Query psy15197
Match_columns 902
No_of_seqs 560 out of 4678
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 23:08:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15197.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15197hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0047|consensus 100.0 2E-138 4E-143 1105.0 25.8 427 476-902 43-475 (505)
2 COG0753 KatE Catalase [Inorgan 100.0 3E-134 7E-139 1098.3 30.0 424 477-902 36-468 (496)
3 cd08156 catalase_clade_3 Clade 100.0 9E-123 2E-127 1037.2 37.2 402 499-902 5-409 (429)
4 cd08154 catalase_clade_1 Clade 100.0 1E-121 3E-126 1031.8 34.7 425 476-902 21-449 (469)
5 PLN02609 catalase 100.0 3E-121 7E-126 1030.5 34.9 422 477-900 37-462 (492)
6 cd08155 catalase_clade_2 Clade 100.0 3E-119 7E-124 1008.5 37.0 402 499-902 8-423 (443)
7 PRK11249 katE hydroperoxidase 100.0 4E-118 9E-123 1050.7 34.5 425 476-902 96-539 (752)
8 cd00328 catalase Catalase heme 100.0 6E-117 1E-121 992.8 36.1 402 499-902 5-413 (433)
9 cd08157 catalase_fungal Fungal 100.0 4E-114 1E-118 980.1 37.3 403 499-902 21-430 (451)
10 PF00199 Catalase: Catalase; 100.0 3.3E-91 7.1E-96 788.5 23.9 339 498-837 44-383 (384)
11 cd08153 srpA_like Catalase-lik 100.0 3.8E-65 8.2E-70 558.8 27.3 281 497-792 13-295 (295)
12 COG5256 TEF1 Translation elong 100.0 3.7E-64 8E-69 547.5 33.8 361 21-531 2-366 (428)
13 cd08150 catalase_like Catalase 100.0 5.5E-61 1.2E-65 523.2 25.8 277 498-792 2-283 (283)
14 cd08151 AOS Allene oxide synth 100.0 8.5E-61 1.8E-65 530.3 24.9 275 497-791 26-327 (328)
15 cd08152 y4iL_like Catalase-lik 100.0 8.7E-57 1.9E-61 494.6 23.7 277 498-793 4-305 (305)
16 PLN00043 elongation factor 1-a 100.0 3.3E-54 7.2E-59 496.2 34.4 347 22-518 3-353 (447)
17 KOG0458|consensus 100.0 5.3E-54 1.1E-58 481.9 29.8 348 18-512 169-518 (603)
18 PTZ00141 elongation factor 1- 100.0 1.4E-53 3.1E-58 491.2 34.0 347 22-518 3-353 (446)
19 PRK12317 elongation factor 1-a 100.0 2.3E-51 4.9E-56 473.4 33.0 340 22-518 2-344 (425)
20 TIGR00483 EF-1_alpha translati 100.0 3.5E-50 7.6E-55 463.5 33.4 345 22-520 3-348 (426)
21 TIGR02034 CysN sulfate adenyly 100.0 6.4E-48 1.4E-52 441.0 32.0 330 27-518 1-333 (406)
22 PRK05124 cysN sulfate adenylyl 100.0 1.3E-47 2.8E-52 445.0 33.8 343 14-518 16-361 (474)
23 KOG0459|consensus 100.0 3.2E-47 7E-52 408.9 20.4 358 23-531 76-439 (501)
24 PRK05506 bifunctional sulfate 100.0 5.6E-45 1.2E-49 438.7 34.1 343 13-518 12-357 (632)
25 PRK12735 elongation factor Tu; 100.0 9.6E-44 2.1E-48 405.6 36.0 273 232-519 56-338 (396)
26 PRK00049 elongation factor Tu; 100.0 1.4E-43 3E-48 404.1 36.4 273 232-519 56-338 (396)
27 PRK12736 elongation factor Tu; 100.0 1.6E-43 3.5E-48 403.5 35.8 270 232-518 56-335 (394)
28 PLN03126 Elongation factor Tu; 100.0 1.9E-43 4.1E-48 408.6 36.0 279 231-518 124-414 (478)
29 COG2895 CysN GTPases - Sulfate 100.0 2.1E-44 4.6E-49 382.5 24.7 273 211-503 52-324 (431)
30 CHL00071 tufA elongation facto 100.0 2.6E-43 5.6E-48 403.7 34.6 277 231-516 55-343 (409)
31 TIGR00485 EF-Tu translation el 100.0 8.3E-43 1.8E-47 398.0 36.2 268 232-516 56-333 (394)
32 PLN03127 Elongation factor Tu; 100.0 6.7E-42 1.5E-46 393.9 36.5 272 231-519 104-389 (447)
33 COG0050 TufB GTPases - transla 100.0 1E-40 2.2E-45 346.2 24.3 266 228-510 52-321 (394)
34 PTZ00327 eukaryotic translatio 100.0 2.4E-39 5.2E-44 372.0 30.1 252 250-526 116-407 (460)
35 KOG0460|consensus 100.0 1.9E-40 4.1E-45 349.9 17.4 269 229-512 95-367 (449)
36 TIGR03680 eif2g_arch translati 100.0 1.4E-36 3.1E-41 347.8 32.0 252 250-526 79-364 (406)
37 PRK04000 translation initiatio 100.0 1E-36 2.2E-41 349.0 29.3 252 250-526 84-369 (411)
38 PRK10512 selenocysteinyl-tRNA- 100.0 2.2E-36 4.8E-41 359.9 31.2 258 232-519 31-291 (614)
39 COG1217 TypA Predicted membran 100.0 1.1E-35 2.4E-40 324.6 29.9 293 219-540 41-348 (603)
40 COG5258 GTPBP1 GTPase [General 100.0 1.3E-35 2.8E-40 317.3 25.8 265 249-540 199-498 (527)
41 TIGR01394 TypA_BipA GTP-bindin 100.0 4.3E-35 9.4E-40 347.2 30.3 245 220-488 38-291 (594)
42 TIGR00475 selB selenocysteine- 100.0 1.1E-34 2.3E-39 344.6 31.0 231 232-485 31-261 (581)
43 KOG0462|consensus 100.0 5.4E-35 1.2E-39 325.2 20.9 236 232-497 103-346 (650)
44 COG3276 SelB Selenocysteine-sp 100.0 2.3E-34 5E-39 316.7 23.3 240 231-500 30-270 (447)
45 COG0481 LepA Membrane GTPase L 100.0 2.9E-34 6.3E-39 314.5 23.1 233 220-487 45-285 (603)
46 PRK10218 GTP-binding protein; 100.0 5.7E-33 1.2E-37 328.7 31.6 243 220-487 42-294 (607)
47 PRK05433 GTP-binding protein L 100.0 1.5E-32 3.3E-37 326.6 29.0 224 233-487 51-283 (600)
48 TIGR01393 lepA GTP-binding pro 100.0 2.6E-32 5.7E-37 324.4 30.1 225 232-487 46-279 (595)
49 cd01883 EF1_alpha Eukaryotic e 100.0 1.2E-32 2.6E-37 290.2 20.1 216 28-393 1-218 (219)
50 KOG0463|consensus 100.0 5.7E-33 1.2E-37 295.2 17.3 266 249-540 217-518 (641)
51 cd04166 CysN_ATPS CysN_ATPS su 100.0 3.1E-31 6.6E-36 277.3 21.0 207 28-393 1-207 (208)
52 PRK07560 elongation factor EF- 100.0 3.8E-30 8.2E-35 314.3 28.7 242 233-486 65-376 (731)
53 COG0480 FusA Translation elong 100.0 2.8E-30 6.2E-35 307.3 26.5 236 218-485 47-392 (697)
54 PRK00007 elongation factor G; 100.0 5.3E-30 1.2E-34 311.3 29.1 232 219-485 48-394 (693)
55 PRK00741 prfC peptide chain re 100.0 2.8E-29 6E-34 294.3 30.4 234 220-485 53-380 (526)
56 PRK12739 elongation factor G; 100.0 1.3E-29 2.9E-34 307.9 28.7 232 219-485 46-391 (691)
57 TIGR00503 prfC peptide chain r 100.0 7.3E-29 1.6E-33 290.8 28.4 234 220-485 54-381 (527)
58 TIGR00484 EF-G translation elo 100.0 7.5E-29 1.6E-33 301.6 29.0 232 219-485 48-392 (689)
59 COG5257 GCD11 Translation init 100.0 6.2E-29 1.4E-33 261.6 24.1 223 251-498 86-332 (415)
60 KOG1143|consensus 100.0 1.3E-29 2.8E-34 269.8 19.0 298 249-581 247-585 (591)
61 cd01884 EF_Tu EF-Tu subfamily. 100.0 4.6E-29 1E-33 258.0 20.6 147 232-392 46-193 (195)
62 KOG0461|consensus 100.0 1.1E-28 2.4E-33 260.7 18.8 227 233-484 43-285 (522)
63 PRK13351 elongation factor G; 100.0 1.8E-27 3.8E-32 290.1 29.3 223 233-485 55-390 (687)
64 PRK05306 infB translation init 100.0 2.8E-27 6E-32 286.0 28.2 219 234-484 320-543 (787)
65 PRK12740 elongation factor G; 100.0 3.4E-27 7.5E-32 287.0 27.1 234 220-485 34-373 (668)
66 TIGR00490 aEF-2 translation el 100.0 6.7E-27 1.4E-31 285.2 26.2 241 233-485 64-374 (720)
67 TIGR00487 IF-2 translation ini 100.0 1.5E-26 3.4E-31 273.8 28.3 217 234-482 117-339 (587)
68 COG4108 PrfC Peptide chain rel 99.9 3.6E-27 7.8E-32 257.4 16.2 233 221-485 56-382 (528)
69 PF00009 GTP_EFTU: Elongation 99.9 2.8E-26 6E-31 236.0 17.5 135 232-392 49-187 (188)
70 CHL00189 infB translation init 99.9 1.8E-25 3.9E-30 268.0 26.3 215 235-483 275-500 (742)
71 PLN00116 translation elongatio 99.9 2.2E-25 4.7E-30 275.6 27.6 241 233-485 64-471 (843)
72 PTZ00416 elongation factor 2; 99.9 7.3E-25 1.6E-29 270.4 28.2 240 233-485 64-467 (836)
73 KOG0465|consensus 99.9 4.8E-26 1E-30 256.3 14.0 234 218-485 76-421 (721)
74 KOG0052|consensus 99.9 2.4E-26 5.2E-31 250.9 9.6 300 22-529 3-309 (391)
75 PRK04004 translation initiatio 99.9 2.2E-23 4.7E-28 247.6 27.3 182 253-458 73-291 (586)
76 TIGR00491 aIF-2 translation in 99.9 3.4E-23 7.4E-28 245.0 26.5 176 252-450 70-282 (590)
77 KOG0466|consensus 99.9 3.9E-25 8.4E-30 230.7 7.4 326 2-490 14-364 (466)
78 COG0532 InfB Translation initi 99.9 2.1E-23 4.6E-28 236.0 21.5 208 233-468 34-248 (509)
79 KOG1145|consensus 99.9 1.2E-23 2.5E-28 234.8 18.5 207 234-468 183-394 (683)
80 COG1159 Era GTPase [General fu 99.9 5.4E-24 1.2E-28 226.0 13.4 187 246-486 49-250 (298)
81 cd01885 EF2 EF2 (for archaea a 99.9 2E-23 4.3E-28 219.9 17.3 126 233-366 45-201 (222)
82 KOG0464|consensus 99.9 2.6E-24 5.6E-29 231.5 3.3 241 213-485 69-419 (753)
83 COG1160 Predicted GTPases [Gen 99.9 1.8E-22 4E-27 225.1 15.4 299 27-368 4-342 (444)
84 cd01886 EF-G Elongation factor 99.9 1.5E-21 3.2E-26 211.9 17.2 123 220-362 38-160 (270)
85 cd04168 TetM_like Tet(M)-like 99.9 2.4E-21 5.2E-26 206.6 17.8 86 232-325 45-130 (237)
86 cd04165 GTPBP1_like GTPBP1-lik 99.8 1.7E-20 3.7E-25 198.2 17.8 124 245-393 78-224 (224)
87 cd04169 RF3 RF3 subfamily. Pe 99.8 1.4E-20 3.1E-25 204.0 17.1 86 232-325 52-137 (267)
88 PRK14845 translation initiatio 99.8 1E-19 2.2E-24 224.5 24.7 174 252-448 527-737 (1049)
89 cd01888 eIF2_gamma eIF2-gamma 99.8 2.7E-20 5.8E-25 194.1 16.7 108 250-367 82-189 (203)
90 KOG0467|consensus 99.8 5.5E-20 1.2E-24 211.9 20.4 126 233-366 54-206 (887)
91 KOG0469|consensus 99.8 5.3E-21 1.1E-25 210.3 11.0 222 250-481 97-470 (842)
92 cd01891 TypA_BipA TypA (tyrosi 99.8 8E-20 1.7E-24 188.8 18.5 125 233-368 47-173 (194)
93 cd01889 SelB_euk SelB subfamil 99.8 5.5E-20 1.2E-24 189.7 17.0 136 233-393 36-188 (192)
94 cd04167 Snu114p Snu114p subfam 99.8 1E-19 2.3E-24 191.0 18.6 126 233-366 48-192 (213)
95 TIGR00436 era GTP-binding prot 99.8 6.8E-20 1.5E-24 199.4 16.1 195 236-486 33-242 (270)
96 cd01890 LepA LepA subfamily. 99.8 2.2E-19 4.8E-24 182.0 18.1 119 233-367 44-167 (179)
97 PRK15494 era GTPase Era; Provi 99.8 8.4E-20 1.8E-24 204.6 15.4 196 235-486 84-294 (339)
98 cd04171 SelB SelB subfamily. 99.8 3.5E-19 7.6E-24 177.0 17.8 124 233-367 32-156 (164)
99 cd04170 EF-G_bact Elongation f 99.8 8E-19 1.7E-23 190.8 15.6 84 233-324 46-129 (268)
100 cd00881 GTP_translation_factor 99.8 5.6E-18 1.2E-22 172.4 18.1 125 233-367 44-177 (189)
101 COG0486 ThdF Predicted GTPase 99.8 1.3E-18 2.8E-23 195.0 13.8 122 233-392 247-376 (454)
102 PRK00089 era GTPase Era; Revie 99.8 7.8E-18 1.7E-22 185.2 15.9 183 248-486 50-247 (292)
103 KOG1144|consensus 99.7 7.2E-18 1.6E-22 192.9 13.1 165 252-439 541-738 (1064)
104 PRK00093 GTP-binding protein D 99.7 6E-17 1.3E-21 188.0 19.4 122 233-368 203-335 (435)
105 TIGR03594 GTPase_EngA ribosome 99.7 5.8E-17 1.3E-21 187.8 18.9 123 233-368 202-335 (429)
106 PF02421 FeoB_N: Ferrous iron 99.7 1.2E-17 2.5E-22 165.8 9.7 115 233-367 29-151 (156)
107 KOG0468|consensus 99.7 2.2E-16 4.8E-21 179.2 19.9 84 232-323 173-261 (971)
108 cd01887 IF2_eIF5B IF2/eIF5B (i 99.7 2E-16 4.4E-21 158.1 17.3 122 236-367 32-156 (168)
109 PRK03003 GTP-binding protein D 99.7 5.8E-16 1.3E-20 181.4 18.8 122 234-369 242-374 (472)
110 cd01895 EngA2 EngA2 subfamily. 99.7 7.9E-16 1.7E-20 153.6 17.1 119 237-367 36-165 (174)
111 cd04160 Arfrp1 Arfrp1 subfamil 99.7 7.1E-16 1.5E-20 154.3 14.5 115 242-367 41-159 (167)
112 PRK05291 trmE tRNA modificatio 99.6 1.5E-15 3.2E-20 176.5 15.6 107 234-367 246-360 (449)
113 cd01894 EngA1 EngA1 subfamily. 99.6 3.6E-15 7.8E-20 146.8 15.1 111 236-367 30-148 (157)
114 TIGR03594 GTPase_EngA ribosome 99.6 2.8E-15 6.1E-20 173.8 16.1 113 234-367 30-150 (429)
115 PRK09518 bifunctional cytidyla 99.6 4.5E-15 9.9E-20 181.8 18.4 120 234-367 481-611 (712)
116 TIGR03156 GTP_HflX GTP-binding 99.6 5.6E-15 1.2E-19 166.2 16.8 112 235-367 220-342 (351)
117 cd04154 Arl2 Arl2 subfamily. 99.6 2.8E-15 6.2E-20 151.6 13.0 109 246-367 53-165 (173)
118 TIGR03598 GTPase_YsxC ribosome 99.6 1.5E-14 3.2E-19 147.6 17.9 102 252-366 65-179 (179)
119 cd01898 Obg Obg subfamily. Th 99.6 7.7E-15 1.7E-19 147.1 14.7 110 243-367 39-161 (170)
120 cd04164 trmE TrmE (MnmE, ThdF, 99.6 1E-14 2.2E-19 143.4 14.4 107 235-367 33-147 (157)
121 PRK03003 GTP-binding protein D 99.6 8.4E-15 1.8E-19 171.6 16.3 113 234-367 69-189 (472)
122 cd01864 Rab19 Rab19 subfamily. 99.6 7.9E-15 1.7E-19 146.9 13.7 109 244-367 43-156 (165)
123 cd04124 RabL2 RabL2 subfamily. 99.6 1.8E-14 3.8E-19 144.2 15.3 99 250-367 48-148 (161)
124 cd01879 FeoB Ferrous iron tran 99.6 5.9E-15 1.3E-19 145.8 11.1 113 235-367 27-147 (158)
125 cd04145 M_R_Ras_like M-Ras/R-R 99.6 1.6E-14 3.5E-19 143.7 14.2 101 251-367 50-154 (164)
126 cd04151 Arl1 Arl1 subfamily. 99.6 1.1E-14 2.4E-19 144.9 12.8 111 246-367 38-150 (158)
127 cd01878 HflX HflX subfamily. 99.6 3.9E-14 8.5E-19 147.3 17.5 104 244-367 81-195 (204)
128 cd04157 Arl6 Arl6 subfamily. 99.6 1.8E-14 3.9E-19 143.1 14.2 109 246-367 40-154 (162)
129 PRK00093 GTP-binding protein D 99.6 2.7E-14 5.9E-19 165.9 17.6 113 234-367 32-152 (435)
130 cd01861 Rab6 Rab6 subfamily. 99.6 2.9E-14 6.3E-19 141.6 15.3 116 237-367 33-152 (161)
131 KOG1191|consensus 99.6 6.5E-15 1.4E-19 164.7 11.7 122 233-367 298-440 (531)
132 TIGR00450 mnmE_trmE_thdF tRNA 99.6 3.8E-14 8.2E-19 164.0 18.0 109 234-367 234-350 (442)
133 PRK09518 bifunctional cytidyla 99.6 4.1E-14 8.8E-19 173.4 18.9 114 233-367 305-426 (712)
134 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.6 2.7E-14 5.9E-19 144.9 14.4 111 246-367 54-166 (174)
135 PRK12298 obgE GTPase CgtA; Rev 99.6 1.2E-14 2.6E-19 165.4 12.9 150 235-410 190-358 (390)
136 cd01897 NOG NOG1 is a nucleola 99.6 4E-14 8.7E-19 141.8 15.2 115 238-367 34-158 (168)
137 cd04149 Arf6 Arf6 subfamily. 99.6 3.1E-14 6.7E-19 143.8 14.2 108 248-367 50-160 (168)
138 cd04138 H_N_K_Ras_like H-Ras/N 99.6 3.3E-14 7.1E-19 140.7 14.2 101 251-367 49-152 (162)
139 cd04150 Arf1_5_like Arf1-Arf5- 99.6 2.5E-14 5.5E-19 143.0 13.2 109 247-367 40-151 (159)
140 cd04158 ARD1 ARD1 subfamily. 99.6 1.9E-14 4.2E-19 145.2 12.2 110 246-367 38-151 (169)
141 PRK09554 feoB ferrous iron tra 99.5 3.6E-14 7.9E-19 173.4 15.3 114 234-367 33-158 (772)
142 cd01865 Rab3 Rab3 subfamily. 99.5 5.7E-14 1.2E-18 140.9 13.9 102 251-367 50-153 (165)
143 TIGR00231 small_GTP small GTP- 99.5 8.9E-14 1.9E-18 135.4 14.9 120 236-367 33-154 (161)
144 cd04136 Rap_like Rap-like subf 99.5 4.5E-14 9.9E-19 140.4 13.1 102 251-367 49-153 (163)
145 cd01867 Rab8_Rab10_Rab13_like 99.5 3.3E-14 7.2E-19 142.9 12.1 102 251-367 52-155 (167)
146 cd04119 RJL RJL (RabJ-Like) su 99.5 6.3E-14 1.4E-18 139.6 14.0 103 250-367 48-157 (168)
147 PLN00223 ADP-ribosylation fact 99.5 1E-13 2.2E-18 142.0 15.7 110 246-367 56-168 (181)
148 cd01860 Rab5_related Rab5-rela 99.5 7.8E-14 1.7E-18 138.8 14.5 104 249-367 48-153 (163)
149 PRK04213 GTP-binding protein; 99.5 1E-13 2.2E-18 143.8 15.7 123 235-367 40-182 (201)
150 PRK15467 ethanolamine utilizat 99.5 2.3E-14 5E-19 143.5 10.4 103 255-392 41-147 (158)
151 PRK11058 GTPase HflX; Provisio 99.5 5.6E-14 1.2E-18 161.7 15.0 114 235-367 228-352 (426)
152 cd04113 Rab4 Rab4 subfamily. 99.5 3.1E-14 6.7E-19 141.7 11.3 101 251-367 49-152 (161)
153 smart00175 RAB Rab subfamily o 99.5 1.2E-13 2.6E-18 137.3 15.4 108 245-367 41-152 (164)
154 cd04106 Rab23_lke Rab23-like s 99.5 8.2E-14 1.8E-18 138.5 14.2 102 250-367 50-153 (162)
155 cd04163 Era Era subfamily. Er 99.5 2.3E-13 4.9E-18 134.4 17.3 106 246-367 46-159 (168)
156 smart00177 ARF ARF-like small 99.5 6.2E-14 1.3E-18 142.6 13.4 109 247-367 53-164 (175)
157 cd00878 Arf_Arl Arf (ADP-ribos 99.5 5.1E-14 1.1E-18 139.7 12.2 110 246-367 38-150 (158)
158 cd01866 Rab2 Rab2 subfamily. 99.5 5.1E-14 1.1E-18 141.7 12.1 103 250-367 52-156 (168)
159 PRK00454 engB GTP-binding prot 99.5 2.7E-13 5.8E-18 139.6 17.4 103 250-367 69-184 (196)
160 cd04127 Rab27A Rab27a subfamil 99.5 7.4E-14 1.6E-18 141.7 13.0 102 251-367 63-167 (180)
161 PRK12299 obgE GTPase CgtA; Rev 99.5 1.5E-13 3.2E-18 153.6 16.5 118 235-367 189-318 (335)
162 smart00173 RAS Ras subfamily o 99.5 8E-14 1.7E-18 139.0 12.9 102 251-367 48-152 (164)
163 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.5 1.4E-13 2.9E-18 137.9 14.6 102 251-367 51-154 (166)
164 cd04155 Arl3 Arl3 subfamily. 99.5 8.4E-14 1.8E-18 140.3 13.1 109 246-367 53-165 (173)
165 PRK09866 hypothetical protein; 99.5 1.2E-13 2.5E-18 160.4 15.7 109 250-367 229-343 (741)
166 PRK12296 obgE GTPase CgtA; Rev 99.5 1.3E-13 2.8E-18 159.8 16.0 123 235-367 190-330 (500)
167 PTZ00133 ADP-ribosylation fact 99.5 9.8E-14 2.1E-18 142.2 13.4 110 246-367 56-168 (182)
168 cd04122 Rab14 Rab14 subfamily. 99.5 1.5E-13 3.3E-18 137.8 14.6 103 250-367 50-154 (166)
169 cd04159 Arl10_like Arl10-like 99.5 1.9E-13 4.1E-18 134.1 14.9 108 247-367 40-151 (159)
170 cd01863 Rab18 Rab18 subfamily. 99.5 7.3E-14 1.6E-18 138.9 11.9 102 250-367 48-152 (161)
171 cd04175 Rap1 Rap1 subgroup. T 99.5 9.3E-14 2E-18 138.8 12.6 102 250-367 48-153 (164)
172 cd04108 Rab36_Rab34 Rab34/Rab3 99.5 7.7E-14 1.7E-18 141.2 12.1 104 251-367 49-155 (170)
173 cd04109 Rab28 Rab28 subfamily. 99.5 1.5E-13 3.1E-18 144.6 14.5 103 250-367 49-156 (215)
174 cd04120 Rab12 Rab12 subfamily. 99.5 1.3E-13 2.8E-18 143.8 13.8 111 244-368 40-154 (202)
175 smart00178 SAR Sar1p-like memb 99.5 1.7E-13 3.7E-18 140.5 14.5 112 246-367 56-175 (184)
176 cd01862 Rab7 Rab7 subfamily. 99.5 2E-13 4.4E-18 136.9 14.8 103 251-367 49-157 (172)
177 cd00154 Rab Rab family. Rab G 99.5 1.6E-13 3.5E-18 134.4 13.6 103 250-367 48-152 (159)
178 cd01868 Rab11_like Rab11-like. 99.5 2.8E-13 6E-18 135.4 15.5 102 251-367 52-155 (165)
179 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.5 1.2E-13 2.5E-18 141.6 12.8 108 249-367 50-160 (183)
180 cd00879 Sar1 Sar1 subfamily. 99.5 1.2E-13 2.5E-18 141.8 12.4 112 246-367 58-181 (190)
181 cd04140 ARHI_like ARHI subfami 99.5 2.3E-13 5.1E-18 136.4 14.3 102 250-367 48-155 (165)
182 cd00877 Ran Ran (Ras-related n 99.5 1.5E-13 3.4E-18 138.3 12.7 101 250-367 48-149 (166)
183 cd04107 Rab32_Rab38 Rab38/Rab3 99.5 2E-13 4.3E-18 141.9 13.8 103 250-367 49-158 (201)
184 cd04162 Arl9_Arfrp2_like Arl9/ 99.5 1.5E-13 3.3E-18 138.2 12.3 109 246-367 39-156 (164)
185 cd04156 ARLTS1 ARLTS1 subfamil 99.5 1.7E-13 3.8E-18 136.0 12.5 106 250-367 43-152 (160)
186 TIGR02528 EutP ethanolamine ut 99.5 9.2E-14 2E-18 135.6 10.1 94 254-367 38-135 (142)
187 cd04110 Rab35 Rab35 subfamily. 99.5 3E-13 6.5E-18 140.5 14.3 102 251-367 55-157 (199)
188 TIGR02729 Obg_CgtA Obg family 99.5 4.8E-13 1E-17 149.4 16.4 118 237-367 190-319 (329)
189 cd04147 Ras_dva Ras-dva subfam 99.5 2.1E-13 4.6E-18 141.4 12.7 102 251-367 47-153 (198)
190 COG2262 HflX GTPases [General 99.5 3.2E-13 6.9E-18 149.4 14.6 120 238-392 226-356 (411)
191 cd04112 Rab26 Rab26 subfamily. 99.5 3.1E-13 6.8E-18 139.3 13.6 102 251-367 50-153 (191)
192 COG2229 Predicted GTPase [Gene 99.5 6.4E-13 1.4E-17 132.2 15.1 116 235-367 51-168 (187)
193 cd04114 Rab30 Rab30 subfamily. 99.5 4.1E-13 8.8E-18 134.6 13.9 110 242-367 45-159 (169)
194 KOG1423|consensus 99.5 1.8E-13 4E-18 144.8 11.7 84 234-325 103-199 (379)
195 cd04144 Ras2 Ras2 subfamily. 99.5 4.4E-13 9.6E-18 138.0 14.4 102 251-367 47-153 (190)
196 PTZ00369 Ras-like protein; Pro 99.5 1.6E-13 3.6E-18 141.1 10.9 102 250-367 52-157 (189)
197 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.5 3.7E-13 8E-18 136.5 13.3 101 251-367 50-154 (172)
198 cd03693 EF1_alpha_II EF1_alpha 99.5 2.6E-13 5.7E-18 123.3 10.9 89 398-486 2-90 (91)
199 cd01874 Cdc42 Cdc42 subfamily. 99.5 4.5E-13 9.9E-18 136.3 14.0 106 251-367 49-165 (175)
200 cd04128 Spg1 Spg1p. Spg1p (se 99.5 6.6E-13 1.4E-17 136.1 15.1 105 251-367 49-156 (182)
201 PLN03118 Rab family protein; P 99.5 3.2E-13 7E-18 141.5 13.1 102 250-367 61-167 (211)
202 cd04116 Rab9 Rab9 subfamily. 99.5 7E-13 1.5E-17 133.3 14.7 101 251-367 54-161 (170)
203 cd04176 Rap2 Rap2 subgroup. T 99.5 3.8E-13 8.2E-18 134.1 12.6 101 251-367 49-153 (163)
204 cd04142 RRP22 RRP22 subfamily. 99.5 7.7E-13 1.7E-17 137.5 15.4 103 251-367 49-164 (198)
205 cd04139 RalA_RalB RalA/RalB su 99.5 4.3E-13 9.3E-18 133.1 12.9 102 250-367 47-152 (164)
206 cd01893 Miro1 Miro1 subfamily. 99.5 9.2E-13 2E-17 132.4 15.4 107 249-367 45-154 (166)
207 COG1084 Predicted GTPase [Gene 99.5 1.5E-12 3.3E-17 140.1 17.6 116 238-367 202-326 (346)
208 cd04161 Arl2l1_Arl13_like Arl2 99.5 2.9E-13 6.3E-18 136.5 11.5 112 245-367 37-159 (167)
209 cd04118 Rab24 Rab24 subfamily. 99.5 4.1E-13 8.9E-18 138.2 12.7 106 251-367 50-156 (193)
210 cd04121 Rab40 Rab40 subfamily. 99.5 1E-12 2.2E-17 135.6 15.6 102 251-367 55-157 (189)
211 cd04123 Rab21 Rab21 subfamily. 99.5 5.7E-13 1.2E-17 131.8 12.7 102 251-367 49-152 (162)
212 PLN03071 GTP-binding nuclear p 99.5 6.5E-13 1.4E-17 140.3 13.8 101 250-367 61-162 (219)
213 cd04126 Rab20 Rab20 subfamily. 99.4 3.3E-13 7.2E-18 142.5 11.4 114 249-368 42-181 (220)
214 cd04111 Rab39 Rab39 subfamily. 99.4 5.7E-13 1.2E-17 139.9 13.1 102 251-367 52-156 (211)
215 cd04101 RabL4 RabL4 (Rab-like4 99.4 1.4E-12 3E-17 130.1 15.0 103 250-367 51-154 (164)
216 cd01881 Obg_like The Obg-like 99.4 7E-13 1.5E-17 133.4 12.9 121 236-367 28-167 (176)
217 PRK12297 obgE GTPase CgtA; Rev 99.4 1.2E-12 2.7E-17 149.9 16.4 117 235-367 189-317 (424)
218 PF10662 PduV-EutP: Ethanolami 99.4 4.1E-13 9E-18 130.7 10.6 94 254-367 39-136 (143)
219 cd04135 Tc10 TC10 subfamily. 99.4 7.8E-13 1.7E-17 133.3 13.1 107 251-367 48-164 (174)
220 cd04132 Rho4_like Rho4-like su 99.4 9.3E-13 2E-17 134.8 13.4 106 251-367 49-157 (187)
221 cd00876 Ras Ras family. The R 99.4 1.1E-12 2.4E-17 129.4 13.5 103 250-367 46-151 (160)
222 cd04115 Rab33B_Rab33A Rab33B/R 99.4 1.7E-12 3.6E-17 131.0 14.8 102 251-367 51-159 (170)
223 cd04143 Rhes_like Rhes_like su 99.4 1.4E-12 3E-17 140.2 14.9 103 251-367 48-161 (247)
224 cd01871 Rac1_like Rac1-like su 99.4 2.2E-12 4.8E-17 131.1 15.2 107 251-367 49-165 (174)
225 cd04177 RSR1 RSR1 subgroup. R 99.4 1.4E-12 3.1E-17 131.2 13.5 102 251-367 49-154 (168)
226 cd00157 Rho Rho (Ras homology) 99.4 1.5E-12 3.3E-17 130.4 13.7 109 250-367 47-163 (171)
227 cd00880 Era_like Era (E. coli 99.4 3.2E-12 6.8E-17 124.5 15.3 116 238-367 31-154 (163)
228 cd01892 Miro2 Miro2 subfamily. 99.4 1.3E-12 2.7E-17 132.2 12.8 103 251-367 54-156 (169)
229 cd04117 Rab15 Rab15 subfamily. 99.4 1.7E-12 3.7E-17 129.9 13.3 102 251-367 49-152 (161)
230 cd04125 RabA_like RabA-like su 99.4 9.4E-13 2E-17 135.1 11.7 103 250-367 48-152 (188)
231 PLN03108 Rab family protein; P 99.4 1.4E-12 3E-17 136.8 12.9 102 251-367 55-158 (210)
232 PLN03110 Rab GTPase; Provision 99.4 1.6E-12 3.5E-17 136.9 13.4 101 251-367 61-164 (216)
233 KOG0092|consensus 99.4 8.3E-13 1.8E-17 132.0 10.4 103 250-367 53-157 (200)
234 KOG0094|consensus 99.4 2.7E-12 5.9E-17 128.2 13.5 111 242-367 62-175 (221)
235 cd03698 eRF3_II_like eRF3_II_l 99.4 1.5E-12 3.2E-17 116.3 10.5 83 400-483 1-83 (83)
236 smart00174 RHO Rho (Ras homolo 99.4 3.8E-12 8.2E-17 128.3 14.5 107 251-367 46-162 (174)
237 cd04130 Wrch_1 Wrch-1 subfamil 99.4 1.8E-12 3.8E-17 131.2 11.7 107 251-367 48-164 (173)
238 cd04137 RheB Rheb (Ras Homolog 99.4 2.5E-12 5.4E-17 130.6 12.5 102 250-367 48-153 (180)
239 PF00025 Arf: ADP-ribosylation 99.4 3.4E-12 7.4E-17 130.0 13.2 116 241-367 48-166 (175)
240 cd04146 RERG_RasL11_like RERG/ 99.4 1.8E-12 3.9E-17 129.8 10.5 102 250-367 46-154 (165)
241 TIGR00437 feoB ferrous iron tr 99.4 1.9E-12 4.1E-17 155.0 12.5 114 234-367 24-145 (591)
242 cd01875 RhoG RhoG subfamily. 99.4 6.8E-12 1.5E-16 129.5 15.0 106 251-367 51-167 (191)
243 cd01882 BMS1 Bms1. Bms1 is an 99.4 1.4E-11 2.9E-16 130.8 17.6 103 249-365 81-184 (225)
244 cd04133 Rop_like Rop subfamily 99.4 5.8E-12 1.3E-16 128.5 13.6 109 250-367 48-163 (176)
245 COG0218 Predicted GTPase [Gene 99.4 1.8E-11 4E-16 124.5 16.6 119 233-367 55-187 (200)
246 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.4 1.6E-11 3.5E-16 126.0 16.2 107 251-367 53-170 (182)
247 cd01876 YihA_EngB The YihA (En 99.3 1.7E-11 3.7E-16 121.4 15.4 103 252-367 46-161 (170)
248 cd04131 Rnd Rnd subfamily. Th 99.3 1.7E-11 3.6E-16 125.4 15.6 107 251-367 49-166 (178)
249 cd01896 DRG The developmentall 99.3 1.1E-11 2.3E-16 132.2 14.7 52 236-287 32-90 (233)
250 cd01870 RhoA_like RhoA-like su 99.3 1.1E-11 2.4E-16 125.1 14.0 106 251-367 49-165 (175)
251 KOG0084|consensus 99.3 7.9E-12 1.7E-16 125.5 12.6 117 238-367 43-162 (205)
252 smart00176 RAN Ran (Ras-relate 99.3 5.4E-12 1.2E-16 131.4 11.9 100 250-367 43-144 (200)
253 cd04134 Rho3 Rho3 subfamily. 99.3 7.3E-12 1.6E-16 128.9 12.5 108 251-367 48-164 (189)
254 cd04089 eRF3_II eRF3_II: domai 99.3 6.8E-12 1.5E-16 111.7 10.5 82 400-483 1-82 (82)
255 KOG0078|consensus 99.3 6.1E-12 1.3E-16 128.0 11.4 112 240-367 48-164 (207)
256 PF01926 MMR_HSR1: 50S ribosom 99.3 1.3E-11 2.9E-16 116.6 12.9 77 235-320 31-116 (116)
257 cd03694 GTPBP_II Domain II of 99.3 6.6E-12 1.4E-16 113.1 10.0 83 401-483 1-87 (87)
258 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.3 2.7E-11 5.8E-16 128.9 15.4 110 250-368 60-179 (232)
259 COG0370 FeoB Fe2+ transport sy 99.3 1E-11 2.2E-16 145.3 13.2 114 234-367 33-154 (653)
260 cd04148 RGK RGK subfamily. Th 99.3 8.5E-12 1.8E-16 132.0 11.3 102 249-367 48-153 (221)
261 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.3 5.7E-11 1.2E-15 125.7 16.5 106 251-367 49-166 (222)
262 cd03696 selB_II selB_II: this 99.3 1.5E-11 3.2E-16 109.8 10.2 82 401-482 1-82 (83)
263 COG1160 Predicted GTPases [Gen 99.3 1.3E-11 2.8E-16 138.8 12.0 123 233-391 33-164 (444)
264 cd03697 EFTU_II EFTU_II: Elong 99.3 9.7E-12 2.1E-16 112.0 8.6 84 401-484 1-86 (87)
265 KOG0073|consensus 99.3 5E-11 1.1E-15 116.0 13.9 117 238-367 47-168 (185)
266 cd01852 AIG1 AIG1 (avrRpt2-ind 99.3 2E-11 4.2E-16 126.6 11.8 129 235-393 33-185 (196)
267 PTZ00132 GTP-binding nuclear p 99.3 4E-11 8.7E-16 125.9 14.4 102 249-367 56-158 (215)
268 cd00882 Ras_like_GTPase Ras-li 99.3 2.8E-11 6E-16 116.2 11.6 102 250-367 44-150 (157)
269 COG1163 DRG Predicted GTPase [ 99.3 3.9E-11 8.4E-16 128.8 13.7 51 238-288 97-154 (365)
270 cd04103 Centaurin_gamma Centau 99.2 3.1E-11 6.8E-16 120.8 10.8 100 251-367 47-149 (158)
271 PF00071 Ras: Ras family; Int 99.2 3.1E-11 6.6E-16 120.1 10.1 103 250-367 47-151 (162)
272 cd04129 Rho2 Rho2 subfamily. 99.2 7.9E-11 1.7E-15 121.0 12.3 107 251-367 49-163 (187)
273 cd03695 CysN_NodQ_II CysN_NodQ 99.2 7.7E-11 1.7E-15 104.7 10.4 81 401-483 1-81 (81)
274 KOG0098|consensus 99.2 4.6E-11 9.9E-16 118.6 9.6 105 249-368 53-159 (216)
275 KOG0080|consensus 99.2 5.7E-11 1.2E-15 114.9 9.3 115 236-367 45-164 (209)
276 KOG1489|consensus 99.2 1E-10 2.2E-15 125.2 12.1 108 246-367 238-357 (366)
277 KOG0394|consensus 99.2 3.4E-11 7.4E-16 119.3 7.8 107 251-367 58-168 (210)
278 cd01873 RhoBTB RhoBTB subfamil 99.2 1.4E-10 3E-15 120.4 12.0 105 250-367 65-186 (195)
279 cd04104 p47_IIGP_like p47 (47- 99.2 2.2E-10 4.7E-15 119.0 13.1 105 251-367 52-174 (197)
280 cd04105 SR_beta Signal recogni 99.2 3.8E-10 8.2E-15 117.9 13.8 71 249-325 46-123 (203)
281 KOG0087|consensus 99.1 2E-10 4.3E-15 116.6 10.4 106 246-368 58-167 (222)
282 cd01850 CDC_Septin CDC/Septin. 99.1 6.9E-09 1.5E-13 113.5 22.2 107 238-359 48-184 (276)
283 cd04102 RabL3 RabL3 (Rab-like3 99.1 1.6E-09 3.4E-14 113.1 16.4 107 250-367 53-180 (202)
284 KOG0075|consensus 99.1 4.7E-10 1E-14 107.2 11.0 116 240-367 54-172 (186)
285 KOG0086|consensus 99.1 3.3E-10 7.1E-15 108.6 9.4 104 249-367 56-161 (214)
286 KOG0093|consensus 99.1 2.4E-10 5.1E-15 109.1 8.3 106 249-367 68-173 (193)
287 KOG0070|consensus 99.1 2.2E-10 4.7E-15 114.5 8.1 118 238-367 48-168 (181)
288 PF06628 Catalase-rel: Catalas 99.0 1.3E-10 2.7E-15 99.6 2.8 46 856-902 1-47 (68)
289 cd01899 Ygr210 Ygr210 subfamil 99.0 6E-09 1.3E-13 115.8 16.2 37 250-286 68-111 (318)
290 COG3596 Predicted GTPase [Gene 99.0 8E-09 1.7E-13 109.4 16.1 106 249-367 85-212 (296)
291 PRK09435 membrane ATPase/prote 99.0 7.4E-09 1.6E-13 115.3 16.5 102 249-367 147-250 (332)
292 KOG0095|consensus 99.0 3.9E-09 8.5E-14 100.9 11.8 113 242-367 47-159 (213)
293 PLN00023 GTP-binding protein; 99.0 4.4E-09 9.6E-14 115.7 13.8 70 250-325 82-165 (334)
294 cd01853 Toc34_like Toc34-like 99.0 5E-08 1.1E-12 105.0 21.6 81 238-324 66-162 (249)
295 KOG0047|consensus 99.0 2.4E-10 5.2E-15 124.6 3.1 107 89-208 20-126 (505)
296 KOG0076|consensus 99.0 2.9E-09 6.2E-14 104.9 10.1 121 238-367 56-177 (197)
297 PF08477 Miro: Miro-like prote 99.0 1.8E-09 3.9E-14 102.0 8.2 66 251-322 50-119 (119)
298 PF09439 SRPRB: Signal recogni 98.9 4.2E-09 9.2E-14 107.2 10.7 71 250-325 48-126 (181)
299 COG1100 GTPase SAR1 and relate 98.9 1.4E-08 3E-13 106.5 14.8 72 250-326 53-126 (219)
300 TIGR02836 spore_IV_A stage IV 98.9 8.5E-09 1.9E-13 115.1 13.2 71 251-323 91-192 (492)
301 COG4917 EutP Ethanolamine util 98.9 6.6E-09 1.4E-13 97.2 8.0 92 255-367 41-136 (148)
302 PRK13768 GTPase; Provisional 98.9 8.1E-09 1.7E-13 111.6 9.9 116 251-392 97-247 (253)
303 KOG0079|consensus 98.9 5.8E-09 1.3E-13 99.8 7.6 106 249-370 55-162 (198)
304 PTZ00099 rab6; Provisional 98.8 1E-08 2.2E-13 104.7 8.9 103 250-367 28-132 (176)
305 KOG0091|consensus 98.8 2.7E-08 5.8E-13 96.9 11.0 103 251-368 58-164 (213)
306 KOG0071|consensus 98.8 3.4E-08 7.4E-13 93.9 11.1 119 238-367 48-168 (180)
307 KOG0097|consensus 98.8 4.3E-08 9.3E-13 92.9 11.4 100 249-367 58-163 (215)
308 smart00053 DYNc Dynamin, GTPas 98.8 1.2E-07 2.5E-12 101.3 16.2 84 235-326 108-207 (240)
309 PTZ00258 GTP-binding protein; 98.8 7.3E-08 1.6E-12 109.3 15.4 35 251-285 85-126 (390)
310 PF00350 Dynamin_N: Dynamin fa 98.8 2E-08 4.4E-13 100.8 9.7 65 250-321 100-168 (168)
311 KOG0395|consensus 98.8 1.9E-08 4.1E-13 104.5 9.7 106 250-367 50-155 (196)
312 COG0536 Obg Predicted GTPase [ 98.8 4.7E-08 1E-12 106.3 12.6 104 249-367 205-323 (369)
313 PRK09602 translation-associate 98.8 1.3E-07 2.8E-12 108.3 16.9 35 251-285 72-113 (396)
314 KOG0088|consensus 98.8 3.2E-09 7E-14 102.5 3.0 103 250-367 61-165 (218)
315 KOG0090|consensus 98.8 6.6E-08 1.4E-12 98.7 12.6 78 243-325 74-159 (238)
316 TIGR00991 3a0901s02IAP34 GTP-b 98.8 1.7E-07 3.7E-12 102.8 16.0 74 246-325 81-167 (313)
317 PRK09601 GTP-binding protein Y 98.7 1.2E-07 2.6E-12 106.4 15.0 35 251-285 66-107 (364)
318 KOG0410|consensus 98.7 2.7E-08 5.9E-13 106.8 8.7 94 249-367 224-331 (410)
319 COG0753 KatE Catalase [Inorgan 98.7 5.3E-09 1.1E-13 116.8 3.3 100 91-203 14-113 (496)
320 cd03690 Tet_II Tet_II: This su 98.7 7.7E-08 1.7E-12 86.3 10.2 81 398-483 1-85 (85)
321 TIGR00750 lao LAO/AO transport 98.7 5.7E-08 1.2E-12 107.6 11.3 99 249-367 125-228 (300)
322 TIGR00073 hypB hydrogenase acc 98.7 5.1E-08 1.1E-12 102.1 8.8 95 250-367 102-197 (207)
323 PF04548 AIG1: AIG1 family; I 98.7 1.6E-07 3.5E-12 98.8 12.3 98 240-347 38-155 (212)
324 KOG0072|consensus 98.7 7E-08 1.5E-12 92.3 8.4 112 245-367 56-169 (182)
325 cd04092 mtEFG2_II_like mtEFG2_ 98.7 1.3E-07 2.8E-12 84.4 9.4 78 401-482 1-82 (83)
326 cd03688 eIF2_gamma_II eIF2_gam 98.6 2.3E-07 5.1E-12 85.8 10.8 88 397-484 2-112 (113)
327 PF03029 ATP_bind_1: Conserved 98.6 3.8E-08 8.2E-13 105.3 5.7 110 252-367 92-227 (238)
328 cd04088 EFG_mtEFG_II EFG_mtEFG 98.6 2.4E-07 5.1E-12 82.6 9.8 78 401-482 1-82 (83)
329 PF04670 Gtr1_RagA: Gtr1/RagA 98.6 6E-07 1.3E-11 95.4 14.0 120 237-361 33-161 (232)
330 cd03692 mtIF2_IVc mtIF2_IVc: t 98.6 4.7E-07 1E-11 81.0 10.6 78 403-482 3-83 (84)
331 PF05049 IIGP: Interferon-indu 98.6 7.9E-07 1.7E-11 100.0 14.8 96 252-361 87-200 (376)
332 cd03699 lepA_II lepA_II: This 98.6 3.9E-07 8.5E-12 81.9 10.0 83 401-483 1-86 (86)
333 cd03689 RF3_II RF3_II: this su 98.5 4.6E-07 1E-11 81.3 9.7 76 404-483 2-84 (85)
334 KOG0074|consensus 98.5 4E-07 8.7E-12 86.8 9.0 112 244-367 54-169 (185)
335 cd01342 Translation_Factor_II_ 98.5 8.1E-07 1.8E-11 77.0 10.4 80 401-482 1-82 (83)
336 cd03691 BipA_TypA_II BipA_TypA 98.5 8.9E-07 1.9E-11 79.4 10.6 78 401-482 1-85 (86)
337 KOG0448|consensus 98.5 2.6E-06 5.6E-11 99.7 16.9 99 252-360 207-309 (749)
338 KOG1490|consensus 98.5 5.7E-07 1.2E-11 101.6 10.6 117 245-370 209-334 (620)
339 cd04091 mtEFG1_II_like mtEFG1_ 98.5 8.7E-07 1.9E-11 78.7 9.8 76 401-482 1-80 (81)
340 TIGR00993 3a0901s04IAP86 chlor 98.5 3.8E-06 8.3E-11 99.1 17.1 75 245-325 160-250 (763)
341 KOG0077|consensus 98.4 1.4E-06 3.1E-11 85.5 10.6 75 244-325 57-135 (193)
342 TIGR00101 ureG urease accessor 98.4 1.8E-06 3.8E-11 90.1 11.8 94 250-367 91-186 (199)
343 PRK10463 hydrogenase nickel in 98.4 1.9E-07 4E-12 101.8 4.6 96 249-367 183-279 (290)
344 KOG1532|consensus 98.4 3E-06 6.4E-11 89.5 13.1 115 250-367 115-254 (366)
345 KOG1486|consensus 98.4 2.1E-06 4.5E-11 89.5 11.1 50 238-287 96-152 (364)
346 cd01900 YchF YchF subfamily. 98.4 1E-06 2.2E-11 96.0 8.9 36 251-286 62-104 (274)
347 KOG0083|consensus 98.4 3.3E-07 7.1E-12 86.4 4.2 102 250-367 46-150 (192)
348 COG5192 BMS1 GTP-binding prote 98.3 6.4E-06 1.4E-10 93.5 13.9 100 249-361 111-210 (1077)
349 KOG2486|consensus 98.3 2.2E-06 4.8E-11 90.9 9.6 109 250-368 182-307 (320)
350 PF03144 GTP_EFTU_D2: Elongati 98.3 2.2E-06 4.7E-11 74.5 7.9 68 415-482 1-74 (74)
351 KOG4252|consensus 98.3 4.5E-07 9.7E-12 89.6 3.8 104 250-369 68-173 (246)
352 PF00735 Septin: Septin; Inte 98.2 5.5E-05 1.2E-09 83.0 19.2 64 274-347 113-176 (281)
353 PRK11249 katE hydroperoxidase 98.2 4.8E-07 1E-11 109.3 3.3 99 92-203 76-174 (752)
354 KOG0081|consensus 98.2 5.3E-06 1.2E-10 80.7 9.7 102 251-367 67-171 (219)
355 COG0012 Predicted GTPase, prob 98.2 1.6E-05 3.4E-10 88.5 13.9 36 251-286 67-109 (372)
356 cd03700 eEF2_snRNP_like_II EF2 98.2 1E-05 2.2E-10 73.9 10.1 76 402-481 2-91 (93)
357 KOG1547|consensus 98.2 8.5E-05 1.8E-09 77.3 17.7 38 12-49 31-69 (336)
358 cd01858 NGP_1 NGP-1. Autoanti 98.2 5.5E-06 1.2E-10 82.8 9.0 38 10-48 87-124 (157)
359 COG0378 HypB Ni2+-binding GTPa 98.2 5E-06 1.1E-10 84.6 8.6 93 251-367 97-191 (202)
360 PF03308 ArgK: ArgK protein; 98.1 2.6E-05 5.6E-10 83.1 12.8 96 250-367 121-220 (266)
361 KOG1707|consensus 98.1 9.2E-06 2E-10 93.8 10.0 108 251-370 56-168 (625)
362 KOG0096|consensus 98.1 6E-06 1.3E-10 82.9 6.5 102 251-369 59-161 (216)
363 cd01859 MJ1464 MJ1464. This f 98.1 1.3E-05 2.8E-10 79.9 8.9 92 267-392 5-96 (156)
364 cd04178 Nucleostemin_like Nucl 98.0 1.3E-05 2.7E-10 81.8 8.4 26 24-49 115-140 (172)
365 PLN02609 catalase 98.0 2.3E-06 4.9E-11 98.8 3.2 97 91-200 15-111 (492)
366 PF14578 GTP_EFTU_D4: Elongati 98.0 5.8E-05 1.2E-09 66.5 10.8 77 399-481 3-79 (81)
367 cd04090 eEF2_II_snRNP Loc2 eEF 98.0 5.2E-05 1.1E-09 69.3 10.8 68 401-468 1-82 (94)
368 KOG0393|consensus 98.0 1.8E-05 3.9E-10 81.4 8.5 108 251-368 53-170 (198)
369 cd01857 HSR1_MMR1 HSR1/MMR1. 97.9 4.2E-05 9.1E-10 75.1 9.6 80 266-364 3-84 (141)
370 COG5019 CDC3 Septin family pro 97.9 0.00019 4.2E-09 79.5 15.5 102 236-347 65-196 (373)
371 cd01856 YlqF YlqF. Proteins o 97.9 2.2E-05 4.7E-10 79.7 7.6 88 259-367 3-91 (171)
372 cd08154 catalase_clade_1 Clade 97.9 5.8E-06 1.3E-10 95.3 3.6 97 94-203 3-99 (469)
373 cd01858 NGP_1 NGP-1. Autoanti 97.9 2.8E-05 6E-10 77.7 8.0 83 268-367 2-85 (157)
374 cd00066 G-alpha G protein alph 97.9 1.6E-05 3.4E-10 89.0 6.6 89 235-324 145-241 (317)
375 TIGR03596 GTPase_YlqF ribosome 97.9 2.7E-05 6E-10 85.3 7.8 97 259-391 5-102 (276)
376 cd01855 YqeH YqeH. YqeH is an 97.9 2.3E-05 5E-10 80.8 6.7 24 26-49 127-150 (190)
377 smart00275 G_alpha G protein a 97.9 3.6E-05 7.8E-10 86.9 8.7 52 235-286 168-219 (342)
378 KOG3883|consensus 97.8 6.2E-05 1.4E-09 73.1 7.9 102 250-367 59-165 (198)
379 KOG1673|consensus 97.8 8.9E-05 1.9E-09 72.2 8.2 107 250-367 68-176 (205)
380 COG1703 ArgK Putative periplas 97.8 0.00013 2.8E-09 78.8 10.2 100 249-367 142-244 (323)
381 cd01849 YlqF_related_GTPase Yl 97.7 6.5E-05 1.4E-09 74.9 7.4 26 24-49 98-123 (155)
382 KOG1954|consensus 97.7 0.00027 5.9E-09 77.6 12.1 67 252-325 148-225 (532)
383 PRK12288 GTPase RsgA; Reviewed 97.7 6.8E-05 1.5E-09 84.7 7.4 21 29-49 208-228 (347)
384 KOG3886|consensus 97.7 0.00012 2.6E-09 75.9 8.2 90 235-327 36-132 (295)
385 PF03193 DUF258: Protein of un 97.7 3.6E-05 7.8E-10 77.1 3.9 23 27-49 36-58 (161)
386 PRK09563 rbgA GTPase YlqF; Rev 97.7 0.00011 2.4E-09 81.0 8.1 89 258-367 7-96 (287)
387 cd03112 CobW_like The function 97.7 0.00013 2.7E-09 73.3 7.8 65 250-323 86-158 (158)
388 PRK09563 rbgA GTPase YlqF; Rev 97.6 0.00017 3.6E-09 79.6 9.2 26 24-49 119-144 (287)
389 PRK14974 cell division protein 97.6 0.0005 1.1E-08 77.2 12.8 92 250-367 222-320 (336)
390 cd01851 GBP Guanylate-binding 97.6 0.00085 1.8E-08 71.3 13.6 38 249-286 58-103 (224)
391 TIGR03596 GTPase_YlqF ribosome 97.6 0.00018 3.9E-09 78.9 8.6 24 25-48 117-140 (276)
392 cd01855 YqeH YqeH. YqeH is an 97.6 9.4E-05 2E-09 76.2 5.9 100 264-391 24-124 (190)
393 TIGR00157 ribosome small subun 97.5 9.8E-05 2.1E-09 79.5 5.6 22 28-49 122-143 (245)
394 PRK12289 GTPase RsgA; Reviewed 97.5 8.6E-05 1.9E-09 83.9 5.3 21 29-49 175-195 (352)
395 cd01849 YlqF_related_GTPase Yl 97.5 0.00032 7E-09 69.9 8.9 74 276-367 1-75 (155)
396 cd01856 YlqF YlqF. Proteins o 97.5 0.00026 5.6E-09 71.8 8.3 25 24-48 113-137 (171)
397 PRK10416 signal recognition pa 97.5 0.0004 8.6E-09 77.6 10.3 93 249-367 195-300 (318)
398 KOG2655|consensus 97.5 0.0048 1E-07 69.2 18.4 86 251-346 79-191 (366)
399 PRK12289 GTPase RsgA; Reviewed 97.5 0.00029 6.3E-09 79.7 8.7 80 271-367 86-165 (352)
400 PRK13796 GTPase YqeH; Provisio 97.5 0.00015 3.4E-09 82.6 6.6 24 26-49 160-183 (365)
401 COG3640 CooC CO dehydrogenase 97.5 0.00013 2.8E-09 76.3 5.2 65 249-323 132-197 (255)
402 TIGR01425 SRP54_euk signal rec 97.5 0.0006 1.3E-08 78.7 11.1 64 250-324 182-252 (429)
403 cd01857 HSR1_MMR1 HSR1/MMR1. 97.5 0.00017 3.6E-09 70.8 5.7 21 28-48 85-105 (141)
404 cd03114 ArgK-like The function 97.5 0.00036 7.9E-09 69.3 8.0 58 250-322 91-148 (148)
405 TIGR00157 ribosome small subun 97.4 0.00021 4.6E-09 76.9 6.4 84 268-367 30-113 (245)
406 COG1161 Predicted GTPases [Gen 97.4 0.00025 5.4E-09 79.5 7.1 26 24-49 130-155 (322)
407 COG1162 Predicted GTPases [Gen 97.4 0.00017 3.7E-09 78.7 5.4 21 28-48 166-186 (301)
408 TIGR03597 GTPase_YqeH ribosome 97.4 0.00034 7.3E-09 79.7 7.8 23 27-49 155-177 (360)
409 KOG0082|consensus 97.4 0.00061 1.3E-08 76.2 9.5 89 235-324 179-275 (354)
410 TIGR00064 ftsY signal recognit 97.4 0.0015 3.3E-08 71.4 12.3 93 249-367 153-258 (272)
411 PF00448 SRP54: SRP54-type pro 97.3 0.00049 1.1E-08 71.6 7.0 66 250-325 83-154 (196)
412 KOG1487|consensus 97.3 0.00044 9.4E-09 72.9 6.3 51 238-288 93-150 (358)
413 PRK00098 GTPase RsgA; Reviewed 97.3 0.00057 1.2E-08 75.8 7.6 81 271-367 77-157 (298)
414 TIGR00092 GTP-binding protein 97.1 0.0014 3E-08 74.2 8.9 36 251-286 67-109 (368)
415 PRK14722 flhF flagellar biosyn 97.1 0.0017 3.7E-08 73.8 9.3 39 249-287 214-258 (374)
416 cd01854 YjeQ_engC YjeQ/EngC. 97.1 0.00079 1.7E-08 74.3 6.4 23 27-49 162-184 (287)
417 PRK12727 flagellar biosynthesi 97.1 0.0021 4.6E-08 75.5 10.2 24 26-49 350-373 (559)
418 PF00503 G-alpha: G-protein al 97.1 0.00017 3.6E-09 83.1 1.0 88 235-323 219-315 (389)
419 TIGR03597 GTPase_YqeH ribosome 97.0 0.0011 2.3E-08 75.6 7.0 93 262-367 51-143 (360)
420 KOG0447|consensus 97.0 0.0051 1.1E-07 70.6 12.1 96 234-336 392-507 (980)
421 cd03115 SRP The signal recogni 97.0 0.0064 1.4E-07 61.6 11.8 65 250-325 82-153 (173)
422 cd01854 YjeQ_engC YjeQ/EngC. 97.0 0.0013 2.9E-08 72.5 6.9 79 272-367 76-154 (287)
423 cd01859 MJ1464 MJ1464. This f 97.0 0.0027 6E-08 63.1 8.5 24 25-48 100-123 (156)
424 KOG2485|consensus 97.0 0.0014 3.1E-08 71.2 6.7 29 21-49 138-166 (335)
425 PRK11889 flhF flagellar biosyn 96.9 0.0037 8E-08 71.0 9.5 66 250-325 320-391 (436)
426 PRK00771 signal recognition pa 96.8 0.015 3.3E-07 67.7 13.9 63 251-324 176-245 (437)
427 KOG1491|consensus 96.8 0.0037 8.1E-08 68.6 8.2 37 251-287 84-127 (391)
428 PRK00098 GTPase RsgA; Reviewed 96.8 0.0015 3.2E-08 72.5 5.4 22 28-49 166-187 (298)
429 COG1162 Predicted GTPases [Gen 96.8 0.0048 1E-07 67.6 8.8 78 275-367 80-157 (301)
430 KOG0780|consensus 96.7 0.0081 1.8E-07 67.0 10.0 66 246-323 179-252 (483)
431 PRK01889 GTPase RsgA; Reviewed 96.7 0.0046 9.9E-08 70.4 8.5 78 272-367 110-187 (356)
432 KOG0099|consensus 96.7 0.003 6.5E-08 66.8 6.0 89 234-324 185-282 (379)
433 TIGR02475 CobW cobalamin biosy 96.6 0.0097 2.1E-07 67.3 10.6 21 29-49 7-27 (341)
434 PRK05703 flhF flagellar biosyn 96.6 0.0053 1.2E-07 71.4 8.6 65 250-324 299-370 (424)
435 PRK14721 flhF flagellar biosyn 96.6 0.0053 1.1E-07 70.9 8.3 67 249-325 268-340 (420)
436 PRK12288 GTPase RsgA; Reviewed 96.6 0.0069 1.5E-07 68.6 8.9 81 272-367 118-198 (347)
437 PRK06995 flhF flagellar biosyn 96.6 0.0021 4.5E-08 75.4 4.7 23 27-49 257-279 (484)
438 TIGR00487 IF-2 translation ini 96.5 0.013 2.9E-07 70.7 11.5 182 255-483 391-576 (587)
439 PRK05306 infB translation init 96.5 0.016 3.6E-07 71.9 12.4 181 256-483 594-778 (787)
440 COG0523 Putative GTPases (G3E 96.5 0.016 3.6E-07 64.8 11.4 90 251-359 85-184 (323)
441 PF02492 cobW: CobW/HypB/UreG, 96.5 0.0047 1E-07 63.2 6.3 66 251-325 85-155 (178)
442 PRK13796 GTPase YqeH; Provisio 96.5 0.0072 1.6E-07 69.0 8.3 89 266-367 60-149 (365)
443 KOG0465|consensus 96.4 0.0005 1.1E-08 80.0 -1.5 126 25-178 38-169 (721)
444 KOG4423|consensus 96.4 0.00086 1.9E-08 67.5 0.3 104 252-367 76-184 (229)
445 KOG2743|consensus 96.4 0.0022 4.8E-08 69.1 3.2 26 24-49 54-80 (391)
446 KOG1534|consensus 96.4 0.0076 1.6E-07 62.1 6.8 40 28-67 5-44 (273)
447 PRK12724 flagellar biosynthesi 96.4 0.015 3.3E-07 66.8 9.9 65 250-324 299-372 (432)
448 COG1419 FlhF Flagellar GTP-bin 96.3 0.023 5E-07 64.6 11.0 67 249-325 280-352 (407)
449 PRK11537 putative GTP-binding 96.3 0.031 6.7E-07 62.6 11.8 21 29-49 7-27 (318)
450 COG0541 Ffh Signal recognition 96.3 0.03 6.6E-07 63.9 11.6 64 249-324 181-252 (451)
451 PRK14723 flhF flagellar biosyn 96.2 0.01 2.2E-07 72.9 8.1 23 27-49 186-208 (767)
452 CHL00189 infB translation init 96.2 0.027 6E-07 69.4 11.5 183 253-483 546-732 (742)
453 PRK10867 signal recognition pa 96.2 0.032 7E-07 64.9 11.5 64 250-324 183-253 (433)
454 PF06858 NOG1: Nucleolar GTP-b 96.2 0.013 2.8E-07 48.3 5.7 53 267-322 5-58 (58)
455 KOG1533|consensus 96.2 0.01 2.3E-07 62.2 6.5 70 250-324 96-176 (290)
456 KOG3905|consensus 96.1 0.06 1.3E-06 58.9 12.2 52 310-367 222-280 (473)
457 PF05783 DLIC: Dynein light in 96.1 0.029 6.2E-07 65.9 10.7 52 310-367 196-254 (472)
458 PRK12723 flagellar biosynthesi 96.1 0.022 4.8E-07 65.4 9.4 66 249-324 253-325 (388)
459 cd03702 IF2_mtIF2_II This fami 96.1 0.027 5.8E-07 51.7 8.1 65 402-468 2-67 (95)
460 PRK06731 flhF flagellar biosyn 96.0 0.0094 2E-07 65.1 5.9 66 250-325 154-225 (270)
461 PRK12726 flagellar biosynthesi 96.0 0.012 2.6E-07 66.7 6.5 24 26-49 206-229 (407)
462 TIGR00959 ffh signal recogniti 96.0 0.025 5.3E-07 65.8 9.1 64 250-324 182-252 (428)
463 COG0532 InfB Translation initi 95.8 0.057 1.2E-06 63.0 11.1 95 386-482 399-496 (509)
464 cd03110 Fer4_NifH_child This p 95.4 0.086 1.9E-06 53.6 9.7 66 249-324 91-156 (179)
465 KOG2484|consensus 95.3 0.057 1.2E-06 60.8 8.5 79 255-346 126-206 (435)
466 KOG1424|consensus 95.2 0.0085 1.8E-07 69.1 1.7 41 21-61 309-349 (562)
467 COG1341 Predicted GTPase or GT 95.0 0.094 2E-06 59.5 9.0 25 25-49 72-96 (398)
468 cd03701 IF2_IF5B_II IF2_IF5B_I 94.9 0.14 3E-06 47.0 8.4 65 402-468 2-67 (95)
469 KOG3887|consensus 94.9 0.077 1.7E-06 55.9 7.4 103 252-360 76-186 (347)
470 PF00199 Catalase: Catalase; 94.9 0.0072 1.6E-07 69.4 -0.1 94 94-200 1-94 (384)
471 cd08157 catalase_fungal Fungal 94.8 0.013 2.9E-07 68.2 2.0 73 118-203 1-73 (451)
472 KOG2484|consensus 94.8 0.026 5.7E-07 63.4 4.1 27 23-49 249-275 (435)
473 PF09547 Spore_IV_A: Stage IV 94.5 0.29 6.3E-06 56.0 11.2 27 23-49 14-40 (492)
474 cd03703 aeIF5B_II aeIF5B_II: T 94.3 0.25 5.4E-06 46.5 8.7 66 402-467 2-80 (110)
475 PF13555 AAA_29: P-loop contai 94.3 0.039 8.5E-07 46.4 3.1 22 28-49 25-46 (62)
476 cd04178 Nucleostemin_like Nucl 94.3 0.092 2E-06 53.6 6.5 42 276-325 1-44 (172)
477 cd01130 VirB11-like_ATPase Typ 94.2 0.061 1.3E-06 55.4 5.0 24 26-49 25-48 (186)
478 KOG3859|consensus 94.2 0.26 5.7E-06 53.0 9.5 23 26-48 42-64 (406)
479 PF13207 AAA_17: AAA domain; P 94.2 0.042 9.1E-07 51.8 3.4 22 28-49 1-22 (121)
480 KOG4181|consensus 94.1 0.55 1.2E-05 52.0 12.0 23 27-49 189-211 (491)
481 COG0552 FtsY Signal recognitio 94.0 0.19 4.2E-06 55.8 8.5 24 26-49 139-162 (340)
482 cd02042 ParA ParA and ParB of 93.8 0.36 7.9E-06 44.3 8.8 35 251-287 40-74 (104)
483 PRK13900 type IV secretion sys 93.7 0.058 1.3E-06 60.8 4.0 35 13-49 149-183 (332)
484 cd01983 Fer4_NifH The Fer4_Nif 93.3 0.71 1.5E-05 40.8 9.7 36 252-287 35-71 (99)
485 cd03238 ABC_UvrA The excision 93.3 0.064 1.4E-06 54.9 3.1 24 26-49 21-44 (176)
486 PF13671 AAA_33: AAA domain; P 93.3 0.069 1.5E-06 51.8 3.2 22 29-50 2-23 (143)
487 COG1136 SalX ABC-type antimicr 93.2 0.055 1.2E-06 57.4 2.6 19 29-47 34-52 (226)
488 COG1161 Predicted GTPases [Gen 93.2 0.2 4.3E-06 56.3 7.2 94 254-367 13-107 (322)
489 KOG0446|consensus 93.2 0.042 9.2E-07 67.0 1.9 67 251-325 132-213 (657)
490 KOG1424|consensus 93.1 0.29 6.3E-06 56.9 8.3 80 264-361 164-244 (562)
491 TIGR00235 udk uridine kinase. 93.1 0.083 1.8E-06 55.3 3.8 27 23-49 3-29 (207)
492 cd02019 NK Nucleoside/nucleoti 93.1 0.071 1.5E-06 45.7 2.6 21 29-49 2-22 (69)
493 PF13191 AAA_16: AAA ATPase do 93.1 0.088 1.9E-06 53.2 3.8 41 8-49 7-47 (185)
494 COG1126 GlnQ ABC-type polar am 93.0 0.062 1.3E-06 56.2 2.6 21 28-48 30-50 (240)
495 COG0563 Adk Adenylate kinase a 93.0 0.077 1.7E-06 54.4 3.2 24 27-50 1-24 (178)
496 PRK13851 type IV secretion sys 93.0 0.095 2.1E-06 59.3 4.1 34 14-49 152-185 (344)
497 PF00005 ABC_tran: ABC transpo 93.0 0.072 1.6E-06 51.4 2.8 23 27-49 12-34 (137)
498 PRK13833 conjugal transfer pro 92.9 0.1 2.3E-06 58.5 4.4 25 25-49 143-167 (323)
499 PRK08118 topology modulation p 92.9 0.082 1.8E-06 53.6 3.2 22 28-49 3-24 (167)
500 PRK05480 uridine/cytidine kina 92.9 0.098 2.1E-06 54.7 3.9 27 23-49 3-29 (209)
No 1
>KOG0047|consensus
Probab=100.00 E-value=2e-138 Score=1104.98 Aligned_cols=427 Identities=61% Similarity=1.072 Sum_probs=411.9
Q ss_pred eeeccccCCCCCCCCcccce-eee--eeecccCCcccccc-eecchhhhhhhheecccCceeeEEEEEeeccCCCCCCCC
Q psy15197 476 SVGFLLSELSHPCPVSSKFE-ARI--VVFNITTPITIGYP-VTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADT 551 (902)
Q Consensus 476 ~kG~vL~~~~~~~~~~~~F~-a~i--rvvHakg~ga~G~f-v~~~is~~~~A~if~~~gk~tpv~vRFS~~~g~~~~~D~ 551 (902)
.+|.+|....+....-..|+ +|| |++||||+||+||| |+|+|+.+|+|.+|+++|++||+++|||||+|++|||||
T Consensus 43 ~rGPiLlQD~~lld~~ahFDRERIPERVvHAkGagA~GyFEvThDIt~~~~a~~f~kvgk~Tp~~vRFSTV~gE~GSaDT 122 (505)
T KOG0047|consen 43 PRGPILLQDYHLLDEMAHFDRERIPERVVHAKGAGAFGYFEVTHDITKYCKADIFSKVGKQTPVLVRFSTVGGESGSADT 122 (505)
T ss_pred CCCCeeeehhHHHHHHhhcchhcCchhhhccccCcceeEEEeechHHHHHHHHHHhhccccCceEEEEEeecccCCCccc
Confidence 56777777777666666786 677 99999999999999 999999999999999999999999999999999999999
Q ss_pred CCCcccceeEEEccCCceeeeccccceeccCChHHHHHHHhhccCCCCCCCCCchhHHHHHhcCchhHHHHHHHhcCCCC
Q psy15197 552 NRDPRGFALKFYTEDGNWDLVGNNTPIFFVRDPFRFIHFIHSQKRNPVTHLRDWDAFWDFISLLPETTHQVMILFSDRGI 631 (902)
Q Consensus 552 ~~d~RG~AiKf~~~eG~~D~v~~n~PvFf~rd~~~F~~~i~a~~~~p~~~~~~~~~~~~f~~~~pe~~~~~~~~~s~~~~ 631 (902)
+|||||||+||||+|||||||+||+||||+|||++||.|||++||+|+|+++|++++||||+++|||+||++++|||||+
T Consensus 123 ~RDPRGFAvKFYTeeGn~DlVgNNtPVFFiRDpikFP~fIHtqKrNPQthlkD~~m~wDf~t~~pEslHqv~~lFsDrGt 202 (505)
T KOG0047|consen 123 ARDPRGFAVKFYTEEGNWDLVGNNTPVFFIRDPIKFPSFIHTQKRNPQTHLKDPDMFWDFLTLRPESLHQVMFLFSDRGT 202 (505)
T ss_pred ccCCCcceEEEEeccccceeecCCcceEEeecccccchhhhccCCCchhcccCcchhHHHhhcCHhhhhheeeeeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCcccccccceEEEEeCCCCeEEEEEEEEeCCCCCCCCHHHHHHhhCCCCChhHHHHHHHHhcCCCceEEEEEEEeC
Q psy15197 632 PDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLYDNIAKGNFPSWTFYIQVMT 711 (902)
Q Consensus 632 p~s~~~~~~~s~~tf~~~n~~G~~~~vk~~~~p~~g~~~l~~~ea~~~~~~~~d~l~~dL~~~i~~g~~p~w~l~vQ~~~ 711 (902)
|++||+|++||+|||+|+|++|+.+||||||+|+||+++|+.++|.+|++.+|||.++|||++|++|+||+|+|+||+|+
T Consensus 203 P~~yrhM~Gyg~hTyk~vNk~G~~~YvkfH~ktdqGiKnLt~e~A~~l~gs~pdya~~DLf~aI~~gnyPsW~~yIQvMt 282 (505)
T KOG0047|consen 203 PDGYRHMNGYGSHTYKMVNKEGKAHYVKFHFKTDQGIKNLTVEEAARLAGSDPDYAIRDLFNAIENGNYPSWTMYIQVMT 282 (505)
T ss_pred CcccccccccccceEEEEccCCceEEEEEEEecCCCcccCCHHHHHHhcCCCccHHHHHHHHHHHcCCCCceEEEEEeeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhccCCCCCCCCccccCCCCCCcEeeEEEEecCCCCCchhhhcccccCCCCCCCcccCCCCchhhhhhhhhHHHhhhh
Q psy15197 712 FEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNYYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHR 791 (902)
Q Consensus 712 ~~d~~~~~~~i~D~Tk~Wpe~~~p~~~vG~l~l~~~~~~~~~~~eq~aF~P~~~v~Gi~~s~Dp~lq~R~~aY~~s~~~R 791 (902)
++++++|+|+++|.||+||++++||++||+||||+||.|||+|+||+||+|+|+||||++|+|+|||+|+|||+||||||
T Consensus 283 ~~qa~K~~fnpfDvTKvWP~~~~PL~~VGk~vLn~Np~NyFaevEQ~AF~Pa~~VPGIe~S~Dk~LQ~RlFSY~DthRHR 362 (505)
T KOG0047|consen 283 PEQAEKFRFNPFDVTKVWPHKDYPLIPVGKMVLNRNPDNYFAEVEQAAFSPAHIVPGIEPSPDKMLQGRLFSYPDTHRHR 362 (505)
T ss_pred HhHhhcCCCCccceeccccCcCccccccceEEecCCchHHHHHHHHhccCccccCCCcccCCchhheeeeeccCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCccCCCcCCCCCccc-cCCCCCCccccCCCCCCCCCCC-CCCCCcceeeeEEeeccCCCCCccchH
Q psy15197 792 LGANFNQIPVNCPYRVRVANYQRDAPMAI-DNQNGAPNYYPNSFKGPEPTPR-GAWSTYNATGDVKRYKTEDEDNFSQPR 869 (902)
Q Consensus 792 ~g~N~~qlpvN~p~~~~~~~~~rdG~m~~-~~~~~~~nY~pns~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~ddf~Q~~ 869 (902)
||+||+|||||||+...++|+||||+|++ +|+|+.|||+||++.++...++ +.++...++|.+.|+.+.+++||+|||
T Consensus 363 LGpNy~QlPVNcPy~~~~~n~qrDG~Mn~~~nqg~~pNYfpn~~~~~~~~~~~~~~~~~~~~G~~yr~~~~~d~nf~Qpr 442 (505)
T KOG0047|consen 363 LGPNYLQLPVNCPYRVRAHNFQRDGPMNVNDNQGGAPNYFPNSFSGPRQQPDPVLEHTEVASGDVYRYEIGDDNNFEQPR 442 (505)
T ss_pred cCCCeeecccCCCccccccccccCCceeeccCCCCCCCcCcccCCccccCCccccCCceeeecceEEeeccCcccccchH
Confidence 99999999999999435999999999999 8999999999999998887774 667778899999999988899999999
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHhcCCChhhhcC
Q psy15197 870 ILWSNVLDDAARDRMTTNIASVLKLAAPFIQIL 902 (902)
Q Consensus 870 ~~~~~~~~~~ek~~li~n~~~~l~~~~~~I~~~ 902 (902)
+||++++++.||+|||.|++++|+++.++||+|
T Consensus 443 ~fy~~vl~~~q~kr~v~n~~~hl~~~~~~iq~r 475 (505)
T KOG0047|consen 443 AFYEKVLDKEQQKRLVQNIAGHLSEARDFIQKR 475 (505)
T ss_pred HHHHHHhcHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 999999999999999999999999999999986
No 2
>COG0753 KatE Catalase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.1e-134 Score=1098.33 Aligned_cols=424 Identities=52% Similarity=0.866 Sum_probs=398.5
Q ss_pred eeccccCCCCCCCCcccce-eee--eeecccCCcccccc-eecchhhhhhhheecccCceeeEEEEEeeccCCCCCCCCC
Q psy15197 477 VGFLLSELSHPCPVSSKFE-ARI--VVFNITTPITIGYP-VTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTN 552 (902)
Q Consensus 477 kG~vL~~~~~~~~~~~~F~-a~i--rvvHakg~ga~G~f-v~~~is~~~~A~if~~~gk~tpv~vRFS~~~g~~~~~D~~ 552 (902)
+|.+|....++......|. ++| |++||||.||+||| ++++++.+|+|++|+++|++||++||||||+|++||+|++
T Consensus 36 rGP~llqD~~l~Ekl~hFdrErIPERvvHAkG~GA~G~F~~t~dis~yT~A~~f~e~Gk~TP~fvRFSTV~g~~gsaDt~ 115 (496)
T COG0753 36 RGPTLLQDFHLLEKLAHFDRERIPERVVHAKGSGAHGYFEVTEDISKYTKAKLFQEVGKKTPVFVRFSTVAGERGSADTV 115 (496)
T ss_pred CCCeehhhHHHHHHHHhhccccCcchheecccccceeEEEeccchHhhhcchhhcccCcccceEEEEEeccCCCCCcccc
Confidence 3445544444444444565 455 89999999999999 9999999999999999999999999999999999999999
Q ss_pred CCcccceeEEEccCCceeeeccccceeccCChHHHHHHHhhccCCCCCCCCCchhHHHHHhcCchhHHHHHHHhcCCCCC
Q psy15197 553 RDPRGFALKFYTEDGNWDLVGNNTPIFFVRDPFRFIHFIHSQKRNPVTHLRDWDAFWDFISLLPETTHQVMILFSDRGIP 632 (902)
Q Consensus 553 ~d~RG~AiKf~~~eG~~D~v~~n~PvFf~rd~~~F~~~i~a~~~~p~~~~~~~~~~~~f~~~~pe~~~~~~~~~s~~~~p 632 (902)
|||||||+||||+||||||||||+||||||||.|||||+|++||+|.|++++++++|||++.+|||+||+||+|||||||
T Consensus 116 RD~RGFA~KfYTeeGNwDlVGNNtPVFFirDa~KFPdfiH~~Kp~P~t~l~~~~~~wDF~s~~PES~H~vt~l~SDrGiP 195 (496)
T COG0753 116 RDVRGFALKFYTEEGNWDLVGNNTPVFFIRDAIKFPDFIHAQKPDPRTNLRDADTFWDFWSLNPESLHQVTWLMSDRGIP 195 (496)
T ss_pred cccccceEEEeeccccceeeccCcceEEeeChhhchhhhhhcCCCCCcccccchhhhhhhhcCcHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCcccccccceEEEEeCCCCeEEEEEEEEeCCCCCCCCHHHHHHhhCCCCChhHHHHHHHHhcCCCceEEEEEEEeCc
Q psy15197 633 DGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLYDNIAKGNFPSWTFYIQVMTF 712 (902)
Q Consensus 633 ~s~~~~~~~s~~tf~~~n~~G~~~~vk~~~~p~~g~~~l~~~ea~~~~~~~~d~l~~dL~~~i~~g~~p~w~l~vQ~~~~ 712 (902)
+|||+|+|||+|||+|+|++|+.+||||||+|.||+++|+++||++|+|+|+||+++|||++|++|++|+|+|+||+|++
T Consensus 196 ~syR~M~GfgvHtf~~vN~~Ge~~~VKfH~k~~qGik~Lt~~EA~ki~g~d~d~~~~dL~eaIe~Gd~P~W~l~VQvm~~ 275 (496)
T COG0753 196 ASYRHMEGFGVHTFKFVNAKGKRVWVKFHFKPKQGIKNLTWDEAAKLAGKDPDYHQRDLYEAIENGDFPEWDLYVQVMPE 275 (496)
T ss_pred hhhhcCCCccceeEEEEcCCCCEEEEEEEEEeccccccCCHHHHHHHhccCccHHHHHHHHHHHcCCCCceEEEEEecCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhccCCCCCCCCccccCCCCCCcEeeEEEEecCCCCCchhhhcccccCCCCCCCcccCCCCchhhhhhhhhHHHhhhhc
Q psy15197 713 EEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNYYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRL 792 (902)
Q Consensus 713 ~d~~~~~~~i~D~Tk~Wpe~~~p~~~vG~l~l~~~~~~~~~~~eq~aF~P~~~v~Gi~~s~Dp~lq~R~~aY~~s~~~R~ 792 (902)
+|+.+++|+++|+||+||++++|+++||+|+|||||+|||+||||+||+|+|+||||++|+|||||+|+|||+||||||+
T Consensus 276 ~da~k~~f~~~D~TKvWp~~~~P~~~VG~m~LnrNpdN~FaE~EQaAF~p~nlVPGi~fS~D~lLQgRlFsY~DtqryRl 355 (496)
T COG0753 276 EDAEKFDFDPLDLTKLWPEEDYPLIEVGTMVLNRNPDNFFAEVEQAAFAPGNLVPGIDFSPDPLLQGRLFSYGDTQRYRL 355 (496)
T ss_pred hHhhcCCCCCCccccccccccCCceEeeEEEEccCccchhhhhhhhccccccCCCCCCCCCChhhhhccccchhhhHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCccCCCcCCCCCccccCCCCCCccccCCCCCC---CCCCCCCCCCcceeeeEEeec-cCCCCCccch
Q psy15197 793 GANFNQIPVNCPYRVRVANYQRDAPMAIDNQNGAPNYYPNSFKGP---EPTPRGAWSTYNATGDVKRYK-TEDEDNFSQP 868 (902)
Q Consensus 793 g~N~~qlpvN~p~~~~~~~~~rdG~m~~~~~~~~~nY~pns~~~~---~~~~~~~~~~~~~~g~~~~~~-~~~~ddf~Q~ 868 (902)
|+||+|||||||+|+ |+||||||+|++.++.|.+||+|||++.. ..++.+..++.++.|.+.++. ..++|||+||
T Consensus 356 G~N~~qlPvN~P~~p-~~~~qrDG~m~~~~~~g~~~y~Pn~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~f~Q~ 434 (496)
T COG0753 356 GPNYHQIPVNRPKCP-VHNNQRDGQMRMGINTGPANYEPNSFGDNPEAPEQPGFVEPPERVEGDKQRRRAISDDDYFSQP 434 (496)
T ss_pred CCCcccccCCCCCCc-ccccccCCccccccCCCCcccCccccccCccccccccccCCceeeccchhhhccccccccchhH
Confidence 999999999999996 99999999999965556699999999752 234557788888999998654 4589999999
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHhcCCCh-hhhcC
Q psy15197 869 RILWSNVLDDAARDRMTTNIASVLKLAAP-FIQIL 902 (902)
Q Consensus 869 ~~~~~~~~~~~ek~~li~n~~~~l~~~~~-~I~~~ 902 (902)
|+||+ +|++.||++|+.||+++|++|.+ +||+|
T Consensus 435 ~~~~~-~~~~~ek~~l~~n~~~~l~~v~~~~i~~r 468 (496)
T COG0753 435 RALYR-SLSDAEKQHLVDNIAFELSKVTDPEIKER 468 (496)
T ss_pred HHHHH-hCCHHHHHHHHHHHHHHhhcCCcHHHHHH
Confidence 99999 99999999999999999999985 79876
No 3
>cd08156 catalase_clade_3 Clade 3 of the heme-binding enzyme catalase. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes, which is involved in the protection of cells from the toxic effects of peroxides. It catalyzes the conversion of hydrogen peroxide to water and molecular oxygen. Catalases also utilize hydrogen peroxide to oxidize various substrates such as alcohol or phenols. Clade 3 catalases are the most abundant subfamily and are found in all three kingdoms of life; they have a relatively small subunit size of 43 to 75 kDa, and bind a protoheme IX (heme b) group buried deep inside the structure. Clade 3 catalases also bind NADPH as a second redox-active cofactor. They form tetramers, and in eukaryotic cells, catalases are located in peroxisomes.
Probab=100.00 E-value=8.7e-123 Score=1037.23 Aligned_cols=402 Identities=59% Similarity=1.025 Sum_probs=393.4
Q ss_pred eeecccCCcccccc-eecchhhhhhhheecccCceeeEEEEEeeccCCCCCCCCCCCcccceeEEEccCCceeeeccccc
Q psy15197 499 VVFNITTPITIGYP-VTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWDLVGNNTP 577 (902)
Q Consensus 499 rvvHakg~ga~G~f-v~~~is~~~~A~if~~~gk~tpv~vRFS~~~g~~~~~D~~~d~RG~AiKf~~~eG~~D~v~~n~P 577 (902)
|++||||.|++|+| ++++++.+|+|.+|+.+|++|||++||||++|++|++|+.||+|||||||||+||||||||||+|
T Consensus 5 R~vHAKG~ga~G~F~~t~d~s~~t~A~~f~~~gk~tPv~vRFStv~G~~gs~Dt~rd~RGfAvKF~t~eG~~DlV~nn~P 84 (429)
T cd08156 5 RVVHAKGAGAFGTFEVTHDITKYTKAKIFSEVGKKTPVFVRFSTVAGERGSADTERDPRGFALKFYTEEGNWDLVGNNTP 84 (429)
T ss_pred ccccCccceEEEEEEECCCchHHHhhhhccCCCceeeEEEecccCCCCCCCCccCCCcCeEEEEEEcCCCceeeeeecCc
Confidence 69999999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCChHHHHHHHhhccCCCCCCCCCchhHHHHHhcCchhHHHHHHHhcCCCCCCCcCcccccccceEEEEeCCCCeEE
Q psy15197 578 IFFVRDPFRFIHFIHSQKRNPVTHLRDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVY 657 (902)
Q Consensus 578 vFf~rd~~~F~~~i~a~~~~p~~~~~~~~~~~~f~~~~pe~~~~~~~~~s~~~~p~s~~~~~~~s~~tf~~~n~~G~~~~ 657 (902)
|||+|||++|++|+||+||+|.|+++|++++|||++.|||++||++|++++||+|+||++|+|||+|||+|+|++|+.+|
T Consensus 85 vFfirdp~~Fp~~i~a~k~~P~t~~~d~~~~~df~~~~Pes~h~~~~l~s~rg~P~sy~~~~~~gvhtf~~vn~~G~~~~ 164 (429)
T cd08156 85 VFFIRDPIKFPDFIHTQKRNPQTNLKDPDMFWDFWSLSPESLHQVTILFSDRGIPDGYRHMNGYGSHTFSLVNAKGERFW 164 (429)
T ss_pred ccccCCHHHhhHhhhccCCCCCCCCCCHHHHHHHHhcChHHHHHHHHHhcCCCCCCCcccCCccccceEEEEcCCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCCHHHHHHhhCCCCChhHHHHHHHHhcCCCceEEEEEEEeCcchhccCCCCCCCCccccCCCCCCcE
Q psy15197 658 CKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLYDNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLL 737 (902)
Q Consensus 658 vk~~~~p~~g~~~l~~~ea~~~~~~~~d~l~~dL~~~i~~g~~p~w~l~vQ~~~~~d~~~~~~~i~D~Tk~Wpe~~~p~~ 737 (902)
|||||+|.+|+++|+++||.++++.++|||++||+++|++|++|+|+|+||||+++|+.+|+|||+|+||+||++++|++
T Consensus 165 Vk~h~~p~~G~~~l~~eea~~~~g~~~d~l~~dL~~~I~~G~~P~w~l~vQv~~~~d~~~~~f~~~D~Tk~Wp~~~~p~i 244 (429)
T cd08156 165 VKFHFKTDQGIKNLTNEEAAELAGEDPDYAQRDLFEAIERGDFPSWTLYVQVMPEEDAEKYRFNPFDLTKVWPHKDYPLI 244 (429)
T ss_pred EEEEEEeCCCCCCCCHHHHHHhhCCCCCHHHHHHHHHHhcCCCceEEEEEEEechhHhhcCCCCCCcCCccCCccCcceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEecCCCCCchhhhcccccCCCCCCCcccCCCCchhhhhhhhhHHHhhhhcCCCCCCCCCCCCCCccCCCcCCCCC
Q psy15197 738 PVGHMVLDKNPGNYYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGANFNQIPVNCPYRVRVANYQRDAP 817 (902)
Q Consensus 738 ~vG~l~l~~~~~~~~~~~eq~aF~P~~~v~Gi~~s~Dp~lq~R~~aY~~s~~~R~g~N~~qlpvN~p~~~~~~~~~rdG~ 817 (902)
+||+|+||+|++|+|+||||++|+|+++||||++|+|||||+|+|||+|||+||+|+||+|||||||+|+ ++||||||+
T Consensus 245 ~vG~l~Ln~n~~n~f~e~eq~aF~P~~lvpGI~~S~Dp~Lq~R~faY~dt~~~Rlg~N~~qlPvN~p~~~-~~n~~rdG~ 323 (429)
T cd08156 245 EVGKLELNRNPENYFAEVEQAAFSPSNLVPGIGFSPDKMLQGRLFSYADAHRYRLGVNYHQLPVNRPKCP-VNNYQRDGA 323 (429)
T ss_pred EeEEEEEecCCcchhhhhheecccCcCCCCCccCCCCccccccccccHhhhhcCCCCCHhhCCCCCCCCC-CCCcCcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999995 999999999
Q ss_pred ccc-cCCCCCCccccCCCCCCCCCCCCCCCCcceeeeEEeeccC-CCCCccchHHHHhhcCCHHHHHHHHHHHHHHhcCC
Q psy15197 818 MAI-DNQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKRYKTE-DEDNFSQPRILWSNVLDDAARDRMTTNIASVLKLA 895 (902)
Q Consensus 818 m~~-~~~~~~~nY~pns~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~ddf~Q~~~~~~~~~~~~ek~~li~n~~~~l~~~ 895 (902)
|++ .|+++.|||+|||++++...+.+.+++..++|.+.|+.+. ++|||+|||+||+ +|+++||+|||+|++++|++|
T Consensus 324 m~~~~~~~~~~nY~pns~~~~~~~~~~~~~~~~~~g~~~r~~~~~~~d~f~Q~~~~~~-~~~~~~q~~li~n~a~~l~~v 402 (429)
T cd08156 324 MRVDGNGGGAPNYEPNSFGGPPEDPEYAEPPLPVSGDADRYNYRDDDDDYTQAGDLYR-LVSEDERERLVENIAGHLKGA 402 (429)
T ss_pred ccccCCCCCCCcccCCCCCCCccCCCcCCCCceEeeeEEEccccCccchhhhhHHHHh-cCCHHHHHHHHHHHHHHHhCC
Confidence 999 6888899999999999888888888889999999999876 7899999999998 899999999999999999999
Q ss_pred ChhhhcC
Q psy15197 896 APFIQIL 902 (902)
Q Consensus 896 ~~~I~~~ 902 (902)
+++||+|
T Consensus 403 ~~~i~~r 409 (429)
T cd08156 403 PEFIQER 409 (429)
T ss_pred CHHHHHH
Confidence 9999876
No 4
>cd08154 catalase_clade_1 Clade 1 of the heme-binding enzyme catalase. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes, which is involved in the protection of cells from the toxic effects of peroxides. It catalyzes the conversion of hydrogen peroxide to water and molecular oxygen. Catalases also utilize hydrogen peroxide to oxidize various substrates such as alcohol or phenols. Clade 1 catalases are found in bacteria, algae, and plants; they have a relatively small subunit size of 55 to 69 kDa, and bind a protoheme IX (heme b) group buried deep inside the structure. They appear to form tetramers. In eukaryotic cells, catalases are located in peroxisomes.
Probab=100.00 E-value=1.5e-121 Score=1031.82 Aligned_cols=425 Identities=42% Similarity=0.752 Sum_probs=405.7
Q ss_pred eeeccccCCCCCCCCcccce-eee--eeecccCCcccccc-eecchhhhhhhheecccCceeeEEEEEeeccCCCCCCCC
Q psy15197 476 SVGFLLSELSHPCPVSSKFE-ARI--VVFNITTPITIGYP-VTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADT 551 (902)
Q Consensus 476 ~kG~vL~~~~~~~~~~~~F~-a~i--rvvHakg~ga~G~f-v~~~is~~~~A~if~~~gk~tpv~vRFS~~~g~~~~~D~ 551 (902)
.+|.+|....++......|. .+| |++||||.|++|+| ++++++.+++|++|+.+|+++||++|||+++|+++++|+
T Consensus 21 ~~Gp~llqD~~l~ekl~hf~reripeR~vHAKG~ga~G~F~vt~d~~~~t~a~~f~~~g~~~Pv~vRFS~~~g~~~~~D~ 100 (469)
T cd08154 21 PRGPVLLEDYHLIEKLAHFDRERIPERVVHARGAGAHGYFEAYGDISDYTRASFLQEPGKKTPVFVRFSTVIHGKGSPET 100 (469)
T ss_pred CCCCchhhhHHHHHHhhhhccCCCccccccCceeeEEEEEEECCchhHHHhhhhccCCCccceeEEecccCCCCCCCCcc
Confidence 35556665544444444454 444 89999999999999 999999999999999999999999999999999999999
Q ss_pred CCCcccceeEEEccCCceeeeccccceeccCChHHHHHHHhhccCCCCCCCCCchhHHHHHhcCchhHHHHHHHhcCCCC
Q psy15197 552 NRDPRGFALKFYTEDGNWDLVGNNTPIFFVRDPFRFIHFIHSQKRNPVTHLRDWDAFWDFISLLPETTHQVMILFSDRGI 631 (902)
Q Consensus 552 ~~d~RG~AiKf~~~eG~~D~v~~n~PvFf~rd~~~F~~~i~a~~~~p~~~~~~~~~~~~f~~~~pe~~~~~~~~~s~~~~ 631 (902)
.+|+||||||||+++|||||||||+||||+|||++||+||||+||+|.|+++|++++|||++.|||++||++|++|+||+
T Consensus 101 ~rd~RGfAvKf~~~eg~~Dlv~nn~PvFfird~~~Fp~~i~a~k~~P~t~~~dp~~~~dF~~~~PEs~h~~~~l~s~rg~ 180 (469)
T cd08154 101 LRDPRGFAVKFYTEEGNWDLVGNNLPVFFIRDAIKFPDMIHALKPSPVTNIQDPNRIFDFFSHVPESTHMLTFLYSDWGT 180 (469)
T ss_pred CCCCCeeEEEEEcCCCceeeeeecCCccccCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHcChHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCcccccccceEEEEeCCCCeEEEEEEEEeCCCCCCCCHHHHHHhhCCCCChhHHHHHHHHhcCCCceEEEEEEEeC
Q psy15197 632 PDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLYDNIAKGNFPSWTFYIQVMT 711 (902)
Q Consensus 632 p~s~~~~~~~s~~tf~~~n~~G~~~~vk~~~~p~~g~~~l~~~ea~~~~~~~~d~l~~dL~~~i~~g~~p~w~l~vQ~~~ 711 (902)
|+||++|+|||+|||+|+|++|+.+||||||+|.+|+++|+++||.+++|.++|||++||+++|++|++|+|+|+||||+
T Consensus 181 P~sy~~~~g~gvhtf~~vn~~G~~~~VK~h~~p~~G~~~l~~eeA~~~~g~~~d~l~~dL~~~I~~G~~p~w~l~vQv~~ 260 (469)
T cd08154 181 PASYRHMDGSGVHTYKWVNAEGKVVYVKYHWKPKQGVKNLTAEEAAEVQGKNFNHATQDLYDAIAAGNYPEWELYVQIMD 260 (469)
T ss_pred CCCcccCCccccceeEEEcCCCCEEEEEEEEEeCCCCCCCCHHHHHHhhcCCCcHHHHHHHHHHhcCCCceEEEEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhccCCCCCCCCccccCCCCCCcEeeEEEEecCCCCCchhhhcccccCCCCCCCcccCCCCchhhhhhhhhHHHhhhh
Q psy15197 712 FEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNYYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHR 791 (902)
Q Consensus 712 ~~d~~~~~~~i~D~Tk~Wpe~~~p~~~vG~l~l~~~~~~~~~~~eq~aF~P~~~v~Gi~~s~Dp~lq~R~~aY~~s~~~R 791 (902)
++|+.+|+|||+|+||+||++++|+++||+|+||+||+|+|++|||++|+|+++||||++|+|||||+|+|||+|||++|
T Consensus 261 ~~D~~~~~f~~~D~Tk~WP~~~~p~i~vG~l~Ln~np~n~f~e~eq~aF~P~~lvpGI~~S~DpmLq~R~faY~ds~r~R 340 (469)
T cd08154 261 PKDLDKLDFDPLDDTKIWPEDQFPLKPVGKMTLNKNPDNFFAEVEQVAFSPGNLVPGIEPSDDKMLQGRLFSYSDTQRYR 340 (469)
T ss_pred HHHhhcCCCCCCcCCcccCCcccceEEeEEEEEecCCcchhhhhhhhhccccCCCCCcCCCCCcccccccccchhHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCccCCCcCCCCCccccCCCCCCccccCCCCCCCCCCCCCCCCcceeeeEEeeccCCCCCccchHHH
Q psy15197 792 LGANFNQIPVNCPYRVRVANYQRDAPMAIDNQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKRYKTEDEDNFSQPRIL 871 (902)
Q Consensus 792 ~g~N~~qlpvN~p~~~~~~~~~rdG~m~~~~~~~~~nY~pns~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ddf~Q~~~~ 871 (902)
+|+||+|||||||+|+ ++||||||+|+++++++.|||+|||++++...+.+.+++.+++|.+.++.+.++|||+|||+|
T Consensus 341 lg~N~~qlPvN~p~~~-~~~~~rdG~m~~~~~~~~~nY~pns~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Q~~~~ 419 (469)
T cd08154 341 LGPNYLQLPINAPKAA-VHNNQRDGQMNYGHDTSDVNYEPSRLDGLPEAPKYPYSQPPLSGTTQQAPIAKTNNFKQAGER 419 (469)
T ss_pred CCCChhhCCCCCCCCC-CCCCCcCCCccccCCCCCCcccCCCCCCCccCCCcCCCCeeEeeeEEeccCCCCCcccCcHHH
Confidence 9999999999999996 999999999999888999999999999988888888888999999999987788999999999
Q ss_pred HhhcCCHHHHHHHHHHHHHHhcCCChhhhcC
Q psy15197 872 WSNVLDDAARDRMTTNIASVLKLAAPFIQIL 902 (902)
Q Consensus 872 ~~~~~~~~ek~~li~n~~~~l~~~~~~I~~~ 902 (902)
|+ +|++.||+|||+|++++|++|+++||+|
T Consensus 420 ~~-~~~~~~~~~l~~n~~~~l~~~~~~i~~r 449 (469)
T cd08154 420 YR-SFSEEEQENLIKNLVVDLSDVNEEIKLR 449 (469)
T ss_pred HH-hCCHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 98 9999999999999999999999999876
No 5
>PLN02609 catalase
Probab=100.00 E-value=3.1e-121 Score=1030.46 Aligned_cols=422 Identities=40% Similarity=0.701 Sum_probs=402.0
Q ss_pred eeccccCCCCCCCCcccce-eee--eeecccCCcccccc-eecchhhhhhhheecccCceeeEEEEEeeccCCCCCCCCC
Q psy15197 477 VGFLLSELSHPCPVSSKFE-ARI--VVFNITTPITIGYP-VTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTN 552 (902)
Q Consensus 477 kG~vL~~~~~~~~~~~~F~-a~i--rvvHakg~ga~G~f-v~~~is~~~~A~if~~~gk~tpv~vRFS~~~g~~~~~D~~ 552 (902)
+|.+|....++......|. ++| |++||||.|++|+| ++++++.+|+|++|+.+|+++||++|||+++|+++++|+.
T Consensus 37 ~Gp~llqD~~l~eklahFdrErIpeR~vHAKG~ga~G~F~~t~d~s~~t~a~~f~~~g~~~pv~vRFS~~~G~~~s~D~~ 116 (492)
T PLN02609 37 RGPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTHDISNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETL 116 (492)
T ss_pred CCcchhhhHHHHHhhcccccccccccccccccceEEEEEEECCchhHHHhhhhccCCCceeeEEEEcccCCCCCCCCCcC
Confidence 4556665555555555675 666 99999999999999 9999999999999999999999999999999999999999
Q ss_pred CCcccceeEEEccCCceeeeccccceeccCChHHHHHHHhhccCCCCCCCCCchhHHHHHhcCchhHHHHHHHhcCCCCC
Q psy15197 553 RDPRGFALKFYTEDGNWDLVGNNTPIFFVRDPFRFIHFIHSQKRNPVTHLRDWDAFWDFISLLPETTHQVMILFSDRGIP 632 (902)
Q Consensus 553 ~d~RG~AiKf~~~eG~~D~v~~n~PvFf~rd~~~F~~~i~a~~~~p~~~~~~~~~~~~f~~~~pe~~~~~~~~~s~~~~p 632 (902)
+|+||||||||+++|+|||||||+||||+|||++||+||||+||+|+|+++|++++|||++.|||++||++|+|++||+|
T Consensus 117 rd~RG~AiKf~~~~g~~D~v~nn~PvFf~rdp~~Fpd~i~a~k~~P~t~~~dp~~~~dF~~~~PEs~h~~~~l~s~rg~P 196 (492)
T PLN02609 117 RDPRGFAVKFYTREGNFDMVGNNFPVFFIRDGMKFPDMVHALKPNPKTHIQEPWRILDFLSHHPESLHMFTFLFDDRGIP 196 (492)
T ss_pred CCCCeeEEEEEcCCCceeEeeecCceeecCCHHHhhHHHhhcCCCCCCCCCChhHHHHHHhcChHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCcccccccceEEEEeCCCCeEEEEEEEEeCCCCCCCCHHHHHHhhCCCCChhHHHHHHHHhcCCCceEEEEEEEeCc
Q psy15197 633 DGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLYDNIAKGNFPSWTFYIQVMTF 712 (902)
Q Consensus 633 ~s~~~~~~~s~~tf~~~n~~G~~~~vk~~~~p~~g~~~l~~~ea~~~~~~~~d~l~~dL~~~i~~g~~p~w~l~vQ~~~~ 712 (902)
.||++|+|||+|||+|+|++|+++||||||+|.+|+++|+++||.+++|.++|||++||+++|++|++|+|+|+||||++
T Consensus 197 ~syr~~~~~gvhtF~~vn~~G~~~~Vk~h~~p~~G~~~l~~eeA~~~~g~~~d~l~~DL~~~I~~G~~P~w~l~vQv~~~ 276 (492)
T PLN02609 197 QDYRHMEGFGVHTYKLINKAGKAHYVKFHWKPTCGVKNLLDEEAVRVGGSNHSHATQDLYDSIAAGNYPEWKLFIQTMDP 276 (492)
T ss_pred CCcccCCcccccceEEECCCCCEEEEEEEEEeCCCCCCCCHHHHHHhhCCCCcHHHHHHHHHHhcCCCceeEEEEEEcCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhccCCCCCCCCccccCCCCCCcEeeEEEEecCCCCCchhhhcccccCCCCCCCcccCCCCchhhhhhhhhHHHhhhhc
Q psy15197 713 EEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNYYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRL 792 (902)
Q Consensus 713 ~d~~~~~~~i~D~Tk~Wpe~~~p~~~vG~l~l~~~~~~~~~~~eq~aF~P~~~v~Gi~~s~Dp~lq~R~~aY~~s~~~R~ 792 (902)
+|+.+|+|||+|+||+||++++|+++||+|+||+|++|+|++|||++|+|+++||||++|+|||||+|+|||+|||+||+
T Consensus 277 ~d~~~~~f~~~D~Tk~WP~~~~p~i~vG~l~Ln~np~n~f~e~eq~aF~P~~lvpGI~~S~DpmLq~R~faY~ds~~~Rl 356 (492)
T PLN02609 277 EDEDKFDFDPLDVTKTWPEDILPLQPVGRLVLNRNIDNFFAENEQLAFCPAIVVPGIYYSDDKLLQTRIFAYADTQRHRL 356 (492)
T ss_pred HHHhcCCCCCCcCCceeCcccceeeEeEEEEEecCCcchhhhhhhhccccccCCCCccCCCCcccccccccchhHhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCccCCCcCCCCCccccCCCCCCccccCCCCCCCCCCCCCCCCcceeeeEEeeccCCCCCccchHHHH
Q psy15197 793 GANFNQIPVNCPYRVRVANYQRDAPMAIDNQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKRYKTEDEDNFSQPRILW 872 (902)
Q Consensus 793 g~N~~qlpvN~p~~~~~~~~~rdG~m~~~~~~~~~nY~pns~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ddf~Q~~~~~ 872 (902)
|+||+|||||||+|+ ++||||||+|+++++++.|||+|||++++...+.+..++..+.|.+.++.+.++|||+|||+||
T Consensus 357 g~N~~qlPvN~p~~~-~~n~~rdG~m~~~~~~~~~nY~pn~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Q~~~~~ 435 (492)
T PLN02609 357 GPNYLQLPVNAPKCA-HHNNHHEGFMNFMHRDEEVNYFPSRFDPVRHAERVPIPHPPLSGRREKCKIEKENNFKQPGERY 435 (492)
T ss_pred CCChhhCcccCCCCC-cCCCCcCCCccccCCCCCCCccCCCCCCCccCCCcCCCCceeccceEEccCCCCCcccchhHHH
Confidence 999999999999996 9999999999996669999999999998777777677788899999998777789999999999
Q ss_pred hhcCCHHHHHHHHHHHHHHhcCCChhhh
Q psy15197 873 SNVLDDAARDRMTTNIASVLKLAAPFIQ 900 (902)
Q Consensus 873 ~~~~~~~ek~~li~n~~~~l~~~~~~I~ 900 (902)
+ +|+++||++||+|++++|++|++.|+
T Consensus 436 ~-~~~~~~~~~lv~n~~~~l~~~~~~~~ 462 (492)
T PLN02609 436 R-SWSPDRQERFIKRWVDALSDPRVTHE 462 (492)
T ss_pred H-hCCHHHHHHHHHHHHHHhhcCchhHH
Confidence 8 99999999999999999999986543
No 6
>cd08155 catalase_clade_2 Clade 2 of the heme-binding enzyme catalase. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes, which is involved in the protection of cells from the toxic effects of peroxides. It catalyzes the conversion of hydrogen peroxide to water and molecular oxygen. Catalases also utilize hydrogen peroxide to oxidize various substrates such as alcohol or phenols. Clade 2 catalases are mostly found in bacteria and fungi; they have a large subunit size of 75 to 84 kDa, and bind a heme d group buried deep inside the structure. They appear to form tetramers. In eukaryotic cells, catalases are located in peroxisomes.
Probab=100.00 E-value=3.2e-119 Score=1008.54 Aligned_cols=402 Identities=41% Similarity=0.740 Sum_probs=386.2
Q ss_pred eeecccCCcccccc-eecchhhhhhhheecccCceeeEEEEEeeccCCCCCCCCCCCcccceeEEEccCCceeeeccccc
Q psy15197 499 VVFNITTPITIGYP-VTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWDLVGNNTP 577 (902)
Q Consensus 499 rvvHakg~ga~G~f-v~~~is~~~~A~if~~~gk~tpv~vRFS~~~g~~~~~D~~~d~RG~AiKf~~~eG~~D~v~~n~P 577 (902)
|++||||.|++|+| ++++++.+|+|.+|+.+|++|||++|||+++|+++++|+.+|+||||||||+++|+|||||||+|
T Consensus 8 R~vHAKG~ga~G~F~~t~d~~~~t~a~~f~~~g~~~pv~~RFS~~~g~~~s~D~~rd~RG~AiKf~~~~g~~D~v~nn~P 87 (443)
T cd08155 8 RVVHARGSGAHGYFQVYESLSQYTKAKFLQDPGKKTPVFVRFSTVAGSRGSADTVRDVRGFAVKFYTEEGNYDLVGNNIP 87 (443)
T ss_pred ccccccccceEEEEEECCchhHHHhhhhccCCCceeeEEEEcccCCCCCCCCccCCCCCeEEEEEEcCCCceeeeeecCC
Confidence 69999999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCChHHHHHHHhhccCCCCCCCCCc----hhHHHHHhcCchhHHHHHHHhcCCCCCCCcCcccccccceEEEEeCCC
Q psy15197 578 IFFVRDPFRFIHFIHSQKRNPVTHLRDW----DAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDN 653 (902)
Q Consensus 578 vFf~rd~~~F~~~i~a~~~~p~~~~~~~----~~~~~f~~~~pe~~~~~~~~~s~~~~p~s~~~~~~~s~~tf~~~n~~G 653 (902)
|||+|||++||+||||+||+|+|+++|+ +++|||++.|||++||++|++++||+|.||++|+|||+|||+|+|++|
T Consensus 88 vFf~rd~~~Fp~~i~a~k~~P~t~~~dp~~~~~~~~dF~~~~Pes~h~~~~l~s~rg~P~sy~~~~~~gvhtf~~vna~G 167 (443)
T cd08155 88 VFFIQDAIKFPDLIHAVKPEPHNEMPQAQSAHDTFWDFVSLQPESAHMVMWAMSDRAIPRSYRMMEGFGVHTFRLVNAQG 167 (443)
T ss_pred ceecCCHHHhhHHHhhccCCCCCCCCCcchhhhhHHHHHhcChHHHHHHHHHhcCCCCCCCcccCCcccccceEEEcCCC
Confidence 9999999999999999999999999998 569999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEEEEeCCCCCCCCHHHHHHhhCCCCChhHHHHHHHHhcCCCceEEEEEEEeCcchhccCCCCCCCCccccCCCC
Q psy15197 654 EPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLYDNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSD 733 (902)
Q Consensus 654 ~~~~vk~~~~p~~g~~~l~~~ea~~~~~~~~d~l~~dL~~~i~~g~~p~w~l~vQ~~~~~d~~~~~~~i~D~Tk~Wpe~~ 733 (902)
+++||||||+|.+|+++|+++||.++++.++|||++||+++|++|+||+|+|+||||+++|+.+|+||++|+||+||+++
T Consensus 168 ~~~~Vk~~~~p~qG~~~l~~eeA~~~~~~~~d~l~~dL~~~I~~G~~p~w~l~vQv~~~~d~~~~~f~~~D~Tk~WP~~~ 247 (443)
T cd08155 168 KSTFVKFHWKPVLGVHSLVWDEAQKIAGKDPDFHRRDLWEAIESGDYPEWELGVQLIDEEDEFKFDFDILDPTKLIPEEL 247 (443)
T ss_pred CEEEEEEEEEeCCCCCCCCHHHHHHhhCCCCchHHHHHHHHHhcCCCceEEEEEEEcCHHHHhcCCCCCCcCCCcCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEeeEEEEecCCCCCchhhhcccccCCCCCCCcccCCCCchhhhhhhhhHHHhhhhc-CCCCCCCCCCCCCCccCCCc
Q psy15197 734 FPLLPVGHMVLDKNPGNYYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRL-GANFNQIPVNCPYRVRVANY 812 (902)
Q Consensus 734 ~p~~~vG~l~l~~~~~~~~~~~eq~aF~P~~~v~Gi~~s~Dp~lq~R~~aY~~s~~~R~-g~N~~qlpvN~p~~~~~~~~ 812 (902)
+|+++||+|+||+|++|+|++|||++|+|+++||||++|+|||||+|+|||+|||+||+ |+||+|||||||+|+ |+||
T Consensus 248 ~p~i~~G~l~Ln~np~n~f~e~eq~aF~P~~lvpGI~~S~DpmLq~R~faY~ds~r~RlgG~N~~qlPvN~P~~~-v~n~ 326 (443)
T cd08155 248 VPVQRVGKMVLNRNPDNFFAETEQVAFCPANVVPGIDFSNDPLLQGRLFSYLDTQLSRLGGPNFHELPINRPVCP-VHNN 326 (443)
T ss_pred cceEEeEEEEEecCCcchhhhhhhhcccCcCCCCCccCCCCcccccccccchHhhhccCCCCChhhCccccccCC-cCCC
Confidence 99999999999999999999999999999999999999999999999999999999999 799999999999996 9999
Q ss_pred CCCCCccccCCCCCCccccCCCCCCC--CCC----CCCCCCcceeeeEEeeccCC-CCCccchHHHHhhcCCHHHHHHHH
Q psy15197 813 QRDAPMAIDNQNGAPNYYPNSFKGPE--PTP----RGAWSTYNATGDVKRYKTED-EDNFSQPRILWSNVLDDAARDRMT 885 (902)
Q Consensus 813 ~rdG~m~~~~~~~~~nY~pns~~~~~--~~~----~~~~~~~~~~g~~~~~~~~~-~ddf~Q~~~~~~~~~~~~ek~~li 885 (902)
||||+|+++++++.|||+|||+++.. +.+ .+..++.+++|.+.++.+.. +|||+|||+||+ +|+++||+|||
T Consensus 327 ~rDG~m~~~~~~~~~nY~Pns~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Q~~~ly~-~~~~~e~~~lv 405 (443)
T cd08155 327 QRDGHMRMTINKGRVNYFPNSLGAGPPRAASPAEGGFVHYPEKVEGPKIRIRSESFADHYSQARLFWN-SMSPVEKEHII 405 (443)
T ss_pred CcCCCccccCCCCCCcccCCCCCCCCccccccccccccCCccceecceEecccCCCCccccccHHHHh-cCCHHHHHHHH
Confidence 99999999776779999999999843 222 35567888999999987664 799999999998 99999999999
Q ss_pred HHHHHHhcCCC-hhhhcC
Q psy15197 886 TNIASVLKLAA-PFIQIL 902 (902)
Q Consensus 886 ~n~~~~l~~~~-~~I~~~ 902 (902)
+||+++|++|. ++||+|
T Consensus 406 ~n~~~~l~~~~~~~i~~~ 423 (443)
T cd08155 406 SAFTFELSKVETPEIRER 423 (443)
T ss_pred HHHHHHHhCCCcHHHHHH
Confidence 99999999999 689875
No 7
>PRK11249 katE hydroperoxidase II; Provisional
Probab=100.00 E-value=4.1e-118 Score=1050.73 Aligned_cols=425 Identities=40% Similarity=0.707 Sum_probs=399.9
Q ss_pred eeeccccCCCCCCCCcccce-eee--eeecccCCcccccc-eecchhhhhhhheecccCceeeEEEEEeeccCCCCCCCC
Q psy15197 476 SVGFLLSELSHPCPVSSKFE-ARI--VVFNITTPITIGYP-VTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADT 551 (902)
Q Consensus 476 ~kG~vL~~~~~~~~~~~~F~-a~i--rvvHakg~ga~G~f-v~~~is~~~~A~if~~~gk~tpv~vRFS~~~g~~~~~D~ 551 (902)
.+|.+|....++...-..|+ +|| |++||||.|++||| ++++++.+|+|.+|+.+|++|||++||||++|++|++|+
T Consensus 96 ~~Gp~ll~D~~l~ekl~hFdrEriPER~vHAkG~~a~G~F~~t~~~s~~t~A~~f~~~g~~tPv~~RFStv~G~~gs~Dt 175 (752)
T PRK11249 96 SRGPSLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQPYKSLSDITKAAFLQDPGKITPVFVRFSTVQGPRGSADT 175 (752)
T ss_pred CCCCchhhhHHHHHhhcccccccCchhheecccceEEEEEEECccHHHhhhcccccCCCceeeEEEecccCCCCCCCCCc
Confidence 45666666555555555676 677 99999999999999 999999999999999999999999999999999999999
Q ss_pred CCCcccceeEEEccCCceeeeccccceeccCChHHHHHHHhhccCCCCCCCCC----chhHHHHHhcCchhHHHHHHHhc
Q psy15197 552 NRDPRGFALKFYTEDGNWDLVGNNTPIFFVRDPFRFIHFIHSQKRNPVTHLRD----WDAFWDFISLLPETTHQVMILFS 627 (902)
Q Consensus 552 ~~d~RG~AiKf~~~eG~~D~v~~n~PvFf~rd~~~F~~~i~a~~~~p~~~~~~----~~~~~~f~~~~pe~~~~~~~~~s 627 (902)
+||+||||+||||+||||||||||+||||+|||++||+|+||+|++|++++++ ++++|||++.|||++||++|+||
T Consensus 176 ~rd~RGfAvKFyt~eGn~Dlvgnn~PvFfi~d~~kFpd~iha~k~~P~~~~~~~~~~~~~~~dF~s~~Pes~h~~~~~~s 255 (752)
T PRK11249 176 VRDIRGFATKFYTEEGNFDLVGNNTPVFFIQDAIKFPDFVHAVKPEPHNEIPQGQSAHDTFWDYVSLQPETLHNVMWAMS 255 (752)
T ss_pred CCCCCceEEEEEcCCCccceeeecCcceecCCHHHhhHHHhhcCCCCCccCcccCCChHHHHHHHhcChHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999997765 89999999999999999999999
Q ss_pred CCCCCCCcCcccccccceEEEEeCCCCeEEEEEEEEeCCCCCCCCHHHHHHhhCCCCChhHHHHHHHHhcCCCceEEEEE
Q psy15197 628 DRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLYDNIAKGNFPSWTFYI 707 (902)
Q Consensus 628 ~~~~p~s~~~~~~~s~~tf~~~n~~G~~~~vk~~~~p~~g~~~l~~~ea~~~~~~~~d~l~~dL~~~i~~g~~p~w~l~v 707 (902)
+||+|+||++|+|||+|||+|+|++|+.+||||||+|.+|+++++++||.++++.+||||++||+++|++|++|+|+|+|
T Consensus 256 ~r~~P~s~r~~~gfgvhtF~~vna~G~~~~VKfh~kP~~G~~~l~~~Ea~~~~~~dpDflr~DL~eaIe~G~~P~WeL~V 335 (752)
T PRK11249 256 DRGIPRSYRTMEGFGIHTFRLINAEGKATFVRFHWKPVAGKASLVWDEAQKLTGRDPDFHRRDLWEAIEAGDYPEYELGV 335 (752)
T ss_pred CCCCCCCcccCCcccccceEEEcCCCCEEEEEEEEEECCccccCCHHHHHHhcCCCccHHHHHHHHHHHcCCCceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCcchhccCCCCCCCCccccCCCCCCcEeeEEEEecCCCCCchhhhcccccCCCCCCCcccCCCCchhhhhhhhhHHH
Q psy15197 708 QVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNYYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDT 787 (902)
Q Consensus 708 Q~~~~~d~~~~~~~i~D~Tk~Wpe~~~p~~~vG~l~l~~~~~~~~~~~eq~aF~P~~~v~Gi~~s~Dp~lq~R~~aY~~s 787 (902)
|+|+++|++.|+|||+|+||+|||+++|+++||+||||+|++|+|+||||++|+|+|+||||++|+|||||+|+|||.||
T Consensus 336 Ql~~~~d~~~~~f~i~D~TK~WPe~~~P~~~VGkLtLnrn~~n~fae~eqvaF~P~~lvpGI~~S~DplLq~R~fsY~dt 415 (752)
T PRK11249 336 QLIPEEDEFKFDFDLLDPTKLIPEELVPVQRVGKMVLNRNPDNFFAETEQVAFHPGHIVPGIDFTNDPLLQGRLFSYTDT 415 (752)
T ss_pred EEcChHHhccCCCCCCcCCccCCcccCcceEeEEEEecCCCCcchhhhheeeccCcCCCCCccCCCCcccccccccchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcC-CCCCCCCCCCCCCccCCCcCCCCCccccCCCCCCccccCCCCC--CCCCC------CCCCCCcceeeeEEeec
Q psy15197 788 HIHRLG-ANFNQIPVNCPYRVRVANYQRDAPMAIDNQNGAPNYYPNSFKG--PEPTP------RGAWSTYNATGDVKRYK 858 (902)
Q Consensus 788 ~~~R~g-~N~~qlpvN~p~~~~~~~~~rdG~m~~~~~~~~~nY~pns~~~--~~~~~------~~~~~~~~~~g~~~~~~ 858 (902)
|++|+| +||+|||||||+|+ |+||||||+|++.++.+.|||+|||+++ |.+.+ .+..++..++|.+.|+.
T Consensus 416 q~~Rlgg~N~~qlpvN~p~~~-~~n~~rdG~~~~~~~~g~~~Y~pns~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~r~~ 494 (752)
T PRK11249 416 QISRLGGPNFHEIPINRPTCP-YHNFQRDGMHRMTIDTGPANYEPNSINGNWPRETPPAPKRGGFESYQERVEGNKVRER 494 (752)
T ss_pred hhccCCCCchhhcccccccCC-cCCCCcCCCCcccCCCCCCcccCCCCCCCCcccCcccccccCccCCCceeeccEEecc
Confidence 999997 99999999999996 9999999999997777799999999965 43332 24457778999999988
Q ss_pred cC-CCCCccchHHHHhhcCCHHHHHHHHHHHHHHhcCCC-hhhhcC
Q psy15197 859 TE-DEDNFSQPRILWSNVLDDAARDRMTTNIASVLKLAA-PFIQIL 902 (902)
Q Consensus 859 ~~-~~ddf~Q~~~~~~~~~~~~ek~~li~n~~~~l~~~~-~~I~~~ 902 (902)
+. ++|||+|||+||+ +|++.||+|||+|++++|++|. ++||+|
T Consensus 495 ~~~~~d~~~Q~~~~~~-~~~~~e~~~~~~~~~~~l~~v~~~~i~~r 539 (752)
T PRK11249 495 SPSFGDYYSQPRLFWL-SQTPIEQRHIIDAFSFELGKVVRPYIRER 539 (752)
T ss_pred CCCCCccccccHHHHh-cCCHHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 65 6899999999998 9999999999999999999998 779876
No 8
>cd00328 catalase Catalase heme-binding enzyme. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes, which is involved in the protection of cells from the toxic effects of peroxides. It catalyzes the conversion of hydrogen peroxide to water and molecular oxygen. Catalases also utilize hydrogen peroxide to oxidize various substrates such as alcohol or phenols. Most catalases exist as tetramers of 65KD subunits containing a protoheme IX group buried deep inside the structure. In eukaryotic cells, catalases are located in peroxisomes.
Probab=100.00 E-value=6e-117 Score=992.79 Aligned_cols=402 Identities=50% Similarity=0.860 Sum_probs=385.6
Q ss_pred eeecccCCcccccc-eecchhhhhhhheecccCceeeEEEEEeeccCCCCCCCCCCCcccceeEEEccCCceeeeccccc
Q psy15197 499 VVFNITTPITIGYP-VTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWDLVGNNTP 577 (902)
Q Consensus 499 rvvHakg~ga~G~f-v~~~is~~~~A~if~~~gk~tpv~vRFS~~~g~~~~~D~~~d~RG~AiKf~~~eG~~D~v~~n~P 577 (902)
|++||||.|++|+| ++++++.+|++++|+.+|+++||++|||+++|+++++|+.+|+|||||||++++|+|||||||+|
T Consensus 5 R~~HAKG~ga~G~F~v~~d~~~~t~a~~f~~~g~~~pv~vRFS~~~g~~~~~D~~~d~RG~AiKf~~~~g~~D~v~nn~P 84 (433)
T cd00328 5 RVVHARGAGAFGYFTAYGDWSDISAAAFFSAIGKKTPVFVRFSTVVGGAGSADTVRDPHGFATKFYTEEGNFDLVGNNTP 84 (433)
T ss_pred ccccCcccceEEEEEECCChhHHHhhhhccCCCceeeEEEecccCCCCCCCCccCCCCCeeEEEEecCCCceeEeeecCc
Confidence 68999999999999 99999999999999988999999999999999999999999999999999999999999999999
Q ss_pred eeccCChHHHHHHHhhccCCCCCCCCCchhHHHHHhcCchhHHHHHHHhcCCCCCCCcCcccccccceEEEEeCCCCeEE
Q psy15197 578 IFFVRDPFRFIHFIHSQKRNPVTHLRDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVY 657 (902)
Q Consensus 578 vFf~rd~~~F~~~i~a~~~~p~~~~~~~~~~~~f~~~~pe~~~~~~~~~s~~~~p~s~~~~~~~s~~tf~~~n~~G~~~~ 657 (902)
|||++||++|++|+||+|++|+|+++|++++|+|++.|||++||++|++++||+|+||++|+|||+|||+|+|++|+.+|
T Consensus 85 vFf~~d~~~F~~~i~a~k~~P~t~~~d~~~~~~f~~~~Pes~h~~~~~~s~r~~P~sy~~~~~~gvhtf~~vn~~G~~~~ 164 (433)
T cd00328 85 IFFIRDAIKFPDFIHAQKPNPQTALPDADRFWDFLSLRPESLHQVSFLFSDRGIPAAYRHMNGYGSHTFKLVNANGKVHY 164 (433)
T ss_pred eeecCCHHHhhHhhhccCCCCCCCCCCHHHHHHHHhcCHHHHHHHHHHhcCCCCCCCcccCCccccceEEEEcCCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCCHHHHHHhhCCCCChhHHHHHHHHhcCCCceEEEEEEEeCcchhccCCCCCCCCccccCCCCCCcE
Q psy15197 658 CKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLYDNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLL 737 (902)
Q Consensus 658 vk~~~~p~~g~~~l~~~ea~~~~~~~~d~l~~dL~~~i~~g~~p~w~l~vQ~~~~~d~~~~~~~i~D~Tk~Wpe~~~p~~ 737 (902)
|||||+|.+|+++|+++||.++++.++|||++||+++|++|++|+|+|+||||+++|+.+++|||+|+||+||++++|++
T Consensus 165 vk~~~~p~~G~~~l~~eea~~~~~~~~d~l~~dL~~~i~~G~~P~w~l~vQv~~~~d~~~~~f~~~D~Tk~WP~~~~p~i 244 (433)
T cd00328 165 VKFHWKTDQGIANLVWEEAARLAGEDPDYHRQDLFEAIEAGDYPSWELYIQVMTFNDAEKFPFNPLDPTKVWPEELVPLI 244 (433)
T ss_pred EEEEEEeCCCCCCCCHHHHHHhhcCCCchhhhhHHHHHhCCCCceEEEEEEEcCHHHHhcCCCCCCcCCcccCCcCcccE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEecCCCCCchhhhcccccCCCCCCCcccCCCCchhhhhhhhhHHHhhhhcCCCCCCCCCCCCCCccCCCcCCCCC
Q psy15197 738 PVGHMVLDKNPGNYYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGANFNQIPVNCPYRVRVANYQRDAP 817 (902)
Q Consensus 738 ~vG~l~l~~~~~~~~~~~eq~aF~P~~~v~Gi~~s~Dp~lq~R~~aY~~s~~~R~g~N~~qlpvN~p~~~~~~~~~rdG~ 817 (902)
+||+|+||+|++|+|+||||++|+|+++||||++|+|||||+|+|||+|||++|+|+||+|||||||+|+ ++||||||+
T Consensus 245 ~vG~l~Ln~n~~n~f~e~eq~aF~P~~lvpGI~~S~DplLq~R~faY~ds~~~R~g~N~~qlpvN~p~~~-~~n~~rdG~ 323 (433)
T cd00328 245 VVGKLVLNRNPLNFFAEVEQAAFDPGHIVPGVEFSEDPLLQGRLFSYADTQLYRLGPNFQQLPVNRPYAP-VHNNQRDGA 323 (433)
T ss_pred EeEEEEeecCCcchhhhhhhhccCCcCCCCCccCCCCcccccccccchhhhhcCCCCCHhhCcccCCCCC-cCCCCcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999996 999999999
Q ss_pred ccccCCCCCCccccCCCCCCCCCCCCCC----CCcceeeeEEeeccC-CCCCccchHHHHhhcCCHHHHHHHHHHHHHHh
Q psy15197 818 MAIDNQNGAPNYYPNSFKGPEPTPRGAW----STYNATGDVKRYKTE-DEDNFSQPRILWSNVLDDAARDRMTTNIASVL 892 (902)
Q Consensus 818 m~~~~~~~~~nY~pns~~~~~~~~~~~~----~~~~~~g~~~~~~~~-~~ddf~Q~~~~~~~~~~~~ek~~li~n~~~~l 892 (902)
|++.++.+.|||+|||++++...+.... ++..+.|.+.++.+. ++|||+|||+||+ +|+++||+|||+|++++|
T Consensus 324 m~~~~~~~~~nY~pns~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~Q~~~~~~-~~~~~ek~~lv~n~~~~l 402 (433)
T cd00328 324 GNMNDNTGVPNYEPNAKDVRYPAQGAPKFDRGHFSHWKSGVNREASTTNDDNFTQARLFYR-SLTPGQQKRLVDAFRFEL 402 (433)
T ss_pred ccccCCCCCCCccCCCCCCCCCCcccccccCCCceeeecceEEecccCCcchhhhhHHHHh-cCCHHHHHHHHHHHHHHH
Confidence 9996656699999999998765444322 355678888888754 7799999999998 999999999999999999
Q ss_pred cCC-ChhhhcC
Q psy15197 893 KLA-APFIQIL 902 (902)
Q Consensus 893 ~~~-~~~I~~~ 902 (902)
++| +++||+|
T Consensus 403 ~~v~~~~i~~r 413 (433)
T cd00328 403 ADAVSPQIQQR 413 (433)
T ss_pred hCCCCHHHHHH
Confidence 999 7889875
No 9
>cd08157 catalase_fungal Fungal catalases similar to yeast catalases A and T. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes, which is involved in the protection of cells from the toxic effects of peroxides. It catalyzes the conversion of hydrogen peroxide to water and molecular oxygen. Catalases also utilize hydrogen peroxide to oxidize various substrates such as alcohol or phenols. This family of fungal catalases has a relatively small subunit size, and binds a protoheme IX (heme b) group buried deep inside the structure. Fungal catalases also bind NADPH as a second redox-active cofactor. They form tetramers; in eukaryotic cells, catalases are typically located in peroxisomes. Saccharomyces cerevisiae catalase T is found in the cytoplasm, though.
Probab=100.00 E-value=4.4e-114 Score=980.11 Aligned_cols=403 Identities=50% Similarity=0.877 Sum_probs=387.3
Q ss_pred eeecccCCcccccc-eecchhhhhhhheecccCceeeEEEEEeeccCCCCCCCCCCCcccceeEEEccCCceeeeccccc
Q psy15197 499 VVFNITTPITIGYP-VTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWDLVGNNTP 577 (902)
Q Consensus 499 rvvHakg~ga~G~f-v~~~is~~~~A~if~~~gk~tpv~vRFS~~~g~~~~~D~~~d~RG~AiKf~~~eG~~D~v~~n~P 577 (902)
|++||||.|++|+| ++++++.+|+|++|+.+|++|||++||||++|+++++|+.||+||||||||+++|||||||||+|
T Consensus 21 R~vHAKG~ga~G~F~vt~d~s~~t~a~~f~~~gk~~pv~vRFSt~~g~~~~~D~~rd~RG~AiKf~t~eg~~DlV~nn~P 100 (451)
T cd08157 21 RVVHAKGAGAYGEFEVTDDISDITSADMLQGVGKKTPCLVRFSTVGGEKGSADTVRDPRGFAVKFYTEEGNWDWVFNNTP 100 (451)
T ss_pred ccccCCcccEEEEEEECCChhHHHhhhhccCCCceeeEEEecccCCCCCCCCCcCCCcCeEEEEEEcCCCceeeeeecCc
Confidence 89999999999999 99999999999999988999999999999999999999999999999999999999999999999
Q ss_pred eeccCChHHHHHHHhhccCCCCCCCCCchhHHHHHhcCchhHHHHHHHhcCCCCCCCcCcccccccceEEEEeCCCCeEE
Q psy15197 578 IFFVRDPFRFIHFIHSQKRNPVTHLRDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVY 657 (902)
Q Consensus 578 vFf~rd~~~F~~~i~a~~~~p~~~~~~~~~~~~f~~~~pe~~~~~~~~~s~~~~p~s~~~~~~~s~~tf~~~n~~G~~~~ 657 (902)
|||+|||++|++|+|+++++|+++++|++++|+|++.+||++|+++|+++++|+|.||++|+|||+|||+|+|++|+.+|
T Consensus 101 vFfird~~~F~~~i~a~~~~p~~~~~d~~~~~df~~~~Pes~~~~~~l~s~~g~p~sy~~~~~~g~htf~~vn~~G~~~~ 180 (451)
T cd08157 101 VFFIRDPIKFPHFIHSQKRDPQTNLKDSTMFWDYLSQNPESIHQVMILFSDRGTPASYRSMNGYSGHTYKWVNPDGSFKY 180 (451)
T ss_pred ccccCCHHHHHHHHHhcccCCCCCCCChHHHHHHHhhChHHHHHHHHHhccCCCCCCcccCCccccceeEEECCCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCCHHHHHHhhCCCCChhHHHHHHHHhcCCCceEEEEEEEeCcchhccCCCCCCCCccccCCCCCCcE
Q psy15197 658 CKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLYDNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLL 737 (902)
Q Consensus 658 vk~~~~p~~g~~~l~~~ea~~~~~~~~d~l~~dL~~~i~~g~~p~w~l~vQ~~~~~d~~~~~~~i~D~Tk~Wpe~~~p~~ 737 (902)
|||||+|.+|+++|+++||..+++.++|||++||+++|++|++|+|+|+||+|+++|+.+|+|||+|+||+||++++|++
T Consensus 181 vK~~~~P~~G~~~l~~~ea~~~~~~~~d~l~~dL~~~i~~g~~p~w~l~vQl~~~~d~~~~~f~i~D~Tk~WPe~~~P~~ 260 (451)
T cd08157 181 VQFHLKSDQGPKFLTGEEAARLAGSNPDYATKDLFEAIERGDYPSWTVYVQVMTPEQAEKLRFNIFDLTKVWPHKDFPLR 260 (451)
T ss_pred EEEEEEECCCcccCCHHHHHhhcCCCCChhHhhHHHHHhcCCCceEEEEEEEeCHHHHhhCCCCCCcCCcccCcccCccE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEecCCCCCchhhhcccccCCCCCCCcccCCCCchhhhhhhhhHHHhhhhcCCCCCCCCCCCCC-CccCCCc-CCC
Q psy15197 738 PVGHMVLDKNPGNYYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGANFNQIPVNCPY-RVRVANY-QRD 815 (902)
Q Consensus 738 ~vG~l~l~~~~~~~~~~~eq~aF~P~~~v~Gi~~s~Dp~lq~R~~aY~~s~~~R~g~N~~qlpvN~p~-~~~~~~~-~rd 815 (902)
+||+|+||+|++|+|++|||++|+|||++|||+||+|||||+|++||+|||+||+|+||+|||||||+ |+ ++|| |||
T Consensus 261 ~vG~l~Ln~~~~~~~~e~eq~aF~P~~~vpGi~ps~DpiLq~R~~aY~ds~~~R~g~N~~qlPvN~p~~~~-~~~~~~rd 339 (451)
T cd08157 261 PVGKLTLNENPKNYFAEIEQAAFSPSHMVPGIEPSADPVLQARLFSYPDAHRHRLGPNYQQLPVNRPKTSP-VYNPYQRD 339 (451)
T ss_pred EeEEEEecCCChhHHhHhhhhcccccccCCCccCCCCchhcccccchHHHHHhccCCChhhCCCCCCCcCC-CCCCcCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 86 6666 999
Q ss_pred CCccc-cCCCCCCccccCCCCCCC--CCCCCCCCCcceeeeEEeeccC-CCCCccchHHHHhhcCCHHHHHHHHHHHHHH
Q psy15197 816 APMAI-DNQNGAPNYYPNSFKGPE--PTPRGAWSTYNATGDVKRYKTE-DEDNFSQPRILWSNVLDDAARDRMTTNIASV 891 (902)
Q Consensus 816 G~m~~-~~~~~~~nY~pns~~~~~--~~~~~~~~~~~~~g~~~~~~~~-~~ddf~Q~~~~~~~~~~~~ek~~li~n~~~~ 891 (902)
|+|++ .|+++.|||.||++.+.. ..+....++..++|.+.++.+. ++|||+|||+||+++|++.||+|||+||+++
T Consensus 340 G~m~~~~~~~~~~nY~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~Q~~~~y~~~~~~~~k~~li~n~~~~ 419 (451)
T cd08157 340 GPMSVNGNYGGDPNYVSSILPPTYFKKRVDADGHHENWVGEVVAFLTEITDEDFVQPRALWEVVGKPGQQERFVKNVAGH 419 (451)
T ss_pred CCCcccCCCCCCCCcCCCCCCCCCcccccccCCCCceeeeeeEeecccccccchhccHHHHHhhCCHHHHHHHHHHHHHH
Confidence 99999 688999999999998733 3333456677899999999865 7899999999999788999999999999999
Q ss_pred hcCCChhhhcC
Q psy15197 892 LKLAAPFIQIL 902 (902)
Q Consensus 892 l~~~~~~I~~~ 902 (902)
|++|+++||+|
T Consensus 420 l~~~~~~i~~~ 430 (451)
T cd08157 420 LSGAPPEIRKR 430 (451)
T ss_pred HhCCCHHHHHH
Confidence 99999999876
No 10
>PF00199 Catalase: Catalase; InterPro: IPR011614 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen, serving to protect cells from its toxic effects []. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. Most catalases are mono-functional, haem-containing enzymes, although there are also bifunctional haem-containing peroxidase/catalases (IPR000763 from INTERPRO) that are closely related to plant peroxidases, and non-haem, manganese-containing catalases (IPR007760 from INTERPRO) that are found in bacteria []. Based on a phylogenetic analysis, catalases can be classified into clade 1, 2 and 3. Clade 1 contains small subunit catalases from plants and a subset of bacteria; clade 2 contains large subunit catalases from fungi and a second subset of bacteria; and clade 3 contains small subunit catalases from bacteria, fungi, protists, animals, and plants [, ]. This entry represent the core-forming domain of mono-functional, haem-containing catalases. It does not cover the region that carries an immune-responsive amphipathic octa-peptide that is found in the C-terminal of some catalases (IPR010582 from INTERPRO).; GO: 0004096 catalase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 7CAT_A 3NWL_D 4BLC_D 1TH3_D 1TH4_A 1TGU_B 1TH2_D 3RGS_D 3RE8_D 3RGP_C ....
Probab=100.00 E-value=3.3e-91 Score=788.51 Aligned_cols=339 Identities=46% Similarity=0.814 Sum_probs=299.6
Q ss_pred eeeecccCCcccccc-eecchhhhhhhheecccCceeeEEEEEeeccCCCCCCCCCCCcccceeEEEccCCceeeecccc
Q psy15197 498 IVVFNITTPITIGYP-VTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWDLVGNNT 576 (902)
Q Consensus 498 irvvHakg~ga~G~f-v~~~is~~~~A~if~~~gk~tpv~vRFS~~~g~~~~~D~~~d~RG~AiKf~~~eG~~D~v~~n~ 576 (902)
.|.+||||.|++|+| ++++++.++++++|+.+||++||++|||+++|+++++|+.+|+|||||||+++||+|||||+|+
T Consensus 44 ~R~~HAKG~~a~G~F~v~~~~~~~~~a~~F~~~Gk~~pv~vRFS~~~g~~~~~D~~~d~RG~AiKf~~~eG~~D~v~~n~ 123 (384)
T PF00199_consen 44 ERAVHAKGHGAKGEFEVTPDLPELTRAGLFAKPGKTYPVIVRFSNAGGNPGSPDTARDPRGMAIKFFTDEGNWDFVMNNT 123 (384)
T ss_dssp S-SSS-SEEEEEEEEEESSCGTTT---GGGSSTT-EEEEEEEEEESSS-TTS-TTSSSBEEEEEEEEETTEEEEEEEESS
T ss_pred cccccccceEEEEEEEECCcchHhhhcccccCCCcccceeeeecccCCCCCCCccCCCcceeEeEEecccccceeeeccc
Confidence 389999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeccCChHHHHHHHhhccCCCCCCCCCchhHHHHHhcCchhHHHHHHHhcCCCCCCCcCcccccccceEEEEeCCCCeE
Q psy15197 577 PIFFVRDPFRFIHFIHSQKRNPVTHLRDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPV 656 (902)
Q Consensus 577 PvFf~rd~~~F~~~i~a~~~~p~~~~~~~~~~~~f~~~~pe~~~~~~~~~s~~~~p~s~~~~~~~s~~tf~~~n~~G~~~ 656 (902)
||||++||++|++|+++++++|.++++++.++|+|++.+||++|+++|+++++++|.||++++|||+|||+|+|++|+.+
T Consensus 124 PvF~~~d~~~F~~~~~a~~~~p~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~p~s~~~~~y~s~~tf~~~~~~G~~~ 203 (384)
T PF00199_consen 124 PVFFARDPEKFLDFLKALKPDPATGLPDPNRLWAFLAAHPEALHQVAWLFSDRPTPASYAHMNYYSIHTFKFTNADGERR 203 (384)
T ss_dssp SS-S-SSGGGHHHHHHHHSBBTTTTSBCHHHHHHHHHHSGGGHHHHHHHHSGGGSBSSGGGS-EEEESEEEEEETTSEEE
T ss_pred cceeccCchhccchhhhhcccccccccChHHHHHHhhcChhhhhhhhhhhccCCCCCCccCCCcEeeeeEEeccccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeCCCCCCCCHHHHHHhhCCCCChhHHHHHHHHhcCCCceEEEEEEEeCcchhccCCCCCCCCccccCCCCCCc
Q psy15197 657 YCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLYDNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPL 736 (902)
Q Consensus 657 ~vk~~~~p~~g~~~l~~~ea~~~~~~~~d~l~~dL~~~i~~g~~p~w~l~vQ~~~~~d~~~~~~~i~D~Tk~Wpe~~~p~ 736 (902)
||||+|+|.+|++.++++|+.++.+.++|||++||+++|+++..++|+|+||+|+++|.+.++|+|+|+||+|||+++|+
T Consensus 204 ~vK~~~~P~~g~~~l~~~ea~~~~~~~pdyL~~dL~~rL~~~~~~~~~l~vQl~~~~d~~~~~~~i~D~T~~Wpe~~~P~ 283 (384)
T PF00199_consen 204 YVKYRLVPEQGVKPLTDEEAAKIAGRDPDYLRDDLYERLAAGGPVRWDLQVQLATPEDPMPFRFNIEDATKEWPEDRSPL 283 (384)
T ss_dssp EEEEEEEETTBTTBE-HHHHHHHHHH-TTHHHHHHHHHHHTTS-EEEEEEEEEEEGGGCTTSSSHTT-TTS--TTTTSEE
T ss_pred EEEEEecCCCCcccCCHHHhhhcccCCcchhhHHHHHHHhcCCceeEEEEEEecCcccccccCCCcccCCccCCCcCcee
Confidence 99999999999999999999988889999999999999995556799999999999999999999999999999999999
Q ss_pred EeeEEEEecCCCCCchhhhcccccCCCCCCCcccCCCCchhhhhhhhhHHHhhhhcCCCCCCCCCCCCCCccCCCcCCCC
Q psy15197 737 LPVGHMVLDKNPGNYYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGANFNQIPVNCPYRVRVANYQRDA 816 (902)
Q Consensus 737 ~~vG~l~l~~~~~~~~~~~eq~aF~P~~~v~Gi~~s~Dp~lq~R~~aY~~s~~~R~g~N~~qlpvN~p~~~~~~~~~rdG 816 (902)
++||+|+|++++++++++||+++|||||+++||+||+|||||+|++||++||++|+|+||+|||||||+|+ ++|+||||
T Consensus 284 ~~vg~L~l~~~~~~~~~~~e~l~F~P~~~~~Gi~~s~Dpil~aR~~aY~~s~~~R~~~n~~~lp~n~p~~~-~~~~~~dg 362 (384)
T PF00199_consen 284 IPVGTLTLNRNPPDFFAECEQLAFNPWHLPPGIEPSDDPILQARSFAYADSQRRRLGANYQQLPVNEPKCP-VHNNQRDG 362 (384)
T ss_dssp EEEEEEEEEEE-SSHHHHTTT----TT--BTTEEE-S-HHHHHHHHHHHHHHHHHTSTTGGGSGGGS-SSS--BSST---
T ss_pred eeeeeEeecccccchhhhhhhhhccccccccceecCCCcchhcchhhhhhhhhccCCcccccCCCCCCCCC-cCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999996 99999999
Q ss_pred CccccCCCCCCccccCCCCCC
Q psy15197 817 PMAIDNQNGAPNYYPNSFKGP 837 (902)
Q Consensus 817 ~m~~~~~~~~~nY~pns~~~~ 837 (902)
+|+++|+++.|||+|||++++
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~ 383 (384)
T PF00199_consen 363 AMRFGNQGSAPNYFPSSFGGP 383 (384)
T ss_dssp TT-TTTTTTS-SSSSCSSTTS
T ss_pred CCccCCCCCCCCcCCCCCCCC
Confidence 999999999999999999874
No 11
>cd08153 srpA_like Catalase-like heme-binding proteins similar to the uncharacterized srpA. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes involved in the protection of cells from the toxic effects of peroxides. It catalyses the conversion of hydrogen peroxide to water and molecular oxygen. Several other related protein families share the catalase fold and bind to heme, but do not necessarily have catalase activity. This family contains uncharacterized proteins similar to the Synechococcus elongatus PCC 7942 periplasmic protein srpA, of mostly bacterial origin. The plasmid-encoded srpA is regulated by sulfate, but does not seem to function in its uptake or metabolism.
Probab=100.00 E-value=3.8e-65 Score=558.75 Aligned_cols=281 Identities=26% Similarity=0.433 Sum_probs=266.9
Q ss_pred eeeeecccCCcccccc-eecchhhhhhhheecccCceeeEEEEEeeccCCCCCCCCCCCcccceeEEEccCC-ceeeecc
Q psy15197 497 RIVVFNITTPITIGYP-VTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDG-NWDLVGN 574 (902)
Q Consensus 497 ~irvvHakg~ga~G~f-v~~~is~~~~A~if~~~gk~tpv~vRFS~~~g~~~~~D~~~d~RG~AiKf~~~eG-~~D~v~~ 574 (902)
-.|.+|+||.|++|+| ++++++.++++++|. ++++||++|||+++|+++++|+.+|+|||||||++++| +|||||+
T Consensus 13 ~~R~~HaKG~~~~G~f~v~~~~~~~~~~~~f~--~~~~pv~vRfS~~~g~p~~~D~~~d~rG~AiK~~l~d~~~~D~v~~ 90 (295)
T cd08153 13 GFRRNHAKGICVSGTFTPSGAAASLSRAPLFS--GGSVPVTGRFSLGGGNPKAPDDAANPRGMALKFRLPDGEQWRMVMN 90 (295)
T ss_pred ccccccCceeeEEEEEEECCCcchhhhccccC--CCceEEEEEeccCCCCCCCCCCCCCCCeEEEEEEcCCCCeEeEeEe
Confidence 4689999999999999 999999999999997 78899999999999999999999999999999998888 7999999
Q ss_pred ccceeccCChHHHHHHHhhccCCCCCCCCCchhHHHHHhcCchhHHHHHHHhcCCCCCCCcCcccccccceEEEEeCCCC
Q psy15197 575 NTPIFFVRDPFRFIHFIHSQKRNPVTHLRDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNE 654 (902)
Q Consensus 575 n~PvFf~rd~~~F~~~i~a~~~~p~~~~~~~~~~~~f~~~~pe~~~~~~~~~s~~~~p~s~~~~~~~s~~tf~~~n~~G~ 654 (902)
|+||||++|+++|++|+++++++ .++.+++.++++|++.||++.+++.|+.+ +++|.||++++|||+|||+|+|++|+
T Consensus 91 n~pvF~~~~~~~f~~~~~a~~~~-~~~~~~~~~~~~f~~~~P~~~~~~~~~~~-~~~p~s~~~~~y~s~~~f~f~~~~G~ 168 (295)
T cd08153 91 SFPVFPVRTPEEFLALLKAIAPD-ATGKPDPAKLKAFLAAHPEAAAFLAWIKT-APPPASFANTTYYGVNAFYFTNANGK 168 (295)
T ss_pred cCcccccCCHHHHHHHHHhhCcC-cCCCCCHHHHHHHHhhCHHHHHHHHHHcC-CCCCCCcccCCccceeeEEEECCCCC
Confidence 99999999999999999999988 67889999999999999999999999876 48999999999999999999999999
Q ss_pred eEEEEEEEEeCCCCCCCCHHHHHHhhCCCCChhHHHHHHHHhcCCCceEEEEEEEeCcchhccCCCCCCCCccccCCCCC
Q psy15197 655 PVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLYDNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDF 734 (902)
Q Consensus 655 ~~~vk~~~~p~~g~~~l~~~ea~~~~~~~~d~l~~dL~~~i~~g~~p~w~l~vQ~~~~~d~~~~~~~i~D~Tk~Wpe~~~ 734 (902)
.++|||+|+|.+|++.|+++++. ..++|||++||.++|++|++ +|+|+||+++++| +|+|+||.|||+ +
T Consensus 169 ~~~vk~~~~P~~g~~~l~~~~~~---~~~~d~l~~~l~~~l~~g~~-~f~l~vQl~~~~d------~i~D~t~~Wpe~-~ 237 (295)
T cd08153 169 RQPVRWRFVPEDGVKYLSDEEAA---KLGPDFLFDELAQRLAQGPV-RWDLVLQLAEPGD------PTDDPTKPWPAD-R 237 (295)
T ss_pred EEEEEEEEEECCCCCCCCHHHhc---cCCcchhHHHHHHHHHhCCc-eEEEEEEEcCCCC------cCCCCCccCCCC-C
Confidence 99999999999999999998865 46899999999999999985 9999999999888 478999999998 8
Q ss_pred CcEeeEEEEecCCCCCchhhhcccccCCCCCCCcccCCCCchhhhhhhhhHHHhhhhc
Q psy15197 735 PLLPVGHMVLDKNPGNYYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRL 792 (902)
Q Consensus 735 p~~~vG~l~l~~~~~~~~~~~eq~aF~P~~~v~Gi~~s~Dp~lq~R~~aY~~s~~~R~ 792 (902)
|+++||+|+|++++++.+++||+++|+|||+++||++|+|||||+|++||++|+++|.
T Consensus 238 p~~~vg~l~l~~~~~~~~~~~e~l~F~P~~~~~gi~~~~Dpi~~~R~~aY~~s~~~R~ 295 (295)
T cd08153 238 KEVDAGTLTITKVAPDQGGACRDINFDPLVLPDGIEPSDDPLLAARSAAYAVSFSRRQ 295 (295)
T ss_pred ceeEEEEEEECCCCccchhhhhheeeCCccCCCCCCCCCChHHhhhhhHHHHHHhhcC
Confidence 9999999999999777779999999999999999999999999999999999999995
No 12
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.7e-64 Score=547.51 Aligned_cols=361 Identities=47% Similarity=0.812 Sum_probs=340.5
Q ss_pred cCCCcceEEEEEecCCCChhHHHhHHHHhccccchhhhccchhhhhhcccccceeeeeccccCcccccCCccccCCCCCC
Q psy15197 21 AGGKGRLHLVVIGHVDAGKSTLMGHLLYLMGRVSAREIHKHETESKKLGKQSFMYAWILDETGEESSCEIPVDTTSAGNP 100 (902)
Q Consensus 21 ~~~~~~~~v~v~G~~~~GKstL~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 100 (902)
++.|.++|++++||||||||||+++|||++|.|++++++|++.+|+++|++||+++|+||+.++|
T Consensus 2 ~~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeE--------------- 66 (428)
T COG5256 2 ASEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEE--------------- 66 (428)
T ss_pred CCCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhH---------------
Confidence 35688999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCccccccccCCCCCCCCcchhhhhccccccCCCCccchhcccCCCCccccccchhhhccCCCCCCCCCccccccccccc
Q psy15197 101 VDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFEDRETIIKTIGPHGPVPLEDTYYLDKLFH 180 (902)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (902)
T Consensus 67 -------------------------------------------------------------------------------- 66 (428)
T COG5256 67 -------------------------------------------------------------------------------- 66 (428)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCcccccccCCCCccccceecccCCccchhhhhhhhhcccccccccccccCCeEEeeeEEEEEECCeEEEEEeCCC
Q psy15197 181 FSGERNPERVVHAKGGGAFGYFEVRKLPAGVVKIEFACLVMRIVPLEGIASALNRGITMDVGQSQFETKTKYITLLDAPG 260 (902)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~e~~rGiTid~~~~~~~~~~~~i~lIDTPG 260 (902)
|+||+|++....+|+.+.+.++|+||||
T Consensus 67 ----------------------------------------------------RerGvTi~~~~~~fet~k~~~tIiDaPG 94 (428)
T COG5256 67 ----------------------------------------------------RERGVTIDVAHSKFETDKYNFTIIDAPG 94 (428)
T ss_pred ----------------------------------------------------HhcceEEEEEEEEeecCCceEEEeeCCc
Confidence 6899999999999999999999999999
Q ss_pred ccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHH
Q psy15197 261 HKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGA 340 (902)
Q Consensus 261 ~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~ 340 (902)
|+||+++|+.++++||++||||||..+.+|+||+..+|+++|+.+++.+|+..+||++||||+++|++++++++..++..
T Consensus 95 HrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde~rf~ei~~~v~~ 174 (428)
T COG5256 95 HRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDEERFEEIVSEVSK 174 (428)
T ss_pred hHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCcccHHHHHHhcCCCCCCCCCCceEEEeeEEeeCCCeEEEEE
Q psy15197 341 FLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNFKTPSRPLTKPLRMSVSDIYKSTGSGYCIAG 420 (902)
Q Consensus 341 ~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L~~l~~p~~~~~~pl~~~I~~i~~v~g~G~V~~G 420 (902)
+++.+|++.++++|+||||.+|+|+.+.+. .++||+||+|+++|+.+.+|.++.++||+++|.++|.+.++|+|..|
T Consensus 175 l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s~---~~pWY~GpTLleaLd~~~~p~~~~d~Plr~pI~~v~~i~~~gtv~vG 251 (428)
T COG5256 175 LLKMVGYNPKDVPFIPISGFKGDNLTKKSE---NMPWYKGPTLLEALDQLEPPERPLDKPLRLPIQDVYSISGIGTVPVG 251 (428)
T ss_pred HHHHcCCCccCCeEEecccccCCcccccCc---CCcCccCChHHHHHhccCCCCCCCCCCeEeEeeeEEEecCCceEEEE
Confidence 999999998899999999999999998663 79999999999999999999999999999999999999999999999
Q ss_pred EEEeeEeeCCCEEEEccCCcEEEEEEEEEceEeeeeeccCCeEEEeeeccccccceeeccccCCCCCCCCcccceeeeee
Q psy15197 421 RVETGVILAGEKVMVQPQNEVTTVKAVYVDEMSVSAAYAGDNVSVTLLNYDQQNVSVGFLLSELSHPCPVSSKFEARIVV 500 (902)
Q Consensus 421 rV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~~~~~v~~a~aGdiv~I~l~~~~~~~i~kG~vL~~~~~~~~~~~~F~a~irv 500 (902)
||++|.|++||+|++.|.+...+|++|++++.+++.+.+||++++.+.+...+++++|+++++..+++..+..|.+++.+
T Consensus 252 rVEsG~i~~g~~v~~~p~~~~~evksie~~~~~~~~a~~GD~i~~~vrgv~~~dI~~Gdv~~~~~n~~t~s~~f~a~i~v 331 (428)
T COG5256 252 RVESGVIKPGQKVTFMPAGVVGEVKSIEMHHEEISQAEPGDNVGFNVRGVEKNDIRRGDVIGHSDNPPTVSPEFTAQIIV 331 (428)
T ss_pred EEeeeeeccCCEEEEecCcceEEEeeeeecccccccCCCCCeEEEEecCCchhccCCccEeccCCCCcccccceEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999988878899999999
Q ss_pred ecccCCcccccc-eecchhh--hhh-hheecccCc
Q psy15197 501 FNITTPITIGYP-VTHDITH--LTK-AAIFSEIGK 531 (902)
Q Consensus 501 vHakg~ga~G~f-v~~~is~--~~~-A~if~~~gk 531 (902)
+.+++.+..||- +.|.... .|+ +++..+.++
T Consensus 332 l~~p~~i~~Gyt~vlh~hta~~a~~~~~l~~k~d~ 366 (428)
T COG5256 332 LWHPGIITSGYTPVLHAHTAQVACRIAELLSKLDP 366 (428)
T ss_pred EecCccccCCCccEEEecccceeeeHHHHHHhhCc
Confidence 999999999998 7664333 333 355555444
No 13
>cd08150 catalase_like Catalase-like heme-binding proteins and protein domains. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes involved in the protection of cells from the toxic effects of peroxides. It catalyses the conversion of hydrogen peroxide to water and molecular oxygen. Several other related protein families share the catalase fold and bind to heme, but do not necessarily have catalase activity.
Probab=100.00 E-value=5.5e-61 Score=523.22 Aligned_cols=277 Identities=26% Similarity=0.370 Sum_probs=260.9
Q ss_pred eeeecccCCcccccc-eecchhhhhhhheecccCceeeEEEEEeeccCCCCCCCCCCCcccceeEEEcc--CCceeeecc
Q psy15197 498 IVVFNITTPITIGYP-VTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTE--DGNWDLVGN 574 (902)
Q Consensus 498 irvvHakg~ga~G~f-v~~~is~~~~A~if~~~gk~tpv~vRFS~~~g~~~~~D~~~d~RG~AiKf~~~--eG~~D~v~~ 574 (902)
.|.+|++|.|++|+| ++++++.++++.+|+ .|+++||++|||+++| .+|+.+|+|||||||+++ +++||||||
T Consensus 2 ~R~~Hakg~~a~G~F~v~~~~~~~~~~~~f~-~~~~~pv~~RfS~~~g---~~D~~~~~RG~AiKf~~~~~~~~~D~v~~ 77 (283)
T cd08150 2 LRGQHFQGTCAFGTFEVLADLKERLRVGLFA-EGKVYPAYIRFSNGAG---IDDTKPDIRGFAIKFTGVADAGTLDFVLN 77 (283)
T ss_pred cCcccCCeeeEEEEEEEcCCcchhhhccccc-CCCeeEEEEEeCCCCC---CcccCCCCceEEEEEEecCCCceEeEEEe
Confidence 378999999999999 999999999999997 5889999999999988 689999999999999999 678999999
Q ss_pred ccceeccCChHHHHHHHhhccCCCCCCCCCchhHHHHHhcCchhHHHHHHHhcCCCCCCCcCcccccccceEEEEeCCCC
Q psy15197 575 NTPIFFVRDPFRFIHFIHSQKRNPVTHLRDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNE 654 (902)
Q Consensus 575 n~PvFf~rd~~~F~~~i~a~~~~p~~~~~~~~~~~~f~~~~pe~~~~~~~~~s~~~~p~s~~~~~~~s~~tf~~~n~~G~ 654 (902)
|+||||++|++.|++++++..+.+ +++++++++++|+..||++++++.++++ +.|.||++++|||+|||+|+|++|+
T Consensus 78 n~pvF~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~--~~p~s~~~~~y~s~~~f~f~~~~gk 154 (283)
T cd08150 78 NTPVFFIRNTSDYEDFVAEFARSA-RGEPPLDFIAWYVEKRPEDLPNLLGARS--QVPDSYAAARYFSQVTFAFINGAGK 154 (283)
T ss_pred CCCcCccCCHHHHHHHHHhccCCc-cCCCChHHHHHHHHhChhHHHHHHHHhC--CCCCCccccceEeeeeEEEeccCCE
Confidence 999999999999999999987766 6789999999999999999999999876 8999999999999999999999999
Q ss_pred eEEEEEEEEeCCCCCCCCHHHHHHhhCCCCChhHHHHHHHHhcCCCceEEEEEEEeCcchhccCCCCCCCCccccCCCCC
Q psy15197 655 PVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLYDNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDF 734 (902)
Q Consensus 655 ~~~vk~~~~p~~g~~~l~~~ea~~~~~~~~d~l~~dL~~~i~~g~~p~w~l~vQ~~~~~d~~~~~~~i~D~Tk~Wpe~~~ 734 (902)
.+||||+|+|.+|.+.++++++ .+.++|||+++|.++|++|++ +|+|+||+++++|.+ +|+|+||+||++ +
T Consensus 155 ~~~vr~~~~P~~g~~~l~~~~~---~~~~~d~L~~~l~~rl~~~~~-~~~l~vQl~~~~d~~----~i~D~t~~Wpe~-~ 225 (283)
T cd08150 155 YRVVRSKDNPVDGIPSLEDHEL---EARPPDYLREELTERLQRGPV-VYDFRIQLNDDTDAT----TIDNPTILWPTE-H 225 (283)
T ss_pred EEEEEEEecccCCCcccchhhh---cCCCcCHHHHHHHHHHHhCCc-eEEEEEEEccccccC----CCCCCCcCCCCC-C
Confidence 9999999999999999998774 357999999999999999986 999999999999874 799999999999 9
Q ss_pred CcEeeEEEEecCCCCCchhhhcccccCCCCCCCcccCCCC--chhhhhhhhhHHHhhhhc
Q psy15197 735 PLLPVGHMVLDKNPGNYYAEIEQLAFNPNNLIPGIEPTPD--KMLQGRLHSYIDTHIHRL 792 (902)
Q Consensus 735 p~~~vG~l~l~~~~~~~~~~~eq~aF~P~~~v~Gi~~s~D--p~lq~R~~aY~~s~~~R~ 792 (902)
|+++||+|+|++++.+ ++||+++|||.++++||++|+| ||||+|+++|.+|+++|+
T Consensus 226 p~~~vg~l~i~~~~~~--~~~~~~~f~p~~~~~gi~~~~d~g~i~~~R~~~Y~~S~~~R~ 283 (283)
T cd08150 226 PVEAVAKITIPPPTFT--AAQEAFAFNPFTPWHGLLETNDLGPILEVRRRVYTSSQGLRH 283 (283)
T ss_pred CceEEEEEEECCCCCc--HHHHHHhcCCCCCCCccCCCCCchHHHHHHHHHHHHHHHhhC
Confidence 9999999999987766 8899999999999999999999 999999999999999996
No 14
>cd08151 AOS Allene oxide synthase. Allene oxide synthase converts a fatty acid hydroperoxide to an allene oxide, which is an unstable epoxide. In corals, the enzyme is part of a eiconaosid synthesis pathway that is initiated by a lipoxygenase, which generates the fatty acid hydroperoxides in the first step. The structure of allene oxide synthase closely resembles that of catalase, but allene oxide synthase does not have catalase activity.
Probab=100.00 E-value=8.5e-61 Score=530.33 Aligned_cols=275 Identities=21% Similarity=0.251 Sum_probs=248.3
Q ss_pred eeeeecccCCcccccc-eecchhhhhhhheecccCceeeEEEEEeeccCCCCCCCCCCCcccceeEEEcc----CCceee
Q psy15197 497 RIVVFNITTPITIGYP-VTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTE----DGNWDL 571 (902)
Q Consensus 497 ~irvvHakg~ga~G~f-v~~~is~~~~A~if~~~gk~tpv~vRFS~~~g~~~~~D~~~d~RG~AiKf~~~----eG~~D~ 571 (902)
..|.+|+||.|++|+| ++++++ ++++.+|+ .|+++||++||||++|+ ++|+.+|+|||||||+++ +|+|||
T Consensus 26 g~R~~HaKG~ga~G~F~v~~d~~-~~~a~~F~-~g~~~pv~~RfS~~~g~--~~D~~~d~RG~AiKf~~~~~~~~~~~D~ 101 (328)
T cd08151 26 GRRGTHTIGVGAKGVLTVLAESD-FPEHAFFT-AGKRFPVILRHANIVGG--DDDASLDGRGAALRFLNAGDDDAGPLDL 101 (328)
T ss_pred CcccccCceeeEEEEEEEcCCch-hhhhhhcC-CCCeEEEEEEecCCCCC--ccccccCCCeEEEEEeccCCCCCCceeE
Confidence 4689999999999999 999999 99999996 58899999999999998 789999999999999999 789999
Q ss_pred eccccceeccCChHHHHHHHhhccCCCCCCCCCchhHHHHHhcCchhHHHHHHHhcCCCCCCCcCcccccccceEEEEeC
Q psy15197 572 VGNNTPIFFVRDPFRFIHFIHSQKRNPVTHLRDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNK 651 (902)
Q Consensus 572 v~~n~PvFf~rd~~~F~~~i~a~~~~p~~~~~~~~~~~~f~~~~pe~~~~~~~~~s~~~~p~s~~~~~~~s~~tf~~~n~ 651 (902)
||||+||||++|+++|++|+++..+ .....|...+|++..+ .| .+.+++|.||++++|||+|||+|+|+
T Consensus 102 v~~n~pvF~~~d~~~F~~~~~a~~p---------~~~~~~~~~~p~~~~~-~~-~~~~~~p~s~~~~~y~s~~~f~f~~~ 170 (328)
T cd08151 102 VMNTGESFGFWTAASFADFAGAGLP---------FREKAAKLRGPLARYA-VW-ASLRRAPDSYTDLHYYSQICYEFVAL 170 (328)
T ss_pred EEecCCccccCCHHHHHHHHhcCCC---------cchhhhhhcCHHHHhh-hh-hcccCCCCCcccccceeEeeEEEECC
Confidence 9999999999999999999998532 2345566678877644 33 46689999999999999999999999
Q ss_pred CCCeEEEEEEEEe-CCCCCCCCHHHHHH------------h--hCCCCChhHHHHHHHHhcCCCceEEEEEEEeCcchhc
Q psy15197 652 DNEPVYCKFHFRT-DQGIKNISPQTATK------------L--AATDPDYSIRDLYDNIAKGNFPSWTFYIQVMTFEEAK 716 (902)
Q Consensus 652 ~G~~~~vk~~~~p-~~g~~~l~~~ea~~------------~--~~~~~d~l~~dL~~~i~~g~~p~w~l~vQ~~~~~d~~ 716 (902)
+|+.+||||||+| .+|++.++.+++.+ . .+.++|||++||+++|++|+ ++|+|+||+++++|..
T Consensus 171 ~G~~~~vK~~~~P~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~L~~dl~~rl~~g~-~~~~l~iQl~~~~d~~ 249 (328)
T cd08151 171 DGKSRYARFRLLPPDADTEWDLGEDVLETIFQRPRLYLPRLPGDTRPKDYLRNEFRQRLQSPG-VRYRLQIQLREVSDDA 249 (328)
T ss_pred CCCEEEEEEEEEECCCCccccchhhhhhcccccccccchhhcccCCCccHHHHHHHHHHHhCC-ceEEEEEEEechhhcC
Confidence 9999999999999 56889998888642 1 24589999999999999996 5999999999998865
Q ss_pred cCCCCCCCCccccCCCCCCcEeeEEEEecCCCCCchhhhcccccCCCCCCC--cccCCCCc-----hhhhhhhhhHHHhh
Q psy15197 717 TYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNYYAEIEQLAFNPNNLIP--GIEPTPDK-----MLQGRLHSYIDTHI 789 (902)
Q Consensus 717 ~~~~~i~D~Tk~Wpe~~~p~~~vG~l~l~~~~~~~~~~~eq~aF~P~~~v~--Gi~~s~Dp-----~lq~R~~aY~~s~~ 789 (902)
+++|+|+||+|||+++|+++||+|+|+++++ +++|||++|||||+++ ||++|.|| |+++|+.+|+.|++
T Consensus 250 --~~~i~D~T~~Wpe~~~P~i~vg~l~l~~~~~--~~~~e~l~F~P~~~~~~~gi~~~~~~~d~gsi~~~R~~vY~~s~~ 325 (328)
T cd08151 250 --TAVALDCCRPWDEDEHPWLDLAVVRLGAPLP--NDELEKLAFNPGNTPESLGLPLAYCADDYASLGHLRSLVYEISQR 325 (328)
T ss_pred --CCCCCCCCccCCcccCceEEEEEEEECCCCC--hhhhHhhcccccccCCCCCccCCCChHHhhhHHHHHHHHHHHHHh
Confidence 6799999999999999999999999999987 4699999999999999 99999999 99999999999999
Q ss_pred hh
Q psy15197 790 HR 791 (902)
Q Consensus 790 ~R 791 (902)
+|
T Consensus 326 ~R 327 (328)
T cd08151 326 LR 327 (328)
T ss_pred hc
Confidence 98
No 15
>cd08152 y4iL_like Catalase-like heme-binding proteins similar to the uncharacterized y4iL. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes involved in the protection of cells from the toxic effects of peroxides. It catalyses the conversion of hydrogen peroxide to water and molecular oxygen. Several other related protein families share the catalase fold and bind to heme, but do not necessarily have catalase activity. This family contains uncharacterized proteins similar to Rhizobium sp. NGR234 y4iL, of mostly bacterial origin.
Probab=100.00 E-value=8.7e-57 Score=494.63 Aligned_cols=277 Identities=21% Similarity=0.241 Sum_probs=247.9
Q ss_pred eeeecccCC-cccccc-eecchhhhhhhheecccCceeeEEEEEeeccCCCCCCCCCCCcccceeEEEccCC--------
Q psy15197 498 IVVFNITTP-ITIGYP-VTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDG-------- 567 (902)
Q Consensus 498 irvvHakg~-ga~G~f-v~~~is~~~~A~if~~~gk~tpv~vRFS~~~g~~~~~D~~~d~RG~AiKf~~~eG-------- 567 (902)
.|.+|+||. |.+|+| ++.+++.++++++|+. |+.+||++|||+++|+ +.+|..+|+|||||||++++|
T Consensus 4 ~R~~HaKg~G~v~G~F~v~~~~~~~~~~~~F~~-~~~~pv~vRfS~~~~~-~~~D~~~~~RG~AiK~~~~~G~~l~~~~~ 81 (305)
T cd08152 4 LRDAHAKSHGCLKAEFTVLDDLPPELAQGLFAE-PGTYPAVIRFSNAPGD-ILDDSVPDPRGMAIKVLGVPGEKLLPEED 81 (305)
T ss_pred cccccCcccccceEEEEECCCchHHHhhhhcCC-CCeEEEEEEecCCCCC-CCCcccCCCCeEEEEEEcCcccccccccC
Confidence 478999998 569999 9999999999999986 7899999999999999 789999999999999999977
Q ss_pred --ceeeeccccceeccCChHHHHHHHhhccCCCCCCCCCchhHHHHHhc-CchhHHHHHHHhcC-------CCCCCCcCc
Q psy15197 568 --NWDLVGNNTPIFFVRDPFRFIHFIHSQKRNPVTHLRDWDAFWDFISL-LPETTHQVMILFSD-------RGIPDGFRH 637 (902)
Q Consensus 568 --~~D~v~~n~PvFf~rd~~~F~~~i~a~~~~p~~~~~~~~~~~~f~~~-~pe~~~~~~~~~s~-------~~~p~s~~~ 637 (902)
+|||||||+||||++|+++|++|++++++. ++. +++.++|+.. +|+...++.++... ...|.||++
T Consensus 82 ~~~~D~v~~n~pvF~~~d~~~f~~~~~a~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~~ 157 (305)
T cd08152 82 ATTQDFVLVNHPVFFARDAKDYLALLKLLART--TSL--PDGAKAALSAPLRGALRVLEAAGGESPTLKLGGHPPAHPLG 157 (305)
T ss_pred CcccceeeecCceeecCCHHHHHHHHHHHHhh--cCC--chHHHHHHHHHHHHHHHHHHhhcccccccccccCCCCCccc
Confidence 799999999999999999999999999854 343 5677778887 88877777766432 457899999
Q ss_pred ccccccceEEEEeCCCCeEEEEEEEEeCCCCCC-CCHHHHHHhhCCCCChhHHHHHHHHhcCCCceEEEEEEEeCcchhc
Q psy15197 638 MHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKN-ISPQTATKLAATDPDYSIRDLYDNIAKGNFPSWTFYIQVMTFEEAK 716 (902)
Q Consensus 638 ~~~~s~~tf~~~n~~G~~~~vk~~~~p~~g~~~-l~~~ea~~~~~~~~d~l~~dL~~~i~~g~~p~w~l~vQ~~~~~d~~ 716 (902)
++|||+|+|+|+|. +|||+|+|.+|... ++.+++ ..+.++|||+++|.++|++|++ +|+|+||+++++|.+
T Consensus 158 ~~y~s~~~fr~g~~-----~vk~~~~P~~~~~~~l~~~~~--~~~~~~d~L~~~L~~~l~~g~~-~f~l~vQl~~~~d~~ 229 (305)
T cd08152 158 ETYWSQAPYRFGDY-----VAKYSVVPASPALPALTGKEL--DLTDDPDALREALADFLAENDA-EFEFRIQLCTDLEKM 229 (305)
T ss_pred cceecccceeEcce-----eEEEEEEECCCccccCchhhh--hcCCCccHHHHHHHHHHHhCCc-eEEEEEEecCchhhC
Confidence 99999999999874 99999999998876 666665 2367999999999999999986 999999999999865
Q ss_pred cCCCCCCCCccccCCCCCCcEeeEEEEecCCCC----CchhhhcccccCCCCCCCcccCCCCchhhhhhhhhHHHhhhhc
Q psy15197 717 TYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPG----NYYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRL 792 (902)
Q Consensus 717 ~~~~~i~D~Tk~Wpe~~~p~~~vG~l~l~~~~~----~~~~~~eq~aF~P~~~v~Gi~~s~Dp~lq~R~~aY~~s~~~R~ 792 (902)
+|+|+||+|||+++|+++||+|+|+++.. +..+.||+++|||||+++||+|| |||+++|..+|+.|+++|+
T Consensus 230 ----pi~D~tv~W~e~~~p~i~vg~l~i~~~~~~~~~~~~~~~~~l~F~P~~~~~g~~p~-g~i~r~R~~vY~~S~~~R~ 304 (305)
T cd08152 230 ----PIEDASVEWPEALSPFVPVATITIPPQDFDSPARQRAFDDNLSFNPWHGLAEHRPL-GSINRARKAVYEASSAFRH 304 (305)
T ss_pred ----CCCcCCccCCCccCCCeEEEEEEECCCCccCHHHHhhhhhccccCccccccccCcC-hHHHHHHHHHHHHHHHHhc
Confidence 79999999999999999999999998765 66778999999999999999999 8999999999999999997
Q ss_pred C
Q psy15197 793 G 793 (902)
Q Consensus 793 g 793 (902)
.
T Consensus 305 ~ 305 (305)
T cd08152 305 E 305 (305)
T ss_pred C
Confidence 4
No 16
>PLN00043 elongation factor 1-alpha; Provisional
Probab=100.00 E-value=3.3e-54 Score=496.24 Aligned_cols=347 Identities=42% Similarity=0.737 Sum_probs=321.3
Q ss_pred CCCcceEEEEEecCCCChhHHHhHHHHhccccchhhhccchhhhhhcccccceeeeeccccCcccccCCccccCCCCCCC
Q psy15197 22 GGKGRLHLVVIGHVDAGKSTLMGHLLYLMGRVSAREIHKHETESKKLGKQSFMYAWILDETGEESSCEIPVDTTSAGNPV 101 (902)
Q Consensus 22 ~~~~~~~v~v~G~~~~GKstL~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 101 (902)
..|.++||+++||+|||||||+++||+.+|.++++.+.+.+.++.+.|+++|+|+|++|..++|
T Consensus 3 ~~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~E---------------- 66 (447)
T PLN00043 3 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAE---------------- 66 (447)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhH----------------
Confidence 3578899999999999999999999999999999999998889999999999999999988876
Q ss_pred CccccccccCCCCCCCCcchhhhhccccccCCCCccchhcccCCCCccccccchhhhccCCCCCCCCCcccccccccccc
Q psy15197 102 DSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFEDRETIIKTIGPHGPVPLEDTYYLDKLFHF 181 (902)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (902)
T Consensus 67 -------------------------------------------------------------------------------- 66 (447)
T PLN00043 67 -------------------------------------------------------------------------------- 66 (447)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCcccccccCCCCccccceecccCCccchhhhhhhhhcccccccccccccCCeEEeeeEEEEEECCeEEEEEeCCCc
Q psy15197 182 SGERNPERVVHAKGGGAFGYFEVRKLPAGVVKIEFACLVMRIVPLEGIASALNRGITMDVGQSQFETKTKYITLLDAPGH 261 (902)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~e~~rGiTid~~~~~~~~~~~~i~lIDTPG~ 261 (902)
++||+|++.....++++++.++|||||||
T Consensus 67 ---------------------------------------------------r~rGiTi~~~~~~~~~~~~~i~liDtPGh 95 (447)
T PLN00043 67 ---------------------------------------------------RERGITIDIALWKFETTKYYCTVIDAPGH 95 (447)
T ss_pred ---------------------------------------------------HhcCceEEEEEEEecCCCEEEEEEECCCH
Confidence 67999999999999999999999999999
Q ss_pred cchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCC--CchHHHHHHHHHHHH
Q psy15197 262 KDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTV--SWSQDRFQEIVTKLG 339 (902)
Q Consensus 262 ~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~--~~~~~~~~~i~~~l~ 339 (902)
++|+.++..+++.+|++|||||+++|.+|.+++...|+++++.++..++++++||++||||+. +++.+++.++.+++.
T Consensus 96 ~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~ 175 (447)
T PLN00043 96 RDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVS 175 (447)
T ss_pred HHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhhhHHHHHHHHHHHH
Confidence 999999999999999999999999998988888889999999999999999888999999987 466788999999999
Q ss_pred HhhhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCcccHHHHHHhcCCCCCCCCCCceEEEeeEEeeCCCeEEEE
Q psy15197 340 AFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNFKTPSRPLTKPLRMSVSDIYKSTGSGYCIA 419 (902)
Q Consensus 340 ~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L~~l~~p~~~~~~pl~~~I~~i~~v~g~G~V~~ 419 (902)
.+++..++...+++++++||++|+||.+.+. .++||+|++|+++|+++++|.+..++|++|+|+++|++++.|+|+.
T Consensus 176 ~~l~~~g~~~~~~~~ipiSa~~G~ni~~~~~---~~~Wy~g~tLl~~l~~i~~p~~~~~~plr~~I~~v~~~~g~G~vv~ 252 (447)
T PLN00043 176 SYLKKVGYNPDKIPFVPISGFEGDNMIERST---NLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPV 252 (447)
T ss_pred HHHHHcCCCcccceEEEEecccccccccccc---CCcccchHHHHHHHhhcCCCccccCCCcEEEEEEEEEeCCcEEEEE
Confidence 9999999877778999999999999987544 4899999999999999988888889999999999999999999999
Q ss_pred EEEEeeEeeCCCEEEEccCCcEEEEEEEEEceEeeeeeccCCeEEEeeeccccccceeeccccCC-CCCCCCcccceeee
Q psy15197 420 GRVETGVILAGEKVMVQPQNEVTTVKAVYVDEMSVSAAYAGDNVSVTLLNYDQQNVSVGFLLSEL-SHPCPVSSKFEARI 498 (902)
Q Consensus 420 GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~~~~~v~~a~aGdiv~I~l~~~~~~~i~kG~vL~~~-~~~~~~~~~F~a~i 498 (902)
|+|.+|.|++||.|.++|.+...+|++|++++.++++|.|||.|+|.+.+++..++++|++|++. ..++..+.+|+|++
T Consensus 253 G~V~~G~l~~Gd~v~~~P~~~~~~VksI~~~~~~v~~a~aGd~v~i~l~~~~~~~i~rG~vl~~~~~~p~~~~~~F~A~i 332 (447)
T PLN00043 253 GRVETGVIKPGMVVTFGPTGLTTEVKSVEMHHESLQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTSQV 332 (447)
T ss_pred EEEECCEEeeCCEEEEcCCCCEEEEEEEEECCeEeCEecCCCeEEEEECCCCHhhCCCccEEccCCCCCCccccEEEEEE
Confidence 99999999999999999999999999999999999999999999999998888899999999987 45667789999999
Q ss_pred eeecccCCcccccc-eecchh
Q psy15197 499 VVFNITTPITIGYP-VTHDIT 518 (902)
Q Consensus 499 rvvHakg~ga~G~f-v~~~is 518 (902)
.+++++..+..||. +.|..+
T Consensus 333 ~~l~~~~~i~~gy~~~~~~~t 353 (447)
T PLN00043 333 IIMNHPGQIGNGYAPVLDCHT 353 (447)
T ss_pred EEECCCCCCCCCCeEEEEEcc
Confidence 99999999999997 555433
No 17
>KOG0458|consensus
Probab=100.00 E-value=5.3e-54 Score=481.95 Aligned_cols=348 Identities=56% Similarity=0.906 Sum_probs=331.4
Q ss_pred HHhcCCCcceEEEEEecCCCChhHHHhHHHHhccccchhhhccchhhhhhcccccceeeeeccccCcccccCCccccCCC
Q psy15197 18 REQAGGKGRLHLVVIGHVDAGKSTLMGHLLYLMGRVSAREIHKHETESKKLGKQSFMYAWILDETGEESSCEIPVDTTSA 97 (902)
Q Consensus 18 ~~~~~~~~~~~v~v~G~~~~GKstL~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 97 (902)
.++..++..++++++||+|+|||||+++|||..|.|+.++++|++++++.+|++||+|+|++|+.++|
T Consensus 169 ~~q~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eE------------ 236 (603)
T KOG0458|consen 169 DEQSDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEE------------ 236 (603)
T ss_pred ccccCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhh------------
Confidence 34555678899999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCccccccccCCCCCCCCcchhhhhccccccCCCCccchhcccCCCCccccccchhhhccCCCCCCCCCcccccccc
Q psy15197 98 GNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFEDRETIIKTIGPHGPVPLEDTYYLDK 177 (902)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (902)
T Consensus 237 -------------------------------------------------------------------------------- 236 (603)
T KOG0458|consen 237 -------------------------------------------------------------------------------- 236 (603)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCCcccccccCCCCccccceecccCCccchhhhhhhhhcccccccccccccCCeEEeeeEEEEEECCeEEEEEe
Q psy15197 178 LFHFSGERNPERVVHAKGGGAFGYFEVRKLPAGVVKIEFACLVMRIVPLEGIASALNRGITMDVGQSQFETKTKYITLLD 257 (902)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~e~~rGiTid~~~~~~~~~~~~i~lID 257 (902)
|+||+|++.....|+.+.+.++|+|
T Consensus 237 -------------------------------------------------------RerGvTm~v~~~~fes~~~~~tliD 261 (603)
T KOG0458|consen 237 -------------------------------------------------------RERGVTMDVKTTWFESKSKIVTLID 261 (603)
T ss_pred -------------------------------------------------------hhcceeEEeeeEEEecCceeEEEec
Confidence 6899999999999999999999999
Q ss_pred CCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHH
Q psy15197 258 APGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTK 337 (902)
Q Consensus 258 TPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~ 337 (902)
+|||.+|+.+|+.++..||++|||||++.+.||.||+..+|+++|..+++.+|+..+||++||||+++|++++++++..+
T Consensus 262 aPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~Wsq~RF~eIk~~ 341 (603)
T KOG0458|consen 262 APGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSWSQDRFEEIKNK 341 (603)
T ss_pred CCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccCccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhh-hhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCcccHHHHHHhcCCCCCCCCCCceEEEeeEEeeCCCeE
Q psy15197 338 LGAFL-KQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNFKTPSRPLTKPLRMSVSDIYKSTGSGY 416 (902)
Q Consensus 338 l~~~l-~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L~~l~~p~~~~~~pl~~~I~~i~~v~g~G~ 416 (902)
+..+| +.+||...++.|||||+++|+|+....+...+..||+||+|++.|+.+..|.+..++||++.|.++++.++.|.
T Consensus 342 l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~~~~p~~~~~kPl~ltIsdi~~~~~~~~ 421 (603)
T KOG0458|consen 342 LSSFLKESCGFKESSVKFIPISGLSGENLIKIEQENELSQWYKGPTLLSQIDSFKIPERPIDKPLRLTISDIYPLPSSGV 421 (603)
T ss_pred HHHHHHHhcCcccCCcceEecccccCCcccccccchhhhhhhcCChHHHHHhhccCCCCcccCCeEEEhhheeecCCCee
Confidence 99999 89999988999999999999999987777789999999999999999998888899999999999999999999
Q ss_pred EEEEEEEeeEeeCCCEEEEccCCcEEEEEEEEEceEeeeeeccCCeEEEeeeccccccceeecccc-CCCCCCCCcccce
Q psy15197 417 CIAGRVETGVILAGEKVMVQPQNEVTTVKAVYVDEMSVSAAYAGDNVSVTLLNYDQQNVSVGFLLS-ELSHPCPVSSKFE 495 (902)
Q Consensus 417 V~~GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~~~~~v~~a~aGdiv~I~l~~~~~~~i~kG~vL~-~~~~~~~~~~~F~ 495 (902)
.++|+|++|.|.+|++|+++++.+.++|++|..++.+...|.|||.|.+.+..+....++.|++++ .+.-+...+..|.
T Consensus 422 ~i~gkiesG~iq~gqkl~i~~s~e~~~vk~l~~~~~~~~~a~AGD~Vsl~L~~i~~n~v~~g~i~~~~~~~~i~~~~~f~ 501 (603)
T KOG0458|consen 422 SISGKIESGYIQPGQKLYIMTSREDATVKGLTSNDEPKTWAVAGDNVSLKLPGILPNLVQVGDIADSGPQFPISKTTRFV 501 (603)
T ss_pred EEEEEEeccccccCCEEEEecCcceEEEEeeecCCCcceeEeeCCEEEEecCccChhhcccceeeecCCCccccceeEEE
Confidence 999999999999999999999999999999999999999999999999999988889999999999 6666777778899
Q ss_pred eeeeeecccCCcccccc
Q psy15197 496 ARIVVFNITTPITIGYP 512 (902)
Q Consensus 496 a~irvvHakg~ga~G~f 512 (902)
+++.++|-...+..|.-
T Consensus 502 ~~~~~f~~~~Pi~~g~~ 518 (603)
T KOG0458|consen 502 ARITTFDINLPITKGSP 518 (603)
T ss_pred EEEEEeeccccccCCcc
Confidence 99999999888888886
No 18
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=100.00 E-value=1.4e-53 Score=491.25 Aligned_cols=347 Identities=45% Similarity=0.769 Sum_probs=321.6
Q ss_pred CCCcceEEEEEecCCCChhHHHhHHHHhccccchhhhccchhhhhhcccccceeeeeccccCcccccCCccccCCCCCCC
Q psy15197 22 GGKGRLHLVVIGHVDAGKSTLMGHLLYLMGRVSAREIHKHETESKKLGKQSFMYAWILDETGEESSCEIPVDTTSAGNPV 101 (902)
Q Consensus 22 ~~~~~~~v~v~G~~~~GKstL~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 101 (902)
+.+.++||+++||+|||||||+++||+.+|.++++.+++.++++.+.|+++++|+|++|..++|
T Consensus 3 ~~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~E---------------- 66 (446)
T PTZ00141 3 KEKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAE---------------- 66 (446)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHH----------------
Confidence 4577899999999999999999999999999999999999999999999999999999988876
Q ss_pred CccccccccCCCCCCCCcchhhhhccccccCCCCccchhcccCCCCccccccchhhhccCCCCCCCCCcccccccccccc
Q psy15197 102 DSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFEDRETIIKTIGPHGPVPLEDTYYLDKLFHF 181 (902)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (902)
T Consensus 67 -------------------------------------------------------------------------------- 66 (446)
T PTZ00141 67 -------------------------------------------------------------------------------- 66 (446)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCcccccccCCCCccccceecccCCccchhhhhhhhhcccccccccccccCCeEEeeeEEEEEECCeEEEEEeCCCc
Q psy15197 182 SGERNPERVVHAKGGGAFGYFEVRKLPAGVVKIEFACLVMRIVPLEGIASALNRGITMDVGQSQFETKTKYITLLDAPGH 261 (902)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~e~~rGiTid~~~~~~~~~~~~i~lIDTPG~ 261 (902)
++||+|+++....++++++.++|||||||
T Consensus 67 ---------------------------------------------------r~rGiTid~~~~~~~~~~~~i~lIDtPGh 95 (446)
T PTZ00141 67 ---------------------------------------------------RERGITIDIALWKFETPKYYFTIIDAPGH 95 (446)
T ss_pred ---------------------------------------------------HhcCEeEEeeeEEEccCCeEEEEEECCCh
Confidence 67899999999999999999999999999
Q ss_pred cchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCC--CCCchHHHHHHHHHHHH
Q psy15197 262 KDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLD--TVSWSQDRFQEIVTKLG 339 (902)
Q Consensus 262 ~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiD--l~~~~~~~~~~i~~~l~ 339 (902)
.+|+.+++.++..+|++|||||++.|++|.+|+...|+++|+.++..+|++++||++|||| +++|++++++++.+++.
T Consensus 96 ~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~ 175 (446)
T PTZ00141 96 RDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNYSQERYDEIKKEVS 175 (446)
T ss_pred HHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccchhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999988888899999999999999999989999999 55678889999999999
Q ss_pred HhhhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCcccHHHHHHhcCCCCCCCCCCceEEEeeEEeeCCCeEEEE
Q psy15197 340 AFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNFKTPSRPLTKPLRMSVSDIYKSTGSGYCIA 419 (902)
Q Consensus 340 ~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L~~l~~p~~~~~~pl~~~I~~i~~v~g~G~V~~ 419 (902)
.+++..++...++|+|++||++|+|+.+.+. .++||+|++|+++|+.+.+|.+..++|++|+|+++|+++|.|+|++
T Consensus 176 ~~l~~~g~~~~~~~~ipiSa~~g~ni~~~~~---~~~Wy~G~tL~~~l~~~~~~~~~~~~p~r~~I~~v~~v~g~Gtvv~ 252 (446)
T PTZ00141 176 AYLKKVGYNPEKVPFIPISGWQGDNMIEKSD---NMPWYKGPTLLEALDTLEPPKRPVDKPLRLPLQDVYKIGGIGTVPV 252 (446)
T ss_pred HHHHhcCCCcccceEEEeecccCCCcccCCC---CCcccchHHHHHHHhCCCCCCcCCCCCeEEEEEEEEecCCceEEEE
Confidence 9999999876779999999999999987544 5899999999999999988877788999999999999999999999
Q ss_pred EEEEeeEeeCCCEEEEccCCcEEEEEEEEEceEeeeeeccCCeEEEeeeccccccceeeccccCCC-CCCCCcccceeee
Q psy15197 420 GRVETGVILAGEKVMVQPQNEVTTVKAVYVDEMSVSAAYAGDNVSVTLLNYDQQNVSVGFLLSELS-HPCPVSSKFEARI 498 (902)
Q Consensus 420 GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~~~~~v~~a~aGdiv~I~l~~~~~~~i~kG~vL~~~~-~~~~~~~~F~a~i 498 (902)
|+|.+|+|++||.|.+.|.+...+|++|++++.++++|.|||+|+|.+.+++..++++|++|++.. .++..+.+|+|+|
T Consensus 253 G~V~~G~l~~Gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~L~~i~~~~v~rG~vl~~~~~~p~~~~~~f~a~i 332 (446)
T PTZ00141 253 GRVETGILKPGMVVTFAPSGVTTEVKSVEMHHEQLAEAVPGDNVGFNVKNVSVKDIKRGYVASDSKNDPAKECADFTAQV 332 (446)
T ss_pred EEEEcceEecCCEEEEccCCcEEEEEEEEecCcccCEECCCCEEEEEECCCCHHHcCCceEEecCCCCCCccceEEEEEE
Confidence 999999999999999999999999999999999999999999999999988889999999999874 4556688999999
Q ss_pred eeecccCCcccccc-eecchh
Q psy15197 499 VVFNITTPITIGYP-VTHDIT 518 (902)
Q Consensus 499 rvvHakg~ga~G~f-v~~~is 518 (902)
.+++++..+..||. +.+..+
T Consensus 333 ~~l~~~~~i~~G~~~vl~~~t 353 (446)
T PTZ00141 333 IVLNHPGQIKNGYTPVLDCHT 353 (446)
T ss_pred EEECCCCccCCCCeEEEEEec
Confidence 99998888999997 655433
No 19
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=100.00 E-value=2.3e-51 Score=473.37 Aligned_cols=340 Identities=42% Similarity=0.748 Sum_probs=310.0
Q ss_pred CCCcceEEEEEecCCCChhHHHhHHHHhccccchhhhccchhhhhhcccccceeeeeccccCcccccCCccccCCCCCCC
Q psy15197 22 GGKGRLHLVVIGHVDAGKSTLMGHLLYLMGRVSAREIHKHETESKKLGKQSFMYAWILDETGEESSCEIPVDTTSAGNPV 101 (902)
Q Consensus 22 ~~~~~~~v~v~G~~~~GKstL~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 101 (902)
+.|..+||+++||+|||||||+++||+.+|.|+.+.+++.+++|++.|+.+|+++|++|..++|
T Consensus 2 ~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E---------------- 65 (425)
T PRK12317 2 KEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEE---------------- 65 (425)
T ss_pred CCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhH----------------
Confidence 4678899999999999999999999999999999999999999999999999999999888865
Q ss_pred CccccccccCCCCCCCCcchhhhhccccccCCCCccchhcccCCCCccccccchhhhccCCCCCCCCCcccccccccccc
Q psy15197 102 DSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFEDRETIIKTIGPHGPVPLEDTYYLDKLFHF 181 (902)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (902)
T Consensus 66 -------------------------------------------------------------------------------- 65 (425)
T PRK12317 66 -------------------------------------------------------------------------------- 65 (425)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCcccccccCCCCccccceecccCCccchhhhhhhhhcccccccccccccCCeEEeeeEEEEEECCeEEEEEeCCCc
Q psy15197 182 SGERNPERVVHAKGGGAFGYFEVRKLPAGVVKIEFACLVMRIVPLEGIASALNRGITMDVGQSQFETKTKYITLLDAPGH 261 (902)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~e~~rGiTid~~~~~~~~~~~~i~lIDTPG~ 261 (902)
+++|+|+|.....++++++.++|||||||
T Consensus 66 ---------------------------------------------------r~rG~T~d~~~~~~~~~~~~i~liDtpG~ 94 (425)
T PRK12317 66 ---------------------------------------------------RERGVTIDLAHKKFETDKYYFTIVDCPGH 94 (425)
T ss_pred ---------------------------------------------------hhcCccceeeeEEEecCCeEEEEEECCCc
Confidence 67999999999999999999999999999
Q ss_pred cchHHHHHHHHHHcCEEEEEEECCC--CccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHH
Q psy15197 262 KDFIPNMITGATQADVALLVVDATR--GEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLG 339 (902)
Q Consensus 262 ~df~~~~~~~l~~aD~aIlVVDa~~--g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~ 339 (902)
++|.+.+..++..+|++|||||+++ + ...++.+++.++...+++++||++||+|+++++.+++..+.+++.
T Consensus 95 ~~~~~~~~~~~~~aD~~ilVvDa~~~~~-------~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~i~ 167 (425)
T PRK12317 95 RDFVKNMITGASQADAAVLVVAADDAGG-------VMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEEVKEEVS 167 (425)
T ss_pred ccchhhHhhchhcCCEEEEEEEcccCCC-------CCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHHHHHHHH
Confidence 9999999999999999999999998 5 346888898888888887788999999998765666777788888
Q ss_pred HhhhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCcccHHHHHHhcCCCCCCCCCCceEEEeeEEeeCCCeEEEE
Q psy15197 340 AFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNFKTPSRPLTKPLRMSVSDIYKSTGSGYCIA 419 (902)
Q Consensus 340 ~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L~~l~~p~~~~~~pl~~~I~~i~~v~g~G~V~~ 419 (902)
.+++..++....++++++||++|.|+.+++. .++||.|++|+++|+.++++.+..++|++|+|+++|++++.|+|++
T Consensus 168 ~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~---~~~wy~g~~L~~~l~~~~~~~~~~~~p~r~~i~~~~~~~g~G~vv~ 244 (425)
T PRK12317 168 KLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE---NMPWYNGPTLLEALDNLKPPEKPTDKPLRIPIQDVYSISGVGTVPV 244 (425)
T ss_pred HHHHhhCCCcCcceEEEeecccCCCcccccc---CCCcccHHHHHHHHhcCCCCccccCCCcEEEEEEEEeeCCCeEEEE
Confidence 8888888765567899999999999998765 5899999999999999988877788999999999999999999999
Q ss_pred EEEEeeEeeCCCEEEEccCCcEEEEEEEEEceEeeeeeccCCeEEEeeeccccccceeeccccCCCCCCCCcccceeeee
Q psy15197 420 GRVETGVILAGEKVMVQPQNEVTTVKAVYVDEMSVSAAYAGDNVSVTLLNYDQQNVSVGFLLSELSHPCPVSSKFEARIV 499 (902)
Q Consensus 420 GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~~~~~v~~a~aGdiv~I~l~~~~~~~i~kG~vL~~~~~~~~~~~~F~a~ir 499 (902)
|+|.+|+|++||.|.++|.+...+|++|++++.++++|.|||.|+|.+.+++..++++|++|+++.+++..+.+|+|++.
T Consensus 245 G~v~~G~v~~Gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~l~~~~~~~i~rG~vl~~~~~~~~~~~~f~a~v~ 324 (425)
T PRK12317 245 GRVETGVLKVGDKVVFMPAGVVGEVKSIEMHHEELPQAEPGDNIGFNVRGVGKKDIKRGDVCGHPDNPPTVAEEFTAQIV 324 (425)
T ss_pred EEEeeccEecCCEEEECCCCCeEEEEEEEECCcccCEECCCCeEEEEECCCCHHHccCccEecCCCCCCCcccEEEEEEE
Confidence 99999999999999999999999999999999999999999999999998888899999999998777777899999999
Q ss_pred eecccCCcccccc-eecchh
Q psy15197 500 VFNITTPITIGYP-VTHDIT 518 (902)
Q Consensus 500 vvHakg~ga~G~f-v~~~is 518 (902)
+++++..+..||. +.+..+
T Consensus 325 ~l~~~~~i~~G~~~~~~~~t 344 (425)
T PRK12317 325 VLQHPSAITVGYTPVFHAHT 344 (425)
T ss_pred EECCCCcCCCCCeEEEEEcC
Confidence 9988888999997 545433
No 20
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=100.00 E-value=3.5e-50 Score=463.48 Aligned_cols=345 Identities=41% Similarity=0.713 Sum_probs=312.0
Q ss_pred CCCcceEEEEEecCCCChhHHHhHHHHhccccchhhhccchhhhhhcccccceeeeeccccCcccccCCccccCCCCCCC
Q psy15197 22 GGKGRLHLVVIGHVDAGKSTLMGHLLYLMGRVSAREIHKHETESKKLGKQSFMYAWILDETGEESSCEIPVDTTSAGNPV 101 (902)
Q Consensus 22 ~~~~~~~v~v~G~~~~GKstL~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 101 (902)
..+..+||+++||+|||||||+++|++.+|.++++...+.++++.+.|+++|+|+|++|..++|
T Consensus 3 ~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e---------------- 66 (426)
T TIGR00483 3 KEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEE---------------- 66 (426)
T ss_pred CCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHH----------------
Confidence 4577899999999999999999999999999999999999999999999999999999988865
Q ss_pred CccccccccCCCCCCCCcchhhhhccccccCCCCccchhcccCCCCccccccchhhhccCCCCCCCCCcccccccccccc
Q psy15197 102 DSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFEDRETIIKTIGPHGPVPLEDTYYLDKLFHF 181 (902)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (902)
T Consensus 67 -------------------------------------------------------------------------------- 66 (426)
T TIGR00483 67 -------------------------------------------------------------------------------- 66 (426)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCcccccccCCCCccccceecccCCccchhhhhhhhhcccccccccccccCCeEEeeeEEEEEECCeEEEEEeCCCc
Q psy15197 182 SGERNPERVVHAKGGGAFGYFEVRKLPAGVVKIEFACLVMRIVPLEGIASALNRGITMDVGQSQFETKTKYITLLDAPGH 261 (902)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~e~~rGiTid~~~~~~~~~~~~i~lIDTPG~ 261 (902)
+++|+|++.....+.++++.++|||||||
T Consensus 67 ---------------------------------------------------~~rg~Tid~~~~~~~~~~~~i~iiDtpGh 95 (426)
T TIGR00483 67 ---------------------------------------------------RERGVTIDVAHWKFETDKYEVTIVDCPGH 95 (426)
T ss_pred ---------------------------------------------------hhcCceEEEEEEEEccCCeEEEEEECCCH
Confidence 67899999999999999999999999999
Q ss_pred cchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHh
Q psy15197 262 KDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAF 341 (902)
Q Consensus 262 ~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~ 341 (902)
++|.+.+..++..+|++|||||++++.++ ...++.+++.++...+++++|||+||+|+++++++.++++.+++..+
T Consensus 96 ~~f~~~~~~~~~~aD~~ilVvDa~~~~~~----~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~ 171 (426)
T TIGR00483 96 RDFIKNMITGASQADAAVLVVAVGDGEFE----VQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFEAIKKEVSNL 171 (426)
T ss_pred HHHHHHHHhhhhhCCEEEEEEECCCCCcc----cCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHHHHHHHHHHH
Confidence 99999999999999999999999988432 34578888877877887888899999999876677777888888888
Q ss_pred hhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCcccHHHHHHhcCCCCCCCCCCceEEEeeEEeeCCCeEEEEEE
Q psy15197 342 LKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNFKTPSRPLTKPLRMSVSDIYKSTGSGYCIAGR 421 (902)
Q Consensus 342 l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L~~l~~p~~~~~~pl~~~I~~i~~v~g~G~V~~Gr 421 (902)
++..++....++++++||++|.|+.+.+. .++||+|++|+++|+.++++.+..++||+|+|+++|+++|.|+|++|+
T Consensus 172 ~~~~g~~~~~~~~i~iSA~~g~ni~~~~~---~~~w~~g~~l~~~l~~~~~~~~~~~~p~r~~i~~v~~~~g~G~vv~G~ 248 (426)
T TIGR00483 172 IKKVGYNPDTVPFIPISAWNGDNVIKKSE---NTPWYKGKTLLEALDALEPPEKPTDKPLRIPIQDVYSITGVGTVPVGR 248 (426)
T ss_pred HHHcCCCcccceEEEeecccccccccccc---CCccccchHHHHHHhcCCCCCCccCCCcEEEEEEEEecCCCeEEEEEE
Confidence 88888765667999999999999998665 478999999999999998887778899999999999999999999999
Q ss_pred EEeeEeeCCCEEEEccCCcEEEEEEEEEceEeeeeeccCCeEEEeeeccccccceeeccccCCCCCCCCcccceeeeeee
Q psy15197 422 VETGVILAGEKVMVQPQNEVTTVKAVYVDEMSVSAAYAGDNVSVTLLNYDQQNVSVGFLLSELSHPCPVSSKFEARIVVF 501 (902)
Q Consensus 422 V~sG~Lk~Gd~v~l~p~~~~~~V~sI~~~~~~v~~a~aGdiv~I~l~~~~~~~i~kG~vL~~~~~~~~~~~~F~a~irvv 501 (902)
|.+|+|++||.|.+.|.+...+|++|++++.++++|.|||+|+|.+.+++..++++|++|+++..++..+++|+|++.++
T Consensus 249 v~~G~i~~gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~l~~i~~~~i~rG~vl~~~~~~~~~~~~f~a~v~~l 328 (426)
T TIGR00483 249 VETGVLKPGDKVVFEPAGVSGEVKSIEMHHEQIEQAEPGDNIGFNVRGVSKKDIRRGDVCGHPDNPPKVAKEFTAQIVVL 328 (426)
T ss_pred EccceeecCCEEEECCCCcEEEEEEEEECCcccCEEcCCCEEEEEECCCChhhcccceEEecCCCCCceeeEEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999888899999999999877777788999999999
Q ss_pred cccCCcccccc-eecchhhh
Q psy15197 502 NITTPITIGYP-VTHDITHL 520 (902)
Q Consensus 502 Hakg~ga~G~f-v~~~is~~ 520 (902)
+++..+..||. +.|..+..
T Consensus 329 ~~~~~i~~g~~~~~~~~t~~ 348 (426)
T TIGR00483 329 QHPGAITVGYTPVFHCHTAQ 348 (426)
T ss_pred CCCCccCCCCeEEEEecCcE
Confidence 98888999998 65544443
No 21
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=100.00 E-value=6.4e-48 Score=441.02 Aligned_cols=330 Identities=32% Similarity=0.525 Sum_probs=294.1
Q ss_pred eEEEEEecCCCChhHHHhHHHHhccccchhhhccchhhhhhcccc--cceeeeeccccCcccccCCccccCCCCCCCCcc
Q psy15197 27 LHLVVIGHVDAGKSTLMGHLLYLMGRVSAREIHKHETESKKLGKQ--SFMYAWILDETGEESSCEIPVDTTSAGNPVDSE 104 (902)
Q Consensus 27 ~~v~v~G~~~~GKstL~~~ll~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 104 (902)
+||+|+||+|||||||+++||+.+|.++++.++|..++++..|+. ||.|+|++|..++|
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE------------------- 61 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAE------------------- 61 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHH-------------------
Confidence 589999999999999999999999999999999999999999985 79999999998876
Q ss_pred ccccccCCCCCCCCcchhhhhccccccCCCCccchhcccCCCCccccccchhhhccCCCCCCCCCcccccccccccccCC
Q psy15197 105 TIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFEDRETIIKTIGPHGPVPLEDTYYLDKLFHFSGE 184 (902)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (902)
T Consensus 62 -------------------------------------------------------------------------------- 61 (406)
T TIGR02034 62 -------------------------------------------------------------------------------- 61 (406)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccccCCCCccccceecccCCccchhhhhhhhhcccccccccccccCCeEEeeeEEEEEECCeEEEEEeCCCccch
Q psy15197 185 RNPERVVHAKGGGAFGYFEVRKLPAGVVKIEFACLVMRIVPLEGIASALNRGITMDVGQSQFETKTKYITLLDAPGHKDF 264 (902)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~e~~rGiTid~~~~~~~~~~~~i~lIDTPG~~df 264 (902)
++||+|++.....+++++++++|||||||++|
T Consensus 62 ------------------------------------------------~~rgiTid~~~~~~~~~~~~~~liDtPGh~~f 93 (406)
T TIGR02034 62 ------------------------------------------------REQGITIDVAYRYFSTDKRKFIVADTPGHEQY 93 (406)
T ss_pred ------------------------------------------------hcCCcCeEeeeEEEccCCeEEEEEeCCCHHHH
Confidence 67999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhh
Q psy15197 265 IPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQ 344 (902)
Q Consensus 265 ~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~ 344 (902)
.+.+..++..+|++|||||+..|+. .|+++++.++..++++++||++||||+++++.+.++++.+++..+++.
T Consensus 94 ~~~~~~~~~~aD~allVVda~~G~~-------~qt~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~ 166 (406)
T TIGR02034 94 TRNMATGASTADLAVLLVDARKGVL-------EQTRRHSYIASLLGIRHVVLAVNKMDLVDYDEEVFENIKKDYLAFAEQ 166 (406)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCc-------cccHHHHHHHHHcCCCcEEEEEEecccccchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999944 689999999999998888899999999876666777788888878877
Q ss_pred cCCCCCCceEecCCCccCCCCCCCCCCcccccccCcccHHHHHHhcCCCCCCCCCCceEEEeeEEeeCCCeEEEEEEEEe
Q psy15197 345 AGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNFKTPSRPLTKPLRMSVSDIYKSTGSGYCIAGRVET 424 (902)
Q Consensus 345 ~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L~~l~~p~~~~~~pl~~~I~~i~~v~g~G~V~~GrV~s 424 (902)
+++. +++++++||++|+|+.+++. .++||.|++|+++|+.++++.+..++|++|+|.++++....+..+.|+|.+
T Consensus 167 ~~~~--~~~iipiSA~~g~ni~~~~~---~~~wy~g~tL~~~L~~~~~~~~~~~~p~r~~i~~v~~~~~~~~g~~G~v~~ 241 (406)
T TIGR02034 167 LGFR--DVTFIPLSALKGDNVVSRSE---SMPWYSGPTLLEILETVEVERDAQDLPLRFPVQYVNRPNLDFRGYAGTIAS 241 (406)
T ss_pred cCCC--CccEEEeecccCCCCccccc---CCCccchhHHHHHHHhcCCCCCcCCCCcccceEEEeecCCCcEEEEEEEec
Confidence 7763 56899999999999998654 589999999999999998887777899999999998765444447899999
Q ss_pred eEeeCCCEEEEccCCcEEEEEEEEEceEeeeeeccCCeEEEeeeccccccceeeccccCCCCCCCCcccceeeeeeeccc
Q psy15197 425 GVILAGEKVMVQPQNEVTTVKAVYVDEMSVSAAYAGDNVSVTLLNYDQQNVSVGFLLSELSHPCPVSSKFEARIVVFNIT 504 (902)
Q Consensus 425 G~Lk~Gd~v~l~p~~~~~~V~sI~~~~~~v~~a~aGdiv~I~l~~~~~~~i~kG~vL~~~~~~~~~~~~F~a~irvvHak 504 (902)
|+|++||.|.+.|.+...+|++|++++.++++|.|||++++.+.. ..++++|++|+++..++..+..|++++.+++.
T Consensus 242 G~l~~gd~v~i~P~~~~~~VksI~~~~~~~~~a~~G~~v~l~l~~--~~~i~rG~vl~~~~~~~~~~~~f~a~i~~l~~- 318 (406)
T TIGR02034 242 GSVHVGDEVVVLPSGRSSRVARIVTFDGDLEQARAGQAVTLTLDD--EIDISRGDLLAAADSAPEVADQFAATLVWMAE- 318 (406)
T ss_pred ceeecCCEEEEeCCCcEEEEEEEEECCcccCEeCCCCEEEEEECC--ccccCCccEEEcCCCCCCcceEEEEEEEEeCh-
Confidence 999999999999999999999999999999999999999999973 47799999999998877778899999998885
Q ss_pred CCcccccc-eecchh
Q psy15197 505 TPITIGYP-VTHDIT 518 (902)
Q Consensus 505 g~ga~G~f-v~~~is 518 (902)
..+..||. ..|..+
T Consensus 319 ~~i~~g~~~~l~~gt 333 (406)
T TIGR02034 319 EPLLPGRSYDLKLGT 333 (406)
T ss_pred hhcCCCCEEEEEeCC
Confidence 57889997 544333
No 22
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=100.00 E-value=1.3e-47 Score=444.97 Aligned_cols=343 Identities=30% Similarity=0.493 Sum_probs=298.3
Q ss_pred HHHHHHhcCCCcceEEEEEecCCCChhHHHhHHHHhccccchhhhccchhhhhhcccc--cceeeeeccccCcccccCCc
Q psy15197 14 EEYTREQAGGKGRLHLVVIGHVDAGKSTLMGHLLYLMGRVSAREIHKHETESKKLGKQ--SFMYAWILDETGEESSCEIP 91 (902)
Q Consensus 14 ~~~~~~~~~~~~~~~v~v~G~~~~GKstL~~~ll~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~e~~~~~~ 91 (902)
|.++... ..++.+||+||||+|||||||+++||+.+|.|+++.+++.++++...|+. +|.|+|++|..++|
T Consensus 16 ~~~~~~~-~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eE------ 88 (474)
T PRK05124 16 EAYLHAQ-QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAE------ 88 (474)
T ss_pred HHHHhhc-cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHH------
Confidence 4443333 35788999999999999999999999999999999999999999999984 89999999888876
Q ss_pred cccCCCCCCCCccccccccCCCCCCCCcchhhhhccccccCCCCccchhcccCCCCccccccchhhhccCCCCCCCCCcc
Q psy15197 92 VDTTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFEDRETIIKTIGPHGPVPLED 171 (902)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (902)
T Consensus 89 -------------------------------------------------------------------------------- 88 (474)
T PRK05124 89 -------------------------------------------------------------------------------- 88 (474)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccCCCCcccccccCCCCccccceecccCCccchhhhhhhhhcccccccccccccCCeEEeeeEEEEEECCe
Q psy15197 172 TYYLDKLFHFSGERNPERVVHAKGGGAFGYFEVRKLPAGVVKIEFACLVMRIVPLEGIASALNRGITMDVGQSQFETKTK 251 (902)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~e~~rGiTid~~~~~~~~~~~ 251 (902)
++||+|+++....++++++
T Consensus 89 -------------------------------------------------------------r~rgiTid~~~~~~~~~~~ 107 (474)
T PRK05124 89 -------------------------------------------------------------REQGITIDVAYRYFSTEKR 107 (474)
T ss_pred -------------------------------------------------------------hhcCCCeEeeEEEeccCCc
Confidence 6789999999999999999
Q ss_pred EEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHHHH
Q psy15197 252 YITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRF 331 (902)
Q Consensus 252 ~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~~ 331 (902)
+++|||||||.+|...+..++..+|++|||||+..|+. .|+++++.++..++++++||++||||+++++.+.+
T Consensus 108 ~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~-------~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~~~~~ 180 (474)
T PRK05124 108 KFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVL-------DQTRRHSFIATLLGIKHLVVAVNKMDLVDYSEEVF 180 (474)
T ss_pred EEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcc-------ccchHHHHHHHHhCCCceEEEEEeeccccchhHHH
Confidence 99999999999999999999999999999999999844 58999999999999888889999999987666677
Q ss_pred HHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCcccHHHHHHhcCCCCCCCCCCceEEEeeEEee
Q psy15197 332 QEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNFKTPSRPLTKPLRMSVSDIYKS 411 (902)
Q Consensus 332 ~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L~~l~~p~~~~~~pl~~~I~~i~~v 411 (902)
.++.+++..+++.+++. ..++++++||++|.|+.++.. .++||.|++|+++|+.++++.+..++|++|+|+++++.
T Consensus 181 ~~i~~~l~~~~~~~~~~-~~~~iipvSA~~g~ni~~~~~---~~~wy~G~tLl~~L~~i~~~~~~~~~p~r~~I~~v~~~ 256 (474)
T PRK05124 181 ERIREDYLTFAEQLPGN-LDIRFVPLSALEGDNVVSQSE---SMPWYSGPTLLEVLETVDIQRVVDAQPFRFPVQYVNRP 256 (474)
T ss_pred HHHHHHHHHHHHhcCCC-CCceEEEEEeecCCCcccccc---cccccchhhHHHHHhhcCCCCCCCCCCceeeEEEEEec
Confidence 88888887777766632 356899999999999998554 57999999999999999887777789999999999875
Q ss_pred CCCeEEEEEEEEeeEeeCCCEEEEccCCcEEEEEEEEEceEeeeeeccCCeEEEeeeccccccceeeccccCCCCCCCCc
Q psy15197 412 TGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYVDEMSVSAAYAGDNVSVTLLNYDQQNVSVGFLLSELSHPCPVS 491 (902)
Q Consensus 412 ~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~~~~~v~~a~aGdiv~I~l~~~~~~~i~kG~vL~~~~~~~~~~ 491 (902)
......+.|+|.+|+|++||.|.++|.+...+|++|++++.++++|.|||.|+|.+.. ..++++|++|+++..++..+
T Consensus 257 ~~~~~g~~G~V~sG~l~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aG~~V~l~L~~--~~~i~rG~VL~~~~~~~~~~ 334 (474)
T PRK05124 257 NLDFRGYAGTLASGVVKVGDRVKVLPSGKESNVARIVTFDGDLEEAFAGEAITLVLED--EIDISRGDLLVAADEALQAV 334 (474)
T ss_pred CCcccceEEEEEeEEEecCCEEEEecCCceEEEEEEEEcCccccCcCCCCEEEEEeCC--ccccCCccEEECCCCCCccc
Confidence 4432336799999999999999999999999999999999999999999999999974 57799999999987777778
Q ss_pred ccceeeeeeecccCCcccccc-eecchh
Q psy15197 492 SKFEARIVVFNITTPITIGYP-VTHDIT 518 (902)
Q Consensus 492 ~~F~a~irvvHakg~ga~G~f-v~~~is 518 (902)
..|++++.+++ +..+..||- ..+..+
T Consensus 335 ~~f~a~i~~l~-~~~i~~G~~~~l~~gt 361 (474)
T PRK05124 335 QHASADVVWMA-EQPLQPGQSYDIKIAG 361 (474)
T ss_pred eEEEEEEEEeC-CcccCCCCeEEEEeCC
Confidence 89999999998 567889987 544433
No 23
>KOG0459|consensus
Probab=100.00 E-value=3.2e-47 Score=408.86 Aligned_cols=358 Identities=42% Similarity=0.768 Sum_probs=331.2
Q ss_pred CCcceEEEEEecCCCChhHHHhHHHHhccccchhhhccchhhhhhcccccceeeeeccccCcccccCCccccCCCCCCCC
Q psy15197 23 GKGRLHLVVIGHVDAGKSTLMGHLLYLMGRVSAREIHKHETESKKLGKQSFMYAWILDETGEESSCEIPVDTTSAGNPVD 102 (902)
Q Consensus 23 ~~~~~~v~v~G~~~~GKstL~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 102 (902)
.++.+|++++||+|+||||+.+.|++.+|.+++|+++|++.++++.++.|++++|.||+..+|
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~Ee----------------- 138 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEE----------------- 138 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhh-----------------
Confidence 478999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccccccccCCCCCCCCcchhhhhccccccCCCCccchhcccCCCCccccccchhhhccCCCCCCCCCccccccccccccc
Q psy15197 103 SETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFEDRETIIKTIGPHGPVPLEDTYYLDKLFHFS 182 (902)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (902)
T Consensus 139 -------------------------------------------------------------------------------- 138 (501)
T KOG0459|consen 139 -------------------------------------------------------------------------------- 138 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccccccCCCCccccceecccCCccchhhhhhhhhcccccccccccccCCeEEeeeEEEEEECCeEEEEEeCCCcc
Q psy15197 183 GERNPERVVHAKGGGAFGYFEVRKLPAGVVKIEFACLVMRIVPLEGIASALNRGITMDVGQSQFETKTKYITLLDAPGHK 262 (902)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~e~~rGiTid~~~~~~~~~~~~i~lIDTPG~~ 262 (902)
|++|-|+.....+|+...+.++++|+|||.
T Consensus 139 --------------------------------------------------R~kgKtvEvGrA~FEte~~~ftiLDApGHk 168 (501)
T KOG0459|consen 139 --------------------------------------------------RDKGKTVEVGRAYFETENKRFTILDAPGHK 168 (501)
T ss_pred --------------------------------------------------hhccceeeeeeEEEEecceeEEeeccCccc
Confidence 567888999999999999999999999999
Q ss_pred chHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCC--CCchHHHHHHHHHHHHH
Q psy15197 263 DFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDT--VSWSQDRFQEIVTKLGA 340 (902)
Q Consensus 263 df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl--~~~~~~~~~~i~~~l~~ 340 (902)
.|..+|+.++.+||+++||+.+..|.+|.+|+.+.|+++|..+++.++++++|+++||||- ++|+.++++++.+++..
T Consensus 169 ~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs~eRy~E~~~k~~~ 248 (501)
T KOG0459|consen 169 SFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLQP 248 (501)
T ss_pred ccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcchhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999996 46999999999999999
Q ss_pred hhhhcCCCC-CCceEecCCCccCCCCCCCCCCcccccccCcccHHHHHHhcCCCCCCCCCCceEEEeeEEeeCCCeEEEE
Q psy15197 341 FLKQAGFRD-SDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNFKTPSRPLTKPLRMSVSDIYKSTGSGYCIA 419 (902)
Q Consensus 341 ~l~~~~~~~-~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L~~l~~p~~~~~~pl~~~I~~i~~v~g~G~V~~ 419 (902)
+|+.+|+++ ....++++|+++|.++.+... ..+.||.|+++++.|+.++...+..++|++++|.+-|+ ..|+|+.
T Consensus 249 fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~--s~cpwy~gp~fl~~ld~l~~~~R~~~GP~~~pI~~Kyk--dmGTvv~ 324 (501)
T KOG0459|consen 249 FLRKLGFNPKPDKHFVPVSGLTGANVKDRTD--SVCPWYKGPIFLEYLDELPHLERILNGPIRCPVANKYK--DMGTVVG 324 (501)
T ss_pred HHHHhcccCCCCceeeecccccccchhhccc--ccCCcccCCccceehhccCcccccCCCCEEeehhhhcc--ccceEEE
Confidence 999999875 345689999999999988543 57999999999999999888889999999999999887 4569999
Q ss_pred EEEEeeEeeCCCEEEEccCCcEEEEEEEEEceEeeeeeccCCeEEEeeeccccccceeeccccCCCCCCCCcccceeeee
Q psy15197 420 GRVETGVILAGEKVMVQPQNEVTTVKAVYVDEMSVSAAYAGDNVSVTLLNYDQQNVSVGFLLSELSHPCPVSSKFEARIV 499 (902)
Q Consensus 420 GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~~~~~v~~a~aGdiv~I~l~~~~~~~i~kG~vL~~~~~~~~~~~~F~a~ir 499 (902)
|+|+||.|+.|+++.++|.+..+.|.+|+.+..+++.+.+||.+-|.++++...++..|.+||++.+++++...|.|+|.
T Consensus 325 GKvEsGsi~kg~~lvvMPnk~~veV~~I~~ddvE~~~~~pGenvk~rlkgieeedi~~GfiL~~~~n~~~s~~~F~aqi~ 404 (501)
T KOG0459|consen 325 GKVESGSIKKGQQLVVMPNKTNVEVLGIYSDDVETDRVAPGENVKLRLKGIEEEDISPGFILCSPNNPCKSGRTFDAQIV 404 (501)
T ss_pred EEecccceecCCeEEEccCCcceEEEEEecccceeeeccCCcceEEEecccchhhccCceEEecCCCccccccEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccCCcccccc-eec--chhhhhhhheecccCc
Q psy15197 500 VFNITTPITIGYP-VTH--DITHLTKAAIFSEIGK 531 (902)
Q Consensus 500 vvHakg~ga~G~f-v~~--~is~~~~A~if~~~gk 531 (902)
++.++..++.||- |.| .+-..+..+++..+++
T Consensus 405 IlE~~sIi~~GY~~VlHIht~ieEv~i~li~~idk 439 (501)
T KOG0459|consen 405 ILEHKSIICAGYSCVLHIHTAVEEVEIKLIHLIDK 439 (501)
T ss_pred EEecCceeccCcceEeeeeeehhheeeeeeeeecc
Confidence 9999999999998 765 4444555566655554
No 24
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=100.00 E-value=5.6e-45 Score=438.69 Aligned_cols=343 Identities=32% Similarity=0.548 Sum_probs=298.8
Q ss_pred HHHHHHHhcCCCcceEEEEEecCCCChhHHHhHHHHhccccchhhhccchhhhhhccc--ccceeeeeccccCcccccCC
Q psy15197 13 IEEYTREQAGGKGRLHLVVIGHVDAGKSTLMGHLLYLMGRVSAREIHKHETESKKLGK--QSFMYAWILDETGEESSCEI 90 (902)
Q Consensus 13 ~~~~~~~~~~~~~~~~v~v~G~~~~GKstL~~~ll~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~e~~~~~ 90 (902)
++.+... ...++.+||+||||+|||||||+|+||+.+|.|+.+.+++.+.++...|+ ++|.++|++|..++|
T Consensus 12 ~~~~~~~-~~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E----- 85 (632)
T PRK05506 12 ILAYLAQ-HERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAE----- 85 (632)
T ss_pred HHHHHhh-ccCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHH-----
Confidence 3444443 34677899999999999999999999999999999999999999999998 899999999888865
Q ss_pred ccccCCCCCCCCccccccccCCCCCCCCcchhhhhccccccCCCCccchhcccCCCCccccccchhhhccCCCCCCCCCc
Q psy15197 91 PVDTTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFEDRETIIKTIGPHGPVPLE 170 (902)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (902)
T Consensus 86 -------------------------------------------------------------------------------- 85 (632)
T PRK05506 86 -------------------------------------------------------------------------------- 85 (632)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccCCCCcccccccCCCCccccceecccCCccchhhhhhhhhcccccccccccccCCeEEeeeEEEEEECC
Q psy15197 171 DTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEVRKLPAGVVKIEFACLVMRIVPLEGIASALNRGITMDVGQSQFETKT 250 (902)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~e~~rGiTid~~~~~~~~~~ 250 (902)
++||+|++.....+++++
T Consensus 86 --------------------------------------------------------------~~rg~Tid~~~~~~~~~~ 103 (632)
T PRK05506 86 --------------------------------------------------------------REQGITIDVAYRYFATPK 103 (632)
T ss_pred --------------------------------------------------------------HhCCcCceeeeeEEccCC
Confidence 678999999999999999
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHHH
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDR 330 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~ 330 (902)
.+++|||||||++|.+.+..++..+|++|||||+..|.. .++++++.++..++++++||++||+|+++++++.
T Consensus 104 ~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~-------~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~~ 176 (632)
T PRK05506 104 RKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVL-------TQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQEV 176 (632)
T ss_pred ceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcc-------ccCHHHHHHHHHhCCCeEEEEEEecccccchhHH
Confidence 999999999999999999999999999999999999843 6899999999989988888999999998766677
Q ss_pred HHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCcccHHHHHHhcCCCCCCCCCCceEEEeeEEe
Q psy15197 331 FQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNFKTPSRPLTKPLRMSVSDIYK 410 (902)
Q Consensus 331 ~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L~~l~~p~~~~~~pl~~~I~~i~~ 410 (902)
++++..++..+++.+++ ..++++++||++|.|+.+... .++||.|++|+++|+.++++.+..++|++|+|.++++
T Consensus 177 ~~~i~~~i~~~~~~~~~--~~~~iipiSA~~g~ni~~~~~---~~~wy~g~tL~~~l~~~~~~~~~~~~p~r~~i~~v~~ 251 (632)
T PRK05506 177 FDEIVADYRAFAAKLGL--HDVTFIPISALKGDNVVTRSA---RMPWYEGPSLLEHLETVEIASDRNLKDFRFPVQYVNR 251 (632)
T ss_pred HHHHHHHHHHHHHHcCC--CCccEEEEecccCCCcccccc---CCCcccHhHHHHHHhcCCCCCCcCCCCceeeEEEEEe
Confidence 77888888888877777 346899999999999997554 4799999999999999987777778999999999987
Q ss_pred eCCCeEEEEEEEEeeEeeCCCEEEEccCCcEEEEEEEEEceEeeeeeccCCeEEEeeeccccccceeeccccCCCCCCCC
Q psy15197 411 STGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYVDEMSVSAAYAGDNVSVTLLNYDQQNVSVGFLLSELSHPCPV 490 (902)
Q Consensus 411 v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~~~~~v~~a~aGdiv~I~l~~~~~~~i~kG~vL~~~~~~~~~ 490 (902)
....+..+.|+|.+|+|++||.|.+.|.+...+|++|++++.++++|.|||.|+|.+.. ..++++|++|+++.++++.
T Consensus 252 ~~~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~l~~--~~~i~rG~vL~~~~~~~~~ 329 (632)
T PRK05506 252 PNLDFRGFAGTVASGVVRPGDEVVVLPSGKTSRVKRIVTPDGDLDEAFAGQAVTLTLAD--EIDISRGDMLARADNRPEV 329 (632)
T ss_pred cCCCceEEEEEEecceeecCCEEEEcCCCceEEEEEEEECCceeCEEcCCCeEEEEecC--ccccCCccEEecCCCCCcc
Confidence 54322336799999999999999999999999999999999999999999999999973 4679999999999877777
Q ss_pred cccceeeeeeecccCCcccccc-eecchh
Q psy15197 491 SSKFEARIVVFNITTPITIGYP-VTHDIT 518 (902)
Q Consensus 491 ~~~F~a~irvvHakg~ga~G~f-v~~~is 518 (902)
+..|++++.+++... +..||. +.|..+
T Consensus 330 ~~~f~a~i~~l~~~~-~~~g~~~~l~~gt 357 (632)
T PRK05506 330 ADQFDATVVWMAEEP-LLPGRPYLLKHGT 357 (632)
T ss_pred eeEEEEEEEEecccc-cCCCCeEEEEeCC
Confidence 889999999998654 558987 544333
No 25
>PRK12735 elongation factor Tu; Reviewed
Probab=100.00 E-value=9.6e-44 Score=405.63 Aligned_cols=273 Identities=32% Similarity=0.496 Sum_probs=235.3
Q ss_pred cccCCeEEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCC
Q psy15197 232 ALNRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGV 311 (902)
Q Consensus 232 e~~rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i 311 (902)
|+++|+|++.....+++++.+++|||||||++|+..+..++..+|++|||||+.+++ ..++.+++.++...++
T Consensus 56 E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~-------~~qt~e~l~~~~~~gi 128 (396)
T PRK12735 56 EKARGITINTSHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGP-------MPQTREHILLARQVGV 128 (396)
T ss_pred HHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCC-------chhHHHHHHHHHHcCC
Confidence 488999999999999999999999999999999999999999999999999999884 3689999999999998
Q ss_pred CeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCc-ccHHHHHHhc
Q psy15197 312 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSG-PCLLDVIDNF 390 (902)
Q Consensus 312 ~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g-~~Lle~L~~l 390 (902)
+.+|+++||+|+++ +++.++.+.+++..+++.+++...+++++++||++|.|... .+.||.+ +.|++.|.++
T Consensus 129 ~~iivvvNK~Dl~~-~~~~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~------~~~w~~~~~~Ll~~l~~~ 201 (396)
T PRK12735 129 PYIVVFLNKCDMVD-DEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDD------DEEWEAKILELMDAVDSY 201 (396)
T ss_pred CeEEEEEEecCCcc-hHHHHHHHHHHHHHHHHHcCCCcCceeEEecchhccccCCC------CCcccccHHHHHHHHHhc
Confidence 87777899999975 23445566667888888888765668999999999998643 4689865 7899999875
Q ss_pred -CCCCCCCCCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCC--cEEEEEEEEEceEeeeeeccCCeEEEee
Q psy15197 391 -KTPSRPLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQN--EVTTVKAVYVDEMSVSAAYAGDNVSVTL 467 (902)
Q Consensus 391 -~~p~~~~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~--~~~~V~sI~~~~~~v~~a~aGdiv~I~l 467 (902)
++|.+..++||+|+|+++|+++|.|+|++|+|.+|+|++||.|.+.|.+ ...+|++|++++.++++|.|||+++|.+
T Consensus 202 ~~~p~~~~~~p~r~~I~~~f~v~g~Gtvv~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~~~~~v~~a~aGd~v~l~L 281 (396)
T PRK12735 202 IPEPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIVKVGDEVEIVGIKETQKTTVTGVEMFRKLLDEGQAGDNVGVLL 281 (396)
T ss_pred CCCCCccCCCCeEEEEEEEEecCCceEEEEEEEEecEEeCCCEEEEecCCCCeEEEEEEEEECCeEeCEECCCCEEEEEe
Confidence 4566677899999999999999999999999999999999999999863 5789999999999999999999999999
Q ss_pred eccccccceeeccccCCCCCCCCcccceeeeeeecc-----cCCcccccc-eecchhh
Q psy15197 468 LNYDQQNVSVGFLLSELSHPCPVSSKFEARIVVFNI-----TTPITIGYP-VTHDITH 519 (902)
Q Consensus 468 ~~~~~~~i~kG~vL~~~~~~~~~~~~F~a~irvvHa-----kg~ga~G~f-v~~~is~ 519 (902)
.+++.+++++|++|+++.. +.....|+|++.++++ +..+.+||. +.|..+.
T Consensus 282 ~~i~~~~i~rG~vl~~~~~-~~~~~~f~a~i~vl~~~~~~~~~~i~~g~~~~l~~~t~ 338 (396)
T PRK12735 282 RGTKREDVERGQVLAKPGS-IKPHTKFEAEVYVLSKEEGGRHTPFFNGYRPQFYFRTT 338 (396)
T ss_pred CCCcHHHCCcceEEEcCCC-CCcceEEEEEEEEEecccCCCCCcccCCCeeEEEeccc
Confidence 9888899999999999764 3457899999999886 356788997 5554343
No 26
>PRK00049 elongation factor Tu; Reviewed
Probab=100.00 E-value=1.4e-43 Score=404.12 Aligned_cols=273 Identities=33% Similarity=0.494 Sum_probs=236.7
Q ss_pred cccCCeEEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCC
Q psy15197 232 ALNRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGV 311 (902)
Q Consensus 232 e~~rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i 311 (902)
|++||+|++.....+++++++++|+|||||.+|...+..++..+|++++|||+..|. ..++++++.++...++
T Consensus 56 E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~-------~~qt~~~~~~~~~~g~ 128 (396)
T PRK00049 56 EKARGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGP-------MPQTREHILLARQVGV 128 (396)
T ss_pred HHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCC-------chHHHHHHHHHHHcCC
Confidence 489999999999999889999999999999999999999999999999999999883 4699999999999998
Q ss_pred CeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCc-ccHHHHHHh-
Q psy15197 312 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSG-PCLLDVIDN- 389 (902)
Q Consensus 312 ~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g-~~Lle~L~~- 389 (902)
|.+||++||+|+++ +++.++.+.+++..+++.+++...++|++++||++|.+.. ..++||.+ ++|+++|.+
T Consensus 129 p~iiVvvNK~D~~~-~~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~------~~~~w~~~~~~ll~~l~~~ 201 (396)
T PRK00049 129 PYIVVFLNKCDMVD-DEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGD------DDEEWEKKILELMDAVDSY 201 (396)
T ss_pred CEEEEEEeecCCcc-hHHHHHHHHHHHHHHHHhcCCCccCCcEEEeecccccCCC------CcccccccHHHHHHHHHhc
Confidence 87767999999985 3344566667888889888886667899999999987632 25789975 789999987
Q ss_pred cCCCCCCCCCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccC--CcEEEEEEEEEceEeeeeeccCCeEEEee
Q psy15197 390 FKTPSRPLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQ--NEVTTVKAVYVDEMSVSAAYAGDNVSVTL 467 (902)
Q Consensus 390 l~~p~~~~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~--~~~~~V~sI~~~~~~v~~a~aGdiv~I~l 467 (902)
+++|.+..++||+|+|+++|+++|+|+|++|+|.+|+|++||.|.+.|. +...+|++|++++.++++|.+||++++.+
T Consensus 202 ~~~p~~~~~~p~r~~I~~~f~v~g~G~Vv~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~~~~~~~~a~~Gd~v~l~l 281 (396)
T PRK00049 202 IPTPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIRDTQKTTVTGVEMFRKLLDEGQAGDNVGALL 281 (396)
T ss_pred CCCCCCCCCCCeEEEEEEEEeeCCceEEEEEEEeeeEEecCCEEEEeecCCCceEEEEEEEECCcEeCEEcCCCEEEEEe
Confidence 4556677789999999999999999999999999999999999999876 57789999999999999999999999999
Q ss_pred eccccccceeeccccCCCCCCCCcccceeeeeeecc-----cCCcccccc-eecchhh
Q psy15197 468 LNYDQQNVSVGFLLSELSHPCPVSSKFEARIVVFNI-----TTPITIGYP-VTHDITH 519 (902)
Q Consensus 468 ~~~~~~~i~kG~vL~~~~~~~~~~~~F~a~irvvHa-----kg~ga~G~f-v~~~is~ 519 (902)
.++..+++++|++|+++.. +..+..|+|++.++++ +..+..||. +.|..+.
T Consensus 282 ~~i~~~~i~~G~vl~~~~~-~~~~~~f~a~i~vl~~~~~g~~~~i~~g~~~~~~~~t~ 338 (396)
T PRK00049 282 RGIKREDVERGQVLAKPGS-ITPHTKFEAEVYVLSKEEGGRHTPFFNGYRPQFYFRTT 338 (396)
T ss_pred CCCCHHHCCcceEEecCCC-CCcceEEEEEEEEEecCcCCCCCcccCCCEEEEEEecC
Confidence 9888899999999999764 3456899999999987 467889998 6554343
No 27
>PRK12736 elongation factor Tu; Reviewed
Probab=100.00 E-value=1.6e-43 Score=403.54 Aligned_cols=270 Identities=34% Similarity=0.504 Sum_probs=231.3
Q ss_pred cccCCeEEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCC
Q psy15197 232 ALNRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGV 311 (902)
Q Consensus 232 e~~rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i 311 (902)
|++||+|++.....++++++.++|||||||++|+..+..++..+|++|||||+++|+ ..++++++.++..+++
T Consensus 56 E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~-------~~~t~~~~~~~~~~g~ 128 (394)
T PRK12736 56 EKERGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGP-------MPQTREHILLARQVGV 128 (394)
T ss_pred HHhcCccEEEEeeEecCCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCC-------chhHHHHHHHHHHcCC
Confidence 388999999999999888999999999999999999999999999999999999984 4799999999999999
Q ss_pred CeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCc-ccHHHHHHhc
Q psy15197 312 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSG-PCLLDVIDNF 390 (902)
Q Consensus 312 ~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g-~~Lle~L~~l 390 (902)
+.+||++||+|+++ +++.++.+.+++..+++..++....+|++++||++|.+.. ..||.+ ..|++.|.+.
T Consensus 129 ~~~IvviNK~D~~~-~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~--------~~~~~~i~~Ll~~l~~~ 199 (394)
T PRK12736 129 PYLVVFLNKVDLVD-DEELLELVEMEVRELLSEYDFPGDDIPVIRGSALKALEGD--------PKWEDAIMELMDAVDEY 199 (394)
T ss_pred CEEEEEEEecCCcc-hHHHHHHHHHHHHHHHHHhCCCcCCccEEEeeccccccCC--------CcchhhHHHHHHHHHHh
Confidence 88889999999974 2334455666888888888886667899999999985321 368754 6788888764
Q ss_pred -CCCCCCCCCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccC--CcEEEEEEEEEceEeeeeeccCCeEEEee
Q psy15197 391 -KTPSRPLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQ--NEVTTVKAVYVDEMSVSAAYAGDNVSVTL 467 (902)
Q Consensus 391 -~~p~~~~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~--~~~~~V~sI~~~~~~v~~a~aGdiv~I~l 467 (902)
++|.+..++||+|+|+++|++++.|+|++|+|.+|+|++||.|++.|. +...+|++|++++.++++|.|||+++|.+
T Consensus 200 lp~~~~~~~~p~r~~I~~~~~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~~~~~~V~sI~~~~~~~~~a~aGd~v~l~l 279 (394)
T PRK12736 200 IPTPERDTDKPFLMPVEDVFTITGRGTVVTGRVERGTVKVGDEVEIVGIKETQKTVVTGVEMFRKLLDEGQAGDNVGVLL 279 (394)
T ss_pred CCCCCCCCCCCeEEEEEEEEecCCcEEEEEEEEeecEEecCCEEEEecCCCCeEEEEEEEEECCEEccEECCCCEEEEEE
Confidence 556667789999999999999999999999999999999999999887 55789999999999999999999999999
Q ss_pred eccccccceeeccccCCCCCCCCcccceeeeeeecc-----cCCcccccc-eecchh
Q psy15197 468 LNYDQQNVSVGFLLSELSHPCPVSSKFEARIVVFNI-----TTPITIGYP-VTHDIT 518 (902)
Q Consensus 468 ~~~~~~~i~kG~vL~~~~~~~~~~~~F~a~irvvHa-----kg~ga~G~f-v~~~is 518 (902)
.+++.+++++|++|+++..+ ...+.|+|++.++++ +..+.+||. +.+..+
T Consensus 280 ~~i~~~~i~~G~vl~~~~~~-~~~~~f~a~i~vl~~~~~~~~~~i~~g~~~~l~~~t 335 (394)
T PRK12736 280 RGVDRDEVERGQVLAKPGSI-KPHTKFKAEVYILTKEEGGRHTPFFNNYRPQFYFRT 335 (394)
T ss_pred CCCcHHhCCcceEEecCCCC-CcceEEEEEEEEEecccCCCCCcccCCceEEEEEcc
Confidence 98888899999999987643 456899999999886 356788998 555433
No 28
>PLN03126 Elongation factor Tu; Provisional
Probab=100.00 E-value=1.9e-43 Score=408.63 Aligned_cols=279 Identities=30% Similarity=0.467 Sum_probs=238.9
Q ss_pred ccccCCeEEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhC
Q psy15197 231 SALNRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLG 310 (902)
Q Consensus 231 ~e~~rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~ 310 (902)
+|+++|+|++.....++++++.++|||||||++|++++..++..+|++|||||+.+| ...|+++++.++..++
T Consensus 124 ~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G-------~~~qt~e~~~~~~~~g 196 (478)
T PLN03126 124 EERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADG-------PMPQTKEHILLAKQVG 196 (478)
T ss_pred hHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCC-------CcHHHHHHHHHHHHcC
Confidence 348999999999999999999999999999999999999999999999999999998 4479999999999999
Q ss_pred CCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCCC--CcccccccC-cccHHHHH
Q psy15197 311 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQ--VPALTSWYS-GPCLLDVI 387 (902)
Q Consensus 311 i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~--~~~~~~w~~-g~~Lle~L 387 (902)
++.+||++||||+++ .++.++.+.+++..+++.+++...++|++++||++|.++..... .....+||. .++|++.|
T Consensus 197 i~~iIvvvNK~Dl~~-~~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l 275 (478)
T PLN03126 197 VPNMVVFLNKQDQVD-DEELLELVELEVRELLSSYEFPGDDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAV 275 (478)
T ss_pred CCeEEEEEecccccC-HHHHHHHHHHHHHHHHHhcCCCcCcceEEEEEccccccccccccccccCCCchhhhHHHHHHHH
Confidence 988889999999986 23446667778999999988876789999999999987642111 111248997 46788888
Q ss_pred HhcC-CCCCCCCCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCC--cEEEEEEEEEceEeeeeeccCCeEE
Q psy15197 388 DNFK-TPSRPLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQN--EVTTVKAVYVDEMSVSAAYAGDNVS 464 (902)
Q Consensus 388 ~~l~-~p~~~~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~--~~~~V~sI~~~~~~v~~a~aGdiv~ 464 (902)
+++. .|.+..++|++|+|+++|+++|+|+|+.|+|.+|.|++||.|.+.|.+ ...+|++|++++.++++|.|||.++
T Consensus 276 ~~~~~~p~r~~~~p~r~~I~~vf~v~g~GtVv~G~V~sG~i~~Gd~v~i~p~~~~~~~~VksI~~~~~~v~~A~aG~~v~ 355 (478)
T PLN03126 276 DSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTVKVGETVDIVGLRETRSTTVTGVEMFQKILDEALAGDNVG 355 (478)
T ss_pred HHhCCCCCCccccceeeEEEEEEEeCCceEEEEEEEEcCeEecCCEEEEecCCCceEEEEEEEEECCeECCEEeCCceee
Confidence 8754 466677899999999999999999999999999999999999999875 4689999999999999999999999
Q ss_pred EeeeccccccceeeccccCCCCCCCCcccceeeeeeeccc-----CCcccccc-eecchh
Q psy15197 465 VTLLNYDQQNVSVGFLLSELSHPCPVSSKFEARIVVFNIT-----TPITIGYP-VTHDIT 518 (902)
Q Consensus 465 I~l~~~~~~~i~kG~vL~~~~~~~~~~~~F~a~irvvHak-----g~ga~G~f-v~~~is 518 (902)
|.+.+++..++++|++|+++.. +..+..|+|++.+++++ ..+..||. +.|..+
T Consensus 356 l~L~~i~~~di~rG~VL~~~~~-~~~~~~F~A~i~vL~~~~gg~~~~I~~G~~~~lhigt 414 (478)
T PLN03126 356 LLLRGIQKADIQRGMVLAKPGS-ITPHTKFEAIVYVLKKEEGGRHSPFFAGYRPQFYMRT 414 (478)
T ss_pred eeccCCcHHHcCCccEEecCCC-CCceEEEEEEEEEecccccCCcccccCCcEEEEEEEe
Confidence 9999888899999999998865 34578999999999875 46788987 544333
No 29
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-44 Score=382.54 Aligned_cols=273 Identities=32% Similarity=0.579 Sum_probs=248.3
Q ss_pred cchhhhhhhhhcccccccccccccCCeEEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccc
Q psy15197 211 VVKIEFACLVMRIVPLEGIASALNRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFE 290 (902)
Q Consensus 211 ~~~~~~~~~~~d~~~~~~~~~e~~rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E 290 (902)
..++|++.++ +++++||+.|||||+.+.+|....+++++.|||||+.|.++|..+.+.||++|++|||..|+.
T Consensus 52 g~~~D~ALLv------DGL~AEREQGITIDVAYRyFsT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl- 124 (431)
T COG2895 52 GEKIDLALLV------DGLEAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVL- 124 (431)
T ss_pred CCccchhhhh------hhhHHHHhcCceEEEEeeecccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhH-
Confidence 4456777776 688889999999999999999999999999999999999999999999999999999999955
Q ss_pred cccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCCC
Q psy15197 291 TGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQ 370 (902)
Q Consensus 291 ~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~ 370 (902)
.|+++|..++..+|++++|+++|||||++++++.++++.+++..+.+++++.. ..+||+||+.|+|+...+.
T Consensus 125 ------~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~~I~~dy~~fa~~L~~~~--~~~IPiSAl~GDNV~~~s~ 196 (431)
T COG2895 125 ------EQTRRHSFIASLLGIRHVVVAVNKMDLVDYSEEVFEAIVADYLAFAAQLGLKD--VRFIPISALLGDNVVSKSE 196 (431)
T ss_pred ------HHhHHHHHHHHHhCCcEEEEEEeeecccccCHHHHHHHHHHHHHHHHHcCCCc--ceEEechhccCCccccccc
Confidence 59999999999999999999999999999999999999999999999998853 4789999999999998654
Q ss_pred CcccccccCcccHHHHHHhcCCCCCCCCCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCcEEEEEEEEEc
Q psy15197 371 VPALTSWYSGPCLLDVIDNFKTPSRPLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYVD 450 (902)
Q Consensus 371 ~~~~~~w~~g~~Lle~L~~l~~p~~~~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~~ 450 (902)
.|+||+||+|++.|+.+........++|||+|+.+.+..-.-+-..|+|.+|++++||.|.+.|++...+|++|...
T Consensus 197 ---~mpWY~GptLLe~LE~v~i~~~~~~~~~RfPVQ~V~Rp~~dfRGyaGtiasG~v~~Gd~vvvlPsG~~s~V~~Ivt~ 273 (431)
T COG2895 197 ---NMPWYKGPTLLEILETVEIADDRSAKAFRFPVQYVNRPNLDFRGYAGTIASGSVKVGDEVVVLPSGKTSRVKRIVTF 273 (431)
T ss_pred ---CCCcccCccHHHHHhhccccccccccceeeceEEecCCCCcccccceeeeccceecCCeEEEccCCCeeeEEEEecc
Confidence 79999999999999999877777778999999999986644556789999999999999999999999999999998
Q ss_pred eEeeeeeccCCeEEEeeeccccccceeeccccCCCCCCCCcccceeeeeeecc
Q psy15197 451 EMSVSAAYAGDNVSVTLLNYDQQNVSVGFLLSELSHPCPVSSKFEARIVVFNI 503 (902)
Q Consensus 451 ~~~v~~a~aGdiv~I~l~~~~~~~i~kG~vL~~~~~~~~~~~~F~a~irvvHa 503 (902)
.-.+++|.+|+-|.+.+. .+-++++|++|+....++.....|.|.+.++..
T Consensus 274 dg~~~~A~aG~aVtl~L~--deidisRGd~i~~~~~~~~~~~~f~A~vvWm~~ 324 (431)
T COG2895 274 DGELAQASAGEAVTLVLA--DEIDISRGDLIVAADAPPAVADAFDADVVWMDE 324 (431)
T ss_pred CCchhhccCCceEEEEEc--ceeecccCcEEEccCCCcchhhhcceeEEEecC
Confidence 889999999999999885 557899999999998888888899999988764
No 30
>CHL00071 tufA elongation factor Tu
Probab=100.00 E-value=2.6e-43 Score=403.71 Aligned_cols=277 Identities=31% Similarity=0.499 Sum_probs=238.1
Q ss_pred ccccCCeEEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhC
Q psy15197 231 SALNRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLG 310 (902)
Q Consensus 231 ~e~~rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~ 310 (902)
+|++||+|++.....+++++.+++|+|||||.+|++.+..++..+|++++|||+.+|+ ..|+++++.++..++
T Consensus 55 ~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~-------~~qt~~~~~~~~~~g 127 (409)
T CHL00071 55 EEKARGITINTAHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGP-------MPQTKEHILLAKQVG 127 (409)
T ss_pred hhhcCCEeEEccEEEEccCCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCC-------cHHHHHHHHHHHHcC
Confidence 3489999999999999999999999999999999999999999999999999999984 469999999999999
Q ss_pred CCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCCCC--cccccccCc-ccHHHHH
Q psy15197 311 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQV--PALTSWYSG-PCLLDVI 387 (902)
Q Consensus 311 i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~--~~~~~w~~g-~~Lle~L 387 (902)
+|.+|+++||||+++. .+.++.+.+++..+++..++..+.+|++++||++|.++.+.... ....+||.+ ++|++.|
T Consensus 128 ~~~iIvvvNK~D~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l 206 (409)
T CHL00071 128 VPNIVVFLNKEDQVDD-EELLELVELEVRELLSKYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAV 206 (409)
T ss_pred CCEEEEEEEccCCCCH-HHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHH
Confidence 9878899999999863 33456667788899998888666789999999999988653321 113589975 8899999
Q ss_pred Hhc-CCCCCCCCCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccC--CcEEEEEEEEEceEeeeeeccCCeEE
Q psy15197 388 DNF-KTPSRPLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQ--NEVTTVKAVYVDEMSVSAAYAGDNVS 464 (902)
Q Consensus 388 ~~l-~~p~~~~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~--~~~~~V~sI~~~~~~v~~a~aGdiv~ 464 (902)
..+ ++|.+..++||+|+|+++|++++.|+|++|+|.+|+|++||.|.+.|. +...+|++|++++.++++|.|||+|+
T Consensus 207 ~~~~~~p~~~~~~p~r~~I~~v~~~~g~G~Vv~G~V~sG~l~~Gd~v~i~p~~~~~~~~VksI~~~~~~v~~a~aGd~v~ 286 (409)
T CHL00071 207 DSYIPTPERDTDKPFLMAIEDVFSITGRGTVATGRIERGTVKVGDTVEIVGLRETKTTTVTGLEMFQKTLDEGLAGDNVG 286 (409)
T ss_pred HhhCCCCCCCCCCCEEEEEEEEEEeCCCeEEEEEEEecCEEeeCCEEEEeeCCCCcEEEEEEEEEcCcCCCEECCCceeE
Confidence 875 456667789999999999999999999999999999999999998763 45789999999999999999999999
Q ss_pred EeeeccccccceeeccccCCCCCCCCcccceeeeeeecc-----cCCcccccc-eecc
Q psy15197 465 VTLLNYDQQNVSVGFLLSELSHPCPVSSKFEARIVVFNI-----TTPITIGYP-VTHD 516 (902)
Q Consensus 465 I~l~~~~~~~i~kG~vL~~~~~~~~~~~~F~a~irvvHa-----kg~ga~G~f-v~~~ 516 (902)
|.+.+++.+++++|++|+++.. +..+.+|+|++.++++ ...+..||. +.+.
T Consensus 287 i~l~~i~~~~i~~G~vl~~~~~-~~~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~ 343 (409)
T CHL00071 287 ILLRGIQKEDIERGMVLAKPGT-ITPHTKFEAQVYILTKEEGGRHTPFFPGYRPQFYV 343 (409)
T ss_pred EEEcCCCHHHcCCeEEEecCCC-CCcceEEEEEEEEEecccCCccccccCCceEEEEE
Confidence 9998888889999999998864 4557899999999887 356788997 5443
No 31
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=8.3e-43 Score=398.05 Aligned_cols=268 Identities=33% Similarity=0.513 Sum_probs=229.1
Q ss_pred cccCCeEEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCC
Q psy15197 232 ALNRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGV 311 (902)
Q Consensus 232 e~~rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i 311 (902)
|++||+|++.....++++++.++|||||||++|...+..++..+|++|||||+.+|+ ..++.+++.++..+++
T Consensus 56 E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~-------~~qt~e~l~~~~~~gi 128 (394)
T TIGR00485 56 EKARGITINTAHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGP-------MPQTREHILLARQVGV 128 (394)
T ss_pred HHhcCcceeeEEEEEcCCCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCC-------cHHHHHHHHHHHHcCC
Confidence 388999999999999888999999999999999999999999999999999999984 4699999999999999
Q ss_pred CeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCc-ccHHHHHHhc
Q psy15197 312 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSG-PCLLDVIDNF 390 (902)
Q Consensus 312 ~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g-~~Lle~L~~l 390 (902)
+++|+++||||+++. .+..+.+.+++..+++..++...++|++++||++|.+.. ..||.+ ++|++.|..+
T Consensus 129 ~~iIvvvNK~Dl~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~g~--------~~~~~~~~~ll~~l~~~ 199 (394)
T TIGR00485 129 PYIVVFLNKCDMVDD-EELLELVEMEVRELLSEYDFPGDDTPIIRGSALKALEGD--------AEWEAKILELMDAVDEY 199 (394)
T ss_pred CEEEEEEEecccCCH-HHHHHHHHHHHHHHHHhcCCCccCccEEECccccccccC--------CchhHhHHHHHHHHHhc
Confidence 988789999999852 234455666788888888876666899999999986422 368864 6788888875
Q ss_pred -CCCCCCCCCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccC--CcEEEEEEEEEceEeeeeeccCCeEEEee
Q psy15197 391 -KTPSRPLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQ--NEVTTVKAVYVDEMSVSAAYAGDNVSVTL 467 (902)
Q Consensus 391 -~~p~~~~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~--~~~~~V~sI~~~~~~v~~a~aGdiv~I~l 467 (902)
++|.+..++||+|+|+++|+++|.|+|++|+|.+|+|++||.|.+.|. +...+|++|++++.++++|.|||+++|.+
T Consensus 200 ~~~~~~~~~~p~r~~V~~vf~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~~~~~~VksI~~~~~~~~~a~aGd~v~l~l 279 (394)
T TIGR00485 200 IPTPERETDKPFLMPIEDVFSITGRGTVVTGRVERGIVKVGEEVEIVGLKDTRKTTVTGVEMFRKELDEGRAGDNVGLLL 279 (394)
T ss_pred CCCCCCCCCCCeEEEEEEEEeeCCceEEEEEEEEeeEEeCCCEEEEecCCCCcEEEEEEEEECCeEEEEECCCCEEEEEe
Confidence 456667789999999999999999999999999999999999999884 56789999999999999999999999999
Q ss_pred eccccccceeeccccCCCCCCCCcccceeeeeeecc-----cCCcccccc-eecc
Q psy15197 468 LNYDQQNVSVGFLLSELSHPCPVSSKFEARIVVFNI-----TTPITIGYP-VTHD 516 (902)
Q Consensus 468 ~~~~~~~i~kG~vL~~~~~~~~~~~~F~a~irvvHa-----kg~ga~G~f-v~~~ 516 (902)
.+++.+++++|++|+++.. +..+..|+|++.++++ +..+.+||. +.+.
T Consensus 280 ~~i~~~~i~rG~vl~~~~~-~~~~~~f~a~i~vl~~~~g~~~~~i~~g~~~~l~~ 333 (394)
T TIGR00485 280 RGIKREEIERGMVLAKPGS-IKPHTKFEAEVYVLKKEEGGRHTPFFSGYRPQFYF 333 (394)
T ss_pred CCccHHHCCccEEEecCCC-CCcceEEEEEEEEEecCCCCCCCccccCceEEEEE
Confidence 8888889999999998754 3456899999999876 356778887 4443
No 32
>PLN03127 Elongation factor Tu; Provisional
Probab=100.00 E-value=6.7e-42 Score=393.90 Aligned_cols=272 Identities=33% Similarity=0.454 Sum_probs=229.8
Q ss_pred ccccCCeEEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhC
Q psy15197 231 SALNRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLG 310 (902)
Q Consensus 231 ~e~~rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~ 310 (902)
+|++||+|++.....+++++++++|||||||++|+..+..++..+|+++||||+.+|+ ..|+++++.++..++
T Consensus 104 ~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~-------~~qt~e~l~~~~~~g 176 (447)
T PLN03127 104 EEKARGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGP-------MPQTKEHILLARQVG 176 (447)
T ss_pred hHhhcCceeeeeEEEEcCCCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCC-------chhHHHHHHHHHHcC
Confidence 3489999999999999999999999999999999999999999999999999999984 469999999999999
Q ss_pred CCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccC---CCCCCCCCCcccccccCcccHHHHH
Q psy15197 311 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTG---ENLTTPSQVPALTSWYSGPCLLDVI 387 (902)
Q Consensus 311 i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G---~gI~~~~~~~~~~~w~~g~~Lle~L 387 (902)
++.+|+++||||+++. ++.++.+.+++..+++.+++....+|++++||+++ .|+. ..|..++.|++.|
T Consensus 177 ip~iIvviNKiDlv~~-~~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~--------~~~~~i~~Ll~~l 247 (447)
T PLN03127 177 VPSLVVFLNKVDVVDD-EELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDE--------IGKNAILKLMDAV 247 (447)
T ss_pred CCeEEEEEEeeccCCH-HHHHHHHHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcc--------cccchHHHHHHHH
Confidence 9877789999999852 33445555577788887777666789999998754 3322 2345566788888
Q ss_pred Hhc-CCCCCCCCCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccC----CcEEEEEEEEEceEeeeeeccCCe
Q psy15197 388 DNF-KTPSRPLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQ----NEVTTVKAVYVDEMSVSAAYAGDN 462 (902)
Q Consensus 388 ~~l-~~p~~~~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~----~~~~~V~sI~~~~~~v~~a~aGdi 462 (902)
.++ ++|.+..++||+|+|+++|+++|+|+|++|+|.+|.|++||.|.+.|. +...+|++|++++..+++|.|||+
T Consensus 248 ~~~lp~p~r~~~~pfr~~I~~vf~v~g~GtVvtG~v~~G~i~~Gd~v~i~p~~~~g~~~~~VksI~~~~~~v~~a~aGd~ 327 (447)
T PLN03127 248 DEYIPEPVRVLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEIVGLRPGGPLKTTVTGVEMFKKILDQGQAGDN 327 (447)
T ss_pred HHhCCCCCcccccceEeeEEEEEEcCCceEEEEEEEEccEEecCCEEEEcccCCCCcEEEEEEEEEEECcEeCEEcCCCE
Confidence 875 456667789999999999999999999999999999999999998864 347899999999999999999999
Q ss_pred EEEeeeccccccceeeccccCCCCCCCCcccceeeeeeeccc-----CCcccccc-eecchhh
Q psy15197 463 VSVTLLNYDQQNVSVGFLLSELSHPCPVSSKFEARIVVFNIT-----TPITIGYP-VTHDITH 519 (902)
Q Consensus 463 v~I~l~~~~~~~i~kG~vL~~~~~~~~~~~~F~a~irvvHak-----g~ga~G~f-v~~~is~ 519 (902)
++|.+.+++..++++|++|+++.. +..+.+|+|++.+++++ ..+.+||. +.|..+.
T Consensus 328 v~l~L~~i~~~~i~rG~Vl~~~~~-~~~~~~F~A~i~vl~~~~gg~~~~i~~g~~~~~~~~t~ 389 (447)
T PLN03127 328 VGLLLRGLKREDVQRGQVICKPGS-IKTYKKFEAEIYVLTKDEGGRHTPFFSNYRPQFYLRTA 389 (447)
T ss_pred EEEEeCCCCHHHCCCccEEecCCC-CceeEEEEEEEEEEcccccccCcccccCceeEEEeeec
Confidence 999999988899999999999753 56688999999999873 56788987 5444333
No 33
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-40 Score=346.21 Aligned_cols=266 Identities=33% Similarity=0.511 Sum_probs=231.2
Q ss_pred cccccccCCeEEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHH
Q psy15197 228 GIASALNRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVR 307 (902)
Q Consensus 228 ~~~~e~~rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~ 307 (902)
..++|++|||||......++..++.+-.+|+|||.||+++|+.+..+.|++||||.|++|++ +||++|+.+.+
T Consensus 52 ~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpm-------PqTrEHiLlar 124 (394)
T COG0050 52 NAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPM-------PQTREHILLAR 124 (394)
T ss_pred cCchHhhcCceeccceeEEecCCceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCC-------Ccchhhhhhhh
Confidence 34557999999999999999999999999999999999999999999999999999999976 79999999999
Q ss_pred HhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCc-ccHHHH
Q psy15197 308 SLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSG-PCLLDV 386 (902)
Q Consensus 308 ~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g-~~Lle~ 386 (902)
+.|+|.+|+++||+|+++ +.+.++.+.-++..+|..+++...+.|++..||+.-..=. ..|... .-|+++
T Consensus 125 qvGvp~ivvflnK~Dmvd-d~ellelVemEvreLLs~y~f~gd~~Pii~gSal~ale~~--------~~~~~~i~eLm~a 195 (394)
T COG0050 125 QVGVPYIVVFLNKVDMVD-DEELLELVEMEVRELLSEYGFPGDDTPIIRGSALKALEGD--------AKWEAKIEELMDA 195 (394)
T ss_pred hcCCcEEEEEEecccccC-cHHHHHHHHHHHHHHHHHcCCCCCCcceeechhhhhhcCC--------cchHHHHHHHHHH
Confidence 999999999999999996 4566666677999999999999899999999987532211 124321 126677
Q ss_pred HHh-cCCCCCCCCCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCC--cEEEEEEEEEceEeeeeeccCCeE
Q psy15197 387 IDN-FKTPSRPLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQN--EVTTVKAVYVDEMSVSAAYAGDNV 463 (902)
Q Consensus 387 L~~-l~~p~~~~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~--~~~~V~sI~~~~~~v~~a~aGdiv 463 (902)
+++ ++.|.+..++||+|+|.++|++.+.|+|++|||..|+|++|+.+.+...+ .+..|..|+++++.++++.|||++
T Consensus 196 vd~yip~Per~~dkPflmpvEdvfsIsgrgtvvtGrVeRG~lkvg~eveivG~~~~~kttvtgvemfrk~ld~~~AGdnv 275 (394)
T COG0050 196 VDSYIPTPERDIDKPFLMPVEDVFSISGRGTVVTGRVERGILKVGEEVEIVGIKETQKTTVTGVEMFRKLLDEGQAGDNV 275 (394)
T ss_pred HHhcCCCCCCcccccccccceeeEEEcCceeEEEEEEeeeeeccCCEEEEecccccceeEEEhHHHHHHHHhccccCCCc
Confidence 765 57788889999999999999999999999999999999999999987655 357888999999999999999999
Q ss_pred EEeeeccccccceeeccccCCCCCCCCcccceeeeeeecccCCcccc
Q psy15197 464 SVTLLNYDQQNVSVGFLLSELSHPCPVSSKFEARIVVFNITTPITIG 510 (902)
Q Consensus 464 ~I~l~~~~~~~i~kG~vL~~~~~~~~~~~~F~a~irvvHakg~ga~G 510 (902)
++.+.+..++++.+|++|+++... .....|++.+.++...-.+.+-
T Consensus 276 g~llRg~~r~~veRGqvLakpgsi-~ph~kfeaevyvL~keeggrht 321 (394)
T COG0050 276 GVLLRGVKREDVERGQVLAKPGSI-KPHTKFEAEVYVLSKEEGGRHT 321 (394)
T ss_pred ceEEEeccccceecceEeecCCcc-cccceeeEEEEEEecccCCCCC
Confidence 999999999999999999998764 3467899999999887666543
No 34
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=100.00 E-value=2.4e-39 Score=372.04 Aligned_cols=252 Identities=21% Similarity=0.327 Sum_probs=209.6
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHH
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQD 329 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~ 329 (902)
.+.++|||||||++|++++..++..+|++|||||+.++. ...|+.+++.++..++++++|||+||+|+++ .+
T Consensus 116 ~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~------~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~--~~ 187 (460)
T PTZ00327 116 KRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESC------PQPQTSEHLAAVEIMKLKHIIILQNKIDLVK--EA 187 (460)
T ss_pred cceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCc------cchhhHHHHHHHHHcCCCcEEEEEecccccC--HH
Confidence 457999999999999999999999999999999999852 2368999999999999998989999999985 34
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCcccHHHHHH-hcCCCCCCCCCCceEEEeeE
Q psy15197 330 RFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVID-NFKTPSRPLTKPLRMSVSDI 408 (902)
Q Consensus 330 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L~-~l~~p~~~~~~pl~~~I~~i 408 (902)
...+..+++..+++... ...++++++||++|.||+. |++.|. .+++|.+..+.|++|+|+++
T Consensus 188 ~~~~~~~ei~~~l~~~~--~~~~~iipVSA~~G~nI~~---------------Ll~~L~~~lp~~~r~~~~p~r~~Idr~ 250 (460)
T PTZ00327 188 QAQDQYEEIRNFVKGTI--ADNAPIIPISAQLKYNIDV---------------VLEYICTQIPIPKRDLTSPPRMIVIRS 250 (460)
T ss_pred HHHHHHHHHHHHHHhhc--cCCCeEEEeeCCCCCCHHH---------------HHHHHHhhCCCCCCCCCCCcEEEEEEE
Confidence 45555566666665432 2456999999999999988 999998 67777677789999999999
Q ss_pred EeeCC--------CeEEEEEEEEeeEeeCCCEEEEccCC-------------cEEEEEEEEEceEeeeeeccCCeEEEee
Q psy15197 409 YKSTG--------SGYCIAGRVETGVILAGEKVMVQPQN-------------EVTTVKAVYVDEMSVSAAYAGDNVSVTL 467 (902)
Q Consensus 409 ~~v~g--------~G~V~~GrV~sG~Lk~Gd~v~l~p~~-------------~~~~V~sI~~~~~~v~~a~aGdiv~I~l 467 (902)
|.+.+ +|+|++|+|.+|+|++||.|.+.|.+ ...+|++|++++.++++|.|||+++|.+
T Consensus 251 F~V~~~g~~~~~~~GtVv~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~VksI~~~~~~v~~a~aG~~vai~l 330 (460)
T PTZ00327 251 FDVNKPGEDIENLKGGVAGGSILQGVLKVGDEIEIRPGIISKDSGGEFTCRPIRTRIVSLFAENNELQYAVPGGLIGVGT 330 (460)
T ss_pred EeecccCCcccCCceEEEEEEEeeceEecCCEEEEccCcccccccCccccccceEEEEEEEECCeECCEEcCCCEEEEEe
Confidence 98764 79999999999999999999999975 3579999999999999999999999997
Q ss_pred e---ccccccceeeccccCCCCCCCCcccceeeeeeeccc--------------CCcccccc-eecchhhhhhhhee
Q psy15197 468 L---NYDQQNVSVGFLLSELSHPCPVSSKFEARIVVFNIT--------------TPITIGYP-VTHDITHLTKAAIF 526 (902)
Q Consensus 468 ~---~~~~~~i~kG~vL~~~~~~~~~~~~F~a~irvvHak--------------g~ga~G~f-v~~~is~~~~A~if 526 (902)
. ++...++.+|++|+++...++....|++++.++++. ..+..||. ..+..+..+.+.+.
T Consensus 331 ~ld~~v~~~dv~rG~Vl~~~~~~~~~~~~~~a~v~~L~~~~~~~~~~~~~~~~~~~l~~g~~~~l~~gt~~~~~~i~ 407 (460)
T PTZ00327 331 TIDPTLTRADRLVGQVLGYPGKLPEVYAEIEIQYYLLRRLLGVKSQDGKKATKVAKLKKGESLMINIGSTTTGGRVV 407 (460)
T ss_pred ccCCCcchhhcccccEEEcCCCCCceeEEEEEEEEEecccccccccccccccCCcccCCCCEEEEEecccEEEEEEE
Confidence 6 567788999999999877777677999999888652 56888988 55554544444443
No 35
>KOG0460|consensus
Probab=100.00 E-value=1.9e-40 Score=349.89 Aligned_cols=269 Identities=32% Similarity=0.490 Sum_probs=229.9
Q ss_pred ccccccCCeEEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHH
Q psy15197 229 IASALNRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRS 308 (902)
Q Consensus 229 ~~~e~~rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~ 308 (902)
-++|+.|||||......++...+.+--+|||||.||+++|+.+..+-|++||||.|++|.+ +||++|+.++++
T Consensus 95 APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~M-------PQTrEHlLLArQ 167 (449)
T KOG0460|consen 95 APEEKARGITINAAHVEYETAKRHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGPM-------PQTREHLLLARQ 167 (449)
T ss_pred ChhhhhccceEeeeeeeeeccccccccCCCCchHHHHHHhhcCccccCceEEEEEcCCCCC-------cchHHHHHHHHH
Confidence 3456999999999999999999999999999999999999999999999999999999977 699999999999
Q ss_pred hCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCC-CCCCCCCCcccccccCcccHHHHH
Q psy15197 309 LGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGE-NLTTPSQVPALTSWYSGPCLLDVI 387 (902)
Q Consensus 309 ~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~-gI~~~~~~~~~~~w~~g~~Lle~L 387 (902)
.|++.++|++||.|+++ +++.++-+.-+++++|..+||++.++|+|..||+.-. | .++.. .. ..-..|++++
T Consensus 168 VGV~~ivvfiNKvD~V~-d~e~leLVEmE~RElLse~gf~Gd~~PvI~GSAL~ALeg-~~pei---g~--~aI~kLldav 240 (449)
T KOG0460|consen 168 VGVKHIVVFINKVDLVD-DPEMLELVEMEIRELLSEFGFDGDNTPVIRGSALCALEG-RQPEI---GL--EAIEKLLDAV 240 (449)
T ss_pred cCCceEEEEEecccccC-CHHHHHHHHHHHHHHHHHcCCCCCCCCeeecchhhhhcC-CCccc---cH--HHHHHHHHHH
Confidence 99999999999999995 2444444444889999999999999999999988531 2 11100 00 0001277778
Q ss_pred Hh-cCCCCCCCCCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCc--EEEEEEEEEceEeeeeeccCCeEE
Q psy15197 388 DN-FKTPSRPLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNE--VTTVKAVYVDEMSVSAAYAGDNVS 464 (902)
Q Consensus 388 ~~-l~~p~~~~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~--~~~V~sI~~~~~~v~~a~aGdiv~ 464 (902)
++ ++.|.+..++||.++|.++|.++|+|+|++|+|++|+||.|+.+.+...++ ...|+.|+++++.+++|.|||.++
T Consensus 241 Dsyip~P~R~~~~pFl~pie~vfsI~GRGTVvtGrlERG~lKkG~e~eivG~~~~lkttvtgiemF~K~ld~a~AGDn~G 320 (449)
T KOG0460|consen 241 DSYIPTPERDLDKPFLLPIEDVFSIPGRGTVVTGRLERGVLKKGDEVEIVGHNKTLKTTVTGIEMFRKSLDEAQAGDNLG 320 (449)
T ss_pred hccCCCcccccCCCceeehhheeeecCCceEEEEEEeecccccCCEEEEeccCcceeeEeehHHHHHHHHHhccccccee
Confidence 76 788889999999999999999999999999999999999999999987665 577889999999999999999999
Q ss_pred EeeeccccccceeeccccCCCCCCCCcccceeeeeeecccCCcccccc
Q psy15197 465 VTLLNYDQQNVSVGFLLSELSHPCPVSSKFEARIVVFNITTPITIGYP 512 (902)
Q Consensus 465 I~l~~~~~~~i~kG~vL~~~~~~~~~~~~F~a~irvvHakg~ga~G~f 512 (902)
+.+.++..+++++||+++++.+ ......|++.+.++....+|++--|
T Consensus 321 ~LlRGik~~dvkRGmvl~~pGs-vk~~~k~ea~~YiLsk~EGGR~~pf 367 (449)
T KOG0460|consen 321 ALLRGIKREDVKRGMVLAKPGS-VKPHNKFEAQLYILSKEEGGRHKPF 367 (449)
T ss_pred hhhhcCCHHHHhcccEEecCCc-ccccceeeEEEEEEEhhhCCCccch
Confidence 9999999999999999999987 5567899999999886555554433
No 36
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=100.00 E-value=1.4e-36 Score=347.81 Aligned_cols=252 Identities=25% Similarity=0.389 Sum_probs=204.2
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHH
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQD 329 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~ 329 (902)
++.++|||||||++|...+..++..+|++|||||++++.. ..++.+++..+..++++++||++||+|+++. +
T Consensus 79 ~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~------~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~--~ 150 (406)
T TIGR03680 79 LRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCP------QPQTKEHLMALEIIGIKNIVIVQNKIDLVSK--E 150 (406)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCcc------ccchHHHHHHHHHcCCCeEEEEEEccccCCH--H
Confidence 4689999999999999999999999999999999998731 3588999988888888888899999999852 2
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCcccHHHHHHh-cCCCCCCCCCCceEEEeeE
Q psy15197 330 RFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDN-FKTPSRPLTKPLRMSVSDI 408 (902)
Q Consensus 330 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L~~-l~~p~~~~~~pl~~~I~~i 408 (902)
...+..+++..+++... ...++++++||++|+|+++ |++.|.. ++++.+..++|++|+|+++
T Consensus 151 ~~~~~~~~i~~~l~~~~--~~~~~ii~vSA~~g~gi~~---------------L~e~L~~~l~~~~~~~~~~~~~~I~~~ 213 (406)
T TIGR03680 151 KALENYEEIKEFVKGTV--AENAPIIPVSALHNANIDA---------------LLEAIEKFIPTPERDLDKPPLMYVARS 213 (406)
T ss_pred HHHHHHHHHHhhhhhcc--cCCCeEEEEECCCCCChHH---------------HHHHHHHhCCCCCCCCCCCcEEEEEEE
Confidence 22333344444444321 1346899999999999998 8888887 5666666789999999999
Q ss_pred EeeCC--------CeEEEEEEEEeeEeeCCCEEEEccCCc------------EEEEEEEEEceEeeeeeccCCeEEEeee
Q psy15197 409 YKSTG--------SGYCIAGRVETGVILAGEKVMVQPQNE------------VTTVKAVYVDEMSVSAAYAGDNVSVTLL 468 (902)
Q Consensus 409 ~~v~g--------~G~V~~GrV~sG~Lk~Gd~v~l~p~~~------------~~~V~sI~~~~~~v~~a~aGdiv~I~l~ 468 (902)
|.+.+ +|+|+.|+|.+|+|++||.|.+.|.+. ..+|++|++++.++++|.|||.++|.+.
T Consensus 214 f~v~~~g~~~~~~~G~Vv~G~v~~G~i~~gd~v~i~P~~~~~~~g~~~~~~~~~~V~sI~~~~~~~~~a~~G~~v~i~l~ 293 (406)
T TIGR03680 214 FDVNKPGTPPEKLKGGVIGGSLIQGKLKVGDEIEIRPGIKVEKGGKTKWEPIYTEITSLRAGGYKVEEARPGGLVGVGTK 293 (406)
T ss_pred EeecCCCccccCCceeEEEEEEEeCEEeCCCEEEEccCccccccccccccccceEEeEEEECCEECCEEcCCCEEEEeec
Confidence 98765 577999999999999999999999852 4689999999999999999999999874
Q ss_pred ---ccccccceeeccccCCCCCCCCcccceeeeeeecc---------cCCcccccc-eecchhhhhhhhee
Q psy15197 469 ---NYDQQNVSVGFLLSELSHPCPVSSKFEARIVVFNI---------TTPITIGYP-VTHDITHLTKAAIF 526 (902)
Q Consensus 469 ---~~~~~~i~kG~vL~~~~~~~~~~~~F~a~irvvHa---------kg~ga~G~f-v~~~is~~~~A~if 526 (902)
+++..++.+|++|++++..++.+..|++++.++++ +..+..||. ..+..+....+.+-
T Consensus 294 ~~~~i~~~dv~~G~vl~~~~~~~~~~~~f~a~i~~l~~~~~~~~~~~~~~i~~g~~~~l~~gt~~~~~~v~ 364 (406)
T TIGR03680 294 LDPALTKADALAGQVVGKPGTLPPVWESLELEVHLLERVVGTEEELKVEPIKTGEVLMLNVGTATTVGVVT 364 (406)
T ss_pred cCCCCCHHHcccccEEEcCCCCCCceeEEEEEEEEEecccCcccccccccCCCCCEEEEEEccceEEEEEE
Confidence 56778899999999998767777899999988864 367889997 55544444444443
No 37
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=100.00 E-value=1e-36 Score=348.95 Aligned_cols=252 Identities=26% Similarity=0.402 Sum_probs=203.8
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHH
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQD 329 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~ 329 (902)
.+.++|||||||.+|...+..++..+|++|+|+|++.+.. ..++.+++..+...+++++|+|+||+|+.+. +
T Consensus 84 ~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~------~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~--~ 155 (411)
T PRK04000 84 LRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCP------QPQTKEHLMALDIIGIKNIVIVQNKIDLVSK--E 155 (411)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCC------ChhHHHHHHHHHHcCCCcEEEEEEeeccccc--h
Confidence 3689999999999999999999999999999999998731 3578888888888888778899999999753 2
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCcccHHHHHHh-cCCCCCCCCCCceEEEeeE
Q psy15197 330 RFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDN-FKTPSRPLTKPLRMSVSDI 408 (902)
Q Consensus 330 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L~~-l~~p~~~~~~pl~~~I~~i 408 (902)
...+..+++..+++... ...++++++||++|.|+.+ |++.|.. ++++.+..++|++|+|.++
T Consensus 156 ~~~~~~~~i~~~l~~~~--~~~~~ii~vSA~~g~gI~~---------------L~~~L~~~l~~~~~~~~~~~r~~I~~~ 218 (411)
T PRK04000 156 RALENYEQIKEFVKGTV--AENAPIIPVSALHKVNIDA---------------LIEAIEEEIPTPERDLDKPPRMYVARS 218 (411)
T ss_pred hHHHHHHHHHHHhcccc--CCCCeEEEEECCCCcCHHH---------------HHHHHHHhCCCCCCCCCCCceEEEEee
Confidence 22233344444443321 1346899999999999998 8888876 5666666789999999999
Q ss_pred EeeCC--------CeEEEEEEEEeeEeeCCCEEEEccCCc------------EEEEEEEEEceEeeeeeccCCeEEEeee
Q psy15197 409 YKSTG--------SGYCIAGRVETGVILAGEKVMVQPQNE------------VTTVKAVYVDEMSVSAAYAGDNVSVTLL 468 (902)
Q Consensus 409 ~~v~g--------~G~V~~GrV~sG~Lk~Gd~v~l~p~~~------------~~~V~sI~~~~~~v~~a~aGdiv~I~l~ 468 (902)
|.+++ +|+|+.|+|.+|+|++||.|.+.|.+. ..+|++|++++.++++|.|||.++|++.
T Consensus 219 f~v~~~g~~~~~~~G~Vv~G~v~~G~l~~gd~v~i~P~~~~~~~~~~~~~~~~~~VksI~~~~~~~~~a~~G~~v~i~l~ 298 (411)
T PRK04000 219 FDVNKPGTPPEKLKGGVIGGSLIQGVLKVGDEIEIRPGIKVEEGGKTKWEPITTKIVSLRAGGEKVEEARPGGLVGVGTK 298 (411)
T ss_pred eeecCCCccccCCcceEEEEEEEeCEEecCCEEEEcCCcceecccccccccceEEEeEEEECCEECCEEcCCCEEEEEec
Confidence 98765 467999999999999999999999863 4689999999999999999999999985
Q ss_pred ---ccccccceeeccccCCCCCCCCcccceeeeeeecc---------cCCcccccc-eecchhhhhhhhee
Q psy15197 469 ---NYDQQNVSVGFLLSELSHPCPVSSKFEARIVVFNI---------TTPITIGYP-VTHDITHLTKAAIF 526 (902)
Q Consensus 469 ---~~~~~~i~kG~vL~~~~~~~~~~~~F~a~irvvHa---------kg~ga~G~f-v~~~is~~~~A~if 526 (902)
++...++++|++|+++..+++.+..|+|++.++++ +..+..||. ..+..+..+.+.+.
T Consensus 299 ~~~~i~~~~i~~G~vl~~~~~~~~~~~~f~a~v~~l~~~~~~~~~~~~~~i~~g~~~~l~~~t~~~~~~i~ 369 (411)
T PRK04000 299 LDPSLTKADALAGSVAGKPGTLPPVWESLTIEVHLLERVVGTKEELKVEPIKTGEPLMLNVGTATTVGVVT 369 (411)
T ss_pred cCCCCCHHHccCccEEEcCCCCCCceEEEEEEEEEEEhhcCccccccCCCCCCCCEEEEEEeccEEEEEEE
Confidence 45667899999999998877778899999988876 568899997 55544444444444
No 38
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=100.00 E-value=2.2e-36 Score=359.87 Aligned_cols=258 Identities=23% Similarity=0.428 Sum_probs=218.3
Q ss_pred cccCCeEEeeeEEEEEE-CCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhC
Q psy15197 232 ALNRGITMDVGQSQFET-KTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLG 310 (902)
Q Consensus 232 e~~rGiTid~~~~~~~~-~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~ 310 (902)
|+++|+|++..+..+.. ++..++|||||||++|.+.+..++..+|++++|||+++|++ +|+.+++.++..++
T Consensus 31 E~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~-------~qT~ehl~il~~lg 103 (614)
T PRK10512 31 EKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVM-------AQTREHLAILQLTG 103 (614)
T ss_pred cccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCc-------HHHHHHHHHHHHcC
Confidence 37899999998888866 46789999999999999999999999999999999999844 69999999999999
Q ss_pred CCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCcccHHHHHHhc
Q psy15197 311 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNF 390 (902)
Q Consensus 311 i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L~~l 390 (902)
++.+|||+||+|+++ ++.+..+.+++..+++..++. ..+++++||++|.|+++ |.+.|..+
T Consensus 104 i~~iIVVlNKiDlv~--~~~~~~v~~ei~~~l~~~~~~--~~~ii~VSA~tG~gI~~---------------L~~~L~~~ 164 (614)
T PRK10512 104 NPMLTVALTKADRVD--EARIAEVRRQVKAVLREYGFA--EAKLFVTAATEGRGIDA---------------LREHLLQL 164 (614)
T ss_pred CCeEEEEEECCccCC--HHHHHHHHHHHHHHHHhcCCC--CCcEEEEeCCCCCCCHH---------------HHHHHHHh
Confidence 888789999999975 455666677777777766552 45899999999999998 99999888
Q ss_pred CCCCCCCCCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCcEEEEEEEEEceEeeeeeccCCeEEEeeec-
Q psy15197 391 KTPSRPLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYVDEMSVSAAYAGDNVSVTLLN- 469 (902)
Q Consensus 391 ~~p~~~~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~~~~~v~~a~aGdiv~I~l~~- 469 (902)
+.+....++|++|+|+++|.++|.|+|++|+|.+|+|++||.|.+.|.+...+|++|++++.++++|.||++++|++.+
T Consensus 165 ~~~~~~~~~~~rl~Id~vf~v~G~GtVvtGtv~sG~l~~Gd~v~i~p~~~~~~VrsIq~~~~~v~~a~aG~rval~l~g~ 244 (614)
T PRK10512 165 PEREHAAQHRFRLAIDRAFTVKGAGLVVTGTALSGEVKVGDTLWLTGVNKPMRVRGLHAQNQPTEQAQAGQRIALNIAGD 244 (614)
T ss_pred hccccCcCCCceEEEEEEeccCCCeEEEEEEEecceEecCCEEEEcCCCCcEEEEEEecCCcCCCEEeCCCeEEEEecCC
Confidence 7777667899999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred cccccceeeccccCCCCCCCCcccceeeeeeecccCCcccccc-eecchhh
Q psy15197 470 YDQQNVSVGFLLSELSHPCPVSSKFEARIVVFNITTPITIGYP-VTHDITH 519 (902)
Q Consensus 470 ~~~~~i~kG~vL~~~~~~~~~~~~F~a~irvvHakg~ga~G~f-v~~~is~ 519 (902)
++.+++++|++|+++. +...+..+ +..++....+.+|+. ..+..+.
T Consensus 245 ~~~~~i~rGdvl~~~~-~~~~~~~~---~~~l~~~~~l~~~~~~~~~~gt~ 291 (614)
T PRK10512 245 AEKEQINRGDWLLADA-PPEPFTRV---IVELQTHTPLTQWQPLHIHHAAS 291 (614)
T ss_pred CChhhCCCcCEEeCCC-CCccceeE---EEEEcCCccCCCCCEEEEEEccc
Confidence 7888999999999864 33323333 333455566778887 4444443
No 39
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-35 Score=324.62 Aligned_cols=293 Identities=25% Similarity=0.327 Sum_probs=231.8
Q ss_pred hhhcccccccccccccCCeEEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchh
Q psy15197 219 LVMRIVPLEGIASALNRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQ 298 (902)
Q Consensus 219 ~~~d~~~~~~~~~e~~rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~q 298 (902)
.+|||.++| ++|||||-.+...+.|++++|+|+|||||.||-.++.+.++-.|.+||+|||.+|++ +|
T Consensus 41 RvMDSnDlE-----kERGITILaKnTav~~~~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpM-------PQ 108 (603)
T COG1217 41 RVMDSNDLE-----KERGITILAKNTAVNYNGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPM-------PQ 108 (603)
T ss_pred hhcCccchh-----hhcCcEEEeccceeecCCeEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCCC-------Cc
Confidence 479999999 999999999999999999999999999999999999999999999999999999977 79
Q ss_pred hHHHHHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCC--CCceEecCCCccCCCCCCCCCCccccc
Q psy15197 299 TREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRD--SDIEYVPCSGLTGENLTTPSQVPALTS 376 (902)
Q Consensus 299 t~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~--~~~~ii~iSA~~G~gI~~~~~~~~~~~ 376 (902)
|+..++.+.+.|.++| ||+||+|.++..+ .++.+++..++-.++.+. -.+|+++.||+.|..-..+... .
T Consensus 109 TrFVlkKAl~~gL~PI-VVvNKiDrp~Arp---~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~----~ 180 (603)
T COG1217 109 TRFVLKKALALGLKPI-VVINKIDRPDARP---DEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDE----A 180 (603)
T ss_pred hhhhHHHHHHcCCCcE-EEEeCCCCCCCCH---HHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCcccc----c
Confidence 9999999999999987 9999999986543 445555555555555432 3469999999999754432221 1
Q ss_pred ccCcccHHHHHHhcCCCCCCCCCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCc---EEEEEEEE----E
Q psy15197 377 WYSGPCLLDVIDNFKTPSRPLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNE---VTTVKAVY----V 449 (902)
Q Consensus 377 w~~g~~Lle~L~~l~~p~~~~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~---~~~V~sI~----~ 449 (902)
-.-.|++..+++++++|....++||.|+|...-+.++.|++..|||++|++|+|+.|.+...+. ..+|..+. .
T Consensus 181 ~~m~pLfe~I~~hvp~P~~~~d~PlQ~qvt~Ldyn~y~GrIgigRi~~G~vk~~q~V~~i~~~g~~~~gri~kllgf~GL 260 (603)
T COG1217 181 DDMAPLFETILDHVPAPKGDLDEPLQMQVTQLDYNSYVGRIGIGRIFRGTVKPNQQVALIKSDGTTENGRITKLLGFLGL 260 (603)
T ss_pred cchhHHHHHHHHhCCCCCCCCCCCeEEEEEeeccccccceeEEEEEecCcccCCCeEEEEcCCCcEEeeEEEeeeeccce
Confidence 1122445566788999998889999999999999999999999999999999999999876543 45666664 4
Q ss_pred ceEeeeeeccCCeEEEeeeccccccceeeccccCCCCCCCCcc------cceeeeeeecccCCcccccceecchhhhhhh
Q psy15197 450 DEMSVSAAYAGDNVSVTLLNYDQQNVSVGFLLSELSHPCPVSS------KFEARIVVFNITTPITIGYPVTHDITHLTKA 523 (902)
Q Consensus 450 ~~~~v~~a~aGdiv~I~l~~~~~~~i~kG~vL~~~~~~~~~~~------~F~a~irvvHakg~ga~G~fv~~~is~~~~A 523 (902)
.+.++++|.|||+|+|++. .++..|+++|++.++..++. .....+.+...+-+|..|-||+. ...+.
T Consensus 261 ~R~ei~eA~AGDIVaiaG~----~~~~igdTi~d~~~~~aLp~l~iDePTlsMtf~vN~SPfAG~EGk~vTS---R~i~d 333 (603)
T COG1217 261 ERIEIEEAEAGDIVAIAGL----EDINIGDTICDPDNPEALPALSVDEPTLSMTFSVNDSPFAGKEGKFVTS---RQIRD 333 (603)
T ss_pred eeeecccccccCEEEEcCc----ccccccccccCCCCccCCCCcccCCCceEEEEEecCCCCCCcCCceeeH---HHHHH
Confidence 7889999999999999998 78999999999887543322 23345567788999999999653 22233
Q ss_pred heecccCceeeEEEEEe
Q psy15197 524 AIFSEIGKQTPVAARFS 540 (902)
Q Consensus 524 ~if~~~gk~tpv~vRFS 540 (902)
++..+ -.+-|.+|..
T Consensus 334 RL~~E--l~~NValrVe 348 (603)
T COG1217 334 RLNKE--LETNVALRVE 348 (603)
T ss_pred HHHHH--hhhceeEEEe
Confidence 34332 2456777765
No 40
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=100.00 E-value=1.3e-35 Score=317.34 Aligned_cols=265 Identities=29% Similarity=0.454 Sum_probs=224.4
Q ss_pred CCeEEEEEeCCCccchHHHHHHHHH--HcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCc
Q psy15197 249 KTKYITLLDAPGHKDFIPNMITGAT--QADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSW 326 (902)
Q Consensus 249 ~~~~i~lIDTPG~~df~~~~~~~l~--~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~ 326 (902)
.++.+.|+||-||+.++..+++++- ..|..+|||.|++|++ ..+++|+.++...++| +||+++|+|+.+
T Consensus 199 aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~-------~~tkEHLgi~~a~~lP-viVvvTK~D~~~- 269 (527)
T COG5258 199 ADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVT-------KMTKEHLGIALAMELP-VIVVVTKIDMVP- 269 (527)
T ss_pred cccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcc-------hhhhHhhhhhhhhcCC-EEEEEEecccCc-
Confidence 4688999999999999999999995 6899999999999965 6899999999999988 569999999986
Q ss_pred hHHHHHHHHHHHHHhhhhcCCC--------------------CCCceEecCCCccCCCCCCCCCCcccccccCcccHHHH
Q psy15197 327 SQDRFQEIVTKLGAFLKQAGFR--------------------DSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDV 386 (902)
Q Consensus 327 ~~~~~~~i~~~l~~~l~~~~~~--------------------~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~ 386 (902)
.++++.+.+++..+|+..+-- ..-+|++.+|+.+|+|++- |.+.
T Consensus 270 -ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~Gldl---------------L~e~ 333 (527)
T COG5258 270 -DDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDL---------------LDEF 333 (527)
T ss_pred -HHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHH---------------HHHH
Confidence 678888888888888865521 1147999999999999985 6677
Q ss_pred HHhcCCCCC-CCCCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCc----EEEEEEEEEceEeeeeeccCC
Q psy15197 387 IDNFKTPSR-PLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNE----VTTVKAVYVDEMSVSAAYAGD 461 (902)
Q Consensus 387 L~~l~~p~~-~~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~----~~~V~sI~~~~~~v~~a~aGd 461 (902)
+..+|.... ....||.|.|+++|++.|+|+|+.|.|.+|.|+.||.++++|.+. .++|+||++++..+++|.||.
T Consensus 334 f~~Lp~rr~~~d~g~flmYId~iYsVtGVGtVvsGsV~~G~l~~gd~vllGP~~~G~fr~v~vkSIemh~~rvdsa~aG~ 413 (527)
T COG5258 334 FLLLPKRRRWDDEGPFLMYIDKIYSVTGVGTVVSGSVKSGILHVGDTVLLGPFKDGKFREVVVKSIEMHHYRVDSAKAGS 413 (527)
T ss_pred HHhCCcccccCCCCCeEEEEEeeEEEeeeEEEEeeeEEeeeeccCCEEEEccCCCCcEEEEEEEEEEEeeEEeccccCCc
Confidence 777766533 456899999999999999999999999999999999999999763 678999999999999999999
Q ss_pred eEEEeeeccccccceeeccccCCCCCCCCcccceeeeeeecccCCcccccc-eecchhhhhhhheecc-------cCcee
Q psy15197 462 NVSVTLLNYDQQNVSVGFLLSELSHPCPVSSKFEARIVVFNITTPITIGYP-VTHDITHLTKAAIFSE-------IGKQT 533 (902)
Q Consensus 462 iv~I~l~~~~~~~i~kG~vL~~~~~~~~~~~~F~a~irvvHakg~ga~G~f-v~~~is~~~~A~if~~-------~gk~t 533 (902)
+++++++++.++.+++||+|... ..|.+.++|+|++.++|||..+..||- +.|--+. ..+.-|.+ +|..-
T Consensus 414 iig~Al~gv~~e~lerGMVl~~~-~~pkaVref~AeV~vl~HPT~I~aGye~v~H~etI-~e~~~f~~id~~~L~~GD~g 491 (527)
T COG5258 414 IIGIALKGVEKEELERGMVLSAG-ADPKAVREFDAEVLVLRHPTTIRAGYEPVFHYETI-REAVYFEEIDKGFLMPGDRG 491 (527)
T ss_pred EEEEEecccCHHHHhcceEecCC-CCchhhheecceEEEEeCCcEEecCceeeeEeeEe-eheeEEEEcccccccCCCcc
Confidence 99999999999999999999987 566778999999999999999999998 7764222 22323322 45555
Q ss_pred eEEEEEe
Q psy15197 534 PVAARFS 540 (902)
Q Consensus 534 pv~vRFS 540 (902)
-+.+||+
T Consensus 492 ~vr~~fk 498 (527)
T COG5258 492 VVRMRFK 498 (527)
T ss_pred eEEEEEE
Confidence 6666776
No 41
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=100.00 E-value=4.3e-35 Score=347.22 Aligned_cols=245 Identities=28% Similarity=0.346 Sum_probs=197.2
Q ss_pred hhcccccccccccccCCeEEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhh
Q psy15197 220 VMRIVPLEGIASALNRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQT 299 (902)
Q Consensus 220 ~~d~~~~~~~~~e~~rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt 299 (902)
+||+.++| ++||+|+......+.|+++.|+|||||||.+|...+..+++.+|++|||||+++|+ ..|+
T Consensus 38 ~~D~~~~E-----rerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~-------~~qT 105 (594)
T TIGR01394 38 VMDSNDLE-----RERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGP-------MPQT 105 (594)
T ss_pred cccCchHH-----HhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCC-------cHHH
Confidence 56666666 99999999999999999999999999999999999999999999999999999984 3699
Q ss_pred HHHHHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCC--CCceEecCCCccCCCCCCCCCCcccccc
Q psy15197 300 REHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRD--SDIEYVPCSGLTGENLTTPSQVPALTSW 377 (902)
Q Consensus 300 ~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~--~~~~ii~iSA~~G~gI~~~~~~~~~~~w 377 (902)
+.++..+...++|. |||+||+|+.+. +..++.+++..++..++... ..+|++++||++|.+...... .++
T Consensus 106 ~~~l~~a~~~~ip~-IVviNKiD~~~a---~~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~----~~~ 177 (594)
T TIGR01394 106 RFVLKKALELGLKP-IVVINKIDRPSA---RPDEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDD----PSD 177 (594)
T ss_pred HHHHHHHHHCCCCE-EEEEECCCCCCc---CHHHHHHHHHHHHHhhccccccccCcEEechhhcCcccccCcc----ccc
Confidence 99999999999884 699999998753 23444555555555444432 246899999999986544211 111
Q ss_pred cCcccHHHHHHhcCCCCCCCCCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCc---EEEEEEEEE----c
Q psy15197 378 YSGPCLLDVIDNFKTPSRPLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNE---VTTVKAVYV----D 450 (902)
Q Consensus 378 ~~g~~Lle~L~~l~~p~~~~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~---~~~V~sI~~----~ 450 (902)
.-.+.|..+++.+++|....++|++++|++++.+++.|++++|||++|+|++||.|.+.+.+. ..+|++|+. .
T Consensus 178 gi~~Lld~Iv~~lP~P~~~~~~pl~~~V~~i~~d~~~Grv~~gRV~sG~lk~G~~V~~~~~~~~~~~~kV~~i~~~~g~~ 257 (594)
T TIGR01394 178 NMAPLFDAIVRHVPAPKGDLDEPLQMLVTNLDYDEYLGRIAIGRVHRGTVKKGQQVALMKRDGTIENGRISKLLGFEGLE 257 (594)
T ss_pred CHHHHHHHHHHhCCCCCCCCCCCEEEEEEEEEeeCCCceEEEEEEEeCEEccCCEEEEecCCCceeEEEEEEEEEccCCC
Confidence 111234455566777766778999999999999999999999999999999999999998743 468888885 4
Q ss_pred eEeeeeeccCCeEEEeeeccccccceeeccccCCCCCC
Q psy15197 451 EMSVSAAYAGDNVSVTLLNYDQQNVSVGFLLSELSHPC 488 (902)
Q Consensus 451 ~~~v~~a~aGdiv~I~l~~~~~~~i~kG~vL~~~~~~~ 488 (902)
+.++++|.|||+|+|... +++++|++|+++.++.
T Consensus 258 ~~~v~~a~aGDiv~i~gl----~~i~~Gdtl~~~~~~~ 291 (594)
T TIGR01394 258 RVEIDEAGAGDIVAVAGL----EDINIGETIADPEVPE 291 (594)
T ss_pred ceECCEECCCCEEEEeCC----cccCCCCEEeCCCccc
Confidence 789999999999999864 6899999999877643
No 42
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=100.00 E-value=1.1e-34 Score=344.56 Aligned_cols=231 Identities=29% Similarity=0.491 Sum_probs=197.5
Q ss_pred cccCCeEEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCC
Q psy15197 232 ALNRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGV 311 (902)
Q Consensus 232 e~~rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i 311 (902)
|+++|+|++.....+.++++.++|||||||++|...+..++..+|++|+|||+++|++ .++.+++.++...++
T Consensus 31 E~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~-------~qT~ehl~il~~lgi 103 (581)
T TIGR00475 31 EKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVM-------TQTGEHLAVLDLLGI 103 (581)
T ss_pred HhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCC
Confidence 3679999999999999999999999999999999999999999999999999999843 689999998888998
Q ss_pred CeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCcccHHHHHHhcC
Q psy15197 312 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNFK 391 (902)
Q Consensus 312 ~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L~~l~ 391 (902)
+++|||+||+|+++ .+.+..+.+++..+++..++. ..++++++||++|.|+.++.. .+.+.++.+.
T Consensus 104 ~~iIVVlNK~Dlv~--~~~~~~~~~ei~~~l~~~~~~-~~~~ii~vSA~tG~GI~eL~~-----------~L~~l~~~~~ 169 (581)
T TIGR00475 104 PHTIVVITKADRVN--EEEIKRTEMFMKQILNSYIFL-KNAKIFKTSAKTGQGIGELKK-----------ELKNLLESLD 169 (581)
T ss_pred CeEEEEEECCCCCC--HHHHHHHHHHHHHHHHHhCCC-CCCcEEEEeCCCCCCchhHHH-----------HHHHHHHhCC
Confidence 87889999999985 344555556666667665542 246899999999999998322 1333334443
Q ss_pred CCCCCCCCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCcEEEEEEEEEceEeeeeeccCCeEEEeeeccc
Q psy15197 392 TPSRPLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYVDEMSVSAAYAGDNVSVTLLNYD 471 (902)
Q Consensus 392 ~p~~~~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~~~~~v~~a~aGdiv~I~l~~~~ 471 (902)
+. ..+.|++|+|+++|.++|.|+|++|+|.+|+|++||.|.+.|.+...+|++|+.++.++++|.||+.|+|.+.+++
T Consensus 170 ~~--~~~~p~r~~Id~~f~v~G~GtVv~G~v~~G~i~~Gd~l~i~P~~~~~~Vr~iq~~~~~v~~a~aG~rval~L~~i~ 247 (581)
T TIGR00475 170 IK--RIQKPLRMAIDRAFKVKGAGTVVTGTAFSGEVKVGDNLRLLPINHEVRVKAIQAQNQDVEIAYAGQRIALNLMDVE 247 (581)
T ss_pred Cc--CcCCCcEEEEEEEEecCCcEEEEEEEEecceEecCCEEEECCCCceEEEeEEEECCccCCEEECCCEEEEEeCCCC
Confidence 32 2578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeeccccCCC
Q psy15197 472 QQNVSVGFLLSELS 485 (902)
Q Consensus 472 ~~~i~kG~vL~~~~ 485 (902)
..++++|.+++.+.
T Consensus 248 ~~~i~rG~~~~~~~ 261 (581)
T TIGR00475 248 PESLKRGLLILTPE 261 (581)
T ss_pred HHHcCCceEEcCCC
Confidence 89999997776654
No 43
>KOG0462|consensus
Probab=100.00 E-value=5.4e-35 Score=325.17 Aligned_cols=236 Identities=27% Similarity=0.311 Sum_probs=198.1
Q ss_pred cccCCeEEeeeEEEEEECC---eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHH
Q psy15197 232 ALNRGITMDVGQSQFETKT---KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRS 308 (902)
Q Consensus 232 e~~rGiTid~~~~~~~~~~---~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~ 308 (902)
||+||||+.....++.|++ +.+++||||||.||..++.+.+..||++||||||++| ++.||...+.++.+
T Consensus 103 ERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qG-------vqAQT~anf~lAfe 175 (650)
T KOG0462|consen 103 ERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQG-------VQAQTVANFYLAFE 175 (650)
T ss_pred hhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccceehehhhhcCceEEEEEcCcC-------chHHHHHHHHHHHH
Confidence 3999999999999999998 9999999999999999999999999999999999999 55899998888889
Q ss_pred hCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCcccHHHHHH
Q psy15197 309 LGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVID 388 (902)
Q Consensus 309 ~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L~ 388 (902)
.|.. +|.|+||+|++..+.++.+....++ +. .. ..+++.+||++|.|+.+ .|..+|+
T Consensus 176 ~~L~-iIpVlNKIDlp~adpe~V~~q~~~l---F~---~~--~~~~i~vSAK~G~~v~~--------------lL~AII~ 232 (650)
T KOG0462|consen 176 AGLA-IIPVLNKIDLPSADPERVENQLFEL---FD---IP--PAEVIYVSAKTGLNVEE--------------LLEAIIR 232 (650)
T ss_pred cCCe-EEEeeeccCCCCCCHHHHHHHHHHH---hc---CC--ccceEEEEeccCccHHH--------------HHHHHHh
Confidence 8977 6699999999987766554433333 32 22 23789999999999998 2445567
Q ss_pred hcCCCCCCCCCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCcEEEEEEEEE---ceEeeeeeccCCeEEE
Q psy15197 389 NFKTPSRPLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYV---DEMSVSAAYAGDNVSV 465 (902)
Q Consensus 389 ~l~~p~~~~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~---~~~~v~~a~aGdiv~I 465 (902)
.+|||....++||++.+++++.+.+.|.++.++|..|.|+.||+|....+++...|+.|.+ +..++.+..||+.+.|
T Consensus 233 rVPpP~~~~d~plr~Lifds~yD~y~G~I~~vrv~~G~vrkGdkV~~~~t~~~yev~~vgvm~p~~~~~~~l~agqvGyI 312 (650)
T KOG0462|consen 233 RVPPPKGIRDAPLRMLIFDSEYDEYRGVIALVRVVDGVVRKGDKVQSAATGKSYEVKVVGVMRPEMTPVVELDAGQVGYI 312 (650)
T ss_pred hCCCCCCCCCcchHHHhhhhhhhhhcceEEEEEEeeeeeecCCEEEEeecCcceEeEEeEEeccCceeeeeeccccccee
Confidence 8999999999999999999999999999999999999999999999999988777777765 5567777888888777
Q ss_pred eeeccccccceeeccccCCC--CCCCCcccceee
Q psy15197 466 TLLNYDQQNVSVGFLLSELS--HPCPVSSKFEAR 497 (902)
Q Consensus 466 ~l~~~~~~~i~kG~vL~~~~--~~~~~~~~F~a~ 497 (902)
....-+.++.+.|++++... .+.+....|+..
T Consensus 313 i~~mr~~~ea~IGdTi~~~~~~~~v~tl~~~~~~ 346 (650)
T KOG0462|consen 313 ICNMRNVKEAQIGDTIAHKSVTKAVETLPGFEPT 346 (650)
T ss_pred EecccccccccccceeeecccCcccCcCCCCCCC
Confidence 77665678899999998776 444555566643
No 44
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.3e-34 Score=316.73 Aligned_cols=240 Identities=27% Similarity=0.444 Sum_probs=211.4
Q ss_pred ccccCCeEEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhC
Q psy15197 231 SALNRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLG 310 (902)
Q Consensus 231 ~e~~rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~ 310 (902)
+|++||+|+|+.+.++..+++.+.|||+|||++|+..++.++...|+++||||+++|+ ..|+.||+..+..+|
T Consensus 30 EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl-------~~qtgEhL~iLdllg 102 (447)
T COG3276 30 EEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGL-------MAQTGEHLLILDLLG 102 (447)
T ss_pred hhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCc-------chhhHHHHHHHHhcC
Confidence 4589999999999999999999999999999999999999999999999999999994 479999999999999
Q ss_pred CCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCcccHHHHHHhc
Q psy15197 311 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNF 390 (902)
Q Consensus 311 i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L~~l 390 (902)
++..|||+||+|.++ ++++++..+++...+. + ++.+++.+|+++|+||++ |.+.|..+
T Consensus 103 i~~giivltk~D~~d--~~r~e~~i~~Il~~l~---l--~~~~i~~~s~~~g~GI~~---------------Lk~~l~~L 160 (447)
T COG3276 103 IKNGIIVLTKADRVD--EARIEQKIKQILADLS---L--ANAKIFKTSAKTGRGIEE---------------LKNELIDL 160 (447)
T ss_pred CCceEEEEecccccc--HHHHHHHHHHHHhhcc---c--ccccccccccccCCCHHH---------------HHHHHHHh
Confidence 999899999999986 4455555555544333 3 456889999999999999 88888777
Q ss_pred CC-CCCCCCCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCcEEEEEEEEEceEeeeeeccCCeEEEeeec
Q psy15197 391 KT-PSRPLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYVDEMSVSAAYAGDNVSVTLLN 469 (902)
Q Consensus 391 ~~-p~~~~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~~~~~v~~a~aGdiv~I~l~~ 469 (902)
+. ..+..+.||+++|+..|.++|+|+|++|.+.||++++||++++.|.+..++|+||+.+..++++|.||++|++++.+
T Consensus 161 ~~~~e~d~~~~fri~IDraFtVKGvGTVVtGtv~sG~V~v~D~L~l~p~~k~v~VRsIq~~d~d~~~a~AG~RVgLaL~~ 240 (447)
T COG3276 161 LEEIERDEQKPFRIAIDRAFTVKGVGTVVTGTVLSGEVKVGDKLYLSPINKEVRVRSIQAHDVDVEEAKAGQRVGLALKG 240 (447)
T ss_pred hhhhhhccCCceEEEEeeEEEeccccEEEEeEEeeeeEEECCEEEEecCCCeEEEEeeeecCcchhhccccceeeeecCC
Confidence 73 55677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceeeccccCCCCCCCCcccceeeeee
Q psy15197 470 YDQQNVSVGFLLSELSHPCPVSSKFEARIVV 500 (902)
Q Consensus 470 ~~~~~i~kG~vL~~~~~~~~~~~~F~a~irv 500 (902)
...+++.+|++|.++... .....|...+.+
T Consensus 241 v~~eei~RG~~L~~~~~~-~v~~~~~~~~~i 270 (447)
T COG3276 241 VEKEEIERGDWLLKPEPL-EVTTRLIVELEI 270 (447)
T ss_pred CCHHHhhcccEeccCCCC-CcceEEEEEEEe
Confidence 999999999999987643 334455554433
No 45
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.9e-34 Score=314.51 Aligned_cols=233 Identities=24% Similarity=0.344 Sum_probs=199.4
Q ss_pred hhcccccccccccccCCeEEeeeEEEEEEC-----CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccC
Q psy15197 220 VMRIVPLEGIASALNRGITMDVGQSQFETK-----TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFE 294 (902)
Q Consensus 220 ~~d~~~~~~~~~e~~rGiTid~~~~~~~~~-----~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~ 294 (902)
++|++++| |+|||||......+.++ .+.++|||||||.||.-++.+++..|.++||||||+.|
T Consensus 45 ~LDsMdiE-----RERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQG------- 112 (603)
T COG0481 45 VLDSMDIE-----RERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG------- 112 (603)
T ss_pred hhhhhhhH-----hhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccc-------
Confidence 35677777 99999999999988775 38999999999999999999999999999999999999
Q ss_pred CchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCCCCccc
Q psy15197 295 SGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPAL 374 (902)
Q Consensus 295 ~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~ 374 (902)
++.||.....++...+.. +|-|+||+||+..+.++.++..+++ +|++.. ..+.+|||+|.||++
T Consensus 113 veAQTlAN~YlAle~~Le-IiPViNKIDLP~Adpervk~eIe~~------iGid~~--dav~~SAKtG~gI~~------- 176 (603)
T COG0481 113 VEAQTLANVYLALENNLE-IIPVLNKIDLPAADPERVKQEIEDI------IGIDAS--DAVLVSAKTGIGIED------- 176 (603)
T ss_pred hHHHHHHHHHHHHHcCcE-EEEeeecccCCCCCHHHHHHHHHHH------hCCCcc--hheeEecccCCCHHH-------
Confidence 557998888888888876 6689999999987776655444433 345322 468899999999999
Q ss_pred ccccCcccHHHHHHhcCCCCCCCCCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCcEEEEEEEEE---ce
Q psy15197 375 TSWYSGPCLLDVIDNFKTPSRPLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYV---DE 451 (902)
Q Consensus 375 ~~w~~g~~Lle~L~~l~~p~~~~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~---~~ 451 (902)
.|...++.+|+|....+.|++..|++.+.+++.|.|+..||..|+|++||+|.+..++....|..+.+ ..
T Consensus 177 -------iLe~Iv~~iP~P~g~~~~pLkALifDS~yD~Y~GVv~~vRi~dG~ik~gdki~~m~tg~~y~V~evGvftP~~ 249 (603)
T COG0481 177 -------VLEAIVEKIPPPKGDPDAPLKALIFDSWYDNYLGVVVLVRIFDGTLKKGDKIRMMSTGKEYEVDEVGIFTPKM 249 (603)
T ss_pred -------HHHHHHhhCCCCCCCCCCcceEEEEeccccccceEEEEEEEeeceecCCCEEEEEecCCEEEEEEEeeccCCc
Confidence 24445578999998999999999999999999999999999999999999999999999989988876 45
Q ss_pred EeeeeeccCCeEEEeeeccccccceeeccccCCCCC
Q psy15197 452 MSVSAAYAGDNVSVTLLNYDQQNVSVGFLLSELSHP 487 (902)
Q Consensus 452 ~~v~~a~aGdiv~I~l~~~~~~~i~kG~vL~~~~~~ 487 (902)
.+.+++.+|+++.+.....+..+.+.|+++....++
T Consensus 250 ~~~~~L~aGeVG~~~a~iK~v~d~~VGDTiT~~~~p 285 (603)
T COG0481 250 VKVDELKAGEVGYIIAGIKDVRDARVGDTITLASNP 285 (603)
T ss_pred cccccccCCceeEEEEeeeecccCcccceEeccCCC
Confidence 677889999999999988888999999999865544
No 46
>PRK10218 GTP-binding protein; Provisional
Probab=100.00 E-value=5.7e-33 Score=328.70 Aligned_cols=243 Identities=25% Similarity=0.298 Sum_probs=194.3
Q ss_pred hhcccccccccccccCCeEEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhh
Q psy15197 220 VMRIVPLEGIASALNRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQT 299 (902)
Q Consensus 220 ~~d~~~~~~~~~e~~rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt 299 (902)
+||+.++| +++|+|+......++++++.++|||||||.+|...+..+++.+|++|||||+++|+ ..++
T Consensus 42 v~D~~~~E-----~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~-------~~qt 109 (607)
T PRK10218 42 VMDSNDLE-----KERGITILAKNTAIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGP-------MPQT 109 (607)
T ss_pred eecccccc-----ccCceEEEEEEEEEecCCEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCc-------cHHH
Confidence 46666666 89999999999999999999999999999999999999999999999999999984 3689
Q ss_pred HHHHHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCC--CCCceEecCCCccCCCCCCCCCC-ccccc
Q psy15197 300 REHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFR--DSDIEYVPCSGLTGENLTTPSQV-PALTS 376 (902)
Q Consensus 300 ~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~--~~~~~ii~iSA~~G~gI~~~~~~-~~~~~ 376 (902)
+.++..+...++|. |||+||+|+.+.+ ...+.+++..++..++.. ...+|++++||++|.+..+.... ..+.
T Consensus 110 ~~~l~~a~~~gip~-IVviNKiD~~~a~---~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~- 184 (607)
T PRK10218 110 RFVTKKAFAYGLKP-IVVINKVDRPGAR---PDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMT- 184 (607)
T ss_pred HHHHHHHHHcCCCE-EEEEECcCCCCCc---hhHHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchH-
Confidence 99998888899885 5899999987532 334445555555433332 13479999999999865442110 0011
Q ss_pred ccCcccHHHHHHhcCCCCCCCCCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccC-Cc--EEEEEEEEE----
Q psy15197 377 WYSGPCLLDVIDNFKTPSRPLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQ-NE--VTTVKAVYV---- 449 (902)
Q Consensus 377 w~~g~~Lle~L~~l~~p~~~~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~-~~--~~~V~sI~~---- 449 (902)
+.|..+++.+++|....++||+++|++++.++++|++++|||++|+|++||.|.+.+. +. ..+|.+|+.
T Consensus 185 ----~Lld~Ii~~iP~P~~~~~~Pl~~~V~k~~~d~~~G~i~~gRV~sG~lk~Gd~v~~~~~~~~~~~~rv~~l~~~~g~ 260 (607)
T PRK10218 185 ----PLYQAIVDHVPAPDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVTIIDSEGKTRNAKVGKVLGHLGL 260 (607)
T ss_pred ----HHHHHHHHhCCCCCCCCCCCeEEEEEeeEecCCCcEEEEEEEEeCcCcCCCEEEEecCCCcEeeEEEEEEEEEecC
Confidence 1244556678888777789999999999999999999999999999999999999876 33 467877764
Q ss_pred ceEeeeeeccCCeEEEeeeccccccceeeccccCCCCC
Q psy15197 450 DEMSVSAAYAGDNVSVTLLNYDQQNVSVGFLLSELSHP 487 (902)
Q Consensus 450 ~~~~v~~a~aGdiv~I~l~~~~~~~i~kG~vL~~~~~~ 487 (902)
.+.++++|.|||+|+|.+. ++++.|++|++..++
T Consensus 261 ~~~~v~~a~AGdIvai~gl----~~~~~GdTl~~~~~~ 294 (607)
T PRK10218 261 ERIETDLAEAGDIVAITGL----GELNISDTVCDTQNV 294 (607)
T ss_pred CceECCEEcCCCEEEEECc----cccccCcEEecCCCc
Confidence 4789999999999999885 789999999877654
No 47
>PRK05433 GTP-binding protein LepA; Provisional
Probab=100.00 E-value=1.5e-32 Score=326.65 Aligned_cols=224 Identities=25% Similarity=0.325 Sum_probs=182.7
Q ss_pred ccCCeEEeeeEEEEEEC-----CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHH
Q psy15197 233 LNRGITMDVGQSQFETK-----TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVR 307 (902)
Q Consensus 233 ~~rGiTid~~~~~~~~~-----~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~ 307 (902)
++||+|++.....+.|. ++.++|||||||.+|...+..+++.+|++|||||+++++ ..++.+++..+.
T Consensus 51 rerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv-------~~qt~~~~~~~~ 123 (600)
T PRK05433 51 RERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGV-------EAQTLANVYLAL 123 (600)
T ss_pred hhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCC-------CHHHHHHHHHHH
Confidence 88999999888888775 688999999999999999999999999999999999983 467888887777
Q ss_pred HhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCcccHHHHH
Q psy15197 308 SLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVI 387 (902)
Q Consensus 308 ~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L 387 (902)
..+++ +|+|+||+|+.+.+. ..+.+++... +++. ...++++||++|.|+.+ |++.|
T Consensus 124 ~~~lp-iIvViNKiDl~~a~~---~~v~~ei~~~---lg~~--~~~vi~iSAktG~GI~~---------------Ll~~I 179 (600)
T PRK05433 124 ENDLE-IIPVLNKIDLPAADP---ERVKQEIEDV---IGID--ASDAVLVSAKTGIGIEE---------------VLEAI 179 (600)
T ss_pred HCCCC-EEEEEECCCCCcccH---HHHHHHHHHH---hCCC--cceEEEEecCCCCCHHH---------------HHHHH
Confidence 77876 679999999875322 2223333332 2331 12589999999999998 77777
Q ss_pred H-hcCCCCCCCCCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCcEEEEEEEEE---ceEeeeeeccCCeE
Q psy15197 388 D-NFKTPSRPLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYV---DEMSVSAAYAGDNV 463 (902)
Q Consensus 388 ~-~l~~p~~~~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~---~~~~v~~a~aGdiv 463 (902)
. .+++|....++|+++.|++++.+++.|+|++|||++|+|+.||.|.+.+++...+|.+|.+ +..+++++.|||++
T Consensus 180 ~~~lp~P~~~~~~pl~~~Vfd~~~d~~~G~v~~~rV~sG~Lk~Gd~i~~~~~~~~~~V~~i~~~~~~~~~v~~~~aGdIg 259 (600)
T PRK05433 180 VERIPPPKGDPDAPLKALIFDSWYDNYRGVVVLVRVVDGTLKKGDKIKMMSTGKEYEVDEVGVFTPKMVPVDELSAGEVG 259 (600)
T ss_pred HHhCccccCCCCCCceEEEEEEEecCCCceEEEEEEEcCEEecCCEEEEecCCceEEEEEeeccCCCceECcEEcCCCEE
Confidence 4 5666766778999999999999999999999999999999999999999998889999886 46789999999977
Q ss_pred EEeeeccccccceeeccccCCCCC
Q psy15197 464 SVTLLNYDQQNVSVGFLLSELSHP 487 (902)
Q Consensus 464 ~I~l~~~~~~~i~kG~vL~~~~~~ 487 (902)
.+.......+++++|++|+...++
T Consensus 260 ~i~~~ik~~~~~~~Gdtl~~~~~~ 283 (600)
T PRK05433 260 YIIAGIKDVRDARVGDTITLAKNP 283 (600)
T ss_pred EEecccccccccCCCCEEECCCCc
Confidence 765432244789999999877654
No 48
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=100.00 E-value=2.6e-32 Score=324.35 Aligned_cols=225 Identities=25% Similarity=0.313 Sum_probs=181.3
Q ss_pred cccCCeEEeeeEEEEEEC--C---eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHH
Q psy15197 232 ALNRGITMDVGQSQFETK--T---KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLV 306 (902)
Q Consensus 232 e~~rGiTid~~~~~~~~~--~---~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l 306 (902)
|+++|+|++.....+.|. + +.++|||||||.+|...+..+++.||++|||+|++++. ..++..++..+
T Consensus 46 ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~-------~~qt~~~~~~~ 118 (595)
T TIGR01393 46 ERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGI-------EAQTLANVYLA 118 (595)
T ss_pred HHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCC-------CHhHHHHHHHH
Confidence 389999999988888774 2 78999999999999999999999999999999999983 35777777666
Q ss_pred HHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCcccHHHH
Q psy15197 307 RSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDV 386 (902)
Q Consensus 307 ~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~ 386 (902)
...+++ +|+|+||+|+.+.+. .++.+++...+ ++. ..+++++||++|.|+.+ |++.
T Consensus 119 ~~~~ip-iIiViNKiDl~~~~~---~~~~~el~~~l---g~~--~~~vi~vSAktG~GI~~---------------Lle~ 174 (595)
T TIGR01393 119 LENDLE-IIPVINKIDLPSADP---ERVKKEIEEVI---GLD--ASEAILASAKTGIGIEE---------------ILEA 174 (595)
T ss_pred HHcCCC-EEEEEECcCCCccCH---HHHHHHHHHHh---CCC--cceEEEeeccCCCCHHH---------------HHHH
Confidence 667776 779999999975332 22223333322 321 12579999999999998 7776
Q ss_pred H-HhcCCCCCCCCCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCcEEEEEEEEEce---EeeeeeccCCe
Q psy15197 387 I-DNFKTPSRPLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYVDE---MSVSAAYAGDN 462 (902)
Q Consensus 387 L-~~l~~p~~~~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~~~---~~v~~a~aGdi 462 (902)
| +.+++|....++|+++.|++++.+++.|+|++|||++|+|+.||.|.+.+++...+|.+|.+.. .+++++.|||+
T Consensus 175 I~~~lp~p~~~~~~pl~~~V~~~~~d~~~G~v~~~rV~sG~lk~Gd~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdI 254 (595)
T TIGR01393 175 IVKRVPPPKGDPDAPLKALIFDSHYDNYRGVVALVRVFEGTIKPGDKIRFMSTGKEYEVDEVGVFTPKLTKTDELSAGEV 254 (595)
T ss_pred HHHhCCCCCCCCCCCeEEEEEEEEEeCCCcEEEEEEEECCEEecCCEEEEecCCCeeEEeEEEEecCCceECCEEcCCCE
Confidence 6 4577777777899999999999999999999999999999999999999999888999998644 78899999997
Q ss_pred EEEeeeccccccceeeccccCCCCC
Q psy15197 463 VSVTLLNYDQQNVSVGFLLSELSHP 487 (902)
Q Consensus 463 v~I~l~~~~~~~i~kG~vL~~~~~~ 487 (902)
+.+.......+++++|++|+...++
T Consensus 255 g~i~~~~~~~~~~~~Gdtl~~~~~~ 279 (595)
T TIGR01393 255 GYIIAGIKDVSDVRVGDTITHVKNP 279 (595)
T ss_pred EEEeccccccCccCCCCEEECCCCc
Confidence 6664322234789999999877654
No 49
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=100.00 E-value=1.2e-32 Score=290.20 Aligned_cols=216 Identities=60% Similarity=1.034 Sum_probs=187.5
Q ss_pred EEEEEecCCCChhHHHhHHHHhccccchhhhccchhhhhhcccccceeeeeccccCcccccCCccccCCCCCCCCccccc
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYLMGRVSAREIHKHETESKKLGKQSFMYAWILDETGEESSCEIPVDTTSAGNPVDSETII 107 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 107 (902)
||+|+||+|||||||+++||+.+|.++++...+.++++.+.|+.+|+|++++|..++|
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E---------------------- 58 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEE---------------------- 58 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHH----------------------
Confidence 6999999999999999999999999999887787778888888888888777777754
Q ss_pred cccCCCCCCCCcchhhhhccccccCCCCccchhcccCCCCccccccchhhhccCCCCCCCCCcccccccccccccCCCCc
Q psy15197 108 KTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFEDRETIIKTIGPHGPVPLEDTYYLDKLFHFSGERNP 187 (902)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (902)
T Consensus 59 -------------------------------------------------------------------------------- 58 (219)
T cd01883 59 -------------------------------------------------------------------------------- 58 (219)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCCccccceecccCCccchhhhhhhhhcccccccccccccCCeEEeeeEEEEEECCeEEEEEeCCCccchHHH
Q psy15197 188 ERVVHAKGGGAFGYFEVRKLPAGVVKIEFACLVMRIVPLEGIASALNRGITMDVGQSQFETKTKYITLLDAPGHKDFIPN 267 (902)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~e~~rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~~ 267 (902)
++||+|++.....++++++.++|||||||.+|...
T Consensus 59 ---------------------------------------------~~rg~T~d~~~~~~~~~~~~i~liDtpG~~~~~~~ 93 (219)
T cd01883 59 ---------------------------------------------RERGVTIDVGLAKFETEKYRFTILDAPGHRDFVPN 93 (219)
T ss_pred ---------------------------------------------hhCccCeecceEEEeeCCeEEEEEECCChHHHHHH
Confidence 67999999999999999999999999999999999
Q ss_pred HHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCC--chHHHHHHHHHHHHHhhhhc
Q psy15197 268 MITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVS--WSQDRFQEIVTKLGAFLKQA 345 (902)
Q Consensus 268 ~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~--~~~~~~~~i~~~l~~~l~~~ 345 (902)
+..++..+|++|+|||++++.++.+|....++.+++..+...+++++|||+||+|+.. ++...+.++.+++...++..
T Consensus 94 ~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~ 173 (219)
T cd01883 94 MITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKV 173 (219)
T ss_pred HHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccccccHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999998755555556678888888787778788989999999973 44566778888888888888
Q ss_pred CCCCCCceEecCCCccCCCCCCCCCCcccccccCcccHHHHHHhcCCC
Q psy15197 346 GFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNFKTP 393 (902)
Q Consensus 346 ~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L~~l~~p 393 (902)
++....++++++||++|.||.+++. .+.||+|++|++.|+.+.++
T Consensus 174 ~~~~~~~~ii~iSA~tg~gi~~~~~---~~~w~~g~~l~~~l~~~~~~ 218 (219)
T cd01883 174 GYNPKDVPFIPISGLTGDNLIEKSE---NMPWYKGPTLLEALDSLEPP 218 (219)
T ss_pred CCCcCCceEEEeecCcCCCCCcCCC---CCCCccCCcHHHHHhCCCCC
Confidence 7765678999999999999998654 78999999999999988664
No 50
>KOG0463|consensus
Probab=100.00 E-value=5.7e-33 Score=295.20 Aligned_cols=266 Identities=27% Similarity=0.407 Sum_probs=222.8
Q ss_pred CCeEEEEEeCCCccchHHHHHHHHH--HcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCc
Q psy15197 249 KTKYITLLDAPGHKDFIPNMITGAT--QADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSW 326 (902)
Q Consensus 249 ~~~~i~lIDTPG~~df~~~~~~~l~--~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~ 326 (902)
..+.|+|||.+||++|++.+..++. ..|..+|+|.++.|+ ...+++|+.++..+.+|.+ ||++|+|++..
T Consensus 217 saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI-------iGmTKEHLgLALaL~VPVf-vVVTKIDMCPA 288 (641)
T KOG0463|consen 217 SAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI-------IGMTKEHLGLALALHVPVF-VVVTKIDMCPA 288 (641)
T ss_pred cceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccc-------eeccHHhhhhhhhhcCcEE-EEEEeeccCcH
Confidence 4578999999999999999999997 489999999999994 4689999999999998855 99999999863
Q ss_pred hHHHHHHHHHHHHHhhhhcCCC---------------------CCCceEecCCCccCCCCCCCCCCcccccccCcccHHH
Q psy15197 327 SQDRFQEIVTKLGAFLKQAGFR---------------------DSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLD 385 (902)
Q Consensus 327 ~~~~~~~i~~~l~~~l~~~~~~---------------------~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle 385 (902)
..+++..+.+..+++..|+. ...+||+.+|..+|+|+.- |..
T Consensus 289 --NiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~L---------------Lkm 351 (641)
T KOG0463|consen 289 --NILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPL---------------LKM 351 (641)
T ss_pred --HHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHH---------------HHH
Confidence 34666677777777775543 2346889999999999874 444
Q ss_pred HHHhcCCCCC--CCCCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCc----EEEEEEEEEceEeeeeecc
Q psy15197 386 VIDNFKTPSR--PLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNE----VTTVKAVYVDEMSVSAAYA 459 (902)
Q Consensus 386 ~L~~l~~p~~--~~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~----~~~V~sI~~~~~~v~~a~a 459 (902)
.|. +.++.. ..+.|..|+|+++|.++|+|+|+.|...+|+|+.+|.+.++|+.. ...|++|+..+.+|.++..
T Consensus 352 FLN-lls~R~~~~E~~PAeFQIDD~Y~VpGVGTvvSGT~L~GtIrLND~LlLGPd~~G~F~pI~iKSIHRKRMpV~~Vrc 430 (641)
T KOG0463|consen 352 FLN-LLSLRRQLNENDPAEFQIDDIYWVPGVGTVVSGTLLSGTIRLNDILLLGPDSNGDFMPIPIKSIHRKRMPVGIVRC 430 (641)
T ss_pred HHh-hcCcccccccCCCcceeecceEecCCcceEeecceeeeeEEeccEEEecCCCCCCeeeeehhhhhhccccceEEec
Confidence 444 333322 346789999999999999999999999999999999999999753 5678999999999999999
Q ss_pred CCeEEEeeeccccccceeeccccCCCCCCCCcccceeeeeeecccCCcccccc-eecchhhhhhhheecc------cCce
Q psy15197 460 GDNVSVTLLNYDQQNVSVGFLLSELSHPCPVSSKFEARIVVFNITTPITIGYP-VTHDITHLTKAAIFSE------IGKQ 532 (902)
Q Consensus 460 Gdiv~I~l~~~~~~~i~kG~vL~~~~~~~~~~~~F~a~irvvHakg~ga~G~f-v~~~is~~~~A~if~~------~gk~ 532 (902)
|+...++++.+..+++++||++.++.-.+.++|.|+++|.++|++.++...|. ..|+.+..+.|.+++. .|.+
T Consensus 431 GQtASFALKKIkr~~vRKGMVmVsp~lkPqAsweFEaEILVLHHPTTIsprYQAMvHcGSiRQTAtivsM~kdcLRTGDk 510 (641)
T KOG0463|consen 431 GQTASFALKKIKRKDVRKGMVMVSPKLKPQASWEFEAEILVLHHPTTISPRYQAMVHCGSIRQTATIVSMGKDCLRTGDK 510 (641)
T ss_pred cchhhhHhhhcchhhhhcceEEecCCCCcceeeEEeeeEEEEecCCccCcchhheeeeccccceeeeeecChhhhhcCCc
Confidence 99999999999999999999999998888899999999999999999999999 8898888877877753 2334
Q ss_pred eeEEEEEe
Q psy15197 533 TPVAARFS 540 (902)
Q Consensus 533 tpv~vRFS 540 (902)
..|-.||=
T Consensus 511 a~V~FrFI 518 (641)
T KOG0463|consen 511 AKVQFRFI 518 (641)
T ss_pred ceEEEEEe
Confidence 44545553
No 51
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.97 E-value=3.1e-31 Score=277.30 Aligned_cols=207 Identities=37% Similarity=0.646 Sum_probs=175.0
Q ss_pred EEEEEecCCCChhHHHhHHHHhccccchhhhccchhhhhhcccccceeeeeccccCcccccCCccccCCCCCCCCccccc
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYLMGRVSAREIHKHETESKKLGKQSFMYAWILDETGEESSCEIPVDTTSAGNPVDSETII 107 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 107 (902)
||+||||+|||||||+++||+.+|.|+.+.+++.+.++...+++++.+++++|..++|
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e---------------------- 58 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAE---------------------- 58 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhh----------------------
Confidence 6899999999999999999999999998877777666666677766666666665544
Q ss_pred cccCCCCCCCCcchhhhhccccccCCCCccchhcccCCCCccccccchhhhccCCCCCCCCCcccccccccccccCCCCc
Q psy15197 108 KTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFEDRETIIKTIGPHGPVPLEDTYYLDKLFHFSGERNP 187 (902)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (902)
T Consensus 59 -------------------------------------------------------------------------------- 58 (208)
T cd04166 59 -------------------------------------------------------------------------------- 58 (208)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCCccccceecccCCccchhhhhhhhhcccccccccccccCCeEEeeeEEEEEECCeEEEEEeCCCccchHHH
Q psy15197 188 ERVVHAKGGGAFGYFEVRKLPAGVVKIEFACLVMRIVPLEGIASALNRGITMDVGQSQFETKTKYITLLDAPGHKDFIPN 267 (902)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~e~~rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~~ 267 (902)
++||+|++.....+++++..++|||||||.+|...
T Consensus 59 ---------------------------------------------~~rg~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~ 93 (208)
T cd04166 59 ---------------------------------------------REQGITIDVAYRYFSTPKRKFIIADTPGHEQYTRN 93 (208)
T ss_pred ---------------------------------------------hcCCcCeecceeEEecCCceEEEEECCcHHHHHHH
Confidence 67999999999999999999999999999999999
Q ss_pred HHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCC
Q psy15197 268 MITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGF 347 (902)
Q Consensus 268 ~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~ 347 (902)
+..++..+|++|+|+|++.+.. .++..++.++...+.+++|+|+||+|+.+++.+.+..+..++..+++.+++
T Consensus 94 ~~~~~~~ad~~llVvD~~~~~~-------~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~ 166 (208)
T cd04166 94 MVTGASTADLAILLVDARKGVL-------EQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYLAFAAKLGI 166 (208)
T ss_pred HHHhhhhCCEEEEEEECCCCcc-------HhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999998843 467777777777777778789999999865555566777778777777775
Q ss_pred CCCCceEecCCCccCCCCCCCCCCcccccccCcccHHHHHHhcCCC
Q psy15197 348 RDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNFKTP 393 (902)
Q Consensus 348 ~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L~~l~~p 393 (902)
. ..+++++||++|.|+.+.+. .++||+|++|+++|+.++|+
T Consensus 167 ~--~~~ii~iSA~~g~ni~~~~~---~~~w~~g~~~~~~~~~~~~~ 207 (208)
T cd04166 167 E--DITFIPISALDGDNVVSRSE---NMPWYSGPTLLEHLETVPIA 207 (208)
T ss_pred C--CceEEEEeCCCCCCCccCCC---CCCCCCCCcHHHHHhcCCCC
Confidence 3 35799999999999998654 69999999999999999876
No 52
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.97 E-value=3.8e-30 Score=314.27 Aligned_cols=242 Identities=25% Similarity=0.309 Sum_probs=178.5
Q ss_pred ccCCeEEeeeEEEEEE----CCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHH
Q psy15197 233 LNRGITMDVGQSQFET----KTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRS 308 (902)
Q Consensus 233 ~~rGiTid~~~~~~~~----~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~ 308 (902)
++||+|++.+..++.| .++.++|||||||.+|...+..+++.+|++|+|||+..|+ ..+++.++..+..
T Consensus 65 ~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~-------~~~t~~~~~~~~~ 137 (731)
T PRK07560 65 QARGITIKAANVSMVHEYEGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGV-------MPQTETVLRQALR 137 (731)
T ss_pred HHhhhhhhccceEEEEEecCCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCC-------CccHHHHHHHHHH
Confidence 8899999988877766 4789999999999999999999999999999999999984 4689999988888
Q ss_pred hCCCeEEEEEecCCCCCc--------hHHHHHHHHHHHHHhhhhcC---------CCCCCceEecCCCccCCCCCCCCCC
Q psy15197 309 LGVNQLGVVINKLDTVSW--------SQDRFQEIVTKLGAFLKQAG---------FRDSDIEYVPCSGLTGENLTTPSQV 371 (902)
Q Consensus 309 ~~i~~iIVviNKiDl~~~--------~~~~~~~i~~~l~~~l~~~~---------~~~~~~~ii~iSA~~G~gI~~~~~~ 371 (902)
.++++ |+++||||+... ...++.++.+++..++..+. +...+..+++.||+.+.++......
T Consensus 138 ~~~~~-iv~iNK~D~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~~~~~~ 216 (731)
T PRK07560 138 ERVKP-VLFINKVDRLIKELKLTPQEMQQRLLKIIKDVNKLIKGMAPEEFKEKWKVDVEDGTVAFGSALYNWAISVPMMQ 216 (731)
T ss_pred cCCCe-EEEEECchhhcccccCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcceeecCCCCcEeeeecccccceeHHHHH
Confidence 88875 699999997521 12334444555555544332 1122234678899988877510000
Q ss_pred ------c------------ccccccC-cccHHHHHHh-cCCCCC-------------------------CCCCCceEEEe
Q psy15197 372 ------P------------ALTSWYS-GPCLLDVIDN-FKTPSR-------------------------PLTKPLRMSVS 406 (902)
Q Consensus 372 ------~------------~~~~w~~-g~~Lle~L~~-l~~p~~-------------------------~~~~pl~~~I~ 406 (902)
. .+..|+. -..|++.|.. +|.|.. ..+.|+.+.|+
T Consensus 217 ~~~~~~~~l~e~~~~~~~~~l~~~~Pv~~~Lld~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~Vf 296 (731)
T PRK07560 217 KTGIKFKDIIDYYEKGKQKELAEKAPLHEVVLDMVVKHLPNPIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVT 296 (731)
T ss_pred HhCCCHHHHHHHHhcCCHHHHHhhccchhHHHHHHHHhCCChhhhhhhcccccccCCCCccccceeeccCCCCCEEEEEE
Confidence 0 0000100 0125565544 555521 22458999999
Q ss_pred eEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCcEEEEEEEEE----ceEeeeeeccCCeEEEeeeccccccceeecccc
Q psy15197 407 DIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYV----DEMSVSAAYAGDNVSVTLLNYDQQNVSVGFLLS 482 (902)
Q Consensus 407 ~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~----~~~~v~~a~aGdiv~I~l~~~~~~~i~kG~vL~ 482 (902)
+++.+++.|+++++||++|+|++||.|++.+.+...+|..|+. +..+++++.|||+++|.+. +++.+|++|+
T Consensus 297 K~~~d~~~G~va~~RV~sGtL~~Gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~AGdIv~i~gl----~~~~~GdtL~ 372 (731)
T PRK07560 297 DIIVDPHAGEVATGRVFSGTLRKGQEVYLVGAKKKNRVQQVGIYMGPEREEVEEIPAGNIAAVTGL----KDARAGETVV 372 (731)
T ss_pred eeEEcCCCCeEEEEEEEEeEEcCCCEEEEcCCCCceEeheehhhhcCCCceeeeECCCCEEEEEcc----cccccCCEEe
Confidence 9999999999999999999999999999998887788888875 3678999999999999764 5678999997
Q ss_pred CCCC
Q psy15197 483 ELSH 486 (902)
Q Consensus 483 ~~~~ 486 (902)
....
T Consensus 373 ~~~~ 376 (731)
T PRK07560 373 SVED 376 (731)
T ss_pred CCCc
Confidence 6543
No 53
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=2.8e-30 Score=307.31 Aligned_cols=236 Identities=24% Similarity=0.308 Sum_probs=188.6
Q ss_pred hhhhcccccccccccccCCeEEeeeEEEEEECC-eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCc
Q psy15197 218 CLVMRIVPLEGIASALNRGITMDVGQSQFETKT-KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESG 296 (902)
Q Consensus 218 ~~~~d~~~~~~~~~e~~rGiTid~~~~~~~~~~-~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~ 296 (902)
..+||++++| ++|||||.+...++.|++ +.|+|||||||.||..++.++++.+|++|+|||+.+| +.
T Consensus 47 ~~~~D~~e~E-----qeRGITI~saa~s~~~~~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveG-------V~ 114 (697)
T COG0480 47 AATMDWMEQE-----QERGITITSAATTLFWKGDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEG-------VE 114 (697)
T ss_pred CccCCCcHHH-----HhcCCEEeeeeeEEEEcCceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCC-------ee
Confidence 4578888888 999999999999999996 9999999999999999999999999999999999999 45
Q ss_pred hhhHHHHHHHHHhCCCeEEEEEecCCCCCchH------------------------------------------------
Q psy15197 297 GQTREHALLVRSLGVNQLGVVINKLDTVSWSQ------------------------------------------------ 328 (902)
Q Consensus 297 ~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~------------------------------------------------ 328 (902)
.|++..++.+...++|++ +++||||....+.
T Consensus 115 ~QTEtv~rqa~~~~vp~i-~fiNKmDR~~a~~~~~~~~l~~~l~~~~~~v~~pIg~~~~f~g~idl~~~~~~~~~~~~~~ 193 (697)
T COG0480 115 PQTETVWRQADKYGVPRI-LFVNKMDRLGADFYLVVEQLKERLGANPVPVQLPIGAEEEFEGVIDLVEMKAVAFGDGAKY 193 (697)
T ss_pred ecHHHHHHHHhhcCCCeE-EEEECccccccChhhhHHHHHHHhCCCceeeeccccCccccCceeEhhhcCeEEEcCCccc
Confidence 799999999999999966 9999999221110
Q ss_pred ------HHHHHHH----------------HHHHHhhhhcC--------------CCCCCceEecCCCccCCCCCCCCCCc
Q psy15197 329 ------DRFQEIV----------------TKLGAFLKQAG--------------FRDSDIEYVPCSGLTGENLTTPSQVP 372 (902)
Q Consensus 329 ------~~~~~i~----------------~~l~~~l~~~~--------------~~~~~~~ii~iSA~~G~gI~~~~~~~ 372 (902)
.....+. +.+..++.... ......|+++.||.++.|+..
T Consensus 194 ~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g~e~~~~~i~~~i~~~~~~~~~~pvl~gsa~kn~gv~~----- 268 (697)
T COG0480 194 EWIEIPADLKEIAEEAREKLLEALAEFDEELMEKYLEGEEPTEEEIKKALRKGTIAGKIVPVLCGSAFKNKGVQP----- 268 (697)
T ss_pred ceeeCCHHHHhHHHHHHHHHHHHHhhcCHHHHHHHhcCCCccHHHHHHHHHHhhhccceeeEEeeecccCCcHHH-----
Confidence 0011110 11111121100 012246888899998888877
Q ss_pred ccccccCcccHHHHHHh-cCCCCC--------------------CCCCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCC
Q psy15197 373 ALTSWYSGPCLLDVIDN-FKTPSR--------------------PLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGE 431 (902)
Q Consensus 373 ~~~~w~~g~~Lle~L~~-l~~p~~--------------------~~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd 431 (902)
|++++.. +|.|.. ..+.|+.+.++++..++..|.+.++||+||+|+.|+
T Consensus 269 ----------lLdav~~~lPsP~e~~~~~g~~~~~~~~~~~~~~~~e~p~~a~vfKi~~d~~~g~l~~~RvysGtl~~G~ 338 (697)
T COG0480 269 ----------LLDAVVDYLPSPLDVPPIKGDLDDEIEKAVLRKASDEGPLSALVFKIMTDPFVGKLTFVRVYSGTLKSGS 338 (697)
T ss_pred ----------HHHHHHHHCCChhhcccccccCCccccchhcccCCCCCceEEEEEEeEecCCCCeEEEEEEeccEEcCCC
Confidence 7776654 444411 226899999999999999999999999999999999
Q ss_pred EEEEccCCcEEEEEEEEE----ceEeeeeeccCCeEEEeeeccccccceeeccccCCC
Q psy15197 432 KVMVQPQNEVTTVKAVYV----DEMSVSAAYAGDNVSVTLLNYDQQNVSVGFLLSELS 485 (902)
Q Consensus 432 ~v~l~p~~~~~~V~sI~~----~~~~v~~a~aGdiv~I~l~~~~~~~i~kG~vL~~~~ 485 (902)
.|++...+...+|..|.. .+.+++++.||+++++.+. ++...|++|++..
T Consensus 339 ~v~n~~~~~~erv~~l~~~~~~~~~~v~~~~AG~I~a~~Gl----~~~~tGdTl~~~~ 392 (697)
T COG0480 339 EVLNSTKGKKERVGRLLLMHGNEREEVDEVPAGDIVALVGL----KDATTGDTLCDEN 392 (697)
T ss_pred EEEeCCCCccEEEEEEEEccCCceeecccccCccEEEEEcc----cccccCCeeecCC
Confidence 999998888899998875 5678999999999999997 7779999999776
No 54
>PRK00007 elongation factor G; Reviewed
Probab=99.97 E-value=5.3e-30 Score=311.27 Aligned_cols=232 Identities=21% Similarity=0.241 Sum_probs=180.7
Q ss_pred hhhcccccccccccccCCeEEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchh
Q psy15197 219 LVMRIVPLEGIASALNRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQ 298 (902)
Q Consensus 219 ~~~d~~~~~~~~~e~~rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~q 298 (902)
.+||++++| ++||+|++.....+.|+++.++|||||||.+|..++..++..+|++|+|||+..| +..|
T Consensus 48 ~~~D~~~~E-----~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g-------~~~q 115 (693)
T PRK00007 48 ATMDWMEQE-----QERGITITSAATTCFWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGG-------VEPQ 115 (693)
T ss_pred ccCCCCHHH-----HhCCCCEeccEEEEEECCeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCC-------cchh
Confidence 456666655 9999999999999999999999999999999999999999999999999999998 4479
Q ss_pred hHHHHHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhh----------------------------------
Q psy15197 299 TREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQ---------------------------------- 344 (902)
Q Consensus 299 t~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~---------------------------------- 344 (902)
++.++..+...++|. |+++||||+.+.+. .+..+++...+..
T Consensus 116 t~~~~~~~~~~~~p~-iv~vNK~D~~~~~~---~~~~~~i~~~l~~~~~~~~ipisa~~~f~g~~d~~~~~~~~~~~~~~ 191 (693)
T PRK00007 116 SETVWRQADKYKVPR-IAFVNKMDRTGADF---YRVVEQIKDRLGANPVPIQLPIGAEDDFKGVVDLVKMKAIIWNEADL 191 (693)
T ss_pred hHHHHHHHHHcCCCE-EEEEECCCCCCCCH---HHHHHHHHHHhCCCeeeEEecCccCCcceEEEEcceeeeeecccCCC
Confidence 999999999999885 59999999875332 1122222111111
Q ss_pred --------------------------------------------------------cCCCCCCceEecCCCccCCCCCCC
Q psy15197 345 --------------------------------------------------------AGFRDSDIEYVPCSGLTGENLTTP 368 (902)
Q Consensus 345 --------------------------------------------------------~~~~~~~~~ii~iSA~~G~gI~~~ 368 (902)
.-....-+|+++.||+++.|+..
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~- 270 (693)
T PRK00007 192 GATFEYEEIPADLKDKAEEYREKLIEAAAEADEELMEKYLEGEELTEEEIKAALRKATIANEIVPVLCGSAFKNKGVQP- 270 (693)
T ss_pred CCcceEccCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHhCcCCCCHHHHHHHHHHHHhcCcEEEEEecccccCcCHHH-
Confidence 00011235667777777777766
Q ss_pred CCCcccccccCcccHHHHHHh-cCCCCC--------------------CCCCCceEEEeeEEeeCCCeEEEEEEEEeeEe
Q psy15197 369 SQVPALTSWYSGPCLLDVIDN-FKTPSR--------------------PLTKPLRMSVSDIYKSTGSGYCIAGRVETGVI 427 (902)
Q Consensus 369 ~~~~~~~~w~~g~~Lle~L~~-l~~p~~--------------------~~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~L 427 (902)
|++.|.. +|.|.. ..+.|+.+.|+++..+++.|+++++||++|+|
T Consensus 271 --------------LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~~~d~~~G~ia~~RV~sGtl 336 (693)
T PRK00007 271 --------------LLDAVVDYLPSPLDVPAIKGILPDGEEEEVERKASDDEPFSALAFKIMTDPFVGKLTFFRVYSGVL 336 (693)
T ss_pred --------------HHHHHHHHCCChhhcccccccCCCccccceeecCCCCCCeEEEEEEeeecCCCCcEEEEEEeeeEE
Confidence 7776654 555431 12568999999999999999999999999999
Q ss_pred eCCCEEEEccCCcEEEEEEEEE----ceEeeeeeccCCeEEEeeeccccccceeeccccCCC
Q psy15197 428 LAGEKVMVQPQNEVTTVKAVYV----DEMSVSAAYAGDNVSVTLLNYDQQNVSVGFLLSELS 485 (902)
Q Consensus 428 k~Gd~v~l~p~~~~~~V~sI~~----~~~~v~~a~aGdiv~I~l~~~~~~~i~kG~vL~~~~ 485 (902)
+.||.|+....+...+|.+|.. ...+++++.|||+++|.+. +++++|++|+...
T Consensus 337 ~~g~~v~~~~~~~~eki~~l~~~~g~~~~~v~~~~aGdI~~i~gl----~~~~~GdtL~~~~ 394 (693)
T PRK00007 337 ESGSYVLNSTKGKKERIGRILQMHANKREEIKEVRAGDIAAAVGL----KDTTTGDTLCDEK 394 (693)
T ss_pred cCCCEEEeCCCCceeEeceeEEeccCCcccccccCCCcEEEEeCC----ccCCcCCEeeCCC
Confidence 9999999776666677877765 4678999999999999775 5678999997654
No 55
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.97 E-value=2.8e-29 Score=294.32 Aligned_cols=234 Identities=25% Similarity=0.277 Sum_probs=183.1
Q ss_pred hhcccccccccccccCCeEEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhh
Q psy15197 220 VMRIVPLEGIASALNRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQT 299 (902)
Q Consensus 220 ~~d~~~~~~~~~e~~rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt 299 (902)
++|++++| ++||+|+......++++++.++|||||||.+|...+..+++.+|++|+|||++++ +..++
T Consensus 53 ~~D~~~~E-----~~rgiSi~~~~~~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~g-------v~~~t 120 (526)
T PRK00741 53 TSDWMEME-----KQRGISVTSSVMQFPYRDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKG-------VEPQT 120 (526)
T ss_pred cCCCcHHH-----HhhCCceeeeeEEEEECCEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCC-------CCHHH
Confidence 35666555 9999999999999999999999999999999999999999999999999999988 34688
Q ss_pred HHHHHHHHHhCCCeEEEEEecCCCCCchHH-HHHHHHHHHH---------------------------------------
Q psy15197 300 REHALLVRSLGVNQLGVVINKLDTVSWSQD-RFQEIVTKLG--------------------------------------- 339 (902)
Q Consensus 300 ~~~l~~l~~~~i~~iIVviNKiDl~~~~~~-~~~~i~~~l~--------------------------------------- 339 (902)
+.++..+...++| +|+++||+|+...+.. .+.++.+.+.
T Consensus 121 ~~l~~~~~~~~iP-iiv~iNK~D~~~a~~~~~l~~i~~~l~~~~~p~~~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~~~ 199 (526)
T PRK00741 121 RKLMEVCRLRDTP-IFTFINKLDRDGREPLELLDEIEEVLGIACAPITWPIGMGKRFKGVYDLYNDEVELYQPGEGHTIQ 199 (526)
T ss_pred HHHHHHHHhcCCC-EEEEEECCcccccCHHHHHHHHHHHhCCCCeeEEeccccCCceeEEEEeecceeeecccCCCCcce
Confidence 8888888888877 6699999997653321 1122211110
Q ss_pred --------------Hhhhh---------c--------------CCCCCCceEecCCCccCCCCCCCCCCcccccccCccc
Q psy15197 340 --------------AFLKQ---------A--------------GFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPC 382 (902)
Q Consensus 340 --------------~~l~~---------~--------------~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~ 382 (902)
.++.. + -.....+|+++.||+++.|+..
T Consensus 200 ~~e~~~~~dd~lle~~l~~~~~~~l~~~lel~~~~~~~~~~~~~~~~~~~PV~~GSA~~n~Gv~~--------------- 264 (526)
T PRK00741 200 EVEIIKGLDNPELDELLGEDLAEQLREELELVQGASNEFDLEAFLAGELTPVFFGSALNNFGVQE--------------- 264 (526)
T ss_pred eeeeccCCCHHHHHHHhcccHHHHHHHHHHhhhhcccchhHHHHhcCCeEEEEEeecccCcCHHH---------------
Confidence 00000 0 0012347899999999999998
Q ss_pred HHHHHHhc-CCCCCC---------CCCCceEEEeeEE---eeCCCeEEEEEEEEeeEeeCCCEEEEccCCcEEEEEEEEE
Q psy15197 383 LLDVIDNF-KTPSRP---------LTKPLRMSVSDIY---KSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYV 449 (902)
Q Consensus 383 Lle~L~~l-~~p~~~---------~~~pl~~~I~~i~---~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~ 449 (902)
|++.|..+ |+|... .+.++...|+++. ..+++|++++.||+||+|+.|+.|+....+...++.++..
T Consensus 265 LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~VFK~~~~m~~~~~grlafvRV~sG~l~~g~~v~~~~~~k~~ri~~~~~ 344 (526)
T PRK00741 265 FLDAFVEWAPAPQPRQTDEREVEPTEEKFSGFVFKIQANMDPKHRDRIAFVRVCSGKFEKGMKVRHVRTGKDVRISNALT 344 (526)
T ss_pred HHHHHHHHCCCCCcccccceeecCCCCceEEEEEEEEecCCCCcCceEEEEEEeccEECCCCEEEeccCCceEEecceEE
Confidence 88887665 444221 2456899999997 4579999999999999999999999998888888887654
Q ss_pred ----ceEeeeeeccCCeEEEeeeccccccceeeccccCCC
Q psy15197 450 ----DEMSVSAAYAGDNVSVTLLNYDQQNVSVGFLLSELS 485 (902)
Q Consensus 450 ----~~~~v~~a~aGdiv~I~l~~~~~~~i~kG~vL~~~~ 485 (902)
.+.++++|.|||+++|... ++++.|++|+...
T Consensus 345 ~~g~~~~~v~~a~aGDIv~v~~l----~~~~~GDTL~~~~ 380 (526)
T PRK00741 345 FMAQDREHVEEAYAGDIIGLHNH----GTIQIGDTFTQGE 380 (526)
T ss_pred EecCCceECceeCCCCEEEEECC----CCCccCCCccCCC
Confidence 6689999999999999875 7899999998654
No 56
>PRK12739 elongation factor G; Reviewed
Probab=99.97 E-value=1.3e-29 Score=307.94 Aligned_cols=232 Identities=22% Similarity=0.250 Sum_probs=182.1
Q ss_pred hhhcccccccccccccCCeEEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchh
Q psy15197 219 LVMRIVPLEGIASALNRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQ 298 (902)
Q Consensus 219 ~~~d~~~~~~~~~e~~rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~q 298 (902)
.+||++++| ++||+|++.....++|++++++|||||||.+|..++..+++.+|++|+|||+.+| ...+
T Consensus 46 ~~~D~~~~E-----~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g-------~~~q 113 (691)
T PRK12739 46 ATMDWMEQE-----QERGITITSAATTCFWKGHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSG-------VEPQ 113 (691)
T ss_pred cccCCChhH-----hhcCCCccceeEEEEECCEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCC-------CCHH
Confidence 345666555 8999999999999999999999999999999999999999999999999999998 4478
Q ss_pred hHHHHHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhh----------------------------------
Q psy15197 299 TREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQ---------------------------------- 344 (902)
Q Consensus 299 t~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~---------------------------------- 344 (902)
++.++..+...++|. |+++||||+...+. ..+.+++...+..
T Consensus 114 t~~i~~~~~~~~~p~-iv~iNK~D~~~~~~---~~~~~~i~~~l~~~~~~~~iPis~~~~f~g~vd~~~~~~~~~~~~~~ 189 (691)
T PRK12739 114 SETVWRQADKYGVPR-IVFVNKMDRIGADF---FRSVEQIKDRLGANAVPIQLPIGAEDDFKGVIDLIKMKAIIWDDETL 189 (691)
T ss_pred HHHHHHHHHHcCCCE-EEEEECCCCCCCCH---HHHHHHHHHHhCCCceeEEecccccccceEEEEcchhhhhhccCCCC
Confidence 999999998889875 59999999875322 1122222211111
Q ss_pred ------------------------------------------cC--------------CCCCCceEecCCCccCCCCCCC
Q psy15197 345 ------------------------------------------AG--------------FRDSDIEYVPCSGLTGENLTTP 368 (902)
Q Consensus 345 ------------------------------------------~~--------------~~~~~~~ii~iSA~~G~gI~~~ 368 (902)
.. ....-+|+++.||+++.|+..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yl~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~- 268 (691)
T PRK12739 190 GAKYEEEDIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEGEEITEEEIKAAIRKATINMEFFPVLCGSAFKNKGVQP- 268 (691)
T ss_pred CCeeEEcCCCHHHHHHHHHHHHHHHHhhhhcCHHHHHHHhccCCCCHHHHHHHHHHHHHcCCEEEEEeccccCCccHHH-
Confidence 00 011235778888888888877
Q ss_pred CCCcccccccCcccHHHHHHh-cCCCCC-------------------CCCCCceEEEeeEEeeCCCeEEEEEEEEeeEee
Q psy15197 369 SQVPALTSWYSGPCLLDVIDN-FKTPSR-------------------PLTKPLRMSVSDIYKSTGSGYCIAGRVETGVIL 428 (902)
Q Consensus 369 ~~~~~~~~w~~g~~Lle~L~~-l~~p~~-------------------~~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk 428 (902)
|++.|.. +|.|.. ..+.|+.+.|++++.+++.|+++++||++|+|+
T Consensus 269 --------------LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~~~d~~~G~i~~~RV~sGtL~ 334 (691)
T PRK12739 269 --------------LLDAVVDYLPSPLDVPAIKGINPDTEEEIERPASDDEPFAALAFKIMTDPFVGRLTFFRVYSGVLE 334 (691)
T ss_pred --------------HHHHHHHHCCChhhccccccccCCCCcceeeccCCCCCeEEEEEEeeeCCCCCeEEEEEEeeeEEc
Confidence 7777755 444421 235689999999999999999999999999999
Q ss_pred CCCEEEEccCCcEEEEEEEEE----ceEeeeeeccCCeEEEeeeccccccceeeccccCCC
Q psy15197 429 AGEKVMVQPQNEVTTVKAVYV----DEMSVSAAYAGDNVSVTLLNYDQQNVSVGFLLSELS 485 (902)
Q Consensus 429 ~Gd~v~l~p~~~~~~V~sI~~----~~~~v~~a~aGdiv~I~l~~~~~~~i~kG~vL~~~~ 485 (902)
.||.|+....+...+|.+|.. ...+++++.|||+++|.+. ++++.|++|+...
T Consensus 335 ~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl----~~~~~gdtl~~~~ 391 (691)
T PRK12739 335 SGSYVLNTTKGKKERIGRLLQMHANKREEIKEVYAGDIAAAVGL----KDTTTGDTLCDEK 391 (691)
T ss_pred CCCEEEeCCCCceEEecceEEEecCCcccccccCCCCEEEEeCC----CcccCCCEEeCCC
Confidence 999998877777777877764 4678999999999999875 5678999997654
No 57
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.97 E-value=7.3e-29 Score=290.82 Aligned_cols=234 Identities=21% Similarity=0.251 Sum_probs=181.1
Q ss_pred hhcccccccccccccCCeEEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhh
Q psy15197 220 VMRIVPLEGIASALNRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQT 299 (902)
Q Consensus 220 ~~d~~~~~~~~~e~~rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt 299 (902)
++|++++| ++||+|+......++++++.++|||||||.+|...+..++..+|++|+|||++.+ +..++
T Consensus 54 ~~D~~~~E-----~~rgisi~~~~~~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~g-------v~~~t 121 (527)
T TIGR00503 54 KSDWMEME-----KQRGISITTSVMQFPYRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKG-------VETRT 121 (527)
T ss_pred cCCCCHHH-----HhcCCcEEEEEEEEeeCCeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCC-------CCHHH
Confidence 45666555 9999999999999999999999999999999999999999999999999999988 34678
Q ss_pred HHHHHHHHHhCCCeEEEEEecCCCCCchHHHH-HHHHHHHH---------------------------------------
Q psy15197 300 REHALLVRSLGVNQLGVVINKLDTVSWSQDRF-QEIVTKLG--------------------------------------- 339 (902)
Q Consensus 300 ~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~~-~~i~~~l~--------------------------------------- 339 (902)
..++..+...++| +|+++||+|+...+..++ +++.+.+.
T Consensus 122 ~~l~~~~~~~~~P-iivviNKiD~~~~~~~~ll~~i~~~l~~~~~~~~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~ 200 (527)
T TIGR00503 122 RKLMEVTRLRDTP-IFTFMNKLDRDIRDPLELLDEVENELKINCAPITWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQ 200 (527)
T ss_pred HHHHHHHHhcCCC-EEEEEECccccCCCHHHHHHHHHHHhCCCCccEEEEecCCCceeEEEEcccCcceecCccCCCcee
Confidence 8888877777766 679999999754332211 11111110
Q ss_pred -----------------------------Hhhhhc--------CCCCCCceEecCCCccCCCCCCCCCCcccccccCccc
Q psy15197 340 -----------------------------AFLKQA--------GFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPC 382 (902)
Q Consensus 340 -----------------------------~~l~~~--------~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~ 382 (902)
+.+... -.....+|+++.||+++.|+..
T Consensus 201 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~PV~~GSA~~n~Gv~~--------------- 265 (527)
T TIGR00503 201 AVRQVKGLNNPALDSAVGSDLAQQLRDELELVEGASNEFDLAAFHGGEMTPVFFGTALGNFGVDH--------------- 265 (527)
T ss_pred EeehhccCCChhhhhhhhHHHHHHHHHHHHHHhhhccccCHHHHhcCCeeEEEEeecccCccHHH---------------
Confidence 000000 0112346888999999999988
Q ss_pred HHHHHHhc-CCCCCC---------CCCCceEEEeeEEe--e-CCCeEEEEEEEEeeEeeCCCEEEEccCCcEEEEEEEEE
Q psy15197 383 LLDVIDNF-KTPSRP---------LTKPLRMSVSDIYK--S-TGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYV 449 (902)
Q Consensus 383 Lle~L~~l-~~p~~~---------~~~pl~~~I~~i~~--v-~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~ 449 (902)
|++.+..+ |+|... .+.++...|+++.. + +++|++++.||+||+|+.|+.|+....+...++..++.
T Consensus 266 LLd~i~~~~PsP~~~~~~~~~~~~~~~~~~~~VFK~~~~mdp~~~griaf~RV~sG~l~~g~~v~~~~~~k~~ri~~~~~ 345 (527)
T TIGR00503 266 FLDGLLQWAPKPEARQSDTRTVEPTEEKFSGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLKHVRTGKDVVISDALT 345 (527)
T ss_pred HHHHHHHHCCCCccccCCceecCCCCCCeeEEEEEEEeccCcccCceEEEEEEeeeEEcCCCEEEecCCCCcEEecchhh
Confidence 88877665 444321 24679999999987 6 58999999999999999999999998888888887753
Q ss_pred ----ceEeeeeeccCCeEEEeeeccccccceeeccccCCC
Q psy15197 450 ----DEMSVSAAYAGDNVSVTLLNYDQQNVSVGFLLSELS 485 (902)
Q Consensus 450 ----~~~~v~~a~aGdiv~I~l~~~~~~~i~kG~vL~~~~ 485 (902)
.+.++++|.|||++++... ++++.|++|+...
T Consensus 346 ~~g~~~~~v~~a~aGDI~~~~~~----~~~~~GDtl~~~~ 381 (527)
T TIGR00503 346 FMAGDREHVEEAYAGDIIGLHNH----GTIQIGDTFTQGE 381 (527)
T ss_pred hhcCCceEcceeCCCCEEEEECC----CCcccCCEecCCC
Confidence 6789999999999999876 7899999998743
No 58
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.97 E-value=7.5e-29 Score=301.57 Aligned_cols=232 Identities=21% Similarity=0.223 Sum_probs=179.4
Q ss_pred hhhcccccccccccccCCeEEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchh
Q psy15197 219 LVMRIVPLEGIASALNRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQ 298 (902)
Q Consensus 219 ~~~d~~~~~~~~~e~~rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~q 298 (902)
+++|+.+.| ++||+|++.....++|++++++|||||||.+|...+..+++.+|++|||||++++. ..+
T Consensus 48 ~~~D~~~~e-----~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~-------~~~ 115 (689)
T TIGR00484 48 ATMDWMEQE-----KERGITITSAATTVFWKGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGV-------QPQ 115 (689)
T ss_pred cccCCCHHH-----HhcCCCEecceEEEEECCeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCC-------Chh
Confidence 455666555 99999999999999999999999999999999999999999999999999999983 367
Q ss_pred hHHHHHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhh----------------------------------
Q psy15197 299 TREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQ---------------------------------- 344 (902)
Q Consensus 299 t~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~---------------------------------- 344 (902)
+..++..+...++| +|+++||+|+...+.. +..+++...+..
T Consensus 116 ~~~~~~~~~~~~~p-~ivviNK~D~~~~~~~---~~~~~i~~~l~~~~~~~~ipis~~~~~~~~id~~~~~~~~~~~~~~ 191 (689)
T TIGR00484 116 SETVWRQANRYEVP-RIAFVNKMDKTGANFL---RVVNQIKQRLGANAVPIQLPIGAEDNFIGVIDLVEMKAYFFNGDKG 191 (689)
T ss_pred HHHHHHHHHHcCCC-EEEEEECCCCCCCCHH---HHHHHHHHHhCCCceeEEeccccCCCceEEEECccceEEecccCCC
Confidence 88888888888877 4589999998753321 111222111110
Q ss_pred -----------------------------------------cC--------------CCCCCceEecCCCccCCCCCCCC
Q psy15197 345 -----------------------------------------AG--------------FRDSDIEYVPCSGLTGENLTTPS 369 (902)
Q Consensus 345 -----------------------------------------~~--------------~~~~~~~ii~iSA~~G~gI~~~~ 369 (902)
.. .....+|+++.||+++.|+..
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~~~~~~l~~~l~~~~~~~~~~PV~~gSa~~~~Gv~~-- 269 (689)
T TIGR00484 192 TKAIEKEIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEGEELTIEEIKNAIRKGVLNCEFFPVLCGSAFKNKGVQL-- 269 (689)
T ss_pred ceeeeccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCEEEEEeccccCCccHHH--
Confidence 00 012335677778888888776
Q ss_pred CCcccccccCcccHHHHHHh-cCCCCC-------------------CCCCCceEEEeeEEeeCCCeEEEEEEEEeeEeeC
Q psy15197 370 QVPALTSWYSGPCLLDVIDN-FKTPSR-------------------PLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILA 429 (902)
Q Consensus 370 ~~~~~~~w~~g~~Lle~L~~-l~~p~~-------------------~~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~ 429 (902)
|++.|.. +|.|.. ..+.|+.+.|+++..+++.|.++++||++|+|+.
T Consensus 270 -------------LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~~~d~~~G~i~~~RV~sGtL~~ 336 (689)
T TIGR00484 270 -------------LLDAVVDYLPSPTDVPAIKGIDPDTEKEIERKASDDEPFSALAFKVATDPFVGQLTFVRVYSGVLKS 336 (689)
T ss_pred -------------HHHHHHHHCCCchhcccccccCCCCCceeeecCCCCCceEEEEEEeeecCCCCeEEEEEEEEeEEcC
Confidence 7777754 454421 1256899999999999999999999999999999
Q ss_pred CCEEEEccCCcEEEEEEEEE----ceEeeeeeccCCeEEEeeeccccccceeeccccCCC
Q psy15197 430 GEKVMVQPQNEVTTVKAVYV----DEMSVSAAYAGDNVSVTLLNYDQQNVSVGFLLSELS 485 (902)
Q Consensus 430 Gd~v~l~p~~~~~~V~sI~~----~~~~v~~a~aGdiv~I~l~~~~~~~i~kG~vL~~~~ 485 (902)
||.|++...+...++..|.. ...+++++.|||+++|.+. +++++|++|++..
T Consensus 337 g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~~~aGdI~~i~gl----~~~~~gdtl~~~~ 392 (689)
T TIGR00484 337 GSYVKNSRKNKKERVGRLVKMHANNREEIKEVRAGDICAAIGL----KDTTTGDTLCDPK 392 (689)
T ss_pred CCEEEeCCCCceEEecceEEeecCCcccccccCCCCEEEEcCC----CCCCCCCEEeCCC
Confidence 99999877666677777764 4578999999999999775 5678999997654
No 59
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=6.2e-29 Score=261.63 Aligned_cols=223 Identities=27% Similarity=0.429 Sum_probs=190.1
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHHH
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDR 330 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~ 330 (902)
+.+.|+|.|||+-.+..|+++....|++||||+|++.. .++||++|+..+.-.|++.+||+-||+|+++ .++
T Consensus 86 R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpc------PQPQT~EHl~AleIigik~iiIvQNKIDlV~--~E~ 157 (415)
T COG5257 86 RRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPC------PQPQTREHLMALEIIGIKNIIIVQNKIDLVS--RER 157 (415)
T ss_pred EEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCC------CCCchHHHHHHHhhhccceEEEEecccceec--HHH
Confidence 57899999999999999999999999999999999874 6799999999999999999999999999996 444
Q ss_pred HHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCcccHHHHHH-hcCCCCCCCCCCceEEEeeEE
Q psy15197 331 FQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVID-NFKTPSRPLTKPLRMSVSDIY 409 (902)
Q Consensus 331 ~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L~-~l~~p~~~~~~pl~~~I~~i~ 409 (902)
..+-.+++.++++..- .++.|++|+||..+.||+. |+++|. .++.|.++.++|.+|.|.+.|
T Consensus 158 AlE~y~qIk~FvkGt~--Ae~aPIIPiSA~~~~NIDa---------------l~e~i~~~IptP~rd~~~~p~m~v~RSF 220 (415)
T COG5257 158 ALENYEQIKEFVKGTV--AENAPIIPISAQHKANIDA---------------LIEAIEKYIPTPERDLDKPPRMYVARSF 220 (415)
T ss_pred HHHHHHHHHHHhcccc--cCCCceeeehhhhccCHHH---------------HHHHHHHhCCCCccCCCCCceEEEEeec
Confidence 4555566777776442 3678999999999999998 888886 478888999999999999999
Q ss_pred eeCC--------CeEEEEEEEEeeEeeCCCEEEEccCC------------cEEEEEEEEEceEeeeeeccCCeEEEeeec
Q psy15197 410 KSTG--------SGYCIAGRVETGVILAGEKVMVQPQN------------EVTTVKAVYVDEMSVSAAYAGDNVSVTLLN 469 (902)
Q Consensus 410 ~v~g--------~G~V~~GrV~sG~Lk~Gd~v~l~p~~------------~~~~V~sI~~~~~~v~~a~aGdiv~I~l~~ 469 (902)
.+.. .|-|..|.+.+|.|++||.+.+.|.= -..+|.|++-....+++|.+|..+++.-..
T Consensus 221 DVNkPGt~~~~L~GGViGGsl~~G~l~vGDEIEIrPGi~v~k~~k~~~~pi~T~i~Sl~ag~~~~~ea~PGGLvgvGT~l 300 (415)
T COG5257 221 DVNKPGTPPEELKGGVIGGSLVQGVLRVGDEIEIRPGIVVEKGGKTVWEPITTEIVSLQAGGEDVEEARPGGLVGVGTKL 300 (415)
T ss_pred ccCCCCCCHHHccCceecceeeeeeEecCCeEEecCCeEeecCCceEEEEeeEEEEEEEeCCeeeeeccCCceEEEeccc
Confidence 8753 57799999999999999999998852 145788888889999999999999997752
Q ss_pred ---cccccceeeccccCCCCCCCCcccceeee
Q psy15197 470 ---YDQQNVSVGFLLSELSHPCPVSSKFEARI 498 (902)
Q Consensus 470 ---~~~~~i~kG~vL~~~~~~~~~~~~F~a~i 498 (902)
+++.|.-.|.+++.+...|+...+|+.+.
T Consensus 301 DP~ltKaD~L~G~V~G~pG~lPpv~~~~~ie~ 332 (415)
T COG5257 301 DPTLTKADALVGQVVGKPGTLPPVWTSIRIEY 332 (415)
T ss_pred CcchhhhhhhccccccCCCCCCCceEEEEEEe
Confidence 45677778889999998888777777655
No 60
>KOG1143|consensus
Probab=99.97 E-value=1.3e-29 Score=269.85 Aligned_cols=298 Identities=26% Similarity=0.423 Sum_probs=230.6
Q ss_pred CCeEEEEEeCCCccchHHHHHHHHHH--cCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCc
Q psy15197 249 KTKYITLLDAPGHKDFIPNMITGATQ--ADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSW 326 (902)
Q Consensus 249 ~~~~i~lIDTPG~~df~~~~~~~l~~--aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~ 326 (902)
..+.++|||.+||++|.+.++.++.. .|+++|||.|..|+ ...+++|+.++.++++|.+ |+++|||+++
T Consensus 247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi-------~~tTrEHLgl~~AL~iPfF-vlvtK~Dl~~- 317 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGI-------TWTTREHLGLIAALNIPFF-VLVTKMDLVD- 317 (591)
T ss_pred hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCC-------ccccHHHHHHHHHhCCCeE-EEEEeecccc-
Confidence 46799999999999999999999985 89999999999994 4689999999999999854 9999999986
Q ss_pred hHHHHHHHHHHHHHhhhhcCCC---------------------CCCceEecCCCccCCCCCCCCCCcccccccCcccHHH
Q psy15197 327 SQDRFQEIVTKLGAFLKQAGFR---------------------DSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLD 385 (902)
Q Consensus 327 ~~~~~~~i~~~l~~~l~~~~~~---------------------~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle 385 (902)
...++.+.+++..++.+.|+. +..+||+.+|..+|+|+.- |..
T Consensus 318 -~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~l---------------l~~ 381 (591)
T KOG1143|consen 318 -RQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRL---------------LRT 381 (591)
T ss_pred -chhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhH---------------HHH
Confidence 456777888888888887753 2346899999999999874 444
Q ss_pred HHHhcCCCCC------CCCCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCc----EEEEEEEEEceEeee
Q psy15197 386 VIDNFKTPSR------PLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNE----VTTVKAVYVDEMSVS 455 (902)
Q Consensus 386 ~L~~l~~p~~------~~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~----~~~V~sI~~~~~~v~ 455 (902)
.|.-++|-.. ....|..|.|+++|++|.+|.|+.|.+.+|.++.|+.+.++|.+. +.+|.+|+.++.++.
T Consensus 382 fLn~Lsp~~~~~e~~~L~q~~~eFqvdEiy~Vp~VG~VVGG~Ls~G~l~Eg~~~~vGP~~DG~F~~itV~sI~Rnr~acr 461 (591)
T KOG1143|consen 382 FLNCLSPAGTAEERIQLVQLPAEFQVDEIYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIRRNRQACR 461 (591)
T ss_pred HHhhcCCcCChHHHHHHhcCcceeeHhHeecCCcccccccceeeeceeccCceeEeecCCCCceeEEEeeeeecccccee
Confidence 4444433221 125688999999999999999999999999999999999999764 678999999999999
Q ss_pred eeccCCeEEEeeeccccccceeeccccCCCCCCCCcccceeeeeeecccCCcccccceecchhhhhhhheecc-------
Q psy15197 456 AAYAGDNVSVTLLNYDQQNVSVGFLLSELSHPCPVSSKFEARIVVFNITTPITIGYPVTHDITHLTKAAIFSE------- 528 (902)
Q Consensus 456 ~a~aGdiv~I~l~~~~~~~i~kG~vL~~~~~~~~~~~~F~a~irvvHakg~ga~G~fv~~~is~~~~A~if~~------- 528 (902)
.+.||+.+.|.+...+.-.+++||+|..+.+.|+.+..|+|++.++.|...++.|+.++..+...++..++..
T Consensus 462 vvraGqaAslsl~d~D~~~LR~GMVl~~~~~nP~~c~~F~A~~~lLfHaT~i~~GFQ~TVhiGsvrqTAvi~~I~~~d~l 541 (591)
T KOG1143|consen 462 VVRAGQAASLSLNDPDGVSLRRGMVLAEIDHNPPVCYEFTANLLLLFHATYICEGFQATVHIGSVRQTAVITHIDDADCL 541 (591)
T ss_pred eecCccceeeeccCCCccchhcceEEeecCCCCceEEEEeeeehhhhhhHhheecceEEEEEcceeeeeeeeeecccccc
Confidence 9999999999998777777899999999888888999999999777666789999984433444444444433
Q ss_pred -cCceeeEEEEEeeccCCCCCCCCCCCcccceeEEEccCCceeeeccccceecc
Q psy15197 529 -IGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWDLVGNNTPIFFV 581 (902)
Q Consensus 529 -~gk~tpv~vRFS~~~g~~~~~D~~~d~RG~AiKf~~~eG~~D~v~~n~PvFf~ 581 (902)
+|+.. .+||--+ +.|+-.|. |+-|-|. ||-.-=++.-+-||++
T Consensus 542 rtg~~A--vV~f~F~----~hPEyir~--G~~ilfR--eG~tKGiG~Vt~Vfp~ 585 (591)
T KOG1143|consen 542 RTGKWA--VVKFCFA----YHPEYIRE--GSPILFR--EGKTKGIGEVTKVFPC 585 (591)
T ss_pred cCCceE--EEEEEec----CCchhccC--CCeeeee--cccccccceEEEEEec
Confidence 24443 3444433 23454543 5555553 3443334444555554
No 61
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.96 E-value=4.6e-29 Score=258.04 Aligned_cols=147 Identities=36% Similarity=0.537 Sum_probs=130.2
Q ss_pred cccCCeEEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCC
Q psy15197 232 ALNRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGV 311 (902)
Q Consensus 232 e~~rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i 311 (902)
|++||+|++.....+++++++++|+|||||.+|...+..++..+|++|+|||+..| ...++++++..+...++
T Consensus 46 E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g-------~~~~~~~~~~~~~~~~~ 118 (195)
T cd01884 46 EKARGITINTAHVEYETANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDG-------PMPQTREHLLLARQVGV 118 (195)
T ss_pred hhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCC-------CcHHHHHHHHHHHHcCC
Confidence 48999999999999999999999999999999999999999999999999999988 44689999999999998
Q ss_pred CeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccC-cccHHHHHHhc
Q psy15197 312 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYS-GPCLLDVIDNF 390 (902)
Q Consensus 312 ~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~-g~~Lle~L~~l 390 (902)
+++|+|+||||++. +.+.++.+.+++..+++.++++..++|++++||++|.|+.+ .+.||+ +++|+++|+++
T Consensus 119 ~~iIvviNK~D~~~-~~~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~~~------~~~w~~~~~~l~~~l~~~ 191 (195)
T cd01884 119 PYIVVFLNKADMVD-DEELLELVEMEVRELLSKYGFDGDNTPIVRGSALKALEGDD------PNKWVKKILELLDALDSY 191 (195)
T ss_pred CcEEEEEeCCCCCC-cHHHHHHHHHHHHHHHHHhcccccCCeEEEeeCccccCCCC------CCcchhcHhHHHHHHHhC
Confidence 87889999999974 34456667788999999999877789999999999999765 378997 69999999977
Q ss_pred CC
Q psy15197 391 KT 392 (902)
Q Consensus 391 ~~ 392 (902)
.+
T Consensus 192 ~~ 193 (195)
T cd01884 192 IP 193 (195)
T ss_pred CC
Confidence 54
No 62
>KOG0461|consensus
Probab=99.96 E-value=1.1e-28 Score=260.73 Aligned_cols=227 Identities=28% Similarity=0.443 Sum_probs=194.3
Q ss_pred ccCCeEEeeeEEEEEEC---------CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHH
Q psy15197 233 LNRGITMDVGQSQFETK---------TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHA 303 (902)
Q Consensus 233 ~~rGiTid~~~~~~~~~---------~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l 303 (902)
.+||+|.|+....+... -.+++|+|+|||...+...+.+....|+.++|||+..| ++.|+.+++
T Consensus 43 ~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG-------~QtQtAEcL 115 (522)
T KOG0461|consen 43 TERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKG-------KQTQTAECL 115 (522)
T ss_pred cccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhcc-------cccccchhh
Confidence 67888888887766532 24689999999999999999999999999999999999 668999998
Q ss_pred HHHHHhCCCeEEEEEecCCCCCch--HHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccC----CCCCCCCCCcccccc
Q psy15197 304 LLVRSLGVNQLGVVINKLDTVSWS--QDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTG----ENLTTPSQVPALTSW 377 (902)
Q Consensus 304 ~~l~~~~i~~iIVviNKiDl~~~~--~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G----~gI~~~~~~~~~~~w 377 (902)
.+...+. +..|||+||+|....+ ...+++..+++.+.|+..++. .+.||+++||+.| ++|.+
T Consensus 116 iig~~~c-~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~-g~~PI~~vsa~~G~~~~~~i~e---------- 183 (522)
T KOG0461|consen 116 IIGELLC-KKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFD-GNSPIVEVSAADGYFKEEMIQE---------- 183 (522)
T ss_pred hhhhhhc-cceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCcC-CCCceeEEecCCCccchhHHHH----------
Confidence 7666554 5577999999986532 345677777888889988886 4679999999999 67776
Q ss_pred cCcccHHHHHH-hcCCCCCCCCCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCcEEEEEEEEEceEeeee
Q psy15197 378 YSGPCLLDVID-NFKTPSRPLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYVDEMSVSA 456 (902)
Q Consensus 378 ~~g~~Lle~L~-~l~~p~~~~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~~~~~v~~ 456 (902)
|.++|+ .+-.|.++...||.|.|+.+|.++|.|+|++|.|.+|.|+.|+.|.+...++.-+|+++++.+.++.+
T Consensus 184 -----L~e~l~s~if~P~Rd~~gpflm~vDHCF~IKGQGTV~TGTvl~G~~~ln~~iE~PAL~e~rkVKslqmf~~~vts 258 (522)
T KOG0461|consen 184 -----LKEALESRIFEPKRDEEGPFLMAVDHCFAIKGQGTVLTGTVLRGVLRLNTEIEFPALNEKRKVKSLQMFKQRVTS 258 (522)
T ss_pred -----HHHHHHHhhcCCCcCCCCCeEEEeeeeEEeccCceEEeeeEEEeEEecCcEEeecccchhhhhhhHHHHhhhhhh
Confidence 888886 46778899999999999999999999999999999999999999999988898999999999999999
Q ss_pred eccCCeEEEeeeccccccceeeccccCC
Q psy15197 457 AYAGDNVSVTLLNYDQQNVSVGFLLSEL 484 (902)
Q Consensus 457 a~aGdiv~I~l~~~~~~~i~kG~vL~~~ 484 (902)
|.+||.++++....+.+-+.+|. ++.+
T Consensus 259 a~~GdR~g~cVtqFd~klleRgi-~~~p 285 (522)
T KOG0461|consen 259 AAAGDRAGFCVTQFDEKLLERGI-CGPP 285 (522)
T ss_pred hhcccceeeeeeccCHHHHhccc-cCCC
Confidence 99999999999888878788884 3433
No 63
>PRK13351 elongation factor G; Reviewed
Probab=99.96 E-value=1.8e-27 Score=290.09 Aligned_cols=223 Identities=24% Similarity=0.305 Sum_probs=177.3
Q ss_pred ccCCeEEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCC
Q psy15197 233 LNRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVN 312 (902)
Q Consensus 233 ~~rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~ 312 (902)
+++|+|+......+.|+++.++|||||||.+|...+..+++.+|++|+|+|++.+. ..++..++..+...++|
T Consensus 55 ~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~-------~~~~~~~~~~~~~~~~p 127 (687)
T PRK13351 55 QERGITIESAATSCDWDNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGV-------QPQTETVWRQADRYGIP 127 (687)
T ss_pred HhcCCCcccceEEEEECCEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCC-------CHHHHHHHHHHHhcCCC
Confidence 89999999999999999999999999999999999999999999999999999883 35778888888888877
Q ss_pred eEEEEEecCCCCCchHHHHHHHHHHHHH----------------------------------------------------
Q psy15197 313 QLGVVINKLDTVSWSQDRFQEIVTKLGA---------------------------------------------------- 340 (902)
Q Consensus 313 ~iIVviNKiDl~~~~~~~~~~i~~~l~~---------------------------------------------------- 340 (902)
+++|+||+|+...+. ....++++.
T Consensus 128 -~iiviNK~D~~~~~~---~~~~~~i~~~l~~~~~~~~~P~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (687)
T PRK13351 128 -RLIFINKMDRVGADL---FKVLEDIEERFGKRPLPLQLPIGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELL 203 (687)
T ss_pred -EEEEEECCCCCCCCH---HHHHHHHHHHHCCCeEEEEeccccCCceEEEEECccceEEecccCCCCCceEEccCCHHHH
Confidence 568999999865321 111111111
Q ss_pred ------------------------hhhhcCC--------------CCCCceEecCCCccCCCCCCCCCCcccccccCccc
Q psy15197 341 ------------------------FLKQAGF--------------RDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPC 382 (902)
Q Consensus 341 ------------------------~l~~~~~--------------~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~ 382 (902)
+++...+ ...-+|+++.||++|.|+..
T Consensus 204 ~~~~~~~~~l~e~~~~~d~~lle~~l~~~~l~~~~l~~~~~~~~~~~~~~PV~~gSA~~~~Gv~~--------------- 268 (687)
T PRK13351 204 EEVEEAREKLIEALAEFDDELLELYLEGEELSAEQLRAPLREGTRSGHLVPVLFGSALKNIGIEP--------------- 268 (687)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCEEEEEecccCcCccHHH---------------
Confidence 1110000 11246899999999999998
Q ss_pred HHHHHHh-cCCCCC------------------CCCCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCcEEE
Q psy15197 383 LLDVIDN-FKTPSR------------------PLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTT 443 (902)
Q Consensus 383 Lle~L~~-l~~p~~------------------~~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~~ 443 (902)
|++.|.. +|.|.. ..+.|+.+.|++++.+++.|+++++||++|+|+.|+.|++.+.+...+
T Consensus 269 LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~~~d~~~G~i~~~RV~sGtl~~g~~v~~~~~~~~~~ 348 (687)
T PRK13351 269 LLDAVVDYLPSPLEVPPPRGSKDNGKPVKVDPDPEKPLLALVFKVQYDPYAGKLTYLRVYSGTLRAGSQLYNGTGGKREK 348 (687)
T ss_pred HHHHHHHHCCChhhcccccccCCCCCceeecCCCCCCeEEEEEEeeecCCCceEEEEEEeEEEEcCCCEEEeCCCCCceE
Confidence 7777755 555431 235789999999999999999999999999999999999998877777
Q ss_pred EEEEEE----ceEeeeeeccCCeEEEeeeccccccceeeccccCCC
Q psy15197 444 VKAVYV----DEMSVSAAYAGDNVSVTLLNYDQQNVSVGFLLSELS 485 (902)
Q Consensus 444 V~sI~~----~~~~v~~a~aGdiv~I~l~~~~~~~i~kG~vL~~~~ 485 (902)
+..|.. ...+++++.|||+++|.+. +++.+|++|+...
T Consensus 349 i~~i~~~~g~~~~~v~~~~aGdI~~i~gl----~~~~~gdtl~~~~ 390 (687)
T PRK13351 349 VGRLFRLQGNKREEVDRAKAGDIVAVAGL----KELETGDTLHDSA 390 (687)
T ss_pred eeeEEEEccCCeeECCccCCCCEEEEECc----ccCccCCEEeCCC
Confidence 777764 4688999999999998775 5677899997654
No 64
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.96 E-value=2.8e-27 Score=285.97 Aligned_cols=219 Identities=29% Similarity=0.359 Sum_probs=172.9
Q ss_pred cCCeEEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCe
Q psy15197 234 NRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQ 313 (902)
Q Consensus 234 ~rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~ 313 (902)
.+|+|++.....+.++++.++|||||||.+|...+.+++..+|++|||||+++|. ..++.+++..+...++|
T Consensus 320 ~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv-------~~qT~e~i~~a~~~~vP- 391 (787)
T PRK05306 320 AGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGV-------MPQTIEAINHAKAAGVP- 391 (787)
T ss_pred cCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCC-------CHhHHHHHHHHHhcCCc-
Confidence 3678888888889999999999999999999999999999999999999999984 46899999988888987
Q ss_pred EEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCcccHHHHHHh---c
Q psy15197 314 LGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDN---F 390 (902)
Q Consensus 314 iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L~~---l 390 (902)
+||++||||+.+++.......+.+...+.+..+ ..++++++||++|.||.+ |++.|.. +
T Consensus 392 iIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g---~~vp~vpvSAktG~GI~e---------------Lle~I~~~~e~ 453 (787)
T PRK05306 392 IIVAINKIDKPGANPDRVKQELSEYGLVPEEWG---GDTIFVPVSAKTGEGIDE---------------LLEAILLQAEV 453 (787)
T ss_pred EEEEEECccccccCHHHHHHHHHHhcccHHHhC---CCceEEEEeCCCCCCchH---------------HHHhhhhhhhh
Confidence 779999999976443332221111111111211 236899999999999998 4444432 2
Q ss_pred CCCCCCCCCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCcEEEEEEEEE-ceEeeeeeccCCeEEEeeec
Q psy15197 391 KTPSRPLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYV-DEMSVSAAYAGDNVSVTLLN 469 (902)
Q Consensus 391 ~~p~~~~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~-~~~~v~~a~aGdiv~I~l~~ 469 (902)
.......+.++++.|++++.+++.|.|++++|++|+|+.||.|++++ ...+|+++.. +..++++|.||++|.|.+.
T Consensus 454 ~~l~~~~~~~~~g~V~es~~dkg~G~v~~v~V~sGtLk~Gd~vv~g~--~~gkVr~m~~~~~~~v~~A~pGd~V~I~gl- 530 (787)
T PRK05306 454 LELKANPDRPARGTVIEAKLDKGRGPVATVLVQNGTLKVGDIVVAGT--TYGRVRAMVDDNGKRVKEAGPSTPVEILGL- 530 (787)
T ss_pred hhcccCCCCCcEEEEEEEEEcCCCeEEEEEEEecCeEecCCEEEECC--cEEEEEEEECCCCCCCCEEcCCCeEEEeCC-
Confidence 22234457889999999999999999999999999999999999975 4678888886 5678999999999999876
Q ss_pred cccccc-eeeccccCC
Q psy15197 470 YDQQNV-SVGFLLSEL 484 (902)
Q Consensus 470 ~~~~~i-~kG~vL~~~ 484 (902)
+++ ..|++|...
T Consensus 531 ---~~~p~~Gd~l~~~ 543 (787)
T PRK05306 531 ---SGVPQAGDEFVVV 543 (787)
T ss_pred ---CCCCCCCCEEEEc
Confidence 455 788888643
No 65
>PRK12740 elongation factor G; Reviewed
Probab=99.95 E-value=3.4e-27 Score=286.99 Aligned_cols=234 Identities=25% Similarity=0.305 Sum_probs=180.3
Q ss_pred hhcccccccccccccCCeEEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhh
Q psy15197 220 VMRIVPLEGIASALNRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQT 299 (902)
Q Consensus 220 ~~d~~~~~~~~~e~~rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt 299 (902)
++|+.+.| ++||+|++.....+.++++.++|||||||.+|...+..++..+|++|+|+|++.+. ..++
T Consensus 34 ~~d~~~~e-----~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~-------~~~~ 101 (668)
T PRK12740 34 TMDFMPEE-----RERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGV-------EPQT 101 (668)
T ss_pred cCCCChHH-----HhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCc-------CHHH
Confidence 44554444 89999999999999999999999999999999999999999999999999999883 3577
Q ss_pred HHHHHHHHHhCCCeEEEEEecCCCCCchHHH-HHHHHHHH----------------------------------------
Q psy15197 300 REHALLVRSLGVNQLGVVINKLDTVSWSQDR-FQEIVTKL---------------------------------------- 338 (902)
Q Consensus 300 ~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~-~~~i~~~l---------------------------------------- 338 (902)
..++..+...++| +|+|+||+|+...+... .+++.+.+
T Consensus 102 ~~~~~~~~~~~~p-~iiv~NK~D~~~~~~~~~~~~l~~~l~~~~~~~~~p~~~~~~~~~~id~~~~~~~~~~~~~~~~~~ 180 (668)
T PRK12740 102 ETVWRQAEKYGVP-RIIFVNKMDRAGADFFRVLAQLQEKLGAPVVPLQLPIGEGDDFTGVVDLLSMKAYRYDEGGPSEEI 180 (668)
T ss_pred HHHHHHHHHcCCC-EEEEEECCCCCCCCHHHHHHHHHHHHCCCceeEEecccCCCCceEEEECccceEEEecCCCeeEEe
Confidence 7777878788877 55899999986432211 11111100
Q ss_pred -----------------------------HHhhhhcC--------------CCCCCceEecCCCccCCCCCCCCCCcccc
Q psy15197 339 -----------------------------GAFLKQAG--------------FRDSDIEYVPCSGLTGENLTTPSQVPALT 375 (902)
Q Consensus 339 -----------------------------~~~l~~~~--------------~~~~~~~ii~iSA~~G~gI~~~~~~~~~~ 375 (902)
+.+++... ....-+|++++||++|.|+..
T Consensus 181 ~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~~~l~~~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~-------- 252 (668)
T PRK12740 181 EIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEELSEEEIKAGLRKATLAGEIVPVFCGSALKNKGVQR-------- 252 (668)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCEEEEEeccccCCccHHH--------
Confidence 00010000 011246899999999999998
Q ss_pred cccCcccHHHHHHh-cCCCCC-----------------CCCCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEcc
Q psy15197 376 SWYSGPCLLDVIDN-FKTPSR-----------------PLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQP 437 (902)
Q Consensus 376 ~w~~g~~Lle~L~~-l~~p~~-----------------~~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p 437 (902)
|++.|.. +|+|.. ..+.|+.+.|++++.+++.|+++++||++|+|+.||.|++.+
T Consensus 253 -------LLd~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~l~a~v~k~~~~~~~G~i~~~RV~sG~L~~g~~v~~~~ 325 (668)
T PRK12740 253 -------LLDAVVDYLPSPLEVPPVDGEDGEEGAELAPDPDGPLVALVFKTMDDPFVGKLSLVRVYSGTLKKGDTLYNSG 325 (668)
T ss_pred -------HHHHHHHHCCChhhcccccCCCCccccccccCCCCCeEEEEEEeeecCCCCcEEEEEEeeeEEcCCCEEEeCC
Confidence 7777755 555521 235689999999999999999999999999999999999998
Q ss_pred CCcEEEEEEEEE----ceEeeeeeccCCeEEEeeeccccccceeeccccCCC
Q psy15197 438 QNEVTTVKAVYV----DEMSVSAAYAGDNVSVTLLNYDQQNVSVGFLLSELS 485 (902)
Q Consensus 438 ~~~~~~V~sI~~----~~~~v~~a~aGdiv~I~l~~~~~~~i~kG~vL~~~~ 485 (902)
.+...++..|.. ...+++++.|||+++|.+. +.+++|++|+...
T Consensus 326 ~~~~~~i~~l~~l~g~~~~~v~~~~aGdI~~i~gl----~~~~~Gdtl~~~~ 373 (668)
T PRK12740 326 TGKKERVGRLYRMHGKQREEVDEAVAGDIVAVAKL----KDAATGDTLCDKG 373 (668)
T ss_pred CCCcEEecceeeecCCCccccCccCCCCEEEEecc----CccCCCCEEeCCC
Confidence 777677776653 4688999999999999864 4689999997654
No 66
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.95 E-value=6.7e-27 Score=285.15 Aligned_cols=241 Identities=24% Similarity=0.323 Sum_probs=170.5
Q ss_pred ccCCeEEeeeEEE----EEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHH
Q psy15197 233 LNRGITMDVGQSQ----FETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRS 308 (902)
Q Consensus 233 ~~rGiTid~~~~~----~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~ 308 (902)
++||+|++..... ++++++.++|||||||.+|...+..+++.+|++|+|+|+..|+ ..++.+++..+..
T Consensus 64 ~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~-------~~~t~~~~~~~~~ 136 (720)
T TIGR00490 64 QERGITINAANVSMVHEYEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGV-------MPQTETVLRQALK 136 (720)
T ss_pred HhhcchhhcccceeEEeecCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCC-------CccHHHHHHHHHH
Confidence 7788888876654 5678899999999999999999999999999999999999984 4688888888777
Q ss_pred hCCCeEEEEEecCCCCCch--------HHHHHHHHHHHHHhhhhc---------CCCCCCceEecCCCccCCCCCCCC--
Q psy15197 309 LGVNQLGVVINKLDTVSWS--------QDRFQEIVTKLGAFLKQA---------GFRDSDIEYVPCSGLTGENLTTPS-- 369 (902)
Q Consensus 309 ~~i~~iIVviNKiDl~~~~--------~~~~~~i~~~l~~~l~~~---------~~~~~~~~ii~iSA~~G~gI~~~~-- 369 (902)
.++|. |+|+||+|+...+ .+++..+...+...+... -+......+.+.|++.+++..-+.
T Consensus 137 ~~~p~-ivviNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~f~s~~~~~~~~~~~~~ 215 (720)
T TIGR00490 137 ENVKP-VLFINKVDRLINELKLTPQELQERFIKIITEVNKLIKAMAPEEFRDKWKVRVEDGSVAFGSAYYNWAISVPSMK 215 (720)
T ss_pred cCCCE-EEEEEChhcccchhcCCHHHHHHHHhhhhHHHHhhhhccCCHHHhhceEechhhCCHHHHhhhhcccccchhHh
Confidence 78775 5999999986321 223334444444444321 011112234556666664331100
Q ss_pred CC----ccc------------ccccC-cccHHHHHHh-cCCCCC-------------------------CCCCCceEEEe
Q psy15197 370 QV----PAL------------TSWYS-GPCLLDVIDN-FKTPSR-------------------------PLTKPLRMSVS 406 (902)
Q Consensus 370 ~~----~~~------------~~w~~-g~~Lle~L~~-l~~p~~-------------------------~~~~pl~~~I~ 406 (902)
.. ..+ ..|.. -..|++.|.. +|.|.. ..+.|+.+.|+
T Consensus 216 ~~~~~~~~l~~~~~~~~~~~~~~~~Pv~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~Vf 295 (720)
T TIGR00490 216 KTGIGFKDIYKYCKEDKQKELAKKSPLHQVVLDMVIRHLPSPIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMIT 295 (720)
T ss_pred hcCCCHHHHHHHHHhccHHHHhhhhhHHHHHHHHHHHhCCChhhhhhhcccccccCCCCccchhhcccCCCCCCeEEEEE
Confidence 00 000 01110 0124555543 444421 12468999999
Q ss_pred eEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCcEEEEEEEEEc----eEeeeeeccCCeEEEeeeccccccceeecccc
Q psy15197 407 DIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYVD----EMSVSAAYAGDNVSVTLLNYDQQNVSVGFLLS 482 (902)
Q Consensus 407 ~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~~----~~~v~~a~aGdiv~I~l~~~~~~~i~kG~vL~ 482 (902)
++...++.|++++|||++|+|++||.|++.+.+...+|..|+.. ..++++|.|||+|+|.+. +++.+|++|+
T Consensus 296 K~~~~~~~G~ia~~RV~sGtL~~G~~l~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~i~gl----~~~~~GdtL~ 371 (720)
T TIGR00490 296 KIVVDKHAGEVAVGRLYSGTIRPGMEVYIVDRKAKARIQQVGVYMGPERVEVDEIPAGNIVAVIGL----KDAVAGETIC 371 (720)
T ss_pred EEEecCCCcEEEEEEEEeCEEcCCCEEEEcCCCCeeEeeEEEEeccCCccCccEECCCCEEEEECc----cccccCceee
Confidence 99999999999999999999999999999999888899998753 568999999999999774 5778999998
Q ss_pred CCC
Q psy15197 483 ELS 485 (902)
Q Consensus 483 ~~~ 485 (902)
...
T Consensus 372 ~~~ 374 (720)
T TIGR00490 372 TTV 374 (720)
T ss_pred cCC
Confidence 654
No 67
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.95 E-value=1.5e-26 Score=273.82 Aligned_cols=217 Identities=29% Similarity=0.358 Sum_probs=168.2
Q ss_pred cCCeEEeeeEEEEEECCe-EEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCC
Q psy15197 234 NRGITMDVGQSQFETKTK-YITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVN 312 (902)
Q Consensus 234 ~rGiTid~~~~~~~~~~~-~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~ 312 (902)
.+|+|++.....+.+++. .++|||||||.+|...+.+++..+|++|||+|++++. ..|+.+++..+...++|
T Consensus 117 ~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv-------~~qT~e~i~~~~~~~vP 189 (587)
T TIGR00487 117 AGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGV-------MPQTIEAISHAKAANVP 189 (587)
T ss_pred CCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCC-------CHhHHHHHHHHHHcCCC
Confidence 357888888778888655 9999999999999999999999999999999999984 46899999888888877
Q ss_pred eEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCcccHHHHHHh---
Q psy15197 313 QLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDN--- 389 (902)
Q Consensus 313 ~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L~~--- 389 (902)
+|+++||+|+.+.+.++......+........+ ...+++++||++|.|+.+ |++.|..
T Consensus 190 -iIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~~---~~~~~v~iSAktGeGI~e---------------Ll~~I~~~~~ 250 (587)
T TIGR00487 190 -IIVAINKIDKPEANPDRVKQELSEYGLVPEDWG---GDTIFVPVSALTGDGIDE---------------LLDMILLQSE 250 (587)
T ss_pred -EEEEEECcccccCCHHHHHHHHHHhhhhHHhcC---CCceEEEEECCCCCChHH---------------HHHhhhhhhh
Confidence 779999999975433333222222111111111 235899999999999998 5554422
Q ss_pred cCCCCCCCCCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCcEEEEEEEEE-ceEeeeeeccCCeEEEeee
Q psy15197 390 FKTPSRPLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYV-DEMSVSAAYAGDNVSVTLL 468 (902)
Q Consensus 390 l~~p~~~~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~-~~~~v~~a~aGdiv~I~l~ 468 (902)
+.......+.|+++.|.+++.+++.|++++|+|++|+|++||.|.+++. ..+|++++. +...+++|.||+.|.|.+.
T Consensus 251 ~~~l~~~~~~~~~~~V~ev~~~~g~G~v~~~~V~~GtL~~Gd~iv~~~~--~~kVr~l~~~~g~~v~~a~~g~~v~i~Gl 328 (587)
T TIGR00487 251 VEELKANPNGQASGVVIEAQLDKGRGPVATVLVQSGTLRVGDIVVVGAA--YGRVRAMIDENGKSVKEAGPSKPVEILGL 328 (587)
T ss_pred hccccCCCCCCceeEEEEEEEeCCCcEEEEEEEEeCEEeCCCEEEECCC--ccEEEEEECCCCCCCCEECCCCEEEEeCC
Confidence 2222334568999999999999999999999999999999999999885 467899987 6678999999999998875
Q ss_pred ccccccc-eeecccc
Q psy15197 469 NYDQQNV-SVGFLLS 482 (902)
Q Consensus 469 ~~~~~~i-~kG~vL~ 482 (902)
+++ ..|+.|.
T Consensus 329 ----~~~p~aGd~~~ 339 (587)
T TIGR00487 329 ----SDVPAAGDEFI 339 (587)
T ss_pred ----CCCCCCCCEEE
Confidence 333 5677664
No 68
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=3.6e-27 Score=257.35 Aligned_cols=233 Identities=22% Similarity=0.256 Sum_probs=177.4
Q ss_pred hcccccccccccccCCeEEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhH
Q psy15197 221 MRIVPLEGIASALNRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTR 300 (902)
Q Consensus 221 ~d~~~~~~~~~e~~rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~ 300 (902)
.|=+++| ++|||++.++...|++.++.++|+|||||+||...+.+.|..+|.+|+|||+..| +.+||.
T Consensus 56 SDWM~iE-----kqRGISVtsSVMqF~Y~~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKG-------iE~qT~ 123 (528)
T COG4108 56 SDWMEIE-----KQRGISVTSSVMQFDYADCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKG-------IEPQTL 123 (528)
T ss_pred cHHHHHH-----HhcCceEEeeEEEeccCCeEEeccCCCCccccchhHHHHHHhhheeeEEEecccC-------ccHHHH
Confidence 3445555 9999999999999999999999999999999999999999999999999999999 668999
Q ss_pred HHHHHHHHhCCCeEEEEEecCCCCCchHH-HHH-----------------------------------------------
Q psy15197 301 EHALLVRSLGVNQLGVVINKLDTVSWSQD-RFQ----------------------------------------------- 332 (902)
Q Consensus 301 ~~l~~l~~~~i~~iIVviNKiDl~~~~~~-~~~----------------------------------------------- 332 (902)
.+...|+..++| |+-++||+|....++- .+.
T Consensus 124 KLfeVcrlR~iP-I~TFiNKlDR~~rdP~ELLdEiE~~L~i~~~PitWPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~ 202 (528)
T COG4108 124 KLFEVCRLRDIP-IFTFINKLDREGRDPLELLDEIEEELGIQCAPITWPIGMGKDFKGVYHLYNDEVELYESGHTDQERR 202 (528)
T ss_pred HHHHHHhhcCCc-eEEEeeccccccCChHHHHHHHHHHhCcceecccccccCCcccceeeeeccCEEEEeccCCCccccc
Confidence 999999999987 6699999994322211 111
Q ss_pred ----------------------HHHHHHHHhhhh---cC----CCCCCceEecCCCccCCCCCCCCCCcccccccCcccH
Q psy15197 333 ----------------------EIVTKLGAFLKQ---AG----FRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCL 383 (902)
Q Consensus 333 ----------------------~i~~~l~~~l~~---~~----~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~L 383 (902)
++.++++-+... +. ..+...|+++.||+.+-|+.. +
T Consensus 203 ~~~~~~~~~p~~~~~l~~~~~~~~~ee~EL~~~a~~~Fd~~~fl~G~~TPVFFGSAl~NFGV~~---------------~ 267 (528)
T COG4108 203 ADIVKGLDNPELDALLGEDLAEQLREELELVQGAGNEFDLEAFLAGELTPVFFGSALGNFGVDH---------------F 267 (528)
T ss_pred cccccCCCChhHHhhhchHHHHHHHHHHHHHHhhccccCHHHHhcCCccceEehhhhhccCHHH---------------H
Confidence 111111110000 00 113456899999999999887 7
Q ss_pred HHHHHhcCC-CCC---------CCCCCceEEEee---EEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCcEEEEEEEEE-
Q psy15197 384 LDVIDNFKT-PSR---------PLTKPLRMSVSD---IYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYV- 449 (902)
Q Consensus 384 le~L~~l~~-p~~---------~~~~pl~~~I~~---i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~- 449 (902)
++.+-.+.| |.. +.+..|..+|++ ....+++.++++.||.||.+..|+++....+++..+++....
T Consensus 268 L~~~~~~AP~P~~~~a~~~~v~p~e~kfsGFVFKIQANMDp~HRDRIAFmRv~SGkferGMkv~h~rtGK~~~ls~~~~f 347 (528)
T COG4108 268 LDALVDWAPSPRARQADTREVEPTEDKFSGFVFKIQANMDPKHRDRIAFMRVCSGKFERGMKVTHVRTGKDVKLSDALTF 347 (528)
T ss_pred HHHHHhhCCCCCcccCCcCcccCCCCccceEEEEEEcCCCcccccceeEEEeccccccCCceeeeeecCCceEecchHhh
Confidence 777766543 321 113334444544 466788999999999999999999999999998888776542
Q ss_pred ---ceEeeeeeccCCeEEEeeeccccccceeeccccCCC
Q psy15197 450 ---DEMSVSAAYAGDNVSVTLLNYDQQNVSVGFLLSELS 485 (902)
Q Consensus 450 ---~~~~v~~a~aGdiv~I~l~~~~~~~i~kG~vL~~~~ 485 (902)
.++.+++|.|||+++|.-. ..++.|++++...
T Consensus 348 ~A~dRe~ve~A~aGDIIGl~nh----G~~~IGDT~t~Ge 382 (528)
T COG4108 348 MAQDRETVEEAYAGDIIGLHNH----GTIQIGDTFTEGE 382 (528)
T ss_pred hhhhhhhhhhccCCCeEeccCC----CceeecceeecCc
Confidence 7788999999999998543 6789999998754
No 69
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.94 E-value=2.8e-26 Score=235.96 Aligned_cols=135 Identities=40% Similarity=0.672 Sum_probs=116.6
Q ss_pred cccCCeEEeeeEEEEE--ECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh
Q psy15197 232 ALNRGITMDVGQSQFE--TKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL 309 (902)
Q Consensus 232 e~~rGiTid~~~~~~~--~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~ 309 (902)
|+++|+|++.....+. +.++.++|||||||.+|.+.+..++..+|++|+|||+.+| ...++.+++..+...
T Consensus 49 e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g-------~~~~~~~~l~~~~~~ 121 (188)
T PF00009_consen 49 ERERGITIDLSFISFEKNENNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDG-------IQPQTEEHLKILREL 121 (188)
T ss_dssp HHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTB-------STHHHHHHHHHHHHT
T ss_pred hhhcccccccccccccccccccceeecccccccceeecccceecccccceeeeecccc-------ccccccccccccccc
Confidence 3789999999999999 9999999999999999999999999999999999999998 447999999999999
Q ss_pred CCCeEEEEEecCCCCCchHHHHHHHHHHHH-HhhhhcCCCC-CCceEecCCCccCCCCCCCCCCcccccccCcccHHHHH
Q psy15197 310 GVNQLGVVINKLDTVSWSQDRFQEIVTKLG-AFLKQAGFRD-SDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVI 387 (902)
Q Consensus 310 ~i~~iIVviNKiDl~~~~~~~~~~i~~~l~-~~l~~~~~~~-~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L 387 (902)
++| +|||+||||+. ..++.++.+++. .+++..++.. ..+|++++||++|.|+.+ |++.|
T Consensus 122 ~~p-~ivvlNK~D~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~---------------Ll~~l 182 (188)
T PF00009_consen 122 GIP-IIVVLNKMDLI---EKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDE---------------LLEAL 182 (188)
T ss_dssp T-S-EEEEEETCTSS---HHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHH---------------HHHHH
T ss_pred ccc-eEEeeeeccch---hhhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHH---------------HHHHH
Confidence 988 77999999998 456666777666 5567777654 468999999999999998 88888
Q ss_pred HhcCC
Q psy15197 388 DNFKT 392 (902)
Q Consensus 388 ~~l~~ 392 (902)
.++.|
T Consensus 183 ~~~~P 187 (188)
T PF00009_consen 183 VELLP 187 (188)
T ss_dssp HHHS-
T ss_pred HHhCc
Confidence 76654
No 70
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.94 E-value=1.8e-25 Score=268.00 Aligned_cols=215 Identities=22% Similarity=0.303 Sum_probs=162.5
Q ss_pred CCeEEeeeEEEEEE----CCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhC
Q psy15197 235 RGITMDVGQSQFET----KTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLG 310 (902)
Q Consensus 235 rGiTid~~~~~~~~----~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~ 310 (902)
+|+|++.....+.+ .++.++|||||||..|...+..++..+|++|||||+++|. ..++.+++..+...+
T Consensus 275 ~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv-------~~QT~E~I~~~k~~~ 347 (742)
T CHL00189 275 GGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGV-------KPQTIEAINYIQAAN 347 (742)
T ss_pred CccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCC-------ChhhHHHHHHHHhcC
Confidence 45565554444443 3589999999999999999999999999999999999984 468999998888888
Q ss_pred CCeEEEEEecCCCCCchHHHHHHHHHHHHHh---hhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCcccHHHHH
Q psy15197 311 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAF---LKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVI 387 (902)
Q Consensus 311 i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~---l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L 387 (902)
+| +||++||+|+...+.. ++.+++... ....+ ..++++++||++|.||.+ |++.|
T Consensus 348 iP-iIVViNKiDl~~~~~e---~v~~eL~~~~ll~e~~g---~~vpvv~VSAktG~GIde---------------Lle~I 405 (742)
T CHL00189 348 VP-IIVAINKIDKANANTE---RIKQQLAKYNLIPEKWG---GDTPMIPISASQGTNIDK---------------LLETI 405 (742)
T ss_pred ce-EEEEEECCCccccCHH---HHHHHHHHhccchHhhC---CCceEEEEECCCCCCHHH---------------HHHhh
Confidence 76 7799999999753322 222222211 11111 236899999999999998 55555
Q ss_pred HhcC---CCCCCCCCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCcEEEEEEEE-EceEeeeeeccCCeE
Q psy15197 388 DNFK---TPSRPLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVY-VDEMSVSAAYAGDNV 463 (902)
Q Consensus 388 ~~l~---~p~~~~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~-~~~~~v~~a~aGdiv 463 (902)
..+. ......+.|+...|.++..+++.|+|++|+|.+|+|+.||.|.+++ ...+|+++. ....++.+|.||++|
T Consensus 406 ~~l~e~~~lk~~~~~~~~g~V~e~~iD~~~G~V~~~~V~sGtLr~GD~vv~g~--~~gkVr~m~~~~~~~v~~a~pgdiV 483 (742)
T CHL00189 406 LLLAEIEDLKADPTQLAQGIILEAHLDKTKGPVATILVQNGTLHIGDIIVIGT--SYAKIRGMINSLGNKINLATPSSVV 483 (742)
T ss_pred hhhhhhhcccCCCCCCceEEEEEEEEcCCCceEEEEEEEcCEEecCCEEEECC--cceEEEEEEcCCCcCccEEcCCCce
Confidence 4332 2223345788999999999999999999999999999999999988 346888887 456789999999999
Q ss_pred EEeeeccccccceeeccccC
Q psy15197 464 SVTLLNYDQQNVSVGFLLSE 483 (902)
Q Consensus 464 ~I~l~~~~~~~i~kG~vL~~ 483 (902)
.|.+.. ...+.|++|..
T Consensus 484 ~I~gl~---~~~~~Gd~l~v 500 (742)
T CHL00189 484 EIWGLS---SVPATGEHFQV 500 (742)
T ss_pred EecCcc---cCCCCCCEEEE
Confidence 887752 34456776653
No 71
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.94 E-value=2.2e-25 Score=275.57 Aligned_cols=241 Identities=23% Similarity=0.330 Sum_probs=160.8
Q ss_pred ccCCeEEeeeEEEEEEC----------------CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCc
Q psy15197 233 LNRGITMDVGQSQFETK----------------TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESG 296 (902)
Q Consensus 233 ~~rGiTid~~~~~~~~~----------------~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~ 296 (902)
++||+|++.+..++.|. ++.|+|||||||.+|..++..+++.+|++|+|||+.+| +.
T Consensus 64 ~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~G-------v~ 136 (843)
T PLN00116 64 AERGITIKSTGISLYYEMTDESLKDFKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-------VC 136 (843)
T ss_pred HHhCCceecceeEEEeecccccccccccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCC-------Cc
Confidence 67777777776666663 78899999999999999999999999999999999999 44
Q ss_pred hhhHHHHHHHHHhCCCeEEEEEecCCCCC----ch----HHHHHHHHHHHHHhhhhcC--------CCCCCceEecCCCc
Q psy15197 297 GQTREHALLVRSLGVNQLGVVINKLDTVS----WS----QDRFQEIVTKLGAFLKQAG--------FRDSDIEYVPCSGL 360 (902)
Q Consensus 297 ~qt~~~l~~l~~~~i~~iIVviNKiDl~~----~~----~~~~~~i~~~l~~~l~~~~--------~~~~~~~ii~iSA~ 360 (902)
.+++.++..+...++| +|+++||||+.- .+ ...+.+++++++..+..++ +.+..-.+++.|++
T Consensus 137 ~~t~~~~~~~~~~~~p-~i~~iNK~D~~~~~~~~~~~~~~~~~~~vi~~in~~~~~~~~~~~~~~~~~P~~~nv~F~s~~ 215 (843)
T PLN00116 137 VQTETVLRQALGERIR-PVLTVNKMDRCFLELQVDGEEAYQTFSRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGL 215 (843)
T ss_pred ccHHHHHHHHHHCCCC-EEEEEECCcccchhhcCCHHHHHHHHHHHHHHHHHHHHhccccccCceEEccCCCeeeeeecc
Confidence 7999999999988887 459999999862 11 1456777777763333221 11111223445554
Q ss_pred cCCCCCCC------------------------------------CC--Cc------------------------------
Q psy15197 361 TGENLTTP------------------------------------SQ--VP------------------------------ 372 (902)
Q Consensus 361 ~G~gI~~~------------------------------------~~--~~------------------------------ 372 (902)
.|..+.-+ .. .+
T Consensus 216 ~~~~~~l~~~~~~y~~~~~~~~~~l~~~lwg~~~~~~~~~~~~~~~~~~~~~~~~f~~~il~~~~~l~e~v~~~d~~lle 295 (843)
T PLN00116 216 HGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKWTTKNTGSPTCKRGFVQFCYEPIKQIINTCMNDQKDKLW 295 (843)
T ss_pred cCEEEEhHHHHHHHHHHhCCcHHHHHHHhhccceEcCCCceEEecCCCCchhhHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 33111100 00 00
Q ss_pred -------------------------ccccccCc-ccHHHHHHh-cCCCCC-------------------------CCCCC
Q psy15197 373 -------------------------ALTSWYSG-PCLLDVIDN-FKTPSR-------------------------PLTKP 400 (902)
Q Consensus 373 -------------------------~~~~w~~g-~~Lle~L~~-l~~p~~-------------------------~~~~p 400 (902)
.+.+|+.+ ..|++.+.. +|.|.. ..+.|
T Consensus 296 ~~l~~~~~~l~~~el~~~~~~l~~~~~~pv~~~s~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p 375 (843)
T PLN00116 296 PMLEKLGVTLKSDEKELMGKALMKRVMQTWLPASDALLEMIIFHLPSPAKAQRYRVENLYEGPLDDKYATAIRNCDPNGP 375 (843)
T ss_pred HHHHhCCCCCCHHHHhhhhHHHHHHHHHhhcCChHHHHHHHHHhCCChHHhhhHHhhhccCCCCCccccchhhcCCCCCC
Confidence 00112222 234444433 444420 11358
Q ss_pred ceEEEeeEEeeCCCeE-EEEEEEEeeEeeCCCEEEEccC----CcE-----EEEEEEEE----ceEeeeeeccCCeEEEe
Q psy15197 401 LRMSVSDIYKSTGSGY-CIAGRVETGVILAGEKVMVQPQ----NEV-----TTVKAVYV----DEMSVSAAYAGDNVSVT 466 (902)
Q Consensus 401 l~~~I~~i~~v~g~G~-V~~GrV~sG~Lk~Gd~v~l~p~----~~~-----~~V~sI~~----~~~~v~~a~aGdiv~I~ 466 (902)
+.+.|++++..++.|. ++++||++|+|+.|+.|++... +.. .+|..|.. ...+++++.|||+++|.
T Consensus 376 l~a~VfK~~~~~~~g~~l~~~RVysGtL~~g~~v~v~~~n~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~AGdI~ai~ 455 (843)
T PLN00116 376 LMLYVSKMIPASDKGRFFAFGRVFSGTVATGMKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQESVEDVPCGNTVAMV 455 (843)
T ss_pred eEEEEEeeeecCCCCeEEEEEEEEeeeecCCCEEEEeCCCCCCCCccccceeEhheEEEecCCCceECcEECCCCEEEEE
Confidence 9999999998888887 9999999999999999985322 111 35555553 45789999999999998
Q ss_pred eecccccc-ceeeccccCCC
Q psy15197 467 LLNYDQQN-VSVGFLLSELS 485 (902)
Q Consensus 467 l~~~~~~~-i~kG~vL~~~~ 485 (902)
+. ++ +.+|++|+...
T Consensus 456 gl----~~~~~~gdTL~~~~ 471 (843)
T PLN00116 456 GL----DQFITKNATLTNEK 471 (843)
T ss_pred ee----cccccCCceecCCc
Confidence 85 33 34588886543
No 72
>PTZ00416 elongation factor 2; Provisional
Probab=99.93 E-value=7.3e-25 Score=270.44 Aligned_cols=240 Identities=23% Similarity=0.321 Sum_probs=160.9
Q ss_pred ccCCeEEeeeEEEEEEC----------CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHH
Q psy15197 233 LNRGITMDVGQSQFETK----------TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREH 302 (902)
Q Consensus 233 ~~rGiTid~~~~~~~~~----------~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~ 302 (902)
++||+|++.+...+.|. ++.|+|||||||.+|...+..+++.+|++|+|||+.+|+ ..|++.+
T Consensus 64 ~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~-------~~~t~~~ 136 (836)
T PTZ00416 64 QERGITIKSTGISLYYEHDLEDGDDKQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGV-------CVQTETV 136 (836)
T ss_pred HhhcceeeccceEEEeecccccccCCCceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCc-------CccHHHH
Confidence 78888888877777775 678999999999999999999999999999999999994 4689999
Q ss_pred HHHHHHhCCCeEEEEEecCCCC----Cch----HHHHHHHHHHHHHhhhhc--------CCCCCCceEecCCCccCCCCC
Q psy15197 303 ALLVRSLGVNQLGVVINKLDTV----SWS----QDRFQEIVTKLGAFLKQA--------GFRDSDIEYVPCSGLTGENLT 366 (902)
Q Consensus 303 l~~l~~~~i~~iIVviNKiDl~----~~~----~~~~~~i~~~l~~~l~~~--------~~~~~~~~ii~iSA~~G~gI~ 366 (902)
+..+...++| +|+++||||+. ..+ ...+..++++++..+..+ .+.+....+.+.|+..|++..
T Consensus 137 ~~~~~~~~~p-~iv~iNK~D~~~~~~~~~~~~~~~~~~~ii~~in~~l~~~~~~~~~~~~~~p~~~~vp~~s~~~~~~f~ 215 (836)
T PTZ00416 137 LRQALQERIR-PVLFINKVDRAILELQLDPEEIYQNFVKTIENVNVIIATYNDELMGDVQVYPEKGTVAFGSGLQGWAFT 215 (836)
T ss_pred HHHHHHcCCC-EEEEEEChhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHhcccccccceecceeccEEEEEeccccceee
Confidence 9988888876 56999999986 211 235667777777665422 112111223344444221100
Q ss_pred ---------------C---------------------CCCCcc------------------------------cc-----
Q psy15197 367 ---------------T---------------------PSQVPA------------------------------LT----- 375 (902)
Q Consensus 367 ---------------~---------------------~~~~~~------------------------------~~----- 375 (902)
. ....+. ++
T Consensus 216 ~~~F~~~y~~~~~~~~~~l~~~~wg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~e~~~~~dd~lle~~l~ 295 (836)
T PTZ00416 216 LTTFARIYAKKFGVEESKMMERLWGDNFFDAKTKKWIKDETNAQGKKLKRAFCQFILDPICQLFDAVMNEDKEKYDKMLK 295 (836)
T ss_pred hHHhhhhhhhhcCCcHHHHHHHHhccccccCCCCEEEeccCCccccccchHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 0 000000 00
Q ss_pred ------------------------cccC-cccHHHHHH-hcCCCCC-------------------------CCCCCceEE
Q psy15197 376 ------------------------SWYS-GPCLLDVID-NFKTPSR-------------------------PLTKPLRMS 404 (902)
Q Consensus 376 ------------------------~w~~-g~~Lle~L~-~l~~p~~-------------------------~~~~pl~~~ 404 (902)
.|+. -..|++.+. .+|.|.. ..+.|+.+.
T Consensus 296 ~~~~~l~~~e~~~~~~~l~~~~~~~~~Pv~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~plva~ 375 (836)
T PTZ00416 296 SLNISLTGEDKELTGKPLLKAVMQKWLPAADTLLEMIVDHLPSPKEAQKYRVENLYEGPMDDEAANAIRNCDPNGPLMMY 375 (836)
T ss_pred HcCCCcChHHhccChHHHHHHHHHHHhchHHHHHHHHHHhCCChhHhCchhhhccccCCCCccccceeeccCCCCCeEEE
Confidence 0000 012333333 3444421 113578999
Q ss_pred EeeEEeeCCCeE-EEEEEEEeeEeeCCCEEEEccCC----cEE-----EEEEEEE----ceEeeeeeccCCeEEEeeecc
Q psy15197 405 VSDIYKSTGSGY-CIAGRVETGVILAGEKVMVQPQN----EVT-----TVKAVYV----DEMSVSAAYAGDNVSVTLLNY 470 (902)
Q Consensus 405 I~~i~~v~g~G~-V~~GrV~sG~Lk~Gd~v~l~p~~----~~~-----~V~sI~~----~~~~v~~a~aGdiv~I~l~~~ 470 (902)
|+++...++.|. ++++||+||+|+.|+.|++...+ ... +|..|.. ...++++|.||++|+|.+.
T Consensus 376 VfK~~~~~~~g~~~s~~RV~SGtL~~g~~v~v~~~~~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~v~AGdI~~i~gl-- 453 (836)
T PTZ00416 376 ISKMVPTSDKGRFYAFGRVFSGTVATGQKVRIQGPNYVPGKKEDLFEKNIQRTVLMMGRYVEQIEDVPCGNTVGLVGV-- 453 (836)
T ss_pred EEeeeecCCCCcEEEEEEEEeeeecCCCEEEEeCCCCCCCCcccchheecceeEEecCCCceECcEECCCCEEEEEec--
Confidence 999999999998 89999999999999999853321 112 3556653 5678999999999999875
Q ss_pred cccc--ceeeccccCCC
Q psy15197 471 DQQN--VSVGFLLSELS 485 (902)
Q Consensus 471 ~~~~--i~kG~vL~~~~ 485 (902)
++ .+.| +|+...
T Consensus 454 --~~~~~~tg-TL~~~~ 467 (836)
T PTZ00416 454 --DQYLVKSG-TITTSE 467 (836)
T ss_pred --ccceecce-eecCCC
Confidence 34 6788 775443
No 73
>KOG0465|consensus
Probab=99.93 E-value=4.8e-26 Score=256.32 Aligned_cols=234 Identities=24% Similarity=0.320 Sum_probs=184.5
Q ss_pred hhhhcccccccccccccCCeEEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCch
Q psy15197 218 CLVMRIVPLEGIASALNRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGG 297 (902)
Q Consensus 218 ~~~~d~~~~~~~~~e~~rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~ 297 (902)
..+||++++| +.||||+.....++.|.++.|++||||||.||.-++.++++.-|++|+|+|+..| ++.
T Consensus 76 ~a~md~m~~e-----r~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~G-------Vqs 143 (721)
T KOG0465|consen 76 GATMDSMELE-----RQRGITIQSAATYFTWRDYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAG-------VES 143 (721)
T ss_pred ceeeehHHHH-----HhcCceeeeceeeeeeccceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccc-------eeh
Confidence 4578888888 9999999999999999999999999999999999999999999999999999999 558
Q ss_pred hhHHHHHHHHHhCCCeEEEEEecCCCCCch--------------------------------------------------
Q psy15197 298 QTREHALLVRSLGVNQLGVVINKLDTVSWS-------------------------------------------------- 327 (902)
Q Consensus 298 qt~~~l~~l~~~~i~~iIVviNKiDl~~~~-------------------------------------------------- 327 (902)
|+...++.++..++|.+ .++||||....+
T Consensus 144 Qt~tV~rQ~~ry~vP~i-~FiNKmDRmGa~~~~~l~~i~~kl~~~~a~vqiPig~e~~f~GvvDlv~~kai~~~g~~g~~ 222 (721)
T KOG0465|consen 144 QTETVWRQMKRYNVPRI-CFINKMDRMGASPFRTLNQIRTKLNHKPAVVQIPIGSESNFKGVVDLVNGKAIYWDGENGEI 222 (721)
T ss_pred hhHHHHHHHHhcCCCeE-EEEehhhhcCCChHHHHHHHHhhcCCchheeEccccccccchhHHhhhhceEEEEcCCCCce
Confidence 99999999999999865 999999911111
Q ss_pred ------HH--------HHHHHHHH----------------------HHHhhhhcCCCCCCceEecCCCccCCCCCCCCCC
Q psy15197 328 ------QD--------RFQEIVTK----------------------LGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQV 371 (902)
Q Consensus 328 ------~~--------~~~~i~~~----------------------l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~ 371 (902)
++ ..+++++. +...+++.-+...-+|+++.||+++.|+..
T Consensus 223 i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee~~ps~~~l~~aIRr~Ti~r~fvPVl~GSAlKNkGVQP---- 298 (721)
T KOG0465|consen 223 VRKDEIPEDLEELAEEKRQALIETLADVDETLAEMFLEEEEPSAQQLKAAIRRATIKRSFVPVLCGSALKNKGVQP---- 298 (721)
T ss_pred eEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCCCCHHHHHHHHHHHHhhcceeeEEechhhcccCcch----
Confidence 00 01111111 111111111223347999999999999997
Q ss_pred cccccccCcccHHHHH-HhcCCCCC--------------------CCCC-CceEEEeeEEeeCCCeEEEEEEEEeeEeeC
Q psy15197 372 PALTSWYSGPCLLDVI-DNFKTPSR--------------------PLTK-PLRMSVSDIYKSTGSGYCIAGRVETGVILA 429 (902)
Q Consensus 372 ~~~~~w~~g~~Lle~L-~~l~~p~~--------------------~~~~-pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~ 429 (902)
|++++ +.+|.|.. ..++ ||....+++...+. |...+.||++|+|+.
T Consensus 299 -----------lLDAVvdYLPsP~Ev~n~a~~ke~~~~ekv~l~~~~d~~Pfv~LAFKle~g~f-GqLTyvRvYqG~L~k 366 (721)
T KOG0465|consen 299 -----------LLDAVVDYLPSPSEVENYALNKETNSKEKVTLSPSRDKDPFVALAFKLEEGRF-GQLTYVRVYQGTLSK 366 (721)
T ss_pred -----------HHHHHHHhCCChhhhcccccccCCCCccceEeccCCCCCceeeeEEEeeecCc-cceEEEEEeeeeecC
Confidence 66655 44544420 0123 99999999998888 999999999999999
Q ss_pred CCEEEEccCCcEEEEEEEEE----ceEeeeeeccCCeEEEeeeccccccceeeccccCCC
Q psy15197 430 GEKVMVQPQNEVTTVKAVYV----DEMSVSAAYAGDNVSVTLLNYDQQNVSVGFLLSELS 485 (902)
Q Consensus 430 Gd~v~l~p~~~~~~V~sI~~----~~~~v~~a~aGdiv~I~l~~~~~~~i~kG~vL~~~~ 485 (902)
|+.|+...++++.++..+.. ..++|+++.||||+++.+. ++..|+++.+..
T Consensus 367 G~~iyN~rtgKKvrv~RL~rmHa~~medV~~v~AG~I~alfGi-----dcasGDTftd~~ 421 (721)
T KOG0465|consen 367 GDTIYNVRTGKKVRVGRLVRMHANDMEDVNEVLAGDICALFGI-----DCASGDTFTDKQ 421 (721)
T ss_pred CcEEEecCCCceeEhHHHhHhcccccchhhhhhccceeeeecc-----ccccCceeccCc
Confidence 99999999999998887654 4568999999999999884 778899998763
No 74
>KOG0052|consensus
Probab=99.93 E-value=2.4e-26 Score=250.93 Aligned_cols=300 Identities=42% Similarity=0.688 Sum_probs=246.2
Q ss_pred CCCcceEEEEEecCCCChhHHHhHHHHhccccchhhhccchhhhhhcccccceeeeeccccCcccccCCccccCCCCCCC
Q psy15197 22 GGKGRLHLVVIGHVDAGKSTLMGHLLYLMGRVSAREIHKHETESKKLGKQSFMYAWILDETGEESSCEIPVDTTSAGNPV 101 (902)
Q Consensus 22 ~~~~~~~v~v~G~~~~GKstL~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 101 (902)
+.+.++||+|+||+++||||+.. ++||.|+.|+++|++++++++|+++|+|+|++|+...|
T Consensus 3 ~~~~~~ni~~i~h~~s~~stt~~---~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae---------------- 63 (391)
T KOG0052|consen 3 KEKIHINIVVIGHVDSGKSTTTG---YKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAE---------------- 63 (391)
T ss_pred CcccccceEEEEeeeeeeeEEEe---eecccccchhhhhhchHHHhhccceeeeeeeechhhhc----------------
Confidence 35678999999999999999998 88999999999999999999999999999999988865
Q ss_pred CccccccccCCCCCCCCcchhhhhccccccCCCCccchhcccCCCCccccccchhhhccCCCCCCCCCcccccccccccc
Q psy15197 102 DSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFEDRETIIKTIGPHGPVPLEDTYYLDKLFHF 181 (902)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (902)
T Consensus 64 -------------------------------------------------------------------------------- 63 (391)
T KOG0052|consen 64 -------------------------------------------------------------------------------- 63 (391)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCcccccccCCCCccccceecccCCccchhhhhhhhhcccccccccccccCCeEEeeeEEEEEECCeEEEEEeCCCc
Q psy15197 182 SGERNPERVVHAKGGGAFGYFEVRKLPAGVVKIEFACLVMRIVPLEGIASALNRGITMDVGQSQFETKTKYITLLDAPGH 261 (902)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~e~~rGiTid~~~~~~~~~~~~i~lIDTPG~ 261 (902)
++||+|++.....+....+.+++||.|||
T Consensus 64 ---------------------------------------------------~~r~i~I~~~l~~~~t~k~~i~iid~pgh 92 (391)
T KOG0052|consen 64 ---------------------------------------------------RERGITIDIALWKFETSKYYVTIIDAPGH 92 (391)
T ss_pred ---------------------------------------------------cccceEEEEEeecccceeEEEEEecCCCC
Confidence 45678888888888889999999999999
Q ss_pred cchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCC--chHHHHHHHHHHHH
Q psy15197 262 KDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVS--WSQDRFQEIVTKLG 339 (902)
Q Consensus 262 ~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~--~~~~~~~~i~~~l~ 339 (902)
.+|.+.|+.+..+||+++++|.+..|.+|++++...|+++|..+...+++.++|+.+||||... +...+..++.++..
T Consensus 93 ~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~~~~~s~~r~~ei~k~~~ 172 (391)
T KOG0052|consen 93 RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARYEEIKKEVS 172 (391)
T ss_pred CceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccceeeeEEeecccccCCCccccchhhhheeee
Confidence 9999999999999999999999988999999999999999999999999999999999999754 33334444333222
Q ss_pred HhhhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCcccHHHHHHhcCCCCCCCCCCceEEEeeEEeeCCCeEEEE
Q psy15197 340 AFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNFKTPSRPLTKPLRMSVSDIYKSTGSGYCIA 419 (902)
Q Consensus 340 ~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L~~l~~p~~~~~~pl~~~I~~i~~v~g~G~V~~ 419 (902)
...+..++ +.. +. ..+++...+.|
T Consensus 173 ~~~~~~g~----------------n~~------------------~~------------------~~~~~~~~g~~---- 196 (391)
T KOG0052|consen 173 SYIKKIGY----------------NPA------------------AV------------------LQDVYKIGGIG---- 196 (391)
T ss_pred eeeecccc----------------CCh------------------hh------------------hccceeeccee----
Confidence 11111111 111 11 23445555555
Q ss_pred EEEEeeEeeCCCEEEEccCCcEEEEEEEEEceEeeeeeccCCeEEEeeeccccccceeeccccCCCC-CCCCcccceeee
Q psy15197 420 GRVETGVILAGEKVMVQPQNEVTTVKAVYVDEMSVSAAYAGDNVSVTLLNYDQQNVSVGFLLSELSH-PCPVSSKFEARI 498 (902)
Q Consensus 420 GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~~~~~v~~a~aGdiv~I~l~~~~~~~i~kG~vL~~~~~-~~~~~~~F~a~i 498 (902)
+..|.++.++.+...+.....++.++.+++...+++.+|+.++....++..+++++|.++.+... |+.....|.+++
T Consensus 197 --~~t~iie~~~~v~~~~~~~~~~vk~~~~~~~a~s~~~p~~~vG~~~~~v~v~~i~~gnV~~dsK~~p~~~~~g~t~qv 274 (391)
T KOG0052|consen 197 --VETGISEPGMDVTFAPSGVTTEVKSVKVHHEAGSEDLPGDNVGFNVKNVSVKDIDRGNVVGDSKNDPPVEAAGFTAQV 274 (391)
T ss_pred --eeeeeccCccceeccccccccccccEEEEeccCccCCCcceeeeecccCccCcccccceecccccCCccccccceeeE
Confidence 88899999999999888888899999999888888999999999999999999999999988765 444456899999
Q ss_pred eeecccCCcccccc-eec--chhhhhh-hheeccc
Q psy15197 499 VVFNITTPITIGYP-VTH--DITHLTK-AAIFSEI 529 (902)
Q Consensus 499 rvvHakg~ga~G~f-v~~--~is~~~~-A~if~~~ 529 (902)
.+++++|.+..||- +.. .....|+ |.+..++
T Consensus 275 iilnhpgqis~gy~pvldcht~hiacKfael~~Ki 309 (391)
T KOG0052|consen 275 IILNHPGQISVGYAPVLDCHTAHIACKFAELKEKI 309 (391)
T ss_pred EEecCccccCCCccccccccccceeeehhhchhhh
Confidence 99999999999998 654 3444565 5555443
No 75
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.92 E-value=2.2e-23 Score=247.61 Aligned_cols=182 Identities=27% Similarity=0.421 Sum_probs=140.9
Q ss_pred EEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCC-Cch----
Q psy15197 253 ITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTV-SWS---- 327 (902)
Q Consensus 253 i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~-~~~---- 327 (902)
++|||||||++|...+..+++.+|++|||+|+++| ...++.+++.++...++| +|+++||+|+. .|.
T Consensus 73 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g-------~~~qt~e~i~~~~~~~vp-iIvviNK~D~~~~~~~~~~ 144 (586)
T PRK04004 73 LLFIDTPGHEAFTNLRKRGGALADIAILVVDINEG-------FQPQTIEAINILKRRKTP-FVVAANKIDRIPGWKSTED 144 (586)
T ss_pred EEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCC-------CCHhHHHHHHHHHHcCCC-EEEEEECcCCchhhhhhcC
Confidence 89999999999999999999999999999999988 346888888888888877 77999999985 232
Q ss_pred --------------HHHHHHHHHHHHHhhhhcCCCC----------CCceEecCCCccCCCCCCCCCCcccccccCcccH
Q psy15197 328 --------------QDRFQEIVTKLGAFLKQAGFRD----------SDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCL 383 (902)
Q Consensus 328 --------------~~~~~~i~~~l~~~l~~~~~~~----------~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~L 383 (902)
...+.+...++...|...++.. ..++++++||++|+|+.+ |
T Consensus 145 ~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~d---------------L 209 (586)
T PRK04004 145 APFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPD---------------L 209 (586)
T ss_pred chHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHH---------------H
Confidence 1223333444445555555432 357899999999999988 4
Q ss_pred HHHHH----h-cCCC-CCCCCCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCc--EEEEEEEEEceEeee
Q psy15197 384 LDVID----N-FKTP-SRPLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNE--VTTVKAVYVDEMSVS 455 (902)
Q Consensus 384 le~L~----~-l~~p-~~~~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~--~~~V~sI~~~~~~v~ 455 (902)
++.+. . ++.+ ....+.|++++|.+++.+++.|+|++|+|.+|+|++||.|.+++.+. .++|+++.... +++
T Consensus 210 l~~i~~~~~~~l~~~l~~~~~~~~~~~V~ev~~~~g~G~v~~~~v~~GtL~~Gd~vv~~~~~~~i~~kVr~l~~~~-~~~ 288 (586)
T PRK04004 210 LMVLAGLAQRYLEERLKIDVEGPGKGTVLEVKEERGLGTTIDVILYDGTLRKGDTIVVGGKDGPIVTKVRALLKPR-PLD 288 (586)
T ss_pred HHHHHHHHHHHHHHhhccCCCCCeEEEEEEEEEeCCCceEEEEEEEcCEEECCCEEEECcCCCcceEEEEEEecCc-chh
Confidence 44432 2 2222 23457899999999999999999999999999999999999999874 46899988653 444
Q ss_pred eec
Q psy15197 456 AAY 458 (902)
Q Consensus 456 ~a~ 458 (902)
++.
T Consensus 289 e~~ 291 (586)
T PRK04004 289 EMR 291 (586)
T ss_pred hcc
Confidence 444
No 76
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.91 E-value=3.4e-23 Score=244.99 Aligned_cols=176 Identities=26% Similarity=0.452 Sum_probs=133.2
Q ss_pred EEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCC-chH--
Q psy15197 252 YITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVS-WSQ-- 328 (902)
Q Consensus 252 ~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~-~~~-- 328 (902)
.++|||||||++|...+..+++.+|++|||+|++++. ..++.+++.++...++| +|+++||+|+.+ |..
T Consensus 70 ~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~-------~~qt~e~i~~l~~~~vp-iIVv~NK~Dl~~~~~~~~ 141 (590)
T TIGR00491 70 GLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGF-------KPQTQEALNILRMYKTP-FVVAANKIDRIPGWRSHE 141 (590)
T ss_pred cEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCC-------CHhHHHHHHHHHHcCCC-EEEEEECCCccchhhhcc
Confidence 5899999999999999999999999999999999883 36888888888888876 779999999963 211
Q ss_pred ------------HH----HHHHHHHHHHhhhhcCCC----------CCCceEecCCCccCCCCCCCCCCcccccccCccc
Q psy15197 329 ------------DR----FQEIVTKLGAFLKQAGFR----------DSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPC 382 (902)
Q Consensus 329 ------------~~----~~~i~~~l~~~l~~~~~~----------~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~ 382 (902)
.. +.+....+...+...++. ...++++++||++|+|+++
T Consensus 142 ~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGide--------------- 206 (590)
T TIGR00491 142 GRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPE--------------- 206 (590)
T ss_pred CchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhH---------------
Confidence 00 001111111123333332 2357999999999999998
Q ss_pred HHHHHHh----cC-CC-CCCCCCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCc--EEEEEEEEEc
Q psy15197 383 LLDVIDN----FK-TP-SRPLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNE--VTTVKAVYVD 450 (902)
Q Consensus 383 Lle~L~~----l~-~p-~~~~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~--~~~V~sI~~~ 450 (902)
|++.|.. .. .. ....+.|+++.|.+++.++|.|+|++|.|.+|+|++||.|.++|.+. ..+|+++...
T Consensus 207 Ll~~l~~l~~~~l~~~l~~~~~~~~~~~V~e~~~~~G~G~v~t~~v~~G~l~~GD~iv~~~~~~~i~~kVr~l~~~ 282 (590)
T TIGR00491 207 LLTMLAGLAQQYLEEQLKLEEEGPARGTILEVKEETGLGMTIDAVIYDGILRKGDTIAMAGSDDVIVTRVRALLKP 282 (590)
T ss_pred HHHHHHHHHHHHhhhhhccCCCCCeEEEEEEEEEcCCCceEEEEEEEcCEEeCCCEEEEccCCCcccEEEEEecCC
Confidence 5554422 11 11 22457899999999999999999999999999999999999999875 5788888753
No 77
>KOG0466|consensus
Probab=99.91 E-value=3.9e-25 Score=230.74 Aligned_cols=326 Identities=19% Similarity=0.311 Sum_probs=245.0
Q ss_pred CCccchhHHHHHHHHHHHhcCCCcceEEEEEecCCCChhHHHhHHHHhccccchhhhccchhhhhhcccccceeeeeccc
Q psy15197 2 EGKVNKDKLKKIEEYTREQAGGKGRLHLVVIGHVDAGKSTLMGHLLYLMGRVSAREIHKHETESKKLGKQSFMYAWILDE 81 (902)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~G~~~~GKstL~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (902)
|+++.+-.+.++.....+.+++++++||+-|||+.+||||++.++. |.+..++
T Consensus 14 ~qdl~~ldv~~l~pls~evisRQATiNIGTIGHVAHGKSTvVkAiS---------------------Gv~TvrF------ 66 (466)
T KOG0466|consen 14 EQDLTKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAIS---------------------GVHTVRF------ 66 (466)
T ss_pred hhhccccChhhcCCCCHHHhhheeeeeecceeccccCcceeeeeec---------------------cceEEEe------
Confidence 5677777888888888999999999999999999999999999884 2222222
Q ss_pred cCcccccCCccccCCCCCCCCccccccccCCCCCCCCcchhhhhccccccCCCCccchhcccCCCCccccccchhhhccC
Q psy15197 82 TGEESSCEIPVDTTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFEDRETIIKTI 161 (902)
Q Consensus 82 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (902)
+.|.+|.||+..
T Consensus 67 -K~ELERNITIKL------------------------------------------------------------------- 78 (466)
T KOG0466|consen 67 -KNELERNITIKL------------------------------------------------------------------- 78 (466)
T ss_pred -hhhhhcceeEEe-------------------------------------------------------------------
Confidence 344455666553
Q ss_pred CCCCCCCCcccccccccccccCCCCcccccccCCCCccccceecccCCccchhhhhhhhhcccccccccccccCCeEEee
Q psy15197 162 GPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEVRKLPAGVVKIEFACLVMRIVPLEGIASALNRGITMDV 241 (902)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~e~~rGiTid~ 241 (902)
+|...|+|.|+.+.||. +.+++...++......+-. .|.+-.
T Consensus 79 ----------GYANAKIYkc~~~kCpr-------------P~cy~s~gS~k~d~~~c~~--------------~g~~~~- 120 (466)
T KOG0466|consen 79 ----------GYANAKIYKCDDPKCPR-------------PGCYRSFGSSKEDRPPCDR--------------PGCEGK- 120 (466)
T ss_pred ----------ccccceEEecCCCCCCC-------------cchhhccCCCCCCCCCccc--------------CCCCCc-
Confidence 48889999999999998 4555555544433333322 232211
Q ss_pred eEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecC
Q psy15197 242 GQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKL 321 (902)
Q Consensus 242 ~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKi 321 (902)
+.. -+.+.|+|+|||.-.+..|+.+....|+++|+|.+++.. .++||.+|+.....+..+++|++-||+
T Consensus 121 ----~kl-vRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsC------PQPQTsEHLaaveiM~LkhiiilQNKi 189 (466)
T KOG0466|consen 121 ----MKL-VRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESC------PQPQTSEHLAAVEIMKLKHIIILQNKI 189 (466)
T ss_pred ----eEE-EEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCC------CCCchhhHHHHHHHhhhceEEEEechh
Confidence 110 246889999999999999999999999999999998763 568999999888888889999999999
Q ss_pred CCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCcccHHHHH-HhcCCCCCCCCCC
Q psy15197 322 DTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVI-DNFKTPSRPLTKP 400 (902)
Q Consensus 322 Dl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L-~~l~~p~~~~~~p 400 (902)
|++.. +...+..+.+..+++... .+..|++|+||.-+.||+. +++.| ..++.|.++...|
T Consensus 190 Dli~e--~~A~eq~e~I~kFi~~t~--ae~aPiiPisAQlkyNId~---------------v~eyivkkIPvPvRdf~s~ 250 (466)
T KOG0466|consen 190 DLIKE--SQALEQHEQIQKFIQGTV--AEGAPIIPISAQLKYNIDV---------------VCEYIVKKIPVPVRDFTSP 250 (466)
T ss_pred hhhhH--HHHHHHHHHHHHHHhccc--cCCCceeeehhhhccChHH---------------HHHHHHhcCCCCccccCCC
Confidence 99863 333444455666665443 3567999999999999998 77876 5688888888899
Q ss_pred ceEEEeeEEeeCC--------CeEEEEEEEEeeEeeCCCEEEEccCC------cEEE-------EEEEEEceEeeeeecc
Q psy15197 401 LRMSVSDIYKSTG--------SGYCIAGRVETGVILAGEKVMVQPQN------EVTT-------VKAVYVDEMSVSAAYA 459 (902)
Q Consensus 401 l~~~I~~i~~v~g--------~G~V~~GrV~sG~Lk~Gd~v~l~p~~------~~~~-------V~sI~~~~~~v~~a~a 459 (902)
.++.|.+.|.+.. .|-|+.|.+..|.|++|+.+.+.|.= ...+ +.++.-++..++.|.+
T Consensus 251 prlIVIRSFDVNkPG~ev~~lkGgvaggsil~Gvlkvg~~IEiRPGiv~kd~~g~~~C~Pi~SrI~sL~AE~n~L~~AvP 330 (466)
T KOG0466|consen 251 PRLIVIRSFDVNKPGSEVDDLKGGVAGGSILKGVLKVGQEIEIRPGIVTKDENGNIKCRPIFSRIVSLFAEQNDLQFAVP 330 (466)
T ss_pred CcEEEEEeeccCCCCchhhcccCccccchhhhhhhhcCcEEEecCceeeecCCCcEEEeeHHHHHHHHHhhhccceeecC
Confidence 9999999988642 47799999999999999999998741 1222 3344446778899999
Q ss_pred CCeEEEeeec---cccccceeeccccCCCCCCCC
Q psy15197 460 GDNVSVTLLN---YDQQNVSVGFLLSELSHPCPV 490 (902)
Q Consensus 460 Gdiv~I~l~~---~~~~~i~kG~vL~~~~~~~~~ 490 (902)
|..+++.-.. +...|--.|++|+.....|..
T Consensus 331 GGLIGVGT~~DPtlcraDrlVGqVlG~~G~LP~i 364 (466)
T KOG0466|consen 331 GGLIGVGTKMDPTLCRADRLVGQVLGAVGTLPDI 364 (466)
T ss_pred CceeeeccccCcchhhhhHHHHHHHhhccCCccc
Confidence 9999887763 233444567888877776654
No 78
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=2.1e-23 Score=235.99 Aligned_cols=208 Identities=26% Similarity=0.353 Sum_probs=160.6
Q ss_pred ccCCeEEeeeEEEEEEC---CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh
Q psy15197 233 LNRGITMDVGQSQFETK---TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL 309 (902)
Q Consensus 233 ~~rGiTid~~~~~~~~~---~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~ 309 (902)
..-|||.......+.++ ...|+|||||||+-|..+..++...+|++|||||+++|. .+||.+-+..++..
T Consensus 34 EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv-------~pQTiEAI~hak~a 106 (509)
T COG0532 34 EAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGV-------MPQTIEAINHAKAA 106 (509)
T ss_pred cCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCc-------chhHHHHHHHHHHC
Confidence 35688999988888884 479999999999999999999999999999999999994 48999999999999
Q ss_pred CCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCcccHHHHHH-
Q psy15197 310 GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVID- 388 (902)
Q Consensus 310 ~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L~- 388 (902)
+.| +||++||||+++.++.+...-+.+..-..+. | ...+.++++||++|+|+++ |++.|.
T Consensus 107 ~vP-~iVAiNKiDk~~~np~~v~~el~~~gl~~E~--~-gg~v~~VpvSA~tg~Gi~e---------------LL~~ill 167 (509)
T COG0532 107 GVP-IVVAINKIDKPEANPDKVKQELQEYGLVPEE--W-GGDVIFVPVSAKTGEGIDE---------------LLELILL 167 (509)
T ss_pred CCC-EEEEEecccCCCCCHHHHHHHHHHcCCCHhh--c-CCceEEEEeeccCCCCHHH---------------HHHHHHH
Confidence 987 7799999999976655443332222111122 2 1347899999999999999 666552
Q ss_pred --hcCCCCCCCCCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCcEEEEEEEEE-ceEeeeeeccCCeEEE
Q psy15197 389 --NFKTPSRPLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYV-DEMSVSAAYAGDNVSV 465 (902)
Q Consensus 389 --~l~~p~~~~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~-~~~~v~~a~aGdiv~I 465 (902)
+...-....+.+.+..|.++-.++|.|.+++..|+.|+|+.||.+.++.... +|+.+.. ...++..+.++--+.+
T Consensus 168 ~aev~elka~~~~~a~gtviE~~~dkG~G~vatviv~~GtL~~GD~iv~g~~~g--~I~t~v~~~~~~i~~a~ps~~v~i 245 (509)
T COG0532 168 LAEVLELKANPEGPARGTVIEVKLDKGLGPVATVIVQDGTLKKGDIIVAGGEYG--RVRTMVDDLGKPIKEAGPSKPVEI 245 (509)
T ss_pred HHHHHhhhcCCCCcceEEEEEEEeccCCCceEEEEEecCeEecCCEEEEccCCC--ceEEeehhcCCCccccCCCCCeEE
Confidence 2333334557889999999999999999999999999999999999987654 3444432 3455666666655555
Q ss_pred eee
Q psy15197 466 TLL 468 (902)
Q Consensus 466 ~l~ 468 (902)
...
T Consensus 246 ~g~ 248 (509)
T COG0532 246 LGL 248 (509)
T ss_pred ecc
Confidence 443
No 79
>KOG1145|consensus
Probab=99.91 E-value=1.2e-23 Score=234.81 Aligned_cols=207 Identities=27% Similarity=0.345 Sum_probs=167.8
Q ss_pred cCCeEEeeeEEEEEE-CCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCC
Q psy15197 234 NRGITMDVGQSQFET-KTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVN 312 (902)
Q Consensus 234 ~rGiTid~~~~~~~~-~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~ 312 (902)
..|||.......+.. ++..|+|+|||||.-|..+..++...+|++||||.+.+|++ +||.+.+..++..++|
T Consensus 183 ~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVm-------pQT~EaIkhAk~A~Vp 255 (683)
T KOG1145|consen 183 AGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVM-------PQTLEAIKHAKSANVP 255 (683)
T ss_pred cCCccceeceEEEecCCCCEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCCcc-------HhHHHHHHHHHhcCCC
Confidence 357777776665554 57899999999999999999999999999999999999955 7999999999999987
Q ss_pred eEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCcccHHHHHH---h
Q psy15197 313 QLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVID---N 389 (902)
Q Consensus 313 ~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L~---~ 389 (902)
+||++||||.++.++++..+-+-...-.++.+| .++++++|||++|+|++. |.+++- .
T Consensus 256 -iVvAinKiDkp~a~pekv~~eL~~~gi~~E~~G---GdVQvipiSAl~g~nl~~---------------L~eaill~Ae 316 (683)
T KOG1145|consen 256 -IVVAINKIDKPGANPEKVKRELLSQGIVVEDLG---GDVQVIPISALTGENLDL---------------LEEAILLLAE 316 (683)
T ss_pred -EEEEEeccCCCCCCHHHHHHHHHHcCccHHHcC---CceeEEEeecccCCChHH---------------HHHHHHHHHH
Confidence 779999999988766554333222222344443 457999999999999998 666552 3
Q ss_pred cCCCCCCCCCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCcEEEEEEEE-EceEeeeeeccCCeEEEeee
Q psy15197 390 FKTPSRPLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVY-VDEMSVSAAYAGDNVSVTLL 468 (902)
Q Consensus 390 l~~p~~~~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~-~~~~~v~~a~aGdiv~I~l~ 468 (902)
++.-...+..|+...|-+..-++++|.+++..|..|+|+.|+.+..+. .-++|+++. .+..++++|.|+.-+.|.+-
T Consensus 317 ~mdLkA~p~g~~eg~VIES~vdkg~G~~aT~iVkrGTLkKG~vlV~G~--~w~KVr~l~D~nGk~i~~A~Ps~pv~V~Gw 394 (683)
T KOG1145|consen 317 VMDLKADPKGPAEGWVIESSVDKGRGPVATVIVKRGTLKKGSVLVAGK--SWCKVRALFDHNGKPIDEATPSQPVEVLGW 394 (683)
T ss_pred HhhcccCCCCCceEEEEEeeecCCccceeEEEEeccccccccEEEEec--hhhhhhhhhhcCCCCccccCCCCceEeecc
Confidence 344445568899999999999999999999999999999999988875 345777776 46789999999999998875
No 80
>COG1159 Era GTPase [General function prediction only]
Probab=99.91 E-value=5.4e-24 Score=225.95 Aligned_cols=187 Identities=23% Similarity=0.350 Sum_probs=143.4
Q ss_pred EEECCeEEEEEeCCCccc--------hHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEE
Q psy15197 246 FETKTKYITLLDAPGHKD--------FIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVV 317 (902)
Q Consensus 246 ~~~~~~~i~lIDTPG~~d--------f~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVv 317 (902)
+..++.++.|+||||+++ +.+.+..++..+|+++||||++++ ....++.++..++..+.| +|++
T Consensus 49 ~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~-------~~~~d~~il~~lk~~~~p-vil~ 120 (298)
T COG1159 49 VTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEG-------WGPGDEFILEQLKKTKTP-VILV 120 (298)
T ss_pred EEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEecccc-------CCccHHHHHHHHhhcCCC-eEEE
Confidence 455789999999999876 677788888999999999999987 334667777777775555 6699
Q ss_pred EecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCcccHHHHHHhcCCCCC--
Q psy15197 318 INKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNFKTPSR-- 395 (902)
Q Consensus 318 iNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L~~l~~p~~-- 395 (902)
+||+|...... .+..+.+.+. ....+. .++++||++|.|+.. |++.|...+++..
T Consensus 121 iNKID~~~~~~-~l~~~~~~~~---~~~~f~----~ivpiSA~~g~n~~~---------------L~~~i~~~Lpeg~~~ 177 (298)
T COG1159 121 VNKIDKVKPKT-VLLKLIAFLK---KLLPFK----EIVPISALKGDNVDT---------------LLEIIKEYLPEGPWY 177 (298)
T ss_pred EEccccCCcHH-HHHHHHHHHH---hhCCcc----eEEEeeccccCCHHH---------------HHHHHHHhCCCCCCc
Confidence 99999886322 1233333332 233332 789999999999998 8888877665532
Q ss_pred -----CCCCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCcEEEEEEEEEceEeeeeeccCCeEEEeeecc
Q psy15197 396 -----PLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYVDEMSVSAAYAGDNVSVTLLNY 470 (902)
Q Consensus 396 -----~~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~~~~~v~~a~aGdiv~I~l~~~ 470 (902)
-++.|.+|.+.++.+ ++++..-..+.++...|+++....+ ....+.|...++
T Consensus 178 yp~d~itD~~~rf~~aEiiR--------------------Ek~~~~l~eElPhsv~VeIe~~~~~---~~~~~~I~a~I~ 234 (298)
T COG1159 178 YPEDQITDRPERFLAAEIIR--------------------EKLLLLLREELPHSVAVEIEEFEER---EKGLLKIHATIY 234 (298)
T ss_pred CChhhccCChHHHHHHHHHH--------------------HHHHHhcccccCceEEEEEEEEEec---CCCeEEEEEEEE
Confidence 347889999999888 6666666778889888888776555 567888999999
Q ss_pred ccccceeeccccCCCC
Q psy15197 471 DQQNVSVGFLLSELSH 486 (902)
Q Consensus 471 ~~~~i~kG~vL~~~~~ 486 (902)
++++.+||+++++.+.
T Consensus 235 Ver~sQK~IiIGk~G~ 250 (298)
T COG1159 235 VERESQKGIIIGKNGA 250 (298)
T ss_pred EecCCccceEECCCcH
Confidence 9999999999998764
No 81
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.90 E-value=2e-23 Score=219.90 Aligned_cols=126 Identities=29% Similarity=0.318 Sum_probs=98.5
Q ss_pred ccCCeEEeeeEEEEEEC----------CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHH
Q psy15197 233 LNRGITMDVGQSQFETK----------TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREH 302 (902)
Q Consensus 233 ~~rGiTid~~~~~~~~~----------~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~ 302 (902)
++||+|++.+..++.+. ++.++|||||||.+|...+..+++.+|++|+|+|+++|. ..+++++
T Consensus 45 ~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~-------~~~t~~~ 117 (222)
T cd01885 45 QERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGV-------CVQTETV 117 (222)
T ss_pred HHhccccccceEEEEEecCcccccCCCceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCC-------CHHHHHH
Confidence 67777777776666554 789999999999999999999999999999999999984 3688888
Q ss_pred HHHHHHhCCCeEEEEEecCCCC------C--chHHHHHHHHHHHHHhhhhcCC-------------CCCCceEecCCCcc
Q psy15197 303 ALLVRSLGVNQLGVVINKLDTV------S--WSQDRFQEIVTKLGAFLKQAGF-------------RDSDIEYVPCSGLT 361 (902)
Q Consensus 303 l~~l~~~~i~~iIVviNKiDl~------~--~~~~~~~~i~~~l~~~l~~~~~-------------~~~~~~ii~iSA~~ 361 (902)
+..+...++| +|+|+||+|+. + +...++.++.++++.+++.+.- .+..-.+++.||+.
T Consensus 118 l~~~~~~~~p-~ilviNKiD~~~~e~~~~~~~~~~~~~~ii~~~n~~i~~~~~~~~~~~~~~~~~~~p~~gnv~f~S~~~ 196 (222)
T cd01885 118 LRQALKERVK-PVLVINKIDRLILELKLSPEEAYQRLARIIEQVNAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALH 196 (222)
T ss_pred HHHHHHcCCC-EEEEEECCCcchhhhcCCHHHHHHHHHHHHHHHhHHHHhcccccccccCcCCcEEeeCCCcEEEEeccc
Confidence 8888888876 67999999975 1 2245677788888887766521 11111288999999
Q ss_pred CCCCC
Q psy15197 362 GENLT 366 (902)
Q Consensus 362 G~gI~ 366 (902)
|+...
T Consensus 197 gw~f~ 201 (222)
T cd01885 197 GWGFT 201 (222)
T ss_pred CEEec
Confidence 98874
No 82
>KOG0464|consensus
Probab=99.89 E-value=2.6e-24 Score=231.52 Aligned_cols=241 Identities=18% Similarity=0.224 Sum_probs=181.0
Q ss_pred hhhhhhhhhcccccccccccccCCeEEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccc
Q psy15197 213 KIEFACLVMRIVPLEGIASALNRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETG 292 (902)
Q Consensus 213 ~~~~~~~~~d~~~~~~~~~e~~rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~ 292 (902)
-+|.+.+++||+.+| |+||||+......|.|+++++++||||||.||.-++.++++.-|+++.|+|++.|
T Consensus 69 ~vddgdtvtdfla~e-----rergitiqsaav~fdwkg~rinlidtpghvdf~leverclrvldgavav~dasag----- 138 (753)
T KOG0464|consen 69 DVDDGDTVTDFLAIE-----RERGITIQSAAVNFDWKGHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAG----- 138 (753)
T ss_pred ccCCCchHHHHHHHH-----HhcCceeeeeeeecccccceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCC-----
Confidence 345566788999888 9999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchhhHHHHHHHHHhCCCeEEEEEecCCCCC-----------------------------------------------
Q psy15197 293 FESGGQTREHALLVRSLGVNQLGVVINKLDTVS----------------------------------------------- 325 (902)
Q Consensus 293 ~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~----------------------------------------------- 325 (902)
++.|+...++...+.++|.. .++||||+..
T Consensus 139 --ve~qtltvwrqadk~~ip~~-~finkmdk~~anfe~avdsi~ekl~ak~l~l~lpi~eak~fnkg~ldil~ke~l~~n 215 (753)
T KOG0464|consen 139 --VEAQTLTVWRQADKFKIPAH-CFINKMDKLAANFENAVDSIEEKLGAKALKLQLPIGEAKGFNKGFLDILHKEKLLGN 215 (753)
T ss_pred --cccceeeeehhccccCCchh-hhhhhhhhhhhhhhhHHHHHHHHhCCceEEEEecccccccccchHHHHHHHhhccCC
Confidence 55799999999999999865 8999999110
Q ss_pred -----------------chHHHHHHHHH----------------------------------HHHHhhhhcCCCCCCceE
Q psy15197 326 -----------------WSQDRFQEIVT----------------------------------KLGAFLKQAGFRDSDIEY 354 (902)
Q Consensus 326 -----------------~~~~~~~~i~~----------------------------------~l~~~l~~~~~~~~~~~i 354 (902)
.+++..+++.+ ++...+.++-+....+|+
T Consensus 216 cnsndgkd~e~~plle~ndpel~e~~ae~knal~~qlad~~~dfad~~ldef~~n~d~i~a~elksai~~lt~aq~a~~i 295 (753)
T KOG0464|consen 216 CNSNDGKDFENKPLLEKNDPELAEELAEAKNALCEQLADLDADFADKFLDEFDENFDKIDAEELKSAIHELTCAQKAAPI 295 (753)
T ss_pred CCCCccccccCCcccccCCHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhccccccCHHHHHHHHHHHhhhhhhcce
Confidence 01111111110 111111111122345689
Q ss_pred ecCCCccCCCCCCCCCCcccccccCcccHHHHHHhcCC-CCC-------CCCCCceEEEeeEEeeCCCeEEEEEEEEeeE
Q psy15197 355 VPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNFKT-PSR-------PLTKPLRMSVSDIYKSTGSGYCIAGRVETGV 426 (902)
Q Consensus 355 i~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L~~l~~-p~~-------~~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~ 426 (902)
.+.||.++.||.. |++++.-++| |.. .....+....+++..++.+|..++-||++|+
T Consensus 296 ~cgsaiknkgiqp---------------lldavtmylpspeernyeflqwykddlcalafkvlhdkqrg~l~fmriysgs 360 (753)
T KOG0464|consen 296 LCGSAIKNKGIQP---------------LLDAVTMYLPSPEERNYEFLQWYKDDLCALAFKVLHDKQRGPLSFMRIYSGS 360 (753)
T ss_pred ehhhhhcccCccc---------------hhhhhhhccCChhhcchHHHhhhhhhHHHHhhhhhcccccCceeEEEEeccc
Confidence 9999999999998 7777765443 321 1234566777888899999999999999999
Q ss_pred eeCCCEEEEccCCcEEEEEEEEE----ceEeeeeeccCCeEEEeeeccccccceeeccccCCC
Q psy15197 427 ILAGEKVMVQPQNEVTTVKAVYV----DEMSVSAAYAGDNVSVTLLNYDQQNVSVGFLLSELS 485 (902)
Q Consensus 427 Lk~Gd~v~l~p~~~~~~V~sI~~----~~~~v~~a~aGdiv~I~l~~~~~~~i~kG~vL~~~~ 485 (902)
|+.+-.+..........+..+.. .+..+.++.||.+....+. +..-.|+++...+
T Consensus 361 i~~~~ai~nin~~~se~~~kl~~pfade~~~i~qlsagnialt~gl----k~tatgdtivask 419 (753)
T KOG0464|consen 361 IHNNLAIFNINGMCSEGILKLFLPFADEHREIEQLSAGNIALTAGL----KHTATGDTIVASK 419 (753)
T ss_pred ccCceeeeecccccccchHhhhccchhhhhhhhhcccccEEEEecc----eeeccCCeEEecc
Confidence 99999998876555555554443 4567788999998777665 5667888886554
No 83
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.88 E-value=1.8e-22 Score=225.12 Aligned_cols=299 Identities=21% Similarity=0.167 Sum_probs=205.1
Q ss_pred eEEEEEecCCCChhHHHhHHHHhccccchhhhccchhhhhh---cccccceeeeeccccCcccccCCcccc---CCCCCC
Q psy15197 27 LHLVVIGHVDAGKSTLMGHLLYLMGRVSAREIHKHETESKK---LGKQSFMYAWILDETGEESSCEIPVDT---TSAGNP 100 (902)
Q Consensus 27 ~~v~v~G~~~~GKstL~~~ll~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~~ 100 (902)
..|||||+||+|||||+|+|+.+.-+|-....|.+|+..-. .....| .+-|+.+-+......+.. ..+...
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f---~lIDTgGl~~~~~~~l~~~i~~Qa~~A 80 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREF---ILIDTGGLDDGDEDELQELIREQALIA 80 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceE---EEEECCCCCcCCchHHHHHHHHHHHHH
Confidence 46999999999999999999999999999999999887433 221123 334555544211111111 122334
Q ss_pred CCccccccccCCCCC-CCCcchhhhhccccccCCCCccchhcccCCCCccccccchhhhccCCCCCCCCCcccccccccc
Q psy15197 101 VDSETIIKTIGPHGP-VPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFEDRETIIKTIGPHGPVPLEDTYYLDKLF 179 (902)
Q Consensus 101 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (902)
++.+|.|+.+.+... ++++|.+..+.|+....-.+- ++|+.++... +. ..-.++.++|...+
T Consensus 81 i~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviL--vvNK~D~~~~------e~---------~~~efyslG~g~~~ 143 (444)
T COG1160 81 IEEADVILFVVDGREGITPADEEIAKILRRSKKPVIL--VVNKIDNLKA------EE---------LAYEFYSLGFGEPV 143 (444)
T ss_pred HHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEE--EEEcccCchh------hh---------hHHHHHhcCCCCce
Confidence 566788888888777 788899999999966666665 5677655410 00 00011122333333
Q ss_pred cccCCCCcccccccCCCCc----------------------cccceecccCCccchhhhhhhhhcccccccccccccCCe
Q psy15197 180 HFSGERNPERVVHAKGGGA----------------------FGYFEVRKLPAGVVKIEFACLVMRIVPLEGIASALNRGI 237 (902)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~e~~rGi 237 (902)
..|+. |+.|.+. ..-+-+.+-+|-.++. ..+. ...+|..-.+.+.|+
T Consensus 144 ~ISA~-------Hg~Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSs-LiN~---ilgeeR~Iv~~~aGT 212 (444)
T COG1160 144 PISAE-------HGRGIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSS-LINA---ILGEERVIVSDIAGT 212 (444)
T ss_pred Eeehh-------hccCHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchH-HHHH---hccCceEEecCCCCc
Confidence 33321 1111111 1112233333332222 2222 234444455678999
Q ss_pred EEeeeEEEEEECCeEEEEEeCCCccc-----------hHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHH
Q psy15197 238 TMDVGQSQFETKTKYITLLDAPGHKD-----------FIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLV 306 (902)
Q Consensus 238 Tid~~~~~~~~~~~~i~lIDTPG~~d-----------f~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l 306 (902)
|+|.+...++++++.+.||||+|.++ -...+..++..||+++||+||++|.. .|+..+..++
T Consensus 213 TRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~-------~qD~~ia~~i 285 (444)
T COG1160 213 TRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGIS-------EQDLRIAGLI 285 (444)
T ss_pred cccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCch-------HHHHHHHHHH
Confidence 99999999999999999999999986 45568889999999999999999955 5999999999
Q ss_pred HHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCC
Q psy15197 307 RSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 368 (902)
Q Consensus 307 ~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~ 368 (902)
...|.. +|||+||||+++.+...+++..+++...+..+++. |++++||++|.|+.++
T Consensus 286 ~~~g~~-~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a----~i~~iSA~~~~~i~~l 342 (444)
T COG1160 286 EEAGRG-IVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFA----PIVFISALTGQGLDKL 342 (444)
T ss_pred HHcCCC-eEEEEEccccCCchhhHHHHHHHHHHHHhccccCC----eEEEEEecCCCChHHH
Confidence 999865 67999999998765567788888888888888884 9999999999999984
No 84
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.87 E-value=1.5e-21 Score=211.89 Aligned_cols=123 Identities=24% Similarity=0.235 Sum_probs=97.7
Q ss_pred hhcccccccccccccCCeEEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhh
Q psy15197 220 VMRIVPLEGIASALNRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQT 299 (902)
Q Consensus 220 ~~d~~~~~~~~~e~~rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt 299 (902)
++|+.+.| ++||+|++.....++|++++++|||||||.+|...+..+++.+|++|+|||+..+ ...++
T Consensus 38 ~~D~~~~E-----~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g-------~~~~t 105 (270)
T cd01886 38 TMDFMEQE-----RERGITIQSAATTCFWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAG-------VEPQT 105 (270)
T ss_pred ccCCCccc-----cCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCC-------CCHHH
Confidence 44555544 9999999999999999999999999999999999999999999999999999998 44688
Q ss_pred HHHHHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccC
Q psy15197 300 REHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTG 362 (902)
Q Consensus 300 ~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G 362 (902)
..++..+...++| +|+++||+|+.+.+. ..+.+++...+....+ ..++|+|+..+
T Consensus 106 ~~~~~~~~~~~~p-~ivviNK~D~~~a~~---~~~~~~l~~~l~~~~~----~~~~Pisa~~~ 160 (270)
T cd01886 106 ETVWRQADRYNVP-RIAFVNKMDRTGADF---FRVVEQIREKLGANPV----PLQLPIGEEDD 160 (270)
T ss_pred HHHHHHHHHcCCC-EEEEEECCCCCCCCH---HHHHHHHHHHhCCCce----EEEeccccCCC
Confidence 8899888888877 458999999975433 3344455544433222 24688998744
No 85
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.87 E-value=2.4e-21 Score=206.57 Aligned_cols=86 Identities=33% Similarity=0.480 Sum_probs=78.0
Q ss_pred cccCCeEEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCC
Q psy15197 232 ALNRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGV 311 (902)
Q Consensus 232 e~~rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i 311 (902)
|++||+|+......+++++++++|||||||.+|...+..+++.+|++|+|+|++++ ...++..++..+...++
T Consensus 45 e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g-------~~~~~~~~~~~~~~~~~ 117 (237)
T cd04168 45 ERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEG-------VQAQTRILWRLLRKLNI 117 (237)
T ss_pred HhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCC-------CCHHHHHHHHHHHHcCC
Confidence 38999999999999999999999999999999999999999999999999999988 33578888888888887
Q ss_pred CeEEEEEecCCCCC
Q psy15197 312 NQLGVVINKLDTVS 325 (902)
Q Consensus 312 ~~iIVviNKiDl~~ 325 (902)
| +|+++||+|+..
T Consensus 118 P-~iivvNK~D~~~ 130 (237)
T cd04168 118 P-TIIFVNKIDRAG 130 (237)
T ss_pred C-EEEEEECccccC
Confidence 7 568999999864
No 86
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.85 E-value=1.7e-20 Score=198.24 Aligned_cols=124 Identities=31% Similarity=0.447 Sum_probs=102.0
Q ss_pred EEEECCeEEEEEeCCCccchHHHHHHHHH--HcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCC
Q psy15197 245 QFETKTKYITLLDAPGHKDFIPNMITGAT--QADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLD 322 (902)
Q Consensus 245 ~~~~~~~~i~lIDTPG~~df~~~~~~~l~--~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiD 322 (902)
.++..++.++|||||||++|.+.+..++. .+|++++|||+..+. ..++.+++.++...++| +|+|+||+|
T Consensus 78 ~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~-------~~~d~~~l~~l~~~~ip-~ivvvNK~D 149 (224)
T cd04165 78 ICEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGI-------IGMTKEHLGLALALNIP-VFVVVTKID 149 (224)
T ss_pred eeeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCC-------cHHHHHHHHHHHHcCCC-EEEEEECcc
Confidence 35667899999999999999999999986 799999999999884 36899999999999987 669999999
Q ss_pred CCCchHHHHHHHHHHHHHhhhhcCCC---------------------CCCceEecCCCccCCCCCCCCCCcccccccCcc
Q psy15197 323 TVSWSQDRFQEIVTKLGAFLKQAGFR---------------------DSDIEYVPCSGLTGENLTTPSQVPALTSWYSGP 381 (902)
Q Consensus 323 l~~~~~~~~~~i~~~l~~~l~~~~~~---------------------~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~ 381 (902)
+.+ ...+.+..+++...++..++. ...+|++++||.+|+|+++
T Consensus 150 ~~~--~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~-------------- 213 (224)
T cd04165 150 LAP--ANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDL-------------- 213 (224)
T ss_pred ccC--HHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHH--------------
Confidence 875 445667777777777643322 1235899999999999998
Q ss_pred cHHHHHHhcCCC
Q psy15197 382 CLLDVIDNFKTP 393 (902)
Q Consensus 382 ~Lle~L~~l~~p 393 (902)
|.+.|..+|++
T Consensus 214 -L~~~L~~lp~~ 224 (224)
T cd04165 214 -LHAFLNLLPLR 224 (224)
T ss_pred -HHHHHHhcCCC
Confidence 89999888763
No 87
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.85 E-value=1.4e-20 Score=203.97 Aligned_cols=86 Identities=37% Similarity=0.522 Sum_probs=76.5
Q ss_pred cccCCeEEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCC
Q psy15197 232 ALNRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGV 311 (902)
Q Consensus 232 e~~rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i 311 (902)
|++||+|+......++|+++.++||||||+.+|...+..+++.+|++|+|+|++.+. ..++..++..+...++
T Consensus 52 e~~rg~si~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~-------~~~~~~i~~~~~~~~~ 124 (267)
T cd04169 52 EKQRGISVTSSVMQFEYRDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGV-------EPQTRKLFEVCRLRGI 124 (267)
T ss_pred HHhCCCCeEEEEEEEeeCCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCc-------cHHHHHHHHHHHhcCC
Confidence 399999999999999999999999999999999999999999999999999999873 3567777777777787
Q ss_pred CeEEEEEecCCCCC
Q psy15197 312 NQLGVVINKLDTVS 325 (902)
Q Consensus 312 ~~iIVviNKiDl~~ 325 (902)
| +++++||+|+..
T Consensus 125 P-~iivvNK~D~~~ 137 (267)
T cd04169 125 P-IITFINKLDREG 137 (267)
T ss_pred C-EEEEEECCccCC
Confidence 7 669999999754
No 88
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.84 E-value=1e-19 Score=224.55 Aligned_cols=174 Identities=27% Similarity=0.422 Sum_probs=134.8
Q ss_pred EEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCC-CchH--
Q psy15197 252 YITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTV-SWSQ-- 328 (902)
Q Consensus 252 ~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~-~~~~-- 328 (902)
.++|||||||.+|...+..++..+|++|+|+|+++| ...++.+++..+...++| +|+|+||+|+. +|..
T Consensus 527 ~i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~G-------i~~qT~e~I~~lk~~~iP-iIVViNKiDL~~~~~~~~ 598 (1049)
T PRK14845 527 GLLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEG-------FKPQTIEAINILRQYKTP-FVVAANKIDLIPGWNISE 598 (1049)
T ss_pred cEEEEECCCcHHHHHHHHhhcccCCEEEEEEECccc-------CCHhHHHHHHHHHHcCCC-EEEEEECCCCcccccccc
Confidence 389999999999998888888999999999999988 346899999888888876 77999999996 3431
Q ss_pred -------------HHHHHHHHH---HHHhhhhcCCC----------CCCceEecCCCccCCCCCCCCCCcccccccCccc
Q psy15197 329 -------------DRFQEIVTK---LGAFLKQAGFR----------DSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPC 382 (902)
Q Consensus 329 -------------~~~~~i~~~---l~~~l~~~~~~----------~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~ 382 (902)
....++... +...|...|+. ...++++++||++|+||++
T Consensus 599 ~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~--------------- 663 (1049)
T PRK14845 599 DEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPE--------------- 663 (1049)
T ss_pred chhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHH---------------
Confidence 111222111 11223444443 2467999999999999998
Q ss_pred HHHHHHhcCC------CCCCCCCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCc--EEEEEEEE
Q psy15197 383 LLDVIDNFKT------PSRPLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNE--VTTVKAVY 448 (902)
Q Consensus 383 Lle~L~~l~~------p~~~~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~--~~~V~sI~ 448 (902)
|++.|..+.. .....+.|+++.|.+++.++|.|+|++|.|.+|+|++||.|.+++.+. ..+|+++.
T Consensus 664 Ll~~l~~l~~~~l~~~L~~~~~~~~~g~VlEv~~~kG~G~vvt~iv~~G~Lk~GD~iv~g~~~~~i~~kVRaLl 737 (1049)
T PRK14845 664 LLMMVAGLAQKYLEERLKLNVEGYAKGTILEVKEEKGLGTTIDAIIYDGTLRRGDTIVVGGPDDVIVTKVRALL 737 (1049)
T ss_pred HHHHHHHhhHHhhhhhhccCCCCceEEEEEEEEEecCceeEEEEEEEcCEEecCCEEEEccCCCcceEEEEEec
Confidence 6666643322 122346789999999999999999999999999999999999999765 67888876
No 89
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.84 E-value=2.7e-20 Score=194.07 Aligned_cols=108 Identities=26% Similarity=0.408 Sum_probs=83.4
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHH
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQD 329 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~ 329 (902)
++.++|||||||.+|...+..++..+|++|+|+|++++. ...++.+++..+...+++++|||+||+|+.+ ..
T Consensus 82 ~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~------~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~--~~ 153 (203)
T cd01888 82 VRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPC------PQPQTSEHLAALEIMGLKHIIIVQNKIDLVK--EE 153 (203)
T ss_pred ccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCC------CCcchHHHHHHHHHcCCCcEEEEEEchhccC--HH
Confidence 478999999999999999999999999999999999742 1246677777777777777889999999975 23
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 330 RFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 330 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
......+++...++.... ..++++++||++|.|+++
T Consensus 154 ~~~~~~~~i~~~~~~~~~--~~~~i~~vSA~~g~gi~~ 189 (203)
T cd01888 154 QALENYEQIKKFVKGTIA--ENAPIIPISAQLKYNIDV 189 (203)
T ss_pred HHHHHHHHHHHHHhcccc--CCCcEEEEeCCCCCCHHH
Confidence 334444555555543221 235899999999999998
No 90
>KOG0467|consensus
Probab=99.84 E-value=5.5e-20 Score=211.86 Aligned_cols=126 Identities=27% Similarity=0.408 Sum_probs=97.4
Q ss_pred ccCCeEEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCC
Q psy15197 233 LNRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVN 312 (902)
Q Consensus 233 ~~rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~ 312 (902)
+.||||+..+..+...+++.++|||+|||.||..++.++.+.+|+++++||+.+|+. .||...++.+-..+.+
T Consensus 54 q~rgitmkss~is~~~~~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~-------~qt~~vlrq~~~~~~~ 126 (887)
T KOG0467|consen 54 QTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVC-------SQTYAVLRQAWIEGLK 126 (887)
T ss_pred hhhceeeeccccccccCceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccc-------hhHHHHHHHHHHccCc
Confidence 889999999999999999999999999999999999999999999999999999944 7999888877777877
Q ss_pred eEEEEEecCCCC----Cc-hHH---HHHHHHHHHHHhhh-------------------hcCCCCCCceEecCCCccCCCC
Q psy15197 313 QLGVVINKLDTV----SW-SQD---RFQEIVTKLGAFLK-------------------QAGFRDSDIEYVPCSGLTGENL 365 (902)
Q Consensus 313 ~iIVviNKiDl~----~~-~~~---~~~~i~~~l~~~l~-------------------~~~~~~~~~~ii~iSA~~G~gI 365 (902)
++ +|+||||.. .. ..+ .+..+++.++..+. ..-+++..-.+++.||..|.|+
T Consensus 127 ~~-lvinkidrl~~el~lsp~ea~~~l~r~i~~vn~~i~~~~~~~v~l~~~~~~i~d~~~~F~p~kgNVif~~A~~~~~f 205 (887)
T KOG0467|consen 127 PI-LVINKIDRLITELKLSPQEAYEHLLRVIEQVNGVIGQFLGGIVELDDNWENIEDEEITFGPEDGNVIFASALDGWGF 205 (887)
T ss_pred eE-EEEehhhhHHHHHhcChHHHHHHHHHHHHHhhhHHHHhhcchhhccchhhhhhhcceeecCCCCcEEEEEecccccc
Confidence 55 999999932 11 122 22333344443333 2223444456889999999876
Q ss_pred C
Q psy15197 366 T 366 (902)
Q Consensus 366 ~ 366 (902)
.
T Consensus 206 ~ 206 (887)
T KOG0467|consen 206 G 206 (887)
T ss_pred c
Confidence 5
No 91
>KOG0469|consensus
Probab=99.84 E-value=5.3e-21 Score=210.26 Aligned_cols=222 Identities=28% Similarity=0.342 Sum_probs=144.5
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCC----C
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTV----S 325 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~----~ 325 (902)
++.|++||.|||.||..++..+++..|++++|||+.+|+. -||+..+..+....++|+ +++||+|.+ .
T Consensus 97 ~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvC-------VQTETVLrQA~~ERIkPv-lv~NK~DRAlLELq 168 (842)
T KOG0469|consen 97 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVC-------VQTETVLRQAIAERIKPV-LVMNKMDRALLELQ 168 (842)
T ss_pred ceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceE-------echHHHHHHHHHhhccce-EEeehhhHHHHhhc
Confidence 7899999999999999999999999999999999999854 589999988888888887 899999963 1
Q ss_pred chHHHH----HHHHHHHHHhhhhcCCC--------CCCceEecCCCccCCCCCCC-------------------------
Q psy15197 326 WSQDRF----QEIVTKLGAFLKQAGFR--------DSDIEYVPCSGLTGENLTTP------------------------- 368 (902)
Q Consensus 326 ~~~~~~----~~i~~~l~~~l~~~~~~--------~~~~~ii~iSA~~G~gI~~~------------------------- 368 (902)
.+++++ ..+.+.++-.+..++.. +..-.+-++|.++|++..-.
T Consensus 169 ~~~EeLyqtf~R~VE~vNviisTy~d~~~g~~~v~P~kg~v~F~SGLhGWaFTlrQFa~~Y~~KF~~~~~kmm~~LWg~~ 248 (842)
T KOG0469|consen 169 LSQEELYQTFQRIVENVNVIISTYGDGPMGDVQVDPEKGTVGFGSGLHGWAFTLRQFAEMYAKKFGIDVRKMMNRLWGDN 248 (842)
T ss_pred CCHHHHHHHHHHHHhcccEEEEecccCCcCceEecCCCCceeeccccchhhhhHHHHHHHHHHHhCCcHHHHHHHhhccc
Confidence 222222 22222222222222221 11123456788877664311
Q ss_pred CCCccccccc--------------------------------------------------------Cc------------
Q psy15197 369 SQVPALTSWY--------------------------------------------------------SG------------ 380 (902)
Q Consensus 369 ~~~~~~~~w~--------------------------------------------------------~g------------ 380 (902)
...+.-..|. .|
T Consensus 249 ~f~~ktkk~~~s~t~~~gn~~~r~F~~~iLdPIykvfdaimN~kkeei~~llekl~v~lk~~~kd~eGK~LlK~vMr~wL 328 (842)
T KOG0469|consen 249 FFNPKTKKWSKSATDAEGNPLRRAFCMFILDPIYKVFDAIMNFKKEEIATLLEKLEVTLKGDEKDLEGKALLKVVMRKWL 328 (842)
T ss_pred ccCccCCcccccccccccCccccceeEEeechHHHHHHHHhhccHHHHHHHHHHhcceeccccccccchHHHHHHHHHhc
Confidence 0001112231 01
Q ss_pred ---ccHHHHH-HhcCCC-------------------------CCCCCCCceEEEeeEEeeCCCeE-EEEEEEEeeEeeCC
Q psy15197 381 ---PCLLDVI-DNFKTP-------------------------SRPLTKPLRMSVSDIYKSTGSGY-CIAGRVETGVILAG 430 (902)
Q Consensus 381 ---~~Lle~L-~~l~~p-------------------------~~~~~~pl~~~I~~i~~v~g~G~-V~~GrV~sG~Lk~G 430 (902)
..|++.| -++|.| .+..+.|+.|.|.+..-....|+ .++|||++|.+..|
T Consensus 329 PAadallemIalhLPSPvtaQkyR~e~LYEGP~DDe~a~aik~CD~~aplmmYvSKMvPtsDkgRFyAFGRVFsG~v~~G 408 (842)
T KOG0469|consen 329 PAADALLEMIALHLPSPVTAQKYRAEYLYEGPADDEAAVAIKNCDPKAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVFTG 408 (842)
T ss_pred chHHHHHHHHHhhCCCchHHHHHHHHHhhcCCCchHHhhHhhccCCCCCeEEeeeeccccCCCceEEEEeeeecceeccC
Confidence 1233322 223333 13447899999999988778876 79999999999999
Q ss_pred CEEEEccCCc------EEEEEEEEE-------ceEeeeeeccCCeEEEeeeccccccceeeccc
Q psy15197 431 EKVMVQPQNE------VTTVKAVYV-------DEMSVSAAYAGDNVSVTLLNYDQQNVSVGFLL 481 (902)
Q Consensus 431 d~v~l~p~~~------~~~V~sI~~-------~~~~v~~a~aGdiv~I~l~~~~~~~i~kG~vL 481 (902)
+++.+...+- ...+++|+. .-+++..+.+|.+++|.+. +.--++.|.+-
T Consensus 409 ~KvRiqgPnY~PGkkedl~~K~iqRtvlMMGr~vepied~PaGNIiGlvGv--DqfLvKtGTiT 470 (842)
T KOG0469|consen 409 LKVRIQGPNYVPGKKEDLYIKAIQRTVLMMGRFVEPIEDCPAGNIIGLVGV--DQFLVKTGTIT 470 (842)
T ss_pred cEEEEeCCCCCCCcHHHHHHHHHHHHHHHhcccccccccCCCCcEEEEeeh--hHhhhccCcee
Confidence 9999965431 223344431 4468889999999999774 33334555433
No 92
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.84 E-value=8e-20 Score=188.78 Aligned_cols=125 Identities=29% Similarity=0.315 Sum_probs=95.9
Q ss_pred ccCCeEEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCC
Q psy15197 233 LNRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVN 312 (902)
Q Consensus 233 ~~rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~ 312 (902)
..+|+|++.....+.+++..++||||||+.+|...+..+++.+|++|+|+|++++.. .++..++..+...++|
T Consensus 47 ~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~~-------~~~~~~~~~~~~~~~p 119 (194)
T cd01891 47 RERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPM-------PQTRFVLKKALELGLK 119 (194)
T ss_pred HhcccccccceeEEEECCEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCcc-------HHHHHHHHHHHHcCCC
Confidence 678899998888899999999999999999999999999999999999999998733 3556666666666776
Q ss_pred eEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCC--CCceEecCCCccCCCCCCC
Q psy15197 313 QLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRD--SDIEYVPCSGLTGENLTTP 368 (902)
Q Consensus 313 ~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~--~~~~ii~iSA~~G~gI~~~ 368 (902)
+++|+||+|+.... .....+++...+..++... ..++++++||++|.|+.+.
T Consensus 120 -~iiv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 120 -PIVVINKIDRPDAR---PEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNL 173 (194)
T ss_pred -EEEEEECCCCCCCC---HHHHHHHHHHHHHHhCCccccCccCEEEeehhcccccccc
Confidence 56899999997422 2233344444443333221 2458999999999999873
No 93
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.84 E-value=5.5e-20 Score=189.70 Aligned_cols=136 Identities=35% Similarity=0.498 Sum_probs=96.8
Q ss_pred ccCCeEEeeeEEEEEEC--------------CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchh
Q psy15197 233 LNRGITMDVGQSQFETK--------------TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQ 298 (902)
Q Consensus 233 ~~rGiTid~~~~~~~~~--------------~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~q 298 (902)
+++|+|++.....+.+. ++.++||||||+.++......++..+|++++|+|++++.. .+
T Consensus 36 ~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~-------~~ 108 (192)
T cd01889 36 QERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQ-------TQ 108 (192)
T ss_pred HHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcc-------HH
Confidence 55677777766666554 7799999999999999999999999999999999998733 35
Q ss_pred hHHHHHHHHHhCCCeEEEEEecCCCCCchH--HHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCCCCccccc
Q psy15197 299 TREHALLVRSLGVNQLGVVINKLDTVSWSQ--DRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTS 376 (902)
Q Consensus 299 t~~~l~~l~~~~i~~iIVviNKiDl~~~~~--~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~ 376 (902)
+.+.+..+...+.+ +++|+||+|+..... ...+++.+++...+...+. ..++++++||++|.|+.+
T Consensus 109 ~~~~~~~~~~~~~~-~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~vi~iSa~~g~gi~~--------- 176 (192)
T cd01889 109 TAECLVIGEILCKK-LIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRF--KNSPIIPVSAKPGGGEAE--------- 176 (192)
T ss_pred HHHHHHHHHHcCCC-EEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCc--CCCCEEEEeccCCCCHHH---------
Confidence 55555555556664 779999999974221 1233333333333333222 246899999999999998
Q ss_pred ccCcccHHHHHHh-cCCC
Q psy15197 377 WYSGPCLLDVIDN-FKTP 393 (902)
Q Consensus 377 w~~g~~Lle~L~~-l~~p 393 (902)
|++.|.. +++|
T Consensus 177 ------L~~~l~~~~~~~ 188 (192)
T cd01889 177 ------LGKDLNNLIVLP 188 (192)
T ss_pred ------HHHHHHhccccc
Confidence 8888865 4444
No 94
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.83 E-value=1e-19 Score=190.96 Aligned_cols=126 Identities=20% Similarity=0.265 Sum_probs=92.4
Q ss_pred ccCCeEEeeeEEEEEEC-----CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHH
Q psy15197 233 LNRGITMDVGQSQFETK-----TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVR 307 (902)
Q Consensus 233 ~~rGiTid~~~~~~~~~-----~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~ 307 (902)
+++|+|++.....+.+. .+.++|||||||.+|...+..++..+|++|+|+|++.+.. .++.+++..+.
T Consensus 48 ~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~-------~~~~~~~~~~~ 120 (213)
T cd04167 48 QERGISIKSSPISLVLPDSKGKSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVT-------SNTERLIRHAI 120 (213)
T ss_pred HHcCccccccceeEEEEcCCCCEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCC-------HHHHHHHHHHH
Confidence 66777777776666553 4789999999999999999999999999999999998732 45566666666
Q ss_pred HhCCCeEEEEEecCCCCC--------chHHHHHHHHHHHHHhhhhcCCCC------CCceEecCCCccCCCCC
Q psy15197 308 SLGVNQLGVVINKLDTVS--------WSQDRFQEIVTKLGAFLKQAGFRD------SDIEYVPCSGLTGENLT 366 (902)
Q Consensus 308 ~~~i~~iIVviNKiDl~~--------~~~~~~~~i~~~l~~~l~~~~~~~------~~~~ii~iSA~~G~gI~ 366 (902)
..+.+ +++|+||+|++. ....++.+++++++.+++.+++.. .+..+++.||+.++++.
T Consensus 121 ~~~~p-~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~ 192 (213)
T cd04167 121 LEGLP-IVLVINKIDRLILELKLPPNDAYFKLRHIIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFT 192 (213)
T ss_pred HcCCC-EEEEEECcccCcccccCCHHHHHHHHHHHHHHHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEe
Confidence 66755 779999999851 223567777788888887776532 12235566777666654
No 95
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.83 E-value=6.8e-20 Score=199.38 Aligned_cols=195 Identities=19% Similarity=0.247 Sum_probs=130.7
Q ss_pred CeEEeeeEEEEEECCeEEEEEeCCCccc--------hHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHH
Q psy15197 236 GITMDVGQSQFETKTKYITLLDAPGHKD--------FIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVR 307 (902)
Q Consensus 236 GiTid~~~~~~~~~~~~i~lIDTPG~~d--------f~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~ 307 (902)
++|++........++.++.|+||||+.+ +.+.+..++..+|++++|+|++.... .....+..+.
T Consensus 33 ~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~--------~~~~i~~~l~ 104 (270)
T TIGR00436 33 QTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNG--------DGEFVLTKLQ 104 (270)
T ss_pred CcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCc--------hHHHHHHHHH
Confidence 4444444344445677899999999864 23446677889999999999987632 1244455555
Q ss_pred HhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCcccHHHHH
Q psy15197 308 SLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVI 387 (902)
Q Consensus 308 ~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L 387 (902)
..+.| +|+|+||+|+.+ ..... +.+..+....++ .+++++||++|.|+++ |.+.|
T Consensus 105 ~~~~p-~ilV~NK~Dl~~--~~~~~---~~~~~~~~~~~~----~~v~~iSA~~g~gi~~---------------L~~~l 159 (270)
T TIGR00436 105 NLKRP-VVLTRNKLDNKF--KDKLL---PLIDKYAILEDF----KDIVPISALTGDNTSF---------------LAAFI 159 (270)
T ss_pred hcCCC-EEEEEECeeCCC--HHHHH---HHHHHHHhhcCC----CceEEEecCCCCCHHH---------------HHHHH
Confidence 66655 679999999974 22222 222222222233 2789999999999998 77777
Q ss_pred HhcCCCC-------CCCCCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCcEEEEEEEEEceEeeeeeccC
Q psy15197 388 DNFKTPS-------RPLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYVDEMSVSAAYAG 460 (902)
Q Consensus 388 ~~l~~p~-------~~~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~~~~~v~~a~aG 460 (902)
.+..++. ..++.+.++.+.++++ ++++..-..+.++...+.+...... .+
T Consensus 160 ~~~l~~~~~~~~~~~~t~~~~~~~~~e~ir--------------------e~~~~~~~~e~p~~~~~~~~~~~~~---~~ 216 (270)
T TIGR00436 160 EVHLPEGPFRYPEDYVTDQPDRFKISEIIR--------------------EKIIRYTKEEIPHSVRVEIERKSFN---EK 216 (270)
T ss_pred HHhCCCCCCCCCCcccCCCCHHHHHHHHHH--------------------HHHHHhcccccCceEEEEEEEEEEC---CC
Confidence 6654432 2246677777887777 5555455567777777777655443 23
Q ss_pred CeEEEeeeccccccceeeccccCCCC
Q psy15197 461 DNVSVTLLNYDQQNVSVGFLLSELSH 486 (902)
Q Consensus 461 div~I~l~~~~~~~i~kG~vL~~~~~ 486 (902)
+...|....+++++.++|.+|++.+.
T Consensus 217 ~~~~i~~~i~v~~~s~k~iiig~~g~ 242 (270)
T TIGR00436 217 GLLKIHALISVERESQKKIIIGKNGS 242 (270)
T ss_pred CeEEEEEEEEECcCCceeEEEcCCcH
Confidence 44667778889999999999998765
No 96
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.82 E-value=2.2e-19 Score=182.00 Aligned_cols=119 Identities=28% Similarity=0.363 Sum_probs=85.2
Q ss_pred ccCCeEEeeeEEEEEE-----CCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHH
Q psy15197 233 LNRGITMDVGQSQFET-----KTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVR 307 (902)
Q Consensus 233 ~~rGiTid~~~~~~~~-----~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~ 307 (902)
+.+|+|.+.....+.+ .+..++||||||+.+|...+..+++.+|++|+|+|++++.. .++...+..+.
T Consensus 44 ~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~-------~~~~~~~~~~~ 116 (179)
T cd01890 44 RERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVE-------AQTLANFYLAL 116 (179)
T ss_pred HHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCcc-------HhhHHHHHHHH
Confidence 5677887776665544 46789999999999999999999999999999999998732 34555555555
Q ss_pred HhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 308 SLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 308 ~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
..+++ +|+|+||+|+.+... .+..+++.+. .++. ..+++++||++|.|+++
T Consensus 117 ~~~~~-iiiv~NK~Dl~~~~~---~~~~~~~~~~---~~~~--~~~~~~~Sa~~g~gi~~ 167 (179)
T cd01890 117 ENNLE-IIPVINKIDLPSADP---ERVKQQIEDV---LGLD--PSEAILVSAKTGLGVED 167 (179)
T ss_pred HcCCC-EEEEEECCCCCcCCH---HHHHHHHHHH---hCCC--cccEEEeeccCCCCHHH
Confidence 56665 779999999864221 1222223222 2221 12589999999999998
No 97
>PRK15494 era GTPase Era; Provisional
Probab=99.82 E-value=8.4e-20 Score=204.59 Aligned_cols=196 Identities=21% Similarity=0.262 Sum_probs=137.1
Q ss_pred CCeEEeeeEEEEEECCeEEEEEeCCCccc--------hHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHH
Q psy15197 235 RGITMDVGQSQFETKTKYITLLDAPGHKD--------FIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLV 306 (902)
Q Consensus 235 rGiTid~~~~~~~~~~~~i~lIDTPG~~d--------f~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l 306 (902)
.++|++.....+.+++.+++||||||+.+ +...+..++..||++|+|+|+..+.. .....++..+
T Consensus 84 ~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~-------~~~~~il~~l 156 (339)
T PRK15494 84 VQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFD-------DITHNILDKL 156 (339)
T ss_pred CCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCC-------HHHHHHHHHH
Confidence 34566655566777889999999999854 33445556889999999999887522 3344555666
Q ss_pred HHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCcccHHHH
Q psy15197 307 RSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDV 386 (902)
Q Consensus 307 ~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~ 386 (902)
...+.++ |+|+||+|+.+. ...++ ...+.... ...+++++||++|.|+++ |++.
T Consensus 157 ~~~~~p~-IlViNKiDl~~~---~~~~~----~~~l~~~~---~~~~i~~iSAktg~gv~e---------------L~~~ 210 (339)
T PRK15494 157 RSLNIVP-IFLLNKIDIESK---YLNDI----KAFLTENH---PDSLLFPISALSGKNIDG---------------LLEY 210 (339)
T ss_pred HhcCCCE-EEEEEhhcCccc---cHHHH----HHHHHhcC---CCcEEEEEeccCccCHHH---------------HHHH
Confidence 6667665 489999998642 12222 22222221 123789999999999998 7777
Q ss_pred HHhcCCCC-------CCCCCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCcEEEEEEEEEceEeeeeecc
Q psy15197 387 IDNFKTPS-------RPLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYVDEMSVSAAYA 459 (902)
Q Consensus 387 L~~l~~p~-------~~~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~~~~~v~~a~a 459 (902)
|....++. ..++.|.++.+.++++ ++++..-..+.++...+.+...... .
T Consensus 211 L~~~l~~~~~~~~~~~~td~~~~~~~~eiiR--------------------e~~~~~~~~EiP~~~~v~i~~~~~~---~ 267 (339)
T PRK15494 211 ITSKAKISPWLYAEDDITDLPMRFIAAEITR--------------------EQLFLNLQKELPYKLTVQTEKWEDL---K 267 (339)
T ss_pred HHHhCCCCCCCCCCCCCCCCCHHHHHHHHHH--------------------HHHHhhCCcccCceEEEEEEEEEEc---C
Confidence 76654432 3347888999999888 6666666677888888877655442 2
Q ss_pred CCeEEEeeeccccccceeeccccCCCC
Q psy15197 460 GDNVSVTLLNYDQQNVSVGFLLSELSH 486 (902)
Q Consensus 460 Gdiv~I~l~~~~~~~i~kG~vL~~~~~ 486 (902)
++.+.|...++++++.++|++|++.+.
T Consensus 268 ~~~~~i~~~i~v~~~sqk~iiiG~~g~ 294 (339)
T PRK15494 268 DKSVKINQVIVVSRESYKTIILGKNGS 294 (339)
T ss_pred CCeEEEEEEEEECCCCceeEEEcCCcH
Confidence 345667788889999999999998765
No 98
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.82 E-value=3.5e-19 Score=176.96 Aligned_cols=124 Identities=35% Similarity=0.534 Sum_probs=93.1
Q ss_pred ccCCeEEeeeEEEEEEC-CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCC
Q psy15197 233 LNRGITMDVGQSQFETK-TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGV 311 (902)
Q Consensus 233 ~~rGiTid~~~~~~~~~-~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i 311 (902)
..+|+|++.....+.+. +..+.||||||+++|...+..++..+|++|+|+|++++. ..++.+.+..+...+.
T Consensus 32 ~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~-------~~~~~~~~~~~~~~~~ 104 (164)
T cd04171 32 KKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGI-------MPQTREHLEILELLGI 104 (164)
T ss_pred hccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCc-------cHhHHHHHHHHHHhCC
Confidence 34677888777777776 789999999999999998999999999999999998763 2456666666666676
Q ss_pred CeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 312 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 312 ~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+++|+|+||+|+.+. .......+++.+.++..+. ...+++++||++|.|+++
T Consensus 105 ~~~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~v~~ 156 (164)
T cd04171 105 KRGLVVLTKADLVDE--DWLELVEEEIRELLAGTFL--ADAPIFPVSAVTGEGIEE 156 (164)
T ss_pred CcEEEEEECccccCH--HHHHHHHHHHHHHHHhcCc--CCCcEEEEeCCCCcCHHH
Confidence 568899999999752 2233334445555544322 235899999999999998
No 99
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.79 E-value=8e-19 Score=190.77 Aligned_cols=84 Identities=29% Similarity=0.391 Sum_probs=74.6
Q ss_pred ccCCeEEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCC
Q psy15197 233 LNRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVN 312 (902)
Q Consensus 233 ~~rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~ 312 (902)
+.+|+|+......+.++++.++||||||+.+|...+..++..+|++|+|+|++.+. ..++...+..+...++|
T Consensus 46 ~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~-------~~~~~~~~~~~~~~~~p 118 (268)
T cd04170 46 IKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGV-------EVGTEKLWEFADEAGIP 118 (268)
T ss_pred HhhcccccceeEEEEECCEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCC-------CHHHHHHHHHHHHcCCC
Confidence 78899999999999999999999999999999999999999999999999999883 35777777778888877
Q ss_pred eEEEEEecCCCC
Q psy15197 313 QLGVVINKLDTV 324 (902)
Q Consensus 313 ~iIVviNKiDl~ 324 (902)
+++++||+|+.
T Consensus 119 -~iivvNK~D~~ 129 (268)
T cd04170 119 -RIIFINKMDRE 129 (268)
T ss_pred -EEEEEECCccC
Confidence 55899999954
No 100
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.78 E-value=5.6e-18 Score=172.36 Aligned_cols=125 Identities=37% Similarity=0.598 Sum_probs=96.7
Q ss_pred ccCCeEEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCC
Q psy15197 233 LNRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVN 312 (902)
Q Consensus 233 ~~rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~ 312 (902)
..+|+|++.....+.+.+..++||||||+.++...+..++..+|++++|+|+..+. ..+..+.+..+...+.+
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------~~~~~~~~~~~~~~~~~ 116 (189)
T cd00881 44 RERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGV-------QPQTREHLRIAREGGLP 116 (189)
T ss_pred HHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCC-------cHHHHHHHHHHHHCCCC
Confidence 56788888888888888999999999999999999999999999999999998873 24556666666665544
Q ss_pred eEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCC---------CCCCceEecCCCccCCCCCC
Q psy15197 313 QLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGF---------RDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 313 ~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~---------~~~~~~ii~iSA~~G~gI~~ 367 (902)
+++|+||+|+.. ++......+.+...++..+. .....+++++||++|.|+.+
T Consensus 117 -i~iv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~ 177 (189)
T cd00881 117 -IIVAINKIDRVG--EEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEE 177 (189)
T ss_pred -eEEEEECCCCcc--hhcHHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHH
Confidence 779999999975 23334444555555554432 22456899999999999998
No 101
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.78 E-value=1.3e-18 Score=195.01 Aligned_cols=122 Identities=24% Similarity=0.229 Sum_probs=91.9
Q ss_pred ccCCeEEeeeEEEEEECCeEEEEEeCCCccc--------hHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHH
Q psy15197 233 LNRGITMDVGQSQFETKTKYITLLDAPGHKD--------FIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHAL 304 (902)
Q Consensus 233 ~~rGiTid~~~~~~~~~~~~i~lIDTPG~~d--------f~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~ 304 (902)
.+.|+|+|.....+..+|+.+.++||+|+++ .+..+...+..||++++|+|++.+.. .+....+.
T Consensus 247 dI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~-------~~d~~~~~ 319 (454)
T COG0486 247 DIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLD-------KEDLALIE 319 (454)
T ss_pred CCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCc-------hhhHHHHH
Confidence 6899999999999999999999999999987 67788899999999999999998632 24444444
Q ss_pred HHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCcccHH
Q psy15197 305 LVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLL 384 (902)
Q Consensus 305 ~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Ll 384 (902)
+...+ +++++|+||+|+..... ... + + .. ...+++.+||++|+|++. |.
T Consensus 320 -~~~~~-~~~i~v~NK~DL~~~~~--~~~----~----~---~~-~~~~~i~iSa~t~~Gl~~---------------L~ 368 (454)
T COG0486 320 -LLPKK-KPIIVVLNKADLVSKIE--LES----E----K---LA-NGDAIISISAKTGEGLDA---------------LR 368 (454)
T ss_pred -hcccC-CCEEEEEechhcccccc--cch----h----h---cc-CCCceEEEEecCccCHHH---------------HH
Confidence 22333 44779999999986221 010 1 0 00 122689999999999998 78
Q ss_pred HHHHhcCC
Q psy15197 385 DVIDNFKT 392 (902)
Q Consensus 385 e~L~~l~~ 392 (902)
+.|.++..
T Consensus 369 ~~i~~~~~ 376 (454)
T COG0486 369 EAIKQLFG 376 (454)
T ss_pred HHHHHHHh
Confidence 87776544
No 102
>PRK00089 era GTPase Era; Reviewed
Probab=99.76 E-value=7.8e-18 Score=185.22 Aligned_cols=183 Identities=22% Similarity=0.334 Sum_probs=121.9
Q ss_pred ECCeEEEEEeCCCccc--------hHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEe
Q psy15197 248 TKTKYITLLDAPGHKD--------FIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVIN 319 (902)
Q Consensus 248 ~~~~~i~lIDTPG~~d--------f~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviN 319 (902)
.++.++.|+||||+.+ +...+..++..+|++++|+|++.+.. .....++..+...+.| +++|+|
T Consensus 50 ~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~-------~~~~~i~~~l~~~~~p-vilVlN 121 (292)
T PRK00089 50 EDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIG-------PGDEFILEKLKKVKTP-VILVLN 121 (292)
T ss_pred cCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCC-------hhHHHHHHHHhhcCCC-EEEEEE
Confidence 3557899999999865 34556677889999999999988522 3445555555555555 679999
Q ss_pred cCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCcccHHHHHHhcCCCC-----
Q psy15197 320 KLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNFKTPS----- 394 (902)
Q Consensus 320 KiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L~~l~~p~----- 394 (902)
|+|+... ...+....+.+. +..++ .+++++||++|.|+.+ |.+.|....++.
T Consensus 122 KiDl~~~-~~~l~~~~~~l~---~~~~~----~~i~~iSA~~~~gv~~---------------L~~~L~~~l~~~~~~y~ 178 (292)
T PRK00089 122 KIDLVKD-KEELLPLLEELS---ELMDF----AEIVPISALKGDNVDE---------------LLDVIAKYLPEGPPYYP 178 (292)
T ss_pred CCcCCCC-HHHHHHHHHHHH---hhCCC----CeEEEecCCCCCCHHH---------------HHHHHHHhCCCCCCCCC
Confidence 9999731 223333333332 22222 3789999999999998 777776554332
Q ss_pred --CCCCCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCcEEEEEEEEEceEeeeeeccCCeEEEeeecccc
Q psy15197 395 --RPLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYVDEMSVSAAYAGDNVSVTLLNYDQ 472 (902)
Q Consensus 395 --~~~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~~~~~v~~a~aGdiv~I~l~~~~~ 472 (902)
...+.+.++.+.++++ +.+...-..+.++...+.+...... | .+.|...++++
T Consensus 179 ~~~~td~~~r~~~~EiiR--------------------e~~~~~l~~e~p~~~~v~~~~~~~~----~-~~~i~~~i~v~ 233 (292)
T PRK00089 179 EDQITDRPERFLAAEIIR--------------------EKLLRLLGDELPYSVAVEIEKFEER----G-LVRIEATIYVE 233 (292)
T ss_pred CCCCCCCCHHHHHHHHHH--------------------HHHHhhCCccCCceEEEEEEEEEEC----C-eEEEEEEEEEc
Confidence 2235566666776665 3444444556677666666544432 3 45677778888
Q ss_pred ccceeeccccCCCC
Q psy15197 473 QNVSVGFLLSELSH 486 (902)
Q Consensus 473 ~~i~kG~vL~~~~~ 486 (902)
++.+++.++++.+.
T Consensus 234 ~~~~k~i~ig~~g~ 247 (292)
T PRK00089 234 RDSQKGIIIGKGGA 247 (292)
T ss_pred cCCceeEEEeCCcH
Confidence 99999999998764
No 103
>KOG1144|consensus
Probab=99.74 E-value=7.2e-18 Score=192.93 Aligned_cols=165 Identities=25% Similarity=0.413 Sum_probs=123.8
Q ss_pred EEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCC-Cch---
Q psy15197 252 YITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTV-SWS--- 327 (902)
Q Consensus 252 ~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~-~~~--- 327 (902)
.+.+||||||+.|.....++...||++|||||...| +.+||.+.+.+++..+.| +||++||+|.. +|.
T Consensus 541 g~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhG-------lepqtiESi~lLR~rktp-FivALNKiDRLYgwk~~p 612 (1064)
T KOG1144|consen 541 GLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHG-------LEPQTIESINLLRMRKTP-FIVALNKIDRLYGWKSCP 612 (1064)
T ss_pred eeEEecCCCchhhhhhhhccccccceEEEEeehhcc-------CCcchhHHHHHHHhcCCC-eEEeehhhhhhcccccCC
Confidence 478999999999999999999999999999999999 668999999999998876 77999999953 221
Q ss_pred ---------------HHHHHHHHHHHHHhhhhcCCC----------CCCceEecCCCccCCCCCCCCCCcccccccCccc
Q psy15197 328 ---------------QDRFQEIVTKLGAFLKQAGFR----------DSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPC 382 (902)
Q Consensus 328 ---------------~~~~~~i~~~l~~~l~~~~~~----------~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~ 382 (902)
...++.-.+.+..-+...|++ ..-+.++|+||.+|+||..
T Consensus 613 ~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipd--------------- 677 (1064)
T KOG1144|consen 613 NAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPD--------------- 677 (1064)
T ss_pred CchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHH---------------
Confidence 011111112222222223332 2346789999999999998
Q ss_pred HHHHHHhc----CCCCCCCCCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCC
Q psy15197 383 LLDVIDNF----KTPSRPLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQN 439 (902)
Q Consensus 383 Lle~L~~l----~~p~~~~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~ 439 (902)
|+-+|-++ +......-..+.+.|.++-.++|.|+.+-..+..|.|+.||.|.+.+.+
T Consensus 678 Ll~llv~ltQk~m~~kl~y~~ev~cTVlEVKvieG~GtTIDViLvNG~L~eGD~IvvcG~~ 738 (1064)
T KOG1144|consen 678 LLLLLVQLTQKTMVEKLAYVDEVQCTVLEVKVIEGHGTTIDVILVNGELHEGDQIVVCGLQ 738 (1064)
T ss_pred HHHHHHHHHHHHHHHHHhhhhheeeEEEEEEeecCCCceEEEEEEcceeccCCEEEEcCCC
Confidence 44444332 2222223456788999999999999999999999999999999987664
No 104
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.73 E-value=6e-17 Score=188.03 Aligned_cols=122 Identities=30% Similarity=0.334 Sum_probs=94.0
Q ss_pred ccCCeEEeeeEEEEEECCeEEEEEeCCCccc-----------hHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHH
Q psy15197 233 LNRGITMDVGQSQFETKTKYITLLDAPGHKD-----------FIPNMITGATQADVALLVVDATRGEFETGFESGGQTRE 301 (902)
Q Consensus 233 ~~rGiTid~~~~~~~~~~~~i~lIDTPG~~d-----------f~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~ 301 (902)
..+|+|++.....+.+++..+.||||||+.+ ....+..++..+|++|+|+|++.+.. .++..
T Consensus 203 ~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~-------~~~~~ 275 (435)
T PRK00093 203 DIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGIT-------EQDLR 275 (435)
T ss_pred CCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCC-------HHHHH
Confidence 3578899998888889999999999999754 12345678899999999999998843 57777
Q ss_pred HHHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCC
Q psy15197 302 HALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 368 (902)
Q Consensus 302 ~l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~ 368 (902)
++..+...+.+ +|+|+||+|+.+ ....+++.+++...+....+ +|++++||++|.|+.++
T Consensus 276 i~~~~~~~~~~-~ivv~NK~Dl~~--~~~~~~~~~~~~~~l~~~~~----~~i~~~SA~~~~gv~~l 335 (435)
T PRK00093 276 IAGLALEAGRA-LVIVVNKWDLVD--EKTMEEFKKELRRRLPFLDY----APIVFISALTGQGVDKL 335 (435)
T ss_pred HHHHHHHcCCc-EEEEEECccCCC--HHHHHHHHHHHHHhcccccC----CCEEEEeCCCCCCHHHH
Confidence 77777777755 779999999974 33445555556555544433 58999999999999983
No 105
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.73 E-value=5.8e-17 Score=187.78 Aligned_cols=123 Identities=31% Similarity=0.294 Sum_probs=93.9
Q ss_pred ccCCeEEeeeEEEEEECCeEEEEEeCCCccchH-----------HHHHHHHHHcCEEEEEEECCCCccccccCCchhhHH
Q psy15197 233 LNRGITMDVGQSQFETKTKYITLLDAPGHKDFI-----------PNMITGATQADVALLVVDATRGEFETGFESGGQTRE 301 (902)
Q Consensus 233 ~~rGiTid~~~~~~~~~~~~i~lIDTPG~~df~-----------~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~ 301 (902)
...|+|++.....+.+++..+.||||||+.++. ..+..+++.+|++|+|+|++++.+ .++..
T Consensus 202 ~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~-------~~~~~ 274 (429)
T TIGR03594 202 DIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGIT-------EQDLR 274 (429)
T ss_pred CCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCcc-------HHHHH
Confidence 346788888888888899999999999986532 234567889999999999998844 46777
Q ss_pred HHHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCC
Q psy15197 302 HALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 368 (902)
Q Consensus 302 ~l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~ 368 (902)
++..+...+.+ +|+|+||+|+.+ +....+++.+.+...+...++ ++++++||++|.|+.++
T Consensus 275 ~~~~~~~~~~~-iiiv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~----~~vi~~SA~~g~~v~~l 335 (429)
T TIGR03594 275 IAGLILEAGKA-LVIVVNKWDLVK-DEKTREEFKKELRRKLPFLDF----APIVFISALTGQGVDKL 335 (429)
T ss_pred HHHHHHHcCCc-EEEEEECcccCC-CHHHHHHHHHHHHHhcccCCC----CceEEEeCCCCCCHHHH
Confidence 77777777755 779999999983 244455666666555544433 58999999999999983
No 106
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.72 E-value=1.2e-17 Score=165.80 Aligned_cols=115 Identities=25% Similarity=0.323 Sum_probs=76.7
Q ss_pred ccCCeEEeeeEEEEEECCeEEEEEeCCCccch------HHHHHHHH--HHcCEEEEEEECCCCccccccCCchhhHHHHH
Q psy15197 233 LNRGITMDVGQSQFETKTKYITLLDAPGHKDF------IPNMITGA--TQADVALLVVDATRGEFETGFESGGQTREHAL 304 (902)
Q Consensus 233 ~~rGiTid~~~~~~~~~~~~i~lIDTPG~~df------~~~~~~~l--~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~ 304 (902)
.-+|+|++.....+.+.+..+.|+||||..++ .+-+..++ ...|++|+|+|++.- ........
T Consensus 29 n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l---------~r~l~l~~ 99 (156)
T PF02421_consen 29 NWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNL---------ERNLYLTL 99 (156)
T ss_dssp ESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGH---------HHHHHHHH
T ss_pred CCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCH---------HHHHHHHH
Confidence 34789999999999999999999999997551 12233333 479999999999863 24455566
Q ss_pred HHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 305 LVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 305 ~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.+.++++| +|+|+||+|++.... +.--.+.+. +.+++ |++++||++|.|+++
T Consensus 100 ql~e~g~P-~vvvlN~~D~a~~~g--~~id~~~Ls---~~Lg~-----pvi~~sa~~~~g~~~ 151 (156)
T PF02421_consen 100 QLLELGIP-VVVVLNKMDEAERKG--IEIDAEKLS---ERLGV-----PVIPVSARTGEGIDE 151 (156)
T ss_dssp HHHHTTSS-EEEEEETHHHHHHTT--EEE-HHHHH---HHHTS------EEEEBTTTTBTHHH
T ss_pred HHHHcCCC-EEEEEeCHHHHHHcC--CEECHHHHH---HHhCC-----CEEEEEeCCCcCHHH
Confidence 77788977 669999999763111 000012222 22344 999999999999988
No 107
>KOG0468|consensus
Probab=99.72 E-value=2.2e-16 Score=179.16 Aligned_cols=84 Identities=26% Similarity=0.352 Sum_probs=73.7
Q ss_pred cccCCeEEeeeEEEEEE-----CCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHH
Q psy15197 232 ALNRGITMDVGQSQFET-----KTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLV 306 (902)
Q Consensus 232 e~~rGiTid~~~~~~~~-----~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l 306 (902)
|++||.+|......+.. +.+.++|+|||||.+|..++..+++.+|++++|||+.+|++ -+++++++.+
T Consensus 173 E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVm-------lntEr~ikha 245 (971)
T KOG0468|consen 173 EQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVM-------LNTERIIKHA 245 (971)
T ss_pred hHhcCceEeecceEEEEecCcCceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCce-------eeHHHHHHHH
Confidence 38999999988887754 45789999999999999999999999999999999999966 4788888888
Q ss_pred HHhCCCeEEEEEecCCC
Q psy15197 307 RSLGVNQLGVVINKLDT 323 (902)
Q Consensus 307 ~~~~i~~iIVviNKiDl 323 (902)
-+...+ +++|+||+|+
T Consensus 246 iq~~~~-i~vviNKiDR 261 (971)
T KOG0468|consen 246 IQNRLP-IVVVINKVDR 261 (971)
T ss_pred HhccCc-EEEEEehhHH
Confidence 887766 6799999995
No 108
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.71 E-value=2e-16 Score=158.11 Aligned_cols=122 Identities=32% Similarity=0.468 Sum_probs=84.2
Q ss_pred CeEEeeeEEEEEEC---CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCC
Q psy15197 236 GITMDVGQSQFETK---TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVN 312 (902)
Q Consensus 236 GiTid~~~~~~~~~---~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~ 312 (902)
++|.+.....+.+. +..++||||||+.+|...+..++..+|++++|+|++++. ..++.+.+..+...++|
T Consensus 32 ~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~-------~~~~~~~~~~~~~~~~p 104 (168)
T cd01887 32 GITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGV-------MPQTIEAIKLAKAANVP 104 (168)
T ss_pred CeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCc-------cHHHHHHHHHHHHcCCC
Confidence 34444444444443 678999999999999888888999999999999999863 24666677777777766
Q ss_pred eEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 313 QLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 313 ~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+++|+||+|+.+............+..... ..+ ...++++++||++|.|+.+
T Consensus 105 -~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~Sa~~~~gi~~ 156 (168)
T cd01887 105 -FIVALNKIDKPNANPERVKNELSELGLQGE-DEW-GGDVQIVPTSAKTGEGIDD 156 (168)
T ss_pred -EEEEEEceecccccHHHHHHHHHHhhcccc-ccc-cCcCcEEEeecccCCCHHH
Confidence 679999999875333222222222211110 011 1346899999999999998
No 109
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.68 E-value=5.8e-16 Score=181.36 Aligned_cols=122 Identities=24% Similarity=0.234 Sum_probs=86.4
Q ss_pred cCCeEEeeeEEEEEECCeEEEEEeCCCccc---------hHHH--HHHHHHHcCEEEEEEECCCCccccccCCchhhHHH
Q psy15197 234 NRGITMDVGQSQFETKTKYITLLDAPGHKD---------FIPN--MITGATQADVALLVVDATRGEFETGFESGGQTREH 302 (902)
Q Consensus 234 ~rGiTid~~~~~~~~~~~~i~lIDTPG~~d---------f~~~--~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~ 302 (902)
..|+|+|.....+.+++..+.||||||+++ +... +..+++.||++|+|+|++++.. .+....
T Consensus 242 ~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s-------~~~~~~ 314 (472)
T PRK03003 242 VAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPIS-------EQDQRV 314 (472)
T ss_pred CCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCC-------HHHHHH
Confidence 467788887788888999999999999743 2222 3446789999999999998843 456666
Q ss_pred HHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCC
Q psy15197 303 ALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 369 (902)
Q Consensus 303 l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~ 369 (902)
+..+...+.+ +|||+||+|+.+. .....+.+++...+....+ +|++++||++|.|+.+++
T Consensus 315 ~~~~~~~~~p-iIiV~NK~Dl~~~--~~~~~~~~~i~~~l~~~~~----~~~~~~SAk~g~gv~~lf 374 (472)
T PRK03003 315 LSMVIEAGRA-LVLAFNKWDLVDE--DRRYYLEREIDRELAQVPW----APRVNISAKTGRAVDKLV 374 (472)
T ss_pred HHHHHHcCCC-EEEEEECcccCCh--hHHHHHHHHHHHhcccCCC----CCEEEEECCCCCCHHHHH
Confidence 6666666755 7799999999752 2223333344433333322 488999999999999843
No 110
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.68 E-value=7.9e-16 Score=153.57 Aligned_cols=119 Identities=30% Similarity=0.295 Sum_probs=79.2
Q ss_pred eEEeeeEEEEEECCeEEEEEeCCCccch----------H-HHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHH
Q psy15197 237 ITMDVGQSQFETKTKYITLLDAPGHKDF----------I-PNMITGATQADVALLVVDATRGEFETGFESGGQTREHALL 305 (902)
Q Consensus 237 iTid~~~~~~~~~~~~i~lIDTPG~~df----------~-~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~ 305 (902)
+|++.....+..++..+.+|||||+.+. . ..+...+..+|++|+|+|++.+.. .+....+..
T Consensus 36 ~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~-------~~~~~~~~~ 108 (174)
T cd01895 36 TTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGIT-------EQDLRIAGL 108 (174)
T ss_pred CccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcc-------hhHHHHHHH
Confidence 3444444456667788999999997543 1 234556778999999999988733 244445555
Q ss_pred HHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 306 VRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 306 l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+...+. ++++++||+|+.+........+.+.+...+...+ ..+++++||++|.|+.+
T Consensus 109 ~~~~~~-~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~~ 165 (174)
T cd01895 109 ILEEGK-ALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLD----YAPIVFISALTGQGVDK 165 (174)
T ss_pred HHhcCC-CEEEEEeccccCCccHHHHHHHHHHHHhhccccc----CCceEEEeccCCCCHHH
Confidence 555564 4779999999976432344444444444333221 24899999999999988
No 111
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.67 E-value=7.1e-16 Score=154.33 Aligned_cols=115 Identities=20% Similarity=0.197 Sum_probs=75.5
Q ss_pred eEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHH----HhCCCeEEEE
Q psy15197 242 GQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVR----SLGVNQLGVV 317 (902)
Q Consensus 242 ~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~----~~~i~~iIVv 317 (902)
....+.+++..+.+|||||+.++...+...+..+|++|+|+|+++... + ......+..+. ..++| ++++
T Consensus 41 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~---~---~~~~~~~~~~~~~~~~~~~p-~ilv 113 (167)
T cd04160 41 NIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRER---F---EESKSALEKVLRNEALEGVP-LLIL 113 (167)
T ss_pred ceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHH---H---HHHHHHHHHHHhChhhcCCC-EEEE
Confidence 334566678999999999999999988899999999999999986511 0 11122222211 12444 7799
Q ss_pred EecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 318 INKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 318 iNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+||+|+... ....++.+.+....+..+. ..++++++||++|.|+++
T Consensus 114 ~NK~D~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~g~gv~e 159 (167)
T cd04160 114 ANKQDLPDA--LSVEEIKEVFQDKAEEIGR--RDCLVLPVSALEGTGVRE 159 (167)
T ss_pred EEccccccC--CCHHHHHHHhccccccccC--CceEEEEeeCCCCcCHHH
Confidence 999998642 1122222222222222221 346899999999999988
No 112
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.64 E-value=1.5e-15 Score=176.47 Aligned_cols=107 Identities=22% Similarity=0.201 Sum_probs=76.0
Q ss_pred cCCeEEeeeEEEEEECCeEEEEEeCCCccchH--------HHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHH
Q psy15197 234 NRGITMDVGQSQFETKTKYITLLDAPGHKDFI--------PNMITGATQADVALLVVDATRGEFETGFESGGQTREHALL 305 (902)
Q Consensus 234 ~rGiTid~~~~~~~~~~~~i~lIDTPG~~df~--------~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~ 305 (902)
..|+|+|.....+.+++..++|+||||++++. ..+...+..+|++|+|+|++.+.. ......+..
T Consensus 246 ~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s-------~~~~~~l~~ 318 (449)
T PRK05291 246 IAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLT-------EEDDEILEE 318 (449)
T ss_pred CCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCC-------hhHHHHHHh
Confidence 46788888888888999999999999997632 335567889999999999987632 122222222
Q ss_pred HHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 306 VRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 306 l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
..+ .++|+|+||+|+.+.... . .. ...+++++||++|.|+++
T Consensus 319 --~~~-~piiiV~NK~DL~~~~~~--~----------~~-----~~~~~i~iSAktg~GI~~ 360 (449)
T PRK05291 319 --LKD-KPVIVVLNKADLTGEIDL--E----------EE-----NGKPVIRISAKTGEGIDE 360 (449)
T ss_pred --cCC-CCcEEEEEhhhccccchh--h----------hc-----cCCceEEEEeeCCCCHHH
Confidence 224 457799999999742111 0 11 123789999999999998
No 113
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.63 E-value=3.6e-15 Score=146.84 Aligned_cols=111 Identities=25% Similarity=0.269 Sum_probs=78.8
Q ss_pred CeEEeeeEEEEEECCeEEEEEeCCCccchHH--------HHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHH
Q psy15197 236 GITMDVGQSQFETKTKYITLLDAPGHKDFIP--------NMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVR 307 (902)
Q Consensus 236 GiTid~~~~~~~~~~~~i~lIDTPG~~df~~--------~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~ 307 (902)
++|.+.......+.++.+.+|||||+.++.. .+...+..+|++++|+|+..+.. .....+...++
T Consensus 30 ~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~-------~~~~~~~~~~~ 102 (157)
T cd01894 30 GVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLT-------PADEEIAKYLR 102 (157)
T ss_pred CceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCC-------ccHHHHHHHHH
Confidence 4566666666777889999999999988433 45667889999999999987632 24445566666
Q ss_pred HhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 308 SLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 308 ~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
..+.| +++|+||+|+.+.... .. .+...+.. +++++|+++|.|+++
T Consensus 103 ~~~~p-iiiv~nK~D~~~~~~~-----~~----~~~~~~~~----~~~~~Sa~~~~gv~~ 148 (157)
T cd01894 103 KSKKP-VILVVNKVDNIKEEDE-----AA----EFYSLGFG----EPIPISAEHGRGIGD 148 (157)
T ss_pred hcCCC-EEEEEECcccCChHHH-----HH----HHHhcCCC----CeEEEecccCCCHHH
Confidence 66755 7799999999753211 11 12223332 679999999999988
No 114
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.63 E-value=2.8e-15 Score=173.75 Aligned_cols=113 Identities=27% Similarity=0.299 Sum_probs=87.0
Q ss_pred cCCeEEeeeEEEEEECCeEEEEEeCCCc--------cchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHH
Q psy15197 234 NRGITMDVGQSQFETKTKYITLLDAPGH--------KDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALL 305 (902)
Q Consensus 234 ~rGiTid~~~~~~~~~~~~i~lIDTPG~--------~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~ 305 (902)
..|+|++.....+.+.+..+.||||||+ ..+...+..++..+|++|+|+|+..+.. ..+.++..+
T Consensus 30 ~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~-------~~d~~i~~~ 102 (429)
T TIGR03594 30 TPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLT-------PEDEEIAKW 102 (429)
T ss_pred CCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCC-------HHHHHHHHH
Confidence 4678888888889999999999999997 3466778888999999999999998743 466677777
Q ss_pred HHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 306 VRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 306 l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
++..+.| +|+|+||+|+.+.... ..+ +..+++. +++++||++|.|+.+
T Consensus 103 l~~~~~p-iilVvNK~D~~~~~~~-----~~~----~~~lg~~----~~~~vSa~~g~gv~~ 150 (429)
T TIGR03594 103 LRKSGKP-VILVANKIDGKKEDAV-----AAE----FYSLGFG----EPIPISAEHGRGIGD 150 (429)
T ss_pred HHHhCCC-EEEEEECccCCccccc-----HHH----HHhcCCC----CeEEEeCCcCCChHH
Confidence 7777765 7799999998742211 111 2234442 679999999999998
No 115
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.63 E-value=4.5e-15 Score=181.76 Aligned_cols=120 Identities=20% Similarity=0.171 Sum_probs=85.1
Q ss_pred cCCeEEeeeEEEEEECCeEEEEEeCCCccc---------hHHH--HHHHHHHcCEEEEEEECCCCccccccCCchhhHHH
Q psy15197 234 NRGITMDVGQSQFETKTKYITLLDAPGHKD---------FIPN--MITGATQADVALLVVDATRGEFETGFESGGQTREH 302 (902)
Q Consensus 234 ~rGiTid~~~~~~~~~~~~i~lIDTPG~~d---------f~~~--~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~ 302 (902)
..|+|++.....+.+++..+.||||||+.+ +... +..++..+|++|+|+|++.+.. .+....
T Consensus 481 ~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s-------~~~~~i 553 (712)
T PRK09518 481 LAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPIS-------EQDLKV 553 (712)
T ss_pred CCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCC-------HHHHHH
Confidence 457788887777888999999999999753 2222 3456788999999999998843 466666
Q ss_pred HHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 303 ALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 303 l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+..+...+.+ +|+|+||+|+.+. ...+.+.+.+...+....+ .+++++||++|.|+.+
T Consensus 554 ~~~~~~~~~p-iIiV~NK~DL~~~--~~~~~~~~~~~~~l~~~~~----~~ii~iSAktg~gv~~ 611 (712)
T PRK09518 554 MSMAVDAGRA-LVLVFNKWDLMDE--FRRQRLERLWKTEFDRVTW----ARRVNLSAKTGWHTNR 611 (712)
T ss_pred HHHHHHcCCC-EEEEEEchhcCCh--hHHHHHHHHHHHhccCCCC----CCEEEEECCCCCCHHH
Confidence 6666666755 7799999999752 2223333334333333323 4789999999999998
No 116
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.62 E-value=5.6e-15 Score=166.21 Aligned_cols=112 Identities=27% Similarity=0.277 Sum_probs=73.1
Q ss_pred CCeEEeeeEEEEEE-CCeEEEEEeCCCccc--------hHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHH
Q psy15197 235 RGITMDVGQSQFET-KTKYITLLDAPGHKD--------FIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALL 305 (902)
Q Consensus 235 rGiTid~~~~~~~~-~~~~i~lIDTPG~~d--------f~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~ 305 (902)
.++|+|+....+.+ ++..+.|+||||+.+ -...+...+..||++|+|+|++++... .+.......
T Consensus 220 ~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~------~~~~~~~~~ 293 (351)
T TIGR03156 220 LFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDRE------EQIEAVEKV 293 (351)
T ss_pred CccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchH------HHHHHHHHH
Confidence 45677777777777 568999999999822 233455678899999999999876321 122222334
Q ss_pred HHHhC--CCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 306 VRSLG--VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 306 l~~~~--i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+...+ ..++|+|+||+|+.+. .... .. .. .. .+++++||++|.|+++
T Consensus 294 L~~l~~~~~piIlV~NK~Dl~~~--~~v~----~~---~~--~~----~~~i~iSAktg~GI~e 342 (351)
T TIGR03156 294 LEELGAEDIPQLLVYNKIDLLDE--PRIE----RL---EE--GY----PEAVFVSAKTGEGLDL 342 (351)
T ss_pred HHHhccCCCCEEEEEEeecCCCh--HhHH----HH---Hh--CC----CCEEEEEccCCCCHHH
Confidence 44443 2457799999999741 1111 11 11 11 2579999999999998
No 117
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.62 E-value=2.8e-15 Score=151.62 Aligned_cols=109 Identities=21% Similarity=0.268 Sum_probs=71.7
Q ss_pred EEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHH-HHHH---HhCCCeEEEEEecC
Q psy15197 246 FETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHA-LLVR---SLGVNQLGVVINKL 321 (902)
Q Consensus 246 ~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l-~~l~---~~~i~~iIVviNKi 321 (902)
+..++..+.+|||||+.++...+...+..+|++|+|+|+++... |. .....+ .++. ..+ .+++||+||+
T Consensus 53 ~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~-~p~iiv~nK~ 125 (173)
T cd04154 53 LEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLR---LD---DCKRELKELLQEERLAG-ATLLILANKQ 125 (173)
T ss_pred EEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHhChhhcC-CCEEEEEECc
Confidence 33457889999999999988888888999999999999987511 10 111112 2221 124 4577999999
Q ss_pred CCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 322 DTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 322 Dl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
|+.... ..+ ++...++........++++++||++|.|+++
T Consensus 126 Dl~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 165 (173)
T cd04154 126 DLPGAL--SEE----EIREALELDKISSHHWRIQPCSAVTGEGLLQ 165 (173)
T ss_pred ccccCC--CHH----HHHHHhCccccCCCceEEEeccCCCCcCHHH
Confidence 986421 111 2222332222223456899999999999988
No 118
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.62 E-value=1.5e-14 Score=147.60 Aligned_cols=102 Identities=18% Similarity=0.175 Sum_probs=70.9
Q ss_pred EEEEEeCCCcc----------chHHHHHHHHH---HcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEE
Q psy15197 252 YITLLDAPGHK----------DFIPNMITGAT---QADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVI 318 (902)
Q Consensus 252 ~i~lIDTPG~~----------df~~~~~~~l~---~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVvi 318 (902)
.+.||||||+. ++...+...++ .+|++|+|+|++.+.. ..+...+..+...+.| +++++
T Consensus 65 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~-------~~~~~~~~~~~~~~~p-viiv~ 136 (179)
T TIGR03598 65 GFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLK-------ELDLEMLEWLRERGIP-VLIVL 136 (179)
T ss_pred cEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCC-------HHHHHHHHHHHHcCCC-EEEEE
Confidence 69999999963 23333334444 4689999999988733 4555666677767765 77999
Q ss_pred ecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCC
Q psy15197 319 NKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLT 366 (902)
Q Consensus 319 NKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~ 366 (902)
||+|+.+ ........+++...++..+. ..+++++||++|+|++
T Consensus 137 nK~D~~~--~~~~~~~~~~i~~~l~~~~~---~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 137 TKADKLK--KSELNKQLKKIKKALKKDAD---DPSVQLFSSLKKTGID 179 (179)
T ss_pred ECcccCC--HHHHHHHHHHHHHHHhhccC---CCceEEEECCCCCCCC
Confidence 9999975 33344455566666655432 3479999999999984
No 119
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.61 E-value=7.7e-15 Score=147.11 Aligned_cols=110 Identities=20% Similarity=0.192 Sum_probs=67.2
Q ss_pred EEEEEECCe-EEEEEeCCCccc-------hHHHHHHHHHHcCEEEEEEECCCC-ccccccCCchhhHHHHHHHHHh----
Q psy15197 243 QSQFETKTK-YITLLDAPGHKD-------FIPNMITGATQADVALLVVDATRG-EFETGFESGGQTREHALLVRSL---- 309 (902)
Q Consensus 243 ~~~~~~~~~-~i~lIDTPG~~d-------f~~~~~~~l~~aD~aIlVVDa~~g-~~E~~~~~~~qt~~~l~~l~~~---- 309 (902)
...+.+++. .+.|+||||+.+ +...+...+..+|++++|+|++.. ... .........+...
T Consensus 39 ~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~------~~~~~~~~~l~~~~~~~ 112 (170)
T cd01898 39 LGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPV------EDYKTIRNELELYNPEL 112 (170)
T ss_pred ceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHH------HHHHHHHHHHHHhCccc
Confidence 334455565 899999999742 344555667789999999999875 110 1222223333322
Q ss_pred CCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 310 GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 310 ~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
..+++++|+||+|+.+.. ...+ .+...+... ...+++++||++|.|+.+
T Consensus 113 ~~~p~ivv~NK~Dl~~~~--~~~~---~~~~~~~~~----~~~~~~~~Sa~~~~gi~~ 161 (170)
T cd01898 113 LEKPRIVVLNKIDLLDEE--ELFE---LLKELLKEL----WGKPVFPISALTGEGLDE 161 (170)
T ss_pred cccccEEEEEchhcCCch--hhHH---HHHHHHhhC----CCCCEEEEecCCCCCHHH
Confidence 124567999999987521 1122 122222221 124789999999999998
No 120
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.60 E-value=1e-14 Score=143.41 Aligned_cols=107 Identities=25% Similarity=0.276 Sum_probs=72.4
Q ss_pred CCeEEeeeEEEEEECCeEEEEEeCCCccchH--------HHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHH
Q psy15197 235 RGITMDVGQSQFETKTKYITLLDAPGHKDFI--------PNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLV 306 (902)
Q Consensus 235 rGiTid~~~~~~~~~~~~i~lIDTPG~~df~--------~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l 306 (902)
.|+|.+.....+.+.+..++++||||+.++. ..+...+..+|++++|+|++... .......+
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~----------~~~~~~~~ 102 (157)
T cd04164 33 AGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGL----------DEEDLEIL 102 (157)
T ss_pred CCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCC----------CHHHHHHH
Confidence 3455555556677778899999999987643 23556778999999999999752 22222223
Q ss_pred HHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 307 RSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 307 ~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
......++|+|+||+|+.+.... .. .....+++++||+++.|+.+
T Consensus 103 ~~~~~~~vi~v~nK~D~~~~~~~-----------~~-----~~~~~~~~~~Sa~~~~~v~~ 147 (157)
T cd04164 103 ELPADKPIIVVLNKSDLLPDSEL-----------LS-----LLAGKPIIAISAKTGEGLDE 147 (157)
T ss_pred HhhcCCCEEEEEEchhcCCcccc-----------cc-----ccCCCceEEEECCCCCCHHH
Confidence 32333557899999999752211 01 11234899999999999998
No 121
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.60 E-value=8.4e-15 Score=171.59 Aligned_cols=113 Identities=25% Similarity=0.273 Sum_probs=82.5
Q ss_pred cCCeEEeeeEEEEEECCeEEEEEeCCCccc--------hHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHH
Q psy15197 234 NRGITMDVGQSQFETKTKYITLLDAPGHKD--------FIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALL 305 (902)
Q Consensus 234 ~rGiTid~~~~~~~~~~~~i~lIDTPG~~d--------f~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~ 305 (902)
..|+|++.....+.+.+..+.||||||+.. +...+..++..||++|+|+|++.+.. .........
T Consensus 69 ~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s-------~~~~~i~~~ 141 (472)
T PRK03003 69 VPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGAT-------ATDEAVARV 141 (472)
T ss_pred CCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCC-------HHHHHHHHH
Confidence 467888888888899999999999999863 45567778899999999999998743 234556666
Q ss_pred HHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 306 VRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 306 l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+...+.| +|+|+||+|+..... +. .+ + ...++. ..+++||++|.|+.+
T Consensus 142 l~~~~~p-iilV~NK~Dl~~~~~----~~-~~---~-~~~g~~----~~~~iSA~~g~gi~e 189 (472)
T PRK03003 142 LRRSGKP-VILAANKVDDERGEA----DA-AA---L-WSLGLG----EPHPVSALHGRGVGD 189 (472)
T ss_pred HHHcCCC-EEEEEECccCCccch----hh-HH---H-HhcCCC----CeEEEEcCCCCCcHH
Confidence 6666655 779999999864211 11 11 1 123332 246899999999998
No 122
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.60 E-value=7.9e-15 Score=146.86 Aligned_cols=109 Identities=19% Similarity=0.212 Sum_probs=71.7
Q ss_pred EEEEECC--eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh---CCCeEEEEE
Q psy15197 244 SQFETKT--KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL---GVNQLGVVI 318 (902)
Q Consensus 244 ~~~~~~~--~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~---~i~~iIVvi 318 (902)
..+.+++ ..+.||||||+.+|...+...++.+|++|+|+|+++... |+ .....+..+... ++ ++|+|+
T Consensus 43 ~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~-p~ivv~ 115 (165)
T cd01864 43 KTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSS---FE---SVPHWIEEVEKYGASNV-VLLLIG 115 (165)
T ss_pred EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHH---HH---hHHHHHHHHHHhCCCCC-cEEEEE
Confidence 3444555 578999999999998888888999999999999987622 11 112233333332 33 477999
Q ss_pred ecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 319 NKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 319 NKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
||+|+........ ++...+.+..+. ..++++||++|.|+.+
T Consensus 116 nK~Dl~~~~~~~~----~~~~~~~~~~~~----~~~~e~Sa~~~~~v~~ 156 (165)
T cd01864 116 NKCDLEEQREVLF----EEACTLAEKNGM----LAVLETSAKESQNVEE 156 (165)
T ss_pred ECcccccccccCH----HHHHHHHHHcCC----cEEEEEECCCCCCHHH
Confidence 9999874221111 122222333332 3689999999999998
No 123
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.59 E-value=1.8e-14 Score=144.20 Aligned_cols=99 Identities=21% Similarity=0.176 Sum_probs=68.6
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh--CCCeEEEEEecCCCCCch
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL--GVNQLGVVINKLDTVSWS 327 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~--~i~~iIVviNKiDl~~~~ 327 (902)
...+.||||||+.+|...+...++.+|++|+|+|++++... ......+..+... ++ ++|+|+||+|+...
T Consensus 48 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~i~~~~~~~-p~ivv~nK~Dl~~~- 119 (161)
T cd04124 48 TILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITY------KNLSKWYEELREYRPEI-PCIVVANKIDLDPS- 119 (161)
T ss_pred EEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHH------HHHHHHHHHHHHhCCCC-cEEEEEECccCchh-
Confidence 45788999999999999999999999999999999876221 1122333334333 44 47799999998531
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 328 QDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 328 ~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.. .+...+.+..+ ++++++||++|.|+.+
T Consensus 120 --~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~ 148 (161)
T cd04124 120 --VT----QKKFNFAEKHN-----LPLYYVSAADGTNVVK 148 (161)
T ss_pred --HH----HHHHHHHHHcC-----CeEEEEeCCCCCCHHH
Confidence 11 11112222222 3889999999999998
No 124
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.59 E-value=5.9e-15 Score=145.80 Aligned_cols=113 Identities=26% Similarity=0.348 Sum_probs=75.9
Q ss_pred CCeEEeeeEEEEEECCeEEEEEeCCCccchHH------HHHHHHH--HcCEEEEEEECCCCccccccCCchhhHHHHHHH
Q psy15197 235 RGITMDVGQSQFETKTKYITLLDAPGHKDFIP------NMITGAT--QADVALLVVDATRGEFETGFESGGQTREHALLV 306 (902)
Q Consensus 235 rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~------~~~~~l~--~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l 306 (902)
.|+|++.....+++++..+.||||||+.++.. .+...+. .+|++|+|+|++... .....+..+
T Consensus 27 ~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~---------~~~~~~~~~ 97 (158)
T cd01879 27 PGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLE---------RNLYLTLQL 97 (158)
T ss_pred CCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcch---------hHHHHHHHH
Confidence 45677766677788888999999999987543 2344443 899999999998641 223333444
Q ss_pred HHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 307 RSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 307 ~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
...+++ +|+|+||+|+.+... ... ....+.+..+ .+++++||++|.|+.+
T Consensus 98 ~~~~~~-~iiv~NK~Dl~~~~~--~~~---~~~~~~~~~~-----~~~~~iSa~~~~~~~~ 147 (158)
T cd01879 98 LELGLP-VVVALNMIDEAEKRG--IKI---DLDKLSELLG-----VPVVPTSARKGEGIDE 147 (158)
T ss_pred HHcCCC-EEEEEehhhhccccc--chh---hHHHHHHhhC-----CCeEEEEccCCCCHHH
Confidence 556655 779999999975221 111 1112222233 3789999999999998
No 125
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.58 E-value=1.6e-14 Score=143.71 Aligned_cols=101 Identities=18% Similarity=0.151 Sum_probs=67.6
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHH----hCCCeEEEEEecCCCCCc
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRS----LGVNQLGVVINKLDTVSW 326 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~----~~i~~iIVviNKiDl~~~ 326 (902)
..+.+|||||+.+|...+...++.+|++++|+|+++... |. .....+..+.. .++ ++|+++||+|+...
T Consensus 50 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~-piiiv~NK~Dl~~~ 122 (164)
T cd04145 50 AILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGS---FE---EVDKFHTQILRVKDRDEF-PMILVGNKADLEHQ 122 (164)
T ss_pred EEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-CEEEEeeCcccccc
Confidence 578899999999999988899999999999999987521 11 11112222222 234 47799999998642
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 327 SQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 327 ~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
..... ++...+.+..+ ++++++||++|.|+.+
T Consensus 123 ~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 154 (164)
T cd04145 123 RKVSR----EEGQELARKLK-----IPYIETSAKDRLNVDK 154 (164)
T ss_pred ceecH----HHHHHHHHHcC-----CcEEEeeCCCCCCHHH
Confidence 11111 12223333333 3789999999999998
No 126
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.58 E-value=1.1e-14 Score=144.89 Aligned_cols=111 Identities=23% Similarity=0.197 Sum_probs=71.2
Q ss_pred EEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh--CCCeEEEEEecCCC
Q psy15197 246 FETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL--GVNQLGVVINKLDT 323 (902)
Q Consensus 246 ~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~--~i~~iIVviNKiDl 323 (902)
+...+..+.||||||+.+|...+...+..+|++|+|+|+++... ..........+++.. ...++++|+||+|+
T Consensus 38 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~-----~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl 112 (158)
T cd04151 38 VTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDR-----LGTAKEELHAMLEEEELKGAVLLVFANKQDM 112 (158)
T ss_pred EEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHH-----HHHHHHHHHHHHhchhhcCCcEEEEEeCCCC
Confidence 34467889999999999998888889999999999999987411 000112222222221 12457899999998
Q ss_pred CCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 324 VSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 324 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.+.. ...++.+.+ ..........+++++||++|.|+.+
T Consensus 113 ~~~~--~~~~i~~~~----~~~~~~~~~~~~~~~Sa~~~~gi~~ 150 (158)
T cd04151 113 PGAL--SEAEISEKL----GLSELKDRTWSIFKTSAIKGEGLDE 150 (158)
T ss_pred CCCC--CHHHHHHHh----CccccCCCcEEEEEeeccCCCCHHH
Confidence 6421 112222221 1111112235799999999999998
No 127
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.58 E-value=3.9e-14 Score=147.28 Aligned_cols=104 Identities=24% Similarity=0.296 Sum_probs=64.3
Q ss_pred EEEEECCe-EEEEEeCCCccch--------HHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhC--CC
Q psy15197 244 SQFETKTK-YITLLDAPGHKDF--------IPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLG--VN 312 (902)
Q Consensus 244 ~~~~~~~~-~i~lIDTPG~~df--------~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~--i~ 312 (902)
..+.+.+. .+.||||||+.+. ...+...+..+|++++|+|++.+... .+.......+...+ ..
T Consensus 81 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~------~~~~~~~~~l~~~~~~~~ 154 (204)
T cd01878 81 RRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYE------EQIETVEKVLKELGAEDI 154 (204)
T ss_pred EEEEecCCceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChh------hHHHHHHHHHHHcCcCCC
Confidence 33444443 8999999998431 12233446689999999999876321 12222333343332 24
Q ss_pred eEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 313 QLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 313 ~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
++++|+||+|+.+... .. ..+.. ...+++++||++|.|+.+
T Consensus 155 ~viiV~NK~Dl~~~~~--~~-------~~~~~-----~~~~~~~~Sa~~~~gi~~ 195 (204)
T cd01878 155 PMILVLNKIDLLDDEE--LE-------ERLEA-----GRPDAVFISAKTGEGLDE 195 (204)
T ss_pred CEEEEEEccccCChHH--HH-------HHhhc-----CCCceEEEEcCCCCCHHH
Confidence 5779999999975211 11 11111 124789999999999998
No 128
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.58 E-value=1.8e-14 Score=143.13 Aligned_cols=109 Identities=18% Similarity=0.187 Sum_probs=70.6
Q ss_pred EEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHH-H-----HhCCCeEEEEEe
Q psy15197 246 FETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLV-R-----SLGVNQLGVVIN 319 (902)
Q Consensus 246 ~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l-~-----~~~i~~iIVviN 319 (902)
+.+.+..+.|+||||+.+|...+..++..+|++|+|+|+++... + ......+..+ . ..++ ++++|+|
T Consensus 40 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~-p~iiv~N 112 (162)
T cd04157 40 FEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLR---L---VVVKDELELLLNHPDIKHRRV-PILFFAN 112 (162)
T ss_pred EEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHH---H---HHHHHHHHHHHcCcccccCCC-CEEEEEe
Confidence 34567899999999999999999999999999999999987521 1 0111122222 1 1244 4779999
Q ss_pred cCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 320 KLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 320 KiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
|+|+.+... ..++.. .+.........++++++||++|.|+++
T Consensus 113 K~Dl~~~~~--~~~~~~----~l~~~~~~~~~~~~~~~Sa~~g~gv~~ 154 (162)
T cd04157 113 KMDLPDALT--AVKITQ----LLGLENIKDKPWHIFASNALTGEGLDE 154 (162)
T ss_pred CccccCCCC--HHHHHH----HhCCccccCceEEEEEeeCCCCCchHH
Confidence 999875211 111111 111111111234689999999999998
No 129
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.58 E-value=2.7e-14 Score=165.87 Aligned_cols=113 Identities=24% Similarity=0.238 Sum_probs=82.4
Q ss_pred cCCeEEeeeEEEEEECCeEEEEEeCCCccc--------hHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHH
Q psy15197 234 NRGITMDVGQSQFETKTKYITLLDAPGHKD--------FIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALL 305 (902)
Q Consensus 234 ~rGiTid~~~~~~~~~~~~i~lIDTPG~~d--------f~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~ 305 (902)
..|+|++.....+.+.+..+.||||||+.+ +...+..++..+|++|+|+|++.+.. ....+...+
T Consensus 32 ~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~-------~~~~~~~~~ 104 (435)
T PRK00093 32 TPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLT-------PADEEIAKI 104 (435)
T ss_pred CCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCC-------HHHHHHHHH
Confidence 356777777778888899999999999987 44446678889999999999998733 345556667
Q ss_pred HHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 306 VRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 306 l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+...+.| +|+|+||+|+.+. .... .++ ..+++. .++++||++|.|+.+
T Consensus 105 l~~~~~p-iilv~NK~D~~~~-~~~~----~~~----~~lg~~----~~~~iSa~~g~gv~~ 152 (435)
T PRK00093 105 LRKSNKP-VILVVNKVDGPDE-EADA----YEF----YSLGLG----EPYPISAEHGRGIGD 152 (435)
T ss_pred HHHcCCc-EEEEEECccCccc-hhhH----HHH----HhcCCC----CCEEEEeeCCCCHHH
Confidence 7777755 7799999997541 1111 111 123442 468999999999988
No 130
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.58 E-value=2.9e-14 Score=141.59 Aligned_cols=116 Identities=22% Similarity=0.180 Sum_probs=75.2
Q ss_pred eEEeeeEEEEEECC--eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHH-HhC-CC
Q psy15197 237 ITMDVGQSQFETKT--KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVR-SLG-VN 312 (902)
Q Consensus 237 iTid~~~~~~~~~~--~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~-~~~-i~ 312 (902)
++++.....+.+++ ..+.+|||||+.++...+...++.+|++|+|+|.++... | ......+..+. ..+ -.
T Consensus 33 ~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~ 106 (161)
T cd01861 33 IGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQS---F---DNTDKWIDDVRDERGNDV 106 (161)
T ss_pred eeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhCCCCC
Confidence 44555555555555 468999999999998888889999999999999987521 1 11222233222 222 14
Q ss_pred eEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 313 QLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 313 ~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
++++++||+|+........ ++...+.+..+ ++++++||++|.|+.+
T Consensus 107 ~iilv~nK~D~~~~~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~ 152 (161)
T cd01861 107 IIVLVGNKTDLSDKRQVST----EEGEKKAKELN-----AMFIETSAKAGHNVKE 152 (161)
T ss_pred EEEEEEEChhccccCccCH----HHHHHHHHHhC-----CEEEEEeCCCCCCHHH
Confidence 5889999999853211111 11222222222 4789999999999998
No 131
>KOG1191|consensus
Probab=99.58 E-value=6.5e-15 Score=164.67 Aligned_cols=122 Identities=27% Similarity=0.239 Sum_probs=83.3
Q ss_pred ccCCeEEeeeEEEEEECCeEEEEEeCCCccc---------hHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHH
Q psy15197 233 LNRGITMDVGQSQFETKTKYITLLDAPGHKD---------FIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHA 303 (902)
Q Consensus 233 ~~rGiTid~~~~~~~~~~~~i~lIDTPG~~d---------f~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l 303 (902)
.+.|+|+|.....++.+|+++.|+||+|.++ -+......+..||++++|||+..+.++ +...+.
T Consensus 298 pv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~-------sd~~i~ 370 (531)
T KOG1191|consen 298 PVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTE-------SDLKIA 370 (531)
T ss_pred CCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccc-------cchHHH
Confidence 6799999999999999999999999999987 566677888999999999999877554 333333
Q ss_pred HHHHHhC-----C------CeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceE-ecCCCccCCCCCC
Q psy15197 304 LLVRSLG-----V------NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEY-VPCSGLTGENLTT 367 (902)
Q Consensus 304 ~~l~~~~-----i------~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~i-i~iSA~~G~gI~~ 367 (902)
..+...+ . .++|+++||+|+...- .++......+....+. ...++ ..+|+++++|+..
T Consensus 371 ~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~----~~~~~~~~~~~~~~~~--~~~~i~~~vs~~tkeg~~~ 440 (531)
T KOG1191|consen 371 RILETEGVGLVVIVNKMEKQRIILVANKSDLVSKI----PEMTKIPVVYPSAEGR--SVFPIVVEVSCTTKEGCER 440 (531)
T ss_pred HHHHHhccceEEEeccccccceEEEechhhccCcc----ccccCCceeccccccC--cccceEEEeeechhhhHHH
Confidence 4444332 1 4577899999986420 1111101111111111 12344 4599999999998
No 132
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.57 E-value=3.8e-14 Score=163.97 Aligned_cols=109 Identities=21% Similarity=0.240 Sum_probs=75.5
Q ss_pred cCCeEEeeeEEEEEECCeEEEEEeCCCccchH--------HHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHH
Q psy15197 234 NRGITMDVGQSQFETKTKYITLLDAPGHKDFI--------PNMITGATQADVALLVVDATRGEFETGFESGGQTREHALL 305 (902)
Q Consensus 234 ~rGiTid~~~~~~~~~~~~i~lIDTPG~~df~--------~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~ 305 (902)
..|+|++.....+.++++.++||||||++++. ..+..++..+|++|+|+|++.+.. .... .+..
T Consensus 234 ~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s-------~~~~-~l~~ 305 (442)
T TIGR00450 234 IKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLT-------KDDF-LIID 305 (442)
T ss_pred CCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCC-------hhHH-HHHH
Confidence 46789999888999999999999999997632 234567889999999999987632 1222 3333
Q ss_pred HHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 306 VRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 306 l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+...+. ++|+|+||+|+... .... +.+..+ .+++.+||++ .||.+
T Consensus 306 ~~~~~~-piIlV~NK~Dl~~~---~~~~-------~~~~~~-----~~~~~vSak~-~gI~~ 350 (442)
T TIGR00450 306 LNKSKK-PFILVLNKIDLKIN---SLEF-------FVSSKV-----LNSSNLSAKQ-LKIKA 350 (442)
T ss_pred HhhCCC-CEEEEEECccCCCc---chhh-------hhhhcC-----CceEEEEEec-CCHHH
Confidence 333454 47799999999642 1111 112222 2678999998 57777
No 133
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.57 E-value=4.1e-14 Score=173.45 Aligned_cols=114 Identities=21% Similarity=0.277 Sum_probs=84.8
Q ss_pred ccCCeEEeeeEEEEEECCeEEEEEeCCCccc--------hHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHH
Q psy15197 233 LNRGITMDVGQSQFETKTKYITLLDAPGHKD--------FIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHAL 304 (902)
Q Consensus 233 ~~rGiTid~~~~~~~~~~~~i~lIDTPG~~d--------f~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~ 304 (902)
...|+|++......++++..+.||||||+.. +...+..++..||++|+|+|++.+.. ....+.+.
T Consensus 305 ~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~-------~~d~~i~~ 377 (712)
T PRK09518 305 DTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLT-------STDERIVR 377 (712)
T ss_pred CCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCC-------HHHHHHHH
Confidence 3468899988888899999999999999763 56677788999999999999998743 35556667
Q ss_pred HHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 305 LVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 305 ~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.+...+.| +|+|+||+|+.... . . .. .+. .+++. .++++||++|.||.+
T Consensus 378 ~Lr~~~~p-vIlV~NK~D~~~~~-~---~-~~---~~~-~lg~~----~~~~iSA~~g~GI~e 426 (712)
T PRK09518 378 MLRRAGKP-VVLAVNKIDDQASE-Y---D-AA---EFW-KLGLG----EPYPISAMHGRGVGD 426 (712)
T ss_pred HHHhcCCC-EEEEEECcccccch-h---h-HH---HHH-HcCCC----CeEEEECCCCCCchH
Confidence 77777755 77999999986421 1 1 11 111 22332 347899999999998
No 134
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.57 E-value=2.7e-14 Score=144.85 Aligned_cols=111 Identities=25% Similarity=0.225 Sum_probs=71.1
Q ss_pred EEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh--CCCeEEEEEecCCC
Q psy15197 246 FETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL--GVNQLGVVINKLDT 323 (902)
Q Consensus 246 ~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~--~i~~iIVviNKiDl 323 (902)
+.+.+..+.|+||||+..|...+...+..+|++|+|+|+++... +. ....+...++... ...++++++||+|+
T Consensus 54 ~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~---~~--~~~~~l~~~~~~~~~~~~p~viv~NK~Dl 128 (174)
T cd04153 54 IVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRER---LP--LTKEELYKMLAHEDLRKAVLLVLANKQDL 128 (174)
T ss_pred EEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHH---HH--HHHHHHHHHHhchhhcCCCEEEEEECCCC
Confidence 44567899999999999998888889999999999999987521 00 0111122222221 12457799999998
Q ss_pred CCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 324 VSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 324 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.+.. ...++.+.+ .........++++++||++|.||++
T Consensus 129 ~~~~--~~~~i~~~l----~~~~~~~~~~~~~~~SA~~g~gi~e 166 (174)
T cd04153 129 KGAM--TPAEISESL----GLTSIRDHTWHIQGCCALTGEGLPE 166 (174)
T ss_pred CCCC--CHHHHHHHh----CcccccCCceEEEecccCCCCCHHH
Confidence 6421 112222222 1111112245789999999999998
No 135
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.57 E-value=1.2e-14 Score=165.37 Aligned_cols=150 Identities=13% Similarity=0.116 Sum_probs=90.5
Q ss_pred CCeEEeeeEEEEEECC-eEEEEEeCCCccc-------hHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHH
Q psy15197 235 RGITMDVGQSQFETKT-KYITLLDAPGHKD-------FIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLV 306 (902)
Q Consensus 235 rGiTid~~~~~~~~~~-~~i~lIDTPG~~d-------f~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l 306 (902)
.++|+......+.+.+ ..+.|+||||+.+ ....+...+..+|++|+|||++..... +...+....+..+
T Consensus 190 p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~---d~~e~~~~l~~eL 266 (390)
T PRK12298 190 PFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGS---DPVENARIIINEL 266 (390)
T ss_pred CCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCccccc---ChHHHHHHHHHHH
Confidence 4566666666777765 4699999999865 344566788999999999998721000 0111223333333
Q ss_pred HHh----CCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCccc
Q psy15197 307 RSL----GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPC 382 (902)
Q Consensus 307 ~~~----~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~ 382 (902)
... ..+++|+|+||+|+.+ ...+.+..+ .+.+..++ ..+++++||+++.|+.+
T Consensus 267 ~~~~~~L~~kP~IlVlNKiDl~~--~~el~~~l~---~l~~~~~~---~~~Vi~ISA~tg~GIde--------------- 323 (390)
T PRK12298 267 EKYSPKLAEKPRWLVFNKIDLLD--EEEAEERAK---AIVEALGW---EGPVYLISAASGLGVKE--------------- 323 (390)
T ss_pred HhhhhhhcCCCEEEEEeCCccCC--hHHHHHHHH---HHHHHhCC---CCCEEEEECCCCcCHHH---------------
Confidence 332 1244679999999874 222222222 22233222 12689999999999998
Q ss_pred HHHHHHhcCC-------CCCCCCCCceEEEeeEEe
Q psy15197 383 LLDVIDNFKT-------PSRPLTKPLRMSVSDIYK 410 (902)
Q Consensus 383 Lle~L~~l~~-------p~~~~~~pl~~~I~~i~~ 410 (902)
|++.|.+..+ +....+.+.++.+.++++
T Consensus 324 Ll~~I~~~L~~~~~~~~~~~~td~~~~~~~~EiiR 358 (390)
T PRK12298 324 LCWDLMTFIEENPREEAEEAEAPEKVEFMWDDYHR 358 (390)
T ss_pred HHHHHHHHhhhCcccCCcccccCccHHHHHHHHHH
Confidence 5555544332 223346677777777766
No 136
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.57 E-value=4e-14 Score=141.78 Aligned_cols=115 Identities=21% Similarity=0.226 Sum_probs=67.3
Q ss_pred EEeeeEEEEEECCeEEEEEeCCCccc-------hH-HHHHHHH-HHcCEEEEEEECCCCccccccCCchhhHHHHHHHHH
Q psy15197 238 TMDVGQSQFETKTKYITLLDAPGHKD-------FI-PNMITGA-TQADVALLVVDATRGEFETGFESGGQTREHALLVRS 308 (902)
Q Consensus 238 Tid~~~~~~~~~~~~i~lIDTPG~~d-------f~-~~~~~~l-~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~ 308 (902)
|.+.....+.+++..++||||||+.+ .. .....++ ..+|++|+|+|++.... ++.. .....+..++.
T Consensus 34 t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~---~~~~-~~~~~~~~l~~ 109 (168)
T cd01897 34 TKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCG---YSLE-EQLSLFEEIKP 109 (168)
T ss_pred ccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccc---cchH-HHHHHHHHHHh
Confidence 44444445556678999999999843 11 1222232 23699999999986521 1111 11233333433
Q ss_pred h-CCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 309 L-GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 309 ~-~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
. ...++|+|+||+|+.+. ....+ ...+.+. ...+++++||++|.|+.+
T Consensus 110 ~~~~~pvilv~NK~Dl~~~--~~~~~----~~~~~~~-----~~~~~~~~Sa~~~~gi~~ 158 (168)
T cd01897 110 LFKNKPVIVVLNKIDLLTF--EDLSE----IEEEEEL-----EGEEVLKISTLTEEGVDE 158 (168)
T ss_pred hcCcCCeEEEEEccccCch--hhHHH----HHHhhhh-----ccCceEEEEecccCCHHH
Confidence 3 12457899999999752 22221 1222221 124789999999999998
No 137
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.56 E-value=3.1e-14 Score=143.83 Aligned_cols=108 Identities=19% Similarity=0.201 Sum_probs=69.5
Q ss_pred ECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHH-HHHHH--hCCCeEEEEEecCCCC
Q psy15197 248 TKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHA-LLVRS--LGVNQLGVVINKLDTV 324 (902)
Q Consensus 248 ~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l-~~l~~--~~i~~iIVviNKiDl~ 324 (902)
..+..+.||||||+.++...+...++.+|++|+|+|+++... | ......+ ..+.. ....++++|.||+|+.
T Consensus 50 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s---~---~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 123 (168)
T cd04149 50 YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDR---I---DEARQELHRIINDREMRDALLLVFANKQDLP 123 (168)
T ss_pred ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhh---H---HHHHHHHHHHhcCHhhcCCcEEEEEECcCCc
Confidence 457889999999999998888888999999999999987511 1 1112222 22221 1124588999999986
Q ss_pred CchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 325 SWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 325 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+.. ..++ +...++........++++++||++|.|+.+
T Consensus 124 ~~~--~~~~----i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~ 160 (168)
T cd04149 124 DAM--KPHE----IQEKLGLTRIRDRNWYVQPSCATSGDGLYE 160 (168)
T ss_pred cCC--CHHH----HHHHcCCCccCCCcEEEEEeeCCCCCChHH
Confidence 411 1122 222222111112234789999999999988
No 138
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.56 E-value=3.3e-14 Score=140.72 Aligned_cols=101 Identities=17% Similarity=0.171 Sum_probs=66.6
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh---CCCeEEEEEecCCCCCch
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL---GVNQLGVVINKLDTVSWS 327 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~---~i~~iIVviNKiDl~~~~ 327 (902)
..+.+|||||+.+|...+...++.+|++++|+|.++... |. .....+..+... ...++++|+||+|+....
T Consensus 49 ~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s---~~---~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~ 122 (162)
T cd04138 49 CLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKS---FE---DIHTYREQIKRVKDSDDVPMVLVGNKCDLAART 122 (162)
T ss_pred EEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCCEEEEEECcccccce
Confidence 457889999999999999999999999999999986421 10 111122222221 123577999999986411
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 328 QDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 328 ~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.. .++...+.+..+ ++++++||++|.|+++
T Consensus 123 -~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 152 (162)
T cd04138 123 -VS----SRQGQDLAKSYG-----IPYIETSAKTRQGVEE 152 (162)
T ss_pred -ec----HHHHHHHHHHhC-----CeEEEecCCCCCCHHH
Confidence 11 112222233333 3789999999999998
No 139
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.56 E-value=2.5e-14 Score=143.00 Aligned_cols=109 Identities=23% Similarity=0.230 Sum_probs=70.4
Q ss_pred EECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHH-HHHHH--hCCCeEEEEEecCCC
Q psy15197 247 ETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHA-LLVRS--LGVNQLGVVINKLDT 323 (902)
Q Consensus 247 ~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l-~~l~~--~~i~~iIVviNKiDl 323 (902)
......+.||||||+.+|...+...++.+|++|+|+|+++... | .+..+.+ .++.. ...+++++++||+|+
T Consensus 40 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s---~---~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 113 (159)
T cd04150 40 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER---I---GEAREELQRMLNEDELRDAVLLVFANKQDL 113 (159)
T ss_pred EECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHH---H---HHHHHHHHHHHhcHHhcCCCEEEEEECCCC
Confidence 3467889999999999998888888999999999999986411 1 1122222 22221 122568899999998
Q ss_pred CCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 324 VSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 324 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.+... ..++.+.+ .........+.++++||++|.|+++
T Consensus 114 ~~~~~--~~~i~~~~----~~~~~~~~~~~~~~~Sak~g~gv~~ 151 (159)
T cd04150 114 PNAMS--AAEVTDKL----GLHSLRNRNWYIQATCATSGDGLYE 151 (159)
T ss_pred CCCCC--HHHHHHHh----CccccCCCCEEEEEeeCCCCCCHHH
Confidence 64211 12222222 1111112345678999999999998
No 140
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.56 E-value=1.9e-14 Score=145.19 Aligned_cols=110 Identities=18% Similarity=0.187 Sum_probs=70.8
Q ss_pred EEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHH-HHHHH--hCCCeEEEEEecCC
Q psy15197 246 FETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHA-LLVRS--LGVNQLGVVINKLD 322 (902)
Q Consensus 246 ~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l-~~l~~--~~i~~iIVviNKiD 322 (902)
++..+..+.++||||+.++...+...++.+|++|+|+|+++... + ......+ .++.. ....+++||+||+|
T Consensus 38 ~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s---~---~~~~~~~~~~~~~~~~~~~piilv~NK~D 111 (169)
T cd04158 38 VEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDR---V---SEAHSELAKLLTEKELRDALLLIFANKQD 111 (169)
T ss_pred EEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHH---H---HHHHHHHHHHhcChhhCCCCEEEEEeCcC
Confidence 45568899999999999998888889999999999999987521 1 1112222 22221 12245889999999
Q ss_pred CCCchHHHHHHHHHHHHHhhhhcCC-CCCCceEecCCCccCCCCCC
Q psy15197 323 TVSWSQDRFQEIVTKLGAFLKQAGF-RDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 323 l~~~~~~~~~~i~~~l~~~l~~~~~-~~~~~~ii~iSA~~G~gI~~ 367 (902)
+.+. ...++ +..+++.... ....+.++++||++|.||.+
T Consensus 112 l~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~ 151 (169)
T cd04158 112 VAGA--LSVEE----MTELLSLHKLCCGRSWYIQGCDARSGMGLYE 151 (169)
T ss_pred cccC--CCHHH----HHHHhCCccccCCCcEEEEeCcCCCCCCHHH
Confidence 8641 11122 2222211111 11234688999999999998
No 141
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.55 E-value=3.6e-14 Score=173.44 Aligned_cols=114 Identities=25% Similarity=0.334 Sum_probs=79.6
Q ss_pred cCCeEEeeeEEEEEECCeEEEEEeCCCccchHH--------H--HHHHH--HHcCEEEEEEECCCCccccccCCchhhHH
Q psy15197 234 NRGITMDVGQSQFETKTKYITLLDAPGHKDFIP--------N--MITGA--TQADVALLVVDATRGEFETGFESGGQTRE 301 (902)
Q Consensus 234 ~rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~--------~--~~~~l--~~aD~aIlVVDa~~g~~E~~~~~~~qt~~ 301 (902)
..|+|++.....+.++++.++++||||+.++.. + +...+ ..+|++|+|+|+++.. ....
T Consensus 33 ~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~le---------r~l~ 103 (772)
T PRK09554 33 WAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLE---------RNLY 103 (772)
T ss_pred CCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcch---------hhHH
Confidence 367899888888999999999999999987642 1 11222 2689999999998752 2233
Q ss_pred HHHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 302 HALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 302 ~l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
....+.+.++| +|+++||+|+.+.. .... .+..+.+.++. |++++||++|+|+++
T Consensus 104 l~~ql~e~giP-vIvVlNK~Dl~~~~--~i~i---d~~~L~~~LG~-----pVvpiSA~~g~GIde 158 (772)
T PRK09554 104 LTLQLLELGIP-CIVALNMLDIAEKQ--NIRI---DIDALSARLGC-----PVIPLVSTRGRGIEA 158 (772)
T ss_pred HHHHHHHcCCC-EEEEEEchhhhhcc--CcHH---HHHHHHHHhCC-----CEEEEEeecCCCHHH
Confidence 44556667866 66999999986321 1111 12222233443 899999999999998
No 142
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.54 E-value=5.7e-14 Score=140.90 Aligned_cols=102 Identities=19% Similarity=0.174 Sum_probs=68.8
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh--CCCeEEEEEecCCCCCchH
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL--GVNQLGVVINKLDTVSWSQ 328 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~--~i~~iIVviNKiDl~~~~~ 328 (902)
..+.||||||+.++...+...++.+|++|+|+|.++... |+ .....+..+... ...++++|+||+|+.+...
T Consensus 50 ~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 123 (165)
T cd01865 50 VKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEES---FN---AVQDWSTQIKTYSWDNAQVILVGNKCDMEDERV 123 (165)
T ss_pred EEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCCCEEEEEECcccCcccc
Confidence 578999999999998888889999999999999986521 11 122223333332 2345889999999964211
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 329 DRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 329 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
... ++...+.+..++ +++++||++|.|+.+
T Consensus 124 ~~~----~~~~~~~~~~~~-----~~~~~Sa~~~~gv~~ 153 (165)
T cd01865 124 VSS----ERGRQLADQLGF-----EFFEASAKENINVKQ 153 (165)
T ss_pred cCH----HHHHHHHHHcCC-----EEEEEECCCCCCHHH
Confidence 111 112222333343 789999999999998
No 143
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.54 E-value=8.9e-14 Score=135.42 Aligned_cols=120 Identities=22% Similarity=0.177 Sum_probs=74.1
Q ss_pred CeEEeeeEEEEEECC--eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCe
Q psy15197 236 GITMDVGQSQFETKT--KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQ 313 (902)
Q Consensus 236 GiTid~~~~~~~~~~--~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~ 313 (902)
++|.+.....+..++ +.+.+|||||+.++..........++.++.++|....+....-............+.. +. +
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~-p 110 (161)
T TIGR00231 33 GTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NV-P 110 (161)
T ss_pred CceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CC-c
Confidence 445555555566666 7899999999999887777777788888888887643211000000111222222221 44 4
Q ss_pred EEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 314 LGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 314 iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+++++||+|+.... ........+...+. .+++++||++|.|+.+
T Consensus 111 ~ivv~nK~D~~~~~------~~~~~~~~~~~~~~----~~~~~~sa~~~~gv~~ 154 (161)
T TIGR00231 111 IILVGNKIDLRDAK------LKTHVAFLFAKLNG----EPIIPLSAETGKNIDS 154 (161)
T ss_pred EEEEEEcccCCcch------hhHHHHHHHhhccC----CceEEeecCCCCCHHH
Confidence 77999999997522 22233333433333 3689999999999988
No 144
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.54 E-value=4.5e-14 Score=140.36 Aligned_cols=102 Identities=17% Similarity=0.088 Sum_probs=66.7
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh---CCCeEEEEEecCCCCCch
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL---GVNQLGVVINKLDTVSWS 327 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~---~i~~iIVviNKiDl~~~~ 327 (902)
..+.||||||+++|.......++.+|++|+|+|.++... |+ .....+..+... ...++|+|+||+|+.+..
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 122 (163)
T cd04136 49 CMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSS---FN---DLQDLREQILRVKDTENVPMVLVGNKCDLEDER 122 (163)
T ss_pred EEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCCEEEEEECccccccc
Confidence 467899999999998888888999999999999987521 11 122222223221 123577999999986421
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 328 QDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 328 ~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.... ++...+.+..+ .+++++||++|.|+.+
T Consensus 123 ~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~ 153 (163)
T cd04136 123 VVSR----EEGQALARQWG-----CPFYETSAKSKINVDE 153 (163)
T ss_pred eecH----HHHHHHHHHcC-----CeEEEecCCCCCCHHH
Confidence 1111 11122222222 3899999999999998
No 145
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.54 E-value=3.3e-14 Score=142.86 Aligned_cols=102 Identities=20% Similarity=0.122 Sum_probs=68.1
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh--CCCeEEEEEecCCCCCchH
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL--GVNQLGVVINKLDTVSWSQ 328 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~--~i~~iIVviNKiDl~~~~~ 328 (902)
..+.|+||||++++.......++.+|++|+|+|+++... |+ .....+..+... ...++++|.||+|+.+...
T Consensus 52 ~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~ 125 (167)
T cd01867 52 IKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKS---FE---NIRNWMRNIEEHASEDVERMLVGNKCDMEEKRV 125 (167)
T ss_pred EEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHH---HH---hHHHHHHHHHHhCCCCCcEEEEEECcccccccC
Confidence 578999999999988888888899999999999987522 11 112222222222 1235779999999974211
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 329 DRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 329 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
... ++...+.+..+ .+++++||++|.|+.+
T Consensus 126 ~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~ 155 (167)
T cd01867 126 VSK----EEGEALADEYG-----IKFLETSAKANINVEE 155 (167)
T ss_pred CCH----HHHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 111 12222333333 3889999999999998
No 146
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.54 E-value=6.3e-14 Score=139.55 Aligned_cols=103 Identities=19% Similarity=0.213 Sum_probs=67.6
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh-------CCCeEEEEEecCC
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL-------GVNQLGVVINKLD 322 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~-------~i~~iIVviNKiD 322 (902)
...++||||||+.+|.......++.+|++|+|+|.++... |+ .....+..+... ...++++|+||+|
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s---~~---~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 121 (168)
T cd04119 48 EVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQS---FE---ALDSWLKEMKQEGGPHGNMENIVVVVCANKID 121 (168)
T ss_pred EEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHH---HH---hHHHHHHHHHHhccccccCCCceEEEEEEchh
Confidence 4688999999999998888888899999999999987521 11 111222222221 2246889999999
Q ss_pred CCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 323 TVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 323 l~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+.+..... .++...+.+..+ ++++++||++|.|+.+
T Consensus 122 l~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 157 (168)
T cd04119 122 LTKHRAVS----EDEGRLWAESKG-----FKYFETSACTGEGVNE 157 (168)
T ss_pred cccccccC----HHHHHHHHHHcC-----CeEEEEECCCCCCHHH
Confidence 86311101 111122223333 3789999999999998
No 147
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.54 E-value=1e-13 Score=142.01 Aligned_cols=110 Identities=21% Similarity=0.167 Sum_probs=71.0
Q ss_pred EEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHH-HHHHH--hCCCeEEEEEecCC
Q psy15197 246 FETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHA-LLVRS--LGVNQLGVVINKLD 322 (902)
Q Consensus 246 ~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l-~~l~~--~~i~~iIVviNKiD 322 (902)
++..+..+.||||||+.+|...+...++.+|++|+|+|+++... + ......+ .++.. ....+++||+||+|
T Consensus 56 ~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s---~---~~~~~~l~~~l~~~~~~~~piilv~NK~D 129 (181)
T PLN00223 56 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR---V---VEARDELHRMLNEDELRDAVLLVFANKQD 129 (181)
T ss_pred EEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHH---H---HHHHHHHHHHhcCHhhCCCCEEEEEECCC
Confidence 45567899999999999999888899999999999999987521 1 0111112 22211 12245789999999
Q ss_pred CCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 323 TVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 323 l~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+.+.. ..+++.+ .+.........+.++++||++|+|+.+
T Consensus 130 l~~~~--~~~~~~~----~l~l~~~~~~~~~~~~~Sa~~g~gv~e 168 (181)
T PLN00223 130 LPNAM--NAAEITD----KLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
T ss_pred CCCCC--CHHHHHH----HhCccccCCCceEEEeccCCCCCCHHH
Confidence 86521 1122222 222111112334567899999999998
No 148
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.54 E-value=7.8e-14 Score=138.82 Aligned_cols=104 Identities=21% Similarity=0.212 Sum_probs=69.4
Q ss_pred CCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhC--CCeEEEEEecCCCCCc
Q psy15197 249 KTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLG--VNQLGVVINKLDTVSW 326 (902)
Q Consensus 249 ~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~--i~~iIVviNKiDl~~~ 326 (902)
.+..+.+|||||+.++.......++.+|++|+|+|+++... | ......+..+.... ..++++++||+|+.+.
T Consensus 48 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 121 (163)
T cd01860 48 TTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEES---F---EKAKSWVKELQRNASPNIIIALVGNKADLESK 121 (163)
T ss_pred EEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 34678999999999988888888899999999999986521 1 12233333333332 2347789999998732
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 327 SQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 327 ~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.....+ +...+....+ ++++++||++|.|+.+
T Consensus 122 ~~~~~~----~~~~~~~~~~-----~~~~~~Sa~~~~~v~~ 153 (163)
T cd01860 122 RQVSTE----EAQEYADENG-----LLFFETSAKTGENVNE 153 (163)
T ss_pred CcCCHH----HHHHHHHHcC-----CEEEEEECCCCCCHHH
Confidence 111111 1222233333 3789999999999998
No 149
>PRK04213 GTP-binding protein; Provisional
Probab=99.54 E-value=1e-13 Score=143.80 Aligned_cols=123 Identities=22% Similarity=0.252 Sum_probs=67.3
Q ss_pred CCeEEeeeEEEEEECCeEEEEEeCCCc-----------cchHHHHHH----HHHHcCEEEEEEECCCCcc-ccccC---C
Q psy15197 235 RGITMDVGQSQFETKTKYITLLDAPGH-----------KDFIPNMIT----GATQADVALLVVDATRGEF-ETGFE---S 295 (902)
Q Consensus 235 rGiTid~~~~~~~~~~~~i~lIDTPG~-----------~df~~~~~~----~l~~aD~aIlVVDa~~g~~-E~~~~---~ 295 (902)
+|+|++... +.+. .+++|||||+ +.+...+.. ++..+|++++|+|++.... ...+. .
T Consensus 40 ~~~t~~~~~--~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~ 115 (201)
T PRK04213 40 PGVTRKPNH--YDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGE 115 (201)
T ss_pred CceeeCceE--Eeec--ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCC
Confidence 355555433 2333 5899999995 234333323 3445789999999864210 00000 0
Q ss_pred chhhHHHHHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhc-CCCCCCceEecCCCccCCCCCC
Q psy15197 296 GGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQA-GFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 296 ~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~-~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
...+.+++..+...++| +++|+||+|+.+.......+ +...+... .+.....+++++||++| ||++
T Consensus 116 ~~~~~~l~~~~~~~~~p-~iiv~NK~Dl~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~ 182 (201)
T PRK04213 116 IPIDVEMFDFLRELGIP-PIVAVNKMDKIKNRDEVLDE----IAERLGLYPPWRQWQDIIAPISAKKG-GIEE 182 (201)
T ss_pred cHHHHHHHHHHHHcCCC-eEEEEECccccCcHHHHHHH----HHHHhcCCccccccCCcEEEEecccC-CHHH
Confidence 11334555556666766 66999999997532112222 22222110 01001136899999999 9998
No 150
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.54 E-value=2.3e-14 Score=143.53 Aligned_cols=103 Identities=17% Similarity=0.216 Sum_probs=69.2
Q ss_pred EEeCCCc----cchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHHH
Q psy15197 255 LLDAPGH----KDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDR 330 (902)
Q Consensus 255 lIDTPG~----~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~ 330 (902)
+|||||. .++...+..++..+|++|+|+|++++.. ......... ..+ +++++++||+|+.+.+.+
T Consensus 41 ~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s-------~~~~~~~~~--~~~-~~ii~v~nK~Dl~~~~~~- 109 (158)
T PRK15467 41 DIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPES-------RLPAGLLDI--GVS-KRQIAVISKTDMPDADVA- 109 (158)
T ss_pred cccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCccc-------ccCHHHHhc--cCC-CCeEEEEEccccCcccHH-
Confidence 6999997 3577777788899999999999997632 122222211 123 347799999998653222
Q ss_pred HHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCcccHHHHHHhcCC
Q psy15197 331 FQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNFKT 392 (902)
Q Consensus 331 ~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L~~l~~ 392 (902)
. +..+++..++. .|++++||++|.|+.+ |.+.|.+...
T Consensus 110 --~----~~~~~~~~~~~---~p~~~~Sa~~g~gi~~---------------l~~~l~~~~~ 147 (158)
T PRK15467 110 --A----TRKLLLETGFE---EPIFELNSHDPQSVQQ---------------LVDYLASLTK 147 (158)
T ss_pred --H----HHHHHHHcCCC---CCEEEEECCCccCHHH---------------HHHHHHHhch
Confidence 1 22333344432 4899999999999999 7777766543
No 151
>PRK11058 GTPase HflX; Provisional
Probab=99.54 E-value=5.6e-14 Score=161.69 Aligned_cols=114 Identities=19% Similarity=0.132 Sum_probs=70.1
Q ss_pred CCeEEeeeEEEEEECCe-EEEEEeCCCccch--------HHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHH
Q psy15197 235 RGITMDVGQSQFETKTK-YITLLDAPGHKDF--------IPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALL 305 (902)
Q Consensus 235 rGiTid~~~~~~~~~~~-~i~lIDTPG~~df--------~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~ 305 (902)
.|+|+|.....+.+.+. .+.|+||||+.+. +..+...+..||++|+|+|++++.+. .+......+
T Consensus 228 ~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~------e~l~~v~~i 301 (426)
T PRK11058 228 LFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQ------ENIEAVNTV 301 (426)
T ss_pred CCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHH------HHHHHHHHH
Confidence 34566666666776654 8899999998431 33456677889999999999886321 111111223
Q ss_pred HHHhC--CCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 306 VRSLG--VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 306 l~~~~--i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+...+ ..++|+|+||+|+.+..... + . . . ..+.. .++++||++|.|+++
T Consensus 302 L~el~~~~~pvIiV~NKiDL~~~~~~~---~-~-~---~-~~~~~----~~v~ISAktG~GIde 352 (426)
T PRK11058 302 LEEIDAHEIPTLLVMNKIDMLDDFEPR---I-D-R---D-EENKP----IRVWLSAQTGAGIPL 352 (426)
T ss_pred HHHhccCCCCEEEEEEcccCCCchhHH---H-H-H---H-hcCCC----ceEEEeCCCCCCHHH
Confidence 33332 23477999999997421111 1 1 0 0 11221 247899999999998
No 152
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.54 E-value=3.1e-14 Score=141.71 Aligned_cols=101 Identities=25% Similarity=0.260 Sum_probs=68.8
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh---CCCeEEEEEecCCCCCch
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL---GVNQLGVVINKLDTVSWS 327 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~---~i~~iIVviNKiDl~~~~ 327 (902)
..+.||||||+.+|...+...++.+|++|+|+|+++... | ......+..+... ++ ++++++||+|+....
T Consensus 49 ~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~-~iivv~nK~D~~~~~ 121 (161)
T cd04113 49 VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTS---F---EALPTWLSDARALASPNI-VVILVGNKSDLADQR 121 (161)
T ss_pred EEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhCCCCC-eEEEEEEchhcchhc
Confidence 578999999999999888899999999999999998632 1 1112222322222 43 577999999986411
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 328 QDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 328 ~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
... .++...+.+..+ ++++.+||++|.|+.+
T Consensus 122 ~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 152 (161)
T cd04113 122 EVT----FLEASRFAQENG-----LLFLETSALTGENVEE 152 (161)
T ss_pred cCC----HHHHHHHHHHcC-----CEEEEEECCCCCCHHH
Confidence 111 122233333333 3899999999999998
No 153
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.54 E-value=1.2e-13 Score=137.29 Aligned_cols=108 Identities=24% Similarity=0.212 Sum_probs=70.2
Q ss_pred EEEECC--eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh--CCCeEEEEEec
Q psy15197 245 QFETKT--KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL--GVNQLGVVINK 320 (902)
Q Consensus 245 ~~~~~~--~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~--~i~~iIVviNK 320 (902)
.+.+++ ..+.+|||||+.++.......++.+|++|+|+|+++... ++ .....+..+... ...++++|+||
T Consensus 41 ~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~~---~~~~~l~~~~~~~~~~~pivvv~nK 114 (164)
T smart00175 41 TIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRES---FE---NLKNWLKELREYADPNVVIMLVGNK 114 (164)
T ss_pred EEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCCeEEEEEEc
Confidence 344444 578999999999999888899999999999999987522 10 111122222221 22457899999
Q ss_pred CCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 321 LDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 321 iDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+|+........+ ....+.+..+ ++++++||++|.|+.+
T Consensus 115 ~D~~~~~~~~~~----~~~~~~~~~~-----~~~~e~Sa~~~~~i~~ 152 (164)
T smart00175 115 SDLEDQRQVSRE----EAEAFAEEHG-----LPFFETSAKTNTNVEE 152 (164)
T ss_pred hhcccccCCCHH----HHHHHHHHcC-----CeEEEEeCCCCCCHHH
Confidence 998642111111 1222233333 3789999999999998
No 154
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.54 E-value=8.2e-14 Score=138.51 Aligned_cols=102 Identities=20% Similarity=0.151 Sum_probs=68.4
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHH--hCCCeEEEEEecCCCCCch
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRS--LGVNQLGVVINKLDTVSWS 327 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~--~~i~~iIVviNKiDl~~~~ 327 (902)
...+.||||||+++|...+...++.+|++++|+|+++... |+ .....+..+.. .++| +|+|+||+|+....
T Consensus 50 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s---~~---~l~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~ 122 (162)
T cd04106 50 DVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRES---FE---AIESWKEKVEAECGDIP-MVLVQTKIDLLDQA 122 (162)
T ss_pred EEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCC-EEEEEEChhccccc
Confidence 4679999999999999888899999999999999987521 11 11111222221 2444 77999999986421
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 328 QDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 328 ~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.... ++...+.+..++ +++++||++|.|+++
T Consensus 123 ~v~~----~~~~~~~~~~~~-----~~~~~Sa~~~~~v~~ 153 (162)
T cd04106 123 VITN----EEAEALAKRLQL-----PLFRTSVKDDFNVTE 153 (162)
T ss_pred CCCH----HHHHHHHHHcCC-----eEEEEECCCCCCHHH
Confidence 1111 122233334443 899999999999988
No 155
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.54 E-value=2.3e-13 Score=134.42 Aligned_cols=106 Identities=24% Similarity=0.318 Sum_probs=70.1
Q ss_pred EEECCeEEEEEeCCCccc--------hHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEE
Q psy15197 246 FETKTKYITLLDAPGHKD--------FIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVV 317 (902)
Q Consensus 246 ~~~~~~~i~lIDTPG~~d--------f~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVv 317 (902)
+...+..+.+|||||+.+ +.......+..+|++++|+|++.... .........+...+.+ +++|
T Consensus 46 ~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~-------~~~~~~~~~~~~~~~~-~iiv 117 (168)
T cd04163 46 YTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIG-------EGDEFILELLKKSKTP-VILV 117 (168)
T ss_pred EEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccC-------chHHHHHHHHHHhCCC-EEEE
Confidence 334467899999999865 23345566788999999999987622 2344445555555555 6699
Q ss_pred EecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 318 INKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 318 iNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+||+|+... .....+....+. .... ..+++++|++++.|+++
T Consensus 118 ~nK~Dl~~~-~~~~~~~~~~~~---~~~~----~~~~~~~s~~~~~~~~~ 159 (168)
T cd04163 118 LNKIDLVKD-KEDLLPLLEKLK---ELGP----FAEIFPISALKGENVDE 159 (168)
T ss_pred EEchhcccc-HHHHHHHHHHHH---hccC----CCceEEEEeccCCChHH
Confidence 999998731 222333333322 2221 24789999999999998
No 156
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.53 E-value=6.2e-14 Score=142.55 Aligned_cols=109 Identities=23% Similarity=0.221 Sum_probs=70.5
Q ss_pred EECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHH-HH--hCCCeEEEEEecCCC
Q psy15197 247 ETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLV-RS--LGVNQLGVVINKLDT 323 (902)
Q Consensus 247 ~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l-~~--~~i~~iIVviNKiDl 323 (902)
..++..+.||||||+.++...+...++.||++|+|+|+++... + ....+.+..+ .. ....+++||+||+|+
T Consensus 53 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s---~---~~~~~~l~~~~~~~~~~~~piilv~NK~Dl 126 (175)
T smart00177 53 TYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDR---I---DEAREELHRMLNEDELRDAVILVFANKQDL 126 (175)
T ss_pred EECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHH---H---HHHHHHHHHHhhCHhhcCCcEEEEEeCcCc
Confidence 3467889999999999999888888999999999999986521 1 1222233222 21 122457899999998
Q ss_pred CCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 324 VSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 324 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.+.. ...++.+.+ .........+.++++||++|.|+.+
T Consensus 127 ~~~~--~~~~i~~~~----~~~~~~~~~~~~~~~Sa~~g~gv~e 164 (175)
T smart00177 127 PDAM--KAAEITEKL----GLHSIRDRNWYIQPTCATSGDGLYE 164 (175)
T ss_pred ccCC--CHHHHHHHh----CccccCCCcEEEEEeeCCCCCCHHH
Confidence 6421 112222222 1111112334677899999999998
No 157
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.53 E-value=5.1e-14 Score=139.67 Aligned_cols=110 Identities=23% Similarity=0.251 Sum_probs=71.9
Q ss_pred EEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHH---hCCCeEEEEEecCC
Q psy15197 246 FETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRS---LGVNQLGVVINKLD 322 (902)
Q Consensus 246 ~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~---~~i~~iIVviNKiD 322 (902)
+.+.+..+.||||||+..+.......+..+|++++|+|++.... + ......+..+.. ....++++|+||+|
T Consensus 38 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~---~---~~~~~~~~~~~~~~~~~~~piiiv~nK~D 111 (158)
T cd00878 38 VEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRER---I---EEAKEELHKLLNEEELKGVPLLIFANKQD 111 (158)
T ss_pred EEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHhCcccCCCcEEEEeeccC
Confidence 44557899999999999988888888899999999999987511 0 112222222111 12245779999999
Q ss_pred CCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 323 TVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 323 l~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+.... ...++.+.+ .........++++++||++|.|+.+
T Consensus 112 ~~~~~--~~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~gv~~ 150 (158)
T cd00878 112 LPGAL--SVSELIEKL----GLEKILGRRWHIQPCSAVTGDGLDE 150 (158)
T ss_pred Ccccc--CHHHHHHhh----ChhhccCCcEEEEEeeCCCCCCHHH
Confidence 87522 122222222 2111122346899999999999988
No 158
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.53 E-value=5.1e-14 Score=141.74 Aligned_cols=103 Identities=24% Similarity=0.231 Sum_probs=68.4
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh--CCCeEEEEEecCCCCCch
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL--GVNQLGVVINKLDTVSWS 327 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~--~i~~iIVviNKiDl~~~~ 327 (902)
...+.||||||+++|.......++.+|++|+|+|+++... |+ .....+..+... ...++|+|.||+|+.+..
T Consensus 52 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~ 125 (168)
T cd01866 52 QIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET---FN---HLTSWLEDARQHSNSNMTIMLIGNKCDLESRR 125 (168)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCCcEEEEEECccccccc
Confidence 3578999999999998888889999999999999986521 11 112222223332 123577999999986311
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 328 QDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 328 ~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.... ++...+.+..+ ++++++||++|.|+.+
T Consensus 126 ~~~~----~~~~~~~~~~~-----~~~~e~Sa~~~~~i~~ 156 (168)
T cd01866 126 EVSY----EEGEAFAKEHG-----LIFMETSAKTASNVEE 156 (168)
T ss_pred CCCH----HHHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 1111 12222333333 3789999999999998
No 159
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.52 E-value=2.7e-13 Score=139.56 Aligned_cols=103 Identities=17% Similarity=0.188 Sum_probs=67.2
Q ss_pred CeEEEEEeCCCcc----------chHHHHHHHHHH---cCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEE
Q psy15197 250 TKYITLLDAPGHK----------DFIPNMITGATQ---ADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGV 316 (902)
Q Consensus 250 ~~~i~lIDTPG~~----------df~~~~~~~l~~---aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIV 316 (902)
+..+.||||||+. ++.......+.. ++++++|+|++.+.. ....+....+...+++ +++
T Consensus 69 ~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~-------~~~~~i~~~l~~~~~~-~ii 140 (196)
T PRK00454 69 NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLK-------ELDLQMIEWLKEYGIP-VLI 140 (196)
T ss_pred CCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCC-------HHHHHHHHHHHHcCCc-EEE
Confidence 3689999999963 233334444443 468889999887632 2334445566666766 669
Q ss_pred EEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 317 VINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 317 viNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
++||+|+.+. ...+...+.+...+... ..+++++||++|.|+.+
T Consensus 141 v~nK~Dl~~~--~~~~~~~~~i~~~l~~~-----~~~~~~~Sa~~~~gi~~ 184 (196)
T PRK00454 141 VLTKADKLKK--GERKKQLKKVRKALKFG-----DDEVILFSSLKKQGIDE 184 (196)
T ss_pred EEECcccCCH--HHHHHHHHHHHHHHHhc-----CCceEEEEcCCCCCHHH
Confidence 9999998752 22333344444444432 23789999999999998
No 160
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.52 E-value=7.4e-14 Score=141.74 Aligned_cols=102 Identities=23% Similarity=0.191 Sum_probs=68.7
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh---CCCeEEEEEecCCCCCch
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL---GVNQLGVVINKLDTVSWS 327 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~---~i~~iIVviNKiDl~~~~ 327 (902)
..+.||||||+.+|...+...++.+|++|+|+|+++... |. .....+..+... ..+++++|.||+|+.+..
T Consensus 63 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~ 136 (180)
T cd04127 63 IHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQS---FL---NVRNWMSQLQTHAYCENPDIVLCGNKADLEDQR 136 (180)
T ss_pred EEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCcEEEEEeCccchhcC
Confidence 568899999999999989999999999999999987521 11 112222223222 234578999999986421
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 328 QDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 328 ~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.... ++...+.+..+ ++++++||++|.|+.+
T Consensus 137 ~v~~----~~~~~~~~~~~-----~~~~e~Sak~~~~v~~ 167 (180)
T cd04127 137 QVSE----EQAKALADKYG-----IPYFETSAATGTNVEK 167 (180)
T ss_pred ccCH----HHHHHHHHHcC-----CeEEEEeCCCCCCHHH
Confidence 1111 12223333333 3789999999999998
No 161
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.52 E-value=1.5e-13 Score=153.63 Aligned_cols=118 Identities=17% Similarity=0.153 Sum_probs=74.8
Q ss_pred CCeEEeeeEEEEEE-CCeEEEEEeCCCccc-------hHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHH
Q psy15197 235 RGITMDVGQSQFET-KTKYITLLDAPGHKD-------FIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLV 306 (902)
Q Consensus 235 rGiTid~~~~~~~~-~~~~i~lIDTPG~~d-------f~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l 306 (902)
.++|+++....+.+ ++..++|+||||+.+ +.....+.+..+|++|+|+|+++... + .+...+...+
T Consensus 189 pfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s---~---e~~~~~~~EL 262 (335)
T PRK12299 189 PFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDP---V---EDYKTIRNEL 262 (335)
T ss_pred CCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCC---H---HHHHHHHHHH
Confidence 35677777777777 457899999999854 44456667788999999999986421 0 1222222333
Q ss_pred HH----hCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 307 RS----LGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 307 ~~----~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.. +..+++|||+||+|+.+.... ..+ .+...++..+ .+++++||++++||++
T Consensus 263 ~~~~~~L~~kp~IIV~NKiDL~~~~~~-~~~---~~~~~~~~~~-----~~i~~iSAktg~GI~e 318 (335)
T PRK12299 263 EKYSPELADKPRILVLNKIDLLDEEEE-REK---RAALELAALG-----GPVFLISAVTGEGLDE 318 (335)
T ss_pred HHhhhhcccCCeEEEEECcccCCchhH-HHH---HHHHHHHhcC-----CCEEEEEcCCCCCHHH
Confidence 32 122457799999999752211 111 1112222222 3789999999999998
No 162
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.52 E-value=8e-14 Score=139.05 Aligned_cols=102 Identities=19% Similarity=0.142 Sum_probs=67.0
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh---CCCeEEEEEecCCCCCch
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL---GVNQLGVVINKLDTVSWS 327 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~---~i~~iIVviNKiDl~~~~ 327 (902)
..+.+|||||+++|.......++.+|++++|+|++.... |+ ........+... .-.++|+|+||+|+.+..
T Consensus 48 ~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~ 121 (164)
T smart00173 48 CLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQS---FE---EIKKFREQILRVKDRDDVPIVLVGNKCDLESER 121 (164)
T ss_pred EEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCCEEEEEECccccccc
Confidence 578899999999999888889999999999999987521 10 111111222211 123577999999986421
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 328 QDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 328 ~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.... +....+.+..+ ++++++||++|.|+.+
T Consensus 122 ~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 152 (164)
T smart00173 122 VVST----EEGKELARQWG-----CPFLETSAKERVNVDE 152 (164)
T ss_pred eEcH----HHHHHHHHHcC-----CEEEEeecCCCCCHHH
Confidence 1111 11222233333 4899999999999998
No 163
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.52 E-value=1.4e-13 Score=137.93 Aligned_cols=102 Identities=18% Similarity=0.189 Sum_probs=68.0
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh--CCCeEEEEEecCCCCCchH
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL--GVNQLGVVINKLDTVSWSQ 328 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~--~i~~iIVviNKiDl~~~~~ 328 (902)
..+.||||||+.+|.......++.+|++|+|+|+++... |. .....+..+... ...++|+|.||+|+.....
T Consensus 51 ~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s---~~---~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~ 124 (166)
T cd01869 51 IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQES---FN---NVKQWLQEIDRYASENVNKLLVGNKCDLTDKRV 124 (166)
T ss_pred EEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHH---HH---hHHHHHHHHHHhCCCCCcEEEEEEChhcccccC
Confidence 478999999999998888888999999999999987521 11 122223333332 1235779999999864211
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 329 DRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 329 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
... ++...+.+..+ ++++++||++|.|+.+
T Consensus 125 ~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~ 154 (166)
T cd01869 125 VDY----SEAQEFADELG-----IPFLETSAKNATNVEQ 154 (166)
T ss_pred CCH----HHHHHHHHHcC-----CeEEEEECCCCcCHHH
Confidence 111 11222233333 3899999999999998
No 164
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.52 E-value=8.4e-14 Score=140.28 Aligned_cols=109 Identities=22% Similarity=0.287 Sum_probs=69.8
Q ss_pred EEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHH-HHH---HHhCCCeEEEEEecC
Q psy15197 246 FETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHA-LLV---RSLGVNQLGVVINKL 321 (902)
Q Consensus 246 ~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l-~~l---~~~~i~~iIVviNKi 321 (902)
+...+..+.++||||+.++...+...+..+|++++|+|+++... + ......+ ..+ ...++| +++++||+
T Consensus 53 i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~---~---~~~~~~~~~~~~~~~~~~~p-~ivv~nK~ 125 (173)
T cd04155 53 VQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKR---L---EEAGAELVELLEEEKLAGVP-VLVFANKQ 125 (173)
T ss_pred EEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHH---H---HHHHHHHHHHHhChhhcCCC-EEEEEECC
Confidence 44567889999999999988888888899999999999986411 0 1111121 111 123444 77899999
Q ss_pred CCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 322 DTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 322 Dl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
|+.+.. ..+++.+.+ .........++++++||++|.|+++
T Consensus 126 D~~~~~--~~~~i~~~l----~~~~~~~~~~~~~~~Sa~~~~gi~~ 165 (173)
T cd04155 126 DLATAA--PAEEIAEAL----NLHDLRDRTWHIQACSAKTGEGLQE 165 (173)
T ss_pred CCccCC--CHHHHHHHc----CCcccCCCeEEEEEeECCCCCCHHH
Confidence 986421 122222222 1111222334688999999999998
No 165
>PRK09866 hypothetical protein; Provisional
Probab=99.52 E-value=1.2e-13 Score=160.38 Aligned_cols=109 Identities=21% Similarity=0.247 Sum_probs=76.0
Q ss_pred CeEEEEEeCCCccc-----hHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCC-CeEEEEEecCCC
Q psy15197 250 TKYITLLDAPGHKD-----FIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGV-NQLGVVINKLDT 323 (902)
Q Consensus 250 ~~~i~lIDTPG~~d-----f~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i-~~iIVviNKiDl 323 (902)
..+++|+||||... +.+.+...+..+|++|+|||++.+.. ..+..++..++..+. .++|+|+||+|+
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s-------~~DeeIlk~Lkk~~K~~PVILVVNKIDl 301 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKS-------ISDEEVREAILAVGQSVPLYVLVNKFDQ 301 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCC-------hhHHHHHHHHHhcCCCCCEEEEEEcccC
Confidence 46899999999865 45567788999999999999987632 356667777777663 257799999998
Q ss_pred CCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 324 VSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 324 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.+......+.+.+.+...+..... ....|++|||++|.|++.
T Consensus 302 ~dreeddkE~Lle~V~~~L~q~~i--~f~eIfPVSAlkG~nid~ 343 (741)
T PRK09866 302 QDRNSDDADQVRALISGTLMKGCI--TPQQIFPVSSMWGYLANR 343 (741)
T ss_pred CCcccchHHHHHHHHHHHHHhcCC--CCceEEEEeCCCCCCHHH
Confidence 742222233344444333332222 123689999999999998
No 166
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.52 E-value=1.3e-13 Score=159.81 Aligned_cols=123 Identities=19% Similarity=0.132 Sum_probs=75.3
Q ss_pred CCeEEeeeEEEEEECCeEEEEEeCCCccc-------hHHHHHHHHHHcCEEEEEEECCCCcc-ccccCCchhhH-HHHHH
Q psy15197 235 RGITMDVGQSQFETKTKYITLLDAPGHKD-------FIPNMITGATQADVALLVVDATRGEF-ETGFESGGQTR-EHALL 305 (902)
Q Consensus 235 rGiTid~~~~~~~~~~~~i~lIDTPG~~d-------f~~~~~~~l~~aD~aIlVVDa~~g~~-E~~~~~~~qt~-~~l~~ 305 (902)
.++|+++....+.+++..++|+||||+.+ .....++.+..||++|+|||++.... ...++...... ++..+
T Consensus 190 pfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y 269 (500)
T PRK12296 190 PFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAY 269 (500)
T ss_pred CcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHh
Confidence 45777888888888899999999999753 22334566788999999999974210 00000000011 11122
Q ss_pred HH---------HhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 306 VR---------SLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 306 l~---------~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.. .+.-+++|||+||+|+++. .. +.+.+...++..+ +++++|||+++.||.+
T Consensus 270 ~~~l~~~~~~~~l~~kP~IVVlNKiDL~da--~e---l~e~l~~~l~~~g-----~~Vf~ISA~tgeGLdE 330 (500)
T PRK12296 270 APALDGDLGLGDLAERPRLVVLNKIDVPDA--RE---LAEFVRPELEARG-----WPVFEVSAASREGLRE 330 (500)
T ss_pred hhcccccchhhhhcCCCEEEEEECccchhh--HH---HHHHHHHHHHHcC-----CeEEEEECCCCCCHHH
Confidence 21 2222457799999999742 11 2222223333333 3899999999999998
No 167
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.52 E-value=9.8e-14 Score=142.15 Aligned_cols=110 Identities=23% Similarity=0.215 Sum_probs=71.2
Q ss_pred EEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHH-HHHHH--hCCCeEEEEEecCC
Q psy15197 246 FETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHA-LLVRS--LGVNQLGVVINKLD 322 (902)
Q Consensus 246 ~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l-~~l~~--~~i~~iIVviNKiD 322 (902)
+...+..+.||||||+.++...+...++.+|++|+|+|+++... |+ .....+ .++.. ...+++|||+||.|
T Consensus 56 ~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s---~~---~~~~~l~~~~~~~~~~~~piilv~NK~D 129 (182)
T PTZ00133 56 VEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRER---IG---DAREELERMLSEDELRDAVLLVFANKQD 129 (182)
T ss_pred EEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHH---HH---HHHHHHHHHHhCHhhcCCCEEEEEeCCC
Confidence 34467899999999999999888999999999999999986411 11 122222 22221 12345889999999
Q ss_pred CCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 323 TVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 323 l~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+.+... ..++...+ .........+.++++||++|.|+.+
T Consensus 130 l~~~~~--~~~i~~~l----~~~~~~~~~~~~~~~Sa~tg~gv~e 168 (182)
T PTZ00133 130 LPNAMS--TTEVTEKL----GLHSVRQRNWYIQGCCATTAQGLYE 168 (182)
T ss_pred CCCCCC--HHHHHHHh----CCCcccCCcEEEEeeeCCCCCCHHH
Confidence 864211 12222222 1111222345677999999999998
No 168
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.52 E-value=1.5e-13 Score=137.78 Aligned_cols=103 Identities=22% Similarity=0.282 Sum_probs=69.1
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh--CCCeEEEEEecCCCCCch
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL--GVNQLGVVINKLDTVSWS 327 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~--~i~~iIVviNKiDl~~~~ 327 (902)
...+.||||||+.+|...+...++.+|++|+|+|.++... |+ .....+..+... ...++++|.||+|+....
T Consensus 50 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~ 123 (166)
T cd04122 50 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRST---YN---HLSSWLTDARNLTNPNTVIFLIGNKADLEAQR 123 (166)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCCeEEEEEECccccccc
Confidence 3578999999999999988899999999999999987521 11 122222222222 224578999999986421
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 328 QDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 328 ~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.... ++...+.+..+ ++++++||++|.|+.+
T Consensus 124 ~~~~----~~~~~~~~~~~-----~~~~e~Sa~~~~~i~e 154 (166)
T cd04122 124 DVTY----EEAKQFADENG-----LLFLECSAKTGENVED 154 (166)
T ss_pred CcCH----HHHHHHHHHcC-----CEEEEEECCCCCCHHH
Confidence 1111 12222333333 3899999999999998
No 169
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.52 E-value=1.9e-13 Score=134.10 Aligned_cols=108 Identities=18% Similarity=0.178 Sum_probs=70.0
Q ss_pred EECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHH----hCCCeEEEEEecCC
Q psy15197 247 ETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRS----LGVNQLGVVINKLD 322 (902)
Q Consensus 247 ~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~----~~i~~iIVviNKiD 322 (902)
..++..+.++||||+.++...+...+..+|++++|+|+++... + .+....+..+.. .+. ++++|+||+|
T Consensus 40 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~-p~iiv~nK~D 112 (159)
T cd04159 40 TKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTA---L---EAAKNELHDLLEKPSLEGI-PLLVLGNKND 112 (159)
T ss_pred EECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHH---H---HHHHHHHHHHHcChhhcCC-CEEEEEeCcc
Confidence 3456789999999999999989999999999999999986411 0 111222222211 244 4779999999
Q ss_pred CCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 323 TVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 323 l~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+.+.. ...++.+.+. +. ......++++++||++|.|+.+
T Consensus 113 ~~~~~--~~~~~~~~~~--~~--~~~~~~~~~~~~Sa~~~~gi~~ 151 (159)
T cd04159 113 LPGAL--SVDELIEQMN--LK--SITDREVSCYSISCKEKTNIDI 151 (159)
T ss_pred ccCCc--CHHHHHHHhC--cc--cccCCceEEEEEEeccCCChHH
Confidence 87521 1122222221 01 1112346889999999999998
No 170
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.52 E-value=7.3e-14 Score=138.88 Aligned_cols=102 Identities=17% Similarity=0.151 Sum_probs=67.4
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh---CCCeEEEEEecCCCCCc
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL---GVNQLGVVINKLDTVSW 326 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~---~i~~iIVviNKiDl~~~ 326 (902)
...+.||||||+.++.......++.+|++|+|+|+++... |+ .....+..+... ...++++|+||+|+...
T Consensus 48 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~ 121 (161)
T cd01863 48 KVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDT---FT---NLETWLNELETYSTNNDIVKMLVGNKIDKENR 121 (161)
T ss_pred EEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHH---HH---hHHHHHHHHHHhCCCCCCcEEEEEECCccccc
Confidence 3578999999999998888888899999999999987522 10 111122222222 12346799999998732
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 327 SQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 327 ~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
... .+ +...+.+..+ ++++++||++|.|+.+
T Consensus 122 ~~~-~~----~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 152 (161)
T cd01863 122 EVT-RE----EGLKFARKHN-----MLFIETSAKTRDGVQQ 152 (161)
T ss_pred ccC-HH----HHHHHHHHcC-----CEEEEEecCCCCCHHH
Confidence 111 11 1222233333 4899999999999998
No 171
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.51 E-value=9.3e-14 Score=138.84 Aligned_cols=102 Identities=17% Similarity=0.104 Sum_probs=67.1
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHH----hCCCeEEEEEecCCCCC
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRS----LGVNQLGVVINKLDTVS 325 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~----~~i~~iIVviNKiDl~~ 325 (902)
...+.||||||+.+|.......++.+|++|+|+|.+.... |+ .....+..+.. .++ ++|+|+||+|+.+
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~-piilv~nK~Dl~~ 120 (164)
T cd04175 48 QCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQST---FN---DLQDLREQILRVKDTEDV-PMILVGNKCDLED 120 (164)
T ss_pred EEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCC-CEEEEEECCcchh
Confidence 3467899999999999999999999999999999876521 11 11122222221 234 4789999999864
Q ss_pred chHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 326 WSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 326 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
....... +...+.+..+ ++++++||++|.|+.+
T Consensus 121 ~~~~~~~----~~~~~~~~~~-----~~~~~~Sa~~~~~v~~ 153 (164)
T cd04175 121 ERVVGKE----QGQNLARQWG-----CAFLETSAKAKINVNE 153 (164)
T ss_pred ccEEcHH----HHHHHHHHhC-----CEEEEeeCCCCCCHHH
Confidence 2111111 1122223333 3899999999999998
No 172
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.51 E-value=7.7e-14 Score=141.24 Aligned_cols=104 Identities=23% Similarity=0.148 Sum_probs=68.8
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhC---CCeEEEEEecCCCCCch
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLG---VNQLGVVINKLDTVSWS 327 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~---i~~iIVviNKiDl~~~~ 327 (902)
..+.||||||+.+|.......++.+|++|+|+|+++... | ......+..+.... .+++|+|.||+|+.+..
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~ 122 (170)
T cd04108 49 FSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVAS---L---EHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPA 122 (170)
T ss_pred EEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccc
Confidence 579999999999999888899999999999999987421 0 11222333322222 24578999999986421
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 328 QDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 328 ~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
. .....++...+.++.+ .+++.+||++|.|+++
T Consensus 123 ~--~~~~~~~~~~~~~~~~-----~~~~e~Sa~~g~~v~~ 155 (170)
T cd04108 123 Q--YALMEQDAIKLAAEMQ-----AEYWSVSALSGENVRE 155 (170)
T ss_pred c--ccccHHHHHHHHHHcC-----CeEEEEECCCCCCHHH
Confidence 1 1111122223333333 3789999999999998
No 173
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.51 E-value=1.5e-13 Score=144.62 Aligned_cols=103 Identities=21% Similarity=0.144 Sum_probs=68.6
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh-----CCCeEEEEEecCCCC
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL-----GVNQLGVVINKLDTV 324 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~-----~i~~iIVviNKiDl~ 324 (902)
...+.||||||+..+.......++.+|++|+|+|+++... |+ .....+..+... ..+++|+|.||+|+.
T Consensus 49 ~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s---~~---~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~ 122 (215)
T cd04109 49 NVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQS---FE---NLEDWYSMVRKVLKSSETQPLVVLVGNKTDLE 122 (215)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhccccCCCceEEEEEECcccc
Confidence 3689999999999988888888999999999999987521 11 122222333322 124577899999986
Q ss_pred CchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 325 SWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 325 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
..... ..++...+.+..++ +++++||++|.|+.+
T Consensus 123 ~~~~v----~~~~~~~~~~~~~~-----~~~~iSAktg~gv~~ 156 (215)
T cd04109 123 HNRTV----KDDKHARFAQANGM-----ESCLVSAKTGDRVNL 156 (215)
T ss_pred ccccc----CHHHHHHHHHHcCC-----EEEEEECCCCCCHHH
Confidence 31111 11122223333333 789999999999998
No 174
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.51 E-value=1.3e-13 Score=143.77 Aligned_cols=111 Identities=19% Similarity=0.179 Sum_probs=72.2
Q ss_pred EEEEECC--eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh--CCCeEEEEEe
Q psy15197 244 SQFETKT--KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL--GVNQLGVVIN 319 (902)
Q Consensus 244 ~~~~~~~--~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~--~i~~iIVviN 319 (902)
..+..++ ..+.||||+|+++|...+..+++.+|++|+|+|.++... |+ .....+..+... ...++|+|.|
T Consensus 40 ~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~S---f~---~l~~w~~~i~~~~~~~~piilVgN 113 (202)
T cd04120 40 KTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKET---FD---DLPKWMKMIDKYASEDAELLLVGN 113 (202)
T ss_pred EEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhCCCCCcEEEEEE
Confidence 3445554 678999999999999999999999999999999998622 21 112222333332 1245789999
Q ss_pred cCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCC
Q psy15197 320 KLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 368 (902)
Q Consensus 320 KiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~ 368 (902)
|+|+.+...... ++...+.+.. ..++++.+||++|.||.++
T Consensus 114 K~DL~~~~~v~~----~~~~~~a~~~----~~~~~~etSAktg~gV~e~ 154 (202)
T cd04120 114 KLDCETDREISR----QQGEKFAQQI----TGMRFCEASAKDNFNVDEI 154 (202)
T ss_pred CcccccccccCH----HHHHHHHHhc----CCCEEEEecCCCCCCHHHH
Confidence 999864211101 1112222222 1237899999999999983
No 175
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.51 E-value=1.7e-13 Score=140.50 Aligned_cols=112 Identities=19% Similarity=0.172 Sum_probs=71.1
Q ss_pred EEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHH-HHHH---HhCCCeEEEEEecC
Q psy15197 246 FETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHA-LLVR---SLGVNQLGVVINKL 321 (902)
Q Consensus 246 ~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l-~~l~---~~~i~~iIVviNKi 321 (902)
+..++..+.++||||+.++...+..++..+|++|+|+|+++... + ......+ .++. ..+. ++++|+||+
T Consensus 56 ~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~---~---~~~~~~l~~l~~~~~~~~~-piliv~NK~ 128 (184)
T smart00178 56 LAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKER---F---AESKRELDALLSDEELATV-PFLILGNKI 128 (184)
T ss_pred EEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHH---H---HHHHHHHHHHHcChhhcCC-CEEEEEeCc
Confidence 44567899999999999988888889999999999999986511 0 1122222 2221 1244 578999999
Q ss_pred CCCCchHHHHHHHHHHHHHhhhhcC----CCCCCceEecCCCccCCCCCC
Q psy15197 322 DTVSWSQDRFQEIVTKLGAFLKQAG----FRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 322 Dl~~~~~~~~~~i~~~l~~~l~~~~----~~~~~~~ii~iSA~~G~gI~~ 367 (902)
|+... ...+++.+.+. +..... .......++++||++|.|+.+
T Consensus 129 Dl~~~--~~~~~i~~~l~-l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~ 175 (184)
T smart00178 129 DAPYA--ASEDELRYALG-LTNTTGSKGKVGVRPLEVFMCSVVRRMGYGE 175 (184)
T ss_pred cccCC--CCHHHHHHHcC-CCcccccccccCCceeEEEEeecccCCChHH
Confidence 98641 11122322221 111000 011245689999999999998
No 176
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.51 E-value=2e-13 Score=136.93 Aligned_cols=103 Identities=20% Similarity=0.172 Sum_probs=66.8
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHH-HHHHHhC-----CCeEEEEEecCCCC
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHA-LLVRSLG-----VNQLGVVINKLDTV 324 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l-~~l~~~~-----i~~iIVviNKiDl~ 324 (902)
..+.+|||||+.++.......++.+|++|+|+|+++... + . ...... .++.... ..++++|+||+|+.
T Consensus 49 ~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~--~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 122 (172)
T cd01862 49 VTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKS---F--E-SLDSWRDEFLIQASPSDPENFPFVVLGNKIDLE 122 (172)
T ss_pred EEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHH---H--H-HHHHHHHHHHHhcCccCCCCceEEEEEECcccc
Confidence 467899999999999888899999999999999987621 0 0 111111 1122221 23577999999997
Q ss_pred CchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 325 SWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 325 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
....... +++..+.+..+. .+++++||++|.|+.+
T Consensus 123 ~~~~~~~----~~~~~~~~~~~~----~~~~~~Sa~~~~gv~~ 157 (172)
T cd01862 123 EKRQVST----KKAQQWCQSNGN----IPYFETSAKEAINVEQ 157 (172)
T ss_pred cccccCH----HHHHHHHHHcCC----ceEEEEECCCCCCHHH
Confidence 3111111 122223333332 4889999999999988
No 177
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.51 E-value=1.6e-13 Score=134.43 Aligned_cols=103 Identities=24% Similarity=0.242 Sum_probs=69.8
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhC--CCeEEEEEecCCCCCch
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLG--VNQLGVVINKLDTVSWS 327 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~--i~~iIVviNKiDl~~~~ 327 (902)
...+.++||||+..+.......++.+|++|+|+|+++... + ......+..+.... ..++++++||+|+....
T Consensus 48 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 121 (159)
T cd00154 48 TVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRES---F---ENLDKWLKELKEYAPENIPIILVGNKIDLEDQR 121 (159)
T ss_pred EEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhCCCCCcEEEEEEcccccccc
Confidence 4678999999999999999999999999999999987421 1 11222333333332 24577999999996211
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 328 QDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 328 ~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
... .+++..+....+ ++++.+||++|.|+.+
T Consensus 122 ~~~----~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~ 152 (159)
T cd00154 122 QVS----TEEAQQFAKENG-----LLFFETSAKTGENVEE 152 (159)
T ss_pred ccc----HHHHHHHHHHcC-----CeEEEEecCCCCCHHH
Confidence 111 122233333322 4899999999999988
No 178
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.51 E-value=2.8e-13 Score=135.41 Aligned_cols=102 Identities=22% Similarity=0.206 Sum_probs=67.4
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh--CCCeEEEEEecCCCCCchH
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL--GVNQLGVVINKLDTVSWSQ 328 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~--~i~~iIVviNKiDl~~~~~ 328 (902)
..+.|+||||+.++.......+..++++|+|+|+++... | ......+..+... ...++++|+||+|+.....
T Consensus 52 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~ 125 (165)
T cd01868 52 IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQT---F---ENVERWLKELRDHADSNIVIMLVGNKSDLRHLRA 125 (165)
T ss_pred EEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhCCCCCeEEEEEECcccccccc
Confidence 468899999999988888888999999999999986421 1 1112222333322 1245789999999864211
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 329 DRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 329 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
... ++...+....+ ++++++||++|.|+.+
T Consensus 126 ~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~ 155 (165)
T cd01868 126 VPT----EEAKAFAEKNG-----LSFIETSALDGTNVEE 155 (165)
T ss_pred CCH----HHHHHHHHHcC-----CEEEEEECCCCCCHHH
Confidence 111 12222222222 3789999999999998
No 179
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.51 E-value=1.2e-13 Score=141.55 Aligned_cols=108 Identities=20% Similarity=0.220 Sum_probs=67.0
Q ss_pred CCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCch-hhHHHHHHHHHhCCCeEEEEEecCCCCCc-
Q psy15197 249 KTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGG-QTREHALLVRSLGVNQLGVVINKLDTVSW- 326 (902)
Q Consensus 249 ~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~-qt~~~l~~l~~~~i~~iIVviNKiDl~~~- 326 (902)
.+..+.||||||+++|...+...++.+|++|+|+|+++... +.... ...++.......+. +++||+||+|+.+.
T Consensus 50 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~---~~~~~~~~~~i~~~~~~~~~-p~iiv~NK~D~~~~~ 125 (183)
T cd04152 50 KGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVER---MEEAKTELHKITRFSENQGV-PVLVLANKQDLPNAL 125 (183)
T ss_pred CceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHH---HHHHHHHHHHHHhhhhcCCC-cEEEEEECcCccccC
Confidence 45789999999999998888888899999999999987511 00000 00111121222344 47799999998631
Q ss_pred hHHHHHHHHHHHHHhhhhcCC-CCCCceEecCCCccCCCCCC
Q psy15197 327 SQDRFQEIVTKLGAFLKQAGF-RDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 327 ~~~~~~~i~~~l~~~l~~~~~-~~~~~~ii~iSA~~G~gI~~ 367 (902)
..+.. ...+..... ....++++++||++|.|+++
T Consensus 126 ~~~~~-------~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 160 (183)
T cd04152 126 SVSEV-------EKLLALHELSASTPWHVQPACAIIGEGLQE 160 (183)
T ss_pred CHHHH-------HHHhCccccCCCCceEEEEeecccCCCHHH
Confidence 11111 111111111 11235789999999999998
No 180
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.50 E-value=1.2e-13 Score=141.77 Aligned_cols=112 Identities=20% Similarity=0.156 Sum_probs=69.6
Q ss_pred EEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHH-HHH---HhCCCeEEEEEecC
Q psy15197 246 FETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHAL-LVR---SLGVNQLGVVINKL 321 (902)
Q Consensus 246 ~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~-~l~---~~~i~~iIVviNKi 321 (902)
+.+.+..+.++||||+.++...+...+..+|++|+|+|+++... + ......+. ++. ..+. +++|++||+
T Consensus 58 i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s---~---~~~~~~~~~i~~~~~~~~~-pvivv~NK~ 130 (190)
T cd00879 58 LTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPER---F---QESKEELDSLLSDEELANV-PFLILGNKI 130 (190)
T ss_pred EEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHH---H---HHHHHHHHHHHcCccccCC-CEEEEEeCC
Confidence 45567889999999999988888888999999999999986411 1 01122222 221 1234 477999999
Q ss_pred CCCCchHHHHHHHHHHHHHhhhhcC--------CCCCCceEecCCCccCCCCCC
Q psy15197 322 DTVSWSQDRFQEIVTKLGAFLKQAG--------FRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 322 Dl~~~~~~~~~~i~~~l~~~l~~~~--------~~~~~~~ii~iSA~~G~gI~~ 367 (902)
|+... ...+++.+.+.. .+... .....++++++||++|.|+.+
T Consensus 131 Dl~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e 181 (190)
T cd00879 131 DLPGA--VSEEELRQALGL-YGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGE 181 (190)
T ss_pred CCCCC--cCHHHHHHHhCc-ccccccccccccccCceeEEEEEeEecCCCChHH
Confidence 98641 111222222210 00000 011235789999999999998
No 181
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.50 E-value=2.3e-13 Score=136.42 Aligned_cols=102 Identities=15% Similarity=0.113 Sum_probs=67.4
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHH------hCCCeEEEEEecCCC
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRS------LGVNQLGVVINKLDT 323 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~------~~i~~iIVviNKiDl 323 (902)
...+.|+||||+++|......++..+|++|+|+|.+.... | ......+..+.. .++ ++++|.||+|+
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~~~-piilv~nK~Dl 120 (165)
T cd04140 48 ICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQS---L---EELKPIYELICEIKGNNIEKI-PIMLVGNKCDE 120 (165)
T ss_pred EEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHH---H---HHHHHHHHHHHHHhcCCCCCC-CEEEEEECccc
Confidence 4578999999999998888888899999999999987622 1 112223333333 234 47799999998
Q ss_pred CCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 324 VSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 324 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
......... +...+....+ ++++++||++|.|+.+
T Consensus 121 ~~~~~v~~~----~~~~~~~~~~-----~~~~e~SA~~g~~v~~ 155 (165)
T cd04140 121 SHKREVSSN----EGAACATEWN-----CAFMETSAKTNHNVQE 155 (165)
T ss_pred cccCeecHH----HHHHHHHHhC-----CcEEEeecCCCCCHHH
Confidence 641110111 1111222222 3789999999999998
No 182
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.50 E-value=1.5e-13 Score=138.33 Aligned_cols=101 Identities=14% Similarity=0.128 Sum_probs=66.1
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh-CCCeEEEEEecCCCCCchH
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL-GVNQLGVVINKLDTVSWSQ 328 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~-~i~~iIVviNKiDl~~~~~ 328 (902)
...+.+|||||++++.......+..+|++|+|+|.++... | ......+..+... +..++|+|+||+|+.....
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~ 121 (166)
T cd00877 48 KIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVT---Y---KNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKV 121 (166)
T ss_pred EEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhCCCCcEEEEEEchhcccccC
Confidence 4678999999999887777777889999999999987622 1 0111222222222 1345779999999863211
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 329 DRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 329 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
. .+ ...+.+.. .++++++||++|.|+++
T Consensus 122 ~--~~----~~~~~~~~-----~~~~~e~Sa~~~~~v~~ 149 (166)
T cd00877 122 K--AK----QITFHRKK-----NLQYYEISAKSNYNFEK 149 (166)
T ss_pred C--HH----HHHHHHHc-----CCEEEEEeCCCCCChHH
Confidence 1 11 11122221 24789999999999998
No 183
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.50 E-value=2e-13 Score=141.89 Aligned_cols=103 Identities=23% Similarity=0.208 Sum_probs=68.5
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHH-------hCCCeEEEEEecCC
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRS-------LGVNQLGVVINKLD 322 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~-------~~i~~iIVviNKiD 322 (902)
...+.||||||+++|...+...++.+|++|+|+|.++... |+ .....+..+.. .++ ++|+|.||+|
T Consensus 49 ~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s---~~---~~~~~~~~i~~~~~~~~~~~~-piilv~NK~D 121 (201)
T cd04107 49 VVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPST---FE---AVLKWKADLDSKVTLPNGEPI-PCLLLANKCD 121 (201)
T ss_pred EEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhcccCCCCC-cEEEEEECCC
Confidence 4578999999999998888889999999999999987521 11 11111111111 233 5779999999
Q ss_pred CCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 323 TVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 323 l~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+.+.... ..+++..+.+..++ .+++++||++|.|+.+
T Consensus 122 l~~~~~~----~~~~~~~~~~~~~~----~~~~e~Sak~~~~v~e 158 (201)
T cd04107 122 LKKRLAK----DGEQMDQFCKENGF----IGWFETSAKEGINIEE 158 (201)
T ss_pred ccccccc----CHHHHHHHHHHcCC----ceEEEEeCCCCCCHHH
Confidence 9631111 11223334444442 3789999999999998
No 184
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.49 E-value=1.5e-13 Score=138.20 Aligned_cols=109 Identities=18% Similarity=0.110 Sum_probs=69.5
Q ss_pred EEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHH-HHhCCCeEEEEEecCCCC
Q psy15197 246 FETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLV-RSLGVNQLGVVINKLDTV 324 (902)
Q Consensus 246 ~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l-~~~~i~~iIVviNKiDl~ 324 (902)
+..++..+.||||||+.+|...+...++.+|++|+|+|+++... | ...+..+..+ ......++++|+||+|+.
T Consensus 39 i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s---~---~~~~~~l~~~~~~~~~~piilv~NK~Dl~ 112 (164)
T cd04162 39 IPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSER---L---PLARQELHQLLQHPPDLPLVVLANKQDLP 112 (164)
T ss_pred EeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHH---H---HHHHHHHHHHHhCCCCCcEEEEEeCcCCc
Confidence 44567889999999999999889999999999999999987521 0 1122222222 222234577999999986
Q ss_pred CchHHHHHHHHHHH--HHhhhhcCCCCCCceEecCCCcc------CCCCCC
Q psy15197 325 SWSQDRFQEIVTKL--GAFLKQAGFRDSDIEYVPCSGLT------GENLTT 367 (902)
Q Consensus 325 ~~~~~~~~~i~~~l--~~~l~~~~~~~~~~~ii~iSA~~------G~gI~~ 367 (902)
... ...++.+.+ ..+.++ ..++++++||++ ++|+.+
T Consensus 113 ~~~--~~~~i~~~~~~~~~~~~-----~~~~~~~~Sa~~~~s~~~~~~v~~ 156 (164)
T cd04162 113 AAR--SVQEIHKELELEPIARG-----RRWILQGTSLDDDGSPSRMEAVKD 156 (164)
T ss_pred CCC--CHHHHHHHhCChhhcCC-----CceEEEEeeecCCCChhHHHHHHH
Confidence 421 122222211 111121 235778888887 888777
No 185
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.49 E-value=1.7e-13 Score=136.03 Aligned_cols=106 Identities=23% Similarity=0.292 Sum_probs=68.1
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHH-HHHHH---hCCCeEEEEEecCCCCC
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHA-LLVRS---LGVNQLGVVINKLDTVS 325 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l-~~l~~---~~i~~iIVviNKiDl~~ 325 (902)
...+.|+||||+.++...+...+..+|++|+|+|+++... + ......+ .+++. .+ .++++|+||+|+..
T Consensus 43 ~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~---~---~~~~~~~~~~~~~~~~~~-~piilv~nK~Dl~~ 115 (160)
T cd04156 43 HLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEAR---L---DESQKELKHILKNEHIKG-VPVVLLANKQDLPG 115 (160)
T ss_pred ceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHH---H---HHHHHHHHHHHhchhhcC-CCEEEEEECccccc
Confidence 4689999999999988888888999999999999987521 0 0111112 22221 24 45789999999864
Q ss_pred chHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 326 WSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 326 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.. ..+++...+. +.... ....++++++||++|.|+++
T Consensus 116 ~~--~~~~i~~~~~--~~~~~-~~~~~~~~~~Sa~~~~gv~~ 152 (160)
T cd04156 116 AL--TAEEITRRFK--LKKYC-SDRDWYVQPCSAVTGEGLAE 152 (160)
T ss_pred Cc--CHHHHHHHcC--CcccC-CCCcEEEEecccccCCChHH
Confidence 21 1122222211 01111 11235789999999999998
No 186
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.49 E-value=9.2e-14 Score=135.60 Aligned_cols=94 Identities=22% Similarity=0.223 Sum_probs=60.4
Q ss_pred EEEeCCCcc----chHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHH
Q psy15197 254 TLLDAPGHK----DFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQD 329 (902)
Q Consensus 254 ~lIDTPG~~----df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~ 329 (902)
.+|||||.. .+...+...++.+|++|+|+|++++.. .+....+ ...+. ++|+|+||+|+.+.. .
T Consensus 38 ~~iDt~G~~~~~~~~~~~~~~~~~~ad~vilv~d~~~~~s-------~~~~~~~---~~~~~-p~ilv~NK~Dl~~~~-~ 105 (142)
T TIGR02528 38 GAIDTPGEYVENRRLYSALIVTAADADVIALVQSATDPES-------RFPPGFA---SIFVK-PVIGLVTKIDLAEAD-V 105 (142)
T ss_pred eeecCchhhhhhHHHHHHHHHHhhcCCEEEEEecCCCCCc-------CCChhHH---HhccC-CeEEEEEeeccCCcc-c
Confidence 589999983 344445556889999999999988743 1222222 22233 577899999986421 1
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 330 RFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 330 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.. ++...+++..+. .+++++||++|.|+++
T Consensus 106 ~~----~~~~~~~~~~~~----~~~~~~Sa~~~~gi~~ 135 (142)
T TIGR02528 106 DI----ERAKELLETAGA----EPIFEISSVDEQGLEA 135 (142)
T ss_pred CH----HHHHHHHHHcCC----CcEEEEecCCCCCHHH
Confidence 11 122233333333 2789999999999988
No 187
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.49 E-value=3e-13 Score=140.48 Aligned_cols=102 Identities=20% Similarity=0.129 Sum_probs=68.5
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHH-hCCCeEEEEEecCCCCCchHH
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRS-LGVNQLGVVINKLDTVSWSQD 329 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~-~~i~~iIVviNKiDl~~~~~~ 329 (902)
..+.||||||+..|...+...++.+|++|+|+|+++... |+ .....+..+.. ....+++||+||+|+.+....
T Consensus 55 ~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s---~~---~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~ 128 (199)
T cd04110 55 VKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGES---FV---NVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVV 128 (199)
T ss_pred EEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCCEEEEEECccccccccc
Confidence 468899999999998888889999999999999987521 11 12222333322 223457799999998642111
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 330 RFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 330 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
. .++...+.+..+ ++++++||++|.||.+
T Consensus 129 ~----~~~~~~~~~~~~-----~~~~e~Sa~~~~gi~~ 157 (199)
T cd04110 129 E----TEDAYKFAGQMG-----ISLFETSAKENINVEE 157 (199)
T ss_pred C----HHHHHHHHHHcC-----CEEEEEECCCCcCHHH
Confidence 1 112222333333 3789999999999998
No 188
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.48 E-value=4.8e-13 Score=149.36 Aligned_cols=118 Identities=20% Similarity=0.237 Sum_probs=71.3
Q ss_pred eEEeeeEEEEEECC-eEEEEEeCCCccc-------hHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHH
Q psy15197 237 ITMDVGQSQFETKT-KYITLLDAPGHKD-------FIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRS 308 (902)
Q Consensus 237 iTid~~~~~~~~~~-~~i~lIDTPG~~d-------f~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~ 308 (902)
+|+.+....+.+.+ ..++|+||||+.+ +.....+.+..+|++|+|+|++....+. ...+.......+..
T Consensus 190 TT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~---~~e~l~~l~~EL~~ 266 (329)
T TIGR02729 190 TTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRD---PIEDYEIIRNELKK 266 (329)
T ss_pred CccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccC---HHHHHHHHHHHHHH
Confidence 34444444555655 8999999999853 3344566677899999999998531000 00112222222222
Q ss_pred ----hCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 309 ----LGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 309 ----~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+..+++|||+||+|+.+. ...+++.+++ .+..+ .+++++||++++|+++
T Consensus 267 ~~~~l~~kp~IIV~NK~DL~~~--~~~~~~~~~l---~~~~~-----~~vi~iSAktg~GI~e 319 (329)
T TIGR02729 267 YSPELAEKPRIVVLNKIDLLDE--EELAELLKEL---KKALG-----KPVFPISALTGEGLDE 319 (329)
T ss_pred hhhhhccCCEEEEEeCccCCCh--HHHHHHHHHH---HHHcC-----CcEEEEEccCCcCHHH
Confidence 222457799999999752 2223333332 22223 3789999999999998
No 189
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.48 E-value=2.1e-13 Score=141.40 Aligned_cols=102 Identities=21% Similarity=0.189 Sum_probs=65.2
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHH----hCCCeEEEEEecCCCCCc
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRS----LGVNQLGVVINKLDTVSW 326 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~----~~i~~iIVviNKiDl~~~ 326 (902)
..++||||||+.+|......++..+|++|+|+|+++... |+ .....+..+.. .++ ++|+|+||+|+...
T Consensus 47 ~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~-piilv~NK~Dl~~~ 119 (198)
T cd04147 47 LTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPES---FE---EVERLREEILEVKEDKFV-PIVVVGNKADSLEE 119 (198)
T ss_pred EEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCC-cEEEEEEccccccc
Confidence 578899999999988877888899999999999987521 11 11111122222 244 47799999998642
Q ss_pred -hHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 327 -SQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 327 -~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
......... +... ..+ ..+++.+||++|.|+.+
T Consensus 120 ~~~v~~~~~~----~~~~-~~~---~~~~~~~Sa~~g~gv~~ 153 (198)
T cd04147 120 ERQVPAKDAL----STVE-LDW---NCGFVETSAKDNENVLE 153 (198)
T ss_pred cccccHHHHH----HHHH-hhc---CCcEEEecCCCCCCHHH
Confidence 111111111 1111 111 13789999999999998
No 190
>COG2262 HflX GTPases [General function prediction only]
Probab=99.48 E-value=3.2e-13 Score=149.43 Aligned_cols=120 Identities=24% Similarity=0.264 Sum_probs=84.6
Q ss_pred EEeeeEEEEEEC-CeEEEEEeCCCccc--------hHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHH
Q psy15197 238 TMDVGQSQFETK-TKYITLLDAPGHKD--------FIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRS 308 (902)
Q Consensus 238 Tid~~~~~~~~~-~~~i~lIDTPG~~d--------f~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~ 308 (902)
|.|+....+.+. ++.+.+.||-|+.+ -.+.|......||++|.|||++++.. ..+.......+.+
T Consensus 226 TLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~------~~~~~~v~~vL~e 299 (411)
T COG2262 226 TLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEI------LEKLEAVEDVLAE 299 (411)
T ss_pred cccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhH------HHHHHHHHHHHHH
Confidence 566666667776 68999999999876 45667788889999999999998732 3455555666777
Q ss_pred hC--CCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCcccHHHH
Q psy15197 309 LG--VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDV 386 (902)
Q Consensus 309 ~~--i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~ 386 (902)
++ -+|+|+|.||+|++.... ....+. .. . . ..+++||++|.|++. |.+.
T Consensus 300 l~~~~~p~i~v~NKiD~~~~~~-----~~~~~~----~~-~---~-~~v~iSA~~~~gl~~---------------L~~~ 350 (411)
T COG2262 300 IGADEIPIILVLNKIDLLEDEE-----ILAELE----RG-S---P-NPVFISAKTGEGLDL---------------LRER 350 (411)
T ss_pred cCCCCCCEEEEEecccccCchh-----hhhhhh----hc-C---C-CeEEEEeccCcCHHH---------------HHHH
Confidence 64 246889999999875211 111111 11 1 1 468999999999998 7777
Q ss_pred HHhcCC
Q psy15197 387 IDNFKT 392 (902)
Q Consensus 387 L~~l~~ 392 (902)
|....+
T Consensus 351 i~~~l~ 356 (411)
T COG2262 351 IIELLS 356 (411)
T ss_pred HHHHhh
Confidence 765443
No 191
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.48 E-value=3.1e-13 Score=139.26 Aligned_cols=102 Identities=19% Similarity=0.171 Sum_probs=68.0
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhC--CCeEEEEEecCCCCCchH
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLG--VNQLGVVINKLDTVSWSQ 328 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~--i~~iIVviNKiDl~~~~~ 328 (902)
..+.||||||+.+|.......++.+|++|+|+|++.... | ......+..+.... ..++++|+||+|+.....
T Consensus 50 ~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s---~---~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~ 123 (191)
T cd04112 50 VKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKAS---F---DNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERV 123 (191)
T ss_pred EEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhCCCCCcEEEEEEcccchhccc
Confidence 578999999999998888888899999999999987521 1 01222333333332 235779999999863111
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 329 DRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 329 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
... ++...+.+..+ ++++++||++|.|+.+
T Consensus 124 ~~~----~~~~~l~~~~~-----~~~~e~Sa~~~~~v~~ 153 (191)
T cd04112 124 VKR----EDGERLAKEYG-----VPFMETSAKTGLNVEL 153 (191)
T ss_pred cCH----HHHHHHHHHcC-----CeEEEEeCCCCCCHHH
Confidence 111 11222233333 3899999999999998
No 192
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.48 E-value=6.4e-13 Score=132.18 Aligned_cols=116 Identities=21% Similarity=0.182 Sum_probs=89.1
Q ss_pred CCeEEeeeEEEEEECC-eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCe
Q psy15197 235 RGITMDVGQSQFETKT-KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQ 313 (902)
Q Consensus 235 rGiTid~~~~~~~~~~-~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~ 313 (902)
|-+|+.....++.+.+ +.+.|.|||||++|...+.-..+.++++|++||++.+.. ...++++..+...+..+
T Consensus 51 r~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~-------~~a~~ii~f~~~~~~ip 123 (187)
T COG2229 51 RPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPIT-------FHAEEIIDFLTSRNPIP 123 (187)
T ss_pred cceeEeecccceEEcCcceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcc-------hHHHHHHHHHhhccCCC
Confidence 4477777778888776 899999999999999999999999999999999999843 24466777777777345
Q ss_pred EEEEEecCCCCCc-hHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 314 LGVVINKLDTVSW-SQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 314 iIVviNKiDl~~~-~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
++|++||.|+.+. ..+.+.+. ++... ...|+|.++|..+++..+
T Consensus 124 ~vVa~NK~DL~~a~ppe~i~e~-------l~~~~---~~~~vi~~~a~e~~~~~~ 168 (187)
T COG2229 124 VVVAINKQDLFDALPPEKIREA-------LKLEL---LSVPVIEIDATEGEGARD 168 (187)
T ss_pred EEEEeeccccCCCCCHHHHHHH-------HHhcc---CCCceeeeecccchhHHH
Confidence 7799999999863 33333332 22221 235899999999998777
No 193
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.48 E-value=4.1e-13 Score=134.61 Aligned_cols=110 Identities=19% Similarity=0.148 Sum_probs=69.6
Q ss_pred eEEEEEECC--eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHH---hCCCeEEE
Q psy15197 242 GQSQFETKT--KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRS---LGVNQLGV 316 (902)
Q Consensus 242 ~~~~~~~~~--~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~---~~i~~iIV 316 (902)
....+.+.+ ..+.++||||+.+|...+...+..+|++|+|+|++.+.. +. .....+..++. .++ ++|+
T Consensus 45 ~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~l~~~~~~~~-~~i~ 117 (169)
T cd04114 45 MIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEES---FR---CLPEWLREIEQYANNKV-ITIL 117 (169)
T ss_pred EEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhCCCCC-eEEE
Confidence 333445555 457889999999999988999999999999999987521 10 11122222222 233 4668
Q ss_pred EEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 317 VINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 317 viNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
|+||+|+.+... ...+..+.+ .+... .+++++||++|.|+.+
T Consensus 118 v~NK~D~~~~~~-i~~~~~~~~---~~~~~-----~~~~~~Sa~~~~gv~~ 159 (169)
T cd04114 118 VGNKIDLAERRE-VSQQRAEEF---SDAQD-----MYYLETSAKESDNVEK 159 (169)
T ss_pred EEECcccccccc-cCHHHHHHH---HHHcC-----CeEEEeeCCCCCCHHH
Confidence 999999864211 111111222 11111 3789999999999998
No 194
>KOG1423|consensus
Probab=99.48 E-value=1.8e-13 Score=144.83 Aligned_cols=84 Identities=19% Similarity=0.209 Sum_probs=58.5
Q ss_pred cCCeEEeeeEEEEEECCeEEEEEeCCCccc------------hHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHH
Q psy15197 234 NRGITMDVGQSQFETKTKYITLLDAPGHKD------------FIPNMITGATQADVALLVVDATRGEFETGFESGGQTRE 301 (902)
Q Consensus 234 ~rGiTid~~~~~~~~~~~~i~lIDTPG~~d------------f~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~ 301 (902)
+-.+|+......+..+..++.|.||||... +......++..||++++|+|++..-. .....
T Consensus 103 K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~-------~l~p~ 175 (379)
T KOG1423|consen 103 KVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRT-------PLHPR 175 (379)
T ss_pred cccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcC-------ccChH
Confidence 344666777777888899999999999643 55567788899999999999985311 11222
Q ss_pred HHHHHHH-hCCCeEEEEEecCCCCC
Q psy15197 302 HALLVRS-LGVNQLGVVINKLDTVS 325 (902)
Q Consensus 302 ~l~~l~~-~~i~~iIVviNKiDl~~ 325 (902)
.+..+.. ..+|- |+|+||+|...
T Consensus 176 vl~~l~~ys~ips-~lvmnkid~~k 199 (379)
T KOG1423|consen 176 VLHMLEEYSKIPS-ILVMNKIDKLK 199 (379)
T ss_pred HHHHHHHHhcCCc-eeeccchhcch
Confidence 2333333 25564 48999999753
No 195
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.48 E-value=4.4e-13 Score=138.04 Aligned_cols=102 Identities=19% Similarity=0.215 Sum_probs=67.6
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh-----CCCeEEEEEecCCCCC
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL-----GVNQLGVVINKLDTVS 325 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~-----~i~~iIVviNKiDl~~ 325 (902)
..+.||||||+.+|.......++.+|++|+|+|.++... |+ .....+..+... ...++|+|.||+|+..
T Consensus 47 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~ 120 (190)
T cd04144 47 CMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRST---FE---RVERFREQIQRVKDESAADVPIMIVGNKCDKVY 120 (190)
T ss_pred EEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhcccCCCCCEEEEEEChhccc
Confidence 468899999999999988899999999999999987522 11 112222222221 1235778999999864
Q ss_pred chHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 326 WSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 326 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
....... +...+.+..+ ++++++||++|.|+.+
T Consensus 121 ~~~v~~~----~~~~~~~~~~-----~~~~e~SAk~~~~v~~ 153 (190)
T cd04144 121 EREVSTE----EGAALARRLG-----CEFIEASAKTNVNVER 153 (190)
T ss_pred cCccCHH----HHHHHHHHhC-----CEEEEecCCCCCCHHH
Confidence 2111111 1222233333 3789999999999998
No 196
>PTZ00369 Ras-like protein; Provisional
Probab=99.47 E-value=1.6e-13 Score=141.11 Aligned_cols=102 Identities=21% Similarity=0.144 Sum_probs=67.6
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh----CCCeEEEEEecCCCCC
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL----GVNQLGVVINKLDTVS 325 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~----~i~~iIVviNKiDl~~ 325 (902)
...+.||||||+.+|...+...++.+|++|+|+|+++... |+ .....+..+... ++ ++|+|+||+|+.+
T Consensus 52 ~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s---~~---~~~~~~~~i~~~~~~~~~-piiiv~nK~Dl~~ 124 (189)
T PTZ00369 52 TCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSS---FE---EIASFREQILRVKDKDRV-PMILVGNKCDLDS 124 (189)
T ss_pred EEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCC-CEEEEEECccccc
Confidence 3568899999999999998899999999999999987622 11 122222222221 33 4779999999864
Q ss_pred chHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 326 WSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 326 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
....... +.....+..+ ++++.+||++|.|+.+
T Consensus 125 ~~~i~~~----~~~~~~~~~~-----~~~~e~Sak~~~gi~~ 157 (189)
T PTZ00369 125 ERQVSTG----EGQELAKSFG-----IPFLETSAKQRVNVDE 157 (189)
T ss_pred ccccCHH----HHHHHHHHhC-----CEEEEeeCCCCCCHHH
Confidence 2110111 1112222333 3899999999999998
No 197
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.47 E-value=3.7e-13 Score=136.51 Aligned_cols=101 Identities=16% Similarity=0.159 Sum_probs=67.9
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHH----hCCCeEEEEEecCCCCCc
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRS----LGVNQLGVVINKLDTVSW 326 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~----~~i~~iIVviNKiDl~~~ 326 (902)
..+.||||||..+|...+..++..+|++|+|+|.++... |+ .....+..+.. .++ ++|+|.||+|+.+.
T Consensus 50 ~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~S---f~---~~~~~~~~i~~~~~~~~~-piilvgNK~Dl~~~ 122 (172)
T cd04141 50 ALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHS---FQ---EASEFKKLITRVRLTEDI-PLVLVGNKVDLESQ 122 (172)
T ss_pred EEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhH---HH---HHHHHHHHHHHhcCCCCC-CEEEEEEChhhhhc
Confidence 578899999999999888899999999999999987622 11 11222222322 234 57799999998531
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 327 SQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 327 ~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
..... ++...+.+..+ ++++++||++|.||++
T Consensus 123 ~~v~~----~~~~~~a~~~~-----~~~~e~Sa~~~~~v~~ 154 (172)
T cd04141 123 RQVTT----EEGRNLAREFN-----CPFFETSAALRHYIDD 154 (172)
T ss_pred CccCH----HHHHHHHHHhC-----CEEEEEecCCCCCHHH
Confidence 11001 11222233333 4899999999999998
No 198
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=99.47 E-value=2.6e-13 Score=123.27 Aligned_cols=89 Identities=33% Similarity=0.520 Sum_probs=84.8
Q ss_pred CCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCcEEEEEEEEEceEeeeeeccCCeEEEeeecccccccee
Q psy15197 398 TKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYVDEMSVSAAYAGDNVSVTLLNYDQQNVSV 477 (902)
Q Consensus 398 ~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~~~~~v~~a~aGdiv~I~l~~~~~~~i~k 477 (902)
++||+|+|.++|++++.|+++.|+|.+|.|+.||+|.++|.+...+|++|++++.++++|.|||.++|.+.+++..++++
T Consensus 2 ~~p~r~~V~~vf~~~g~g~vv~G~v~~G~i~~gd~v~i~P~~~~~~V~sI~~~~~~~~~a~aG~~v~i~l~~i~~~~v~~ 81 (91)
T cd03693 2 DKPLRLPIQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGVTGEVKSVEMHHEPLEEALPGDNVGFNVKNVSKKDIKR 81 (91)
T ss_pred CCCeEEEEEEEEEeCCceEEEEEEEecceeecCCEEEECCCCcEEEEEEEEECCcCcCEECCCCEEEEEECCCCHHHcCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999888899999
Q ss_pred eccccCCCC
Q psy15197 478 GFLLSELSH 486 (902)
Q Consensus 478 G~vL~~~~~ 486 (902)
|++|++++.
T Consensus 82 G~vl~~~~~ 90 (91)
T cd03693 82 GDVAGDSKN 90 (91)
T ss_pred cCEEccCCC
Confidence 999998754
No 199
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.47 E-value=4.5e-13 Score=136.30 Aligned_cols=106 Identities=18% Similarity=0.234 Sum_probs=67.9
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhH-HHHHHHHHh-CCCeEEEEEecCCCCCchH
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTR-EHALLVRSL-GVNQLGVVINKLDTVSWSQ 328 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~-~~l~~l~~~-~i~~iIVviNKiDl~~~~~ 328 (902)
+.+.||||||+++|...+...++.+|++|||+|.++... |+ ... ..+..+... ...++|+|.||+|+.+..
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s---~~---~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~- 121 (175)
T cd01874 49 YTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSS---FE---NVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP- 121 (175)
T ss_pred EEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCCEEEEEECHhhhhCh-
Confidence 578899999999998877788899999999999987521 11 111 122223222 224578999999986421
Q ss_pred HHHHHH---------HHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 329 DRFQEI---------VTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 329 ~~~~~i---------~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+..+.+ .++...+.+..+ .++++++||++|.|+.+
T Consensus 122 ~~~~~l~~~~~~~v~~~~~~~~a~~~~----~~~~~e~SA~tg~~v~~ 165 (175)
T cd01874 122 STIEKLAKNKQKPITPETGEKLARDLK----AVKYVECSALTQKGLKN 165 (175)
T ss_pred hhHHHhhhccCCCcCHHHHHHHHHHhC----CcEEEEecCCCCCCHHH
Confidence 111111 111222222332 24789999999999998
No 200
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.47 E-value=6.6e-13 Score=136.13 Aligned_cols=105 Identities=19% Similarity=0.202 Sum_probs=68.9
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh--CCCeEEEEEecCCCCCch-
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL--GVNQLGVVINKLDTVSWS- 327 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~--~i~~iIVviNKiDl~~~~- 327 (902)
..+.||||+|..+|...+...++.+|++|+|+|.++... |+ ...+.+..+... ...+ |+|.||+|+....
T Consensus 49 ~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s---~~---~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~ 121 (182)
T cd04128 49 ITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKST---LN---SIKEWYRQARGFNKTAIP-ILVGTKYDLFADLP 121 (182)
T ss_pred EEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhCCCCCE-EEEEEchhcccccc
Confidence 578999999999998888888899999999999987622 11 112223333332 2234 4789999986311
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 328 QDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 328 ~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
......+.++...+.+..+ .+++++||++|.|+++
T Consensus 122 ~~~~~~~~~~~~~~a~~~~-----~~~~e~SAk~g~~v~~ 156 (182)
T cd04128 122 PEEQEEITKQARKYAKAMK-----APLIFCSTSHSINVQK 156 (182)
T ss_pred chhhhhhHHHHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 1111122233444444443 3789999999999998
No 201
>PLN03118 Rab family protein; Provisional
Probab=99.47 E-value=3.2e-13 Score=141.46 Aligned_cols=102 Identities=25% Similarity=0.202 Sum_probs=66.9
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHH-HHHHH----hCCCeEEEEEecCCCC
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHA-LLVRS----LGVNQLGVVINKLDTV 324 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l-~~l~~----~~i~~iIVviNKiDl~ 324 (902)
.+.+.||||||+++|...+...++.+|++|+|+|+++... |. .....+ ..+.. .+. ++|+|+||+|+.
T Consensus 61 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~s---f~---~~~~~~~~~~~~~~~~~~~-~~ilv~NK~Dl~ 133 (211)
T PLN03118 61 RLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRET---FT---NLSDVWGKEVELYSTNQDC-VKMLVGNKVDRE 133 (211)
T ss_pred EEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhcCCCCC-CEEEEEECcccc
Confidence 3578999999999999988999999999999999987521 10 111111 11221 133 466899999986
Q ss_pred CchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 325 SWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 325 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
....... ++...+....+ ++++++||++|.|+++
T Consensus 134 ~~~~i~~----~~~~~~~~~~~-----~~~~e~SAk~~~~v~~ 167 (211)
T PLN03118 134 SERDVSR----EEGMALAKEHG-----CLFLECSAKTRENVEQ 167 (211)
T ss_pred ccCccCH----HHHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 4211111 11122223333 3789999999999998
No 202
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.47 E-value=7e-13 Score=133.30 Aligned_cols=101 Identities=16% Similarity=0.138 Sum_probs=66.5
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHH-HH------hCCCeEEEEEecCCC
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLV-RS------LGVNQLGVVINKLDT 323 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l-~~------~~i~~iIVviNKiDl 323 (902)
..+.||||||+.+|...+...++.+|++|+|+|.++... |+ ........+ .. .++ ++|+|+||+|+
T Consensus 54 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~~~~-piilv~nK~Dl 126 (170)
T cd04116 54 VTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQS---FQ---NLSNWKKEFIYYADVKEPESF-PFVVLGNKNDI 126 (170)
T ss_pred EEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHH---HH---hHHHHHHHHHHhcccccCCCC-cEEEEEECccc
Confidence 467889999999998888889999999999999987521 11 111111111 11 123 47799999998
Q ss_pred CCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 324 VSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 324 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.... .. .+++..+.+..+. .+++++||++|.|+.+
T Consensus 127 ~~~~-~~----~~~~~~~~~~~~~----~~~~e~Sa~~~~~v~~ 161 (170)
T cd04116 127 PERQ-VS----TEEAQAWCRENGD----YPYFETSAKDATNVAA 161 (170)
T ss_pred cccc-cC----HHHHHHHHHHCCC----CeEEEEECCCCCCHHH
Confidence 6311 01 1223333344432 3789999999999988
No 203
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.47 E-value=3.8e-13 Score=134.15 Aligned_cols=101 Identities=15% Similarity=0.106 Sum_probs=66.5
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHH----hCCCeEEEEEecCCCCCc
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRS----LGVNQLGVVINKLDTVSW 326 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~----~~i~~iIVviNKiDl~~~ 326 (902)
..+.||||||+++|...+...+..+|++|+|+|.++... | ......+..+.. .++ ++++|+||+|+...
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~-piviv~nK~Dl~~~ 121 (163)
T cd04176 49 SVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQT---F---QDIKPMRDQIVRVKGYEKV-PIILVGNKVDLESE 121 (163)
T ss_pred EEEEEEECCCcccccchHHHHHhhCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCC-CEEEEEECccchhc
Confidence 467899999999998888888999999999999987521 1 012222222322 234 47799999998641
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 327 SQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 327 ~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
..... .+...+.+..+ ++++++||++|.|+.+
T Consensus 122 ~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~ 153 (163)
T cd04176 122 REVSS----AEGRALAEEWG-----CPFMETSAKSKTMVNE 153 (163)
T ss_pred CccCH----HHHHHHHHHhC-----CEEEEecCCCCCCHHH
Confidence 11011 11122222233 3889999999999998
No 204
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.46 E-value=7.7e-13 Score=137.53 Aligned_cols=103 Identities=17% Similarity=0.190 Sum_probs=61.6
Q ss_pred eEEEEEeCCCccch--------HHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh-----CCCeEEEE
Q psy15197 251 KYITLLDAPGHKDF--------IPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL-----GVNQLGVV 317 (902)
Q Consensus 251 ~~i~lIDTPG~~df--------~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~-----~i~~iIVv 317 (902)
+.++||||||+.+| ......++..+|++|+|+|+++... |+ .....+..+... ...++|+|
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S---~~---~~~~~~~~i~~~~~~~~~~~piiiv 122 (198)
T cd04142 49 YDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDS---FH---YVKLLRQQILETRPAGNKEPPIVVV 122 (198)
T ss_pred EEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcccCCCCCCEEEE
Confidence 56889999998653 2224456789999999999987621 11 111222222221 22357799
Q ss_pred EecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 318 INKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 318 iNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.||+|+........ +++..+.++. ..++++++||++|.|+.+
T Consensus 123 gNK~Dl~~~~~~~~----~~~~~~~~~~----~~~~~~e~Sak~g~~v~~ 164 (198)
T cd04142 123 GNKRDQQRHRFAPR----HVLSVLVRKS----WKCGYLECSAKYNWHILL 164 (198)
T ss_pred EECccccccccccH----HHHHHHHHHh----cCCcEEEecCCCCCCHHH
Confidence 99999964211111 1122222211 124899999999999998
No 205
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.46 E-value=4.3e-13 Score=133.15 Aligned_cols=102 Identities=26% Similarity=0.255 Sum_probs=67.5
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHH-HHHHH---hCCCeEEEEEecCCCCC
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHA-LLVRS---LGVNQLGVVINKLDTVS 325 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l-~~l~~---~~i~~iIVviNKiDl~~ 325 (902)
...+.||||||+.++.......++.+|++++|+|.+.... |. .....+ .+... .++| +++|+||+|+.+
T Consensus 47 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-iiiv~NK~D~~~ 119 (164)
T cd04139 47 DVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMES---FT---ATAEFREQILRVKDDDNVP-LLLVGNKCDLED 119 (164)
T ss_pred EEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEEcccccc
Confidence 4578999999999999999999999999999999876411 10 111222 22222 3444 779999999864
Q ss_pred chHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 326 WSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 326 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
....... +.....+..+ ++++++||++|.|+.+
T Consensus 120 ~~~~~~~----~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 152 (164)
T cd04139 120 KRQVSSE----EAANLARQWG-----VPYVETSAKTRQNVEK 152 (164)
T ss_pred ccccCHH----HHHHHHHHhC-----CeEEEeeCCCCCCHHH
Confidence 1111111 1112222333 3889999999999998
No 206
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.46 E-value=9.2e-13 Score=132.35 Aligned_cols=107 Identities=20% Similarity=0.123 Sum_probs=68.4
Q ss_pred CCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhh--HHHHHHHHHh-CCCeEEEEEecCCCCC
Q psy15197 249 KTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQT--REHALLVRSL-GVNQLGVVINKLDTVS 325 (902)
Q Consensus 249 ~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt--~~~l~~l~~~-~i~~iIVviNKiDl~~ 325 (902)
.+..+++|||||+.++...+...+..+|++++|+|+++... -+. ...+..++.. ...++++|+||+|+.+
T Consensus 45 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s-------~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~ 117 (166)
T cd01893 45 ERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPST-------LERIRTKWLPLIRRLGVKVPIILVGNKSDLRD 117 (166)
T ss_pred CeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHH-------HHHHHHHHHHHHHHhCCCCCEEEEEEchhccc
Confidence 45689999999999888888888899999999999987522 111 1122333332 2245779999999975
Q ss_pred chHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 326 WSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 326 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
..... ...+++..+.+...- ..+++++||++|.|+++
T Consensus 118 ~~~~~--~~~~~~~~~~~~~~~---~~~~~e~Sa~~~~~v~~ 154 (166)
T cd01893 118 GSSQA--GLEEEMLPIMNEFRE---IETCVECSAKTLINVSE 154 (166)
T ss_pred ccchh--HHHHHHHHHHHHHhc---ccEEEEeccccccCHHH
Confidence 22110 111122222222210 12789999999999998
No 207
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.46 E-value=1.5e-12 Score=140.11 Aligned_cols=116 Identities=24% Similarity=0.306 Sum_probs=77.5
Q ss_pred EEeeeEEEEEECCeEEEEEeCCCccc--------hHHHHHHHHH-HcCEEEEEEECCCCccccccCCchhhHHHHHHHHH
Q psy15197 238 TMDVGQSQFETKTKYITLLDAPGHKD--------FIPNMITGAT-QADVALLVVDATRGEFETGFESGGQTREHALLVRS 308 (902)
Q Consensus 238 Tid~~~~~~~~~~~~i~lIDTPG~~d--------f~~~~~~~l~-~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~ 308 (902)
|-.+..++|+.+..++.+|||||+-| .-.+++.+++ ..+++||++|++.. +++++..|......+-..
T Consensus 202 TK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~---cgy~lE~Q~~L~~eIk~~ 278 (346)
T COG1084 202 TKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSET---CGYSLEEQISLLEEIKEL 278 (346)
T ss_pred ccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccc---cCCCHHHHHHHHHHHHHh
Confidence 44445567888899999999999876 4555777776 58899999999976 567666665443333333
Q ss_pred hCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 309 LGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 309 ~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.. +++++|+||+|+.+ .+.++++...+ ...+. ...+.+|+..+.+++.
T Consensus 279 f~-~p~v~V~nK~D~~~--~e~~~~~~~~~----~~~~~----~~~~~~~~~~~~~~d~ 326 (346)
T COG1084 279 FK-APIVVVINKIDIAD--EEKLEEIEASV----LEEGG----EEPLKISATKGCGLDK 326 (346)
T ss_pred cC-CCeEEEEecccccc--hhHHHHHHHHH----Hhhcc----ccccceeeeehhhHHH
Confidence 44 56889999999985 33444433332 22221 1245678888877776
No 208
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.46 E-value=2.9e-13 Score=136.47 Aligned_cols=112 Identities=16% Similarity=0.204 Sum_probs=70.6
Q ss_pred EEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh---CCCeEEEEEecC
Q psy15197 245 QFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL---GVNQLGVVINKL 321 (902)
Q Consensus 245 ~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~---~i~~iIVviNKi 321 (902)
.+..++..++++||||+.++...+..++..+|++|+|+|+++... + ......+..+... ...++++|+||+
T Consensus 37 ~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s---~---~~~~~~l~~l~~~~~~~~~piliv~NK~ 110 (167)
T cd04161 37 KLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDR---V---QEVKEILRELLQHPRVSGKPILVLANKQ 110 (167)
T ss_pred EEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhH---H---HHHHHHHHHHHcCccccCCcEEEEEeCC
Confidence 345578899999999999999889999999999999999987511 1 1122222222211 224578999999
Q ss_pred CCCCchHHHHHHHHHHH--HHhhhhcCCCCCCceEecCCCccC------CCCCC
Q psy15197 322 DTVSWSQDRFQEIVTKL--GAFLKQAGFRDSDIEYVPCSGLTG------ENLTT 367 (902)
Q Consensus 322 Dl~~~~~~~~~~i~~~l--~~~l~~~~~~~~~~~ii~iSA~~G------~gI~~ 367 (902)
|+.+... ..++.+.+ ..+.+.. ...++++++||++| .|+.+
T Consensus 111 Dl~~~~~--~~~i~~~~~l~~~~~~~---~~~~~~~~~Sa~~g~~~~~~~g~~~ 159 (167)
T cd04161 111 DKKNALL--GADVIEYLSLEKLVNEN---KSLCHIEPCSAIEGLGKKIDPSIVE 159 (167)
T ss_pred CCcCCCC--HHHHHHhcCcccccCCC---CceEEEEEeEceeCCCCccccCHHH
Confidence 9875221 12222211 1111111 12357889999998 66665
No 209
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.46 E-value=4.1e-13 Score=138.20 Aligned_cols=106 Identities=15% Similarity=0.122 Sum_probs=67.2
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhC-CCeEEEEEecCCCCCchHH
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLG-VNQLGVVINKLDTVSWSQD 329 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~-i~~iIVviNKiDl~~~~~~ 329 (902)
..+.||||||..++.......+..+|++|+|+|.++... | ......+..+.... ..++|+|+||+|+.+....
T Consensus 50 ~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s---~---~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~ 123 (193)
T cd04118 50 VTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSS---F---ERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRS 123 (193)
T ss_pred EEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHH---H---HHHHHHHHHHHhcCCCCCEEEEEEcccccccccc
Confidence 457799999998887777777889999999999987521 1 01122333333331 2347799999998642111
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 330 RFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 330 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
......+++..+....+ ++++++||++|.|+.+
T Consensus 124 ~~~v~~~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~ 156 (193)
T cd04118 124 LRQVDFHDVQDFADEIK-----AQHFETSSKTGQNVDE 156 (193)
T ss_pred cCccCHHHHHHHHHHcC-----CeEEEEeCCCCCCHHH
Confidence 00000122333333333 3789999999999998
No 210
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.46 E-value=1e-12 Score=135.59 Aligned_cols=102 Identities=20% Similarity=0.144 Sum_probs=70.1
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh-CCCeEEEEEecCCCCCchHH
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL-GVNQLGVVINKLDTVSWSQD 329 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~-~i~~iIVviNKiDl~~~~~~ 329 (902)
..+.||||||+.+|...+...++.+|++|||+|.++... |+ .....+..+... ...++|||.||+|+......
T Consensus 55 ~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~S---f~---~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v 128 (189)
T cd04121 55 VKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWS---FD---GIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQV 128 (189)
T ss_pred EEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhCCCCCEEEEEECccchhccCC
Confidence 678999999999999888888899999999999987622 21 122223333322 23457799999998631111
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 330 RFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 330 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
. .++...+.+..++ +++.+||++|.||++
T Consensus 129 ~----~~~~~~~a~~~~~-----~~~e~SAk~g~~V~~ 157 (189)
T cd04121 129 A----TEQAQAYAERNGM-----TFFEVSPLCNFNITE 157 (189)
T ss_pred C----HHHHHHHHHHcCC-----EEEEecCCCCCCHHH
Confidence 1 2223334444443 799999999999998
No 211
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.45 E-value=5.7e-13 Score=131.85 Aligned_cols=102 Identities=21% Similarity=0.223 Sum_probs=66.7
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh-C-CCeEEEEEecCCCCCchH
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL-G-VNQLGVVINKLDTVSWSQ 328 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~-~-i~~iIVviNKiDl~~~~~ 328 (902)
..+.+|||||+..+.......+..+|++|+|+|.+++.. + ......+..+... . ..++++|+||+|+.....
T Consensus 49 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~ 122 (162)
T cd04123 49 IDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADS---F---QKVKKWIKELKQMRGNNISLVIVGNKIDLERQRV 122 (162)
T ss_pred EEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhCCCCCeEEEEEECcccccccC
Confidence 468999999999888888888889999999999987622 1 1112222222222 1 235779999999874211
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 329 DRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 329 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
... +++..+.+..+ .+++++||++|.|+.+
T Consensus 123 ~~~----~~~~~~~~~~~-----~~~~~~s~~~~~gi~~ 152 (162)
T cd04123 123 VSK----SEAEEYAKSVG-----AKHFETSAKTGKGIEE 152 (162)
T ss_pred CCH----HHHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 111 12222233333 3789999999999998
No 212
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.45 E-value=6.5e-13 Score=140.26 Aligned_cols=101 Identities=13% Similarity=0.116 Sum_probs=66.7
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHH-hCCCeEEEEEecCCCCCchH
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRS-LGVNQLGVVINKLDTVSWSQ 328 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~-~~i~~iIVviNKiDl~~~~~ 328 (902)
...+.||||||+.+|...+...++.+|++|+|+|.++... |. .....+..+.. ....++|+|.||+|+.+...
T Consensus 61 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s---~~---~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v 134 (219)
T PLN03071 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT---YK---NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (219)
T ss_pred EEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHH---HH---HHHHHHHHHHHhCCCCcEEEEEEchhhhhccC
Confidence 4689999999999998877788899999999999997622 11 11122222222 22234779999999853111
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 329 DRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 329 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
..+ .+ .+.+.. .++++.+||++|.|+.+
T Consensus 135 -~~~----~~-~~~~~~-----~~~~~e~SAk~~~~i~~ 162 (219)
T PLN03071 135 -KAK----QV-TFHRKK-----NLQYYEISAKSNYNFEK 162 (219)
T ss_pred -CHH----HH-HHHHhc-----CCEEEEcCCCCCCCHHH
Confidence 011 11 122222 24789999999999998
No 213
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.45 E-value=3.3e-13 Score=142.46 Aligned_cols=114 Identities=21% Similarity=0.164 Sum_probs=70.1
Q ss_pred CCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh--CCCeEEEEEecCCCCCc
Q psy15197 249 KTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL--GVNQLGVVINKLDTVSW 326 (902)
Q Consensus 249 ~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~--~i~~iIVviNKiDl~~~ 326 (902)
..+.+.||||||++.|.......++.+|++|+|+|+++... |+ .....+..+... ...++|+|.||+|+.+.
T Consensus 42 ~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~S---f~---~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~ 115 (220)
T cd04126 42 GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQS---LE---ELEDRFLGLTDTANEDCLFAVVGNKLDLTEE 115 (220)
T ss_pred eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCcEEEEEECcccccc
Confidence 45679999999999998888888999999999999987521 11 111222222222 12357899999998641
Q ss_pred hH---------------HHHHHHHHHHHHhhhhcCC--------C-CCCceEecCCCccCCCCCCC
Q psy15197 327 SQ---------------DRFQEIVTKLGAFLKQAGF--------R-DSDIEYVPCSGLTGENLTTP 368 (902)
Q Consensus 327 ~~---------------~~~~~i~~~l~~~l~~~~~--------~-~~~~~ii~iSA~~G~gI~~~ 368 (902)
.. ....-..++...+.++.+. . ...++++++||++|.||.++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~el 181 (220)
T cd04126 116 GALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDEL 181 (220)
T ss_pred cccccccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHH
Confidence 00 0000011222233333220 0 11247999999999999983
No 214
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.45 E-value=5.7e-13 Score=139.88 Aligned_cols=102 Identities=25% Similarity=0.248 Sum_probs=67.9
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHH-h--CCCeEEEEEecCCCCCch
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRS-L--GVNQLGVVINKLDTVSWS 327 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~-~--~i~~iIVviNKiDl~~~~ 327 (902)
..+.||||||+++|.......++.+|++|+|+|.++... |+ .....+..+.. . ..+++|||.||+|+.+..
T Consensus 52 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~S---f~---~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~ 125 (211)
T cd04111 52 IKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRES---FE---HVHDWLEEARSHIQPHRPVFILVGHKCDLESQR 125 (211)
T ss_pred EEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCeEEEEEEcccccccc
Confidence 578999999999998888888999999999999987521 11 11222222222 1 234577899999986421
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 328 QDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 328 ~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
... .++...+.+..+ ++++.+||++|.|+.+
T Consensus 126 ~v~----~~~~~~~~~~~~-----~~~~e~Sak~g~~v~e 156 (211)
T cd04111 126 QVT----REEAEKLAKDLG-----MKYIETSARTGDNVEE 156 (211)
T ss_pred ccC----HHHHHHHHHHhC-----CEEEEEeCCCCCCHHH
Confidence 111 111222333333 3899999999999998
No 215
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.45 E-value=1.4e-12 Score=130.13 Aligned_cols=103 Identities=18% Similarity=0.166 Sum_probs=67.0
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh-CCCeEEEEEecCCCCCchH
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL-GVNQLGVVINKLDTVSWSQ 328 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~-~i~~iIVviNKiDl~~~~~ 328 (902)
...+.+|||||+..+...+...+..+|++|+|+|.++... | ......+..+... ...++|+|+||+|+.+...
T Consensus 51 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 124 (164)
T cd04101 51 TVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKAS---F---ENCSRWVNKVRTASKHMPGVLVGNKMDLADKAE 124 (164)
T ss_pred EEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhCCCCCEEEEEECcccccccC
Confidence 4689999999999988888888999999999999987521 1 0112222333322 1245779999999864211
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 329 DRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 329 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
....+ ...+....+ .+++++||++|.|+.+
T Consensus 125 ~~~~~----~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 154 (164)
T cd04101 125 VTDAQ----AQAFAQANQ-----LKFFKTSALRGVGYEE 154 (164)
T ss_pred CCHHH----HHHHHHHcC-----CeEEEEeCCCCCChHH
Confidence 01111 111112222 3789999999999998
No 216
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.44 E-value=7e-13 Score=133.36 Aligned_cols=121 Identities=21% Similarity=0.202 Sum_probs=70.3
Q ss_pred CeEEeeeEEEEEEC-CeEEEEEeCCCccc-------hHHHHHHHHHHcCEEEEEEECCCCcccccc-CCchhhHHHHHHH
Q psy15197 236 GITMDVGQSQFETK-TKYITLLDAPGHKD-------FIPNMITGATQADVALLVVDATRGEFETGF-ESGGQTREHALLV 306 (902)
Q Consensus 236 GiTid~~~~~~~~~-~~~i~lIDTPG~~d-------f~~~~~~~l~~aD~aIlVVDa~~g~~E~~~-~~~~qt~~~l~~l 306 (902)
++|++.....+.++ +..+.||||||+.+ +.......+..+|++++|+|++....+ +. +...........+
T Consensus 28 ~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~-~~~~~~~~~~~~~~~~ 106 (176)
T cd01881 28 FTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDI-GGVDPLEDYEILNAEL 106 (176)
T ss_pred ceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccc-cccCHHHHHHHHHHHH
Confidence 44555555556667 88999999999843 233456677889999999999875200 00 0000111111111
Q ss_pred HH----------hCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 307 RS----------LGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 307 ~~----------~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.. .+ .++++|+||+|+.... ...... ....... ...+++++||++|.|+.+
T Consensus 107 ~~~~~~~~~~~~~~-~p~ivv~NK~Dl~~~~--~~~~~~--~~~~~~~-----~~~~~~~~Sa~~~~gl~~ 167 (176)
T cd01881 107 KLYDLETILGLLTA-KPVIYVLNKIDLDDAE--ELEEEL--VRELALE-----EGAEVVPISAKTEEGLDE 167 (176)
T ss_pred HHhhhhhHHHHHhh-CCeEEEEEchhcCchh--HHHHHH--HHHHhcC-----CCCCEEEEehhhhcCHHH
Confidence 11 24 4577999999997521 111111 1111111 124789999999999988
No 217
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.44 E-value=1.2e-12 Score=149.88 Aligned_cols=117 Identities=21% Similarity=0.215 Sum_probs=72.1
Q ss_pred CCeEEeeeEEEEEEC-CeEEEEEeCCCccc-------hHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHH
Q psy15197 235 RGITMDVGQSQFETK-TKYITLLDAPGHKD-------FIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLV 306 (902)
Q Consensus 235 rGiTid~~~~~~~~~-~~~i~lIDTPG~~d-------f~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l 306 (902)
.++|+++....+.+. +..++|+||||+.+ +.....+.+..+|++|+|||++...... .......+...+
T Consensus 189 pfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~d---p~e~~~~i~~EL 265 (424)
T PRK12297 189 HFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRD---PIEDYEKINKEL 265 (424)
T ss_pred CcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCC---hHHHHHHHHHHH
Confidence 345666666667766 78999999999853 3344556677899999999997421000 001222222333
Q ss_pred HH----hCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 307 RS----LGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 307 ~~----~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.. +.-+++|||+||+|+... .+.+++ + .+.++ .+++++||++++|+++
T Consensus 266 ~~y~~~L~~kP~IVV~NK~DL~~~-~e~l~~----l---~~~l~-----~~i~~iSA~tgeGI~e 317 (424)
T PRK12297 266 KLYNPRLLERPQIVVANKMDLPEA-EENLEE----F---KEKLG-----PKVFPISALTGQGLDE 317 (424)
T ss_pred hhhchhccCCcEEEEEeCCCCcCC-HHHHHH----H---HHHhC-----CcEEEEeCCCCCCHHH
Confidence 32 112457799999998531 122222 2 22222 2789999999999998
No 218
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.44 E-value=4.1e-13 Score=130.72 Aligned_cols=94 Identities=30% Similarity=0.399 Sum_probs=67.2
Q ss_pred EEEeCCCc----cchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHH
Q psy15197 254 TLLDAPGH----KDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQD 329 (902)
Q Consensus 254 ~lIDTPG~----~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~ 329 (902)
.+|||||- +.|....+....+||++++|.|+++... ..--..+...+ +++|-||||+|+.. +.+
T Consensus 39 ~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~----------~~pP~fa~~f~-~pvIGVITK~Dl~~-~~~ 106 (143)
T PF10662_consen 39 NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRS----------VFPPGFASMFN-KPVIGVITKIDLPS-DDA 106 (143)
T ss_pred cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCc----------cCCchhhcccC-CCEEEEEECccCcc-chh
Confidence 45999993 4488888888889999999999997621 11123344445 45779999999983 122
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 330 RFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 330 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.+ +...+.|+..|+. .++.+|+.+|+||++
T Consensus 107 ~i----~~a~~~L~~aG~~----~if~vS~~~~eGi~e 136 (143)
T PF10662_consen 107 NI----ERAKKWLKNAGVK----EIFEVSAVTGEGIEE 136 (143)
T ss_pred hH----HHHHHHHHHcCCC----CeEEEECCCCcCHHH
Confidence 22 2344566777875 579999999999998
No 219
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.44 E-value=7.8e-13 Score=133.33 Aligned_cols=107 Identities=21% Similarity=0.228 Sum_probs=67.6
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh-CCCeEEEEEecCCCCCchHH
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL-GVNQLGVVINKLDTVSWSQD 329 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~-~i~~iIVviNKiDl~~~~~~ 329 (902)
+.+.||||||+.+|.......+..+|++|+|+|.++... |+ ......+..+... ...++|+|+||+|+.+....
T Consensus 48 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s---~~--~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~ 122 (174)
T cd04135 48 YLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPAS---FQ--NVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKT 122 (174)
T ss_pred EEEEEEeCCCcccccccccccCCCCCEEEEEEECCCHHH---HH--HHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhh
Confidence 467899999999987777777889999999999987521 10 0111122223222 22347799999998642211
Q ss_pred HHHHH---------HHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 330 RFQEI---------VTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 330 ~~~~i---------~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
...+ .++...+.+..+. .+++.+||++|.|+++
T Consensus 123 -~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~gi~~ 164 (174)
T cd04135 123 -LARLNDMKEKPVTVEQGQKLAKEIGA----HCYVECSALTQKGLKT 164 (174)
T ss_pred -HHHHhhccCCCCCHHHHHHHHHHcCC----CEEEEecCCcCCCHHH
Confidence 1100 1223333444443 3789999999999998
No 220
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.44 E-value=9.3e-13 Score=134.76 Aligned_cols=106 Identities=18% Similarity=0.158 Sum_probs=66.8
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhH-HHHHHHHH--hCCCeEEEEEecCCCCCch
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTR-EHALLVRS--LGVNQLGVVINKLDTVSWS 327 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~-~~l~~l~~--~~i~~iIVviNKiDl~~~~ 327 (902)
..+.||||||+++|.......++.+|++|+|+|+++... |+ ... ..+..+.. .++ ++|+|+||+|+....
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~-piilv~nK~Dl~~~~ 121 (187)
T cd04132 49 IELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTS---LD---NVEDKWFPEVNHFCPGT-PIMLVGLKTDLRKDK 121 (187)
T ss_pred EEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCC-CEEEEEeChhhhhCc
Confidence 468899999999998887778889999999999987521 10 111 11222221 133 477999999986421
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 328 QDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 328 ~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
........++...+.+..+. .+++++||++|.|+.+
T Consensus 122 ~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~v~~ 157 (187)
T cd04132 122 NLDRKVTPAQAESVAKKQGA----FAYLECSAKTMENVEE 157 (187)
T ss_pred cccCCcCHHHHHHHHHHcCC----cEEEEccCCCCCCHHH
Confidence 00000001122333333333 2789999999999998
No 221
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.44 E-value=1.1e-12 Score=129.43 Aligned_cols=103 Identities=20% Similarity=0.107 Sum_probs=69.2
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHH-hC--CCeEEEEEecCCCCCc
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRS-LG--VNQLGVVINKLDTVSW 326 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~-~~--i~~iIVviNKiDl~~~ 326 (902)
...+.++||||+.++.......+..+|++++|+|.++.... ......+..+.. .. ..++++|+||+|+...
T Consensus 46 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 119 (160)
T cd00876 46 TYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESF------EEIKGYREQILRVKDDEDIPIVLVGNKCDLENE 119 (160)
T ss_pred EEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHH------HHHHHHHHHHHHhcCCCCCcEEEEEECCccccc
Confidence 45789999999999888888899999999999999875210 112222222222 22 3567899999998752
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 327 SQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 327 ~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.... .+++..+.+..+ .+++++||++|.|+.+
T Consensus 120 ~~~~----~~~~~~~~~~~~-----~~~~~~S~~~~~~i~~ 151 (160)
T cd00876 120 RQVS----KEEGKALAKEWG-----CPFIETSAKDNINIDE 151 (160)
T ss_pred ceec----HHHHHHHHHHcC-----CcEEEeccCCCCCHHH
Confidence 1111 122333333333 3889999999999998
No 222
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.43 E-value=1.7e-12 Score=131.00 Aligned_cols=102 Identities=15% Similarity=0.060 Sum_probs=62.1
Q ss_pred eEEEEEeCCCccchHH-HHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh---CCCeEEEEEecCCCCCc
Q psy15197 251 KYITLLDAPGHKDFIP-NMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL---GVNQLGVVINKLDTVSW 326 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~-~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~---~i~~iIVviNKiDl~~~ 326 (902)
..+.||||||+.+|.. .....++.+|++|+|+|+++... |. .....+..+... .-.++|+|+||+|+...
T Consensus 51 ~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 124 (170)
T cd04115 51 IKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMAS---FH---SLPSWIEECEQHSLPNEVPRILVGNKCDLREQ 124 (170)
T ss_pred EEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHH---HH---hHHHHHHHHHHhcCCCCCCEEEEEECccchhh
Confidence 6789999999998864 45666788999999999987622 11 112222233322 12347799999998631
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCcc---CCCCCC
Q psy15197 327 SQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLT---GENLTT 367 (902)
Q Consensus 327 ~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~---G~gI~~ 367 (902)
... ..+ +...+.+... ++++++||++ +.|+.+
T Consensus 125 ~~~-~~~---~~~~~~~~~~-----~~~~e~Sa~~~~~~~~i~~ 159 (170)
T cd04115 125 IQV-PTD---LAQRFADAHS-----MPLFETSAKDPSENDHVEA 159 (170)
T ss_pred cCC-CHH---HHHHHHHHcC-----CcEEEEeccCCcCCCCHHH
Confidence 110 011 1112222222 4789999999 555555
No 223
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.43 E-value=1.4e-12 Score=140.21 Aligned_cols=103 Identities=17% Similarity=0.145 Sum_probs=66.3
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHH-----------hCCCeEEEEEe
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRS-----------LGVNQLGVVIN 319 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~-----------~~i~~iIVviN 319 (902)
+.+.||||+|+++|......++..+|++|+|+|.++.. +|+ .....+..+.. ....++|+|+|
T Consensus 48 ~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~---Sf~---~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgN 121 (247)
T cd04143 48 YQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRE---SFE---EVCRLREQILETKSCLKNKTKENVKIPMVICGN 121 (247)
T ss_pred EEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHH---HHH---HHHHHHHHHHHhhcccccccccCCCCcEEEEEE
Confidence 67889999999998877777788999999999998752 111 11111112211 11245789999
Q ss_pred cCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 320 KLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 320 KiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
|+|+........+ ++..++... ..++++++||++|.||++
T Consensus 122 K~Dl~~~~~v~~~----ei~~~~~~~----~~~~~~evSAktg~gI~e 161 (247)
T cd04143 122 KADRDFPREVQRD----EVEQLVGGD----ENCAYFEVSAKKNSNLDE 161 (247)
T ss_pred CccchhccccCHH----HHHHHHHhc----CCCEEEEEeCCCCCCHHH
Confidence 9998641111112 222222211 124789999999999998
No 224
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.43 E-value=2.2e-12 Score=131.11 Aligned_cols=107 Identities=25% Similarity=0.271 Sum_probs=68.1
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh-CCCeEEEEEecCCCCCchHH
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL-GVNQLGVVINKLDTVSWSQD 329 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~-~i~~iIVviNKiDl~~~~~~ 329 (902)
..+.||||||..+|...+...++.+|++|+|+|.++... |. .....++..+... .-.++|+|.||+|+.+. ..
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---f~--~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~-~~ 122 (174)
T cd01871 49 VNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPAS---FE--NVRAKWYPEVRHHCPNTPIILVGTKLDLRDD-KD 122 (174)
T ss_pred EEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHH---HH--HHHHHHHHHHHHhCCCCCEEEEeeChhhccC-hh
Confidence 578899999999998888888899999999999987521 11 0001122222222 22357799999998641 11
Q ss_pred HHHHH---------HHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 330 RFQEI---------VTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 330 ~~~~i---------~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
..+.+ .++...+.+..+. ++++++||++|.|+++
T Consensus 123 ~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~i~~ 165 (174)
T cd01871 123 TIEKLKEKKLTPITYPQGLAMAKEIGA----VKYLECSALTQKGLKT 165 (174)
T ss_pred hHHHHhhccCCCCCHHHHHHHHHHcCC----cEEEEecccccCCHHH
Confidence 11111 1122233333332 3789999999999998
No 225
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.42 E-value=1.4e-12 Score=131.17 Aligned_cols=102 Identities=21% Similarity=0.114 Sum_probs=67.2
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHH----HhCCCeEEEEEecCCCCCc
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVR----SLGVNQLGVVINKLDTVSW 326 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~----~~~i~~iIVviNKiDl~~~ 326 (902)
..+.+|||||+.+|.......+..+|++|+|+|.++... ++ ........+. ..+. ++|+++||+|+.+.
T Consensus 49 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s---~~---~~~~~~~~i~~~~~~~~~-piiiv~nK~D~~~~ 121 (168)
T cd04177 49 CDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEAS---LN---ELGELREQVLRIKDSDNV-PMVLVGNKADLEDD 121 (168)
T ss_pred EEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhCCCCC-CEEEEEEChhcccc
Confidence 578899999999999999999999999999999987521 10 1111122221 1244 47789999998642
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 327 SQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 327 ~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.....+ +...+.+..+ .++++++||++|.|+.+
T Consensus 122 ~~~~~~----~~~~~~~~~~----~~~~~~~SA~~~~~i~~ 154 (168)
T cd04177 122 RQVSRE----DGVSLSQQWG----NVPFYETSARKRTNVDE 154 (168)
T ss_pred CccCHH----HHHHHHHHcC----CceEEEeeCCCCCCHHH
Confidence 111111 1222223332 24899999999999998
No 226
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.42 E-value=1.5e-12 Score=130.42 Aligned_cols=109 Identities=17% Similarity=0.153 Sum_probs=67.8
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh-CCCeEEEEEecCCCCCchH
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL-GVNQLGVVINKLDTVSWSQ 328 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~-~i~~iIVviNKiDl~~~~~ 328 (902)
...+.||||||+.++.......++.+|++++|+|+++... ........+..+... ...++++|+||+|+.....
T Consensus 47 ~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s-----~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 121 (171)
T cd00157 47 QVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSS-----FENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDEN 121 (171)
T ss_pred EEEEEEEeCCCcccccccchhhcCCCCEEEEEEECCCHHH-----HHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchh
Confidence 4578999999999877666667788999999999987421 001112223223322 2245779999999875321
Q ss_pred HHH------HH-HHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 329 DRF------QE-IVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 329 ~~~------~~-i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
... .. ..++...+....+. .+++.+||++|.|+.+
T Consensus 122 ~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~~~gi~~ 163 (171)
T cd00157 122 TLKKLEKGKEPITPEEGEKLAKEIGA----IGYMECSALTQEGVKE 163 (171)
T ss_pred hhhhcccCCCccCHHHHHHHHHHhCC----eEEEEeecCCCCCHHH
Confidence 100 00 01222333333332 3899999999999998
No 227
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.42 E-value=3.2e-12 Score=124.50 Aligned_cols=116 Identities=23% Similarity=0.234 Sum_probs=72.5
Q ss_pred EEeeeEEEEEEC-CeEEEEEeCCCccchH-------HHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh
Q psy15197 238 TMDVGQSQFETK-TKYITLLDAPGHKDFI-------PNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL 309 (902)
Q Consensus 238 Tid~~~~~~~~~-~~~i~lIDTPG~~df~-------~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~ 309 (902)
|.+.....+... ...+.||||||+.++. ..+...+..+|++++|+|+..... .............
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~-------~~~~~~~~~~~~~ 103 (163)
T cd00880 31 TTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRAD-------EEEEKLLELLRER 103 (163)
T ss_pred EECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCC-------HHHHHHHHHHHhc
Confidence 333333334443 6789999999987743 455567889999999999998732 2222223444445
Q ss_pred CCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 310 GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 310 ~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+.+ +++|+||+|+.... ......+.. ... .......+++++||+++.|+.+
T Consensus 104 ~~~-~ivv~nK~D~~~~~--~~~~~~~~~-~~~---~~~~~~~~~~~~sa~~~~~v~~ 154 (163)
T cd00880 104 GKP-VLLVLNKIDLLPEE--EEEELLELR-LLI---LLLLLGLPVIAVSALTGEGIDE 154 (163)
T ss_pred CCe-EEEEEEccccCChh--hHHHHHHHH-Hhh---cccccCCceEEEeeeccCCHHH
Confidence 544 77999999997522 112111100 001 1112345899999999999988
No 228
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.42 E-value=1.3e-12 Score=132.17 Aligned_cols=103 Identities=21% Similarity=0.127 Sum_probs=65.0
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHHH
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDR 330 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~ 330 (902)
..+.++||+|...+.......+..+|++|+|+|+++... |+ ...+.+..+......++++|+||+|+.+....
T Consensus 54 ~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s---~~---~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~- 126 (169)
T cd01892 54 KYLILREVGEDEVAILLNDAELAACDVACLVYDSSDPKS---FS---YCAEVYKKYFMLGEIPCLFVAAKADLDEQQQR- 126 (169)
T ss_pred EEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHHH---HH---HHHHHHHHhccCCCCeEEEEEEcccccccccc-
Confidence 568899999999988777788899999999999987511 00 11122222211222457899999998642110
Q ss_pred HHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 331 FQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 331 ~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
...+...+.+..++. +++++||++|.|+.+
T Consensus 127 ---~~~~~~~~~~~~~~~----~~~~~Sa~~~~~v~~ 156 (169)
T cd01892 127 ---YEVQPDEFCRKLGLP----PPLHFSSKLGDSSNE 156 (169)
T ss_pred ---cccCHHHHHHHcCCC----CCEEEEeccCccHHH
Confidence 001112222333332 358899999999998
No 229
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.41 E-value=1.7e-12 Score=129.90 Aligned_cols=102 Identities=18% Similarity=0.149 Sum_probs=66.7
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh--CCCeEEEEEecCCCCCchH
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL--GVNQLGVVINKLDTVSWSQ 328 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~--~i~~iIVviNKiDl~~~~~ 328 (902)
..+.||||||..+|...+...+..+|++++|+|.++... |+ .....+..+... ...++++|.||+|+.....
T Consensus 49 ~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---f~---~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~ 122 (161)
T cd04117 49 VRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERS---YQ---HIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQ 122 (161)
T ss_pred EEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCCeEEEEEECcccccccC
Confidence 568899999999998888888999999999999987521 21 111222222222 1245779999999864211
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 329 DRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 329 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.. . ++...+.+..+ .+++++||++|.|+.+
T Consensus 123 v~-~---~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~ 152 (161)
T cd04117 123 VG-D---EQGNKLAKEYG-----MDFFETSACTNSNIKE 152 (161)
T ss_pred CC-H---HHHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 00 1 11222223333 3789999999999998
No 230
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.41 E-value=9.4e-13 Score=135.11 Aligned_cols=103 Identities=20% Similarity=0.106 Sum_probs=67.4
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh--CCCeEEEEEecCCCCCch
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL--GVNQLGVVINKLDTVSWS 327 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~--~i~~iIVviNKiDl~~~~ 327 (902)
...+.||||||..+|...+...++.+|++|+|+|+++... |+ .....+..+... ...++|+++||+|+.+..
T Consensus 48 ~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s---~~---~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~ 121 (188)
T cd04125 48 IIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQES---FE---NLKFWINEINRYARENVIKVIVANKSDLVNNK 121 (188)
T ss_pred EEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhCCCCCeEEEEEECCCCcccc
Confidence 3578899999999998888889999999999999987521 11 111222223222 124578999999987421
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 328 QDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 328 ~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.... +....+.+..+ ++++.+||++|.|+.+
T Consensus 122 ~v~~----~~~~~~~~~~~-----~~~~evSa~~~~~i~~ 152 (188)
T cd04125 122 VVDS----NIAKSFCDSLN-----IPFFETSAKQSINVEE 152 (188)
T ss_pred cCCH----HHHHHHHHHcC-----CeEEEEeCCCCCCHHH
Confidence 1000 11112222233 3789999999999998
No 231
>PLN03108 Rab family protein; Provisional
Probab=99.41 E-value=1.4e-12 Score=136.82 Aligned_cols=102 Identities=23% Similarity=0.208 Sum_probs=67.7
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh--CCCeEEEEEecCCCCCchH
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL--GVNQLGVVINKLDTVSWSQ 328 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~--~i~~iIVviNKiDl~~~~~ 328 (902)
..+.+|||||+.++...+...++.+|++|+|+|++.... |+ .....+..+... ...++|++.||+|+.....
T Consensus 55 i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s---~~---~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~ 128 (210)
T PLN03108 55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET---FN---HLASWLEDARQHANANMTIMLIGNKCDLAHRRA 128 (210)
T ss_pred EEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHH---HH---HHHHHHHHHHHhcCCCCcEEEEEECccCccccC
Confidence 468899999999998888888999999999999987521 10 111222222222 2245779999999864211
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 329 DRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 329 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.. .++...+.+..+ ++++++||++|.|+.+
T Consensus 129 ~~----~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~e 158 (210)
T PLN03108 129 VS----TEEGEQFAKEHG-----LIFMEASAKTAQNVEE 158 (210)
T ss_pred CC----HHHHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 11 112223333333 3899999999999998
No 232
>PLN03110 Rab GTPase; Provisional
Probab=99.41 E-value=1.6e-12 Score=136.89 Aligned_cols=101 Identities=20% Similarity=0.198 Sum_probs=67.3
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh---CCCeEEEEEecCCCCCch
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL---GVNQLGVVINKLDTVSWS 327 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~---~i~~iIVviNKiDl~~~~ 327 (902)
..+.||||||+.+|.......++.+|++|+|+|.++... | ......+..+... ++ ++|+|.||+|+....
T Consensus 61 ~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s---~---~~~~~~~~~~~~~~~~~~-piiiv~nK~Dl~~~~ 133 (216)
T PLN03110 61 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQT---F---DNVQRWLRELRDHADSNI-VIMMAGNKSDLNHLR 133 (216)
T ss_pred EEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHH---H---HHHHHHHHHHHHhCCCCC-eEEEEEEChhccccc
Confidence 578999999999999888888999999999999987521 1 1112223333332 33 577999999985311
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 328 QDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 328 ~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
... .+... .+....+ ++++++||++|.|+.+
T Consensus 134 ~~~-~~~~~---~l~~~~~-----~~~~e~SA~~g~~v~~ 164 (216)
T PLN03110 134 SVA-EEDGQ---ALAEKEG-----LSFLETSALEATNVEK 164 (216)
T ss_pred CCC-HHHHH---HHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 100 11111 1122222 4899999999999998
No 233
>KOG0092|consensus
Probab=99.41 E-value=8.3e-13 Score=131.98 Aligned_cols=103 Identities=21% Similarity=0.268 Sum_probs=74.5
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEE--EEecCCCCCch
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGV--VINKLDTVSWS 327 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIV--viNKiDl~~~~ 327 (902)
..++.||||+|+++|....-.+++.|+++|+|.|.++.. +|. ..+..+..+....-|.+++ |.||+||.+..
T Consensus 53 ~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~---SF~---~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R 126 (200)
T KOG0092|consen 53 TIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEE---SFE---KAKNWVKELQRQASPNIVIALVGNKADLLERR 126 (200)
T ss_pred EEEEEEEEcCCcccccccccceecCCcEEEEEEecccHH---HHH---HHHHHHHHHHhhCCCCeEEEEecchhhhhhcc
Confidence 367889999999999999999999999999999999762 221 3344445555544354544 78999997521
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 328 QDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 328 ~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.. -.++...+.+..++ .++.+||++|.|+++
T Consensus 127 ~V----~~~ea~~yAe~~gl-----l~~ETSAKTg~Nv~~ 157 (200)
T KOG0092|consen 127 EV----EFEEAQAYAESQGL-----LFFETSAKTGENVNE 157 (200)
T ss_pred cc----cHHHHHHHHHhcCC-----EEEEEecccccCHHH
Confidence 11 22344455555555 899999999999998
No 234
>KOG0094|consensus
Probab=99.40 E-value=2.7e-12 Score=128.23 Aligned_cols=111 Identities=25% Similarity=0.246 Sum_probs=75.8
Q ss_pred eEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHH-HhCC--CeEEEEE
Q psy15197 242 GQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVR-SLGV--NQLGVVI 318 (902)
Q Consensus 242 ~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~-~~~i--~~iIVvi 318 (902)
...+++-..+.+.+|||+|+++|....-++++.+.++|+|.|.++- .+|+ ++...+.-+. +.+- ..+++|.
T Consensus 62 kt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~---~Sfe---~t~kWi~dv~~e~gs~~viI~LVG 135 (221)
T KOG0094|consen 62 KTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDR---NSFE---NTSKWIEDVRRERGSDDVIIFLVG 135 (221)
T ss_pred EEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEecccc---chHH---HHHHHHHHHHhccCCCceEEEEEc
Confidence 3334444457899999999999999999999999999999999875 2222 4444444333 4443 2345578
Q ss_pred ecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 319 NKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 319 NKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
||.||++..+-.. ++-....++++. .++.+||+.|.||.+
T Consensus 136 nKtDL~dkrqvs~----eEg~~kAkel~a-----~f~etsak~g~NVk~ 175 (221)
T KOG0094|consen 136 NKTDLSDKRQVSI----EEGERKAKELNA-----EFIETSAKAGENVKQ 175 (221)
T ss_pred ccccccchhhhhH----HHHHHHHHHhCc-----EEEEecccCCCCHHH
Confidence 9999986321111 122233444443 789999999999998
No 235
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=99.40 E-value=1.5e-12 Score=116.26 Aligned_cols=83 Identities=39% Similarity=0.699 Sum_probs=79.4
Q ss_pred CceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCcEEEEEEEEEceEeeeeeccCCeEEEeeeccccccceeec
Q psy15197 400 PLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYVDEMSVSAAYAGDNVSVTLLNYDQQNVSVGF 479 (902)
Q Consensus 400 pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~~~~~v~~a~aGdiv~I~l~~~~~~~i~kG~ 479 (902)
||+|+|+++|+++ .|++++|+|.+|+|++||.|.+.|.+...+|++|++++.++++|.|||.+++.+.+++..++++|+
T Consensus 1 p~r~~V~~v~~~~-~g~vv~G~v~~G~i~~Gd~v~i~P~~~~~~V~si~~~~~~~~~a~aGd~v~~~l~~~~~~~v~~G~ 79 (83)
T cd03698 1 PFRLPISDKYKDQ-GGTVVSGKVESGSIQKGDTLLVMPSKESVEVKSIYVDDEEVDYAVAGENVRLKLKGIDEEDISPGD 79 (83)
T ss_pred CeEEEEEeEEEcC-CCcEEEEEEeeeEEeCCCEEEEeCCCcEEEEEEEEECCeECCEECCCCEEEEEECCCCHHHCCCCC
Confidence 6899999999999 999999999999999999999999999999999999999999999999999999988888999999
Q ss_pred cccC
Q psy15197 480 LLSE 483 (902)
Q Consensus 480 vL~~ 483 (902)
+|++
T Consensus 80 vl~~ 83 (83)
T cd03698 80 VLCS 83 (83)
T ss_pred EEeC
Confidence 9874
No 236
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.40 E-value=3.8e-12 Score=128.33 Aligned_cols=107 Identities=22% Similarity=0.275 Sum_probs=67.9
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh-CCCeEEEEEecCCCCCchHH
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL-GVNQLGVVINKLDTVSWSQD 329 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~-~i~~iIVviNKiDl~~~~~~ 329 (902)
..+.||||||+.+|.......++.+|++|+|+|.++... |+ ......+..+... ...++|+|+||+|+... ..
T Consensus 46 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~~--~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~-~~ 119 (174)
T smart00174 46 VELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPAS---FE--NVKEKWYPEVKHFCPNTPIILVGTKLDLRED-KS 119 (174)
T ss_pred EEEEEEECCCCcccchhchhhcCCCCEEEEEEECCCHHH---HH--HHHHHHHHHHHhhCCCCCEEEEecChhhhhC-hh
Confidence 468999999999988777778889999999999986521 11 0111122223222 23457899999998641 11
Q ss_pred HHHHH---------HHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 330 RFQEI---------VTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 330 ~~~~i---------~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
...++ .++...+.+..+. .+++++||++|.|+.+
T Consensus 120 ~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~v~~ 162 (174)
T smart00174 120 TLRELSKQKQEPVTYEQGEALAKRIGA----VKYLECSALTQEGVRE 162 (174)
T ss_pred hhhhhhcccCCCccHHHHHHHHHHcCC----cEEEEecCCCCCCHHH
Confidence 11111 1222333444433 3789999999999998
No 237
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.39 E-value=1.8e-12 Score=131.22 Aligned_cols=107 Identities=21% Similarity=0.229 Sum_probs=67.8
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh-CCCeEEEEEecCCCCCchHH
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL-GVNQLGVVINKLDTVSWSQD 329 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~-~i~~iIVviNKiDl~~~~~~ 329 (902)
..+.||||||+.+|......+++.+|++|+|+|.++... |+ ......+..+... ...++++++||+|+.....
T Consensus 48 ~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~s---f~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~- 121 (173)
T cd04130 48 VRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSS---FQ--NISEKWIPEIRKHNPKAPIILVGTQADLRTDVN- 121 (173)
T ss_pred EEEEEEECCCChhhccccccccCCCcEEEEEEECCCHHH---HH--HHHHHHHHHHHhhCCCCCEEEEeeChhhccChh-
Confidence 578899999999988777778889999999999987621 10 1111223333332 2245789999999864211
Q ss_pred HHHH---------HHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 330 RFQE---------IVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 330 ~~~~---------i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.... ..++...+.+..+. .+++++||++|.|+++
T Consensus 122 ~~~~~~~~~~~~v~~~~~~~~a~~~~~----~~~~e~Sa~~~~~v~~ 164 (173)
T cd04130 122 VLIQLARYGEKPVSQSRAKALAEKIGA----CEYIECSALTQKNLKE 164 (173)
T ss_pred HHHHHhhcCCCCcCHHHHHHHHHHhCC----CeEEEEeCCCCCCHHH
Confidence 0000 01122233333332 2789999999999998
No 238
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.39 E-value=2.5e-12 Score=130.65 Aligned_cols=102 Identities=17% Similarity=0.134 Sum_probs=66.5
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHH-HHHHHh---CCCeEEEEEecCCCCC
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHA-LLVRSL---GVNQLGVVINKLDTVS 325 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l-~~l~~~---~i~~iIVviNKiDl~~ 325 (902)
++.+.||||||+.+|.......+..+|++|+|+|.++... + ......+ .++... +. ++|+|+||+|+..
T Consensus 48 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~-p~ilv~NK~Dl~~ 120 (180)
T cd04137 48 DYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKS---F---EVVKVIYDKILDMLGKESV-PIVLVGNKSDLHT 120 (180)
T ss_pred EEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCC-CEEEEEEchhhhh
Confidence 3578999999999988888888999999999999987521 0 0111222 222222 33 4779999999864
Q ss_pred chHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 326 WSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 326 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
...... .+...+.+..+ .+++++||++|.|+.+
T Consensus 121 ~~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~ 153 (180)
T cd04137 121 QRQVST----EEGKELAESWG-----AAFLESSARENENVEE 153 (180)
T ss_pred cCccCH----HHHHHHHHHcC-----CeEEEEeCCCCCCHHH
Confidence 111111 11222223333 3789999999999998
No 239
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.38 E-value=3.4e-12 Score=130.01 Aligned_cols=116 Identities=23% Similarity=0.236 Sum_probs=77.2
Q ss_pred eeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHH---hCCCeEEEE
Q psy15197 241 VGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRS---LGVNQLGVV 317 (902)
Q Consensus 241 ~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~---~~i~~iIVv 317 (902)
.....+.+++..+.++|.+|...+...+..++..+|++|+|||+++... -....+.+..+.. ....|++|+
T Consensus 48 ~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~------l~e~~~~L~~ll~~~~~~~~piLIl 121 (175)
T PF00025_consen 48 FNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPER------LQEAKEELKELLNDPELKDIPILIL 121 (175)
T ss_dssp EEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGG------HHHHHHHHHHHHTSGGGTTSEEEEE
T ss_pred cccceeeeCcEEEEEEeccccccccccceeeccccceeEEEEeccccee------ecccccchhhhcchhhcccceEEEE
Confidence 3344567789999999999999888888888999999999999986511 1122333322221 233568899
Q ss_pred EecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 318 INKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 318 iNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+||+|+.+... ..++.+.+. +..+. ....+.++.+||++|+|+.+
T Consensus 122 ~NK~D~~~~~~--~~~i~~~l~--l~~l~-~~~~~~v~~~sa~~g~Gv~e 166 (175)
T PF00025_consen 122 ANKQDLPDAMS--EEEIKEYLG--LEKLK-NKRPWSVFSCSAKTGEGVDE 166 (175)
T ss_dssp EESTTSTTSST--HHHHHHHTT--GGGTT-SSSCEEEEEEBTTTTBTHHH
T ss_pred eccccccCcch--hhHHHhhhh--hhhcc-cCCceEEEeeeccCCcCHHH
Confidence 99999875211 122222221 12221 24567899999999999988
No 240
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.38 E-value=1.8e-12 Score=129.81 Aligned_cols=102 Identities=18% Similarity=0.233 Sum_probs=64.3
Q ss_pred CeEEEEEeCCCccc-hHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh-----CCCeEEEEEecCCC
Q psy15197 250 TKYITLLDAPGHKD-FIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL-----GVNQLGVVINKLDT 323 (902)
Q Consensus 250 ~~~i~lIDTPG~~d-f~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~-----~i~~iIVviNKiDl 323 (902)
...+.||||||+.+ +...+...++.+|++|+|+|+++... |+ .....+..+... +. ++|+|+||+|+
T Consensus 46 ~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~~-piilv~nK~Dl 118 (165)
T cd04146 46 QVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSS---FD---EISQLKQLIREIKKRDREI-PVILVGNKADL 118 (165)
T ss_pred EEEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhcCCCCC-CEEEEEECCch
Confidence 34688999999985 44567778899999999999987621 11 112222223321 34 47799999998
Q ss_pred CCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccC-CCCCC
Q psy15197 324 VSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTG-ENLTT 367 (902)
Q Consensus 324 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G-~gI~~ 367 (902)
....... .++...+.+..+ .+++++||++| .|+.+
T Consensus 119 ~~~~~v~----~~~~~~~~~~~~-----~~~~e~Sa~~~~~~v~~ 154 (165)
T cd04146 119 LHYRQVS----TEEGEKLASELG-----CLFFEVSAAEDYDGVHS 154 (165)
T ss_pred HHhCccC----HHHHHHHHHHcC-----CEEEEeCCCCCchhHHH
Confidence 5311100 111222233333 37899999999 48988
No 241
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.37 E-value=1.9e-12 Score=155.01 Aligned_cols=114 Identities=19% Similarity=0.264 Sum_probs=78.1
Q ss_pred cCCeEEeeeEEEEEECCeEEEEEeCCCccchHHH------HHHHH--HHcCEEEEEEECCCCccccccCCchhhHHHHHH
Q psy15197 234 NRGITMDVGQSQFETKTKYITLLDAPGHKDFIPN------MITGA--TQADVALLVVDATRGEFETGFESGGQTREHALL 305 (902)
Q Consensus 234 ~rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~~------~~~~l--~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~ 305 (902)
.+|+|++.....++++++.++++||||+.++... +...+ ..+|++++|+|++... ........
T Consensus 24 ~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~le---------r~l~l~~q 94 (591)
T TIGR00437 24 WPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLE---------RNLYLTLQ 94 (591)
T ss_pred CCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcch---------hhHHHHHH
Confidence 4688999988889999999999999999885432 22222 3689999999998641 22333334
Q ss_pred HHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 306 VRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 306 l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+.+.++| +++|+||+|+.+... ... +...+.+..+ +|++++||++|.|+++
T Consensus 95 l~~~~~P-iIIVlNK~Dl~~~~~--i~~---d~~~L~~~lg-----~pvv~tSA~tg~Gi~e 145 (591)
T TIGR00437 95 LLELGIP-MILALNLVDEAEKKG--IRI---DEEKLEERLG-----VPVVPTSATEGRGIER 145 (591)
T ss_pred HHhcCCC-EEEEEehhHHHHhCC--Chh---hHHHHHHHcC-----CCEEEEECCCCCCHHH
Confidence 4456755 779999999863111 111 1222223333 3899999999999998
No 242
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.37 E-value=6.8e-12 Score=129.50 Aligned_cols=106 Identities=18% Similarity=0.232 Sum_probs=67.8
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHH-HHHHHHH-hCCCeEEEEEecCCCCCchH
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTRE-HALLVRS-LGVNQLGVVINKLDTVSWSQ 328 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~-~l~~l~~-~~i~~iIVviNKiDl~~~~~ 328 (902)
..+.||||||+++|.......++.+|++|+|+|.++... |+ .... ....+.. ....++|+|.||+|+.+...
T Consensus 51 ~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~S---f~---~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~ 124 (191)
T cd01875 51 VSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSS---YE---NVRHKWHPEVCHHCPNVPILLVGTKKDLRNDAD 124 (191)
T ss_pred EEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhCCCCCEEEEEeChhhhcChh
Confidence 578999999999999888888899999999999987521 11 1111 1121221 12235779999999864211
Q ss_pred HHHHHH---------HHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 329 DRFQEI---------VTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 329 ~~~~~i---------~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
..+.+ .++...+.+..+ .++++.+||++|.||.+
T Consensus 125 -~~~~~~~~~~~~v~~~~~~~~a~~~~----~~~~~e~SAk~g~~v~e 167 (191)
T cd01875 125 -TLKKLKEQGQAPITPQQGGALAKQIH----AVKYLECSALNQDGVKE 167 (191)
T ss_pred -hHHHHhhccCCCCCHHHHHHHHHHcC----CcEEEEeCCCCCCCHHH
Confidence 11111 112222333333 13799999999999998
No 243
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.37 E-value=1.4e-11 Score=130.79 Aligned_cols=103 Identities=21% Similarity=0.282 Sum_probs=74.8
Q ss_pred CCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchH
Q psy15197 249 KTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQ 328 (902)
Q Consensus 249 ~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~ 328 (902)
.+.+++|+||||+. ..+...+..+|++++|+|++.+. ..++..++..+...+.|.+|+|+||+|+.+. .
T Consensus 81 ~~~~i~~vDtPg~~---~~~l~~ak~aDvVllviDa~~~~-------~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~-~ 149 (225)
T cd01882 81 KKRRLTFIECPNDI---NAMIDIAKVADLVLLLIDASFGF-------EMETFEFLNILQVHGFPRVMGVLTHLDLFKK-N 149 (225)
T ss_pred CCceEEEEeCCchH---HHHHHHHHhcCEEEEEEecCcCC-------CHHHHHHHHHHHHcCCCeEEEEEeccccCCc-H
Confidence 57789999999964 66777889999999999999873 3467777788888888877679999999742 3
Q ss_pred HHHHHHHHHHHHhhh-hcCCCCCCceEecCCCccCCCC
Q psy15197 329 DRFQEIVTKLGAFLK-QAGFRDSDIEYVPCSGLTGENL 365 (902)
Q Consensus 329 ~~~~~i~~~l~~~l~-~~~~~~~~~~ii~iSA~~G~gI 365 (902)
..++++.+++...+. .+ + ...+++++||++...+
T Consensus 150 ~~~~~~~~~l~~~~~~~~-~--~~~ki~~iSa~~~~~~ 184 (225)
T cd01882 150 KTLRKTKKRLKHRFWTEV-Y--QGAKLFYLSGIVHGRY 184 (225)
T ss_pred HHHHHHHHHHHHHHHHhh-C--CCCcEEEEeeccCCCC
Confidence 334555555555332 21 1 1248999999977433
No 244
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.37 E-value=5.8e-12 Score=128.53 Aligned_cols=109 Identities=22% Similarity=0.188 Sum_probs=69.8
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh-CCCeEEEEEecCCCCCchH
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL-GVNQLGVVINKLDTVSWSQ 328 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~-~i~~iIVviNKiDl~~~~~ 328 (902)
...+.||||+|+++|...+...++.+|++|||+|.++... |+. .....+..+... ...++|+|.||+|+.+...
T Consensus 48 ~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~S---f~~--~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~ 122 (176)
T cd04133 48 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRAS---YEN--VLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQ 122 (176)
T ss_pred EEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCCHHH---HHH--HHHHHHHHHHHhCCCCCEEEEEeChhhccChh
Confidence 3678999999999998888889999999999999987521 211 001223333322 2245789999999864210
Q ss_pred HH------HHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 329 DR------FQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 329 ~~------~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.. ..-..++...+.+..+. .+++.+||++|.||++
T Consensus 123 ~~~~~~~~~~v~~~~~~~~a~~~~~----~~~~E~SAk~~~nV~~ 163 (176)
T cd04133 123 YLADHPGASPITTAQGEELRKQIGA----AAYIECSSKTQQNVKA 163 (176)
T ss_pred hhhhccCCCCCCHHHHHHHHHHcCC----CEEEECCCCcccCHHH
Confidence 00 00011223333333332 2689999999999998
No 245
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.36 E-value=1.8e-11 Score=124.48 Aligned_cols=119 Identities=21% Similarity=0.205 Sum_probs=78.9
Q ss_pred ccCCeEEeeeEEEEEECCeEEEEEeCCCccc----------hHHHHHHHHH---HcCEEEEEEECCCCccccccCCchhh
Q psy15197 233 LNRGITMDVGQSQFETKTKYITLLDAPGHKD----------FIPNMITGAT---QADVALLVVDATRGEFETGFESGGQT 299 (902)
Q Consensus 233 ~~rGiTid~~~~~~~~~~~~i~lIDTPG~~d----------f~~~~~~~l~---~aD~aIlVVDa~~g~~E~~~~~~~qt 299 (902)
..+|.|+.+.. |++++. +.|+|.||+.- .-..+..++. .-.+++++||+..++. ..+
T Consensus 55 ktPGrTq~iNf--f~~~~~-~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~-------~~D 124 (200)
T COG0218 55 KTPGRTQLINF--FEVDDE-LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPK-------DLD 124 (200)
T ss_pred CCCCccceeEE--EEecCc-EEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCc-------HHH
Confidence 45677777654 444443 88999999742 3334444453 4678999999998844 467
Q ss_pred HHHHHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhh-hcCCCCCCceEecCCCccCCCCCC
Q psy15197 300 REHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLK-QAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 300 ~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~-~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.+.+.++...+++ ++|++||+|++.. ....+.+..+...+. ...+ .. .++..|+.++.|+++
T Consensus 125 ~em~~~l~~~~i~-~~vv~tK~DKi~~--~~~~k~l~~v~~~l~~~~~~--~~-~~~~~ss~~k~Gi~~ 187 (200)
T COG0218 125 REMIEFLLELGIP-VIVVLTKADKLKK--SERNKQLNKVAEELKKPPPD--DQ-WVVLFSSLKKKGIDE 187 (200)
T ss_pred HHHHHHHHHcCCC-eEEEEEccccCCh--hHHHHHHHHHHHHhcCCCCc--cc-eEEEEecccccCHHH
Confidence 8899999999988 5599999999862 222333333332222 1111 11 278889999999988
No 246
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.35 E-value=1.6e-11 Score=125.95 Aligned_cols=107 Identities=19% Similarity=0.197 Sum_probs=69.2
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh-CCCeEEEEEecCCCCCchHH
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL-GVNQLGVVINKLDTVSWSQD 329 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~-~i~~iIVviNKiDl~~~~~~ 329 (902)
..+.||||+|.++|.......++.+|++|||+|.++... |+ .-....+..+... ...++|+|.||+|+.+.. .
T Consensus 53 ~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~S---f~--~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~-~ 126 (182)
T cd04172 53 IELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPET---LD--SVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDL-T 126 (182)
T ss_pred EEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHH---HH--HHHHHHHHHHHHHCCCCCEEEEeEChhhhcCh-h
Confidence 578999999999998888888899999999999987521 11 0001222223222 224577999999985310 0
Q ss_pred HHH---------HHHHHHHHhhhhcCCCCCCceEecCCCccCCC-CCC
Q psy15197 330 RFQ---------EIVTKLGAFLKQAGFRDSDIEYVPCSGLTGEN-LTT 367 (902)
Q Consensus 330 ~~~---------~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~g-I~~ 367 (902)
... -..++...+.+..+. .+++.+||++|.| |.+
T Consensus 127 ~~~~~~~~~~~~v~~~~~~~~a~~~~~----~~~~E~SAk~~~n~v~~ 170 (182)
T cd04172 127 TLVELSNHRQTPVSYDQGANMAKQIGA----ATYIECSALQSENSVRD 170 (182)
T ss_pred hHHHHHhcCCCCCCHHHHHHHHHHcCC----CEEEECCcCCCCCCHHH
Confidence 000 011234444455442 3799999999998 988
No 247
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.35 E-value=1.7e-11 Score=121.40 Aligned_cols=103 Identities=19% Similarity=0.233 Sum_probs=66.0
Q ss_pred EEEEEeCCCccc----------hHHHHHHHHH---HcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEE
Q psy15197 252 YITLLDAPGHKD----------FIPNMITGAT---QADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVI 318 (902)
Q Consensus 252 ~i~lIDTPG~~d----------f~~~~~~~l~---~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVvi 318 (902)
.+.++||||+.. +...+...+. ..+++++|+|...... ....+.+..+...+.+ +++++
T Consensus 46 ~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~-------~~~~~~~~~l~~~~~~-vi~v~ 117 (170)
T cd01876 46 KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPT-------EIDLEMLDWLEELGIP-FLVVL 117 (170)
T ss_pred eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCC-------HhHHHHHHHHHHcCCC-EEEEE
Confidence 899999999754 2222333333 4678999999986522 3445556667766655 67999
Q ss_pred ecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 319 NKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 319 NKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
||+|+.. ..........+...++... ...+++++||+++.|+.+
T Consensus 118 nK~D~~~--~~~~~~~~~~~~~~l~~~~---~~~~~~~~Sa~~~~~~~~ 161 (170)
T cd01876 118 TKADKLK--KSELAKALKEIKKELKLFE---IDPPIILFSSLKGQGIDE 161 (170)
T ss_pred EchhcCC--hHHHHHHHHHHHHHHHhcc---CCCceEEEecCCCCCHHH
Confidence 9999864 2223333334444443211 224789999999999988
No 248
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.35 E-value=1.7e-11 Score=125.36 Aligned_cols=107 Identities=20% Similarity=0.195 Sum_probs=68.3
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh-CCCeEEEEEecCCCCCchHH
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL-GVNQLGVVINKLDTVSWSQD 329 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~-~i~~iIVviNKiDl~~~~~~ 329 (902)
..+.||||||+++|.......++.+|++|+|+|.++... |+ ......+..+... ...++|+|.||+|+.+.. .
T Consensus 49 ~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~S---f~--~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~-~ 122 (178)
T cd04131 49 IELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPET---LD--SVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDL-S 122 (178)
T ss_pred EEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCChhh---HH--HHHHHHHHHHHHHCCCCCEEEEEEChhhhcCh-h
Confidence 578899999999988877888899999999999987621 21 1011222233332 234577999999985310 0
Q ss_pred HHHH--------H-HHHHHHhhhhcCCCCCCceEecCCCccCCC-CCC
Q psy15197 330 RFQE--------I-VTKLGAFLKQAGFRDSDIEYVPCSGLTGEN-LTT 367 (902)
Q Consensus 330 ~~~~--------i-~~~l~~~l~~~~~~~~~~~ii~iSA~~G~g-I~~ 367 (902)
...+ + .++...+.+..+. .+++.+||++|+| |.+
T Consensus 123 ~~~~~~~~~~~~v~~~e~~~~a~~~~~----~~~~E~SA~~~~~~v~~ 166 (178)
T cd04131 123 TLMELSHQRQAPVSYEQGCAIAKQLGA----EIYLECSAFTSEKSVRD 166 (178)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHhCC----CEEEECccCcCCcCHHH
Confidence 0000 1 1233344444443 2789999999995 988
No 249
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.34 E-value=1.1e-11 Score=132.24 Aligned_cols=52 Identities=35% Similarity=0.349 Sum_probs=40.4
Q ss_pred CeEEeeeEEEEEECCeEEEEEeCCCccc-------hHHHHHHHHHHcCEEEEEEECCCC
Q psy15197 236 GITMDVGQSQFETKTKYITLLDAPGHKD-------FIPNMITGATQADVALLVVDATRG 287 (902)
Q Consensus 236 GiTid~~~~~~~~~~~~i~lIDTPG~~d-------f~~~~~~~l~~aD~aIlVVDa~~g 287 (902)
++|++.....+.+++..+.++||||+.+ +.......++.+|++++|+|+++.
T Consensus 32 ~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~ 90 (233)
T cd01896 32 FTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKP 90 (233)
T ss_pred CccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCcc
Confidence 3455555666778899999999999854 334567788899999999998764
No 250
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.34 E-value=1.1e-11 Score=125.05 Aligned_cols=106 Identities=20% Similarity=0.206 Sum_probs=65.2
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHH-HHHHHHHh-CCCeEEEEEecCCCCCchH
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTRE-HALLVRSL-GVNQLGVVINKLDTVSWSQ 328 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~-~l~~l~~~-~i~~iIVviNKiDl~~~~~ 328 (902)
..+.||||||++++.......+..+|++++|+|.+.... |+ .... .+..+... ...++++|+||+|+.....
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s---~~---~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 122 (175)
T cd01870 49 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDS---LE---NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 122 (175)
T ss_pred EEEEEEeCCCchhhhhccccccCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhCCCCCEEEEeeChhcccChh
Confidence 468999999999887766677889999999999986411 10 1111 12222221 2235779999999864211
Q ss_pred HHHHHH---------HHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 329 DRFQEI---------VTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 329 ~~~~~i---------~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
...++ ..+...+.+..+. .+++++||++|.|+++
T Consensus 123 -~~~~i~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~~~~v~~ 165 (175)
T cd01870 123 -TRRELAKMKQEPVKPEEGRDMANKIGA----FGYMECSAKTKEGVRE 165 (175)
T ss_pred -hhhhhhhccCCCccHHHHHHHHHHcCC----cEEEEeccccCcCHHH
Confidence 11111 0112222233322 3789999999999998
No 251
>KOG0084|consensus
Probab=99.34 E-value=7.9e-12 Score=125.47 Aligned_cols=117 Identities=17% Similarity=0.127 Sum_probs=78.8
Q ss_pred EEeeeEEEEEECC--eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEE
Q psy15197 238 TMDVGQSQFETKT--KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLG 315 (902)
Q Consensus 238 Tid~~~~~~~~~~--~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iI 315 (902)
-+|....++++.+ .++.+|||+|+++|...+.++++.|+++|+|.|.+.. .+|+-..++...+..-...++++ +
T Consensus 43 GVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~---~SF~~v~~Wi~Ei~~~~~~~v~~-l 118 (205)
T KOG0084|consen 43 GVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQ---ESFNNVKRWIQEIDRYASENVPK-L 118 (205)
T ss_pred eeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccH---HHhhhHHHHHHHhhhhccCCCCe-E
Confidence 3445555555554 4799999999999999999999999999999999975 34543344333332222235554 5
Q ss_pred EEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCce-EecCCCccCCCCCC
Q psy15197 316 VVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIE-YVPCSGLTGENLTT 367 (902)
Q Consensus 316 VviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~-ii~iSA~~G~gI~~ 367 (902)
+|.||+|+.+...-.. ++...+....+. | ++++||+++.|+++
T Consensus 119 LVGNK~Dl~~~~~v~~----~~a~~fa~~~~~-----~~f~ETSAK~~~NVe~ 162 (205)
T KOG0084|consen 119 LVGNKCDLTEKRVVST----EEAQEFADELGI-----PIFLETSAKDSTNVED 162 (205)
T ss_pred EEeeccccHhheecCH----HHHHHHHHhcCC-----cceeecccCCccCHHH
Confidence 8999999864211111 122333444443 5 89999999999887
No 252
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.34 E-value=5.4e-12 Score=131.38 Aligned_cols=100 Identities=14% Similarity=0.165 Sum_probs=68.2
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHH--hCCCeEEEEEecCCCCCch
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRS--LGVNQLGVVINKLDTVSWS 327 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~--~~i~~iIVviNKiDl~~~~ 327 (902)
...+.||||||+.+|...+..+++.+|++|+|+|+++... |. .....+..+.. .++ ++|+|.||+|+....
T Consensus 43 ~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S---~~---~i~~w~~~i~~~~~~~-piilvgNK~Dl~~~~ 115 (200)
T smart00176 43 PIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVT---YK---NVPNWHRDLVRVCENI-PIVLCGNKVDVKDRK 115 (200)
T ss_pred EEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCChHH---HH---HHHHHHHHHHHhCCCC-CEEEEEECccccccc
Confidence 4689999999999999989899999999999999998622 11 11222232333 234 477999999985311
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 328 QDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 328 ~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
. ..+ .+ .+.+..+ ++++++||++|.||.+
T Consensus 116 v-~~~----~~-~~~~~~~-----~~~~e~SAk~~~~v~~ 144 (200)
T smart00176 116 V-KAK----SI-TFHRKKN-----LQYYDISAKSNYNFEK 144 (200)
T ss_pred C-CHH----HH-HHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 1 111 11 1222222 4899999999999998
No 253
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.34 E-value=7.3e-12 Score=128.93 Aligned_cols=108 Identities=19% Similarity=0.189 Sum_probs=67.1
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh-CCCeEEEEEecCCCCCchHH
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL-GVNQLGVVINKLDTVSWSQD 329 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~-~i~~iIVviNKiDl~~~~~~ 329 (902)
..+.||||||+.+|.......+..+|++|+|+|.++... |+ ......+..+... ...++|+|.||+|+......
T Consensus 48 ~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~s---f~--~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~ 122 (189)
T cd04134 48 IELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDS---LE--NVESKWLGEIREHCPGVKLVLVALKCDLREARNE 122 (189)
T ss_pred EEEEEEECCCChhccccccccccCCCEEEEEEECCCHHH---HH--HHHHHHHHHHHHhCCCCCEEEEEEChhhccChhh
Confidence 578999999999887777777889999999999987521 11 0111122233322 22357899999998652211
Q ss_pred H--HHH------HHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 330 R--FQE------IVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 330 ~--~~~------i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
. ... ..++...+.+..+ .++++++||++|.|+++
T Consensus 123 ~~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~e~SAk~~~~v~e 164 (189)
T cd04134 123 RDDLQRYGKHTISYEEGLAVAKRIN----ALRYLECSAKLNRGVNE 164 (189)
T ss_pred HHHHhhccCCCCCHHHHHHHHHHcC----CCEEEEccCCcCCCHHH
Confidence 1 000 0111222233322 24789999999999998
No 254
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=99.34 E-value=6.8e-12 Score=111.71 Aligned_cols=82 Identities=34% Similarity=0.671 Sum_probs=77.5
Q ss_pred CceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCcEEEEEEEEEceEeeeeeccCCeEEEeeeccccccceeec
Q psy15197 400 PLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYVDEMSVSAAYAGDNVSVTLLNYDQQNVSVGF 479 (902)
Q Consensus 400 pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~~~~~v~~a~aGdiv~I~l~~~~~~~i~kG~ 479 (902)
||+|+|+++|+.. |+++.|+|.+|+|++||.+.+.|.+...+|++|++++.++++|.|||.++|.+.+++..++++|+
T Consensus 1 plr~~I~~v~~~~--g~vv~G~v~~G~i~~G~~v~i~P~~~~~~V~si~~~~~~~~~a~aGd~v~l~l~~i~~~~v~~G~ 78 (82)
T cd04089 1 PLRLPIIDKYKDM--GTVVLGKVESGTIKKGDKLLVMPNKTQVEVLSIYNEDVEVRYARPGENVRLRLKGIEEEDISPGF 78 (82)
T ss_pred CeEEEEEeEEEcC--CEEEEEEEeeeEEecCCEEEEeCCCcEEEEEEEEECCEECCEECCCCEEEEEecCCCHHHCCCCC
Confidence 6899999999864 89999999999999999999999999999999999999999999999999999988889999999
Q ss_pred cccC
Q psy15197 480 LLSE 483 (902)
Q Consensus 480 vL~~ 483 (902)
+|++
T Consensus 79 vl~~ 82 (82)
T cd04089 79 VLCS 82 (82)
T ss_pred EEeC
Confidence 9874
No 255
>KOG0078|consensus
Probab=99.33 E-value=6.1e-12 Score=128.01 Aligned_cols=112 Identities=22% Similarity=0.167 Sum_probs=76.5
Q ss_pred eeeEEEEEEC--CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh---CCCeE
Q psy15197 240 DVGQSQFETK--TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL---GVNQL 314 (902)
Q Consensus 240 d~~~~~~~~~--~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~---~i~~i 314 (902)
|.....++.+ ...+.+|||+|+++|...+.++++.|++++||+|.+.. .+|+- ....+..+.+. +++ +
T Consensus 48 DFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne---~Sfen---i~~W~~~I~e~a~~~v~-~ 120 (207)
T KOG0078|consen 48 DFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNE---KSFEN---IRNWIKNIDEHASDDVV-K 120 (207)
T ss_pred EEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccch---HHHHH---HHHHHHHHHhhCCCCCc-E
Confidence 3333334444 45789999999999999999999999999999999875 23321 22233333332 444 6
Q ss_pred EEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 315 GVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 315 IVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
++|.||+|+.... .--.+.-+++..++|. +++++||++|.||++
T Consensus 121 ~LvGNK~D~~~~R----~V~~e~ge~lA~e~G~-----~F~EtSAk~~~NI~e 164 (207)
T KOG0078|consen 121 ILVGNKCDLEEKR----QVSKERGEALAREYGI-----KFFETSAKTNFNIEE 164 (207)
T ss_pred EEeeccccccccc----cccHHHHHHHHHHhCC-----eEEEccccCCCCHHH
Confidence 6999999986411 1111223344555565 899999999999998
No 256
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.33 E-value=1.3e-11 Score=116.64 Aligned_cols=77 Identities=27% Similarity=0.360 Sum_probs=54.4
Q ss_pred CCeEEeeeEEEEEECCeEEEEEeCCCccc---------hHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHH
Q psy15197 235 RGITMDVGQSQFETKTKYITLLDAPGHKD---------FIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALL 305 (902)
Q Consensus 235 rGiTid~~~~~~~~~~~~i~lIDTPG~~d---------f~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~ 305 (902)
.++|.......+.+++..+.|+||||..+ ........+..+|++++|+|+... .......++..
T Consensus 31 ~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~-------~~~~~~~~~~~ 103 (116)
T PF01926_consen 31 PGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNP-------ITEDDKNILRE 103 (116)
T ss_dssp TTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSH-------SHHHHHHHHHH
T ss_pred ccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCC-------CCHHHHHHHHH
Confidence 34455554556777899999999999864 334466666789999999998764 22345556566
Q ss_pred HHHhCCCeEEEEEec
Q psy15197 306 VRSLGVNQLGVVINK 320 (902)
Q Consensus 306 l~~~~i~~iIVviNK 320 (902)
++ .+ +++++|+||
T Consensus 104 l~-~~-~~~i~v~NK 116 (116)
T PF01926_consen 104 LK-NK-KPIILVLNK 116 (116)
T ss_dssp HH-TT-SEEEEEEES
T ss_pred Hh-cC-CCEEEEEcC
Confidence 64 44 568899998
No 257
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=99.33 E-value=6.6e-12 Score=113.09 Aligned_cols=83 Identities=27% Similarity=0.490 Sum_probs=78.2
Q ss_pred ceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCC----cEEEEEEEEEceEeeeeeccCCeEEEeeeccccccce
Q psy15197 401 LRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQN----EVTTVKAVYVDEMSVSAAYAGDNVSVTLLNYDQQNVS 476 (902)
Q Consensus 401 l~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~----~~~~V~sI~~~~~~v~~a~aGdiv~I~l~~~~~~~i~ 476 (902)
|+|+|+++|++++.|+|++|+|++|.|++||++.++|.+ ...+|++|++++.++++|.|||.++|.+..++..+++
T Consensus 1 ~~~~I~~vf~v~g~GtVv~G~v~~G~v~~g~~v~~~P~~~g~~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~ 80 (87)
T cd03694 1 AEFQIDEIYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGSFRPVTVKSIHRNRSPVRVVRAGQSASLALKKIDRSLLR 80 (87)
T ss_pred CEEEEEeEEEcCCcceEEEEEEecCEEeCCCEEEECCCCCCCEeEEEEEEEEECCeECCEECCCCEEEEEEcCCCHHHcC
Confidence 579999999999999999999999999999999999984 5789999999999999999999999999988889999
Q ss_pred eeccccC
Q psy15197 477 VGFLLSE 483 (902)
Q Consensus 477 kG~vL~~ 483 (902)
+|++|+.
T Consensus 81 ~G~vl~~ 87 (87)
T cd03694 81 KGMVLVS 87 (87)
T ss_pred CccEEeC
Confidence 9999873
No 258
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.31 E-value=2.7e-11 Score=128.87 Aligned_cols=110 Identities=18% Similarity=0.151 Sum_probs=69.8
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh-CCCeEEEEEecCCCCCchH
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL-GVNQLGVVINKLDTVSWSQ 328 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~-~i~~iIVviNKiDl~~~~~ 328 (902)
...+.||||+|.++|......+++.||++|||+|.++... |+ ......+..+... ...++|+|.||+|+.+...
T Consensus 60 ~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~S---f~--~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~ 134 (232)
T cd04174 60 RVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPET---VD--SALKKWKAEIMDYCPSTRILLIGCKTDLRTDLS 134 (232)
T ss_pred EEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHH---HH--HHHHHHHHHHHHhCCCCCEEEEEECcccccccc
Confidence 3578999999999998888888999999999999987621 11 0011222233322 2235779999999853100
Q ss_pred HH--------HHHHHHHHHHhhhhcCCCCCCceEecCCCccCC-CCCCC
Q psy15197 329 DR--------FQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGE-NLTTP 368 (902)
Q Consensus 329 ~~--------~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~-gI~~~ 368 (902)
.. ..-..++...+.+..+. .+++.+||++|. ||+++
T Consensus 135 ~~~~l~~~~~~~Vs~~e~~~~a~~~~~----~~~~EtSAktg~~~V~e~ 179 (232)
T cd04174 135 TLMELSNQKQAPISYEQGCALAKQLGA----EVYLECSAFTSEKSIHSI 179 (232)
T ss_pred hhhhhccccCCcCCHHHHHHHHHHcCC----CEEEEccCCcCCcCHHHH
Confidence 00 00011234444555543 158999999997 79983
No 259
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.31 E-value=1e-11 Score=145.27 Aligned_cols=114 Identities=24% Similarity=0.295 Sum_probs=80.3
Q ss_pred cCCeEEeeeEEEEEECCeEEEEEeCCCccchH------HHHHHHHH--HcCEEEEEEECCCCccccccCCchhhHHHHHH
Q psy15197 234 NRGITMDVGQSQFETKTKYITLLDAPGHKDFI------PNMITGAT--QADVALLVVDATRGEFETGFESGGQTREHALL 305 (902)
Q Consensus 234 ~rGiTid~~~~~~~~~~~~i~lIDTPG~~df~------~~~~~~l~--~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~ 305 (902)
=.|+|++.+...+..+++.+.++|+||...+. +-+...+. .+|++|.|+||+.-. ........
T Consensus 33 wpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnLe---------RnLyltlQ 103 (653)
T COG0370 33 WPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNLE---------RNLYLTLQ 103 (653)
T ss_pred CCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchHH---------HHHHHHHH
Confidence 47899999999999999999999999987621 11333333 579999999998631 22333345
Q ss_pred HHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 306 VRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 306 l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+.++|.| +|+++|++|.... +.+.-...++-+.+|. |++++||++|.|+++
T Consensus 104 LlE~g~p-~ilaLNm~D~A~~-----~Gi~ID~~~L~~~LGv-----PVv~tvA~~g~G~~~ 154 (653)
T COG0370 104 LLELGIP-MILALNMIDEAKK-----RGIRIDIEKLSKLLGV-----PVVPTVAKRGEGLEE 154 (653)
T ss_pred HHHcCCC-eEEEeccHhhHHh-----cCCcccHHHHHHHhCC-----CEEEEEeecCCCHHH
Confidence 6677887 7799999997531 1111112222334454 999999999999998
No 260
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.31 E-value=8.5e-12 Score=131.95 Aligned_cols=102 Identities=17% Similarity=0.107 Sum_probs=62.4
Q ss_pred CCeEEEEEeCCCccchHHHHHHHHH-HcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh---CCCeEEEEEecCCCC
Q psy15197 249 KTKYITLLDAPGHKDFIPNMITGAT-QADVALLVVDATRGEFETGFESGGQTREHALLVRSL---GVNQLGVVINKLDTV 324 (902)
Q Consensus 249 ~~~~i~lIDTPG~~df~~~~~~~l~-~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~---~i~~iIVviNKiDl~ 324 (902)
....+.||||||+..+.. ...+. .+|++|+|+|+++... |+ .....+..+... .-.++|+|.||+|+.
T Consensus 48 ~~~~l~i~Dt~G~~~~~~--~~~~~~~ad~iilV~d~td~~S---~~---~~~~~~~~l~~~~~~~~~piilV~NK~Dl~ 119 (221)
T cd04148 48 EESTLVVIDHWEQEMWTE--DSCMQYQGDAFVVVYSVTDRSS---FE---RASELRIQLRRNRQLEDRPIILVGNKSDLA 119 (221)
T ss_pred EEEEEEEEeCCCcchHHH--hHHhhcCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCCEEEEEEChhcc
Confidence 346789999999984322 23455 8999999999987521 11 122233333332 123578999999986
Q ss_pred CchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 325 SWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 325 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.......+ +...+....+ ++++++||++|.||.+
T Consensus 120 ~~~~v~~~----~~~~~a~~~~-----~~~~e~SA~~~~gv~~ 153 (221)
T cd04148 120 RSREVSVQ----EGRACAVVFD-----CKFIETSAGLQHNVDE 153 (221)
T ss_pred ccceecHH----HHHHHHHHcC-----CeEEEecCCCCCCHHH
Confidence 42111111 1112222233 3789999999999998
No 261
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.29 E-value=5.7e-11 Score=125.65 Aligned_cols=106 Identities=19% Similarity=0.219 Sum_probs=67.6
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHH-HHHHHh-CCCeEEEEEecCCCCCchH
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHA-LLVRSL-GVNQLGVVINKLDTVSWSQ 328 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l-~~l~~~-~i~~iIVviNKiDl~~~~~ 328 (902)
..+.||||+|.+.|......++..+|++|+|+|.++... |+ .....+ ..+... .-.++|+|.||+|+.+. .
T Consensus 49 v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~S---f~---~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~-~ 121 (222)
T cd04173 49 IELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPET---LD---SVLKKWQGETQEFCPNAKVVLVGCKLDMRTD-L 121 (222)
T ss_pred EEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhCCCCCEEEEEECcccccc-h
Confidence 578899999999998888888999999999999987621 11 111111 122221 12347799999998641 1
Q ss_pred HHHHH--------H-HHHHHHhhhhcCCCCCCceEecCCCccCCC-CCC
Q psy15197 329 DRFQE--------I-VTKLGAFLKQAGFRDSDIEYVPCSGLTGEN-LTT 367 (902)
Q Consensus 329 ~~~~~--------i-~~~l~~~l~~~~~~~~~~~ii~iSA~~G~g-I~~ 367 (902)
..... + .++...+.++++. ++++.+||+++.+ |.+
T Consensus 122 ~~~~~~~~~~~~pIs~e~g~~~ak~~~~----~~y~E~SAk~~~~~V~~ 166 (222)
T cd04173 122 ATLRELSKQRLIPVTHEQGTVLAKQVGA----VSYVECSSRSSERSVRD 166 (222)
T ss_pred hhhhhhhhccCCccCHHHHHHHHHHcCC----CEEEEcCCCcCCcCHHH
Confidence 11111 1 1223333444442 3899999999885 988
No 262
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=99.29 E-value=1.5e-11 Score=109.77 Aligned_cols=82 Identities=30% Similarity=0.539 Sum_probs=78.5
Q ss_pred ceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCcEEEEEEEEEceEeeeeeccCCeEEEeeeccccccceeecc
Q psy15197 401 LRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYVDEMSVSAAYAGDNVSVTLLNYDQQNVSVGFL 480 (902)
Q Consensus 401 l~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~~~~~v~~a~aGdiv~I~l~~~~~~~i~kG~v 480 (902)
|+|+|.++|++++.|+++.|+|.+|++++|+++.+.|.+...+|++|++++.++++|.|||.++|.+.+.+.+++++|++
T Consensus 1 lr~~i~~~~~~~~~g~vv~G~v~sG~i~~g~~v~~~p~~~~~~V~sI~~~~~~~~~a~aGd~v~i~l~~~~~~~i~~G~v 80 (83)
T cd03696 1 FRLPIDRVFTVKGQGTVVTGTVLSGSVKVGDKVEILPLGEETRVRSIQVHGKDVEEAKAGDRVALNLTGVDAKDLERGDV 80 (83)
T ss_pred CEEEEEEEEEcCCcEEEEEEEEeecEEeCCCEEEECCCCceEEEEEEEECCcCcCEEcCCCEEEEEEcCCCHHHcCCccE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999887789999998
Q ss_pred cc
Q psy15197 481 LS 482 (902)
Q Consensus 481 L~ 482 (902)
|+
T Consensus 81 l~ 82 (83)
T cd03696 81 LS 82 (83)
T ss_pred Ec
Confidence 86
No 263
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.29 E-value=1.3e-11 Score=138.83 Aligned_cols=123 Identities=28% Similarity=0.325 Sum_probs=98.9
Q ss_pred ccCCeEEeeeEEEEEECCeEEEEEeCCCccc---------hHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHH
Q psy15197 233 LNRGITMDVGQSQFETKTKYITLLDAPGHKD---------FIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHA 303 (902)
Q Consensus 233 ~~rGiTid~~~~~~~~~~~~i~lIDTPG~~d---------f~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l 303 (902)
...|+|+|..+...+|.++.+.+|||+|+.. ...++..++..||++|||||+..|++ +.++++.
T Consensus 33 D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git-------~~D~~ia 105 (444)
T COG1160 33 DTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGIT-------PADEEIA 105 (444)
T ss_pred cCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCC-------HHHHHHH
Confidence 6789999999999999999999999999874 56678889999999999999999955 6888888
Q ss_pred HHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCcccH
Q psy15197 304 LLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCL 383 (902)
Q Consensus 304 ~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~L 383 (902)
.+++..+. ++|+|+||+|.... +.... -+-.+|+. .+++|||.+|.|+.+ |
T Consensus 106 ~~Lr~~~k-pviLvvNK~D~~~~-----e~~~~----efyslG~g----~~~~ISA~Hg~Gi~d---------------L 156 (444)
T COG1160 106 KILRRSKK-PVILVVNKIDNLKA-----EELAY----EFYSLGFG----EPVPISAEHGRGIGD---------------L 156 (444)
T ss_pred HHHHhcCC-CEEEEEEcccCchh-----hhhHH----HHHhcCCC----CceEeehhhccCHHH---------------H
Confidence 88886654 47799999997521 11111 12345664 679999999999998 7
Q ss_pred HHHHHhcC
Q psy15197 384 LDVIDNFK 391 (902)
Q Consensus 384 le~L~~l~ 391 (902)
++.+....
T Consensus 157 ld~v~~~l 164 (444)
T COG1160 157 LDAVLELL 164 (444)
T ss_pred HHHHHhhc
Confidence 77776654
No 264
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=99.29 E-value=9.7e-12 Score=112.03 Aligned_cols=84 Identities=30% Similarity=0.480 Sum_probs=78.6
Q ss_pred ceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccC--CcEEEEEEEEEceEeeeeeccCCeEEEeeeccccccceee
Q psy15197 401 LRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQ--NEVTTVKAVYVDEMSVSAAYAGDNVSVTLLNYDQQNVSVG 478 (902)
Q Consensus 401 l~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~--~~~~~V~sI~~~~~~v~~a~aGdiv~I~l~~~~~~~i~kG 478 (902)
|+|+|+++|++++.|+|+.|+|.+|++++||.+.+.|. +...+|++|++++.++++|.|||.++|.+...+..++.+|
T Consensus 1 ~r~~V~~v~~~~g~G~vv~G~v~~G~v~~gd~v~~~p~~~~~~~~V~si~~~~~~~~~a~~G~~v~l~l~~~~~~~v~rG 80 (87)
T cd03697 1 FLMPIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGETLKTTVTGIEMFRKTLDEAEAGDNVGVLLRGVKREDVERG 80 (87)
T ss_pred CEeeEEEEEeCCCcEEEEEEEECCCCCccCCEEEEeCCCCCceEEEEEEEECCcCCCEECCCCEEEEEECCCCHHHcCCc
Confidence 68999999999999999999999999999999999886 5678999999999999999999999999998888899999
Q ss_pred ccccCC
Q psy15197 479 FLLSEL 484 (902)
Q Consensus 479 ~vL~~~ 484 (902)
++|+++
T Consensus 81 ~vl~~~ 86 (87)
T cd03697 81 MVLAKP 86 (87)
T ss_pred cEEecC
Confidence 999875
No 265
>KOG0073|consensus
Probab=99.28 E-value=5e-11 Score=116.04 Aligned_cols=117 Identities=23% Similarity=0.262 Sum_probs=80.0
Q ss_pred EEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHH-HHHH---hCCCe
Q psy15197 238 TMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHAL-LVRS---LGVNQ 313 (902)
Q Consensus 238 Tid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~-~l~~---~~i~~ 313 (902)
|.......++++++.++++|..|+..+...+..+...+|+.|+|||+++... . .+...++. ++.. .| .+
T Consensus 47 t~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r-----~-~e~~~~L~~lL~eerlaG-~~ 119 (185)
T KOG0073|consen 47 TLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMR-----M-QECKQELTELLVEERLAG-AP 119 (185)
T ss_pred ccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHH-----H-HHHHHHHHHHHhhhhhcC-Cc
Confidence 4444455688899999999999999999999999999999999999987521 0 12222221 1111 24 34
Q ss_pred EEEEEecCCCCC-chHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 314 LGVVINKLDTVS-WSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 314 iIVviNKiDl~~-~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
++|+.||.|+.. .+.+.+..+ -.+..+++.. .++++-+||.+|+++.+
T Consensus 120 ~Lvlank~dl~~~l~~~~i~~~-~~L~~l~ks~-----~~~l~~cs~~tge~l~~ 168 (185)
T KOG0073|consen 120 LLVLANKQDLPGALSLEEISKA-LDLEELAKSH-----HWRLVKCSAVTGEDLLE 168 (185)
T ss_pred eEEEEecCcCccccCHHHHHHh-hCHHHhcccc-----CceEEEEeccccccHHH
Confidence 779999999974 222222222 2234444443 35899999999999887
No 266
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.28 E-value=2e-11 Score=126.62 Aligned_cols=129 Identities=16% Similarity=0.241 Sum_probs=79.1
Q ss_pred CCeEEeeeEEEEEECCeEEEEEeCCCccch-------HHHHHHHH----HHcCEEEEEEECCCCccccccCCchhhHHHH
Q psy15197 235 RGITMDVGQSQFETKTKYITLLDAPGHKDF-------IPNMITGA----TQADVALLVVDATRGEFETGFESGGQTREHA 303 (902)
Q Consensus 235 rGiTid~~~~~~~~~~~~i~lIDTPG~~df-------~~~~~~~l----~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l 303 (902)
.|+|.+.......+.+..++||||||+.+. ...+...+ ..+|++|+|+|+.. .. ..+...+
T Consensus 33 ~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t-------~~d~~~l 104 (196)
T cd01852 33 SSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FT-------EEEEQAV 104 (196)
T ss_pred CCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cC-------HHHHHHH
Confidence 455666666777788999999999998763 22233222 35799999999876 33 3455556
Q ss_pred HHHHHh-C---CCeEEEEEecCCCCCchHHHHHHH----HHHHHHhhhhcCCCCCCceEecC-----CCccCCCCCCCCC
Q psy15197 304 LLVRSL-G---VNQLGVVINKLDTVSWSQDRFQEI----VTKLGAFLKQAGFRDSDIEYVPC-----SGLTGENLTTPSQ 370 (902)
Q Consensus 304 ~~l~~~-~---i~~iIVviNKiDl~~~~~~~~~~i----~~~l~~~l~~~~~~~~~~~ii~i-----SA~~G~gI~~~~~ 370 (902)
..+++. | .+++|+++||.|....+ .+++. ...+..+++.++- -++.. |+..+.++.+
T Consensus 105 ~~l~~~fg~~~~~~~ivv~T~~d~l~~~--~~~~~~~~~~~~l~~l~~~c~~-----r~~~f~~~~~~~~~~~q~~~--- 174 (196)
T cd01852 105 ETLQELFGEKVLDHTIVLFTRGDDLEGG--TLEDYLENSCEALKRLLEKCGG-----RYVAFNNKAKGEEQEQQVKE--- 174 (196)
T ss_pred HHHHHHhChHhHhcEEEEEECccccCCC--cHHHHHHhccHHHHHHHHHhCC-----eEEEEeCCCCcchhHHHHHH---
Confidence 555553 3 24677999999976422 22222 2345555555442 12222 3555566665
Q ss_pred CcccccccCcccHHHHHHhcCCC
Q psy15197 371 VPALTSWYSGPCLLDVIDNFKTP 393 (902)
Q Consensus 371 ~~~~~~w~~g~~Lle~L~~l~~p 393 (902)
|++.++.+.+.
T Consensus 175 ------------Ll~~i~~~~~~ 185 (196)
T cd01852 175 ------------LLAKVESMVKE 185 (196)
T ss_pred ------------HHHHHHHHHHh
Confidence 77877776553
No 267
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.28 E-value=4e-11 Score=125.94 Aligned_cols=102 Identities=14% Similarity=0.111 Sum_probs=65.3
Q ss_pred CCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHH-HhCCCeEEEEEecCCCCCch
Q psy15197 249 KTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVR-SLGVNQLGVVINKLDTVSWS 327 (902)
Q Consensus 249 ~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~-~~~i~~iIVviNKiDl~~~~ 327 (902)
+...+.++||+|+.+|.......+..+|++|+|+|.++... | ......+..+. .....+++++.||+|+.+..
T Consensus 56 ~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~ 129 (215)
T PTZ00132 56 GPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRIT---Y---KNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQ 129 (215)
T ss_pred eEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhCCCCCEEEEEECccCcccc
Confidence 34689999999999988777777889999999999987622 1 01111222221 11223466889999986411
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 328 QDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 328 ~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
. . .+ ...+.+..+ +.++.+||++|.|+.+
T Consensus 130 ~-~-~~----~~~~~~~~~-----~~~~e~Sa~~~~~v~~ 158 (215)
T PTZ00132 130 V-K-AR----QITFHRKKN-----LQYYDISAKSNYNFEK 158 (215)
T ss_pred C-C-HH----HHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 1 0 11 112223333 3789999999999987
No 268
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.27 E-value=2.8e-11 Score=116.16 Aligned_cols=102 Identities=22% Similarity=0.133 Sum_probs=67.5
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHH-----HHHHHHhCCCeEEEEEecCCCC
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREH-----ALLVRSLGVNQLGVVINKLDTV 324 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~-----l~~l~~~~i~~iIVviNKiDl~ 324 (902)
+..+.++||||+.++.......+..+|++++|+|++.+.. ...... .......+ .++++++||+|+.
T Consensus 44 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-------~~~~~~~~~~~~~~~~~~~-~~~ivv~nk~D~~ 115 (157)
T cd00882 44 KVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDRES-------FENVKEWLLLILINKEGEN-IPIILVGNKIDLP 115 (157)
T ss_pred EEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHH-------HHHHHHHHHHHHHhhccCC-CcEEEEEeccccc
Confidence 5689999999999988888888899999999999998632 111111 11122224 4577999999987
Q ss_pred CchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 325 SWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 325 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
......... ... ..... ...+++++|+.++.|+.+
T Consensus 116 ~~~~~~~~~---~~~-~~~~~----~~~~~~~~s~~~~~~i~~ 150 (157)
T cd00882 116 EERVVSEEE---LAE-QLAKE----LGVPYFETSAKTGENVEE 150 (157)
T ss_pred cccchHHHH---HHH-HHHhh----cCCcEEEEecCCCCChHH
Confidence 532211111 011 11111 235899999999999887
No 269
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.27 E-value=3.9e-11 Score=128.82 Aligned_cols=51 Identities=27% Similarity=0.348 Sum_probs=41.6
Q ss_pred EEeeeEEEEEECCeEEEEEeCCCccc-------hHHHHHHHHHHcCEEEEEEECCCCc
Q psy15197 238 TMDVGQSQFETKTKYITLLDAPGHKD-------FIPNMITGATQADVALLVVDATRGE 288 (902)
Q Consensus 238 Tid~~~~~~~~~~~~i~lIDTPG~~d-------f~~~~~~~l~~aD~aIlVVDa~~g~ 288 (902)
|..+....+++++.+|.|+|+||+.. .-+++++.++.||++++|+|+....
T Consensus 97 Tl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~ 154 (365)
T COG1163 97 TLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDP 154 (365)
T ss_pred ecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCCh
Confidence 44444556899999999999999876 3466888899999999999998653
No 270
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.25 E-value=3.1e-11 Score=120.82 Aligned_cols=100 Identities=13% Similarity=0.068 Sum_probs=60.1
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh---CCCeEEEEEecCCCCCch
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL---GVNQLGVVINKLDTVSWS 327 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~---~i~~iIVviNKiDl~~~~ 327 (902)
..+.|+||+|..+. ..++.+|++++|+|.++... |. .....+..+... ...++++|.||+|+...+
T Consensus 47 ~~l~i~D~~g~~~~-----~~~~~~~~~ilv~d~~~~~s---f~---~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~ 115 (158)
T cd04103 47 HLLLIRDEGGAPDA-----QFASWVDAVIFVFSLENEAS---FQ---TVYNLYHQLSSYRNISEIPLILVGTQDAISESN 115 (158)
T ss_pred EEEEEEECCCCCch-----hHHhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcC
Confidence 56889999999752 34577999999999987622 21 112222233322 123577999999974211
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 328 QDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 328 ~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
..... .++..++.+..+ .++++++||++|.||++
T Consensus 116 ~~~v~--~~~~~~~~~~~~----~~~~~e~SAk~~~~i~~ 149 (158)
T cd04103 116 PRVID--DARARQLCADMK----RCSYYETCATYGLNVER 149 (158)
T ss_pred CcccC--HHHHHHHHHHhC----CCcEEEEecCCCCCHHH
Confidence 11111 111222222221 24789999999999998
No 271
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.23 E-value=3.1e-11 Score=120.13 Aligned_cols=103 Identities=22% Similarity=0.248 Sum_probs=70.1
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh-C-CCeEEEEEecCCCCCch
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL-G-VNQLGVVINKLDTVSWS 327 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~-~-i~~iIVviNKiDl~~~~ 327 (902)
...+.||||+|+.+|.......++.+|++|+|+|.++.. +|+ .....+..+... . ..+++|+.||.|+.+..
T Consensus 47 ~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~---S~~---~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~ 120 (162)
T PF00071_consen 47 PVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEE---SFE---NLKKWLEEIQKYKPEDIPIIVVGNKSDLSDER 120 (162)
T ss_dssp EEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHH---HHH---THHHHHHHHHHHSTTTSEEEEEEETTTGGGGS
T ss_pred ccccccccccccccccccccccccccccccccccccccc---ccc---ccccccccccccccccccceeeeccccccccc
Confidence 357999999999999888888889999999999998752 221 122233333333 2 35788999999987411
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 328 QDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 328 ~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.-.. ++...+.+..+ .+++.+||+++.||.+
T Consensus 121 ~v~~----~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~ 151 (162)
T PF00071_consen 121 EVSV----EEAQEFAKELG-----VPYFEVSAKNGENVKE 151 (162)
T ss_dssp SSCH----HHHHHHHHHTT-----SEEEEEBTTTTTTHHH
T ss_pred cchh----hHHHHHHHHhC-----CEEEEEECCCCCCHHH
Confidence 1111 12333344444 3899999999999998
No 272
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.22 E-value=7.9e-11 Score=120.99 Aligned_cols=107 Identities=21% Similarity=0.219 Sum_probs=64.2
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh-CCCeEEEEEecCCCCCchHH
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL-GVNQLGVVINKLDTVSWSQD 329 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~-~i~~iIVviNKiDl~~~~~~ 329 (902)
..+.++||||+.++.......++.+|++|+|+|.+.... |. ......+..+... ...++|+|.||+|+.+....
T Consensus 49 ~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s---~~--~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~ 123 (187)
T cd04129 49 VQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDS---LE--NVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVA 123 (187)
T ss_pred EEEEEEECCCChhccccchhhcCCCCEEEEEEECCCHHH---HH--HHHHHHHHHHHHhCCCCCEEEEeeChhhhhCccc
Confidence 467899999998876555456788999999999976421 11 0001122223222 22457899999998531100
Q ss_pred -------HHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 330 -------RFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 330 -------~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+... .++...+.+..+. .+++.+||++|.|+++
T Consensus 124 ~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~e~Sa~~~~~v~~ 163 (187)
T cd04129 124 KEEYRTQRFVP-IQQGKRVAKEIGA----KKYMECSALTGEGVDD 163 (187)
T ss_pred ccccccCCcCC-HHHHHHHHHHhCC----cEEEEccCCCCCCHHH
Confidence 0000 1122233344443 3789999999999998
No 273
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=99.21 E-value=7.7e-11 Score=104.68 Aligned_cols=81 Identities=27% Similarity=0.406 Sum_probs=75.7
Q ss_pred ceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCcEEEEEEEEEceEeeeeeccCCeEEEeeeccccccceeecc
Q psy15197 401 LRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYVDEMSVSAAYAGDNVSVTLLNYDQQNVSVGFL 480 (902)
Q Consensus 401 l~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~~~~~v~~a~aGdiv~I~l~~~~~~~i~kG~v 480 (902)
|||+|.++|+.++.|+.++|+|.+|.|++||++.+.|.+...+|++|++++.+++.|.|||.++|.+. ...++++|++
T Consensus 1 lr~~V~dv~k~~~~~~~v~Gkv~~G~v~~Gd~v~~~P~~~~~~V~si~~~~~~~~~a~aGd~v~l~l~--~~~~i~~G~v 78 (81)
T cd03695 1 FRFPVQYVIRPNADFRGYAGTIASGSIRVGDEVVVLPSGKTSRVKSIETFDGELDEAGAGESVTLTLE--DEIDVSRGDV 78 (81)
T ss_pred CEeeEEEEEeeCCCcEEEEEEEccceEECCCEEEEcCCCCeEEEEEEEECCcEeCEEcCCCEEEEEEC--CccccCCCCE
Confidence 68999999998888889999999999999999999999999999999999999999999999999997 3678999999
Q ss_pred ccC
Q psy15197 481 LSE 483 (902)
Q Consensus 481 L~~ 483 (902)
|+.
T Consensus 79 l~~ 81 (81)
T cd03695 79 IVA 81 (81)
T ss_pred EeC
Confidence 873
No 274
>KOG0098|consensus
Probab=99.21 E-value=4.6e-11 Score=118.62 Aligned_cols=105 Identities=24% Similarity=0.231 Sum_probs=74.3
Q ss_pred CCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCC--eEEEEEecCCCCCc
Q psy15197 249 KTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVN--QLGVVINKLDTVSW 326 (902)
Q Consensus 249 ~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~--~iIVviNKiDl~~~ 326 (902)
+..++++|||+|++.|..-+.++++.+.++|||.|.+... +|+ ....++.-+++...+ .++++.||+||...
T Consensus 53 k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~---sF~---hL~~wL~D~rq~~~~NmvImLiGNKsDL~~r 126 (216)
T KOG0098|consen 53 KQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRE---SFN---HLTSWLEDARQHSNENMVIMLIGNKSDLEAR 126 (216)
T ss_pred ceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccchh---hHH---HHHHHHHHHHHhcCCCcEEEEEcchhhhhcc
Confidence 3457899999999999999999999999999999998752 232 222233334444222 35567899999642
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCC
Q psy15197 327 SQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 368 (902)
Q Consensus 327 ~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~ 368 (902)
. +--.++-+.+.++.|+ .+..+||+++.|+++.
T Consensus 127 R----~Vs~EEGeaFA~ehgL-----ifmETSakt~~~VEEa 159 (216)
T KOG0098|consen 127 R----EVSKEEGEAFAREHGL-----IFMETSAKTAENVEEA 159 (216)
T ss_pred c----cccHHHHHHHHHHcCc-----eeehhhhhhhhhHHHH
Confidence 1 1122345556666666 7889999999999983
No 275
>KOG0080|consensus
Probab=99.20 E-value=5.7e-11 Score=114.87 Aligned_cols=115 Identities=22% Similarity=0.216 Sum_probs=73.1
Q ss_pred CeEEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHH-HHHHHh----C
Q psy15197 236 GITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHA-LLVRSL----G 310 (902)
Q Consensus 236 GiTid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l-~~l~~~----~ 310 (902)
|+...+....+..+..++.||||+|+++|...+-++++.|.++|+|.|.+...+ |. ...++ ..+... +
T Consensus 45 GvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdt---f~----kLd~W~~Eld~Ystn~d 117 (209)
T KOG0080|consen 45 GVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDT---FV----KLDIWLKELDLYSTNPD 117 (209)
T ss_pred eeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccchhh---HH----hHHHHHHHHHhhcCCcc
Confidence 444444444444556789999999999999999999999999999999987522 11 11111 111111 2
Q ss_pred CCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 311 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 311 i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+-.+ +|.||+|..+. + .--.++=.++.+... +-|+.+||++.+|+..
T Consensus 118 iikm-lVgNKiDkes~---R-~V~reEG~kfAr~h~-----~LFiE~SAkt~~~V~~ 164 (209)
T KOG0080|consen 118 IIKM-LVGNKIDKESE---R-VVDREEGLKFARKHR-----CLFIECSAKTRENVQC 164 (209)
T ss_pred HhHh-hhcccccchhc---c-cccHHHHHHHHHhhC-----cEEEEcchhhhccHHH
Confidence 3323 78999996421 1 001122223344433 3689999999999987
No 276
>KOG1489|consensus
Probab=99.20 E-value=1e-10 Score=125.17 Aligned_cols=108 Identities=21% Similarity=0.206 Sum_probs=62.6
Q ss_pred EEECCe-EEEEEeCCCccc-------hHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHH----HhCCCe
Q psy15197 246 FETKTK-YITLLDAPGHKD-------FIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVR----SLGVNQ 313 (902)
Q Consensus 246 ~~~~~~-~i~lIDTPG~~d-------f~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~----~~~i~~ 313 (902)
+.++++ ++++-|.||+.+ .--.-++-+..|+..++|||.+.+-. .+.-.+....+..+. .+..++
T Consensus 238 v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~---~~p~~~~~lL~~ELe~yek~L~~rp 314 (366)
T KOG1489|consen 238 VNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQL---RNPWQQLQLLIEELELYEKGLADRP 314 (366)
T ss_pred eeccccceeEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCccc---CCHHHHHHHHHHHHHHHhhhhccCc
Confidence 344454 499999999875 22223344566899999999986511 000012222222222 223455
Q ss_pred EEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 314 LGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 314 iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.+||+||+|+.+... ..++++...+. - ..++++||++++|+.+
T Consensus 315 ~liVaNKiD~~eae~----~~l~~L~~~lq---~----~~V~pvsA~~~egl~~ 357 (366)
T KOG1489|consen 315 ALIVANKIDLPEAEK----NLLSSLAKRLQ---N----PHVVPVSAKSGEGLEE 357 (366)
T ss_pred eEEEEeccCchhHHH----HHHHHHHHHcC---C----CcEEEeeeccccchHH
Confidence 779999999864222 22233322222 1 1489999999999888
No 277
>KOG0394|consensus
Probab=99.19 E-value=3.4e-11 Score=119.31 Aligned_cols=107 Identities=21% Similarity=0.235 Sum_probs=69.5
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhH-HHHHHHHHh---CCCeEEEEEecCCCCCc
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTR-EHALLVRSL---GVNQLGVVINKLDTVSW 326 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~-~~l~~l~~~---~i~~iIVviNKiDl~~~ 326 (902)
..+.||||+|+++|-..-...++.||+++||.|.+.. .+|+--...+ +.+..+... .. |+||+.||+|+.+.
T Consensus 58 vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~---~Sfe~L~~Wr~EFl~qa~~~~Pe~F-PFVilGNKiD~~~~ 133 (210)
T KOG0394|consen 58 VTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNP---KSFENLENWRKEFLIQASPQDPETF-PFVILGNKIDVDGG 133 (210)
T ss_pred EEEEEEecccHHHhhhcccceecCCceEEEEeecCCh---hhhccHHHHHHHHHHhcCCCCCCcc-cEEEEcccccCCCC
Confidence 4678999999999999888889999999999998865 2232211222 222222211 22 47899999998541
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 327 SQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 327 ~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
. .+ ..-.++.....+.. .++|++.+|||.+.|+..
T Consensus 134 ~-~r-~VS~~~Aq~WC~s~----gnipyfEtSAK~~~NV~~ 168 (210)
T KOG0394|consen 134 K-SR-QVSEKKAQTWCKSK----GNIPYFETSAKEATNVDE 168 (210)
T ss_pred c-cc-eeeHHHHHHHHHhc----CCceeEEecccccccHHH
Confidence 1 11 11112233333332 367999999999999987
No 278
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.18 E-value=1.4e-10 Score=120.39 Aligned_cols=105 Identities=19% Similarity=0.062 Sum_probs=64.6
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhH-HHHHHHHHh-CCCeEEEEEecCCCCCch
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTR-EHALLVRSL-GVNQLGVVINKLDTVSWS 327 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~-~~l~~l~~~-~i~~iIVviNKiDl~~~~ 327 (902)
...+.||||||.++.. ....++.+|++|+|+|.++... |+ ... ..+..+... ...++|+|.||+|+.+..
T Consensus 65 ~v~l~iwDTaG~~~~~--~~~~~~~ad~iilv~d~t~~~S---f~---~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~ 136 (195)
T cd01873 65 SVSLRLWDTFGDHDKD--RRFAYGRSDVVLLCFSIASPNS---LR---NVKTMWYPEIRHFCPRVPVILVGCKLDLRYAD 136 (195)
T ss_pred EEEEEEEeCCCChhhh--hcccCCCCCEEEEEEECCChhH---HH---HHHHHHHHHHHHhCCCCCEEEEEEchhccccc
Confidence 4679999999997642 3346789999999999987521 11 111 122223322 223577999999986311
Q ss_pred HHH---------------HHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 328 QDR---------------FQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 328 ~~~---------------~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
... ..-..++...+.+..++ +++.+||++|.||++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~-----~~~E~SAkt~~~V~e 186 (195)
T cd01873 137 LDEVNRARRPLARPIKNADILPPETGRAVAKELGI-----PYYETSVVTQFGVKD 186 (195)
T ss_pred cchhhhcccccccccccCCccCHHHHHHHHHHhCC-----EEEEcCCCCCCCHHH
Confidence 000 00011233444455543 899999999999998
No 279
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.17 E-value=2.2e-10 Score=119.03 Aligned_cols=105 Identities=18% Similarity=0.152 Sum_probs=61.9
Q ss_pred eEEEEEeCCCccchHHHHH-----HHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCC
Q psy15197 251 KYITLLDAPGHKDFIPNMI-----TGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVS 325 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~-----~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~ 325 (902)
..+.+|||||..+...... ..+..+|++|+|.|.. .. ......+..+...+.+ +++|+||+|+..
T Consensus 52 ~~l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~~~--~~-------~~d~~~~~~l~~~~~~-~ilV~nK~D~~~ 121 (197)
T cd04104 52 PNVTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISSTR--FS-------SNDVKLAKAIQCMGKK-FYFVRTKVDRDL 121 (197)
T ss_pred CCceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeCCC--CC-------HHHHHHHHHHHHhCCC-EEEEEecccchh
Confidence 3689999999864211111 1245689888875432 11 3455566677777654 779999999843
Q ss_pred chH-----------HHHHHHHHHHHHhhhhcCCCCCCceEecCCCc--cCCCCCC
Q psy15197 326 WSQ-----------DRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGL--TGENLTT 367 (902)
Q Consensus 326 ~~~-----------~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~--~G~gI~~ 367 (902)
.+. ..++++.+.+...++..+. ..-+++.+|+. .+.++..
T Consensus 122 ~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~--~~p~v~~vS~~~~~~~~~~~ 174 (197)
T cd04104 122 SNEQRSKPRSFNREQVLQEIRDNCLENLQEAGV--SEPPVFLVSNFDPSDYDFPK 174 (197)
T ss_pred hhhhccccccccHHHHHHHHHHHHHHHHHHcCC--CCCCEEEEeCCChhhcChHH
Confidence 211 1233334444444443332 22378999998 4566665
No 280
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.15 E-value=3.8e-10 Score=117.88 Aligned_cols=71 Identities=20% Similarity=0.251 Sum_probs=49.9
Q ss_pred CCeEEEEEeCCCccchHHHHHHHHHHc-CEEEEEEECCCCccccccCCchhhHHHH-HHHH---H--hCCCeEEEEEecC
Q psy15197 249 KTKYITLLDAPGHKDFIPNMITGATQA-DVALLVVDATRGEFETGFESGGQTREHA-LLVR---S--LGVNQLGVVINKL 321 (902)
Q Consensus 249 ~~~~i~lIDTPG~~df~~~~~~~l~~a-D~aIlVVDa~~g~~E~~~~~~~qt~~~l-~~l~---~--~~i~~iIVviNKi 321 (902)
.+..+.|||||||.++.......++.+ +++|+|+|++.... ......+.+ .++. . .++ +++|++||+
T Consensus 46 ~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~-----~~~~~~~~l~~il~~~~~~~~~~-pvliv~NK~ 119 (203)
T cd04105 46 KGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQK-----NLKDVAEFLYDILTDLEKVKNKI-PVLIACNKQ 119 (203)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchh-----HHHHHHHHHHHHHHHHhhccCCC-CEEEEecch
Confidence 356899999999999999889999998 99999999987510 001122222 1111 1 244 577999999
Q ss_pred CCCC
Q psy15197 322 DTVS 325 (902)
Q Consensus 322 Dl~~ 325 (902)
|+..
T Consensus 120 Dl~~ 123 (203)
T cd04105 120 DLFT 123 (203)
T ss_pred hhcc
Confidence 9865
No 281
>KOG0087|consensus
Probab=99.14 E-value=2e-10 Score=116.62 Aligned_cols=106 Identities=24% Similarity=0.246 Sum_probs=70.1
Q ss_pred EEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh---CCCeEEEEEecCC
Q psy15197 246 FETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL---GVNQLGVVINKLD 322 (902)
Q Consensus 246 ~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~---~i~~iIVviNKiD 322 (902)
+..+-.+..||||+|+++|..-+-.+.+.|-+++||.|.+...+ |+ ...+.+..++.. ++. +++|.||+|
T Consensus 58 vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~T---fe---nv~rWL~ELRdhad~niv-imLvGNK~D 130 (222)
T KOG0087|consen 58 VDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQT---FE---NVERWLKELRDHADSNIV-IMLVGNKSD 130 (222)
T ss_pred ecCcEEEEeeecccchhhhccccchhhcccceeEEEEechhHHH---HH---HHHHHHHHHHhcCCCCeE-EEEeecchh
Confidence 33344578999999999999999999999999999999987622 10 122223333333 333 567899999
Q ss_pred CCCchHHHHHHHH-HHHHHhhhhcCCCCCCceEecCCCccCCCCCCC
Q psy15197 323 TVSWSQDRFQEIV-TKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 368 (902)
Q Consensus 323 l~~~~~~~~~~i~-~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~ 368 (902)
|... ..+. ++-..+.+..+. .++.+||+.+.|+++.
T Consensus 131 L~~l-----raV~te~~k~~Ae~~~l-----~f~EtSAl~~tNVe~a 167 (222)
T KOG0087|consen 131 LNHL-----RAVPTEDGKAFAEKEGL-----FFLETSALDATNVEKA 167 (222)
T ss_pred hhhc-----cccchhhhHhHHHhcCc-----eEEEecccccccHHHH
Confidence 8531 1111 122222333333 7899999999999984
No 282
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.11 E-value=6.9e-09 Score=113.47 Aligned_cols=107 Identities=17% Similarity=0.213 Sum_probs=66.0
Q ss_pred EEeeeEEEEEECC--eEEEEEeCCCccchHH---------------------HHHHHHH-------HcCEEEEEEECCCC
Q psy15197 238 TMDVGQSQFETKT--KYITLLDAPGHKDFIP---------------------NMITGAT-------QADVALLVVDATRG 287 (902)
Q Consensus 238 Tid~~~~~~~~~~--~~i~lIDTPG~~df~~---------------------~~~~~l~-------~aD~aIlVVDa~~g 287 (902)
++......++.++ ..++||||||+.++.. ......+ .+|++|++++++..
T Consensus 48 ~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~ 127 (276)
T cd01850 48 EIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH 127 (276)
T ss_pred EEEEEEEEEEECCEEEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC
Confidence 3444445555555 4799999999866322 1111111 37899999998752
Q ss_pred ccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCC
Q psy15197 288 EFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSG 359 (902)
Q Consensus 288 ~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA 359 (902)
. +...+.+.++.+.. +++ +|+|+||+|+.. ..++....+.+.+.++..+. +++..+.
T Consensus 128 ~------l~~~D~~~lk~l~~-~v~-vi~VinK~D~l~--~~e~~~~k~~i~~~l~~~~i-----~~~~~~~ 184 (276)
T cd01850 128 G------LKPLDIEFMKRLSK-RVN-IIPVIAKADTLT--PEELKEFKQRIMEDIEEHNI-----KIYKFPE 184 (276)
T ss_pred C------CCHHHHHHHHHHhc-cCC-EEEEEECCCcCC--HHHHHHHHHHHHHHHHHcCC-----ceECCCC
Confidence 1 22345666666654 555 779999999975 34455566667777776654 5665543
No 283
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.11 E-value=1.6e-09 Score=113.12 Aligned_cols=107 Identities=20% Similarity=0.145 Sum_probs=66.0
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh--------------------
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL-------------------- 309 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~-------------------- 309 (902)
.+.+.||||+|.++|.......++.+|++|+|+|.++... |+ .....+..+...
T Consensus 53 ~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~S---f~---~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~ 126 (202)
T cd04102 53 TFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKS---SQ---NLQRWSLEALNKDTFPTGLLVTNGDYDSEQFG 126 (202)
T ss_pred EEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHH---HH---HHHHHHHHHHHhhccccccccccccccccccC
Confidence 3578999999999998888889999999999999988622 11 111222222211
Q ss_pred -CCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 310 -GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 310 -~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.-.|+|+|.||+|+.+......+........+.++++. |.+.+++.....+-.
T Consensus 127 ~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia~~~~~-----~~i~~~c~~~~~~~~ 180 (202)
T cd04102 127 GNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVAEQGNA-----EEINLNCTNGRLLAA 180 (202)
T ss_pred CCCceEEEEEECccchhhcccchHHHhhHhhhHHHhcCC-----ceEEEecCCcccccC
Confidence 11357899999998642111111122222233444554 667778877665554
No 284
>KOG0075|consensus
Probab=99.11 E-value=4.7e-10 Score=107.21 Aligned_cols=116 Identities=17% Similarity=0.138 Sum_probs=77.7
Q ss_pred eeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHH---hCCCeEEE
Q psy15197 240 DVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRS---LGVNQLGV 316 (902)
Q Consensus 240 d~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~---~~i~~iIV 316 (902)
......+.-++..+.++|.||++.|...+.++.+.++++++||||.+... +...-.|.-.++.. .++| ++|
T Consensus 54 Gfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k-----~~~sr~EL~~LL~k~~l~gip-~LV 127 (186)
T KOG0075|consen 54 GFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDK-----LEASRSELHDLLDKPSLTGIP-LLV 127 (186)
T ss_pred cceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCccc-----chhhHHHHHHHhcchhhcCCc-EEE
Confidence 33344455567889999999999999999999999999999999987521 11222222223222 2555 669
Q ss_pred EEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 317 VINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 317 viNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+.||.|+.++- .-..+.+++ ........++..+.||++...||+.
T Consensus 128 LGnK~d~~~AL--~~~~li~rm----gL~sitdREvcC~siScke~~Nid~ 172 (186)
T KOG0075|consen 128 LGNKIDLPGAL--SKIALIERM----GLSSITDREVCCFSISCKEKVNIDI 172 (186)
T ss_pred ecccccCcccc--cHHHHHHHh----CccccccceEEEEEEEEcCCccHHH
Confidence 99999997621 112222222 1122334567788999999999987
No 285
>KOG0086|consensus
Probab=99.10 E-value=3.3e-10 Score=108.64 Aligned_cols=104 Identities=25% Similarity=0.284 Sum_probs=68.1
Q ss_pred CCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCe--EEEEEecCCCCCc
Q psy15197 249 KTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQ--LGVVINKLDTVSW 326 (902)
Q Consensus 249 ~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~--iIVviNKiDl~~~ 326 (902)
+..++.||||+|+++|..-+.++++.|-+++||.|++... +|+ .....+.-++.+.-+. +|++.||.|+-..
T Consensus 56 K~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~Tsrd---sfn---aLtnWL~DaR~lAs~nIvviL~GnKkDL~~~ 129 (214)
T KOG0086|consen 56 KTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRD---SFN---ALTNWLTDARTLASPNIVVILCGNKKDLDPE 129 (214)
T ss_pred cEEEEEEeecccHHHHHHHHHHHhccccceEEEEeccchh---hHH---HHHHHHHHHHhhCCCcEEEEEeCChhhcChh
Confidence 4458999999999999999999999999999999998652 111 1111222233333232 4456799998642
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 327 SQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 327 ~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.+..+. +...+..+ ..+.+...||++|+|+++
T Consensus 130 R~Vtfl----EAs~FaqE-----nel~flETSa~TGeNVEE 161 (214)
T KOG0086|consen 130 REVTFL----EASRFAQE-----NELMFLETSALTGENVEE 161 (214)
T ss_pred hhhhHH----HHHhhhcc-----cceeeeeecccccccHHH
Confidence 222222 22222222 223678999999999998
No 286
>KOG0093|consensus
Probab=99.09 E-value=2.4e-10 Score=109.12 Aligned_cols=106 Identities=21% Similarity=0.119 Sum_probs=74.7
Q ss_pred CCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchH
Q psy15197 249 KTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQ 328 (902)
Q Consensus 249 ~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~ 328 (902)
+...+.+|||+|++.+...+..+++.|+++||+.|.+... +|.........+......+.+ +|+|.||||+-+.
T Consensus 68 kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDitNee---Sf~svqdw~tqIktysw~naq-vilvgnKCDmd~e-- 141 (193)
T KOG0093|consen 68 KRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEE---SFNSVQDWITQIKTYSWDNAQ-VILVGNKCDMDSE-- 141 (193)
T ss_pred cEEEEEEEecccchhhhHHHHHHhhccceEEEEEecCCHH---HHHHHHHHHHHheeeeccCce-EEEEecccCCccc--
Confidence 4468999999999999999999999999999999998762 232222222223223334554 7799999998642
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 329 DRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 329 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+. --.+....+..++|+ .++..||+.+.|+..
T Consensus 142 -Rv-is~e~g~~l~~~LGf-----efFEtSaK~NinVk~ 173 (193)
T KOG0093|consen 142 -RV-ISHERGRQLADQLGF-----EFFETSAKENINVKQ 173 (193)
T ss_pred -ee-eeHHHHHHHHHHhCh-----HHhhhcccccccHHH
Confidence 11 112334455566777 689999999999887
No 287
>KOG0070|consensus
Probab=99.09 E-value=2.2e-10 Score=114.49 Aligned_cols=118 Identities=19% Similarity=0.191 Sum_probs=82.9
Q ss_pred EEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHH-HHHHHHH--hCCCeE
Q psy15197 238 TMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTRE-HALLVRS--LGVNQL 314 (902)
Q Consensus 238 Tid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~-~l~~l~~--~~i~~i 314 (902)
|+......+++++..+++||..|+.++...+..+....+++|+|||+++... + ...++ ...++.. ++.-++
T Consensus 48 TiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~R-----i-~eak~eL~~~l~~~~l~~~~l 121 (181)
T KOG0070|consen 48 TIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRER-----I-EEAKEELHRMLAEPELRNAPL 121 (181)
T ss_pred ccccceeEEEEcceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHH-----H-HHHHHHHHHHHcCcccCCceE
Confidence 5566667788899999999999999999999999999999999999987521 1 11222 2222222 234467
Q ss_pred EEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 315 GVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 315 IVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+|+.||.|+.+.-. ..++.+.+....+.....-+..++|.+|+|+.+
T Consensus 122 lv~aNKqD~~~als------~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~e 168 (181)
T KOG0070|consen 122 LVFANKQDLPGALS------AAEITNKLGLHSLRSRNWHIQSTCAISGEGLYE 168 (181)
T ss_pred EEEechhhccccCC------HHHHHhHhhhhccCCCCcEEeeccccccccHHH
Confidence 79999999875211 122333333334444566788999999999887
No 288
>PF06628 Catalase-rel: Catalase-related immune-responsive; InterPro: IPR010582 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen, serving to protect cells from its toxic effects []. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. Most catalases are mono-functional, haem-containing enzymes, although there are also bifunctional haem-containing peroxidase/catalases (IPR000763 from INTERPRO) that are closely related to plant peroxidases, and non-haem, manganese-containing catalases (IPR007760 from INTERPRO) that are found in bacteria []. This entry represents a small conserved region within catalase enzymes that carries the immune-responsive amphipathic octa-peptide that is recognised by T cells [].; PDB: 2CAH_A 1NM0_A 1H7K_A 1E93_A 1H6N_A 3HB6_A 2CAG_A 1M85_A 1MQF_A 1A4E_C ....
Probab=99.02 E-value=1.3e-10 Score=99.64 Aligned_cols=46 Identities=43% Similarity=0.620 Sum_probs=41.1
Q ss_pred eeccCCCCCccchHHHHhhcCCHHHHHHHHHHHHHHhcCCChh-hhcC
Q psy15197 856 RYKTEDEDNFSQPRILWSNVLDDAARDRMTTNIASVLKLAAPF-IQIL 902 (902)
Q Consensus 856 ~~~~~~~ddf~Q~~~~~~~~~~~~ek~~li~n~~~~l~~~~~~-I~~~ 902 (902)
|+.+.++|||+|||.||+ +|++.||++||+||+++|++|+++ ||+|
T Consensus 1 R~~~~~~ddf~Qa~~ly~-~l~~~er~~lv~nia~~l~~v~~~~i~~r 47 (68)
T PF06628_consen 1 RYRSEKDDDFSQARDLYR-VLSDEERERLVENIAGHLSGVSDEEIQER 47 (68)
T ss_dssp EHGHGGGCSSHHHHHHHH-HSSHHHHHHHHHHHHHHHTTSSHHHHHHH
T ss_pred CCCCCCCcchhhHHHHHH-HCCHHHHHHHHHHHHHHHccCChhhHHHH
Confidence 344556699999999999 999999999999999999999988 9875
No 289
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.01 E-value=6e-09 Score=115.81 Aligned_cols=37 Identities=24% Similarity=0.288 Sum_probs=29.0
Q ss_pred CeEEEEEeCCCcc----chH---HHHHHHHHHcCEEEEEEECCC
Q psy15197 250 TKYITLLDAPGHK----DFI---PNMITGATQADVALLVVDATR 286 (902)
Q Consensus 250 ~~~i~lIDTPG~~----df~---~~~~~~l~~aD~aIlVVDa~~ 286 (902)
...+.|+||||+. ++. ...+..++.||++++|||++.
T Consensus 68 ~v~i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 68 YVPVELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred cceEEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 3579999999983 332 345667899999999999974
No 290
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.00 E-value=8e-09 Score=109.41 Aligned_cols=106 Identities=20% Similarity=0.297 Sum_probs=71.6
Q ss_pred CCeEEEEEeCCCccc-------hHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCC-CeEEEEEec
Q psy15197 249 KTKYITLLDAPGHKD-------FIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGV-NQLGVVINK 320 (902)
Q Consensus 249 ~~~~i~lIDTPG~~d-------f~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i-~~iIVviNK 320 (902)
.+..++||||||..+ +.......+...|++++++|+.+.-. ..+...+..+...+. .++|++||.
T Consensus 85 ~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL-------~~d~~f~~dVi~~~~~~~~i~~VtQ 157 (296)
T COG3596 85 DGENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRAL-------GTDEDFLRDVIILGLDKRVLFVVTQ 157 (296)
T ss_pred cccceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccc-------cCCHHHHHHHHHhccCceeEEEEeh
Confidence 467899999999987 67778888899999999999987632 234444544444444 678899999
Q ss_pred CCCCC----chH------HHHHHH----HHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 321 LDTVS----WSQ------DRFQEI----VTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 321 iDl~~----~~~------~~~~~i----~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+|... |+. ..+++. .+.+..++.. --|++..|+..+.|+.+
T Consensus 158 ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~------V~pV~~~~~r~~wgl~~ 212 (296)
T COG3596 158 ADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQE------VKPVVAVSGRLPWGLKE 212 (296)
T ss_pred hhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHhh------cCCeEEeccccCccHHH
Confidence 99642 221 112222 2223333332 23889999999999988
No 291
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.00 E-value=7.4e-09 Score=115.29 Aligned_cols=102 Identities=18% Similarity=0.144 Sum_probs=62.3
Q ss_pred CCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchH
Q psy15197 249 KTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQ 328 (902)
Q Consensus 249 ~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~ 328 (902)
.++.+.||||+|...-. ......||++|+|++...| .....+.. -.+.+.. |+|+||+|+.+.
T Consensus 147 ~g~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p~~g----------d~iq~~k~-gi~E~aD-IiVVNKaDl~~~-- 209 (332)
T PRK09435 147 AGYDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGAG----------DELQGIKK-GIMELAD-LIVINKADGDNK-- 209 (332)
T ss_pred cCCCEEEEECCCCccch---hHHHHhCCEEEEEecCCch----------HHHHHHHh-hhhhhhh-eEEeehhcccch--
Confidence 47889999999988432 2246789999999874433 11111111 0111122 589999998752
Q ss_pred HHHHHHHHHHHHhhhhcCCC--CCCceEecCCCccCCCCCC
Q psy15197 329 DRFQEIVTKLGAFLKQAGFR--DSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 329 ~~~~~i~~~l~~~l~~~~~~--~~~~~ii~iSA~~G~gI~~ 367 (902)
........++...+....-. .-..|++++||++|.||++
T Consensus 210 ~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIde 250 (332)
T PRK09435 210 TAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDE 250 (332)
T ss_pred hHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHH
Confidence 22344445555555432200 0124899999999999999
No 292
>KOG0095|consensus
Probab=98.99 E-value=3.9e-09 Score=100.91 Aligned_cols=113 Identities=15% Similarity=0.101 Sum_probs=71.1
Q ss_pred eEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecC
Q psy15197 242 GQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKL 321 (902)
Q Consensus 242 ~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKi 321 (902)
....+.....++.||||+|+++|...+.++.+.|+++|||.|.+-.+ +|.--+.+...+..-...++- -|+|.||+
T Consensus 47 ktvev~gekiklqiwdtagqerfrsitqsyyrsahalilvydiscqp---sfdclpewlreie~yan~kvl-kilvgnk~ 122 (213)
T KOG0095|consen 47 KTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQP---SFDCLPEWLREIEQYANNKVL-KILVGNKI 122 (213)
T ss_pred EEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccCc---chhhhHHHHHHHHHHhhcceE-EEeecccc
Confidence 33344445568999999999999999999999999999999987442 222222222222221222322 25889999
Q ss_pred CCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 322 DTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 322 Dl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
|+.+.. +--+++-+++.+. .. .-++..||+..+|++.
T Consensus 123 d~~drr-evp~qigeefs~~----qd----myfletsakea~nve~ 159 (213)
T KOG0095|consen 123 DLADRR-EVPQQIGEEFSEA----QD----MYFLETSAKEADNVEK 159 (213)
T ss_pred chhhhh-hhhHHHHHHHHHh----hh----hhhhhhcccchhhHHH
Confidence 987521 1122333333221 11 1368899999999998
No 293
>PLN00023 GTP-binding protein; Provisional
Probab=98.98 E-value=4.4e-09 Score=115.74 Aligned_cols=70 Identities=20% Similarity=0.170 Sum_probs=50.3
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhC--------------CCeEE
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLG--------------VNQLG 315 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~--------------i~~iI 315 (902)
...+.||||+|+++|...+...++.+|++|+|+|.++... |+ .....+..+...+ ..++|
T Consensus 82 ~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~S---Fe---nL~kWl~eI~~~~~~s~p~~s~~~~~~~ipII 155 (334)
T PLN00023 82 DFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRT---KT---SLQKWASEVAATGTFSAPLGSGGPGGLPVPYI 155 (334)
T ss_pred eEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHH---HH---HHHHHHHHHHHhcccccccccccccCCCCcEE
Confidence 3579999999999999988889999999999999987521 11 1222333333321 13477
Q ss_pred EEEecCCCCC
Q psy15197 316 VVINKLDTVS 325 (902)
Q Consensus 316 VviNKiDl~~ 325 (902)
||.||+|+..
T Consensus 156 LVGNK~DL~~ 165 (334)
T PLN00023 156 VIGNKADIAP 165 (334)
T ss_pred EEEECccccc
Confidence 9999999964
No 294
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.98 E-value=5e-08 Score=105.04 Aligned_cols=81 Identities=15% Similarity=0.109 Sum_probs=48.7
Q ss_pred EEeeeEEEEEECCeEEEEEeCCCccchH------HH----HHHHHH--HcCEEEEEEECCCCccccccCCchhhHHHHHH
Q psy15197 238 TMDVGQSQFETKTKYITLLDAPGHKDFI------PN----MITGAT--QADVALLVVDATRGEFETGFESGGQTREHALL 305 (902)
Q Consensus 238 Tid~~~~~~~~~~~~i~lIDTPG~~df~------~~----~~~~l~--~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~ 305 (902)
|.........+++..++||||||+.+.. .. +...+. ..|++++|...+... ....+...+..
T Consensus 66 T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r------~~~~d~~llk~ 139 (249)
T cd01853 66 TLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYR------RDYLDLPLLRA 139 (249)
T ss_pred eEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCC------CCHHHHHHHHH
Confidence 4444445566788999999999998752 11 122222 478888886554321 11233444444
Q ss_pred HHH-hCC---CeEEEEEecCCCC
Q psy15197 306 VRS-LGV---NQLGVVINKLDTV 324 (902)
Q Consensus 306 l~~-~~i---~~iIVviNKiDl~ 324 (902)
+.. .|. .++|||+||+|..
T Consensus 140 I~e~fG~~i~~~~ivV~T~~d~~ 162 (249)
T cd01853 140 ITDSFGPSIWRNAIVVLTHAASS 162 (249)
T ss_pred HHHHhChhhHhCEEEEEeCCccC
Confidence 443 331 3588999999975
No 295
>KOG0047|consensus
Probab=98.97 E-value=2.4e-10 Score=124.56 Aligned_cols=107 Identities=45% Similarity=0.728 Sum_probs=97.0
Q ss_pred CCccccCCCCCCCCccccccccCCCCCCCCcchhhhhccccccCCCCccchhcccCCCCccccccchhhhccCCCCCCCC
Q psy15197 89 EIPVDTTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFEDRETIIKTIGPHGPVP 168 (902)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (902)
.....||.+|.|+.+++...++++.||++++|..++|.|-||++|+||||+||++|+||+|||+.+..+-+
T Consensus 20 ~~~v~Tt~~G~Pi~~~~a~~tvG~rGPiLlQD~~lld~~ahFDRERIPERVvHAkGagA~GyFEvThDIt~--------- 90 (505)
T KOG0047|consen 20 QPPVITTSNGAPIGNKTASQTVGPRGPILLQDYHLLDEMAHFDRERIPERVVHAKGAGAFGYFEVTHDITK--------- 90 (505)
T ss_pred CCceEEcCCCCcccCCcceeecCCCCCeeeehhHHHHHHhhcchhcCchhhhccccCcceeEEEeechHHH---------
Confidence 45678999999999999999999999999999999999999999999999999999999999999887744
Q ss_pred CcccccccccccccCCCCcccccccCCCCccccceecccC
Q psy15197 169 LEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEVRKLP 208 (902)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (902)
|.-...|...|.+.|--++-+-++|+.|..+..+++
T Consensus 91 ----~~~a~~f~kvgk~Tp~~vRFSTV~gE~GSaDT~RDP 126 (505)
T KOG0047|consen 91 ----YCKADIFSKVGKQTPVLVRFSTVGGESGSADTARDP 126 (505)
T ss_pred ----HHHHHHHhhccccCceEEEEEeecccCCCcccccCC
Confidence 677788899999999999999999999977755443
No 296
>KOG0076|consensus
Probab=98.96 E-value=2.9e-09 Score=104.89 Aligned_cols=121 Identities=22% Similarity=0.179 Sum_probs=80.7
Q ss_pred EEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHH-HHHHHHHhCCCeEEE
Q psy15197 238 TMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTRE-HALLVRSLGVNQLGV 316 (902)
Q Consensus 238 Tid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~-~l~~l~~~~i~~iIV 316 (902)
|+.+....+...+..+.|||.-|+......+..++..|+++|+||||++... |+......+ .+..=...|+| +++
T Consensus 56 tvgLnig~i~v~~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR---~~~~~t~~~~v~~~E~leg~p-~L~ 131 (197)
T KOG0076|consen 56 TVGLNIGTIEVCNAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRER---FEESKTAFEKVVENEKLEGAP-VLV 131 (197)
T ss_pred ccceeecceeeccceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHH---HHHHHHHHHHHHHHHHhcCCc-hhh
Confidence 5556666677778899999999999999999999999999999999997421 111122222 22222224666 558
Q ss_pred EEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 317 VINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 317 viNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.+||.|+.+. ....++...+.. .+..+ ....++.||||++|+||.+
T Consensus 132 lankqd~q~~--~~~~El~~~~~~-~e~~~--~rd~~~~pvSal~gegv~e 177 (197)
T KOG0076|consen 132 LANKQDLQNA--MEAAELDGVFGL-AELIP--RRDNPFQPVSALTGEGVKE 177 (197)
T ss_pred hcchhhhhhh--hhHHHHHHHhhh-hhhcC--CccCccccchhhhcccHHH
Confidence 9999998752 122222222221 22222 2456899999999999998
No 297
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.95 E-value=1.8e-09 Score=102.00 Aligned_cols=66 Identities=20% Similarity=0.194 Sum_probs=44.1
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh----CCCeEEEEEecCC
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL----GVNQLGVVINKLD 322 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~----~i~~iIVviNKiD 322 (902)
..+.|+|++|...+.......+..+|++|+|+|.++... + ....+.+..+... .-.|+|+|.||.|
T Consensus 50 ~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s---~---~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 50 QSLQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPES---L---EYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EEEEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHH---H---HHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred eEEEEEecCccceecccccchhhcCcEEEEEEcCCChHH---H---HHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 348999999998877766666999999999999997521 1 1222222222222 2245789999998
No 298
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.94 E-value=4.2e-09 Score=107.19 Aligned_cols=71 Identities=21% Similarity=0.295 Sum_probs=44.3
Q ss_pred CeEEEEEeCCCccchHHHHHHH---HHHcCEEEEEEECCCCccccccCCchhhHHHH-HHHHH----hCCCeEEEEEecC
Q psy15197 250 TKYITLLDAPGHKDFIPNMITG---ATQADVALLVVDATRGEFETGFESGGQTREHA-LLVRS----LGVNQLGVVINKL 321 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~---l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l-~~l~~----~~i~~iIVviNKi 321 (902)
+..+.+||+|||.+........ +..+.++|||||++.-..+ + ....+.+ .++.. .+.++++|++||.
T Consensus 48 ~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~~~----~-~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~ 122 (181)
T PF09439_consen 48 GKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQKE----L-RDVAEYLYDILSDTEVQKNKPPILIACNKQ 122 (181)
T ss_dssp GTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHHHH----H-HHHHHHHHHHHHHHHCCTT--EEEEEEE-T
T ss_pred CCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccchhh----H-HHHHHHHHHHHHhhhhccCCCCEEEEEeCc
Confidence 4578999999999976666665 7889999999999742110 0 1122222 22221 1456788999999
Q ss_pred CCCC
Q psy15197 322 DTVS 325 (902)
Q Consensus 322 Dl~~ 325 (902)
|+..
T Consensus 123 Dl~~ 126 (181)
T PF09439_consen 123 DLFT 126 (181)
T ss_dssp TSTT
T ss_pred cccc
Confidence 9875
No 299
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.93 E-value=1.4e-08 Score=106.50 Aligned_cols=72 Identities=25% Similarity=0.172 Sum_probs=52.8
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhC--CCeEEEEEecCCCCCc
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLG--VNQLGVVINKLDTVSW 326 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~--i~~iIVviNKiDl~~~ 326 (902)
...+.+|||+|+.+|...+..+...++++++|+|.+.... ......+....+.... .-++|+|.||+|+...
T Consensus 53 ~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~-----~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~ 126 (219)
T COG1100 53 NIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRES-----SDELTEEWLEELRELAPDDVPILLVGNKIDLFDE 126 (219)
T ss_pred EEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchh-----hhHHHHHHHHHHHHhCCCCceEEEEecccccccc
Confidence 4679999999999999999999999999999999986211 1122333333444443 2457899999999764
No 300
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.92 E-value=8.5e-09 Score=115.07 Aligned_cols=71 Identities=13% Similarity=0.132 Sum_probs=48.4
Q ss_pred eEEEEEeCCCccc-------------------------hHHH----HHHHHH-HcCEEEEEE-ECCCCccccccCCchhh
Q psy15197 251 KYITLLDAPGHKD-------------------------FIPN----MITGAT-QADVALLVV-DATRGEFETGFESGGQT 299 (902)
Q Consensus 251 ~~i~lIDTPG~~d-------------------------f~~~----~~~~l~-~aD~aIlVV-Da~~g~~E~~~~~~~qt 299 (902)
.++.||||+|+.+ |... +...+. .+|++|+|. |++-+..... +.....
T Consensus 91 ~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re-~y~~aE 169 (492)
T TIGR02836 91 FKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPRE-DYVEAE 169 (492)
T ss_pred ccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccc-cchHHH
Confidence 5899999999865 2222 566677 799999999 8861110000 012345
Q ss_pred HHHHHHHHHhCCCeEEEEEecCCC
Q psy15197 300 REHALLVRSLGVNQLGVVINKLDT 323 (902)
Q Consensus 300 ~~~l~~l~~~~i~~iIVviNKiDl 323 (902)
.+.+..+++.++| +|+++||+|-
T Consensus 170 e~~i~eLk~~~kP-fiivlN~~dp 192 (492)
T TIGR02836 170 ERVIEELKELNKP-FIILLNSTHP 192 (492)
T ss_pred HHHHHHHHhcCCC-EEEEEECcCC
Confidence 6677888888866 7799999993
No 301
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.86 E-value=6.6e-09 Score=97.20 Aligned_cols=92 Identities=23% Similarity=0.337 Sum_probs=61.6
Q ss_pred EEeCCCc----cchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHHH
Q psy15197 255 LLDAPGH----KDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDR 330 (902)
Q Consensus 255 lIDTPG~----~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~ 330 (902)
.|||||- ..+....+..+.++|++++|-.++++.. -|+ ..+ ...+.+++|-||+|.|+++ ...
T Consensus 41 ~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s--~f~--------p~f-~~~~~k~vIgvVTK~DLae--d~d 107 (148)
T COG4917 41 DIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPES--RFP--------PGF-LDIGVKKVIGVVTKADLAE--DAD 107 (148)
T ss_pred ccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccc--cCC--------ccc-ccccccceEEEEecccccc--hHh
Confidence 5899993 3455555666678999999999988722 111 111 2223445779999999984 222
Q ss_pred HHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 331 FQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 331 ~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+ +.....|.+.|-. +|+.+|+.+..|+++
T Consensus 108 I----~~~~~~L~eaGa~----~IF~~s~~d~~gv~~ 136 (148)
T COG4917 108 I----SLVKRWLREAGAE----PIFETSAVDNQGVEE 136 (148)
T ss_pred H----HHHHHHHHHcCCc----ceEEEeccCcccHHH
Confidence 2 2234455566643 899999999999998
No 302
>PRK13768 GTPase; Provisional
Probab=98.85 E-value=8.1e-09 Score=111.56 Aligned_cols=116 Identities=23% Similarity=0.359 Sum_probs=69.5
Q ss_pred eEEEEEeCCCccchH------HHHHHHHHH--cCEEEEEEECCCCccccccCCchhhHHHHHHHH-----HhCCCeEEEE
Q psy15197 251 KYITLLDAPGHKDFI------PNMITGATQ--ADVALLVVDATRGEFETGFESGGQTREHALLVR-----SLGVNQLGVV 317 (902)
Q Consensus 251 ~~i~lIDTPG~~df~------~~~~~~l~~--aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~-----~~~i~~iIVv 317 (902)
..+.+|||||+.++. ......+.. ++++++|+|++.+.. ..+.....++. ..+.+ +|+|
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~-------~~d~~~~~~l~~~~~~~~~~~-~i~v 168 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKT-------PSDFVSLLLLALSVQLRLGLP-QIPV 168 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCC-------HHHHHHHHHHHHHHHHHcCCC-EEEE
Confidence 368899999987632 222333333 899999999976532 22322222221 34655 6699
Q ss_pred EecCCCCCchH-HHHHHHHHH---------------------HHHhhhhcCCCCCCceEecCCCccCCCCCCCCCCcccc
Q psy15197 318 INKLDTVSWSQ-DRFQEIVTK---------------------LGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALT 375 (902)
Q Consensus 318 iNKiDl~~~~~-~~~~~i~~~---------------------l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~ 375 (902)
+||+|+.+.++ +...+..+. +...++..+. ..+++++|++++.|+++
T Consensus 169 ~nK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~---~~~vi~iSa~~~~gl~~-------- 237 (253)
T PRK13768 169 LNKADLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGL---PVRVIPVSAKTGEGFDE-------- 237 (253)
T ss_pred EEhHhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCC---CCcEEEEECCCCcCHHH--------
Confidence 99999975322 111111111 1112223331 24789999999999998
Q ss_pred cccCcccHHHHHHhcCC
Q psy15197 376 SWYSGPCLLDVIDNFKT 392 (902)
Q Consensus 376 ~w~~g~~Lle~L~~l~~ 392 (902)
|.+.|.+..+
T Consensus 238 -------L~~~I~~~l~ 247 (253)
T PRK13768 238 -------LYAAIQEVFC 247 (253)
T ss_pred -------HHHHHHHHcC
Confidence 8888877654
No 303
>KOG0079|consensus
Probab=98.85 E-value=5.8e-09 Score=99.80 Aligned_cols=106 Identities=23% Similarity=0.200 Sum_probs=74.1
Q ss_pred CCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh--CCCeEEEEEecCCCCCc
Q psy15197 249 KTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL--GVNQLGVVINKLDTVSW 326 (902)
Q Consensus 249 ~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~--~i~~iIVviNKiDl~~~ 326 (902)
....+.||||+|.+.|...+..+.+..+++++|.|.+.+.. |. .-++.+..+... .++. |+|.||.|.++.
T Consensus 55 ~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ES---F~---Nv~rWLeei~~ncdsv~~-vLVGNK~d~~~R 127 (198)
T KOG0079|consen 55 DRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGES---FN---NVKRWLEEIRNNCDSVPK-VLVGNKNDDPER 127 (198)
T ss_pred cEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcchhh---hH---hHHHHHHHHHhcCccccc-eecccCCCCccc
Confidence 34689999999999999999999999999999999998832 22 233334333332 2344 489999998752
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCCC
Q psy15197 327 SQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQ 370 (902)
Q Consensus 327 ~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~ 370 (902)
. --..++...+..+.++ ..+.+||+...|++.++.
T Consensus 128 r----vV~t~dAr~~A~~mgi-----e~FETSaKe~~NvE~mF~ 162 (198)
T KOG0079|consen 128 R----VVDTEDARAFALQMGI-----ELFETSAKENENVEAMFH 162 (198)
T ss_pred e----eeehHHHHHHHHhcCc-----hheehhhhhcccchHHHH
Confidence 1 1112233444555554 789999999999998443
No 304
>PTZ00099 rab6; Provisional
Probab=98.83 E-value=1e-08 Score=104.74 Aligned_cols=103 Identities=19% Similarity=0.217 Sum_probs=67.9
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHH-HHHHhC-CCeEEEEEecCCCCCch
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHAL-LVRSLG-VNQLGVVINKLDTVSWS 327 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~-~l~~~~-i~~iIVviNKiDl~~~~ 327 (902)
...+.||||||+++|...+...++.||++|+|+|+++... |+ .....+. +....+ ..++|+|.||+|+.+..
T Consensus 28 ~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~s---f~---~~~~w~~~i~~~~~~~~piilVgNK~DL~~~~ 101 (176)
T PTZ00099 28 PVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQS---FE---NTTKWIQDILNERGKDVIIALVGNKTDLGDLR 101 (176)
T ss_pred EEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCeEEEEEECccccccc
Confidence 4688999999999999988889999999999999987521 11 1122222 222222 23477999999986421
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 328 QDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 328 ~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
....++ .....+..+ ..++++||++|.||.+
T Consensus 102 ~v~~~e----~~~~~~~~~-----~~~~e~SAk~g~nV~~ 132 (176)
T PTZ00099 102 KVTYEE----GMQKAQEYN-----TMFHETSAKAGHNIKV 132 (176)
T ss_pred CCCHHH----HHHHHHHcC-----CEEEEEECCCCCCHHH
Confidence 111111 122223333 2689999999999998
No 305
>KOG0091|consensus
Probab=98.82 E-value=2.7e-08 Score=96.89 Aligned_cols=103 Identities=20% Similarity=0.136 Sum_probs=71.5
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHH-hC---CCeEEEEEecCCCCCc
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRS-LG---VNQLGVVINKLDTVSW 326 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~-~~---i~~iIVviNKiDl~~~ 326 (902)
.++.||||+|+++|...+.++.+.+=++++|.|.+.. .+|+-... .+..+.. .+ .+.+.+|..|+|+...
T Consensus 58 iklqlwdtagqerfrsitksyyrnsvgvllvyditnr---~sfehv~~---w~~ea~m~~q~P~k~VFlLVGhKsDL~Sq 131 (213)
T KOG0091|consen 58 IKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNR---ESFEHVEN---WVKEAAMATQGPDKVVFLLVGHKSDLQSQ 131 (213)
T ss_pred EEEEEeeccchHHHHHHHHHHhhcccceEEEEeccch---hhHHHHHH---HHHHHHHhcCCCCeeEEEEeccccchhhh
Confidence 4788999999999999999999999999999999876 22221111 1111111 12 1235568899999742
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCC
Q psy15197 327 SQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 368 (902)
Q Consensus 327 ~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~ 368 (902)
. +-..++.+++.+..|+ .+|.+||++|.|+++.
T Consensus 132 R----qVt~EEaEklAa~hgM-----~FVETSak~g~NVeEA 164 (213)
T KOG0091|consen 132 R----QVTAEEAEKLAASHGM-----AFVETSAKNGCNVEEA 164 (213)
T ss_pred c----cccHHHHHHHHHhcCc-----eEEEecccCCCcHHHH
Confidence 1 2223445556666676 7899999999999983
No 306
>KOG0071|consensus
Probab=98.81 E-value=3.4e-08 Score=93.93 Aligned_cols=119 Identities=17% Similarity=0.170 Sum_probs=79.6
Q ss_pred EEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHH--HhCCCeEE
Q psy15197 238 TMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVR--SLGVNQLG 315 (902)
Q Consensus 238 Tid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~--~~~i~~iI 315 (902)
|+..+...+.+++..++++|..|+.+....+..+.....++|||+|+.+.-. +...-.|...++. ++.--+++
T Consensus 48 TvGFnvetVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr-----~eeAr~ELh~ii~~~em~~~~~L 122 (180)
T KOG0071|consen 48 TVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDR-----IEEARNELHRIINDREMRDAIIL 122 (180)
T ss_pred ccceeEEEEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEEEeccchhh-----HHHHHHHHHHHhCCHhhhcceEE
Confidence 3344445567889999999999999999999999999999999999875410 1011111112221 22223467
Q ss_pred EEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 316 VVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 316 VviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
|..||.|+++.-. . .++..+++......+.+.+.++||.+|+|+.+
T Consensus 123 vlANkQDlp~A~~--p----qei~d~leLe~~r~~~W~vqp~~a~~gdgL~e 168 (180)
T KOG0071|consen 123 ILANKQDLPDAMK--P----QEIQDKLELERIRDRNWYVQPSCALSGDGLKE 168 (180)
T ss_pred EEecCcccccccC--H----HHHHHHhccccccCCccEeeccccccchhHHH
Confidence 8899999986321 1 22333343333445667889999999999887
No 307
>KOG0097|consensus
Probab=98.80 E-value=4.3e-08 Score=92.94 Aligned_cols=100 Identities=24% Similarity=0.252 Sum_probs=70.2
Q ss_pred CCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHH----HHHHHhCCC--eEEEEEecCC
Q psy15197 249 KTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHA----LLVRSLGVN--QLGVVINKLD 322 (902)
Q Consensus 249 ~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l----~~l~~~~i~--~iIVviNKiD 322 (902)
...++.||||+|+++|..-+.++.+.+-++++|.|.+... +-.|+ .-++.+.-| .++++.||.|
T Consensus 58 qkiklqiwdtagqerfravtrsyyrgaagalmvyditrrs----------tynhlsswl~dar~ltnpnt~i~lignkad 127 (215)
T KOG0097|consen 58 QKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRS----------TYNHLSSWLTDARNLTNPNTVIFLIGNKAD 127 (215)
T ss_pred cEEEEEEeecccHHHHHHHHHHHhccccceeEEEEehhhh----------hhhhHHHHHhhhhccCCCceEEEEecchhh
Confidence 3467899999999999999999999999999999998762 32332 222333223 3556779999
Q ss_pred CCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 323 TVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 323 l~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+.+..... .++...+.++-|+ -++.+||++|.|++.
T Consensus 128 le~qrdv~----yeeak~faeengl-----~fle~saktg~nved 163 (215)
T KOG0097|consen 128 LESQRDVT----YEEAKEFAEENGL-----MFLEASAKTGQNVED 163 (215)
T ss_pred hhhcccCc----HHHHHHHHhhcCe-----EEEEecccccCcHHH
Confidence 85421111 2333444555555 689999999999987
No 308
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.80 E-value=1.2e-07 Score=101.29 Aligned_cols=84 Identities=21% Similarity=0.114 Sum_probs=57.6
Q ss_pred CCeEEeeeEEEEEECC-eEEEEEeCCCccc-------------hHHHHHHHHH-HcCEEEEEEECCCCccccccCCchhh
Q psy15197 235 RGITMDVGQSQFETKT-KYITLLDAPGHKD-------------FIPNMITGAT-QADVALLVVDATRGEFETGFESGGQT 299 (902)
Q Consensus 235 rGiTid~~~~~~~~~~-~~i~lIDTPG~~d-------------f~~~~~~~l~-~aD~aIlVVDa~~g~~E~~~~~~~qt 299 (902)
.+++-+.....+...+ ..++||||||..+ ....+..+++ ..+++++|+|++.+.. .+.
T Consensus 108 ~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~-------~~d 180 (240)
T smart00053 108 KGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLA-------NSD 180 (240)
T ss_pred CcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCC-------chh
Confidence 4555555555565554 4799999999852 2234666777 4569999999987743 334
Q ss_pred -HHHHHHHHHhCCCeEEEEEecCCCCCc
Q psy15197 300 -REHALLVRSLGVNQLGVVINKLDTVSW 326 (902)
Q Consensus 300 -~~~l~~l~~~~i~~iIVviNKiDl~~~ 326 (902)
.+..+.+...+.+ +|+|+||+|..+.
T Consensus 181 ~l~ia~~ld~~~~r-ti~ViTK~D~~~~ 207 (240)
T smart00053 181 ALKLAKEVDPQGER-TIGVITKLDLMDE 207 (240)
T ss_pred HHHHHHHHHHcCCc-EEEEEECCCCCCc
Confidence 4566666666655 6699999998753
No 309
>PTZ00258 GTP-binding protein; Provisional
Probab=98.79 E-value=7.3e-08 Score=109.35 Aligned_cols=35 Identities=17% Similarity=0.145 Sum_probs=28.7
Q ss_pred eEEEEEeCCCccc-------hHHHHHHHHHHcCEEEEEEECC
Q psy15197 251 KYITLLDAPGHKD-------FIPNMITGATQADVALLVVDAT 285 (902)
Q Consensus 251 ~~i~lIDTPG~~d-------f~~~~~~~l~~aD~aIlVVDa~ 285 (902)
.++.|+||||..+ ........++.+|++++|||+.
T Consensus 85 aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 85 AQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 4689999999764 4445677789999999999985
No 310
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.79 E-value=2e-08 Score=100.80 Aligned_cols=65 Identities=25% Similarity=0.240 Sum_probs=45.0
Q ss_pred CeEEEEEeCCCccc----hHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecC
Q psy15197 250 TKYITLLDAPGHKD----FIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKL 321 (902)
Q Consensus 250 ~~~i~lIDTPG~~d----f~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKi 321 (902)
...+.||||||..+ ....+..++..+|++|+|++++.... ....+.+..........+|+|+||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~-------~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLT-------ESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGG-------GHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccc-------hHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 45799999999865 23557778889999999999998633 2333334333333445588999995
No 311
>KOG0395|consensus
Probab=98.79 E-value=1.9e-08 Score=104.47 Aligned_cols=106 Identities=24% Similarity=0.198 Sum_probs=70.6
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHH
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQD 329 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~ 329 (902)
...+.|+||+|.++|......++..+|+.++|.+.++. .+|+...+..+.+...+....-|+|+|.||+|+......
T Consensus 50 ~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~---~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V 126 (196)
T KOG0395|consen 50 VCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDR---SSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQV 126 (196)
T ss_pred EEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCH---HHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhcccc
Confidence 35677999999999999999999999999999999876 334333333333322222222247899999999642111
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 330 RFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 330 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
. .++-..+....+ ++++.+||+...++++
T Consensus 127 ~----~eeg~~la~~~~-----~~f~E~Sak~~~~v~~ 155 (196)
T KOG0395|consen 127 S----EEEGKALARSWG-----CAFIETSAKLNYNVDE 155 (196)
T ss_pred C----HHHHHHHHHhcC-----CcEEEeeccCCcCHHH
Confidence 1 112222233333 3799999999999988
No 312
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.78 E-value=4.7e-08 Score=106.27 Aligned_cols=104 Identities=21% Similarity=0.259 Sum_probs=62.0
Q ss_pred CCeEEEEEeCCCccc-----------hHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHH----hCCCe
Q psy15197 249 KTKYITLLDAPGHKD-----------FIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRS----LGVNQ 313 (902)
Q Consensus 249 ~~~~i~lIDTPG~~d-----------f~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~----~~i~~ 313 (902)
.+..+++-|.||+.+ |++. +..|.+.+.|||.+...- -+.......+...+.+ +.-++
T Consensus 205 ~~~sfv~ADIPGLIEGAs~G~GLG~~FLrH----IERt~vL~hviD~s~~~~---~dp~~~~~~i~~EL~~Y~~~L~~K~ 277 (369)
T COG0536 205 GGESFVVADIPGLIEGASEGVGLGLRFLRH----IERTRVLLHVIDLSPIDG---RDPIEDYQTIRNELEKYSPKLAEKP 277 (369)
T ss_pred CCCcEEEecCcccccccccCCCccHHHHHH----HHhhheeEEEEecCcccC---CCHHHHHHHHHHHHHHhhHHhccCc
Confidence 456799999999876 5544 456789999999985310 0001122222222332 23355
Q ss_pred EEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 314 LGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 314 iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.+||+||||++. +.+.++...+.+.. ..++. ..++|||.+++|+++
T Consensus 278 ~ivv~NKiD~~~-~~e~~~~~~~~l~~---~~~~~----~~~~ISa~t~~g~~~ 323 (369)
T COG0536 278 RIVVLNKIDLPL-DEEELEELKKALAE---ALGWE----VFYLISALTREGLDE 323 (369)
T ss_pred eEEEEeccCCCc-CHHHHHHHHHHHHH---hcCCC----cceeeehhcccCHHH
Confidence 679999999653 24444544444432 23331 223399999999998
No 313
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.78 E-value=1.3e-07 Score=108.33 Aligned_cols=35 Identities=29% Similarity=0.358 Sum_probs=28.4
Q ss_pred eEEEEEeCCCccc-------hHHHHHHHHHHcCEEEEEEECC
Q psy15197 251 KYITLLDAPGHKD-------FIPNMITGATQADVALLVVDAT 285 (902)
Q Consensus 251 ~~i~lIDTPG~~d-------f~~~~~~~l~~aD~aIlVVDa~ 285 (902)
..+.|+||||..+ .....+..++.||++++|||+.
T Consensus 72 ~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 72 IPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred eeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4689999999743 3335667789999999999997
No 314
>KOG0088|consensus
Probab=98.77 E-value=3.2e-09 Score=102.50 Aligned_cols=103 Identities=23% Similarity=0.247 Sum_probs=71.4
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHH-hCC-CeEEEEEecCCCCCch
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRS-LGV-NQLGVVINKLDTVSWS 327 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~-~~i-~~iIVviNKiDl~~~~ 327 (902)
...+.||||+|+++|...---+++.++++|||.|.++. .+|... +.....++. +|- -.++||.||+|+..
T Consensus 61 ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDr---dSFqKV---KnWV~Elr~mlGnei~l~IVGNKiDLEe-- 132 (218)
T KOG0088|consen 61 RADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDR---DSFQKV---KNWVLELRTMLGNEIELLIVGNKIDLEE-- 132 (218)
T ss_pred eeeeeeeeccchHhhhccCceEEeCCCceEEEEeccch---HHHHHH---HHHHHHHHHHhCCeeEEEEecCcccHHH--
Confidence 34789999999999988888888999999999999976 222221 112222332 331 23678999999853
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 328 QDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 328 ~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+..-..++...+.+..|. .++.+||+.+.||.+
T Consensus 133 --eR~Vt~qeAe~YAesvGA-----~y~eTSAk~N~Gi~e 165 (218)
T KOG0088|consen 133 --ERQVTRQEAEAYAESVGA-----LYMETSAKDNVGISE 165 (218)
T ss_pred --hhhhhHHHHHHHHHhhch-----hheecccccccCHHH
Confidence 222333455556666654 678999999999999
No 315
>KOG0090|consensus
Probab=98.77 E-value=6.6e-08 Score=98.65 Aligned_cols=78 Identities=18% Similarity=0.236 Sum_probs=53.1
Q ss_pred EEEEEECCeEEEEEeCCCccchHHHHHHHHH---HcCEEEEEEECCCCccccccCCchhhHHH-HHHHHH----hCCCeE
Q psy15197 243 QSQFETKTKYITLLDAPGHKDFIPNMITGAT---QADVALLVVDATRGEFETGFESGGQTREH-ALLVRS----LGVNQL 314 (902)
Q Consensus 243 ~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~---~aD~aIlVVDa~~g~~E~~~~~~~qt~~~-l~~l~~----~~i~~i 314 (902)
...+.+++...++||.|||.+........+. .+-++|||||+..-.-+ + ....+. ...+.. .+.+++
T Consensus 74 ~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~----v-rdvaefLydil~~~~~~~~~~~v 148 (238)
T KOG0090|consen 74 EATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKN----V-RDVAEFLYDILLDSRVKKNKPPV 148 (238)
T ss_pred eeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccchh----h-HHHHHHHHHHHHhhccccCCCCE
Confidence 3445666777999999999998888888887 79999999998753210 1 111222 222221 245678
Q ss_pred EEEEecCCCCC
Q psy15197 315 GVVINKLDTVS 325 (902)
Q Consensus 315 IVviNKiDl~~ 325 (902)
+|++||.|+..
T Consensus 149 LIaCNKqDl~t 159 (238)
T KOG0090|consen 149 LIACNKQDLFT 159 (238)
T ss_pred EEEecchhhhh
Confidence 89999999864
No 316
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.75 E-value=1.7e-07 Score=102.77 Aligned_cols=74 Identities=14% Similarity=0.042 Sum_probs=44.2
Q ss_pred EEECCeEEEEEeCCCccchH---HHHHHHHH------HcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh-C---CC
Q psy15197 246 FETKTKYITLLDAPGHKDFI---PNMITGAT------QADVALLVVDATRGEFETGFESGGQTREHALLVRSL-G---VN 312 (902)
Q Consensus 246 ~~~~~~~i~lIDTPG~~df~---~~~~~~l~------~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~-~---i~ 312 (902)
....+..+++|||||+.+.. ......++ ..|++|+|...+..- ....+...+..+... | ..
T Consensus 81 ~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R------~~~~DkqlLk~Iqe~FG~~iw~ 154 (313)
T TIGR00991 81 RTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYR------VDTLDGQVIRAITDSFGKDIWR 154 (313)
T ss_pred EEECCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCccc------CCHHHHHHHHHHHHHhhhhhhc
Confidence 34578899999999998731 22233333 489999995543221 112334444433332 2 24
Q ss_pred eEEEEEecCCCCC
Q psy15197 313 QLGVVINKLDTVS 325 (902)
Q Consensus 313 ~iIVviNKiDl~~ 325 (902)
++||++|+.|...
T Consensus 155 ~~IVVfTh~d~~~ 167 (313)
T TIGR00991 155 KSLVVLTHAQFSP 167 (313)
T ss_pred cEEEEEECCccCC
Confidence 5789999999763
No 317
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.75 E-value=1.2e-07 Score=106.44 Aligned_cols=35 Identities=17% Similarity=0.243 Sum_probs=28.3
Q ss_pred eEEEEEeCCCccc-------hHHHHHHHHHHcCEEEEEEECC
Q psy15197 251 KYITLLDAPGHKD-------FIPNMITGATQADVALLVVDAT 285 (902)
Q Consensus 251 ~~i~lIDTPG~~d-------f~~~~~~~l~~aD~aIlVVDa~ 285 (902)
..+.|+||||..+ .....+..++.+|++++|||+.
T Consensus 66 a~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 66 ATIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred ceEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 3689999999764 3345667788999999999995
No 318
>KOG0410|consensus
Probab=98.73 E-value=2.7e-08 Score=106.79 Aligned_cols=94 Identities=24% Similarity=0.273 Sum_probs=67.1
Q ss_pred CCeEEEEEeCCCccc--------hHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCe------E
Q psy15197 249 KTKYITLLDAPGHKD--------FIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQ------L 314 (902)
Q Consensus 249 ~~~~i~lIDTPG~~d--------f~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~------i 314 (902)
++..+.+.||-|+.. -...+..-...||++|-|+|.+.+..| .|.+..+..++.++++. +
T Consensus 224 sg~~vlltDTvGFisdLP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae------~q~e~Vl~vL~~igv~~~pkl~~m 297 (410)
T KOG0410|consen 224 SGNFVLLTDTVGFISDLPIQLVAAFQATLEEVAEADLLLHVVDISHPNAE------EQRETVLHVLNQIGVPSEPKLQNM 297 (410)
T ss_pred CCcEEEEeechhhhhhCcHHHHHHHHHHHHHHhhcceEEEEeecCCccHH------HHHHHHHHHHHhcCCCcHHHHhHH
Confidence 366889999999865 345566777889999999999998544 56666778888888762 4
Q ss_pred EEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 315 GVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 315 IVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
|=|-||+|......+ . +..-.+++||++|+|+.+
T Consensus 298 ieVdnkiD~e~~~~e--------------~-----E~n~~v~isaltgdgl~e 331 (410)
T KOG0410|consen 298 IEVDNKIDYEEDEVE--------------E-----EKNLDVGISALTGDGLEE 331 (410)
T ss_pred HhhccccccccccCc--------------c-----ccCCccccccccCccHHH
Confidence 446788886531000 0 001258999999999998
No 319
>COG0753 KatE Catalase [Inorganic ion transport and metabolism]
Probab=98.73 E-value=5.3e-09 Score=116.80 Aligned_cols=100 Identities=46% Similarity=0.645 Sum_probs=93.0
Q ss_pred ccccCCCCCCCCccccccccCCCCCCCCcchhhhhccccccCCCCccchhcccCCCCccccccchhhhccCCCCCCCCCc
Q psy15197 91 PVDTTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFEDRETIIKTIGPHGPVPLE 170 (902)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (902)
+..||.+|.|+....--++.++.||++++|+.++++|-||++|+||||+||++|.||+|+|..++.+-+
T Consensus 14 ~~lT~~~G~pv~dnqnsltaG~rGP~llqD~~l~Ekl~hFdrErIPERvvHAkG~GA~G~F~~t~dis~----------- 82 (496)
T COG0753 14 TTLTTNQGAPVADNQNSLTAGPRGPTLLQDFHLLEKLAHFDRERIPERVVHAKGSGAHGYFEVTEDISK----------- 82 (496)
T ss_pred ceeeccCCCcccCcccceeccCCCCeehhhHHHHHHHHhhccccCcchheecccccceeEEEeccchHh-----------
Confidence 456889999999999999999999999999999999999999999999999999999999998877744
Q ss_pred ccccccccccccCCCCcccccccCCCCccccce
Q psy15197 171 DTYYLDKLFHFSGERNPERVVHAKGGGAFGYFE 203 (902)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (902)
|.-.++|...|++.|-.++-+-++|+.|..+
T Consensus 83 --yT~A~~f~e~Gk~TP~fvRFSTV~g~~gsaD 113 (496)
T COG0753 83 --YTKAKLFQEVGKKTPVFVRFSTVAGERGSAD 113 (496)
T ss_pred --hhcchhhcccCcccceEEEEEeccCCCCCcc
Confidence 8889999999999999999999999999666
No 320
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=98.72 E-value=7.7e-08 Score=86.31 Aligned_cols=81 Identities=21% Similarity=0.232 Sum_probs=69.3
Q ss_pred CCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCcEEEEEEEEE----ceEeeeeeccCCeEEEeeeccccc
Q psy15197 398 TKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYV----DEMSVSAAYAGDNVSVTLLNYDQQ 473 (902)
Q Consensus 398 ~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~----~~~~v~~a~aGdiv~I~l~~~~~~ 473 (902)
+.||.+.|+++..+++.|+++++||++|+|+.|+.|.+.. ....++.+|.. ...++++|.|||+++|... +
T Consensus 1 ~~p~~~~Vfkv~~d~~~G~la~~RV~sG~l~~g~~v~~~~-~~~~~v~~l~~~~g~~~~~v~~~~aGdI~ai~gl----~ 75 (85)
T cd03690 1 ESELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVRVNR-EEKIKITELRVFNNGEVVTADTVTAGDIAILTGL----K 75 (85)
T ss_pred CCCcEEEEEEeEECCCCCeEEEEEEccCEEcCCCEEEeCC-CcEEEeceeEEEeCCCeEECcEECCCCEEEEECC----C
Confidence 3689999999999999999999999999999999998765 44567777764 5678999999999999886 7
Q ss_pred cceeeccccC
Q psy15197 474 NVSVGFLLSE 483 (902)
Q Consensus 474 ~i~kG~vL~~ 483 (902)
+++.|++|++
T Consensus 76 ~~~~Gdtl~~ 85 (85)
T cd03690 76 GLRVGDVLGD 85 (85)
T ss_pred CCcCccccCC
Confidence 7889998853
No 321
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.72 E-value=5.7e-08 Score=107.63 Aligned_cols=99 Identities=14% Similarity=0.128 Sum_probs=57.7
Q ss_pred CCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchH
Q psy15197 249 KTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQ 328 (902)
Q Consensus 249 ~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~ 328 (902)
.++.+.||||||... .....+..+|.++++.+...+ ........- ..+.+ .++|+||+|+.....
T Consensus 125 ~g~D~viidT~G~~~---~e~~i~~~aD~i~vv~~~~~~---------~el~~~~~~--l~~~~-~ivv~NK~Dl~~~~~ 189 (300)
T TIGR00750 125 AGYDVIIVETVGVGQ---SEVDIANMADTFVVVTIPGTG---------DDLQGIKAG--LMEIA-DIYVVNKADGEGATN 189 (300)
T ss_pred CCCCEEEEeCCCCch---hhhHHHHhhceEEEEecCCcc---------HHHHHHHHH--Hhhhc-cEEEEEcccccchhH
Confidence 478899999999753 333456778999988655433 111111111 12344 469999999975321
Q ss_pred HHHHHHHHH----HHHhhhh-cCCCCCCceEecCCCccCCCCCC
Q psy15197 329 DRFQEIVTK----LGAFLKQ-AGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 329 ~~~~~i~~~----l~~~l~~-~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
....... +..+.+. .++ ..+++++||++|.|+.+
T Consensus 190 --~~~~~~~~~~~l~~l~~~~~~~---~~~v~~iSA~~g~Gi~~ 228 (300)
T TIGR00750 190 --VTIARLMLALALEEIRRREDGW---RPPVLTTSAVEGRGIDE 228 (300)
T ss_pred --HHHHHHHHHHHHhhccccccCC---CCCEEEEEccCCCCHHH
Confidence 1111111 1111111 122 13689999999999998
No 322
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.68 E-value=5.1e-08 Score=102.11 Aligned_cols=95 Identities=15% Similarity=0.081 Sum_probs=54.2
Q ss_pred CeEEEEEeCCCc-cchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchH
Q psy15197 250 TKYITLLDAPGH-KDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQ 328 (902)
Q Consensus 250 ~~~i~lIDTPG~-~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~ 328 (902)
+..+.||+|.|. ..- .......+..+.|+|+..+.. . ........+.+ .++++||+|+.+...
T Consensus 102 ~~d~IiIEt~G~l~~~----~~~~~~~~~~i~Vvd~~~~d~---------~--~~~~~~~~~~a-~iiv~NK~Dl~~~~~ 165 (207)
T TIGR00073 102 DIDLLFIENVGNLVCP----ADFDLGEHMRVVLLSVTEGDD---------K--PLKYPGMFKEA-DLIVINKADLAEAVG 165 (207)
T ss_pred CCCEEEEecCCCcCCC----cccccccCeEEEEEecCcccc---------h--hhhhHhHHhhC-CEEEEEHHHccccch
Confidence 346788999992 110 011123566778999986521 1 11111222333 569999999975322
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 329 DRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 329 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
....+..+.+. ... ...+++++||++|.|+.+
T Consensus 166 ~~~~~~~~~l~----~~~---~~~~i~~~Sa~~g~gv~~ 197 (207)
T TIGR00073 166 FDVEKMKADAK----KIN---PEAEIILMSLKTGEGLDE 197 (207)
T ss_pred hhHHHHHHHHH----HhC---CCCCEEEEECCCCCCHHH
Confidence 22333333332 222 125899999999999998
No 323
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.67 E-value=1.6e-07 Score=98.77 Aligned_cols=98 Identities=19% Similarity=0.259 Sum_probs=56.5
Q ss_pred eeeEEEEEECCeEEEEEeCCCccc-------hHHHHHHHH----HHcCEEEEEEECCCCccccccCCchhhHHHHHHHHH
Q psy15197 240 DVGQSQFETKTKYITLLDAPGHKD-------FIPNMITGA----TQADVALLVVDATRGEFETGFESGGQTREHALLVRS 308 (902)
Q Consensus 240 d~~~~~~~~~~~~i~lIDTPG~~d-------f~~~~~~~l----~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~ 308 (902)
........+.+..+++|||||+.+ ....+..++ ...+++|||+... ..+ ...+..+..+..
T Consensus 38 ~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~-r~t-------~~~~~~l~~l~~ 109 (212)
T PF04548_consen 38 ECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLG-RFT-------EEDREVLELLQE 109 (212)
T ss_dssp S-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETT-B-S-------HHHHHHHHHHHH
T ss_pred ccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecC-cch-------HHHHHHHHHHHH
Confidence 333444577899999999999865 333344433 3589999999988 322 345555544443
Q ss_pred -hC---CCeEEEEEecCCCCCchHHHHHHHH-----HHHHHhhhhcCC
Q psy15197 309 -LG---VNQLGVVINKLDTVSWSQDRFQEIV-----TKLGAFLKQAGF 347 (902)
Q Consensus 309 -~~---i~~iIVviNKiDl~~~~~~~~~~i~-----~~l~~~l~~~~~ 347 (902)
.| .+.+|||+|..|....+. +++.+ +.+..+++.++-
T Consensus 110 ~FG~~~~k~~ivvfT~~d~~~~~~--~~~~l~~~~~~~l~~li~~c~~ 155 (212)
T PF04548_consen 110 IFGEEIWKHTIVVFTHADELEDDS--LEDYLKKESNEALQELIEKCGG 155 (212)
T ss_dssp HHCGGGGGGEEEEEEEGGGGTTTT--HHHHHHHHHHHHHHHHHHHTTT
T ss_pred HccHHHHhHhhHHhhhcccccccc--HHHHHhccCchhHhHHhhhcCC
Confidence 23 246788999888654221 22222 235566666653
No 324
>KOG0072|consensus
Probab=98.66 E-value=7e-08 Score=92.26 Aligned_cols=112 Identities=20% Similarity=0.181 Sum_probs=75.7
Q ss_pred EEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHH--hCCCeEEEEEecCC
Q psy15197 245 QFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRS--LGVNQLGVVINKLD 322 (902)
Q Consensus 245 ~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~--~~i~~iIVviNKiD 322 (902)
.+.+++-++.++|.-|.......+..+..+.|.+|+|||+++... +++ .-.+...++.+ +....++|+.||+|
T Consensus 56 ~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dr---is~--a~~el~~mL~E~eLq~a~llv~anKqD 130 (182)
T KOG0072|consen 56 TVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDR---ISI--AGVELYSMLQEEELQHAKLLVFANKQD 130 (182)
T ss_pred ccccccccceeeEccCcccccHHHHHHhcccceEEEEEeccchhh---hhh--hHHHHHHHhccHhhcCceEEEEecccc
Confidence 455678899999999999998999999999999999999987522 112 22233333332 23345778999999
Q ss_pred CCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 323 TVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 323 l~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
... .....++...|....+....+.|+..||.+|+|+++
T Consensus 131 ~~~------~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~ 169 (182)
T KOG0072|consen 131 YSG------ALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDP 169 (182)
T ss_pred chh------hhhHHHHHHHhChHHHhhheeEEEeeccccccCCcH
Confidence 753 112222222222222233456899999999999998
No 325
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=98.65 E-value=1.3e-07 Score=84.37 Aligned_cols=78 Identities=15% Similarity=0.129 Sum_probs=67.4
Q ss_pred ceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCcEEEEEEEEE----ceEeeeeeccCCeEEEeeeccccccce
Q psy15197 401 LRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYV----DEMSVSAAYAGDNVSVTLLNYDQQNVS 476 (902)
Q Consensus 401 l~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~----~~~~v~~a~aGdiv~I~l~~~~~~~i~ 476 (902)
|...|++++.+++.|+++++||++|+|++||.|.+...+...+|..|.. ...++++|.|||++.|... ++++
T Consensus 1 ~~a~VfK~~~d~~~g~i~~~Ri~sGtl~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl----~~~~ 76 (83)
T cd04092 1 LCALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTGKKERISRLLQPFADQYQEIPSLSAGNIGVITGL----KQTR 76 (83)
T ss_pred CEEEEEecccCCCCCeEEEEEEecCEECCCCEEEECCCCCEEEeeEEEEEECCCceECCeeCCCCEEEEECC----CCcc
Confidence 4578999999999999999999999999999999877776677877764 5578999999999999775 6688
Q ss_pred eecccc
Q psy15197 477 VGFLLS 482 (902)
Q Consensus 477 kG~vL~ 482 (902)
.|++|+
T Consensus 77 ~Gdtl~ 82 (83)
T cd04092 77 TGDTLV 82 (83)
T ss_pred cCCEEe
Confidence 999875
No 326
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=98.64 E-value=2.3e-07 Score=85.78 Aligned_cols=88 Identities=20% Similarity=0.316 Sum_probs=76.3
Q ss_pred CCCCceEEEeeEEeeC--------CCeEEEEEEEEeeEeeCCCEEEEccC-------C-----cEEEEEEEEEceEeeee
Q psy15197 397 LTKPLRMSVSDIYKST--------GSGYCIAGRVETGVILAGEKVMVQPQ-------N-----EVTTVKAVYVDEMSVSA 456 (902)
Q Consensus 397 ~~~pl~~~I~~i~~v~--------g~G~V~~GrV~sG~Lk~Gd~v~l~p~-------~-----~~~~V~sI~~~~~~v~~ 456 (902)
.++|++|.|.++|.+. ..|.|+.|+|.+|.|+.||.|.+.|. + ...+|.+|+..+..+++
T Consensus 2 ~~~pp~M~V~RsFdinkPG~~~~~l~GgVigGsi~~G~lkvgdeIEIrpg~~~~~~~~~~~~pi~T~I~sl~~~~~~l~~ 81 (113)
T cd03688 2 FTSPPRMIVIRSFDVNKPGTEVDDLKGGVAGGSLLQGVLKVGDEIEIRPGIVVKDEGKIKCRPIFTKIVSLKAENNDLQE 81 (113)
T ss_pred CCCCceEEEEEEEecCCCCCccccceeeEEEEEEEEEEEeCCCEEEEeeceeeecCCCeeEEEEEEEEEEEEecCccccE
Confidence 4688999999999998 89999999999999999999998854 1 24678899999999999
Q ss_pred eccCCeEEE---eeeccccccceeeccccCC
Q psy15197 457 AYAGDNVSV---TLLNYDQQNVSVGFLLSEL 484 (902)
Q Consensus 457 a~aGdiv~I---~l~~~~~~~i~kG~vL~~~ 484 (902)
|.||++++| ....+++.|..+|++++.+
T Consensus 82 a~pGgliGvgT~Ldpsltk~D~l~GqV~g~p 112 (113)
T cd03688 82 AVPGGLIGVGTKLDPTLTKADRLVGQVVGEP 112 (113)
T ss_pred EeCCCeEEEccccCccccccceeeEEEeecC
Confidence 999999999 4445777889999998864
No 327
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.61 E-value=3.8e-08 Score=105.26 Aligned_cols=110 Identities=19% Similarity=0.294 Sum_probs=51.9
Q ss_pred EEEEEeCCCccchHHHHHHHH--------HHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCC
Q psy15197 252 YITLLDAPGHKDFIPNMITGA--------TQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDT 323 (902)
Q Consensus 252 ~i~lIDTPG~~df~~~~~~~l--------~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl 323 (902)
.+.|+||||+.++.......- ...=++|+++|+.....-..| -......+.....++.| .|.|+||+|+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f--~s~~L~s~s~~~~~~lP-~vnvlsK~Dl 168 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKF--VSSLLLSLSIMLRLELP-HVNVLSKIDL 168 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHH--HHHHHHHHHHHHHHTSE-EEEEE--GGG
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhH--HHHHHHHHHHHhhCCCC-EEEeeeccCc
Confidence 789999999988554443333 334588999998753110000 00001111223335777 5599999999
Q ss_pred CCchHHH------------------HHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 324 VSWSQDR------------------FQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 324 ~~~~~~~------------------~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.+...+. ...+.+++..++...+. ...++++|+.+++|+.+
T Consensus 169 ~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~---~~~f~pls~~~~~~~~~ 227 (238)
T PF03029_consen 169 LSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGL---VIRFIPLSSKDGEGMEE 227 (238)
T ss_dssp S-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSS---S---EE-BTTTTTTHHH
T ss_pred ccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCC---CceEEEEECCChHHHHH
Confidence 8621110 12222233334443333 12789999999999998
No 328
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=98.61 E-value=2.4e-07 Score=82.56 Aligned_cols=78 Identities=22% Similarity=0.164 Sum_probs=67.6
Q ss_pred ceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCcEEEEEEEEE----ceEeeeeeccCCeEEEeeeccccccce
Q psy15197 401 LRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYV----DEMSVSAAYAGDNVSVTLLNYDQQNVS 476 (902)
Q Consensus 401 l~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~----~~~~v~~a~aGdiv~I~l~~~~~~~i~ 476 (902)
+...|+++..+++.|+++++||++|+|++||.|.+...+...+|.+|.. ...+++++.|||++.|... ++++
T Consensus 1 ~~a~Vfk~~~d~~~G~~~~~Rv~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~g~----~~~~ 76 (83)
T cd04088 1 FVALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTKGKKERVGRLLRMHGKKQEEVEEAGAGDIGAVAGL----KDTA 76 (83)
T ss_pred CEEEEEEcccCCCCceEEEEEEecCEEcCCCEEEECCCCcEEEeeEEEEEcCCCceECCEeCCCCEEEEECC----CCCc
Confidence 3568999999999999999999999999999999888777778888764 4678999999999999775 5688
Q ss_pred eecccc
Q psy15197 477 VGFLLS 482 (902)
Q Consensus 477 kG~vL~ 482 (902)
.|++|+
T Consensus 77 ~Gdtl~ 82 (83)
T cd04088 77 TGDTLC 82 (83)
T ss_pred cCCEee
Confidence 998875
No 329
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.59 E-value=6e-07 Score=95.36 Aligned_cols=120 Identities=23% Similarity=0.314 Sum_probs=68.2
Q ss_pred eEEeeeEEEEE-ECCeEEEEEeCCCccchHHH-----HHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhC
Q psy15197 237 ITMDVGQSQFE-TKTKYITLLDAPGHKDFIPN-----MITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLG 310 (902)
Q Consensus 237 iTid~~~~~~~-~~~~~i~lIDTPG~~df~~~-----~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~ 310 (902)
.|++.....+. .+...+++||+||+.++... ....++.++++|+|+|+.....+.. -......+..+.+.+
T Consensus 33 ~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~---l~~~~~~i~~l~~~s 109 (232)
T PF04670_consen 33 PTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDED---LAYLSDCIEALRQYS 109 (232)
T ss_dssp ---SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHH---HHHHHHHHHHHHHHS
T ss_pred CcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHH---HHHHHHHHHHHHHhC
Confidence 45555555554 34569999999999987665 4556789999999999984322110 011223333344432
Q ss_pred -CCeEEEEEecCCCCCch--HHHHHHHHHHHHHhhhhcCCCCCCceEecCCCcc
Q psy15197 311 -VNQLGVVINKLDTVSWS--QDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLT 361 (902)
Q Consensus 311 -i~~iIVviNKiDl~~~~--~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~ 361 (902)
--.+-|++.|||+...+ .+.++.+.+.+.+.+...+.. .+.++.+|-..
T Consensus 110 p~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~--~~~~~~TSI~D 161 (232)
T PF04670_consen 110 PNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIE--DITFFLTSIWD 161 (232)
T ss_dssp TT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-T--SEEEEEE-TTS
T ss_pred CCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhcccc--ceEEEeccCcC
Confidence 12356899999997522 233555666666666665542 35677777654
No 330
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.57 E-value=4.7e-07 Score=81.04 Aligned_cols=78 Identities=22% Similarity=0.283 Sum_probs=70.4
Q ss_pred EEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCc---EEEEEEEEEceEeeeeeccCCeEEEeeeccccccceeec
Q psy15197 403 MSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNE---VTTVKAVYVDEMSVSAAYAGDNVSVTLLNYDQQNVSVGF 479 (902)
Q Consensus 403 ~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~---~~~V~sI~~~~~~v~~a~aGdiv~I~l~~~~~~~i~kG~ 479 (902)
..|.++|++++.|+++.|+|.+|.|++|+.+.+.|.++ ..+|.+|+.++..+++|.+|+.|+|.+.+++ ++++|+
T Consensus 3 ~~V~~vf~~~~~g~vag~kV~~G~l~~g~~v~vlr~~~~~~~g~i~sl~~~~~~v~~a~~G~ecgi~l~~~~--d~~~Gd 80 (84)
T cd03692 3 AEVRAVFKISKVGNIAGCYVTDGKIKRNAKVRVLRNGEVIYEGKISSLKRFKDDVKEVKKGYECGITLENFN--DIKVGD 80 (84)
T ss_pred EEEEEEEECCCCcEEEEEEEEECEEeCCCEEEEEcCCCEEEEEEEEEEEEcCcccCEECCCCEEEEEEeCcc--cCCCCC
Confidence 56788998888899999999999999999999999984 5589999999999999999999999998766 899999
Q ss_pred ccc
Q psy15197 480 LLS 482 (902)
Q Consensus 480 vL~ 482 (902)
+|.
T Consensus 81 vi~ 83 (84)
T cd03692 81 IIE 83 (84)
T ss_pred EEE
Confidence 873
No 331
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.57 E-value=7.9e-07 Score=100.04 Aligned_cols=96 Identities=19% Similarity=0.262 Sum_probs=51.9
Q ss_pred EEEEEeCCCccc-------hHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCC
Q psy15197 252 YITLLDAPGHKD-------FIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTV 324 (902)
Q Consensus 252 ~i~lIDTPG~~d-------f~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~ 324 (902)
.++|||.||... |++.+ .+...|++|+|.+..-. .....+...+...+.+ +.+|-+|+|.-
T Consensus 87 nv~lWDlPG~gt~~f~~~~Yl~~~--~~~~yD~fiii~s~rf~---------~ndv~La~~i~~~gK~-fyfVRTKvD~D 154 (376)
T PF05049_consen 87 NVTLWDLPGIGTPNFPPEEYLKEV--KFYRYDFFIIISSERFT---------ENDVQLAKEIQRMGKK-FYFVRTKVDSD 154 (376)
T ss_dssp TEEEEEE--GGGSS--HHHHHHHT--TGGG-SEEEEEESSS-----------HHHHHHHHHHHHTT-E-EEEEE--HHHH
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHc--cccccCEEEEEeCCCCc---------hhhHHHHHHHHHcCCc-EEEEEeccccc
Confidence 589999999864 33322 35578988776654322 2445556667777755 77999999951
Q ss_pred ----------CchH-HHHHHHHHHHHHhhhhcCCCCCCceEecCCCcc
Q psy15197 325 ----------SWSQ-DRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLT 361 (902)
Q Consensus 325 ----------~~~~-~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~ 361 (902)
..++ ..++++.+...+.|+..+.. .-+++.||...
T Consensus 155 l~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~--~P~VFLVS~~d 200 (376)
T PF05049_consen 155 LYNERRRKPRTFNEEKLLQEIRENCLENLQKAGVS--EPQVFLVSSFD 200 (376)
T ss_dssp HHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-S--S--EEEB-TTT
T ss_pred HhhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCC--cCceEEEeCCC
Confidence 1112 22455556666666666653 34788899875
No 332
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=98.57 E-value=3.9e-07 Score=81.88 Aligned_cols=83 Identities=18% Similarity=0.147 Sum_probs=67.3
Q ss_pred ceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCcEEEEEEEEE---ceEeeeeeccCCeEEEeeecccccccee
Q psy15197 401 LRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYV---DEMSVSAAYAGDNVSVTLLNYDQQNVSV 477 (902)
Q Consensus 401 l~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~---~~~~v~~a~aGdiv~I~l~~~~~~~i~k 477 (902)
|.+.|+++..+++.|+++++||++|+|+.|+.|.+...++..++..|.. ...+++++.|||++.+..-....+++..
T Consensus 1 ~~~~Vfk~~~d~~~G~i~~~Rv~sG~l~~~~~v~~~~~~~~~~i~~l~~~~~~~~~~~~~~aGdI~~v~~g~~~l~~~~~ 80 (86)
T cd03699 1 LRALIFDSWYDPYRGVIALVRVFDGTLKKGDKIRFMSTGKEYEVEEVGIFRPEMTPTDELSAGQVGYIIAGIKTVKDARV 80 (86)
T ss_pred CEEEEEEeeccCCCCEEEEEEEEcCEEcCCCEEEEecCCCeEEEEEEEEECCCccCCceECCCCEEEEEccccccCcccc
Confidence 4688999999999999999999999999999998877666667777764 4568899999999998642122267889
Q ss_pred eccccC
Q psy15197 478 GFLLSE 483 (902)
Q Consensus 478 G~vL~~ 483 (902)
|++|+.
T Consensus 81 Gdtl~~ 86 (86)
T cd03699 81 GDTITL 86 (86)
T ss_pred ccEeeC
Confidence 998863
No 333
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=98.54 E-value=4.6e-07 Score=81.30 Aligned_cols=76 Identities=24% Similarity=0.190 Sum_probs=64.8
Q ss_pred EEeeEEe---eCCCeEEEEEEEEeeEeeCCCEEEEccCCcEEEEEEEEE----ceEeeeeeccCCeEEEeeeccccccce
Q psy15197 404 SVSDIYK---STGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYV----DEMSVSAAYAGDNVSVTLLNYDQQNVS 476 (902)
Q Consensus 404 ~I~~i~~---v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~----~~~~v~~a~aGdiv~I~l~~~~~~~i~ 476 (902)
.|+++.. +++.|+++++||++|+|+.|+.|++...++..+|..|.. ...++++|.|||++.+... ++++
T Consensus 2 ~vfKv~~~~~~~~~Gkla~~Rv~sG~l~~g~~v~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~v~gl----~~~~ 77 (85)
T cd03689 2 FVFKIQANMDPAHRDRIAFVRVCSGKFERGMKVKHVRLGKEVRLSNPQQFFAQDRETVDEAYPGDIIGLVNP----GNFQ 77 (85)
T ss_pred EEEEEecccCCCCCcEEEEEEEECCEEcCCCEEEEcCCCCEEEeeEeEEEecCCeeEcCEECCCCEEEEECC----CCcc
Confidence 4677777 899999999999999999999999877666677777754 5678899999999999885 7788
Q ss_pred eeccccC
Q psy15197 477 VGFLLSE 483 (902)
Q Consensus 477 kG~vL~~ 483 (902)
.|++|++
T Consensus 78 ~Gdtl~~ 84 (85)
T cd03689 78 IGDTLTE 84 (85)
T ss_pred ccCEeeC
Confidence 9999873
No 334
>KOG0074|consensus
Probab=98.52 E-value=4e-07 Score=86.85 Aligned_cols=112 Identities=26% Similarity=0.305 Sum_probs=72.9
Q ss_pred EEEEECC-eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh---CCCeEEEEEe
Q psy15197 244 SQFETKT-KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL---GVNQLGVVIN 319 (902)
Q Consensus 244 ~~~~~~~-~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~---~i~~iIVviN 319 (902)
..+++.+ ..++++|..|++....-+..++...|.+|+|||+++.-+ |+ ...++...++... .+| +.|+.|
T Consensus 54 k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~kr---fe--E~~~el~ELleeeKl~~vp-vlIfan 127 (185)
T KOG0074|consen 54 KKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKR---FE--EISEELVELLEEEKLAEVP-VLIFAN 127 (185)
T ss_pred EEEeecCcEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHh---HH--HHHHHHHHHhhhhhhhccc-eeehhh
Confidence 3455554 899999999999998899999999999999999876521 11 1122223333332 334 568899
Q ss_pred cCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 320 KLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 320 KiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
|.|+... ...+++... +...++....+.|-.+||++++|+..
T Consensus 128 kQdllta--a~~eeia~k----lnl~~lrdRswhIq~csals~eg~~d 169 (185)
T KOG0074|consen 128 KQDLLTA--AKVEEIALK----LNLAGLRDRSWHIQECSALSLEGSTD 169 (185)
T ss_pred hhHHHhh--cchHHHHHh----cchhhhhhceEEeeeCccccccCccC
Confidence 9998641 112222221 11222333456788999999999987
No 335
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.51 E-value=8.1e-07 Score=77.04 Aligned_cols=80 Identities=35% Similarity=0.496 Sum_probs=70.3
Q ss_pred ceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEcc--CCcEEEEEEEEEceEeeeeeccCCeEEEeeeccccccceee
Q psy15197 401 LRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQP--QNEVTTVKAVYVDEMSVSAAYAGDNVSVTLLNYDQQNVSVG 478 (902)
Q Consensus 401 l~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p--~~~~~~V~sI~~~~~~v~~a~aGdiv~I~l~~~~~~~i~kG 478 (902)
+++.|.+++.+++.|++++|+|.+|+|++|+.+.+.+ .....+|.+|+..+.+++++.||+++++.+.... +++.|
T Consensus 1 ~~~~v~~~~~~~~~g~v~~~rv~~G~l~~g~~v~~~~~~~~~~~~i~~i~~~~~~~~~~~aG~~~~~~~~~~~--~~~~g 78 (83)
T cd01342 1 LRALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGGGGVKGKVKSLKRFKGEVDEAVAGDIVGIVLKDKD--DIKIG 78 (83)
T ss_pred CeeEEEEEEEeCCceEEEEEEEeeCEEecCCEEEEecCCceeEEEEeEeEecCceeceecCCCEEEEEEcccc--ccCCC
Confidence 4688999999999999999999999999999999998 6667889999988889999999999999886332 68888
Q ss_pred cccc
Q psy15197 479 FLLS 482 (902)
Q Consensus 479 ~vL~ 482 (902)
++|+
T Consensus 79 ~~l~ 82 (83)
T cd01342 79 DTLT 82 (83)
T ss_pred CEec
Confidence 8775
No 336
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=98.50 E-value=8.9e-07 Score=79.45 Aligned_cols=78 Identities=22% Similarity=0.373 Sum_probs=65.0
Q ss_pred ceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCc---EEEEEEEEE----ceEeeeeeccCCeEEEeeeccccc
Q psy15197 401 LRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNE---VTTVKAVYV----DEMSVSAAYAGDNVSVTLLNYDQQ 473 (902)
Q Consensus 401 l~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~---~~~V~sI~~----~~~~v~~a~aGdiv~I~l~~~~~~ 473 (902)
|++.|+++..+++.|+++++||++|+|++||.|.+...+. ..+|.+|.. ...+++++.|||++.+... +
T Consensus 1 ~~~~vfk~~~d~~~g~i~~~Rv~sG~l~~g~~v~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~i~gl----~ 76 (86)
T cd03691 1 LQMLVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKRVEVEEAEAGDIVAIAGI----E 76 (86)
T ss_pred CeEEEEEeEecCCCCeEEEEEEEeCEEcCCCEEEEEcCCCCEEEEEEeeEeeeeCCCeeECcEECCCCEEEEECC----C
Confidence 5789999999999999999999999999999998765532 356777743 5578999999999988775 6
Q ss_pred cceeecccc
Q psy15197 474 NVSVGFLLS 482 (902)
Q Consensus 474 ~i~kG~vL~ 482 (902)
++..|++|+
T Consensus 77 ~~~~Gdtl~ 85 (86)
T cd03691 77 DITIGDTIC 85 (86)
T ss_pred CCcccceec
Confidence 788888875
No 337
>KOG0448|consensus
Probab=98.50 E-value=2.6e-06 Score=99.68 Aligned_cols=99 Identities=18% Similarity=0.149 Sum_probs=59.9
Q ss_pred EEEEEeCCCccc---hHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHH-HHHHHHhCCCeEEEEEecCCCCCch
Q psy15197 252 YITLLDAPGHKD---FIPNMITGATQADVALLVVDATRGEFETGFESGGQTREH-ALLVRSLGVNQLGVVINKLDTVSWS 327 (902)
Q Consensus 252 ~i~lIDTPG~~d---f~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~-l~~l~~~~i~~iIVviNKiDl~~~~ 327 (902)
.+.+||.||..- +-..+......+|++|||+.+....+ +++.+ +..... +.|.|.|+.||+|.....
T Consensus 207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt--------~sek~Ff~~vs~-~KpniFIlnnkwDasase 277 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLT--------LSEKQFFHKVSE-EKPNIFILNNKWDASASE 277 (749)
T ss_pred cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhH--------HHHHHHHHHhhc-cCCcEEEEechhhhhccc
Confidence 689999999754 55555666678999999999976643 33333 333333 467788899999986533
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCceEecCCCc
Q psy15197 328 QDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGL 360 (902)
Q Consensus 328 ~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~ 360 (902)
++..+.+.+.+. -|+-.......--++++||+
T Consensus 278 ~ec~e~V~~Qi~-eL~v~~~~eA~DrvfFVS~~ 309 (749)
T KOG0448|consen 278 PECKEDVLKQIH-ELSVVTEKEAADRVFFVSAK 309 (749)
T ss_pred HHHHHHHHHHHH-hcCcccHhhhcCeeEEEecc
Confidence 333444444432 11111111112246788875
No 338
>KOG1490|consensus
Probab=98.48 E-value=5.7e-07 Score=101.59 Aligned_cols=117 Identities=16% Similarity=0.205 Sum_probs=69.4
Q ss_pred EEEECCeEEEEEeCCCccc--------hHHHHHHHHH-HcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEE
Q psy15197 245 QFETKTKYITLLDAPGHKD--------FIPNMITGAT-QADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLG 315 (902)
Q Consensus 245 ~~~~~~~~i~lIDTPG~~d--------f~~~~~~~l~-~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iI 315 (902)
++.++-..+.+|||||+-+ .-..++.++. .--++|++.|.++. +|+++..|..-.-.+--...-+++|
T Consensus 209 H~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~---CGySva~QvkLfhsIKpLFaNK~~I 285 (620)
T KOG1490|consen 209 HLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEM---CGYSVAAQVKLYHSIKPLFANKVTI 285 (620)
T ss_pred hhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhh---hCCCHHHHHHHHHHhHHHhcCCceE
Confidence 3444556899999999876 1112333333 23478899999865 5677666654332222222234578
Q ss_pred EEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCCC
Q psy15197 316 VVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQ 370 (902)
Q Consensus 316 VviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~ 370 (902)
+|+||+|+..- +.+.+-..++.+.+... .+++++..|+.+.+|+..+..
T Consensus 286 lvlNK~D~m~~--edL~~~~~~ll~~~~~~----~~v~v~~tS~~~eegVm~Vrt 334 (620)
T KOG1490|consen 286 LVLNKIDAMRP--EDLDQKNQELLQTIIDD----GNVKVVQTSCVQEEGVMDVRT 334 (620)
T ss_pred EEeecccccCc--cccCHHHHHHHHHHHhc----cCceEEEecccchhceeeHHH
Confidence 99999998641 11222222222222222 236899999999999987443
No 339
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=98.48 E-value=8.7e-07 Score=78.69 Aligned_cols=76 Identities=14% Similarity=0.097 Sum_probs=64.6
Q ss_pred ceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCcEEEEEEEEE----ceEeeeeeccCCeEEEeeeccccccce
Q psy15197 401 LRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYV----DEMSVSAAYAGDNVSVTLLNYDQQNVS 476 (902)
Q Consensus 401 l~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~----~~~~v~~a~aGdiv~I~l~~~~~~~i~ 476 (902)
+...|+++..++. |.++++||++|+|++||.|.+...+...+|.+|.. ...+++++.|||++++... + ++
T Consensus 1 ~~a~vfK~~~~~~-G~i~~~Rv~sG~lk~gd~v~~~~~~~~~~v~~i~~~~g~~~~~~~~~~aGdI~~i~g~----~-~~ 74 (81)
T cd04091 1 FVGLAFKLEEGRF-GQLTYMRIYQGKLKKGDTIYNVRTGKKVRVPRLVRMHSNEMEEVEEAGAGDICAIFGI----D-CA 74 (81)
T ss_pred CeEEEEEeecCCC-CCEEEEEEecCEEcCCCEEEEcCCCCEEEEeEEEEEeCCCceEccEECCCCEEEEECC----C-cc
Confidence 3567889988887 99999999999999999999988777778888764 3678999999999998774 4 88
Q ss_pred eecccc
Q psy15197 477 VGFLLS 482 (902)
Q Consensus 477 kG~vL~ 482 (902)
.|++|+
T Consensus 75 ~Gdtl~ 80 (81)
T cd04091 75 SGDTFT 80 (81)
T ss_pred cCCEec
Confidence 999885
No 340
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.46 E-value=3.8e-06 Score=99.11 Aligned_cols=75 Identities=13% Similarity=0.091 Sum_probs=44.9
Q ss_pred EEEECCeEEEEEeCCCccch------HHHHH----HHHH--HcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh-C-
Q psy15197 245 QFETKTKYITLLDAPGHKDF------IPNMI----TGAT--QADVALLVVDATRGEFETGFESGGQTREHALLVRSL-G- 310 (902)
Q Consensus 245 ~~~~~~~~i~lIDTPG~~df------~~~~~----~~l~--~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~-~- 310 (902)
...+.+..++||||||+.+. ..... ..+. .+|++|+|+..+.... .......+..+... |
T Consensus 160 ~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~------D~eD~~aLr~Iq~lFG~ 233 (763)
T TIGR00993 160 EGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTR------DSNDLPLLRTITDVLGP 233 (763)
T ss_pred EEEECCceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccc------cHHHHHHHHHHHHHhCH
Confidence 34567889999999998862 12222 2333 3788888887643211 11222334333322 2
Q ss_pred --CCeEEEEEecCCCCC
Q psy15197 311 --VNQLGVVINKLDTVS 325 (902)
Q Consensus 311 --i~~iIVviNKiDl~~ 325 (902)
...+|||+|..|...
T Consensus 234 ~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 234 SIWFNAIVTLTHAASAP 250 (763)
T ss_pred HhHcCEEEEEeCCccCC
Confidence 356889999999874
No 341
>KOG0077|consensus
Probab=98.43 E-value=1.4e-06 Score=85.54 Aligned_cols=75 Identities=21% Similarity=0.119 Sum_probs=54.6
Q ss_pred EEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHH---HHHh-CCCeEEEEEe
Q psy15197 244 SQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALL---VRSL-GVNQLGVVIN 319 (902)
Q Consensus 244 ~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~---l~~~-~i~~iIVviN 319 (902)
..+.+.+..++-+|..||..-..-+..++..+|++|++||+-+... -...++.+.. ..++ .+| ++|..|
T Consensus 57 E~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er------~~es~~eld~ll~~e~la~vp-~lilgn 129 (193)
T KOG0077|consen 57 EELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQER------FAESKKELDALLSDESLATVP-FLILGN 129 (193)
T ss_pred HHheecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHH------hHHHHHHHHHHHhHHHHhcCc-ceeecc
Confidence 3456678899999999999988889999999999999999976422 1122333222 2222 455 568999
Q ss_pred cCCCCC
Q psy15197 320 KLDTVS 325 (902)
Q Consensus 320 KiDl~~ 325 (902)
|+|.+.
T Consensus 130 KId~p~ 135 (193)
T KOG0077|consen 130 KIDIPY 135 (193)
T ss_pred cccCCC
Confidence 999975
No 342
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.42 E-value=1.8e-06 Score=90.05 Aligned_cols=94 Identities=17% Similarity=0.215 Sum_probs=54.2
Q ss_pred CeEEEEEeCCCcc--chHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCch
Q psy15197 250 TKYITLLDAPGHK--DFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWS 327 (902)
Q Consensus 250 ~~~i~lIDTPG~~--df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~ 327 (902)
....++|+|.|.. .... -..+|.+|+|+|+..+.. ..... ......-- ++++||+|+.+..
T Consensus 91 ~~D~iiIEt~G~~l~~~~~-----~~l~~~~i~vvD~~~~~~--------~~~~~---~~qi~~ad-~~~~~k~d~~~~~ 153 (199)
T TIGR00101 91 PLEMVFIESGGDNLSATFS-----PELADLTIFVIDVAAGDK--------IPRKG---GPGITRSD-LLVINKIDLAPMV 153 (199)
T ss_pred CCCEEEEECCCCCcccccc-----hhhhCcEEEEEEcchhhh--------hhhhh---HhHhhhcc-EEEEEhhhccccc
Confidence 3457789999932 2111 123688999999987621 10111 11111111 4899999997421
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 328 QDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 328 ~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
...++.+.+.+..+ .. ..+++++||++|+|+++
T Consensus 154 ~~~~~~~~~~~~~~----~~---~~~i~~~Sa~~g~gi~e 186 (199)
T TIGR00101 154 GADLGVMERDAKKM----RG---EKPFIFTNLKTKEGLDT 186 (199)
T ss_pred cccHHHHHHHHHHh----CC---CCCEEEEECCCCCCHHH
Confidence 22233333333322 21 35899999999999998
No 343
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.41 E-value=1.9e-07 Score=101.77 Aligned_cols=96 Identities=15% Similarity=0.187 Sum_probs=53.5
Q ss_pred CCeEEEEEeCCCcc-chHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCch
Q psy15197 249 KTKYITLLDAPGHK-DFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWS 327 (902)
Q Consensus 249 ~~~~i~lIDTPG~~-df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~ 327 (902)
.+..+.||++-|.- . ....-+ ..+.-+.|++..++.- +...+-.. ..... ++|+||+|++++.
T Consensus 183 ~~~d~liIEnvGnLvc---Pa~fdl-ge~~~v~vlsV~eg~d--------kplKyp~~---f~~AD-IVVLNKiDLl~~~ 246 (290)
T PRK10463 183 DDNGILFIENVGNLVC---PASFDL-GEKHKVAVLSVTEGED--------KPLKYPHM---FAAAS-LMLLNKVDLLPYL 246 (290)
T ss_pred cCCcEEEEECCCCccC---CCccch-hhceeEEEEECccccc--------cchhccch---hhcCc-EEEEEhHHcCccc
Confidence 45578899999851 1 000011 1244567888876621 11111111 12233 4899999998632
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 328 QDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 328 ~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
...++.+.+.+.... ...+++++||++|+|+++
T Consensus 247 ~~dle~~~~~lr~ln-------p~a~I~~vSA~tGeGld~ 279 (290)
T PRK10463 247 NFDVEKCIACAREVN-------PEIEIILISATSGEGMDQ 279 (290)
T ss_pred HHHHHHHHHHHHhhC-------CCCcEEEEECCCCCCHHH
Confidence 333444444443322 125899999999999998
No 344
>KOG1532|consensus
Probab=98.41 E-value=3e-06 Score=89.53 Aligned_cols=115 Identities=20% Similarity=0.231 Sum_probs=60.9
Q ss_pred CeEEEEEeCCCccchHH------HHHHHH--HHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecC
Q psy15197 250 TKYITLLDAPGHKDFIP------NMITGA--TQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKL 321 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~------~~~~~l--~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKi 321 (902)
...+.||||||+..... -...++ .-.-++++|||......... .-........++.+.++| +||+.||.
T Consensus 115 ~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~t--FMSNMlYAcSilyktklp-~ivvfNK~ 191 (366)
T KOG1532|consen 115 EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTT--FMSNMLYACSILYKTKLP-FIVVFNKT 191 (366)
T ss_pred ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchh--HHHHHHHHHHHHHhccCC-eEEEEecc
Confidence 35689999999987111 111222 23568889999764311000 001111222444455666 67999999
Q ss_pred CCCCch--------HHHHHHHHHH-----HHHhhhhcCCC----CCCceEecCCCccCCCCCC
Q psy15197 322 DTVSWS--------QDRFQEIVTK-----LGAFLKQAGFR----DSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 322 Dl~~~~--------~~~~~~i~~~-----l~~~l~~~~~~----~~~~~ii~iSA~~G~gI~~ 367 (902)
|+.+.. -+.+++.+++ +..+...+.+. ..++..+.+|+.+|.|.++
T Consensus 192 Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~dd 254 (366)
T KOG1532|consen 192 DVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDD 254 (366)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHH
Confidence 987522 1223333322 00111111000 1245689999999999998
No 345
>KOG1486|consensus
Probab=98.38 E-value=2.1e-06 Score=89.45 Aligned_cols=50 Identities=32% Similarity=0.368 Sum_probs=41.1
Q ss_pred EEeeeEEEEEECCeEEEEEeCCCccc-------hHHHHHHHHHHcCEEEEEEECCCC
Q psy15197 238 TMDVGQSQFETKTKYITLLDAPGHKD-------FIPNMITGATQADVALLVVDATRG 287 (902)
Q Consensus 238 Tid~~~~~~~~~~~~i~lIDTPG~~d-------f~~~~~~~l~~aD~aIlVVDa~~g 287 (902)
|...+...+++++-.|.++|.||+.. .-..+++..+.||++++|+||+..
T Consensus 96 TLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArtaDlilMvLDatk~ 152 (364)
T KOG1486|consen 96 TLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVARTADLILMVLDATKS 152 (364)
T ss_pred EEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeecccEEEEEecCCcc
Confidence 55555666899999999999999876 345577777889999999999976
No 346
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.37 E-value=1e-06 Score=96.01 Aligned_cols=36 Identities=17% Similarity=0.205 Sum_probs=28.4
Q ss_pred eEEEEEeCCCccc-------hHHHHHHHHHHcCEEEEEEECCC
Q psy15197 251 KYITLLDAPGHKD-------FIPNMITGATQADVALLVVDATR 286 (902)
Q Consensus 251 ~~i~lIDTPG~~d-------f~~~~~~~l~~aD~aIlVVDa~~ 286 (902)
..+.|+||||..+ ........++.+|++++|||+..
T Consensus 62 ~~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 62 ATIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred eEEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCcC
Confidence 3699999999765 33356667789999999999863
No 347
>KOG0083|consensus
Probab=98.36 E-value=3.3e-07 Score=86.38 Aligned_cols=102 Identities=20% Similarity=0.210 Sum_probs=68.0
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh---CCCeEEEEEecCCCCCc
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL---GVNQLGVVINKLDTVSW 326 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~---~i~~iIVviNKiDl~~~ 326 (902)
..++.+|||+|+++|..-+..+.+.+|+.+|+.|.... ++|+ .-+..+..+.+. .+. +.++.||+|+...
T Consensus 46 kvklqiwdtagqerfrsvt~ayyrda~allllydiank---asfd---n~~~wlsei~ey~k~~v~-l~llgnk~d~a~e 118 (192)
T KOG0083|consen 46 KVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANK---ASFD---NCQAWLSEIHEYAKEAVA-LMLLGNKCDLAHE 118 (192)
T ss_pred EEEEEEeeccchHHHhhhhHhhhcccceeeeeeecccc---hhHH---HHHHHHHHHHHHHHhhHh-Hhhhccccccchh
Confidence 45789999999999999999999999999999998765 2332 112222222222 222 4478999998631
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 327 SQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 327 ~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+.-. .++-+.+.+..++ |+...||++|.|++.
T Consensus 119 ---r~v~-~ddg~kla~~y~i-----pfmetsaktg~nvd~ 150 (192)
T KOG0083|consen 119 ---RAVK-RDDGEKLAEAYGI-----PFMETSAKTGFNVDL 150 (192)
T ss_pred ---hccc-cchHHHHHHHHCC-----CceeccccccccHhH
Confidence 1000 0111223344444 999999999999986
No 348
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.32 E-value=6.4e-06 Score=93.54 Aligned_cols=100 Identities=28% Similarity=0.364 Sum_probs=72.9
Q ss_pred CCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchH
Q psy15197 249 KTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQ 328 (902)
Q Consensus 249 ~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~ 328 (902)
+.++|+|+.|| +=+..++...+.||++||+||++-| +| -.|.+.+.++...|.|.++.|++.+|+-. ++
T Consensus 111 K~RRiTflEcp---~Dl~~miDvaKIaDLVlLlIdgnfG-fE------METmEFLnil~~HGmPrvlgV~ThlDlfk-~~ 179 (1077)
T COG5192 111 KTRRITFLECP---SDLHQMIDVAKIADLVLLLIDGNFG-FE------METMEFLNILISHGMPRVLGVVTHLDLFK-NP 179 (1077)
T ss_pred ceeEEEEEeCh---HHHHHHHhHHHhhheeEEEeccccC-ce------ehHHHHHHHHhhcCCCceEEEEeeccccc-Ch
Confidence 56789999999 3356778888999999999999977 22 47888999999999999999999999864 34
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCceEecCCCcc
Q psy15197 329 DRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLT 361 (902)
Q Consensus 329 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~ 361 (902)
..+..+.+.+..-+..--+ ..+.++.+|...
T Consensus 180 stLr~~KKrlkhRfWtEiy--qGaKlFylsgV~ 210 (1077)
T COG5192 180 STLRSIKKRLKHRFWTEIY--QGAKLFYLSGVE 210 (1077)
T ss_pred HHHHHHHHHHhhhHHHHHc--CCceEEEecccc
Confidence 4556665555433322222 124567777653
No 349
>KOG2486|consensus
Probab=98.31 E-value=2.2e-06 Score=90.94 Aligned_cols=109 Identities=17% Similarity=0.092 Sum_probs=68.8
Q ss_pred CeEEEEEeCCCcc----------chHHHHHHHHH---HcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEE
Q psy15197 250 TKYITLLDAPGHK----------DFIPNMITGAT---QADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGV 316 (902)
Q Consensus 250 ~~~i~lIDTPG~~----------df~~~~~~~l~---~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIV 316 (902)
+..+.++|.||+. ++.+.+..++. .-=.+.+++|++.+ +.+.+...+.++.+.++| +.+
T Consensus 182 ~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~-------i~~~D~~~i~~~ge~~VP-~t~ 253 (320)
T KOG2486|consen 182 GKSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVP-------IQPTDNPEIAWLGENNVP-MTS 253 (320)
T ss_pred cceEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCC-------CCCCChHHHHHHhhcCCC-eEE
Confidence 6789999999932 25555555554 33467788999887 556788889999999988 559
Q ss_pred EEecCCCCCchH----HHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCC
Q psy15197 317 VINKLDTVSWSQ----DRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 368 (902)
Q Consensus 317 viNKiDl~~~~~----~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~ 368 (902)
|+||||....-. .....+...+..+.. ++-....|++.+|+.++.|++.+
T Consensus 254 vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~--~~f~~~~Pw~~~Ssvt~~Grd~L 307 (320)
T KOG2486|consen 254 VFTKCDKQKKVKRTGKKPGLNIKINFQGLIR--GVFLVDLPWIYVSSVTSLGRDLL 307 (320)
T ss_pred eeehhhhhhhccccccCccccceeehhhccc--cceeccCCceeeecccccCceee
Confidence 999999753100 000011111111111 11122347788999999999983
No 350
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=98.31 E-value=2.2e-06 Score=74.48 Aligned_cols=68 Identities=26% Similarity=0.390 Sum_probs=59.1
Q ss_pred eEEEEEEEEeeEeeCCCEEEEcc--CCcE---EEEEEEEEceEeeeeeccCCeEEEeeecccccc-ceeecccc
Q psy15197 415 GYCIAGRVETGVILAGEKVMVQP--QNEV---TTVKAVYVDEMSVSAAYAGDNVSVTLLNYDQQN-VSVGFLLS 482 (902)
Q Consensus 415 G~V~~GrV~sG~Lk~Gd~v~l~p--~~~~---~~V~sI~~~~~~v~~a~aGdiv~I~l~~~~~~~-i~kG~vL~ 482 (902)
|+|++|||++|+|++||.|.+.| ++.. .+|++|+.++...+++.+|+.+++.+.....++ +++|++|+
T Consensus 1 G~v~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~i~~Gdtl~ 74 (74)
T PF03144_consen 1 GRVATGRVYSGTLKKGDKVRVLPNGTGKKGQVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGLNDAIRRGDTLT 74 (74)
T ss_dssp EEEEEEEEEESEEETTEEEEEESTTTTEECEEEEEEEEEETTEEESEEETTEEEEEEEESSSGCSCSSTTEEEE
T ss_pred CEEEEEEEEEeEEcCCCEEEECccCCcceeeeeecccccccccCccEeCCceeeEEEEEEcCCCCCcCcCCEEC
Confidence 78999999999999999999955 4344 899999999888888889998888888777788 89999885
No 351
>KOG4252|consensus
Probab=98.30 E-value=4.5e-07 Score=89.64 Aligned_cols=104 Identities=21% Similarity=0.101 Sum_probs=69.0
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHH-HHHHh-CCCeEEEEEecCCCCCch
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHAL-LVRSL-GVNQLGVVINKLDTVSWS 327 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~-~l~~~-~i~~iIVviNKiDl~~~~ 327 (902)
+..+.+|||+|+++|-.-+..+++.|.+.+||++.++. .+|+ .+.+... ..++. .+| .++|-||||+++.+
T Consensus 68 dvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr---~SFe---a~~~w~~kv~~e~~~IP-tV~vqNKIDlveds 140 (246)
T KOG4252|consen 68 DVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDR---YSFE---ATLEWYNKVQKETERIP-TVFVQNKIDLVEDS 140 (246)
T ss_pred HHHHHHHHhccchhHHHHHHHHhccccceEEEEecccH---HHHH---HHHHHHHHHHHHhccCC-eEEeeccchhhHhh
Confidence 55788999999999999999999999999999998875 2232 2222222 22233 455 56899999998632
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCC
Q psy15197 328 QDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 369 (902)
Q Consensus 328 ~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~ 369 (902)
.-.- .+++.+.+.+.. .++.+|++...|+..++
T Consensus 141 ~~~~----~evE~lak~l~~-----RlyRtSvked~NV~~vF 173 (246)
T KOG4252|consen 141 QMDK----GEVEGLAKKLHK-----RLYRTSVKEDFNVMHVF 173 (246)
T ss_pred hcch----HHHHHHHHHhhh-----hhhhhhhhhhhhhHHHH
Confidence 2111 222223333322 46789999998888743
No 352
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.25 E-value=5.5e-05 Score=83.03 Aligned_cols=64 Identities=16% Similarity=0.141 Sum_probs=39.7
Q ss_pred HcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCC
Q psy15197 274 QADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGF 347 (902)
Q Consensus 274 ~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~ 347 (902)
..|++|+.|+++... +.+.+.+.++.+.. .-.+|=||.|.|... .+++..++..+...++..+.
T Consensus 113 RVH~cLYfI~pt~~~------L~~~Di~~mk~Ls~--~vNvIPvIaKaD~lt--~~el~~~k~~i~~~l~~~~I 176 (281)
T PF00735_consen 113 RVHACLYFIPPTGHG------LKPLDIEFMKRLSK--RVNVIPVIAKADTLT--PEELQAFKQRIREDLEENNI 176 (281)
T ss_dssp -EEEEEEEE-TTSSS------S-HHHHHHHHHHTT--TSEEEEEESTGGGS---HHHHHHHHHHHHHHHHHTT-
T ss_pred CcceEEEEEcCCCcc------chHHHHHHHHHhcc--cccEEeEEecccccC--HHHHHHHHHHHHHHHHHcCc
Confidence 368999999987431 22344444443332 345778999999875 56677777778777776654
No 353
>PRK11249 katE hydroperoxidase II; Provisional
Probab=98.25 E-value=4.8e-07 Score=109.29 Aligned_cols=99 Identities=30% Similarity=0.443 Sum_probs=87.5
Q ss_pred cccCCCCCCCCccccccccCCCCCCCCcchhhhhccccccCCCCccchhcccCCCCccccccchhhhccCCCCCCCCCcc
Q psy15197 92 VDTTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFEDRETIIKTIGPHGPVPLED 171 (902)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (902)
..||.+|.++...+--++.++.||+++||+.++++|.||++|+||||++|++|.+|+|+|..+..+-
T Consensus 76 ~~tt~~G~pv~~~~~sl~~g~~Gp~ll~D~~l~ekl~hFdrEriPER~vHAkG~~a~G~F~~t~~~s------------- 142 (752)
T PRK11249 76 ALTTNQGVRIADDQNSLRAGSRGPSLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQPYKSLS------------- 142 (752)
T ss_pred ceecCCCeecCCcccceecCCCCCchhhhHHHHHhhcccccccCchhheecccceEEEEEEECccHH-------------
Confidence 4588999999999999999999999999999999999999999999999999999999999876652
Q ss_pred cccccccccccCCCCcccccccCCCCccccce
Q psy15197 172 TYYLDKLFHFSGERNPERVVHAKGGGAFGYFE 203 (902)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (902)
.|.-..+|...|++.|-.++.+-+.|..+..+
T Consensus 143 ~~t~A~~f~~~g~~tPv~~RFStv~G~~gs~D 174 (752)
T PRK11249 143 DITKAAFLQDPGKITPVFVRFSTVQGPRGSAD 174 (752)
T ss_pred HhhhcccccCCCceeeEEEecccCCCCCCCCC
Confidence 25556666666889999999999999888655
No 354
>KOG0081|consensus
Probab=98.24 E-value=5.3e-06 Score=80.66 Aligned_cols=102 Identities=21% Similarity=0.182 Sum_probs=71.5
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh---CCCeEEEEEecCCCCCch
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL---GVNQLGVVINKLDTVSWS 327 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~---~i~~iIVviNKiDl~~~~ 327 (902)
..+.+|||+|+++|...+....+.|-+.||++|.+.. .+|- ..+..+..++.. .-|-||++.||.|+.+..
T Consensus 67 ihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~e---qSFL---nvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R 140 (219)
T KOG0081|consen 67 IHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSE---QSFL---NVRNWLSQLQTHAYCENPDIVLCGNKADLEDQR 140 (219)
T ss_pred EEEeeeccccHHHHHHHHHHHHHhhccceEEEeccch---HHHH---HHHHHHHHHHHhhccCCCCEEEEcCccchhhhh
Confidence 4688999999999999999999999999999999865 1111 112222222221 236788999999996411
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 328 QDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 328 ~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
. --..+...+..++++ |++.+||-+|.|+++
T Consensus 141 ~----Vs~~qa~~La~kygl-----PYfETSA~tg~Nv~k 171 (219)
T KOG0081|consen 141 V----VSEDQAAALADKYGL-----PYFETSACTGTNVEK 171 (219)
T ss_pred h----hhHHHHHHHHHHhCC-----CeeeeccccCcCHHH
Confidence 1 111233344556665 999999999999987
No 355
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.21 E-value=1.6e-05 Score=88.52 Aligned_cols=36 Identities=14% Similarity=0.212 Sum_probs=28.5
Q ss_pred eEEEEEeCCCccc-------hHHHHHHHHHHcCEEEEEEECCC
Q psy15197 251 KYITLLDAPGHKD-------FIPNMITGATQADVALLVVDATR 286 (902)
Q Consensus 251 ~~i~lIDTPG~~d-------f~~~~~~~l~~aD~aIlVVDa~~ 286 (902)
..+.|+|.+|+.+ .-.+-+.-++.+|+++.|||+..
T Consensus 67 ~~ve~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 67 APVEFVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred eeeEEEEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 3688999999876 34445567889999999999973
No 356
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=98.20 E-value=1e-05 Score=73.87 Aligned_cols=76 Identities=26% Similarity=0.338 Sum_probs=60.6
Q ss_pred eEEEeeEEeeC-CCeEEEEEEEEeeEeeCCCEEEEcc---------CCcEEEEEEEEE----ceEeeeeeccCCeEEEee
Q psy15197 402 RMSVSDIYKST-GSGYCIAGRVETGVILAGEKVMVQP---------QNEVTTVKAVYV----DEMSVSAAYAGDNVSVTL 467 (902)
Q Consensus 402 ~~~I~~i~~v~-g~G~V~~GrV~sG~Lk~Gd~v~l~p---------~~~~~~V~sI~~----~~~~v~~a~aGdiv~I~l 467 (902)
.+.|+++...+ +.|+++++||++|+|+.|+.+++.. .....++..+.. ...++++|.|||+|.|..
T Consensus 2 v~~v~Ki~~~~~~~g~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~g 81 (93)
T cd03700 2 VMYVTKMVPTPDKGGFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLIVG 81 (93)
T ss_pred eEEEEeCeECCCCCEEEEEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCCEEEEEC
Confidence 46788898899 9999999999999999999998765 122356667754 567899999999999987
Q ss_pred eccccccceeeccc
Q psy15197 468 LNYDQQNVSVGFLL 481 (902)
Q Consensus 468 ~~~~~~~i~kG~vL 481 (902)
. ++++.|++.
T Consensus 82 ~----~~~~~g~~~ 91 (93)
T cd03700 82 L----DQLKSGTTA 91 (93)
T ss_pred C----ccCceEeEe
Confidence 4 456677654
No 357
>KOG1547|consensus
Probab=98.19 E-value=8.5e-05 Score=77.29 Aligned_cols=38 Identities=29% Similarity=0.381 Sum_probs=27.7
Q ss_pred HHHHHHHHh-cCCCcceEEEEEecCCCChhHHHhHHHHh
Q psy15197 12 KIEEYTREQ-AGGKGRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 12 ~~~~~~~~~-~~~~~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.|.+.++.. ++.-=.+||.|||..|.|||||+|.|...
T Consensus 31 tI~~Qm~~k~mk~GF~FNIMVVgqSglgkstlinTlf~s 69 (336)
T KOG1547|consen 31 TIIEQMRKKTMKTGFDFNIMVVGQSGLGKSTLINTLFKS 69 (336)
T ss_pred HHHHHHHHHHHhccCceEEEEEecCCCCchhhHHHHHHH
Confidence 344444433 33334789999999999999999999743
No 358
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.19 E-value=5.5e-06 Score=82.77 Aligned_cols=38 Identities=18% Similarity=0.403 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhcCCCcceEEEEEecCCCChhHHHhHHHH
Q psy15197 10 LKKIEEYTREQAGGKGRLHLVVIGHVDAGKSTLMGHLLY 48 (902)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~v~v~G~~~~GKstL~~~ll~ 48 (902)
++.+.++.+. ......++|+++|.+|+|||||+|+|+.
T Consensus 87 ~~~l~~~~~~-~~~~~~~~v~~~G~~nvGKStliN~l~~ 124 (157)
T cd01858 87 IQLLRQFSKL-HSDKKQISVGFIGYPNVGKSSIINTLRS 124 (157)
T ss_pred HHHHHHHHhh-hccccceEEEEEeCCCCChHHHHHHHhc
Confidence 4444444432 2223468999999999999999999974
No 359
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.19 E-value=5e-06 Score=84.59 Aligned_cols=93 Identities=18% Similarity=0.290 Sum_probs=52.3
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcC-EEEEEEECCCCccccccCCchhhHH-HHHHHHHhCCCeEEEEEecCCCCCchH
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQAD-VALLVVDATRGEFETGFESGGQTRE-HALLVRSLGVNQLGVVINKLDTVSWSQ 328 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD-~aIlVVDa~~g~~E~~~~~~~qt~~-~l~~l~~~~i~~iIVviNKiDl~~~~~ 328 (902)
..+.||.+.| ...... .....| .-|+|||.++|.- .-+. .-.+.+ .- ++||||.|++++-.
T Consensus 97 ~Dll~iEs~G--NL~~~~--sp~L~d~~~v~VidvteGe~--------~P~K~gP~i~~----aD-llVInK~DLa~~v~ 159 (202)
T COG0378 97 LDLLFIESVG--NLVCPF--SPDLGDHLRVVVIDVTEGED--------IPRKGGPGIFK----AD-LLVINKTDLAPYVG 159 (202)
T ss_pred CCEEEEecCc--ceeccc--CcchhhceEEEEEECCCCCC--------CcccCCCceeE----ee-EEEEehHHhHHHhC
Confidence 4578888888 211111 112335 8999999998831 0010 000011 12 48999999975322
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 329 DRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 329 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
..++...+... +.. .+.||+++|+++|+|+++
T Consensus 160 ~dlevm~~da~----~~n---p~~~ii~~n~ktg~G~~~ 191 (202)
T COG0378 160 ADLEVMARDAK----EVN---PEAPIIFTNLKTGEGLDE 191 (202)
T ss_pred ccHHHHHHHHH----HhC---CCCCEEEEeCCCCcCHHH
Confidence 22233333222 121 245999999999999987
No 360
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.13 E-value=2.6e-05 Score=83.14 Aligned_cols=96 Identities=21% Similarity=0.219 Sum_probs=55.7
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhH--HHHHHHHHhCCCeEEEEEecCCCCCch
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTR--EHALLVRSLGVNQLGVVINKLDTVSWS 327 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~--~~l~~l~~~~i~~iIVviNKiDl~~~~ 327 (902)
++.+.||.|-|.-.-- ......+|.+++|+-...|- .-|.. -++.+ .-+ +||||.|+..
T Consensus 121 G~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD-------~iQ~~KaGimEi------aDi-~vVNKaD~~g-- 181 (266)
T PF03308_consen 121 GFDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGD-------EIQAIKAGIMEI------ADI-FVVNKADRPG-- 181 (266)
T ss_dssp T-SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCC-------CCCTB-TTHHHH-------SE-EEEE--SHHH--
T ss_pred CCCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCcc-------HHHHHhhhhhhh------ccE-EEEeCCChHH--
Confidence 6789999999864321 22356799999999887662 12221 12222 224 8999999643
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCC--CceEecCCCccCCCCCC
Q psy15197 328 QDRFQEIVTKLGAFLKQAGFRDS--DIEYVPCSGLTGENLTT 367 (902)
Q Consensus 328 ~~~~~~i~~~l~~~l~~~~~~~~--~~~ii~iSA~~G~gI~~ 367 (902)
.+....++...+....-... ..|++.+||.+|.||++
T Consensus 182 ---A~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~e 220 (266)
T PF03308_consen 182 ---ADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDE 220 (266)
T ss_dssp ---HHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHH
T ss_pred ---HHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHH
Confidence 23334444444443221111 24899999999999998
No 361
>KOG1707|consensus
Probab=98.12 E-value=9.2e-06 Score=93.78 Aligned_cols=108 Identities=19% Similarity=0.113 Sum_probs=67.2
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhC----CCeEEEEEecCCCCCc
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLG----VNQLGVVINKLDTVSW 326 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~----i~~iIVviNKiDl~~~ 326 (902)
....++||.--.+-.......++.||++++|.+.++..+ +..-....+-++++.. -.|+|+|.||+|..+.
T Consensus 56 vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T-----~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~ 130 (625)
T KOG1707|consen 56 VPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDEST-----VDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDN 130 (625)
T ss_pred CceEEEecccccchhHHHHHHHhhcCEEEEEEecCChHH-----hhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccc
Confidence 357899998777766677888999999999998887533 2222333444555543 1358899999998753
Q ss_pred hHHHHHH-HHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCCC
Q psy15197 327 SQDRFQE-IVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQ 370 (902)
Q Consensus 327 ~~~~~~~-i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~ 370 (902)
.....+. +...+.+ +.++. ..|.+||++-.++.+.+.
T Consensus 131 ~~~s~e~~~~pim~~-f~EiE------tciecSA~~~~n~~e~fY 168 (625)
T KOG1707|consen 131 ENNSDEVNTLPIMIA-FAEIE------TCIECSALTLANVSELFY 168 (625)
T ss_pred cccchhHHHHHHHHH-hHHHH------HHHhhhhhhhhhhHhhhh
Confidence 3221122 1111111 11111 247899999888888544
No 362
>KOG0096|consensus
Probab=98.08 E-value=6e-06 Score=82.92 Aligned_cols=102 Identities=20% Similarity=0.165 Sum_probs=68.5
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh-CCCeEEEEEecCCCCCchHH
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL-GVNQLGVVINKLDTVSWSQD 329 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~-~i~~iIVviNKiDl~~~~~~ 329 (902)
.+++.|||+|.+++......+.-.+.++|+++|.+...+- ....+.+-.+++.. ++| |+++.||.|....
T Consensus 59 irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~-----~n~~rwhrd~~rv~~NiP-iv~cGNKvDi~~r--- 129 (216)
T KOG0096|consen 59 IRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTY-----KNVPRWHRDLVRVRENIP-IVLCGNKVDIKAR--- 129 (216)
T ss_pred EEEEeeecccceeecccccccEEecceeEEEeeeeehhhh-----hcchHHHHHHHHHhcCCC-eeeeccceecccc---
Confidence 6899999999999988887778889999999999866442 12223333344433 445 7799999997531
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCC
Q psy15197 330 RFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 369 (902)
Q Consensus 330 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~ 369 (902)
+...+--.+.+ ..+..++.+||+++-|.+.++
T Consensus 130 ---~~k~k~v~~~r-----kknl~y~~iSaksn~NfekPF 161 (216)
T KOG0096|consen 130 ---KVKAKPVSFHR-----KKNLQYYEISAKSNYNFERPF 161 (216)
T ss_pred ---ccccccceeee-----cccceeEEeecccccccccch
Confidence 11111111111 245688999999999988843
No 363
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.07 E-value=1.3e-05 Score=79.86 Aligned_cols=92 Identities=25% Similarity=0.271 Sum_probs=59.3
Q ss_pred HHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcC
Q psy15197 267 NMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAG 346 (902)
Q Consensus 267 ~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~ 346 (902)
.....++.+|++|+|+|++++.. .+..++...+...+.| +|+|+||+|+.+ ....... ..+.+..+
T Consensus 5 ~~~~i~~~aD~vl~V~D~~~~~~-------~~~~~l~~~~~~~~~p-~iiv~NK~Dl~~--~~~~~~~----~~~~~~~~ 70 (156)
T cd01859 5 LVRRIIKESDVVLEVLDARDPEL-------TRSRKLERYVLELGKK-LLIVLNKADLVP--KEVLEKW----KSIKESEG 70 (156)
T ss_pred HHHHHHhhCCEEEEEeeCCCCcc-------cCCHHHHHHHHhCCCc-EEEEEEhHHhCC--HHHHHHH----HHHHHhCC
Confidence 34455667999999999987633 2344444444455644 679999999964 2111111 11222222
Q ss_pred CCCCCceEecCCCccCCCCCCCCCCcccccccCcccHHHHHHhcCC
Q psy15197 347 FRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNFKT 392 (902)
Q Consensus 347 ~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L~~l~~ 392 (902)
.+++++||++|.|+++ |.+.|..+.+
T Consensus 71 -----~~~~~iSa~~~~gi~~---------------L~~~l~~~~~ 96 (156)
T cd01859 71 -----IPVVYVSAKERLGTKI---------------LRRTIKELAK 96 (156)
T ss_pred -----CcEEEEEccccccHHH---------------HHHHHHHHHh
Confidence 3789999999999998 7787776554
No 364
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.05 E-value=1.3e-05 Score=81.76 Aligned_cols=26 Identities=31% Similarity=0.445 Sum_probs=22.8
Q ss_pred CcceEEEEEecCCCChhHHHhHHHHh
Q psy15197 24 KGRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 24 ~~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
+..++|+++|.+|+|||||+|+|+..
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~ 140 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRS 140 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCc
Confidence 44589999999999999999999843
No 365
>PLN02609 catalase
Probab=98.05 E-value=2.3e-06 Score=98.80 Aligned_cols=97 Identities=36% Similarity=0.504 Sum_probs=80.8
Q ss_pred ccccCCCCCCCCccccccccCCCCCCCCcchhhhhccccccCCCCccchhcccCCCCccccccchhhhccCCCCCCCCCc
Q psy15197 91 PVDTTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFEDRETIIKTIGPHGPVPLE 170 (902)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (902)
...||.+|.|+.+....++.++.||++++|..++++|-||++|+||+|++|+++.|+.|+|..+..+-.
T Consensus 15 ~~~Tt~~G~pv~~~~~s~t~g~~Gp~llqD~~l~eklahFdrErIpeR~vHAKG~ga~G~F~~t~d~s~----------- 83 (492)
T PLN02609 15 PFFTTNSGAPVWNNNSSLTVGSRGPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTHDISN----------- 83 (492)
T ss_pred CccCcCCCeeCCCCccceecCCCCcchhhhHHHHHhhcccccccccccccccccceEEEEEEECCchhH-----------
Confidence 345889999999999999999999999999999999999999999999999999999999997665422
Q ss_pred ccccccccccccCCCCcccccccCCCCccc
Q psy15197 171 DTYYLDKLFHFSGERNPERVVHAKGGGAFG 200 (902)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (902)
|.-..+|...|+..|-.++.+-+.|..+
T Consensus 84 --~t~a~~f~~~g~~~pv~vRFS~~~G~~~ 111 (492)
T PLN02609 84 --LTCADFLRAPGVQTPVIVRFSTVIHERG 111 (492)
T ss_pred --HHhhhhccCCCceeeEEEEcccCCCCCC
Confidence 4445555555667777777776666666
No 366
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A.
Probab=98.02 E-value=5.8e-05 Score=66.53 Aligned_cols=77 Identities=21% Similarity=0.349 Sum_probs=61.4
Q ss_pred CCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCcEEEEEEEEEceEeeeeeccCCeEEEeeeccccccceee
Q psy15197 399 KPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYVDEMSVSAAYAGDNVSVTLLNYDQQNVSVG 478 (902)
Q Consensus 399 ~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~~~~~v~~a~aGdiv~I~l~~~~~~~i~kG 478 (902)
.|.++.|...+...... ++.|+|..|+|++|..+ ......+|++|+.+++++++|.+|+-|+|.+.+.. ++..|
T Consensus 3 ~p~ki~Ilp~~vFr~~~-~IvG~V~~G~ik~G~~l---~G~~iG~I~sIe~~~k~v~~A~~G~eVai~Ieg~~--~i~eG 76 (81)
T PF14578_consen 3 RPGKIRILPVCVFRQSD-AIVGEVLEGIIKPGYPL---DGRKIGRIKSIEDNGKNVDEAKKGDEVAISIEGPT--QIKEG 76 (81)
T ss_dssp -SEEEEEEEEEEECTCC-EEEEEEEEEEEETT-EE---CSSCEEEEEEEEETTEEESEEETT-EEEEEEET----TB-TT
T ss_pred CceEEEECCcCEEecCC-eEEEEEeeeEEeCCCcc---CCEEEEEEEEeEECCcCccccCCCCEEEEEEeCCc--cCCCC
Confidence 46788888888888888 78889999999999999 33358899999999999999999999999998744 77888
Q ss_pred ccc
Q psy15197 479 FLL 481 (902)
Q Consensus 479 ~vL 481 (902)
++|
T Consensus 77 DiL 79 (81)
T PF14578_consen 77 DIL 79 (81)
T ss_dssp -EE
T ss_pred CEE
Confidence 876
No 367
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=98.00 E-value=5.2e-05 Score=69.33 Aligned_cols=68 Identities=26% Similarity=0.469 Sum_probs=54.8
Q ss_pred ceEEEeeEEeeCCC-eEEEEEEEEeeEeeCCCEEEEccCC---------cEEEEEEEEE----ceEeeeeeccCCeEEEe
Q psy15197 401 LRMSVSDIYKSTGS-GYCIAGRVETGVILAGEKVMVQPQN---------EVTTVKAVYV----DEMSVSAAYAGDNVSVT 466 (902)
Q Consensus 401 l~~~I~~i~~v~g~-G~V~~GrV~sG~Lk~Gd~v~l~p~~---------~~~~V~sI~~----~~~~v~~a~aGdiv~I~ 466 (902)
+.+.|+++...++. |.++++||++|+|+.|+.|++...+ ...+|..|.. ...++++|.|||++.|.
T Consensus 1 ~~a~VfK~~~~~~~~~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~v~ 80 (94)
T cd04090 1 LVVHVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVLIK 80 (94)
T ss_pred CEEEEEeeeecCCCCEEEEEEEEeeCeEcCCCEEEEECCCCCCccCCcEEEEEEeEEEEecCCCEEEcceeCCCCEEEEE
Confidence 35678999999987 7799999999999999999874221 2356767764 56789999999999998
Q ss_pred ee
Q psy15197 467 LL 468 (902)
Q Consensus 467 l~ 468 (902)
+.
T Consensus 81 gl 82 (94)
T cd04090 81 GI 82 (94)
T ss_pred Cc
Confidence 75
No 368
>KOG0393|consensus
Probab=98.00 E-value=1.8e-05 Score=81.40 Aligned_cols=108 Identities=20% Similarity=0.234 Sum_probs=67.0
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHH-hCCCeEEEEEecCCCCCchHH
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRS-LGVNQLGVVINKLDTVSWSQD 329 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~-~~i~~iIVviNKiDl~~~~~~ 329 (902)
..+.+|||+|+++|-......+..+|++|++++...... |+ .-....+..++. ...-++|+|.+|.||.+ +..
T Consensus 53 v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S---~~--nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~-d~~ 126 (198)
T KOG0393|consen 53 VELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPES---FE--NVKSKWIPEIKHHCPNVPIILVGTKADLRD-DPS 126 (198)
T ss_pred EEEeeeecCCCcccccccccCCCCCCEEEEEEEcCChhh---HH--HHHhhhhHHHHhhCCCCCEEEEeehHHhhh-CHH
Confidence 458899999999987755557778999999998876522 11 111111222222 22234779999999973 222
Q ss_pred HHHHHH---------HHHHHhhhhcCCCCCCceEecCCCccCCCCCCC
Q psy15197 330 RFQEIV---------TKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 368 (902)
Q Consensus 330 ~~~~i~---------~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~ 368 (902)
..+++. ++-..+.+++|. ..++.+||++..|+.+.
T Consensus 127 ~~~~l~~~~~~~Vt~~~g~~lA~~iga----~~y~EcSa~tq~~v~~v 170 (198)
T KOG0393|consen 127 TLEKLQRQGLEPVTYEQGLELAKEIGA----VKYLECSALTQKGVKEV 170 (198)
T ss_pred HHHHHHhccCCcccHHHHHHHHHHhCc----ceeeeehhhhhCCcHHH
Confidence 222221 223334445553 47899999999998873
No 369
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.94 E-value=4.2e-05 Score=75.08 Aligned_cols=80 Identities=18% Similarity=0.252 Sum_probs=54.4
Q ss_pred HHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh--CCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhh
Q psy15197 266 PNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL--GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLK 343 (902)
Q Consensus 266 ~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~--~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~ 343 (902)
+.....+..+|++|+|+|+..+.. .+..++...+... +. ++|+|+||+|+.+ +.... .....++
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~-------~~~~~l~~~l~~~~~~k-~~iivlNK~DL~~--~~~~~----~~~~~~~ 68 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLL-------FRPPDLERYVKEVDPRK-KNILLLNKADLLT--EEQRK----AWAEYFK 68 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcc-------cCCHHHHHHHHhccCCC-cEEEEEechhcCC--HHHHH----HHHHHHH
Confidence 567788999999999999988733 3444555656554 54 4679999999974 22222 2223343
Q ss_pred hcCCCCCCceEecCCCccCCC
Q psy15197 344 QAGFRDSDIEYVPCSGLTGEN 364 (902)
Q Consensus 344 ~~~~~~~~~~ii~iSA~~G~g 364 (902)
..+ .+++++||+++.+
T Consensus 69 ~~~-----~~ii~iSa~~~~~ 84 (141)
T cd01857 69 KEG-----IVVVFFSALKENA 84 (141)
T ss_pred hcC-----CeEEEEEecCCCc
Confidence 333 2789999999875
No 370
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.94 E-value=0.00019 Score=79.50 Aligned_cols=102 Identities=21% Similarity=0.277 Sum_probs=61.4
Q ss_pred CeEEeeeEEEEEECC--eEEEEEeCCCccc-------------hHHHHHH-HH--------------HHcCEEEEEEECC
Q psy15197 236 GITMDVGQSQFETKT--KYITLLDAPGHKD-------------FIPNMIT-GA--------------TQADVALLVVDAT 285 (902)
Q Consensus 236 GiTid~~~~~~~~~~--~~i~lIDTPG~~d-------------f~~~~~~-~l--------------~~aD~aIlVVDa~ 285 (902)
++.+......+.-++ ..+++|||||+.+ |+..... ++ ...+++|+.+-.+
T Consensus 65 ~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Pt 144 (373)
T COG5019 65 TLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPT 144 (373)
T ss_pred ceEEEeeeeeeecCCeEEEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCC
Confidence 344444444444444 3689999999987 2222111 11 1257999999876
Q ss_pred CCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCC
Q psy15197 286 RGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGF 347 (902)
Q Consensus 286 ~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~ 347 (902)
... +...+.+.++.+... ..+|=||-|.|... .+++....+.+...++...+
T Consensus 145 gh~------l~~~DIe~Mk~ls~~--vNlIPVI~KaD~lT--~~El~~~K~~I~~~i~~~nI 196 (373)
T COG5019 145 GHG------LKPLDIEAMKRLSKR--VNLIPVIAKADTLT--DDELAEFKERIREDLEQYNI 196 (373)
T ss_pred CCC------CCHHHHHHHHHHhcc--cCeeeeeeccccCC--HHHHHHHHHHHHHHHHHhCC
Confidence 431 334555555444332 33666899999875 56677777777777776544
No 371
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.93 E-value=2.2e-05 Score=79.70 Aligned_cols=88 Identities=15% Similarity=0.194 Sum_probs=56.9
Q ss_pred CCccc-hHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHH
Q psy15197 259 PGHKD-FIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTK 337 (902)
Q Consensus 259 PG~~d-f~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~ 337 (902)
|||-. .+.++...+..||++++|+|++.+.. ......+..+ .+. ++|+|+||+|+.+ ........
T Consensus 3 ~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~-------~~~~~i~~~~--~~k-~~ilVlNK~Dl~~--~~~~~~~~-- 68 (171)
T cd01856 3 PGHMAKALRQIKEKLKLVDLVIEVRDARIPLS-------SRNPLLEKIL--GNK-PRIIVLNKADLAD--PKKTKKWL-- 68 (171)
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeccCccC-------cCChhhHhHh--cCC-CEEEEEehhhcCC--hHHHHHHH--
Confidence 67654 77788889999999999999987632 1222232222 233 4669999999974 22111111
Q ss_pred HHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 338 LGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 338 l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.+++..+ .+++.+||+++.|+++
T Consensus 69 --~~~~~~~-----~~vi~iSa~~~~gi~~ 91 (171)
T cd01856 69 --KYFESKG-----EKVLFVNAKSGKGVKK 91 (171)
T ss_pred --HHHHhcC-----CeEEEEECCCcccHHH
Confidence 2222222 2678999999999998
No 372
>cd08154 catalase_clade_1 Clade 1 of the heme-binding enzyme catalase. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes, which is involved in the protection of cells from the toxic effects of peroxides. It catalyzes the conversion of hydrogen peroxide to water and molecular oxygen. Catalases also utilize hydrogen peroxide to oxidize various substrates such as alcohol or phenols. Clade 1 catalases are found in bacteria, algae, and plants; they have a relatively small subunit size of 55 to 69 kDa, and bind a protoheme IX (heme b) group buried deep inside the structure. They appear to form tetramers. In eukaryotic cells, catalases are located in peroxisomes.
Probab=97.92 E-value=5.8e-06 Score=95.27 Aligned_cols=97 Identities=42% Similarity=0.623 Sum_probs=81.9
Q ss_pred cCCCCCCCCccccccccCCCCCCCCcchhhhhccccccCCCCccchhcccCCCCccccccchhhhccCCCCCCCCCcccc
Q psy15197 94 TTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFEDRETIIKTIGPHGPVPLEDTY 173 (902)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (902)
||.+|.|+.+..--+++++.||++++|...+++|-||++|.||+|++|+++.|+.|+|..+..+-. |
T Consensus 3 t~~~G~pv~~~~~s~t~g~~Gp~llqD~~l~ekl~hf~reripeR~vHAKG~ga~G~F~vt~d~~~-------------~ 69 (469)
T cd08154 3 TTNQGAPVGDNQNSQTVGPRGPVLLEDYHLIEKLAHFDRERIPERVVHARGAGAHGYFEAYGDISD-------------Y 69 (469)
T ss_pred cCCCCcCcCCcccceecCCCCCchhhhHHHHHHhhhhccCCCccccccCceeeEEEEEEECCchhH-------------H
Confidence 788899999999999999999999999999999999999999999999999999999997655422 3
Q ss_pred cccccccccCCCCcccccccCCCCccccce
Q psy15197 174 YLDKLFHFSGERNPERVVHAKGGGAFGYFE 203 (902)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (902)
.-..+|...|+..|-.++.+-++|..+..+
T Consensus 70 t~a~~f~~~g~~~Pv~vRFS~~~g~~~~~D 99 (469)
T cd08154 70 TRASFLQEPGKKTPVFVRFSTVIHGKGSPE 99 (469)
T ss_pred HhhhhccCCCccceeEEecccCCCCCCCCc
Confidence 445555555778888888887777777444
No 373
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.92 E-value=2.8e-05 Score=77.72 Aligned_cols=83 Identities=18% Similarity=0.023 Sum_probs=52.6
Q ss_pred HHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhC-CCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcC
Q psy15197 268 MITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLG-VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAG 346 (902)
Q Consensus 268 ~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~-i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~ 346 (902)
+..++..+|++++|+|++.+.. .....+...+.... ..++|+|+||+|+.+ .+........+ -+...
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~-------~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~--~~~~~~~~~~~---~~~~~ 69 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMG-------TRCKHVEEYLKKEKPHKHLIFVLNKCDLVP--TWVTARWVKIL---SKEYP 69 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCcc-------ccCHHHHHHHHhccCCCCEEEEEEchhcCC--HHHHHHHHHHH---hcCCc
Confidence 4678899999999999987632 23444555554432 134679999999975 22222222222 11111
Q ss_pred CCCCCceEecCCCccCCCCCC
Q psy15197 347 FRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 347 ~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+.++++||+++.|+.+
T Consensus 70 -----~~~~~iSa~~~~~~~~ 85 (157)
T cd01858 70 -----TIAFHASINNPFGKGS 85 (157)
T ss_pred -----EEEEEeeccccccHHH
Confidence 2358899999999988
No 374
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=97.91 E-value=1.6e-05 Score=88.97 Aligned_cols=89 Identities=19% Similarity=0.219 Sum_probs=61.1
Q ss_pred CCeEEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCC--chhhHHHHHHHHH----
Q psy15197 235 RGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFES--GGQTREHALLVRS---- 308 (902)
Q Consensus 235 rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~--~~qt~~~l~~l~~---- 308 (902)
+..|.......+.+++..+.++|++|++...+.+......++++|+|||.++--. ...+. .....+.+.....
T Consensus 145 r~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~-~~~e~~~~nrl~esl~~f~~i~~~ 223 (317)
T cd00066 145 RVKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQ-VLFEDESTNRMQESLNLFDSICNS 223 (317)
T ss_pred ecccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhccc-ccccCCcchHHHHHHHHHHHHHhC
Confidence 4456677777899999999999999999999999999999999999999985210 00000 0112222222222
Q ss_pred --hCCCeEEEEEecCCCC
Q psy15197 309 --LGVNQLGVVINKLDTV 324 (902)
Q Consensus 309 --~~i~~iIVviNKiDl~ 324 (902)
....++++++||.|+.
T Consensus 224 ~~~~~~pill~~NK~D~f 241 (317)
T cd00066 224 RWFANTSIILFLNKKDLF 241 (317)
T ss_pred ccccCCCEEEEccChHHH
Confidence 1224588999999964
No 375
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.88 E-value=2.7e-05 Score=85.31 Aligned_cols=97 Identities=15% Similarity=0.207 Sum_probs=64.0
Q ss_pred CCccc-hHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHH
Q psy15197 259 PGHKD-FIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTK 337 (902)
Q Consensus 259 PG~~d-f~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~ 337 (902)
|||.. ..+++...+..+|++|+|+|+..+.. .........+ .+ +++|+|+||+|+++ ........
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~-------~~~~~i~~~l--~~-kp~IiVlNK~DL~~--~~~~~~~~-- 70 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLS-------SRNPMIDEIR--GN-KPRLIVLNKADLAD--PAVTKQWL-- 70 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCC-------CCChhHHHHH--CC-CCEEEEEEccccCC--HHHHHHHH--
Confidence 78764 77788889999999999999987632 2223333333 13 45779999999974 22122211
Q ss_pred HHHhhhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCcccHHHHHHhcC
Q psy15197 338 LGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNFK 391 (902)
Q Consensus 338 l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L~~l~ 391 (902)
..++..+ .+++++||+++.|+.+ |.+.|.++.
T Consensus 71 --~~~~~~~-----~~vi~iSa~~~~gi~~---------------L~~~i~~~~ 102 (276)
T TIGR03596 71 --KYFEEKG-----IKALAINAKKGKGVKK---------------IIKAAKKLL 102 (276)
T ss_pred --HHHHHcC-----CeEEEEECCCcccHHH---------------HHHHHHHHH
Confidence 2222222 2689999999999988 777776554
No 376
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.87 E-value=2.3e-05 Score=80.77 Aligned_cols=24 Identities=38% Similarity=0.483 Sum_probs=21.7
Q ss_pred ceEEEEEecCCCChhHHHhHHHHh
Q psy15197 26 RLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 26 ~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
..+++++|.+|+|||||+|+|+..
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~ 150 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKK 150 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHh
Confidence 468999999999999999999855
No 377
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=97.87 E-value=3.6e-05 Score=86.86 Aligned_cols=52 Identities=15% Similarity=0.241 Sum_probs=46.4
Q ss_pred CCeEEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCC
Q psy15197 235 RGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATR 286 (902)
Q Consensus 235 rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~ 286 (902)
+-.|.......+.+++..+.++|..|++...+.+...+..++++|+|||.++
T Consensus 168 r~~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd 219 (342)
T smart00275 168 RVPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSE 219 (342)
T ss_pred eCCccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcc
Confidence 4446666777899999999999999999999999999999999999999985
No 378
>KOG3883|consensus
Probab=97.81 E-value=6.2e-05 Score=73.11 Aligned_cols=102 Identities=17% Similarity=0.112 Sum_probs=60.2
Q ss_pred CeEEEEEeCCCccch-HHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHH-HHHHh---CCCeEEEEEecCCCC
Q psy15197 250 TKYITLLDAPGHKDF-IPNMITGATQADVALLVVDATRGEFETGFESGGQTREHAL-LVRSL---GVNQLGVVINKLDTV 324 (902)
Q Consensus 250 ~~~i~lIDTPG~~df-~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~-~l~~~---~i~~iIVviNKiDl~ 324 (902)
...+.|.||+|.... ...-..++.-+|+.+||.+..+.. +| +..+.++ .+... +--+|+|+.||+|+.
T Consensus 59 rE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~e---Sf----~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~ 131 (198)
T KOG3883|consen 59 REQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPE---SF----QRVELLKKEIDKHKDKKEVPIVVLANKRDRA 131 (198)
T ss_pred hheEEEeecccccCchhhhhHhHhccCceEEEEecCCCHH---HH----HHHHHHHHHHhhccccccccEEEEechhhcc
Confidence 347899999999998 666677788999999999988762 12 2222221 11111 222477889999986
Q ss_pred CchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 325 SWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 325 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+ +.+.. .+..+...+. +.+....++|.....+.+
T Consensus 132 ~--p~~vd--~d~A~~Wa~r-----Ekvkl~eVta~dR~sL~e 165 (198)
T KOG3883|consen 132 E--PREVD--MDVAQIWAKR-----EKVKLWEVTAMDRPSLYE 165 (198)
T ss_pred c--chhcC--HHHHHHHHhh-----hheeEEEEEeccchhhhh
Confidence 3 11110 0111111111 224667888877666555
No 379
>KOG1673|consensus
Probab=97.77 E-value=8.9e-05 Score=72.18 Aligned_cols=107 Identities=18% Similarity=0.204 Sum_probs=73.8
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeE-EEEEecCCCC-Cch
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQL-GVVINKLDTV-SWS 327 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~i-IVviNKiDl~-~~~ 327 (902)
...+.+||..|.++|....--+-.++-++++++|.+...+- ...++..+.++..+...+ |+|.+|-|+- +..
T Consensus 68 ~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TL------nSi~~WY~QAr~~NktAiPilvGTKyD~fi~lp 141 (205)
T KOG1673|consen 68 DISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRSTL------NSIKEWYRQARGLNKTAIPILVGTKYDLFIDLP 141 (205)
T ss_pred EEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCchHHH------HHHHHHHHHHhccCCccceEEeccchHhhhcCC
Confidence 34678999999999998888888889999999999876431 123444455555542211 3789999952 222
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 328 QDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 328 ~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.+....+......+.+-++ .+.+++|+.+..|+.+
T Consensus 142 ~e~Q~~I~~qar~YAk~mn-----AsL~F~Sts~sINv~K 176 (205)
T KOG1673|consen 142 PELQETISRQARKYAKVMN-----ASLFFCSTSHSINVQK 176 (205)
T ss_pred HHHHHHHHHHHHHHHHHhC-----CcEEEeeccccccHHH
Confidence 3444455555555665543 4789999999999987
No 380
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.76 E-value=0.00013 Score=78.83 Aligned_cols=100 Identities=22% Similarity=0.260 Sum_probs=56.8
Q ss_pred CCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchH
Q psy15197 249 KTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQ 328 (902)
Q Consensus 249 ~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~ 328 (902)
.++-+.||.|-|.-.--- .-...+|.+++|.=+.-| ...|.... . + +.+--+ +||||.|+.+..
T Consensus 142 aG~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~G-------D~~Q~iK~-G-i--mEiaDi-~vINKaD~~~A~- 205 (323)
T COG1703 142 AGYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAG-------DDLQGIKA-G-I--MEIADI-IVINKADRKGAE- 205 (323)
T ss_pred cCCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCC-------cHHHHHHh-h-h--hhhhhe-eeEeccChhhHH-
Confidence 377899999998644221 223568999988866555 11222111 1 1 111224 899999965421
Q ss_pred HHHHHHHHHHHH---hhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 329 DRFQEIVTKLGA---FLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 329 ~~~~~i~~~l~~---~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
....++...+.. .....+|. -|++.+||.+|+|+++
T Consensus 206 ~a~r~l~~al~~~~~~~~~~~W~---ppv~~t~A~~g~Gi~~ 244 (323)
T COG1703 206 KAARELRSALDLLREVWRENGWR---PPVVTTSALEGEGIDE 244 (323)
T ss_pred HHHHHHHHHHHhhcccccccCCC---CceeEeeeccCCCHHH
Confidence 112222222211 12233454 3899999999999998
No 381
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.75 E-value=6.5e-05 Score=74.90 Aligned_cols=26 Identities=35% Similarity=0.477 Sum_probs=22.8
Q ss_pred CcceEEEEEecCCCChhHHHhHHHHh
Q psy15197 24 KGRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 24 ~~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
....+++++|++|+|||||+|+|+..
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~ 123 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNK 123 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHcc
Confidence 35678999999999999999999844
No 382
>KOG1954|consensus
Probab=97.73 E-value=0.00027 Score=77.63 Aligned_cols=67 Identities=24% Similarity=0.298 Sum_probs=52.4
Q ss_pred EEEEEeCCCccc-----------hHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEec
Q psy15197 252 YITLLDAPGHKD-----------FIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINK 320 (902)
Q Consensus 252 ~i~lIDTPG~~d-----------f~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNK 320 (902)
.|+||||||+-. |..-..-.+..+|.++|++|+..- +++..+++.+..++...-+ +=||+||
T Consensus 148 ~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKL------DIsdEf~~vi~aLkG~Edk-iRVVLNK 220 (532)
T KOG1954|consen 148 SVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKL------DISDEFKRVIDALKGHEDK-IRVVLNK 220 (532)
T ss_pred heeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhc------cccHHHHHHHHHhhCCcce-eEEEecc
Confidence 789999999753 777677778899999999999753 2556778888777655433 5589999
Q ss_pred CCCCC
Q psy15197 321 LDTVS 325 (902)
Q Consensus 321 iDl~~ 325 (902)
.|.++
T Consensus 221 ADqVd 225 (532)
T KOG1954|consen 221 ADQVD 225 (532)
T ss_pred ccccC
Confidence 99986
No 383
>PRK12288 GTPase RsgA; Reviewed
Probab=97.70 E-value=6.8e-05 Score=84.69 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=19.5
Q ss_pred EEEEecCCCChhHHHhHHHHh
Q psy15197 29 LVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 29 v~v~G~~~~GKstL~~~ll~~ 49 (902)
++|+|.+|+|||||+|+|+..
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~ 228 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPE 228 (347)
T ss_pred EEEECCCCCCHHHHHHHhccc
Confidence 799999999999999999854
No 384
>KOG3886|consensus
Probab=97.69 E-value=0.00012 Score=75.94 Aligned_cols=90 Identities=21% Similarity=0.285 Sum_probs=60.1
Q ss_pred CCeEEeeeEEEEEE-CCeEEEEEeCCCccchHHHHHH-----HHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHH
Q psy15197 235 RGITMDVGQSQFET-KTKYITLLDAPGHKDFIPNMIT-----GATQADVALLVVDATRGEFETGFESGGQTREHALLVRS 308 (902)
Q Consensus 235 rGiTid~~~~~~~~-~~~~i~lIDTPG~~df~~~~~~-----~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~ 308 (902)
.|-|||....++.. ++..+++||+.|++.|+++..+ ..+..++.++|+|+....+|+.|. ..+..++.+.+
T Consensus 36 lg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~---~yqk~Le~ll~ 112 (295)
T KOG3886|consen 36 LGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFH---YYQKCLEALLQ 112 (295)
T ss_pred cCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHH---HHHHHHHHHHh
Confidence 45567766666643 4578999999999987776555 456789999999998876654332 22333333333
Q ss_pred h-CCCeEEEEEecCCCCCch
Q psy15197 309 L-GVNQLGVVINKLDTVSWS 327 (902)
Q Consensus 309 ~-~i~~iIVviNKiDl~~~~ 327 (902)
. -.-.+.+++.|+|++..+
T Consensus 113 ~SP~AkiF~l~hKmDLv~~d 132 (295)
T KOG3886|consen 113 NSPEAKIFCLLHKMDLVQED 132 (295)
T ss_pred cCCcceEEEEEeechhcccc
Confidence 2 222466899999998643
No 385
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.66 E-value=3.6e-05 Score=77.14 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=20.5
Q ss_pred eEEEEEecCCCChhHHHhHHHHh
Q psy15197 27 LHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 27 ~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
-.++++|+.|+|||||+|+|+..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36889999999999999999854
No 386
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.65 E-value=0.00011 Score=81.04 Aligned_cols=89 Identities=16% Similarity=0.218 Sum_probs=58.2
Q ss_pred CCCccc-hHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHH
Q psy15197 258 APGHKD-FIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVT 336 (902)
Q Consensus 258 TPG~~d-f~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~ 336 (902)
=|||.. -.++....+..+|++|+|+|+..+.. .....+...+. + +++|+|+||+|+++ ....+.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~-------~~~~~l~~~~~--~-kp~iiVlNK~DL~~--~~~~~~--- 71 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLS-------SENPMIDKIIG--N-KPRLLILNKSDLAD--PEVTKK--- 71 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCC-------CCChhHHHHhC--C-CCEEEEEEchhcCC--HHHHHH---
Confidence 478764 66778888899999999999987632 22333333332 4 44679999999974 222222
Q ss_pred HHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 337 KLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 337 ~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
...+++..+ .+++++||+++.|+..
T Consensus 72 -~~~~~~~~~-----~~vi~vSa~~~~gi~~ 96 (287)
T PRK09563 72 -WIEYFEEQG-----IKALAINAKKGQGVKK 96 (287)
T ss_pred -HHHHHHHcC-----CeEEEEECCCcccHHH
Confidence 222222222 3689999999999987
No 387
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.65 E-value=0.00013 Score=73.34 Aligned_cols=65 Identities=17% Similarity=0.173 Sum_probs=37.5
Q ss_pred CeEEEEEeCCCccc---hHH-----HHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecC
Q psy15197 250 TKYITLLDAPGHKD---FIP-----NMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKL 321 (902)
Q Consensus 250 ~~~i~lIDTPG~~d---f~~-----~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKi 321 (902)
...+.||||||..+ ... .........|.+++|||+...... . .........+.. --+ |++||+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~----~-~~~~~~~~Qi~~---ad~-ivlnk~ 156 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQH----L-DQQTEAQSQIAF---ADR-ILLNKT 156 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHH----h-hccHHHHHHHHH---CCE-EEEecc
Confidence 45678999999876 221 122334468999999998754210 0 011111122222 235 799999
Q ss_pred CC
Q psy15197 322 DT 323 (902)
Q Consensus 322 Dl 323 (902)
|+
T Consensus 157 dl 158 (158)
T cd03112 157 DL 158 (158)
T ss_pred cC
Confidence 95
No 388
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.63 E-value=0.00017 Score=79.62 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=22.8
Q ss_pred CcceEEEEEecCCCChhHHHhHHHHh
Q psy15197 24 KGRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 24 ~~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
+..++|+|+|.+|+|||||+|+|+..
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~ 144 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGK 144 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcC
Confidence 35689999999999999999999743
No 389
>PRK14974 cell division protein FtsY; Provisional
Probab=97.62 E-value=0.0005 Score=77.20 Aligned_cols=92 Identities=18% Similarity=0.254 Sum_probs=53.6
Q ss_pred CeEEEEEeCCCccc----hHHHHHHHH--HHcCEEEEEEECCCCccccccCCchhhHHHHHHH-HHhCCCeEEEEEecCC
Q psy15197 250 TKYITLLDAPGHKD----FIPNMITGA--TQADVALLVVDATRGEFETGFESGGQTREHALLV-RSLGVNQLGVVINKLD 322 (902)
Q Consensus 250 ~~~i~lIDTPG~~d----f~~~~~~~l--~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l-~~~~i~~iIVviNKiD 322 (902)
++.+.||||||... ++....... ...|.++||+|++.| ....+..... ...++. - +++||+|
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g---------~d~~~~a~~f~~~~~~~-g-iIlTKlD 290 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAG---------NDAVEQAREFNEAVGID-G-VILTKVD 290 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccc---------hhHHHHHHHHHhcCCCC-E-EEEeeec
Confidence 45699999999764 333332222 247999999999876 1223333322 234554 3 6899999
Q ss_pred CCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 323 TVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 323 l~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.... .-.++... ...+ .|+.+++ +|++++.
T Consensus 291 ~~~~----~G~~ls~~----~~~~-----~Pi~~i~--~Gq~v~D 320 (336)
T PRK14974 291 ADAK----GGAALSIA----YVIG-----KPILFLG--VGQGYDD 320 (336)
T ss_pred CCCC----ccHHHHHH----HHHC-----cCEEEEe--CCCChhh
Confidence 7531 11111111 1122 3888887 7888865
No 390
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.60 E-value=0.00085 Score=71.35 Aligned_cols=38 Identities=18% Similarity=0.102 Sum_probs=28.6
Q ss_pred CCeEEEEEeCCCccc------hHHHHHHHHHH--cCEEEEEEECCC
Q psy15197 249 KTKYITLLDAPGHKD------FIPNMITGATQ--ADVALLVVDATR 286 (902)
Q Consensus 249 ~~~~i~lIDTPG~~d------f~~~~~~~l~~--aD~aIlVVDa~~ 286 (902)
.+..+.++||||..+ .....+.++.. +|++|+.++...
T Consensus 58 ~~~~v~~lDteG~~~~~~~~~~~~~~~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 58 KEHAVLLLDTEGTDGRERGEFEDDARLFALATLLSSVLIYNSWETI 103 (224)
T ss_pred CcceEEEEecCCcCccccCchhhhhHHHHHHHHHhCEEEEeccCcc
Confidence 357899999999865 23345566665 999999998864
No 391
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.59 E-value=0.00018 Score=78.86 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=21.8
Q ss_pred cceEEEEEecCCCChhHHHhHHHH
Q psy15197 25 GRLHLVVIGHVDAGKSTLMGHLLY 48 (902)
Q Consensus 25 ~~~~v~v~G~~~~GKstL~~~ll~ 48 (902)
..++|+|+|.+|+|||||+|+|+.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~ 140 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAG 140 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhC
Confidence 458999999999999999999974
No 392
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.58 E-value=9.4e-05 Score=76.23 Aligned_cols=100 Identities=15% Similarity=0.105 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHH-Hhh
Q psy15197 264 FIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLG-AFL 342 (902)
Q Consensus 264 f~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~-~~l 342 (902)
|...+..++..+|++|+|+|+++...+ ..... .....+ +++|+|+||+|+.+... ....+..... ...
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-------~~~~l--~~~~~~-~~~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~ 92 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS-------LIPRL--RLFGGN-NPVILVGNKIDLLPKDK-NLVRIKNWLRAKAA 92 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc-------cchhH--HHhcCC-CcEEEEEEchhcCCCCC-CHHHHHHHHHHHHH
Confidence 577777788899999999999875321 11222 112234 45779999999974221 1111111110 011
Q ss_pred hhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCcccHHHHHHhcC
Q psy15197 343 KQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNFK 391 (902)
Q Consensus 343 ~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L~~l~ 391 (902)
+..++. ..+++++||++|.|+++ |.+.|....
T Consensus 93 ~~~~~~--~~~i~~vSA~~~~gi~e---------------L~~~l~~~l 124 (190)
T cd01855 93 AGLGLK--PKDVILISAKKGWGVEE---------------LINAIKKLA 124 (190)
T ss_pred hhcCCC--cccEEEEECCCCCCHHH---------------HHHHHHHHh
Confidence 222221 12579999999999998 777776654
No 393
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.54 E-value=9.8e-05 Score=79.54 Aligned_cols=22 Identities=32% Similarity=0.302 Sum_probs=20.2
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.++++|++|+|||||+|+|+..
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~ 143 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPS 143 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhh
Confidence 5899999999999999999854
No 394
>PRK12289 GTPase RsgA; Reviewed
Probab=97.54 E-value=8.6e-05 Score=83.92 Aligned_cols=21 Identities=38% Similarity=0.479 Sum_probs=19.5
Q ss_pred EEEEecCCCChhHHHhHHHHh
Q psy15197 29 LVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 29 v~v~G~~~~GKstL~~~ll~~ 49 (902)
++|+|.+|+|||||+|+|+..
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~ 195 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPD 195 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCc
Confidence 899999999999999999844
No 395
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.54 E-value=0.00032 Score=69.91 Aligned_cols=74 Identities=23% Similarity=0.262 Sum_probs=45.5
Q ss_pred CEEEEEEECCCCccccccCCchhhHHHH-HHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceE
Q psy15197 276 DVALLVVDATRGEFETGFESGGQTREHA-LLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEY 354 (902)
Q Consensus 276 D~aIlVVDa~~g~~E~~~~~~~qt~~~l-~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~i 354 (902)
|++|+|+|+..+.. ....... ..+...+.| +|+|+||+|+.+ .+...+....+ .+... .++
T Consensus 1 Dvvl~VvD~~~p~~-------~~~~~i~~~~~~~~~~p-~IiVlNK~Dl~~--~~~~~~~~~~~---~~~~~-----~~i 62 (155)
T cd01849 1 DVILEVLDARDPLG-------TRSPDIERVLIKEKGKK-LILVLNKADLVP--KEVLRKWLAYL---RHSYP-----TIP 62 (155)
T ss_pred CEEEEEEeccCCcc-------ccCHHHHHHHHhcCCCC-EEEEEechhcCC--HHHHHHHHHHH---HhhCC-----ceE
Confidence 78999999987632 2233333 244445555 679999999975 22222211111 11111 268
Q ss_pred ecCCCccCCCCCC
Q psy15197 355 VPCSGLTGENLTT 367 (902)
Q Consensus 355 i~iSA~~G~gI~~ 367 (902)
+++||++|.|+.+
T Consensus 63 i~vSa~~~~gi~~ 75 (155)
T cd01849 63 FKISATNGQGIEK 75 (155)
T ss_pred EEEeccCCcChhh
Confidence 9999999999998
No 396
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.54 E-value=0.00026 Score=71.81 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=22.1
Q ss_pred CcceEEEEEecCCCChhHHHhHHHH
Q psy15197 24 KGRLHLVVIGHVDAGKSTLMGHLLY 48 (902)
Q Consensus 24 ~~~~~v~v~G~~~~GKstL~~~ll~ 48 (902)
+..++++++|.+|+|||||+|+|+.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~ 137 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRG 137 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhC
Confidence 3457999999999999999999984
No 397
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.52 E-value=0.0004 Score=77.64 Aligned_cols=93 Identities=20% Similarity=0.349 Sum_probs=52.5
Q ss_pred CCeEEEEEeCCCccc----hHHHHHHHHH--------HcCEEEEEEECCCCccccccCCchhhHHHH-HHHHHhCCCeEE
Q psy15197 249 KTKYITLLDAPGHKD----FIPNMITGAT--------QADVALLVVDATRGEFETGFESGGQTREHA-LLVRSLGVNQLG 315 (902)
Q Consensus 249 ~~~~i~lIDTPG~~d----f~~~~~~~l~--------~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l-~~l~~~~i~~iI 315 (902)
.++.+.||||||... .+.+.....+ .++..+||+|++.+. ...... ......++. -
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~---------~~~~~a~~f~~~~~~~--g 263 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ---------NALSQAKAFHEAVGLT--G 263 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh---------HHHHHHHHHHhhCCCC--E
Confidence 367899999999754 2222222222 367899999999761 122222 222233433 3
Q ss_pred EEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 316 VVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 316 VviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+++||+|.... .-.+.. .+...+ .|+.+++ +|++++.
T Consensus 264 iIlTKlD~t~~----~G~~l~----~~~~~~-----~Pi~~v~--~Gq~~~D 300 (318)
T PRK10416 264 IILTKLDGTAK----GGVVFA----IADELG-----IPIKFIG--VGEGIDD 300 (318)
T ss_pred EEEECCCCCCC----ccHHHH----HHHHHC-----CCEEEEe--CCCChhh
Confidence 78999996431 112222 122233 3888888 7888865
No 398
>KOG2655|consensus
Probab=97.51 E-value=0.0048 Score=69.15 Aligned_cols=86 Identities=20% Similarity=0.257 Sum_probs=51.8
Q ss_pred eEEEEEeCCCccc-------------hHHHH-HHHH-----------H--HcCEEEEEEECCCCccccccCCchhhHHHH
Q psy15197 251 KYITLLDAPGHKD-------------FIPNM-ITGA-----------T--QADVALLVVDATRGEFETGFESGGQTREHA 303 (902)
Q Consensus 251 ~~i~lIDTPG~~d-------------f~~~~-~~~l-----------~--~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l 303 (902)
..+++|||||+.| |+..- ..++ . ..+++|+.|..+..- +.+.+.+.+
T Consensus 79 l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghg------L~p~Di~~M 152 (366)
T KOG2655|consen 79 LNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHG------LKPLDIEFM 152 (366)
T ss_pred EeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCC------CcHhhHHHH
Confidence 3689999999987 22221 1111 1 468999999876321 334555555
Q ss_pred HHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcC
Q psy15197 304 LLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAG 346 (902)
Q Consensus 304 ~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~ 346 (902)
+.+.. .+ .+|=||-|.|... .+.+...++.+...++...
T Consensus 153 k~l~~-~v-NiIPVI~KaD~lT--~~El~~~K~~I~~~i~~~n 191 (366)
T KOG2655|consen 153 KKLSK-KV-NLIPVIAKADTLT--KDELNQFKKRIRQDIEEHN 191 (366)
T ss_pred HHHhc-cc-cccceeeccccCC--HHHHHHHHHHHHHHHHHcC
Confidence 43332 22 3556889999875 4556666666666665544
No 399
>PRK12289 GTPase RsgA; Reviewed
Probab=97.49 E-value=0.00029 Score=79.68 Aligned_cols=80 Identities=26% Similarity=0.244 Sum_probs=52.3
Q ss_pred HHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCC
Q psy15197 271 GATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDS 350 (902)
Q Consensus 271 ~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~ 350 (902)
++..+|.+++|+|+.+..++ .....+.+..+...+++ +|+|+||+|+++ ...... +...++..++
T Consensus 86 ~~aNvD~vLlV~d~~~p~~~-----~~~LdR~L~~a~~~~ip-~ILVlNK~DLv~--~~~~~~----~~~~~~~~g~--- 150 (352)
T PRK12289 86 PVANADQILLVFALAEPPLD-----PWQLSRFLVKAESTGLE-IVLCLNKADLVS--PTEQQQ----WQDRLQQWGY--- 150 (352)
T ss_pred hhhcCCEEEEEEECCCCCCC-----HHHHHHHHHHHHHCCCC-EEEEEEchhcCC--hHHHHH----HHHHHHhcCC---
Confidence 47889999999999865321 01223444444556766 569999999975 222222 2223344454
Q ss_pred CceEecCCCccCCCCCC
Q psy15197 351 DIEYVPCSGLTGENLTT 367 (902)
Q Consensus 351 ~~~ii~iSA~~G~gI~~ 367 (902)
+++++||++|.|+.+
T Consensus 151 --~v~~iSA~tg~GI~e 165 (352)
T PRK12289 151 --QPLFISVETGIGLEA 165 (352)
T ss_pred --eEEEEEcCCCCCHHH
Confidence 689999999999887
No 400
>PRK13796 GTPase YqeH; Provisional
Probab=97.49 E-value=0.00015 Score=82.55 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=21.4
Q ss_pred ceEEEEEecCCCChhHHHhHHHHh
Q psy15197 26 RLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 26 ~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
..++.|||.+|+|||||+|+|+..
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~ 183 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKE 183 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhh
Confidence 358999999999999999999854
No 401
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.48 E-value=0.00013 Score=76.31 Aligned_cols=65 Identities=23% Similarity=0.385 Sum_probs=50.2
Q ss_pred CCeEEEEEeC-CCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCC
Q psy15197 249 KTKYITLLDA-PGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDT 323 (902)
Q Consensus 249 ~~~~i~lIDT-PG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl 323 (902)
+.+.+.++|| +|.+-|...+ ...+|.+|+|+|.+.... ...+++-++..+++++++.+|+||+|-
T Consensus 132 ~~~e~VivDtEAGiEHfgRg~---~~~vD~vivVvDpS~~sl-------~taeri~~L~~elg~k~i~~V~NKv~e 197 (255)
T COG3640 132 NRYEVVIVDTEAGIEHFGRGT---IEGVDLVIVVVDPSYKSL-------RTAERIKELAEELGIKRIFVVLNKVDE 197 (255)
T ss_pred ccCcEEEEecccchhhhcccc---ccCCCEEEEEeCCcHHHH-------HHHHHHHHHHHHhCCceEEEEEeeccc
Confidence 4578999999 4777666544 467999999999986533 244566678888898889999999994
No 402
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.47 E-value=0.0006 Score=78.66 Aligned_cols=64 Identities=27% Similarity=0.394 Sum_probs=39.9
Q ss_pred CeEEEEEeCCCccch----HHHHHHHH--HHcCEEEEEEECCCCccccccCCchhhHHHHHHHHH-hCCCeEEEEEecCC
Q psy15197 250 TKYITLLDAPGHKDF----IPNMITGA--TQADVALLVVDATRGEFETGFESGGQTREHALLVRS-LGVNQLGVVINKLD 322 (902)
Q Consensus 250 ~~~i~lIDTPG~~df----~~~~~~~l--~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~-~~i~~iIVviNKiD 322 (902)
++.+.||||||.... +.++.... ..+|.++||+|++.| ...........+ .++. -+++||+|
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~G---------q~a~~~a~~F~~~~~~~--g~IlTKlD 250 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIG---------QAAEAQAKAFKDSVDVG--SVIITKLD 250 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccC---------hhHHHHHHHHHhccCCc--EEEEECcc
Confidence 678999999997643 33333322 247889999999877 122333333332 3333 37899999
Q ss_pred CC
Q psy15197 323 TV 324 (902)
Q Consensus 323 l~ 324 (902)
-.
T Consensus 251 ~~ 252 (429)
T TIGR01425 251 GH 252 (429)
T ss_pred CC
Confidence 64
No 403
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.47 E-value=0.00017 Score=70.84 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=19.8
Q ss_pred EEEEEecCCCChhHHHhHHHH
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLY 48 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~ 48 (902)
+++++|.+|+|||||+|+|+.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~ 105 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVG 105 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 799999999999999999974
No 404
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.46 E-value=0.00036 Score=69.29 Aligned_cols=58 Identities=19% Similarity=0.276 Sum_probs=37.9
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCC
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLD 322 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiD 322 (902)
++.+.||||||.. ......+..||.+|+|+....+ .....++. .......+ +++||+|
T Consensus 91 ~~D~iiIDtaG~~---~~~~~~~~~Ad~~ivv~tpe~~----------D~y~~~k~-~~~~~~~~-~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVG---QSEVDIASMADTTVVVMAPGAG----------DDIQAIKA-GIMEIADI-VVVNKAD 148 (148)
T ss_pred CCCEEEEECCccC---hhhhhHHHhCCEEEEEECCCch----------hHHHHhhh-hHhhhcCE-EEEeCCC
Confidence 6789999999965 3345688999999999877633 22222221 11222234 8999998
No 405
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.43 E-value=0.00021 Score=76.95 Aligned_cols=84 Identities=14% Similarity=0.194 Sum_probs=52.9
Q ss_pred HHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCC
Q psy15197 268 MITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGF 347 (902)
Q Consensus 268 ~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~ 347 (902)
+...++.+|.+++|+|+++..+ + . ....+.+..+...+++ +|+|+||+||.+... .. .+....++..++
T Consensus 30 ~r~~~~n~D~viiV~d~~~p~~--s--~-~~l~r~l~~~~~~~i~-~vIV~NK~DL~~~~~--~~---~~~~~~~~~~g~ 98 (245)
T TIGR00157 30 TRPIVANIDQIVIVSSAVLPEL--S--L-NQLDRFLVVAEAQNIE-PIIVLNKIDLLDDED--ME---KEQLDIYRNIGY 98 (245)
T ss_pred ECcccccCCEEEEEEECCCCCC--C--H-HHHHHHHHHHHHCCCC-EEEEEECcccCCCHH--HH---HHHHHHHHHCCC
Confidence 3346889999999999987531 1 1 1223334444556666 558999999974211 11 111122333443
Q ss_pred CCCCceEecCCCccCCCCCC
Q psy15197 348 RDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 348 ~~~~~~ii~iSA~~G~gI~~ 367 (902)
+++.+||++|.|+++
T Consensus 99 -----~v~~~SAktg~gi~e 113 (245)
T TIGR00157 99 -----QVLMTSSKNQDGLKE 113 (245)
T ss_pred -----eEEEEecCCchhHHH
Confidence 789999999999988
No 406
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.42 E-value=0.00025 Score=79.47 Aligned_cols=26 Identities=38% Similarity=0.540 Sum_probs=23.3
Q ss_pred CcceEEEEEecCCCChhHHHhHHHHh
Q psy15197 24 KGRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 24 ~~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
+..++|.|||-+|+|||||+|+|+.+
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k 155 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGK 155 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcc
Confidence 45688999999999999999999855
No 407
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.41 E-value=0.00017 Score=78.68 Aligned_cols=21 Identities=43% Similarity=0.588 Sum_probs=19.2
Q ss_pred EEEEEecCCCChhHHHhHHHH
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLY 48 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~ 48 (902)
-.+++|+.|+|||||+|+|+-
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p 186 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLP 186 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCc
Confidence 478999999999999999974
No 408
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.40 E-value=0.00034 Score=79.68 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=21.3
Q ss_pred eEEEEEecCCCChhHHHhHHHHh
Q psy15197 27 LHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 27 ~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.+|++||.+|+|||||+|+|+..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~ 177 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQ 177 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhh
Confidence 68999999999999999999854
No 409
>KOG0082|consensus
Probab=97.39 E-value=0.00061 Score=76.16 Aligned_cols=89 Identities=17% Similarity=0.162 Sum_probs=62.4
Q ss_pred CCeEEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCc--hhhHHHHHHHHHh---
Q psy15197 235 RGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESG--GQTREHALLVRSL--- 309 (902)
Q Consensus 235 rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~--~qt~~~l~~l~~~--- 309 (902)
|--|..++...|..++..+.++|.+|++.-.+.++.....++++|||++.++--. ..++.. ....+.+.+....
T Consensus 179 R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq-~l~ED~~~NRM~eS~~LF~sI~n~ 257 (354)
T KOG0082|consen 179 RVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQ-VLEEDETTNRMHESLKLFESICNN 257 (354)
T ss_pred ccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhh-hcccccchhHHHHHHHHHHHHhcC
Confidence 4457777888999999999999999999999999999999999999999874210 000111 1122223333221
Q ss_pred ---CCCeEEEEEecCCCC
Q psy15197 310 ---GVNQLGVVINKLDTV 324 (902)
Q Consensus 310 ---~i~~iIVviNKiDl~ 324 (902)
.-..+|+++||.|+-
T Consensus 258 ~~F~~tsiiLFLNK~DLF 275 (354)
T KOG0082|consen 258 KWFANTSIILFLNKKDLF 275 (354)
T ss_pred cccccCcEEEEeecHHHH
Confidence 123588999999974
No 410
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.37 E-value=0.0015 Score=71.44 Aligned_cols=93 Identities=24% Similarity=0.342 Sum_probs=52.8
Q ss_pred CCeEEEEEeCCCccchHHHHH-------HHHH-----HcCEEEEEEECCCCccccccCCchhhHHHH-HHHHHhCCCeEE
Q psy15197 249 KTKYITLLDAPGHKDFIPNMI-------TGAT-----QADVALLVVDATRGEFETGFESGGQTREHA-LLVRSLGVNQLG 315 (902)
Q Consensus 249 ~~~~i~lIDTPG~~df~~~~~-------~~l~-----~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l-~~l~~~~i~~iI 315 (902)
.++.+.||||||....-...+ .... .+|.++||+|++.+ ....... ...+..++. -
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~---------~~~~~~~~~f~~~~~~~--g 221 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG---------QNALEQAKVFNEAVGLT--G 221 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC---------HHHHHHHHHHHhhCCCC--E
Confidence 367899999999764322222 1221 28999999999865 1222222 223334543 3
Q ss_pred EEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 316 VVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 316 VviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+++||+|.... .-.+... ....+ .|+.+++ +|++++.
T Consensus 222 ~IlTKlDe~~~----~G~~l~~----~~~~~-----~Pi~~~~--~Gq~~~d 258 (272)
T TIGR00064 222 IILTKLDGTAK----GGIILSI----AYELK-----LPIKFIG--VGEKIDD 258 (272)
T ss_pred EEEEccCCCCC----ccHHHHH----HHHHC-----cCEEEEe--CCCChHh
Confidence 78999997531 1111111 11223 3788877 7888755
No 411
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.30 E-value=0.00049 Score=71.64 Aligned_cols=66 Identities=20% Similarity=0.313 Sum_probs=40.6
Q ss_pred CeEEEEEeCCCccchH----HHHHHHHH--HcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCC
Q psy15197 250 TKYITLLDAPGHKDFI----PNMITGAT--QADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDT 323 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~----~~~~~~l~--~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl 323 (902)
++.+.||||||..... .++...+. ..+-++||+|++.+. .............++.. ++++|+|-
T Consensus 83 ~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~--------~~~~~~~~~~~~~~~~~--lIlTKlDe 152 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ--------EDLEQALAFYEAFGIDG--LILTKLDE 152 (196)
T ss_dssp TSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG--------HHHHHHHHHHHHSSTCE--EEEESTTS
T ss_pred CCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh--------HHHHHHHHHhhcccCce--EEEEeecC
Confidence 4679999999966532 23322222 478899999998761 12233334444456664 56999997
Q ss_pred CC
Q psy15197 324 VS 325 (902)
Q Consensus 324 ~~ 325 (902)
..
T Consensus 153 t~ 154 (196)
T PF00448_consen 153 TA 154 (196)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 412
>KOG1487|consensus
Probab=97.28 E-value=0.00044 Score=72.91 Aligned_cols=51 Identities=24% Similarity=0.269 Sum_probs=39.0
Q ss_pred EEeeeEEEEEECCeEEEEEeCCCccc-------hHHHHHHHHHHcCEEEEEEECCCCc
Q psy15197 238 TMDVGQSQFETKTKYITLLDAPGHKD-------FIPNMITGATQADVALLVVDATRGE 288 (902)
Q Consensus 238 Tid~~~~~~~~~~~~i~lIDTPG~~d-------f~~~~~~~l~~aD~aIlVVDa~~g~ 288 (902)
|.........+++-++.+.|.||+.+ .-++++...+.|.++++|+|+..+.
T Consensus 93 tl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcnli~~vld~~kp~ 150 (358)
T KOG1487|consen 93 TLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNLIFIVLDVLKPL 150 (358)
T ss_pred eEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecccEEEEEeeccCcc
Confidence 33344445667888999999999876 4556777778899999999998763
No 413
>PRK00098 GTPase RsgA; Reviewed
Probab=97.27 E-value=0.00057 Score=75.82 Aligned_cols=81 Identities=25% Similarity=0.345 Sum_probs=51.7
Q ss_pred HHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCC
Q psy15197 271 GATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDS 350 (902)
Q Consensus 271 ~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~ 350 (902)
.+..+|++++|+|+++..+. .....+.+..+...+++ +++|+||+|+.+. ..... +....++..++
T Consensus 77 iaaniD~vllV~d~~~p~~~-----~~~idr~L~~~~~~~ip-~iIVlNK~DL~~~-~~~~~----~~~~~~~~~g~--- 142 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFS-----TDLLDRFLVLAEANGIK-PIIVLNKIDLLDD-LEEAR----ELLALYRAIGY--- 142 (298)
T ss_pred eeecCCEEEEEEECCCCCCC-----HHHHHHHHHHHHHCCCC-EEEEEEhHHcCCC-HHHHH----HHHHHHHHCCC---
Confidence 36789999999999765321 11223344445566766 5599999999631 12212 22223334444
Q ss_pred CceEecCCCccCCCCCC
Q psy15197 351 DIEYVPCSGLTGENLTT 367 (902)
Q Consensus 351 ~~~ii~iSA~~G~gI~~ 367 (902)
+++++||++|.|+++
T Consensus 143 --~v~~vSA~~g~gi~~ 157 (298)
T PRK00098 143 --DVLELSAKEGEGLDE 157 (298)
T ss_pred --eEEEEeCCCCccHHH
Confidence 789999999999887
No 414
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.14 E-value=0.0014 Score=74.20 Aligned_cols=36 Identities=14% Similarity=0.194 Sum_probs=29.2
Q ss_pred eEEEEEeCCCccc-------hHHHHHHHHHHcCEEEEEEECCC
Q psy15197 251 KYITLLDAPGHKD-------FIPNMITGATQADVALLVVDATR 286 (902)
Q Consensus 251 ~~i~lIDTPG~~d-------f~~~~~~~l~~aD~aIlVVDa~~ 286 (902)
..+.++|.||..+ .....+.-++.+|++++|||+.+
T Consensus 67 a~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 67 TTTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred ceEEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 3678999999876 44467778899999999999964
No 415
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.10 E-value=0.0017 Score=73.83 Aligned_cols=39 Identities=23% Similarity=0.299 Sum_probs=27.7
Q ss_pred CCeEEEEEeCCCcc---chHHHHHHHHHH---cCEEEEEEECCCC
Q psy15197 249 KTKYITLLDAPGHK---DFIPNMITGATQ---ADVALLVVDATRG 287 (902)
Q Consensus 249 ~~~~i~lIDTPG~~---df~~~~~~~l~~---aD~aIlVVDa~~g 287 (902)
.++.++||||||.. ++....+..+.. ++-.+||++++.+
T Consensus 214 ~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~ 258 (374)
T PRK14722 214 RNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSH 258 (374)
T ss_pred cCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccC
Confidence 46789999999976 344455555543 3456999999876
No 416
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.10 E-value=0.00079 Score=74.30 Aligned_cols=23 Identities=39% Similarity=0.469 Sum_probs=20.8
Q ss_pred eEEEEEecCCCChhHHHhHHHHh
Q psy15197 27 LHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 27 ~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
..++++|++|+|||||+|+|+..
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~ 184 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPD 184 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhch
Confidence 46999999999999999999854
No 417
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.09 E-value=0.0021 Score=75.47 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.0
Q ss_pred ceEEEEEecCCCChhHHHhHHHHh
Q psy15197 26 RLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 26 ~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.-.|+|+|..|+|||||+..|...
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~ 373 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQR 373 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999754
No 418
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=97.09 E-value=0.00017 Score=83.08 Aligned_cols=88 Identities=19% Similarity=0.259 Sum_probs=58.4
Q ss_pred CCeEEeeeEEEEEE-CCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCc--hhhHHHHHHHHHh--
Q psy15197 235 RGITMDVGQSQFET-KTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESG--GQTREHALLVRSL-- 309 (902)
Q Consensus 235 rGiTid~~~~~~~~-~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~--~qt~~~l~~l~~~-- 309 (902)
|..|..+....|.. ++..+.|+|+.|++.-.+.++..+..++++|+||+.++-- +..++.. ....+.+.+....
T Consensus 219 r~~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~yd-q~~~ed~~~nrl~esl~lF~~i~~ 297 (389)
T PF00503_consen 219 RVKTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYD-QTLYEDPNTNRLHESLNLFESICN 297 (389)
T ss_dssp ----SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGG-SBESSSTTSBHHHHHHHHHHHHHT
T ss_pred cCCCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchh-hhhcccchHHHHHHHHHHHHHHHh
Confidence 44566667788888 9999999999999988888999999999999999976310 0011111 1233334333331
Q ss_pred ----CCCeEEEEEecCCC
Q psy15197 310 ----GVNQLGVVINKLDT 323 (902)
Q Consensus 310 ----~i~~iIVviNKiDl 323 (902)
.-.++|+++||+|+
T Consensus 298 ~~~~~~~~iil~lnK~D~ 315 (389)
T PF00503_consen 298 NPWFKNTPIILFLNKIDL 315 (389)
T ss_dssp SGGGTTSEEEEEEE-HHH
T ss_pred CcccccCceEEeeecHHH
Confidence 23568899999995
No 419
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.04 E-value=0.0011 Score=75.61 Aligned_cols=93 Identities=20% Similarity=0.221 Sum_probs=56.7
Q ss_pred cchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHh
Q psy15197 262 KDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAF 341 (902)
Q Consensus 262 ~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~ 341 (902)
++|..........++++++|+|+.+... ....+.... .+.+++++|+||+|+...+. ..+++.+.+...
T Consensus 51 e~f~~~l~~~~~~~~~Il~VvD~~d~~~-------s~~~~l~~~---~~~~piilV~NK~DLl~k~~-~~~~~~~~l~~~ 119 (360)
T TIGR03597 51 DDFLNLLNSLGDSNALIVYVVDIFDFEG-------SLIPELKRF---VGGNPVLLVGNKIDLLPKSV-NLSKIKEWMKKR 119 (360)
T ss_pred HHHHHHHhhcccCCcEEEEEEECcCCCC-------CccHHHHHH---hCCCCEEEEEEchhhCCCCC-CHHHHHHHHHHH
Confidence 4566655555578899999999976421 111222222 22345779999999975221 122333334444
Q ss_pred hhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 342 LKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 342 l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
++..++.. ..++.+||++|.|+++
T Consensus 120 ~k~~g~~~--~~i~~vSAk~g~gv~e 143 (360)
T TIGR03597 120 AKELGLKP--VDIILVSAKKGNGIDE 143 (360)
T ss_pred HHHcCCCc--CcEEEecCCCCCCHHH
Confidence 55555421 1478999999999998
No 420
>KOG0447|consensus
Probab=97.04 E-value=0.0051 Score=70.57 Aligned_cols=96 Identities=18% Similarity=0.243 Sum_probs=57.6
Q ss_pred cCCeEEeeeEEEEEECC---eEEEEEeCCCccc-------------hHHHHHHHHHHcCEEEEEEE-CCCCccccccCCc
Q psy15197 234 NRGITMDVGQSQFETKT---KYITLLDAPGHKD-------------FIPNMITGATQADVALLVVD-ATRGEFETGFESG 296 (902)
Q Consensus 234 ~rGiTid~~~~~~~~~~---~~i~lIDTPG~~d-------------f~~~~~~~l~~aD~aIlVVD-a~~g~~E~~~~~~ 296 (902)
..|.|+..-..++..++ -+..++|.||... ....+..++...+++||||- ++.. -| .
T Consensus 392 r~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVD-AE----R- 465 (980)
T KOG0447|consen 392 KEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVD-AE----R- 465 (980)
T ss_pred cCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcc-hh----h-
Confidence 45666666666666554 4789999999754 55666777788999998873 2211 00 0
Q ss_pred hhhHHHHHHHHHhCCCeEEEEEecCCCCCc---hHHHHHHHHH
Q psy15197 297 GQTREHALLVRSLGVNQLGVVINKLDTVSW---SQDRFQEIVT 336 (902)
Q Consensus 297 ~qt~~~l~~l~~~~i~~iIVviNKiDl~~~---~~~~~~~i~~ 336 (902)
..--.....+...|. ..|+|++|+|+++. ++.+++++++
T Consensus 466 SnVTDLVsq~DP~Gr-RTIfVLTKVDlAEknlA~PdRI~kIle 507 (980)
T KOG0447|consen 466 SIVTDLVSQMDPHGR-RTIFVLTKVDLAEKNVASPSRIQQIIE 507 (980)
T ss_pred hhHHHHHHhcCCCCC-eeEEEEeecchhhhccCCHHHHHHHHh
Confidence 001112222333453 46699999999753 4555555544
No 421
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.02 E-value=0.0064 Score=61.58 Aligned_cols=65 Identities=26% Similarity=0.446 Sum_probs=39.7
Q ss_pred CeEEEEEeCCCccc----hHHHHHHHH--HHcCEEEEEEECCCCccccccCCchhhHHH-HHHHHHhCCCeEEEEEecCC
Q psy15197 250 TKYITLLDAPGHKD----FIPNMITGA--TQADVALLVVDATRGEFETGFESGGQTREH-ALLVRSLGVNQLGVVINKLD 322 (902)
Q Consensus 250 ~~~i~lIDTPG~~d----f~~~~~~~l--~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~-l~~l~~~~i~~iIVviNKiD 322 (902)
++.+.||||||... .+....... ...|.+++|+|+..+ ....+. .......++. -+++||+|
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~---------~~~~~~~~~~~~~~~~~--~viltk~D 150 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTG---------QDAVNQAKAFNEALGIT--GVILTKLD 150 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCC---------hHHHHHHHHHHhhCCCC--EEEEECCc
Confidence 56788999999853 333332222 238999999999654 122222 2333344543 36789999
Q ss_pred CCC
Q psy15197 323 TVS 325 (902)
Q Consensus 323 l~~ 325 (902)
...
T Consensus 151 ~~~ 153 (173)
T cd03115 151 GDA 153 (173)
T ss_pred CCC
Confidence 764
No 422
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=96.98 E-value=0.0013 Score=72.47 Aligned_cols=79 Identities=19% Similarity=0.174 Sum_probs=49.9
Q ss_pred HHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCC
Q psy15197 272 ATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSD 351 (902)
Q Consensus 272 l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~ 351 (902)
+..+|.+++|+|+.++.+. . ....+.+..+...+++ +++|+||+|+.+.. ... .. .......+
T Consensus 76 ~anvD~vllV~d~~~p~~s----~-~~ldr~L~~~~~~~ip-~iIVlNK~DL~~~~--~~~---~~-~~~~~~~g----- 138 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFN----P-RLLDRYLVAAEAAGIE-PVIVLTKADLLDDE--EEE---LE-LVEALALG----- 138 (287)
T ss_pred EEeCCEEEEEEEcCCCCCC----H-HHHHHHHHHHHHcCCC-EEEEEEHHHCCChH--HHH---HH-HHHHHhCC-----
Confidence 5678999999999876310 1 1223344445566766 55999999997521 111 11 11122233
Q ss_pred ceEecCCCccCCCCCC
Q psy15197 352 IEYVPCSGLTGENLTT 367 (902)
Q Consensus 352 ~~ii~iSA~~G~gI~~ 367 (902)
.+++++||++|.|+++
T Consensus 139 ~~v~~vSA~~g~gi~~ 154 (287)
T cd01854 139 YPVLAVSAKTGEGLDE 154 (287)
T ss_pred CeEEEEECCCCccHHH
Confidence 3889999999999887
No 423
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=96.97 E-value=0.0027 Score=63.07 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=21.6
Q ss_pred cceEEEEEecCCCChhHHHhHHHH
Q psy15197 25 GRLHLVVIGHVDAGKSTLMGHLLY 48 (902)
Q Consensus 25 ~~~~v~v~G~~~~GKstL~~~ll~ 48 (902)
...+++++|.+|+|||||+|+|+.
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~ 123 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKG 123 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 457899999999999999999973
No 424
>KOG2485|consensus
Probab=96.97 E-value=0.0014 Score=71.23 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=24.5
Q ss_pred cCCCcceEEEEEecCCCChhHHHhHHHHh
Q psy15197 21 AGGKGRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 21 ~~~~~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
...+.+.+|-|+|-||+|||||+|++-..
T Consensus 138 rt~~~~~~vmVvGvPNVGKSsLINa~r~~ 166 (335)
T KOG2485|consen 138 RTLNSEYNVMVVGVPNVGKSSLINALRNV 166 (335)
T ss_pred cccCCceeEEEEcCCCCChHHHHHHHHHH
Confidence 33567889999999999999999998543
No 425
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.90 E-value=0.0037 Score=71.01 Aligned_cols=66 Identities=18% Similarity=0.255 Sum_probs=42.8
Q ss_pred CeEEEEEeCCCccc----hHHHHHHHHH--HcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCC
Q psy15197 250 TKYITLLDAPGHKD----FIPNMITGAT--QADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDT 323 (902)
Q Consensus 250 ~~~i~lIDTPG~~d----f~~~~~~~l~--~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl 323 (902)
++.+.||||||... .+.+....+. ..+.++||+|++.+. ......+......++.. ++++|+|-
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--------~d~~~i~~~F~~~~idg--lI~TKLDE 389 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--------KDMIEIITNFKDIHIDG--IVFTKFDE 389 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--------HHHHHHHHHhcCCCCCE--EEEEcccC
Confidence 45789999999754 3444444443 367889999987541 13345555555566664 57999997
Q ss_pred CC
Q psy15197 324 VS 325 (902)
Q Consensus 324 ~~ 325 (902)
..
T Consensus 390 T~ 391 (436)
T PRK11889 390 TA 391 (436)
T ss_pred CC
Confidence 53
No 426
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.81 E-value=0.015 Score=67.71 Aligned_cols=63 Identities=32% Similarity=0.569 Sum_probs=38.7
Q ss_pred eEEEEEeCCCccchHHHH------HHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHH-HhCCCeEEEEEecCCC
Q psy15197 251 KYITLLDAPGHKDFIPNM------ITGATQADVALLVVDATRGEFETGFESGGQTREHALLVR-SLGVNQLGVVINKLDT 323 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~------~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~-~~~i~~iIVviNKiDl 323 (902)
+.+.||||||....-... +..+..+|.++||+|++.+ ........... ..++. -+++||+|-
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~g---------q~av~~a~~F~~~l~i~--gvIlTKlD~ 244 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIG---------QQAKNQAKAFHEAVGIG--GIIITKLDG 244 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEecccc---------HHHHHHHHHHHhcCCCC--EEEEecccC
Confidence 368999999976543332 2334468999999999876 12222222222 23332 368899996
Q ss_pred C
Q psy15197 324 V 324 (902)
Q Consensus 324 ~ 324 (902)
.
T Consensus 245 ~ 245 (437)
T PRK00771 245 T 245 (437)
T ss_pred C
Confidence 4
No 427
>KOG1491|consensus
Probab=96.79 E-value=0.0037 Score=68.62 Aligned_cols=37 Identities=19% Similarity=0.299 Sum_probs=29.0
Q ss_pred eEEEEEeCCCccc-------hHHHHHHHHHHcCEEEEEEECCCC
Q psy15197 251 KYITLLDAPGHKD-------FIPNMITGATQADVALLVVDATRG 287 (902)
Q Consensus 251 ~~i~lIDTPG~~d-------f~~~~~~~l~~aD~aIlVVDa~~g 287 (902)
-.+++.|++|+.+ .-..-++-++.+|+++-||++...
T Consensus 84 a~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~d 127 (391)
T KOG1491|consen 84 AFLTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFED 127 (391)
T ss_pred eeEEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecCc
Confidence 3689999999876 334455667889999999998753
No 428
>PRK00098 GTPase RsgA; Reviewed
Probab=96.79 E-value=0.0015 Score=72.51 Aligned_cols=22 Identities=36% Similarity=0.375 Sum_probs=20.0
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.++++|++|+|||||+|+|+..
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~ 187 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPD 187 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999844
No 429
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.76 E-value=0.0048 Score=67.59 Aligned_cols=78 Identities=21% Similarity=0.302 Sum_probs=56.7
Q ss_pred cCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceE
Q psy15197 275 ADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEY 354 (902)
Q Consensus 275 aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~i 354 (902)
.|-+|+|+.+..+.+. .....+.+-.+...++.++ ||+||+|+.+.. .... ++....+..+++ ++
T Consensus 80 ~d~~iiIvs~~~P~~~-----~~~ldR~Lv~ae~~gi~pv-IvlnK~DL~~~~--~~~~--~~~~~~y~~~gy-----~v 144 (301)
T COG1162 80 NDQAIIVVSLVDPDFN-----TNLLDRYLVLAEAGGIEPV-IVLNKIDLLDDE--EAAV--KELLREYEDIGY-----PV 144 (301)
T ss_pred cceEEEEEeccCCCCC-----HHHHHHHHHHHHHcCCcEE-EEEEccccCcch--HHHH--HHHHHHHHhCCe-----eE
Confidence 6888999999888652 1344556667777899887 789999998632 2221 445555667777 89
Q ss_pred ecCCCccCCCCCC
Q psy15197 355 VPCSGLTGENLTT 367 (902)
Q Consensus 355 i~iSA~~G~gI~~ 367 (902)
+.+|+++++|+.+
T Consensus 145 ~~~s~~~~~~~~~ 157 (301)
T COG1162 145 LFVSAKNGDGLEE 157 (301)
T ss_pred EEecCcCcccHHH
Confidence 9999999999887
No 430
>KOG0780|consensus
Probab=96.70 E-value=0.0081 Score=66.98 Aligned_cols=66 Identities=26% Similarity=0.458 Sum_probs=43.0
Q ss_pred EEECCeEEEEEeCCCccc----hHHHHHHHHH--HcCEEEEEEECCCCccccccCCchhhHHH-HHHHH-HhCCCeEEEE
Q psy15197 246 FETKTKYITLLDAPGHKD----FIPNMITGAT--QADVALLVVDATRGEFETGFESGGQTREH-ALLVR-SLGVNQLGVV 317 (902)
Q Consensus 246 ~~~~~~~i~lIDTPG~~d----f~~~~~~~l~--~aD~aIlVVDa~~g~~E~~~~~~~qt~~~-l~~l~-~~~i~~iIVv 317 (902)
|.-+++.++|+||.|-+. ...++..... ..|-+|+|+||+-| |..+. ....+ ..++- -|+
T Consensus 179 fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiG----------Qaae~Qa~aFk~~vdvg--~vI 246 (483)
T KOG0780|consen 179 FKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIG----------QAAEAQARAFKETVDVG--AVI 246 (483)
T ss_pred HHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEecccc----------HhHHHHHHHHHHhhccc--eEE
Confidence 344578999999999765 4444444443 48999999999987 44332 22222 22333 368
Q ss_pred EecCCC
Q psy15197 318 INKLDT 323 (902)
Q Consensus 318 iNKiDl 323 (902)
+||+|-
T Consensus 247 lTKlDG 252 (483)
T KOG0780|consen 247 LTKLDG 252 (483)
T ss_pred EEeccc
Confidence 999994
No 431
>PRK01889 GTPase RsgA; Reviewed
Probab=96.70 E-value=0.0046 Score=70.37 Aligned_cols=78 Identities=22% Similarity=0.352 Sum_probs=52.4
Q ss_pred HHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCC
Q psy15197 272 ATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSD 351 (902)
Q Consensus 272 l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~ 351 (902)
+..+|.+++|+++... +. . ......+..+...+++++ ||+||+||++. .++..+.+..+ ..+
T Consensus 110 aANvD~vliV~s~~p~-~~----~-~~ldr~L~~a~~~~i~pi-IVLNK~DL~~~----~~~~~~~~~~~--~~g----- 171 (356)
T PRK01889 110 AANVDTVFIVCSLNHD-FN----L-RRIERYLALAWESGAEPV-IVLTKADLCED----AEEKIAEVEAL--APG----- 171 (356)
T ss_pred EEeCCEEEEEEecCCC-CC----h-hHHHHHHHHHHHcCCCEE-EEEEChhcCCC----HHHHHHHHHHh--CCC-----
Confidence 4678999999999754 21 1 244556666777898875 89999999852 11122223222 223
Q ss_pred ceEecCCCccCCCCCC
Q psy15197 352 IEYVPCSGLTGENLTT 367 (902)
Q Consensus 352 ~~ii~iSA~~G~gI~~ 367 (902)
++++++|+++|.|+.+
T Consensus 172 ~~Vi~vSa~~g~gl~~ 187 (356)
T PRK01889 172 VPVLAVSALDGEGLDV 187 (356)
T ss_pred CcEEEEECCCCccHHH
Confidence 4889999999999887
No 432
>KOG0099|consensus
Probab=96.66 E-value=0.003 Score=66.78 Aligned_cols=89 Identities=18% Similarity=0.248 Sum_probs=63.2
Q ss_pred cCCeEEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCcccccc-CCc--hhhHHHHHHHHHh-
Q psy15197 234 NRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGF-ESG--GQTREHALLVRSL- 309 (902)
Q Consensus 234 ~rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~-~~~--~qt~~~l~~l~~~- 309 (902)
-|-+|.......|..+...+...|..|++|-...++......-++|+|+.++.--+ -+ +.. ...++.+.+.+..
T Consensus 185 cRvlTsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~--vlrED~~qNRL~EaL~LFksiW 262 (379)
T KOG0099|consen 185 CRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNM--VLREDNQQNRLQEALNLFKSIW 262 (379)
T ss_pred hhhhccceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhh--hhhcCCchhHHHHHHHHHHHHH
Confidence 35567777778888899999999999999999999999999999999998874211 00 011 1223444443332
Q ss_pred -----CCCeEEEEEecCCCC
Q psy15197 310 -----GVNQLGVVINKLDTV 324 (902)
Q Consensus 310 -----~i~~iIVviNKiDl~ 324 (902)
..-.+|+++||.|+.
T Consensus 263 nNRwL~tisvIlFLNKqDll 282 (379)
T KOG0099|consen 263 NNRWLRTISVILFLNKQDLL 282 (379)
T ss_pred hhhHHhhhheeEEecHHHHH
Confidence 112377999999986
No 433
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=96.64 E-value=0.0097 Score=67.30 Aligned_cols=21 Identities=48% Similarity=0.698 Sum_probs=18.5
Q ss_pred EEEEecCCCChhHHHhHHHHh
Q psy15197 29 LVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 29 v~v~G~~~~GKstL~~~ll~~ 49 (902)
.+|.|-.|||||||+++||..
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 7 TIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 568899999999999999953
No 434
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.64 E-value=0.0053 Score=71.38 Aligned_cols=65 Identities=18% Similarity=0.206 Sum_probs=39.8
Q ss_pred CeEEEEEeCCCccch----HHHHHHHHH---HcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCC
Q psy15197 250 TKYITLLDAPGHKDF----IPNMITGAT---QADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLD 322 (902)
Q Consensus 250 ~~~i~lIDTPG~~df----~~~~~~~l~---~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiD 322 (902)
++.+.||||||.... .......+. ...-+.||++++.+. ....+.+......++.. +++||+|
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~--------~~l~~~~~~f~~~~~~~--vI~TKlD 368 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY--------EDLKDIYKHFSRLPLDG--LIFTKLD 368 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH--------HHHHHHHHHhCCCCCCE--EEEeccc
Confidence 578999999998542 223333333 234678899998652 13344444444445433 6899999
Q ss_pred CC
Q psy15197 323 TV 324 (902)
Q Consensus 323 l~ 324 (902)
-.
T Consensus 369 et 370 (424)
T PRK05703 369 ET 370 (424)
T ss_pred cc
Confidence 64
No 435
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.61 E-value=0.0053 Score=70.91 Aligned_cols=67 Identities=19% Similarity=0.238 Sum_probs=40.7
Q ss_pred CCeEEEEEeCCCccchHHHHH---HHHH---HcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCC
Q psy15197 249 KTKYITLLDAPGHKDFIPNMI---TGAT---QADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLD 322 (902)
Q Consensus 249 ~~~~i~lIDTPG~~df~~~~~---~~l~---~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiD 322 (902)
.++.+.+|||+|......... ..+. ...-.+||+|++.+. ....+.+......++.. +++||+|
T Consensus 268 ~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~--------~~~~~~~~~f~~~~~~~--~I~TKlD 337 (420)
T PRK14721 268 RGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSG--------DTLDEVISAYQGHGIHG--CIITKVD 337 (420)
T ss_pred cCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCH--------HHHHHHHHHhcCCCCCE--EEEEeee
Confidence 467889999999765333222 2222 234678999998651 12333444444456554 5799999
Q ss_pred CCC
Q psy15197 323 TVS 325 (902)
Q Consensus 323 l~~ 325 (902)
-..
T Consensus 338 Et~ 340 (420)
T PRK14721 338 EAA 340 (420)
T ss_pred CCC
Confidence 653
No 436
>PRK12288 GTPase RsgA; Reviewed
Probab=96.60 E-value=0.0069 Score=68.61 Aligned_cols=81 Identities=19% Similarity=0.240 Sum_probs=49.7
Q ss_pred HHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCC
Q psy15197 272 ATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSD 351 (902)
Q Consensus 272 l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~ 351 (902)
...+|.+++|.+.... + +.. .....+..+...++++ |+|+||+|+.+.. ....+ .+....++..++
T Consensus 118 aANvD~vlIV~s~~p~-~----s~~-~Ldr~L~~a~~~~i~~-VIVlNK~DL~~~~--~~~~~-~~~~~~y~~~g~---- 183 (347)
T PRK12288 118 AANIDQIVIVSAVLPE-L----SLN-IIDRYLVACETLGIEP-LIVLNKIDLLDDE--GRAFV-NEQLDIYRNIGY---- 183 (347)
T ss_pred EEEccEEEEEEeCCCC-C----CHH-HHHHHHHHHHhcCCCE-EEEEECccCCCcH--HHHHH-HHHHHHHHhCCC----
Confidence 3568999988887643 1 111 2233344455567775 5899999997522 11111 222223344444
Q ss_pred ceEecCCCccCCCCCC
Q psy15197 352 IEYVPCSGLTGENLTT 367 (902)
Q Consensus 352 ~~ii~iSA~~G~gI~~ 367 (902)
+++++||++|.|+++
T Consensus 184 -~v~~vSA~tg~Gide 198 (347)
T PRK12288 184 -RVLMVSSHTGEGLEE 198 (347)
T ss_pred -eEEEEeCCCCcCHHH
Confidence 889999999999988
No 437
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.58 E-value=0.0021 Score=75.35 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=20.2
Q ss_pred eEEEEEecCCCChhHHHhHHHHh
Q psy15197 27 LHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 27 ~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
--+++||..|+||||++..|...
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHH
Confidence 35999999999999999999744
No 438
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=96.55 E-value=0.013 Score=70.72 Aligned_cols=182 Identities=15% Similarity=0.165 Sum_probs=116.2
Q ss_pred EEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEe-cCCCCCchHHHHHH
Q psy15197 255 LLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVIN-KLDTVSWSQDRFQE 333 (902)
Q Consensus 255 lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviN-KiDl~~~~~~~~~~ 333 (902)
=-||-|-.+-+...+..+...+.-+=|+.+.-|. -++..+.++...+ .+|+..| |++. ..+
T Consensus 391 kad~~Gs~eal~~~l~~~~~~~~~~~v~~~~vG~---------i~~~Dv~~a~~~~--a~i~~Fnv~~~~------~~~- 452 (587)
T TIGR00487 391 KADVQGSLEAIKNSLEKLNNEEVKVKVIHSGVGG---------ITETDISLASASN--AIIIGFNVRPDA------TAK- 452 (587)
T ss_pred EeCCcchHHHHHHHHHhhcccCCeEEEEEeecCC---------CchhhHHHHHhcC--CEEEEEecCCCH------HHH-
Confidence 3477777777777777776667777777777663 3444444555544 2445555 3331 111
Q ss_pred HHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCcccHHHHHHhcCCCCCCCCCCceEEEeeEEeeCC
Q psy15197 334 IVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNFKTPSRPLTKPLRMSVSDIYKSTG 413 (902)
Q Consensus 334 i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L~~l~~p~~~~~~pl~~~I~~i~~v~g 413 (902)
...+..+. +++.-+- |-++.+ .+.+.+..+.+|......--...|..+|+.+.
T Consensus 453 ------~~a~~~~v-----~i~~~~i-----IY~l~d-----------~~~~~~~~~~~~~~~~~~~g~a~v~~vf~~~~ 505 (587)
T TIGR00487 453 ------NVAEAENV-----DIRYYSV-----IYKLID-----------EIRAAMKGMLDPEYEEEIIGQAEVRQVFNVPK 505 (587)
T ss_pred ------HHHHHcCC-----eEEEeCh-----HHHHHH-----------HHHHHHHhccCcceeeEeeeeEEEEEEEecCC
Confidence 11222232 3332111 111000 13334444444443222223566778999988
Q ss_pred CeEEEEEEEEeeEeeCCCEEEEccCCcE---EEEEEEEEceEeeeeeccCCeEEEeeeccccccceeeccccC
Q psy15197 414 SGYCIAGRVETGVILAGEKVMVQPQNEV---TTVKAVYVDEMSVSAAYAGDNVSVTLLNYDQQNVSVGFLLSE 483 (902)
Q Consensus 414 ~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~---~~V~sI~~~~~~v~~a~aGdiv~I~l~~~~~~~i~kG~vL~~ 483 (902)
.|.|+..+|..|+|+.|..+.+...+.. .+|.|+..++..++++..|+-|+|.+.++ .+++.|++|..
T Consensus 506 ~~~iaG~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~~g~ecgi~~~~~--~~~~~gD~i~~ 576 (587)
T TIGR00487 506 IGNIAGCYVTEGVIKRGNPLRVIRDGVVIFEGEIDSLKRFKDDVKEVSNGYECGIGIKNY--NDIKEGDIIEA 576 (587)
T ss_pred CCEEEEEEEecCEEecCCeEEEEeCCEEEEeccchHhhccCccccEECCCCEEEEEEecc--ccCCCCCEEEE
Confidence 8999999999999999999999887764 35778888899999999999999999765 78899998853
No 439
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=96.54 E-value=0.016 Score=71.90 Aligned_cols=181 Identities=16% Similarity=0.212 Sum_probs=117.5
Q ss_pred EeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEe-cCCCCCchHHHHHHH
Q psy15197 256 LDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVIN-KLDTVSWSQDRFQEI 334 (902)
Q Consensus 256 IDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviN-KiDl~~~~~~~~~~i 334 (902)
-|+-|..+-+...+..+..-++-+=|+.+.-|. -++.-+.++...+ -+|+..| |.+. ..+.
T Consensus 594 ad~~Gs~eai~~~l~~l~~~~v~~~i~~~~vG~---------it~~Dv~la~~~~--a~ii~Fnv~~~~------~~~~- 655 (787)
T PRK05306 594 ADVQGSVEALKDSLEKLSTDEVKVNIIHSGVGA---------ITESDVTLAAASN--AIIIGFNVRPDA------KARK- 655 (787)
T ss_pred eCCcchHHHHHHHHHhhcccCCceEEEeeccCC---------CCHHHHHHHHhcC--CEEEEEcCCCCH------HHHH-
Confidence 477787777777777777777777788777663 3444444555544 2445555 3331 1111
Q ss_pred HHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCcccHHHHHHhcCCCCCCCCCCceEEEeeEEeeCCC
Q psy15197 335 VTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNFKTPSRPLTKPLRMSVSDIYKSTGS 414 (902)
Q Consensus 335 ~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L~~l~~p~~~~~~pl~~~I~~i~~v~g~ 414 (902)
..+..++ .+..-+-.. .-+++ +.+++..++.|.....---.+.|..+|+.+..
T Consensus 656 ------~a~~~~v-----~i~~~~iIY-~l~d~---------------~~~~~~~~l~~~~~e~~~g~a~v~~vF~~~k~ 708 (787)
T PRK05306 656 ------LAEQEGV-----DIRYYSIIY-DLIDD---------------VKAAMSGMLEPEYEEEIIGQAEVREVFKVSKV 708 (787)
T ss_pred ------HHHHcCC-----EEEEeChHH-HHHHH---------------HHHHHhhccCchhheeeeeeEEEEEEEecCCC
Confidence 1222222 333211100 00111 33344444444433222335677899999999
Q ss_pred eEEEEEEEEeeEeeCCCEEEEccCCcE---EEEEEEEEceEeeeeeccCCeEEEeeeccccccceeeccccC
Q psy15197 415 GYCIAGRVETGVILAGEKVMVQPQNEV---TTVKAVYVDEMSVSAAYAGDNVSVTLLNYDQQNVSVGFLLSE 483 (902)
Q Consensus 415 G~V~~GrV~sG~Lk~Gd~v~l~p~~~~---~~V~sI~~~~~~v~~a~aGdiv~I~l~~~~~~~i~kG~vL~~ 483 (902)
|.|+..+|..|.|+.|..+.+...+.. .+|.|+..+...+.++..|.-|+|.+.++ .+++.|++|..
T Consensus 709 ~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~v~ev~~g~ecgi~~~~~--~d~~~gD~ie~ 778 (787)
T PRK05306 709 GTIAGCMVTEGKIKRNAKVRVLRDGVVIYEGELESLKRFKDDVKEVRAGYECGIGLENY--NDIKEGDIIEA 778 (787)
T ss_pred CeEEEEEEeeCEEecCCeEEEEeCCEEEEEeEEehhcccCcCccEeCCCCEEEEEeecc--ccCCCCCEEEE
Confidence 999999999999999999999988774 45778888899999999999999999876 68899998853
No 440
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=96.54 E-value=0.016 Score=64.77 Aligned_cols=90 Identities=21% Similarity=0.218 Sum_probs=48.2
Q ss_pred eEEEEEeCCCccch-------HH-HHHHHHHHcCEEEEEEECCCCccccccCCchhh--HHHHHHHHHhCCCeEEEEEec
Q psy15197 251 KYITLLDAPGHKDF-------IP-NMITGATQADVALLVVDATRGEFETGFESGGQT--REHALLVRSLGVNQLGVVINK 320 (902)
Q Consensus 251 ~~i~lIDTPG~~df-------~~-~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt--~~~l~~l~~~~i~~iIVviNK 320 (902)
....+|.|-|..+= .. ..+...-.-|.+|-|||+..... ... .+.. ..+...--+ |++||
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~-------~~~~~~~~~--~~Qia~AD~-ivlNK 154 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLE-------GLDAIAELA--EDQLAFADV-IVLNK 154 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhh-------hHHHHHHHH--HHHHHhCcE-EEEec
Confidence 45789999998772 11 11122234688999999986521 111 1111 111222224 89999
Q ss_pred CCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCC
Q psy15197 321 LDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSG 359 (902)
Q Consensus 321 iDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA 359 (902)
.|+++. +.++.+ +..+..++- ..+++..|.
T Consensus 155 ~Dlv~~--~~l~~l----~~~l~~lnp---~A~i~~~~~ 184 (323)
T COG0523 155 TDLVDA--EELEAL----EARLRKLNP---RARIIETSY 184 (323)
T ss_pred ccCCCH--HHHHHH----HHHHHHhCC---CCeEEEccc
Confidence 999973 223333 333333332 246777665
No 441
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=96.51 E-value=0.0047 Score=63.20 Aligned_cols=66 Identities=24% Similarity=0.271 Sum_probs=35.1
Q ss_pred eEEEEEeCCCccchH-----HHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCC
Q psy15197 251 KYITLLDAPGHKDFI-----PNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVS 325 (902)
Q Consensus 251 ~~i~lIDTPG~~df~-----~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~ 325 (902)
....||-|.|..+-. .......-..+.+|.|||+..-.. ..... .....+...-.+ |++||+|+++
T Consensus 85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~-------~~~~~-~~~~~Qi~~ADv-IvlnK~D~~~ 155 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDE-------LENIP-ELLREQIAFADV-IVLNKIDLVS 155 (178)
T ss_dssp -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGG-------HTTHC-HHHHHHHCT-SE-EEEE-GGGHH
T ss_pred cCEEEECCccccccchhhhccccccccccccceeEEeccccccc-------cccch-hhhhhcchhcCE-EEEeccccCC
Confidence 346678888865521 122222335789999999965210 11111 112233333345 8999999985
No 442
>PRK13796 GTPase YqeH; Provisional
Probab=96.48 E-value=0.0072 Score=69.01 Aligned_cols=89 Identities=21% Similarity=0.185 Sum_probs=52.7
Q ss_pred HHHHHHHHHcC-EEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhh
Q psy15197 266 PNMITGATQAD-VALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQ 344 (902)
Q Consensus 266 ~~~~~~l~~aD-~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~ 344 (902)
..++..+..+| ++++|||+.+... .....+... .+.+++++|+||+|+.+.+. ..+++.+.+..+.+.
T Consensus 60 ~~~l~~i~~~~~lIv~VVD~~D~~~--------s~~~~L~~~--~~~kpviLViNK~DLl~~~~-~~~~i~~~l~~~~k~ 128 (365)
T PRK13796 60 LKLLNGIGDSDALVVNVVDIFDFNG--------SWIPGLHRF--VGNNPVLLVGNKADLLPKSV-KKNKVKNWLRQEAKE 128 (365)
T ss_pred HHHHHhhcccCcEEEEEEECccCCC--------chhHHHHHH--hCCCCEEEEEEchhhCCCcc-CHHHHHHHHHHHHHh
Confidence 34677777767 9999999987421 122222211 22345779999999975211 112222333334444
Q ss_pred cCCCCCCceEecCCCccCCCCCC
Q psy15197 345 AGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 345 ~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.++.. ..++.+||++|.|+.+
T Consensus 129 ~g~~~--~~v~~vSAk~g~gI~e 149 (365)
T PRK13796 129 LGLRP--VDVVLISAQKGHGIDE 149 (365)
T ss_pred cCCCc--CcEEEEECCCCCCHHH
Confidence 45421 2578999999999998
No 443
>KOG0465|consensus
Probab=96.44 E-value=0.0005 Score=79.96 Aligned_cols=126 Identities=19% Similarity=0.216 Sum_probs=106.7
Q ss_pred cceEEEEEecCCCChhHHHhHHHHhccccchhhhccchhhhhhcccccceeeeeccccCcccccCCccccCCCCCCCCcc
Q psy15197 25 GRLHLVVIGHVDAGKSTLMGHLLYLMGRVSAREIHKHETESKKLGKQSFMYAWILDETGEESSCEIPVDTTSAGNPVDSE 104 (902)
Q Consensus 25 ~~~~v~v~G~~~~GKstL~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 104 (902)
..+||+|+.|-|||||||.++.|+-+|.+..--..+ |+ .-+||.++.|++|+||+++..+
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~--------~~-----~a~md~m~~er~rgITiqSAAt------- 97 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVR--------GG-----GATMDSMELERQRGITIQSAAT------- 97 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccc--------cC-----ceeeehHHHHHhcCceeeecee-------
Confidence 457999999999999999999999988765321111 11 4578999999999999999875
Q ss_pred ccccccCCCCCCCCcchhhhhccccccCCCCccchhcccCCCCc------cccccchhhhccCCCCCCCCCccccccccc
Q psy15197 105 TIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAF------GYFEDRETIIKTIGPHGPVPLEDTYYLDKL 178 (902)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (902)
+.-|. -..++.||+++|+++...++|++++.+|+.. |...+++++.+|+++|+.+...+++.+|+.
T Consensus 98 ~~~w~--------~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRm 169 (721)
T KOG0465|consen 98 YFTWR--------DYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRM 169 (721)
T ss_pred eeeec--------cceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhc
Confidence 22333 4578899999999999999999999999944 889999999999999999999999999985
No 444
>KOG4423|consensus
Probab=96.43 E-value=0.00086 Score=67.52 Aligned_cols=104 Identities=22% Similarity=0.239 Sum_probs=68.3
Q ss_pred EEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh----CCC-eEEEEEecCCCCCc
Q psy15197 252 YITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL----GVN-QLGVVINKLDTVSW 326 (902)
Q Consensus 252 ~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~----~i~-~iIVviNKiDl~~~ 326 (902)
++.|||.+|+++|-..+.-+.+.+.++.+|+|.+...++ +-....+..+ ...+ |.| ++|+..||+|...+
T Consensus 76 RlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~tf---e~~skwkqdl--dsk~qLpng~Pv~~vllankCd~e~~ 150 (229)
T KOG4423|consen 76 RLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTF---EPVSKWKQDL--DSKLQLPNGTPVPCVLLANKCDQEKS 150 (229)
T ss_pred HHHHhcchhhhhhcceEEEEecCCcceEEEEEccccccc---cHHHHHHHhc--cCcccCCCCCcchheeccchhccChH
Confidence 678999999999988888889999999999999876432 1111111111 1111 222 35577899997532
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 327 SQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 327 ~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
. ..+.-..+.++-+.-|+. -.+.+|++.+.+|++
T Consensus 151 a---~~~~~~~~d~f~kengf~----gwtets~Kenkni~E 184 (229)
T KOG4423|consen 151 A---KNEATRQFDNFKKENGFE----GWTETSAKENKNIPE 184 (229)
T ss_pred h---hhhhHHHHHHHHhccCcc----ceeeeccccccChhH
Confidence 1 122223344455556664 468999999999998
No 445
>KOG2743|consensus
Probab=96.39 E-value=0.0022 Score=69.07 Aligned_cols=26 Identities=31% Similarity=0.529 Sum_probs=19.9
Q ss_pred CcceEE-EEEecCCCChhHHHhHHHHh
Q psy15197 24 KGRLHL-VVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 24 ~~~~~v-~v~G~~~~GKstL~~~ll~~ 49 (902)
..++-| .|-|--|||||||+|++|.+
T Consensus 54 ~~rIPvtIITGyLGaGKtTLLn~Il~~ 80 (391)
T KOG2743|consen 54 GARIPVTIITGYLGAGKTTLLNYILTG 80 (391)
T ss_pred CCccceEEEEecccCChHHHHHHHHcc
Confidence 334433 46799999999999999954
No 446
>KOG1534|consensus
Probab=96.39 E-value=0.0076 Score=62.15 Aligned_cols=40 Identities=18% Similarity=0.145 Sum_probs=29.8
Q ss_pred EEEEEecCCCChhHHHhHHHHhccccchhhhccchhhhhh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYLMGRVSAREIHKHETESKK 67 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~~~~~~~~~~~~~~~~~~~ 67 (902)
-+-|+|+-||||||.|+.+..-|..+.++.-...-++|++
T Consensus 5 a~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAae 44 (273)
T KOG1534|consen 5 AQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAAE 44 (273)
T ss_pred eEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHHHH
Confidence 4668999999999999999888766665544444455544
No 447
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.37 E-value=0.015 Score=66.83 Aligned_cols=65 Identities=22% Similarity=0.219 Sum_probs=40.7
Q ss_pred CeEEEEEeCCCccc----hHHHHHHHHHH-----cCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEec
Q psy15197 250 TKYITLLDAPGHKD----FIPNMITGATQ-----ADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINK 320 (902)
Q Consensus 250 ~~~i~lIDTPG~~d----f~~~~~~~l~~-----aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNK 320 (902)
++.+.||||||... -+..+...+.. ..-.+||+|++.+. ......+......++.. ++++|
T Consensus 299 ~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--------~~~~~~~~~f~~~~~~g--lIlTK 368 (432)
T PRK12724 299 GSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--------HHTLTVLKAYESLNYRR--ILLTK 368 (432)
T ss_pred CCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--------HHHHHHHHHhcCCCCCE--EEEEc
Confidence 56789999999753 23333332322 33688999999772 13344444445556664 57999
Q ss_pred CCCC
Q psy15197 321 LDTV 324 (902)
Q Consensus 321 iDl~ 324 (902)
+|-.
T Consensus 369 LDEt 372 (432)
T PRK12724 369 LDEA 372 (432)
T ss_pred ccCC
Confidence 9965
No 448
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.34 E-value=0.023 Score=64.61 Aligned_cols=67 Identities=18% Similarity=0.199 Sum_probs=43.7
Q ss_pred CCeEEEEEeCCCccc----hHHHHHHHHHH--cCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCC
Q psy15197 249 KTKYITLLDAPGHKD----FIPNMITGATQ--ADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLD 322 (902)
Q Consensus 249 ~~~~i~lIDTPG~~d----f~~~~~~~l~~--aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiD 322 (902)
.++.+.||||.|..- .+.++...+.. ..-+-||++++.- ....++++......++.. +++||+|
T Consensus 280 ~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--------~~dlkei~~~f~~~~i~~--~I~TKlD 349 (407)
T COG1419 280 RDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--------YEDLKEIIKQFSLFPIDG--LIFTKLD 349 (407)
T ss_pred hcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--------hHHHHHHHHHhccCCcce--eEEEccc
Confidence 366899999999764 44445444443 3456678888753 124456666666667665 4689999
Q ss_pred CCC
Q psy15197 323 TVS 325 (902)
Q Consensus 323 l~~ 325 (902)
-..
T Consensus 350 ET~ 352 (407)
T COG1419 350 ETT 352 (407)
T ss_pred ccC
Confidence 653
No 449
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=96.30 E-value=0.031 Score=62.62 Aligned_cols=21 Identities=38% Similarity=0.646 Sum_probs=18.5
Q ss_pred EEEEecCCCChhHHHhHHHHh
Q psy15197 29 LVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 29 v~v~G~~~~GKstL~~~ll~~ 49 (902)
.+|.|--|||||||+|+||..
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 7 TLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 568899999999999999854
No 450
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.29 E-value=0.03 Score=63.87 Aligned_cols=64 Identities=28% Similarity=0.404 Sum_probs=40.6
Q ss_pred CCeEEEEEeCCCccc----hHHHHH--HHHHHcCEEEEEEECCCCccccccCCchhhHH-HHHH-HHHhCCCeEEEEEec
Q psy15197 249 KTKYITLLDAPGHKD----FIPNMI--TGATQADVALLVVDATRGEFETGFESGGQTRE-HALL-VRSLGVNQLGVVINK 320 (902)
Q Consensus 249 ~~~~i~lIDTPG~~d----f~~~~~--~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~-~l~~-l~~~~i~~iIVviNK 320 (902)
..+.+.||||+|-.. ...++. .....+|=+|||+|+..| |... .... -..+++.- |+++|
T Consensus 181 ~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G----------QdA~~~A~aF~e~l~itG--vIlTK 248 (451)
T COG0541 181 EGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG----------QDAVNTAKAFNEALGITG--VILTK 248 (451)
T ss_pred cCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccc----------hHHHHHHHHHhhhcCCce--EEEEc
Confidence 356899999999554 333322 223358999999999987 4432 2222 22345543 68999
Q ss_pred CCCC
Q psy15197 321 LDTV 324 (902)
Q Consensus 321 iDl~ 324 (902)
+|--
T Consensus 249 lDGd 252 (451)
T COG0541 249 LDGD 252 (451)
T ss_pred ccCC
Confidence 9953
No 451
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.24 E-value=0.01 Score=72.86 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=20.2
Q ss_pred eEEEEEecCCCChhHHHhHHHHh
Q psy15197 27 LHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 27 ~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
--|++||+.|+||||++..|...
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~ 208 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAAR 208 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhh
Confidence 35899999999999999999754
No 452
>CHL00189 infB translation initiation factor 2; Provisional
Probab=96.20 E-value=0.027 Score=69.39 Aligned_cols=183 Identities=16% Similarity=0.175 Sum_probs=119.0
Q ss_pred EEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEe-cCCCCCchHHHH
Q psy15197 253 ITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVIN-KLDTVSWSQDRF 331 (902)
Q Consensus 253 i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviN-KiDl~~~~~~~~ 331 (902)
|.=-||-|-.+-+...+..+....+-+=|+.+.-|. -++.-+.++...+ .+|+..| |.+. ..
T Consensus 546 iiKad~~Gs~EAi~~~l~~~~~~~v~i~i~~~~vG~---------it~~Dv~lA~~~~--a~ii~Fnv~~~~------~~ 608 (742)
T CHL00189 546 IIKTDTQGSIEAIINSISQIPQKKVQLNILYASLGE---------VTETDVEFASTTN--AEILAFNTNLAP------GA 608 (742)
T ss_pred EEEeCCcchHHHHHHHHHhcCCCcEEEEEEEeecCC---------CCHHHHHHHHhcC--CEEEEeeCCCCH------HH
Confidence 334588888777777777776667778888887763 3444455565554 2445555 3331 11
Q ss_pred HHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCcccHHHHHHhcCCCCCCCCCCceEEEeeEEee
Q psy15197 332 QEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNFKTPSRPLTKPLRMSVSDIYKS 411 (902)
Q Consensus 332 ~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L~~l~~p~~~~~~pl~~~I~~i~~v 411 (902)
.. ..+..+. .+..-+-.. .-+++ +.+++..+++|.......-++.|..+|..
T Consensus 609 ~~-------~a~~~~v-----~i~~~~iIY-~lid~---------------~~~~~~~~l~~~~~~~~~g~a~v~~vF~~ 660 (742)
T CHL00189 609 KK-------AARKLNI-----IIKEYQVIY-DLLEY---------------IEALMEDLLDPEYKKVPIGEAEVKTVFPL 660 (742)
T ss_pred HH-------HHHHcCC-----EEEEeChHH-HHHHH---------------HHHHHhhccCceeeeeeceeEEeeEEEec
Confidence 11 1222222 333211100 00111 34444555555443334456778889998
Q ss_pred CCCeEEEEEEEEeeEeeCCCEEEEccCCcEE---EEEEEEEceEeeeeeccCCeEEEeeeccccccceeeccccC
Q psy15197 412 TGSGYCIAGRVETGVILAGEKVMVQPQNEVT---TVKAVYVDEMSVSAAYAGDNVSVTLLNYDQQNVSVGFLLSE 483 (902)
Q Consensus 412 ~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~---~V~sI~~~~~~v~~a~aGdiv~I~l~~~~~~~i~kG~vL~~ 483 (902)
+. |.|+..+|.+|+|+.|..+.+...+... +|.++......+.++..|.-|+|.+.++ .+++.|++|..
T Consensus 661 ~k-~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~G~i~slk~~k~~v~ev~~g~ecgi~i~~~--~d~~~gD~ie~ 732 (742)
T CHL00189 661 AK-RFVAGCRVTEGKITKNALIKVIRENKLIYEGKITSLKRVKEDVEEAQEGNECGIFIEEF--QLWQSGDKIHA 732 (742)
T ss_pred CC-CEEEEEEEecCEEecCCeEEEEeCCeEEEEeEEhhHhhcCccccEeCCCCEEEEEeeCC--CCCCcCCEEEE
Confidence 87 9999999999999999999999888753 5677778889999999999999999754 67889998853
No 453
>PRK10867 signal recognition particle protein; Provisional
Probab=96.19 E-value=0.032 Score=64.88 Aligned_cols=64 Identities=30% Similarity=0.440 Sum_probs=37.6
Q ss_pred CeEEEEEeCCCccc----hHHHHHHH--HHHcCEEEEEEECCCCccccccCCchhhHHHHHHHH-HhCCCeEEEEEecCC
Q psy15197 250 TKYITLLDAPGHKD----FIPNMITG--ATQADVALLVVDATRGEFETGFESGGQTREHALLVR-SLGVNQLGVVINKLD 322 (902)
Q Consensus 250 ~~~i~lIDTPG~~d----f~~~~~~~--l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~-~~~i~~iIVviNKiD 322 (902)
++.+.||||||... ...+.... ....+.++||+|+..+ ........... ..++. =+++||+|
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---------q~av~~a~~F~~~~~i~--giIlTKlD 251 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---------QDAVNTAKAFNEALGLT--GVILTKLD 251 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---------HHHHHHHHHHHhhCCCC--EEEEeCcc
Confidence 56799999999543 23222221 1257888999999765 12223332222 33443 36789999
Q ss_pred CC
Q psy15197 323 TV 324 (902)
Q Consensus 323 l~ 324 (902)
-.
T Consensus 252 ~~ 253 (433)
T PRK10867 252 GD 253 (433)
T ss_pred Cc
Confidence 53
No 454
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=96.17 E-value=0.013 Score=48.33 Aligned_cols=53 Identities=25% Similarity=0.320 Sum_probs=29.9
Q ss_pred HHHHHHH-HcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCC
Q psy15197 267 NMITGAT-QADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLD 322 (902)
Q Consensus 267 ~~~~~l~-~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiD 322 (902)
.++.+++ ..+++++++|.++. +|+++..|..-.-.+-....-+|+++|+||+|
T Consensus 5 qai~AL~hL~~~ilfi~D~Se~---CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 5 QAITALAHLADAILFIIDPSEQ---CGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp HHHHGGGGT-SEEEEEE-TT-T---TSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred HHHHHHHhhcceEEEEEcCCCC---CCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 4555555 48899999999976 56666555543333333343456889999998
No 455
>KOG1533|consensus
Probab=96.17 E-value=0.01 Score=62.15 Aligned_cols=70 Identities=17% Similarity=0.264 Sum_probs=39.1
Q ss_pred CeEEEEEeCCCccc------hHHHHHHHHHHcCEEEEEEECCCCccccccCCch-hhHH----HHHHHHHhCCCeEEEEE
Q psy15197 250 TKYITLLDAPGHKD------FIPNMITGATQADVALLVVDATRGEFETGFESGG-QTRE----HALLVRSLGVNQLGVVI 318 (902)
Q Consensus 250 ~~~i~lIDTPG~~d------f~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~-qt~~----~l~~l~~~~i~~iIVvi 318 (902)
...+.++|+||+.+ -.....+.+...|.-+++|.-.+... ...+ ...- .+.-...+..|++ =|+
T Consensus 96 ~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~y----cs~p~~~iS~lL~sl~tMl~melphV-Nvl 170 (290)
T KOG1533|consen 96 TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHY----CSDPSKFISSLLVSLATMLHMELPHV-NVL 170 (290)
T ss_pred cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeecee----eCChHHHHHHHHHHHHHHHhhcccch-hhh
Confidence 34788999999765 56667777777776555544333211 0011 1111 1111222355665 789
Q ss_pred ecCCCC
Q psy15197 319 NKLDTV 324 (902)
Q Consensus 319 NKiDl~ 324 (902)
.|+|+.
T Consensus 171 SK~Dl~ 176 (290)
T KOG1533|consen 171 SKADLL 176 (290)
T ss_pred hHhHHH
Confidence 999964
No 456
>KOG3905|consensus
Probab=96.13 E-value=0.06 Score=58.90 Aligned_cols=52 Identities=27% Similarity=0.340 Sum_probs=36.6
Q ss_pred CCCeEEEEEecCCCCC-------chHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 310 GVNQLGVVINKLDTVS-------WSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 310 ~i~~iIVviNKiDl~~-------~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
|++ ++||++|+|.+. +..+.+.-+...++++.-++|- ..|++|++...||+-
T Consensus 222 Gi~-vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~Ga-----aLiyTSvKE~KNidl 280 (473)
T KOG3905|consen 222 GIP-VLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGA-----ALIYTSVKETKNIDL 280 (473)
T ss_pred CCc-EEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCc-----eeEEeecccccchHH
Confidence 444 679999999742 3334455555666666666664 679999999999886
No 457
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=96.12 E-value=0.029 Score=65.92 Aligned_cols=52 Identities=27% Similarity=0.394 Sum_probs=34.4
Q ss_pred CCCeEEEEEecCCCCC-------chHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 310 GVNQLGVVINKLDTVS-------WSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 310 ~i~~iIVviNKiDl~~-------~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
|+| ++||++|.|... +.++.+.-+...++.++-.+|. .+|++|.+...+++.
T Consensus 196 Gip-i~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGA-----sL~yts~~~~~n~~~ 254 (472)
T PF05783_consen 196 GIP-IVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGA-----SLIYTSVKEEKNLDL 254 (472)
T ss_pred Ccc-eEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCC-----eEEEeeccccccHHH
Confidence 454 779999999742 3334445555555555555554 678899988877765
No 458
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.09 E-value=0.022 Score=65.36 Aligned_cols=66 Identities=21% Similarity=0.222 Sum_probs=41.2
Q ss_pred CCeEEEEEeCCCccc----hHHHHHHHHHHc--C-EEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecC
Q psy15197 249 KTKYITLLDAPGHKD----FIPNMITGATQA--D-VALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKL 321 (902)
Q Consensus 249 ~~~~i~lIDTPG~~d----f~~~~~~~l~~a--D-~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKi 321 (902)
.++.+.||||||... .+.++...+..+ + -.+||+|++.+. ....+.+......+... +++||+
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--------~~~~~~~~~~~~~~~~~--~I~TKl 322 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--------SDVKEIFHQFSPFSYKT--VIFTKL 322 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--------HHHHHHHHHhcCCCCCE--EEEEec
Confidence 467899999999643 233444444432 3 589999999762 12333433333345554 579999
Q ss_pred CCC
Q psy15197 322 DTV 324 (902)
Q Consensus 322 Dl~ 324 (902)
|-.
T Consensus 323 Det 325 (388)
T PRK12723 323 DET 325 (388)
T ss_pred cCC
Confidence 965
No 459
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=96.08 E-value=0.027 Score=51.70 Aligned_cols=65 Identities=18% Similarity=0.201 Sum_probs=55.8
Q ss_pred eEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCcEEEEEEEEE-ceEeeeeeccCCeEEEeee
Q psy15197 402 RMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYV-DEMSVSAAYAGDNVSVTLL 468 (902)
Q Consensus 402 ~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~-~~~~v~~a~aGdiv~I~l~ 468 (902)
+..|.|.-.+++.|.+++..|..|+|++||.+..+.... +|+++.. ....+++|.||+.|.|...
T Consensus 2 ~g~VlE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~~~g--kVr~l~d~~g~~v~~a~Ps~~V~I~G~ 67 (95)
T cd03702 2 EGVVIESKLDKGRGPVATVLVQNGTLKVGDVLVAGTTYG--KVRAMFDENGKRVKEAGPSTPVEILGL 67 (95)
T ss_pred eEEEEEEEecCCCCccEEEEEEcCeEeCCCEEEEccccc--EEEEEECCCCCCCCEECCCCcEEEcCC
Confidence 456888888999999999999999999999999986544 8888885 4578999999999988664
No 460
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.04 E-value=0.0094 Score=65.10 Aligned_cols=66 Identities=18% Similarity=0.255 Sum_probs=42.2
Q ss_pred CeEEEEEeCCCccc----hHHHHHHHHH--HcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCC
Q psy15197 250 TKYITLLDAPGHKD----FIPNMITGAT--QADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDT 323 (902)
Q Consensus 250 ~~~i~lIDTPG~~d----f~~~~~~~l~--~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl 323 (902)
++.+.||||||... .+.++...+. ..|-++||+|++... .+..+.+......++.. ++++|+|-
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--------~d~~~~~~~f~~~~~~~--~I~TKlDe 223 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--------KDMIEIITNFKDIHIDG--IVFTKFDE 223 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--------HHHHHHHHHhCCCCCCE--EEEEeecC
Confidence 56889999999763 3344333332 467889999997541 23344444444556554 57999997
Q ss_pred CC
Q psy15197 324 VS 325 (902)
Q Consensus 324 ~~ 325 (902)
..
T Consensus 224 t~ 225 (270)
T PRK06731 224 TA 225 (270)
T ss_pred CC
Confidence 53
No 461
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.99 E-value=0.012 Score=66.71 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=20.8
Q ss_pred ceEEEEEecCCCChhHHHhHHHHh
Q psy15197 26 RLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 26 ~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
...|+++|+.|+||||++..|...
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~ 229 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQ 229 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999999644
No 462
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.96 E-value=0.025 Score=65.80 Aligned_cols=64 Identities=28% Similarity=0.395 Sum_probs=38.4
Q ss_pred CeEEEEEeCCCccc----hHHHHHH--HHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHH-HhCCCeEEEEEecCC
Q psy15197 250 TKYITLLDAPGHKD----FIPNMIT--GATQADVALLVVDATRGEFETGFESGGQTREHALLVR-SLGVNQLGVVINKLD 322 (902)
Q Consensus 250 ~~~i~lIDTPG~~d----f~~~~~~--~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~-~~~i~~iIVviNKiD 322 (902)
++.+.||||||... ...+... .....|.++||+|++.+ ........... ..++.. +++||+|
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---------q~~~~~a~~f~~~v~i~g--iIlTKlD 250 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---------QDAVNTAKTFNERLGLTG--VVLTKLD 250 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---------HHHHHHHHHHHhhCCCCE--EEEeCcc
Confidence 56799999999543 2222211 12347899999999865 22333333332 345543 5799999
Q ss_pred CC
Q psy15197 323 TV 324 (902)
Q Consensus 323 l~ 324 (902)
-.
T Consensus 251 ~~ 252 (428)
T TIGR00959 251 GD 252 (428)
T ss_pred Cc
Confidence 53
No 463
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=95.79 E-value=0.057 Score=63.03 Aligned_cols=95 Identities=20% Similarity=0.247 Sum_probs=75.3
Q ss_pred HHHhcCCCCCCCCCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCcE---EEEEEEEEceEeeeeeccCCe
Q psy15197 386 VIDNFKTPSRPLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEV---TTVKAVYVDEMSVSAAYAGDN 462 (902)
Q Consensus 386 ~L~~l~~p~~~~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~---~~V~sI~~~~~~v~~a~aGdi 462 (902)
++..++.|.....---...+.+++..++.|.++..+|..|.++.|..+.+...+.. .+|.+++.++.+++++.+|.-
T Consensus 399 ~~~g~l~p~~~e~~~g~~~~r~v~~~~k~g~IaG~~V~~G~ikr~~~v~~~rd~~vi~~G~i~sLk~~kddv~ev~~G~e 478 (509)
T COG0532 399 AMKGMLEPEKKERVIGLAEVRAVFKLPKVGAIAGCMVTEGVIKRGAPVRVVRDGVVIYEGEVESLKRFKDDVKEVRKGQE 478 (509)
T ss_pred HHHhccchhhhhhcccceEEEEEEEcCCCCeEEEEEEecCEEecCCcEEEEeCCeEEEeeEEEeeeccCccHhHhccCcE
Confidence 34444444333222334567789999999999999999999999999999876653 588999999999999999999
Q ss_pred EEEeeeccccccceeecccc
Q psy15197 463 VSVTLLNYDQQNVSVGFLLS 482 (902)
Q Consensus 463 v~I~l~~~~~~~i~kG~vL~ 482 (902)
|+|.+.++ .+++.|++|.
T Consensus 479 cgI~i~~~--~di~~gD~le 496 (509)
T COG0532 479 CGIAIENY--RDIKEGDILE 496 (509)
T ss_pred EEEEecCc--ccCCCCCEEE
Confidence 99999863 6788888775
No 464
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=95.40 E-value=0.086 Score=53.59 Aligned_cols=66 Identities=33% Similarity=0.447 Sum_probs=48.9
Q ss_pred CCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCC
Q psy15197 249 KTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTV 324 (902)
Q Consensus 249 ~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~ 324 (902)
..+.+.|||||+... ..+...+..+|.+|+|+..+.... ......+..++..+.+ +.+|+||+|..
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~~~-------~~~~~~~~~l~~~~~~-~~vV~N~~~~~ 156 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPSGL-------HDLERAVELVRHFGIP-VGVVINKYDLN 156 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcccH-------HHHHHHHHHHHHcCCC-EEEEEeCCCCC
Confidence 467899999996533 355677889999999999875422 2455666777777766 55899999964
No 465
>KOG2484|consensus
Probab=95.31 E-value=0.057 Score=60.77 Aligned_cols=79 Identities=29% Similarity=0.343 Sum_probs=52.8
Q ss_pred EEeCCCccc-hHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHH-HHhCCCeEEEEEecCCCCCchHHHHH
Q psy15197 255 LLDAPGHKD-FIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLV-RSLGVNQLGVVINKLDTVSWSQDRFQ 332 (902)
Q Consensus 255 lIDTPG~~d-f~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l-~~~~i~~iIVviNKiDl~~~~~~~~~ 332 (902)
-.|-+++.+ |.++....+..+|++|-|+||.++.- ....+.-..+ ...|-+.+|+|+||+|++. .
T Consensus 126 ~~~~~~s~kaY~ke~rkvve~sDVVleVlDARDPlg-------tR~~~vE~~V~~~~gnKkLILVLNK~DLVP------r 192 (435)
T KOG2484|consen 126 ALDNEESKKAYDKEFRKVVEASDVVLEVLDARDPLG-------TRCPEVEEAVLQAHGNKKLILVLNKIDLVP------R 192 (435)
T ss_pred hccchhhHHHHHHHHHHHHhhhheEEEeeeccCCCC-------CCChhHHHHHHhccCCceEEEEeehhccCC------H
Confidence 445555554 88888889999999999999998732 1222222222 3445477889999999996 3
Q ss_pred HHHHHHHHhhhhcC
Q psy15197 333 EIVTKLGAFLKQAG 346 (902)
Q Consensus 333 ~i~~~l~~~l~~~~ 346 (902)
+..++-..+|+..+
T Consensus 193 Ev~e~Wl~YLr~~~ 206 (435)
T KOG2484|consen 193 EVVEKWLVYLRREG 206 (435)
T ss_pred HHHHHHHHHHHhhC
Confidence 44555555666543
No 466
>KOG1424|consensus
Probab=95.21 E-value=0.0085 Score=69.07 Aligned_cols=41 Identities=17% Similarity=0.096 Sum_probs=30.9
Q ss_pred cCCCcceEEEEEecCCCChhHHHhHHHHhccccchhhhccc
Q psy15197 21 AGGKGRLHLVVIGHVDAGKSTLMGHLLYLMGRVSAREIHKH 61 (902)
Q Consensus 21 ~~~~~~~~v~v~G~~~~GKstL~~~ll~~~~~~~~~~~~~~ 61 (902)
...+..+.|++||-||+||||++|+|.+...+--.++.||+
T Consensus 309 ~~~~~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkT 349 (562)
T KOG1424|consen 309 ERYKDVVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKT 349 (562)
T ss_pred cCCCceeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCc
Confidence 34455789999999999999999999977544334445554
No 467
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=94.96 E-value=0.094 Score=59.52 Aligned_cols=25 Identities=40% Similarity=0.388 Sum_probs=21.2
Q ss_pred cceEEEEEecCCCChhHHHhHHHHh
Q psy15197 25 GRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 25 ~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
..-.|+|||.+|||||||..-|+.+
T Consensus 72 ~~~~vmvvG~vDSGKSTLt~~LaN~ 96 (398)
T COG1341 72 KVGVVMVVGPVDSGKSTLTTYLANK 96 (398)
T ss_pred CCcEEEEECCcCcCHHHHHHHHHHH
Confidence 3457999999999999999888655
No 468
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=94.91 E-value=0.14 Score=47.04 Aligned_cols=65 Identities=14% Similarity=0.152 Sum_probs=54.1
Q ss_pred eEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCcEEEEEEEEE-ceEeeeeeccCCeEEEeee
Q psy15197 402 RMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYV-DEMSVSAAYAGDNVSVTLL 468 (902)
Q Consensus 402 ~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~-~~~~v~~a~aGdiv~I~l~ 468 (902)
+..|.|.-.+++.|.+++..|..|+|++||.+..+... .+|+++.- ....+.+|.|++.+.+.+.
T Consensus 2 ~g~ViE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~~~--GkVr~~~d~~g~~v~~a~Ps~~v~i~g~ 67 (95)
T cd03701 2 EGTVIESKLDKGRGPVATVIVQNGTLKKGDVIVAGGTY--GKIRTMVDENGKALLEAGPSTPVEILGL 67 (95)
T ss_pred eEEEEEEEecCCCCeeEEEEEEcCeEecCCEEEECCcc--ceEEEEECCCCCCccccCCCCCEEEeee
Confidence 45678888899999999999999999999999998644 36777764 4568899999999877775
No 469
>KOG3887|consensus
Probab=94.87 E-value=0.077 Score=55.91 Aligned_cols=103 Identities=23% Similarity=0.301 Sum_probs=62.3
Q ss_pred EEEEEeCCCccchHHH---HHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCC---eEEEEEecCCCCC
Q psy15197 252 YITLLDAPGHKDFIPN---MITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVN---QLGVVINKLDTVS 325 (902)
Q Consensus 252 ~i~lIDTPG~~df~~~---~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~---~iIVviNKiDl~~ 325 (902)
.+.+||-||+.+|... ...-.+.+.+.|+|||+.+.-+| .-+..++...+..++. .+=|++-|.|-..
T Consensus 76 nf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQddy~e------ala~L~~~v~raykvNp~in~EVfiHKvDGLs 149 (347)
T KOG3887|consen 76 NFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDDYME------ALARLHMTVERAYKVNPNINFEVFIHKVDGLS 149 (347)
T ss_pred ceEEeecCCccccCCCccCHHHHHhccCeEEEEEechHHHHH------HHHHHHHHhhheeecCCCceEEEEEEeccCCc
Confidence 5778999999885544 23445788999999999876433 3445555555554432 2557899999654
Q ss_pred ch--HHHHHHHHHHHHHhhhhcCCCCCCceEecCCCc
Q psy15197 326 WS--QDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGL 360 (902)
Q Consensus 326 ~~--~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~ 360 (902)
.+ .+....+......-+...|...-.+.+..+|-.
T Consensus 150 dd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSIy 186 (347)
T KOG3887|consen 150 DDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSIY 186 (347)
T ss_pred hhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeeec
Confidence 21 122334444455555556654434455555543
No 470
>PF00199 Catalase: Catalase; InterPro: IPR011614 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen, serving to protect cells from its toxic effects []. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. Most catalases are mono-functional, haem-containing enzymes, although there are also bifunctional haem-containing peroxidase/catalases (IPR000763 from INTERPRO) that are closely related to plant peroxidases, and non-haem, manganese-containing catalases (IPR007760 from INTERPRO) that are found in bacteria []. Based on a phylogenetic analysis, catalases can be classified into clade 1, 2 and 3. Clade 1 contains small subunit catalases from plants and a subset of bacteria; clade 2 contains large subunit catalases from fungi and a second subset of bacteria; and clade 3 contains small subunit catalases from bacteria, fungi, protists, animals, and plants [, ]. This entry represent the core-forming domain of mono-functional, haem-containing catalases. It does not cover the region that carries an immune-responsive amphipathic octa-peptide that is found in the C-terminal of some catalases (IPR010582 from INTERPRO).; GO: 0004096 catalase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 7CAT_A 3NWL_D 4BLC_D 1TH3_D 1TH4_A 1TGU_B 1TH2_D 3RGS_D 3RE8_D 3RGP_C ....
Probab=94.87 E-value=0.0072 Score=69.45 Aligned_cols=94 Identities=43% Similarity=0.599 Sum_probs=66.2
Q ss_pred cCCCCCCCCccccccccCCCCCCCCcchhhhhccccccCCCCccchhcccCCCCccccccchhhhccCCCCCCCCCcccc
Q psy15197 94 TTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFEDRETIIKTIGPHGPVPLEDTY 173 (902)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (902)
||.+|.|+...+...+.++.||+++.|..++++|.+|+++.+++|.+|+|+.++.|.|.....+-. +
T Consensus 1 t~~~g~~~~~~~~~~~~g~~gp~~~~~~~lvd~l~~~~~~~~~~R~~HAKG~~a~G~F~v~~~~~~-------------~ 67 (384)
T PF00199_consen 1 TTSNGAPVANPENSQTVGSRGPLLLQDEQLVDKLEHFDGERPGERAVHAKGHGAKGEFEVTPDLPE-------------L 67 (384)
T ss_dssp B-TTSSBBSSSSSEEEESTTSEBBTTHHHHHHHHHHHTT--TCS-SSS-SEEEEEEEEEESSCGTT-------------T
T ss_pred CCCCCcccCCCccceecCCCCCceeccHHHHHHhhccccccCccccccccceEEEEEEEECCcchH-------------h
Confidence 577899999999999999999999999999999999999999999999999999999997555411 1
Q ss_pred cccccccccCCCCcccccccCCCCccc
Q psy15197 174 YLDKLFHFSGERNPERVVHAKGGGAFG 200 (902)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (902)
.-.-+|...|+.-|-.++.+-..|.++
T Consensus 68 ~~a~~F~~~Gk~~pv~vRFS~~~g~~~ 94 (384)
T PF00199_consen 68 TRAGLFAKPGKTYPVIVRFSNAGGNPG 94 (384)
T ss_dssp ---GGGSSTT-EEEEEEEEEESSS-TT
T ss_pred hhcccccCCCcccceeeeecccCCCCC
Confidence 222333333445666666664444443
No 471
>cd08157 catalase_fungal Fungal catalases similar to yeast catalases A and T. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes, which is involved in the protection of cells from the toxic effects of peroxides. It catalyzes the conversion of hydrogen peroxide to water and molecular oxygen. Catalases also utilize hydrogen peroxide to oxidize various substrates such as alcohol or phenols. This family of fungal catalases has a relatively small subunit size, and binds a protoheme IX (heme b) group buried deep inside the structure. Fungal catalases also bind NADPH as a second redox-active cofactor. They form tetramers; in eukaryotic cells, catalases are typically located in peroxisomes. Saccharomyces cerevisiae catalase T is found in the cytoplasm, though.
Probab=94.83 E-value=0.013 Score=68.21 Aligned_cols=73 Identities=40% Similarity=0.581 Sum_probs=58.1
Q ss_pred CcchhhhhccccccCCCCccchhcccCCCCccccccchhhhccCCCCCCCCCcccccccccccccCCCCcccccccCCCC
Q psy15197 118 LEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFEDRETIIKTIGPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGG 197 (902)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (902)
++|...+++|-||++|.||+|++|+++.|+.|+|..+..+- .|.-..+|...|+..|-.++.+-+.|
T Consensus 1 l~d~~l~e~l~~f~reripeR~vHAKG~ga~G~F~vt~d~s-------------~~t~a~~f~~~gk~~pv~vRFSt~~g 67 (451)
T cd08157 1 LQDFHLIDTLAHFDRERIPERVVHAKGAGAYGEFEVTDDIS-------------DITSADMLQGVGKKTPCLVRFSTVGG 67 (451)
T ss_pred CchHHHHHHHHhhccCCCccccccCCcccEEEEEEECCChh-------------HHHhhhhccCCCceeeEEEecccCCC
Confidence 57999999999999999999999999999999999766542 24445556555678888888887777
Q ss_pred ccccce
Q psy15197 198 AFGYFE 203 (902)
Q Consensus 198 ~~~~~~ 203 (902)
..+..+
T Consensus 68 ~~~~~D 73 (451)
T cd08157 68 EKGSAD 73 (451)
T ss_pred CCCCCC
Confidence 776443
No 472
>KOG2484|consensus
Probab=94.82 E-value=0.026 Score=63.35 Aligned_cols=27 Identities=26% Similarity=0.338 Sum_probs=24.1
Q ss_pred CCcceEEEEEecCCCChhHHHhHHHHh
Q psy15197 23 GKGRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 23 ~~~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
-+..|.|+|||-||+||||++|+|+..
T Consensus 249 lk~sIrvGViG~PNVGKSSvINsL~~~ 275 (435)
T KOG2484|consen 249 LKTSIRVGIIGYPNVGKSSVINSLKRR 275 (435)
T ss_pred cCcceEeeeecCCCCChhHHHHHHHHh
Confidence 366789999999999999999999855
No 473
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=94.46 E-value=0.29 Score=55.95 Aligned_cols=27 Identities=33% Similarity=0.550 Sum_probs=23.5
Q ss_pred CCcceEEEEEecCCCChhHHHhHHHHh
Q psy15197 23 GKGRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 23 ~~~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
..+.|=|+|||+|=+||||+++++...
T Consensus 14 T~GdIYiGVVGPVRTGKSTFIKRFMel 40 (492)
T PF09547_consen 14 TGGDIYIGVVGPVRTGKSTFIKRFMEL 40 (492)
T ss_pred cCCceEEEeecCcccCchhHHHHHHHH
Confidence 346799999999999999999999644
No 474
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=94.33 E-value=0.25 Score=46.46 Aligned_cols=66 Identities=23% Similarity=0.306 Sum_probs=51.2
Q ss_pred eEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCc--EEEEEEEEEce-----------EeeeeeccCCeEEEee
Q psy15197 402 RMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNE--VTTVKAVYVDE-----------MSVSAAYAGDNVSVTL 467 (902)
Q Consensus 402 ~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~--~~~V~sI~~~~-----------~~v~~a~aGdiv~I~l 467 (902)
+..|.++-.++|.|.++...|+.|+|+.||.|.++.... ..+|+++...+ ..++++.|..-+-|..
T Consensus 2 ~gtVlEvk~~~G~G~t~dvIl~~GtL~~GD~Iv~g~~~Gpi~tkVRaLl~~~~~~E~r~~~~~~~vk~v~aa~gvkI~~ 80 (110)
T cd03703 2 QGTVLEVKEEEGLGTTIDVILYDGTLREGDTIVVCGLNGPIVTKVRALLKPQPLKELRVKSRFIHVKEVKAAAGVKILA 80 (110)
T ss_pred cEEEEEEEEcCCCceEEEEEEECCeEecCCEEEEccCCCCceEEEeEecCCCCchhhccccccceeeEEecCCCcEEEe
Confidence 356788888999999999999999999999999987764 46888877533 2677777555455544
No 475
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=94.32 E-value=0.039 Score=46.44 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=19.4
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
...|.|+.+||||||++++..-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999644
No 476
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=94.31 E-value=0.092 Score=53.55 Aligned_cols=42 Identities=29% Similarity=0.215 Sum_probs=28.7
Q ss_pred CEEEEEEECCCCccccccCCchhhHHHHHH--HHHhCCCeEEEEEecCCCCC
Q psy15197 276 DVALLVVDATRGEFETGFESGGQTREHALL--VRSLGVNQLGVVINKLDTVS 325 (902)
Q Consensus 276 D~aIlVVDa~~g~~E~~~~~~~qt~~~l~~--l~~~~i~~iIVviNKiDl~~ 325 (902)
|++++|+|+..+.. ....++... +...+ +++|+|+||+|+++
T Consensus 1 DvVl~VvDar~p~~-------~~~~~i~~~~~l~~~~-kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLG-------CRCPQVEEAVLQAGGN-KKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCC-------CCCHHHHHHHHhccCC-CCEEEEEehhhcCC
Confidence 78999999987632 234444444 22334 45779999999975
No 477
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.20 E-value=0.061 Score=55.36 Aligned_cols=24 Identities=33% Similarity=0.613 Sum_probs=21.4
Q ss_pred ceEEEEEecCCCChhHHHhHHHHh
Q psy15197 26 RLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 26 ~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.-+++|+|.+|||||||+++|+..
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 458999999999999999999854
No 478
>KOG3859|consensus
Probab=94.16 E-value=0.26 Score=52.96 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=21.2
Q ss_pred ceEEEEEecCCCChhHHHhHHHH
Q psy15197 26 RLHLVVIGHVDAGKSTLMGHLLY 48 (902)
Q Consensus 26 ~~~v~v~G~~~~GKstL~~~ll~ 48 (902)
.+||.-||.+|-|||||++.|..
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFN 64 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFN 64 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhc
Confidence 57999999999999999999973
No 479
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.16 E-value=0.042 Score=51.83 Aligned_cols=22 Identities=32% Similarity=0.382 Sum_probs=19.9
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.|+|+|.+|||||||++.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999765
No 480
>KOG4181|consensus
Probab=94.08 E-value=0.55 Score=52.03 Aligned_cols=23 Identities=35% Similarity=0.359 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChhHHHhHHHHh
Q psy15197 27 LHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 27 ~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.-|+++|.-|+|||||++.|...
T Consensus 189 ~VIgvlG~QgsGKStllslLaan 211 (491)
T KOG4181|consen 189 TVIGVLGGQGSGKSTLLSLLAAN 211 (491)
T ss_pred eEEEeecCCCccHHHHHHHHhcc
Confidence 35889999999999999988644
No 481
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.00 E-value=0.19 Score=55.83 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=20.9
Q ss_pred ceEEEEEecCCCChhHHHhHHHHh
Q psy15197 26 RLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 26 ~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
..-|.+||-.|+||||-+..|.+.
T Consensus 139 p~Vil~vGVNG~GKTTTIaKLA~~ 162 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAKLAKY 162 (340)
T ss_pred cEEEEEEecCCCchHhHHHHHHHH
Confidence 566899999999999999999655
No 482
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=93.78 E-value=0.36 Score=44.28 Aligned_cols=35 Identities=17% Similarity=0.188 Sum_probs=27.6
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCC
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRG 287 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g 287 (902)
+.+.+||||+...- .....+..+|.+|++++++..
T Consensus 40 ~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~~~~~ 74 (104)
T cd02042 40 YDYIIIDTPPSLGL--LTRNALAAADLVLIPVQPSPL 74 (104)
T ss_pred CCEEEEeCcCCCCH--HHHHHHHHCCEEEEeccCCHH
Confidence 56899999997543 344788899999999988754
No 483
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=93.71 E-value=0.058 Score=60.81 Aligned_cols=35 Identities=20% Similarity=0.381 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCCcceEEEEEecCCCChhHHHhHHHHh
Q psy15197 13 IEEYTREQAGGKGRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 13 ~~~~~~~~~~~~~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
+.+++.... +...||+|+|.+|||||||+++|+..
T Consensus 149 ~~~~L~~~v--~~~~nili~G~tgSGKTTll~aL~~~ 183 (332)
T PRK13900 149 IKEFLEHAV--ISKKNIIISGGTSTGKTTFTNAALRE 183 (332)
T ss_pred HHHHHHHHH--HcCCcEEEECCCCCCHHHHHHHHHhh
Confidence 345555444 45689999999999999999999855
No 484
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=93.33 E-value=0.71 Score=40.76 Aligned_cols=36 Identities=17% Similarity=0.213 Sum_probs=26.8
Q ss_pred EEEEEeCCCccchHHH-HHHHHHHcCEEEEEEECCCC
Q psy15197 252 YITLLDAPGHKDFIPN-MITGATQADVALLVVDATRG 287 (902)
Q Consensus 252 ~i~lIDTPG~~df~~~-~~~~l~~aD~aIlVVDa~~g 287 (902)
.+.++|+||....... ....+..+|.++++++....
T Consensus 35 d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~ 71 (99)
T cd01983 35 DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEAL 71 (99)
T ss_pred CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCchh
Confidence 6889999987653321 25667789999999998765
No 485
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=93.29 E-value=0.064 Score=54.95 Aligned_cols=24 Identities=42% Similarity=0.558 Sum_probs=20.7
Q ss_pred ceEEEEEecCCCChhHHHhHHHHh
Q psy15197 26 RLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 26 ~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.-.++|+|+.|+|||||++.++..
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~ 44 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYA 44 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhc
Confidence 346999999999999999998754
No 486
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=93.27 E-value=0.069 Score=51.81 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=19.6
Q ss_pred EEEEecCCCChhHHHhHHHHhc
Q psy15197 29 LVVIGHVDAGKSTLMGHLLYLM 50 (902)
Q Consensus 29 v~v~G~~~~GKstL~~~ll~~~ 50 (902)
|.++|.+|||||||+..|....
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHC
Confidence 6899999999999999998553
No 487
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.22 E-value=0.055 Score=57.38 Aligned_cols=19 Identities=37% Similarity=0.583 Sum_probs=17.9
Q ss_pred EEEEecCCCChhHHHhHHH
Q psy15197 29 LVVIGHVDAGKSTLMGHLL 47 (902)
Q Consensus 29 v~v~G~~~~GKstL~~~ll 47 (902)
|+|+|+.|||||||+|.|-
T Consensus 34 vaI~GpSGSGKSTLLniig 52 (226)
T COG1136 34 VAIVGPSGSGKSTLLNLLG 52 (226)
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 8999999999999999883
No 488
>COG1161 Predicted GTPases [General function prediction only]
Probab=93.20 E-value=0.2 Score=56.34 Aligned_cols=94 Identities=20% Similarity=0.166 Sum_probs=59.2
Q ss_pred EEEeCCCccc-hHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHHHHH
Q psy15197 254 TLLDAPGHKD-FIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQ 332 (902)
Q Consensus 254 ~lIDTPG~~d-f~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~~~ 332 (902)
.+-+-|||.. +.+.....+..+|+++-|+|+.+... .....+..+... ++.++|+||+|+++. ..
T Consensus 13 ~i~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~-------s~~~~l~~~v~~---k~~i~vlNK~DL~~~--~~-- 78 (322)
T COG1161 13 KIQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLG-------TRNPELERIVKE---KPKLLVLNKADLAPK--EV-- 78 (322)
T ss_pred cccCCCCchHHHHHHHHHhcccCCEEEEEEecccccc-------ccCccHHHHHcc---CCcEEEEehhhcCCH--HH--
Confidence 3455699875 77778888889999999999998732 222333233322 223699999999862 22
Q ss_pred HHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 333 EIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 333 ~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.++...++.... ....+.+|+.++.+...
T Consensus 79 --~~~W~~~~~~~~----~~~~~~v~~~~~~~~~~ 107 (322)
T COG1161 79 --TKKWKKYFKKEE----GIKPIFVSAKSRQGGKK 107 (322)
T ss_pred --HHHHHHHHHhcC----CCccEEEEeecccCccc
Confidence 222233333221 12567888888887776
No 489
>KOG0446|consensus
Probab=93.18 E-value=0.042 Score=67.03 Aligned_cols=67 Identities=19% Similarity=0.242 Sum_probs=46.2
Q ss_pred eEEEEEeCCCccc-------------hHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhC--CCeEE
Q psy15197 251 KYITLLDAPGHKD-------------FIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLG--VNQLG 315 (902)
Q Consensus 251 ~~i~lIDTPG~~d-------------f~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~--i~~iI 315 (902)
-.+++||+||..+ .......++....++|+.|....-. -.+.+.+.++++.. ....|
T Consensus 132 ~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~d--------~ats~alkiarevDp~g~RTi 203 (657)
T KOG0446|consen 132 ANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANSD--------IATSPALVVAREVDPGGSRTL 203 (657)
T ss_pred chhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchhhh--------hhcCHHHHHHHhhCCCccchh
Confidence 4799999999865 4555666777888888887765421 23455566666652 23466
Q ss_pred EEEecCCCCC
Q psy15197 316 VVINKLDTVS 325 (902)
Q Consensus 316 VviNKiDl~~ 325 (902)
.|++|.|+.+
T Consensus 204 gvitK~Dlmd 213 (657)
T KOG0446|consen 204 EVITKFDFMD 213 (657)
T ss_pred HHhhhHHhhh
Confidence 8999999875
No 490
>KOG1424|consensus
Probab=93.14 E-value=0.29 Score=56.93 Aligned_cols=80 Identities=18% Similarity=0.205 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh-CCCeEEEEEecCCCCCchHHHHHHHHHHHHHhh
Q psy15197 264 FIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL-GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFL 342 (902)
Q Consensus 264 f~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~-~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l 342 (902)
+.....+.+..+|++|.||||..+.+- ...... .+.+.. .-+..++++||.||.. .+....-..++
T Consensus 164 ~WRQLWRVlErSDivvqIVDARnPllf----r~~dLe---~Yvke~d~~K~~~LLvNKaDLl~------~~qr~aWa~YF 230 (562)
T KOG1424|consen 164 IWRQLWRVLERSDIVVQIVDARNPLLF----RSPDLE---DYVKEVDPSKANVLLVNKADLLP------PEQRVAWAEYF 230 (562)
T ss_pred HHHHHHHHHhhcceEEEEeecCCcccc----CChhHH---HHHhccccccceEEEEehhhcCC------HHHHHHHHHHH
Confidence 667788888999999999999988552 112222 233332 2245679999999986 12222233344
Q ss_pred hhcCCCCCCceEecCCCcc
Q psy15197 343 KQAGFRDSDIEYVPCSGLT 361 (902)
Q Consensus 343 ~~~~~~~~~~~ii~iSA~~ 361 (902)
.. .++++++-||+.
T Consensus 231 ~~-----~ni~~vf~SA~~ 244 (562)
T KOG1424|consen 231 RQ-----NNIPVVFFSALA 244 (562)
T ss_pred Hh-----cCceEEEEeccc
Confidence 33 346899999986
No 491
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.13 E-value=0.083 Score=55.30 Aligned_cols=27 Identities=15% Similarity=0.166 Sum_probs=23.4
Q ss_pred CCcceEEEEEecCCCChhHHHhHHHHh
Q psy15197 23 GKGRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 23 ~~~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.+...-|+|+|++|||||||+++|...
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 455678999999999999999999755
No 492
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=93.07 E-value=0.071 Score=45.69 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=19.0
Q ss_pred EEEEecCCCChhHHHhHHHHh
Q psy15197 29 LVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 29 v~v~G~~~~GKstL~~~ll~~ 49 (902)
|+++|.+++||||+++.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999744
No 493
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=93.06 E-value=0.088 Score=53.21 Aligned_cols=41 Identities=20% Similarity=0.399 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHhcCCCcceEEEEEecCCCChhHHHhHHHHh
Q psy15197 8 DKLKKIEEYTREQAGGKGRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
+.++++...+. ........++.|.|.+|+|||||+++++..
T Consensus 7 ~e~~~l~~~l~-~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 7 EEIERLRDLLD-AAQSGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp HHHHHHHHTTG-GTSS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45566666665 344555678999999999999999999765
No 494
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.03 E-value=0.062 Score=56.19 Aligned_cols=21 Identities=43% Similarity=0.509 Sum_probs=19.0
Q ss_pred EEEEEecCCCChhHHHhHHHH
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLY 48 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~ 48 (902)
.|+|||+.|||||||+.||-.
T Consensus 30 vv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 489999999999999999953
No 495
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=92.98 E-value=0.077 Score=54.45 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=21.1
Q ss_pred eEEEEEecCCCChhHHHhHHHHhc
Q psy15197 27 LHLVVIGHVDAGKSTLMGHLLYLM 50 (902)
Q Consensus 27 ~~v~v~G~~~~GKstL~~~ll~~~ 50 (902)
.+|+|+|+|||||||++..|....
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999997653
No 496
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=92.95 E-value=0.095 Score=59.34 Aligned_cols=34 Identities=26% Similarity=0.476 Sum_probs=26.7
Q ss_pred HHHHHHhcCCCcceEEEEEecCCCChhHHHhHHHHh
Q psy15197 14 EEYTREQAGGKGRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 14 ~~~~~~~~~~~~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.++++... +...||.|+|.+|||||||+++|+..
T Consensus 152 ~~~l~~~v--~~~~nilI~G~tGSGKTTll~aLl~~ 185 (344)
T PRK13851 152 EAFLHACV--VGRLTMLLCGPTGSGKTTMSKTLISA 185 (344)
T ss_pred HHHHHHHH--HcCCeEEEECCCCccHHHHHHHHHcc
Confidence 34444433 56789999999999999999999854
No 497
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=92.95 E-value=0.072 Score=51.42 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=20.2
Q ss_pred eEEEEEecCCCChhHHHhHHHHh
Q psy15197 27 LHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 27 ~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
-.++|+|+.|+|||||++.|...
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEEccCCCccccceeeeccc
Confidence 36899999999999999999754
No 498
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=92.92 E-value=0.1 Score=58.45 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=22.2
Q ss_pred cceEEEEEecCCCChhHHHhHHHHh
Q psy15197 25 GRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 25 ~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
...||+|+|.+|||||||+++|+..
T Consensus 143 ~~~nilI~G~tGSGKTTll~aL~~~ 167 (323)
T PRK13833 143 SRLNIVISGGTGSGKTTLANAVIAE 167 (323)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999865
No 499
>PRK08118 topology modulation protein; Reviewed
Probab=92.91 E-value=0.082 Score=53.61 Aligned_cols=22 Identities=36% Similarity=0.447 Sum_probs=20.1
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
+|.|+|.+|||||||...|...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999755
No 500
>PRK05480 uridine/cytidine kinase; Provisional
Probab=92.86 E-value=0.098 Score=54.70 Aligned_cols=27 Identities=19% Similarity=0.222 Sum_probs=23.6
Q ss_pred CCcceEEEEEecCCCChhHHHhHHHHh
Q psy15197 23 GKGRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 23 ~~~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.+....|+|+|.+|||||||++.|...
T Consensus 3 ~~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 3 MKKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 356789999999999999999999755
Done!