Query psy15197
Match_columns 902
No_of_seqs 560 out of 4678
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 23:09:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15197.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15197hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ttv_A Catalase HPII; heme ori 100.0 4E-120 1E-124 1066.1 32.0 424 477-902 100-542 (753)
2 2isa_A Catalase; peroxidase, h 100.0 1E-119 5E-124 1026.5 31.9 424 477-902 25-454 (483)
3 1m7s_A Catalase; beta barrel, 100.0 1E-119 5E-124 1024.8 31.8 421 477-902 24-448 (484)
4 1dgf_A Catalase; heme, NADPH, 100.0 2E-119 6E-124 1027.1 31.6 425 477-902 43-473 (497)
5 1si8_A Catalase; N-terminal AR 100.0 2E-119 6E-124 1024.1 29.1 423 477-902 26-454 (484)
6 1gwe_A Catalase; oxidoreductas 100.0 4E-119 1E-123 1023.6 32.0 424 477-902 33-464 (503)
7 2j2m_A Catalase; functional cl 100.0 5E-119 2E-123 1021.9 32.2 424 477-902 28-458 (491)
8 3ej6_A Catalase-3; heme, hydro 100.0 6E-119 2E-123 1052.0 32.7 425 476-902 42-485 (688)
9 1qwl_A KATA catalase; beta bar 100.0 8E-119 3E-123 1021.4 31.5 424 477-902 28-463 (505)
10 1a4e_A Catalase A; oxidoreduct 100.0 2E-118 6E-123 1016.8 29.2 424 477-902 28-467 (488)
11 2xq1_A Peroxisomal catalase; o 100.0 1E-117 5E-122 1012.2 30.0 423 477-902 39-476 (509)
12 2iuf_A Catalase; oxidoreductas 100.0 8E-117 3E-121 1037.7 32.1 424 477-902 35-477 (688)
13 1sy7_A Catalase 1; heme oxidat 100.0 1E-111 4E-116 1007.9 31.3 422 477-902 43-480 (715)
14 3e4w_A Putative uncharacterize 100.0 4.2E-86 1.4E-90 721.6 22.5 280 499-796 32-313 (320)
15 1u5u_A Allene oxide synthase-l 100.0 2.4E-74 8.1E-79 640.4 17.3 277 499-802 63-371 (374)
16 3dy5_A Allene oxide synthase-l 100.0 6.5E-67 2.2E-71 645.0 15.3 298 500-819 65-390 (1066)
17 3j2k_7 ERF3, eukaryotic polype 100.0 2.3E-51 8E-56 473.5 34.8 345 22-518 13-361 (439)
18 3p26_A Elongation factor 1 alp 100.0 5.7E-48 2E-52 450.7 30.6 350 23-519 30-398 (483)
19 3mca_A HBS1, elongation factor 100.0 1.9E-48 6.7E-53 463.7 22.4 348 23-519 174-524 (592)
20 1f60_A Elongation factor EEF1A 100.0 8.4E-48 2.9E-52 446.1 26.2 346 23-518 4-363 (458)
21 3izq_1 HBS1P, elongation facto 100.0 1.3E-47 4.3E-52 457.9 24.3 351 22-519 163-532 (611)
22 1r5b_A Eukaryotic peptide chai 100.0 2.5E-47 8.7E-52 443.1 25.8 342 23-515 40-387 (467)
23 1jny_A EF-1-alpha, elongation 100.0 5.9E-47 2E-51 436.6 25.4 346 23-518 3-351 (435)
24 1zun_B Sulfate adenylate trans 100.0 2.5E-43 8.5E-48 406.3 30.0 275 231-518 84-359 (434)
25 1d2e_A Elongation factor TU (E 100.0 2.1E-40 7.1E-45 377.7 30.7 269 232-516 47-326 (397)
26 2c78_A Elongation factor TU-A; 100.0 1.4E-39 4.9E-44 371.7 27.1 275 232-515 56-343 (405)
27 3avx_A Elongation factor TS, e 100.0 1.2E-37 4E-42 383.0 30.7 264 232-512 340-612 (1289)
28 1kk1_A EIF2gamma; initiation o 100.0 2E-36 6.7E-41 346.4 29.5 250 251-525 83-366 (410)
29 2elf_A Protein translation elo 100.0 5.7E-37 2E-41 345.7 22.4 251 235-516 44-306 (370)
30 1s0u_A EIF-2-gamma, translatio 100.0 1.5E-36 5.1E-41 347.1 24.6 250 251-525 81-364 (408)
31 3sjy_A Translation initiation 100.0 1.6E-35 5.5E-40 338.0 27.5 264 250-540 74-371 (403)
32 1wb1_A Translation elongation 100.0 1.1E-36 3.7E-41 354.9 15.4 259 232-518 54-319 (482)
33 3vqt_A RF-3, peptide chain rel 100.0 9.7E-36 3.3E-40 351.3 22.3 238 218-487 72-402 (548)
34 4fn5_A EF-G 1, elongation fact 100.0 3E-33 1E-37 340.4 21.7 239 218-488 50-407 (709)
35 2ywe_A GTP-binding protein LEP 100.0 1.3E-31 4.5E-36 317.3 26.8 224 233-487 50-282 (600)
36 3j25_A Tetracycline resistance 100.0 1.7E-34 5.8E-39 347.0 -0.0 235 218-486 39-331 (638)
37 3cb4_D GTP-binding protein LEP 100.0 5E-31 1.7E-35 312.9 28.5 224 233-487 48-280 (599)
38 3tr5_A RF-3, peptide chain rel 100.0 4.2E-31 1.4E-35 310.2 19.5 225 233-484 64-381 (528)
39 2rdo_7 EF-G, elongation factor 100.0 9.8E-30 3.4E-34 308.4 30.0 225 233-487 57-403 (704)
40 1dar_A EF-G, elongation factor 100.0 4.4E-29 1.5E-33 302.3 30.7 225 233-487 59-395 (691)
41 2h5e_A Peptide chain release f 100.0 9.1E-30 3.1E-34 299.2 23.3 227 233-486 64-384 (529)
42 2xex_A Elongation factor G; GT 100.0 9.8E-29 3.4E-33 299.4 27.3 224 233-486 57-394 (693)
43 2dy1_A Elongation factor G; tr 100.0 8.3E-28 2.9E-32 290.2 24.7 225 233-487 56-368 (665)
44 3izy_P Translation initiation 99.9 2.3E-28 7.7E-33 286.2 2.3 207 250-487 51-261 (537)
45 1n0u_A EF-2, elongation factor 99.9 9.1E-26 3.1E-30 278.7 22.5 241 233-486 64-474 (842)
46 1zo1_I IF2, translation initia 99.9 6.3E-28 2.2E-32 280.2 3.0 216 235-485 35-258 (501)
47 1g7s_A Translation initiation 99.9 2.1E-26 7.3E-31 273.5 15.9 209 251-486 70-329 (594)
48 3iev_A GTP-binding protein ERA 99.8 1.5E-19 5E-24 198.9 7.6 200 235-485 42-260 (308)
49 2hjg_A GTP-binding protein ENG 99.7 8E-18 2.7E-22 193.7 16.4 125 233-369 205-340 (436)
50 1wf3_A GTP-binding protein; GT 99.7 9.3E-19 3.2E-23 191.8 6.7 115 244-392 48-172 (301)
51 4dcu_A GTP-binding protein ENG 99.7 4.6E-17 1.6E-21 188.5 16.3 123 234-368 226-359 (456)
52 2lkc_A Translation initiation 99.7 8.7E-18 3E-22 167.2 4.0 112 245-367 49-160 (178)
53 4dhe_A Probable GTP-binding pr 99.7 1.9E-16 6.6E-21 164.0 12.0 109 248-367 76-200 (223)
54 1mky_A Probable GTP-binding pr 99.7 8.6E-16 2.9E-20 176.9 18.4 123 233-367 210-344 (439)
55 2dyk_A GTP-binding protein; GT 99.7 5.8E-16 2E-20 151.1 14.4 111 236-367 34-151 (161)
56 1zd9_A ADP-ribosylation factor 99.7 6.5E-16 2.2E-20 156.2 15.2 109 246-367 62-174 (188)
57 3gee_A MNME, tRNA modification 99.7 1.6E-16 5.5E-21 184.3 11.5 116 234-367 264-387 (476)
58 1mky_A Probable GTP-binding pr 99.6 1.1E-15 3.7E-20 176.1 16.4 116 233-367 31-155 (439)
59 3clv_A RAB5 protein, putative; 99.6 8.4E-16 2.9E-20 155.4 12.9 101 251-367 93-193 (208)
60 2fg5_A RAB-22B, RAS-related pr 99.6 1.2E-15 4E-20 154.8 13.9 105 248-367 69-175 (192)
61 1upt_A ARL1, ADP-ribosylation 99.6 1.2E-15 4E-20 150.5 13.2 111 245-367 45-158 (171)
62 3i8s_A Ferrous iron transport 99.6 1.4E-16 4.6E-21 172.3 6.9 124 234-392 33-168 (274)
63 3cph_A RAS-related protein SEC 99.6 9.3E-16 3.2E-20 157.3 12.8 108 244-367 60-171 (213)
64 1r8s_A ADP-ribosylation factor 99.6 1.6E-15 5.5E-20 148.6 13.9 110 246-367 39-151 (164)
65 1zj6_A ADP-ribosylation factor 99.6 5.2E-16 1.8E-20 156.5 10.6 110 246-367 55-167 (187)
66 2efe_B Small GTP-binding prote 99.6 2.3E-15 8E-20 149.9 15.0 103 250-367 60-164 (181)
67 2hxs_A RAB-26, RAS-related pro 99.6 4.7E-16 1.6E-20 154.6 9.8 102 251-367 56-162 (178)
68 1xzp_A Probable tRNA modificat 99.6 3.3E-16 1.1E-20 181.8 9.9 112 234-367 274-394 (482)
69 1r2q_A RAS-related protein RAB 99.6 1.6E-15 5.4E-20 149.0 13.1 103 250-367 54-158 (170)
70 3pqc_A Probable GTP-binding pr 99.6 3.2E-15 1.1E-19 150.6 15.7 104 250-367 67-183 (195)
71 3qq5_A Small GTP-binding prote 99.6 7.5E-16 2.6E-20 175.9 12.1 124 233-392 64-195 (423)
72 1svi_A GTP-binding protein YSX 99.6 4E-15 1.4E-19 150.5 15.9 103 251-367 69-184 (195)
73 1fzq_A ADP-ribosylation factor 99.6 3.2E-15 1.1E-19 150.4 15.2 111 245-367 54-167 (181)
74 3tw8_B RAS-related protein RAB 99.6 6.8E-16 2.3E-20 153.4 10.1 116 237-367 42-160 (181)
75 4bas_A ADP-ribosylation factor 99.6 1.5E-15 5E-20 154.0 12.7 109 245-367 57-178 (199)
76 1ega_A Protein (GTP-binding pr 99.6 5.9E-16 2E-20 169.6 10.4 116 245-392 50-174 (301)
77 3iby_A Ferrous iron transport 99.6 2E-16 6.9E-21 169.3 6.5 122 234-390 31-164 (256)
78 1z0j_A RAB-22, RAS-related pro 99.6 1.4E-15 4.8E-20 149.5 12.1 103 250-367 54-158 (170)
79 1z0f_A RAB14, member RAS oncog 99.6 8.6E-16 2.9E-20 152.4 10.6 103 250-367 63-167 (179)
80 3tkl_A RAS-related protein RAB 99.6 1.3E-15 4.5E-20 154.0 12.1 115 238-367 50-168 (196)
81 1ek0_A Protein (GTP-binding pr 99.6 1.3E-15 4.4E-20 149.6 11.1 105 250-367 51-158 (170)
82 2gj8_A MNME, tRNA modification 99.6 1.5E-15 5.2E-20 151.8 11.7 109 235-367 36-155 (172)
83 2y8e_A RAB-protein 6, GH09086P 99.6 2.2E-15 7.5E-20 149.4 12.8 112 241-367 51-166 (179)
84 2h57_A ADP-ribosylation factor 99.6 1E-15 3.4E-20 154.8 10.0 112 244-367 60-176 (190)
85 3a1s_A Iron(II) transport prot 99.6 6.6E-16 2.3E-20 165.5 9.1 113 235-367 36-156 (258)
86 2b6h_A ADP-ribosylation factor 99.6 3.4E-15 1.2E-19 151.8 13.8 111 245-367 67-180 (192)
87 2wji_A Ferrous iron transport 99.6 1.1E-15 3.7E-20 151.4 9.6 111 237-367 36-154 (165)
88 2h17_A ADP-ribosylation factor 99.6 7.2E-16 2.5E-20 154.7 8.3 110 246-367 60-172 (181)
89 1ksh_A ARF-like protein 2; sma 99.6 1.7E-15 5.7E-20 152.3 10.9 111 245-367 56-169 (186)
90 2hjg_A GTP-binding protein ENG 99.6 8.2E-16 2.8E-20 177.0 9.6 113 234-367 34-154 (436)
91 2bme_A RAB4A, RAS-related prot 99.6 2.6E-15 8.8E-20 150.5 12.0 113 240-367 46-162 (186)
92 2il1_A RAB12; G-protein, GDP, 99.6 2.4E-15 8.2E-20 152.7 11.9 109 245-367 67-179 (192)
93 2p5s_A RAS and EF-hand domain 99.6 7.3E-16 2.5E-20 157.3 8.1 105 251-367 77-186 (199)
94 1zbd_A Rabphilin-3A; G protein 99.6 5.7E-15 2E-19 150.6 14.7 103 250-367 56-160 (203)
95 1m2o_B GTP-binding protein SAR 99.6 2.9E-15 9.8E-20 152.1 12.2 112 244-367 60-181 (190)
96 2g6b_A RAS-related protein RAB 99.6 2E-15 6.9E-20 150.2 10.8 102 251-367 60-163 (180)
97 1u8z_A RAS-related protein RAL 99.6 4.6E-15 1.6E-19 145.1 13.0 102 251-367 52-156 (168)
98 1g16_A RAS-related protein SEC 99.6 2.3E-15 8E-20 147.9 10.9 101 251-367 52-154 (170)
99 2hup_A RAS-related protein RAB 99.6 1E-14 3.5E-19 149.3 16.0 110 244-367 69-182 (201)
100 1z2a_A RAS-related protein RAB 99.6 1.9E-15 6.7E-20 148.2 10.1 102 251-367 54-156 (168)
101 1moz_A ARL1, ADP-ribosylation 99.6 1.1E-15 3.9E-20 152.7 8.6 110 246-367 57-169 (183)
102 4dsu_A GTPase KRAS, isoform 2B 99.6 3E-15 1E-19 150.0 11.6 101 251-367 52-155 (189)
103 3k53_A Ferrous iron transport 99.6 8.7E-16 3E-20 165.4 8.2 115 234-367 33-155 (271)
104 1wms_A RAB-9, RAB9, RAS-relate 99.6 5.1E-15 1.8E-19 146.9 13.1 108 244-367 47-163 (177)
105 2gf9_A RAS-related protein RAB 99.6 1.5E-15 5.2E-20 153.3 9.3 103 250-367 70-174 (189)
106 4gzl_A RAS-related C3 botulinu 99.6 1.7E-15 5.8E-20 155.6 9.7 106 250-367 77-194 (204)
107 1kao_A RAP2A; GTP-binding prot 99.6 2.2E-15 7.5E-20 147.3 9.6 101 251-367 51-155 (167)
108 3bc1_A RAS-related protein RAB 99.6 6E-15 2.1E-19 148.2 12.9 103 250-367 69-174 (195)
109 2oil_A CATX-8, RAS-related pro 99.6 3.7E-15 1.3E-19 150.8 11.4 103 250-367 73-177 (193)
110 1c1y_A RAS-related protein RAP 99.6 3.8E-15 1.3E-19 146.0 11.0 103 250-367 50-156 (167)
111 2fh5_B SR-beta, signal recogni 99.6 1.3E-14 4.5E-19 149.4 15.4 68 250-325 53-129 (214)
112 3e1y_E Eukaryotic peptide chai 99.6 2E-15 6.9E-20 156.0 9.2 118 397-516 3-121 (204)
113 2a9k_A RAS-related protein RAL 99.6 1.6E-14 5.6E-19 144.2 15.3 101 251-367 66-170 (187)
114 2ew1_A RAS-related protein RAB 99.6 2.8E-15 9.7E-20 154.1 9.9 109 244-367 66-178 (201)
115 1x3s_A RAS-related protein RAB 99.6 7.2E-15 2.4E-19 148.2 12.6 102 250-367 63-167 (195)
116 2erx_A GTP-binding protein DI- 99.6 1.3E-14 4.5E-19 142.6 14.1 101 251-367 51-156 (172)
117 2qu8_A Putative nucleolar GTP- 99.6 1.5E-14 5.2E-19 151.1 15.3 122 237-367 62-194 (228)
118 2f7s_A C25KG, RAS-related prot 99.6 4.9E-15 1.7E-19 152.9 11.3 100 250-367 83-188 (217)
119 2fu5_C RAS-related protein RAB 99.6 2.3E-15 7.9E-20 150.6 8.6 113 240-367 44-160 (183)
120 3dz8_A RAS-related protein RAB 99.6 2.9E-15 1E-19 151.6 9.4 106 247-367 68-175 (191)
121 3geh_A MNME, tRNA modification 99.6 8.8E-16 3E-20 177.5 6.1 110 235-367 256-373 (462)
122 2bov_A RAla, RAS-related prote 99.6 2.1E-14 7.3E-19 146.2 15.7 101 251-367 62-166 (206)
123 2x77_A ADP-ribosylation factor 99.6 1.7E-15 5.7E-20 152.8 7.0 110 246-367 61-173 (189)
124 1z06_A RAS-related protein RAB 99.6 4.7E-15 1.6E-19 149.7 10.2 102 251-367 69-177 (189)
125 2wjg_A FEOB, ferrous iron tran 99.6 3.9E-15 1.3E-19 149.6 9.6 113 235-367 38-158 (188)
126 1z08_A RAS-related protein RAB 99.6 5.2E-15 1.8E-19 145.7 10.2 102 251-367 55-158 (170)
127 1f6b_A SAR1; gtpases, N-termin 99.6 6.1E-15 2.1E-19 150.8 11.0 110 245-367 63-188 (198)
128 2a5j_A RAS-related protein RAB 99.6 5.6E-15 1.9E-19 149.5 10.4 102 251-367 70-173 (191)
129 3t1o_A Gliding protein MGLA; G 99.6 4.4E-15 1.5E-19 149.8 9.4 101 250-367 73-181 (198)
130 3gj0_A GTP-binding nuclear pro 99.6 2E-15 7E-20 156.5 7.1 116 235-367 48-164 (221)
131 2fn4_A P23, RAS-related protei 99.6 8E-15 2.7E-19 145.6 10.8 101 251-367 57-161 (181)
132 1ky3_A GTP-binding protein YPT 99.6 6E-15 2E-19 146.7 9.7 104 250-367 57-167 (182)
133 3q85_A GTP-binding protein REM 99.6 1.4E-14 4.9E-19 142.5 12.2 101 251-367 51-156 (169)
134 2nzj_A GTP-binding protein REM 99.6 9.1E-15 3.1E-19 144.6 10.6 101 251-367 52-158 (175)
135 3kkq_A RAS-related protein M-R 99.6 1.5E-14 5.1E-19 144.7 12.2 101 251-367 66-171 (183)
136 2bcg_Y Protein YP2, GTP-bindin 99.6 1.2E-14 4.2E-19 148.6 11.9 107 246-367 50-160 (206)
137 3lxw_A GTPase IMAP family memb 99.6 1.5E-14 5E-19 153.9 12.6 120 236-367 55-197 (247)
138 2o52_A RAS-related protein RAB 99.6 8.5E-15 2.9E-19 149.7 10.4 107 246-367 67-177 (200)
139 2xtp_A GTPase IMAP family memb 99.6 1E-14 3.4E-19 155.7 11.3 119 237-367 57-197 (260)
140 1mh1_A RAC1; GTP-binding, GTPa 99.5 1.3E-14 4.5E-19 144.9 11.1 105 251-367 53-169 (186)
141 3b1v_A Ferrous iron uptake tra 99.5 2.5E-15 8.7E-20 162.2 6.2 111 236-367 35-153 (272)
142 3o47_A ADP-ribosylation factor 99.5 6.2E-15 2.1E-19 163.5 9.3 114 243-367 201-316 (329)
143 2ce2_X GTPase HRAS; signaling 99.5 3E-14 1E-18 138.8 13.1 100 251-367 51-154 (166)
144 3llu_A RAS-related GTP-binding 99.5 2.4E-14 8.2E-19 145.8 12.9 110 250-367 68-186 (196)
145 1vg8_A RAS-related protein RAB 99.5 7.6E-15 2.6E-19 149.8 9.2 101 251-367 57-164 (207)
146 4djt_A GTP-binding nuclear pro 99.5 5.7E-15 2E-19 152.5 8.3 101 251-367 61-164 (218)
147 4dcu_A GTP-binding protein ENG 99.5 9.4E-15 3.2E-19 169.1 10.8 113 234-367 54-174 (456)
148 3reg_A RHO-like small GTPase; 99.5 1.2E-14 4E-19 147.4 10.2 106 251-367 71-177 (194)
149 3con_A GTPase NRAS; structural 99.5 1.7E-14 5.9E-19 145.3 11.3 100 251-367 69-172 (190)
150 2gf0_A GTP-binding protein DI- 99.5 4.8E-14 1.6E-18 142.8 14.5 101 250-367 55-160 (199)
151 3oes_A GTPase rhebl1; small GT 99.5 1.1E-14 3.7E-19 148.8 9.6 104 248-367 69-176 (201)
152 3q72_A GTP-binding protein RAD 99.5 8E-15 2.7E-19 143.9 8.1 102 250-367 48-153 (166)
153 2atx_A Small GTP binding prote 99.5 2.3E-14 7.9E-19 145.0 11.6 105 251-367 66-182 (194)
154 2j1l_A RHO-related GTP-binding 99.5 4.8E-14 1.6E-18 145.8 13.7 105 251-367 82-198 (214)
155 3r7w_A Gtpase1, GTP-binding pr 99.5 6.3E-14 2.2E-18 153.8 15.2 127 235-367 35-170 (307)
156 3t5g_A GTP-binding protein RHE 99.5 6.4E-15 2.2E-19 147.1 6.3 101 251-367 54-158 (181)
157 3t5d_A Septin-7; GTP-binding p 99.5 6.1E-14 2.1E-18 151.2 14.4 114 239-367 51-193 (274)
158 2gco_A H9, RHO-related GTP-bin 99.5 5.7E-14 1.9E-18 143.6 12.7 106 251-367 73-189 (201)
159 2atv_A RERG, RAS-like estrogen 99.5 6.6E-14 2.3E-18 142.2 13.1 101 250-367 75-180 (196)
160 2yc2_C IFT27, small RAB-relate 99.5 1.4E-14 4.7E-19 147.7 7.9 103 250-367 72-181 (208)
161 4dkx_A RAS-related protein RAB 99.5 2.1E-14 7.1E-19 149.8 9.4 103 250-367 61-165 (216)
162 3cpj_B GTP-binding protein YPT 99.5 2E-14 6.8E-19 149.5 9.1 107 246-367 55-165 (223)
163 3lvq_E ARF-GAP with SH3 domain 99.5 3.4E-14 1.2E-18 166.0 11.9 113 244-367 359-473 (497)
164 3ihw_A Centg3; RAS, centaurin, 99.5 8E-14 2.7E-18 140.8 12.6 100 251-367 67-169 (184)
165 2fv8_A H6, RHO-related GTP-bin 99.5 7.1E-14 2.4E-18 143.5 12.3 106 251-367 73-189 (207)
166 3th5_A RAS-related C3 botulinu 99.2 1.7E-15 5.9E-20 155.0 0.0 108 250-367 77-194 (204)
167 3cbq_A GTP-binding protein REM 99.5 6.6E-14 2.2E-18 142.9 11.7 102 251-367 72-177 (195)
168 2j0v_A RAC-like GTP-binding pr 99.5 4.3E-14 1.5E-18 145.3 9.8 105 251-367 57-169 (212)
169 3bwd_D RAC-like GTP-binding pr 99.5 9.7E-15 3.3E-19 145.6 4.8 108 250-367 55-170 (182)
170 2q3h_A RAS homolog gene family 99.5 4.3E-14 1.5E-18 143.9 8.5 106 251-367 68-184 (201)
171 3q3j_B RHO-related GTP-binding 99.5 1.2E-13 4.2E-18 142.9 11.4 110 249-367 73-192 (214)
172 3c5c_A RAS-like protein 12; GD 99.5 6.8E-14 2.3E-18 141.4 9.2 101 250-367 68-175 (187)
173 2cxx_A Probable GTP-binding pr 99.5 1.7E-13 5.7E-18 137.5 11.6 108 252-367 45-173 (190)
174 2e87_A Hypothetical protein PH 99.5 3.6E-13 1.2E-17 150.9 15.5 110 243-367 206-325 (357)
175 3l0i_B RAS-related protein RAB 99.5 2.5E-15 8.7E-20 153.3 -1.9 110 243-367 72-185 (199)
176 3def_A T7I23.11 protein; chlor 99.5 7.1E-13 2.4E-17 141.9 16.5 84 236-325 69-165 (262)
177 2qtf_A Protein HFLX, GTP-bindi 99.4 8E-13 2.7E-17 148.4 16.7 124 235-367 210-343 (364)
178 1m7b_A RND3/RHOE small GTP-bin 99.4 2.6E-13 8.8E-18 136.4 11.3 107 250-367 54-172 (184)
179 2iwr_A Centaurin gamma 1; ANK 99.4 1.4E-12 4.8E-17 129.7 16.4 98 251-367 54-158 (178)
180 2wkq_A NPH1-1, RAS-related C3 99.4 5E-13 1.7E-17 146.7 13.7 110 246-367 196-319 (332)
181 1gwn_A RHO-related GTP-binding 99.4 4.5E-13 1.5E-17 137.9 10.9 107 250-367 75-193 (205)
182 2zej_A Dardarin, leucine-rich 99.4 4.8E-13 1.6E-17 134.7 10.4 110 250-367 55-167 (184)
183 3lxx_A GTPase IMAP family memb 99.4 5E-13 1.7E-17 140.8 10.9 116 236-367 63-203 (239)
184 1lnz_A SPO0B-associated GTP-bi 99.4 3E-13 1E-17 150.5 9.6 109 245-367 199-319 (342)
185 2aka_B Dynamin-1; fusion prote 99.4 1E-12 3.5E-17 142.6 13.2 104 250-367 124-242 (299)
186 1h65_A Chloroplast outer envel 99.4 4.3E-12 1.5E-16 136.4 17.2 79 242-326 78-169 (270)
187 1jwy_B Dynamin A GTPase domain 99.4 1E-12 3.5E-17 143.9 11.5 83 236-325 115-212 (315)
188 3dpu_A RAB family protein; roc 99.4 9.6E-13 3.3E-17 155.2 11.3 100 250-367 97-197 (535)
189 1nrj_B SR-beta, signal recogni 99.4 1.7E-12 5.7E-17 134.0 11.4 105 250-365 54-171 (218)
190 2g3y_A GTP-binding protein GEM 99.3 6.4E-13 2.2E-17 137.9 6.7 101 252-367 88-192 (211)
191 2j69_A Bacterial dynamin-like 99.3 6.7E-12 2.3E-16 152.2 16.5 67 251-325 174-244 (695)
192 2cjw_A GTP-binding protein GEM 99.3 1.2E-12 4.2E-17 133.0 8.3 100 252-367 57-161 (192)
193 1pui_A ENGB, probable GTP-bind 99.3 2.1E-11 7.2E-16 124.7 14.6 103 252-367 73-188 (210)
194 2f9l_A RAB11B, member RAS onco 99.3 1.7E-11 5.8E-16 124.9 13.2 108 245-367 46-157 (199)
195 2ged_A SR-beta, signal recogni 99.3 1E-11 3.4E-16 125.3 9.3 70 249-325 89-170 (193)
196 2qag_A Septin-2, protein NEDD5 99.2 3.4E-11 1.2E-15 135.1 12.0 114 238-367 80-222 (361)
197 2www_A Methylmalonic aciduria 99.2 2.5E-11 8.5E-16 135.6 10.5 102 249-367 165-268 (349)
198 1wxq_A GTP-binding protein; st 99.2 1.1E-11 3.9E-16 140.6 7.2 37 251-287 71-114 (397)
199 1oix_A RAS-related protein RAB 99.2 6.3E-11 2.2E-15 120.1 11.2 110 243-367 68-181 (191)
200 3p32_A Probable GTPase RV1496/ 99.2 4.4E-11 1.5E-15 133.8 10.0 103 248-367 169-273 (355)
201 2p67_A LAO/AO transport system 99.2 1.3E-11 4.6E-16 137.3 5.7 103 248-367 146-250 (341)
202 3zvr_A Dynamin-1; hydrolase, D 99.2 1E-10 3.5E-15 141.4 13.0 119 234-367 132-267 (772)
203 4a9a_A Ribosome-interacting GT 99.2 4E-11 1.4E-15 134.6 8.9 82 234-323 102-194 (376)
204 2x2e_A Dynamin-1; nitration, h 99.1 7E-11 2.4E-15 132.1 9.5 119 235-367 113-247 (353)
205 3r7w_B Gtpase2, GTP-binding pr 99.1 1.4E-10 4.9E-15 127.4 11.4 113 250-367 45-163 (331)
206 2qpt_A EH domain-containing pr 99.1 1.5E-10 5.2E-15 136.6 12.3 79 251-338 154-243 (550)
207 1udx_A The GTP-binding protein 99.1 1.2E-10 4E-15 132.7 10.4 107 246-367 199-314 (416)
208 3t34_A Dynamin-related protein 99.1 2.3E-10 7.9E-15 128.1 11.6 119 235-368 119-251 (360)
209 3c5h_A Glucocorticoid receptor 99.1 1.1E-10 3.9E-15 124.3 8.6 79 274-367 162-244 (255)
210 2wsm_A Hydrogenase expression/ 99.1 7.4E-11 2.5E-15 121.9 6.2 96 250-367 108-203 (221)
211 1zcb_A G alpha I/13; GTP-bindi 98.9 3.2E-10 1.1E-14 127.0 2.6 130 237-367 187-342 (362)
212 1jal_A YCHF protein; nucleotid 98.9 4E-09 1.4E-13 117.8 9.8 37 250-286 65-108 (363)
213 2qm8_A GTPase/ATPase; G protei 98.8 1.1E-09 3.7E-14 121.7 4.5 104 248-367 145-250 (337)
214 1yrb_A ATP(GTP)binding protein 98.8 6.4E-09 2.2E-13 110.3 10.1 106 250-367 108-246 (262)
215 2qag_C Septin-7; cell cycle, c 98.8 3.1E-08 1.1E-12 112.8 15.6 101 251-367 88-216 (418)
216 1cip_A Protein (guanine nucleo 98.8 9.8E-10 3.3E-14 122.7 2.9 131 236-367 178-333 (353)
217 2qnr_A Septin-2, protein NEDD5 98.8 2.4E-08 8.1E-13 109.1 12.8 48 313-368 157-204 (301)
218 2dby_A GTP-binding protein; GD 98.8 6.7E-09 2.3E-13 116.5 7.2 37 250-286 68-111 (368)
219 2j37_W Signal recognition part 98.7 1.4E-07 4.9E-12 109.7 14.3 116 249-390 182-310 (504)
220 4fid_A G protein alpha subunit 98.6 2.7E-08 9.1E-13 110.1 7.5 51 235-285 145-195 (340)
221 3ohm_A Guanine nucleotide-bind 98.6 5E-09 1.7E-13 115.5 1.6 127 235-367 151-307 (327)
222 1azs_C GS-alpha; complex (lyas 98.6 5.4E-08 1.8E-12 110.1 7.1 50 237-286 203-252 (402)
223 1xe1_A Hypothetical protein PF 98.5 5E-07 1.7E-11 83.2 11.3 80 398-482 32-112 (116)
224 2qag_B Septin-6, protein NEDD5 98.5 4.9E-07 1.7E-11 102.8 13.6 67 277-359 151-217 (427)
225 2hf9_A Probable hydrogenase ni 98.5 1.5E-07 5.2E-12 97.2 7.6 96 250-367 118-213 (226)
226 3ec1_A YQEH GTPase; atnos1, at 98.4 3.6E-08 1.2E-12 110.8 -0.1 113 234-367 198-320 (369)
227 3h2y_A GTPase family protein; 98.4 3E-08 1E-12 111.4 -1.3 114 233-367 196-319 (368)
228 2ohf_A Protein OLA1, GTP-bindi 98.3 3.7E-07 1.3E-11 102.9 6.3 37 251-287 86-129 (396)
229 3sop_A Neuronal-specific septi 98.3 8.4E-06 2.9E-10 87.5 15.3 62 275-347 112-174 (270)
230 3ttv_A Catalase HPII; heme ori 98.2 2.4E-07 8.2E-12 110.2 2.2 101 90-203 77-177 (753)
231 1tq4_A IIGP1, interferon-induc 98.1 1.4E-05 4.8E-10 90.8 13.5 115 252-393 121-253 (413)
232 2v3c_C SRP54, signal recogniti 98.1 1.4E-06 4.6E-11 99.8 4.5 66 250-325 180-252 (432)
233 3ej6_A Catalase-3; heme, hydro 98.1 7.9E-07 2.7E-11 105.2 1.7 99 91-203 22-120 (688)
234 1ni3_A YCHF GTPase, YCHF GTP-b 98.1 6E-06 2E-10 93.2 8.7 36 251-286 85-127 (392)
235 1u0l_A Probable GTPase ENGC; p 98.0 2E-06 6.7E-11 93.9 4.0 99 252-367 64-162 (301)
236 3dm5_A SRP54, signal recogniti 98.0 6.3E-05 2.2E-09 85.9 16.5 93 250-367 182-280 (443)
237 1puj_A YLQF, conserved hypothe 98.0 8.1E-06 2.8E-10 88.2 8.7 92 255-367 3-95 (282)
238 2iuf_A Catalase; oxidoreductas 98.0 1.1E-06 3.9E-11 104.1 1.5 97 93-203 16-112 (688)
239 1a4e_A Catalase A; oxidoreduct 98.0 1.7E-06 6E-11 98.8 2.5 100 91-203 6-105 (488)
240 2j2m_A Catalase; functional cl 97.9 2.1E-06 7.3E-11 98.2 2.0 99 92-203 7-105 (491)
241 1dgf_A Catalase; heme, NADPH, 97.9 2.3E-06 7.9E-11 98.1 2.0 99 92-203 22-120 (497)
242 1m7s_A Catalase; beta barrel, 97.9 2.2E-06 7.6E-11 97.9 1.7 97 93-203 4-100 (484)
243 2isa_A Catalase; peroxidase, h 97.9 2.4E-06 8.2E-11 97.7 1.9 98 93-203 5-102 (483)
244 1qwl_A KATA catalase; beta bar 97.9 2.7E-06 9.4E-11 97.5 2.3 99 92-203 7-105 (505)
245 1si8_A Catalase; N-terminal AR 97.9 2.3E-06 7.9E-11 97.8 1.6 98 93-203 6-103 (484)
246 1gwe_A Catalase; oxidoreductas 97.9 3.3E-06 1.1E-10 96.8 2.1 97 93-203 13-109 (503)
247 2xq1_A Peroxisomal catalase; o 97.8 5E-06 1.7E-10 95.5 2.1 99 92-203 8-116 (509)
248 3kl4_A SRP54, signal recogniti 97.8 0.00016 5.5E-09 82.5 14.0 93 250-367 179-279 (433)
249 1puj_A YLQF, conserved hypothe 97.8 2.9E-05 1E-09 83.8 7.3 26 24-49 118-143 (282)
250 2xtz_A Guanine nucleotide-bind 97.8 1.3E-05 4.4E-10 89.4 4.5 48 238-285 164-217 (354)
251 1f5n_A Interferon-induced guan 97.6 2.6E-05 9E-10 92.2 4.9 26 24-49 36-61 (592)
252 1j8m_F SRP54, signal recogniti 97.6 0.00013 4.5E-09 79.2 9.4 94 249-367 179-280 (297)
253 1sy7_A Catalase 1; heme oxidat 97.5 1.1E-05 3.9E-10 96.8 -0.0 98 93-203 20-120 (715)
254 3cnl_A YLQF, putative uncharac 97.5 4.5E-05 1.5E-09 81.5 3.1 85 259-367 5-90 (262)
255 2yv5_A YJEQ protein; hydrolase 97.4 0.00015 5.3E-09 78.8 7.3 85 270-368 75-159 (302)
256 3ec1_A YQEH GTPase; atnos1, at 97.4 0.00012 4E-09 82.1 6.5 102 252-367 50-151 (369)
257 3h2y_A GTPase family protein; 97.4 0.00016 5.4E-09 81.0 6.4 102 261-390 56-157 (368)
258 3l82_B F-box only protein 4; T 97.1 0.00025 8.6E-09 72.7 4.2 93 260-367 111-212 (227)
259 3cnl_A YLQF, putative uncharac 97.1 0.00017 5.8E-09 76.9 2.6 23 27-49 100-122 (262)
260 2xxa_A Signal recognition part 97.0 0.00074 2.5E-08 77.2 7.4 66 249-324 182-253 (433)
261 1t9h_A YLOQ, probable GTPase E 97.0 0.00064 2.2E-08 74.1 6.2 85 271-368 83-167 (307)
262 3e70_C DPA, signal recognition 96.9 0.0031 1.1E-07 69.4 10.7 91 251-367 212-309 (328)
263 3szr_A Interferon-induced GTP- 96.8 0.0017 5.8E-08 77.5 8.2 21 28-48 47-67 (608)
264 3l2o_B F-box only protein 4; s 96.8 0.0011 3.6E-08 71.3 5.2 97 259-367 195-297 (312)
265 1d1n_A Initiation factor 2; be 96.6 0.0013 4.5E-08 58.9 4.2 80 402-483 8-90 (99)
266 2yhs_A FTSY, cell division pro 96.6 0.0042 1.4E-07 71.7 9.5 24 26-49 293-316 (503)
267 3q5d_A Atlastin-1; G protein, 96.3 0.013 4.6E-07 66.9 10.6 24 26-49 67-90 (447)
268 2crv_A IF-2MT, translation ini 96.2 0.0061 2.1E-07 56.5 5.7 81 402-483 12-98 (120)
269 2ffh_A Protein (FFH); SRP54, s 95.9 0.012 4.2E-07 66.8 7.9 64 250-324 180-250 (425)
270 1zo1_I IF2, translation initia 95.9 0.017 5.7E-07 67.1 9.1 95 387-483 395-492 (501)
271 2rcn_A Probable GTPase ENGC; Y 95.9 0.013 4.4E-07 65.1 7.8 81 272-367 128-208 (358)
272 1vma_A Cell division protein F 95.7 0.02 6.8E-07 62.3 8.5 23 27-49 105-127 (306)
273 3c8u_A Fructokinase; YP_612366 94.9 0.015 5.2E-07 59.1 3.9 27 23-49 19-45 (208)
274 1ye8_A Protein THEP1, hypothet 94.3 0.02 6.7E-07 57.2 3.1 22 28-49 2-23 (178)
275 1lvg_A Guanylate kinase, GMP k 94.2 0.021 7.1E-07 57.8 2.9 23 27-49 5-27 (198)
276 1kgd_A CASK, peripheral plasma 94.2 0.021 7.3E-07 56.6 2.9 23 27-49 6-28 (180)
277 3izy_P Translation initiation 94.1 0.064 2.2E-06 62.7 7.2 97 384-482 431-534 (537)
278 1znw_A Guanylate kinase, GMP k 93.6 0.031 1E-06 56.7 2.9 23 27-49 21-43 (207)
279 3tr0_A Guanylate kinase, GMP k 93.6 0.031 1.1E-06 56.0 3.0 23 27-49 8-30 (205)
280 3a00_A Guanylate kinase, GMP k 93.5 0.032 1.1E-06 55.6 2.8 21 29-49 4-24 (186)
281 1g7s_A Translation initiation 93.5 0.27 9.1E-06 58.3 11.2 83 399-483 462-548 (594)
282 1gvn_B Zeta; postsegregational 93.4 0.075 2.6E-06 57.0 5.7 47 3-49 5-56 (287)
283 1zp6_A Hypothetical protein AT 93.3 0.051 1.7E-06 53.8 3.8 25 24-48 7-31 (191)
284 3tqc_A Pantothenate kinase; bi 93.2 0.077 2.6E-06 58.0 5.5 27 23-49 89-115 (321)
285 3ney_A 55 kDa erythrocyte memb 93.2 0.047 1.6E-06 55.5 3.6 24 26-49 19-42 (197)
286 4eun_A Thermoresistant glucoki 93.2 0.045 1.5E-06 55.1 3.4 27 24-50 27-53 (200)
287 1z6g_A Guanylate kinase; struc 93.2 0.039 1.3E-06 56.7 2.9 23 27-49 24-46 (218)
288 4gp7_A Metallophosphoesterase; 93.0 0.036 1.2E-06 54.5 2.4 21 28-48 11-31 (171)
289 1s96_A Guanylate kinase, GMP k 93.0 0.044 1.5E-06 56.5 3.0 24 26-49 16-39 (219)
290 3asz_A Uridine kinase; cytidin 92.8 0.061 2.1E-06 54.3 3.7 25 25-49 5-29 (211)
291 3tau_A Guanylate kinase, GMP k 92.8 0.049 1.7E-06 55.3 2.9 24 26-49 8-31 (208)
292 1rz3_A Hypothetical protein rb 92.6 0.13 4.3E-06 51.9 5.8 40 9-49 6-45 (201)
293 1htw_A HI0065; nucleotide-bind 92.6 0.056 1.9E-06 52.8 2.9 26 24-49 31-56 (158)
294 3tlx_A Adenylate kinase 2; str 92.5 0.14 4.7E-06 53.4 6.0 27 24-50 27-53 (243)
295 3ec2_A DNA replication protein 92.5 0.073 2.5E-06 52.3 3.7 25 25-49 37-61 (180)
296 3tif_A Uncharacterized ABC tra 92.4 0.048 1.6E-06 56.8 2.4 22 28-49 33-54 (235)
297 1ex7_A Guanylate kinase; subst 92.4 0.06 2.1E-06 54.2 3.0 21 29-49 4-24 (186)
298 2j41_A Guanylate kinase; GMP, 92.4 0.069 2.3E-06 53.4 3.4 24 26-49 6-29 (207)
299 2pcj_A ABC transporter, lipopr 92.3 0.054 1.8E-06 56.0 2.6 21 28-48 32-52 (224)
300 2rcn_A Probable GTPase ENGC; Y 92.3 0.056 1.9E-06 60.0 2.8 22 28-49 217-238 (358)
301 1kag_A SKI, shikimate kinase I 92.1 0.074 2.5E-06 51.7 3.2 24 27-50 5-28 (173)
302 2bdt_A BH3686; alpha-beta prot 92.0 0.07 2.4E-06 52.9 2.9 21 28-48 4-24 (189)
303 1knq_A Gluconate kinase; ALFA/ 92.0 0.1 3.4E-06 50.9 4.1 24 26-49 8-31 (175)
304 3lw7_A Adenylate kinase relate 92.0 0.074 2.5E-06 51.2 3.0 23 27-50 2-24 (179)
305 3b85_A Phosphate starvation-in 92.0 0.065 2.2E-06 54.8 2.7 22 28-49 24-45 (208)
306 2bbw_A Adenylate kinase 4, AK4 92.0 0.081 2.8E-06 55.0 3.4 26 26-51 27-52 (246)
307 1odf_A YGR205W, hypothetical 3 91.9 0.17 5.7E-06 54.5 6.0 27 23-49 28-54 (290)
308 3kb2_A SPBC2 prophage-derived 91.9 0.081 2.8E-06 51.1 3.2 22 28-49 3-24 (173)
309 2onk_A Molybdate/tungstate ABC 91.9 0.068 2.3E-06 55.9 2.7 22 28-49 26-47 (240)
310 2v9p_A Replication protein E1; 91.8 0.076 2.6E-06 57.7 3.1 26 24-49 124-149 (305)
311 4dzz_A Plasmid partitioning pr 91.8 0.49 1.7E-05 47.0 9.0 65 250-324 75-143 (206)
312 2cbz_A Multidrug resistance-as 91.8 0.064 2.2E-06 55.9 2.4 22 28-49 33-54 (237)
313 2yv5_A YJEQ protein; hydrolase 91.8 0.07 2.4E-06 57.7 2.8 21 28-49 167-187 (302)
314 2pze_A Cystic fibrosis transme 91.7 0.065 2.2E-06 55.6 2.4 22 28-49 36-57 (229)
315 2qor_A Guanylate kinase; phosp 91.7 0.08 2.8E-06 53.4 3.0 25 25-49 11-35 (204)
316 1g6h_A High-affinity branched- 91.7 0.066 2.2E-06 56.5 2.4 22 28-49 35-56 (257)
317 4g1u_C Hemin import ATP-bindin 91.6 0.066 2.3E-06 56.9 2.3 22 28-49 39-60 (266)
318 3uie_A Adenylyl-sulfate kinase 91.5 0.1 3.6E-06 52.3 3.6 27 23-49 22-48 (200)
319 1sgw_A Putative ABC transporte 91.5 0.072 2.4E-06 54.8 2.4 22 28-49 37-58 (214)
320 3gfo_A Cobalt import ATP-bindi 91.5 0.07 2.4E-06 57.0 2.4 21 29-49 37-57 (275)
321 1b0u_A Histidine permease; ABC 91.5 0.07 2.4E-06 56.5 2.4 22 28-49 34-55 (262)
322 1mv5_A LMRA, multidrug resista 91.5 0.071 2.4E-06 55.8 2.4 22 28-49 30-51 (243)
323 1sq5_A Pantothenate kinase; P- 91.5 0.17 5.9E-06 54.7 5.5 26 24-49 78-103 (308)
324 3aez_A Pantothenate kinase; tr 91.5 0.11 3.7E-06 56.6 3.9 27 23-49 87-113 (312)
325 2eyu_A Twitching motility prot 91.5 0.085 2.9E-06 55.9 3.0 26 24-49 23-48 (261)
326 1ji0_A ABC transporter; ATP bi 91.5 0.072 2.5E-06 55.6 2.4 22 28-49 34-55 (240)
327 2ff7_A Alpha-hemolysin translo 91.4 0.072 2.5E-06 55.9 2.4 22 28-49 37-58 (247)
328 2d2e_A SUFC protein; ABC-ATPas 91.4 0.08 2.7E-06 55.6 2.7 21 28-48 31-51 (250)
329 4a74_A DNA repair and recombin 91.4 0.093 3.2E-06 53.3 3.1 23 27-49 26-48 (231)
330 1np6_A Molybdopterin-guanine d 91.4 0.095 3.2E-06 52.1 3.0 23 27-49 7-29 (174)
331 2ehv_A Hypothetical protein PH 91.3 0.085 2.9E-06 54.3 2.8 21 28-48 32-52 (251)
332 3t61_A Gluconokinase; PSI-biol 91.3 0.1 3.5E-06 52.3 3.2 23 27-49 19-41 (202)
333 2ghi_A Transport protein; mult 91.3 0.076 2.6E-06 56.2 2.4 22 28-49 48-69 (260)
334 2i3b_A HCR-ntpase, human cance 91.2 0.097 3.3E-06 52.7 2.9 22 28-49 3-24 (189)
335 3fb4_A Adenylate kinase; psych 91.2 0.1 3.5E-06 52.7 3.2 25 27-51 1-25 (216)
336 3lnc_A Guanylate kinase, GMP k 91.2 0.072 2.5E-06 54.8 2.0 23 27-49 28-51 (231)
337 3cm0_A Adenylate kinase; ATP-b 91.2 0.12 4.2E-06 50.7 3.6 24 26-49 4-27 (186)
338 2if2_A Dephospho-COA kinase; a 91.1 0.098 3.4E-06 52.4 3.0 21 28-48 3-23 (204)
339 2jeo_A Uridine-cytidine kinase 91.1 0.12 4.2E-06 53.7 3.8 27 25-51 24-50 (245)
340 3dl0_A Adenylate kinase; phosp 91.1 0.11 3.8E-06 52.6 3.3 25 27-51 1-25 (216)
341 1vpl_A ABC transporter, ATP-bi 91.0 0.083 2.9E-06 55.8 2.4 22 28-49 43-64 (256)
342 2zu0_C Probable ATP-dependent 91.0 0.091 3.1E-06 55.8 2.7 21 28-48 48-68 (267)
343 2olj_A Amino acid ABC transpor 91.0 0.084 2.9E-06 56.0 2.4 22 28-49 52-73 (263)
344 2qi9_C Vitamin B12 import ATP- 91.0 0.084 2.9E-06 55.5 2.4 22 28-49 28-49 (249)
345 1ly1_A Polynucleotide kinase; 90.9 0.11 3.8E-06 50.5 3.1 22 27-48 3-24 (181)
346 2ixe_A Antigen peptide transpo 90.9 0.087 3E-06 56.1 2.4 22 28-49 47-68 (271)
347 1cke_A CK, MSSA, protein (cyti 90.9 0.12 4E-06 52.7 3.2 24 27-50 6-29 (227)
348 2f1r_A Molybdopterin-guanine d 90.9 0.066 2.2E-06 53.1 1.3 22 28-49 4-25 (171)
349 3e4w_A Putative uncharacterize 90.9 0.05 1.7E-06 59.3 0.5 70 118-202 12-81 (320)
350 2jaq_A Deoxyguanosine kinase; 90.8 0.12 4.2E-06 51.3 3.3 23 28-50 2-24 (205)
351 2yz2_A Putative ABC transporte 90.8 0.091 3.1E-06 55.8 2.4 21 28-48 35-55 (266)
352 1t9h_A YLOQ, probable GTPase E 90.8 0.041 1.4E-06 59.8 -0.3 23 27-49 174-196 (307)
353 1u0l_A Probable GTPase ENGC; p 90.8 0.086 2.9E-06 56.9 2.2 22 28-49 171-192 (301)
354 1jjv_A Dephospho-COA kinase; P 90.7 0.12 4.1E-06 51.9 3.1 22 27-48 3-24 (206)
355 3vaa_A Shikimate kinase, SK; s 90.7 0.13 4.4E-06 51.6 3.3 24 27-50 26-49 (199)
356 2rhm_A Putative kinase; P-loop 90.6 0.17 5.9E-06 49.8 4.2 24 26-49 5-28 (193)
357 2ihy_A ABC transporter, ATP-bi 90.6 0.095 3.3E-06 56.1 2.4 22 28-49 49-70 (279)
358 2nq2_C Hypothetical ABC transp 90.6 0.096 3.3E-06 55.2 2.3 22 28-49 33-54 (253)
359 2qt1_A Nicotinamide riboside k 90.6 0.15 5.3E-06 51.2 3.8 26 24-49 19-44 (207)
360 1nks_A Adenylate kinase; therm 90.5 0.14 4.7E-06 50.3 3.3 22 28-49 3-24 (194)
361 2oap_1 GSPE-2, type II secreti 90.5 0.18 6.1E-06 58.7 4.7 23 27-49 261-283 (511)
362 1kht_A Adenylate kinase; phosp 90.1 0.14 4.6E-06 50.4 2.9 23 27-49 4-26 (192)
363 2yvu_A Probable adenylyl-sulfa 90.1 0.18 6E-06 49.8 3.7 27 23-49 10-36 (186)
364 3trf_A Shikimate kinase, SK; a 90.0 0.16 5.4E-06 49.9 3.3 24 26-49 5-28 (185)
365 2bbs_A Cystic fibrosis transme 90.0 0.12 4.2E-06 55.6 2.6 22 28-49 66-87 (290)
366 2gza_A Type IV secretion syste 90.0 0.12 4.1E-06 57.4 2.5 24 26-49 175-198 (361)
367 1tev_A UMP-CMP kinase; ploop, 89.8 0.18 6.1E-06 49.6 3.5 25 27-51 4-28 (196)
368 2pt7_A CAG-ALFA; ATPase, prote 89.8 0.12 3.9E-06 56.8 2.2 23 27-49 172-194 (330)
369 1qhx_A CPT, protein (chloramph 89.8 0.16 5.6E-06 49.4 3.1 23 27-49 4-26 (178)
370 3nh6_A ATP-binding cassette SU 89.7 0.089 3E-06 57.1 1.2 22 28-49 82-103 (306)
371 1aky_A Adenylate kinase; ATP:A 89.6 0.17 6E-06 51.4 3.3 26 25-50 3-28 (220)
372 4e22_A Cytidylate kinase; P-lo 89.6 0.18 6.3E-06 52.8 3.5 27 25-51 26-52 (252)
373 2pjz_A Hypothetical protein ST 89.6 0.13 4.5E-06 54.5 2.4 22 28-49 32-53 (263)
374 3tui_C Methionine import ATP-b 89.6 0.14 4.8E-06 56.9 2.7 21 29-49 57-77 (366)
375 1ukz_A Uridylate kinase; trans 89.6 0.23 7.8E-06 49.6 4.1 27 25-51 14-40 (203)
376 1jbk_A CLPB protein; beta barr 89.5 0.34 1.2E-05 46.8 5.2 26 24-49 41-66 (195)
377 1y63_A LMAJ004144AAA protein; 89.5 0.19 6.4E-06 49.8 3.4 25 25-49 9-33 (184)
378 2kjq_A DNAA-related protein; s 89.5 0.16 5.4E-06 48.9 2.7 25 25-49 35-59 (149)
379 2c95_A Adenylate kinase 1; tra 89.5 0.2 6.9E-06 49.4 3.6 24 26-49 9-32 (196)
380 2ph1_A Nucleotide-binding prot 89.5 0.63 2.2E-05 48.7 7.6 68 249-323 127-194 (262)
381 1uf9_A TT1252 protein; P-loop, 89.5 0.2 6.9E-06 49.8 3.6 25 25-49 7-31 (203)
382 3jvv_A Twitching mobility prot 89.5 0.17 5.8E-06 56.1 3.2 22 28-49 125-146 (356)
383 1hyq_A MIND, cell division inh 89.3 0.64 2.2E-05 48.4 7.5 66 250-324 110-175 (263)
384 2cdn_A Adenylate kinase; phosp 89.3 0.22 7.5E-06 49.8 3.7 26 24-49 18-43 (201)
385 1e4v_A Adenylate kinase; trans 89.3 0.19 6.6E-06 50.8 3.3 23 28-50 2-24 (214)
386 2w58_A DNAI, primosome compone 89.3 0.38 1.3E-05 48.0 5.4 39 11-49 39-77 (202)
387 1lw7_A Transcriptional regulat 89.3 0.14 4.9E-06 56.6 2.5 46 4-49 144-193 (365)
388 2p5t_B PEZT; postsegregational 89.2 0.21 7.2E-06 52.3 3.6 27 23-49 29-55 (253)
389 2v54_A DTMP kinase, thymidylat 89.2 0.19 6.4E-06 50.1 3.1 24 26-49 4-27 (204)
390 2plr_A DTMP kinase, probable t 89.1 0.22 7.7E-06 49.7 3.6 23 27-49 5-27 (213)
391 3kta_A Chromosome segregation 89.1 0.2 6.7E-06 49.2 3.1 22 28-49 28-49 (182)
392 2pez_A Bifunctional 3'-phospho 89.0 0.21 7.2E-06 49.0 3.2 25 25-49 4-28 (179)
393 2wwf_A Thymidilate kinase, put 89.0 0.22 7.5E-06 49.9 3.4 25 25-49 9-33 (212)
394 1qf9_A UMP/CMP kinase, protein 88.9 0.29 9.8E-06 48.0 4.2 23 27-49 7-29 (194)
395 1via_A Shikimate kinase; struc 88.9 0.18 6.2E-06 49.2 2.7 22 28-49 6-27 (175)
396 2ewv_A Twitching motility prot 88.9 0.19 6.4E-06 56.0 3.1 26 24-49 134-159 (372)
397 1m7g_A Adenylylsulfate kinase; 88.8 0.25 8.6E-06 49.9 3.8 27 23-49 22-48 (211)
398 3fvq_A Fe(3+) IONS import ATP- 88.8 0.18 6.2E-06 55.9 2.9 22 28-49 32-53 (359)
399 1zd8_A GTP:AMP phosphotransfer 88.8 0.23 7.7E-06 50.8 3.4 24 27-50 8-31 (227)
400 1gtv_A TMK, thymidylate kinase 88.7 0.11 3.8E-06 52.2 1.1 22 28-49 2-23 (214)
401 1nn5_A Similar to deoxythymidy 88.7 0.22 7.5E-06 50.0 3.2 25 25-49 8-32 (215)
402 1xjc_A MOBB protein homolog; s 88.7 0.21 7.2E-06 49.4 3.0 23 27-49 5-27 (169)
403 2bwj_A Adenylate kinase 5; pho 88.6 0.24 8.2E-06 49.0 3.4 24 27-50 13-36 (199)
404 1rj9_A FTSY, signal recognitio 88.5 0.2 7E-06 54.2 2.9 24 26-49 102-125 (304)
405 2pt5_A Shikimate kinase, SK; a 88.3 0.25 8.4E-06 47.6 3.2 22 28-49 2-23 (168)
406 3sr0_A Adenylate kinase; phosp 88.3 0.24 8.1E-06 50.5 3.2 24 28-51 2-25 (206)
407 2pbr_A DTMP kinase, thymidylat 88.3 0.22 7.6E-06 49.0 2.9 22 28-49 2-23 (195)
408 4ido_A Atlastin-1; GTPase, GTP 88.3 3.3 0.00011 47.1 12.8 25 25-49 66-90 (457)
409 2w0m_A SSO2452; RECA, SSPF, un 88.3 0.23 7.7E-06 50.3 3.0 23 27-49 24-46 (235)
410 1z47_A CYSA, putative ABC-tran 88.2 0.2 6.8E-06 55.5 2.7 22 28-49 43-64 (355)
411 3kjh_A CO dehydrogenase/acetyl 88.2 0.29 1E-05 50.1 3.9 66 249-323 130-195 (254)
412 2yyz_A Sugar ABC transporter, 88.2 0.2 6.9E-06 55.5 2.7 22 28-49 31-52 (359)
413 1nij_A Hypothetical protein YJ 88.1 0.21 7.2E-06 54.3 2.8 22 28-49 6-27 (318)
414 3iij_A Coilin-interacting nucl 88.0 0.22 7.6E-06 48.7 2.7 24 26-49 11-34 (180)
415 3rlf_A Maltose/maltodextrin im 88.0 0.21 7.2E-06 55.8 2.7 22 28-49 31-52 (381)
416 2ga8_A Hypothetical 39.9 kDa p 88.0 0.5 1.7E-05 52.2 5.7 40 10-49 8-47 (359)
417 2it1_A 362AA long hypothetical 87.9 0.21 7.3E-06 55.4 2.7 22 28-49 31-52 (362)
418 1p9r_A General secretion pathw 87.9 0.23 7.8E-06 56.3 3.0 23 27-49 168-190 (418)
419 1vht_A Dephospho-COA kinase; s 87.9 0.28 9.5E-06 49.7 3.4 23 26-48 4-26 (218)
420 1g29_1 MALK, maltose transport 87.9 0.21 7.3E-06 55.6 2.7 22 28-49 31-52 (372)
421 1g3q_A MIND ATPase, cell divis 87.9 0.47 1.6E-05 48.4 5.1 66 250-324 111-176 (237)
422 2z0h_A DTMP kinase, thymidylat 87.8 0.23 7.8E-06 49.1 2.6 22 28-49 2-23 (197)
423 3b9q_A Chloroplast SRP recepto 87.8 0.24 8.2E-06 53.6 3.0 23 27-49 101-123 (302)
424 2vp4_A Deoxynucleoside kinase; 87.8 0.24 8.3E-06 50.9 2.9 26 24-49 18-43 (230)
425 1uj2_A Uridine-cytidine kinase 87.7 0.31 1.1E-05 50.8 3.7 28 24-51 20-47 (252)
426 1zak_A Adenylate kinase; ATP:A 87.6 0.26 9E-06 50.1 3.0 25 27-51 6-30 (222)
427 1v43_A Sugar-binding transport 87.6 0.23 7.8E-06 55.4 2.7 22 28-49 39-60 (372)
428 1fnn_A CDC6P, cell division co 87.6 0.42 1.4E-05 52.4 4.8 42 8-49 24-67 (389)
429 1zuh_A Shikimate kinase; alpha 87.5 0.3 1E-05 47.2 3.2 23 27-49 8-30 (168)
430 2npi_A Protein CLP1; CLP1-PCF1 87.4 0.26 8.9E-06 56.5 3.1 25 25-49 137-161 (460)
431 2p65_A Hypothetical protein PF 87.4 0.43 1.5E-05 46.1 4.3 26 24-49 41-66 (187)
432 2xb4_A Adenylate kinase; ATP-b 87.3 0.3 1E-05 50.0 3.2 22 28-49 2-23 (223)
433 3cwq_A Para family chromosome 87.3 0.9 3.1E-05 45.9 6.8 65 250-324 67-133 (209)
434 1cr0_A DNA primase/helicase; R 87.1 0.29 1E-05 52.2 3.1 22 28-49 37-58 (296)
435 3gd7_A Fusion complex of cysti 87.0 0.27 9.2E-06 55.2 2.9 21 28-48 49-69 (390)
436 1e6c_A Shikimate kinase; phosp 86.9 0.31 1.1E-05 47.1 2.9 22 28-49 4-25 (173)
437 3bos_A Putative DNA replicatio 86.8 0.47 1.6E-05 48.0 4.4 25 25-49 51-75 (242)
438 2iyv_A Shikimate kinase, SK; t 86.8 0.32 1.1E-05 47.7 3.0 22 28-49 4-25 (184)
439 3be4_A Adenylate kinase; malar 86.7 0.35 1.2E-05 49.1 3.3 23 27-49 6-28 (217)
440 3d31_A Sulfate/molybdate ABC t 86.7 0.19 6.5E-06 55.5 1.4 22 28-49 28-49 (348)
441 2vli_A Antibiotic resistance p 86.6 0.29 1E-05 47.7 2.6 23 27-49 6-28 (183)
442 2ze6_A Isopentenyl transferase 86.5 0.33 1.1E-05 50.9 3.0 22 28-49 3-24 (253)
443 1f2t_A RAD50 ABC-ATPase; DNA d 86.3 0.35 1.2E-05 46.4 2.9 23 26-49 24-46 (149)
444 2cvh_A DNA repair and recombin 86.3 0.34 1.2E-05 48.7 2.9 22 27-48 21-42 (220)
445 2x8a_A Nuclear valosin-contain 86.2 0.35 1.2E-05 51.4 3.1 22 28-49 46-67 (274)
446 3nwj_A ATSK2; P loop, shikimat 86.2 0.32 1.1E-05 51.1 2.7 25 26-50 48-72 (250)
447 2qby_A CDC6 homolog 1, cell di 86.2 0.39 1.3E-05 52.4 3.6 41 9-49 28-68 (386)
448 1ak2_A Adenylate kinase isoenz 86.0 0.41 1.4E-05 49.2 3.4 25 26-50 16-40 (233)
449 3r20_A Cytidylate kinase; stru 85.9 0.39 1.3E-05 49.9 3.2 27 25-51 8-34 (233)
450 2qby_B CDC6 homolog 3, cell di 85.9 0.78 2.7E-05 50.3 5.9 42 8-49 27-68 (384)
451 2f6r_A COA synthase, bifunctio 85.9 0.45 1.6E-05 50.7 3.8 23 25-47 74-96 (281)
452 1lv7_A FTSH; alpha/beta domain 85.8 0.62 2.1E-05 48.4 4.8 24 26-49 45-68 (257)
453 1ixz_A ATP-dependent metallopr 85.7 0.39 1.3E-05 49.9 3.1 22 28-49 51-72 (254)
454 2og2_A Putative signal recogni 85.7 0.36 1.2E-05 53.5 3.0 23 27-49 158-180 (359)
455 3euj_A Chromosome partition pr 85.6 0.35 1.2E-05 55.7 2.9 23 27-49 30-52 (483)
456 1oxx_K GLCV, glucose, ABC tran 85.6 0.19 6.5E-06 55.6 0.7 22 28-49 33-54 (353)
457 1n0w_A DNA repair protein RAD5 85.3 0.4 1.4E-05 49.0 2.9 23 27-49 25-47 (243)
458 4eaq_A DTMP kinase, thymidylat 85.3 0.56 1.9E-05 48.4 4.0 26 24-49 24-49 (229)
459 3a4m_A L-seryl-tRNA(SEC) kinas 85.3 0.36 1.2E-05 50.7 2.6 23 27-49 5-27 (260)
460 3b60_A Lipid A export ATP-bind 84.9 0.37 1.3E-05 56.9 2.8 22 28-49 371-392 (582)
461 2obl_A ESCN; ATPase, hydrolase 84.8 0.46 1.6E-05 52.4 3.3 23 27-49 72-94 (347)
462 1njg_A DNA polymerase III subu 84.8 1 3.6E-05 44.9 5.8 38 9-49 31-68 (250)
463 3ozx_A RNAse L inhibitor; ATP 84.7 0.35 1.2E-05 56.6 2.4 25 25-49 24-48 (538)
464 3b5x_A Lipid A export ATP-bind 84.4 0.41 1.4E-05 56.5 2.8 22 28-49 371-392 (582)
465 3qf7_A RAD50; ABC-ATPase, ATPa 84.4 0.44 1.5E-05 52.8 2.9 23 26-49 24-46 (365)
466 2grj_A Dephospho-COA kinase; T 84.3 0.51 1.7E-05 47.5 3.1 25 25-49 11-35 (192)
467 1yqt_A RNAse L inhibitor; ATP- 84.3 0.43 1.5E-05 55.8 2.9 23 27-49 48-70 (538)
468 1in4_A RUVB, holliday junction 84.2 0.42 1.4E-05 52.1 2.6 24 27-50 52-75 (334)
469 1q3t_A Cytidylate kinase; nucl 84.1 0.57 1.9E-05 48.2 3.4 28 24-51 14-41 (236)
470 3n70_A Transport activator; si 84.0 0.81 2.8E-05 43.3 4.3 39 9-49 9-47 (145)
471 3la6_A Tyrosine-protein kinase 84.0 1.2 4.2E-05 47.5 6.2 67 250-324 201-267 (286)
472 1iy2_A ATP-dependent metallopr 83.9 0.51 1.8E-05 49.8 3.1 22 28-49 75-96 (278)
473 2yl4_A ATP-binding cassette SU 83.8 0.38 1.3E-05 56.9 2.2 22 28-49 372-393 (595)
474 3qf4_B Uncharacterized ABC tra 83.7 0.4 1.4E-05 56.8 2.4 22 28-49 383-404 (598)
475 3bfv_A CAPA1, CAPB2, membrane 83.6 1.6 5.6E-05 46.0 6.9 67 250-324 191-257 (271)
476 1tue_A Replication protein E1; 83.5 0.83 2.8E-05 46.6 4.3 37 10-49 45-81 (212)
477 4a82_A Cystic fibrosis transme 83.5 0.35 1.2E-05 57.1 1.7 22 28-49 369-390 (578)
478 1nlf_A Regulatory protein REPA 83.5 0.55 1.9E-05 49.6 3.1 22 28-49 32-53 (279)
479 2chg_A Replication factor C sm 83.4 0.74 2.5E-05 45.5 3.9 37 9-49 25-61 (226)
480 3co5_A Putative two-component 83.4 0.74 2.5E-05 43.5 3.7 37 9-47 12-48 (143)
481 2v1u_A Cell division control p 83.3 0.6 2.1E-05 51.0 3.5 42 8-49 26-67 (387)
482 3umf_A Adenylate kinase; rossm 83.3 0.8 2.7E-05 47.0 4.1 25 27-51 30-54 (217)
483 3vqt_A RF-3, peptide chain rel 83.2 0.058 2E-06 63.4 -5.1 130 25-178 30-165 (548)
484 3j25_A Tetracycline resistance 83.2 0.11 3.6E-06 62.3 -2.9 125 26-178 2-132 (638)
485 3te6_A Regulatory protein SIR3 83.1 0.68 2.3E-05 50.4 3.7 42 8-49 27-68 (318)
486 3j16_B RLI1P; ribosome recycli 83.0 0.49 1.7E-05 56.1 2.7 22 28-49 105-126 (608)
487 1wcv_1 SOJ, segregation protei 82.9 4.4 0.00015 41.9 9.8 67 249-324 110-182 (257)
488 3h4m_A Proteasome-activating n 82.9 0.91 3.1E-05 47.7 4.5 26 24-49 49-74 (285)
489 3ake_A Cytidylate kinase; CMP 82.9 0.66 2.2E-05 46.1 3.2 23 28-50 4-26 (208)
490 3gmt_A Adenylate kinase; ssgci 82.6 0.67 2.3E-05 48.1 3.2 25 26-50 8-32 (230)
491 2dpy_A FLII, flagellum-specifi 82.5 0.64 2.2E-05 52.9 3.3 25 25-49 156-180 (438)
492 1svm_A Large T antigen; AAA+ f 82.5 0.72 2.5E-05 51.4 3.6 27 23-49 166-192 (377)
493 2px0_A Flagellar biosynthesis 82.2 0.7 2.4E-05 49.7 3.3 24 26-49 105-128 (296)
494 3qf4_A ABC transporter, ATP-bi 82.2 0.42 1.4E-05 56.5 1.7 22 28-49 371-392 (587)
495 2qz4_A Paraplegin; AAA+, SPG7, 82.0 1.1 3.9E-05 46.1 4.8 25 25-49 38-62 (262)
496 2dr3_A UPF0273 protein PH0284; 82.0 0.7 2.4E-05 47.1 3.1 22 28-49 25-46 (247)
497 1yqt_A RNAse L inhibitor; ATP- 82.0 0.57 1.9E-05 54.8 2.7 22 28-49 314-335 (538)
498 1zu4_A FTSY; GTPase, signal re 81.9 2.1 7.3E-05 46.5 7.1 24 26-49 105-128 (320)
499 1ltq_A Polynucleotide kinase; 81.8 0.6 2.1E-05 49.7 2.6 22 27-48 3-24 (301)
500 3ozx_A RNAse L inhibitor; ATP 81.6 0.55 1.9E-05 54.9 2.4 22 28-49 296-317 (538)
No 1
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...
Probab=100.00 E-value=4.1e-120 Score=1066.14 Aligned_cols=424 Identities=39% Similarity=0.664 Sum_probs=400.4
Q ss_pred eeccccCCCCCCCCcccce-eee--eeecccCCcccccc-eecchhhhhhhheecccCceeeEEEEEeeccCCCCCCCCC
Q psy15197 477 VGFLLSELSHPCPVSSKFE-ARI--VVFNITTPITIGYP-VTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTN 552 (902)
Q Consensus 477 kG~vL~~~~~~~~~~~~F~-a~i--rvvHakg~ga~G~f-v~~~is~~~~A~if~~~gk~tpv~vRFS~~~g~~~~~D~~ 552 (902)
+|.+|....++...-..|. +|| |++||||.|++||| ++++++.+|+|++|+.+|++|||++||||++|++|++|++
T Consensus 100 rGp~llqD~~l~eklahFdrErIPER~vHAKG~gA~G~F~vt~d~s~~t~A~~F~~~Gk~tPv~vRFStv~G~~gs~Dt~ 179 (753)
T 3ttv_A 100 RGPTLLEDFILREKIAHFDHERIPERIVHARGSAAHGYFQPYKSLSDITKADFLSDPNKITPVFVRFSTVQGGAGSADTV 179 (753)
T ss_dssp TSCBBTTCHHHHHHHHHHHTCCCCCCSSCCSEEEEEEEEEESSCCTTTCCCGGGSCTTCCEEEEEEEECSSSCTTSCTTS
T ss_pred CCccHHHHHHHHHHHHHhcccCCCccccCCCcceEEEEEEECCchhHHHhhhhhcCCCceeEEEEEecCCCCCCCCCccC
Confidence 5667776666555556675 677 99999999999999 9999999999999999999999999999999999999999
Q ss_pred CCcccceeEEEccCCceeeeccccceeccCChHHHHHHHhhccCCCCCCCCCc----hhHHHHHhcCchhHHHHHHHhcC
Q psy15197 553 RDPRGFALKFYTEDGNWDLVGNNTPIFFVRDPFRFIHFIHSQKRNPVTHLRDW----DAFWDFISLLPETTHQVMILFSD 628 (902)
Q Consensus 553 ~d~RG~AiKf~~~eG~~D~v~~n~PvFf~rd~~~F~~~i~a~~~~p~~~~~~~----~~~~~f~~~~pe~~~~~~~~~s~ 628 (902)
||+|||||||||+||||||||||+||||+|||++||+|+|++|++|.|+++++ +++|||++.+||++||++|+||+
T Consensus 180 rD~RGfAvKFyt~eGn~DlVgnN~PVFFirDp~kFpdfiha~k~~P~t~~~~~~~~~~~~wdF~s~~PEs~h~~~~l~sd 259 (753)
T 3ttv_A 180 RDIRGFATKFYTEEGIFDLVGNNTPIFFIQDAHKFPDFVHAVKPEPHWAIPQGQSAHDTFWDYVSLQPETLHNVMWAMSD 259 (753)
T ss_dssp SSCCEEEEEEEETTEEEEEEEESSSSCSCSCGGGHHHHHHHHSCCTTTCCCTTCCCSHHHHHHHHHCGGGHHHHHHHHSG
T ss_pred CCCCcEEEEEEcCCCCcccccccCCccccCCHHHHHHHHHHhhcCCccCCCCcccchHHHHHHHHhCHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999974 79999999999999999999999
Q ss_pred CCCCCCcCcccccccceEEEEeCCCCeEEEEEEEEeCCCCCCCCHHHHHHhhCCCCChhHHHHHHHHhcCCCceEEEEEE
Q psy15197 629 RGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLYDNIAKGNFPSWTFYIQ 708 (902)
Q Consensus 629 ~~~p~s~~~~~~~s~~tf~~~n~~G~~~~vk~~~~p~~g~~~l~~~ea~~~~~~~~d~l~~dL~~~i~~g~~p~w~l~vQ 708 (902)
||+|+||++|+|||+|||+|+|++|+++||||||+|.+|+++|+++||.++++.+||||++||+++|++|++|+|+|+||
T Consensus 260 rg~P~Syr~m~g~g~htf~~vn~~G~~~~VKfh~~p~~G~~~l~~~EA~~~~g~dpD~l~~DL~~~I~~G~~p~w~l~vQ 339 (753)
T 3ttv_A 260 RGIPRSYRTMEGFGIHTFRLINAEGKATFVRFHWKPLAGKASLVWDEAQKLTGRDPDFHRRELWEAIEAGDFPEYELGFQ 339 (753)
T ss_dssp GGSBSCGGGSCEECCSCEEEECTTCCEEEEEEEEEETTCCCBCCHHHHHHHHHHCTTHHHHHHHHHHHHTCCCEEEEEEE
T ss_pred CCCCCCcccCCcccccceEEEcCCCCEEEEEEEEEECCCCCCCCHHHHHHhhCCCchHHHHHHHHHHhcCCCCeEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCcchhccCCCCCCCCccccCCCCCCcEeeEEEEecCCCCCchhhhcccccCCCCCCCcccCCCCchhhhhhhhhHHHh
Q psy15197 709 VMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNYYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTH 788 (902)
Q Consensus 709 ~~~~~d~~~~~~~i~D~Tk~Wpe~~~p~~~vG~l~l~~~~~~~~~~~eq~aF~P~~~v~Gi~~s~Dp~lq~R~~aY~~s~ 788 (902)
+|+++|+.+|+|||+|+||+|||+++|+++||+|+||+||+|||++|||+||+|||+||||+||+|||||+|+|||+|||
T Consensus 340 v~~~~d~~~~~f~~~D~TK~WPe~~~Pl~~VG~l~Lnrnp~n~fae~Eq~aF~P~~lvpGI~~S~DplLq~R~fsY~dtq 419 (753)
T 3ttv_A 340 LIPEEDEFKFDFDLLDPTKLIPEELVPVQRVGKMVLNRNPDNFFAENEQAAFHPGHIVPGLDFTNDPLLQGRLYSYTDTQ 419 (753)
T ss_dssp EEEGGGTTCSSSCTTCTTSCCCTTTSCCEEEEEEEEEECCSCHHHHTTTCCCCTTCCCTTEECCCCHHHHHHHHHHHHHH
T ss_pred eechhhhhcCCCCCccCCccCCCcCccceeeeEEEecCCCcchhhhhhcceeccccccCCcCCCCCcHhhhhhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhc-CCCCCCCCCCCCCCccCCCcCCCCCccccCCCCCCccccCCCCC--CCCCC------CCCCCCcceeeeEEeecc
Q psy15197 789 IHRL-GANFNQIPVNCPYRVRVANYQRDAPMAIDNQNGAPNYYPNSFKG--PEPTP------RGAWSTYNATGDVKRYKT 859 (902)
Q Consensus 789 ~~R~-g~N~~qlpvN~p~~~~~~~~~rdG~m~~~~~~~~~nY~pns~~~--~~~~~------~~~~~~~~~~g~~~~~~~ 859 (902)
+||| |+||+|||||||+|+ |+||||||+|++.|+++.|||+||||++ |.+.+ .+..++.++.|.+.|+.+
T Consensus 420 r~RlgG~N~~qlPvN~p~~~-~~~~~rDG~m~~~~~~~~~~Y~pns~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 498 (753)
T 3ttv_A 420 ISRLGGPNFHEIPINRPTCP-YHNFQRDGMHRMGIDTNPANYEPNSINDNWPRETPPGPKRGGFESYQERVEGNKVRERS 498 (753)
T ss_dssp HHHHTSTTGGGSGGGCCSSC-CCCSCCCCTTCCCEECCSCSSSSCSTTTTCSBCCCCCSSSCCBCCCCCEEEEEEEECCC
T ss_pred HHhccCCCcccCCCCCCCCc-ccCccccccccccCCCCCCceeCCCCCCCCcccCcccccccccccCCcccccceEeecc
Confidence 9999 999999999999996 9999999999998889999999999985 44333 345567789999999876
Q ss_pred C-CCCCccchHHHHhhcCCHHHHHHHHHHHHHHhcCCC-hhhhcC
Q psy15197 860 E-DEDNFSQPRILWSNVLDDAARDRMTTNIASVLKLAA-PFIQIL 902 (902)
Q Consensus 860 ~-~~ddf~Q~~~~~~~~~~~~ek~~li~n~~~~l~~~~-~~I~~~ 902 (902)
. ++|||+|||+||+ +|++.||+|||+|++++|++|. ++||+|
T Consensus 499 ~~~~d~f~Q~~~~~~-~~~~~~~~~l~~n~~~~l~~~~~~~i~~r 542 (753)
T 3ttv_A 499 PSFGEYYSHPRLFWL-SQTPFEQRHIVDGFSFELSKVVRPYIRER 542 (753)
T ss_dssp GGGCCCSHHHHHHHH-HSCHHHHHHHHHHHHHHHHTCSSHHHHHH
T ss_pred cCccchhHHHHHHHH-hCCHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 5 6899999999998 8999999999999999999995 679875
No 2
>2isa_A Catalase; peroxidase, heme, oxidoreductase, iron, hydrogen peroxide; HET: OMT HEM; 1.97A {Vibrio salmonicida} PDB: 1m85_A* 1mqf_A* 1nm0_A* 2cag_A* 2cah_A* 1e93_A* 1h7k_A* 1h6n_A* 3hb6_A*
Probab=100.00 E-value=1.3e-119 Score=1026.51 Aligned_cols=424 Identities=46% Similarity=0.761 Sum_probs=403.1
Q ss_pred eeccccCCCCCCCCcccce-eee--eeecccCCcccccc-eecchhhhhhhheecccCceeeEEEEEeeccCCCCCCCCC
Q psy15197 477 VGFLLSELSHPCPVSSKFE-ARI--VVFNITTPITIGYP-VTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTN 552 (902)
Q Consensus 477 kG~vL~~~~~~~~~~~~F~-a~i--rvvHakg~ga~G~f-v~~~is~~~~A~if~~~gk~tpv~vRFS~~~g~~~~~D~~ 552 (902)
+|.+|....+....-..|. .++ |++||||.|++|+| ++++++.+|+|++|+.+|++|||++||||++|++|++|++
T Consensus 25 ~Gp~ll~d~~l~ekl~~f~~eripeR~vHAKG~ga~G~F~vt~di~~~t~a~~F~~~Gk~tpv~vRFStv~G~~gs~Dt~ 104 (483)
T 2isa_A 25 RGPQLLQDVWFLEKLAHFDREVIPERRMHAKGSGAYGTFTVTHDITKYTKAKIFSDIGKKTDMFARFSTVAGERGAADAE 104 (483)
T ss_dssp TSCBBTTCHHHHHHHHHHTTCCCCCCSSCCSEEEEEEEEEECSCCTTTCCCGGGSSTTCEEEEEEEEECSSCCTTSCSSC
T ss_pred CCCcccccHHHHHHHHHhcCCCCCcccccCCccEEEEEEEECCCchHhhhchhccCCCceeeEEEEeecCCCCCCCCCcC
Confidence 4566665544443334454 344 89999999999999 9999999999999999999999999999999999999999
Q ss_pred CCcccceeEEEccCCceeeeccccceeccCChHHHHHHHhhccCCCCCCCCCchhHHHHHhcCchhHHHHHHHhcCCCCC
Q psy15197 553 RDPRGFALKFYTEDGNWDLVGNNTPIFFVRDPFRFIHFIHSQKRNPVTHLRDWDAFWDFISLLPETTHQVMILFSDRGIP 632 (902)
Q Consensus 553 ~d~RG~AiKf~~~eG~~D~v~~n~PvFf~rd~~~F~~~i~a~~~~p~~~~~~~~~~~~f~~~~pe~~~~~~~~~s~~~~p 632 (902)
||+|||||||||+||||||||||+||||+|||++|++|+|++|++|.+++++++++|||++++||++|+++|+|++||+|
T Consensus 105 rD~RGfAvKfyt~eGn~DlV~nN~PVFfirD~~kFpd~i~a~k~~p~t~~~d~~~~~df~s~~Pes~h~~~~l~sdrg~P 184 (483)
T 2isa_A 105 RDIRGFSLKFYTEEGNWDLAGNNTPVFFLRDPLKFPDLNHAVKRDPRTNMRSAKNNWDFWTSLPEALHQVTIVMSDRGIP 184 (483)
T ss_dssp SSCCEEEEEEEETTEEEEEEEESSSCCSCSSGGGHHHHHHHHSBCTTTCSBCHHHHHHHHHTCGGGHHHHHHHHSGGGSB
T ss_pred CCcCceEEEEecCCCccceeeeCCCccccCCHHHHHHHHHhcCCCCcCCCCCHHHHHHHHHhChhHhhHHHHhhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCcccccccceEEEEeCCCCeEEEEEEEEeCCCCCCCCHHHHHHhhCCCCChhHHHHHHHHhcCCCceEEEEEEEeCc
Q psy15197 633 DGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLYDNIAKGNFPSWTFYIQVMTF 712 (902)
Q Consensus 633 ~s~~~~~~~s~~tf~~~n~~G~~~~vk~~~~p~~g~~~l~~~ea~~~~~~~~d~l~~dL~~~i~~g~~p~w~l~vQ~~~~ 712 (902)
+||++|+|||+|||+|+|++|+.+||||||+|.+|+++|+++||.++++.++||+++||+++|++|++|+|+|+||+|++
T Consensus 185 ~s~r~m~g~g~htf~~vn~~G~~~~VK~h~~P~~Gv~~L~~~ea~~~~g~d~d~~~~dL~~aI~~g~~p~w~l~vQl~~~ 264 (483)
T 2isa_A 185 ATYRHMHGFGSHTFSFINSDNERYWVKFHFVSQQGIKNLSDAEAGELVGNDRESHQRDLLDSIDNQDFPKWTLKVQIMPE 264 (483)
T ss_dssp SSGGGSCEECCSCEEEECTTCCEEEEEEEEEESSCCCBCCHHHHHHHHHHCTTHHHHHHHHHHHTTCCCEEEEEEEEEEG
T ss_pred CCcccccccccCceeEEcCCCCEEEEEEEEEeCCCCCCCCHHHHHHhcCCChhHHHHHHHHHHHcCCCceEEEEEEeeCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhccCCCCCCCCccccCCCCCCcEeeEEEEecCCCCCchhhhcccccCCCCCCCcccCCCCchhhhhhhhhHHHhhhhc
Q psy15197 713 EEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNYYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRL 792 (902)
Q Consensus 713 ~d~~~~~~~i~D~Tk~Wpe~~~p~~~vG~l~l~~~~~~~~~~~eq~aF~P~~~v~Gi~~s~Dp~lq~R~~aY~~s~~~R~ 792 (902)
+|+.+|+|||+|+||+|||+++|+++||+|+||+|++|+|++|||+||+|||+||||+||+|||||+|+|||+|||++|+
T Consensus 265 ~d~~~~~~~~~D~Tk~Wpe~~~P~i~VG~l~Lnrnp~n~fae~Eq~aF~P~~~vpGI~pS~D~lLq~R~faY~ds~r~Rl 344 (483)
T 2isa_A 265 ADAATVPYNPFDLTKVWPHKDYPLIEVGEFELNRNPQNYFAEVEQAAFNPANVVPGISFSPDKMLQGRLFAYGDAQRYRL 344 (483)
T ss_dssp GGGGTSSSCTTCTTCCCCTTTSCCEEEEEEEEEECCSCHHHHTTTCCCCTTCCCTTEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcCCCCCCCCCccCCcccCCceEEEEEEecCCCccchhhhhhhhcCcccCCCCcccCCChHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCccCCCcCCCCCccc-cCCCCCCccccCCCCCCCCCCCCCCCCcceeeeEEeeccC-CCCCccchHH
Q psy15197 793 GANFNQIPVNCPYRVRVANYQRDAPMAI-DNQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKRYKTE-DEDNFSQPRI 870 (902)
Q Consensus 793 g~N~~qlpvN~p~~~~~~~~~rdG~m~~-~~~~~~~nY~pns~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~ddf~Q~~~ 870 (902)
|+||+|||||||+|+ |+||||||+|++ .|+++.|||+|||++++...+.+.+++..++|.+.++.+. ++|||+|||+
T Consensus 345 g~N~~qlPvN~P~~~-~~~~~rdG~m~~~~~~~~~~~y~pn~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~q~~~ 423 (483)
T 2isa_A 345 GVNHQHIPVNAPRCP-VHSYHRDGAMRVDGNFGSTLGYEPNDQGQWAEQPDFSEPPLNLDGAAAHWDHREDEDYFSQPGD 423 (483)
T ss_dssp CTTGGGSGGGSCSSC-CCCCCCCCSSCCSCTTTTCCCCSSCTTCTTBCCGGGCCCCBCCCSCEECCCGGGCCCCSHHHHH
T ss_pred cCcccccccCCCCcc-ccCcccccccccccCCCCcccCCCCcCCCccCCCCCCCCccccccceEeecccCCcchhhhHHH
Confidence 999999999999996 999999999999 5779999999999998877777778888889999999876 7899999999
Q ss_pred HHhhcCCHHHHHHHHHHHHHHhcCCChhhhcC
Q psy15197 871 LWSNVLDDAARDRMTTNIASVLKLAAPFIQIL 902 (902)
Q Consensus 871 ~~~~~~~~~ek~~li~n~~~~l~~~~~~I~~~ 902 (902)
||+ +|++.||+|||+|++++|++|+++||+|
T Consensus 424 ~~~-~~~~~~~~~l~~~~~~~l~~~~~~i~~~ 454 (483)
T 2isa_A 424 LFG-LMTAEKQAILFDNTARNLNGVPKEIQLR 454 (483)
T ss_dssp HHH-HSCHHHHHHHHHHHHHHTTTSCHHHHHH
T ss_pred HHH-cCCHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 998 8999999999999999999999889875
No 3
>1m7s_A Catalase; beta barrel, alpha helical domain, oxidoreductase; HET: HEM; 1.80A {Pseudomonas syringae} SCOP: e.5.1.1
Probab=100.00 E-value=1.4e-119 Score=1024.80 Aligned_cols=421 Identities=38% Similarity=0.656 Sum_probs=400.7
Q ss_pred eeccccCCCCCCCCcccce-eee--eeecccCCcccccc-eecchhhhhhhheecccCceeeEEEEEeeccCCCCCCCCC
Q psy15197 477 VGFLLSELSHPCPVSSKFE-ARI--VVFNITTPITIGYP-VTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTN 552 (902)
Q Consensus 477 kG~vL~~~~~~~~~~~~F~-a~i--rvvHakg~ga~G~f-v~~~is~~~~A~if~~~gk~tpv~vRFS~~~g~~~~~D~~ 552 (902)
+|.+|....+....-..|. .++ |++||||.|++|+| ++++++.+|+|++| .+|++|||++||||++|++|++|++
T Consensus 24 ~Gp~ll~D~~l~ekl~~f~reripeR~vHAKG~ga~G~F~vt~di~~~t~a~~F-~~Gk~tpv~vRFStv~G~~gs~Dt~ 102 (484)
T 1m7s_A 24 QGPVLLQDVQLLQKLQRFDRERIPERVVHARGTGVKGEFTASADISDLSKATVF-KSGEKTPVFVRFSSVVHGNHSPETL 102 (484)
T ss_dssp TSCBBTTCHHHHHHHHHHTTCCCCCCSSCCSEEEEEEEEEECSCCTTTCCCGGG-STTCEEEEEEEEECSSSCTTCCTTS
T ss_pred CCCcccccHHHHHHHHHhcCCCCCccccCCCcceEEEEEEECCchHHhhhcccc-CCCCeeEEEEEeccCCCCCCCCccc
Confidence 4566665544443333454 444 89999999999999 99999999999999 7899999999999999999999999
Q ss_pred CCcccceeEEEccCCceeeeccccceeccCChHHHHHHHhhccCCCCCCCCCchhHHHHHhcCchhHHHHHHHhcCCCCC
Q psy15197 553 RDPRGFALKFYTEDGNWDLVGNNTPIFFVRDPFRFIHFIHSQKRNPVTHLRDWDAFWDFISLLPETTHQVMILFSDRGIP 632 (902)
Q Consensus 553 ~d~RG~AiKf~~~eG~~D~v~~n~PvFf~rd~~~F~~~i~a~~~~p~~~~~~~~~~~~f~~~~pe~~~~~~~~~s~~~~p 632 (902)
||+|||||||||+||||||||||+||||+|||++|++|+|++|++|.+++++++++|||++.+||++|+++|+||+||+|
T Consensus 103 rD~RGfAvKfyt~eGn~DlVgnN~PVFfirD~~kFpd~i~a~k~~p~t~~~d~~~~~df~s~~Pes~h~~~~l~sdrg~P 182 (484)
T 1m7s_A 103 RDPHGFATKFYTADGNWDLVGNNFPTFFIRDAIKFPDMVHAFKPDPRTNLDNDSRRFDFFSHVPEATRTLTLLYSNEGTP 182 (484)
T ss_dssp CSCCEEEEEEEETTEEEEEEEESSSSCSCSCGGGHHHHHHHHSCCTTTSSCCHHHHHHHHHTCGGGHHHHHHHHSGGGSB
T ss_pred CCcCceEEEEecCCCcceeeecCCCccccCCHHHHHHHHHHhCcCCccCCCCHHHHHHHHHhChhHhhHHHHhhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCcccccccceEEEEeCCCCeEEEEEEEEeCCCCCCCCHHHHHHhhCCCCChhHHHHHHHHhcCCCceEEEEEEEeCc
Q psy15197 633 DGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLYDNIAKGNFPSWTFYIQVMTF 712 (902)
Q Consensus 633 ~s~~~~~~~s~~tf~~~n~~G~~~~vk~~~~p~~g~~~l~~~ea~~~~~~~~d~l~~dL~~~i~~g~~p~w~l~vQ~~~~ 712 (902)
.||++|+|||+|||+|+|++|+.+||||||+|.+|+++|+++||.++++.++|||++||+++|++|++|+|+|+||+|++
T Consensus 183 ~s~r~m~g~g~htf~~vn~~G~~~~VK~h~~P~~Gv~~L~~~ea~~~~g~dpd~l~~DL~~aI~~g~~p~w~l~vQl~~~ 262 (484)
T 1m7s_A 183 AGYRFMDGNGVHAYKLVNAKGEVHYVKFHWKSLQGIKNLDPKEVAQVQSKDYSHLTNDLVGAIKKGDFPKWDLYVQVLKP 262 (484)
T ss_dssp SCGGGSCEECCSCEEEECTTSCEEEEEEEEEETTCCCBCCHHHHHHHHHHCSCHHHHHHHHHHHTTCCCEEEEEEEEECG
T ss_pred CccccccccccCceeeEcCCCCEEEEEEEEEeCCCCCCCCHHHHHHhcCCChhhhHHHHHHHHHcCCCceEEEEEEeecH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhccCCCCCCCCccccCCCCCCcEeeEEEEecCCCCCchhhhcccccCCCCCCCcccCCCCchhhhhhhhhHHHhhhhc
Q psy15197 713 EEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNYYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRL 792 (902)
Q Consensus 713 ~d~~~~~~~i~D~Tk~Wpe~~~p~~~vG~l~l~~~~~~~~~~~eq~aF~P~~~v~Gi~~s~Dp~lq~R~~aY~~s~~~R~ 792 (902)
+|+.+|+|||+|+||+||| +|+++||+|+||+||+|+|++|||+||+|||+||||+||+|||||+|+|||+|||++|+
T Consensus 263 ~d~~~~~~~~~D~Tk~Wpe--~P~i~VG~l~Lnrnp~n~fae~Eq~aF~P~~~vpGI~~S~DplLq~R~fsY~ds~r~Rl 340 (484)
T 1m7s_A 263 EELAKFDFDPLDATKIWPD--VPEKKIGQMVLNKNVDNFFQETEQVAMAPANLVPGIEPSEDRLLQGRVFSYADTQMYRL 340 (484)
T ss_dssp GGGGGSSSCTTCTTCCCSS--SCEEEEEEEEEEEECSCHHHHTTTCCCCTTCCCTTEEECSCHHHHHHHHHHHHHHHHHT
T ss_pred HHhhcCCCCccCCCCcCCC--CCCEEeEEEEECCCcccchhhhhhhcccccccCCccCCCCChHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCccCCCcCCCCCccccCCCCCCccccCCCCCCCCCCCCCCCCcceeeeEEeeccCCCCCccchHHHH
Q psy15197 793 GANFNQIPVNCPYRVRVANYQRDAPMAIDNQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKRYKTEDEDNFSQPRILW 872 (902)
Q Consensus 793 g~N~~qlpvN~p~~~~~~~~~rdG~m~~~~~~~~~nY~pns~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ddf~Q~~~~~ 872 (902)
|+||+|||||||+|+ |+||||||+|+++|+++.|||+|||++++...+.+.+++..++|.+.++.+.++|||+|||+||
T Consensus 341 g~N~~qlPvN~P~~~-~~~~~rdG~m~~~~~~~~~~y~pn~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~q~~~~~ 419 (484)
T 1m7s_A 341 GANGLSLPVNQPKVA-VNNGNQDGALNTGHTTSGVNYEPSRLEPRPADDKARYSELPLSGTTQQAKITREQNFKQAGDLY 419 (484)
T ss_dssp CTTGGGSGGGCCSSC-CCSSCCCCTTCCCCCCCSCCSSSCSSSCCCCCGGGCCCCCBCCSBEECCCCSCCCCSHHHHHHH
T ss_pred cCCcccCCCCCCCCc-ccCccccCcccccCCCCCCCcCCCcCCCCCCCCCCCCCCeecccceeeecCCCcchhhhHHHHH
Confidence 999999999999996 9999999999999889999999999998777777778888899999999877889999999999
Q ss_pred hhcCCHHHHHHHHHHHHHHhcCCChhhhcC
Q psy15197 873 SNVLDDAARDRMTTNIASVLKLAAPFIQIL 902 (902)
Q Consensus 873 ~~~~~~~ek~~li~n~~~~l~~~~~~I~~~ 902 (902)
+ +|++.||+|||+|++++|++|+++||+|
T Consensus 420 ~-~~~~~~~~~l~~n~~~~l~~~~~~i~~~ 448 (484)
T 1m7s_A 420 R-SYSAKEKTDLVQKFGESLADTLTESKNI 448 (484)
T ss_dssp H-HSCHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred H-hCCHHHHHHHHHHHHHHHhccCHHHHHH
Confidence 8 8999999999999999999999889875
No 4
>1dgf_A Catalase; heme, NADPH, hydrogen peroxide, oxidoreductase; HET: HEM NDP; 1.50A {Homo sapiens} SCOP: e.5.1.1 PDB: 1dgg_A* 1f4j_A* 1qqw_A* 1dgh_A* 1dgb_A* 3rgp_A* 3re8_A* 3rgs_A* 3nwl_A* 4blc_A* 1th2_A* 1th3_A* 1th4_A* 1tgu_A* 7cat_A* 8cat_A*
Probab=100.00 E-value=1.7e-119 Score=1027.14 Aligned_cols=425 Identities=61% Similarity=1.050 Sum_probs=403.6
Q ss_pred eeccccCCCCCCCCcccce-eee--eeecccCCcccccc-eecchhhhhhhheecccCceeeEEEEEeeccCCCCCCCCC
Q psy15197 477 VGFLLSELSHPCPVSSKFE-ARI--VVFNITTPITIGYP-VTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTN 552 (902)
Q Consensus 477 kG~vL~~~~~~~~~~~~F~-a~i--rvvHakg~ga~G~f-v~~~is~~~~A~if~~~gk~tpv~vRFS~~~g~~~~~D~~ 552 (902)
+|.+|....+.......|. .++ |++||||.|++|+| ++++++.+|+|++|+.+|++|||++||||++|++|++|++
T Consensus 43 ~Gp~ll~D~~l~ekl~~f~reripeR~vHAKG~ga~G~F~vt~di~~~t~a~~F~~~Gk~tpv~vRFStv~G~~gs~Dt~ 122 (497)
T 1dgf_A 43 RGPLLVQDVVFTDEMAHFDRERIPERVVHAKGAGAFGYFEVTHDITKYSKAKVFEHIGKKTPIAVRFSTVAGESGSADTV 122 (497)
T ss_dssp TSCBBTTCHHHHHHHHHHTTCCCCCCSSCCSEEEEEEEEEECSCCTTTCCCGGGSSTTCEEEEEEEEECSSSCTTSCSSS
T ss_pred CCCcccccHHHHHHHHhhcCCCCCCcccCCCcceeEEEEEECCChhHhhhchhccCCCceeeEEEEeecCCCCCCCCCcC
Confidence 4556655544443334454 444 89999999999999 9999999999999999999999999999999999999999
Q ss_pred CCcccceeEEEccCCceeeeccccceeccCChHHHHHHHhhccCCCCCCCCCchhHHHHHhcCchhHHHHHHHhcCCCCC
Q psy15197 553 RDPRGFALKFYTEDGNWDLVGNNTPIFFVRDPFRFIHFIHSQKRNPVTHLRDWDAFWDFISLLPETTHQVMILFSDRGIP 632 (902)
Q Consensus 553 ~d~RG~AiKf~~~eG~~D~v~~n~PvFf~rd~~~F~~~i~a~~~~p~~~~~~~~~~~~f~~~~pe~~~~~~~~~s~~~~p 632 (902)
||+|||||||||+||||||||||+||||+|||++|++|+|++|++|.|++++++++|||++.+||++|+++|+|++||+|
T Consensus 123 rD~RGfAvKfyt~eGn~DlVgnN~PVFfirD~~kFpd~i~a~k~~p~t~~~d~~~~wdf~s~~PEs~h~~~~l~sdrg~P 202 (497)
T 1dgf_A 123 RDPRGFAVKFYTEDGNWDLVGNNTPIFFIRDPILFPSFIHSQKRNPQTHLKDPDMVWDFWSLRPESLHQVSFLFSDRGIP 202 (497)
T ss_dssp SSCCEEEEEEEETTEEEEEEEESSSSCSCSSGGGHHHHHHHHSBCTTTCSBCHHHHHHHHHHCGGGHHHHHHHTSGGGSB
T ss_pred CCcCceEEEEecCCCceeEeecCCCccccCCHHHHHHHHHhcCCCCcCCCCCHHHHHHHHHhCchhhhHHHHHhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCcccccccceEEEEeCCCCeEEEEEEEEeCCCCCCCCHHHHHHhhCCCCChhHHHHHHHHhcCCCceEEEEEEEeCc
Q psy15197 633 DGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLYDNIAKGNFPSWTFYIQVMTF 712 (902)
Q Consensus 633 ~s~~~~~~~s~~tf~~~n~~G~~~~vk~~~~p~~g~~~l~~~ea~~~~~~~~d~l~~dL~~~i~~g~~p~w~l~vQ~~~~ 712 (902)
.||++|+|||+|||+|+|++|+.+||||||+|.+|+++|+++||.++++.++|||++||+++|++|++|+|+|+||+|++
T Consensus 203 ~s~r~m~g~g~htf~~vn~~G~~~~VKfh~~P~~Gv~~L~~~ea~~~~g~d~d~~~~DL~~aI~~G~~p~w~l~vQl~~~ 282 (497)
T 1dgf_A 203 DGHRHMNGYGSHTFKLVNANGEAVYCKFHYKTDQGIKNLSVEDAARLSQEDPDYGIRDLFNAIATGKYPSWTFYIQVMTF 282 (497)
T ss_dssp SSSTTSCEECCSCEEEECTTSCEEEEEEEEEETTCCCBCCHHHHHHHHHHCTTHHHHHHHHHHHTTCCCEEEEEEEEECH
T ss_pred CCccccccccccceEEEcCCCCEEEEEEEEEeCCCCCCCCHHHHHHhcCCCccHHHHHHHHHHHcCCCceEEEEEEeech
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhccCCCCCCCCccccCCCCCCcEeeEEEEecCCCCCchhhhcccccCCCCCCCcccCCCCchhhhhhhhhHHHhhhhc
Q psy15197 713 EEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNYYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRL 792 (902)
Q Consensus 713 ~d~~~~~~~i~D~Tk~Wpe~~~p~~~vG~l~l~~~~~~~~~~~eq~aF~P~~~v~Gi~~s~Dp~lq~R~~aY~~s~~~R~ 792 (902)
+|+.+|+|||+|+||+|||+++|+++||+|+||+|++|+|++|||+||+|||+||||+||+|||||+|+|||+|||++|+
T Consensus 283 ~d~~~~~~~~~D~Tk~Wpe~~~P~i~VG~l~Lnrnp~n~fae~Eq~aF~P~~~vpGI~pS~D~lLq~R~fsY~ds~r~Rl 362 (497)
T 1dgf_A 283 NQAETFPFNPFDLTKVWPHKDYPLIPVGKLVLNRNPVNYFAEVEQIAFDPSNMPPGIEASPDKMLQGRLFAYPDTHRHRL 362 (497)
T ss_dssp HHHHHCSSCTTCTTCCCCTTTSCCEEEEEEEEEECCSSHHHHTTTCCCCTTCCCTTEEECSCHHHHHHHHHHHHHHHHHT
T ss_pred hhhhcCCCCCCcCceECCcccCCcEEEEEEEecCCCcccccccccccccccccCCccccCCChhhhhHHhHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCC-CCccCCCcCCCCCccc-cCCCCCCccccCCCCCCCCCCCCCCCCcceeeeEEeeccCCCCCccchHH
Q psy15197 793 GANFNQIPVNCP-YRVRVANYQRDAPMAI-DNQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKRYKTEDEDNFSQPRI 870 (902)
Q Consensus 793 g~N~~qlpvN~p-~~~~~~~~~rdG~m~~-~~~~~~~nY~pns~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ddf~Q~~~ 870 (902)
|+||+||||||| +|+ ++||||||+|++ .|+++.|||+|||++++...+.+.+++..++|.+.++.+.++|||+|||+
T Consensus 363 g~N~~qlPvN~P~~~~-~~~~~rdG~m~~~~~~~~~~~y~pn~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~q~~~ 441 (497)
T 1dgf_A 363 GPNYLHIPVNCPYRAR-VANYQRDGPMCMQDNQGGAPNYYPNSFGAPEQQPSALEHSIQYSGEVRRFNTANDDNVTQVRA 441 (497)
T ss_dssp CTTGGGSGGGSCTTSC-CCSSCCCCTTCCSCTTTTCCCSSSCSSCCCBCCGGGCCCCEECCSEEEECCCTTSCCSHHHHH
T ss_pred cCchhccccccccccc-ccCccccCccccccCCCCCccccCCCCCCCcCCCCCCCCcccccCceeeecCCCcchhhhhHH
Confidence 999999999999 995 999999999999 67799999999999987777777778888899999998777899999999
Q ss_pred HHhhcCCHHHHHHHHHHHHHHhcCCChhhhcC
Q psy15197 871 LWSNVLDDAARDRMTTNIASVLKLAAPFIQIL 902 (902)
Q Consensus 871 ~~~~~~~~~ek~~li~n~~~~l~~~~~~I~~~ 902 (902)
||+++|++.||+|||+|++++|++|+++||+|
T Consensus 442 ~~~~~~~~~~~~~l~~n~~~~l~~~~~~i~~~ 473 (497)
T 1dgf_A 442 FYVNVLNEEQRKRLCENIAGHLKDAQIFIQKK 473 (497)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 99879999999999999999999999889875
No 5
>1si8_A Catalase; N-terminal ARM, anti-parallel beta-barrel, wrapping region, terminal helical region, tetramer, heme group, oxidoreducta; HET: HEM; 2.30A {Enterococcus faecalis} SCOP: e.5.1.1
Probab=100.00 E-value=1.7e-119 Score=1024.10 Aligned_cols=423 Identities=48% Similarity=0.818 Sum_probs=402.1
Q ss_pred eeccccCCCCCCCCcccce-eee--eeecccCCcccccc-eecchhhhhhhheecccCceeeEEEEEeeccCCCCCCCCC
Q psy15197 477 VGFLLSELSHPCPVSSKFE-ARI--VVFNITTPITIGYP-VTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTN 552 (902)
Q Consensus 477 kG~vL~~~~~~~~~~~~F~-a~i--rvvHakg~ga~G~f-v~~~is~~~~A~if~~~gk~tpv~vRFS~~~g~~~~~D~~ 552 (902)
+|.+|....+.......|. .++ |++||||.|++|+| ++++++.+|+|++|+.+|++|||++||||++|++|++|++
T Consensus 26 ~Gp~ll~D~~l~ekl~~f~reripeR~vHAKG~ga~G~F~vt~di~~~t~a~~F~~~Gk~tpv~vRFStv~G~~gs~Dt~ 105 (484)
T 1si8_A 26 FGPVLIQDVHLLEKLAHFNRERVPERVVHAKGAGAHGIFKVSQSMAQYTKADFLSEVGKETPLFARFSTVAGELGSSDTL 105 (484)
T ss_dssp TSCBBTTCHHHHHHHHHHHTCCCCCCSSCCSEEEEEEEEEESSCCTTTCCCGGGSSTTCEEEEEEEEECSSCCTTCCSSS
T ss_pred CCCcccccHHHHHHHHHhcCCCCCCccccCCcceeEEEEEECCchhHhhhchhccCCCceeeEEEEecCCCCCCCCCccc
Confidence 4566665554443344454 444 89999999999999 9999999999999999999999999999999999999999
Q ss_pred CCcccceeEEEccCCceeeeccccceeccCChHHHHHHHhhccCCCCCCCCCchhHHHHHhcCchhHHHHHHHhcCCCCC
Q psy15197 553 RDPRGFALKFYTEDGNWDLVGNNTPIFFVRDPFRFIHFIHSQKRNPVTHLRDWDAFWDFISLLPETTHQVMILFSDRGIP 632 (902)
Q Consensus 553 ~d~RG~AiKf~~~eG~~D~v~~n~PvFf~rd~~~F~~~i~a~~~~p~~~~~~~~~~~~f~~~~pe~~~~~~~~~s~~~~p 632 (902)
||+|||||||||+||||||||||+||||+|||++|++|+|++|++|.+++++++++|||++.+||++|+++|+|++||+|
T Consensus 106 rD~RGfAvKfyt~eGn~DlV~nN~PvFfirD~~kFpd~i~a~k~~p~t~~~d~~~~wdf~s~~Pes~h~~~~l~sdrg~P 185 (484)
T 1si8_A 106 RDPRGFALKFYTDEGNYDLVGNNTPIFFIRDAIKFPDFIHSQKRNPRTHLKSPEAVWDFWSHSPESLHQVTILMSDRGIP 185 (484)
T ss_dssp SSCCEEEEEEEETTEEEEEEEESSSSCSCSCGGGHHHHHHHHSBCTTTCSBCHHHHHHHHHTCGGGHHHHHHHHSGGGSB
T ss_pred CCcCceEEEEecCCCceeeeeccCcccccCCHHHHHHHHHhcCCCCcCCCCCHHHHHHHHHhCchhHHHHHHHhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCcccccccceEEEEeCCCCeEEEEEEEEeCCCCCCCCHHHHHHhhCCCCChhHHHHHHHHhcCCCceEEEEEEEeCc
Q psy15197 633 DGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLYDNIAKGNFPSWTFYIQVMTF 712 (902)
Q Consensus 633 ~s~~~~~~~s~~tf~~~n~~G~~~~vk~~~~p~~g~~~l~~~ea~~~~~~~~d~l~~dL~~~i~~g~~p~w~l~vQ~~~~ 712 (902)
.||++|+|||+|||+|+|++|+.+||||||+|.+|+++|+++||.++++.++||+++||+++|++|++|+|+|+||+|++
T Consensus 186 ~s~r~m~g~g~htf~~vn~~G~~~~VK~h~~P~~Gv~~L~~~ea~~~~g~d~d~~~~DL~~aI~~g~~p~w~l~vQl~~~ 265 (484)
T 1si8_A 186 LSFRHMHGFGSHTFKWVNAAGEVFFVKYHFKTNQGIKNLESQLAEEIAGKNPDFHIEDLHNAIENQEFPSWTLSVQIIPY 265 (484)
T ss_dssp SCGGGSCEECCSCEEEECTTCCEEEEEEEEEETTCCCBCCHHHHHHHHHHCTTHHHHHHHHHHHTTCCCEEEEEEEEEEH
T ss_pred CCcccccccccCceEEEcCCCCEEEEEEEEEeCCCCCCCCHHHHHHhcCCChhHhHHHHHHHHHCCCCceEEEEEEeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhccCCCCCCCCccccCCCCCCcEeeEEEEecCCCCCchhhhcccccCCCCCCCcccCCCCchhhhhhhhhHHHhhhhc
Q psy15197 713 EEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNYYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRL 792 (902)
Q Consensus 713 ~d~~~~~~~i~D~Tk~Wpe~~~p~~~vG~l~l~~~~~~~~~~~eq~aF~P~~~v~Gi~~s~Dp~lq~R~~aY~~s~~~R~ 792 (902)
+|+.+|+|||+|+||+|||+++|+++||+|+||+||+|+|++|||+||+|||+||||+||+|||||+|+|||+|||++|+
T Consensus 266 ~d~~~~~~~~~D~Tk~Wpe~~~P~i~VG~l~Lnrnp~n~fae~Eq~aF~P~~~vpGI~pS~D~lLq~R~fsY~ds~r~Rl 345 (484)
T 1si8_A 266 ADALTMKETLFDVTKTVSQKEYPLIEVGTMTLNRNPENYFAEVEQVTFSPGNFVPGIEASPDKLLQGRLFAYGDAHRHRV 345 (484)
T ss_dssp HHHTTCHHHHTCTTCCCCTTTSCCEEEEEEEEEECCSCHHHHTTTCCCCTTCCCTTEECCSCHHHHHHHHHHHHHHHHHT
T ss_pred hhhhcCCCCCCcCCccCCcccCCeeEeEEEEECCCccccccccccccccccccCCccccCCChhhhhHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCccCCCcCCCCCccccCCCCCCccccCCCCC-CCCCCCCCCCCcceeeeEEeeccCCCCCccchHHH
Q psy15197 793 GANFNQIPVNCPYRVRVANYQRDAPMAIDNQNGAPNYYPNSFKG-PEPTPRGAWSTYNATGDVKRYKTEDEDNFSQPRIL 871 (902)
Q Consensus 793 g~N~~qlpvN~p~~~~~~~~~rdG~m~~~~~~~~~nY~pns~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~ddf~Q~~~~ 871 (902)
|+||+|||||||+|+ |+||||||+|+++|+++.|||+|||+++ +...+.+.+++..++|.+.++.+ ++|||+|||+|
T Consensus 346 g~N~~qlPvN~P~~~-~~~~~rdG~m~~~~~~~~~~y~pn~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~q~~~~ 423 (484)
T 1si8_A 346 GANSHQLPINQAKAP-VNNYQKDGNMRFNNGNSEINYEPNSYTETPKEDPTAKISSFEVEGNVGNYSY-NQDHFTQANAL 423 (484)
T ss_dssp CTTGGGSGGGCCSSC-CCCSCCCCTTCSCCCSCSCCCSSCSCTTSCBCCGGGCCCCCBCCSBEEECCC-CCCCSHHHHHH
T ss_pred cCccccCCCCCCCCc-cCCCCcccccccccCCCCCCccCCcCCCCccCCCCCCCCCeeecCceEEecc-ccchhhhHHHH
Confidence 999999999999996 9999999999999999999999999987 66666777788888999998877 78999999999
Q ss_pred HhhcCCHHHHHHHHHHHHHHhcCC-ChhhhcC
Q psy15197 872 WSNVLDDAARDRMTTNIASVLKLA-APFIQIL 902 (902)
Q Consensus 872 ~~~~~~~~ek~~li~n~~~~l~~~-~~~I~~~ 902 (902)
|+ +|++.||+|||+|++++|++| +++||+|
T Consensus 424 ~~-~~~~~~~~~l~~~~~~~l~~~~~~~i~~~ 454 (484)
T 1si8_A 424 YN-LLPSEEKENLINNIAASLGQVKNQEIIAR 454 (484)
T ss_dssp HH-HSCHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HH-cCCHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 98 899999999999999999999 7889875
No 6
>1gwe_A Catalase; oxidoreductase, hdyrogen-peroxide:hydrogen peroxide oxidoreductase; HET: HEM; 0.88A {Micrococcus luteus} SCOP: e.5.1.1 PDB: 1gwh_A* 1hbz_A* 1gwf_A*
Probab=100.00 E-value=4e-119 Score=1023.57 Aligned_cols=424 Identities=43% Similarity=0.715 Sum_probs=400.5
Q ss_pred eeccccCCCCCCCCcccce-eee--eeecccCCcccccc-eecchhhhhhhheecccCceeeEEEEEeeccCCCCCCCCC
Q psy15197 477 VGFLLSELSHPCPVSSKFE-ARI--VVFNITTPITIGYP-VTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTN 552 (902)
Q Consensus 477 kG~vL~~~~~~~~~~~~F~-a~i--rvvHakg~ga~G~f-v~~~is~~~~A~if~~~gk~tpv~vRFS~~~g~~~~~D~~ 552 (902)
+|.+|....+....-..|. .++ |++||||.|++|+| ++++++.+|+|++|+. |++|||++||||++|++|++|++
T Consensus 33 ~Gp~ll~D~~l~ekl~~f~reripeR~vHAKG~ga~G~F~vt~di~~~t~A~~F~~-Gk~tpv~vRFStv~G~~gs~Dt~ 111 (503)
T 1gwe_A 33 EGPIVLHDTHLLETHQHFNRMNIPERRPHAKGSGAFGEFEVTEDVSKYTKALVFQP-GTKTETLLRFSTVAGELGSPDTW 111 (503)
T ss_dssp TSCBCTTCHHHHHHHHHHTTCCCCCCSSCCSEEEEEEEEEECSCCTTTCCCGGGST-TCEEEEEEEEECSSSCTTSCTTS
T ss_pred CCCcccccHHHHHHHHHhcCCCCCCcccCCCcceEEEEEEECCchHHhhhhhhccC-CCeeeEEEEeccCCCCCCCCccc
Confidence 4566665544443334454 444 89999999999999 9999999999999998 99999999999999999999999
Q ss_pred CCcccceeEEEccCCceeeeccccceeccCChHHHHHHHhhccCCCCCCCCCchhHHHHHhcCchhHHHHHHHhcCCCCC
Q psy15197 553 RDPRGFALKFYTEDGNWDLVGNNTPIFFVRDPFRFIHFIHSQKRNPVTHLRDWDAFWDFISLLPETTHQVMILFSDRGIP 632 (902)
Q Consensus 553 ~d~RG~AiKf~~~eG~~D~v~~n~PvFf~rd~~~F~~~i~a~~~~p~~~~~~~~~~~~f~~~~pe~~~~~~~~~s~~~~p 632 (902)
||+|||||||||+||||||||||+||||+|||++|++|+|++|++|.+++++++++|||++++||++|+++|+|++||+|
T Consensus 112 rD~RGfAvKfyt~eGn~DlVgnN~PVFfirD~~kFpd~i~a~k~~p~t~~~d~~~~wdf~s~~Pes~h~~~~l~sdrg~P 191 (503)
T 1gwe_A 112 RDVRGFALRFYTEEGNYDLVGNNTPIFFLRDPMKFTHFIRSQKRLPDSGLRDATMQWDFWTNNPESAHQVTYLMGPRGLP 191 (503)
T ss_dssp SCCCEEEEEEEETTEEEEEEEESSSCCSCSSGGGHHHHHHHHSBCTTTCCBCHHHHHHHHHTCGGGHHHHHHHHSGGGSB
T ss_pred CCcCceEEEEecCCCceeEeecCCCccccCCHHHHHHHHHhcCCCCcCCCCCHHHHHHHHHhChhhhhHHHHhhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCcccccccceEEEEeCCCCeEEEEEEEEeCCCCCCCCHHHHHHhhCCCCChhHHHHHHHHhcCCCceEEEEEEEeCc
Q psy15197 633 DGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLYDNIAKGNFPSWTFYIQVMTF 712 (902)
Q Consensus 633 ~s~~~~~~~s~~tf~~~n~~G~~~~vk~~~~p~~g~~~l~~~ea~~~~~~~~d~l~~dL~~~i~~g~~p~w~l~vQ~~~~ 712 (902)
.||++|+|||+|||+|+|++|+.+||||||+|.+|+++|+++||.++++.++|||++||+++|++|++|+|+|+||+|++
T Consensus 192 ~s~r~m~g~g~htf~~vn~~G~~~~VKfh~~P~~Gv~~L~~~ea~~~~g~d~d~~~~DL~~aI~~G~~p~w~l~VQl~~~ 271 (503)
T 1gwe_A 192 RTWREMNGYGSHTYLWVNAQGEKHWVKYHFISQQGVHNLSNDEATKIAGENADFHRQDLFESIAKGDHPKWDLYIQAIPY 271 (503)
T ss_dssp SCGGGSCEECCSCEEEECTTCCEEEEEEEEEETTCCCBCCHHHHHHHHHHCTTHHHHHHHHHHHTTCCCEEEEEEEEEET
T ss_pred CCcccccccccCceEEEcCCCCEEEEEEEEEeCCCCCCCCHHHHHHhcCCCccHHHHHHHHHHHcCCCCeEEEEEEeeCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhccCCCCCCCCccccCCCCCCcEeeEEEEecCCCCCchhhhcccccCCCCCCCcccCCCCchhhhhhhhhHHHhhhhc
Q psy15197 713 EEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNYYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRL 792 (902)
Q Consensus 713 ~d~~~~~~~i~D~Tk~Wpe~~~p~~~vG~l~l~~~~~~~~~~~eq~aF~P~~~v~Gi~~s~Dp~lq~R~~aY~~s~~~R~ 792 (902)
+|+.+|+|||+|+||+|||+++|+++||+|+||+|++|+|++|||+||+|||+||||+||+|||||+|+|||+|||++|+
T Consensus 272 ~d~~~~~~~~~D~Tk~WPe~~~P~i~VG~l~Lnrnp~n~fae~Eq~aF~P~~~vpGI~pS~DplLq~R~faY~ds~r~Rl 351 (503)
T 1gwe_A 272 EEGKTYRFNPFDLTKTISQKDYPRIKVGTLTLNRNPENHFAQIESAAFSPSNTVPGIGLSPDRMLLGRAFAYHDAQLYRV 351 (503)
T ss_dssp THHHHCSSCTTCTTCCCCTTTSCCEEEEEEEEEECCSCHHHHTTTCCCCTTCCCTTEECCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHhcCCCCCCcCceeCCcccCCceEEEEEEecCCCccccccccccccccccccCCcCCCCChHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCccCCCcCCCCCccccCCCCCCccccCCCCC-CCCCCCCCCCCcceeeeEEeec--cC-CCCCccch
Q psy15197 793 GANFNQIPVNCPYRVRVANYQRDAPMAIDNQNGAPNYYPNSFKG-PEPTPRGAWSTYNATGDVKRYK--TE-DEDNFSQP 868 (902)
Q Consensus 793 g~N~~qlpvN~p~~~~~~~~~rdG~m~~~~~~~~~nY~pns~~~-~~~~~~~~~~~~~~~g~~~~~~--~~-~~ddf~Q~ 868 (902)
|+||+|||||||+|+ ++||||||+|++.|+++.|||+|||+++ +...+.+.+++..++|.+.++. +. ++|||+||
T Consensus 352 g~N~~qlPvN~P~~~-~~~~~rdG~m~~~~~~~~~~y~pn~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~~~Q~ 430 (503)
T 1gwe_A 352 GAHVNQLPVNRPKNA-VHNYAFEGQMWYDHTGDRSTYVPNSNGDSWSDETGPVDDGWEADGTLTREAQALRADDDDFGQA 430 (503)
T ss_dssp CTTGGGSGGGCCSSC-CCCSCCCCTTCCSCCTTCCSSSSCSSSCCCCCCCSSCTTCCCCCCCCCCCCCCCCTTCCSSHHH
T ss_pred cCCcccCCcCCCCCc-cCCCchhhccccccCCCCCCcCCCcCCCCccCCCCCCCCCceecCceeEEeecCCCCcchhhhh
Confidence 999999999999996 9999999999999999999999999987 6677777788888899966554 54 78999999
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHhcCCChhhhcC
Q psy15197 869 RILWSNVLDDAARDRMTTNIASVLKLAAPFIQIL 902 (902)
Q Consensus 869 ~~~~~~~~~~~ek~~li~n~~~~l~~~~~~I~~~ 902 (902)
|+||+++|++.||+|||+|++++|++|+++||+|
T Consensus 431 ~~~~~~~~~~~~~~~l~~n~~~~l~~~~~~i~~~ 464 (503)
T 1gwe_A 431 GTLVREVFSDQERDDFVETVAGALKGVRQDVQAR 464 (503)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 9999879999999999999999999999889875
No 7
>2j2m_A Catalase; functional class, oxidoreductase; HET: HEM; 2.4A {Exiguobacterium oxidotolerans}
Probab=100.00 E-value=5e-119 Score=1021.90 Aligned_cols=424 Identities=38% Similarity=0.707 Sum_probs=400.8
Q ss_pred eeccccCCCCCCCCcccce-eee--eeecccCCcccccc-eecchhhhhhhheecccCceeeEEEEEeeccCCCCCCCCC
Q psy15197 477 VGFLLSELSHPCPVSSKFE-ARI--VVFNITTPITIGYP-VTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTN 552 (902)
Q Consensus 477 kG~vL~~~~~~~~~~~~F~-a~i--rvvHakg~ga~G~f-v~~~is~~~~A~if~~~gk~tpv~vRFS~~~g~~~~~D~~ 552 (902)
+|.+|....+....-..|. .++ |++||||.|++|+| ++++++.+|+|++|+.+|++|||++||||++|++|++|++
T Consensus 28 ~Gp~ll~d~~l~ekl~~f~reripeR~vHAKG~ga~G~F~vt~di~~~t~a~~F~~~Gk~tpv~vRFStv~G~~gs~Dt~ 107 (491)
T 2j2m_A 28 RGPTLLEDYQLIEKIAHFDRERVPERVVHARGFGAHGVFKVKNSMKKYTKAAFLQEEGTEVPVFARFSTVIHGTHSPETL 107 (491)
T ss_dssp TSCBBTTCHHHHHHHHHHTTCCCBCCSSCCSEEEEEEEEEECSCCTTTCCCGGGSSTTCEEEEEEEEECSSSCTTCCTTS
T ss_pred CCCcccccHHHHHHHHhhcCCCCCCccccCCcceeEEEEEECCcchHhhhchhccCCCccceeEeeccCCCCCCCCCccc
Confidence 4566665554443334454 444 89999999999999 9999999999999999999999999999999999999999
Q ss_pred CCcccceeEEEccCCceeeeccccceeccCChHHHHHHHhhccCCCCCCCCCchhHHHHHhcCchhHHHHHHHhcCCCCC
Q psy15197 553 RDPRGFALKFYTEDGNWDLVGNNTPIFFVRDPFRFIHFIHSQKRNPVTHLRDWDAFWDFISLLPETTHQVMILFSDRGIP 632 (902)
Q Consensus 553 ~d~RG~AiKf~~~eG~~D~v~~n~PvFf~rd~~~F~~~i~a~~~~p~~~~~~~~~~~~f~~~~pe~~~~~~~~~s~~~~p 632 (902)
||+|||||||||+||||||||||+||||+|||++|++|+|++|++|.|++++++++|||++.+||++|+++|+|++||+|
T Consensus 108 rD~RGfAvKfyt~eGn~DlV~nN~PVFfirD~~kFpd~i~a~k~~p~t~~~d~~~~wdf~s~~Pes~h~~~~l~sdrg~P 187 (491)
T 2j2m_A 108 RDPRGFSVKFYTEEGNWDFVGNNLPVFFIRDAMKFPDMVHSLKPDPRTNIQDPDRYWDFMTLRPESTNMLMHIFTDEGIP 187 (491)
T ss_dssp CSCCEEEEEEEETTEEEEEEEESSSSCSCSSGGGHHHHHHHHSCCTTTCSCCHHHHHHHHHHSGGGHHHHHHHTSGGGSB
T ss_pred CCcCceEEEEecCCcceeeeecCCCccccCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHhCchHHhHHHHHhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCcccccccceEEEEeCCCCeEEEEEEEEeCCCCCCCCHHHHHHhhCCCCChhHHHHHHHHhcCCCceEEEEEEEeCc
Q psy15197 633 DGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLYDNIAKGNFPSWTFYIQVMTF 712 (902)
Q Consensus 633 ~s~~~~~~~s~~tf~~~n~~G~~~~vk~~~~p~~g~~~l~~~ea~~~~~~~~d~l~~dL~~~i~~g~~p~w~l~vQ~~~~ 712 (902)
.||++|+|||+|||+|+|++|+.+||||||+|.+|+++|+++||.++++.++|||++||+++|++|++|+|+|+||+|++
T Consensus 188 ~syr~m~g~g~htf~~vn~~G~~~~VK~h~~P~~Gv~~L~~~ea~~~~g~d~d~~~~DL~~aI~~G~~p~w~l~vQl~~~ 267 (491)
T 2j2m_A 188 ASYRKMRGSSVHSFKWVNAHGNTVYIKLRWVPKEGVHNLSADEATEVQGKDFNHASNDTFQAIENGDFPEWDLFVQVLDP 267 (491)
T ss_dssp SCGGGCCEECCSCEEEECTTCCEEEEEEEEEETTCCCBCCHHHHHHHHHHCTTHHHHHHHHHHHTTCCCEEEEEEEEECG
T ss_pred CChhhccCccccceeeEcCCCCEEEEEEEEEeCCCCCCCCHHHHHHhcCCChhHHHHHHHHHHHcCCCCeEEEEEEeech
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhccCCCCCCCCccccCCCCCCcEeeEEEEecCCCCCchhhhcccccCCCCCCCcccCCCCchhhhhhhhhHHHhhhhc
Q psy15197 713 EEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNYYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRL 792 (902)
Q Consensus 713 ~d~~~~~~~i~D~Tk~Wpe~~~p~~~vG~l~l~~~~~~~~~~~eq~aF~P~~~v~Gi~~s~Dp~lq~R~~aY~~s~~~R~ 792 (902)
+|+.+++|||+|+||+|||+++|+++||+|+||+|++|+|++|||+||+|||+||||+||+|||||+|+|||+|||++|+
T Consensus 268 ~d~~~~~~~~~D~Tk~Wpe~~~P~i~VG~l~Lnrnp~n~fae~Eq~aF~P~~~vpGI~pS~D~lLq~R~faY~ds~r~Rl 347 (491)
T 2j2m_A 268 ADVENFDFDPLDATKDWFEDVIPFQHVGTMTLNKNVDNYFAETESVGFNPGVLVPGMLPSEDKLLQGRLFSYSDTQRHRI 347 (491)
T ss_dssp GGGGGSSSCTTCTTCCCCTTTSCCEEEEEEEEEEECSCTCCCCCTCCCCTTCCCTTEEECSCHHHHHHHHHHHHHHHHHT
T ss_pred hhhhcCCCCCCCCCccCCcccCCcEEEEEEEecCCCcchhhhhhhhhcCcccccCCcccCCChHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCccCCCcCCCCCccccCCCCCCccccCCCCC-CCCCCCCCCCCcceeeeEE-eeccCCCCCccchHH
Q psy15197 793 GANFNQIPVNCPYRVRVANYQRDAPMAIDNQNGAPNYYPNSFKG-PEPTPRGAWSTYNATGDVK-RYKTEDEDNFSQPRI 870 (902)
Q Consensus 793 g~N~~qlpvN~p~~~~~~~~~rdG~m~~~~~~~~~nY~pns~~~-~~~~~~~~~~~~~~~g~~~-~~~~~~~ddf~Q~~~ 870 (902)
|+||+|||||||+|+ |+||||||+|++.++++.|||+|||+++ +...+.+.+++..++|.+. ++.+.++|||+|||+
T Consensus 348 g~N~~qlPvN~P~~~-~~~~~rdG~m~~~~~~~~~~y~pn~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~q~~~ 426 (491)
T 2j2m_A 348 GPNYQQLPINCPFAQ-VNNYQRDGAMPFKQQTSSVNYEPNRYQDEPKQTPEYTEDTQPLHDDIHGRLEIEKTNNFGQAGE 426 (491)
T ss_dssp CTTGGGSTTTCCSSC-CCCSCCCCSSCTTCCCCSCCSSSCSCTTSCBCCGGGSCCCEECCCSEEEECCCSCCCTTHHHHH
T ss_pred cCccccCCCCCCCcc-cCCcchhhhcccccCCCCCCccCCcCCCCccCCCCCCCCCceeccceEeecccCCcchhhhhHH
Confidence 999999999999996 9999999999995449999999999987 6666677777888899988 777668899999999
Q ss_pred HHhhcCCHHHHHHHHHHHHHHhcCCChh-hhcC
Q psy15197 871 LWSNVLDDAARDRMTTNIASVLKLAAPF-IQIL 902 (902)
Q Consensus 871 ~~~~~~~~~ek~~li~n~~~~l~~~~~~-I~~~ 902 (902)
||+ +|++.||+|||+|++++|++|+++ ||+|
T Consensus 427 ~~~-~~~~~~~~~l~~n~~~~l~~~~~~~i~~~ 458 (491)
T 2j2m_A 427 VYR-RMTEEEQMALLNNLVNDLQQVRHENTVLL 458 (491)
T ss_dssp HHH-HSCHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHH-cCCHHHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 998 899999999999999999999877 8875
No 8
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=100.00 E-value=5.9e-119 Score=1052.01 Aligned_cols=425 Identities=36% Similarity=0.594 Sum_probs=398.2
Q ss_pred eeeccccCCCCCCCCcccce-eee--eeecccCCcccccc-eecchhhhhhhheecccCceeeEEEEEeeccCCCCCCCC
Q psy15197 476 SVGFLLSELSHPCPVSSKFE-ARI--VVFNITTPITIGYP-VTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADT 551 (902)
Q Consensus 476 ~kG~vL~~~~~~~~~~~~F~-a~i--rvvHakg~ga~G~f-v~~~is~~~~A~if~~~gk~tpv~vRFS~~~g~~~~~D~ 551 (902)
.+|.+|....+....-..|. ++| |++||||.|++|+| ++++++.+|+|++|+.+|++|||++||||++|++|++|+
T Consensus 42 ~~Gp~llqD~~l~eklahFdrErIPeR~vHAKG~gA~G~F~vt~d~s~~t~A~~f~~~Gk~tPv~vRFStv~G~~gs~Dt 121 (688)
T 3ej6_A 42 GRGSTLLEDFIFRQKLQHFDHERIPERVVHARGAGAHGIFTSYGDWSNITAASFLGAKDKQTPVFVRFSTVAGSRGSADT 121 (688)
T ss_dssp TTCCBBTTCHHHHHHHHHHHTCCCCCCSSCCSEEEEEEEEEECSBCTTTCCCSTTBSTTCEEEEEEEEECSSSCTTCCTT
T ss_pred CCCchhHHHHHHHHHHHHhcccCCcccccccCceEEEEEEEECCCchHhhhhHhhcCCCceeEEEEEecCCCCCCCCccc
Confidence 35777776666555556675 666 99999999999999 999999999999999899999999999999999999999
Q ss_pred CCCcccceeEEEccCCceeeeccccceeccCChHHHHHHHhhccCCCCCCCCCc----hhHHHHHhcCchhHHHHHHHhc
Q psy15197 552 NRDPRGFALKFYTEDGNWDLVGNNTPIFFVRDPFRFIHFIHSQKRNPVTHLRDW----DAFWDFISLLPETTHQVMILFS 627 (902)
Q Consensus 552 ~~d~RG~AiKf~~~eG~~D~v~~n~PvFf~rd~~~F~~~i~a~~~~p~~~~~~~----~~~~~f~~~~pe~~~~~~~~~s 627 (902)
.||+|||||||||+||||||||||+||||+|||++||+|+|++|++|.|+++++ +++|||++.+||++||++|+||
T Consensus 122 ~rD~RGfAvKFyt~eGn~DlVgnN~PVFFirDp~kFpdfiha~k~~P~t~~~~~~~~~~~~wdF~s~~PEs~h~~~~l~s 201 (688)
T 3ej6_A 122 ARDVHGFATRFYTDEGNFDIVGNNIPVFFIQDAIRFPDLIHSVKPSPDNEVPQAATAHDSAWDFFSSQPSALHTLFWAMS 201 (688)
T ss_dssp SSSCCEEEEEEEETTEEEEEEEESSSSCSCSSGGGHHHHHHHHSCBTTTTBSTTCCCSHHHHHHHHHSGGGHHHHHHHHS
T ss_pred CCCCccEEEEEEcCCCCcccccccCCccccCCHHHHHHHHHhhccCCCcCCCChhhhhhHHHHHHHhChhhHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999986 7899999999999999999999
Q ss_pred CCCCCCCcCcccccccceEEEEeCCCCeEEEEEEEEeCCCCCCCCHHHHHHhhCCCCChhHHHHHHHHhcCCCceEEEEE
Q psy15197 628 DRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLYDNIAKGNFPSWTFYI 707 (902)
Q Consensus 628 ~~~~p~s~~~~~~~s~~tf~~~n~~G~~~~vk~~~~p~~g~~~l~~~ea~~~~~~~~d~l~~dL~~~i~~g~~p~w~l~v 707 (902)
+||+|.||++|+|||+|||+|+|++|+++||||||+|.+|+++|+++||.++++.+||||++||+++|++|++|+|+|+|
T Consensus 202 drg~P~Syr~m~g~g~htf~~vn~~G~~~~VKfh~~p~~G~~~l~~~EA~~~~g~dpD~l~~DL~~~I~~G~~p~w~l~v 281 (688)
T 3ej6_A 202 GNGIPRSYRHMDGFGIHTFRLVTEDGKSKLVKWHWKTKQGKAALVWEEAQVLAGKNADFHRQDLWDAIESGNAPSWELAV 281 (688)
T ss_dssp GGGSBSCSTTCCEECCSCEEEECTTSCEEEEEEEEEESSCCCBCCHHHHHHHHHHCTTHHHHHHHHHHHTTCCCEEEEEE
T ss_pred cCCCCCCcccCCcccccceEEEeCCCCEEEEEEEEEECCCCCCCCHHHHHHhhCCCccHHHHHHHHHHhcCCCceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCcchhccCCCCCCCCccccCCCCCCcEeeEEEEecCCCCCchhhhcccccCCCCCCCcccCCCCchhhhhhhhhHHH
Q psy15197 708 QVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNYYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDT 787 (902)
Q Consensus 708 Q~~~~~d~~~~~~~i~D~Tk~Wpe~~~p~~~vG~l~l~~~~~~~~~~~eq~aF~P~~~v~Gi~~s~Dp~lq~R~~aY~~s 787 (902)
|+|+++|+.+|+|||+|+||+|||+++|+++||+|+||+||+|||++|||+||+|||+||||+||+|||||+|+|||+||
T Consensus 282 Qv~~~~d~~~~~f~~~D~Tk~WPe~~~P~i~VG~l~Lnrnp~n~fae~Eq~aF~P~~lvpGI~~S~DplLq~R~fsY~dt 361 (688)
T 3ej6_A 282 QLIDEDKAQAYGFDLLDPTKFLPEEFAPLQVLGEMTLNRNPMNYFAETEQISFQPGHIVRGVDFTEDPLLQGRLYSYLDT 361 (688)
T ss_dssp EEECGGGSSCSSSCTTCTTCCCCTTTSCCEEEEEEEEEECCSCHHHHTTTCCCCTTCCCTTEECCCCHHHHHHHHHHHHH
T ss_pred EEechhhhhhcCCCCCcCCeecCCccCcceEEEEEEEcCCccchhhhhhhcccCccccCCCcCCCCChHhhhhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhc-CCCCCCCCCCCCCCccCCCcCCCCCccccCCCCCCccccCCCCC--CCCCCC------CCCCCcceeeeEEeec
Q psy15197 788 HIHRL-GANFNQIPVNCPYRVRVANYQRDAPMAIDNQNGAPNYYPNSFKG--PEPTPR------GAWSTYNATGDVKRYK 858 (902)
Q Consensus 788 ~~~R~-g~N~~qlpvN~p~~~~~~~~~rdG~m~~~~~~~~~nY~pns~~~--~~~~~~------~~~~~~~~~g~~~~~~ 858 (902)
|+||| |+||+|||||||+|+ |+||||||+|++...++.+||+|||+++ |...+. +..++..++|.+.|+.
T Consensus 362 qr~Rl~G~N~~qlPvN~p~~~-~~~~~rDG~m~~~~~~~~~~y~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 440 (688)
T 3ej6_A 362 QLNRHRGPNFEQLPINRPVSG-VHNNHRDGQGQAWIHKNIHHYSPSYLNKGYPAQANQTVGRGFFTTPGRTASGVLNREL 440 (688)
T ss_dssp HHHHHSSSCGGGSTTTCCSSC-CCSSCCCCTTCCCEECCSCCSSSCTTTTTCSBCCCSSSTTCCCCCTTCEEEEEEESSC
T ss_pred HHhhccCCChhhCCCCCCCCC-cCCcCcCCccccccCCCCCCcCCCCCCCCCCccCcccccCccccCCCceeecceEecc
Confidence 99998 999999999999996 9999999999985556779999999964 443332 2345568999999987
Q ss_pred cC-CCCCccchHHHHhhcCCHHHHHHHHHHHHHHhcCC-ChhhhcC
Q psy15197 859 TE-DEDNFSQPRILWSNVLDDAARDRMTTNIASVLKLA-APFIQIL 902 (902)
Q Consensus 859 ~~-~~ddf~Q~~~~~~~~~~~~ek~~li~n~~~~l~~~-~~~I~~~ 902 (902)
+. ++|||+|||+||+ +|++.||+|||+|++++|++| +++||+|
T Consensus 441 ~~~~~d~~~Q~~~~~~-~~~~~~~~~l~~n~~~~l~~~~~~~i~~r 485 (688)
T 3ej6_A 441 SATFDDHYTQPRLFFN-SLTPVEQQFVINAIRFEASHVTNEQVKKN 485 (688)
T ss_dssp CGGGCCCSHHHHHHHH-TSCHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred CcCCcchhHHHHHHHH-hCCHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 65 6899999999998 899999999999999999999 4789875
No 9
>1qwl_A KATA catalase; beta barrel, azide complex, oxyferryl complex, oxidoreductas; HET: HEM; 1.60A {Helicobacter pylori} SCOP: e.5.1.1 PDB: 1qwm_A* 2a9e_A* 2iqf_A*
Probab=100.00 E-value=8.1e-119 Score=1021.45 Aligned_cols=424 Identities=47% Similarity=0.775 Sum_probs=400.7
Q ss_pred eeccccCCCCCCCCcccce-eee--eeecccCCcccccc-eecchhhhhhhheecccCceeeEEEEEeeccCCCCCCCCC
Q psy15197 477 VGFLLSELSHPCPVSSKFE-ARI--VVFNITTPITIGYP-VTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTN 552 (902)
Q Consensus 477 kG~vL~~~~~~~~~~~~F~-a~i--rvvHakg~ga~G~f-v~~~is~~~~A~if~~~gk~tpv~vRFS~~~g~~~~~D~~ 552 (902)
+|.+|....+....-..|. .++ |++||||.|++|+| ++++++.+|+|++|+.+|++|||++||||++|++|++|++
T Consensus 28 ~Gp~ll~D~~l~ekl~~f~reripeR~vHAKG~ga~G~F~vt~di~~~t~A~~F~~~Gk~tpv~vRFStv~G~~gs~Dt~ 107 (505)
T 1qwl_A 28 RGPVLLQSTWFLEKLAAFDRERIPERVVHAKGSGAYGTFTVTKDITKYTKAKIFSKVGKKTECFFRFSTVAGERGSADAV 107 (505)
T ss_dssp TSCBBTTCHHHHHHHHHHTTCCCCCCSSCCSEEEEEEEEEECSCCTTTCCCGGGSSTTCEEEEEEEEECSSCCTTSCSSS
T ss_pred CCCCcCCcHHHHHHHHHhcCCCCCCccccCCcceeEEEEEECCCchHhhhchhccCCCceeeEEEEeccCCCCCCCCccc
Confidence 4566665544433333453 444 89999999999999 9999999999999999999999999999999999999999
Q ss_pred CCcccceeEEEccCCceeeeccccceeccCChHHHHHHHhhccCCCCCCCCCchhHHHHHhcCchhHHHHHHHhcCCCCC
Q psy15197 553 RDPRGFALKFYTEDGNWDLVGNNTPIFFVRDPFRFIHFIHSQKRNPVTHLRDWDAFWDFISLLPETTHQVMILFSDRGIP 632 (902)
Q Consensus 553 ~d~RG~AiKf~~~eG~~D~v~~n~PvFf~rd~~~F~~~i~a~~~~p~~~~~~~~~~~~f~~~~pe~~~~~~~~~s~~~~p 632 (902)
||+|||||||||+||||||||||+||||+|||++|++|+|++|++|.+++++++++|||++.+||++|+++|+|++||+|
T Consensus 108 rD~RGfAvKfyt~eGn~DlVgnN~PVFfirD~~kFpd~iha~k~~p~t~~~d~~~~wdf~s~~PEs~h~~~~l~sdrg~P 187 (505)
T 1qwl_A 108 RDPRGFAMKYYTEEGNWDLVGNNTPVFFIRDAIKFPDFIHTQKRDPQTNLPNHDMVWDFWSNVPESLYQVTWVMSDRGIP 187 (505)
T ss_dssp SSCCEEEEEEEETTEEEEEEEESSSCCSCSSGGGHHHHHHHHSCCTTTCSCCHHHHHHHHHHCGGGHHHHHHHHSGGGSB
T ss_pred CCcCceEEEEecCCCceeEeecCCCccccCCHHHHHHHHHhcCCCCcCCCCCHHHHHHHHHhChhHHHHHHHHhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCcccccccceEEEEeCCCCeEEEEEEEEeCCCCCCCCHHHHHHhhCCCCChhHHHHHHHHhcCCCceEEEEEEEeCc
Q psy15197 633 DGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLYDNIAKGNFPSWTFYIQVMTF 712 (902)
Q Consensus 633 ~s~~~~~~~s~~tf~~~n~~G~~~~vk~~~~p~~g~~~l~~~ea~~~~~~~~d~l~~dL~~~i~~g~~p~w~l~vQ~~~~ 712 (902)
.||++|+|||+|||+|+|++|+.+||||||+|.+|+++|+++||.++++.++|||++||+++|++|++|+|+|+||+|++
T Consensus 188 ~syr~m~g~g~htf~~vn~~G~~~~VKfh~~P~~Gv~~L~~~ea~~~~g~d~d~~~~DL~~aI~~G~~p~w~l~VQl~~~ 267 (505)
T 1qwl_A 188 KSFRHMDGFGSHTFSLINAKGERFWVKFHFHTMQGVKHLTNEEAAEIRKHDPDSNQRDLFDAIARGDYPKWKLSIQVMPE 267 (505)
T ss_dssp SSGGGSCEECCSCEEEECTTCCEEEEEEEEEETTCCCBCCHHHHHHHHTTCTTHHHHHHHHHHHTTCCCEEEEEEEEEEG
T ss_pred CCcccccccccCceeEEcCCCCEEEEEEEEEeCCCcCCCCHHHHHHhcCCCccHHHHHHHHHHHcCCCceEEEEEEeech
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhccCCCCCCCCccccCCCCCCcEeeEEEEecCCCCCchhhhcccccCCCCCCCcccCCCCchhhhhhhhhHHHhhhhc
Q psy15197 713 EEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNYYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRL 792 (902)
Q Consensus 713 ~d~~~~~~~i~D~Tk~Wpe~~~p~~~vG~l~l~~~~~~~~~~~eq~aF~P~~~v~Gi~~s~Dp~lq~R~~aY~~s~~~R~ 792 (902)
+|+.+|+|||+|+||+|||+++|+++||+|+||+||+|+|++|||+||+|||+||||+||+|||||+|+|||+|||++|+
T Consensus 268 ~d~~~~~~~~~D~Tk~WPe~~~P~i~VG~L~Lnrnp~n~fae~EqlaF~P~~~vpGI~pS~DplLq~R~fsY~ds~r~Rl 347 (505)
T 1qwl_A 268 EDAKKYRFHPFDVTKIWYTQDYPLMEVGIVELNKNPENYFAEVEQAAFTPANVVPGIGYSPDRMLQGRLFSYGDTHRYRL 347 (505)
T ss_dssp GGTTTCSSCTTCTTCCCCTTTSCCEEEEEEEEEECCSCHHHHTTTCCCCTTCCCTTEECCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCCCCCCcCCeeCCccCCCceEEEEEEECCCcccchhhhhhhhcCccccCCCcccCCChhhhhHHhHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCccCCCcCCCCCccccCCCCCCccccCCCCCCCCCCCCCCCCcceee-----eEEeeccC--CCCCc
Q psy15197 793 GANFNQIPVNCPYRVRVANYQRDAPMAIDNQNGAPNYYPNSFKGPEPTPRGAWSTYNATG-----DVKRYKTE--DEDNF 865 (902)
Q Consensus 793 g~N~~qlpvN~p~~~~~~~~~rdG~m~~~~~~~~~nY~pns~~~~~~~~~~~~~~~~~~g-----~~~~~~~~--~~ddf 865 (902)
|+||+|||||||+|+ ++||||||+|+..|+++.|||+|||++++...+.+.+++..++| .+.++.+. ++|||
T Consensus 348 g~N~~qlPvN~P~~~-~~~~~rdG~m~~~~~~~~~~y~pns~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~ 426 (505)
T 1qwl_A 348 GVNYPQIPVNKPRCP-FHSSSRDGYMQNGYYGSLQNYTPSSLPGYKEDKSARDPKFNLAHIEKEFEVWNWDYRADDSDYY 426 (505)
T ss_dssp CTTGGGSGGGSCSSC-CCCSCCCCTTCCCTTTTCCCCSSCSSSCCCCCGGGCCCCBCGGGTCSCCCBSCCCHHHHCCCCS
T ss_pred cCCcccCCCCCCCCc-cCCCCccccccccCCCCCCCccCCcCCCccCCCCCCCCCccccCcccceeeEeeccCCCCcchh
Confidence 999999999999996 99999999999657799999999999987777777777888889 77788654 78999
Q ss_pred cchHHHHhhcCCHHHHHHHHHHHHHHhcCCC-hhhhcC
Q psy15197 866 SQPRILWSNVLDDAARDRMTTNIASVLKLAA-PFIQIL 902 (902)
Q Consensus 866 ~Q~~~~~~~~~~~~ek~~li~n~~~~l~~~~-~~I~~~ 902 (902)
+|||+||+ +|++.||+|||+|++++|++|+ ++||+|
T Consensus 427 ~Q~~~~~~-~~~~~~~~~l~~n~~~~l~~~~~~~i~~~ 463 (505)
T 1qwl_A 427 TQPGDYYR-SLPADEKERLHDTIGESLAHVTHKEIVDK 463 (505)
T ss_dssp HHHHHHHH-HSCHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred hhhHHHHH-hCCHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 99999998 8999999999999999999998 889875
No 10
>1a4e_A Catalase A; oxidoreductase, peroxidase; HET: HEM; 2.40A {Saccharomyces cerevisiae} SCOP: e.5.1.1
Probab=100.00 E-value=1.7e-118 Score=1016.82 Aligned_cols=424 Identities=47% Similarity=0.766 Sum_probs=398.5
Q ss_pred eeccccCCCCCCCCcccce-eee--eeecccCCcccccc-eecchhhhhhhheecccCceeeEEEEEeeccCCCCCCCCC
Q psy15197 477 VGFLLSELSHPCPVSSKFE-ARI--VVFNITTPITIGYP-VTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTN 552 (902)
Q Consensus 477 kG~vL~~~~~~~~~~~~F~-a~i--rvvHakg~ga~G~f-v~~~is~~~~A~if~~~gk~tpv~vRFS~~~g~~~~~D~~ 552 (902)
+|.+|....+....-..|. .++ |++||||.|++|+| ++++++.+|+|++|+.+|++|||++||||++|++|++|++
T Consensus 28 ~Gp~ll~D~~l~ekl~~f~reripeR~vHAKG~ga~G~F~vt~di~~~t~a~~F~~~Gk~tpv~vRFStv~G~~gs~Dt~ 107 (488)
T 1a4e_A 28 HGPLLLQDYNLIDSLAHFNRENIPQRNPHAHGSGAFGYFEVTDDITDICGSAMFSKIGKRTKCLTRFSTVGGDKGSADTV 107 (488)
T ss_dssp TSCBBTTCHHHHHHHHHHTTCCCCCCSSCCSEEEEEEEEEECSCCTTTCCCGGGSSTTCEEEEEEEEECSSSCTTCCSSS
T ss_pred CCCcccccHHHHHHHHhhcCCCCCccccCCCceEEEEEEEECCCchHhhhchhccCCCceeeEEEEeecCCCCCCCCCcc
Confidence 4566665554443334454 344 89999999999999 9999999999999999999999999999999999999999
Q ss_pred CCcccceeEEEccCCceeeeccccceeccCChHHHHHHHhhccCCCCCCCCCchhHHHHHhc--CchhHHHHHHHhcCCC
Q psy15197 553 RDPRGFALKFYTEDGNWDLVGNNTPIFFVRDPFRFIHFIHSQKRNPVTHLRDWDAFWDFISL--LPETTHQVMILFSDRG 630 (902)
Q Consensus 553 ~d~RG~AiKf~~~eG~~D~v~~n~PvFf~rd~~~F~~~i~a~~~~p~~~~~~~~~~~~f~~~--~pe~~~~~~~~~s~~~ 630 (902)
||+|||||||||+||||||||||+||||+|||++|++|+|++|++|.+++++++++|||++. +||++|+++|+|++||
T Consensus 108 rD~RGfAvKfyt~eGn~DlV~nN~PVFfirD~~kFpd~i~a~k~~p~t~~~d~~~~wdf~s~~~~Pes~h~~~~l~sdrg 187 (488)
T 1a4e_A 108 RDPRGFATKFYTEEGNLDWVYNNTPVFFIRDPSKFPHFIHTQKRNPQTNLRDADMFWDFLTTPENQVAIHQVMILFSDRG 187 (488)
T ss_dssp SSCCEEEEEEEETTEEEEEEEESSSSCSCSCTTHHHHHHHHHSCCTTTCSCCHHHHHHHHTSGGGGGGHHHHHHHHSGGG
T ss_pred CCcCceEEEEecCCCccceeeecCCccccCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHhccCChHHhhHHHHhhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCCCcCcccccccceEEEEeCCCCeEEEEEEEEeCCCCCCCCHHHHHHhhCCCCChhHHHHHHHHhcCCCceEEEEEEEe
Q psy15197 631 IPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLYDNIAKGNFPSWTFYIQVM 710 (902)
Q Consensus 631 ~p~s~~~~~~~s~~tf~~~n~~G~~~~vk~~~~p~~g~~~l~~~ea~~~~~~~~d~l~~dL~~~i~~g~~p~w~l~vQ~~ 710 (902)
+|.||++|+|||+|||+|+|++|+.+||||||+|.+|+++|+++||.++++.++|||++||+++|++|++|+|+|+||+|
T Consensus 188 ~P~s~r~m~g~g~htf~~vn~~G~~~~VKfh~~P~~Gv~~L~~~ea~~~~g~d~d~~~~dL~~~I~~g~~p~w~l~vQl~ 267 (488)
T 1a4e_A 188 TPANYRSMHGYSGHTYKWSNKNGDWHYVQVHIKTDQGIKNLTIEEATKIAGSNPDYCQQDLFEAIQNGNYPSWTVYIQTM 267 (488)
T ss_dssp SBSCGGGCCEECCSCEEEECTTSCEEEEEEEEEESSCCCBCCHHHHHHHHHHCTTHHHHHHHHHHHTTCCCEEEEEEEEE
T ss_pred CCCCccccccccccceEEEcCCCCEEEEEEEEEECCCCCCCCHHHHHHhcCCChhHHHHHHHHHHHcCCCCeEEEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhccCCCCCCCCccccCCCCCCcEeeEEEEecCCCCCchhhhcccccCCCCCCCcccCCCCchhhhhhhhhHHHhhh
Q psy15197 711 TFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNYYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIH 790 (902)
Q Consensus 711 ~~~d~~~~~~~i~D~Tk~Wpe~~~p~~~vG~l~l~~~~~~~~~~~eq~aF~P~~~v~Gi~~s~Dp~lq~R~~aY~~s~~~ 790 (902)
+++|+.+|+|||+|+||+|||+++|+++||+|+||+|++|+|++|||+||+|||+||||+||+|||||+|+|||+|||++
T Consensus 268 ~~~d~~~~~f~~~D~Tk~Wpe~~~P~i~VG~l~Lnrnp~n~fae~Eq~aF~P~~~vpGI~pS~D~lLq~R~faY~ds~r~ 347 (488)
T 1a4e_A 268 TERDAKKLPFSVFDLTKVWPQGQFPLRRVGKIVLNENPLNFFAQVEQAAFAPSTTVPYQEASADPVLQARLFSYADAHRY 347 (488)
T ss_dssp CHHHHHTSSSCTTCTTCCCCTTTSCCEEEEEEEEEECCSCHHHHTTTCCCCTTCCCTTEEECSCHHHHHHHHHHHHHHHH
T ss_pred cHHHHhcCCCCCCCCCCcCCcccCCceEEEEEEecCCCcchhhhhhhHhcCcccccCCcCCCCChHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCCCCCCcc-CCCcCCCCCccc-cCCCCCCccccCCCC---CCCCCCCCCCCCcceeeeEEeeccC---CC
Q psy15197 791 RLGANFNQIPVNCPYRVR-VANYQRDAPMAI-DNQNGAPNYYPNSFK---GPEPTPRGAWSTYNATGDVKRYKTE---DE 862 (902)
Q Consensus 791 R~g~N~~qlpvN~p~~~~-~~~~~rdG~m~~-~~~~~~~nY~pns~~---~~~~~~~~~~~~~~~~g~~~~~~~~---~~ 862 (902)
|+|+||+|||||||+|+. ++||||||+|++ .|+++.|||+|||++ ++...+.+.+.+ .++|.+.++.+. ++
T Consensus 348 Rlg~N~~qlPvN~P~~~~~~~~~~rdG~m~~~~~~~~~~~y~pn~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~ 426 (488)
T 1a4e_A 348 RLGPNFHQIPVNCPYASKFFNPAIRDGPMNVNGNFGSEPTYLANDKSYTYIQQDRPIQQHQE-VWNGPAIPYHWATSPGD 426 (488)
T ss_dssp HTCTTGGGSGGGSCTTSCCCCTTSCCCTTCCSCTTTTCCSSCCTTSCCBCCCTTCCSSTTSC-CEEECEEEECCCCCSSS
T ss_pred hcccccccCCcCCCCCcccccChhhccccccccCCCCCcccccCccCCCCCCccCCCCcCCC-CccccEEEeecccCCCc
Confidence 999999999999999943 999999999999 577999999999997 566666665533 569999999865 78
Q ss_pred CCccchHHHHhhcC--CHHHHHHHHHHHHHHhcCCChhhhcC
Q psy15197 863 DNFSQPRILWSNVL--DDAARDRMTTNIASVLKLAAPFIQIL 902 (902)
Q Consensus 863 ddf~Q~~~~~~~~~--~~~ek~~li~n~~~~l~~~~~~I~~~ 902 (902)
|||+|||+||+ +| ++.||+|||+|++++|++|+++||+|
T Consensus 427 ~~~~Q~~~~~~-~~~~~~~~~~~l~~n~~~~l~~~~~~i~~~ 467 (488)
T 1a4e_A 427 VDFVQARNLYR-VLGKQPGQQKNLAYNIGIHVEGACPQIQQR 467 (488)
T ss_dssp HHHHHHHHHHH-HHHSSTTHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 99999999998 89 99999999999999999999889875
No 11
>2xq1_A Peroxisomal catalase; oxidoreductase, hydrogen peroxide detoxification, PTS1; HET: HEM; 2.90A {Pichia angusta}
Probab=100.00 E-value=1.3e-117 Score=1012.25 Aligned_cols=423 Identities=47% Similarity=0.816 Sum_probs=394.9
Q ss_pred eeccccCCCCCCCCcccce-eee--eeecccCCcccccc-eecchhhhhhhheecccCceeeEEEEEeeccCCCCCCCCC
Q psy15197 477 VGFLLSELSHPCPVSSKFE-ARI--VVFNITTPITIGYP-VTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTN 552 (902)
Q Consensus 477 kG~vL~~~~~~~~~~~~F~-a~i--rvvHakg~ga~G~f-v~~~is~~~~A~if~~~gk~tpv~vRFS~~~g~~~~~D~~ 552 (902)
+|.+|....+.......|. .++ |++||||.|++|+| ++++++.+|+|++|+.+|++|||++||||++|++|++|++
T Consensus 39 ~Gp~ll~D~~l~ekl~~f~reripeR~vHAKG~ga~G~F~vt~dis~~t~A~~F~~~Gk~tpv~vRFStv~G~~gs~Dt~ 118 (509)
T 2xq1_A 39 IGPLLLQDFKLIDTLSHFDRERIPERVVHAKGAGAYGVFEVTDDITDVCSAKFLDTVGKKTRIFTRFSTVGGEKGSADTA 118 (509)
T ss_dssp CCCBBTTCHHHHHHHHHHTTCCCCCCSSCCSEEEEEEEEEECSCCTTTCCCGGGSSTTCEEEEEEEEECSSCCTTSCTTS
T ss_pred CCCcccccHHHHHHHHhhcCCCCCCccccCCcceeEEEEEECCchhHhhhchhccCCCceeeEEEEeecCCCCCCCCCcC
Confidence 4566655544443334454 344 89999999999999 9999999999999999999999999999999999999999
Q ss_pred CCcccceeEEEccCCceeeeccccceeccCChHHHHHHHhhccCCCCCCCCCchhHHHHHhcCchhHHHHHHHhcCCCCC
Q psy15197 553 RDPRGFALKFYTEDGNWDLVGNNTPIFFVRDPFRFIHFIHSQKRNPVTHLRDWDAFWDFISLLPETTHQVMILFSDRGIP 632 (902)
Q Consensus 553 ~d~RG~AiKf~~~eG~~D~v~~n~PvFf~rd~~~F~~~i~a~~~~p~~~~~~~~~~~~f~~~~pe~~~~~~~~~s~~~~p 632 (902)
||+|||||||||+||||||||||+||||+|||++|++|+|++|++|.|++++++++|||++.+||++|+++|+|++||+|
T Consensus 119 rD~RGfAvKfyt~eGn~DlVgnN~PVFfirD~~kFpd~iha~k~~p~t~~~d~~~~~df~s~~Pes~h~~~~l~sdrg~P 198 (509)
T 2xq1_A 119 RDPRGFATKFYTEDGNLDLVYNNTPIFFIRDPIKFPHFIHTQKRNPATNLKDPNMFWDYLTANDESLHQVMYLFSNRGTP 198 (509)
T ss_dssp SSCCEEEEEEEETTEEEEEEEESSSCCSCSSGGGHHHHHHHHSBCTTTCSBCHHHHHHHHHHSGGGHHHHHHHHSGGGSB
T ss_pred CCcCceEEEEecCCCceeeeecCCCccccCCHHHHHHHHHHhCCCCccCCCCHHHHHHHHHhChhhhhhHHHhhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCcccccccceEEEEeCCCCeEEEEEEEEeCCCCCCCCHHHHHHhhCCCCChhHHHHHHHHhcCCCceEEEEEEEeCc
Q psy15197 633 DGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLYDNIAKGNFPSWTFYIQVMTF 712 (902)
Q Consensus 633 ~s~~~~~~~s~~tf~~~n~~G~~~~vk~~~~p~~g~~~l~~~ea~~~~~~~~d~l~~dL~~~i~~g~~p~w~l~vQ~~~~ 712 (902)
.||++|+|||+|||+|+|++|+.+||||||+|.+|+++|+++||.++++.++|||++||+++|++|++|+|+|+||+|++
T Consensus 199 ~syr~m~g~g~htf~~vn~~G~~~~VKfh~~P~~Gv~~L~~~ea~~~~g~d~d~~~~DL~~~I~~g~~p~w~l~VQl~~~ 278 (509)
T 2xq1_A 199 ASYRTMNGYSGHTYKWYNSKGEWVYVQVHFIANQGVHNLLDEEAGRLAGEDPDHSTRDLWEAIEKGDYPSWECYIQTMTL 278 (509)
T ss_dssp SCSTTCCEECCSCEEEECTTSCEEEEEEEEEETTCCCBCCHHHHHHHHHHCTTHHHHHHHHHHHHTCCCEEEEEEEEECH
T ss_pred CChhhccCccccceeeecCCCCEEEEEEEEEeCCCCCCCCHHHHHHhcCCChhHHHHHHHHHHHcCCCceEEEEEEeecH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhccCCCCCCCCccccCCCCCCcEeeEEEEecCCCCCchhhhcccccCCCCCCCcccCCCCchhhhhhhhhHHHhhhhc
Q psy15197 713 EEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNYYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRL 792 (902)
Q Consensus 713 ~d~~~~~~~i~D~Tk~Wpe~~~p~~~vG~l~l~~~~~~~~~~~eq~aF~P~~~v~Gi~~s~Dp~lq~R~~aY~~s~~~R~ 792 (902)
+|+.+|+|||+|+||+|||+++|+++||+|+||+|++|+|++|||+||+|||+||||+||+|||||+|+|||+|||++|+
T Consensus 279 ~d~~~~~f~~~D~Tk~WPe~~~P~i~VG~L~Lnrnp~n~fae~EqlaF~P~~~vpGI~pS~D~lLq~R~faY~ds~r~Rl 358 (509)
T 2xq1_A 279 EQSKKLPFSVFDLTKVWPHKDFPLRHFGRFTLNENPKNYYAETEQIAFSPSHTVPGMEPSNDPVLQSRLFSYPDTHRHRL 358 (509)
T ss_dssp HHHTTCSSCTTCTTCCCCTTTSCCEEEEEEEEEECCSCHHHHTTTCCCCTTCCCTTEEECSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHhcCCCCCCcCcccCCcccCCceEeEEEEECCCccchhhhhhhhhcCccccCCCcCCCCChHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCcc-CCCcCCCCCccc-cCCCCCCccccCCCCC----CCCCCC--CCCCCcceeeeEEeeccC-CCC
Q psy15197 793 GANFNQIPVNCPYRVR-VANYQRDAPMAI-DNQNGAPNYYPNSFKG----PEPTPR--GAWSTYNATGDVKRYKTE-DED 863 (902)
Q Consensus 793 g~N~~qlpvN~p~~~~-~~~~~rdG~m~~-~~~~~~~nY~pns~~~----~~~~~~--~~~~~~~~~g~~~~~~~~-~~d 863 (902)
|+||+|||||||+|+. ++||||||+|++ .|+++.|||+|||+++ |.+.+. +.++ +++|.+.++.+. ++|
T Consensus 359 g~N~~qlPvN~P~~~~~~~~~~rdG~m~~~~~~~~~~~y~pn~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~ 436 (509)
T 2xq1_A 359 GPNYHQIPVNCPLKSGSFNPINRDGPMCVDGNLGGTPNYANAYNCPIQYAVSPKASGNKPDE--KYTGEVVPYHWEHTDY 436 (509)
T ss_dssp CTTGGGSGGGSCCSSCCCCTTCCCCTTCCSCTTTTCCSSTTCTTCCCBCCCC------CCCC--CEEECCEEECCCCCGG
T ss_pred ccccccCCccCCCCccccCCcccccccccccCCCCcccccccccCCCCCCCcCCCcCCcCCC--CcccceEeecCCCCcc
Confidence 9999999999999943 999999999999 5779999999999987 344444 4443 569999999876 789
Q ss_pred CccchHHHHhhcC--CHHHHHHHHHHHHHHhcCCChhhhcC
Q psy15197 864 NFSQPRILWSNVL--DDAARDRMTTNIASVLKLAAPFIQIL 902 (902)
Q Consensus 864 df~Q~~~~~~~~~--~~~ek~~li~n~~~~l~~~~~~I~~~ 902 (902)
||+|||+||+ +| ++.||+|||+|++++|++|+++||+|
T Consensus 437 ~~~q~~~~~~-~~~~~~~~~~~l~~n~~~~l~~~~~~i~~~ 476 (509)
T 2xq1_A 437 DYFQPKMFWK-VLGRTPGEQESLVKNVANHVSAADEFIQDR 476 (509)
T ss_dssp GGHHHHHHHH-HTTSSTTHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred hhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 9999999998 89 99999999999999999999899875
No 12
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=100.00 E-value=8.4e-117 Score=1037.74 Aligned_cols=424 Identities=34% Similarity=0.586 Sum_probs=398.6
Q ss_pred eeccccCCCCCCCCcccce-eee--eeecccCCcccccc-eecchhhhhhhheecccCceeeEEEEEeeccCCCCCCCCC
Q psy15197 477 VGFLLSELSHPCPVSSKFE-ARI--VVFNITTPITIGYP-VTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTN 552 (902)
Q Consensus 477 kG~vL~~~~~~~~~~~~F~-a~i--rvvHakg~ga~G~f-v~~~is~~~~A~if~~~gk~tpv~vRFS~~~g~~~~~D~~ 552 (902)
+|.+|....+....-..|. ++| |++||||.|++|+| ++++++.+|+|++|+.+|++|||++||||++|++|++|++
T Consensus 35 ~Gp~ll~D~~l~ekl~hFdreripeR~vHAKG~ga~G~F~vt~d~~~~t~A~~F~~~Gk~tPv~vRFStv~G~~gs~Dt~ 114 (688)
T 2iuf_A 35 RGATLLQDFIFREKIQRFDHERVPERAVHARGTGAHGTFTSYGDWSNLTAASFLSAEGKETPMFTRFSTVAGSRGSADTA 114 (688)
T ss_dssp TCCBCTTCHHHHHHHHHHHTCCCCCCSSCCSEEEEEEEEEESSCCTTTCCCGGGSSTTCEEEEEEEEECSSCCTTCCTTS
T ss_pred CCChhhhHHHHHHHHhhcccCCCccccccCCcceeEEEEEECCCchHhhhhhhhcCCCceEEEEEEccCCCCCCCCCccc
Confidence 5677776655554455675 555 99999999999999 9999999999999999999999999999999999999999
Q ss_pred CCcccceeEEEccCCceeeeccccceeccCChHHHHHHHhhccCCCCCCCCC----chhHHHHHhcCchhHHHHHHHhcC
Q psy15197 553 RDPRGFALKFYTEDGNWDLVGNNTPIFFVRDPFRFIHFIHSQKRNPVTHLRD----WDAFWDFISLLPETTHQVMILFSD 628 (902)
Q Consensus 553 ~d~RG~AiKf~~~eG~~D~v~~n~PvFf~rd~~~F~~~i~a~~~~p~~~~~~----~~~~~~f~~~~pe~~~~~~~~~s~ 628 (902)
||+|||||||||+||||||||||+||||+|||++||+|+|++|++|.|++++ ++++|||++.+||++|+++|+||+
T Consensus 115 rd~RGfAvKfyt~eGn~DlVgnN~PVFfirD~~kFpd~i~a~k~~P~t~~~~~~~a~~~~~df~s~~Pes~h~~~~l~sd 194 (688)
T 2iuf_A 115 RDVHGFATRFYTDEGNFDIVGNNIPVFFIQDAILFPDLIHAVKPRGDNQIPQAATAHDSAWDFFSQQPSVLHTLLWAXAG 194 (688)
T ss_dssp SCCCEEEEEEEETTEEEEEEEESSSSCSCSCGGGHHHHHHHHSCCTTTCCSTTCCCSHHHHHHHHHSGGGHHHHHHHHTG
T ss_pred CCcCceEEEEecCCCCcceeeecCCccccCCHHHHHHHHHHhCCCCCCCCCchhhhHHHHHHHHHhCcchHHHHHHHccC
Confidence 9999999999999999999999999999999999999999999999999999 489999999999999999999999
Q ss_pred CCCCCCcCcccccccceEEEEeCCCCeEEEEEEEEeCCCCCCCCHHHHHHhhCCCCChhHHHHHHHHhcCCCceEEEEEE
Q psy15197 629 RGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLYDNIAKGNFPSWTFYIQ 708 (902)
Q Consensus 629 ~~~p~s~~~~~~~s~~tf~~~n~~G~~~~vk~~~~p~~g~~~l~~~ea~~~~~~~~d~l~~dL~~~i~~g~~p~w~l~vQ 708 (902)
||+|.||++|+|||+|||+|+|++|+.+||||||+|.+|+++|+++||.++++.+||||++||+++|++|++|+|+|+||
T Consensus 195 rg~P~s~r~m~g~g~htf~~vn~~G~~~~VKfh~~P~~G~~~L~~~ea~~~~g~dpd~l~~dL~~~I~~g~~p~w~l~vQ 274 (688)
T 2iuf_A 195 HGIPRSFRHVNGFGVHTFRLVTDDGKTKLVKFHWKGLQGKASFVWEEAQQTAGKNADFXRQDLFQSIQAGRFPEWELGVQ 274 (688)
T ss_dssp GGSBSCGGGCCEEEEEEEEEECTTCCEEEEEEEEEESSCCCBCCHHHHHHHHHHCTTHHHHHHHHHHHTTCCCEEEEEEE
T ss_pred CCCCCCcccCCcccccceEEEccCCCEEEEEEEEEeCCCcCCCCHHHHHHhcCCCcchhhHHHHHHHhcCCCceEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCcchhccCCCCCCCCccccCCCCCCcEeeEEEEecCCCCCchhhhcccccCCCCCCCcccCCCCchhhhhhhhhHHHh
Q psy15197 709 VMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNYYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTH 788 (902)
Q Consensus 709 ~~~~~d~~~~~~~i~D~Tk~Wpe~~~p~~~vG~l~l~~~~~~~~~~~eq~aF~P~~~v~Gi~~s~Dp~lq~R~~aY~~s~ 788 (902)
+|+++|+++|+|||+|+||+|||+++|+++||+|+||+||+|+|++|||++|+|||+||||+||+|||||+|+|||+|||
T Consensus 275 l~~~~d~~~~~~~~~D~Tk~WPe~~~P~~~VG~l~Lnrnp~n~fae~Eq~aF~P~~~vpGI~~S~DplLq~R~fsY~ds~ 354 (688)
T 2iuf_A 275 IMQEQDQLKFGFDLLDPTKIVPEELVPVTILGKMQLNRNPXNYFAETEQVMFQPGHIVRGVDFTEDPLLQGRLFSYLDTQ 354 (688)
T ss_dssp EECGGGTTTTSSCTTCTTCCCCTTTSCEEEEEEEEEEECCSSHHHHTTTCCCCTTCCCTTEECCCCHHHHHHHHHHHHHH
T ss_pred EechHHhhcCCCCCCcCCccCCcccCCceEEEEEEEcCCccchhhhhhhhcccccccCCCcCCCCChHHHhHHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcC-CCCCCCCCCCCCCccCCCcCCCCCccccCCCCCCccccCCCCC--CCCCC-----CCCCCCcce-eeeEEeecc
Q psy15197 789 IHRLG-ANFNQIPVNCPYRVRVANYQRDAPMAIDNQNGAPNYYPNSFKG--PEPTP-----RGAWSTYNA-TGDVKRYKT 859 (902)
Q Consensus 789 ~~R~g-~N~~qlpvN~p~~~~~~~~~rdG~m~~~~~~~~~nY~pns~~~--~~~~~-----~~~~~~~~~-~g~~~~~~~ 859 (902)
+||+| +||+|||||||+|+ |+||||||+|++.++++.|||+|||+++ |.+.+ .+.+++.++ +|.+.|+.+
T Consensus 355 r~Rlgg~N~~qlPvN~P~~~-~~~~~rdG~m~~~~~~~~~~y~pns~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 433 (688)
T 2iuf_A 355 LNRHGGPNFEQLPINRPRAP-IHNNNRDGAGQMFIPLDPNAYSPNTENKGSPKQANETVGKGFFTAPERTASGKLQRTLS 433 (688)
T ss_dssp HHHHSSSCGGGSTTTCCSSC-CCCSCCCCTTCCCCCCCSCCCSSCSTTTTCSCCCCSSSTTCCCCCTTCCCCSCEEECCC
T ss_pred HHhccCCcccccccCCCCCc-cCCccccccccccCCCCCCccccCcCCCCCccccccccCCCcccCccccccCceEEecc
Confidence 99995 99999999999996 9999999999998889999999999986 44333 455666677 899999877
Q ss_pred C-CCCCccchHHHHhhcCCHHHHHHHHHHHHHHhcCCC-hhhhcC
Q psy15197 860 E-DEDNFSQPRILWSNVLDDAARDRMTTNIASVLKLAA-PFIQIL 902 (902)
Q Consensus 860 ~-~~ddf~Q~~~~~~~~~~~~ek~~li~n~~~~l~~~~-~~I~~~ 902 (902)
. ++|||+|||+||+ +|++.||+|||+|++++|++|. ++||+|
T Consensus 434 ~~~~d~~~q~~~~~~-~~~~~~~~~l~~~~~~~l~~~~~~~i~~~ 477 (688)
T 2iuf_A 434 TTFENNWSQPRLFWN-SLVNAQKEFIVDAXRFETSNVSSSVVRDD 477 (688)
T ss_dssp GGGCCCSHHHHHHHH-TSCHHHHHHHHHC-CHHHHTCCCHHHHHH
T ss_pred ccccchhhhHHHHHH-cCCHHHHHHHHHhcchhhcCCCcHHHHHH
Confidence 5 4799999999998 9999999999999999999997 789875
No 13
>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3
Probab=100.00 E-value=1.2e-111 Score=1007.87 Aligned_cols=422 Identities=36% Similarity=0.653 Sum_probs=396.5
Q ss_pred eeccccCCCCCCCCcccce-eee--eeecccCCcccccc-eecchhhhhhhheecccCceeeEEEEEeeccCCCCCCCCC
Q psy15197 477 VGFLLSELSHPCPVSSKFE-ARI--VVFNITTPITIGYP-VTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTN 552 (902)
Q Consensus 477 kG~vL~~~~~~~~~~~~F~-a~i--rvvHakg~ga~G~f-v~~~is~~~~A~if~~~gk~tpv~vRFS~~~g~~~~~D~~ 552 (902)
+|.+|....+....-..|. ++| |++||||.|++|+| ++++++.+|+|++|+.+|++|||++||||++|++|++|+.
T Consensus 43 ~gp~ll~d~~~~ek~~hf~reripeR~vHAKG~ga~G~F~v~~d~~~~t~a~~f~~~Gk~tpv~vRFStv~g~~gs~D~~ 122 (715)
T 1sy7_A 43 IGPSLLEDPFARERIMRFDHERIPERVVHARGSGAFGKFKVYESASDLTMAPVLTDTSRETPVFVRFSTVLGSRGSADTV 122 (715)
T ss_dssp EEEECTTCHHHHHHHHHHHTCCCCCCSSSCSEEEEEEEEEESSCCTTTCCCGGGTCSSCCEEEEEEEECSSSCTTSCTTS
T ss_pred CCchhHHHHHHHHHHhhhccCCCCccccCCCceeEEEEEEECCCchHhhhchhhcCCCceEEEEEEeccCCCCCCCCccc
Confidence 5556766555444344565 455 99999999999999 9999999999999999999999999999999999999999
Q ss_pred CCcccceeEEEccCCceeeeccccceeccCChHHHHHHHhhccCCCCCCCCCc----hhHHHHHhcCchhHHHHHHHhcC
Q psy15197 553 RDPRGFALKFYTEDGNWDLVGNNTPIFFVRDPFRFIHFIHSQKRNPVTHLRDW----DAFWDFISLLPETTHQVMILFSD 628 (902)
Q Consensus 553 ~d~RG~AiKf~~~eG~~D~v~~n~PvFf~rd~~~F~~~i~a~~~~p~~~~~~~----~~~~~f~~~~pe~~~~~~~~~s~ 628 (902)
||+|||||||||+||||||||||+||||+|||++|++|+|++|++|.|+++++ +++|||++.+||++||++|++|+
T Consensus 123 rd~RGfAvKf~t~eGn~Dlv~nN~PvFfird~~~F~~~i~a~k~~p~t~~~~~~~~~~~~~df~~~~Pes~h~~~~~~sd 202 (715)
T 1sy7_A 123 RDVRGFAVKFYTEEGNWDLVGNNIPVFFIQDAIKFPDVIHAGKPEPHNEVPQAQSAHNNFWDFQFNHTEATHMFTWAMSD 202 (715)
T ss_dssp SSCCEEEEEEEETTEEEEEEEESSSSCSCSSGGGHHHHHHHHSCBTTTTBCTTCCCSHHHHHHHHHCGGGHHHHHHHTSG
T ss_pred CCcCceeEEEecCCCCcceeeeCCCccccCCHHHHHHHHHHcCCCCccCCCCcccchhHHHHHHhhCchhHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999984 89999999999999999999999
Q ss_pred CCCCCCcCcccccccceEEEEeCCCCeEEEEEEEEeCCCCCCCCHHHHHHhhCCCCChhHHHHHHHHhcCCCceEEEEEE
Q psy15197 629 RGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLYDNIAKGNFPSWTFYIQ 708 (902)
Q Consensus 629 ~~~p~s~~~~~~~s~~tf~~~n~~G~~~~vk~~~~p~~g~~~l~~~ea~~~~~~~~d~l~~dL~~~i~~g~~p~w~l~vQ 708 (902)
||+|.||++|+|||+|||+|+|++|+.+||||||+|.+|+++|+++||.++++.++|||++||+++|++|++|+|+|+||
T Consensus 203 r~~p~s~r~m~~~g~htf~~vn~~G~~~~vk~~~~p~~g~~~l~~~ea~~~~g~~~d~l~~dL~~~i~~g~~p~w~l~vQ 282 (715)
T 1sy7_A 203 RAIPRSLRMMQGFGVNTYTLINAQGKRHFVKFHWTPELGVHSLVWDEALKLAGQDPDFHRKDLWEAIENGAYPKWKFGIQ 282 (715)
T ss_dssp GGSBSCGGGSCEECCSCEEEECTTSCEEEEEEEEEETTCCCBCCHHHHHHHHHHCTTHHHHHHHHHHHTTCCCEEEEEEE
T ss_pred CCCCcccccccccccCCceeEcCCCcEEEEEeeEEcCCCCcCCCHHHHHHhhCCCccHHHHHHHHHHhcCCCceEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCcchhccCCCCCCCCccccCCCCCCcEeeEEEEecCCCCCchhhhcccccCCCCCCCcccCCCCchhhhhhhhhHHHh
Q psy15197 709 VMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNYYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTH 788 (902)
Q Consensus 709 ~~~~~d~~~~~~~i~D~Tk~Wpe~~~p~~~vG~l~l~~~~~~~~~~~eq~aF~P~~~v~Gi~~s~Dp~lq~R~~aY~~s~ 788 (902)
+|+++|++.|+|||+|+||+|||+++|+++||+|+||+|++|+|++|||++|+|+|+||||++|+|||||+|+|||+|||
T Consensus 283 ~~~~~d~~~~~~~~~D~Tk~Wp~~~~P~~~vG~l~Ln~n~~n~f~e~eq~aF~P~~~vpGI~~S~DplLq~R~fsY~ds~ 362 (715)
T 1sy7_A 283 AIAEEDEHKFDFDILDATKIWPEDLVPVRYIGEMELNRNPDEFFPQTEQIAFCTSHVVNGIGFSDDPLLQGRNFSYFDTQ 362 (715)
T ss_dssp EEEGGGTTCSSSCTTCTTCCCCTTTSCCEEEEEEEEEECCSCHHHHTTTCCCCTTCCCTTEECCCCTTHHHHHHHHHHTH
T ss_pred eeChHHhccCCCCCCcCCccCCccCCCceEeEEEEEcCCcccchhhhhhhhcCccccCCCcCCCCChHHHHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCCCCCCCCCCccCCCcCCCCCccccCCCCCCccccCCCCCCCCCC------CCCCCCcceeeeEEeeccC-C
Q psy15197 789 IHRLGANFNQIPVNCPYRVRVANYQRDAPMAIDNQNGAPNYYPNSFKGPEPTP------RGAWSTYNATGDVKRYKTE-D 861 (902)
Q Consensus 789 ~~R~g~N~~qlpvN~p~~~~~~~~~rdG~m~~~~~~~~~nY~pns~~~~~~~~------~~~~~~~~~~g~~~~~~~~-~ 861 (902)
++|||+||+|||||||+|+ ++||||||+|++.++++.|||+||+. +...+ .+.+++.+++|.+.|+.+. +
T Consensus 363 ~~Rlg~n~~~lpvn~P~~~-~~~~~rdg~~~~~~~~~~~~y~pn~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 439 (715)
T 1sy7_A 363 ISRLGVNFQELPINRPVCP-VMNFNRDGAMRHTISRGTVNYYPNRF--DACPPASLKEGGYLEYAQKVAGIKARARSAKF 439 (715)
T ss_dssp HHHTCTTGGGSTTTCCSSC-CCCCCCCCTTCCCCCCSSCCSSSCTT--CCSCCCCTTTTCCCCCCCCCCSCCCSCCCGGG
T ss_pred hhhcCCChhhccccCCCcc-ccccchhhhhccccCCCCcccccCCC--cccCccccccCCccCCCccccccEEEeccCCc
Confidence 9999999999999999996 99999999999988889999999954 33222 5566777889998888766 4
Q ss_pred CCCccchHHHHhhcCCHHHHHHHHHHHHHHhcCCC-hhhhcC
Q psy15197 862 EDNFSQPRILWSNVLDDAARDRMTTNIASVLKLAA-PFIQIL 902 (902)
Q Consensus 862 ~ddf~Q~~~~~~~~~~~~ek~~li~n~~~~l~~~~-~~I~~~ 902 (902)
+|||+|||+||+ +|++.||+|||+|++++|++|. ++||+|
T Consensus 440 ~~~~~q~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ 480 (715)
T 1sy7_A 440 KEHFSQAQLFYN-SMSPIEKQHMINAFGFELDHCEDPVVYGR 480 (715)
T ss_dssp GCCSHHHHHHHH-HSCHHHHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred cchhhhHHHHHH-cCCHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 799999999998 8999999999999999999997 789875
No 14
>3e4w_A Putative uncharacterized protein; heme enzyme, catalase, peroxidase, oxidoreductase; HET: HEM; 1.80A {Mycobacterium avium subsp} PDB: 3e4y_A*
Probab=100.00 E-value=4.2e-86 Score=721.55 Aligned_cols=280 Identities=21% Similarity=0.347 Sum_probs=272.6
Q ss_pred eeecccCCcccccc-eecchhhhhhhheecccCceeeEEEEEeeccCCCCCCCCCCCcccceeEEEccCCc-eeeecccc
Q psy15197 499 VVFNITTPITIGYP-VTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGN-WDLVGNNT 576 (902)
Q Consensus 499 rvvHakg~ga~G~f-v~~~is~~~~A~if~~~gk~tpv~vRFS~~~g~~~~~D~~~d~RG~AiKf~~~eG~-~D~v~~n~ 576 (902)
|++||||.|++|+| ++++++.+|+|++|+ |++|||++||||++|++|++|++||+||||||||++||| |||||||+
T Consensus 32 R~vHAKG~~a~G~F~v~~d~~~~t~a~~f~--g~~tpv~vRFSt~~g~~g~~D~~rd~RGfAvKf~t~eG~~~Dlv~nN~ 109 (320)
T 3e4w_A 32 RALHAKGTLYRGTFTATRDAVMLSAAPHLD--GSTVPALIRFSNGSGNPKQRDGAPGVRGMAVKFTLPDGSTTDVSAQTA 109 (320)
T ss_dssp CSSSCSEEEEEEEEEECTTGGGTCCCGGGS--SCEEEEEEEEEESSSCTTCCTTSSCCEEEEEEEECTTSCEEEEEEESC
T ss_pred ccCCCCeeeEEEEEEECCCchHHHhccccC--CceeEEEEEeccCCCCCCCCccCCCCCceEEEEEcCCCCeEeeeeccc
Confidence 89999999999999 999999999999994 899999999999999999999999999999999999996 99999999
Q ss_pred ceeccCChHHHHHHHhhccCCCCCCCCCchhHHHHHhcCchhHHHHHHHhcCCCCCCCcCcccccccceEEEEeCCCCeE
Q psy15197 577 PIFFVRDPFRFIHFIHSQKRNPVTHLRDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPV 656 (902)
Q Consensus 577 PvFf~rd~~~F~~~i~a~~~~p~~~~~~~~~~~~f~~~~pe~~~~~~~~~s~~~~p~s~~~~~~~s~~tf~~~n~~G~~~ 656 (902)
||||+|||++|++|+|++|++ +++++++|||++.+||++|+++|+|+++|+|.||++|+|||+|||+|+|++|+.+
T Consensus 110 PvFfird~~~F~~~i~a~k~~----~~d~~~~~df~~~~Pes~h~~~~l~s~rg~p~s~~~~~~~s~htf~~~n~~G~~~ 185 (320)
T 3e4w_A 110 RLLVSSTPEGFIDLLKAMRPG----LTTPLRLATHLLTHPRLLGALPLLREANRIPASYATTEYHGLHAFRWIAADGSAR 185 (320)
T ss_dssp SSCSCSSHHHHHHHHHHTSSS----TTHHHHHHHHHHHCHHHHTTHHHHHHHTCEESCGGGSCEEEEEEEEEECTTSCEE
T ss_pred cceecCCHHHHhHHHHhhCCC----CCCHHHHHHHHHhCHhHHHHHHHHhccCCCCCCcccCCccccccEEEEcCCCCEE
Confidence 999999999999999999976 7899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeCCCCCCCCHHHHHHhhCCCCChhHHHHHHHHhcCCCceEEEEEEEeCcchhccCCCCCCCCccccCCCCCCc
Q psy15197 657 YCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLYDNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPL 736 (902)
Q Consensus 657 ~vk~~~~p~~g~~~l~~~ea~~~~~~~~d~l~~dL~~~i~~g~~p~w~l~vQ~~~~~d~~~~~~~i~D~Tk~Wpe~~~p~ 736 (902)
||||||+|.+|+++|+++||. +.++|||++||+++|++|++ +|+|+||+|+++| +|+|+||+|||+ |+
T Consensus 186 ~vK~~~~p~~g~~~l~~~ea~---~~~pd~l~~dL~~~i~~g~~-~w~l~vQ~~~~~d------~~~D~Tk~Wpe~--P~ 253 (320)
T 3e4w_A 186 FVRYHLVPTAAEEYLSASDAR---GKDPDFLTDELAARLQDGPV-RFDFRVQIAGPTD------STVDPSSAWQST--QI 253 (320)
T ss_dssp EEEEEEEESSCCCEECHHHHH---TSCTTHHHHHHHHHHHHSCE-EEEEEEEECCTTC------CSSCTTSCCCCC--CE
T ss_pred EEEEEEEeCCCCCCCCHHHhc---cCCccHHHHHHHHHHHhCCc-cEEEEEEecCCCC------cCCCCCCccCCC--CC
Confidence 999999999999999999986 67999999999999999998 9999999999877 488999999998 99
Q ss_pred EeeEEEEecCCCCCchhhhcccccCCCCCCCcccCCCCchhhhhhhhhHHHhhhhcCCCC
Q psy15197 737 LPVGHMVLDKNPGNYYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGANF 796 (902)
Q Consensus 737 ~~vG~l~l~~~~~~~~~~~eq~aF~P~~~v~Gi~~s~Dp~lq~R~~aY~~s~~~R~g~N~ 796 (902)
++||+|+||+|++|+|++|||+||+|||+||||+||+|||||+|++||+|||+||+|.|-
T Consensus 254 ~~VG~l~Ln~n~~n~f~e~Eq~aF~P~~~vpGi~ps~D~llq~R~~aY~ds~r~Rlg~n~ 313 (320)
T 3e4w_A 254 VTVGTVTITGPDTEREHGGDIVVFDPMRVTDGIEPSDDPVLRFRTLVYSASVKLRTGVDR 313 (320)
T ss_dssp EEEEEEEEEEECCSSSSTTCCCCCCTTCCCTTEEECSCHHHHHHHHHHHHHHHHHHSCCC
T ss_pred EEeEEEEECCCCccchhcccceeeeccccCCccCCCCChHHHhHhHHHHHHHHhhcCCCC
Confidence 999999999999999999999999999999999999999999999999999999999985
No 15
>1u5u_A Allene oxide synthase-lipoxygenase protein; catalase, heme, eicosanoid, fusion PR lyase; HET: HEM; 2.00A {Plexaura homomalla} SCOP: e.5.1.2
Probab=100.00 E-value=2.4e-74 Score=640.40 Aligned_cols=277 Identities=19% Similarity=0.279 Sum_probs=256.0
Q ss_pred ee-ecccCCcccccc-eecchhhhhhhheecccCceeeEEEEEeeccCCCCCCCCC-CCcccceeEEEcc--CCceeeec
Q psy15197 499 VV-FNITTPITIGYP-VTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTN-RDPRGFALKFYTE--DGNWDLVG 573 (902)
Q Consensus 499 rv-vHakg~ga~G~f-v~~~is~~~~A~if~~~gk~tpv~vRFS~~~g~~~~~D~~-~d~RG~AiKf~~~--eG~~D~v~ 573 (902)
|+ +||||.|++|+| ++++ +.+|+|++|+ +|++|||++||||+ |++|+. ||+||||||||++ +|||||||
T Consensus 63 R~~vHAKG~ga~G~F~v~~d-~~~t~a~~F~-~gk~tpv~vRFSt~----gs~D~~~rd~RGfAvKf~t~d~~g~~Dlv~ 136 (374)
T 1u5u_A 63 RRATHTVGTGGIGEITIVND-PKFPEHEFFT-AGRTFPARLRHANL----KYPDDAGADARSFSIKFADSDSDGPLDIVM 136 (374)
T ss_dssp SCSSSCSEEEEEEEEEECSS-CCSCCCSSSC-TTCEEEEEEEEEBS----SCSCTTSEECBEEEEESSSSSSCCSCEEEE
T ss_pred cccCCCCeeeEEEEEEECCC-chhhcccccC-CCCeeeEEEEecCC----CCCCCCCCCCCeEEEEEEecCCCCceEEEe
Confidence 67 999999999999 9999 9999999996 59999999999999 788988 9999999999999 89999999
Q ss_pred cc---cceeccCChHHHHHHHhhccCCCCCCCCCchhHHHHHhcCchhHHHHHHHhcCCCCCCCcCcccccccceEEEEe
Q psy15197 574 NN---TPIFFVRDPFRFIHFIHSQKRNPVTHLRDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVN 650 (902)
Q Consensus 574 ~n---~PvFf~rd~~~F~~~i~a~~~~p~~~~~~~~~~~~f~~~~pe~~~~~~~~~s~~~~p~s~~~~~~~s~~tf~~~n 650 (902)
|| +||||+||+++| + ++++ ++++|+|++.+||++|++ ++++|++|.||++|+|||+|||+|+|
T Consensus 137 nNg~~~PvFfird~~~F---i-a~k~--------p~~~~df~~~~Pes~~~~--l~s~r~~P~s~~~~~y~s~htf~~vn 202 (374)
T 1u5u_A 137 NTGEANIFWNSPSLEDF---V-PVEE--------GDAAEEYVYKNPYYYYNL--VEALRRAPDTFAHLYYYSQVTMPFKA 202 (374)
T ss_dssp EESSSCSCCSHHHHHHH---T-TCCT--------THHHHHHHTTCHHHHHHH--HHHCEESCSCGGGCCEECCSCEEEEC
T ss_pred ecCCcccceecCCHHHH---H-hcCC--------hHHHHHHHhhCHHHHHHH--HhCcCCCCCCcccCCccccceEEEEC
Confidence 99 999999999999 4 6654 589999999999999986 78999999999999999999999999
Q ss_pred CCCCeEEEEEEEEeC-----CCCC--CCCHHHHH--------HhhCCCCChhHHHHHHHHhcCCCceEEEEEEEeC--cc
Q psy15197 651 KDNEPVYCKFHFRTD-----QGIK--NISPQTAT--------KLAATDPDYSIRDLYDNIAKGNFPSWTFYIQVMT--FE 713 (902)
Q Consensus 651 ~~G~~~~vk~~~~p~-----~g~~--~l~~~ea~--------~~~~~~~d~l~~dL~~~i~~g~~p~w~l~vQ~~~--~~ 713 (902)
++|+.+||||||+|. ||++ +|+++|+. ++++.++|||++||+++|++|+ |+|+|+||+|+ ++
T Consensus 203 ~~G~~~~vK~~~~P~~~~~~~g~~~~~l~~ee~~~~~~~~r~~~~~~~~d~l~~dL~~~I~~g~-~~w~l~vQl~~~~~~ 281 (374)
T 1u5u_A 203 KDGKVRYCRYRALPGDVDIKEEDESGRLTEEEQRKIWIFSRHENEKRPDDYLRKEYVERLQKGP-VNYRLQIQIHEASPD 281 (374)
T ss_dssp TTCCEEEEEEEEEESSSCCCGGGCTTCCCHHHHTTTTCCSCCTTCCSCTTHHHHHHHHHHHHSC-EEEEEEEEEEECCTT
T ss_pred CCCCEEEEEEEEEeCCcccccCcccCCCCHHHHhhccccccccccCCCccHHHHHHHHHHHcCC-ceEEEEEEEecCCcc
Confidence 999999999999999 8886 99999986 3678899999999999999999 89999999999 66
Q ss_pred hhccCCCCCCCCccccCCCCCCcEeeEEEEecCCCCCchhhhcccccCCCCCCCcccCC-----CC--chhhhhhhhhHH
Q psy15197 714 EAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNYYAEIEQLAFNPNNLIPGIEPT-----PD--KMLQGRLHSYID 786 (902)
Q Consensus 714 d~~~~~~~i~D~Tk~Wpe~~~p~~~vG~l~l~~~~~~~~~~~eq~aF~P~~~v~Gi~~s-----~D--p~lq~R~~aY~~ 786 (902)
|+ +||+|+||+|||+++|+++||+|+||+|+++. +|||++|+|||++|||+|| +| ||||+|++||+|
T Consensus 282 d~----~~~~D~Tk~Wpe~~~P~i~VG~l~Ln~~~p~~--e~EqlaF~P~~~vpGi~~s~pSs~~D~~~llq~R~~aY~d 355 (374)
T 1u5u_A 282 DT----ATIFHAGILWDKETHPWFDLAKVSIKTPLSPD--VLEKTAFNIANQPASLGLLEAKSPEDYNSIGELRVAVYTW 355 (374)
T ss_dssp CC----GGGGCTTSCCCTTTSCCEEEEEEEEEEECCHH--HHHHCCCCTTCCCTTSCCCCCSSSSSTTHHHHHHHHHHHH
T ss_pred cc----cCcccCceeCCcccCCcEEEEEEEECCCCCch--hhhHhhcCccccCCCccccccccCCCcchHHHHHHHHHHH
Confidence 65 47999999999999999999999999995543 8999999999999999555 99 999999999999
Q ss_pred HhhhhcCCCCCCCCCC
Q psy15197 787 THIHRLGANFNQIPVN 802 (902)
Q Consensus 787 s~~~R~g~N~~qlpvN 802 (902)
||++|+|.|+.|||.-
T Consensus 356 s~~~R~g~n~~~~~~~ 371 (374)
T 1u5u_A 356 VQHLRKLKIGSLVPAG 371 (374)
T ss_dssp HHHHHHHTTTCCC---
T ss_pred HHHhhcccchhccCCc
Confidence 9999999999999964
No 16
>3dy5_A Allene oxide synthase-lipoxygenase protein; fusion protein, BI-functional enzyme, dioxygenase, fatty ACI biosynthesis, heme, iron; HET: HEM; 3.51A {Plexaura homomalla}
Probab=100.00 E-value=6.5e-67 Score=644.96 Aligned_cols=298 Identities=18% Similarity=0.247 Sum_probs=263.4
Q ss_pred eecccCCcccccc-eecchhhhhhhheecccCceeeEEEEEeeccCCCCCCCCCCCcccceeEEEccC--Cceeeecccc
Q psy15197 500 VFNITTPITIGYP-VTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTED--GNWDLVGNNT 576 (902)
Q Consensus 500 vvHakg~ga~G~f-v~~~is~~~~A~if~~~gk~tpv~vRFS~~~g~~~~~D~~~d~RG~AiKf~~~e--G~~D~v~~n~ 576 (902)
++||||.|++|+| +++++ .+|+|++|+. |++|||++||||++| .+|+.||+|||||||||+| |||||||||+
T Consensus 65 ~vHAKG~ga~G~F~v~~d~-~~t~a~~F~~-gk~tpv~vRFStv~~---~Dd~~rd~RGfAvKf~t~e~Ggn~DlV~nN~ 139 (1066)
T 3dy5_A 65 ATHTVGTGGIGEITIVNDP-KFPEHEFFTA-GRTFPARLRHANLKY---PDDAGADARSFSIKFADSDSDGPLDIVMNTG 139 (1066)
T ss_dssp SSSCSBCCEEEEEEECSSC-CSCCCSSSCT-TCCEEEEEECBBSSC---SCTTSCCBBEEEEESSSSSSCCSCEEEEESS
T ss_pred cccCCeeeEEEEEEECCCH-HHHhhhhhcC-CCEEEEEEEcCCCCC---CCCCCCCCceEEEEEEeCCCCceeeeeeccC
Confidence 5999999999999 99999 9999999986 999999999999975 3345799999999999999 6999999999
Q ss_pred ceeccCChHHHHHHHhhccCCCCCCCCCchhHHHHHhcCchhHHHHHHHhcCCCCCCCcCcccccccceEEEEeCCCCeE
Q psy15197 577 PIFFVRDPFRFIHFIHSQKRNPVTHLRDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPV 656 (902)
Q Consensus 577 PvFf~rd~~~F~~~i~a~~~~p~~~~~~~~~~~~f~~~~pe~~~~~~~~~s~~~~p~s~~~~~~~s~~tf~~~n~~G~~~ 656 (902)
||||+|||++|++|+|+++ |+++|||++.+||+ +++|++++||+|+||++|+|||+|||+|+|++|+.+
T Consensus 140 PvFfird~~~F~~fi~a~k---------p~~~~df~~~~Pes--~~~~l~sdr~~P~s~~~m~~~s~htf~~~n~~G~~~ 208 (1066)
T 3dy5_A 140 EANIFWNSPSLEDFVPVEE---------GDAAEEYVYKNPYY--YYNLVEALRRAPDTFAHLYYYSQVTMPFKAKDGKVR 208 (1066)
T ss_dssp SSCSCCSHHHHHTTTTCCT---------THHHHHHHTSSHHH--HHTHHHHBCSSCSCGGGCCEECCSCEEEECTTCCEE
T ss_pred CccccCCHHHHHHHHHhcC---------chHHHHHHhhCcHH--HHHHHhccCCCCCCcccCCcccccceEEEcCCCCEE
Confidence 9999999999999999996 27899999999999 889999999999999999999999999999999999
Q ss_pred EEEEEEEeC------CCCC-CCCHHHHH--------HhhCCCCChhHHHHHHHHhcCCCceEEEEEEEeCcchhccCCCC
Q psy15197 657 YCKFHFRTD------QGIK-NISPQTAT--------KLAATDPDYSIRDLYDNIAKGNFPSWTFYIQVMTFEEAKTYRWN 721 (902)
Q Consensus 657 ~vk~~~~p~------~g~~-~l~~~ea~--------~~~~~~~d~l~~dL~~~i~~g~~p~w~l~vQ~~~~~d~~~~~~~ 721 (902)
||||||+|. +|++ +|+++||. ++++.+||||++||+++|++|+ |+|+|+||+|++++.+ +++
T Consensus 209 ~VKf~~~P~~~~~~~~G~~~~l~~ee~~~~~~~~r~~~~~~~pd~l~~dL~~~i~~g~-p~w~l~vQl~~~~~~d--~~d 285 (1066)
T 3dy5_A 209 YCRYRALPGDVDIKEEDESGRLTEEEQRKIWIFSRHENEKRPDDYLRKEYVERLQKGP-VNYRLQIQIHEASPDD--TAT 285 (1066)
T ss_dssp EEEEEEEECSSCCCGGGCTTCCCHHHHHTCSCCSCCSSCCCCTTTTTTTTTTTTTSSC-EEEEEEEEEEECCTTC--CGG
T ss_pred EEEEEEEECCccccccccccCCCHHHHhhccccccccccCCCccHHHHHHHHHHHcCC-ceEEEEEEEecCCcCC--CCC
Confidence 999999994 6788 79999875 5778999999999999999999 8999999999833332 457
Q ss_pred CCCCccccCCCCCCcEeeEEEEecCCCCCchhhhcccccCCCCCCCcccCCCCc-------hhhhhhhhhHHHhhhhcCC
Q psy15197 722 PFDVTKIWPQSDFPLLPVGHMVLDKNPGNYYAEIEQLAFNPNNLIPGIEPTPDK-------MLQGRLHSYIDTHIHRLGA 794 (902)
Q Consensus 722 i~D~Tk~Wpe~~~p~~~vG~l~l~~~~~~~~~~~eq~aF~P~~~v~Gi~~s~Dp-------~lq~R~~aY~~s~~~R~g~ 794 (902)
|+|+||+|||+++|+++||+|+||+|++| ++|||+||+|||+||||++|+|+ |+++|+.+|+.|+++|+-.
T Consensus 286 ~~D~Tk~Wp~~~~P~i~VG~l~Lnrn~~n--ae~Eq~aF~P~~~vpGi~~s~dks~~plgsI~raR~~vY~~s~~~R~~~ 363 (1066)
T 3dy5_A 286 IFHAGILWDKETHPWFDLAKVSIKTPLSP--DVLEKTAFNIANQPASLGLLEAKSPEDYNSIGELRVAVYTWVQHLRKLK 363 (1066)
T ss_dssp GGCTTSCCCGGGSCCEEEEEEEEEEECCH--HHHTTCCCCTTCCCTTSCCCCCSSTTSTTHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCeECCcccCceEEEEEEEECCCCCc--chhhhhccCccccCCCccCCCccccCCccHHHHHHHHHHHHHHHhhhcc
Confidence 89999999999999999999999999998 78999999999999999999753 9999999999999999876
Q ss_pred CCCCCCCCCCCCc---cCCCcCCCCCcc
Q psy15197 795 NFNQIPVNCPYRV---RVANYQRDAPMA 819 (902)
Q Consensus 795 N~~qlpvN~p~~~---~~~~~~rdG~m~ 819 (902)
+- .||...+.+. .|.+=.+-|++.
T Consensus 364 ~g-~l~~~~~~~~Y~V~V~TG~~~~AGT 390 (1066)
T 3dy5_A 364 IG-SLVPAGQNAIYNVEVETGDREHAGT 390 (1066)
T ss_dssp SS-CC-----CCEEEEEEEECCSTTCCC
T ss_pred cc-cCCcccCceeEEEEEEECCCCCCCC
Confidence 53 6666545442 244445555554
No 17
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=100.00 E-value=2.3e-51 Score=473.48 Aligned_cols=345 Identities=41% Similarity=0.754 Sum_probs=317.8
Q ss_pred CCCcceEEEEEecCCCChhHHHhHHHHhccccchhhhccchhhhhhcccccceeeeeccccCcccccCCccccCCCCCCC
Q psy15197 22 GGKGRLHLVVIGHVDAGKSTLMGHLLYLMGRVSAREIHKHETESKKLGKQSFMYAWILDETGEESSCEIPVDTTSAGNPV 101 (902)
Q Consensus 22 ~~~~~~~v~v~G~~~~GKstL~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 101 (902)
..+..+||++|||+|+|||||+++|++.++.+.++.+.+++.++++.|+++|+++|++|+.++|
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~e---------------- 76 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEE---------------- 76 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhH----------------
Confidence 3467899999999999999999999999999999999999999999999999999998887765
Q ss_pred CccccccccCCCCCCCCcchhhhhccccccCCCCccchhcccCCCCccccccchhhhccCCCCCCCCCcccccccccccc
Q psy15197 102 DSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFEDRETIIKTIGPHGPVPLEDTYYLDKLFHF 181 (902)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (902)
T Consensus 77 -------------------------------------------------------------------------------- 76 (439)
T 3j2k_7 77 -------------------------------------------------------------------------------- 76 (439)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCcccccccCCCCccccceecccCCccchhhhhhhhhcccccccccccccCCeEEeeeEEEEEECCeEEEEEeCCCc
Q psy15197 182 SGERNPERVVHAKGGGAFGYFEVRKLPAGVVKIEFACLVMRIVPLEGIASALNRGITMDVGQSQFETKTKYITLLDAPGH 261 (902)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~e~~rGiTid~~~~~~~~~~~~i~lIDTPG~ 261 (902)
+++|+|++.....++++++.++|||||||
T Consensus 77 ---------------------------------------------------r~~GiTid~~~~~~~~~~~~~~iiDTPGh 105 (439)
T 3j2k_7 77 ---------------------------------------------------RDKGKTVEVGRAYFETEKKHFTILDAPGH 105 (439)
T ss_pred ---------------------------------------------------hhcCceEEEeEEEEecCCeEEEEEECCCh
Confidence 67899999999999999999999999999
Q ss_pred cchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCC--CchHHHHHHHHHHHH
Q psy15197 262 KDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTV--SWSQDRFQEIVTKLG 339 (902)
Q Consensus 262 ~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~--~~~~~~~~~i~~~l~ 339 (902)
++|...+..+++.+|++|||||++++.+|.+|+...|+.+++.++..++++++|+|+||||+. ++++.+++++.+++.
T Consensus 106 ~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~ 185 (439)
T 3j2k_7 106 KSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLV 185 (439)
T ss_pred HHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccchHHHHHHHHHHHHH
Confidence 999999999999999999999999999988888889999999999999998888999999995 456677888888898
Q ss_pred HhhhhcCCCCC-CceEecCCCccCCCCCCCCCCcccccccCcccHHHHHHhcCCCCCCCCCCceEEEeeEEeeCCCeEEE
Q psy15197 340 AFLKQAGFRDS-DIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNFKTPSRPLTKPLRMSVSDIYKSTGSGYCI 418 (902)
Q Consensus 340 ~~l~~~~~~~~-~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L~~l~~p~~~~~~pl~~~I~~i~~v~g~G~V~ 418 (902)
.+++.+++... .++++++||++|.|+.+++. .++||.|++|++.|+.++++....++|++|+|.++|+ +.|+|+
T Consensus 186 ~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~---~~~w~~g~~L~~~l~~i~~~~~~~~~p~r~~v~~~~~--~~G~v~ 260 (439)
T 3j2k_7 186 PFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD---FCPWYIGLPFIPYLDNLPNFNRSVDGPIRLPIVDKYK--DMGTVV 260 (439)
T ss_pred HHHHHhcccccCCeeEEEeeccCCcccccccc---cccccCchHHHHHHHhCCCCccCCCCCeEEEEEEEEc--CCCeEE
Confidence 89988887542 57999999999999998655 5799999999999999998888889999999999986 789999
Q ss_pred EEEEEeeEeeCCCEEEEccCCcEEEEEEEEEceEeeeeeccCCeEEEeeeccccccceeeccccCCCCCCCCcccceeee
Q psy15197 419 AGRVETGVILAGEKVMVQPQNEVTTVKAVYVDEMSVSAAYAGDNVSVTLLNYDQQNVSVGFLLSELSHPCPVSSKFEARI 498 (902)
Q Consensus 419 ~GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~~~~~v~~a~aGdiv~I~l~~~~~~~i~kG~vL~~~~~~~~~~~~F~a~i 498 (902)
.|+|.+|+|++||.|.+.|.+...+|++|++++.++++|.|||+|+|.+.++...++++|++|+++..+++.+..|+|++
T Consensus 261 ~G~v~~G~l~~Gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~gi~~~~i~rG~vl~~~~~~~~~~~~f~a~v 340 (439)
T 3j2k_7 261 LGKLESGSIFKGQQLVMMPNKHNVEVLGILSDDTETDFVAPGENLKIRLKGIEEEEILPGFILCDPSNLCHSGRTFDVQI 340 (439)
T ss_pred EEEEEeeEEecCCEEEEccCCceEEEEEEEECCeEcCEecCCCcceEEEeccchhhcCCcEEecCCCCCCceeeEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999988887888999999
Q ss_pred eeecccCCcccccc-eecchh
Q psy15197 499 VVFNITTPITIGYP-VTHDIT 518 (902)
Q Consensus 499 rvvHakg~ga~G~f-v~~~is 518 (902)
.++++++.+..||. +.+..+
T Consensus 341 ~~l~~~~~i~~g~~~~~~~~t 361 (439)
T 3j2k_7 341 VIIEHKSIICPGYNAVLHIHT 361 (439)
T ss_pred EEeCCCCcCCCCCEEEEEEec
Confidence 99999988999997 655433
No 18
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=100.00 E-value=5.7e-48 Score=450.74 Aligned_cols=350 Identities=37% Similarity=0.640 Sum_probs=287.5
Q ss_pred CCcceEEEEEecCCCChhHHHhHHHHhccccchhhhccchhhhhhcccccceeeeeccccCcccccCCccccCCCCCCCC
Q psy15197 23 GKGRLHLVVIGHVDAGKSTLMGHLLYLMGRVSAREIHKHETESKKLGKQSFMYAWILDETGEESSCEIPVDTTSAGNPVD 102 (902)
Q Consensus 23 ~~~~~~v~v~G~~~~GKstL~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 102 (902)
.+..+||+|+||+|+|||||+++|++.++.++.+++.+.+.++.+.|+++|.++|++|...+|
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e----------------- 92 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEE----------------- 92 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC---------------------------------------
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhH-----------------
Confidence 577899999999999999999999999999999999999999999999999999998887765
Q ss_pred ccccccccCCCCCCCCcchhhhhccccccCCCCccchhcccCCCCccccccchhhhccCCCCCCCCCccccccccccccc
Q psy15197 103 SETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFEDRETIIKTIGPHGPVPLEDTYYLDKLFHFS 182 (902)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (902)
T Consensus 93 -------------------------------------------------------------------------------- 92 (483)
T 3p26_A 93 -------------------------------------------------------------------------------- 92 (483)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccccccCCCCccccceecccCCccchhhhhhhhhcccccccccccccCCeEEeeeEEEEEECCeEEEEEeCCCcc
Q psy15197 183 GERNPERVVHAKGGGAFGYFEVRKLPAGVVKIEFACLVMRIVPLEGIASALNRGITMDVGQSQFETKTKYITLLDAPGHK 262 (902)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~e~~rGiTid~~~~~~~~~~~~i~lIDTPG~~ 262 (902)
+++|+|++.....+.++++.++|||||||+
T Consensus 93 --------------------------------------------------~~~GiTi~~~~~~~~~~~~~~~iiDTPG~~ 122 (483)
T 3p26_A 93 --------------------------------------------------RERGVTVSICTSHFSTHRANFTIVDAPGHR 122 (483)
T ss_dssp ----------------------------------------------------CCSSCCCCEEEEECSSCEEEEECCCCCG
T ss_pred --------------------------------------------------hhcCcceEeeeEEEecCCceEEEEECCCcH
Confidence 568899999999999999999999999999
Q ss_pred chHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhh
Q psy15197 263 DFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFL 342 (902)
Q Consensus 263 df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l 342 (902)
+|...+..+++.+|++|||||++++.++.+++...++.+++.++..++++++|||+||+|++++++..++++.+++..++
T Consensus 123 ~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l 202 (483)
T 3p26_A 123 DFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYL 202 (483)
T ss_dssp GGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888888888999999999999988888999999999877778888888888888
Q ss_pred hhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCcccHHHHHHhcC----C--CCCCCCCCceEEEeeEEeeC---C
Q psy15197 343 KQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNFK----T--PSRPLTKPLRMSVSDIYKST---G 413 (902)
Q Consensus 343 ~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L~~l~----~--p~~~~~~pl~~~I~~i~~v~---g 413 (902)
+.+++....++++++||++|.|+.+++.....+.||+|++|+++|+.+. + |....+.|++|+|.++|+++ +
T Consensus 203 ~~~g~~~~~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~~L~~i~~~~~~~~p~~~~~~p~r~~v~~v~~~~~~~g 282 (483)
T 3p26_A 203 VDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLFSVLEIIPSKKTSN 282 (483)
T ss_dssp HHHTCCGGGEEEEECCSSSCTTSSSSCCCHHHHHHCCSCCHHHHHHHHHHHHHHHHTTCCSSSCCEEEEEEEEC---CCS
T ss_pred HHcCCCcccceEEEEeeecCCCccccCcccccccccCCCCHHHHHHHHHhhcccccccccCCCceEEEEEEEEccCCcCC
Confidence 8888865678999999999999998655322378999999999998772 1 45667899999999999988 5
Q ss_pred CeEEEEEEEEeeEeeCCCEEEEccCCcEEEEEEEEEc--------eEeeeeeccCCeEEEeeeccccccceeeccccCCC
Q psy15197 414 SGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYVD--------EMSVSAAYAGDNVSVTLLNYDQQNVSVGFLLSELS 485 (902)
Q Consensus 414 ~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~~--------~~~v~~a~aGdiv~I~l~~~~~~~i~kG~vL~~~~ 485 (902)
.|+|++|+|.+|+|++||.|.+.|.+...+|++|+++ +.++++|.|||+|+|.+.+....++++|++|+++.
T Consensus 283 ~g~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~~~~~~~~~a~aG~~v~~~l~~~~~~di~rG~vl~~~~ 362 (483)
T 3p26_A 283 DLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAASVD 362 (483)
T ss_dssp CCEEEEEEEEESEECTTCEEEEETTTEEEEEEEEEETTTC-----CCEESCEETTCEEEEEEESCCGGGCCTTCEEECTT
T ss_pred CceEEEEEEecceEccCCEEEEeCCCCeEEEEEEEEcCccccccccccccEECCCCEEEEEEEecccccCCceEEEEcCC
Confidence 9999999999999999999999999999999999998 48999999999999999998889999999999988
Q ss_pred C-CCCCcccceeeeeeecccCCcccccc-eecchhh
Q psy15197 486 H-PCPVSSKFEARIVVFNITTPITIGYP-VTHDITH 519 (902)
Q Consensus 486 ~-~~~~~~~F~a~irvvHakg~ga~G~f-v~~~is~ 519 (902)
. ++..+..|+|++.++++++.+..||. +.+..+.
T Consensus 363 ~~~~~~~~~f~a~v~~l~~~~~l~~g~~~~l~~~t~ 398 (483)
T 3p26_A 363 YSSIHSAQCFVLELTTFDMNRPLLPGTPFILFIGVK 398 (483)
T ss_dssp CCCCEECSEEEEEEEECSCSSCBCTTCEEEEEETTE
T ss_pred CCCCceeeEEEEEEEEECCCCCCCCCCEEEEEeCce
Confidence 7 78888999999999988888999997 5554443
No 19
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-48 Score=463.69 Aligned_cols=348 Identities=42% Similarity=0.720 Sum_probs=260.9
Q ss_pred CCcceEEEEEecCCCChhHHHhHHHHhccccchhhhccchhhhhhcccccceeeeeccccCcccccCCccccCCCCCCCC
Q psy15197 23 GKGRLHLVVIGHVDAGKSTLMGHLLYLMGRVSAREIHKHETESKKLGKQSFMYAWILDETGEESSCEIPVDTTSAGNPVD 102 (902)
Q Consensus 23 ~~~~~~v~v~G~~~~GKstL~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 102 (902)
.+..+||+||||+|||||||+++|++.++.+..+++.+.+..+.+.|+++|.++|++|...+|
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E----------------- 236 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEE----------------- 236 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhh-----------------
Confidence 356689999999999999999999999999999999999999999999999999998888765
Q ss_pred ccccccccCCCCCCCCcchhhhhccccccCCCCccchhcccCCCCccccccchhhhccCCCCCCCCCccccccccccccc
Q psy15197 103 SETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFEDRETIIKTIGPHGPVPLEDTYYLDKLFHFS 182 (902)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (902)
T Consensus 237 -------------------------------------------------------------------------------- 236 (592)
T 3mca_A 237 -------------------------------------------------------------------------------- 236 (592)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccccccCCCCccccceecccCCccchhhhhhhhhcccccccccccccCCeEEeeeEEEEEECCeEEEEEeCCCcc
Q psy15197 183 GERNPERVVHAKGGGAFGYFEVRKLPAGVVKIEFACLVMRIVPLEGIASALNRGITMDVGQSQFETKTKYITLLDAPGHK 262 (902)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~e~~rGiTid~~~~~~~~~~~~i~lIDTPG~~ 262 (902)
+++|+|++.....+.++++.++|||||||.
T Consensus 237 --------------------------------------------------~~~GiTid~~~~~~~~~~~~i~iiDTPGh~ 266 (592)
T 3mca_A 237 --------------------------------------------------RARGVTMDVASTTFESDKKIYEIGDAPGHR 266 (592)
T ss_dssp ------------------------------------------------------------------------CCEEESSS
T ss_pred --------------------------------------------------hcCCeeEEeeEEEEEeCCeEEEEEECCChH
Confidence 578999999999999999999999999999
Q ss_pred chHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhh
Q psy15197 263 DFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFL 342 (902)
Q Consensus 263 df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l 342 (902)
+|...+..+++.+|++|||||++.+.++.+|+...|+.+++.++..++++++|||+||||+++++.+.+..+.+++..++
T Consensus 267 ~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~~~~~~~i~~el~~~l 346 (592)
T 3mca_A 267 DFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFL 346 (592)
T ss_dssp EEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccccccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988777776678999999999999998888999999998877788888888888888
Q ss_pred -hhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCcccHHHHHHhcCCCCCCCCCCceEEEeeEEeeCCCeEEEEEE
Q psy15197 343 -KQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNFKTPSRPLTKPLRMSVSDIYKSTGSGYCIAGR 421 (902)
Q Consensus 343 -~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L~~l~~p~~~~~~pl~~~I~~i~~v~g~G~V~~Gr 421 (902)
+..++....++++++||++|.||.+++. ...+.||.|+.|++.|..+.++....+.|++++|.++|++ +.|+|++|+
T Consensus 347 ~~~~g~~~~~~~ii~iSA~~G~gI~e~~~-~~~~~w~~g~~Lle~l~~~~pp~~~~~~p~r~~v~~v~~~-~~g~v~~G~ 424 (592)
T 3mca_A 347 IKMVGFKTSNVHFVPISAISGTNLIQKDS-SDLYKWYKGPTLLSALDQLVPPEKPYRKPLRLSIDDVYRS-PRSVTVTGR 424 (592)
T ss_dssp TTTSCCCGGGEEEEEECSSSCSSSCSCCC-CGGGGTCCSCCHHHHHHTSCCCSCTTTSCCEEEEEEEEEE-TTEEEEEEE
T ss_pred HHhhCCCccceEEEEEecccCcccccccc-cccccccchHHHHHHHHhhccccccccccchheeeEEEec-CCeEEEEEE
Confidence 8888866678999999999999997543 2368999999999999998888888899999999999999 999999999
Q ss_pred EEeeEeeCCCEEEEccCCcEEEEEEEEEceEeee-eeccCCeEEEeeeccccccceeeccccCCCCCCCCcccceeeeee
Q psy15197 422 VETGVILAGEKVMVQPQNEVTTVKAVYVDEMSVS-AAYAGDNVSVTLLNYDQQNVSVGFLLSELSHPCPVSSKFEARIVV 500 (902)
Q Consensus 422 V~sG~Lk~Gd~v~l~p~~~~~~V~sI~~~~~~v~-~a~aGdiv~I~l~~~~~~~i~kG~vL~~~~~~~~~~~~F~a~irv 500 (902)
|.+|+|++||.|.+.|.+...+|++|++++.+++ +|.||++|+|.+.++...++++|++|+++..++.....|++++.+
T Consensus 425 v~~G~l~~Gd~v~i~p~~~~~~V~~i~~~~~~~~~~a~aG~~v~~~l~~i~~~~i~rG~vl~~~~~~~~~~~~f~a~v~~ 504 (592)
T 3mca_A 425 VEAGNVQVNQVLYDVSSQEDAYVKNVIRNSDPSSTWAVAGDTVTLQLADIEVNQLRPGDILSNYENPVRRVRSFVAEIQT 504 (592)
T ss_dssp EEESEEETTCEEEETTTTEEEEEEEEECSSSCSCCEEETTCEEEEEESSSCGGGCCTTCEEECSSSCCEEESEEEEEEEE
T ss_pred EeeeeEccCCEEEEccCCceEEEEEEEEcCccCcceecCCCEEEEEEccccccccceEEEeccCCCCccccCeEEEEEEE
Confidence 9999999999999999999999999999999999 999999999999988889999999999988877778899999999
Q ss_pred ecccCCcccccc-eecchhh
Q psy15197 501 FNITTPITIGYP-VTHDITH 519 (902)
Q Consensus 501 vHakg~ga~G~f-v~~~is~ 519 (902)
++++..+..||. +.+..+.
T Consensus 505 ~~~~~pi~~g~~~~l~~~t~ 524 (592)
T 3mca_A 505 FDIHGPILSGSTLVLHLGRT 524 (592)
T ss_dssp CSCSSCEETTEEEEEECSSC
T ss_pred ECCCccCCCCCEEEEEEcCc
Confidence 988889999997 5554443
No 20
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=100.00 E-value=8.4e-48 Score=446.13 Aligned_cols=346 Identities=44% Similarity=0.739 Sum_probs=309.3
Q ss_pred CCcceEEEEEecCCCChhHHHhHHHHhccccchhhhccchhhhhhcccccceeeeeccccCcccccCCccccCCCCCCCC
Q psy15197 23 GKGRLHLVVIGHVDAGKSTLMGHLLYLMGRVSAREIHKHETESKKLGKQSFMYAWILDETGEESSCEIPVDTTSAGNPVD 102 (902)
Q Consensus 23 ~~~~~~v~v~G~~~~GKstL~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 102 (902)
.+..++|+++||+|||||||+++|++.++.++.+++.+++.++.+.|+++|++++++|+..+|
T Consensus 4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~e----------------- 66 (458)
T 1f60_A 4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAE----------------- 66 (458)
T ss_dssp CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHH-----------------
T ss_pred CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhH-----------------
Confidence 456799999999999999999999999999999999999999999999999999888877655
Q ss_pred ccccccccCCCCCCCCcchhhhhccccccCCCCccchhcccCCCCccccccchhhhccCCCCCCCCCccccccccccccc
Q psy15197 103 SETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFEDRETIIKTIGPHGPVPLEDTYYLDKLFHFS 182 (902)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (902)
T Consensus 67 -------------------------------------------------------------------------------- 66 (458)
T 1f60_A 67 -------------------------------------------------------------------------------- 66 (458)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccccccCCCCccccceecccCCccchhhhhhhhhcccccccccccccCCeEEeeeEEEEEECCeEEEEEeCCCcc
Q psy15197 183 GERNPERVVHAKGGGAFGYFEVRKLPAGVVKIEFACLVMRIVPLEGIASALNRGITMDVGQSQFETKTKYITLLDAPGHK 262 (902)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~e~~rGiTid~~~~~~~~~~~~i~lIDTPG~~ 262 (902)
+++|+|++.....+.++++.++|||||||+
T Consensus 67 --------------------------------------------------r~~GiTi~~~~~~~~~~~~~~~iiDtPGh~ 96 (458)
T 1f60_A 67 --------------------------------------------------RERGITIDIALWKFETPKYQVTVIDAPGHR 96 (458)
T ss_dssp --------------------------------------------------HHTTCCCSCSCEEEECSSEEEEEEECCCCT
T ss_pred --------------------------------------------------HhcCcEEEEEEEEEecCCceEEEEECCCcH
Confidence 567888888888888899999999999999
Q ss_pred chHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhh
Q psy15197 263 DFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFL 342 (902)
Q Consensus 263 df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l 342 (902)
+|...+..++..+|++|||||++++.++.+|+...|+.+++.++..++++++|||+||+|++++++++++++.+++..++
T Consensus 97 ~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l 176 (458)
T 1f60_A 97 DFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFI 176 (458)
T ss_dssp THHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887666666666899999888888988888999999998666777788888888888
Q ss_pred hhcCCCCCCceEecCCCccCCCCCCCCCCcccccccC------------cccHHHHHHhcCCCCCCCCCCceEEEeeEEe
Q psy15197 343 KQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYS------------GPCLLDVIDNFKTPSRPLTKPLRMSVSDIYK 410 (902)
Q Consensus 343 ~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~------------g~~Lle~L~~l~~p~~~~~~pl~~~I~~i~~ 410 (902)
+.+++....++++++||++|.|+.++.. .++||. ++.|++.|+.+++|....+.|++|+|.++|+
T Consensus 177 ~~~g~~~~~~~~i~vSA~~g~nv~~~~~---~~~~~~~~~~~~~tg~~~~~~Ll~~l~~~~~p~~~~~~p~r~~i~~v~~ 253 (458)
T 1f60_A 177 KKVGYNPKTVPFVPISGWNGDNMIEATT---NAPWYKGWEKETKAGVVKGKTLLEAIDAIEQPSRPTDKPLRLPLQDVYK 253 (458)
T ss_dssp HHHTCCGGGCCEEECCTTTCBTTTBCCS---SCTTCCCEEEECSSSEEEESSHHHHHHTSCCCCCCTTSCCEEEEEEEEE
T ss_pred HHcCCCccCceEEEeecccCcCcccccc---cCchhhcccccccccccchHHHHHHhhccCCCcccCCCCcEEEEEEEEE
Confidence 8888754457999999999999998654 367886 5689999999988888889999999999999
Q ss_pred eCCCeEEEEEEEEeeEeeCCCEEEEccCCcEEEEEEEEEceEeeeeeccCCeEEEeeeccccccceeeccccCCCC-CCC
Q psy15197 411 STGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYVDEMSVSAAYAGDNVSVTLLNYDQQNVSVGFLLSELSH-PCP 489 (902)
Q Consensus 411 v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~~~~~v~~a~aGdiv~I~l~~~~~~~i~kG~vL~~~~~-~~~ 489 (902)
+++.|+|++|+|.+|+|++||.|.+.|.+...+|++|++++.++++|.|||+|+|.+.++..+++++|++|+++.. ++.
T Consensus 254 ~~g~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~i~l~gi~~~~i~rG~vl~~~~~~~~~ 333 (458)
T 1f60_A 254 IGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEMHHEQLEQGVPGDNVGFNVKNVSVKEIRRGNVCGDAKNDPPK 333 (458)
T ss_dssp ETTTEEEEEEECCBSCBCTTCEEEEETTTEEEEEEEEEETTEECSCBCTTCEEEEEESSCCTTTSCTTCEEEETTSSCCC
T ss_pred eCCCcEEEEEEEeCCeEcCCCEEEECCCCceEEEeEEEECCeEEEEEcCCCEEEEEEcCCcccccCceeEEecCCCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999998888899999999999875 777
Q ss_pred CcccceeeeeeecccCCcccccc-eecchh
Q psy15197 490 VSSKFEARIVVFNITTPITIGYP-VTHDIT 518 (902)
Q Consensus 490 ~~~~F~a~irvvHakg~ga~G~f-v~~~is 518 (902)
.+..|+|++.+++++..+..||. +.+..+
T Consensus 334 ~~~~f~a~v~~l~~~~~i~~g~~~~~~~~t 363 (458)
T 1f60_A 334 GCASFNATVIVLNHPGQISAGYSPVLDCHT 363 (458)
T ss_dssp CCSEEEEEEEECSCSCCBCTTCCCEEEETT
T ss_pred eeeEEEEEEEEeCCCCCCCCCCEEEEEecc
Confidence 88999999999988888999997 555433
No 21
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-47 Score=457.95 Aligned_cols=351 Identities=36% Similarity=0.636 Sum_probs=313.9
Q ss_pred CCCcceEEEEEecCCCChhHHHhHHHHhccccchhhhccchhhhhhcccccceeeeeccccCcccccCCccccCCCCCCC
Q psy15197 22 GGKGRLHLVVIGHVDAGKSTLMGHLLYLMGRVSAREIHKHETESKKLGKQSFMYAWILDETGEESSCEIPVDTTSAGNPV 101 (902)
Q Consensus 22 ~~~~~~~v~v~G~~~~GKstL~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 101 (902)
..+..+||+||||+|||||||+|+|++.++.+..+++.+.+.++.+.|+++|.++|++|+..+|
T Consensus 163 ~~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e---------------- 226 (611)
T 3izq_1 163 SALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEE---------------- 226 (611)
T ss_dssp CCCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHH----------------
T ss_pred ccCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhh----------------
Confidence 3466789999999999999999999999999999999999999999999999999888777654
Q ss_pred CccccccccCCCCCCCCcchhhhhccccccCCCCccchhcccCCCCccccccchhhhccCCCCCCCCCcccccccccccc
Q psy15197 102 DSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFEDRETIIKTIGPHGPVPLEDTYYLDKLFHF 181 (902)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (902)
T Consensus 227 -------------------------------------------------------------------------------- 226 (611)
T 3izq_1 227 -------------------------------------------------------------------------------- 226 (611)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCcccccccCCCCccccceecccCCccchhhhhhhhhcccccccccccccCCeEEeeeEEEEEECCeEEEEEeCCCc
Q psy15197 182 SGERNPERVVHAKGGGAFGYFEVRKLPAGVVKIEFACLVMRIVPLEGIASALNRGITMDVGQSQFETKTKYITLLDAPGH 261 (902)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~e~~rGiTid~~~~~~~~~~~~i~lIDTPG~ 261 (902)
+++|+|++.....+.+.++.++|||||||
T Consensus 227 ---------------------------------------------------~~~GiTid~~~~~~~~~~~~~~iiDTPG~ 255 (611)
T 3izq_1 227 ---------------------------------------------------RERGVTVSICTSHFSTHRANFTIVDAPGH 255 (611)
T ss_dssp ---------------------------------------------------HHTTTCCSCSCCEEECSSCEEEEEECCSS
T ss_pred ---------------------------------------------------hhCCeeEeeeeEEEecCCceEEEEECCCC
Confidence 56788888888888999999999999999
Q ss_pred cchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHh
Q psy15197 262 KDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAF 341 (902)
Q Consensus 262 ~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~ 341 (902)
++|...+..+++.+|++|+|||++.|.++.+|+...|+.+++.++..++++++|||+||+|+++++...++++.+++..+
T Consensus 256 e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~~~ei~~~l~~~ 335 (611)
T 3izq_1 256 RDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPY 335 (611)
T ss_dssp SCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888888888899999999999998889999999999987777888888888888
Q ss_pred hhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCcccHHHHHHhcCC------CCCCCCCCceEEEeeEEeeC---
Q psy15197 342 LKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNFKT------PSRPLTKPLRMSVSDIYKST--- 412 (902)
Q Consensus 342 l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L~~l~~------p~~~~~~pl~~~I~~i~~v~--- 412 (902)
++.+++....++++++||++|.||.+++.....++||.|++|+++|+.+.. |....+.|++|+|.++|+++
T Consensus 336 l~~~g~~~~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~l~~~~p~~~p~~~~~~p~r~~V~~v~~~~~~~ 415 (611)
T 3izq_1 336 LVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLFSVLEIIPSKKTS 415 (611)
T ss_dssp HHHHTCCGGGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTTSCCCCCCSSSCCSCCSCCEEECCEEECCSSSC
T ss_pred HHhhcccccCccEEeeecccCCCccccCccccccccccCCcHHHHHHHHhhcccccCcccccccchhhheeeeeccCccC
Confidence 888887655679999999999999986553334899999999999998832 33456899999999999998
Q ss_pred CCeEEEEEEEEeeEeeCCCEEEEccCCcEEEEEEEEEc--------eEeeeeeccCCeEEEeeeccccccceeeccccCC
Q psy15197 413 GSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYVD--------EMSVSAAYAGDNVSVTLLNYDQQNVSVGFLLSEL 484 (902)
Q Consensus 413 g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~~--------~~~v~~a~aGdiv~I~l~~~~~~~i~kG~vL~~~ 484 (902)
+.|+|++|+|.+|+|++||.|.+.|.+...+|++|+++ +.++++|.|||+|+|.+.+....++++|++|+++
T Consensus 416 g~g~v~~G~V~~G~lk~Gd~v~~~p~~~~~~VksI~~~~~~~~~~~~~~v~~A~aGd~v~l~l~~~~~~di~rGdvl~~~ 495 (611)
T 3izq_1 416 NDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAASV 495 (611)
T ss_dssp SSSSEEEEEEEESEECTTCEEEETTTTEEEEEEEEECSSCCSCSSSCCCCCCEETTCEEEEEESSCCTTSCCTTCEEBCS
T ss_pred CCeeEEEEEEEeceeccCCEEEEecCCceEEEEEEEEcccccccccccccceecCCCcceEEeeeccHhhCcceEEccCC
Confidence 68999999999999999999999999999999999997 4899999999999999998888999999999998
Q ss_pred CC-CCCCcccceeeeeeecccCCcccccc-eecchhh
Q psy15197 485 SH-PCPVSSKFEARIVVFNITTPITIGYP-VTHDITH 519 (902)
Q Consensus 485 ~~-~~~~~~~F~a~irvvHakg~ga~G~f-v~~~is~ 519 (902)
.. ++..+..|+|++.++++++.+..||. +.+..+.
T Consensus 496 ~~~~~~~~~~f~a~v~~l~~~~~l~~g~~~~l~~~t~ 532 (611)
T 3izq_1 496 DYSSIHSAQCFVLELTTFDMNRPLLPGTPFILFIGVK 532 (611)
T ss_dssp TTCSCCCBSCEEEEEEECSCSSCBCTTEEEEEESSSC
T ss_pred CCCCCceeeEEEEEEEEECCCCCCCCCCEEEEEECCe
Confidence 87 78888999999999988889999997 6554443
No 22
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=100.00 E-value=2.5e-47 Score=443.11 Aligned_cols=342 Identities=42% Similarity=0.797 Sum_probs=272.4
Q ss_pred CCcceEEEEEecCCCChhHHHhHHHHhccccchhhhccchhhhhhcccccceeeeeccccCcccccCCccccCCCCCCCC
Q psy15197 23 GKGRLHLVVIGHVDAGKSTLMGHLLYLMGRVSAREIHKHETESKKLGKQSFMYAWILDETGEESSCEIPVDTTSAGNPVD 102 (902)
Q Consensus 23 ~~~~~~v~v~G~~~~GKstL~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 102 (902)
.+..+||+++||+|||||||+++|++.++.++++.+.+++.++.+.|+.+|.+++++|...+|
T Consensus 40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~e----------------- 102 (467)
T 1r5b_A 40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEE----------------- 102 (467)
T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC-----------------------------------
T ss_pred CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhh-----------------
Confidence 467799999999999999999999999999999999999999999999999998888777655
Q ss_pred ccccccccCCCCCCCCcchhhhhccccccCCCCccchhcccCCCCccccccchhhhccCCCCCCCCCccccccccccccc
Q psy15197 103 SETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFEDRETIIKTIGPHGPVPLEDTYYLDKLFHFS 182 (902)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (902)
T Consensus 103 -------------------------------------------------------------------------------- 102 (467)
T 1r5b_A 103 -------------------------------------------------------------------------------- 102 (467)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccccccCCCCccccceecccCCccchhhhhhhhhcccccccccccccCCeEEeeeEEEEEECCeEEEEEeCCCcc
Q psy15197 183 GERNPERVVHAKGGGAFGYFEVRKLPAGVVKIEFACLVMRIVPLEGIASALNRGITMDVGQSQFETKTKYITLLDAPGHK 262 (902)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~e~~rGiTid~~~~~~~~~~~~i~lIDTPG~~ 262 (902)
+++|+|++.....++++++.++|||||||+
T Consensus 103 --------------------------------------------------r~~giTi~~~~~~~~~~~~~~~iiDtPGh~ 132 (467)
T 1r5b_A 103 --------------------------------------------------REKGKTVEVGRAYFETEHRRFSLLDAPGHK 132 (467)
T ss_dssp ------------------------------------------------------------CCEEECSSEEEEECCCCC--
T ss_pred --------------------------------------------------hhcCceEEeeeEEEecCCeEEEEEECCCcH
Confidence 568888888888888899999999999999
Q ss_pred chHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCC--CchHHHHHHHHHHHHH
Q psy15197 263 DFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTV--SWSQDRFQEIVTKLGA 340 (902)
Q Consensus 263 df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~--~~~~~~~~~i~~~l~~ 340 (902)
+|...+..+++.+|++|||||++++.+|.+|+...|+++++.++..+++|++|||+||+|+. ++++++++.+.+++..
T Consensus 133 ~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~ 212 (467)
T 1r5b_A 133 GYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSM 212 (467)
T ss_dssp ---------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccHHHHHHHHHHHHH
Confidence 99999999999999999999999998888888778999999999999988788999999995 4556777888888888
Q ss_pred hhhhc-CCC-CCCceEecCCCccCCCCCCCCCCcccccccCcccHHHHHHhcCCCCCCCCCCceEEEeeEEeeCCCeEEE
Q psy15197 341 FLKQA-GFR-DSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNFKTPSRPLTKPLRMSVSDIYKSTGSGYCI 418 (902)
Q Consensus 341 ~l~~~-~~~-~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L~~l~~p~~~~~~pl~~~I~~i~~v~g~G~V~ 418 (902)
+++.. ++. ...++++++||++|.|+.+++. ...++||.|++|++.|+.++++.+..++|++++|+++|+ +.|+|+
T Consensus 213 ~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~-~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~v~~~~~--~~G~v~ 289 (467)
T 1r5b_A 213 FLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD-SSVCPWYQGPSLLEYLDSMTHLERKVNAPFIMPIASKYK--DLGTIL 289 (467)
T ss_dssp HHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC-TTTCSSCCSCCHHHHHHHCCCCHHHHTSCCEEECCEEEE--SSSEEE
T ss_pred HHHHhcCCCccCCceEEecccccccccccccc-cccCccccchhHHHHHHhCCCCcCCCCCCcEEEEEEEEe--CCCeEE
Confidence 88877 663 2257899999999999998764 346799999999999999988776678999999999987 579999
Q ss_pred EEEEEeeEeeCCCEEEEccCCcEEEEEEEEEc-eEeeeeeccCCeEEEeeeccccccceeeccccCCCCCCCCcccceee
Q psy15197 419 AGRVETGVILAGEKVMVQPQNEVTTVKAVYVD-EMSVSAAYAGDNVSVTLLNYDQQNVSVGFLLSELSHPCPVSSKFEAR 497 (902)
Q Consensus 419 ~GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~~-~~~v~~a~aGdiv~I~l~~~~~~~i~kG~vL~~~~~~~~~~~~F~a~ 497 (902)
+|+|.+|+|++||.|.+.|.+...+|++|+++ +.++++|.|||+|+|.+.+ ...++++|++|+++..++..+..|+++
T Consensus 290 ~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~~a~aG~~v~i~l~g-~~~~i~rG~vl~~~~~~~~~~~~f~a~ 368 (467)
T 1r5b_A 290 EGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSICGDQVRLRVRG-DDSDVQTGYVLTSTKNPVHATTRFIAQ 368 (467)
T ss_dssp EEECCBSEEETTEEEEEETTTEEEEEEEEECTTCCEESEEETTCEEEEEEES-CCTTCCTTCEEECSSSCCCEEEEEEEE
T ss_pred EEEEeeeEEeeCCEEEEccCCeeEEEEEEeccCCcEeeEEcCCCEEEEEEec-cHhhCCceEEEeCCCCCCccceEEEEE
Confidence 99999999999999999999999999999997 8999999999999999988 788999999999988888888999999
Q ss_pred eeeecccCCcccccc-eec
Q psy15197 498 IVVFNITTPITIGYP-VTH 515 (902)
Q Consensus 498 irvvHakg~ga~G~f-v~~ 515 (902)
+.++++++.+..||. +.+
T Consensus 369 v~~l~~~~~~~~g~~~~~~ 387 (467)
T 1r5b_A 369 IAILELPSILTTGYSCVMH 387 (467)
T ss_dssp EEECSSCCCBSSCCCBEEE
T ss_pred EEEeCCCCccCCCCEEEEE
Confidence 999988888999996 544
No 23
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=100.00 E-value=5.9e-47 Score=436.60 Aligned_cols=346 Identities=39% Similarity=0.721 Sum_probs=299.5
Q ss_pred CCcceEEEEEecCCCChhHHHhHHHHhccccchhhhccchhhhhhcccccceeeeeccccCcccccCCccccCCCCCCCC
Q psy15197 23 GKGRLHLVVIGHVDAGKSTLMGHLLYLMGRVSAREIHKHETESKKLGKQSFMYAWILDETGEESSCEIPVDTTSAGNPVD 102 (902)
Q Consensus 23 ~~~~~~v~v~G~~~~GKstL~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 102 (902)
.+..+||+++||+|||||||+++|++.++.++++.+.+.+.++.+.|+++|.+++++|...+|
T Consensus 3 ~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E----------------- 65 (435)
T 1jny_A 3 QKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEE----------------- 65 (435)
T ss_dssp -CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------------
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHH-----------------
Confidence 356799999999999999999999999999999988888888899999988888877766654
Q ss_pred ccccccccCCCCCCCCcchhhhhccccccCCCCccchhcccCCCCccccccchhhhccCCCCCCCCCccccccccccccc
Q psy15197 103 SETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFEDRETIIKTIGPHGPVPLEDTYYLDKLFHFS 182 (902)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (902)
T Consensus 66 -------------------------------------------------------------------------------- 65 (435)
T 1jny_A 66 -------------------------------------------------------------------------------- 65 (435)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccccccCCCCccccceecccCCccchhhhhhhhhcccccccccccccCCeEEeeeEEEEEECCeEEEEEeCCCcc
Q psy15197 183 GERNPERVVHAKGGGAFGYFEVRKLPAGVVKIEFACLVMRIVPLEGIASALNRGITMDVGQSQFETKTKYITLLDAPGHK 262 (902)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~e~~rGiTid~~~~~~~~~~~~i~lIDTPG~~ 262 (902)
+++|+|++.....++++++.++|||||||.
T Consensus 66 --------------------------------------------------~~~giTi~~~~~~~~~~~~~~~iiDtpG~~ 95 (435)
T 1jny_A 66 --------------------------------------------------RERGVTINLTFMRFETKKYFFTIIDAPGHR 95 (435)
T ss_dssp -------------------------------------------------------------CEEECSSCEEEECCCSSST
T ss_pred --------------------------------------------------HhcCceeEeeEEEEecCCeEEEEEECCCcH
Confidence 678889998888899999999999999999
Q ss_pred chHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCC--chHHHHHHHHHHHHH
Q psy15197 263 DFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVS--WSQDRFQEIVTKLGA 340 (902)
Q Consensus 263 df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~--~~~~~~~~i~~~l~~ 340 (902)
+|...+..+++.+|++|+|+|++++.++..+++..|+++++.++..++++++|||+||+|+.+ +++++++.+.+++..
T Consensus 96 ~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~ 175 (435)
T 1jny_A 96 DFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSK 175 (435)
T ss_dssp THHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccHHHHHHHHHHHHH
Confidence 999999999999999999999999866655556679999999999999887889999999986 556677888888888
Q ss_pred hhhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCcccHHHHHHhcCCCCCCCCCCceEEEeeEEeeCCCeEEEEE
Q psy15197 341 FLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNFKTPSRPLTKPLRMSVSDIYKSTGSGYCIAG 420 (902)
Q Consensus 341 ~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L~~l~~p~~~~~~pl~~~I~~i~~v~g~G~V~~G 420 (902)
+++..++....++++++||++|.|+.+.+. .+.||.|+.|++.|+.+++|.+..++|++++|.++|++++.|+|++|
T Consensus 176 ~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~---~~~~~~g~~Ll~~l~~~~~p~~~~~~~~~~~v~~v~~~~~~G~v~~g 252 (435)
T 1jny_A 176 FMRSYGFNTNKVRFVPVVAPSGDNITHKSE---NMKWYNGPTLEEYLDQLELPPKPVDKPLRIPIQDVYSISGVGTVPVG 252 (435)
T ss_dssp HHHHTTCCCTTCEEEECBTTTTBTTTBCCS---SCTTCCSCCHHHHHTTCCCCCCGGGSCCBEEEEEEEEETTTEEEEEE
T ss_pred HHHHcCCCcCCceEEEeecccCcccccccc---ccccccchhHHHHHhccCCCCCCCCCCeEEEEEEEEEeCCCcEEEEE
Confidence 898888765567999999999999998665 25899999999999998887776788999999999999999999999
Q ss_pred EEEeeEeeCCCEEEEccCCcEEEEEEEEEceEeeeeeccCCeEEEeeeccccccceeeccccCCCCCCCCcccceeeeee
Q psy15197 421 RVETGVILAGEKVMVQPQNEVTTVKAVYVDEMSVSAAYAGDNVSVTLLNYDQQNVSVGFLLSELSHPCPVSSKFEARIVV 500 (902)
Q Consensus 421 rV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~~~~~v~~a~aGdiv~I~l~~~~~~~i~kG~vL~~~~~~~~~~~~F~a~irv 500 (902)
+|++|+|++||.|.+.|.+...+|++|++++.++++|.|||+|++.+.++..+++++|++|+++..++..+..|++++.+
T Consensus 253 ~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~g~~~~~i~~Gd~l~~~~~~~~~~~~f~a~v~~ 332 (435)
T 1jny_A 253 RVESGVLKVGDKIVFMPAGKVGEVRSIETHHTKMDKAEPGDNIGFNVRGVEKKDIKRGDVVGHPNNPPTVADEFTARIIV 332 (435)
T ss_dssp ECCBSCEETTCEEEEETTTEEEEEEEEEETTEEESEECTTCEEEEEEESSCGGGCCTTCEEECTTSCCCEESEEEEEEEE
T ss_pred EEecCeEEcCCEEEECCceeEEEEEEEEECCcEEeEEcCCCEEEEEEecCCHHHcCCccEecCCCCCceEeEEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999888888999999999987777788899999999
Q ss_pred ecccCCcccccc-eecchh
Q psy15197 501 FNITTPITIGYP-VTHDIT 518 (902)
Q Consensus 501 vHakg~ga~G~f-v~~~is 518 (902)
++++..+..||. +.+..+
T Consensus 333 l~~~~~l~~g~~~~~~~~t 351 (435)
T 1jny_A 333 VWHPTALANGYTPVLHVHT 351 (435)
T ss_dssp CCCSSCBCTTCCCEEEETT
T ss_pred ECCCCcCCCCCEEEEEeCC
Confidence 988888999997 555433
No 24
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=2.5e-43 Score=406.30 Aligned_cols=275 Identities=28% Similarity=0.483 Sum_probs=239.2
Q ss_pred ccccCCeEEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhC
Q psy15197 231 SALNRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLG 310 (902)
Q Consensus 231 ~e~~rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~ 310 (902)
+|+++|+|++.....+.++++.++|||||||++|...+..++..+|++|||+|++++.+ .|+.+++.++..++
T Consensus 84 ~E~~rGiTi~~~~~~~~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-------~qt~~~l~~~~~~~ 156 (434)
T 1zun_B 84 AEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-------TQTRRHSYIASLLG 156 (434)
T ss_dssp C-----CCCCCEEEEEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-------HHHHHHHHHHHHTT
T ss_pred hHHHCCcEEEeeeeEeecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-------HHHHHHHHHHHHcC
Confidence 34899999999999999999999999999999999999999999999999999999843 68999998888889
Q ss_pred CCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCcccHHHHHHhc
Q psy15197 311 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNF 390 (902)
Q Consensus 311 i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L~~l 390 (902)
++++|+|+||+|+.++++++++++.+++..+++.+++....++++++||++|.|+.+++. .++||.|++|++.|+.+
T Consensus 157 ~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~---~~~w~~g~~L~~~l~~i 233 (434)
T 1zun_B 157 IKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE---RSPWYAGQSLMEILETV 233 (434)
T ss_dssp CCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT---TCTTCCSCCTTHHHHHS
T ss_pred CCeEEEEEEcCcCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc---cCccccCchHHHHHhcC
Confidence 888889999999987666667777778888888777433457899999999999998766 47899999999999999
Q ss_pred CCCCCCCCCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCcEEEEEEEEEceEeeeeeccCCeEEEeeecc
Q psy15197 391 KTPSRPLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYVDEMSVSAAYAGDNVSVTLLNY 470 (902)
Q Consensus 391 ~~p~~~~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~~~~~v~~a~aGdiv~I~l~~~ 470 (902)
+++....+.|++++|.++++..+.|+++.|+|.+|+|++||.|.+.|.+...+|++|++++.++++|.|||+|++.+..
T Consensus 234 ~~~~~~~~~~~~~~v~~v~~~~~~~~g~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~~- 312 (434)
T 1zun_B 234 EIASDRNYTDLRFPVQYVNRPNLNFRGFAGTLASGIVHKGDEIVVLPSGKSSRVKSIVTFEGELEQAGPGQAVTLTMED- 312 (434)
T ss_dssp CCTTCCCSSSCEEECCEEECSSSSCCEEEEECCBSCEETTCEEEETTTCCEEEEEEEEETTEEESEECTTCEEEEEESS-
T ss_pred CCcccCCCCCcEEEEEEEeccCCCceEEEEEEecceEeCCCEEEEecCCeEEEEEEEEEcCcceeEecCCCEEEEEeCC-
Confidence 8887778899999999999988888889999999999999999999999999999999999999999999999999873
Q ss_pred ccccceeeccccCCCCCCCCcccceeeeeeecccCCcccccc-eecchh
Q psy15197 471 DQQNVSVGFLLSELSHPCPVSSKFEARIVVFNITTPITIGYP-VTHDIT 518 (902)
Q Consensus 471 ~~~~i~kG~vL~~~~~~~~~~~~F~a~irvvHakg~ga~G~f-v~~~is 518 (902)
..++++|++|+++..++..+..|++++.+++ +..+..||. +.+..+
T Consensus 313 -~~~i~~G~~l~~~~~~~~~~~~f~a~~~~l~-~~~l~~g~~~~~~~~t 359 (434)
T 1zun_B 313 -EIDISRGDLLVHADNVPQVSDAFDAMLVWMA-EEPMLPGKKYDIKRAT 359 (434)
T ss_dssp -CCCCCTTCEEEETTSCCCEEEEEEEEEEECC-SSCBCTTCCEEEECSS
T ss_pred -ccccCCccEEECCCCCCCcccEEEEEEEEec-cccCCCCCEEEEEEcC
Confidence 4578999999998888788889999999997 567888987 554433
No 25
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=100.00 E-value=2.1e-40 Score=377.72 Aligned_cols=269 Identities=26% Similarity=0.453 Sum_probs=230.7
Q ss_pred cccCCeEEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCC
Q psy15197 232 ALNRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGV 311 (902)
Q Consensus 232 e~~rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i 311 (902)
|+++|+|++.....+.++++.++|||||||++|...+..+++.+|++|+|||++++.+ .|+.+++.++...++
T Consensus 47 e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~-------~qt~e~l~~~~~~~v 119 (397)
T 1d2e_A 47 ERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPM-------PQTREHLLLARQIGV 119 (397)
T ss_dssp EEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSC-------HHHHHHHHHHHHTTC
T ss_pred HHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCC-------HHHHHHHHHHHHcCC
Confidence 4889999999988888889999999999999999999999999999999999999843 689999988888898
Q ss_pred CeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCc--ccHHHHHHh
Q psy15197 312 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSG--PCLLDVIDN 389 (902)
Q Consensus 312 ~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g--~~Lle~L~~ 389 (902)
|.+|+|+||+|+.+ +.+.++.+.+++..+++..++....++++++||++|.|... +.|+.| ..|++.|..
T Consensus 120 p~iivviNK~Dl~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~-------~~~~~g~i~~Ll~~l~~ 191 (397)
T 1d2e_A 120 EHVVVYVNKADAVQ-DSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRD-------PELGLKSVQKLLDAVDT 191 (397)
T ss_dssp CCEEEEEECGGGCS-CHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCC-------TTTTHHHHHHHHHHHHH
T ss_pred CeEEEEEECcccCC-CHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccC-------CCccCCcHHHHHHHHHH
Confidence 87779999999985 34455666677888888888765567999999999987432 568765 357777765
Q ss_pred -cCCCCCCCCCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCC--cEEEEEEEEEceEeeeeeccCCeEEEe
Q psy15197 390 -FKTPSRPLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQN--EVTTVKAVYVDEMSVSAAYAGDNVSVT 466 (902)
Q Consensus 390 -l~~p~~~~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~--~~~~V~sI~~~~~~v~~a~aGdiv~I~ 466 (902)
+++|.+..++|++++|+++|+++++|+|++|+|.+|+|++||.|.+.|.+ ...+|++|++++.++++|.|||+|++.
T Consensus 192 ~~p~p~~~~~~p~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~V~~i~~~~~~~~~a~aG~~v~~~ 271 (397)
T 1d2e_A 192 YIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMFHKSLDRAEAGDNLGAL 271 (397)
T ss_dssp HSCCCCCCTTSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEEETTEEEEEEEEEEEETTEEESEEETTCEEEEE
T ss_pred hCCCCCCCCCCcEEEEEEEEEEeCCceEEEEEEEeeceEeCCCEEEEeCCCCCeEEEEEEEEECCcccCEecCCCceEEE
Confidence 66677777899999999999999999999999999999999999998875 678999999999999999999999999
Q ss_pred eeccccccceeeccccCCCCCCCCcccceeeeeeeccc-----CCcccccc-eecc
Q psy15197 467 LLNYDQQNVSVGFLLSELSHPCPVSSKFEARIVVFNIT-----TPITIGYP-VTHD 516 (902)
Q Consensus 467 l~~~~~~~i~kG~vL~~~~~~~~~~~~F~a~irvvHak-----g~ga~G~f-v~~~ 516 (902)
+.++...++++|++|+++.. +.....|++++.++++. .....||. ..+.
T Consensus 272 l~~i~~~~i~~G~~l~~~~~-~~~~~~f~a~v~~l~~~~~~~~~~~~~g~~~~~~~ 326 (397)
T 1d2e_A 272 VRGLKREDLRRGLVMAKPGS-IQPHQKVEAQVYILTKEEGGRHKPFVSHFMPVMFS 326 (397)
T ss_dssp ESSCCGGGCCTTCEEESTTS-CCCEEEEEEEEEECCGGGTSCSSCBCTTCCCEEEE
T ss_pred ecccchhccCceeEEeCCCC-CCcccEEEEEEEEeccccccCccccCCCCEEEEEE
Confidence 98888899999999998774 45578999999998764 46778887 5443
No 26
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=100.00 E-value=1.4e-39 Score=371.73 Aligned_cols=275 Identities=33% Similarity=0.489 Sum_probs=231.0
Q ss_pred cccCCeEEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCC
Q psy15197 232 ALNRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGV 311 (902)
Q Consensus 232 e~~rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i 311 (902)
|+++|+|++.....+.++++.++|||||||++|...+..+++.+|++|+|+|++++.+ .++.+++..+...++
T Consensus 56 e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~-------~qt~~~l~~~~~~~i 128 (405)
T 2c78_A 56 ERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPM-------PQTREHILLARQVGV 128 (405)
T ss_dssp HHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCC-------HHHHHHHHHHHHTTC
T ss_pred HHHcCCCEEeeeeEeccCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCC
Confidence 3789999999888899899999999999999999999999999999999999999844 589999998988998
Q ss_pred CeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCCC--CcccccccCc-ccHHHHHH
Q psy15197 312 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQ--VPALTSWYSG-PCLLDVID 388 (902)
Q Consensus 312 ~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~--~~~~~~w~~g-~~Lle~L~ 388 (902)
|.+|+|+||+|+.+ +.+.++.+.+++..+++.+++....++++++||++|.|+.+... .+...+||.+ ..|++.|.
T Consensus 129 p~iivviNK~Dl~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~ 207 (405)
T 2c78_A 129 PYIVVFMNKVDMVD-DPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAID 207 (405)
T ss_dssp CCEEEEEECGGGCC-CHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHH
T ss_pred CEEEEEEECccccC-cHHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHH
Confidence 87889999999985 34455666667778888887755567999999999988543110 0113567754 34667776
Q ss_pred h-cCCCCCCCCCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCC---cEEEEEEEEEceEeeeeeccCCeEE
Q psy15197 389 N-FKTPSRPLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQN---EVTTVKAVYVDEMSVSAAYAGDNVS 464 (902)
Q Consensus 389 ~-l~~p~~~~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~---~~~~V~sI~~~~~~v~~a~aGdiv~ 464 (902)
. +++|.+..++|++++|+++|++++.|+|++|+|.+|+|++||.|.+.|.+ ...+|++|++++.++++|.|||+|+
T Consensus 208 ~~lp~p~~~~~~p~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~~V~~i~~~~~~~~~a~aG~~v~ 287 (405)
T 2c78_A 208 EYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVG 287 (405)
T ss_dssp HHSCCCCCCCSSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEESSSSSCEEEEEEEEEETTEEESEEETTCEEE
T ss_pred hhcCCCCCCCCCCcEEEEEEEEEcCCCceEEEEEEecccccCCCEEEEeCCCCCeeeEEEEEEEECCcccCEEcCCCEEE
Confidence 5 66677777899999999999999999999999999999999999999987 5889999999999999999999999
Q ss_pred EeeeccccccceeeccccCCCCCCCCcccceeeeeeeccc-----CCcccccc-eec
Q psy15197 465 VTLLNYDQQNVSVGFLLSELSHPCPVSSKFEARIVVFNIT-----TPITIGYP-VTH 515 (902)
Q Consensus 465 I~l~~~~~~~i~kG~vL~~~~~~~~~~~~F~a~irvvHak-----g~ga~G~f-v~~ 515 (902)
+.+.++...++++|++|+++.. +.....|++++.+++.. .....||. +.+
T Consensus 288 ~~l~g~~~~~i~~G~~l~~~~~-~~~~~~f~a~v~~l~~~~~~~~~~~~~g~~~~~~ 343 (405)
T 2c78_A 288 VLLRGVSREEVERGQVLAKPGS-ITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFY 343 (405)
T ss_dssp EEESSCCTTTCCTTCEEESTTS-SEEEEEEEEEEEECCGGGTSCSSCBCTTCCCEEE
T ss_pred EEECCCcHhhcCceEEEEcCCC-CceeEEEEEEEEEecccCCCccccccCCceEEEE
Confidence 9998888899999999998874 55678999999998753 46778887 544
No 27
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=100.00 E-value=1.2e-37 Score=382.97 Aligned_cols=264 Identities=32% Similarity=0.505 Sum_probs=218.9
Q ss_pred cccCCeEEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCC
Q psy15197 232 ALNRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGV 311 (902)
Q Consensus 232 e~~rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i 311 (902)
|+++|+|++.....+..+++.++|||||||++|...+..+++.+|++|||||++++.+ .|+.+++.++...++
T Consensus 340 ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~-------~QTrEhL~ll~~lgI 412 (1289)
T 3avx_A 340 EKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPM-------PQTREHILLGRQVGV 412 (1289)
T ss_dssp --------CCSCEEEECSSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSC-------TTHHHHHHHHHHHTC
T ss_pred cccCceeEEEEEEEEcCCCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCc-------HHHHHHHHHHHHcCC
Confidence 4789999999888898899999999999999999999999999999999999999854 589999998888999
Q ss_pred CeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCc-ccHHHHHHh-
Q psy15197 312 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSG-PCLLDVIDN- 389 (902)
Q Consensus 312 ~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g-~~Lle~L~~- 389 (902)
|.+|||+||+|+.+ +.+.++.+.+++..+++..++....++++++||++|.+- ...|+.| ..|++.|..
T Consensus 413 P~IIVVINKiDLv~-d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng--------~~~w~eGI~eLleaL~~~ 483 (1289)
T 3avx_A 413 PYIIVFLNKCDMVD-DEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEG--------DAEWEAKILELAGFLDSY 483 (1289)
T ss_dssp SCEEEEEECCTTCC-CHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTC--------CHHHHHHHHHHHHHHHHT
T ss_pred CeEEEEEeeccccc-chhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCC--------CccccccchhhHhHHhhh
Confidence 87889999999985 344556666778888888887656789999999999431 1346654 236676665
Q ss_pred cCCCCCCCCCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCC--cEEEEEEEEEceEeeeeeccCCeEEEee
Q psy15197 390 FKTPSRPLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQN--EVTTVKAVYVDEMSVSAAYAGDNVSVTL 467 (902)
Q Consensus 390 l~~p~~~~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~--~~~~V~sI~~~~~~v~~a~aGdiv~I~l 467 (902)
+++|.+..++|++++|+++|+++++|+|++|+|.+|+|++||.|.+.|.+ ...+|++|++++.++++|.|||+|++.+
T Consensus 484 Ip~P~r~~d~Pfr~pId~Vf~i~G~GtVvtGrV~sGtLkvGD~V~I~ps~~~~~~kVksI~~~~~~v~eA~AGd~Vgl~L 563 (1289)
T 3avx_A 484 IPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLL 563 (1289)
T ss_dssp SCCCCCGGGSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEESSSSCEEEEEEEEECSSCEESEEETTCEEEEEE
T ss_pred cCCCccccccceeeeccccccccCCcEEEEEEEeccEEecCCEEEEecCCCceeEEEEEEeecCceeeEEecCCcceeEe
Confidence 56666677899999999999999999999999999999999999999987 5789999999999999999999999999
Q ss_pred eccccccceeeccccCCCCCCCCcccceeeeeeeccc-----CCcccccc
Q psy15197 468 LNYDQQNVSVGFLLSELSHPCPVSSKFEARIVVFNIT-----TPITIGYP 512 (902)
Q Consensus 468 ~~~~~~~i~kG~vL~~~~~~~~~~~~F~a~irvvHak-----g~ga~G~f 512 (902)
.++...++++|++|+++..+ .....|++++.+++.. .....||.
T Consensus 564 ~GI~~~dI~RGdVL~~~~~~-~~~~~F~A~V~~L~~~egg~~~pi~~G~~ 612 (1289)
T 3avx_A 564 RGIKREEIERGQVLAKPGTI-KPHTKFESEVYILSKDEGGRHTPFFKGYR 612 (1289)
T ss_dssp SSCCGGGCCTTCEEESTTSC-CEEEEEEEEEEECCGGGTSCSSCBCTTCC
T ss_pred eecchhcCCcccEEecCCCC-ccceeEEEEEEEEccccccccccccCCCc
Confidence 88888999999999987754 5578999999888743 46778876
No 28
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=100.00 E-value=2e-36 Score=346.35 Aligned_cols=250 Identities=23% Similarity=0.370 Sum_probs=204.9
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHHH
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDR 330 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~ 330 (902)
+.++|||||||.+|...+..++..+|++|||||++++. ...|+.+++..+..++++++|+|+||+|+.+. ..
T Consensus 83 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~------~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~--~~ 154 (410)
T 1kk1_A 83 RRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPC------PRPQTREHLMALQIIGQKNIIIAQNKIELVDK--EK 154 (410)
T ss_dssp EEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCS------SCHHHHHHHHHHHHHTCCCEEEEEECGGGSCH--HH
T ss_pred cEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCC------CChhHHHHHHHHHHcCCCcEEEEEECccCCCH--HH
Confidence 68999999999999999999999999999999999873 13689999998888898888899999999863 23
Q ss_pred HHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCcccHHHHHHh-cCCCCCCCCCCceEEEeeEE
Q psy15197 331 FQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDN-FKTPSRPLTKPLRMSVSDIY 409 (902)
Q Consensus 331 ~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L~~-l~~p~~~~~~pl~~~I~~i~ 409 (902)
..+..+++..+++... ...++++++||++|.|+.+ |++.|.. +++|....+.|++++|.++|
T Consensus 155 ~~~~~~~i~~~l~~~~--~~~~~~i~vSA~~g~gi~~---------------L~~~l~~~~~~p~~~~~~~~~~~v~~~f 217 (410)
T 1kk1_A 155 ALENYRQIKEFIEGTV--AENAPIIPISALHGANIDV---------------LVKAIEDFIPTPKRDPNKPPKMLVLRSF 217 (410)
T ss_dssp HHHHHHHHHHHHTTST--TTTCCEEECBTTTTBSHHH---------------HHHHHHHHSCCCCCCTTSCCEEEEEEEE
T ss_pred HHHHHHHHHHHHHhcC--cCCCeEEEeeCCCCCCHHH---------------HHHHHHHhCCCCccccCCCcEEEEEEEE
Confidence 3344455556665432 2346899999999999998 8888876 67677777889999999999
Q ss_pred eeCC--------CeEEEEEEEEeeEeeCCCEEEEccCCc------------EEEEEEEEEceEeeeeeccCCeEEEeee-
Q psy15197 410 KSTG--------SGYCIAGRVETGVILAGEKVMVQPQNE------------VTTVKAVYVDEMSVSAAYAGDNVSVTLL- 468 (902)
Q Consensus 410 ~v~g--------~G~V~~GrV~sG~Lk~Gd~v~l~p~~~------------~~~V~sI~~~~~~v~~a~aGdiv~I~l~- 468 (902)
.+.+ .|+|++|+|.+|+|++||.|.+.|.+. ..+|++|+.++.++++|.|||++++.+.
T Consensus 218 ~v~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~g~~~~~~~~~~v~~i~~~~~~v~~a~aG~~v~~~~~~ 297 (410)
T 1kk1_A 218 DVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAGGQFVEEAYPGGLVGVGTKL 297 (410)
T ss_dssp CCSCCC----CCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTEEESEECSSSCEEEEESS
T ss_pred eccCCCccccCCceEEEEEEEEeCeEeeCCEEEECCCCccccccccccccceeEEEEEEECCeEecEEcCCCEEEEEEec
Confidence 7753 788999999999999999999988642 5789999999999999999999999875
Q ss_pred --ccccccceeeccccCCCCCCCCcccceeeeeeeccc---------CCcccccc-eecchhhhhhhhe
Q psy15197 469 --NYDQQNVSVGFLLSELSHPCPVSSKFEARIVVFNIT---------TPITIGYP-VTHDITHLTKAAI 525 (902)
Q Consensus 469 --~~~~~~i~kG~vL~~~~~~~~~~~~F~a~irvvHak---------g~ga~G~f-v~~~is~~~~A~i 525 (902)
.+...++.+|++|+++..+++....|++++.+++.. ..+..||. ..+..+..+.+.+
T Consensus 298 ~~~~~~~d~~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~~l~~g~~~~~~~~t~~~~~~v 366 (410)
T 1kk1_A 298 DPYLTKGDLMAGNVVGKPGKLPPVWDSLRLEVHLLERVVGTEQELKVEPIKRKEVLLLNVGTARTMGLV 366 (410)
T ss_dssp CGGGTGGGTTTTCEEECTTCSCCEEEEEEEEEEECCCCC--CCCCSCCCCCTTCEEEEEETTEEEEEEE
T ss_pred CcccchhhccceeEEecCCCCCceeEEEEEEEEEEecccccccccccccCCCCCEEEEEEcCCEEeEEE
Confidence 355678999999999888777788999999998763 67889987 5554444443433
No 29
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=100.00 E-value=5.7e-37 Score=345.66 Aligned_cols=251 Identities=18% Similarity=0.296 Sum_probs=209.3
Q ss_pred CCeEEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeE
Q psy15197 235 RGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQL 314 (902)
Q Consensus 235 rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~i 314 (902)
+|+|++.....++++++.++|||||||++|...+..+++.+|++||||| +.+. ..|+++++.++..++++.+
T Consensus 44 ~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g~-------~~qt~e~~~~~~~~~i~~~ 115 (370)
T 2elf_A 44 KGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQGL-------DAHTGECIIALDLLGFKHG 115 (370)
T ss_dssp EEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTCC-------CHHHHHHHHHHHHTTCCEE
T ss_pred CCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CCCC-------cHHHHHHHHHHHHcCCCeE
Confidence 3567777777788888999999999999999999999999999999999 8874 4699999999999999876
Q ss_pred EEEEe-cCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEec--CCCcc---CCCCCCCCCCcccccccCcccHHHHHH
Q psy15197 315 GVVIN-KLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVP--CSGLT---GENLTTPSQVPALTSWYSGPCLLDVID 388 (902)
Q Consensus 315 IVviN-KiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~--iSA~~---G~gI~~~~~~~~~~~w~~g~~Lle~L~ 388 (902)
|+++| |+|+ + ....+++.+++..+++..++ ..+|+++ +||++ |.|+++ |++.|.
T Consensus 116 ivvvNNK~Dl-~--~~~~~~~~~~i~~~l~~~~~--~~~~ii~~~~SA~~~~~g~gi~~---------------L~~~l~ 175 (370)
T 2elf_A 116 IIALTRSDST-H--MHAIDELKAKLKVITSGTVL--QDWECISLNTNKSAKNPFEGVDE---------------LKARIN 175 (370)
T ss_dssp EEEECCGGGS-C--HHHHHHHHHHHHHHTTTSTT--TTCEEEECCCCTTSSSTTTTHHH---------------HHHHHH
T ss_pred EEEEEeccCC-C--HHHHHHHHHHHHHHHHhcCC--CceEEEecccccccCcCCCCHHH---------------HHHHHH
Confidence 79999 9999 5 34445556677777766543 3469999 99999 999988 555554
Q ss_pred hcCCC----CCC-CCCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCcEEEEEEEEEceEeeeeeccCCeE
Q psy15197 389 NFKTP----SRP-LTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYVDEMSVSAAYAGDNV 463 (902)
Q Consensus 389 ~l~~p----~~~-~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~~~~~v~~a~aGdiv 463 (902)
...++ ..+ ...|++++|.++|++++.|+|++|+|++|+|++||.|.+.|.+...+|++|++++.++++|.|||+|
T Consensus 176 ~~~~~~~~~~~~~~~~p~r~~v~~vf~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~aGd~v 255 (370)
T 2elf_A 176 EVAEKIEAENAELNSLPARIFIDHAFNVTGKGCVVLGVVKQGISKDKDKTKIFPLDRDIEIRSIQSHDVDIDSAPAGTRV 255 (370)
T ss_dssp HHHHHHHHHHHHGGGSCCEEEEEEEECCC---CEEEEEEEESEEETTCEEEEETTTEEEEEEEEEETTEEESEEETTCEE
T ss_pred hhccccccCCcccccccccccceeEEEcCCCceEEEEEEECCEEeeCCEEEECCCCcEEEEeEEEECCCCccEEcCCCcc
Confidence 43221 112 4566899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeccccccceeeccccCCCCCCCCcccceeeeeeecccCCcccccc-eecc
Q psy15197 464 SVTLLNYDQQNVSVGFLLSELSHPCPVSSKFEARIVVFNITTPITIGYP-VTHD 516 (902)
Q Consensus 464 ~I~l~~~~~~~i~kG~vL~~~~~~~~~~~~F~a~irvvHakg~ga~G~f-v~~~ 516 (902)
++.+.++..+++++|++|++ .+ .....|++++.+++.+..+..||. ..+.
T Consensus 256 ~i~l~gv~~~~i~~Gdvl~~--~~-~~~~~f~a~v~~l~~~~~i~~g~~~~~~~ 306 (370)
T 2elf_A 256 GMRLKNVQAKDIERGFIISD--KE-IVTTDYTLECTVSKFTKKIEPASVLHLFV 306 (370)
T ss_dssp EEEEESCCGGGCCTTCEEES--CC-EEEEEEEEEEEECTTSCCBCTTCEEEEEE
T ss_pred eEEEeccCHHHcCCceEEEC--CC-ceeEEEEEEEEEECCCCCCCCCCEEEEEE
Confidence 99998888889999999998 34 678899999999988888999997 5443
No 30
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=1.5e-36 Score=347.11 Aligned_cols=250 Identities=23% Similarity=0.366 Sum_probs=197.9
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHHH
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDR 330 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~ 330 (902)
+.++|||||||++|...+..++..+|++|||+|++++. ...|+.+++..+..++++++|+|+||+|+.+.+.
T Consensus 81 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~------~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~-- 152 (408)
T 1s0u_A 81 RRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPC------PQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQ-- 152 (408)
T ss_dssp EEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCS------SCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTT--
T ss_pred cEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCC------CCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHH--
Confidence 68999999999999999999999999999999999873 1368999998888888888889999999986332
Q ss_pred HHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCcccHHHHHHh-cCCCCCCCCCCceEEEeeEE
Q psy15197 331 FQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDN-FKTPSRPLTKPLRMSVSDIY 409 (902)
Q Consensus 331 ~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L~~-l~~p~~~~~~pl~~~I~~i~ 409 (902)
..+..+++..+++... ...++++++||++|.||.+ |++.|.. ++.+.+..++|++++|.++|
T Consensus 153 ~~~~~~~i~~~l~~~~--~~~~~~i~vSA~~g~gi~~---------------L~~~l~~~i~~~~~~~~~~~~~~v~~~f 215 (408)
T 1s0u_A 153 AEENYEQIKEFVKGTI--AENAPIIPISAHHEANIDV---------------LLKAIQDFIPTPKRDPDATPRMYVARSF 215 (408)
T ss_dssp TTTHHHHHHHHHTTST--TTTCCEEEC------CHHH---------------HHHHHHHHSCCCCCCTTSCCEEEEEEEE
T ss_pred HHHHHHHHHHHHhhcC--CCCCeEEEeeCCCCCCHHH---------------HHHHHHHhCCCCcccCCCCeEEEEEEEE
Confidence 1122334444554332 2346899999999999998 8888875 77777777899999999999
Q ss_pred eeCC--------CeEEEEEEEEeeEeeCCCEEEEccCCc------------EEEEEEEEEceEeeeeeccCCeEEEeee-
Q psy15197 410 KSTG--------SGYCIAGRVETGVILAGEKVMVQPQNE------------VTTVKAVYVDEMSVSAAYAGDNVSVTLL- 468 (902)
Q Consensus 410 ~v~g--------~G~V~~GrV~sG~Lk~Gd~v~l~p~~~------------~~~V~sI~~~~~~v~~a~aGdiv~I~l~- 468 (902)
.+.+ +|+|++|+|.+|+|++||.|.+.|.+. ..+|++|++++.++++|.|||+++|.+.
T Consensus 216 ~v~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~a~~G~~v~~~~~~ 295 (408)
T 1s0u_A 216 DINKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAAGNTILRKAHPGGLIGVGTTL 295 (408)
T ss_dssp CCCCSSCCGGGCCCCEEEEEEEESCEETTCEEEEEEEEEECCTTCCEEEEEEEECCEEEETTEEESEECSSSCEEEECSS
T ss_pred eecCCCcccccCceeEEEEEEEECeEecCCEEEEcCCcccccccccccccceeEEEEEEECCEEcCEEeCCCeEEEEecc
Confidence 8764 788999999999999999999988532 5789999999999999999999999886
Q ss_pred --ccccccceeeccccCCCCCCCCcccceeeeeeeccc---------CCcccccc-eecchhhhhhhhe
Q psy15197 469 --NYDQQNVSVGFLLSELSHPCPVSSKFEARIVVFNIT---------TPITIGYP-VTHDITHLTKAAI 525 (902)
Q Consensus 469 --~~~~~~i~kG~vL~~~~~~~~~~~~F~a~irvvHak---------g~ga~G~f-v~~~is~~~~A~i 525 (902)
++...++++|++|+++..+++....|++++.++++. ..+..||. ..+..+..+.+.+
T Consensus 296 ~~~~~~~~~~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~~l~~g~~~~~~~~t~~~~~~v 364 (408)
T 1s0u_A 296 DPYLTKSDALTGSVVGLPGTLPPIREKITIRANLLDRVVGTKEELKIEPLRTGEVLMLNIGTATTAGVI 364 (408)
T ss_dssp CGGGTGGGTTTTCEEESTTCSCCEEEEEEEEEEECCCCSSCSSTTCCCCCCTTCEEEEEETTEEEEEEE
T ss_pred CcccchhhccceeEEECCCCCCceeEEEEEEEEEEeccccccccccccCCCCCCEEEEEEcCCEEEEEE
Confidence 466788999999999888777788999999998774 67889987 5554444333433
No 31
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=100.00 E-value=1.6e-35 Score=338.04 Aligned_cols=264 Identities=23% Similarity=0.332 Sum_probs=215.6
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHH
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQD 329 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~ 329 (902)
.+.++|||||||++|...+..++..+|++|||+|++++.. ..|+.+++.++..++++++|+|+||+|+++ .+
T Consensus 74 ~~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~------~~qt~~~~~~~~~~~~~~iivviNK~Dl~~--~~ 145 (403)
T 3sjy_A 74 LRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFP------QPQTREHFVALGIIGVKNLIIVQNKVDVVS--KE 145 (403)
T ss_dssp EEEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSS------CHHHHHHHHHHHHHTCCCEEEEEECGGGSC--HH
T ss_pred cceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCC------cHHHHHHHHHHHHcCCCCEEEEEECccccc--hH
Confidence 3689999999999999999999999999999999998841 368999999999889878889999999986 33
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCcccHHHHHHh-cCCCCCCCCCCceEEEeeE
Q psy15197 330 RFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDN-FKTPSRPLTKPLRMSVSDI 408 (902)
Q Consensus 330 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L~~-l~~p~~~~~~pl~~~I~~i 408 (902)
...+..+++..+++..+. ..++++++||++|.|+.+ |++.|.. ++++....++|++++|.++
T Consensus 146 ~~~~~~~~i~~~l~~~~~--~~~~ii~vSA~~g~gi~~---------------L~~~l~~~l~~~~~~~~~~~~~~v~~~ 208 (403)
T 3sjy_A 146 EALSQYRQIKQFTKGTWA--ENVPIIPVSALHKINIDS---------------LIEGIEEYIKTPYRDLSQKPVMLVIRS 208 (403)
T ss_dssp HHHHHHHHHHHHHTTSTT--TTCCEEECBTTTTBSHHH---------------HHHHHHHHSCCCCCCTTSCCEEEEEEE
T ss_pred HHHHHHHHHHHHHHhhCC--CCCEEEEEECCCCcChHH---------------HHHHHHHhCCCCCCCCCCCcEEEEEEE
Confidence 344555566666654433 356899999999999998 8888876 7777777789999999999
Q ss_pred EeeCC--------CeEEEEEEEEeeEeeCCCEEEEccCCc------------EEEEEEEEEceEeeeeeccCCeEEEeee
Q psy15197 409 YKSTG--------SGYCIAGRVETGVILAGEKVMVQPQNE------------VTTVKAVYVDEMSVSAAYAGDNVSVTLL 468 (902)
Q Consensus 409 ~~v~g--------~G~V~~GrV~sG~Lk~Gd~v~l~p~~~------------~~~V~sI~~~~~~v~~a~aGdiv~I~l~ 468 (902)
|.+.+ .|+|++|+|.+|+|++||.|.+.|.+. ..+|++|++++.++++|.|||+|+|.+.
T Consensus 209 ~~v~~~~~~~~~~~G~v~~g~v~~G~~~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~a~~G~~v~~~l~ 288 (403)
T 3sjy_A 209 FDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRFGDEEFKEAKPGGLVAIGTY 288 (403)
T ss_dssp ECCCCTTCCSSSCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTEEESEECSSSCEEEEES
T ss_pred EeecCCCcccccCcCcEEEEEEEeCEEecCCEEEEeCCcccccccccccccccEEEEEEEECCEEcCEEeCCCEEEEEec
Confidence 98776 899999999999999999999998764 4799999999999999999999999875
Q ss_pred ---ccccccceeeccccCCCCCCCCcccceeeeeeecc---------cCCcccccc-eecchhhhhhhheecccCceeeE
Q psy15197 469 ---NYDQQNVSVGFLLSELSHPCPVSSKFEARIVVFNI---------TTPITIGYP-VTHDITHLTKAAIFSEIGKQTPV 535 (902)
Q Consensus 469 ---~~~~~~i~kG~vL~~~~~~~~~~~~F~a~irvvHa---------kg~ga~G~f-v~~~is~~~~A~if~~~gk~tpv 535 (902)
++...++.+|++|+++..+++....|++++.++++ +.....|+. ..+..+..+.+.+..- .+ ..+
T Consensus 289 ~~~~~~~~d~~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~gt~~~~~~v~~~-~~-~~~ 366 (403)
T 3sjy_A 289 LDPSLTKADNLLGSIITLADAEVPVLWNIRIKYNLLERVVGAKEMLKVDPIRAKETLMLSVGSSTTLGIVTSV-KK-DEI 366 (403)
T ss_dssp SCHHHHGGGTTTTCEEEETTCCCCEEEEEEEEEEECSBCTTCSSCCBCCCCCTTCEEEEEETTEEEEEEEEEE-CS-SEE
T ss_pred cccccchhhhccccEEeCCCCCCcceeEEEEEEEEEeccccccccccCCCCCCCCEEEEEECccEEEEEEEEe-cC-ceE
Confidence 46678899999999998888778899999999875 567788887 5554454444544432 22 235
Q ss_pred EEEEe
Q psy15197 536 AARFS 540 (902)
Q Consensus 536 ~vRFS 540 (902)
-+||.
T Consensus 367 ~~~l~ 371 (403)
T 3sjy_A 367 EVELR 371 (403)
T ss_dssp EEEEE
T ss_pred EEEeC
Confidence 55554
No 32
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=100.00 E-value=1.1e-36 Score=354.89 Aligned_cols=259 Identities=28% Similarity=0.420 Sum_probs=213.9
Q ss_pred cccCCeEEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCC
Q psy15197 232 ALNRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGV 311 (902)
Q Consensus 232 e~~rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i 311 (902)
|+++|+|++.....+.++++.++|||||||.+|...+..++..+|++|||||++++. ..|+.+++.++..+++
T Consensus 54 e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~-------~~qt~e~l~~~~~~~i 126 (482)
T 1wb1_A 54 SQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGP-------KTQTGEHMLILDHFNI 126 (482)
T ss_dssp ----------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCS-------CHHHHHHHHHHHHTTC
T ss_pred cccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCc-------cHHHHHHHHHHHHcCC
Confidence 378999999999999999999999999999999999999999999999999999984 4699999999999998
Q ss_pred CeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhc-CCCCCCceEecCCCccCCCCCCCCCCcccccccCcccHHHHHHhc
Q psy15197 312 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQA-GFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNF 390 (902)
Q Consensus 312 ~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~-~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L~~l 390 (902)
|. |+|+||+|+.+ .+.++.+.+++..+++.. ++. .++++++||++|.|+.+ |++.|...
T Consensus 127 p~-IvviNK~Dl~~--~~~~~~~~~~l~~~l~~~~~~~--~~~ii~vSA~~g~gI~~---------------L~~~L~~~ 186 (482)
T 1wb1_A 127 PI-IVVITKSDNAG--TEEIKRTEMIMKSILQSTHNLK--NSSIIPISAKTGFGVDE---------------LKNLIITT 186 (482)
T ss_dssp CB-CEEEECTTSSC--HHHHHHHHHHHHHHHHHSSSGG--GCCEEECCTTTCTTHHH---------------HHHHHHHH
T ss_pred CE-EEEEECCCccc--chhHHHHHHHHHHHHhhhcccc--cceEEEEECcCCCCHHH---------------HHHHHHHh
Confidence 86 69999999985 445666677777777765 442 45899999999999998 77777652
Q ss_pred -CCC--CCCCCCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCcEEEEEEEEEceEeeeeeccCCeEEEee
Q psy15197 391 -KTP--SRPLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYVDEMSVSAAYAGDNVSVTL 467 (902)
Q Consensus 391 -~~p--~~~~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~~~~~v~~a~aGdiv~I~l 467 (902)
+.+ .+..++|++++|+++|.+++.|+|++|+|.+|+|++||.|.+.|.+...+|++|++++.++++|.||+.|++.+
T Consensus 187 i~~~~~~~~~~~~~~~~v~~v~~~~g~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~~G~~v~~~l 266 (482)
T 1wb1_A 187 LNNAEIIRNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLPINMSTKVRSIQYFKESVMEAKAGDRVGMAI 266 (482)
T ss_dssp HHHSCCCCCSSSCCBCBCSCEECCSSCCCEECCCCCBSCCCSSEEECCTTTCCCEEECCBCGGGSCBCCCCSSCCCCEEC
T ss_pred hcCccccccccccccccceeEEEecCCceEEEEEEEEeEEeeCCEEEECCCCcEEEEeEEEECCeEeeEecCCCEEEEEe
Confidence 222 55567899999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred eccccccceeeccc-cCCCCCCCCcccceeeeeeecc-cCCcccccc-eecchh
Q psy15197 468 LNYDQQNVSVGFLL-SELSHPCPVSSKFEARIVVFNI-TTPITIGYP-VTHDIT 518 (902)
Q Consensus 468 ~~~~~~~i~kG~vL-~~~~~~~~~~~~F~a~irvvHa-kg~ga~G~f-v~~~is 518 (902)
.+++..++++|++| +.+. ++.....|+|++.+++. +..+..||. ..+..+
T Consensus 267 ~~~~~~~i~~Gdvl~~~~~-~~~~~~~~~a~v~~l~~~~~~l~~g~~~~l~~~t 319 (482)
T 1wb1_A 267 QGVDAKQIYRGXILTSKDT-KLQTVDKIVAKIKISDIFKYNLTPKMKVHLNVGM 319 (482)
T ss_dssp SSCCSSCCCSSCBCCCTTC-CCCCEEEEEECCCCCSSCCSCCCSSCEEEEEETT
T ss_pred cCCCHhhccccceEecCCC-CCceeeEEEEEEEEeccCCcccCCCCEEEEEEcc
Confidence 88888899999999 5554 45667899999998864 678889987 444333
No 33
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=100.00 E-value=9.7e-36 Score=351.25 Aligned_cols=238 Identities=22% Similarity=0.314 Sum_probs=176.6
Q ss_pred hhhhcccccccccccccCCeEEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCch
Q psy15197 218 CLVMRIVPLEGIASALNRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGG 297 (902)
Q Consensus 218 ~~~~d~~~~~~~~~e~~rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~ 297 (902)
.++||++++| ++|||||.++..++.|+++.|||||||||.||..++.++++.+|+||+||||.+| +..
T Consensus 72 ~~~~D~~~~E-----reRGITI~s~~~~~~~~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~G-------V~~ 139 (548)
T 3vqt_A 72 HATSDWMAME-----RERGISVTTSVMQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKG-------VEA 139 (548)
T ss_dssp ---------------------CTTTEEEEEETTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTB-------SCH
T ss_pred ccccCChHHH-----HHCCCcEeeceEEEEECCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCC-------ccc
Confidence 3567888877 9999999999999999999999999999999999999999999999999999999 558
Q ss_pred hhHHHHHHHHHhCCCeEEEEEecCCCCCchHHH-HHHHHHHHHH------------------------------------
Q psy15197 298 QTREHALLVRSLGVNQLGVVINKLDTVSWSQDR-FQEIVTKLGA------------------------------------ 340 (902)
Q Consensus 298 qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~-~~~i~~~l~~------------------------------------ 340 (902)
||+..++.+...++|.+ ++|||||....+..+ ++++.+.+..
T Consensus 140 qT~~v~~~a~~~~lp~i-~fINK~Dr~~ad~~~~~~~i~~~l~~~~~p~~~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~ 218 (548)
T 3vqt_A 140 QTRKLMDVCRMRATPVM-TFVNKMDREALHPLDVMADIEQHLQIECAPMTWPIGMGSSFKGTYDLLHKQLHLFSATHGGR 218 (548)
T ss_dssp HHHHHHHHHHHTTCCEE-EEEECTTSCCCCHHHHHHHHHHHHTSEEEESEEEESCGGGCCEEEETTTTEEEECC------
T ss_pred ccHHHHHHHHHhCCceE-EEEecccchhcchhHhhhhhhhhcCCceEeEEeeeecCCcccceEeeeeeeeeecccccCCc
Confidence 99999999999999855 999999987654332 2222222110
Q ss_pred -------------------------------hhhhcC--------CCCCCceEecCCCccCCCCCCCCCCcccccccCcc
Q psy15197 341 -------------------------------FLKQAG--------FRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGP 381 (902)
Q Consensus 341 -------------------------------~l~~~~--------~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~ 381 (902)
++...+ .....+|+++.||+++.|+..
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~g~~~PV~~gSA~~~~Gv~~-------------- 284 (548)
T 3vqt_A 219 IQSGIVIHGADDPQLDEYLGDQAEQLRMDLALLEEAGTPFDEERYLKGELTPVFFGSAINNFGVRE-------------- 284 (548)
T ss_dssp -CCCEECCSTTCTHHHHHHGGGHHHHHHHHHHHHHHCCCCCHHHHHTTSEEEEEECBGGGTBSHHH--------------
T ss_pred ccccccccccchHHHHHHHHHHHHHhhhHHHHHhhccCchhHHHHHhCCcceeeecccccCcCHHH--------------
Confidence 000000 012346899999999999998
Q ss_pred cHHHHHHh-cCCCCC---------CCCCCceEEEeeEEee---CCCeEEEEEEEEeeEeeCCCEEEEccCCcEEEEEEEE
Q psy15197 382 CLLDVIDN-FKTPSR---------PLTKPLRMSVSDIYKS---TGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVY 448 (902)
Q Consensus 382 ~Lle~L~~-l~~p~~---------~~~~pl~~~I~~i~~v---~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~ 448 (902)
|++.+.. +|+|.. +.+.|+...|+++... ++.|+++++||+||+|+.|+.|++...+...+|..+.
T Consensus 285 -LLd~iv~~~PsP~~~~~~~~~~~~~~~p~~a~vfKi~~~~~~~~~Grla~~RV~sG~l~~g~~v~~~~~~~~~rv~~l~ 363 (548)
T 3vqt_A 285 -MLDMFVEFAPGPQPRPAATRVVEPGEEAFTGVVFKIQANMDKAHRDRMAFLRICSGTFTRGMRLKHHRTGKDVTVANAT 363 (548)
T ss_dssp -HHHHHHHHSCCSCCEEBSSSEECTTCSSCEEEEEEEECC-------CEEEEEEEESCEETTCEEEETTTTEEEECTTCE
T ss_pred -HHHHHHHhCCCCCCccccccccCCCCcCceEEEEEEEccCCcCCCCeEEEEEEecceecCCCEEEeeccccccccchhh
Confidence 7877755 555532 2367899999998876 7899999999999999999999999988888888877
Q ss_pred E----ceEeeeeeccCCeEEEeeeccccccceeeccccCCCCC
Q psy15197 449 V----DEMSVSAAYAGDNVSVTLLNYDQQNVSVGFLLSELSHP 487 (902)
Q Consensus 449 ~----~~~~v~~a~aGdiv~I~l~~~~~~~i~kG~vL~~~~~~ 487 (902)
. .+.++++|.|||+|+|... ++++.|++|++...+
T Consensus 364 ~~~g~~~~~v~~a~AGdIvai~gl----~~~~~GDTl~~~~~~ 402 (548)
T 3vqt_A 364 IFMAQDRTGVEEAFPGDIIGIPNH----GTIKIGDTFTESKEV 402 (548)
T ss_dssp ECCCSSCCSSCEECTTCEEEEECS----SCCCTTCEEESSSSC
T ss_pred hhccccccccCEEecCCEEEecCC----ccCccCCEecCCCCc
Confidence 5 4578999999999999876 788999999987654
No 34
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=100.00 E-value=3e-33 Score=340.36 Aligned_cols=239 Identities=21% Similarity=0.279 Sum_probs=175.0
Q ss_pred hhhhcccccccccccccCCeEEeeeEEEEEEC-------CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccc
Q psy15197 218 CLVMRIVPLEGIASALNRGITMDVGQSQFETK-------TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFE 290 (902)
Q Consensus 218 ~~~~d~~~~~~~~~e~~rGiTid~~~~~~~~~-------~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E 290 (902)
..+||++++| ++|||||.++..++.|+ ++.|||||||||.||..++.++++.+|+||+||||.+|
T Consensus 50 ~~~~D~~~~E-----~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveG--- 121 (709)
T 4fn5_A 50 AATTDWMVQE-----QERGITITSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSG--- 121 (709)
T ss_dssp -----------------------CCEEEEEECCTTSCSCCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTC---
T ss_pred CccCCChHHH-----HHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCC---
Confidence 4567888777 99999999999999986 68999999999999999999999999999999999999
Q ss_pred cccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHHH-HHHHHHHH-------------------------------
Q psy15197 291 TGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDR-FQEIVTKL------------------------------- 338 (902)
Q Consensus 291 ~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~-~~~i~~~l------------------------------- 338 (902)
+..||+..++.+...++|++ +||||||....+... ++++.+.+
T Consensus 122 ----V~~qT~~v~~~a~~~~lp~i-~~iNKiDr~~a~~~~~~~ei~~~l~~~~~~~~~pi~~~~~~~g~vd~~~~~~~~~ 196 (709)
T 4fn5_A 122 ----VEPQSETVWRQANKYGVPRI-VYVNKMDRQGANFLRVVEQIKKRLGHTPVPVQLAIGAEENFVGQVDLIKMKAIYW 196 (709)
T ss_dssp ----SCHHHHHHHHHHHHHTCCEE-EEEECSSSTTCCHHHHHHHHHHHHCSCEEESEEEESSSTTCCEEEETTTTEEEEE
T ss_pred ----CchhHHHHHHHHHHcCCCeE-EEEccccccCccHHHHHHHhhhhcccceeeeecccCchhccceEEEEeeeeEEEe
Confidence 55899999999999999865 999999976433211 11111111
Q ss_pred -----------------------------------------HHhhhhcC--------------CCCCCceEecCCCccCC
Q psy15197 339 -----------------------------------------GAFLKQAG--------------FRDSDIEYVPCSGLTGE 363 (902)
Q Consensus 339 -----------------------------------------~~~l~~~~--------------~~~~~~~ii~iSA~~G~ 363 (902)
..+++... .....+|+++.||+++.
T Consensus 197 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pv~~gsa~~~~ 276 (709)
T 4fn5_A 197 NDDDKGMTYREEEIPAELKDLAEEWRSSMVEAAAEANEELMNKYLEEGELSEAEIKEGLRLRTLACEIVPAVCGSSFKNK 276 (709)
T ss_dssp EC--CCCEEEECCCCHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTB
T ss_pred ecccCCceeccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCccHHHHHHHHHHhhhhceeeeeeeeecccCC
Confidence 00111000 11234688999999999
Q ss_pred CCCCCCCCcccccccCcccHHHHH-HhcCCCC--------------------CCCCCCceEEEeeEEeeCCCeEEEEEEE
Q psy15197 364 NLTTPSQVPALTSWYSGPCLLDVI-DNFKTPS--------------------RPLTKPLRMSVSDIYKSTGSGYCIAGRV 422 (902)
Q Consensus 364 gI~~~~~~~~~~~w~~g~~Lle~L-~~l~~p~--------------------~~~~~pl~~~I~~i~~v~g~G~V~~GrV 422 (902)
|+.. |++.+ +.+|+|. ...+.|+.+.|+++..+++.|+++++||
T Consensus 277 gv~~---------------lLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~d~~~pl~~~VfK~~~d~~~G~la~~RV 341 (709)
T 4fn5_A 277 GVPL---------------VLDAVIDYLPAPTEIPAIKGVSPDDETVEDERHADDNEPFSSLAFKIATDPFVGTLTFARV 341 (709)
T ss_dssp THHH---------------HHHHHHHHSCCTTSSCCEECBCCC-CCSCCEECSCTTSCCEEEEEECCCBTTTBCCCEEEE
T ss_pred chHH---------------HHHHHHhhCCCCcccccccccCCccccccccccCCccCcceEEEEEeecccCCCceEEEec
Confidence 9887 67766 4556552 2346899999999999999999999999
Q ss_pred EeeEeeCCCEEEEccCCcEEEEEEEEE----ceEeeeeeccCCeEEEeeeccccccceeeccccCCCCCC
Q psy15197 423 ETGVILAGEKVMVQPQNEVTTVKAVYV----DEMSVSAAYAGDNVSVTLLNYDQQNVSVGFLLSELSHPC 488 (902)
Q Consensus 423 ~sG~Lk~Gd~v~l~p~~~~~~V~sI~~----~~~~v~~a~aGdiv~I~l~~~~~~~i~kG~vL~~~~~~~ 488 (902)
+||+|+.|++|++...++..+|..+.. ...++++|.||++|+|.+. +++.+|++|++...+.
T Consensus 342 ~sGtl~~G~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~Gl----~~~~~gdTl~~~~~~~ 407 (709)
T 4fn5_A 342 YSGVLSSGDSVLNSVKGKKERVGRMVQMHANQREEIKEVRAGDIAALIGM----KDVTTGDTLCSIEKPI 407 (709)
T ss_dssp EESCEETTCBCBCTTTCCCCBCCCEECCCSSCCCEESEECTTCEEEECSC----SSCCTTCEEECSSSCC
T ss_pred cCCCCCCCCEEEEecCCcEEeecceeEeecceeeEeeeecCCCeeeecCC----CcCccCCEecCCCccc
Confidence 999999999999888777777877764 5678999999999999876 6789999999766543
No 35
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.98 E-value=1.3e-31 Score=317.30 Aligned_cols=224 Identities=24% Similarity=0.312 Sum_probs=179.0
Q ss_pred ccCCeEEeeeEEEEEEC-----CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHH
Q psy15197 233 LNRGITMDVGQSQFETK-----TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVR 307 (902)
Q Consensus 233 ~~rGiTid~~~~~~~~~-----~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~ 307 (902)
+++|+|+......+.|. .+.++|||||||.+|...+.++++.+|++|||||++++ ...|+.+++..+.
T Consensus 50 rerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~g-------v~~qt~~~~~~a~ 122 (600)
T 2ywe_A 50 RERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQG-------IEAQTVANFWKAV 122 (600)
T ss_dssp ------CCCCSEEEEEECTTSCEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTB-------CCHHHHHHHHHHH
T ss_pred hcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCC-------ccHHHHHHHHHHH
Confidence 78999998888777775 37999999999999999999999999999999999998 3468999888888
Q ss_pred HhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCcccHHHHH
Q psy15197 308 SLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVI 387 (902)
Q Consensus 308 ~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L 387 (902)
..++| +|+|+||+|+.+.+. .+..+++... +++. ..+++++||++|.|+.+ |++.|
T Consensus 123 ~~~ip-iIvviNKiDl~~a~~---~~v~~el~~~---lg~~--~~~vi~vSAktg~GI~~---------------Lle~I 178 (600)
T 2ywe_A 123 EQDLV-IIPVINKIDLPSADV---DRVKKQIEEV---LGLD--PEEAILASAKEGIGIEE---------------ILEAI 178 (600)
T ss_dssp HTTCE-EEEEEECTTSTTCCH---HHHHHHHHHT---SCCC--GGGCEECBTTTTBSHHH---------------HHHHH
T ss_pred HCCCC-EEEEEeccCccccCH---HHHHHHHHHh---hCCC--cccEEEEEeecCCCchH---------------HHHHH
Confidence 88877 679999999986443 2333334332 3332 23589999999999998 66665
Q ss_pred -HhcCCCCCCCCCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCcEEEEEEEEE---ceEeeeeeccCCeE
Q psy15197 388 -DNFKTPSRPLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYV---DEMSVSAAYAGDNV 463 (902)
Q Consensus 388 -~~l~~p~~~~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~---~~~~v~~a~aGdiv 463 (902)
+.+++|....+.|+++.|++++.+++.|+|++|||++|+|++||.|.+.+.+...+|.+|.. ...+++++.|||++
T Consensus 179 ~~~lp~p~~~~~~pl~~lV~~~~~d~~~G~v~~~rV~sG~l~~Gd~I~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdi~ 258 (600)
T 2ywe_A 179 VNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDKIMLMSTGKEYEVTEVGAQTPKMTKFDKLSAGDVG 258 (600)
T ss_dssp HHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESEECTTCEEEETTTTEEEECCEEEEESSSEEEESCEETTCEE
T ss_pred HHhcccccccccCCcceeEEEEeecccceEEEEEEEEeCEEecCCEEEeccccceEeeecccccCCCceECCEEecCcee
Confidence 56777777778999999999999999999999999999999999999999988888888875 45789999999988
Q ss_pred EEeeeccccccceeeccccCCCCC
Q psy15197 464 SVTLLNYDQQNVSVGFLLSELSHP 487 (902)
Q Consensus 464 ~I~l~~~~~~~i~kG~vL~~~~~~ 487 (902)
.+.......+++++|++|+...++
T Consensus 259 ~v~~gi~~~~~~~~GDtl~~~~~~ 282 (600)
T 2ywe_A 259 YIAASIKDVRDIRIGDTITHAKNP 282 (600)
T ss_dssp EEESSCCCTTSSCTTCEEEESSSC
T ss_pred eeeccccchhhccCCCEEEeCCCc
Confidence 876322245789999999987665
No 36
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.98 E-value=1.7e-34 Score=347.03 Aligned_cols=235 Identities=23% Similarity=0.328 Sum_probs=184.7
Q ss_pred hhhhcccccccccccccCCeEEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCch
Q psy15197 218 CLVMRIVPLEGIASALNRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGG 297 (902)
Q Consensus 218 ~~~~d~~~~~~~~~e~~rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~ 297 (902)
.++||++++| ++|||||.++..++.|+++.|||||||||.||..++.++++.+|++|+||||.+| +..
T Consensus 39 ~~~~D~~~~E-----reRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~G-------V~~ 106 (638)
T 3j25_A 39 TTRTDNTLLE-----RQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDG-------VQA 106 (638)
T ss_dssp CCSTTCSTTH-----HHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCT-------TCS
T ss_pred CcccCCcHHH-----HhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCC-------CcH
Confidence 3457777777 9999999999999999999999999999999999999999999999999999999 457
Q ss_pred hhHHHHHHHHHhCCCeEEEEEecCCCCCchHHH-HHHHHHH--------------------------------------H
Q psy15197 298 QTREHALLVRSLGVNQLGVVINKLDTVSWSQDR-FQEIVTK--------------------------------------L 338 (902)
Q Consensus 298 qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~-~~~i~~~--------------------------------------l 338 (902)
||+.+++.+...++|++ ++|||||....+... ++++.+. +
T Consensus 107 qT~~v~~~a~~~~lp~i-~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~ 185 (638)
T 3j25_A 107 QTRILFHALRKMGIPTI-FFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLL 185 (638)
T ss_dssp HHHHHHHHHHHHTCSCE-ECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHcCCCeE-EEEeccccccCCHHHHHHHHHHHhCCCccccceeEeeccccccccchhhhhhhhhcccHHHH
Confidence 99999999999999965 899999986543221 1111110 0
Q ss_pred HHhhhhcCC--------------CCCCceEecCCCccCCCCCCCCCCcccccccCcccHHHHHH-hcCCCCCCCCCCceE
Q psy15197 339 GAFLKQAGF--------------RDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVID-NFKTPSRPLTKPLRM 403 (902)
Q Consensus 339 ~~~l~~~~~--------------~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L~-~l~~p~~~~~~pl~~ 403 (902)
..++..... ....+|+++.||+++.|+.. |++.+. .+++|....+.|+.+
T Consensus 186 e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~---------------LLd~i~~~~p~p~~~~~~~~~~ 250 (638)
T 3j25_A 186 EKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDN---------------LIEVITNKFYSSTHRGPSELCG 250 (638)
T ss_dssp HHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHH---------------HHHHHHHSCCCSGGGSCCCCCB
T ss_pred hhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchh---------------HhhhhhccccCcccchhhhhcc
Confidence 111111000 01236899999999999998 777775 466666666789999
Q ss_pred EEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCcEEEEEEEEE----ceEeeeeeccCCeEEEeeeccccccceeec
Q psy15197 404 SVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYV----DEMSVSAAYAGDNVSVTLLNYDQQNVSVGF 479 (902)
Q Consensus 404 ~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~----~~~~v~~a~aGdiv~I~l~~~~~~~i~kG~ 479 (902)
.|+++..+++.|+++++||++|+|+.|+.|++...+. .++..+.. ...++++|.|||+++|.+ ..++.|+
T Consensus 251 ~Vfk~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~-~~v~~l~~~~g~~~~~v~~a~aGdIv~i~g-----~~~~~~~ 324 (638)
T 3j25_A 251 NVFKIEYTKKRQRLAYIRLYSGVLHLRDSVRVSEKEK-IKVTEMYTSINGELCKIDRAYSGEIVILQN-----EFLKLNS 324 (638)
T ss_dssp EEBCCCCCSTTCCCCBCCBSSBCCCSCCCSSSCCCCC-SSBCCCCSSCCCCBSCCCTTBCCCCSCCCS-----SSCSSEE
T ss_pred eeeeeeeeccCceEEEEEEEcCcccCCCccccccCcc-eeEEeeecccccccccccccccceEEEEec-----cccccCc
Confidence 9999999999999999999999999999998765543 45555543 456889999999988765 4567788
Q ss_pred cccCCCC
Q psy15197 480 LLSELSH 486 (902)
Q Consensus 480 vL~~~~~ 486 (902)
++++...
T Consensus 325 tl~d~~~ 331 (638)
T 3j25_A 325 VLGDTKL 331 (638)
T ss_dssp CSSSSSS
T ss_pred eecCCCC
Confidence 8887654
No 37
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.98 E-value=5e-31 Score=312.87 Aligned_cols=224 Identities=22% Similarity=0.335 Sum_probs=176.7
Q ss_pred ccCCeEEeeeEEEEEEC-----CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHH
Q psy15197 233 LNRGITMDVGQSQFETK-----TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVR 307 (902)
Q Consensus 233 ~~rGiTid~~~~~~~~~-----~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~ 307 (902)
+++|+|+......+.|. ++.++|||||||.+|...+..+++.+|++|+|+|++++. ..|+..++..+.
T Consensus 48 rerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv-------~~qt~~~~~~~~ 120 (599)
T 3cb4_D 48 RERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGV-------EAQTLANCYTAM 120 (599)
T ss_dssp ---------CEEEEEEECTTSCEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCC-------CTHHHHHHHHHH
T ss_pred hcccceeeeeEEEEEEecCCCCeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCC-------CHHHHHHHHHHH
Confidence 88999999998888875 379999999999999999999999999999999999984 468888888888
Q ss_pred HhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCcccHHHHH
Q psy15197 308 SLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVI 387 (902)
Q Consensus 308 ~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L 387 (902)
..++| +|+|+||+|+.+.+. .+..+++...+ ++. ..+++++||++|.|+.+ |++.|
T Consensus 121 ~~~ip-iIvViNKiDl~~a~~---~~v~~ei~~~l---g~~--~~~vi~vSAktg~GI~~---------------Ll~~I 176 (599)
T 3cb4_D 121 EMDLE-VVPVLNKIDLPAADP---ERVAEEIEDIV---GID--ATDAVRCSAKTGVGVQD---------------VLERL 176 (599)
T ss_dssp HTTCE-EEEEEECTTSTTCCH---HHHHHHHHHHT---CCC--CTTCEEECTTTCTTHHH---------------HHHHH
T ss_pred HCCCC-EEEeeeccCcccccH---HHHHHHHHHHh---CCC--cceEEEeecccCCCchh---------------HHHHH
Confidence 88876 679999999986443 23333343332 332 12579999999999998 66665
Q ss_pred -HhcCCCCCCCCCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCcEEEEEEEEE---ceEeeeeeccCCeE
Q psy15197 388 -DNFKTPSRPLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYV---DEMSVSAAYAGDNV 463 (902)
Q Consensus 388 -~~l~~p~~~~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~---~~~~v~~a~aGdiv 463 (902)
+.+++|....+.|+++.|++++.+++.|++++|+|++|+|++||.+.+.+.+...+|.+|.. ...+++++.+||++
T Consensus 177 ~~~lp~p~~~~~~p~~alI~d~~~d~~~G~v~~~rV~sG~l~~Gd~v~~~~~~~~~~v~~i~~~~~~~~~~~~~~aGdi~ 256 (599)
T 3cb4_D 177 VRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKVKVMSTGQTYNADRLGIFTPKQVDRTELKCGEVG 256 (599)
T ss_dssp HHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESCEESSCEEEETTTCCEEECCEEEEESSSEEECSEECTTCEE
T ss_pred hhcCCCccccccCCceeeeeeccccccccEEEEEEEEeCEEecCCEEEeccccceeEEeeeeeccCCceECCEEcCCCee
Confidence 55777777778999999999999999999999999999999999999999998888888876 45788999999988
Q ss_pred EEeeeccccccceeeccccCCCCC
Q psy15197 464 SVTLLNYDQQNVSVGFLLSELSHP 487 (902)
Q Consensus 464 ~I~l~~~~~~~i~kG~vL~~~~~~ 487 (902)
.+.......+++++|++|+...++
T Consensus 257 ~~~~gi~~~~~~~~GDtl~~~~~~ 280 (599)
T 3cb4_D 257 WLVCAIKDIHGAPVGDTLTLARNP 280 (599)
T ss_dssp EEECCCSSGGGSCTTCEEEESSSC
T ss_pred EeeccccccccCccCCEeeecCCc
Confidence 775332345789999999887654
No 38
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.97 E-value=4.2e-31 Score=310.20 Aligned_cols=225 Identities=21% Similarity=0.231 Sum_probs=179.4
Q ss_pred ccCCeEEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCC
Q psy15197 233 LNRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVN 312 (902)
Q Consensus 233 ~~rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~ 312 (902)
+++|+|+......+.++++.++|||||||.+|...+..+++.+|++|+|+|++.+ ...++..++..+...++|
T Consensus 64 ~~~GiTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g-------~~~~t~~~~~~~~~~~iP 136 (528)
T 3tr5_A 64 KQRGISVTTSVMQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKG-------VEPRTIKLMEVCRLRHTP 136 (528)
T ss_dssp HHHCCSSSSSEEEEEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTC-------SCHHHHHHHHHHHTTTCC
T ss_pred hcCCeeEEEeEEEEEeCCEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCC-------CCHHHHHHHHHHHHcCCC
Confidence 7899999999999999999999999999999999999999999999999999998 346888888888888876
Q ss_pred eEEEEEecCCCCCchHH-HHHHHHHHHHHh--------------------------------------------------
Q psy15197 313 QLGVVINKLDTVSWSQD-RFQEIVTKLGAF-------------------------------------------------- 341 (902)
Q Consensus 313 ~iIVviNKiDl~~~~~~-~~~~i~~~l~~~-------------------------------------------------- 341 (902)
+|+|+||+|+...+.. .++++.+.+...
T Consensus 137 -iivviNK~Dl~~~~~~~~l~ei~~~l~~~~~~~~~pig~~~~f~gv~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (528)
T 3tr5_A 137 -IMTFINKMDRDTRPSIELLDEIESILRIHCAPVTWPIGMGKYFKGIYHLIEDAIYLYQPGKHERVGESERIEGINNPEL 215 (528)
T ss_dssp -EEEEEECTTSCCSCHHHHHHHHHHHHCCEEEESEEEESCGGGCCEEEETTTTEEEECCTTSSSSTTCSCEEECTTCHHH
T ss_pred -EEEEEeCCCCccccHHHHHHHHHHhhCCCceeeecccccCCceeEEEEeecCEEEEecCCCCCcccccccccccchHHH
Confidence 6699999999753322 223332222100
Q ss_pred -----------hh--------------hcCCCCCCceEecCCCccCCCCCCCCCCcccccccCcccHHHHHHh-cCCCCC
Q psy15197 342 -----------LK--------------QAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDN-FKTPSR 395 (902)
Q Consensus 342 -----------l~--------------~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L~~-l~~p~~ 395 (902)
++ ..-.....+|++++||++|.||.+ |++.|.. +++|..
T Consensus 216 ~~~l~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~PV~~gSA~~~~GV~~---------------Lld~i~~~~p~p~~ 280 (528)
T 3tr5_A 216 DKKLGDLASELRNEIELVKGASHPFEREGYLKGELTPIFFGSAINNFGVGE---------------LLDAFVKEAPPPQG 280 (528)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHSCCCCHHHHHTTSEEEEEECBGGGTBSHHH---------------HHHHHHHHSCCCCC
T ss_pred HHHHHHHHHHHhhhcchhhhhhhHHHHHHHhcCceeEEEeccccCCccHHH---------------HHHHHHHhCCCCCc
Confidence 00 000012235899999999999998 7777755 444432
Q ss_pred C---------CCCCceEEEeeEEe--eC-CCeEEEEEEEEeeEeeCCCEEEEccCCcEEEEEEEEE----ceEeeeeecc
Q psy15197 396 P---------LTKPLRMSVSDIYK--ST-GSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYV----DEMSVSAAYA 459 (902)
Q Consensus 396 ~---------~~~pl~~~I~~i~~--v~-g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~----~~~~v~~a~a 459 (902)
. .+.|+...|+++.. ++ ++|+++++||++|+|+.|+.|++.+.+...+|.++.. .+.++++|.|
T Consensus 281 ~~~~~~~~~~~~~~~~~~VFKi~~~~dp~~~g~l~~~RV~sG~l~~g~~v~~~~~~~~~rv~~~~~~~~~~~~~v~~a~a 360 (528)
T 3tr5_A 281 RETNSRLVKPEEEKFSGFVFKIQANMDPGHRDRIAFLRIASGQYQKGMKAYHVRLKKEIQINNALTFMAGKRENAEEAWP 360 (528)
T ss_dssp BCBSSSCBCTTSSSCEEEEEEEEECCC-CCCCEEEEEEEEESCEETTEEEEETTTTEEEEESSCBCCBTTCSSCCSEECT
T ss_pred ccccceeeCCCcccceeEEEEEecccCccCCceEEEEEEecCeEcCCCEEEecCCCceEEEeeeEEEeCCCeeECCEECC
Confidence 1 25789999999885 67 9999999999999999999999999999889988875 5678999999
Q ss_pred CCeEEEeeeccccccceeeccccCC
Q psy15197 460 GDNVSVTLLNYDQQNVSVGFLLSEL 484 (902)
Q Consensus 460 Gdiv~I~l~~~~~~~i~kG~vL~~~ 484 (902)
||+++|... ++++.|++|+..
T Consensus 361 GdI~~~~~l----~~~~~GDtl~~~ 381 (528)
T 3tr5_A 361 GDIIGLHNH----GTIQIGDTFTQG 381 (528)
T ss_dssp TCEEEEEES----SSCCTTCEEESS
T ss_pred CCEEEEcCC----CCCccCCEEcCC
Confidence 999998765 678999999874
No 39
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.97 E-value=9.8e-30 Score=308.45 Aligned_cols=225 Identities=20% Similarity=0.230 Sum_probs=181.3
Q ss_pred ccCCeEEeeeEEEEEECC-------eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHH
Q psy15197 233 LNRGITMDVGQSQFETKT-------KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALL 305 (902)
Q Consensus 233 ~~rGiTid~~~~~~~~~~-------~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~ 305 (902)
+++|+|+......+.+++ +.++|||||||.+|...+..+++.+|++|+|||++.+. ..++..++..
T Consensus 57 ~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv-------~~qt~~~~~~ 129 (704)
T 2rdo_7 57 QERGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGV-------QPQSETVWRQ 129 (704)
T ss_pred HhcCceeeeceEEEEECCccccCCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCC-------cHHHHHHHHH
Confidence 789999999999999988 99999999999999999999999999999999999984 3688888888
Q ss_pred HHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhh-----------------------------------------
Q psy15197 306 VRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQ----------------------------------------- 344 (902)
Q Consensus 306 l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~----------------------------------------- 344 (902)
+...++| +++|+||+|+...+. .++.+++...+..
T Consensus 130 ~~~~~ip-~ilviNKiD~~~~~~---~~~~~~l~~~l~~~~~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~ 205 (704)
T 2rdo_7 130 ANKYKVP-RIAFVNKMDRMGANF---LKVVNQIKTRLGANPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYE 205 (704)
T ss_pred HHHcCCC-EEEEEeCCCcccccH---HHHHHHHHHHhCCCceeEEccccccccccceeehhhhhhhcccCccCCcceEEe
Confidence 8888887 558999999875332 2222222222110
Q ss_pred -----------------------------------cC--------------CCCCCceEecCCCccCCCCCCCCCCcccc
Q psy15197 345 -----------------------------------AG--------------FRDSDIEYVPCSGLTGENLTTPSQVPALT 375 (902)
Q Consensus 345 -----------------------------------~~--------------~~~~~~~ii~iSA~~G~gI~~~~~~~~~~ 375 (902)
.. .....+|++++||++|.|+..
T Consensus 206 ~~~~~~~~~~~~~~~~l~e~~ae~dd~l~e~~l~~~~l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~-------- 277 (704)
T 2rdo_7 206 DIPADMVELANEWHQNLIESAAEASEELMEKYLGGEELTEAEIKGALRQRVLNNEIILVTCGSAFKNKGVQA-------- 277 (704)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCeeEEEEeecccCccHHH--------
Confidence 00 001236899999999999987
Q ss_pred cccCcccHHHHHHh-cCCCCC--------------------CCCCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEE
Q psy15197 376 SWYSGPCLLDVIDN-FKTPSR--------------------PLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVM 434 (902)
Q Consensus 376 ~w~~g~~Lle~L~~-l~~p~~--------------------~~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~ 434 (902)
|++.|.. +|+|.. ..+.|+.+.|++++.+++.|++++|||++|+|+.|+.|+
T Consensus 278 -------LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~VfK~~~d~~~G~~~~~RV~sG~l~~g~~v~ 350 (704)
T 2rdo_7 278 -------MLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEPFSALAFKIATDPFVGNLTFFRVYSGVVNSGDTVL 350 (704)
T ss_pred -------HHHHHHHHCCChhhcccccccCCcccccccccccCCCCceEEEEEEEEEcCCCceEEEEEEEeeeecCCCEEE
Confidence 7776654 555432 146799999999999999999999999999999999999
Q ss_pred EccCCcEEEEEEEEE----ceEeeeeeccCCeEEEeeeccccccceeeccccCCCCC
Q psy15197 435 VQPQNEVTTVKAVYV----DEMSVSAAYAGDNVSVTLLNYDQQNVSVGFLLSELSHP 487 (902)
Q Consensus 435 l~p~~~~~~V~sI~~----~~~~v~~a~aGdiv~I~l~~~~~~~i~kG~vL~~~~~~ 487 (902)
+.+.+...+|.+|.. ...++++|.|||+++|.+. +++++|++|++..++
T Consensus 351 ~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~gl----~~~~~GdTl~~~~~~ 403 (704)
T 2rdo_7 351 NSVKAARERFGRIVQMHANKREEIKEVRAGDIAAAIGL----KDVTTGDTLCDPDAP 403 (704)
T ss_pred eCCCCcEEEeceEEEEeCCCceEcceeCCCCEEEEeCc----ccCccCCEEeCCCcc
Confidence 998888889998875 4689999999999999865 678999999976543
No 40
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.97 E-value=4.4e-29 Score=302.34 Aligned_cols=225 Identities=21% Similarity=0.204 Sum_probs=175.2
Q ss_pred ccCCeEEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCC
Q psy15197 233 LNRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVN 312 (902)
Q Consensus 233 ~~rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~ 312 (902)
+++|+|+......+.++++.++|||||||.+|...+..+++.+|++|+|+|++.+. ..++...+..+...++|
T Consensus 59 ~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~-------~~~t~~~~~~~~~~~~p 131 (691)
T 1dar_A 59 RERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGV-------EPQSETVWRQAEKYKVP 131 (691)
T ss_dssp --------CCEEEEEETTEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCS-------CHHHHHHHHHHHHTTCC
T ss_pred hhcccccccceEEEEECCeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCc-------chhhHHHHHHHHHcCCC
Confidence 78999999999999999999999999999999999999999999999999999984 36888888888888877
Q ss_pred eEEEEEecCCCCCchHHHHHHHHHHHHHhhhh------------------------------------------------
Q psy15197 313 QLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQ------------------------------------------------ 344 (902)
Q Consensus 313 ~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~------------------------------------------------ 344 (902)
+++|+||+|+...+. .++.+++...+..
T Consensus 132 -~ivviNKiD~~~~~~---~~~~~~l~~~l~~~~~~~~~Pi~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 207 (691)
T 1dar_A 132 -RIAFANKMDKTGADL---WLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLD 207 (691)
T ss_dssp -EEEEEECTTSTTCCH---HHHHHHHHHTTCCCEEECEEEESCGGGCCEEEETTTTEEEEECSTTSCCEEEECCCGGGHH
T ss_pred -EEEEEECCCcccCCH---HHHHHHHHHHhCCCccceeccccCCCcccchhhhhcceeeEeccCCCceeEEecCCHHHHH
Confidence 558999999875432 2222222222210
Q ss_pred ---------------------------cC--------------CCCCCceEecCCCccCCCCCCCCCCcccccccCcccH
Q psy15197 345 ---------------------------AG--------------FRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCL 383 (902)
Q Consensus 345 ---------------------------~~--------------~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~L 383 (902)
.. .....+|++++||++|.|+.. |
T Consensus 208 ~~~~~r~~l~e~~~e~dd~l~e~~l~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~---------------L 272 (691)
T 1dar_A 208 QAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQL---------------L 272 (691)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTSCEEEEECBGGGTBSHHH---------------H
T ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHCCCCCCHHHHHHHHHHHHHhCcEeEEEEeecccCcCHHH---------------H
Confidence 00 001226899999999999987 7
Q ss_pred HHHHHh-cCCCCC------------------CCCCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCcEEEE
Q psy15197 384 LDVIDN-FKTPSR------------------PLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTV 444 (902)
Q Consensus 384 le~L~~-l~~p~~------------------~~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~~V 444 (902)
++.|.. +|+|.. ..+.|+.+.|++++.+++.|+++++||++|+|+.|+.|++...+...+|
T Consensus 273 Ld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~p~~~~Vfk~~~d~~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~~v 352 (691)
T 1dar_A 273 LDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERV 352 (691)
T ss_dssp HHHHHHHSCCTTTSCCEEEECSSSCEEEECCCTTSCCEEEEEEEEEETTTEEEEEEEEEESEEESSCEEEETTTTEEEEC
T ss_pred HHHHHHhCCChhhcccccccCCCccccccccCCCCCcEEEEEEEEEcCCCCcEEEEEEeeeeEecCCEEEecCCCcEEEE
Confidence 777654 555543 2467999999999999999999999999999999999999988888888
Q ss_pred EEEEE----ceEeeeeeccCCeEEEeeeccccccceeeccccCCCCC
Q psy15197 445 KAVYV----DEMSVSAAYAGDNVSVTLLNYDQQNVSVGFLLSELSHP 487 (902)
Q Consensus 445 ~sI~~----~~~~v~~a~aGdiv~I~l~~~~~~~i~kG~vL~~~~~~ 487 (902)
..|.. ...++++|.|||+++|.+. +++++|++|++...+
T Consensus 353 ~~l~~~~g~~~~~v~~~~aGdI~~i~gl----~~~~~Gdtl~~~~~~ 395 (691)
T 1dar_A 353 ARLLRMHANHREEVEELKAGDLGAVVGL----KETITGDTLVGEDAP 395 (691)
T ss_dssp CEEEEECSSCEEEESEEETTCEEEEECC----SSCCTTCEEEETTCC
T ss_pred ceEEEEeCCCceEcceecCCCEEEEeCc----ccCccCCEEecCCCc
Confidence 88875 4689999999999999875 677899999976554
No 41
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.97 E-value=9.1e-30 Score=299.16 Aligned_cols=227 Identities=21% Similarity=0.247 Sum_probs=169.5
Q ss_pred ccCCeEEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCC
Q psy15197 233 LNRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVN 312 (902)
Q Consensus 233 ~~rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~ 312 (902)
+++|+|++.....+.++++.++|||||||.+|...+..++..+|++|+|+|++++. ..++.+++..+...++|
T Consensus 64 ~~rGiTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~-------~~~t~~~~~~~~~~~ip 136 (529)
T 2h5e_A 64 KQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGV-------EDRTRKLMEVTRLRDTP 136 (529)
T ss_dssp ------CCTTEEEEEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCS-------CHHHHHHHHHHTTTTCC
T ss_pred ccCCcceeeeEEEEEECCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccc-------hHHHHHHHHHHHHcCCC
Confidence 88999999999999999999999999999999999999999999999999999983 46888888888777877
Q ss_pred eEEEEEecCCCCCchHH-HHHHHHHHHHHh---------------------------h-hhcC-----------------
Q psy15197 313 QLGVVINKLDTVSWSQD-RFQEIVTKLGAF---------------------------L-KQAG----------------- 346 (902)
Q Consensus 313 ~iIVviNKiDl~~~~~~-~~~~i~~~l~~~---------------------------l-~~~~----------------- 346 (902)
+|+|+||+|+...+.. .++++.+.+... + ...+
T Consensus 137 -iivviNK~Dl~~~~~~~~~~~i~~~l~~~~~~~~~pi~sa~~~~Gv~dl~~~~~~~~~~~~g~~~~~~~~i~~~~~~~l 215 (529)
T 2h5e_A 137 -ILTFMNKLDRDIRDPMELLDEVENELKIGCAPITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDL 215 (529)
T ss_dssp -EEEEEECTTSCCSCHHHHHHHHHHHHCCEEEESEEEESCGGGCCEEEETTTTEEEECCTTCCSSCCCCCEECCSSCHHH
T ss_pred -EEEEEcCcCCccccHHHHHHHHHHHhCCCccceecceecccCcceeeehhhhhHhhhcccCCCcccccccCCCCCHHHH
Confidence 6799999999764331 122222221100 0 0000
Q ss_pred -------------------------------CCCCCceEecCCCccCCCCCCCCCCcccccccCcccHHHHHHhc-CCCC
Q psy15197 347 -------------------------------FRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNF-KTPS 394 (902)
Q Consensus 347 -------------------------------~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L~~l-~~p~ 394 (902)
.....+|++++||++|.||.. |++.|..+ ++|.
T Consensus 216 ~e~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~---------------LLd~i~~~~P~P~ 280 (529)
T 2h5e_A 216 DAAVGEDLAQQLRDELELVKGASNEFDKELFLAGEITPVFFGTALGNFGVDH---------------MLDGLVEWAPAPM 280 (529)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHSCCCCHHHHHTTSEEEEEECBTTTTBSHHH---------------HHHHHHHHSCSSC
T ss_pred HHhhCHHHHHHhhcccchhhhhhhhhhHHHHHhCceeEEEeeecccCCCHHH---------------HHHHHHHhCCCCC
Confidence 011235788888888888877 88877665 4443
Q ss_pred CC---------CCCCceEEEeeEEe---eCCCeEEEEEEEEeeEeeCCCEEEEccCCcEEEEEEEEE----ceEeeeeec
Q psy15197 395 RP---------LTKPLRMSVSDIYK---STGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYV----DEMSVSAAY 458 (902)
Q Consensus 395 ~~---------~~~pl~~~I~~i~~---v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~----~~~~v~~a~ 458 (902)
.. .+.||.+.|+++.. .+++|++++|||+||+|+.|+.|++.+.+...+|.+++. .+.++++|.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~vfKi~~~~d~~~~G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~ 360 (529)
T 2h5e_A 281 PRQTDTRTVEASEDKFTGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLRQVRTAKDVVISDALTFMAGDRSHVEEAY 360 (529)
T ss_dssp CEEBSSCEECTTCCSCEEEEEEECSSCCSSSSCCCEEEEEEESCEETTCEEEETTTTEEEECSCEECCCC-----CCEEC
T ss_pred cccccccccCCCCCCeEEEEEEEeeccCcCCCceEEEEEEecCeEcCCCEEEEeeCCCEEEeceeeEEeCCCceEcceEC
Confidence 21 14689999999864 467899999999999999999999999998899999985 478899999
Q ss_pred cCCeEEEeeeccccccceeeccccCCCC
Q psy15197 459 AGDNVSVTLLNYDQQNVSVGFLLSELSH 486 (902)
Q Consensus 459 aGdiv~I~l~~~~~~~i~kG~vL~~~~~ 486 (902)
|||+++|... +++++|++|++...
T Consensus 361 aGdiv~i~~l----~~~~~Gdtl~~~~~ 384 (529)
T 2h5e_A 361 PGDILGLHNH----GTIQIGDTFTQGEM 384 (529)
T ss_dssp TTCEEEECCS----SCCCTTCEEESSCC
T ss_pred CCCEEEEecc----CCCccCCEeecCCc
Confidence 9999999875 77899999998653
No 42
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.96 E-value=9.8e-29 Score=299.41 Aligned_cols=224 Identities=20% Similarity=0.231 Sum_probs=174.7
Q ss_pred ccCCeEEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCC
Q psy15197 233 LNRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVN 312 (902)
Q Consensus 233 ~~rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~ 312 (902)
+++|+|+......+.++++.++|||||||.+|...+..+++.+|++|+|+|++.+. ..++...+..+...++|
T Consensus 57 ~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~-------~~~~~~~~~~~~~~~~p 129 (693)
T 2xex_A 57 QDRGITITSAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGV-------EPQTETVWRQATTYGVP 129 (693)
T ss_dssp -------CCSEEEEEETTEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBS-------CHHHHHHHHHHHHTTCC
T ss_pred hhcCceEeeeeEEEEECCeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCC-------cHHHHHHHHHHHHcCCC
Confidence 78999999999999999999999999999999999999999999999999999883 36788888888888876
Q ss_pred eEEEEEecCCCCCchHHHHHHHHHHHHHhhhhc--------------------------------C--------------
Q psy15197 313 QLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQA--------------------------------G-------------- 346 (902)
Q Consensus 313 ~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~--------------------------------~-------------- 346 (902)
+|+|+||+|+...+. .++.+++...+... +
T Consensus 130 -~ilviNK~Dl~~~~~---~~~~~~l~~~l~~~~~~~~ipisa~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (693)
T 2xex_A 130 -RIVFVNKMDKLGANF---EYSVSTLHDRLQANAAPIQLPIGAEDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLD 205 (693)
T ss_dssp -EEEEEECTTSTTCCH---HHHHHHHHHHHCCCEEESEEEECCGGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHH
T ss_pred -EEEEEECCCccccch---HHHHHHHHHHhCCCceeEEeecccCCCcceeeeeecceeEEeccCCCceeEEecCCHHHHH
Confidence 569999999976432 22222222222100 0
Q ss_pred -------------------------------------------CCCCCceEecCCCccCCCCCCCCCCcccccccCcccH
Q psy15197 347 -------------------------------------------FRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCL 383 (902)
Q Consensus 347 -------------------------------------------~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~L 383 (902)
.....+|++++||++|.|+.. |
T Consensus 206 ~~e~~r~~l~e~l~e~dd~l~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~gSA~~~~Gv~~---------------L 270 (693)
T 2xex_A 206 RAEEARASLIEAVAETSDELMEKYLGDEEISVSELKEAIRQATTNVEFYPVLCGTAFKNKGVQL---------------M 270 (693)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBSHHH---------------H
T ss_pred HHHHHHHHHHHHHhhCCHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCeeeEEEeecccCcCHHH---------------H
Confidence 001225899999999999987 7
Q ss_pred HHHHHh-cCCCCC--------------------CCCCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCcEE
Q psy15197 384 LDVIDN-FKTPSR--------------------PLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVT 442 (902)
Q Consensus 384 le~L~~-l~~p~~--------------------~~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~ 442 (902)
++.|.. +|+|.. ..+.|+.+.|++++.+++.|+++++||++|+|+.|+.|++...+...
T Consensus 271 Ld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~VfK~~~d~~~g~~~~~RV~sG~l~~g~~v~~~~~~~~~ 350 (693)
T 2xex_A 271 LDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAFKVMTDPYVGKLTFFRVYSGTMTSGSYVKNSTKGKRE 350 (693)
T ss_dssp HHHHHHHSCCGGGSCCEEEEETTEEEEEEEECSCTTSCCEEEEEEEEEETTTEEEEEEEEEESEEETTEEEEETTTTEEE
T ss_pred HHHHHHHCCCchhcccccccCCCccccceeecCCCCCceEEEEEEeeecCCCceEEEEEEEeeeEecCCEEEecCCCceE
Confidence 777654 555532 24679999999999999999999999999999999999998888888
Q ss_pred EEEEEEE----ceEeeeeeccCCeEEEeeeccccccceeeccccCCCC
Q psy15197 443 TVKAVYV----DEMSVSAAYAGDNVSVTLLNYDQQNVSVGFLLSELSH 486 (902)
Q Consensus 443 ~V~sI~~----~~~~v~~a~aGdiv~I~l~~~~~~~i~kG~vL~~~~~ 486 (902)
+|.+|.. ...++++|.|||+++|.+. +++++|++|++..+
T Consensus 351 ~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl----~~~~~GdTl~~~~~ 394 (693)
T 2xex_A 351 RVGRLLQMHANSRQEIDTVYSGDIAAAVGL----KDTGTGDTLCGEKN 394 (693)
T ss_dssp EECCEEEECSSCEEECSEEETTCEEEEESC----SSCCTTCEEEETTC
T ss_pred EeceEEEEeCCCceEccccCcCCEEEEeCc----ccCccCCEEecCCC
Confidence 9988875 4688999999999999875 67889999987654
No 43
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.96 E-value=8.3e-28 Score=290.19 Aligned_cols=225 Identities=23% Similarity=0.265 Sum_probs=178.9
Q ss_pred ccCCeEEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCC
Q psy15197 233 LNRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVN 312 (902)
Q Consensus 233 ~~rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~ 312 (902)
+.+|+|+......+.++++.++|||||||.+|...+..+++.+|++++|+|++.+ ...++.+++..+...+++
T Consensus 56 ~~~giti~~~~~~~~~~~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g-------~~~qt~~~~~~~~~~~ip 128 (665)
T 2dy1_A 56 KLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAG-------VQVGTERAWTVAERLGLP 128 (665)
T ss_dssp HHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTC-------SCHHHHHHHHHHHHTTCC
T ss_pred HhcCCeEEecceEEeeCCEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcc-------cchhHHHHHHHHHHccCC
Confidence 6789999999999999999999999999999999999999999999999999988 446888898888888877
Q ss_pred eEEEEEecCCCCCchHH-HHHHHHHHHH----------------------------------------------------
Q psy15197 313 QLGVVINKLDTVSWSQD-RFQEIVTKLG---------------------------------------------------- 339 (902)
Q Consensus 313 ~iIVviNKiDl~~~~~~-~~~~i~~~l~---------------------------------------------------- 339 (902)
+|+|+||+|+. .... ..+++.+.+.
T Consensus 129 -~ilv~NKiD~~-~~~~~~~~~l~~~l~~~~~~~~Pi~~~~~~~g~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~r~ 206 (665)
T 2dy1_A 129 -RMVVVTKLDKG-GDYYALLEDLRSTLGPILPIDLPLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERERVQRFRQ 206 (665)
T ss_dssp -EEEEEECGGGC-CCHHHHHHHHHHHHCSEEECEEEEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHHHHHHHH
T ss_pred -EEEEecCCchh-hhHHHHHHHHHHHhCCcceEEeeecCCCcccchhhhhhhheeecCCCceeEecCCHHHHHHHHHHHH
Confidence 55899999986 3322 1222222111
Q ss_pred ---------------HhhhhcCC--------------CCCCceEecCCCccCCCCCCCCCCcccccccCcccHHHHHHh-
Q psy15197 340 ---------------AFLKQAGF--------------RDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDN- 389 (902)
Q Consensus 340 ---------------~~l~~~~~--------------~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L~~- 389 (902)
.+++...+ ....+|++++||++|.|+.. |++.|..
T Consensus 207 ~l~e~~~~~d~~l~e~~l~~~~l~~~~~~~~~~~~~~~~~~~pv~~~SA~~~~Gv~~---------------Ll~~i~~~ 271 (665)
T 2dy1_A 207 EVLEAIVETDEGLLEKYLEGEEVTGEALEKAFHEAVRRGLLYPVALASGEREIGVLP---------------LLELILEA 271 (665)
T ss_dssp HHHHHHHTTCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBSHHH---------------HHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCeeEEEEeecccCcCHHH---------------HHHHHHHh
Confidence 01110000 01226899999999999998 7777755
Q ss_pred cCCCCCC-CCCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCcEEEEEEEEE----ceEeeeeeccCCeEE
Q psy15197 390 FKTPSRP-LTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYV----DEMSVSAAYAGDNVS 464 (902)
Q Consensus 390 l~~p~~~-~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~----~~~~v~~a~aGdiv~ 464 (902)
+++|... .+.|+.+.|++++.+++.|++++|||++|+|+.||.|++.+ ...+|.+|.. ...++++|.|||+++
T Consensus 272 lp~p~~~~~~~p~~~~V~k~~~d~~~G~~~~~rV~sG~l~~g~~v~~~~--~~~~v~~l~~~~g~~~~~v~~a~aG~iv~ 349 (665)
T 2dy1_A 272 LPSPTERFGDGPPLAKVFKVQVDPFMGQVAYLRLYRGRLKPGDSLQSEA--GQVRLPHLYVPMGKDLLEVEEAEAGFVLG 349 (665)
T ss_dssp SCCHHHHHCSCSCEEEEEEEEEETTTEEEEEEEEEESEECTTEEEBCTT--SCEEESSEEEEETTEEEEESCEETTCEEE
T ss_pred CCCccccCCCCCeEEEEEEEEEcCCCCeEEEEEEcccEEecCCEEEcCC--CeEEEeEEEEEeCCCeeECCEECCCCEEE
Confidence 5544332 57899999999999999999999999999999999999877 5578888775 467899999999999
Q ss_pred EeeeccccccceeeccccCCCCC
Q psy15197 465 VTLLNYDQQNVSVGFLLSELSHP 487 (902)
Q Consensus 465 I~l~~~~~~~i~kG~vL~~~~~~ 487 (902)
|.+. +++++|++|+...++
T Consensus 350 i~gl----~~~~~Gdtl~~~~~~ 368 (665)
T 2dy1_A 350 VPKA----EGLHRGMVLWQGEKP 368 (665)
T ss_dssp ESSC----TTCCTTCEEESSSCC
T ss_pred EeCC----ccCccCCEEecCCCc
Confidence 9865 578899999976553
No 44
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.94 E-value=2.3e-28 Score=286.20 Aligned_cols=207 Identities=22% Similarity=0.304 Sum_probs=161.8
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHH
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQD 329 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~ 329 (902)
+..++|||||||.+|...+..++..+|++|||+|++++.+ .|+.+++..+...++| +|||+||+|+.+.+..
T Consensus 51 g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~-------~qt~e~l~~~~~~~vP-iIVViNKiDl~~~~~~ 122 (537)
T 3izy_P 51 GEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVM-------KQTVESIQHAKDAHVP-IVLAINKCDKAEADPE 122 (537)
T ss_dssp SSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCC-------HHHHHHHHHHHTTTCC-EEECCBSGGGTTTSCC
T ss_pred CCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCcc-------HHHHHHHHHHHHcCCc-EEEEEecccccccchH
Confidence 4578999999999999999999999999999999999844 6999999999888887 7799999999753322
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCcccHHHHHHhc---CCCCCCCCCCceEEEe
Q psy15197 330 RFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNF---KTPSRPLTKPLRMSVS 406 (902)
Q Consensus 330 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L~~l---~~p~~~~~~pl~~~I~ 406 (902)
................ ...++++++||++|.|+.+ |++.|..+ +++....+.|+++.|.
T Consensus 123 ~v~~~l~~~~~~~e~~---~~~~~iv~vSAktG~GI~e---------------Lle~I~~l~~~~~~~~~~~~~~~~~V~ 184 (537)
T 3izy_P 123 KVKKELLAYDVVCEDY---GGDVQAVHVSALTGENMMA---------------LAEATIALAEMLELKADPTGAVEGTVI 184 (537)
T ss_dssp SSSSHHHHTTSCCCCS---SSSEEECCCCSSSSCSSHH---------------HHHHHHHHHTTCCCCCCSSSSEEEEEE
T ss_pred HHHHHHHhhhhhHHhc---CCCceEEEEECCCCCCchh---------------HHHHHHHhhhcccccCCCCCCcceeEE
Confidence 2111111111111111 1246899999999999998 66665432 3444556789999999
Q ss_pred eEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCcEEEEEEEEEce-EeeeeeccCCeEEEeeeccccccceeeccccCCC
Q psy15197 407 DIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYVDE-MSVSAAYAGDNVSVTLLNYDQQNVSVGFLLSELS 485 (902)
Q Consensus 407 ~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~~~-~~v~~a~aGdiv~I~l~~~~~~~i~kG~vL~~~~ 485 (902)
+++.+++.|+|++|+|.+|+|++||.+..+ ....+|++++.++ .++++|.||++|.|.+.. ....+|++|+...
T Consensus 185 e~~~~~g~G~V~~g~V~~G~l~~Gd~v~~g--~~~~kVr~i~~~~g~~v~~A~~G~~V~i~g~~---~~~~~Gd~l~~~~ 259 (537)
T 3izy_P 185 ESFTDKGRGPVTTAIIQRGTLRKGSILVAG--KSWAKVRLMFDENGRAVNEAYPSMPVGIIGWR---DLPSAGDEILEVE 259 (537)
T ss_dssp EECCCTTCCCCEEEEEEEECCSSEEEECCS--SCCEEEEEEEECCCCCSCCSCCSTTCCCCSSE---EEEEEESSCCSCC
T ss_pred EEEEeCCCceEEEEEEecCEEEcCCEEEeC--CceEEEEEEEcCCCCCCcEEcCCCEEEEECCC---CCCCCCCEEEecC
Confidence 999999999999999999999999988544 3457899999865 789999999999997752 3358999998876
Q ss_pred CC
Q psy15197 486 HP 487 (902)
Q Consensus 486 ~~ 487 (902)
+.
T Consensus 260 ~~ 261 (537)
T 3izy_P 260 SE 261 (537)
T ss_dssp SS
T ss_pred Ch
Confidence 54
No 45
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.93 E-value=9.1e-26 Score=278.68 Aligned_cols=241 Identities=24% Similarity=0.311 Sum_probs=165.9
Q ss_pred ccCCeEEeeeEEEEEEC----------------CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCc
Q psy15197 233 LNRGITMDVGQSQFETK----------------TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESG 296 (902)
Q Consensus 233 ~~rGiTid~~~~~~~~~----------------~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~ 296 (902)
+++|+|+......+.|. ++.++|||||||.+|...+..+++.+|++|+|+|++++. .
T Consensus 64 ~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~-------~ 136 (842)
T 1n0u_A 64 QERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGV-------C 136 (842)
T ss_dssp ---CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBS-------C
T ss_pred hhcceeEeeceeEEEecccccccccccccccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCC-------C
Confidence 77888888777777765 689999999999999999999999999999999999983 3
Q ss_pred hhhHHHHHHHHHhCCCeEEEEEecCCCCCc----h----HHHHHHHHHHHHHhhhhc-----C---CCCCCceEecCCCc
Q psy15197 297 GQTREHALLVRSLGVNQLGVVINKLDTVSW----S----QDRFQEIVTKLGAFLKQA-----G---FRDSDIEYVPCSGL 360 (902)
Q Consensus 297 ~qt~~~l~~l~~~~i~~iIVviNKiDl~~~----~----~~~~~~i~~~l~~~l~~~-----~---~~~~~~~ii~iSA~ 360 (902)
.++...+..+...++| +|+|+||+|+... + ...+..++++++..+..+ + +.+...++.++||+
T Consensus 137 ~qt~~~~~~~~~~~~p-~ilviNK~D~~~~e~~~~~~e~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~ 215 (842)
T 1n0u_A 137 VQTETVLRQALGERIK-PVVVINKVDRALLELQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGL 215 (842)
T ss_dssp HHHHHHHHHHHHTTCE-EEEEEECHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETT
T ss_pred HHHHHHHHHHHHcCCC-eEEEEECCCcchhhhccCHHHHHHHHHHHHHHHHHHHhhccccccCceeeceEEeeeEEeecc
Confidence 6888877777777876 5699999998621 1 223455556665555421 1 32223357778998
Q ss_pred cCCCCC---------CCCCC---------------------------cc-cc----------------------------
Q psy15197 361 TGENLT---------TPSQV---------------------------PA-LT---------------------------- 375 (902)
Q Consensus 361 ~G~gI~---------~~~~~---------------------------~~-~~---------------------------- 375 (902)
+|.++. +.+.. +. ..
T Consensus 216 ~g~~~~~~~f~~~y~~~~~~~~~~l~~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~f~~~~~~~~~~l~e~~~~~d~~~ 295 (842)
T 1n0u_A 216 HGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFNPKTKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDE 295 (842)
T ss_dssp TTEEEEHHHHHHHHHTTTTSCHHHHHHHTSSSCEEETTTTEEESCSBCTTCCBCCBHHHHHTHHHHHHHHHHHHTTCTTH
T ss_pred cccccchhhhhhhcchhcCCCHHHHHHHHhccccccCCCCeEEEecCCchhhhhhHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 875531 00000 00 00
Q ss_pred ------------------------------cccC-cccHHHHH-HhcCCCC-------------------------CCCC
Q psy15197 376 ------------------------------SWYS-GPCLLDVI-DNFKTPS-------------------------RPLT 398 (902)
Q Consensus 376 ------------------------------~w~~-g~~Lle~L-~~l~~p~-------------------------~~~~ 398 (902)
.|.. ...|++.+ +.+|+|. ...+
T Consensus 296 ~e~~l~~~g~~l~~~e~~~~~~~l~~~~~~~~~pv~~~LLd~i~~~lPsP~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 375 (842)
T 1n0u_A 296 IPVLLEKLEIVLKGDEKDLEGKALLKVVMRKFLPAADALLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPK 375 (842)
T ss_dssp HHHHHHHTTCCCCGGGGGCCHHHHHHHHHHHHSBHHHHHHHHHHHHSCCHHHHHHHHHHHHBSSCTTSHHHHHHHTTCTT
T ss_pred HHHHHHHcCCCCCHHHHhhhhHHHHHHHHhhccchHHHHHHHHHHhCCChhHhcccccccccCCcccccccceeeccCCC
Confidence 0000 02234433 3445442 2346
Q ss_pred CCceEEEeeEEeeCCCeE-EEEEEEEeeEeeCCCEEEEccC------Cc---EEEEEEEEE----ceEeeeeeccCCeEE
Q psy15197 399 KPLRMSVSDIYKSTGSGY-CIAGRVETGVILAGEKVMVQPQ------NE---VTTVKAVYV----DEMSVSAAYAGDNVS 464 (902)
Q Consensus 399 ~pl~~~I~~i~~v~g~G~-V~~GrV~sG~Lk~Gd~v~l~p~------~~---~~~V~sI~~----~~~~v~~a~aGdiv~ 464 (902)
.|+.+.|++++.+++.|+ ++++||+||+|+.|+.|.+... +. ..+|.+|.+ ...++++|.|||+++
T Consensus 376 ~p~~a~VfK~~~~~~~G~~l~~~RV~sG~l~~g~~v~v~~~~~n~~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~a 455 (842)
T 1n0u_A 376 ADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIG 455 (842)
T ss_dssp SSCEEEEEEEEEBSSTTCEEEEEEEEESEEETTCEEEEECTTCCSSSCTTEEEEECCEEEEEETTEEEEESEEETTCEEE
T ss_pred CCeEEEEEeeeecCCCCceEEEEEEEeeeecCCCEEEeccccccCCCCcccceEEeeeeEeeccCcccccceeCCCCEEE
Confidence 899999999999999995 9999999999999999976532 22 577888875 567899999999999
Q ss_pred Eeeeccccccc--eeeccccCCCC
Q psy15197 465 VTLLNYDQQNV--SVGFLLSELSH 486 (902)
Q Consensus 465 I~l~~~~~~~i--~kG~vL~~~~~ 486 (902)
|.+. +++ ..| +|++...
T Consensus 456 i~gl----~~~~~~t~-Tl~~~~~ 474 (842)
T 1n0u_A 456 LVGI----DQFLLKTG-TLTTSET 474 (842)
T ss_dssp EESC----TTTCCSSE-EEESCTT
T ss_pred EEcc----ccceecce-eecCCCC
Confidence 9886 444 345 7765443
No 46
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.93 E-value=6.3e-28 Score=280.24 Aligned_cols=216 Identities=26% Similarity=0.282 Sum_probs=163.8
Q ss_pred CCeEEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeE
Q psy15197 235 RGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQL 314 (902)
Q Consensus 235 rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~i 314 (902)
+|+|++.....+.++++.++|||||||.+|...+..++..+|++|||+|++++.+ .|+.+++..+...++| +
T Consensus 35 ~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~-------~qT~e~l~~~~~~~vP-i 106 (501)
T 1zo1_I 35 GGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVM-------PQTIEAIQHAKAAQVP-V 106 (501)
T ss_dssp CCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSC-------TTTHHHHHHHHHTTCC-E
T ss_pred CCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCcc-------HHHHHHHHHHHhcCce-E
Confidence 3444444444455566789999999999999999999999999999999999844 6999999988888987 7
Q ss_pred EEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCC----CCCceEecCCCccCCCCCCCCCCcccccccCcccHHHHHHh-
Q psy15197 315 GVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFR----DSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDN- 389 (902)
Q Consensus 315 IVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~----~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L~~- 389 (902)
|+++||+|+.+++.++. ...+...++. ...++++++||++|.|+.+ |++.|..
T Consensus 107 IVviNKiDl~~~~~~~v-------~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~e---------------Lle~I~~~ 164 (501)
T 1zo1_I 107 VVAVNKIDKPEADPDRV-------KNELSQYGILPEEWGGESQFVHVSAKAGTGIDE---------------LLDAILLQ 164 (501)
T ss_dssp EEEEECSSSSTTCCCCT-------TCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTT---------------HHHHTTTT
T ss_pred EEEEEeccccccCHHHH-------HHHHHHhhhhHHHhCCCccEEEEeeeeccCcch---------------hhhhhhhh
Confidence 79999999975432211 1111111111 1236899999999999998 7777643
Q ss_pred --cCCCCCCCCCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCcEEEEEEEEE-ceEeeeeeccCCeEEEe
Q psy15197 390 --FKTPSRPLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYV-DEMSVSAAYAGDNVSVT 466 (902)
Q Consensus 390 --l~~p~~~~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~-~~~~v~~a~aGdiv~I~ 466 (902)
++.+....+.|+.+.|.+++.+++.|++++|+|.+|+|++||.+.+++. ..+|+++.. +...+++|.||+.+.|.
T Consensus 165 ~~~~~~~~~~~~~~~~~V~e~~~d~g~G~v~~~~V~~Gtlk~Gd~v~~g~~--~~kVr~i~~~~g~~v~~a~~g~~V~i~ 242 (501)
T 1zo1_I 165 AEVLELKAVRKGMASGAVIESFLDKGRGPVATVLVREGTLHKGDIVLCGFE--YGRVRAMRNELGQEVLEAGPSIPVEIL 242 (501)
T ss_dssp CCCSTTTSCCCSBCEEEEEEEEECSSSSEEEEEEEEESBCCTTCEEEEEBS--SCEEEEECCTTTTSEEEECCSSCSSSE
T ss_pred hhhhccccccccccccceEEEEEeCCcEEEEEEEEEeeEEecCCEEEEccc--eeEEEEEEecCCCcCcEeccCCcEEEe
Confidence 2333344577899999999999999999999999999999999998763 458889875 45789999999998877
Q ss_pred eeccccccceeeccccCCC
Q psy15197 467 LLNYDQQNVSVGFLLSELS 485 (902)
Q Consensus 467 l~~~~~~~i~kG~vL~~~~ 485 (902)
+.. .....|++++...
T Consensus 243 gl~---~~~~~Gd~~~~~~ 258 (501)
T 1zo1_I 243 GLS---GVPAAGDEVTVVR 258 (501)
T ss_dssp EEC---SCCCTTEEEEEEC
T ss_pred CCC---CCCCCCCEEEecC
Confidence 542 2246788886543
No 47
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.93 E-value=2.1e-26 Score=273.47 Aligned_cols=209 Identities=24% Similarity=0.400 Sum_probs=157.7
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCC-chH-
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVS-WSQ- 328 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~-~~~- 328 (902)
..++|||||||.+|...+.++++.+|++|||+|+++| ...|+.+.+..+...++| +|+|+||+|+.. +..
T Consensus 70 ~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~G-------v~~qT~e~l~~l~~~~vP-iIVViNKiDl~~~~~~~ 141 (594)
T 1g7s_A 70 PGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEG-------FKPQTQEALNILRMYRTP-FVVAANKIDRIHGWRVH 141 (594)
T ss_dssp CEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTC-------CCHHHHHHHHHHHHTTCC-EEEEEECGGGSTTCCCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCC-------ccHhHHHHHHHHHHcCCe-EEEEecccccccccccc
Confidence 3699999999999998888888999999999999998 447999999999888877 679999999863 211
Q ss_pred -----------------HHHHHHHHHHHHhhhhcCCC----------CCCceEecCCCccCCCCCCCCCCcccccccCcc
Q psy15197 329 -----------------DRFQEIVTKLGAFLKQAGFR----------DSDIEYVPCSGLTGENLTTPSQVPALTSWYSGP 381 (902)
Q Consensus 329 -----------------~~~~~i~~~l~~~l~~~~~~----------~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~ 381 (902)
..+.+...++...+...++. ...+|++++||++|.|+.+
T Consensus 142 ~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~e-------------- 207 (594)
T 1g7s_A 142 EGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPE-------------- 207 (594)
T ss_dssp TTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHH--------------
T ss_pred cCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchh--------------
Confidence 12223333333334333332 2356999999999999998
Q ss_pred cHHHHHHhc----CCC--CCCCCCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCcE--EEEEEEEEc---
Q psy15197 382 CLLDVIDNF----KTP--SRPLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEV--TTVKAVYVD--- 450 (902)
Q Consensus 382 ~Lle~L~~l----~~p--~~~~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~--~~V~sI~~~--- 450 (902)
|++.|..+ .++ ....+.|+++.|++++.+++.|++++|+|++|+|++||.|.+++.+.. .+|++|...
T Consensus 208 -Ll~~I~~~~~~~~~~~l~~~~~~p~~~~V~~~~~d~g~G~v~~~rV~~G~Lk~Gd~v~~~~~~~~~~~rV~~i~~~~~~ 286 (594)
T 1g7s_A 208 -LLTMLMGLAQQYLREQLKIEEDSPARGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPL 286 (594)
T ss_dssp -HHHHHHHHHHHHCSGGGEECTTSBCEEEEEEEEEETTEEEEEEEEEEESEEETTCEEEEEBSSSEEEEECCEEEEECCC
T ss_pred -HHHHHHhhccccchhhhccccCCCceeEEEEEEEeCCcEEEEEEEEeeCEEeeCCEEEECCCCCceeEEEeEEEecccc
Confidence 66665432 211 123478999999999999999999999999999999999999988763 488888642
Q ss_pred ---------eEeeeeec--cCCeEEEeeeccccccceeeccccCCCC
Q psy15197 451 ---------EMSVSAAY--AGDNVSVTLLNYDQQNVSVGFLLSELSH 486 (902)
Q Consensus 451 ---------~~~v~~a~--aGdiv~I~l~~~~~~~i~kG~vL~~~~~ 486 (902)
..++++|. +|+++.+... +++..|++|+...+
T Consensus 287 ~elr~~~~~~~~v~ea~~~aG~~v~~~~l----~~~~~Gd~l~~~~~ 329 (594)
T 1g7s_A 287 EEMRESRKKFQKVDEVVAAAGIKIVAPGI----DDVMAGSPLRVVTD 329 (594)
T ss_dssp C----CCCSEEECSEEESSEEEEEECSSC----TTBCTTCEEEECSS
T ss_pred chhhhccCCceEccEEcCCCCcEEEEccc----CCCCCCCEEEecCC
Confidence 45677777 6776665433 56678888876543
No 48
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.77 E-value=1.5e-19 Score=198.88 Aligned_cols=200 Identities=24% Similarity=0.279 Sum_probs=123.4
Q ss_pred CCeEEeeeEEEEEEC-CeEEEEEeCCCccc----------hHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHH-
Q psy15197 235 RGITMDVGQSQFETK-TKYITLLDAPGHKD----------FIPNMITGATQADVALLVVDATRGEFETGFESGGQTREH- 302 (902)
Q Consensus 235 rGiTid~~~~~~~~~-~~~i~lIDTPG~~d----------f~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~- 302 (902)
.++|++.....+..+ +.+++||||||+.+ +...+..++..+|++|+|+|++++.. .++...
T Consensus 42 ~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~-------~~~~~~~ 114 (308)
T 3iev_A 42 AGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWR-------PRDEEIY 114 (308)
T ss_dssp SCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSC-------HHHHHHH
T ss_pred CCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCC-------chhHHHH
Confidence 345555555666777 89999999999954 55778888999999999999998732 355555
Q ss_pred HHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCccc
Q psy15197 303 ALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPC 382 (902)
Q Consensus 303 l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~ 382 (902)
+..+...++| +|+|+||+|+... .....+..+.+.. .++ ...+++++||++|.|+.+
T Consensus 115 ~~~l~~~~~p-vilV~NK~Dl~~~-~~~~~~~~~~l~~---~~~---~~~~i~~vSA~~g~gv~~--------------- 171 (308)
T 3iev_A 115 QNFIKPLNKP-VIVVINKIDKIGP-AKNVLPLIDEIHK---KHP---ELTEIVPISALKGANLDE--------------- 171 (308)
T ss_dssp HHHTGGGCCC-EEEEEECGGGSSS-GGGGHHHHHHHHH---HCT---TCCCEEECBTTTTBSHHH---------------
T ss_pred HHHHHhcCCC-EEEEEECccCCCC-HHHHHHHHHHHHH---hcc---CCCeEEEEeCCCCCCHHH---------------
Confidence 5555556665 7799999999721 2222333333332 222 123789999999999998
Q ss_pred HHHHHHhcCCCC-------CCCCCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCcEEEEEEEEEceEeee
Q psy15197 383 LLDVIDNFKTPS-------RPLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYVDEMSVS 455 (902)
Q Consensus 383 Lle~L~~l~~p~-------~~~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~~~~~v~ 455 (902)
|++.|....+.. ...+.+.++.+.++++ +++...-..+.++...+.+.....+
T Consensus 172 L~~~l~~~l~~~~~~~~~~~~td~~~~~~~~e~ir--------------------ek~~~~~~~eiP~~~~v~i~~~~~~ 231 (308)
T 3iev_A 172 LVKTILKYLPEGEPLFPEDMITDLPLRLLAAEIVR--------------------EKAMMLTREEVPTSIAVKINEIKPG 231 (308)
T ss_dssp HHHHHHHHSCBCCCSSCTTCCBCCCHHHHHHHHHH--------------------HHHHHTCCTTHHHHCEEEEEEEEEC
T ss_pred HHHHHHHhCccCCCCCCcccccCCCHHHHHHHHHH--------------------HHHHhhhhhhcCCeeEEEeEEEEEc
Confidence 777765544322 1224455555555443 1111111222222223333222111
Q ss_pred eeccCCeEEEeeeccccccceeeccccCCC
Q psy15197 456 AAYAGDNVSVTLLNYDQQNVSVGFLLSELS 485 (902)
Q Consensus 456 ~a~aGdiv~I~l~~~~~~~i~kG~vL~~~~ 485 (902)
.. ....+.|...++++++.++|++|++.+
T Consensus 232 ~~-~~~~~~i~a~i~ve~~~~k~i~ig~~g 260 (308)
T 3iev_A 232 DA-NPNMLVIKGEIIVDRENLKPIIIGKKG 260 (308)
T ss_dssp SS-CTTSEEEEEEEEESSGGGHHHHHCGGG
T ss_pred cC-CCCeEEEEEEEEEccCCcceEEEcCCc
Confidence 10 124567777888899999999999854
No 49
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.75 E-value=8e-18 Score=193.73 Aligned_cols=125 Identities=18% Similarity=0.272 Sum_probs=87.3
Q ss_pred ccCCeEEeeeEEEEEECCeEEEEEeCCCcc----------chHHH-HHHHHHHcCEEEEEEECCCCccccccCCchhhHH
Q psy15197 233 LNRGITMDVGQSQFETKTKYITLLDAPGHK----------DFIPN-MITGATQADVALLVVDATRGEFETGFESGGQTRE 301 (902)
Q Consensus 233 ~~rGiTid~~~~~~~~~~~~i~lIDTPG~~----------df~~~-~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~ 301 (902)
...|+|++.....+.+++..+.||||||+. .|... +..+++.+|++|+|+|++++.. .++..
T Consensus 205 ~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s-------~~~~~ 277 (436)
T 2hjg_A 205 NVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGII-------EQDKR 277 (436)
T ss_dssp ---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCC-------HHHHH
T ss_pred CCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCc-------HHHHH
Confidence 346788888888899999999999999984 34332 4568899999999999999844 46667
Q ss_pred HHHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCC
Q psy15197 302 HALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 369 (902)
Q Consensus 302 ~l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~ 369 (902)
++..+...+. ++|+|+||+|+.+.+....+++.+++...+..... +|++++||++|.|+.+++
T Consensus 278 ~~~~~~~~~~-~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~SA~tg~~v~~l~ 340 (436)
T 2hjg_A 278 IAGYAHEAGK-AVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDY----APILFMSALTKKRIHTLM 340 (436)
T ss_dssp HHHHHHHTTC-EEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTT----SCEEECCTTTCTTGGGHH
T ss_pred HHHHHHHcCC-cEEEEEECccCCCcchHHHHHHHHHHHHhcccCCC----CCEEEEecccCCCHHHHH
Confidence 7776776675 57799999999864443345555555555544332 489999999999999843
No 50
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.74 E-value=9.3e-19 Score=191.85 Aligned_cols=115 Identities=17% Similarity=0.180 Sum_probs=82.3
Q ss_pred EEEEECCeEEEEEeCCCccc--------hHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh--CCCe
Q psy15197 244 SQFETKTKYITLLDAPGHKD--------FIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL--GVNQ 313 (902)
Q Consensus 244 ~~~~~~~~~i~lIDTPG~~d--------f~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~--~i~~ 313 (902)
..+.+++.+++||||||+.+ |...+..+++.+|++|+|+|++++.. ..+...+..+... +.|
T Consensus 48 ~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~-------~~~~~i~~~l~~~~~~~p- 119 (301)
T 1wf3_A 48 GILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPT-------PEDELVARALKPLVGKVP- 119 (301)
T ss_dssp EEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCC-------HHHHHHHHHHGGGTTTSC-
T ss_pred EEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCC-------hHHHHHHHHHHhhcCCCC-
Confidence 34556789999999999987 67778888999999999999998732 3455555555555 555
Q ss_pred EEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCcccHHHHHHhcCC
Q psy15197 314 LGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNFKT 392 (902)
Q Consensus 314 iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L~~l~~ 392 (902)
+|+|+||+|+.+.... +.+.+..+ .++ .+++++||++|.|+++ |.+.|....+
T Consensus 120 ~ilV~NK~Dl~~~~~~----~~~~~~~~---~~~----~~~~~iSA~~g~gv~~---------------l~~~l~~~l~ 172 (301)
T 1wf3_A 120 ILLVGNKLDAAKYPEE----AMKAYHEL---LPE----AEPRMLSALDERQVAE---------------LKADLLALMP 172 (301)
T ss_dssp EEEEEECGGGCSSHHH----HHHHHHHT---STT----SEEEECCTTCHHHHHH---------------HHHHHHTTCC
T ss_pred EEEEEECcccCCchHH----HHHHHHHh---cCc----CcEEEEeCCCCCCHHH---------------HHHHHHHhcc
Confidence 7799999999753221 22222222 222 3789999999999998 7777766543
No 51
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.71 E-value=4.6e-17 Score=188.47 Aligned_cols=123 Identities=19% Similarity=0.287 Sum_probs=92.0
Q ss_pred cCCeEEeeeEEEEEECCeEEEEEeCCC----------ccchHHH-HHHHHHHcCEEEEEEECCCCccccccCCchhhHHH
Q psy15197 234 NRGITMDVGQSQFETKTKYITLLDAPG----------HKDFIPN-MITGATQADVALLVVDATRGEFETGFESGGQTREH 302 (902)
Q Consensus 234 ~rGiTid~~~~~~~~~~~~i~lIDTPG----------~~df~~~-~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~ 302 (902)
..|+|++.....+.+++..++|||||| +++|... +..++..+|++|+|+|++++.. .++..+
T Consensus 226 ~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~-------~~~~~~ 298 (456)
T 4dcu_A 226 VAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGII-------EQDKRI 298 (456)
T ss_dssp ------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCC-------HHHHHH
T ss_pred CCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcC-------HHHHHH
Confidence 456788877778888999999999999 4555544 4568899999999999998844 577888
Q ss_pred HHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCC
Q psy15197 303 ALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 368 (902)
Q Consensus 303 l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~ 368 (902)
+..+...+.+ +|+|+||+|+.+.+....+++.+.+...+...++ ++++++||++|.|+.++
T Consensus 299 ~~~~~~~~~~-~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~SA~~g~gv~~l 359 (456)
T 4dcu_A 299 AGYAHEAGKA-VVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDY----APILFMSALTKKRIHTL 359 (456)
T ss_dssp HHHHHHTTCE-EEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTT----SCEEECCTTTCTTGGGH
T ss_pred HHHHHHcCCC-EEEEEEChhcCCCchHHHHHHHHHHHHhcccCCC----CCEEEEcCCCCcCHHHH
Confidence 8888877754 7799999999865444556666666666655443 48999999999999983
No 52
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.68 E-value=8.7e-18 Score=167.18 Aligned_cols=112 Identities=31% Similarity=0.389 Sum_probs=76.1
Q ss_pred EEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCC
Q psy15197 245 QFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTV 324 (902)
Q Consensus 245 ~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~ 324 (902)
.+.+++..+.||||||+.+|...+...+..+|++|+|+|++.+.. .+..+.+..+...++| +++|+||+|+.
T Consensus 49 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~-------~~~~~~l~~~~~~~~p-~ilv~nK~Dl~ 120 (178)
T 2lkc_A 49 QVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVM-------PQTVEAINHAKAANVP-IIVAINKMDKP 120 (178)
T ss_dssp EEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCC-------HHHHHHHHHHGGGSCC-EEEEEETTTSS
T ss_pred EEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCc-------HHHHHHHHHHHhCCCC-EEEEEECccCC
Confidence 355667889999999999887777777788999999999988633 3555566555555665 77999999997
Q ss_pred CchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 325 SWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 325 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+.+.+......++...+.+..+ ..++++++||++|.|+.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~gv~~ 160 (178)
T 2lkc_A 121 EANPDRVMQELMEYNLVPEEWG---GDTIFCKLSAKTKEGLDH 160 (178)
T ss_dssp CSCHHHHHHHHTTTTCCBTTTT---SSEEEEECCSSSSHHHHH
T ss_pred cCCHHHHHHHHHhcCcChhHcC---CcccEEEEecCCCCCHHH
Confidence 6332222211111111111111 125899999999999998
No 53
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.66 E-value=1.9e-16 Score=164.02 Aligned_cols=109 Identities=16% Similarity=0.145 Sum_probs=72.7
Q ss_pred ECCeEEEEEeCCCccc----------hHHHHHHHHHH---cCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeE
Q psy15197 248 TKTKYITLLDAPGHKD----------FIPNMITGATQ---ADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQL 314 (902)
Q Consensus 248 ~~~~~i~lIDTPG~~d----------f~~~~~~~l~~---aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~i 314 (902)
.++..+.||||||+.+ +...+...+.. +|++|+|+|++++.. ......+..+...++| +
T Consensus 76 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~-------~~~~~~~~~l~~~~~p-~ 147 (223)
T 4dhe_A 76 AAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLT-------ELDRRMIEWFAPTGKP-I 147 (223)
T ss_dssp TTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC-------HHHHHHHHHHGGGCCC-E
T ss_pred CCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCC-------HHHHHHHHHHHhcCCC-E
Confidence 3467899999999632 34444455555 888999999998632 3555566666666665 7
Q ss_pred EEEEecCCCCCchHHHHHHHHHHHHHhhhhc---CCCCCCceEecCCCccCCCCCC
Q psy15197 315 GVVINKLDTVSWSQDRFQEIVTKLGAFLKQA---GFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 315 IVviNKiDl~~~~~~~~~~i~~~l~~~l~~~---~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
|+|+||+|+.+ ........+.+...+... +. ....+++++||++|.|+.+
T Consensus 148 i~v~nK~Dl~~--~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~SA~~g~gv~~ 200 (223)
T 4dhe_A 148 HSLLTKCDKLT--RQESINALRATQKSLDAYRDAGY-AGKLTVQLFSALKRTGLDD 200 (223)
T ss_dssp EEEEECGGGSC--HHHHHHHHHHHHHHHHHHHHHTC-CSCEEEEEEBTTTTBSHHH
T ss_pred EEEEeccccCC--hhhHHHHHHHHHHHHHhhhhccc-CCCCeEEEeecCCCcCHHH
Confidence 79999999975 222333333333333332 00 1235899999999999998
No 54
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.66 E-value=8.6e-16 Score=176.94 Aligned_cols=123 Identities=24% Similarity=0.248 Sum_probs=81.1
Q ss_pred ccCCeEEeeeEEEEEECCeEEEEEeCCCccchHH------------HHHHHHHHcCEEEEEEECCCCccccccCCchhhH
Q psy15197 233 LNRGITMDVGQSQFETKTKYITLLDAPGHKDFIP------------NMITGATQADVALLVVDATRGEFETGFESGGQTR 300 (902)
Q Consensus 233 ~~rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~------------~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~ 300 (902)
...|+|++.....+.+++..+.+|||||++++.. .+..++..+|++++|+|++.+.. .+..
T Consensus 210 ~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~-------~~~~ 282 (439)
T 1mky_A 210 PIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGIT-------RQDQ 282 (439)
T ss_dssp CCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCC-------HHHH
T ss_pred CCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCC-------HHHH
Confidence 3467888888888899999999999999865332 23567889999999999998743 3455
Q ss_pred HHHHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 301 EHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 301 ~~l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.....+...+. ++|+|+||+|+.+.+....+++.+.+...+....+ .+++++||++|.|+.+
T Consensus 283 ~i~~~l~~~~~-~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~SA~~g~gv~~ 344 (439)
T 1mky_A 283 RMAGLMERRGR-ASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDY----SPLIFTSADKGWNIDR 344 (439)
T ss_dssp HHHHHHHHTTC-EEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTT----SCEEECBTTTTBSHHH
T ss_pred HHHHHHHHcCC-CEEEEEECccCCCchhhHHHHHHHHHHHHhccCCC----CcEEEEECCCCCCHHH
Confidence 55566666675 47799999999753322234444444443433333 4899999999999998
No 55
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.66 E-value=5.8e-16 Score=151.13 Aligned_cols=111 Identities=24% Similarity=0.277 Sum_probs=78.0
Q ss_pred CeEEeeeEEEEEECCeEEEEEeCCCccc-------hHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHH
Q psy15197 236 GITMDVGQSQFETKTKYITLLDAPGHKD-------FIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRS 308 (902)
Q Consensus 236 GiTid~~~~~~~~~~~~i~lIDTPG~~d-------f~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~ 308 (902)
++|.+.....+..++..+.||||||+.+ +...+...+..+|++|+|+|++.+.. .........+..
T Consensus 34 ~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-------~~~~~~~~~~~~ 106 (161)
T 2dyk_A 34 GVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELT-------QADYEVAEYLRR 106 (161)
T ss_dssp ----CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCC-------HHHHHHHHHHHH
T ss_pred CceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCccc-------HhHHHHHHHHHh
Confidence 4455556666777888999999999987 55666777889999999999998632 234445556666
Q ss_pred hCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 309 LGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 309 ~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.+.| +++|+||+|+.+.. +++..+. ..++ .+++++||++|.|+.+
T Consensus 107 ~~~p-~ilv~nK~Dl~~~~--------~~~~~~~-~~~~----~~~~~~Sa~~~~gv~~ 151 (161)
T 2dyk_A 107 KGKP-VILVATKVDDPKHE--------LYLGPLY-GLGF----GDPIPTSSEHARGLEE 151 (161)
T ss_dssp HTCC-EEEEEECCCSGGGG--------GGCGGGG-GGSS----CSCEECBTTTTBSHHH
T ss_pred cCCC-EEEEEECcccccch--------HhHHHHH-hCCC----CCeEEEecccCCChHH
Confidence 6765 77999999997521 1122222 3333 2689999999999998
No 56
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.66 E-value=6.5e-16 Score=156.22 Aligned_cols=109 Identities=18% Similarity=0.173 Sum_probs=72.9
Q ss_pred EEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHH----hCCCeEEEEEecC
Q psy15197 246 FETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRS----LGVNQLGVVINKL 321 (902)
Q Consensus 246 ~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~----~~i~~iIVviNKi 321 (902)
+...+..+.||||||+.+|...+...+..+|++|+|+|+++... + ......+..+.. .++ ++|+|+||+
T Consensus 62 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s---~---~~~~~~~~~~~~~~~~~~~-piilv~NK~ 134 (188)
T 1zd9_A 62 ITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEK---I---EASKNELHNLLDKPQLQGI-PVLVLGNKR 134 (188)
T ss_dssp EEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGG---H---HHHHHHHHHHHTCGGGTTC-CEEEEEECT
T ss_pred EEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHH---H---HHHHHHHHHHHhCcccCCC-CEEEEEECC
Confidence 55678899999999999998888899999999999999987521 1 112222222221 244 477999999
Q ss_pred CCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 322 DTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 322 Dl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
|+.+... ..++.+.+. ........++++++||++|.|+.+
T Consensus 135 Dl~~~~~--~~~~~~~~~----~~~~~~~~~~~~~~SA~~g~gv~~ 174 (188)
T 1zd9_A 135 DLPGALD--EKELIEKMN----LSAIQDREICCYSISCKEKDNIDI 174 (188)
T ss_dssp TSTTCCC--HHHHHHHTT----GGGCCSSCEEEEECCTTTCTTHHH
T ss_pred CCccCCC--HHHHHHHhC----hhhhccCCeeEEEEECCCCCCHHH
Confidence 9975211 122222221 111112346899999999999998
No 57
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.66 E-value=1.6e-16 Score=184.30 Aligned_cols=116 Identities=20% Similarity=0.192 Sum_probs=65.8
Q ss_pred cCCeEEeeeEEEEEECCeEEEEEeCCCccchHHH--------HHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHH
Q psy15197 234 NRGITMDVGQSQFETKTKYITLLDAPGHKDFIPN--------MITGATQADVALLVVDATRGEFETGFESGGQTREHALL 305 (902)
Q Consensus 234 ~rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~~--------~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~ 305 (902)
..|+|++.....+.++++.++||||||++++... +...+..+|++|+|+|++.+... .+......+
T Consensus 264 ~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~------~~~~~~~~~ 337 (476)
T 3gee_A 264 MPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLD------DELTEIREL 337 (476)
T ss_dssp ---------CEEEEETTEEEEEEC--------------------CCCSSCSEEEEEEETTTCSSG------GGHHHHHHH
T ss_pred CCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcch------hhhHHHHHH
Confidence 4678888888888999999999999999875432 33456789999999999987431 112233344
Q ss_pred HHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 306 VRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 306 l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+......++|+|+||+|+.+...... +++... ++ .+++++||++|.||++
T Consensus 338 l~~l~~~piIvV~NK~Dl~~~~~~~~----~~l~~~----~~----~~~i~vSAktg~GI~e 387 (476)
T 3gee_A 338 KAAHPAAKFLTVANKLDRAANADALI----RAIADG----TG----TEVIGISALNGDGIDT 387 (476)
T ss_dssp HHHCTTSEEEEEEECTTSCTTTHHHH----HHHHHH----HT----SCEEECBTTTTBSHHH
T ss_pred HHhcCCCCEEEEEECcCCCCccchhH----HHHHhc----CC----CceEEEEECCCCCHHH
Confidence 44444456889999999976332211 112111 11 2789999999999998
No 58
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.64 E-value=1.1e-15 Score=176.07 Aligned_cols=116 Identities=28% Similarity=0.300 Sum_probs=80.6
Q ss_pred ccCCeEEeeeEEEEEECCeEEEEEeCCCccc---------hHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHH
Q psy15197 233 LNRGITMDVGQSQFETKTKYITLLDAPGHKD---------FIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHA 303 (902)
Q Consensus 233 ~~rGiTid~~~~~~~~~~~~i~lIDTPG~~d---------f~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l 303 (902)
...|+|+|.....+++++..+.||||||+.. +...+..+++.||++|+|+|++.+.+ .......
T Consensus 31 ~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~-------~~d~~i~ 103 (439)
T 1mky_A 31 DEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGIT-------KEDESLA 103 (439)
T ss_dssp -------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCC-------HHHHHHH
T ss_pred CCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCC-------HHHHHHH
Confidence 3468899999999999999999999999764 45667888999999999999998743 3445555
Q ss_pred HHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 304 LLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 304 ~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.++...+.| +|+|+||+|+.. . ...+.. ..+. .+++. +++++||++|.|+.+
T Consensus 104 ~~l~~~~~p-~ilv~NK~D~~~--~-~~~~~~---~~~~-~lg~~----~~~~iSA~~g~gv~~ 155 (439)
T 1mky_A 104 DFLRKSTVD-TILVANKAENLR--E-FEREVK---PELY-SLGFG----EPIPVSAEHNINLDT 155 (439)
T ss_dssp HHHHHHTCC-EEEEEESCCSHH--H-HHHHTH---HHHG-GGSSC----SCEECBTTTTBSHHH
T ss_pred HHHHHcCCC-EEEEEeCCCCcc--c-cHHHHH---HHHH-hcCCC----CEEEEeccCCCCHHH
Confidence 666666766 679999999852 1 011110 1222 34442 578999999999998
No 59
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.64 E-value=8.4e-16 Score=155.37 Aligned_cols=101 Identities=15% Similarity=0.197 Sum_probs=69.9
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHHH
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDR 330 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~ 330 (902)
..+.||||||+.++...+...+..+|++|+|+|++++... ......+..+......++|+|+||+|+.. ....
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~------~~~~~~~~~i~~~~~~piilv~NK~D~~~-~~~~ 165 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTL------DRAKTWVNQLKISSNYIIILVANKIDKNK-FQVD 165 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHH------HHHHHHHHHHHHHSCCEEEEEEECTTCC--CCSC
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHH------HHHHHHHHHHHhhCCCcEEEEEECCCccc-ccCC
Confidence 7899999999999988899999999999999999876221 11222333333322266889999999422 1111
Q ss_pred HHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 331 FQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 331 ~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
. +++..+++..+ ++++++||++|.|+.+
T Consensus 166 ~----~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 193 (208)
T 3clv_A 166 I----LEVQKYAQDNN-----LLFIQTSAKTGTNIKN 193 (208)
T ss_dssp H----HHHHHHHHHTT-----CEEEEECTTTCTTHHH
T ss_pred H----HHHHHHHHHcC-----CcEEEEecCCCCCHHH
Confidence 1 22333344444 3899999999999998
No 60
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.64 E-value=1.2e-15 Score=154.82 Aligned_cols=105 Identities=15% Similarity=0.154 Sum_probs=72.6
Q ss_pred ECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhC--CCeEEEEEecCCCCC
Q psy15197 248 TKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLG--VNQLGVVINKLDTVS 325 (902)
Q Consensus 248 ~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~--i~~iIVviNKiDl~~ 325 (902)
.....+.||||||+.++...+...+..+|++|+|+|+++... + ......+..+.... ..++++|+||+|+.+
T Consensus 69 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s---~---~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~ 142 (192)
T 2fg5_A 69 NELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDS---F---YTLKKWVKELKEHGPENIVMAIAGNKCDLSD 142 (192)
T ss_dssp SSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHH---H---HHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred CEEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHH---H---HHHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 345689999999999998888899999999999999987621 0 11223333344432 346789999999864
Q ss_pred chHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 326 WSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 326 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
...... +++..+.+..+ ++++++||++|.|+.+
T Consensus 143 ~~~v~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 175 (192)
T 2fg5_A 143 IREVPL----KDAKEYAESIG-----AIVVETSAKNAINIEE 175 (192)
T ss_dssp GCCSCH----HHHHHHHHTTT-----CEEEECBTTTTBSHHH
T ss_pred ccccCH----HHHHHHHHHcC-----CEEEEEeCCCCcCHHH
Confidence 211111 22333344444 3899999999999998
No 61
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.63 E-value=1.2e-15 Score=150.49 Aligned_cols=111 Identities=20% Similarity=0.229 Sum_probs=73.1
Q ss_pred EEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHH-HHHHH--hCCCeEEEEEecC
Q psy15197 245 QFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHA-LLVRS--LGVNQLGVVINKL 321 (902)
Q Consensus 245 ~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l-~~l~~--~~i~~iIVviNKi 321 (902)
.+.+++..+.||||||+.++...+...++.+|++|+|+|+++... | ......+ .++.. ....++++|+||+
T Consensus 45 ~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~piilv~nK~ 118 (171)
T 1upt_A 45 TVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDR---I---GISKSELVAMLEEEELRKAILVVFANKQ 118 (171)
T ss_dssp EEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTT---H---HHHHHHHHHHHTCGGGTTCEEEEEEECT
T ss_pred EEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHhchhhCCCEEEEEEECC
Confidence 455678899999999999988888888889999999999987621 1 1122222 22221 1234688999999
Q ss_pred CCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 322 DTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 322 Dl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
|+.+... ..++.+.+.. .......++++++||++|.|+.+
T Consensus 119 Dl~~~~~--~~~~~~~~~~----~~~~~~~~~~~~~Sa~~~~gi~~ 158 (171)
T 1upt_A 119 DMEQAMT--SSEMANSLGL----PALKDRKWQIFKTSATKGTGLDE 158 (171)
T ss_dssp TSTTCCC--HHHHHHHHTG----GGCTTSCEEEEECCTTTCTTHHH
T ss_pred CCcCCCC--HHHHHHHhCc----hhccCCceEEEECcCCCCcCHHH
Confidence 9975311 1222222211 11112345899999999999998
No 62
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.63 E-value=1.4e-16 Score=172.29 Aligned_cols=124 Identities=25% Similarity=0.346 Sum_probs=85.1
Q ss_pred cCCeEEeeeEEEEEECCeEEEEEeCCCccchHH---------H-HHHH--HHHcCEEEEEEECCCCccccccCCchhhHH
Q psy15197 234 NRGITMDVGQSQFETKTKYITLLDAPGHKDFIP---------N-MITG--ATQADVALLVVDATRGEFETGFESGGQTRE 301 (902)
Q Consensus 234 ~rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~---------~-~~~~--l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~ 301 (902)
..|+|++.....+.+.+..+.||||||+.++.. . +... ...+|++|+|+|++.. .....
T Consensus 33 ~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~---------~~~~~ 103 (274)
T 3i8s_A 33 WAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNL---------ERNLY 103 (274)
T ss_dssp CTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGH---------HHHHH
T ss_pred CCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCCh---------HHHHH
Confidence 357788888888888889999999999987541 1 1222 2589999999999863 23444
Q ss_pred HHHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCcc
Q psy15197 302 HALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGP 381 (902)
Q Consensus 302 ~l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~ 381 (902)
....+...++| +|+|+||+|+.+... ... .+..+.+.+++ |++++||++|.|+.+
T Consensus 104 ~~~~l~~~~~p-~ivv~NK~Dl~~~~~--~~~---~~~~l~~~lg~-----~~i~~SA~~g~gi~e-------------- 158 (274)
T 3i8s_A 104 LTLQLLELGIP-CIVALNMLDIAEKQN--IRI---EIDALSARLGC-----PVIPLVSTRGRGIEA-------------- 158 (274)
T ss_dssp HHHHHHHHTCC-EEEEEECHHHHHHTT--EEE---CHHHHHHHHTS-----CEEECCCGGGHHHHH--------------
T ss_pred HHHHHHhcCCC-EEEEEECccchhhhh--HHH---HHHHHHHhcCC-----CEEEEEcCCCCCHHH--------------
Confidence 55566677876 679999999853110 000 01112223343 899999999999998
Q ss_pred cHHHHHHhcCC
Q psy15197 382 CLLDVIDNFKT 392 (902)
Q Consensus 382 ~Lle~L~~l~~ 392 (902)
|.+.|....+
T Consensus 159 -l~~~i~~~~~ 168 (274)
T 3i8s_A 159 -LKLAIDRYKA 168 (274)
T ss_dssp -HHHHHHTCCC
T ss_pred -HHHHHHHHHh
Confidence 7787776544
No 63
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.63 E-value=9.3e-16 Score=157.35 Aligned_cols=108 Identities=20% Similarity=0.184 Sum_probs=71.9
Q ss_pred EEEEECC--eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh--CCCeEEEEEe
Q psy15197 244 SQFETKT--KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL--GVNQLGVVIN 319 (902)
Q Consensus 244 ~~~~~~~--~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~--~i~~iIVviN 319 (902)
..+.+++ ..+.||||||+.++...+...+..+|++|+|+|+++... + ......+..+... ...++|+|+|
T Consensus 60 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~piilv~n 133 (213)
T 3cph_A 60 KTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERT---F---TNIKQWFKTVNEHANDEAQLLLVGN 133 (213)
T ss_dssp EEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHTTTCSEEEEEEE
T ss_pred EEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCCEEEEEE
Confidence 3445555 579999999999988888889999999999999987521 1 1122333333332 1245789999
Q ss_pred cCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 320 KLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 320 KiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
|+|+..... ..+ +...+.+..++ +++++||++|.||.+
T Consensus 134 K~Dl~~~~~-~~~----~~~~~~~~~~~-----~~~~~Sa~~~~gi~~ 171 (213)
T 3cph_A 134 KSDMETRVV-TAD----QGEALAKELGI-----PFIESSAKNDDNVNE 171 (213)
T ss_dssp CTTCSSCCS-CHH----HHHHHHHHHTC-----CEEECBTTTTBSSHH
T ss_pred CCCCccccc-CHH----HHHHHHHHcCC-----EEEEEeCCCCCCHHH
Confidence 999853111 111 12222333343 789999999999998
No 64
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.63 E-value=1.6e-15 Score=148.64 Aligned_cols=110 Identities=24% Similarity=0.222 Sum_probs=72.2
Q ss_pred EEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHH---hCCCeEEEEEecCC
Q psy15197 246 FETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRS---LGVNQLGVVINKLD 322 (902)
Q Consensus 246 ~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~---~~i~~iIVviNKiD 322 (902)
+..++..+.||||||+.++...+...+..+|++|+|+|+++... | ......+..+.. ....++++|+||+|
T Consensus 39 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~piilv~nK~D 112 (164)
T 1r8s_A 39 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER---V---NEAREELMRMLAEDELRDAVLLVFANKQD 112 (164)
T ss_dssp EECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGG---H---HHHHHHHHHHHTCGGGTTCEEEEEEECTT
T ss_pred EEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHhchhhcCCeEEEEEECcC
Confidence 44467889999999999999888889999999999999987521 1 111222222221 12346889999999
Q ss_pred CCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 323 TVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 323 l~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+.+.. ...++.+.+. ........++++++||++|.|+.+
T Consensus 113 l~~~~--~~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~gi~~ 151 (164)
T 1r8s_A 113 LPNAM--NAAEITDKLG----LHSLRHRNWYIQATCATSGDGLYE 151 (164)
T ss_dssp STTCC--CHHHHHHHTT----GGGCSSCCEEEEECBTTTTBTHHH
T ss_pred CcCCC--CHHHHHHHhC----cccccCccEEEEEcccCCCcCHHH
Confidence 97521 1122222221 111112345899999999999998
No 65
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.63 E-value=5.2e-16 Score=156.45 Aligned_cols=110 Identities=25% Similarity=0.272 Sum_probs=69.4
Q ss_pred EEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh---CCCeEEEEEecCC
Q psy15197 246 FETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL---GVNQLGVVINKLD 322 (902)
Q Consensus 246 ~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~---~i~~iIVviNKiD 322 (902)
+.+++..+.||||||+.++...+...+..+|++|+|+|+++... | ......+..+... ...++|+|+||+|
T Consensus 55 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~piilv~NK~D 128 (187)
T 1zj6_A 55 IVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRER---I---SVTREELYKMLAHEDLRKAGLLIFANKQD 128 (187)
T ss_dssp EEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTT---H---HHHHHHHHHHHTSGGGTTCEEEEEEECTT
T ss_pred EEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHH---H---HHHHHHHHHHHhchhhCCCeEEEEEECCC
Confidence 44567899999999999988888888999999999999987621 1 1222222222221 2356889999999
Q ss_pred CCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 323 TVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 323 l~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+.+.. ..+++.+.+ ....+....++++++||++|.|+++
T Consensus 129 l~~~~--~~~~i~~~~----~~~~~~~~~~~~~~~Sa~~g~gi~~ 167 (187)
T 1zj6_A 129 VKECM--TVAEISQFL----KLTSIKDHQWHIQACCALTGEGLCQ 167 (187)
T ss_dssp STTCC--CHHHHHHHH----TGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred CcCCC--CHHHHHHHh----ChhhhcCCCcEEEEccCCCCcCHHH
Confidence 97521 122222222 1111122345899999999999998
No 66
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.63 E-value=2.3e-15 Score=149.92 Aligned_cols=103 Identities=17% Similarity=0.202 Sum_probs=71.0
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhC--CCeEEEEEecCCCCCch
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLG--VNQLGVVINKLDTVSWS 327 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~--i~~iIVviNKiDl~~~~ 327 (902)
...+.||||||+.++...+...++.+|++|+|+|+++... + ......+..+.... ..++++|+||+|+.+..
T Consensus 60 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~ 133 (181)
T 2efe_B 60 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQAS---F---ERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR 133 (181)
T ss_dssp EEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTC
T ss_pred EEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCcEEEEEECCcccccc
Confidence 3589999999999998888899999999999999987521 0 12233334444432 34578999999996422
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 328 QDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 328 ~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.... +++..+.+..++ +++++||++|.|+.+
T Consensus 134 ~~~~----~~~~~~~~~~~~-----~~~~~Sa~~g~gi~~ 164 (181)
T 2efe_B 134 KVTA----EDAQTYAQENGL-----FFMETSAKTATNVKE 164 (181)
T ss_dssp CSCH----HHHHHHHHHTTC-----EEEECCSSSCTTHHH
T ss_pred cCCH----HHHHHHHHHcCC-----EEEEEECCCCCCHHH
Confidence 1111 122233333443 899999999999998
No 67
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.63 E-value=4.7e-16 Score=154.58 Aligned_cols=102 Identities=22% Similarity=0.126 Sum_probs=69.9
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHH-----hCCCeEEEEEecCCCCC
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRS-----LGVNQLGVVINKLDTVS 325 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~-----~~i~~iIVviNKiDl~~ 325 (902)
..+.||||||+.++...+...+..+|++|+|+|+++... ++ .....+..+.. .+.+++++|+||+|+.+
T Consensus 56 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~ 129 (178)
T 2hxs_A 56 VTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQS---FE---NLEDWYTVVKKVSEESETQPLVALVGNKIDLEH 129 (178)
T ss_dssp EEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHH---HH---THHHHHHHHHHHHHHHTCCCEEEEEEECGGGGG
T ss_pred EEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhcccCCCCeEEEEEEcccccc
Confidence 689999999999988888889999999999999987521 11 11222232332 15566789999999864
Q ss_pred chHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 326 WSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 326 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
...... ++...+.+..++ +++++||++|.|+.+
T Consensus 130 ~~~~~~----~~~~~~~~~~~~-----~~~~~Sa~~~~gi~~ 162 (178)
T 2hxs_A 130 MRTIKP----EKHLRFCQENGF-----SSHFVSAKTGDSVFL 162 (178)
T ss_dssp GCSSCH----HHHHHHHHHHTC-----EEEEECTTTCTTHHH
T ss_pred ccccCH----HHHHHHHHHcCC-----cEEEEeCCCCCCHHH
Confidence 211111 112223333343 889999999999998
No 68
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.63 E-value=3.3e-16 Score=181.81 Aligned_cols=112 Identities=28% Similarity=0.318 Sum_probs=79.0
Q ss_pred cCCeEEeeeEEEEEECCeEEEEEeCCCcc-ch--------HHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHH
Q psy15197 234 NRGITMDVGQSQFETKTKYITLLDAPGHK-DF--------IPNMITGATQADVALLVVDATRGEFETGFESGGQTREHAL 304 (902)
Q Consensus 234 ~rGiTid~~~~~~~~~~~~i~lIDTPG~~-df--------~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~ 304 (902)
..|+|+|.....+.+++..+.||||||++ ++ +..+...+..+|++|+|+|++++.. .+..+.+.
T Consensus 274 ~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s-------~~~~~il~ 346 (482)
T 1xzp_A 274 IPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLD-------EEDRKILE 346 (482)
T ss_dssp SSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCC-------HHHHHHHH
T ss_pred CCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCC-------HHHHHHHH
Confidence 35667777777788889999999999998 53 3567788999999999999987632 23334433
Q ss_pred HHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 305 LVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 305 ~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.+ .+ .++|+|+||+|+.+.. ..++ +..++ +. ..+++++||++|.||++
T Consensus 347 ~l--~~-~piivV~NK~DL~~~~--~~~~----~~~~~---~~---~~~~i~iSAktg~Gi~e 394 (482)
T 1xzp_A 347 RI--KN-KRYLVVINKVDVVEKI--NEEE----IKNKL---GT---DRHMVKISALKGEGLEK 394 (482)
T ss_dssp HH--TT-SSEEEEEEECSSCCCC--CHHH----HHHHH---TC---STTEEEEEGGGTCCHHH
T ss_pred Hh--cC-CCEEEEEECccccccc--CHHH----HHHHh---cC---CCcEEEEECCCCCCHHH
Confidence 33 24 4577999999997521 1122 22222 11 24789999999999998
No 69
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.63 E-value=1.6e-15 Score=148.96 Aligned_cols=103 Identities=17% Similarity=0.192 Sum_probs=69.5
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhC--CCeEEEEEecCCCCCch
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLG--VNQLGVVINKLDTVSWS 327 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~--i~~iIVviNKiDl~~~~ 327 (902)
+..+.||||||+.++...+...+..+|++|+|+|+++... + ......+..+.... ..++++|+||+|+.+..
T Consensus 54 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~ 127 (170)
T 1r2q_A 54 TVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEES---F---ARAKNWVKELQRQASPNIVIALSGNKADLANKR 127 (170)
T ss_dssp EEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC
T ss_pred EEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCcEEEEEECccCcccc
Confidence 5689999999999998888899999999999999987521 0 11222333333331 23577888999986421
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 328 QDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 328 ~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
....+ +...+....+ ++++++||++|.|+.+
T Consensus 128 ~~~~~----~~~~~~~~~~-----~~~~~~Sa~~g~gi~~ 158 (170)
T 1r2q_A 128 AVDFQ----EAQSYADDNS-----LLFMETSAKTSMNVNE 158 (170)
T ss_dssp CSCHH----HHHHHHHHTT-----CEEEECCTTTCTTHHH
T ss_pred ccCHH----HHHHHHHHcC-----CeEEEEeCCCCCCHHH
Confidence 11111 1222333333 3899999999999998
No 70
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.63 E-value=3.2e-15 Score=150.59 Aligned_cols=104 Identities=17% Similarity=0.260 Sum_probs=72.6
Q ss_pred CeEEEEEeCCC----------ccchHHHHHHHHHHc---CEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEE
Q psy15197 250 TKYITLLDAPG----------HKDFIPNMITGATQA---DVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGV 316 (902)
Q Consensus 250 ~~~i~lIDTPG----------~~df~~~~~~~l~~a---D~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIV 316 (902)
+..+.|||||| ...+...+...++.+ |++++|+|++.+.. ......+..+...++| +|+
T Consensus 67 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~-------~~~~~~~~~~~~~~~p-~i~ 138 (195)
T 3pqc_A 67 NSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQ-------DSDLMMVEWMKSLNIP-FTI 138 (195)
T ss_dssp TTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC-------HHHHHHHHHHHHTTCC-EEE
T ss_pred CCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCC-------HHHHHHHHHHHHcCCC-EEE
Confidence 44688999999 334555555555554 99999999987632 3455566677777765 779
Q ss_pred EEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 317 VINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 317 viNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
|+||+|+.+. .......+++...+...+ .++++++||++|.|+.+
T Consensus 139 v~nK~Dl~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~gv~~ 183 (195)
T 3pqc_A 139 VLTKMDKVKM--SERAKKLEEHRKVFSKYG----EYTIIPTSSVTGEGISE 183 (195)
T ss_dssp EEECGGGSCG--GGHHHHHHHHHHHHHSSC----CSCEEECCTTTCTTHHH
T ss_pred EEEChhcCCh--HHHHHHHHHHHHHHhhcC----CCceEEEecCCCCCHHH
Confidence 9999999752 233444455555555433 24899999999999998
No 71
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.62 E-value=7.5e-16 Score=175.94 Aligned_cols=124 Identities=21% Similarity=0.276 Sum_probs=88.3
Q ss_pred ccCCeEEeeeEEEEEECCe-EEEEEeCCCccch-------HHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHH
Q psy15197 233 LNRGITMDVGQSQFETKTK-YITLLDAPGHKDF-------IPNMITGATQADVALLVVDATRGEFETGFESGGQTREHAL 304 (902)
Q Consensus 233 ~~rGiTid~~~~~~~~~~~-~i~lIDTPG~~df-------~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~ 304 (902)
..+|+|++.....+++.+. .++||||||+.+| ...+...+..+|++|+|+|+ + ...++...+.
T Consensus 64 ~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~--~-------~~~~~~~~l~ 134 (423)
T 3qq5_A 64 DYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDS--A-------PTPYEDDVVN 134 (423)
T ss_dssp ------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSS--S-------CCHHHHHHHH
T ss_pred CCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeC--C-------ChHHHHHHHH
Confidence 3467788888888888775 9999999999874 45577888899999999999 3 2256777888
Q ss_pred HHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCcccHH
Q psy15197 305 LVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLL 384 (902)
Q Consensus 305 ~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Ll 384 (902)
.+...++| +|+|+||+|+.+.... +. ...+.+..+ ++++++||++|.|+++ ++
T Consensus 135 ~l~~~~~p-iIvV~NK~Dl~~~~~~---~~---~~~l~~~~g-----~~v~~vSAktg~gI~e---------------L~ 187 (423)
T 3qq5_A 135 LFKEMEIP-FVVVVNKIDVLGEKAE---EL---KGLYESRYE-----AKVLLVSALQKKGFDD---------------IG 187 (423)
T ss_dssp HHHHTTCC-EEEECCCCTTTTCCCT---HH---HHHSSCCTT-----CCCCCCSSCCTTSTTT---------------HH
T ss_pred HHHhcCCC-EEEEEeCcCCCCccHH---HH---HHHHHHHcC-----CCEEEEECCCCCCHHH---------------HH
Confidence 88888866 6799999999763322 11 222222333 4889999999999999 77
Q ss_pred HHHHhcCC
Q psy15197 385 DVIDNFKT 392 (902)
Q Consensus 385 e~L~~l~~ 392 (902)
+.|.+..+
T Consensus 188 ~~L~~~l~ 195 (423)
T 3qq5_A 188 KTISEILP 195 (423)
T ss_dssp HHHHHHSC
T ss_pred HHHHHhhh
Confidence 77765543
No 72
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.62 E-value=4e-15 Score=150.49 Aligned_cols=103 Identities=15% Similarity=0.185 Sum_probs=71.1
Q ss_pred eEEEEEeCCC----------ccchHHHHHHHHHHc---CEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEE
Q psy15197 251 KYITLLDAPG----------HKDFIPNMITGATQA---DVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVV 317 (902)
Q Consensus 251 ~~i~lIDTPG----------~~df~~~~~~~l~~a---D~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVv 317 (902)
..+.|||||| ...+...+...+..+ |++++|+|++.+.. ......+..+...+.| +++|
T Consensus 69 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-------~~~~~~~~~~~~~~~p-~i~v 140 (195)
T 1svi_A 69 DELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPS-------NDDVQMYEFLKYYGIP-VIVI 140 (195)
T ss_dssp TTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC-------HHHHHHHHHHHHTTCC-EEEE
T ss_pred CcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCC-------HHHHHHHHHHHHcCCC-EEEE
Confidence 3699999999 455666666667766 99999999988632 3444455666666665 7799
Q ss_pred EecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 318 INKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 318 iNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+||+|+.+.. ......+++...+... ...+++++||++|.|+.+
T Consensus 141 ~nK~Dl~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~gv~~ 184 (195)
T 1svi_A 141 ATKADKIPKG--KWDKHAKVVRQTLNID----PEDELILFSSETKKGKDE 184 (195)
T ss_dssp EECGGGSCGG--GHHHHHHHHHHHHTCC----TTSEEEECCTTTCTTHHH
T ss_pred EECcccCChH--HHHHHHHHHHHHHccc----CCCceEEEEccCCCCHHH
Confidence 9999997632 2333334443333211 235899999999999998
No 73
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.62 E-value=3.2e-15 Score=150.41 Aligned_cols=111 Identities=22% Similarity=0.313 Sum_probs=72.8
Q ss_pred EEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHH-HHHH--hCCCeEEEEEecC
Q psy15197 245 QFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHAL-LVRS--LGVNQLGVVINKL 321 (902)
Q Consensus 245 ~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~-~l~~--~~i~~iIVviNKi 321 (902)
.+.+++..+.+|||||++++...+..++..+|++|+|+|+++... | ......+. ++.. ....++++|+||+
T Consensus 54 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~piilv~NK~ 127 (181)
T 1fzq_A 54 SVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKR---F---EETGQELTELLEEEKLSCVPVLIFANKQ 127 (181)
T ss_dssp EEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGG---H---HHHHHHHHHHTTCGGGTTCCEEEEEECT
T ss_pred EEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHH---H---HHHHHHHHHHHhChhhcCCCEEEEEECc
Confidence 345668899999999999999988999999999999999987521 1 01122222 2221 1224577999999
Q ss_pred CCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 322 DTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 322 Dl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
|+.+... .+++.+.+ .........++++++||++|.|+.+
T Consensus 128 Dl~~~~~--~~~~~~~~----~~~~~~~~~~~~~~~Sa~~g~gi~~ 167 (181)
T 1fzq_A 128 DLLTAAP--ASEIAEGL----NLHTIRDRVWQIQSCSALTGEGVQD 167 (181)
T ss_dssp TSTTCCC--HHHHHHHT----TGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred CcccCCC--HHHHHHHh----CchhccCCceEEEEccCCCCCCHHH
Confidence 9975221 12222221 1111112345899999999999998
No 74
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.62 E-value=6.8e-16 Score=153.40 Aligned_cols=116 Identities=18% Similarity=0.109 Sum_probs=75.9
Q ss_pred eEEeeeEEEEEECC--eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHH-hCCCe
Q psy15197 237 ITMDVGQSQFETKT--KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRS-LGVNQ 313 (902)
Q Consensus 237 iTid~~~~~~~~~~--~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~-~~i~~ 313 (902)
++.+.....+.+++ ..+.||||||+.++...+...+..+|++|+|+|++++.. + ......+..+.. ....+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~p 115 (181)
T 3tw8_B 42 IGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAES---F---VNVKRWLHEINQNCDDVC 115 (181)
T ss_dssp BSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHCTTSE
T ss_pred ceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhCCCCC
Confidence 34444455566666 689999999999988778888899999999999987522 0 111222222322 22356
Q ss_pred EEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 314 LGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 314 iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+|+|+||+|+.+....... +...+....++ +++++||++|.|+.+
T Consensus 116 ~ilv~nK~Dl~~~~~~~~~----~~~~~~~~~~~-----~~~~~Sa~~~~gi~~ 160 (181)
T 3tw8_B 116 RILVGNKNDDPERKVVETE----DAYKFAGQMGI-----QLFETSAKENVNVEE 160 (181)
T ss_dssp EEEEEECTTCGGGCCSCHH----HHHHHHHHHTC-----CEEECBTTTTBSHHH
T ss_pred EEEEEECCCCchhcccCHH----HHHHHHHHcCC-----eEEEEECCCCCCHHH
Confidence 7899999998642211111 12222333343 789999999999998
No 75
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.62 E-value=1.5e-15 Score=153.99 Aligned_cols=109 Identities=20% Similarity=0.223 Sum_probs=73.6
Q ss_pred EEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh-----------CCCe
Q psy15197 245 QFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL-----------GVNQ 313 (902)
Q Consensus 245 ~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~-----------~i~~ 313 (902)
.+...+..+.||||||+.+|...+...++.+|++|+|+|+++... | ......+..+... ++ +
T Consensus 57 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s---~---~~~~~~~~~~~~~~~~~~~~~~~~~~-p 129 (199)
T 4bas_A 57 TFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLR---L---CVVKSEIQAMLKHEDIRRELPGGGRV-P 129 (199)
T ss_dssp EEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGG---H---HHHHHHHHHHHTSHHHHSBCTTSCBC-C
T ss_pred EEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHH---H---HHHHHHHHHHHhChhhhhcccccCCC-C
Confidence 345778999999999999998888888899999999999997621 1 1122222222221 44 4
Q ss_pred EEEEEecCCCCCchHHHHHHHHHHHH--HhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 314 LGVVINKLDTVSWSQDRFQEIVTKLG--AFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 314 iIVviNKiDl~~~~~~~~~~i~~~l~--~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+|+|+||+|+.+.. ..+++.+.+. .+.+. ..++++++||++|.||.+
T Consensus 130 iilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~g~gv~~ 178 (199)
T 4bas_A 130 FLFFANKMDAAGAK--TAAELVEILDLTTLMGD-----HPFVIFASNGLKGTGVHE 178 (199)
T ss_dssp EEEEEECTTSTTCC--CHHHHHHHHTHHHHHTT-----SCEEEEECBTTTTBTHHH
T ss_pred EEEEEECcCCCCCC--CHHHHHHHhcchhhccC-----CeeEEEEeeCCCccCHHH
Confidence 77999999997531 1222222221 11122 235899999999999998
No 76
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.62 E-value=5.9e-16 Score=169.59 Aligned_cols=116 Identities=19% Similarity=0.232 Sum_probs=78.7
Q ss_pred EEEECCeEEEEEeCCCcc-ch--------HHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEE
Q psy15197 245 QFETKTKYITLLDAPGHK-DF--------IPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLG 315 (902)
Q Consensus 245 ~~~~~~~~i~lIDTPG~~-df--------~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iI 315 (902)
.+.+++.+++|+||||+. +. ...+..++..+|++++|+|++. .. .++...+..+...+.| +|
T Consensus 50 i~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~-------~~~~~i~~~l~~~~~P-~i 120 (301)
T 1ega_A 50 IHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WT-------PDDEMVLNKLREGKAP-VI 120 (301)
T ss_dssp EEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CC-------HHHHHHHHHHHSSSSC-EE
T ss_pred EEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CC-------HHHHHHHHHHHhcCCC-EE
Confidence 356778899999999998 32 2223455678999999999976 32 3556666655555655 66
Q ss_pred EEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCcccHHHHHHhcCC
Q psy15197 316 VVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNFKT 392 (902)
Q Consensus 316 VviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L~~l~~ 392 (902)
+++||+|+.. +...+.+. +..+.+..++ .+++++||++|.|+.+ |.+.|....+
T Consensus 121 lvlNK~D~~~-~~~~~~~~---l~~l~~~~~~----~~~i~iSA~~g~~v~~---------------l~~~i~~~l~ 174 (301)
T 1ega_A 121 LAVNKVDNVQ-EKADLLPH---LQFLASQMNF----LDIVPISAETGLNVDT---------------IAAIVRKHLP 174 (301)
T ss_dssp EEEESTTTCC-CHHHHHHH---HHHHHTTSCC----SEEEECCTTTTTTHHH---------------HHHHHHTTCC
T ss_pred EEEECcccCc-cHHHHHHH---HHHHHHhcCc----CceEEEECCCCCCHHH---------------HHHHHHHhCC
Confidence 9999999975 12223232 3333333443 2689999999999998 7787766543
No 77
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.62 E-value=2e-16 Score=169.29 Aligned_cols=122 Identities=17% Similarity=0.189 Sum_probs=84.5
Q ss_pred cCCeEEeeeEEEEEECCeEEEEEeCCCccchHH----------HHHHHH--HHcCEEEEEEECCCCccccccCCchhhHH
Q psy15197 234 NRGITMDVGQSQFETKTKYITLLDAPGHKDFIP----------NMITGA--TQADVALLVVDATRGEFETGFESGGQTRE 301 (902)
Q Consensus 234 ~rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~----------~~~~~l--~~aD~aIlVVDa~~g~~E~~~~~~~qt~~ 301 (902)
..|+|++.....+.+++..+.||||||+.++.. .+...+ ..+|++|+|+|++.. .....
T Consensus 31 ~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~---------~~~~~ 101 (256)
T 3iby_A 31 WPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHL---------ERHLY 101 (256)
T ss_dssp CTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGH---------HHHHH
T ss_pred CCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCc---------hhHHH
Confidence 356788888888999999999999999987643 233344 679999999999863 13334
Q ss_pred HHHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCcc
Q psy15197 302 HALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGP 381 (902)
Q Consensus 302 ~l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~ 381 (902)
....+...++| +|+|+||+|+..... .....+.+ .+.+++ |++++||++|.|+++
T Consensus 102 l~~~l~~~~~p-vilv~NK~Dl~~~~~--~~~~~~~l---~~~lg~-----~vi~~SA~~g~gi~e-------------- 156 (256)
T 3iby_A 102 LTSQLFELGKP-VVVALNMMDIAEHRG--ISIDTEKL---ESLLGC-----SVIPIQAHKNIGIPA-------------- 156 (256)
T ss_dssp HHHHHTTSCSC-EEEEEECHHHHHHTT--CEECHHHH---HHHHCS-----CEEECBGGGTBSHHH--------------
T ss_pred HHHHHHHcCCC-EEEEEEChhcCCcCC--cHHHHHHH---HHHcCC-----CEEEEECCCCCCHHH--------------
Confidence 44555556765 779999999753110 00011112 223343 899999999999998
Q ss_pred cHHHHHHhc
Q psy15197 382 CLLDVIDNF 390 (902)
Q Consensus 382 ~Lle~L~~l 390 (902)
|.+.|.+.
T Consensus 157 -l~~~i~~~ 164 (256)
T 3iby_A 157 -LQQSLLHC 164 (256)
T ss_dssp -HHHHHHTC
T ss_pred -HHHHHHhh
Confidence 77877766
No 78
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.62 E-value=1.4e-15 Score=149.52 Aligned_cols=103 Identities=16% Similarity=0.105 Sum_probs=70.4
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhC--CCeEEEEEecCCCCCch
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLG--VNQLGVVINKLDTVSWS 327 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~--i~~iIVviNKiDl~~~~ 327 (902)
...+.||||||+.++...+...+..+|++|+|+|+++.... ......+..+...+ ..++++|+||+|+.+..
T Consensus 54 ~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~------~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~ 127 (170)
T 1z0j_A 54 LHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETF------STLKNWVRELRQHGPPSIVVAIAGNKCDLTDVR 127 (170)
T ss_dssp EEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHH------HHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGC
T ss_pred EEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHH------HHHHHHHHHHHHhCCCCCcEEEEEECCcccccc
Confidence 46899999999999988888999999999999999875220 11223334444432 34577899999997421
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 328 QDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 328 ~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.... ++...+.+..+ ++++++||++|.|+.+
T Consensus 128 ~v~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 158 (170)
T 1z0j_A 128 EVME----RDAKDYADSIH-----AIFVETSAKNAININE 158 (170)
T ss_dssp CSCH----HHHHHHHHHTT-----CEEEECBTTTTBSHHH
T ss_pred ccCH----HHHHHHHHHcC-----CEEEEEeCCCCcCHHH
Confidence 1111 11222333333 3899999999999998
No 79
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.62 E-value=8.6e-16 Score=152.39 Aligned_cols=103 Identities=21% Similarity=0.222 Sum_probs=70.5
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh--CCCeEEEEEecCCCCCch
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL--GVNQLGVVINKLDTVSWS 327 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~--~i~~iIVviNKiDl~~~~ 327 (902)
...+.||||||+.++...+...+..+|++|+|+|+++.... ......+..+... ...++++|+||+|+.+..
T Consensus 63 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 136 (179)
T 1z0f_A 63 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTY------NHLSSWLTDARNLTNPNTVIILIGNKADLEAQR 136 (179)
T ss_dssp EEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHH------HTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGC
T ss_pred EEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHH------HHHHHHHHHHHHhcCCCCcEEEEEECccccccc
Confidence 35799999999999999999999999999999999876221 1122223333332 224578999999996421
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 328 QDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 328 ~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.... +++..+.+..++ +++++||++|.|+.+
T Consensus 137 ~~~~----~~~~~~~~~~~~-----~~~~~Sa~~~~gi~~ 167 (179)
T 1z0f_A 137 DVTY----EEAKQFAEENGL-----LFLEASAKTGENVED 167 (179)
T ss_dssp CSCH----HHHHHHHHHTTC-----EEEECCTTTCTTHHH
T ss_pred ccCH----HHHHHHHHHcCC-----EEEEEeCCCCCCHHH
Confidence 1111 122333444443 899999999999998
No 80
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.62 E-value=1.3e-15 Score=153.96 Aligned_cols=115 Identities=17% Similarity=0.164 Sum_probs=76.5
Q ss_pred EEeeeEEEEEECC--eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhC--CCe
Q psy15197 238 TMDVGQSQFETKT--KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLG--VNQ 313 (902)
Q Consensus 238 Tid~~~~~~~~~~--~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~--i~~ 313 (902)
+.+.....+.+++ ..+.||||||+.++...+...+..+|++|+|+|+++... + ......+..+.... ..+
T Consensus 50 ~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p 123 (196)
T 3tkl_A 50 GVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES---F---NNVKQWLQEIDRYASENVN 123 (196)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCE
T ss_pred cceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCC
Confidence 3444445555665 579999999999998889999999999999999987521 1 11222333333331 245
Q ss_pred EEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 314 LGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 314 iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+|+|+||+|+.+....... +...+.+..++ +++++||++|.|+.+
T Consensus 124 ~ilv~nK~Dl~~~~~~~~~----~~~~~~~~~~~-----~~~~~Sa~~g~gv~~ 168 (196)
T 3tkl_A 124 KLLVGNKCDLTTKKVVDYT----TAKEFADSLGI-----PFLETSAKNATNVEQ 168 (196)
T ss_dssp EEEEEECTTCTTTCCSCHH----HHHHHHHHTTC-----CEEEECTTTCTTHHH
T ss_pred EEEEEECcccccccccCHH----HHHHHHHHcCC-----cEEEEeCCCCCCHHH
Confidence 7799999998753211111 12223333343 799999999999998
No 81
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.62 E-value=1.3e-15 Score=149.63 Aligned_cols=105 Identities=21% Similarity=0.207 Sum_probs=69.0
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh--CCCeEEEEEecCCCCCch
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL--GVNQLGVVINKLDTVSWS 327 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~--~i~~iIVviNKiDl~~~~ 327 (902)
...+.||||||+.++...+...++.+|++|+|+|+++... + ......+..+... ...++++|+||+|+.+..
T Consensus 51 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 124 (170)
T 1ek0_A 51 TVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQS---F---IKARHWVKELHEQASKDIIIALVGNKIDXLQEG 124 (170)
T ss_dssp EEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSS
T ss_pred EEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHH---H---HHHHHHHHHHHHhcCCCCcEEEEEECCCccccc
Confidence 3579999999999998888999999999999999987521 0 1122223233322 234577999999986421
Q ss_pred H-HHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 328 Q-DRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 328 ~-~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
. ... ..++...+.+..++ +++++||++|.|+.+
T Consensus 125 ~~~~v--~~~~~~~~~~~~~~-----~~~~~Sa~~~~gi~~ 158 (170)
T 1ek0_A 125 GERKV--AREEGEKLAEEKGL-----LFFETSAKTGENVND 158 (170)
T ss_dssp CCCCS--CHHHHHHHHHHHTC-----EEEECCTTTCTTHHH
T ss_pred cccCC--CHHHHHHHHHHcCC-----EEEEEeCCCCCCHHH
Confidence 0 000 01112222333343 899999999999998
No 82
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.61 E-value=1.5e-15 Score=151.80 Aligned_cols=109 Identities=22% Similarity=0.214 Sum_probs=72.1
Q ss_pred CCeEEeeeEEEEEECCeEEEEEeCCCccch--------HHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHH
Q psy15197 235 RGITMDVGQSQFETKTKYITLLDAPGHKDF--------IPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLV 306 (902)
Q Consensus 235 rGiTid~~~~~~~~~~~~i~lIDTPG~~df--------~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l 306 (902)
.|+|++.....+.+++..+.+|||||+.++ +..+...++.+|++|+|+|+++.... .....+..+
T Consensus 36 ~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~-------~~~~~~~~~ 108 (172)
T 2gj8_A 36 AGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAV-------DPAEIWPEF 108 (172)
T ss_dssp TTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCC-------SHHHHCHHH
T ss_pred CCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCH-------HHHHHHHHH
Confidence 345555555667778888999999998752 22244567899999999999876321 222333333
Q ss_pred HHh---CCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 307 RSL---GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 307 ~~~---~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
... ++| +|+|+||+|+.+... ...+. ...+++++||++|.|+++
T Consensus 109 ~~~~~~~~p-~ilv~NK~Dl~~~~~-----------~~~~~-----~~~~~~~~SA~~g~gv~~ 155 (172)
T 2gj8_A 109 IARLPAKLP-ITVVRNKADITGETL-----------GMSEV-----NGHALIRLSARTGEGVDV 155 (172)
T ss_dssp HHHSCTTCC-EEEEEECHHHHCCCC-----------EEEEE-----TTEEEEECCTTTCTTHHH
T ss_pred HHhcccCCC-EEEEEECccCCcchh-----------hhhhc-----cCCceEEEeCCCCCCHHH
Confidence 332 344 779999999853110 01111 124899999999999998
No 83
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.61 E-value=2.2e-15 Score=149.44 Aligned_cols=112 Identities=21% Similarity=0.152 Sum_probs=72.7
Q ss_pred eeEEEEEECC--eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh--CCCeEEE
Q psy15197 241 VGQSQFETKT--KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL--GVNQLGV 316 (902)
Q Consensus 241 ~~~~~~~~~~--~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~--~i~~iIV 316 (902)
.....+.+++ ..+.||||||+.++...+...+..+|++|+|+|+++... + ......+..+... ...++++
T Consensus 51 ~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~piil 124 (179)
T 2y8e_A 51 FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNS---F---HQTSKWIDDVRTERGSDVIIML 124 (179)
T ss_dssp EEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHHTTSSEEEE
T ss_pred EEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCcEEE
Confidence 3333444555 579999999999998888899999999999999987521 1 1122222222222 2345779
Q ss_pred EEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 317 VINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 317 viNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
|+||+|+.+.......+ ...+.+..+ ++++++||++|.|+.+
T Consensus 125 v~nK~Dl~~~~~~~~~~----~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 166 (179)
T 2y8e_A 125 VGNKTDLSDKRQVSTEE----GERKAKELN-----VMFIETSAKAGYNVKQ 166 (179)
T ss_dssp EEECGGGGGGCCSCHHH----HHHHHHHHT-----CEEEEEBTTTTBSHHH
T ss_pred EEECCcccccCcCCHHH----HHHHHHHcC-----CeEEEEeCCCCCCHHH
Confidence 99999986421111111 122233333 3899999999999998
No 84
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.61 E-value=1e-15 Score=154.78 Aligned_cols=112 Identities=13% Similarity=0.138 Sum_probs=73.4
Q ss_pred EEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh-----CCCeEEEEE
Q psy15197 244 SQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL-----GVNQLGVVI 318 (902)
Q Consensus 244 ~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~-----~i~~iIVvi 318 (902)
..+.+++..+.||||||+.++...+...+..+|++|+|+|+++... + ......+..+... ...++|+|+
T Consensus 60 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~~~piilv~ 133 (190)
T 2h57_A 60 EKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLR---M---VVAKEELDTLLNHPDIKHRRIPILFFA 133 (190)
T ss_dssp EEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHH---H---HHHHHHHHHHHHSTTTTTSCCCEEEEE
T ss_pred EEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHH---H---HHHHHHHHHHHhChhhccCCCeEEEEE
Confidence 3455667899999999999988888888899999999999987521 0 1122223223222 224577999
Q ss_pred ecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 319 NKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 319 NKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
||+|+.+.. ..+++.+. +....+....++++++||++|.|+.+
T Consensus 134 nK~Dl~~~~--~~~~~~~~----~~~~~~~~~~~~~~~~Sa~~~~gi~~ 176 (190)
T 2h57_A 134 NKMDLRDAV--TSVKVSQL----LCLENIKDKPWHICASDAIKGEGLQE 176 (190)
T ss_dssp ECTTSTTCC--CHHHHHHH----HTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred eCcCcccCC--CHHHHHHH----hChhhccCCceEEEEccCCCCcCHHH
Confidence 999997521 12222222 21111112346899999999999998
No 85
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.61 E-value=6.6e-16 Score=165.46 Aligned_cols=113 Identities=23% Similarity=0.258 Sum_probs=77.2
Q ss_pred CCeEEeeeEEEEEECCeEEEEEeCCCccchHH------HHHHHH--HHcCEEEEEEECCCCccccccCCchhhHHHHHHH
Q psy15197 235 RGITMDVGQSQFETKTKYITLLDAPGHKDFIP------NMITGA--TQADVALLVVDATRGEFETGFESGGQTREHALLV 306 (902)
Q Consensus 235 rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~------~~~~~l--~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l 306 (902)
.|+|++.....+..++..+.||||||+.++.. .+...+ ..+|++|+|+|++... .....+..+
T Consensus 36 pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~---------~~~~~~~~l 106 (258)
T 3a1s_A 36 PGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPE---------QSLYLLLEI 106 (258)
T ss_dssp TTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCH---------HHHHHHHHH
T ss_pred CCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchh---------hHHHHHHHH
Confidence 46777877888888899999999999987532 123333 4799999999998751 233344455
Q ss_pred HHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 307 RSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 307 ~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
...++| +|+|+||+|+..... .. .....+.+.+++ |++++||++|.|+.+
T Consensus 107 ~~~~~p-vilv~NK~Dl~~~~~--i~---~~~~~l~~~lg~-----~vi~~SA~~g~gi~e 156 (258)
T 3a1s_A 107 LEMEKK-VILAMTAIDEAKKTG--MK---IDRYELQKHLGI-----PVVFTSSVTGEGLEE 156 (258)
T ss_dssp HTTTCC-EEEEEECHHHHHHTT--CC---BCHHHHHHHHCS-----CEEECCTTTCTTHHH
T ss_pred HhcCCC-EEEEEECcCCCCccc--hH---HHHHHHHHHcCC-----CEEEEEeeCCcCHHH
Confidence 556766 779999999753110 00 011222333444 899999999999998
No 86
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.61 E-value=3.4e-15 Score=151.81 Aligned_cols=111 Identities=20% Similarity=0.148 Sum_probs=68.7
Q ss_pred EEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh---CCCeEEEEEecC
Q psy15197 245 QFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL---GVNQLGVVINKL 321 (902)
Q Consensus 245 ~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~---~i~~iIVviNKi 321 (902)
.+.+++..+.||||||+.++...+...+..+|++|+|+|+++... | ......+..+... ...++|+|+||+
T Consensus 67 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s---~---~~~~~~l~~~~~~~~~~~~piilv~NK~ 140 (192)
T 2b6h_A 67 TVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER---V---QESADELQKMLQEDELRDAVLLVFANKQ 140 (192)
T ss_dssp EEEETTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGG---H---HHHHHHHHHHHTCGGGTTCEEEEEEECT
T ss_pred EEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHhcccccCCCeEEEEEECC
Confidence 455678899999999999988888888999999999999987621 1 1112222222211 234578999999
Q ss_pred CCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 322 DTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 322 Dl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
|+.+.. ..+++.+.+. ........++++++||++|.|+++
T Consensus 141 Dl~~~~--~~~~i~~~~~----~~~~~~~~~~~~~~SA~~g~gi~~ 180 (192)
T 2b6h_A 141 DMPNAM--PVSELTDKLG----LQHLRSRTWYVQATCATQGTGLYD 180 (192)
T ss_dssp TSTTCC--CHHHHHHHTT----GGGCSSCCEEEEECBTTTTBTHHH
T ss_pred CCCCCC--CHHHHHHHhC----cccccCCceEEEECcCCCcCCHHH
Confidence 997521 1222222221 111122346899999999999998
No 87
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.61 E-value=1.1e-15 Score=151.41 Aligned_cols=111 Identities=21% Similarity=0.261 Sum_probs=69.6
Q ss_pred eEEeeeEEEEEECCeEEEEEeCCCccchH------HHHHHHHH--HcCEEEEEEECCCCccccccCCchhhHHHHHHHHH
Q psy15197 237 ITMDVGQSQFETKTKYITLLDAPGHKDFI------PNMITGAT--QADVALLVVDATRGEFETGFESGGQTREHALLVRS 308 (902)
Q Consensus 237 iTid~~~~~~~~~~~~i~lIDTPG~~df~------~~~~~~l~--~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~ 308 (902)
+|++.....+.+++..+.+|||||+.+|. .....++. .+|++++|+|++.. ......+..+..
T Consensus 36 ~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~---------~~~~~~~~~~~~ 106 (165)
T 2wji_A 36 VTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL---------ERNLYLTLQLME 106 (165)
T ss_dssp -CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCH---------HHHHHHHHHHHH
T ss_pred cceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCch---------hHhHHHHHHHHh
Confidence 34444444566678899999999998763 22333443 79999999999753 122333444455
Q ss_pred hCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 309 LGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 309 ~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.++| +|+|+||+|+..... .. .+...+.+..++ +++++||++|.|+++
T Consensus 107 ~~~p-~ilv~nK~Dl~~~~~--~~---~~~~~~~~~~~~-----~~~~~SA~~~~~v~~ 154 (165)
T 2wji_A 107 MGAN-LLLALNKMDLAKSLG--IE---IDVDKLEKILGV-----KVVPLSAAKKMGIEE 154 (165)
T ss_dssp TTCC-EEEEEECHHHHHHTT--CC---CCHHHHHHHHTS-----CEEECBGGGTBSHHH
T ss_pred cCCC-EEEEEEchHhccccC--hh---hHHHHHHHHhCC-----CEEEEEcCCCCCHHH
Confidence 5655 779999999753110 00 011112223333 789999999999998
No 88
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.61 E-value=7.2e-16 Score=154.73 Aligned_cols=110 Identities=25% Similarity=0.290 Sum_probs=72.3
Q ss_pred EEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHH---hCCCeEEEEEecCC
Q psy15197 246 FETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRS---LGVNQLGVVINKLD 322 (902)
Q Consensus 246 ~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~---~~i~~iIVviNKiD 322 (902)
+.+++..+.||||||+.++...+...+..+|++|+|+|+++... | ......+..+.. ....++|+|+||+|
T Consensus 60 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s---~---~~~~~~~~~~~~~~~~~~~piilv~NK~D 133 (181)
T 2h17_A 60 IVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRER---I---SVTREELYKMLAHEDLRKAGLLIFANKQD 133 (181)
T ss_dssp EEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTT---H---HHHHHHHHHHHTCGGGTTCEEEEEEECTT
T ss_pred EEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHhChhhCCCeEEEEEECCC
Confidence 44567899999999999988888888899999999999987621 1 122222322222 13345889999999
Q ss_pred CCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 323 TVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 323 l~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+.+.. ..+++.+. +.........++++++||++|.|+.+
T Consensus 134 l~~~~--~~~~i~~~----~~~~~~~~~~~~~~~~Sa~~g~gi~~ 172 (181)
T 2h17_A 134 VKECM--TVAEISQF----LKLTSIKDHQWHIQACCALTGEGLCQ 172 (181)
T ss_dssp STTCC--CHHHHHHH----TTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred cccCC--CHHHHHHH----hCcccccCCceEEEEccCCCCcCHHH
Confidence 97521 11222222 11111122345899999999999998
No 89
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.60 E-value=1.7e-15 Score=152.26 Aligned_cols=111 Identities=19% Similarity=0.181 Sum_probs=73.0
Q ss_pred EEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh---CCCeEEEEEecC
Q psy15197 245 QFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL---GVNQLGVVINKL 321 (902)
Q Consensus 245 ~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~---~i~~iIVviNKi 321 (902)
.+.+++..+.||||||+.++...+...+..+|++|+|+|+++... + ......+..+... ...++|+|+||+
T Consensus 56 ~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~piilv~nK~ 129 (186)
T 1ksh_A 56 TLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQR---M---QDCQRELQSLLVEERLAGATLLIFANKQ 129 (186)
T ss_dssp EEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGG---H---HHHHHHHHHHHTCGGGTTCEEEEEEECT
T ss_pred EEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHH---H---HHHHHHHHHHHhChhcCCCcEEEEEeCc
Confidence 345578899999999999988888888899999999999987621 1 1112222222221 234688999999
Q ss_pred CCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 322 DTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 322 Dl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
|+.+.. ..+++.+. +.........++++++||++|.|+++
T Consensus 130 Dl~~~~--~~~~~~~~----~~~~~~~~~~~~~~~~Sa~~~~gi~~ 169 (186)
T 1ksh_A 130 DLPGAL--SCNAIQEA----LELDSIRSHHWRIQGCSAVTGEDLLP 169 (186)
T ss_dssp TSTTCC--CHHHHHHH----TTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred cCCCCC--CHHHHHHH----hChhhccCCceEEEEeeCCCCCCHHH
Confidence 997521 11222222 21111112346899999999999998
No 90
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.60 E-value=8.2e-16 Score=176.95 Aligned_cols=113 Identities=25% Similarity=0.288 Sum_probs=73.6
Q ss_pred cCCeEEeeeEEEEEECCeEEEEEeCCCcc--------chHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHH
Q psy15197 234 NRGITMDVGQSQFETKTKYITLLDAPGHK--------DFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALL 305 (902)
Q Consensus 234 ~rGiTid~~~~~~~~~~~~i~lIDTPG~~--------df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~ 305 (902)
..|+|+|.....+++.+..+.||||||+. .+...+..++..||++|+|+|++.+.. ....+...+
T Consensus 34 ~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~-------~~d~~~~~~ 106 (436)
T 2hjg_A 34 TPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVT-------AADEEVAKI 106 (436)
T ss_dssp -------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSC-------HHHHHHHHH
T ss_pred CCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCC-------HHHHHHHHH
Confidence 46788888888888889999999999996 577778889999999999999998843 345555565
Q ss_pred HHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 306 VRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 306 l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+...+.| +|+|+||+|+.... .++..+. .+++. +++++||++|.|+.+
T Consensus 107 l~~~~~p-vilv~NK~D~~~~~--------~~~~~~~-~lg~~----~~~~iSA~~g~gv~~ 154 (436)
T 2hjg_A 107 LYRTKKP-VVLAVNKLDNTEMR--------ANIYDFY-SLGFG----EPYPISGTHGLGLGD 154 (436)
T ss_dssp HTTCCSC-EEEEEECCCC-------------CCCSSG-GGSSC----CCEECBTTTTBTHHH
T ss_pred HHHcCCC-EEEEEECccCccch--------hhHHHHH-HcCCC----CeEEEeCcCCCChHH
Confidence 6555654 77999999986411 1111122 23432 679999999999998
No 91
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.60 E-value=2.6e-15 Score=150.49 Aligned_cols=113 Identities=22% Similarity=0.215 Sum_probs=73.9
Q ss_pred eeeEEEEEECC--eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh--CCCeEE
Q psy15197 240 DVGQSQFETKT--KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL--GVNQLG 315 (902)
Q Consensus 240 d~~~~~~~~~~--~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~--~i~~iI 315 (902)
+.....+..++ ..+.||||||+.++...+...+..+|++|+|+|+++... + ......+..+... ...+++
T Consensus 46 ~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~pii 119 (186)
T 2bme_A 46 EFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRET---Y---NALTNWLTDARMLASQNIVII 119 (186)
T ss_dssp EEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCEEE
T ss_pred EEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCcEE
Confidence 33334445555 589999999999999988889999999999999987521 1 0112222222322 224578
Q ss_pred EEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 316 VVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 316 VviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+|+||+|+.+....... +...+.+..+ ++++++||++|.|+.+
T Consensus 120 lv~nK~Dl~~~~~~~~~----~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 162 (186)
T 2bme_A 120 LCGNKKDLDADREVTFL----EASRFAQENE-----LMFLETSALTGENVEE 162 (186)
T ss_dssp EEEECGGGGGGCCSCHH----HHHHHHHHTT-----CEEEECCTTTCTTHHH
T ss_pred EEEECcccccccccCHH----HHHHHHHHcC-----CEEEEecCCCCCCHHH
Confidence 99999998642111111 1222333333 3899999999999998
No 92
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.60 E-value=2.4e-15 Score=152.69 Aligned_cols=109 Identities=20% Similarity=0.194 Sum_probs=72.6
Q ss_pred EEEECC--eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhC--CCeEEEEEec
Q psy15197 245 QFETKT--KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLG--VNQLGVVINK 320 (902)
Q Consensus 245 ~~~~~~--~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~--i~~iIVviNK 320 (902)
.+.+++ ..+.||||||+.++...+...++.+|++|+|+|+++... + ......+..+.... ..++++|+||
T Consensus 67 ~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s---~---~~~~~~~~~i~~~~~~~~piilV~NK 140 (192)
T 2il1_A 67 TVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKET---F---DDLPKWMKMIDKYASEDAELLLVGNK 140 (192)
T ss_dssp EEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCcEEEEEEC
Confidence 344444 579999999999999999999999999999999987622 1 11122233344331 2457899999
Q ss_pred CCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 321 LDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 321 iDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+|+.+......+ +...+.+.+ ..++++++||++|.|+++
T Consensus 141 ~Dl~~~~~v~~~----~~~~~~~~~----~~~~~~~~SA~~g~gi~~ 179 (192)
T 2il1_A 141 LDCETDREITRQ----QGEKFAQQI----TGMRFCEASAKDNFNVDE 179 (192)
T ss_dssp GGGGGGCCSCHH----HHHHHHHTS----TTCEEEECBTTTTBSHHH
T ss_pred cccccccccCHH----HHHHHHHhc----CCCeEEEEeCCCCCCHHH
Confidence 998642111111 122223322 124899999999999998
No 93
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.60 E-value=7.3e-16 Score=157.28 Aligned_cols=105 Identities=21% Similarity=0.169 Sum_probs=69.1
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh---CCCeEEEEEecCCCCCch
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL---GVNQLGVVINKLDTVSWS 327 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~---~i~~iIVviNKiDl~~~~ 327 (902)
..+.||||||+.+|...+...+..+|++|+|+|+++... + ......+..+... ++ ++|+|+||+|+.+..
T Consensus 77 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s---~---~~~~~~~~~i~~~~~~~~-piilv~NK~Dl~~~~ 149 (199)
T 2p5s_A 77 TVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKS---F---LNIREWVDMIEDAAHETV-PIMLVGNKADIRDTA 149 (199)
T ss_dssp EEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHC---C-CEEEEEECGGGHHHH
T ss_pred EEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHH---H---HHHHHHHHHHHHhcCCCC-CEEEEEECccccccc
Confidence 579999999999999999999999999999999987522 1 1122233333332 44 477999999986311
Q ss_pred HH-HHHHH-HHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 328 QD-RFQEI-VTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 328 ~~-~~~~i-~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.. ....+ .++...+.+..++ +++++||++|.|+.+
T Consensus 150 ~~~~~~~v~~~~~~~~~~~~~~-----~~~~~SA~~g~gv~e 186 (199)
T 2p5s_A 150 ATEGQKCVPGHFGEKLAMTYGA-----LFCETSAKDGSNIVE 186 (199)
T ss_dssp HHTTCCCCCHHHHHHHHHHHTC-----EEEECCTTTCTTHHH
T ss_pred ccccccccCHHHHHHHHHHcCC-----eEEEeeCCCCCCHHH
Confidence 00 00000 1122233333443 899999999999998
No 94
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.60 E-value=5.7e-15 Score=150.64 Aligned_cols=103 Identities=17% Similarity=0.154 Sum_probs=70.6
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh--CCCeEEEEEecCCCCCch
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL--GVNQLGVVINKLDTVSWS 327 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~--~i~~iIVviNKiDl~~~~ 327 (902)
...+.||||||+.++...+...+..+|++|+|+|+++... + ......+..+... ...++|+|+||+|+.+..
T Consensus 56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 129 (203)
T 1zbd_A 56 RIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEES---F---NAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDER 129 (203)
T ss_dssp EEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSC
T ss_pred EEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCCEEEEEECcccCccc
Confidence 4689999999999999999999999999999999987521 1 1122233333332 234588999999997521
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 328 QDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 328 ~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.... ++...+.+..++ +++++||++|.|+.+
T Consensus 130 ~~~~----~~~~~~~~~~~~-----~~~~~Sa~~~~gi~~ 160 (203)
T 1zbd_A 130 VVSS----ERGRQLADHLGF-----EFFEASAKDNINVKQ 160 (203)
T ss_dssp CSCH----HHHHHHHHHHTC-----EEEECBTTTTBSSHH
T ss_pred ccCH----HHHHHHHHHCCC-----eEEEEECCCCCCHHH
Confidence 1111 112223333443 899999999999998
No 95
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.60 E-value=2.9e-15 Score=152.13 Aligned_cols=112 Identities=17% Similarity=0.099 Sum_probs=72.7
Q ss_pred EEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHH---hCCCeEEEEEec
Q psy15197 244 SQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRS---LGVNQLGVVINK 320 (902)
Q Consensus 244 ~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~---~~i~~iIVviNK 320 (902)
..+.+++..+.++||||+.++...+...++.+|++|+|+|+++... | ......+..+.. ....++++|+||
T Consensus 60 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~piilv~NK 133 (190)
T 1m2o_B 60 EELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPER---F---DEARVELDALFNIAELKDVPFVILGNK 133 (190)
T ss_dssp EEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGG---H---HHHHHHHHHHHTCGGGTTCCEEEEEEC
T ss_pred EEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHH---H---HHHHHHHHHHHcchhhcCCCEEEEEEC
Confidence 3456678899999999999987777777889999999999997621 1 112222222221 123457899999
Q ss_pred CCCCCchHHHHHHHHHHHHHhhhhcC-------CCCCCceEecCCCccCCCCCC
Q psy15197 321 LDTVSWSQDRFQEIVTKLGAFLKQAG-------FRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 321 iDl~~~~~~~~~~i~~~l~~~l~~~~-------~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+|+.+. ...+++ .+.++... .....++++++||++|.|+.+
T Consensus 134 ~Dl~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 181 (190)
T 1m2o_B 134 IDAPNA--VSEAEL----RSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLE 181 (190)
T ss_dssp TTSTTC--CCHHHH----HHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHH
T ss_pred CCCcCC--CCHHHH----HHHhCCccccccccccccceEEEEEeECCcCCCHHH
Confidence 999751 111222 22222111 011346899999999999998
No 96
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.60 E-value=2e-15 Score=150.24 Aligned_cols=102 Identities=19% Similarity=0.180 Sum_probs=61.8
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh--CCCeEEEEEecCCCCCchH
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL--GVNQLGVVINKLDTVSWSQ 328 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~--~i~~iIVviNKiDl~~~~~ 328 (902)
..+.||||||+.++...+...+..+|++|+|+|+++... + ......+..+... ...++++|+||+|+.+...
T Consensus 60 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~ 133 (180)
T 2g6b_A 60 VKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKAS---F---DNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERV 133 (180)
T ss_dssp EEEEEEECCCC--------CCGGGCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCC
T ss_pred EEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhCCCCCcEEEEEECcccCcccc
Confidence 478999999999998888888999999999999987521 1 1122233333332 2245789999999975211
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 329 DRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 329 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
...+ +...+.+..++ +++++||++|.|+.+
T Consensus 134 ~~~~----~~~~~~~~~~~-----~~~~~Sa~~~~gi~~ 163 (180)
T 2g6b_A 134 VKRE----DGEKLAKEYGL-----PFMETSAKTGLNVDL 163 (180)
T ss_dssp SCHH----HHHHHHHHHTC-----CEEECCTTTCTTHHH
T ss_pred cCHH----HHHHHHHHcCC-----eEEEEeCCCCCCHHH
Confidence 1111 11222333343 789999999999998
No 97
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.60 E-value=4.6e-15 Score=145.12 Aligned_cols=102 Identities=22% Similarity=0.122 Sum_probs=65.9
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHH-hC--CCeEEEEEecCCCCCch
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRS-LG--VNQLGVVINKLDTVSWS 327 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~-~~--i~~iIVviNKiDl~~~~ 327 (902)
..+.||||||+.++...+...+..+|++|+|+|+++... + ......+..+.. .. ..++++|+||+|+.+..
T Consensus 52 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 125 (168)
T 1u8z_A 52 VQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMES---F---AATADFREQILRVKEDENVPFLLVGNKSDLEDKR 125 (168)
T ss_dssp EEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGC
T ss_pred EEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCCcEEEEEECccccccC
Confidence 479999999999999999999999999999999987521 1 011222222222 11 24577999999986421
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 328 QDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 328 ~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
....+ +...+.+..++ +++++||++|.|+.+
T Consensus 126 ~~~~~----~~~~~~~~~~~-----~~~~~Sa~~~~gi~~ 156 (168)
T 1u8z_A 126 QVSVE----EAKNRADQWNV-----NYVETSAKTRANVDK 156 (168)
T ss_dssp CSCHH----HHHHHHHHHTC-----EEEECCTTTCTTHHH
T ss_pred ccCHH----HHHHHHHHcCC-----eEEEeCCCCCCCHHH
Confidence 11111 22233333443 899999999999998
No 98
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.60 E-value=2.3e-15 Score=147.94 Aligned_cols=101 Identities=21% Similarity=0.180 Sum_probs=68.5
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh--CCCeEEEEEecCCCCCchH
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL--GVNQLGVVINKLDTVSWSQ 328 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~--~i~~iIVviNKiDl~~~~~ 328 (902)
..+.||||||+.++...+...+..+|++|+|+|+++... + ......+..+... ...++++|+||+|+.+...
T Consensus 52 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~ 125 (170)
T 1g16_A 52 VKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERT---F---TNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVV 125 (170)
T ss_dssp EEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCS
T ss_pred EEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCcEEEEEECccCCcCcc
Confidence 578999999999988888888999999999999987521 1 1122333333333 1345789999999853111
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 329 DRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 329 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.. ++...+.+..++ +++++||++|.|+.+
T Consensus 126 -~~----~~~~~~~~~~~~-----~~~~~Sa~~~~gv~~ 154 (170)
T 1g16_A 126 -TA----DQGEALAKELGI-----PFIESSAKNDDNVNE 154 (170)
T ss_dssp -CH----HHHHHHHHHHTC-----CEEECBTTTTBSHHH
T ss_pred -CH----HHHHHHHHHcCC-----eEEEEECCCCCCHHH
Confidence 11 112223333443 789999999999998
No 99
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.60 E-value=1e-14 Score=149.34 Aligned_cols=110 Identities=15% Similarity=0.115 Sum_probs=73.5
Q ss_pred EEEEECC--eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh--CCCeEEEEEe
Q psy15197 244 SQFETKT--KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL--GVNQLGVVIN 319 (902)
Q Consensus 244 ~~~~~~~--~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~--~i~~iIVviN 319 (902)
..+.+++ ..+.||||||+.+|...+...++.+|++|+|+|+++... | ......+..+... ...++|+|+|
T Consensus 69 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s---~---~~~~~~~~~i~~~~~~~~piilv~N 142 (201)
T 2hup_A 69 KTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSS---F---LSVPHWIEDVRKYAGSNIVQLLIGN 142 (201)
T ss_dssp EEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHH---H---HTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred EEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCCEEEEEE
Confidence 3444555 589999999999999999999999999999999987521 1 1122333333332 2245779999
Q ss_pred cCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 320 KLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 320 KiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
|+|+.+...... +++..+.+..++ .+++++||++|.||.+
T Consensus 143 K~Dl~~~~~v~~----~~~~~~~~~~~~----~~~~~~SA~~g~gi~~ 182 (201)
T 2hup_A 143 KSDLSELREVSL----AEAQSLAEHYDI----LCAIETSAKDSSNVEE 182 (201)
T ss_dssp CTTCGGGCCSCH----HHHHHHHHHTTC----SEEEECBTTTTBSHHH
T ss_pred CCccccccccCH----HHHHHHHHHcCC----CEEEEEeCCCCCCHHH
Confidence 999964211111 122233344443 1789999999999998
No 100
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.60 E-value=1.9e-15 Score=148.22 Aligned_cols=102 Identities=20% Similarity=0.159 Sum_probs=68.3
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHH-hCCCeEEEEEecCCCCCchHH
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRS-LGVNQLGVVINKLDTVSWSQD 329 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~-~~i~~iIVviNKiDl~~~~~~ 329 (902)
..+.||||||+.++...+...+..+|++|+|+|+++... + ......+..+.. ....++++|+||+|+.+....
T Consensus 54 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~ 127 (168)
T 1z2a_A 54 VRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRES---F---EAISSWREKVVAEVGDIPTALVQNKIDLLDDSCI 127 (168)
T ss_dssp EEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHH---H---HTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSS
T ss_pred EEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhCCCCCEEEEEECcccCccccc
Confidence 579999999999988888888999999999999987521 1 112222222222 122447799999998642111
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 330 RFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 330 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.. +++..+.+..++ +++++||++|.|+.+
T Consensus 128 ~~----~~~~~~~~~~~~-----~~~~~Sa~~~~~i~~ 156 (168)
T 1z2a_A 128 KN----EEAEGLAKRLKL-----RFYRTSVKEDLNVSE 156 (168)
T ss_dssp CH----HHHHHHHHHHTC-----EEEECBTTTTBSSHH
T ss_pred CH----HHHHHHHHHcCC-----eEEEEecCCCCCHHH
Confidence 11 122233334443 899999999999998
No 101
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.59 E-value=1.1e-15 Score=152.66 Aligned_cols=110 Identities=21% Similarity=0.227 Sum_probs=68.4
Q ss_pred EEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHH---hCCCeEEEEEecCC
Q psy15197 246 FETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRS---LGVNQLGVVINKLD 322 (902)
Q Consensus 246 ~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~---~~i~~iIVviNKiD 322 (902)
+.+++..+.+|||||+.++...+...+..+|++|+|+|+++... + ......+..+.. ....++|+|+||+|
T Consensus 57 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~piilv~nK~D 130 (183)
T 1moz_A 57 LSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDR---M---STASKELHLMLQEEELQDAALLVFANKQD 130 (183)
T ss_dssp EEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTT---H---HHHHHHHHHHTTSSTTSSCEEEEEEECTT
T ss_pred EEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHcChhhCCCeEEEEEECCC
Confidence 44567899999999999887777788889999999999987621 1 112222222221 12346889999999
Q ss_pred CCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 323 TVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 323 l~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+.+.. ..+++ ...+.........++++++||++|.|+++
T Consensus 131 l~~~~--~~~~i----~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 169 (183)
T 1moz_A 131 QPGAL--SASEV----SKELNLVELKDRSWSIVASSAIKGEGITE 169 (183)
T ss_dssp STTCC--CHHHH----HHHTTTTTCCSSCEEEEEEBGGGTBTHHH
T ss_pred CCCCC--CHHHH----HHHhCcccccCCceEEEEccCCCCcCHHH
Confidence 97521 11222 22222222222346899999999999998
No 102
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.59 E-value=3e-15 Score=150.01 Aligned_cols=101 Identities=15% Similarity=0.170 Sum_probs=64.4
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh---CCCeEEEEEecCCCCCch
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL---GVNQLGVVINKLDTVSWS 327 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~---~i~~iIVviNKiDl~~~~ 327 (902)
..+.||||||+.++...+...+..+|++|+|+|+++... + ......+..+... ...++++|+||+|+.+..
T Consensus 52 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~ 125 (189)
T 4dsu_A 52 CLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKS---F---EDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRT 125 (189)
T ss_dssp EEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCS
T ss_pred EEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCCcEEEEEECccCcccc
Confidence 357889999999988888899999999999999987521 0 0112222223221 123477999999997421
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 328 QDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 328 ~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.. . +.+..+.+..++ +++++||++|.|+.+
T Consensus 126 ~~--~---~~~~~~~~~~~~-----~~~~~Sa~~g~gi~~ 155 (189)
T 4dsu_A 126 VD--T---KQAQDLARSYGI-----PFIETSAKTRQGVDD 155 (189)
T ss_dssp SC--H---HHHHHHHHHHTC-----CEEECCTTTCTTHHH
T ss_pred cC--H---HHHHHHHHHcCC-----eEEEEeCCCCCCHHH
Confidence 11 1 112222333343 789999999999998
No 103
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.59 E-value=8.7e-16 Score=165.41 Aligned_cols=115 Identities=21% Similarity=0.243 Sum_probs=77.9
Q ss_pred cCCeEEeeeEEEEEECCeEEEEEeCCCccchHH------HHHHHH--HHcCEEEEEEECCCCccccccCCchhhHHHHHH
Q psy15197 234 NRGITMDVGQSQFETKTKYITLLDAPGHKDFIP------NMITGA--TQADVALLVVDATRGEFETGFESGGQTREHALL 305 (902)
Q Consensus 234 ~rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~------~~~~~l--~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~ 305 (902)
..|+|++.....+.+++..+.||||||+.++.. .+...+ ..+|++|+|+|++.. ......+..
T Consensus 33 ~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~---------~~~~~~~~~ 103 (271)
T 3k53_A 33 WPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL---------MRNLFLTLE 103 (271)
T ss_dssp CTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH---------HHHHHHHHH
T ss_pred CCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc---------hhhHHHHHH
Confidence 356777777888899999999999999987543 233333 469999999999864 133444455
Q ss_pred HHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 306 VRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 306 l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+...+..++++|+||+|+.+.... .. ....+.+.+++ |++++||++|.|+.+
T Consensus 104 ~~~~~~~p~ilv~NK~Dl~~~~~~--~~---~~~~l~~~lg~-----~~~~~Sa~~g~gi~~ 155 (271)
T 3k53_A 104 LFEMEVKNIILVLNKFDLLKKKGA--KI---DIKKMRKELGV-----PVIPTNAKKGEGVEE 155 (271)
T ss_dssp HHHTTCCSEEEEEECHHHHHHHTC--CC---CHHHHHHHHSS-----CEEECBGGGTBTHHH
T ss_pred HHhcCCCCEEEEEEChhcCccccc--HH---HHHHHHHHcCC-----cEEEEEeCCCCCHHH
Confidence 556662347799999997531100 00 01122223343 899999999999998
No 104
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.59 E-value=5.1e-15 Score=146.90 Aligned_cols=108 Identities=16% Similarity=0.170 Sum_probs=70.4
Q ss_pred EEEEECC--eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHH-------hCCCeE
Q psy15197 244 SQFETKT--KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRS-------LGVNQL 314 (902)
Q Consensus 244 ~~~~~~~--~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~-------~~i~~i 314 (902)
..+.+++ ..+.||||||+.++...+...+..+|++|+|+|+++... ++ .....+..+.. .+ .++
T Consensus 47 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~~~-~p~ 119 (177)
T 1wms_A 47 KDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQS---FQ---NLSNWKKEFIYYADVKEPES-FPF 119 (177)
T ss_dssp EEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHH---HH---THHHHHHHHHHHHTCSCTTT-SCE
T ss_pred EEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHH---HH---HHHHHHHHHHHHccccccCC-CcE
Confidence 3444555 489999999999999888888899999999999987521 10 11222222221 23 357
Q ss_pred EEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 315 GVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 315 IVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
++|+||+|+.+.. ...++ +..+.+.. ..++++++||++|.|+.+
T Consensus 120 i~v~nK~Dl~~~~-~~~~~----~~~~~~~~----~~~~~~~~Sa~~~~gi~~ 163 (177)
T 1wms_A 120 VILGNKIDISERQ-VSTEE----AQAWCRDN----GDYPYFETSAKDATNVAA 163 (177)
T ss_dssp EEEEECTTCSSCS-SCHHH----HHHHHHHT----TCCCEEECCTTTCTTHHH
T ss_pred EEEEECCcccccc-cCHHH----HHHHHHhc----CCceEEEEeCCCCCCHHH
Confidence 7999999986321 11111 22222211 124899999999999998
No 105
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.59 E-value=1.5e-15 Score=153.30 Aligned_cols=103 Identities=18% Similarity=0.153 Sum_probs=70.5
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh--CCCeEEEEEecCCCCCch
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL--GVNQLGVVINKLDTVSWS 327 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~--~i~~iIVviNKiDl~~~~ 327 (902)
...+.||||||+.++...+...+..+|++|+|+|+++... + ......+..+... ...++++|+||+|+.+..
T Consensus 70 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 143 (189)
T 2gf9_A 70 RIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQES---F---AAVQDWATQIKTYSWDNAQVILVGNKCDLEDER 143 (189)
T ss_dssp EEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGC
T ss_pred EEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCCEEEEEECccccccc
Confidence 4689999999999988778888899999999999987521 1 1223333444443 234578999999996421
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 328 QDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 328 ~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.... +++..+.+..++ +++++||++|.|+.+
T Consensus 144 ~~~~----~~~~~~~~~~~~-----~~~~~Sa~~g~gi~~ 174 (189)
T 2gf9_A 144 VVPA----EDGRRLADDLGF-----EFFEASAKENINVKQ 174 (189)
T ss_dssp CSCH----HHHHHHHHHHTC-----EEEECBTTTTBSHHH
T ss_pred CCCH----HHHHHHHHHcCC-----eEEEEECCCCCCHHH
Confidence 1111 122233334444 899999999999998
No 106
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.59 E-value=1.7e-15 Score=155.57 Aligned_cols=106 Identities=24% Similarity=0.232 Sum_probs=70.5
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhH-HHHHHHHHh--CCCeEEEEEecCCCCCc
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTR-EHALLVRSL--GVNQLGVVINKLDTVSW 326 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~-~~l~~l~~~--~i~~iIVviNKiDl~~~ 326 (902)
...+.||||||+++|...+...++.+|++|+|+|+++.... .... ..+..+... +. ++|+|+||+|+.+.
T Consensus 77 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~-piilv~nK~Dl~~~ 149 (204)
T 4gzl_A 77 PVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASF------ENVRAKWYPEVRHHCPNT-PIILVGTKLDLRDD 149 (204)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHH------HHHHHTHHHHHHHHCSSC-CEEEEEECHHHHTC
T ss_pred EEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHH------HHHHHHHHHHHHHhCCCC-CEEEEEechhhccc
Confidence 34677999999999888888888999999999999976220 0111 233344443 44 47799999998753
Q ss_pred hHHHHHHH---------HHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 327 SQDRFQEI---------VTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 327 ~~~~~~~i---------~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.. ..+.+ .++...+.+..+. .+++++||++|.|+++
T Consensus 150 ~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~SA~~g~gi~~ 194 (204)
T 4gzl_A 150 KD-TIEKLKEKKLTPITYPQGLAMAKEIGA----VKYLECSALTQRGLKT 194 (204)
T ss_dssp HH-HHHHHHHTTCCCCCHHHHHHHHHHTTC----SEEEECCTTTCTTHHH
T ss_pred hh-hhhhhhccccccccHHHHHHHHHhcCC----cEEEEeeCCCCCCHHH
Confidence 21 11111 1223334444443 3799999999999998
No 107
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.59 E-value=2.2e-15 Score=147.26 Aligned_cols=101 Identities=16% Similarity=0.105 Sum_probs=67.8
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHH----hCCCeEEEEEecCCCCCc
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRS----LGVNQLGVVINKLDTVSW 326 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~----~~i~~iIVviNKiDl~~~ 326 (902)
..+.||||||+.++...+...+..+|++++|+|+++... + ......+..+.. .+. ++++|+||+|+.+.
T Consensus 51 ~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~-piilv~nK~Dl~~~ 123 (167)
T 1kao_A 51 SVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQS---F---QDIKPMRDQIIRVKRYEKV-PVILVGNKVDLESE 123 (167)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHTTTSCC-CEEEEEECGGGGGG
T ss_pred EEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHH---H---HHHHHHHHHHHHhcCCCCC-CEEEEEECCccccc
Confidence 459999999999999999999999999999999987521 0 011222222222 244 47799999998642
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 327 SQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 327 ~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
...... +...+.+..++ +++++||++|.|+.+
T Consensus 124 ~~~~~~----~~~~~~~~~~~-----~~~~~Sa~~~~gi~~ 155 (167)
T 1kao_A 124 REVSSS----EGRALAEEWGC-----PFMETSAKSKTMVDE 155 (167)
T ss_dssp CCSCHH----HHHHHHHHHTS-----CEEEECTTCHHHHHH
T ss_pred ccCCHH----HHHHHHHHhCC-----CEEEecCCCCcCHHH
Confidence 111111 12223333343 789999999999998
No 108
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.59 E-value=6e-15 Score=148.15 Aligned_cols=103 Identities=17% Similarity=0.106 Sum_probs=70.1
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh---CCCeEEEEEecCCCCCc
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL---GVNQLGVVINKLDTVSW 326 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~---~i~~iIVviNKiDl~~~ 326 (902)
...+.||||||+.++...+...+..+|++|+|+|++..... ......+..+... ...++++|+||+|+.+.
T Consensus 69 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 142 (195)
T 3bc1_A 69 RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSF------LNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQ 142 (195)
T ss_dssp EEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHH------HTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGG
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHH------HHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 35899999999999999999999999999999999875221 1112333333331 22457799999999642
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 327 SQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 327 ~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
..... +++..+.+..++ +++++||++|.|+.+
T Consensus 143 ~~~~~----~~~~~~~~~~~~-----~~~~~Sa~~~~~v~~ 174 (195)
T 3bc1_A 143 RAVKE----EEARELAEKYGI-----PYFETSAANGTNISH 174 (195)
T ss_dssp CCSCH----HHHHHHHHHHTC-----CEEECCTTTCTTHHH
T ss_pred cccCH----HHHHHHHHHcCC-----CEEEEECCCCCCHHH
Confidence 11111 122223333443 789999999999998
No 109
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.59 E-value=3.7e-15 Score=150.82 Aligned_cols=103 Identities=17% Similarity=0.124 Sum_probs=69.8
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh--CCCeEEEEEecCCCCCch
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL--GVNQLGVVINKLDTVSWS 327 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~--~i~~iIVviNKiDl~~~~ 327 (902)
...+.||||||+.++...+...+..+|++|+|+|++.... + ......+..+... ...++|+|+||+|+.+..
T Consensus 73 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s---~---~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~ 146 (193)
T 2oil_A 73 AVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQT---Y---AVVERWLKELYDHAEATIVVMLVGNKSDLSQAR 146 (193)
T ss_dssp EEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHH---H---HTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGC
T ss_pred EEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCeEEEEEECCCccccc
Confidence 4679999999999998888889999999999999987521 0 1122233333322 134578999999986421
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 328 QDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 328 ~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.... ++...+.+..+ ++++++||++|.|+.+
T Consensus 147 ~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 177 (193)
T 2oil_A 147 EVPT----EEARMFAENNG-----LLFLETSALDSTNVEL 177 (193)
T ss_dssp CSCH----HHHHHHHHHTT-----CEEEEECTTTCTTHHH
T ss_pred ccCH----HHHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 1111 12222333333 3899999999999998
No 110
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.59 E-value=3.8e-15 Score=146.03 Aligned_cols=103 Identities=16% Similarity=0.077 Sum_probs=68.6
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHH----hCCCeEEEEEecCCCCC
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRS----LGVNQLGVVINKLDTVS 325 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~----~~i~~iIVviNKiDl~~ 325 (902)
...+.||||||+.++...+...+..+|++++|+|+++... ++ .....+..+.. .+. ++++|+||+|+.+
T Consensus 50 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~-piilv~nK~Dl~~ 122 (167)
T 1c1y_A 50 QCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQST---FN---DLQDLREQILRVKDTEDV-PMILVGNKCDLED 122 (167)
T ss_dssp EEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHH---HH---THHHHHHHHHHHHCCSCC-CEEEEEECTTCGG
T ss_pred EEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhCcCCC-cEEEEEECccccc
Confidence 4579999999999998888899999999999999987521 11 11222222222 244 4779999999964
Q ss_pred chHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 326 WSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 326 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
......+ ++..+.+..+ ..+++++||++|.|+++
T Consensus 123 ~~~~~~~----~~~~~~~~~~----~~~~~~~Sa~~~~gi~~ 156 (167)
T 1c1y_A 123 ERVVGKE----QGQNLARQWC----NCAFLESSAKSKINVNE 156 (167)
T ss_dssp GCCSCHH----HHHHHHHHTT----SCEEEECBTTTTBSHHH
T ss_pred cccCCHH----HHHHHHHHcc----CCcEEEecCCCCCCHHH
Confidence 2111111 1222233331 24899999999999998
No 111
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.58 E-value=1.3e-14 Score=149.36 Aligned_cols=68 Identities=22% Similarity=0.247 Sum_probs=47.6
Q ss_pred CeEEEEEeCCCccchHH-HHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHH----HHHH----hCCCeEEEEEec
Q psy15197 250 TKYITLLDAPGHKDFIP-NMITGATQADVALLVVDATRGEFETGFESGGQTREHAL----LVRS----LGVNQLGVVINK 320 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~-~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~----~l~~----~~i~~iIVviNK 320 (902)
+..+.||||||+.+|.. .+...++.+|++|+|+|++... ........ .+.. ....++++|+||
T Consensus 53 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK 124 (214)
T 2fh5_B 53 GNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQ--------REVKDVAEFLYQVLIDSMALKNSPSLLIACNK 124 (214)
T ss_dssp CCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHH--------HHHHHHHHHHHHHHHHHHTSTTCCEEEEEEEC
T ss_pred ccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcC--------HHHHHHHHHHHHHHhhhhhcccCCCEEEEEEC
Confidence 56899999999999887 5666788999999999998620 11222222 2221 112468899999
Q ss_pred CCCCC
Q psy15197 321 LDTVS 325 (902)
Q Consensus 321 iDl~~ 325 (902)
+|+.+
T Consensus 125 ~Dl~~ 129 (214)
T 2fh5_B 125 QDIAM 129 (214)
T ss_dssp TTSTT
T ss_pred CCCCC
Confidence 99975
No 112
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=99.58 E-value=2e-15 Score=156.02 Aligned_cols=118 Identities=26% Similarity=0.558 Sum_probs=107.0
Q ss_pred CCCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCcEEEEEEEEEceEeeeeeccCCeEEEeeeccccccce
Q psy15197 397 LTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYVDEMSVSAAYAGDNVSVTLLNYDQQNVS 476 (902)
Q Consensus 397 ~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~~V~sI~~~~~~v~~a~aGdiv~I~l~~~~~~~i~ 476 (902)
.++||+|+|+++|+ +.|+|+.|+|.+|+|++||.|.+.|.+...+|++|++++.++++|.|||+|+|.+.+++..+++
T Consensus 3 ~~~p~rl~v~~v~~--g~G~v~~G~v~~G~i~~Gd~v~i~P~~~~~~V~~I~~~~~~~~~A~aGd~V~l~L~gi~~~di~ 80 (204)
T 3e1y_E 3 LGSPIRLPIVDKYK--DMGTVVLGKLESGSICKGQQLVMMPNKHNVEVLGILSDDVETDTVAPGENLKIRLKGIEEEEIL 80 (204)
T ss_dssp ----CBEEEEEEEE--SSSEEEEEECCBSCEESSCCEEETTTTEEEEEEEECSSSSCBSEECTTSEEEEEEEESSSSCCC
T ss_pred CCCCEEEEEEEEEc--CCCEEEEEEEecCEEECCCEEEECCCCCEEEEEEEEECCEEeEEECCCCEEEEEEcCCCHHHCc
Confidence 46899999999998 7999999999999999999999999999999999999999999999999999999999989999
Q ss_pred eeccccCCCCCCCCcccceeeeeeecccCCcccccc-eecc
Q psy15197 477 VGFLLSELSHPCPVSSKFEARIVVFNITTPITIGYP-VTHD 516 (902)
Q Consensus 477 kG~vL~~~~~~~~~~~~F~a~irvvHakg~ga~G~f-v~~~ 516 (902)
+|++|+++.+++..+..|+|++.++++++....||. +.+.
T Consensus 81 rG~vl~~~~~~~~~~~~f~a~v~~l~~~~~i~~g~~~~l~~ 121 (204)
T 3e1y_E 81 PGFILCDPNNLCHSGRTFDAQIVIIEHKSIICPGYNAVLHI 121 (204)
T ss_dssp TTCEEBCSSSCCCCCSEEEEEEECCSCCSCCCTTEEEEEES
T ss_pred cceEEECCCCCCchhEEEEEEEEEeCCCCccCCCceEEEEE
Confidence 999999998887888999999999998888999987 5543
No 113
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.58 E-value=1.6e-14 Score=144.15 Aligned_cols=101 Identities=23% Similarity=0.150 Sum_probs=68.9
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHH-h---CCCeEEEEEecCCCCCc
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRS-L---GVNQLGVVINKLDTVSW 326 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~-~---~i~~iIVviNKiDl~~~ 326 (902)
..+.||||||+.++...+...+..+|++|+|+|+++... + ......+..+.. . ++ ++++|+||+|+.+.
T Consensus 66 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~-piilv~nK~Dl~~~ 138 (187)
T 2a9k_A 66 VQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMES---F---AATADFREQILRVKEDENV-PFLLVGNKSDLEDK 138 (187)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHHCCTTC-CEEEEEECGGGGGG
T ss_pred EEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCC-CEEEEEECcccccc
Confidence 478999999999999999999999999999999987521 0 011222222222 1 44 47799999998642
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 327 SQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 327 ~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
..... +++..+++..++ +++++||++|.|+.+
T Consensus 139 ~~~~~----~~~~~~~~~~~~-----~~~~~Sa~~~~gi~~ 170 (187)
T 2a9k_A 139 RQVSV----EEAKNRAEQWNV-----NYVETSAKTRANVDK 170 (187)
T ss_dssp CCSCH----HHHHHHHHHTTC-----EEEECCTTTCTTHHH
T ss_pred CccCH----HHHHHHHHHcCC-----eEEEeCCCCCCCHHH
Confidence 11111 222333444443 899999999999998
No 114
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.58 E-value=2.8e-15 Score=154.10 Aligned_cols=109 Identities=18% Similarity=0.167 Sum_probs=72.0
Q ss_pred EEEEECC--eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh--CCCeEEEEEe
Q psy15197 244 SQFETKT--KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL--GVNQLGVVIN 319 (902)
Q Consensus 244 ~~~~~~~--~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~--~i~~iIVviN 319 (902)
..+.+++ ..+.||||||+.+|...+..+++.+|++|+|+|+++... |+ .....+..+... ...++|+|+|
T Consensus 66 ~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s---~~---~~~~~~~~i~~~~~~~~piilv~N 139 (201)
T 2ew1_A 66 KTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEES---FR---CLPEWLREIEQYASNKVITVLVGN 139 (201)
T ss_dssp EEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHH---HH---THHHHHHHHHHHSCTTCEEEEEEE
T ss_pred EEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCEEEEEE
Confidence 3444555 479999999999999888888999999999999987521 11 112233333332 2345779999
Q ss_pred cCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 320 KLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 320 KiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
|+|+.+......+ +...+.+..++ +++++||++|.|+.+
T Consensus 140 K~Dl~~~~~v~~~----~~~~~~~~~~~-----~~~~~Sa~~g~gv~~ 178 (201)
T 2ew1_A 140 KIDLAERREVSQQ----RAEEFSEAQDM-----YYLETSAKESDNVEK 178 (201)
T ss_dssp CGGGGGGCSSCHH----HHHHHHHHHTC-----CEEECCTTTCTTHHH
T ss_pred CCCCccccccCHH----HHHHHHHHcCC-----EEEEEeCCCCCCHHH
Confidence 9998642111111 12222333333 789999999999998
No 115
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.58 E-value=7.2e-15 Score=148.21 Aligned_cols=102 Identities=18% Similarity=0.154 Sum_probs=68.8
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh---CCCeEEEEEecCCCCCc
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL---GVNQLGVVINKLDTVSW 326 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~---~i~~iIVviNKiDl~~~ 326 (902)
...+.||||||+.++...+...++.+|++|+|+|++.... + ......+..+... ...++++|+||+|+...
T Consensus 63 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~ 136 (195)
T 1x3s_A 63 KAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDT---F---VKLDNWLNELETYCTRNDIVNMLVGNKIDKENR 136 (195)
T ss_dssp EEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHH---H---HTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSC
T ss_pred EEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCcCCCcEEEEEECCcCccc
Confidence 4689999999999988888899999999999999987521 0 1112222233221 22457799999998542
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 327 SQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 327 ~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
... .+ +...+.+..+ ++++++||++|.|+.+
T Consensus 137 ~~~-~~----~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 167 (195)
T 1x3s_A 137 EVD-RN----EGLKFARKHS-----MLFIEASAKTCDGVQC 167 (195)
T ss_dssp CSC-HH----HHHHHHHHTT-----CEEEECCTTTCTTHHH
T ss_pred ccC-HH----HHHHHHHHcC-----CEEEEecCCCCCCHHH
Confidence 111 11 1222333333 3899999999999998
No 116
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.58 E-value=1.3e-14 Score=142.62 Aligned_cols=101 Identities=13% Similarity=0.126 Sum_probs=68.7
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh-----CCCeEEEEEecCCCCC
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL-----GVNQLGVVINKLDTVS 325 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~-----~i~~iIVviNKiDl~~ 325 (902)
..+.||||||+.++...+...+..+|++|+|+|+++... + ......+..+... +. ++++|+||+|+.+
T Consensus 51 ~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~---~~~~~~~~~i~~~~~~~~~~-pii~v~nK~Dl~~ 123 (172)
T 2erx_A 51 CTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQS---L---EELKPIYEQICEIKGDVESI-PIMLVGNKCDESP 123 (172)
T ss_dssp EEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHH---H---HTTHHHHHHHHHHHC---CC-CEEEEEECGGGGG
T ss_pred EEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHH---H---HHHHHHHHHHHHHhCCCCCC-CEEEEEEcccccc
Confidence 578999999999999999999999999999999986521 1 1222333333332 34 4779999999864
Q ss_pred chHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 326 WSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 326 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
....... +...+.+..+ ++++++||++|.|+.+
T Consensus 124 ~~~v~~~----~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 156 (172)
T 2erx_A 124 SREVQSS----EAEALARTWK-----CAFMETSAKLNHNVKE 156 (172)
T ss_dssp GCCSCHH----HHHHHHHHHT-----CEEEECBTTTTBSHHH
T ss_pred ccccCHH----HHHHHHHHhC-----CeEEEecCCCCcCHHH
Confidence 2111111 1122223333 3889999999999998
No 117
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.58 E-value=1.5e-14 Score=151.05 Aligned_cols=122 Identities=16% Similarity=0.211 Sum_probs=72.1
Q ss_pred eEEeeeEEEEEECCeEEEEEeCCCc------cch---HHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHH
Q psy15197 237 ITMDVGQSQFETKTKYITLLDAPGH------KDF---IPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVR 307 (902)
Q Consensus 237 iTid~~~~~~~~~~~~i~lIDTPG~------~df---~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~ 307 (902)
+|.+.....+..++..+.||||||+ ... ..........+|++|+|+|+++... |+. ......+..+.
T Consensus 62 ~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~-~~~~~~~~~l~ 137 (228)
T 2qu8_A 62 TTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCG---LTI-KEQINLFYSIK 137 (228)
T ss_dssp ---CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTS---SCH-HHHHHHHHHHH
T ss_pred cceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccC---cch-HHHHHHHHHHH
Confidence 4455555566677889999999999 331 1223334567899999999987622 110 11223334444
Q ss_pred Hh--CCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 308 SL--GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 308 ~~--~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.. ++ ++|+|+||+|+.+.... .....+.+..+.+..+ ..++++++||++|.||.+
T Consensus 138 ~~~~~~-piilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~SA~~g~gi~~ 194 (228)
T 2qu8_A 138 SVFSNK-SIVIGFNKIDKCNMDSL-SIDNKLLIKQILDNVK---NPIKFSSFSTLTGVGVEQ 194 (228)
T ss_dssp TCC-CC-CEEEEEECGGGCC--CC-CHHHHHHHHHHHHHCC---SCEEEEECCTTTCTTHHH
T ss_pred HhhcCC-cEEEEEeCcccCCchhh-HHHHHHHHHHHHHhcC---CCceEEEEecccCCCHHH
Confidence 33 44 47799999998752110 0111222333344333 124899999999999998
No 118
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.58 E-value=4.9e-15 Score=152.95 Aligned_cols=100 Identities=19% Similarity=0.155 Sum_probs=69.4
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh------CCCeEEEEEecCCC
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL------GVNQLGVVINKLDT 323 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~------~i~~iIVviNKiDl 323 (902)
...+.||||||+.+|...+...+..+|++|+|+|+++.. .......++... ...++|+|+||+|+
T Consensus 83 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~---------s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl 153 (217)
T 2f7s_A 83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQ---------SFLNVRNWMSQLQANAYCENPDIVLIGNKADL 153 (217)
T ss_dssp EEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHH---------HHHHHHHHHHTCCCCCTTTCCEEEEEEECTTC
T ss_pred eEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHH---------HHHHHHHHHHHHHHhcCcCCCCEEEEEECCcc
Confidence 467999999999999999999999999999999998752 112222223322 23468899999999
Q ss_pred CCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 324 VSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 324 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.+...... +++..+.+..++ +++++||++|.||.+
T Consensus 154 ~~~~~v~~----~~~~~~~~~~~~-----~~~~~Sa~~g~gi~~ 188 (217)
T 2f7s_A 154 PDQREVNE----RQARELADKYGI-----PYFETSAATGQNVEK 188 (217)
T ss_dssp GGGCCSCH----HHHHHHHHHTTC-----CEEEEBTTTTBTHHH
T ss_pred ccccccCH----HHHHHHHHHCCC-----cEEEEECCCCCCHHH
Confidence 64211111 122233334443 789999999999998
No 119
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.57 E-value=2.3e-15 Score=150.61 Aligned_cols=113 Identities=17% Similarity=0.115 Sum_probs=61.2
Q ss_pred eeeEEEEEECC--eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh--CCCeEE
Q psy15197 240 DVGQSQFETKT--KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL--GVNQLG 315 (902)
Q Consensus 240 d~~~~~~~~~~--~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~--~i~~iI 315 (902)
+.....+.+++ ..+.||||||+.+|...+...++.+|++|+|+|+++... | ......+..+... ...+++
T Consensus 44 ~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~pii 117 (183)
T 2fu5_C 44 DFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKS---F---DNIRNWIRNIEEHASADVEKM 117 (183)
T ss_dssp EEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHSCTTCEEE
T ss_pred eeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCCEE
Confidence 33334455555 689999999999988888888899999999999987521 1 1222333333332 124578
Q ss_pred EEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 316 VVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 316 VviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+|+||+|+.+......+ ++..+.+..++ +++++||++|.|+.+
T Consensus 118 lv~nK~Dl~~~~~v~~~----~~~~~~~~~~~-----~~~~~Sa~~~~~i~~ 160 (183)
T 2fu5_C 118 ILGNKCDVNDKRQVSKE----RGEKLALDYGI-----KFMETSAKANINVEN 160 (183)
T ss_dssp EEEEC--CCSCCCSCHH----HHHHHHHHHTC-----EEEECCC---CCHHH
T ss_pred EEEECccCCccCcCCHH----HHHHHHHHcCC-----eEEEEeCCCCCCHHH
Confidence 99999999742111111 12223333443 899999999999998
No 120
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.57 E-value=2.9e-15 Score=151.63 Aligned_cols=106 Identities=19% Similarity=0.172 Sum_probs=72.7
Q ss_pred EECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh--CCCeEEEEEecCCCC
Q psy15197 247 ETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL--GVNQLGVVINKLDTV 324 (902)
Q Consensus 247 ~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~--~i~~iIVviNKiDl~ 324 (902)
......+.||||||+.+|...+...++.+|++|+|+|+++... | ......+..+... ...++|+|+||+|+.
T Consensus 68 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 141 (191)
T 3dz8_A 68 HEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEES---F---NAVQDWATQIKTYSWDNAQVILVGNKCDME 141 (191)
T ss_dssp TTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred CCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 3356789999999999999999999999999999999987521 1 1223333444442 234578999999986
Q ss_pred CchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 325 SWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 325 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+....... +...+.+..++ +++++||++|.|+.+
T Consensus 142 ~~~~~~~~----~~~~~~~~~~~-----~~~~~Sa~~~~gi~~ 175 (191)
T 3dz8_A 142 EERVVPTE----KGQLLAEQLGF-----DFFEASAKENISVRQ 175 (191)
T ss_dssp GGCCSCHH----HHHHHHHHHTC-----EEEECBTTTTBSHHH
T ss_pred cccccCHH----HHHHHHHHcCC-----eEEEEECCCCCCHHH
Confidence 42111111 12223333343 899999999999998
No 121
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.57 E-value=8.8e-16 Score=177.45 Aligned_cols=110 Identities=25% Similarity=0.222 Sum_probs=66.1
Q ss_pred CCeEEeeeEEEEEECCeEEEEEeCCCccchHHH--------HHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHH
Q psy15197 235 RGITMDVGQSQFETKTKYITLLDAPGHKDFIPN--------MITGATQADVALLVVDATRGEFETGFESGGQTREHALLV 306 (902)
Q Consensus 235 rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~~--------~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l 306 (902)
.|+|++.....+.+++..++||||||++++... +...+..+|++|+|+|++.+.. .+..+.+..+
T Consensus 256 ~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~-------~~~~~i~~~l 328 (462)
T 3geh_A 256 PGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWT-------TGDQEIYEQV 328 (462)
T ss_dssp TTCCHHHHHHEEEETTEEEEECC--------------------CCCCSCSEEEEEEETTTCSC-------HHHHHHHHHH
T ss_pred CCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCC-------HHHHHHHHhc
Confidence 445555555567778999999999999775332 3334567999999999998732 2333333333
Q ss_pred HHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 307 RSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 307 ~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
...++|+|+||+|+.+.... . .++.+. ...+++++||++|.|+++
T Consensus 329 ---~~~piivV~NK~Dl~~~~~~--~--------~~~~~~---~~~~~i~iSAktg~Gi~e 373 (462)
T 3geh_A 329 ---KHRPLILVMNKIDLVEKQLI--T--------SLEYPE---NITQIVHTAAAQKQGIDS 373 (462)
T ss_dssp ---TTSCEEEEEECTTSSCGGGS--T--------TCCCCT---TCCCEEEEBTTTTBSHHH
T ss_pred ---cCCcEEEEEECCCCCcchhh--H--------HHHHhc---cCCcEEEEECCCCCCHHH
Confidence 33468899999999753211 0 111111 234789999999999998
No 122
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.57 E-value=2.1e-14 Score=146.22 Aligned_cols=101 Identities=23% Similarity=0.168 Sum_probs=69.2
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh----CCCeEEEEEecCCCCCc
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL----GVNQLGVVINKLDTVSW 326 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~----~i~~iIVviNKiDl~~~ 326 (902)
..+.||||||+.++...+...+..+|++|+|+|+++... + ......+..+... ++ ++|+|+||+|+.+.
T Consensus 62 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~-piilv~nK~Dl~~~ 134 (206)
T 2bov_A 62 VQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMES---F---AATADFREQILRVKEDENV-PFLLVGNKSDLEDK 134 (206)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHTTCSCC-CEEEEEECTTCGGG
T ss_pred EEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCC-CEEEEEeccCcccc
Confidence 478999999999999999999999999999999987521 1 0112222222222 44 57799999999752
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 327 SQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 327 ~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.....+ ++..+.+..++ +++++||++|.|+++
T Consensus 135 ~~~~~~----~~~~~~~~~~~-----~~~~~Sa~~g~gi~~ 166 (206)
T 2bov_A 135 RQVSVE----EAKNRAEQWNV-----NYVETSAKTRANVDK 166 (206)
T ss_dssp CCSCHH----HHHHHHHHHTC-----EEEEECTTTCTTHHH
T ss_pred ccccHH----HHHHHHHHhCC-----eEEEEeCCCCCCHHH
Confidence 211111 22233333443 899999999999998
No 123
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.57 E-value=1.7e-15 Score=152.82 Aligned_cols=110 Identities=21% Similarity=0.227 Sum_probs=71.0
Q ss_pred EEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh---CCCeEEEEEecCC
Q psy15197 246 FETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL---GVNQLGVVINKLD 322 (902)
Q Consensus 246 ~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~---~i~~iIVviNKiD 322 (902)
+.+++..+.||||||++++...+...++.+|++|+|+|+++... + ......+..+... ...++|+|+||+|
T Consensus 61 ~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~piilv~nK~D 134 (189)
T 2x77_A 61 LQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDR---M---GVAKHELYALLDEDELRKSLLLIFANKQD 134 (189)
T ss_dssp EEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTT---H---HHHHHHHHHHHTCSTTTTCEEEEEEECTT
T ss_pred EEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHH---H---HHHHHHHHHHHhhhhcCCCeEEEEEECCC
Confidence 45568899999999999877666677889999999999987621 1 1112222222221 2345889999999
Q ss_pred CCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 323 TVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 323 l~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+.+... ..++.+.+. ........++++++||++|.|+.+
T Consensus 135 l~~~~~--~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~gi~~ 173 (189)
T 2x77_A 135 LPDAAS--EAEIAEQLG----VSSIMNRTWTIVKSSSKTGDGLVE 173 (189)
T ss_dssp STTCCC--HHHHHHHTT----GGGCCSSCEEEEECCTTTCTTHHH
T ss_pred CcCCCC--HHHHHHHhC----hhhccCCceEEEEccCCCccCHHH
Confidence 975311 122222221 111122345899999999999998
No 124
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.57 E-value=4.7e-15 Score=149.68 Aligned_cols=102 Identities=17% Similarity=0.050 Sum_probs=65.7
Q ss_pred eEEEEEeCCCccchH-HHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh---CCCeEEEEEecCCCCCc
Q psy15197 251 KYITLLDAPGHKDFI-PNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL---GVNQLGVVINKLDTVSW 326 (902)
Q Consensus 251 ~~i~lIDTPG~~df~-~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~---~i~~iIVviNKiDl~~~ 326 (902)
..+.||||||+.+|. ..+...++.+|++|+|+|+++... + ......+..+... ...++|+|+||+|+.+.
T Consensus 69 ~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s---~---~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 142 (189)
T 1z06_A 69 IKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMAS---F---HSLPAWIEECKQHLLANDIPRILVGNKCDLRSA 142 (189)
T ss_dssp EEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHH---H---HTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGG
T ss_pred EEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 589999999999988 677788899999999999987521 1 0112222222222 22347799999999642
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccC---CCCCC
Q psy15197 327 SQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTG---ENLTT 367 (902)
Q Consensus 327 ~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G---~gI~~ 367 (902)
..... ++...+.+..++ +++++||++| .||.+
T Consensus 143 ~~v~~----~~~~~~~~~~~~-----~~~~~Sa~~~~~~~~i~~ 177 (189)
T 1z06_A 143 IQVPT----DLAQKFADTHSM-----PLFETSAKNPNDNDHVEA 177 (189)
T ss_dssp CCSCH----HHHHHHHHHTTC-----CEEECCSSSGGGGSCHHH
T ss_pred ceeCH----HHHHHHHHHcCC-----EEEEEeCCcCCcccCHHH
Confidence 11111 112223333333 7899999999 66665
No 125
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.57 E-value=3.9e-15 Score=149.61 Aligned_cols=113 Identities=21% Similarity=0.274 Sum_probs=73.5
Q ss_pred CCeEEeeeEEEEEECCeEEEEEeCCCccchH------HHHHHHHH--HcCEEEEEEECCCCccccccCCchhhHHHHHHH
Q psy15197 235 RGITMDVGQSQFETKTKYITLLDAPGHKDFI------PNMITGAT--QADVALLVVDATRGEFETGFESGGQTREHALLV 306 (902)
Q Consensus 235 rGiTid~~~~~~~~~~~~i~lIDTPG~~df~------~~~~~~l~--~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l 306 (902)
.|+|++.....+.+++..+.||||||+.++. ......+. .+|++++|+|++.. ......+..+
T Consensus 38 ~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~---------~~~~~~~~~~ 108 (188)
T 2wjg_A 38 PGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL---------ERNLYLTLQL 108 (188)
T ss_dssp TTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGGH---------HHHHHHHHHH
T ss_pred CCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchhH---------HHHHHHHHHH
Confidence 3456666666777888999999999998863 22333443 49999999998742 1233344444
Q ss_pred HHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 307 RSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 307 ~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
...+.| +|+|+||+|+..... .. .....+.+..++ +++++||++|.|+.+
T Consensus 109 ~~~~~p-iilv~nK~Dl~~~~~--~~---~~~~~~~~~~~~-----~~~~~Sa~~~~~v~~ 158 (188)
T 2wjg_A 109 MEMGAN-LLLALNKMDLAKSLG--IE---IDVDKLEKILGV-----KVVPLSAAKKMGIEE 158 (188)
T ss_dssp HTTTCC-EEEEEECHHHHHHTT--CC---CCHHHHHHHHTS-----CEEECBGGGTBSHHH
T ss_pred HhcCCC-EEEEEEhhhcccccc--ch---HHHHHHHHHhCC-----CeEEEEecCCCCHHH
Confidence 445655 779999999753110 00 111222233333 789999999999998
No 126
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.57 E-value=5.2e-15 Score=145.68 Aligned_cols=102 Identities=18% Similarity=0.189 Sum_probs=61.8
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh--CCCeEEEEEecCCCCCchH
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL--GVNQLGVVINKLDTVSWSQ 328 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~--~i~~iIVviNKiDl~~~~~ 328 (902)
..+.||||||+.++...+...++.+|++|+|+|+++... + ......+..+... ...++++|+||+|+.+...
T Consensus 55 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 128 (170)
T 1z08_A 55 VNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDS---F---QKVKNWVKELRKMLGNEICLCIVGNKIDLEKERH 128 (170)
T ss_dssp EEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCC
T ss_pred EEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCeEEEEEECcccccccc
Confidence 478999999999988887778889999999999987521 0 1112222223221 2245779999999864211
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 329 DRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 329 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
...+ +...+.+..+ ++++++||++|.|+.+
T Consensus 129 ~~~~----~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 158 (170)
T 1z08_A 129 VSIQ----EAESYAESVG-----AKHYHTSAKQNKGIEE 158 (170)
T ss_dssp SCHH----HHHHHHHHTT-----CEEEEEBTTTTBSHHH
T ss_pred cCHH----HHHHHHHHcC-----CeEEEecCCCCCCHHH
Confidence 1111 2223334444 3889999999999998
No 127
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.57 E-value=6.1e-15 Score=150.82 Aligned_cols=110 Identities=15% Similarity=0.118 Sum_probs=67.6
Q ss_pred EEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHH----hCCCeEEEEEec
Q psy15197 245 QFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRS----LGVNQLGVVINK 320 (902)
Q Consensus 245 ~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~----~~i~~iIVviNK 320 (902)
.+.+++..+.+|||||+.++...+..+++.+|++|+|+|+++... | ......+..+.. .+ .++|+|+||
T Consensus 63 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s---~---~~~~~~~~~~~~~~~~~~-~piilv~NK 135 (198)
T 1f6b_A 63 ELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHER---L---LESKEELDSLMTDETIAN-VPILILGNK 135 (198)
T ss_dssp EEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGG---H---HHHHHHHHHHHTCGGGTT-SCEEEEEEC
T ss_pred EEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHH---H---HHHHHHHHHHHhCcccCC-CcEEEEEEC
Confidence 355677899999999999887777778889999999999987521 1 111222222221 24 457799999
Q ss_pred CCCCCchHHHHHHHHHHHHHhhhhcC---------CC---CCCceEecCCCccCCCCCC
Q psy15197 321 LDTVSWSQDRFQEIVTKLGAFLKQAG---------FR---DSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 321 iDl~~~~~~~~~~i~~~l~~~l~~~~---------~~---~~~~~ii~iSA~~G~gI~~ 367 (902)
+|+... ...+++.+ .+.... +. ...++++++||++|.|+++
T Consensus 136 ~Dl~~~--~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~ 188 (198)
T 1f6b_A 136 IDRPEA--ISEERLRE----MFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGE 188 (198)
T ss_dssp TTSTTC--CCHHHHHH----HHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHH
T ss_pred CCcccc--CCHHHHHH----HhCcccccccccccccccccCceEEEEEEECCCCCCHHH
Confidence 999741 11122222 222111 10 1246899999999999998
No 128
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.56 E-value=5.6e-15 Score=149.52 Aligned_cols=102 Identities=24% Similarity=0.190 Sum_probs=69.2
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh--CCCeEEEEEecCCCCCchH
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL--GVNQLGVVINKLDTVSWSQ 328 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~--~i~~iIVviNKiDl~~~~~ 328 (902)
..+.||||||+.+|...+...++.+|++|+|+|+++... + ......+..+... ...++++|+||+|+.+...
T Consensus 70 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~ 143 (191)
T 2a5j_A 70 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET---F---NHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRD 143 (191)
T ss_dssp EEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCC
T ss_pred EEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCCEEEEEECcccCCccc
Confidence 579999999999988888889999999999999987521 1 1122333333332 1345779999999964211
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 329 DRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 329 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
... ++...+.+..++ +++++||++|.|+.+
T Consensus 144 v~~----~~~~~~~~~~~~-----~~~~~Sa~~~~gi~~ 173 (191)
T 2a5j_A 144 VKR----EEGEAFAREHGL-----IFMETSAKTACNVEE 173 (191)
T ss_dssp SCH----HHHHHHHHHHTC-----EEEEECTTTCTTHHH
T ss_pred cCH----HHHHHHHHHcCC-----EEEEEeCCCCCCHHH
Confidence 111 112223333443 889999999999998
No 129
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.56 E-value=4.4e-15 Score=149.76 Aligned_cols=101 Identities=14% Similarity=0.105 Sum_probs=70.7
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHH----HHHHHHHh----CCCeEEEEEecC
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTRE----HALLVRSL----GVNQLGVVINKL 321 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~----~l~~l~~~----~i~~iIVviNKi 321 (902)
...+.||||||+.+|...+..+++.+|++|+|+|++++.. .+..+ ...++... ...++|+|+||+
T Consensus 73 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~-------~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~ 145 (198)
T 3t1o_A 73 KTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRL-------RANAESMRNMRENLAEYGLTLDDVPIVIQVNKR 145 (198)
T ss_dssp EEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGH-------HHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECT
T ss_pred ceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchh-------hHhHHHHHHHHHHHHhhccccCCCCEEEEEEch
Confidence 4579999999999999999999999999999999986522 12222 22333332 234577999999
Q ss_pred CCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 322 DTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 322 Dl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
|+.+. .. .+++..+++..++ .+++++||++|.|+.+
T Consensus 146 Dl~~~--~~----~~~~~~~~~~~~~----~~~~~~Sa~~~~gv~~ 181 (198)
T 3t1o_A 146 DLPDA--LP----VEMVRAVVDPEGK----FPVLEAVATEGKGVFE 181 (198)
T ss_dssp TSTTC--CC----HHHHHHHHCTTCC----SCEEECBGGGTBTHHH
T ss_pred hcccc--cC----HHHHHHHHHhcCC----ceEEEEecCCCcCHHH
Confidence 99752 11 1223334444433 2789999999999998
No 130
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.56 E-value=2e-15 Score=156.54 Aligned_cols=116 Identities=15% Similarity=0.098 Sum_probs=76.3
Q ss_pred CCeEEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh-CCCe
Q psy15197 235 RGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL-GVNQ 313 (902)
Q Consensus 235 rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~-~i~~ 313 (902)
.|+|+......+...+..+.||||||+.+|...+...++.+|++|+|+|+++... + ......+..+... ...+
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~p 121 (221)
T 3gj0_A 48 LGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVT---Y---KNVPNWHRDLVRVCENIP 121 (221)
T ss_dssp TTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHH---H---HTHHHHHHHHHHHSTTCC
T ss_pred cceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhCCCCC
Confidence 3455555554444455789999999999988888888999999999999997522 1 1112222333332 2234
Q ss_pred EEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 314 LGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 314 iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+|+|+||+|+.+.... .+...+.+..+ ++++++||++|.|+.+
T Consensus 122 ~ilv~nK~Dl~~~~~~------~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 164 (221)
T 3gj0_A 122 IVLCGNKVDIKDRKVK------AKSIVFHRKKN-----LQYYDISAKSNYNFEK 164 (221)
T ss_dssp EEEEEECTTSSSCSSC------GGGCCHHHHHT-----CEEEECBGGGTBTTTH
T ss_pred EEEEEECCcccccccc------HHHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 7799999999752211 11112223333 3899999999999998
No 131
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.56 E-value=8e-15 Score=145.65 Aligned_cols=101 Identities=20% Similarity=0.138 Sum_probs=66.7
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHH-HH---hCCCeEEEEEecCCCCCc
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLV-RS---LGVNQLGVVINKLDTVSW 326 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l-~~---~~i~~iIVviNKiDl~~~ 326 (902)
..+.||||||+.++...+...+..+|++|+|+|+++... + ......+..+ .. .++ ++++|+||+|+.+.
T Consensus 57 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~-piilv~nK~Dl~~~ 129 (181)
T 2fn4_A 57 ARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQS---F---NEVGKLFTQILRVKDRDDF-PVVLVGNKADLESQ 129 (181)
T ss_dssp EEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHHTSSCC-CEEEEEECGGGGGG
T ss_pred EEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHH---H---HHHHHHHHHHHHhcCCCCC-CEEEEEECcccccc
Confidence 478899999999988888888999999999999987521 0 0112222222 22 244 47799999998642
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 327 SQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 327 ~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
...... +...+....+ ++++++||++|.|+.+
T Consensus 130 ~~v~~~----~~~~~~~~~~-----~~~~~~Sa~~~~gv~~ 161 (181)
T 2fn4_A 130 RQVPRS----EASAFGASHH-----VAYFEASAKLRLNVDE 161 (181)
T ss_dssp CCSCHH----HHHHHHHHTT-----CEEEECBTTTTBSHHH
T ss_pred cccCHH----HHHHHHHHcC-----CeEEEecCCCCCCHHH
Confidence 111111 1122223333 3899999999999998
No 132
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.56 E-value=6e-15 Score=146.70 Aligned_cols=104 Identities=18% Similarity=0.139 Sum_probs=58.2
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHH-------hCCCeEEEEEecCC
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRS-------LGVNQLGVVINKLD 322 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~-------~~i~~iIVviNKiD 322 (902)
...+.||||||+.++...+...++.+|++|+|+|+++... + ......+..+.. .++ ++++|+||+|
T Consensus 57 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~~~~-p~ilv~nK~D 129 (182)
T 1ky3_A 57 VATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASS---F---ENIKSWRDEFLVHANVNSPETF-PFVILGNKID 129 (182)
T ss_dssp CEEEEEECCC----------CCSTTCCEEEEEEETTCHHH---H---HTHHHHHHHHHHHHCCSCTTTC-CEEEEEECTT
T ss_pred EEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHH---H---HHHHHHHHHHHHHhcccCcCCC-cEEEEEECCc
Confidence 4578999999999998888888899999999999987521 1 111222222222 233 5779999999
Q ss_pred CCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 323 TVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 323 l~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+......... +++..+.+.. ...+++++||++|.|+.+
T Consensus 130 l~~~~~~v~~---~~~~~~~~~~----~~~~~~~~Sa~~~~gi~~ 167 (182)
T 1ky3_A 130 AEESKKIVSE---KSAQELAKSL----GDIPLFLTSAKNAINVDT 167 (182)
T ss_dssp SCGGGCCSCH---HHHHHHHHHT----TSCCEEEEBTTTTBSHHH
T ss_pred cccccccCCH---HHHHHHHHhc----CCCeEEEEecCCCCCHHH
Confidence 8642110001 1112222211 124789999999999998
No 133
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.56 E-value=1.4e-14 Score=142.53 Aligned_cols=101 Identities=16% Similarity=0.041 Sum_probs=60.9
Q ss_pred eEEEEEeCCCccchHH-HHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh----CCCeEEEEEecCCCCC
Q psy15197 251 KYITLLDAPGHKDFIP-NMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL----GVNQLGVVINKLDTVS 325 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~-~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~----~i~~iIVviNKiDl~~ 325 (902)
..+.+|||||+.++.. .....++.+|++|+|+|+++... |+ .....+..+... ++ ++++|+||+|+.+
T Consensus 51 ~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~-p~ilv~nK~Dl~~ 123 (169)
T 3q85_A 51 VTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRS---FS---KVPETLLRLRAGRPHHDL-PVILVGNKSDLAR 123 (169)
T ss_dssp EEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHH---HH---THHHHHHHHHHHSTTSCC-CEEEEEECTTCGG
T ss_pred EEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHH---HH---HHHHHHHHHHhcccCCCC-CEEEEeeCcchhh
Confidence 5788999999998866 45556788999999999987521 11 122223223322 44 4779999999864
Q ss_pred chHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 326 WSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 326 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
...... ++...+.+..++ +++++||++|.|+.+
T Consensus 124 ~~~~~~----~~~~~~~~~~~~-----~~~~~Sa~~~~~v~~ 156 (169)
T 3q85_A 124 SREVSL----EEGRHLAGTLSC-----KHIETSAALHHNTRE 156 (169)
T ss_dssp GCCSCH----HHHHHHHHHTTC-----EEEECBTTTTBSHHH
T ss_pred cccCCH----HHHHHHHHHcCC-----cEEEecCccCCCHHH
Confidence 211111 122233334443 899999999999998
No 134
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.55 E-value=9.1e-15 Score=144.61 Aligned_cols=101 Identities=13% Similarity=0.061 Sum_probs=59.5
Q ss_pred eEEEEEeCCCccc--hHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh----CCCeEEEEEecCCCC
Q psy15197 251 KYITLLDAPGHKD--FIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL----GVNQLGVVINKLDTV 324 (902)
Q Consensus 251 ~~i~lIDTPG~~d--f~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~----~i~~iIVviNKiDl~ 324 (902)
..+.||||||+.+ +.......++.+|++|+|+|+++... | ......+..+... ++ ++|+|+||+|+.
T Consensus 52 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~l~~~~~~~~~-piilv~NK~Dl~ 124 (175)
T 2nzj_A 52 TTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGS---F---ESASELRIQLRRTHQADHV-PIILVGNKADLA 124 (175)
T ss_dssp EEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHH---H---HHHHHHHHHHHHCC----C-CEEEEEECTTCT
T ss_pred EEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhhccCCC-CEEEEEEChhhc
Confidence 4789999999987 33444455677999999999987521 1 0122233333332 44 477999999997
Q ss_pred CchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 325 SWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 325 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+......+ +...+....++ +++++||++|.|+.+
T Consensus 125 ~~~~v~~~----~~~~~~~~~~~-----~~~~~Sa~~g~gi~~ 158 (175)
T 2nzj_A 125 RCREVSVE----EGRACAVVFDC-----KFIETSATLQHNVAE 158 (175)
T ss_dssp TTCCSCHH----HHHHHHHHHTS-----EEEECBTTTTBSHHH
T ss_pred cccccCHH----HHHHHHHHcCC-----eEEEEecCCCCCHHH
Confidence 52111111 11222233333 899999999999998
No 135
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.55 E-value=1.5e-14 Score=144.68 Aligned_cols=101 Identities=18% Similarity=0.194 Sum_probs=67.0
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHH----hCCCeEEEEEecCCCCCc
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRS----LGVNQLGVVINKLDTVSW 326 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~----~~i~~iIVviNKiDl~~~ 326 (902)
..+.||||||+.++.......++.+|++|+|+|+++... |+ .....+..+.. .++ ++|+|+||+|+.+.
T Consensus 66 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~-p~ilv~nK~Dl~~~ 138 (183)
T 3kkq_A 66 AILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKAS---FE---HVDRFHQLILRVKDRESF-PMILVANKVDLMHL 138 (183)
T ss_dssp EEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHH---HH---THHHHHHHHHHHHTSSCC-CEEEEEECTTCSTT
T ss_pred EEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCC-cEEEEEECCCchhc
Confidence 356779999999988888889999999999999987521 11 11222222222 234 47799999998642
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCc-cCCCCCC
Q psy15197 327 SQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGL-TGENLTT 367 (902)
Q Consensus 327 ~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~-~G~gI~~ 367 (902)
.....+ +...+.+..++ +++++||+ +|.|+.+
T Consensus 139 ~~v~~~----~~~~~~~~~~~-----~~~~~Sa~~~~~~v~~ 171 (183)
T 3kkq_A 139 RKVTRD----QGKEMATKYNI-----PYIETSAKDPPLNVDK 171 (183)
T ss_dssp CCSCHH----HHHHHHHHHTC-----CEEEEBCSSSCBSHHH
T ss_pred cCcCHH----HHHHHHHHhCC-----eEEEeccCCCCCCHHH
Confidence 111111 12223333443 79999999 9999998
No 136
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.55 E-value=1.2e-14 Score=148.64 Aligned_cols=107 Identities=16% Similarity=0.137 Sum_probs=70.6
Q ss_pred EEECC--eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh--CCCeEEEEEecC
Q psy15197 246 FETKT--KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL--GVNQLGVVINKL 321 (902)
Q Consensus 246 ~~~~~--~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~--~i~~iIVviNKi 321 (902)
+.+++ ..+.||||||+.+|...+...+..+|++|+|+|+++... + ......+..+... ...++|+|+||+
T Consensus 50 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s---~---~~~~~~~~~i~~~~~~~~piilv~nK~ 123 (206)
T 2bcg_Y 50 VELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQES---F---NGVKMWLQEIDRYATSTVLKLLVGNKC 123 (206)
T ss_dssp EEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHSCTTCEEEEEEECT
T ss_pred EEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCCEEEEEECC
Confidence 34444 479999999999988878888899999999999987521 0 1112223333332 224577999999
Q ss_pred CCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 322 DTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 322 Dl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
|+.+......+ +...+.+..++ +++++||++|.|+.+
T Consensus 124 Dl~~~~~~~~~----~~~~~~~~~~~-----~~~~~Sa~~g~gi~~ 160 (206)
T 2bcg_Y 124 DLKDKRVVEYD----VAKEFADANKM-----PFLETSALDSTNVED 160 (206)
T ss_dssp TCTTTCCSCHH----HHHHHHHHTTC-----CEEECCTTTCTTHHH
T ss_pred CCccccccCHH----HHHHHHHHcCC-----eEEEEeCCCCCCHHH
Confidence 99752111111 12223333333 789999999999998
No 137
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.55 E-value=1.5e-14 Score=153.93 Aligned_cols=120 Identities=14% Similarity=0.055 Sum_probs=74.8
Q ss_pred CeEEeeeEEEEEECCeEEEEEeCCCc--------cchHHHHHHHH----HHcCEEEEEEECCCCccccccCCchhhHHHH
Q psy15197 236 GITMDVGQSQFETKTKYITLLDAPGH--------KDFIPNMITGA----TQADVALLVVDATRGEFETGFESGGQTREHA 303 (902)
Q Consensus 236 GiTid~~~~~~~~~~~~i~lIDTPG~--------~df~~~~~~~l----~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l 303 (902)
|+|.......+.+++..++||||||+ .++...+..++ ..+|++|+|+|++. .. ..+...+
T Consensus 55 ~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~-------~~~~~~~ 126 (247)
T 3lxw_A 55 SVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR-FT-------AQDQQAV 126 (247)
T ss_dssp --CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB-CC-------HHHHHHH
T ss_pred CccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-CC-------HHHHHHH
Confidence 34555556667788999999999998 55666676666 78999999999974 22 3445555
Q ss_pred HHHHHh------CCCeEEEEEecCCCCCchHHHHHHH--HHHHHHhhhhcCCCCCCceEecCCCc---cCCCCCC
Q psy15197 304 LLVRSL------GVNQLGVVINKLDTVSWSQDRFQEI--VTKLGAFLKQAGFRDSDIEYVPCSGL---TGENLTT 367 (902)
Q Consensus 304 ~~l~~~------~i~~iIVviNKiDl~~~~~~~~~~i--~~~l~~~l~~~~~~~~~~~ii~iSA~---~G~gI~~ 367 (902)
..+... + .++|+|.||+|+.+.+.+.+... .+.+..+++.++.. +.++..++. .+.|+.+
T Consensus 127 ~~l~~~~~~~~~~-~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~~---~~~~~~~~~~~~~~~~v~~ 197 (247)
T 3lxw_A 127 RQVRDMFGEDVLK-WMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGGR---VCAFDNRATGREQEAQVEQ 197 (247)
T ss_dssp HHHHHHHCGGGGG-GEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTC---EEECCTTCCHHHHHHHHHH
T ss_pred HHHHHHhChhhhc-cEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcCCe---EEEEeCCCCccccHHHHHH
Confidence 555553 3 45779999999975332221111 03355666666541 222333332 2577777
No 138
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.55 E-value=8.5e-15 Score=149.75 Aligned_cols=107 Identities=22% Similarity=0.201 Sum_probs=70.5
Q ss_pred EEECC--eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh--CCCeEEEEEecC
Q psy15197 246 FETKT--KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL--GVNQLGVVINKL 321 (902)
Q Consensus 246 ~~~~~--~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~--~i~~iIVviNKi 321 (902)
+..++ ..+.||||||+.++...+...++.+|++|+|+|+++... + ......+..+... ...++++|+||+
T Consensus 67 ~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~piilv~nK~ 140 (200)
T 2o52_A 67 VNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRET---Y---NSLAAWLTDARTLASPNIVVILCGNKK 140 (200)
T ss_dssp EEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHTCTTCEEEEEEECG
T ss_pred EEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCcEEEEEECC
Confidence 34444 689999999999887778888999999999999987521 1 1112223333322 124578999999
Q ss_pred CCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 322 DTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 322 Dl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
|+.+....... +...+.+..+ ++++++||++|.|+.+
T Consensus 141 Dl~~~~~v~~~----~~~~~~~~~~-----~~~~~~SA~~g~gi~~ 177 (200)
T 2o52_A 141 DLDPEREVTFL----EASRFAQENE-----LMFLETSALTGENVEE 177 (200)
T ss_dssp GGGGGCCSCHH----HHHHHHHHTT-----CEEEEECTTTCTTHHH
T ss_pred CcccccccCHH----HHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 98642111111 1222333333 3899999999999998
No 139
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.55 E-value=1e-14 Score=155.68 Aligned_cols=119 Identities=18% Similarity=0.175 Sum_probs=72.8
Q ss_pred eEEeeeEEEEEECCeEEEEEeCCCccch-----------HHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHH
Q psy15197 237 ITMDVGQSQFETKTKYITLLDAPGHKDF-----------IPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALL 305 (902)
Q Consensus 237 iTid~~~~~~~~~~~~i~lIDTPG~~df-----------~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~ 305 (902)
+|++.....+.++++.++||||||+.++ ...+..+++.+|++|+|+|++. .. .+....+..
T Consensus 57 ~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~-------~~~~~~~~~ 128 (260)
T 2xtp_A 57 LTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-YT-------SQDQQAAQR 128 (260)
T ss_dssp CCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-CC-------HHHHHHHHH
T ss_pred eeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-CC-------HHHHHHHHH
Confidence 4555555567788999999999999764 3333445677999999999985 21 345555555
Q ss_pred HHHh-----CCCeEEEEEe-cCCCCCchHHHHHHHH-----HHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 306 VRSL-----GVNQLGVVIN-KLDTVSWSQDRFQEIV-----TKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 306 l~~~-----~i~~iIVviN-KiDl~~~~~~~~~~i~-----~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+... +.+.+ +++| |+|+.+.+. .... +++..+++.++.....+..+++||++|.|+.+
T Consensus 129 l~~~~~~~~~~~~i-~vv~nK~Dl~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~ 197 (260)
T 2xtp_A 129 VKEIFGEDAMGHTI-VLFTHKEDLNGGSL---MDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKE 197 (260)
T ss_dssp HHHHHCGGGGGGEE-EEEECGGGGTTCCH---HHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHH
T ss_pred HHHHhCchhhccEE-EEEEcccccCCccH---HHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHH
Confidence 5554 44544 6666 999975321 1111 11222333333110001117899999999998
No 140
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.55 E-value=1.3e-14 Score=144.91 Aligned_cols=105 Identities=25% Similarity=0.289 Sum_probs=68.6
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhH-HHHHHHHHh--CCCeEEEEEecCCCCCch
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTR-EHALLVRSL--GVNQLGVVINKLDTVSWS 327 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~-~~l~~l~~~--~i~~iIVviNKiDl~~~~ 327 (902)
..+.||||||+.+|...+...+..+|++|+|+|+++... + .... ..+..+... +. ++|+|+||+|+.+..
T Consensus 53 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~-piilv~nK~Dl~~~~ 125 (186)
T 1mh1_A 53 VNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPAS---F---ENVRAKWYPEVRHHCPNT-PIILVGTKLDLRDDK 125 (186)
T ss_dssp EEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHH---H---HHHHHTHHHHHHHHSTTS-CEEEEEECHHHHTCH
T ss_pred EEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhh---H---HHHHHHHHHHHHHhCCCC-CEEEEeEcccccccc
Confidence 467799999999988777778889999999999987521 0 0111 233334433 44 477999999986521
Q ss_pred HHHHHHH---------HHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 328 QDRFQEI---------VTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 328 ~~~~~~i---------~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
. ..+.+ .++...+.+..+. .+++++||++|.|+++
T Consensus 126 ~-~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~g~gi~~ 169 (186)
T 1mh1_A 126 D-TIEKLKEKKLTPITYPQGLAMAKEIGA----VKYLECSALTQRGLKT 169 (186)
T ss_dssp H-HHHHHHHTTCCCCCHHHHHHHHHHTTC----SEEEECCTTTCTTHHH
T ss_pred h-hhhhhcccccccCCHHHHHHHHHhcCC----cEEEEecCCCccCHHH
Confidence 1 11111 1122233333332 3899999999999998
No 141
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.55 E-value=2.5e-15 Score=162.19 Aligned_cols=111 Identities=19% Similarity=0.204 Sum_probs=70.5
Q ss_pred CeEEeeeEEEEEECCeEEEEEeCCCccchH------HHHHHHHH--HcCEEEEEEECCCCccccccCCchhhHHHHHHHH
Q psy15197 236 GITMDVGQSQFETKTKYITLLDAPGHKDFI------PNMITGAT--QADVALLVVDATRGEFETGFESGGQTREHALLVR 307 (902)
Q Consensus 236 GiTid~~~~~~~~~~~~i~lIDTPG~~df~------~~~~~~l~--~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~ 307 (902)
|+|++.....+.. +..+.||||||+.++. ..+...+. .+|++|+|+|++.. .........+.
T Consensus 35 g~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~---------e~~~~~~~~l~ 104 (272)
T 3b1v_A 35 GVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNL---------ERNLYLTTQLI 104 (272)
T ss_dssp CCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGH---------HHHHHHHHHHH
T ss_pred CCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCch---------HhHHHHHHHHH
Confidence 4455444444444 6689999999998864 23344454 59999999999863 12233334455
Q ss_pred HhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 308 SLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 308 ~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
..++| +|+|+||+|+..... .. .....+.+.+++ +++++||++|.|+++
T Consensus 105 ~~~~p-~ilv~NK~Dl~~~~~--~~---~~~~~l~~~lg~-----~vi~~SA~~g~gi~e 153 (272)
T 3b1v_A 105 ETGIP-VTIALNMIDVLDGQG--KK---INVDKLSYHLGV-----PVVATSALKQTGVDQ 153 (272)
T ss_dssp HTCSC-EEEEEECHHHHHHTT--CC---CCHHHHHHHHTS-----CEEECBTTTTBSHHH
T ss_pred hcCCC-EEEEEEChhhCCcCC--cH---HHHHHHHHHcCC-----CEEEEEccCCCCHHH
Confidence 56766 679999999753110 00 011122223343 899999999999998
No 142
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.54 E-value=6.2e-15 Score=163.48 Aligned_cols=114 Identities=20% Similarity=0.140 Sum_probs=71.4
Q ss_pred EEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh--CCCeEEEEEec
Q psy15197 243 QSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL--GVNQLGVVINK 320 (902)
Q Consensus 243 ~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~--~i~~iIVviNK 320 (902)
...+...+..+.||||||+.+|...+..+++.+|++|+|+|+++... | .........++... ...++|||+||
T Consensus 201 ~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s---~--~~~~~~~~~~~~~~~~~~~piilV~NK 275 (329)
T 3o47_A 201 VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER---V--NEAREELMRMLAEDELRDAVLLVFANK 275 (329)
T ss_dssp EEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSS---H--HHHHHHHHHHHTCGGGTTCEEEEEEEC
T ss_pred EEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHH---H--HHHHHHHHHHHhhhccCCCeEEEEEEC
Confidence 34466788999999999999998888899999999999999986521 1 11112222222222 13458899999
Q ss_pred CCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 321 LDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 321 iDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+|+.+.. ...++...+ .........++++++||++|.||++
T Consensus 276 ~Dl~~~~--~~~~i~~~~----~~~~~~~~~~~~~~vSAk~g~gi~e 316 (329)
T 3o47_A 276 QDLPNAM--NAAEITDKL----GLHSLRHRNWYIQATCATSGDGLYE 316 (329)
T ss_dssp TTSTTCC--CHHHHHHHH----TCTTCCSSCEEEEECBTTTTBTHHH
T ss_pred ccCCccc--CHHHHHHHh----chhhhhcCCCEEEEEECCCCcCHHH
Confidence 9997532 122332322 1111223456899999999999998
No 143
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.54 E-value=3e-14 Score=138.78 Aligned_cols=100 Identities=15% Similarity=0.198 Sum_probs=68.0
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh----CCCeEEEEEecCCCCCc
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL----GVNQLGVVINKLDTVSW 326 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~----~i~~iIVviNKiDl~~~ 326 (902)
..+.||||||+.++...+...+..+|++++|+|+++... + ......+..+... ++ ++++|+||+|+.+.
T Consensus 51 ~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~---~~~~~~~~~i~~~~~~~~~-p~iiv~nK~Dl~~~ 123 (166)
T 2ce2_X 51 CLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKS---F---EDIHQYREQIKRVKDSDDV-PMVLVGNKSDLAAR 123 (166)
T ss_dssp EEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHHTCSCC-CEEEEEECTTCSCC
T ss_pred EEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCC-cEEEEEEchhhhhc
Confidence 468899999999988888889999999999999986521 0 1122223333322 44 47799999998752
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 327 SQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 327 ~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.. . .++...+.+..++ +++++||++|.|+.+
T Consensus 124 ~~-~----~~~~~~~~~~~~~-----~~~~~Sa~~~~gi~~ 154 (166)
T 2ce2_X 124 TV-E----SRQAQDLARSYGI-----PYIETSAKTRQGVED 154 (166)
T ss_dssp CS-C----HHHHHHHHHHHTC-----CEEEECTTTCTTHHH
T ss_pred cc-C----HHHHHHHHHHcCC-----eEEEecCCCCCCHHH
Confidence 11 1 1112223333443 789999999999998
No 144
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.54 E-value=2.4e-14 Score=145.77 Aligned_cols=110 Identities=18% Similarity=0.196 Sum_probs=70.8
Q ss_pred CeEEEEEeCCCccchHHHH---HHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHH----hCCCeEEEEEecCC
Q psy15197 250 TKYITLLDAPGHKDFIPNM---ITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRS----LGVNQLGVVINKLD 322 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~---~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~----~~i~~iIVviNKiD 322 (902)
...+.||||||+++|.... ...++.+|++|+|+|+++...+ .......++.. ....++++|+||+|
T Consensus 68 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~-------~~~~~~~~l~~~~~~~~~~piilv~nK~D 140 (196)
T 3llu_A 68 FVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYME-------ALTRLHITVSKAYKVNPDMNFEVFIHKVD 140 (196)
T ss_dssp SCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHH-------HHHHHHHHHHHHHHHCTTCEEEEEEECGG
T ss_pred eeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHH-------HHHHHHHHHHHHHhcCCCCcEEEEEeccc
Confidence 4689999999999987777 7889999999999999986221 22222233332 22345789999999
Q ss_pred CCCchH--HHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 323 TVSWSQ--DRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 323 l~~~~~--~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+.+.+. +....+..+....+.........++++++||++ .||.+
T Consensus 141 l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~ 186 (196)
T 3llu_A 141 GLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFE 186 (196)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHH
T ss_pred cCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHH
Confidence 875221 112222222222222222112345899999999 99998
No 145
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.54 E-value=7.6e-15 Score=149.84 Aligned_cols=101 Identities=19% Similarity=0.157 Sum_probs=65.9
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHH-HH------hCCCeEEEEEecCCC
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLV-RS------LGVNQLGVVINKLDT 323 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l-~~------~~i~~iIVviNKiDl 323 (902)
..+.||||||+.++...+...++.+|++|+|+|++++.. + ......+..+ .. .++ ++++|+||+|+
T Consensus 57 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~~~~-piilv~nK~Dl 129 (207)
T 1vg8_A 57 VTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNT---F---KTLDSWRDEFLIQASPRDPENF-PFVVLGNKIDL 129 (207)
T ss_dssp EEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHHCCSSGGGS-CEEEEEECTTS
T ss_pred EEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHH---H---HHHHHHHHHHHHhcccccCCCC-cEEEEEECCCC
Confidence 579999999999987777778889999999999987521 1 0111222222 22 243 47799999999
Q ss_pred CCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 324 VSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 324 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.+... ..++ +..+.+.. ..++++++||++|.|+.+
T Consensus 130 ~~~~~-~~~~----~~~~~~~~----~~~~~~~~Sa~~g~gi~~ 164 (207)
T 1vg8_A 130 ENRQV-ATKR----AQAWCYSK----NNIPYFETSAKEAINVEQ 164 (207)
T ss_dssp SCCCS-CHHH----HHHHHHHT----TSCCEEECBTTTTBSHHH
T ss_pred ccccc-CHHH----HHHHHHhc----CCceEEEEeCCCCCCHHH
Confidence 74211 1111 22222211 124899999999999998
No 146
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.54 E-value=5.7e-15 Score=152.52 Aligned_cols=101 Identities=18% Similarity=0.076 Sum_probs=67.4
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh---CCCeEEEEEecCCCCCch
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL---GVNQLGVVINKLDTVSWS 327 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~---~i~~iIVviNKiDl~~~~ 327 (902)
..+.||||||+.++.......+..+|++|+|+|++++... ......+..+... +. ++|+|+||+|+.+..
T Consensus 61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~-piilv~nK~Dl~~~~ 133 (218)
T 4djt_A 61 IKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITC------QNLARWVKEFQAVVGNEA-PIVVCANKIDIKNRQ 133 (218)
T ss_dssp EEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHH------HTHHHHHHHHHHHHCSSS-CEEEEEECTTCC---
T ss_pred EEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHH------HHHHHHHHHHHHhcCCCC-CEEEEEECCCCcccc
Confidence 6799999999999887788888999999999999976321 1112222333322 33 577999999997421
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 328 QDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 328 ~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.. ..+....+.+..+ ++++++||++|.|+.+
T Consensus 134 ~~----~~~~~~~~~~~~~-----~~~~~~Sa~~g~gv~~ 164 (218)
T 4djt_A 134 KI----SKKLVMEVLKGKN-----YEYFEISAKTAHNFGL 164 (218)
T ss_dssp -C----CHHHHHHHTTTCC-----CEEEEEBTTTTBTTTH
T ss_pred cc----CHHHHHHHHHHcC-----CcEEEEecCCCCCHHH
Confidence 11 1112223333333 4899999999999998
No 147
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.54 E-value=9.4e-15 Score=169.08 Aligned_cols=113 Identities=25% Similarity=0.287 Sum_probs=76.7
Q ss_pred cCCeEEeeeEEEEEECCeEEEEEeCCC--------ccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHH
Q psy15197 234 NRGITMDVGQSQFETKTKYITLLDAPG--------HKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALL 305 (902)
Q Consensus 234 ~rGiTid~~~~~~~~~~~~i~lIDTPG--------~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~ 305 (902)
..|+|++.....+++.+..+.|||||| +..+...+..++..+|++|+|+|+..+.. ....+.+.+
T Consensus 54 ~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~-------~~d~~l~~~ 126 (456)
T 4dcu_A 54 TPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVT-------AADEEVAKI 126 (456)
T ss_dssp -------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSC-------HHHHHHHHH
T ss_pred CCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCC-------hHHHHHHHH
Confidence 457888888888888899999999999 66688888999999999999999988743 456666677
Q ss_pred HHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 306 VRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 306 l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+...+.| +|+|+||+|+.+.. .....+. .+++. +++++||++|.|+.+
T Consensus 127 l~~~~~p-vilV~NK~D~~~~~--------~~~~e~~-~lg~~----~~~~iSA~~g~gv~~ 174 (456)
T 4dcu_A 127 LYRTKKP-VVLAVNKLDNTEMR--------ANIYDFY-SLGFG----EPYPISGTHGLGLGD 174 (456)
T ss_dssp HTTCCSC-EEEEEECC-----------------CCSG-GGSSS----SEEECCTTTCTTHHH
T ss_pred HHHcCCC-EEEEEECccchhhh--------hhHHHHH-HcCCC----ceEEeecccccchHH
Confidence 7666655 77999999986311 1111222 23332 457999999999998
No 148
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.54 E-value=1.2e-14 Score=147.38 Aligned_cols=106 Identities=15% Similarity=0.167 Sum_probs=69.3
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh-CCCeEEEEEecCCCCCchHH
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL-GVNQLGVVINKLDTVSWSQD 329 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~-~i~~iIVviNKiDl~~~~~~ 329 (902)
..+.||||||+++|...+...++.+|++|+|+|+++... |. ......+..+... ...++|+|+||+|+.+....
T Consensus 71 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~--~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 145 (194)
T 3reg_A 71 FILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTS---FD--NISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSD 145 (194)
T ss_dssp EEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHH---HH--HHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTT
T ss_pred EEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHH---HH--HHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCC
Confidence 457999999999998888888899999999999987521 10 0012223333333 23468899999998642110
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 330 RFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 330 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
....++...+.+..++. +++++||++|.|+.+
T Consensus 146 --~~~~~~~~~~~~~~~~~----~~~~~Sa~~~~gi~~ 177 (194)
T 3reg_A 146 --DVTKQEGDDLCQKLGCV----AYIEASSVAKIGLNE 177 (194)
T ss_dssp --CCCHHHHHHHHHHHTCS----CEEECBTTTTBSHHH
T ss_pred --cccHHHHHHHHHhcCCC----EEEEeecCCCCCHHH
Confidence 00112233334444541 389999999999998
No 149
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.54 E-value=1.7e-14 Score=145.31 Aligned_cols=100 Identities=15% Similarity=0.175 Sum_probs=58.1
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh----CCCeEEEEEecCCCCCc
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL----GVNQLGVVINKLDTVSW 326 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~----~i~~iIVviNKiDl~~~ 326 (902)
..+.||||||+.++...+...+..+|++|+|+|+++... + ......+..+... ++ ++++|+||+|+.+.
T Consensus 69 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~-p~ilv~nK~Dl~~~ 141 (190)
T 3con_A 69 CLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKS---F---ADINLYREQIKRVKDSDDV-PMVLVGNKCDLPTR 141 (190)
T ss_dssp EEEEEEECCC-----------CTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHHTCSCC-CEEEEEECTTCSCC
T ss_pred EEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHH---H---HHHHHHHHHHHHHhCCCCC-eEEEEEECCcCCcc
Confidence 468999999999998888888999999999999987521 0 1112222223322 44 47799999998752
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 327 SQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 327 ~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.. .. +++..+.+..++ +++++||++|.|+.+
T Consensus 142 ~~-~~----~~~~~~~~~~~~-----~~~~~Sa~~~~gi~~ 172 (190)
T 3con_A 142 TV-DT----KQAHELAKSYGI-----PFIETSAKTRQGVED 172 (190)
T ss_dssp CS-CH----HHHHHHHHHHTC-----CEEECCTTTCTTHHH
T ss_pred cC-CH----HHHHHHHHHcCC-----eEEEEeCCCCCCHHH
Confidence 11 11 122223333443 789999999999998
No 150
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.54 E-value=4.8e-14 Score=142.79 Aligned_cols=101 Identities=15% Similarity=0.151 Sum_probs=68.5
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh-----CCCeEEEEEecCCCC
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL-----GVNQLGVVINKLDTV 324 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~-----~i~~iIVviNKiDl~ 324 (902)
...+.||||||+.++...+...+..+|++|+|+|+++... + ......+..+... ++ ++|+|+||+|+.
T Consensus 55 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~~-piilv~nK~Dl~ 127 (199)
T 2gf0_A 55 VCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQS---L---EELGPIYKLIVQIKGSVEDI-PVMLVGNKCDET 127 (199)
T ss_dssp EEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHH---H---HTTHHHHHHHHHHHSCGGGS-CEEEEEECTTCS
T ss_pred EEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHH---H---HHHHHHHHHHHHHhcCCCCC-CEEEEEECccCC
Confidence 3578999999999999989999999999999999986421 1 1122223223321 33 477999999997
Q ss_pred CchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 325 SWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 325 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+.... .. +...+....++ +++++||++|.|+.+
T Consensus 128 ~~~~~-~~----~~~~~~~~~~~-----~~~~~Sa~~~~gi~~ 160 (199)
T 2gf0_A 128 QREVD-TR----EAQAVAQEWKC-----AFMETSAKMNYNVKE 160 (199)
T ss_dssp SCSSC-HH----HHHHHHHHHTC-----EEEECBTTTTBSHHH
T ss_pred ccccC-HH----HHHHHHHHhCC-----eEEEEecCCCCCHHH
Confidence 52111 11 11222333333 789999999999998
No 151
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.54 E-value=1.1e-14 Score=148.82 Aligned_cols=104 Identities=13% Similarity=0.032 Sum_probs=67.7
Q ss_pred ECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHH----hCCCeEEEEEecCCC
Q psy15197 248 TKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRS----LGVNQLGVVINKLDT 323 (902)
Q Consensus 248 ~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~----~~i~~iIVviNKiDl 323 (902)
.....+.||||||+.++...+...++.+|++|+|+|+++... | ......+..+.. .++ ++|+|+||+|+
T Consensus 69 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~-piilv~nK~Dl 141 (201)
T 3oes_A 69 KDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHS---F---QVIESLYQKLHEGHGKTRV-PVVLVGNKADL 141 (201)
T ss_dssp --CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHH---H---HHHHHHHHHHHC-----CC-CEEEEEECTTC
T ss_pred CEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHH---H---HHHHHHHHHHHHhcCCCCC-CEEEEEECccC
Confidence 346789999999999988777888899999999999987521 0 011222222221 244 47799999998
Q ss_pred CCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 324 VSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 324 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.+....... +...+.+..++ +++++||++|.|+.+
T Consensus 142 ~~~~~v~~~----~~~~~~~~~~~-----~~~~~Sa~~~~~v~~ 176 (201)
T 3oes_A 142 SPEREVQAV----EGKKLAESWGA-----TFMESSARENQLTQG 176 (201)
T ss_dssp GGGCCSCHH----HHHHHHHHHTC-----EEEECCTTCHHHHHH
T ss_pred ccccccCHH----HHHHHHHHhCC-----eEEEEeCCCCCCHHH
Confidence 742211111 11222333343 899999999999998
No 152
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.53 E-value=8e-15 Score=143.92 Aligned_cols=102 Identities=17% Similarity=0.048 Sum_probs=54.7
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh----CCCeEEEEEecCCCCC
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL----GVNQLGVVINKLDTVS 325 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~----~i~~iIVviNKiDl~~ 325 (902)
...+.++||||+.++.......+..+|++|+|+|+++... | ......+..+... ++ ++++|+||+|+.+
T Consensus 48 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~-p~ilv~nK~Dl~~ 120 (166)
T 3q72_A 48 EASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGS---F---EKASELRVQLRRARQTDDV-PIILVGNKSDLVR 120 (166)
T ss_dssp EEEEEEEECC---------------CCEEEEEEETTCHHH---H---HHHHHHHHHHHHCC---CC-CEEEEEECTTCCS
T ss_pred EEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCC-CEEEEEecccccc
Confidence 3578899999999998888889999999999999986521 1 1122222333322 44 4779999999975
Q ss_pred chHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 326 WSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 326 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
......++ ...+....+ ++++++||++|.|+++
T Consensus 121 ~~~~~~~~----~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 153 (166)
T 3q72_A 121 SREVSVDE----GRACAVVFD-----CKFIETSAALHHNVQA 153 (166)
T ss_dssp SCCSCHHH----HHHHHHHTT-----CEEEECBGGGTBSHHH
T ss_pred ccccCHHH----HHHHHHHhC-----CcEEEeccCCCCCHHH
Confidence 22111111 122223333 3899999999999998
No 153
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.53 E-value=2.3e-14 Score=145.05 Aligned_cols=105 Identities=22% Similarity=0.279 Sum_probs=69.8
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhH-HHHHHHHHh--CCCeEEEEEecCCCCCch
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTR-EHALLVRSL--GVNQLGVVINKLDTVSWS 327 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~-~~l~~l~~~--~i~~iIVviNKiDl~~~~ 327 (902)
..+.||||||+.+|...+...++.+|++|+|+|+++... | .... ..+..+... ++ ++|+|+||+|+.+..
T Consensus 66 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~-piilv~nK~Dl~~~~ 138 (194)
T 2atx_A 66 YLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPAS---F---QNVKEEWVPELKEYAPNV-PFLLIGTQIDLRDDP 138 (194)
T ss_dssp EEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHH---H---HHHHHTHHHHHHHHSTTC-CEEEEEECTTSTTCH
T ss_pred EEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHHhCCCC-CEEEEEEChhhcccc
Confidence 578999999999988877788889999999999987521 0 0111 233344443 44 477999999997532
Q ss_pred HHHHHH--------H-HHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 328 QDRFQE--------I-VTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 328 ~~~~~~--------i-~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
. .... + .++...+.+..++ .+++++||++|.||++
T Consensus 139 ~-~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~g~gi~~ 182 (194)
T 2atx_A 139 K-TLARLNDMKEKPICVEQGQKLAKEIGA----CCYVECSALTQKGLKT 182 (194)
T ss_dssp H-HHHHHTTTTCCCCCHHHHHHHHHHHTC----SCEEECCTTTCTTHHH
T ss_pred c-chhhcccccCcccCHHHHHHHHHHcCC----cEEEEeeCCCCCCHHH
Confidence 1 1000 0 1223333444443 2789999999999998
No 154
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.53 E-value=4.8e-14 Score=145.83 Aligned_cols=105 Identities=19% Similarity=0.156 Sum_probs=56.0
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhH-HHHHHHHHh-CCCeEEEEEecCCCCCchH
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTR-EHALLVRSL-GVNQLGVVINKLDTVSWSQ 328 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~-~~l~~l~~~-~i~~iIVviNKiDl~~~~~ 328 (902)
..+.||||||+.+|...+...+..+|++|+|+|+++... | .... ..+..+... ...++|+|+||+|+.....
T Consensus 82 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 155 (214)
T 2j1l_A 82 VHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNS---F---DNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKS 155 (214)
T ss_dssp EEEEEEEC---------------CEEEEEEEEETTCHHH---H---HHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHH
T ss_pred EEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHH---H---HHHHHHHHHHHHHhCCCCCEEEEEEChhhhccch
Confidence 478999999999998888888999999999999987521 1 0111 223333332 2234779999999975321
Q ss_pred HHHHHH----------HHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 329 DRFQEI----------VTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 329 ~~~~~i----------~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
..+. .++...+.+..+. .+++++||++|.||.+
T Consensus 156 --~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~SA~~g~gi~e 198 (214)
T 2j1l_A 156 --LVNKLRRNGLEPVTYHRGQEMARSVGA----VAYLECSARLHDNVHA 198 (214)
T ss_dssp --HHHHHHHTTCCCCCHHHHHHHHHHTTC----SEEEECBTTTTBSHHH
T ss_pred --hhhhhcccccCcccHHHHHHHHHhcCC----CEEEEecCCCCCCHHH
Confidence 1111 1223333444443 3899999999999998
No 155
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.52 E-value=6.3e-14 Score=153.83 Aligned_cols=127 Identities=21% Similarity=0.220 Sum_probs=78.7
Q ss_pred CCeEEeeeEEEEEE-CCeEEEEEeCCCccch-----HHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHH
Q psy15197 235 RGITMDVGQSQFET-KTKYITLLDAPGHKDF-----IPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRS 308 (902)
Q Consensus 235 rGiTid~~~~~~~~-~~~~i~lIDTPG~~df-----~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~ 308 (902)
.|.|++.....+.+ ++..+.||||||+++| ...+...++.+|++|+|+|+++.... +........+..+..
T Consensus 35 ~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~---~~l~~~~~~l~~l~~ 111 (307)
T 3r7w_A 35 LGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVL---KDIEIFAKALKQLRK 111 (307)
T ss_dssp CCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHH---HHHHHHHHHHHHHHH
T ss_pred cCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhH---HHHHHHHHHHHHHHH
Confidence 34455555555554 5789999999999988 44566677899999999999976321 000001111222222
Q ss_pred h-CCCeEEEEEecCCCCCchH--HHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 309 L-GVNQLGVVINKLDTVSWSQ--DRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 309 ~-~i~~iIVviNKiDl~~~~~--~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
. ...++++|+||+|+.+.+. +......+++..+.+..++. .++++++||++ .|+.+
T Consensus 112 ~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~--~~~~~~tSa~~-~~i~e 170 (307)
T 3r7w_A 112 YSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFP--NLIGFPTSIWD-ESLYK 170 (307)
T ss_dssp HCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCC--SCEEEECCTTS-SHHHH
T ss_pred hCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCC--CeEEEEeeecC-ChHHH
Confidence 1 1245789999999975211 11113335566666666531 35899999999 66665
No 156
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.52 E-value=6.4e-15 Score=147.11 Aligned_cols=101 Identities=15% Similarity=0.082 Sum_probs=65.4
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHH-H---HhCCCeEEEEEecCCCCCc
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLV-R---SLGVNQLGVVINKLDTVSW 326 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l-~---~~~i~~iIVviNKiDl~~~ 326 (902)
..+.||||||+.+|...+...++.+|++|+|+|+++... ++ .....+..+ . ..++ ++|+|+||+|+.+.
T Consensus 54 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~-p~ilv~nK~Dl~~~ 126 (181)
T 3t5g_A 54 YHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKS---FE---VIKVIHGKLLDMVGKVQI-PIMLVGNKKDLHME 126 (181)
T ss_dssp EEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHH---HH---HHHHHHHHHHHHC----C-CEEEEEECTTCTTT
T ss_pred EEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCC-CEEEEEECccchhc
Confidence 578999999999987667777889999999999987421 10 111122122 2 2244 47799999998642
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 327 SQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 327 ~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
..... ++...+.+..++ +++++||++|.|+.+
T Consensus 127 ~~~~~----~~~~~~~~~~~~-----~~~~~Sa~~~~~v~~ 158 (181)
T 3t5g_A 127 RVISY----EEGKALAESWNA-----AFLESSAKENQTAVD 158 (181)
T ss_dssp CCSCH----HHHHHHHHHTTC-----EEEECCTTSHHHHHH
T ss_pred ceecH----HHHHHHHHHhCC-----cEEEEecCCCCCHHH
Confidence 11111 122233344443 899999999999998
No 157
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.52 E-value=6.1e-14 Score=151.24 Aligned_cols=114 Identities=14% Similarity=0.180 Sum_probs=62.5
Q ss_pred EeeeEEEEEECC--eEEEEEeCCCccc-------hHHHH-------HHHHHH-------------cCEEEEEEECCCCcc
Q psy15197 239 MDVGQSQFETKT--KYITLLDAPGHKD-------FIPNM-------ITGATQ-------------ADVALLVVDATRGEF 289 (902)
Q Consensus 239 id~~~~~~~~~~--~~i~lIDTPG~~d-------f~~~~-------~~~l~~-------------aD~aIlVVDa~~g~~ 289 (902)
++.....+.+++ ..++||||||+.+ +...+ ..++.. +|++|++|+.+...
T Consensus 51 ~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~- 129 (274)
T 3t5d_A 51 VEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHG- 129 (274)
T ss_dssp CEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSS-
T ss_pred EEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCC-
Confidence 333333444444 4899999999843 22222 344444 78999999776521
Q ss_pred ccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 290 ETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 290 E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
....+.+.+..+.. ++| +|+|+||+|+.. ........+.+...++..++ +++.+||+++.|+.+
T Consensus 130 -----~~~~d~~~l~~l~~-~~p-vi~V~nK~D~~~--~~e~~~~~~~i~~~l~~~~i-----~v~~~sa~~~~~~~~ 193 (274)
T 3t5d_A 130 -----LKPLDIEFMKRLHE-KVN-IIPLIAKADTLT--PEECQQFKKQIMKEIQEHKI-----KIYEFPETDDEEENK 193 (274)
T ss_dssp -----CCHHHHHHHHHHTT-TSC-EEEEESSGGGSC--HHHHHHHHHHHHHHHHHTTC-----CCCCC----------
T ss_pred -----CCHHHHHHHHHHhc-cCC-EEEEEeccCCCC--HHHHHHHHHHHHHHHHHcCC-----eEEcCCCCCChhHHH
Confidence 22455555555554 544 779999999875 34445555556555655444 788999999999998
No 158
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.51 E-value=5.7e-14 Score=143.56 Aligned_cols=106 Identities=18% Similarity=0.194 Sum_probs=69.8
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh--CCCeEEEEEecCCCCCchH
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL--GVNQLGVVINKLDTVSWSQ 328 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~--~i~~iIVviNKiDl~~~~~ 328 (902)
..+.||||||+.+|...+...++.+|++|+|+|+++... + .......+..+... ++| +++|+||+|+.+...
T Consensus 73 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~--~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~ 146 (201)
T 2gco_A 73 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDS---L--ENIPEKWTPEVKHFCPNVP-IILVGNKKDLRQDEH 146 (201)
T ss_dssp EEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHH---H--HHHHHTHHHHHHHHSTTCC-EEEEEECGGGTTCHH
T ss_pred EEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHH---H--HHHHHHHHHHHHHhCCCCC-EEEEEecHHhhcCcc
Confidence 478999999999988777778889999999999987521 0 01112233444443 544 779999999975321
Q ss_pred HHHHHH---------HHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 329 DRFQEI---------VTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 329 ~~~~~i---------~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
..+.+ .++...+.+..+. .+++++||++|.||.+
T Consensus 147 -~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~SA~~g~gi~~ 189 (201)
T 2gco_A 147 -TRRELAKMKQEPVRSEEGRDMANRISA----FGYLECSAKTKEGVRE 189 (201)
T ss_dssp -HHHHHHTTTCCCCCHHHHHHHHHHTTC----SEEEECCTTTCTTHHH
T ss_pred -chhhhcccccCcCCHHHHHHHHHhCCC----cEEEEeeCCCCCCHHH
Confidence 11111 1122333444433 2789999999999998
No 159
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.51 E-value=6.6e-14 Score=142.20 Aligned_cols=101 Identities=25% Similarity=0.228 Sum_probs=66.0
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHH----hCCCeEEEEEecCCCCC
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRS----LGVNQLGVVINKLDTVS 325 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~----~~i~~iIVviNKiDl~~ 325 (902)
...+.||||||+.+ ...+...+..+|++|+|+|+++... ++ .....+..+.. .++ ++|+|+||+|+.+
T Consensus 75 ~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s---~~---~~~~~~~~i~~~~~~~~~-piilv~NK~Dl~~ 146 (196)
T 2atv_A 75 VVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGS---FE---EVLPLKNILDEIKKPKNV-TLILVGNKADLDH 146 (196)
T ss_dssp EEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHH---HH---THHHHHHHHHHHHTTSCC-CEEEEEECGGGGG
T ss_pred EEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhhCCCCC-cEEEEEECccccc
Confidence 35799999999998 6667788899999999999987421 11 11222222222 244 4779999999864
Q ss_pred chHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCC-CCCC
Q psy15197 326 WSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGE-NLTT 367 (902)
Q Consensus 326 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~-gI~~ 367 (902)
......++ ...+.+..++ +++++||++|. |+.+
T Consensus 147 ~~~v~~~~----~~~~~~~~~~-----~~~~~Sa~~g~~gi~~ 180 (196)
T 2atv_A 147 SRQVSTEE----GEKLATELAC-----AFYECSACTGEGNITE 180 (196)
T ss_dssp GCCSCHHH----HHHHHHHHTS-----EEEECCTTTCTTCHHH
T ss_pred ccccCHHH----HHHHHHHhCC-----eEEEECCCcCCcCHHH
Confidence 21111111 2222333333 89999999999 9998
No 160
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.51 E-value=1.4e-14 Score=147.68 Aligned_cols=103 Identities=19% Similarity=0.192 Sum_probs=61.5
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh-----CCCeEEEEEecCCCC
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL-----GVNQLGVVINKLDTV 324 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~-----~i~~iIVviNKiDl~ 324 (902)
...+.||||||+.++...+...+..+|++|+|+|+++... | ......+..+... ...++|+|+||+|+.
T Consensus 72 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 145 (208)
T 2yc2_C 72 SVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMES---F---ESCKAWFELLKSARPDRERPLRAVLVANKTDLP 145 (208)
T ss_dssp EEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHH---H---HHHHHHHHHHHHHCSCTTSCCEEEEEEECC---
T ss_pred EEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHH---H---HHHHHHHHHHHHhhcccccCCcEEEEEECcccc
Confidence 4589999999999998888888889999999999987621 0 1222333333332 234578999999986
Q ss_pred C-chHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCcc-CCCCCC
Q psy15197 325 S-WSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLT-GENLTT 367 (902)
Q Consensus 325 ~-~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~-G~gI~~ 367 (902)
+ ..... .+++..+.+..+ ++++++||++ |.|+.+
T Consensus 146 ~~~~~v~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~gi~~ 181 (208)
T 2yc2_C 146 PQRHQVR----LDMAQDWATTNT-----LDFFDVSANPPGKDADA 181 (208)
T ss_dssp ----CCC----HHHHHHHHHHTT-----CEEEECCC-------CH
T ss_pred hhhccCC----HHHHHHHHHHcC-----CEEEEeccCCCCcCHHH
Confidence 4 11110 122333444444 3899999999 999998
No 161
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.51 E-value=2.1e-14 Score=149.77 Aligned_cols=103 Identities=22% Similarity=0.171 Sum_probs=70.4
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh--CCCeEEEEEecCCCCCch
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL--GVNQLGVVINKLDTVSWS 327 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~--~i~~iIVviNKiDl~~~~ 327 (902)
...+.||||+|+++|...+..+++.+|++|+|+|.++.. +|+ .....+..+... .-.++|+|.||+|+.+..
T Consensus 61 ~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~---Sf~---~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r 134 (216)
T 4dkx_A 61 TIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVN---SFQ---QTTKWIDDVRTERGSDVIIMLVGNKTDLADKR 134 (216)
T ss_dssp EEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHH---HHH---THHHHHHHHHHHHTTSSEEEEEEECTTCGGGC
T ss_pred EEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhH---HHH---HHHHHHHHHHHhcCCCCeEEEEeeccchHhcC
Confidence 357889999999999999999999999999999998752 221 122223323222 224578999999986421
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 328 QDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 328 ~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.... ++...+.+..++ +++.+||++|.||++
T Consensus 135 ~V~~----~e~~~~a~~~~~-----~~~e~SAktg~nV~e 165 (216)
T 4dkx_A 135 QVSI----EEGERKAKELNV-----MFIETSAKAGYNVKQ 165 (216)
T ss_dssp CSCH----HHHHHHHHHHTC-----EEEEEBTTTTBSHHH
T ss_pred cccH----HHHhhHHHHhCC-----eeEEEeCCCCcCHHH
Confidence 1111 122333444444 789999999999998
No 162
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.51 E-value=2e-14 Score=149.54 Aligned_cols=107 Identities=17% Similarity=0.181 Sum_probs=68.5
Q ss_pred EEECC--eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh--CCCeEEEEEecC
Q psy15197 246 FETKT--KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL--GVNQLGVVINKL 321 (902)
Q Consensus 246 ~~~~~--~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~--~i~~iIVviNKi 321 (902)
+.+++ ..+.||||||+.+|...+...++.+|++|+|+|+++... | ......+..+... ...++|||+||+
T Consensus 55 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s---~---~~~~~~l~~i~~~~~~~~piilv~nK~ 128 (223)
T 3cpj_B 55 LEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSS---Y---ENCNHWLSELRENADDNVAVGLIGNKS 128 (223)
T ss_dssp EEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHH---H---HHHHHHHHHHHHHCC--CEEEEEECCG
T ss_pred EEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHH---H---HHHHHHHHHHHHhCCCCCeEEEEEECc
Confidence 44444 589999999999988778888899999999999987521 0 1122223333333 124577999999
Q ss_pred CCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 322 DTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 322 Dl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
|+.+......+ +...+.+..+ ++++++||++|.||.+
T Consensus 129 Dl~~~~~v~~~----~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 165 (223)
T 3cpj_B 129 DLAHLRAVPTE----ESKTFAQENQ-----LLFTETSALNSENVDK 165 (223)
T ss_dssp GGGGGCCSCHH----HHHHHHHHTT-----CEEEECCCC-CCCHHH
T ss_pred ccccccccCHH----HHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 98642111111 1222333333 3899999999999998
No 163
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.51 E-value=3.4e-14 Score=166.03 Aligned_cols=113 Identities=19% Similarity=0.169 Sum_probs=73.8
Q ss_pred EEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh--CCCeEEEEEecC
Q psy15197 244 SQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL--GVNQLGVVINKL 321 (902)
Q Consensus 244 ~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~--~i~~iIVviNKi 321 (902)
..+.+++..+.||||||+++|...+..++..+|++|+|+|+++... | .........++... ...++|||+||+
T Consensus 359 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s---~--~~~~~~~~~~~~~~~~~~~p~ilv~NK~ 433 (497)
T 3lvq_E 359 ETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDR---I--DEARQELHRIINDREMRDAIILIFANKQ 433 (497)
T ss_dssp EEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGG---H--HHHHHHHHHHHTSGGGTTCEEEEEEECC
T ss_pred EEEEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhH---H--HHHHHHHHHHhhhhhcCCCcEEEEEECC
Confidence 3466678899999999999998888888999999999999987521 1 01111111222211 224578999999
Q ss_pred CCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 322 DTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 322 Dl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
|+.+... ..++.+. +.........++++++||++|.||++
T Consensus 434 Dl~~~~~--~~~~~~~----~~~~~~~~~~~~~~~~SA~~g~gi~~ 473 (497)
T 3lvq_E 434 DLPDAMK--PHEIQEK----LGLTRIRDRNWYVQPSCATSGDGLYE 473 (497)
T ss_dssp SSSSCCC--HHHHHHH----TTCTTCCSSCEEEEECBTTTTBTHHH
T ss_pred CCCcCCC--HHHHHHH----hchhhhhcCCeEEEEEECCCCCCHHH
Confidence 9975211 1222222 21111122346899999999999998
No 164
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.50 E-value=8e-14 Score=140.80 Aligned_cols=100 Identities=12% Similarity=0.037 Sum_probs=62.4
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh---CCCeEEEEEecCCCCCch
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL---GVNQLGVVINKLDTVSWS 327 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~---~i~~iIVviNKiDl~~~~ 327 (902)
..+.||||||+++|. .++.+|++|+|+|+++... | ......+..+... ...++|+|.||+|+...+
T Consensus 67 ~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 135 (184)
T 3ihw_A 67 YLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEIS---F---QTVYNYFLRLCSFRNASEVPMVLVGTQDAISAAN 135 (184)
T ss_dssp EEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHHH---H---HHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTB
T ss_pred EEEEEEECCCChhhh-----eecCCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCCCEEEEEECccccccc
Confidence 467889999999886 7788999999999987521 1 0112233333332 123477999999985211
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 328 QDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 328 ~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.... ..++...+.+..+ .++++.+||++|.|+.+
T Consensus 136 ~~~v--~~~~~~~~~~~~~----~~~~~e~Sa~~~~gv~~ 169 (184)
T 3ihw_A 136 PRVI--DDSRARKLSTDLK----RCTYYETCATYGLNVER 169 (184)
T ss_dssp CCCS--CHHHHHHHHHHTT----TCEEEEEBTTTTBTHHH
T ss_pred cccc--CHHHHHHHHHHcC----CCeEEEecCCCCCCHHH
Confidence 1000 0112223333333 13889999999999998
No 165
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.50 E-value=7.1e-14 Score=143.51 Aligned_cols=106 Identities=20% Similarity=0.193 Sum_probs=68.4
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh--CCCeEEEEEecCCCCCchH
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL--GVNQLGVVINKLDTVSWSQ 328 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~--~i~~iIVviNKiDl~~~~~ 328 (902)
..+.||||||+.++...+...+..+|++|+|+|++.... ........+..+... ++| +|+|+||+|+.+...
T Consensus 73 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s-----~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~ 146 (207)
T 2fv8_A 73 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDS-----LENIPEKWVPEVKHFCPNVP-IILVANKKDLRSDEH 146 (207)
T ss_dssp EEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHH-----HHHHHHTHHHHHHHHSTTCC-EEEEEECGGGGGCHH
T ss_pred EEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHH-----HHHHHHHHHHHHHHhCCCCC-EEEEEEchhhhcccc
Confidence 578999999999988777778889999999999987521 001112233344443 444 779999999975211
Q ss_pred HHHHHH---------HHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 329 DRFQEI---------VTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 329 ~~~~~i---------~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
..+.+ .++...+....+. .+++++||++|.|+++
T Consensus 147 -~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~SA~~g~gi~e 189 (207)
T 2fv8_A 147 -VRTELARMKQEPVRTDDGRAMAVRIQA----YDYLECSAKTKEGVRE 189 (207)
T ss_dssp -HHHHHHHTTCCCCCHHHHHHHHHHTTC----SEEEECCTTTCTTHHH
T ss_pred -chhhhhhcccCCCCHHHHHHHHHhcCC----CEEEEeeCCCCCCHHH
Confidence 11111 0112222233332 2789999999999998
No 166
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.25 E-value=1.7e-15 Score=154.97 Aligned_cols=108 Identities=25% Similarity=0.272 Sum_probs=68.1
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh--CCCeEEEEEecCCCCCch
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL--GVNQLGVVINKLDTVSWS 327 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~--~i~~iIVviNKiDl~~~~ 327 (902)
...+.||||||+.+|...+...++.+|++|+|+|+++... +. ......+..+... ++ ++|+|+||+|+.+..
T Consensus 77 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s---~~--~~~~~~~~~l~~~~~~~-piilv~NK~Dl~~~~ 150 (204)
T 3th5_A 77 PVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPAS---FE--NVRAKWYPEVRHHCPNT-PIILVGTKLDLRDDK 150 (204)
Confidence 4567799999999999888889999999999999987632 11 1111222233322 43 477999999997421
Q ss_pred HH--HHH-----HH-HHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 328 QD--RFQ-----EI-VTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 328 ~~--~~~-----~i-~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.. .+. .+ .++...+.+..+. .+++++||++|.|+++
T Consensus 151 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~vSA~~g~gi~~ 194 (204)
T 3th5_A 151 DTIEKLKEKKLTPITYPQGLAMAKEIGA----VKYLECSALTQRGLKT 194 (204)
Confidence 10 000 00 1112222222221 2789999999999998
No 167
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.50 E-value=6.6e-14 Score=142.87 Aligned_cols=102 Identities=17% Similarity=0.023 Sum_probs=64.8
Q ss_pred eEEEEEeCCCccchHH-HHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh---CCCeEEEEEecCCCCCc
Q psy15197 251 KYITLLDAPGHKDFIP-NMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL---GVNQLGVVINKLDTVSW 326 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~-~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~---~i~~iIVviNKiDl~~~ 326 (902)
..+.||||||+.++.. .....++.+|++|+|+|+++... |+ .....+..+... ...++|+|.||+|+.+.
T Consensus 72 ~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 145 (195)
T 3cbq_A 72 VTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRS---FS---KVPETLLRLRAGRPHHDLPVILVGNKSDLARS 145 (195)
T ss_dssp EEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHH---HH---THHHHHHHHHHHSTTSCCCEEEEEECTTCTTT
T ss_pred EEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCCEEEEeechhcccc
Confidence 4678899999988654 45566789999999999987521 11 122223233321 12347799999999742
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 327 SQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 327 ~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.....++ ...+.+..+ ++++++||++|.|+++
T Consensus 146 ~~v~~~~----~~~~a~~~~-----~~~~e~Sa~~~~~v~~ 177 (195)
T 3cbq_A 146 REVSLEE----GRHLAGTLS-----CKHIETSAALHHNTRE 177 (195)
T ss_dssp CCSCHHH----HHHHHHHTT-----CEEEEEBTTTTBSHHH
T ss_pred CCcCHHH----HHHHHHHhC-----CEEEEEcCCCCCCHHH
Confidence 1111111 222233333 3789999999999998
No 168
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.49 E-value=4.3e-14 Score=145.27 Aligned_cols=105 Identities=21% Similarity=0.233 Sum_probs=67.7
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhH-HHHHHHHHh--CCCeEEEEEecCCCCCch
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTR-EHALLVRSL--GVNQLGVVINKLDTVSWS 327 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~-~~l~~l~~~--~i~~iIVviNKiDl~~~~ 327 (902)
..+.||||||+++|...+..+++.+|++|+|+|+++... | .... ..+..+... ++ ++|+|+||+|+.+..
T Consensus 57 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~---~~~~~~~~~~~~~~~~~~-piilv~nK~Dl~~~~ 129 (212)
T 2j0v_A 57 VNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKAS---Y---ENVLKKWMPELRRFAPNV-PIVLVGTKLDLRDDK 129 (212)
T ss_dssp EEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHH---H---HHHHHTHHHHHHHHCTTC-CEEEEEECHHHHTCH
T ss_pred EEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHHhCCCC-CEEEEEeCHHhhhCc
Confidence 589999999999988777778899999999999987521 0 0111 233334333 44 477999999986521
Q ss_pred HHHHHH-----HHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 328 QDRFQE-----IVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 328 ~~~~~~-----i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.. ... ..++...+.+..+. .+++++||++|.|+.+
T Consensus 130 ~~-~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~g~gi~~ 169 (212)
T 2j0v_A 130 GY-LADHTNVITSTQGEELRKQIGA----AAYIECSSKTQQNVKA 169 (212)
T ss_dssp HH-HHTCSSCCCHHHHHHHHHHHTC----SEEEECCTTTCTTHHH
T ss_pred cc-cccccCCCCHHHHHHHHHHcCC----ceEEEccCCCCCCHHH
Confidence 10 000 11223333444443 3789999999999998
No 169
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.49 E-value=9.7e-15 Score=145.55 Aligned_cols=108 Identities=19% Similarity=0.149 Sum_probs=66.6
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhH-HHHHHHHHh-CCCeEEEEEecCCCCCch
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTR-EHALLVRSL-GVNQLGVVINKLDTVSWS 327 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~-~~l~~l~~~-~i~~iIVviNKiDl~~~~ 327 (902)
...+.||||||+.+|...+...++.+|++|+|+|+++... + .... ..+..+... ...++++|+||+|+.+..
T Consensus 55 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 128 (182)
T 3bwd_D 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS---Y---ENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDK 128 (182)
T ss_dssp ---CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHH---H---HHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCH
T ss_pred EEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHHhCCCCCEEEEEechhhhcCc
Confidence 4567899999999988888888899999999999987521 0 0111 233333332 223477999999986522
Q ss_pred HHHHH------HHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 328 QDRFQ------EIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 328 ~~~~~------~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
..... ...++...+.+..+. .+++++||++|.|+++
T Consensus 129 ~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~~~gi~~ 170 (182)
T 3bwd_D 129 QFFIDHPGAVPITTVQGEELKKLIGA----PAYIECSSKSQENVKG 170 (182)
T ss_dssp HHHHHC--CCCCCHHHHHHHHHHHTC----SEEEECCTTTCTTHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHcCC----CEEEEEECCCCCCHHH
Confidence 11000 011222333334443 3789999999999998
No 170
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.48 E-value=4.3e-14 Score=143.86 Aligned_cols=106 Identities=19% Similarity=0.168 Sum_probs=67.3
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhH-HHHHHHHHh-CCCeEEEEEecCCCCCchH
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTR-EHALLVRSL-GVNQLGVVINKLDTVSWSQ 328 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~-~~l~~l~~~-~i~~iIVviNKiDl~~~~~ 328 (902)
..+.||||||+.+|...+...+..+|++|+|+|+++... | .... ..+..+... ...++|+|+||+|+.+...
T Consensus 68 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 141 (201)
T 2q3h_A 68 VRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSS---F---QNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVK 141 (201)
T ss_dssp EEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHH---H---HHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHH
T ss_pred EEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHH---H---HHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchh
Confidence 467799999999887777777889999999999987521 0 0111 222333332 2234779999999874211
Q ss_pred HHHHH---------HHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 329 DRFQE---------IVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 329 ~~~~~---------i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.... ..++...+.+..+. .+++++||++|.||.+
T Consensus 142 -~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~g~gi~~ 184 (201)
T 2q3h_A 142 -VLIELDKCKEKPVPEEAAKLLAEEIKA----ASYIECSALTQKNLKE 184 (201)
T ss_dssp -HHHHHHTTTCCCCCHHHHHHHHHHHTC----SEEEECCTTTCTTHHH
T ss_pred -hhhhhcccccccCCHHHHHHHHHhcCC----cEEEEEecCCCCCHHH
Confidence 0000 01122333333332 3789999999999998
No 171
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.47 E-value=1.2e-13 Score=142.93 Aligned_cols=110 Identities=17% Similarity=0.124 Sum_probs=71.2
Q ss_pred CCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh-CCCeEEEEEecCCCCCch
Q psy15197 249 KTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL-GVNQLGVVINKLDTVSWS 327 (902)
Q Consensus 249 ~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~-~i~~iIVviNKiDl~~~~ 327 (902)
....+.||||||+.+|...+...++.+|++|+|+|+++... |. ......+..+... ...++|+|+||+|+.+..
T Consensus 73 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~--~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~ 147 (214)
T 3q3j_B 73 QRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPET---VD--SALKKWRTEILDYCPSTRVLLIGCKTDLRTDL 147 (214)
T ss_dssp CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHH---HH--HHHTHHHHHHHHHCTTSEEEEEEECGGGGGCH
T ss_pred EEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHH---HH--HHHHHHHHHHHHhCCCCCEEEEEEChhhccch
Confidence 45689999999999988888888899999999999997621 10 0012233334433 234578999999986421
Q ss_pred HHHH--------HHHHHHHHHhhhhcCCCCCCceEecCCCccCCC-CCC
Q psy15197 328 QDRF--------QEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGEN-LTT 367 (902)
Q Consensus 328 ~~~~--------~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~g-I~~ 367 (902)
.... ....++...+.+..++ .+++++||++|.| |.+
T Consensus 148 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~SA~~g~g~v~~ 192 (214)
T 3q3j_B 148 STLMELSHQKQAPISYEQGCAIAKQLGA----EIYLEGSAFTSEKSIHS 192 (214)
T ss_dssp HHHHHHHHTTCCCCCHHHHHHHHHHHTC----SEEEECCTTTCHHHHHH
T ss_pred hhhhhhcccccCccCHHHHHHHHHHcCC----CEEEEeccCCCcccHHH
Confidence 0000 0001223334444443 2789999999998 998
No 172
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.47 E-value=6.8e-14 Score=141.45 Aligned_cols=101 Identities=16% Similarity=0.087 Sum_probs=62.3
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHH------hCCCeEEEEEecCCC
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRS------LGVNQLGVVINKLDT 323 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~------~~i~~iIVviNKiDl 323 (902)
...+.||||||+.+|.. +...++.+|++|+|+|+++... |+ .....+..+.. .++ ++|+|+||+|+
T Consensus 68 ~~~l~i~Dt~G~~~~~~-~~~~~~~~~~~ilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~~~-piilv~nK~Dl 139 (187)
T 3c5c_A 68 PVHLRVMDTADLDTPRN-CERYLNWAHAFLVVYSVDSRQS---FD---SSSSYLELLALHAKETQRSI-PALLLGNKLDM 139 (187)
T ss_dssp EEEEEEEECCC---CCC-THHHHTTCSEEEEEEETTCHHH---HH---HHHHHHHHHHHHHHHHCCCC-CEEEEEECGGG
T ss_pred EEEEEEEECCCCCcchh-HHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhhccCCCC-CEEEEEECcch
Confidence 35788999999988654 3567889999999999986521 11 11222222322 244 47799999998
Q ss_pred CCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCC-ccCCCCCC
Q psy15197 324 VSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSG-LTGENLTT 367 (902)
Q Consensus 324 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA-~~G~gI~~ 367 (902)
.+...... ++...+.+..++ +++++|| ++|.||.+
T Consensus 140 ~~~~~v~~----~~~~~~~~~~~~-----~~~e~Sa~~~g~gv~~ 175 (187)
T 3c5c_A 140 AQYRQVTK----AEGVALAGRFGC-----LFFEVSACLDFEHVQH 175 (187)
T ss_dssp GGGCSSCH----HHHHHHHHHHTC-----EEEECCSSSCSHHHHH
T ss_pred hhcCccCH----HHHHHHHHHcCC-----cEEEEeecCccccHHH
Confidence 64211111 122233334443 8999999 89999998
No 173
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.46 E-value=1.7e-13 Score=137.53 Aligned_cols=108 Identities=22% Similarity=0.277 Sum_probs=60.5
Q ss_pred EEEEEeCCC-----------ccchHHHHHHHHHH----cCEEEEEEECCCCccc-ccc---CCchhhHHHHHHHHHhCCC
Q psy15197 252 YITLLDAPG-----------HKDFIPNMITGATQ----ADVALLVVDATRGEFE-TGF---ESGGQTREHALLVRSLGVN 312 (902)
Q Consensus 252 ~i~lIDTPG-----------~~df~~~~~~~l~~----aD~aIlVVDa~~g~~E-~~~---~~~~qt~~~l~~l~~~~i~ 312 (902)
.+.|||||| ++++...+...+.. +++++.|+|+.....- ..+ ....++.+....+...++|
T Consensus 45 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 124 (190)
T 2cxx_A 45 NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP 124 (190)
T ss_dssp TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCC
T ss_pred CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCc
Confidence 688999999 44555555555544 5677777776532000 000 0001122333444455655
Q ss_pred eEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCC--CCceEecCCCccCCCCCC
Q psy15197 313 QLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRD--SDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 313 ~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~--~~~~ii~iSA~~G~gI~~ 367 (902)
+++|+||+|+.....+..+++ .+.++... ...+++++||++|.|+.+
T Consensus 125 -iilv~nK~Dl~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 173 (190)
T 2cxx_A 125 -TIVAVNKLDKIKNVQEVINFL-------AEKFEVPLSEIDKVFIPISAKFGDNIER 173 (190)
T ss_dssp -EEEEEECGGGCSCHHHHHHHH-------HHHHTCCGGGHHHHEEECCTTTCTTHHH
T ss_pred -eEEEeehHhccCcHHHHHHHH-------HHHhhhhhhccCCcEEEEecCCCCCHHH
Confidence 779999999976332222222 22233210 013679999999999998
No 174
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.46 E-value=3.6e-13 Score=150.90 Aligned_cols=110 Identities=24% Similarity=0.298 Sum_probs=66.7
Q ss_pred EEEEEECCeEEEEEeCCCccch--------HHHHHHHH-HHcCEEEEEEECCCCccccccCCchhhHHHHHHHHH-hCCC
Q psy15197 243 QSQFETKTKYITLLDAPGHKDF--------IPNMITGA-TQADVALLVVDATRGEFETGFESGGQTREHALLVRS-LGVN 312 (902)
Q Consensus 243 ~~~~~~~~~~i~lIDTPG~~df--------~~~~~~~l-~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~-~~i~ 312 (902)
...+...+..+.+|||||+.++ ......++ ..+|++|+|+|++.+. +++...+ ...+..+.. .+..
T Consensus 206 ~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~---~~~~~~~-~~~~~~i~~~~~~~ 281 (357)
T 2e87_A 206 VGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHC---GFPLEEQ-IHLFEEVHGEFKDL 281 (357)
T ss_dssp EEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTT---SSCHHHH-HHHHHHHHHHTTTS
T ss_pred EEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccc---cCCHHHH-HHHHHHHHHhcCCC
Confidence 3445566788999999998652 11222233 3599999999987651 1111122 223333333 2134
Q ss_pred eEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 313 QLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 313 ~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
++|+|+||+|+... ....+ +...++..+ ++++++||++|+|+++
T Consensus 282 piilV~NK~Dl~~~--~~~~~----~~~~~~~~~-----~~~~~iSA~~g~gi~~ 325 (357)
T 2e87_A 282 PFLVVINKIDVADE--ENIKR----LEKFVKEKG-----LNPIKISALKGTGIDL 325 (357)
T ss_dssp CEEEEECCTTTCCH--HHHHH----HHHHHHHTT-----CCCEECBTTTTBTHHH
T ss_pred CEEEEEECcccCCh--HHHHH----HHHHHHhcC-----CCeEEEeCCCCcCHHH
Confidence 57799999999752 22222 222333333 3789999999999998
No 175
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.46 E-value=2.5e-15 Score=153.26 Aligned_cols=110 Identities=18% Similarity=0.176 Sum_probs=63.5
Q ss_pred EEEEEECC--eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhC--CCeEEEEE
Q psy15197 243 QSQFETKT--KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLG--VNQLGVVI 318 (902)
Q Consensus 243 ~~~~~~~~--~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~--i~~iIVvi 318 (902)
...+.+++ ..+.||||||+.++...+...++.+|++|+|+|+++... | ......+..+.... ..++|+|+
T Consensus 72 ~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p~ilv~ 145 (199)
T 3l0i_B 72 IRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES---F---NNVKQWLQEIDRYASENVNKLLVG 145 (199)
T ss_dssp EEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHH---H---HHHHHHHHHHHSCC-CCSEEEEC-
T ss_pred EEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhccCCCCEEEEE
Confidence 33445555 579999999999988777788899999999999997621 0 11122223333221 24577999
Q ss_pred ecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 319 NKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 319 NKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
||+|+.+...... ++...+.+..+ ++++++||++|.|+.+
T Consensus 146 nK~Dl~~~~~v~~----~~~~~~~~~~~-----~~~~~vSA~~g~gv~~ 185 (199)
T 3l0i_B 146 NKCDLTTKKVVDY----TTAKEFADSLG-----IPFLETSAKNATNVEQ 185 (199)
T ss_dssp CCSSCC--CCCCS----CC-CHHHHTTT-----CCBCCCCC---HHHHH
T ss_pred ECccCCccccCCH----HHHHHHHHHcC-----CeEEEEECCCCCCHHH
Confidence 9999864211000 11122233333 3789999999999998
No 176
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.46 E-value=7.1e-13 Score=141.95 Aligned_cols=84 Identities=12% Similarity=0.035 Sum_probs=53.6
Q ss_pred CeEEeeeEEEEEECCeEEEEEeCCCccchHH---HHHHHHH------HcCEEEEEEECCCCccccccCCchhhHHHHHHH
Q psy15197 236 GITMDVGQSQFETKTKYITLLDAPGHKDFIP---NMITGAT------QADVALLVVDATRGEFETGFESGGQTREHALLV 306 (902)
Q Consensus 236 GiTid~~~~~~~~~~~~i~lIDTPG~~df~~---~~~~~l~------~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l 306 (902)
++|++.....+.+++..++||||||+.+|.. .....+. .+|++|+|+|.+...+ .......+..+
T Consensus 69 ~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~------~~~~~~~~~~l 142 (262)
T 3def_A 69 AEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAV------DELDKQVVIAI 142 (262)
T ss_dssp C-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCC------CHHHHHHHHHH
T ss_pred CcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCC------CHHHHHHHHHH
Confidence 3455555566778899999999999987432 2222222 6899999988865422 12333444444
Q ss_pred HHh-C---CCeEEEEEecCCCCC
Q psy15197 307 RSL-G---VNQLGVVINKLDTVS 325 (902)
Q Consensus 307 ~~~-~---i~~iIVviNKiDl~~ 325 (902)
... + ..++|+|+||+|+..
T Consensus 143 ~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 143 TQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp HHHHCGGGGGGEEEEEECTTCCC
T ss_pred HHHhchhhhcCEEEEEeCcccCC
Confidence 443 2 135789999999864
No 177
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.45 E-value=8e-13 Score=148.41 Aligned_cols=124 Identities=20% Similarity=0.194 Sum_probs=74.6
Q ss_pred CCeEEeeeEEEEEECCeEEEEEeCCCccc-----h---HHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHH
Q psy15197 235 RGITMDVGQSQFETKTKYITLLDAPGHKD-----F---IPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLV 306 (902)
Q Consensus 235 rGiTid~~~~~~~~~~~~i~lIDTPG~~d-----f---~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l 306 (902)
.++|+|.....+.+++..+.++||||+.+ . ...+...+..+|++++|+|++.+..+ ...+.......+
T Consensus 210 ~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~----~~~~~~~~~~~L 285 (364)
T 2qtf_A 210 LFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENL----LIETLQSSFEIL 285 (364)
T ss_dssp ----CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHH----HHHHHHHHHHHH
T ss_pred cccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcch----HHHHHHHHHHHH
Confidence 34566777777888889999999999732 1 23455667889999999999876300 001222223444
Q ss_pred HHhC--CCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 307 RSLG--VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 307 ~~~~--i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
...+ -.++|+|.||+|+.+.... +....+..+...+.. ...+++++||++|.|+++
T Consensus 286 ~~l~~~~~p~ilV~NK~Dl~~~~~~---~~~~~~~~l~~~l~~--~~~~~~~~SA~~g~gi~~ 343 (364)
T 2qtf_A 286 REIGVSGKPILVTLNKIDKINGDLY---KKLDLVEKLSKELYS--PIFDVIPISALKRTNLEL 343 (364)
T ss_dssp HHHTCCSCCEEEEEECGGGCCSCHH---HHHHHHHHHHHHHCS--CEEEEEECBTTTTBSHHH
T ss_pred HHhCcCCCCEEEEEECCCCCCchHH---HHHHHHHHHHHHhcC--CCCcEEEEECCCCcCHHH
Confidence 4432 2357799999998753221 111222122222211 123689999999999998
No 178
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.44 E-value=2.6e-13 Score=136.39 Aligned_cols=107 Identities=18% Similarity=0.216 Sum_probs=68.6
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhh-HHHHHHHHHh-CCCeEEEEEecCCCCCch
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQT-REHALLVRSL-GVNQLGVVINKLDTVSWS 327 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt-~~~l~~l~~~-~i~~iIVviNKiDl~~~~ 327 (902)
...+.||||||+.+|...+...+..+|++|+|+|+++... | ... ...+..+... ...++|+|+||+|+.+..
T Consensus 54 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~ 127 (184)
T 1m7b_A 54 RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPET---L---DSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 127 (184)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHH---H---HHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCH
T ss_pred EEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHH---H---HHHHHHHHHHHHHHCCCCCEEEEEEcchhhcch
Confidence 3578999999999987777777889999999999987521 0 011 1222333332 234688999999997421
Q ss_pred HHHHHHH---------HHHHHHhhhhcCCCCCCceEecCCCc-cCCCCCC
Q psy15197 328 QDRFQEI---------VTKLGAFLKQAGFRDSDIEYVPCSGL-TGENLTT 367 (902)
Q Consensus 328 ~~~~~~i---------~~~l~~~l~~~~~~~~~~~ii~iSA~-~G~gI~~ 367 (902)
....++ .++...+.+..+. .+++++||+ +|.|+++
T Consensus 128 -~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~gi~~ 172 (184)
T 1m7b_A 128 -STLVELSNHRQTPVSYDQGANMAKQIGA----ATYIECSALQSENSVRD 172 (184)
T ss_dssp -HHHHHHHTTTCCCCCHHHHHHHHHHHTC----SEEEECBTTTBHHHHHH
T ss_pred -hhHhhhhhcccCCCCHHHHHHHHHHcCC----cEEEEeeecCCCcCHHH
Confidence 111111 1223334444442 389999999 6899998
No 179
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.44 E-value=1.4e-12 Score=129.67 Aligned_cols=98 Identities=16% Similarity=0.097 Sum_probs=60.5
Q ss_pred eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh-----CCCeEEEEEecCCCCC
Q psy15197 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL-----GVNQLGVVINKLDTVS 325 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~-----~i~~iIVviNKiDl~~ 325 (902)
..+.||||||+++ ...++.+|++|+|+|+++... | ......+..+... ...++|+|+||+|+.+
T Consensus 54 ~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~s---~---~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 122 (178)
T 2iwr_A 54 HLVLIREEAGAPD-----AKFSGWADAVIFVFSLEDENS---F---QAVSRLHGQLSSLRGEGRGGLALALVGTQDRISA 122 (178)
T ss_dssp EEEEEEECSSSCC-----HHHHHHCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBT
T ss_pred EEEEEEECCCCch-----hHHHHhCCEEEEEEECcCHHH---H---HHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 4688999999987 356788999999999987521 1 0112222223322 1245789999999842
Q ss_pred ch--HHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 326 WS--QDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 326 ~~--~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.. ....++ ...+.+..+ .++++++||++|.|+++
T Consensus 123 ~~~~~v~~~~----~~~~~~~~~----~~~~~~~Sa~~~~~i~~ 158 (178)
T 2iwr_A 123 SSPRVVGDAR----ARALXADMK----RCSYYETXATYGLNVDR 158 (178)
T ss_dssp TBCCCSCHHH----HHHHHHHHS----SEEEEEEBTTTTBTHHH
T ss_pred cccCcCCHHH----HHHHHHhhc----CCeEEEEeccccCCHHH
Confidence 11 101111 122222221 24899999999999998
No 180
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.43 E-value=5e-13 Score=146.67 Aligned_cols=110 Identities=23% Similarity=0.199 Sum_probs=70.4
Q ss_pred EEECCe--EEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhH--HHHHHHHHh-CCCeEEEEEec
Q psy15197 246 FETKTK--YITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTR--EHALLVRSL-GVNQLGVVINK 320 (902)
Q Consensus 246 ~~~~~~--~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~--~~l~~l~~~-~i~~iIVviNK 320 (902)
+..++. .+.||||||+.+|...+...+..+|++|+|+|+++... .... ..+..+... ...++|+|+||
T Consensus 196 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s-------~~~~~~~~~~~~~~~~~~~p~ilv~nK 268 (332)
T 2wkq_A 196 VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPAS-------FHHVRAKWYPEVRHHCPNTPIILVGTK 268 (332)
T ss_dssp EEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHH-------HHHHHHTHHHHHHHHCTTSCEEEEEEC
T ss_pred EEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHH-------HHHHHHHHHHHHHhhCCCCcEEEEEEc
Confidence 334444 46699999999988888888889999999999987521 1111 222333333 12457799999
Q ss_pred CCCCCchHHHHHHH---------HHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 321 LDTVSWSQDRFQEI---------VTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 321 iDl~~~~~~~~~~i---------~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+|+.+... ..+.+ .++...+.+..++ .+++++||++|.|+++
T Consensus 269 ~Dl~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~~~gi~~ 319 (332)
T 2wkq_A 269 LDLRDDKD-TIEKLKEKKLTPITYPQGLAMAKEIGA----VKYLECSALTQRGLKT 319 (332)
T ss_dssp HHHHTCHH-HHHHHHHTTCCCCCHHHHHHHHHHTTC----SEEEECCTTTCTTHHH
T ss_pred hhcccccc-hhhhccccccccccHHHHHHHHHHcCC----cEEEEecCCCCcCHHH
Confidence 99864211 11111 1122333344332 3899999999999998
No 181
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.41 E-value=4.5e-13 Score=137.92 Aligned_cols=107 Identities=18% Similarity=0.216 Sum_probs=68.5
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhh-HHHHHHHHHh-CCCeEEEEEecCCCCCch
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQT-REHALLVRSL-GVNQLGVVINKLDTVSWS 327 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt-~~~l~~l~~~-~i~~iIVviNKiDl~~~~ 327 (902)
...+.||||||+.+|.......+..+|++|+|+|+++... | ... ...+..+... ...++|+|+||+|+.+..
T Consensus 75 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s---~---~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~ 148 (205)
T 1gwn_A 75 RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPET---L---DSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 148 (205)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHH---H---HHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCH
T ss_pred EEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHHHCCCCCEEEEEechhhccch
Confidence 3579999999999987777777889999999999987521 0 011 1222333332 234688999999997421
Q ss_pred HHHHHHH---------HHHHHHhhhhcCCCCCCceEecCCCc-cCCCCCC
Q psy15197 328 QDRFQEI---------VTKLGAFLKQAGFRDSDIEYVPCSGL-TGENLTT 367 (902)
Q Consensus 328 ~~~~~~i---------~~~l~~~l~~~~~~~~~~~ii~iSA~-~G~gI~~ 367 (902)
....++ .++...+.+..+. ++++++||+ +|.||++
T Consensus 149 -~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~SAk~~~~gv~~ 193 (205)
T 1gwn_A 149 -STLVELSNHRQTPVSYDQGANMAKQIGA----ATYIECSALQSENSVRD 193 (205)
T ss_dssp -HHHHHHHTTTCCCCCHHHHHHHHHHHTC----SEEEECCTTTCHHHHHH
T ss_pred -hhhhhhcccccCCCCHHHHHHHHHHcCC----CEEEEeeeccCCcCHHH
Confidence 111111 1223334444442 388999999 6899988
No 182
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.41 E-value=4.8e-13 Score=134.69 Aligned_cols=110 Identities=15% Similarity=0.178 Sum_probs=67.3
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh-CCCeEEEEEecCCCCCchH
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL-GVNQLGVVINKLDTVSWSQ 328 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~-~i~~iIVviNKiDl~~~~~ 328 (902)
...+.+|||||+++|.......++.+|++++|+|.+++.. ++ ......+..+... .-.++|+|.||+|+.+.
T Consensus 55 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~--s~---~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-- 127 (184)
T 2zej_A 55 DLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQA--EV---DAMKPWLFNIKARASSSPVILVGTHLDVSDE-- 127 (184)
T ss_dssp -CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHH--HH---HTHHHHHHHHHHHCTTCEEEEEEECGGGCCH--
T ss_pred ceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchh--HH---HHHHHHHHHHHhhCCCCcEEEEEECCCcccc--
Confidence 5678999999999888777788889999999999987521 01 0112222222222 23457788999998752
Q ss_pred HHHHHH-HHHHHHhhhhcCCCCCCceEecCCCccCC-CCCC
Q psy15197 329 DRFQEI-VTKLGAFLKQAGFRDSDIEYVPCSGLTGE-NLTT 367 (902)
Q Consensus 329 ~~~~~i-~~~l~~~l~~~~~~~~~~~ii~iSA~~G~-gI~~ 367 (902)
...... .+....+.+..++. ...+++++||++|. |+.+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~~~~~ 167 (184)
T 2zej_A 128 KQRKACMSKITKELLNKRGFP-AIRDYHFVNATEESDALAK 167 (184)
T ss_dssp HHHHHHHHHHHHHTTTCTTSC-EEEEEEECCTTSCCHHHHH
T ss_pred hhhHHHHHHHHHHHHHhcCCc-chhheEEEecccCchhHHH
Confidence 111111 12222333333331 01138999999996 8887
No 183
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.41 E-value=5e-13 Score=140.75 Aligned_cols=116 Identities=14% Similarity=0.180 Sum_probs=64.2
Q ss_pred CeEEeeeEEEEEECCeEEEEEeCCCccc-----------hHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHH
Q psy15197 236 GITMDVGQSQFETKTKYITLLDAPGHKD-----------FIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHAL 304 (902)
Q Consensus 236 GiTid~~~~~~~~~~~~i~lIDTPG~~d-----------f~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~ 304 (902)
++|++.....+.+++..+.||||||+.+ +..........+|++|+|+|++... ......+.
T Consensus 63 ~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~--------~~~~~~l~ 134 (239)
T 3lxx_A 63 SITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYT--------EEEHKATE 134 (239)
T ss_dssp --CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCS--------SHHHHHHH
T ss_pred ceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCC--------HHHHHHHH
Confidence 4566666667788899999999999754 2233333334569999999987531 12333332
Q ss_pred HHH-----HhCCCeEEEEEecCCCCCchHHHHHHHH----HHHHHhhhhcCCCCCCceEecCCCccC-----CCCCC
Q psy15197 305 LVR-----SLGVNQLGVVINKLDTVSWSQDRFQEIV----TKLGAFLKQAGFRDSDIEYVPCSGLTG-----ENLTT 367 (902)
Q Consensus 305 ~l~-----~~~i~~iIVviNKiDl~~~~~~~~~~i~----~~l~~~l~~~~~~~~~~~ii~iSA~~G-----~gI~~ 367 (902)
.+. ... .++|+|+||+|+.+. ..+.+.+ +.+..+++.++. .++.+++..+ .++.+
T Consensus 135 ~~~~~~~~~~~-~~~iiv~nK~D~~~~--~~~~~~i~~~~~~l~~l~~~~~~-----~~~~~~~~~~~~~~~~~v~~ 203 (239)
T 3lxx_A 135 KILKMFGERAR-SFMILIFTRKDDLGD--TNLHDYLREAPEDIQDLMDIFGD-----RYCALNNKATGAEQEAQRAQ 203 (239)
T ss_dssp HHHHHHHHHHG-GGEEEEEECGGGC--------------CHHHHHHHHHHSS-----SEEECCTTCCHHHHHHHHHH
T ss_pred HHHHHhhhhcc-ceEEEEEeCCccCCc--ccHHHHHHhchHHHHHHHHHcCC-----EEEEEECCCCccccHHHHHH
Confidence 222 122 357799999998642 1222111 245555666654 3455554432 45555
No 184
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.41 E-value=3e-13 Score=150.55 Aligned_cols=109 Identities=17% Similarity=0.160 Sum_probs=67.3
Q ss_pred EEEECC-eEEEEEeCCCccc-------hHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh----CCC
Q psy15197 245 QFETKT-KYITLLDAPGHKD-------FIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL----GVN 312 (902)
Q Consensus 245 ~~~~~~-~~i~lIDTPG~~d-------f~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~----~i~ 312 (902)
.+.+++ ..+.|+||||+.+ +.......+..+|++|+|+|++...... .......++..+... ...
T Consensus 199 ~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~---~~~~~~~~~~eL~~~~~~l~~~ 275 (342)
T 1lnz_A 199 MVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRD---PYDDYLTINQELSEYNLRLTER 275 (342)
T ss_dssp EEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCC---HHHHHHHHHHHHHHSCSSTTTS
T ss_pred EEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccC---hHHHHHHHHHHHHHhhhhhcCC
Confidence 344554 7899999999754 4455666677899999999997521000 001223333444442 124
Q ss_pred eEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 313 QLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 313 ~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
++|+|+||+|+.+. .+.. +++. +.+.. ..+++++||+++.|+++
T Consensus 276 p~ilV~NK~Dl~~~-~e~~----~~l~---~~l~~---~~~v~~iSA~tg~gi~e 319 (342)
T 1lnz_A 276 PQIIVANKMDMPEA-AENL----EAFK---EKLTD---DYPVFPISAVTREGLRE 319 (342)
T ss_dssp CBCBEEECTTSTTH-HHHH----HHHH---HHCCS---CCCBCCCSSCCSSTTHH
T ss_pred CEEEEEECccCCCC-HHHH----HHHH---HHhhc---CCCEEEEECCCCcCHHH
Confidence 46799999999752 1112 2222 22221 14789999999999998
No 185
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.40 E-value=1e-12 Score=142.58 Aligned_cols=104 Identities=22% Similarity=0.133 Sum_probs=65.6
Q ss_pred CeEEEEEeCCCcc-------------chHHHHHHHHHHcCEEE-EEEECCCCccccccCCchhhH-HHHHHHHHhCCCeE
Q psy15197 250 TKYITLLDAPGHK-------------DFIPNMITGATQADVAL-LVVDATRGEFETGFESGGQTR-EHALLVRSLGVNQL 314 (902)
Q Consensus 250 ~~~i~lIDTPG~~-------------df~~~~~~~l~~aD~aI-lVVDa~~g~~E~~~~~~~qt~-~~l~~l~~~~i~~i 314 (902)
...++||||||+. .+...+..++..++.+| +|+|++.+.. .+.. .++..+...+.+ +
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~-------~~~~~~~~~~~~~~~~~-~ 195 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLA-------NSDALKIAKEVDPQGQR-T 195 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGG-------GCHHHHHHHHHCTTCSS-E
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchh-------hhHHHHHHHHhCCCCCe-E
Confidence 4789999999974 35556777788888776 6999987632 2332 344444444544 7
Q ss_pred EEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 315 GVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 315 IVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
|+|+||+|+.+.... .. +.+...+... .....+++++||++|.|+.+
T Consensus 196 i~V~NK~Dl~~~~~~-~~---~~~~~~~~~~--~~~~~~v~~~SA~~~~gi~~ 242 (299)
T 2aka_B 196 IGVITKLDLMDEGTD-AR---DVLENKLLPL--RRGYIGVVNRSQKDIDGKKD 242 (299)
T ss_dssp EEEEECGGGSCTTCC-CH---HHHTTCSSCC--TTCEEECCCCCCBCTTSCBC
T ss_pred EEEEEccccCCCCch-HH---HHHhCCcCcC--CCCcEEEECCChhhcccccc
Confidence 799999999753211 11 1122111111 11124789999999999998
No 186
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.39 E-value=4.3e-12 Score=136.40 Aligned_cols=79 Identities=14% Similarity=0.015 Sum_probs=50.8
Q ss_pred eEEEEEECCeEEEEEeCCCccchH---HHHHHHHH------HcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh-CC
Q psy15197 242 GQSQFETKTKYITLLDAPGHKDFI---PNMITGAT------QADVALLVVDATRGEFETGFESGGQTREHALLVRSL-GV 311 (902)
Q Consensus 242 ~~~~~~~~~~~i~lIDTPG~~df~---~~~~~~l~------~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~-~i 311 (902)
....+..++..++||||||+.++. ......+. .+|++|+|+|.+...+ .....+.+..+... +.
T Consensus 78 ~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~------~~~~~~~~~~l~~~~~~ 151 (270)
T 1h65_A 78 VMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRV------DNLDKLVAKAITDSFGK 151 (270)
T ss_dssp EEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCC------CHHHHHHHHHHHHHHCG
T ss_pred EEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcC------CHHHHHHHHHHHHHhCc
Confidence 334466778899999999997743 22222222 6999999998865311 12334455444433 42
Q ss_pred ---CeEEEEEecCCCCCc
Q psy15197 312 ---NQLGVVINKLDTVSW 326 (902)
Q Consensus 312 ---~~iIVviNKiDl~~~ 326 (902)
.++|+|+||+|+.+.
T Consensus 152 ~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 152 GIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp GGGGGEEEEEECCSCCCG
T ss_pred ccccCEEEEEECcccCCc
Confidence 358899999999753
No 187
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.38 E-value=1e-12 Score=143.90 Aligned_cols=83 Identities=19% Similarity=0.194 Sum_probs=54.6
Q ss_pred CeEEeeeEEEEEE-CCeEEEEEeCCCccc-------------hHHHHHHHHHHcCEEEEEEEC-CCCccccccCCchhhH
Q psy15197 236 GITMDVGQSQFET-KTKYITLLDAPGHKD-------------FIPNMITGATQADVALLVVDA-TRGEFETGFESGGQTR 300 (902)
Q Consensus 236 GiTid~~~~~~~~-~~~~i~lIDTPG~~d-------------f~~~~~~~l~~aD~aIlVVDa-~~g~~E~~~~~~~qt~ 300 (902)
|++.+.....+.. .+..++||||||+.+ +...+..++..+|++|+|+|+ +.+... .+..
T Consensus 115 ~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~------~~~~ 188 (315)
T 1jwy_B 115 GISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLAN------SDAL 188 (315)
T ss_dssp -CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTT------CSHH
T ss_pred CccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhh------hHHH
Confidence 3433333333333 457899999999864 667788889999999999997 444211 1223
Q ss_pred HHHHHHHHhCCCeEEEEEecCCCCC
Q psy15197 301 EHALLVRSLGVNQLGVVINKLDTVS 325 (902)
Q Consensus 301 ~~l~~l~~~~i~~iIVviNKiDl~~ 325 (902)
..+..+...+.+ +|+|+||+|+.+
T Consensus 189 ~i~~~~~~~~~~-~i~v~NK~Dl~~ 212 (315)
T 1jwy_B 189 QLAKEVDPEGKR-TIGVITKLDLMD 212 (315)
T ss_dssp HHHHHHCSSCSS-EEEEEECTTSSC
T ss_pred HHHHHhCCCCCc-EEEEEcCcccCC
Confidence 455555545655 779999999975
No 188
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.37 E-value=9.6e-13 Score=155.25 Aligned_cols=100 Identities=15% Similarity=0.138 Sum_probs=66.9
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhC-CCeEEEEEecCCCCCchH
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLG-VNQLGVVINKLDTVSWSQ 328 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~-i~~iIVviNKiDl~~~~~ 328 (902)
+..+.|+||||++.|.......++.+|++|+|+|++.. ......+..+...+ ..++|+|+||+|+.+...
T Consensus 97 ~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~---------~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~ 167 (535)
T 3dpu_A 97 ECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD---------SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYN 167 (535)
T ss_dssp TCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG---------GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCC
T ss_pred eEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc---------hhHHHHHHHHHHhCCCCCEEEEEECCCcccccc
Confidence 56899999999999888788888899999999999754 23444555555543 234779999999975221
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 329 DRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 329 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
... +++...++..+. +++++||++|.||.+
T Consensus 168 v~~----~~~~~~~~~~~~-----~~~~vSA~~g~gi~e 197 (535)
T 3dpu_A 168 IEQ----KKINERFPAIEN-----RFHRISCKNGDGVES 197 (535)
T ss_dssp CCH----HHHHHHCGGGTT-----CEEECCC-----CTT
T ss_pred cCH----HHHHHHHHhcCC-----ceEEEecCcccCHHH
Confidence 111 223334444443 799999999999999
No 189
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.36 E-value=1.7e-12 Score=133.97 Aligned_cols=105 Identities=12% Similarity=0.134 Sum_probs=58.0
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHH----cCEEEEEEECC-CCccccccCCchhhHHHHHHHHH------hCCCeEEEEE
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQ----ADVALLVVDAT-RGEFETGFESGGQTREHALLVRS------LGVNQLGVVI 318 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~----aD~aIlVVDa~-~g~~E~~~~~~~qt~~~l~~l~~------~~i~~iIVvi 318 (902)
...+.||||||+.++...+...+.. +|++|+|+|++ ... ++ .........++.. .++ ++++|+
T Consensus 54 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~-p~ilv~ 127 (218)
T 1nrj_B 54 GSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPK---KL--TTTAEFLVDILSITESSCENGI-DILIAC 127 (218)
T ss_dssp GSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTT---CC--HHHHHHHHHHHHHHHHHSTTCC-CEEEEE
T ss_pred CceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChH---HH--HHHHHHHHHHHhcccccccCCC-CEEEEE
Confidence 4578999999999998888888877 99999999998 321 11 1112222222222 244 477999
Q ss_pred ecCCCCCchH-HH-HHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCC
Q psy15197 319 NKLDTVSWSQ-DR-FQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENL 365 (902)
Q Consensus 319 NKiDl~~~~~-~~-~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI 365 (902)
||+|+.+... .. .+.+.+++..+....+ .+++.+||++|.+-
T Consensus 128 nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~Sa~~~~~~ 171 (218)
T 1nrj_B 128 NKSELFTARPPSKIKDALESEIQKVIERRK-----KSLNEVERKINEED 171 (218)
T ss_dssp ECTTSTTCCCHHHHHHHHHHHHHHHHHHHH-----HHHHC---------
T ss_pred EchHhcccCCHHHHHHHHHHHHHHHHHHHh-----cccccccccccccc
Confidence 9999975322 11 1222233333333322 36899999988763
No 190
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.34 E-value=6.4e-13 Score=137.95 Aligned_cols=101 Identities=22% Similarity=0.090 Sum_probs=59.0
Q ss_pred EEEEEeCCCccch-HHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh---CCCeEEEEEecCCCCCch
Q psy15197 252 YITLLDAPGHKDF-IPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL---GVNQLGVVINKLDTVSWS 327 (902)
Q Consensus 252 ~i~lIDTPG~~df-~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~---~i~~iIVviNKiDl~~~~ 327 (902)
.+.++||+|.... .......++.+|++|+|+|.++... |+ .....+..+... ...++|+|.||+|+.+..
T Consensus 88 ~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~s---f~---~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r 161 (211)
T 2g3y_A 88 TIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRAS---FE---KASELRIQLRRARQTEDIPIILVGNKSDLVRCR 161 (211)
T ss_dssp EEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHH---HH---HHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGC
T ss_pred EEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCc
Confidence 5678999998763 2222333456899999999986411 11 111222223221 123577999999996411
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 328 QDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 328 ~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
....++ ...+....+ ++++++||++|.||++
T Consensus 162 ~v~~~e----~~~~a~~~~-----~~~~e~SAk~g~~v~e 192 (211)
T 2g3y_A 162 EVSVSE----GRACAVVFD-----CKFIETSAAVQHNVKE 192 (211)
T ss_dssp CSCHHH----HHHHHHHHT-----CEEEECBTTTTBSHHH
T ss_pred eEeHHH----HHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 111111 111222333 3889999999999998
No 191
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.34 E-value=6.7e-12 Score=152.22 Aligned_cols=67 Identities=21% Similarity=0.238 Sum_probs=49.1
Q ss_pred eEEEEEeCCCccc---hHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHH-HHHHhCCCeEEEEEecCCCCC
Q psy15197 251 KYITLLDAPGHKD---FIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHAL-LVRSLGVNQLGVVINKLDTVS 325 (902)
Q Consensus 251 ~~i~lIDTPG~~d---f~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~-~l~~~~i~~iIVviNKiDl~~ 325 (902)
..++||||||+.+ ....+..++..+|++|+|+|++.+.. ......+. .+...+.+ +++|+||+|+..
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s-------~~e~~~l~~~l~~~~~~-iiiVlNK~Dl~~ 244 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCT-------LGERRYLENYIKGRGLT-VFFLVNAWDQVR 244 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTC-------HHHHHHHHHHTTTSCCC-EEEEEECGGGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccc-------hhHHHHHHHHHHhhCCC-EEEEEECccccc
Confidence 4699999999876 55667788899999999999987732 23333332 33334555 779999999864
No 192
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.34 E-value=1.2e-12 Score=133.03 Aligned_cols=100 Identities=22% Similarity=0.125 Sum_probs=57.9
Q ss_pred EEEEEeCCCccc-hHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh----CCCeEEEEEecCCCCCc
Q psy15197 252 YITLLDAPGHKD-FIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL----GVNQLGVVINKLDTVSW 326 (902)
Q Consensus 252 ~i~lIDTPG~~d-f~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~----~i~~iIVviNKiDl~~~ 326 (902)
.+.++||+|... +.......++.+|++|+|+|.++... |+ .....+..+... ++ ++|+|.||+|+...
T Consensus 57 ~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s---~~---~~~~~~~~l~~~~~~~~~-piilV~NK~Dl~~~ 129 (192)
T 2cjw_A 57 TIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRAS---FE---KASELRIQLRRARQTEDI-PIILVGNKSDLVRX 129 (192)
T ss_dssp EEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHH---HH---HHHHHHHHHHHHTTTSCC-CEEEEEECTTCGGG
T ss_pred EEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhCCCCC-eEEEEEechhhhcc
Confidence 567899999765 22223445678999999999986411 11 112222223322 44 47799999998641
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 327 SQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 327 ~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
......+ ...+....+ ++++++||++|.||.+
T Consensus 130 r~v~~~~----~~~~a~~~~-----~~~~e~SA~~g~~v~~ 161 (192)
T 2cjw_A 130 REVSVSE----GRAXAVVFD-----XKFIETSAAVQHNVKE 161 (192)
T ss_dssp CCSCHHH----HHHHHHHTT-----CEEEECBTTTTBSHHH
T ss_pred ccccHHH----HHHHHHHhC-----CceEEeccccCCCHHH
Confidence 1111111 111122222 3789999999999998
No 193
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.30 E-value=2.1e-11 Score=124.74 Aligned_cols=103 Identities=11% Similarity=0.052 Sum_probs=64.9
Q ss_pred EEEEEeCCCccc----------hHHHHHHHH---HHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEE
Q psy15197 252 YITLLDAPGHKD----------FIPNMITGA---TQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVI 318 (902)
Q Consensus 252 ~i~lIDTPG~~d----------f~~~~~~~l---~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVvi 318 (902)
.+.++||||+.. +...+...+ ..+|++++|+|++.+.. ....+...++...+++ ++++.
T Consensus 73 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~-------~~~~~~~~~~~~~~~~-~~~v~ 144 (210)
T 1pui_A 73 GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLK-------DLDQQMIEWAVDSNIA-VLVLL 144 (210)
T ss_dssp TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC-------HHHHHHHHHHHHTTCC-EEEEE
T ss_pred CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCc-------hhHHHHHHHHHHcCCC-eEEEE
Confidence 678999999853 222222333 46899999999987632 2333445556666766 55889
Q ss_pred ecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 319 NKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 319 NKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
||+|+.+..+ .......+...+...+. .+.++++||+++.|+.+
T Consensus 145 nK~D~~s~~~--~~~~~~~~~~~~~~~~~---~~~~~~~Sal~~~~~~~ 188 (210)
T 1pui_A 145 TKADKLASGA--RKAQLNMVREAVLAFNG---DVQVETFSSLKKQGVDK 188 (210)
T ss_dssp ECGGGSCHHH--HHHHHHHHHHHHGGGCS---CEEEEECBTTTTBSHHH
T ss_pred ecccCCCchh--HHHHHHHHHHHHHhcCC---CCceEEEeecCCCCHHH
Confidence 9999875221 11112334444443321 24788999999999998
No 194
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.29 E-value=1.7e-11 Score=124.91 Aligned_cols=108 Identities=17% Similarity=0.137 Sum_probs=68.0
Q ss_pred EEEECC--eEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh--CCCeEEEEEec
Q psy15197 245 QFETKT--KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL--GVNQLGVVINK 320 (902)
Q Consensus 245 ~~~~~~--~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~--~i~~iIVviNK 320 (902)
.+.+++ ..+.|+||||+.++...+...+..+|++|+|+|.+.... + ......+..+... ...++++++||
T Consensus 46 ~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~i~~v~nK 119 (199)
T 2f9l_A 46 SIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLT---Y---ENVERWLKELRDHADSNIVIMLVGNK 119 (199)
T ss_dssp EEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCeEEEEEEC
Confidence 344455 367889999999877666777788999999999986521 0 1112222223322 23457799999
Q ss_pred CCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 321 LDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 321 iDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+|+.+....... +...+....+ ++++.+||+++.|+.+
T Consensus 120 ~Dl~~~~~~~~~----~a~~l~~~~~-----~~~~d~Sal~~~~i~~ 157 (199)
T 2f9l_A 120 SDLRHLRAVPTD----EARAFAEKNN-----LSFIETSALDSTNVEE 157 (199)
T ss_dssp TTCGGGCCSCHH----HHHHHHHHTT-----CEEEECCTTTCTTHHH
T ss_pred cccccccCcCHH----HHHHHHHHcC-----CeEEEEeCCCCCCHHH
Confidence 998642111111 1222333333 3788999999999998
No 195
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.25 E-value=1e-11 Score=125.26 Aligned_cols=70 Identities=20% Similarity=0.246 Sum_probs=45.3
Q ss_pred CCeEEEEEeCCCccchHHHHHHHHHH----cCEEEEEEECC-CCccccccCCchhhHHHH-HHHHH------hCCCeEEE
Q psy15197 249 KTKYITLLDAPGHKDFIPNMITGATQ----ADVALLVVDAT-RGEFETGFESGGQTREHA-LLVRS------LGVNQLGV 316 (902)
Q Consensus 249 ~~~~i~lIDTPG~~df~~~~~~~l~~----aD~aIlVVDa~-~g~~E~~~~~~~qt~~~l-~~l~~------~~i~~iIV 316 (902)
.+..+.||||||+.++...+...+.. +|++|+|+|++ .... + ......+ .++.. .++ ++++
T Consensus 89 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~-p~il 161 (193)
T 2ged_A 89 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKK---L---TTTAEFLVDILSITESSCENGI-DILI 161 (193)
T ss_dssp CCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHH---H---HHHHHHHHHHHHHHHHHSTTCC-CEEE
T ss_pred cCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchh---H---HHHHHHHHHHHhhhhhccccCC-CEEE
Confidence 35678899999998876656666655 89999999998 3210 0 0111112 22211 144 4779
Q ss_pred EEecCCCCC
Q psy15197 317 VINKLDTVS 325 (902)
Q Consensus 317 viNKiDl~~ 325 (902)
|+||+|+.+
T Consensus 162 v~nK~Dl~~ 170 (193)
T 2ged_A 162 ACNKSELFT 170 (193)
T ss_dssp EEECTTSTT
T ss_pred EEEchHhcC
Confidence 999999975
No 196
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.21 E-value=3.4e-11 Score=135.08 Aligned_cols=114 Identities=12% Similarity=0.158 Sum_probs=50.6
Q ss_pred EEeeeEEEEEECCe--EEEEEeCCCccchH-------HHHH-------HHHHHc-------------CEEEEEEECCCCc
Q psy15197 238 TMDVGQSQFETKTK--YITLLDAPGHKDFI-------PNMI-------TGATQA-------------DVALLVVDATRGE 288 (902)
Q Consensus 238 Tid~~~~~~~~~~~--~i~lIDTPG~~df~-------~~~~-------~~l~~a-------------D~aIlVVDa~~g~ 288 (902)
+++.....+...+. .+++|||||+.++. ..+. .++..+ |++|++|+.+...
T Consensus 80 ~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~ 159 (361)
T 2qag_A 80 QIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHG 159 (361)
T ss_dssp EEEEEEEC----CEEEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSS
T ss_pred eEEEEEEEeecCCcccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCC
Confidence 33333333444443 79999999994322 1111 344433 4688888764332
Q ss_pred cccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 289 FETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 289 ~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+ .....+.+..+. .++ ++|+|+||+|+.. ...+....+++...++..+ ++++++||++|.| .+
T Consensus 160 l------~~~d~~~~~~l~-~~~-piIlV~NK~Dl~~--~~ev~~~k~~i~~~~~~~~-----i~~~~~Sa~~~~~-~e 222 (361)
T 2qag_A 160 L------KPLDVAFMKAIH-NKV-NIVPVIAKADTLT--LKERERLKKRILDEIEEHN-----IKIYHLPDAESDE-DE 222 (361)
T ss_dssp C------CHHHHHHHHHTC-S-S-CEEEEEECCSSSC--HHHHHHHHHHHHHHTTCC------CCSCCCC---------
T ss_pred c------chhHHHHHHHhc-cCC-CEEEEEECCCCCC--HHHHHHHHHHHHHHHHHCC-----CCEEeCCCcCCCc-ch
Confidence 1 123333333322 244 4779999999975 3334444445555555544 4889999999988 54
No 197
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.21 E-value=2.5e-11 Score=135.58 Aligned_cols=102 Identities=17% Similarity=0.075 Sum_probs=57.2
Q ss_pred CCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchH
Q psy15197 249 KTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQ 328 (902)
Q Consensus 249 ~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~ 328 (902)
.++.+.|+||||+..-. ......+|++++|+|++.+.. ...+.. .....+ .++|+||+|+.+.
T Consensus 165 ~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~----------~~~i~~-~il~~~-~ivVlNK~Dl~~~-- 227 (349)
T 2www_A 165 AGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDE----------LQGIKR-GIIEMA-DLVAVTKSDGDLI-- 227 (349)
T ss_dssp TTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC-----------------------CCSC-SEEEECCCSGGGH--
T ss_pred CCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchh----------HHHhHH-HHHhcC-CEEEEeeecCCCc--
Confidence 46789999999975322 233568999999999987621 111111 113444 4589999998742
Q ss_pred HHHHHHHHHHHHhhhhcCCC--CCCceEecCCCccCCCCCC
Q psy15197 329 DRFQEIVTKLGAFLKQAGFR--DSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 329 ~~~~~i~~~l~~~l~~~~~~--~~~~~ii~iSA~~G~gI~~ 367 (902)
.........+...++..... ....+++++||++|.|+.+
T Consensus 228 ~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~ 268 (349)
T 2www_A 228 VPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISE 268 (349)
T ss_dssp HHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHH
T ss_pred hhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHH
Confidence 22222233333333321100 0124789999999999998
No 198
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.20 E-value=1.1e-11 Score=140.55 Aligned_cols=37 Identities=22% Similarity=0.209 Sum_probs=23.7
Q ss_pred eEEEEEeCCCccchH-------HHHHHHHHHcCEEEEEEECCCC
Q psy15197 251 KYITLLDAPGHKDFI-------PNMITGATQADVALLVVDATRG 287 (902)
Q Consensus 251 ~~i~lIDTPG~~df~-------~~~~~~l~~aD~aIlVVDa~~g 287 (902)
.++.||||||+.+.. ......++.+|++|+|+|++.+
T Consensus 71 ~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 71 IPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp EEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred EEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 479999999986532 1122346789999999999875
No 199
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.18 E-value=6.3e-11 Score=120.15 Aligned_cols=110 Identities=18% Similarity=0.165 Sum_probs=68.2
Q ss_pred EEEEEECCe--EEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh--CCCeEEEEE
Q psy15197 243 QSQFETKTK--YITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL--GVNQLGVVI 318 (902)
Q Consensus 243 ~~~~~~~~~--~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~--~i~~iIVvi 318 (902)
...+.+++. .+.++||||++++...+...+..++++++|+|.+.... + ......+..+... ...++++++
T Consensus 68 ~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~i~~v~ 141 (191)
T 1oix_A 68 TRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLT---Y---ENVERWLKELRDHADSNIVIMLVG 141 (191)
T ss_dssp EEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred EEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCcEEEEE
Confidence 344555554 45679999999887777777888999999999876421 0 0111222222221 224577999
Q ss_pred ecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 319 NKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 319 NKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
||+|+.+....... +...+....+ +.++.+||+++.|+.+
T Consensus 142 nK~Dl~~~~~~~~~----~a~~l~~~~~-----~~~ld~Sald~~~v~~ 181 (191)
T 1oix_A 142 NKSDLRHLRAVPTD----EARAFAEKNG-----LSFIETSALDSTNVEA 181 (191)
T ss_dssp ECGGGGGGCCSCHH----HHHHHHHHTT-----CEEEECCTTTCTTHHH
T ss_pred ECcccccccccCHH----HHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 99998642111111 1222333333 3788999999999988
No 200
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.17 E-value=4.4e-11 Score=133.84 Aligned_cols=103 Identities=19% Similarity=0.141 Sum_probs=65.1
Q ss_pred ECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCch
Q psy15197 248 TKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWS 327 (902)
Q Consensus 248 ~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~ 327 (902)
..++.++||||||...- ....+..+|++|+|+|+..+... +... . .....+ +|+|+||+|+.+
T Consensus 169 ~~~~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~-------~~l~--~--~~~~~p-~ivVlNK~Dl~~-- 231 (355)
T 3p32_A 169 AAGFDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQL-------QGIK--K--GVLELA-DIVVVNKADGEH-- 231 (355)
T ss_dssp HTTCCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTT-------TTCC--T--TSGGGC-SEEEEECCCGGG--
T ss_pred hCCCCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccH-------HHHH--H--hHhhcC-CEEEEECCCCcC--
Confidence 35789999999997653 22335889999999998765211 1100 0 011234 569999999874
Q ss_pred HHHHHHHHHHHHHhhhhcCCCC--CCceEecCCCccCCCCCC
Q psy15197 328 QDRFQEIVTKLGAFLKQAGFRD--SDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 328 ~~~~~~i~~~l~~~l~~~~~~~--~~~~ii~iSA~~G~gI~~ 367 (902)
........+++...+....... -..|++++||++|.||++
T Consensus 232 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~ 273 (355)
T 3p32_A 232 HKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAE 273 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHH
T ss_pred hhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHH
Confidence 2233444445555544332111 124899999999999998
No 201
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.17 E-value=1.3e-11 Score=137.32 Aligned_cols=103 Identities=16% Similarity=0.078 Sum_probs=62.9
Q ss_pred ECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCch
Q psy15197 248 TKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWS 327 (902)
Q Consensus 248 ~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~ 327 (902)
++++.++||||||+.++... ....+|++|+|+|++.+.. . +.... ...+.+ .++|+||+|+.+
T Consensus 146 ~~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~-----~--~~l~~----~~~~~p-~ivv~NK~Dl~~-- 208 (341)
T 2p67_A 146 AAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDD-----L--QGIKK----GLMEVA-DLIVINKDDGDN-- 208 (341)
T ss_dssp HTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC-------------CCCCH----HHHHHC-SEEEECCCCTTC--
T ss_pred ccCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHH-----H--HHHHH----hhhccc-CEEEEECCCCCC--
Confidence 45789999999999876544 3588999999999976521 0 11100 111334 459999999975
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCC--CceEecCCCccCCCCCC
Q psy15197 328 QDRFQEIVTKLGAFLKQAGFRDS--DIEYVPCSGLTGENLTT 367 (902)
Q Consensus 328 ~~~~~~i~~~l~~~l~~~~~~~~--~~~ii~iSA~~G~gI~~ 367 (902)
...+....+++...+..++.... ..+++++||++|.|+++
T Consensus 209 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~ 250 (341)
T 2p67_A 209 HTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDE 250 (341)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHH
T ss_pred hHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHH
Confidence 22233333444444433321000 23789999999999998
No 202
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.16 E-value=1e-10 Score=141.43 Aligned_cols=119 Identities=21% Similarity=0.187 Sum_probs=74.6
Q ss_pred cCCeEEeeeEEEEEECC-eEEEEEeCCCccc-------------hHHHHHHHH-HHcCEEEEEEECCCCccccccCCchh
Q psy15197 234 NRGITMDVGQSQFETKT-KYITLLDAPGHKD-------------FIPNMITGA-TQADVALLVVDATRGEFETGFESGGQ 298 (902)
Q Consensus 234 ~rGiTid~~~~~~~~~~-~~i~lIDTPG~~d-------------f~~~~~~~l-~~aD~aIlVVDa~~g~~E~~~~~~~q 298 (902)
..|++.+.....+...+ ..++||||||+.+ +...+..++ ..+|++|+|+|++.+.. .+
T Consensus 132 ~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~-------~~ 204 (772)
T 3zvr_A 132 NKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLA-------NS 204 (772)
T ss_dssp TTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSS-------SC
T ss_pred CCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcc-------hh
Confidence 35566666656666554 4799999999764 223344444 36899999999998743 23
Q ss_pred hH-HHHHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhh-hcCCCCCCceEecCCCccCCCCCC
Q psy15197 299 TR-EHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLK-QAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 299 t~-~~l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~-~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.. .++..+...+.| +|+|+||+|+++.... ...+.. ...+. ..++ .+++++||++|.|+++
T Consensus 205 d~l~ll~~L~~~g~p-vIlVlNKiDlv~~~~~-~~~il~--~~~~~l~lg~----~~VV~iSA~~G~Gvde 267 (772)
T 3zvr_A 205 DALKIAKEVDPQGQR-TIGVITKLDLMDEGTD-ARDVLE--NKLLPLRRGY----IGVVNRSQKDIDGKKD 267 (772)
T ss_dssp HHHHHHHHHCTTCSS-EEEEEECTTSSCTTCC-SHHHHT--TCSSCCSSCE----EECCCCCCEESSSSEE
T ss_pred HHHHHHHHHHhcCCC-EEEEEeCcccCCcchh-hHHHHH--HHhhhhhccC----CceEEecccccccchh
Confidence 43 455555555655 6799999999853221 111111 11110 1122 4789999999999998
No 203
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.16 E-value=4e-11 Score=134.56 Aligned_cols=82 Identities=17% Similarity=0.193 Sum_probs=59.9
Q ss_pred cCCeEEeeeEEEEEECCeEEEEEeCCCccc-------hHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHH
Q psy15197 234 NRGITMDVGQSQFETKTKYITLLDAPGHKD-------FIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLV 306 (902)
Q Consensus 234 ~rGiTid~~~~~~~~~~~~i~lIDTPG~~d-------f~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l 306 (902)
..++|++.....+.+.+.++.|+||||+.+ ....++..++.||++++|||++++.. +...+...+
T Consensus 102 ~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~--------~~~~i~~EL 173 (376)
T 4a9a_A 102 YEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLH--------HKQIIEKEL 173 (376)
T ss_dssp TCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHH--------HHHHHHHHH
T ss_pred CCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHH--------HHHHHHHHH
Confidence 356788888888999999999999999865 44567788899999999999987521 222222333
Q ss_pred HHhC----CCeEEEEEecCCC
Q psy15197 307 RSLG----VNQLGVVINKLDT 323 (902)
Q Consensus 307 ~~~~----i~~iIVviNKiDl 323 (902)
...+ .++.++++||+|.
T Consensus 174 ~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 174 EGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp HHTTEEETCCCCCEEEEECSS
T ss_pred HHhhHhhccCChhhhhhHhhh
Confidence 3322 2345589999996
No 204
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.13 E-value=7e-11 Score=132.06 Aligned_cols=119 Identities=22% Similarity=0.143 Sum_probs=66.5
Q ss_pred CCeEEeeeEEEEEEC-CeEEEEEeCCCccc-------------hHHHHHHHHHHc-CEEEEEEECCCCccccccCCchhh
Q psy15197 235 RGITMDVGQSQFETK-TKYITLLDAPGHKD-------------FIPNMITGATQA-DVALLVVDATRGEFETGFESGGQT 299 (902)
Q Consensus 235 rGiTid~~~~~~~~~-~~~i~lIDTPG~~d-------------f~~~~~~~l~~a-D~aIlVVDa~~g~~E~~~~~~~qt 299 (902)
.|+..+.....+... ...++||||||+.+ +...+..++..+ +++++|+|++.+.. .+.
T Consensus 113 ~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~-------~~~ 185 (353)
T 2x2e_A 113 KGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLA-------NSD 185 (353)
T ss_dssp TCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGG-------GCH
T ss_pred CCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccc-------hhH
Confidence 344333333334443 47899999999743 344455566554 46666778776532 233
Q ss_pred H-HHHHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 300 R-EHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 300 ~-~~l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
. ..+..+...+.+ +|+|+||+|+.+.... ...+ +.... ......-.+++++||++|.|+.+
T Consensus 186 ~~~i~~~~~~~~~~-~i~V~NK~Dl~~~~~~-~~~~---~~~~~--~~l~~~~~~v~~~SA~~~~~i~~ 247 (353)
T 2x2e_A 186 ALKVAKEVDPQGQR-TIGVITKLDLMDEGTD-ARDV---LENKL--LPLRRGYIGVVNRSQKDIDGKKD 247 (353)
T ss_dssp HHHHHHHHCTTCTT-EEEEEECGGGSCTTCC-CHHH---HTTCS--SCCTTCEEECCCCCHHHHHTTCC
T ss_pred HHHHHHHhCcCCCc-eEEEeccccccCcchh-HHHH---HhCCc--ccccCCceEEEeCCccccccccc
Confidence 2 244444444555 6799999999753211 1111 11111 11111114789999999999998
No 205
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.13 E-value=1.4e-10 Score=127.36 Aligned_cols=113 Identities=13% Similarity=0.190 Sum_probs=68.6
Q ss_pred CeEEEEEeCCCccchHH---HHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh-CCCeEEEEEecCCCCC
Q psy15197 250 TKYITLLDAPGHKDFIP---NMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL-GVNQLGVVINKLDTVS 325 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~---~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~-~i~~iIVviNKiDl~~ 325 (902)
...+.||||||+++|.. .+..+++.++++|+|+|+++. ++. ......+.+..+... ...++++|.||+|+.+
T Consensus 45 ~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~-~~~---~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~ 120 (331)
T 3r7w_B 45 LIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDE-YIN---AITNLAMIIEYAYKVNPSINIEVLIHKVDGLS 120 (331)
T ss_dssp SSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSC-TTH---HHHHHHHHHHHHHHHCTTCEEEEECCCCCSSC
T ss_pred EEEEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCch-HHH---HHHHHHHHHHHHhhcCCCCcEEEEEECcccCc
Confidence 35799999999999854 467788999999999999876 310 001112222222222 2234779999999975
Q ss_pred chH--HHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 326 WSQ--DRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 326 ~~~--~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
.+. +..+++..+..+.+...++....++++.+||++ .+|.+
T Consensus 121 ~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~e 163 (331)
T 3r7w_B 121 EDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYE 163 (331)
T ss_dssp SHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHH
T ss_pred hhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHH
Confidence 321 112333333333333322212346899999997 47776
No 206
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.12 E-value=1.5e-10 Score=136.61 Aligned_cols=79 Identities=25% Similarity=0.326 Sum_probs=56.4
Q ss_pred eEEEEEeCCCccc-----------hHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEe
Q psy15197 251 KYITLLDAPGHKD-----------FIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVIN 319 (902)
Q Consensus 251 ~~i~lIDTPG~~d-----------f~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviN 319 (902)
..++||||||+.+ |...+..++..+|++|+|+|++... ...+...++..+...+.+ +++|+|
T Consensus 154 ~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~------~~~~~~~~l~~l~~~~~p-vilVlN 226 (550)
T 2qpt_A 154 ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLE------ISDEFSEAIGALRGHEDK-IRVVLN 226 (550)
T ss_dssp HHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCC------CCHHHHHHHHHTTTCGGG-EEEEEE
T ss_pred CCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCC------CCHHHHHHHHHHHhcCCC-EEEEEE
Confidence 4689999999986 6677888899999999999998731 123455555555544544 779999
Q ss_pred cCCCCCchHHHHHHHHHHH
Q psy15197 320 KLDTVSWSQDRFQEIVTKL 338 (902)
Q Consensus 320 KiDl~~~~~~~~~~i~~~l 338 (902)
|+|+++ ...+.++...+
T Consensus 227 K~Dl~~--~~el~~~~~~l 243 (550)
T 2qpt_A 227 KADMVE--TQQLMRVYGAL 243 (550)
T ss_dssp CGGGSC--HHHHHHHHHHH
T ss_pred CCCccC--HHHHHHHHHHh
Confidence 999985 33344444443
No 207
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.11 E-value=1.2e-10 Score=132.70 Aligned_cols=107 Identities=24% Similarity=0.308 Sum_probs=62.3
Q ss_pred EEECC-eEEEEEeCCCccc-------hHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHH-hCCCeEEE
Q psy15197 246 FETKT-KYITLLDAPGHKD-------FIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRS-LGVNQLGV 316 (902)
Q Consensus 246 ~~~~~-~~i~lIDTPG~~d-------f~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~-~~i~~iIV 316 (902)
+.+++ ..++++||||+.+ +.......+..+|.+|+|+|++....+ . ...-.++...+... ...| .|+
T Consensus 199 V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls~~~~~-~--ls~g~~el~~la~aL~~~P-~IL 274 (416)
T 1udx_A 199 VEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLK-T--LETLRKEVGAYDPALLRRP-SLV 274 (416)
T ss_dssp EECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCHHH-H--HHHHHHHHHHHCHHHHHSC-EEE
T ss_pred EEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCccCCHH-H--HHHHHHHHHHHhHHhhcCC-EEE
Confidence 33443 6789999999853 222334445679999999999722110 0 00111122222221 2345 558
Q ss_pred EEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 317 VINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 317 viNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
|+||+|+... ..+ +.+...++..+ ++++++||+++.|+.+
T Consensus 275 VlNKlDl~~~--~~~----~~l~~~l~~~g-----~~vi~iSA~~g~gi~e 314 (416)
T 1udx_A 275 ALNKVDLLEE--EAV----KALADALAREG-----LAVLPVSALTGAGLPA 314 (416)
T ss_dssp EEECCTTSCH--HHH----HHHHHHHHTTT-----SCEEECCTTTCTTHHH
T ss_pred EEECCChhhH--HHH----HHHHHHHHhcC-----CeEEEEECCCccCHHH
Confidence 8899998752 222 23333343333 3789999999999998
No 208
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.10 E-value=2.3e-10 Score=128.12 Aligned_cols=119 Identities=13% Similarity=0.126 Sum_probs=72.0
Q ss_pred CCeEEeeeEEEEEEC-CeEEEEEeCCCccch-------------HHHHHHHHHHcCEEEEEEECCCCccccccCCchhhH
Q psy15197 235 RGITMDVGQSQFETK-TKYITLLDAPGHKDF-------------IPNMITGATQADVALLVVDATRGEFETGFESGGQTR 300 (902)
Q Consensus 235 rGiTid~~~~~~~~~-~~~i~lIDTPG~~df-------------~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~ 300 (902)
.|++.+.....+... ...++||||||+.++ ...+..++..+|++|+|+|+..... ......
T Consensus 119 ~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~-----~~~~~~ 193 (360)
T 3t34_A 119 KAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDL-----ATSDAI 193 (360)
T ss_dssp CCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCG-----GGCHHH
T ss_pred CCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCc-----CCHHHH
Confidence 444444444444433 568999999999876 6778888899999999998754311 011223
Q ss_pred HHHHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCC
Q psy15197 301 EHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 368 (902)
Q Consensus 301 ~~l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~ 368 (902)
..+..+...+.+ +|+|+||+|+.+..... .+.+....... ..+++++|+.++.++.+.
T Consensus 194 ~l~~~~~~~~~~-~i~V~nK~Dl~~~~~~~----~~~~~~~~~~~-----~~~~~~v~~~s~~~i~~~ 251 (360)
T 3t34_A 194 KISREVDPSGDR-TFGVLTKIDLMDKGTDA----VEILEGRSFKL-----KYPWVGVVNRSQADINKN 251 (360)
T ss_dssp HHHHHSCTTCTT-EEEEEECGGGCCTTCCS----HHHHTTSSSCC-----SSCCEEECCCCHHHHHTT
T ss_pred HHHHHhcccCCC-EEEEEeCCccCCCcccH----HHHHcCccccc-----cCCeEEEEECChHHhccC
Confidence 333333333544 77999999997522111 11122111112 247889999998888764
No 209
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.09 E-value=1.1e-10 Score=124.31 Aligned_cols=79 Identities=19% Similarity=0.168 Sum_probs=46.0
Q ss_pred HcCEEEEEEECCCCccccccCCchhhHHHHHHHH----HhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCC
Q psy15197 274 QADVALLVVDATRGEFETGFESGGQTREHALLVR----SLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRD 349 (902)
Q Consensus 274 ~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~----~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~ 349 (902)
.||++|+|+|+++... .+|+ .....+..+. ..++ ++|+|+||+|+.+. ... ++...+.+..
T Consensus 162 ~ad~vilV~D~t~~~~-~s~~---~~~~~l~~i~~~~~~~~~-piilV~NK~Dl~~~--~~v----~~~~~~~~~~---- 226 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMN-RNFD---DQLKFVSNLYNQLAKTKK-PIVVVLTKCDEGVE--RYI----RDAHTFALSK---- 226 (255)
T ss_dssp ECCEEEEEEECBC-----CHH---HHHHHHHHHHHHHHHTTC-CEEEEEECGGGBCH--HHH----HHHHHHHHTS----
T ss_pred cCCEEEEEEECCCCch-hhHH---HHHHHHHHHHHHhccCCC-CEEEEEEccccccc--HHH----HHHHHHHHhc----
Confidence 5899999999987400 0111 1122222222 2344 47799999998641 112 2333333321
Q ss_pred CCceEecCCCccCCCCCC
Q psy15197 350 SDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 350 ~~~~ii~iSA~~G~gI~~ 367 (902)
..++++++||++|.|+.+
T Consensus 227 ~~~~~~e~SAk~g~gv~e 244 (255)
T 3c5h_A 227 KNLQVVETSARSNVNVDL 244 (255)
T ss_dssp SSCCEEECBTTTTBSHHH
T ss_pred CCCeEEEEECCCCCCHHH
Confidence 124889999999999998
No 210
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.08 E-value=7.4e-11 Score=121.92 Aligned_cols=96 Identities=14% Similarity=0.072 Sum_probs=55.7
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHH
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQD 329 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~ 329 (902)
+..+.||||+|....-.. .-..++.+++|+|++.+.. .. .......+.+ +++|+||+|+.+....
T Consensus 108 ~~d~iiidt~G~~~~~~~---~~~~~~~~i~vvd~~~~~~-------~~----~~~~~~~~~~-~iiv~NK~Dl~~~~~~ 172 (221)
T 2wsm_A 108 DCDLLLIENVGNLICPVD---FDLGENYRVVMVSVTEGDD-------VV----EKHPEIFRVA-DLIVINKVALAEAVGA 172 (221)
T ss_dssp TCSEEEEEEEEBSSGGGG---CCCSCSEEEEEEEGGGCTT-------HH----HHCHHHHHTC-SEEEEECGGGHHHHTC
T ss_pred CCCEEEEeCCCCCCCCch---hccccCcEEEEEeCCCcch-------hh----hhhhhhhhcC-CEEEEecccCCcchhh
Confidence 567899999994110000 0014688999999987621 11 1122233455 5589999998631111
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 330 RFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 330 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
...++.+.+ +..+ ..++++++||++|.|+.+
T Consensus 173 ~~~~~~~~~----~~~~---~~~~i~~~Sa~~g~gi~~ 203 (221)
T 2wsm_A 173 DVEKMKADA----KLIN---PRAKIIEMDLKTGKGFEE 203 (221)
T ss_dssp CHHHHHHHH----HHHC---TTSEEEECBTTTTBTHHH
T ss_pred HHHHHHHHH----HHhC---CCCeEEEeecCCCCCHHH
Confidence 223333322 2222 124899999999999998
No 211
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.90 E-value=3.2e-10 Score=127.05 Aligned_cols=130 Identities=12% Similarity=0.101 Sum_probs=70.7
Q ss_pred eEEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCC--chhhHH---HHHHHHH---
Q psy15197 237 ITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFES--GGQTRE---HALLVRS--- 308 (902)
Q Consensus 237 iTid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~--~~qt~~---~l~~l~~--- 308 (902)
.|+......+..++..+.+|||+|++.+...+..++..++++|+|+|.++-.. ..++. .....+ .+..+..
T Consensus 187 ~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq-~l~ed~~~n~~~es~~~~~~i~~~~~ 265 (362)
T 1zcb_A 187 PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQ-VLMEDRQTNRLTESLNIFETIVNNRV 265 (362)
T ss_dssp CCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTC-EETTEEEEEHHHHHHHHHHHHHTCGG
T ss_pred CccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccc-cccccccccHHHHHHHHHHHHhcchh
Confidence 34444556778889999999999999999999999999999999999986200 00000 001122 2222221
Q ss_pred hCCCeEEEEEecCCCCCch----------------HHHHHHHHHHHHHhhhhcCCC--CCCceEecCCCccCCCCCC
Q psy15197 309 LGVNQLGVVINKLDTVSWS----------------QDRFQEIVTKLGAFLKQAGFR--DSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 309 ~~i~~iIVviNKiDl~~~~----------------~~~~~~i~~~l~~~l~~~~~~--~~~~~ii~iSA~~G~gI~~ 367 (902)
....++|+|+||+|+.... ....++..+-+...+..+.-. ...+.++++||++|.||.+
T Consensus 266 ~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~ 342 (362)
T 1zcb_A 266 FSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRL 342 (362)
T ss_dssp GTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHH
T ss_pred hCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHH
Confidence 1224688999999985210 011222222221111111111 2346789999999999998
No 212
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.86 E-value=4e-09 Score=117.76 Aligned_cols=37 Identities=14% Similarity=0.148 Sum_probs=29.9
Q ss_pred CeEEEEEeCCCccchHH-------HHHHHHHHcCEEEEEEECCC
Q psy15197 250 TKYITLLDAPGHKDFIP-------NMITGATQADVALLVVDATR 286 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~-------~~~~~l~~aD~aIlVVDa~~ 286 (902)
...+.||||||+.++.. .....++.+|++++|+|+++
T Consensus 65 ~~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 65 PTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp CCEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred eeEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 35799999999987542 24567889999999999986
No 213
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.85 E-value=1.1e-09 Score=121.72 Aligned_cols=104 Identities=17% Similarity=0.124 Sum_probs=58.1
Q ss_pred ECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCch
Q psy15197 248 TKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWS 327 (902)
Q Consensus 248 ~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~ 327 (902)
..+..+.||||||..+-.. .....+|++++|+|+..+.. .. .... .+.. .+. ++++||+|+...
T Consensus 145 ~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~-----~~-~i~~---~i~~--~~~-ivvlNK~Dl~~~- 208 (337)
T 2qm8_A 145 AAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDE-----LQ-GIKK---GIFE--LAD-MIAVNKADDGDG- 208 (337)
T ss_dssp HTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------------CCT---THHH--HCS-EEEEECCSTTCC-
T ss_pred cCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCccc-----HH-HHHH---HHhc--ccc-EEEEEchhccCc-
Confidence 3578999999999876322 22468999999999865410 00 0000 0111 133 467799997532
Q ss_pred HHHHHHHHHHHHHhhhhcCCC--CCCceEecCCCccCCCCCC
Q psy15197 328 QDRFQEIVTKLGAFLKQAGFR--DSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 328 ~~~~~~i~~~l~~~l~~~~~~--~~~~~ii~iSA~~G~gI~~ 367 (902)
........+++...+..+... .-..+++++||++|.|+++
T Consensus 209 ~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~ 250 (337)
T 2qm8_A 209 ERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDS 250 (337)
T ss_dssp HHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHH
T ss_pred hhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHH
Confidence 111222233343333222200 0013789999999999998
No 214
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.84 E-value=6.4e-09 Score=110.27 Aligned_cols=106 Identities=15% Similarity=0.165 Sum_probs=59.9
Q ss_pred CeEEEEEeCCCccchHHH------HHHHHHHcCEEEEEEECCCCccccccCCchhhHH-H----HHHHHHhCCCeEEEEE
Q psy15197 250 TKYITLLDAPGHKDFIPN------MITGATQADVALLVVDATRGEFETGFESGGQTRE-H----ALLVRSLGVNQLGVVI 318 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~------~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~-~----l~~l~~~~i~~iIVvi 318 (902)
++.+.||||||..++... ....+.. +++|+|+|+..... ..... . .......+.| +++|+
T Consensus 108 ~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~-------~~~~~~~~~~~~~~~~~~~~p-~~iv~ 178 (262)
T 1yrb_A 108 ENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKK-------PNDYCFVRFFALLIDLRLGAT-TIPAL 178 (262)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCS-------HHHHHHHHHHHHHHHHHHTSC-EEEEE
T ss_pred cCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcC-------HHHHHHHHHHHHHHhcccCCC-eEEEE
Confidence 357999999999875322 2234455 89999999875421 11111 1 1122334555 66999
Q ss_pred ecCCCCCchH-HHHHHHHHHHHH---------------------hhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 319 NKLDTVSWSQ-DRFQEIVTKLGA---------------------FLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 319 NKiDl~~~~~-~~~~~i~~~l~~---------------------~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
||+|+..... ..+.+..+++.. .++..+. ..+++++||++|.|+++
T Consensus 179 NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~SA~~~~gi~~ 246 (262)
T 1yrb_A 179 NKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLP---PVRVLYLSAKTREGFED 246 (262)
T ss_dssp CCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSC---CCCCEECCTTTCTTHHH
T ss_pred ecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcC---cccceEEEecCcccHHH
Confidence 9999875221 111111111111 1122221 23789999999999998
No 215
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.82 E-value=3.1e-08 Score=112.82 Aligned_cols=101 Identities=15% Similarity=0.199 Sum_probs=49.9
Q ss_pred eEEEEEeCCCccchHH------HHH--------HH-----------HHH--cCEEEEEEECC-CCccccccCCchhhHHH
Q psy15197 251 KYITLLDAPGHKDFIP------NMI--------TG-----------ATQ--ADVALLVVDAT-RGEFETGFESGGQTREH 302 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~------~~~--------~~-----------l~~--aD~aIlVVDa~-~g~~E~~~~~~~qt~~~ 302 (902)
..++++||||+.++.. .+. .+ +.. ++++|++++.+ .+ ....+...
T Consensus 88 ~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~-------L~~~d~~~ 160 (418)
T 2qag_C 88 LLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHG-------LKPLDIEF 160 (418)
T ss_dssp EEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCS-------CCHHHHHH
T ss_pred cceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccC-------CCHHHHHH
Confidence 3689999999976432 111 11 112 44566666655 34 22344444
Q ss_pred HHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 303 ALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 303 l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+..+.. + .++|+|+||+|+.. ...+....+.+...+...++ +++.+||+++.++.+
T Consensus 161 lk~L~~-~-v~iIlVinK~Dll~--~~ev~~~k~~i~~~~~~~~i-----~~~~~sa~~~~~v~~ 216 (418)
T 2qag_C 161 MKRLHE-K-VNIIPLIAKADTLT--PEECQQFKKQIMKEIQEHKI-----KIYEFPETDDEEENK 216 (418)
T ss_dssp HHHHTT-T-SEEEEEEESTTSSC--HHHHHHHHHHHHHHHHHHTC-----CCCCCC---------
T ss_pred HHHHhc-c-CcEEEEEEcccCcc--HHHHHHHHHHHHHHHHHcCC-----eEEeCCCCCCcCHHH
Confidence 544432 4 45789999999975 33455555666666666554 788999999988776
No 216
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.82 E-value=9.8e-10 Score=122.68 Aligned_cols=131 Identities=12% Similarity=0.098 Sum_probs=80.1
Q ss_pred CeEEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCC--chhhHHHHHHH---HH--
Q psy15197 236 GITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFES--GGQTREHALLV---RS-- 308 (902)
Q Consensus 236 GiTid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~--~~qt~~~l~~l---~~-- 308 (902)
..|+......+..++..+.||||+|++++...+..++..++++|+|+|.++-.. ..++. .....+...++ ..
T Consensus 178 ~~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~-~l~ed~~~nr~~e~~~~~~~i~~~~ 256 (353)
T 1cip_A 178 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL-VLAEDEEMNRMHESMKLFDSICNNK 256 (353)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGC-EETTEEEEEHHHHHHHHHHHHHTCG
T ss_pred CceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccc-cccccchhhhHHHHHHHHHHHHcCc
Confidence 345555566788889999999999999999999999999999999999986210 00000 01122222222 22
Q ss_pred -hCCCeEEEEEecCCCCCch---------------HHHHHHHHHHHHHhhhhcCC--CCCCceEecCCCccCCCCCC
Q psy15197 309 -LGVNQLGVVINKLDTVSWS---------------QDRFQEIVTKLGAFLKQAGF--RDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 309 -~~i~~iIVviNKiDl~~~~---------------~~~~~~i~~~l~~~l~~~~~--~~~~~~ii~iSA~~G~gI~~ 367 (902)
....++|+|+||+|+.... ....++..+.+...+..+.. ....+.++++||++|.||.+
T Consensus 257 ~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~ 333 (353)
T 1cip_A 257 WFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQF 333 (353)
T ss_dssp GGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHH
T ss_pred cccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHH
Confidence 1224688999999984210 00112222222222222211 12356889999999999998
No 217
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.79 E-value=2.4e-08 Score=109.12 Aligned_cols=48 Identities=10% Similarity=0.111 Sum_probs=26.0
Q ss_pred eEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCCC
Q psy15197 313 QLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 368 (902)
Q Consensus 313 ~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~~ 368 (902)
++++|+||.|+.. ...+....+++...++..++ +++++||++| |+++.
T Consensus 157 ~iilV~~K~Dl~~--~~e~~~~~~~~~~~~~~~~~-----~~~e~Sa~~~-~v~e~ 204 (301)
T 2qnr_A 157 NIVPVIAKADTLT--LKERERLKKRILDEIEEHNI-----KIYHLPDAES-DEDED 204 (301)
T ss_dssp CEEEEECCGGGSC--HHHHHHHHHHHHHHHHHTTC-----CCCCCC----------
T ss_pred CEEEEEEeCCCCC--HHHHHHHHHHHHHHHHHcCC-----eEEecCCccc-cccHH
Confidence 4779999999875 22233334455556665554 7899999999 99983
No 218
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.76 E-value=6.7e-09 Score=116.49 Aligned_cols=37 Identities=8% Similarity=0.049 Sum_probs=30.6
Q ss_pred CeEEEEEeCCCccch-------HHHHHHHHHHcCEEEEEEECCC
Q psy15197 250 TKYITLLDAPGHKDF-------IPNMITGATQADVALLVVDATR 286 (902)
Q Consensus 250 ~~~i~lIDTPG~~df-------~~~~~~~l~~aD~aIlVVDa~~ 286 (902)
...+.||||||+.++ .......++.+|++++|+|++.
T Consensus 68 ~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 68 PTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred CceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 457999999999763 3456677899999999999986
No 219
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.65 E-value=1.4e-07 Score=109.67 Aligned_cols=116 Identities=21% Similarity=0.259 Sum_probs=64.5
Q ss_pred CCeEEEEEeCCCccc----hHHHHHHHH--HHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCC
Q psy15197 249 KTKYITLLDAPGHKD----FIPNMITGA--TQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLD 322 (902)
Q Consensus 249 ~~~~i~lIDTPG~~d----f~~~~~~~l--~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiD 322 (902)
.++.++||||||... +........ ..+|.+++|||++.+. .....+..+... ++..+||+||+|
T Consensus 182 ~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~---------~~~~~a~~~~~~-~~i~gvVlNK~D 251 (504)
T 2j37_W 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQ---------ACEAQAKAFKDK-VDVASVIVTKLD 251 (504)
T ss_dssp TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCT---------THHHHHHHHHHH-HCCCCEEEECTT
T ss_pred CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccc---------cHHHHHHHHHhh-cCceEEEEeCCc
Confidence 467899999999863 333332222 2689999999998872 122233333322 342258999999
Q ss_pred CCCchHHHHHHHHHHHHHhhhhcCCCC------CCceEecCCCccCCC-CCCCCCCcccccccCcccHHHHHHhc
Q psy15197 323 TVSWSQDRFQEIVTKLGAFLKQAGFRD------SDIEYVPCSGLTGEN-LTTPSQVPALTSWYSGPCLLDVIDNF 390 (902)
Q Consensus 323 l~~~~~~~~~~i~~~l~~~l~~~~~~~------~~~~ii~iSA~~G~g-I~~~~~~~~~~~w~~g~~Lle~L~~l 390 (902)
........+ .+...+..-+..++... .-.|.+++|++.|.| +.+ |++.+.+.
T Consensus 252 ~~~~~g~~l-~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~---------------Lie~i~e~ 310 (504)
T 2j37_W 252 GHAKGGGAL-SAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEG---------------LIDKVNEL 310 (504)
T ss_dssp SCCCCTHHH-HHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTT---------------THHHHTTT
T ss_pred cccchHHHH-HHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHH---------------HHHHHHHH
Confidence 864221111 12222210000011000 012456789999999 887 77777655
No 220
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.64 E-value=2.7e-08 Score=110.15 Aligned_cols=51 Identities=20% Similarity=0.245 Sum_probs=45.3
Q ss_pred CCeEEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECC
Q psy15197 235 RGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDAT 285 (902)
Q Consensus 235 rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~ 285 (902)
+..|+......+..++..+.+|||+|++.|...+..+++.++++|+|+|.+
T Consensus 145 ~~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS 195 (340)
T 4fid_A 145 RTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLA 195 (340)
T ss_dssp CCCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGG
T ss_pred ccceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECC
Confidence 344666667778889999999999999999999999999999999999997
No 221
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.64 E-value=5e-09 Score=115.53 Aligned_cols=127 Identities=15% Similarity=0.118 Sum_probs=79.9
Q ss_pred CCeEEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECC-------CCccccccCCchhhHHHHHHHH
Q psy15197 235 RGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDAT-------RGEFETGFESGGQTREHALLVR 307 (902)
Q Consensus 235 rGiTid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~-------~g~~E~~~~~~~qt~~~l~~l~ 307 (902)
+.-|+......+..++..+.+|||+|++++...+..+++.++++|+|+|.+ +... . ....+...++.
T Consensus 151 r~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~-----~-nr~~es~~~~~ 224 (327)
T 3ohm_A 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDN-----E-NRMEESKALFR 224 (327)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTT-----S-BHHHHHHHHHH
T ss_pred cCceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECcccccccccccc-----H-hHHHHHHHHHH
Confidence 444666667788889999999999999999999999999999999999876 2110 0 11222222222
Q ss_pred Hh------CCCeEEEEEecCCCCCch----------------HHHHHHHHHHHHHhhhhcCC-CCCCceEecCCCccCCC
Q psy15197 308 SL------GVNQLGVVINKLDTVSWS----------------QDRFQEIVTKLGAFLKQAGF-RDSDIEYVPCSGLTGEN 364 (902)
Q Consensus 308 ~~------~i~~iIVviNKiDl~~~~----------------~~~~~~i~~~l~~~l~~~~~-~~~~~~ii~iSA~~G~g 364 (902)
.. .-.++|+++||+|+.... ....++..+-+...+..... ....+.+.++||+++.|
T Consensus 225 ~i~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~n 304 (327)
T 3ohm_A 225 TIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTEN 304 (327)
T ss_dssp HHHTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHH
T ss_pred HHhhhhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHH
Confidence 21 224588999999974310 01122222222222222211 12346778999999999
Q ss_pred CCC
Q psy15197 365 LTT 367 (902)
Q Consensus 365 I~~ 367 (902)
|..
T Consensus 305 V~~ 307 (327)
T 3ohm_A 305 IRF 307 (327)
T ss_dssp HHH
T ss_pred HHH
Confidence 988
No 222
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.56 E-value=5.4e-08 Score=110.07 Aligned_cols=50 Identities=16% Similarity=0.292 Sum_probs=43.8
Q ss_pred eEEeeeEEEEEECCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCC
Q psy15197 237 ITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATR 286 (902)
Q Consensus 237 iTid~~~~~~~~~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~ 286 (902)
.|+......+..++..+.||||+|+++|...+..+++.++++|||+|.++
T Consensus 203 ~TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ 252 (402)
T 1azs_C 203 LTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSS 252 (402)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTG
T ss_pred ceeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcc
Confidence 34444556778889999999999999999999999999999999999986
No 223
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=98.53 E-value=5e-07 Score=83.23 Aligned_cols=80 Identities=24% Similarity=0.294 Sum_probs=69.3
Q ss_pred CCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCC-cEEEEEEEEEceEeeeeeccCCeEEEeeeccccccce
Q psy15197 398 TKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQN-EVTTVKAVYVDEMSVSAAYAGDNVSVTLLNYDQQNVS 476 (902)
Q Consensus 398 ~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~-~~~~V~sI~~~~~~v~~a~aGdiv~I~l~~~~~~~i~ 476 (902)
..|..+.|..++..-+ |.++.|+|++|+|++|+.| |.+ ...+|++|++++.++++|.+||.|++.+.+... +++
T Consensus 32 ~~P~k~~ilp~~~~vF-gpvivGrVe~G~LK~G~~V---Pg~~~vg~VkSIE~~~e~v~eA~~GdnVai~Ikg~~~-~I~ 106 (116)
T 1xe1_A 32 KPAGKVVVEEVVNIMG-KDVIIGTVESGMIGVGFKV---KGPSGIGGIVRIERNREKVEFAIAGDRIGISIEGKIG-KVK 106 (116)
T ss_dssp SCSEEEEEEEEEEETT-EEEEEEEEEEEEEETTCEE---ECSSCEEEEEEEEETTEEESEEETTCEEEEEEESCCC-CCC
T ss_pred cCcEEEEEEecCCeEE-CCeeEEEEeEEEEcCCCCc---CCCceEEEEEEEEECCcCcCCcCCCCEEEEEEECCcc-ccC
Confidence 4577888887444444 8899999999999999999 777 789999999999999999999999999998766 888
Q ss_pred eecccc
Q psy15197 477 VGFLLS 482 (902)
Q Consensus 477 kG~vL~ 482 (902)
.|++|.
T Consensus 107 ~GdVLy 112 (116)
T 1xe1_A 107 KGDVLE 112 (116)
T ss_dssp TTCEEE
T ss_pred CCcEEE
Confidence 998874
No 224
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.52 E-value=4.9e-07 Score=102.78 Aligned_cols=67 Identities=10% Similarity=0.095 Sum_probs=39.9
Q ss_pred EEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEec
Q psy15197 277 VALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVP 356 (902)
Q Consensus 277 ~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~ 356 (902)
+++||+|+..+. ...+.+++..+. .+ .++|+|+||+|... ......+.+.+...++..| ++|++
T Consensus 151 ~v~fI~d~~~~l-------~~~Dieilk~L~-~~-~~vI~Vi~KtD~Lt--~~E~~~l~~~I~~~L~~~g-----i~I~~ 214 (427)
T 2qag_B 151 CLYFIAPTGHSL-------KSLDLVTMKKLD-SK-VNIIPIIAKADAIS--KSELTKFKIKITSELVSNG-----VQIYQ 214 (427)
T ss_dssp EEEEECCCC----------CHHHHHHHHHTC-SC-SEEEEEESCGGGSC--HHHHHHHHHHHHHHHBTTB-----CCCCC
T ss_pred EEEEEeCCCCCC-------CHHHHHHHHHHh-hC-CCEEEEEcchhccc--hHHHHHHHHHHHHHHHHcC-----CcEEe
Confidence 466778887763 234555555444 34 56889999999875 4445556566655454433 46777
Q ss_pred CCC
Q psy15197 357 CSG 359 (902)
Q Consensus 357 iSA 359 (902)
+|.
T Consensus 215 is~ 217 (427)
T 2qag_B 215 FPT 217 (427)
T ss_dssp CC-
T ss_pred cCC
Confidence 775
No 225
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.49 E-value=1.5e-07 Score=97.21 Aligned_cols=96 Identities=18% Similarity=0.111 Sum_probs=52.5
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHH
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQD 329 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~ 329 (902)
+..+.++||+|...... ..-...+..+.|+|+..+.. . .. .. ....+.+ .++|+||+|+.+....
T Consensus 118 ~~d~~~id~~g~i~~~~---s~~~~~~~~~~v~~~~~~~~-----~--~~-~~---~~~~~~~-~iiv~NK~Dl~~~~~~ 182 (226)
T 2hf9_A 118 EIDLLFIENVGNLICPA---DFDLGTHKRIVVISTTEGDD-----T--IE-KH---PGIMKTA-DLIVINKIDLADAVGA 182 (226)
T ss_dssp GCSEEEEECCSCSSGGG---GCCCSCSEEEEEEEGGGCTT-----T--TT-TC---HHHHTTC-SEEEEECGGGHHHHTC
T ss_pred CCCEEEEeCCCCccCcc---hhhhccCcEEEEEecCcchh-----h--Hh-hh---hhHhhcC-CEEEEeccccCchhHH
Confidence 44788999999421100 00123567788999754311 0 11 00 1113445 5699999998641101
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 330 RFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 330 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
...++ ...++..+. ..+++++||++|.|+.+
T Consensus 183 ~~~~~----~~~~~~~~~---~~~~~~~Sa~~g~gv~~ 213 (226)
T 2hf9_A 183 DIKKM----ENDAKRINP---DAEVVLLSLKTMEGFDK 213 (226)
T ss_dssp CHHHH----HHHHHHHCT---TSEEEECCTTTCTTHHH
T ss_pred HHHHH----HHHHHHhCC---CCeEEEEEecCCCCHHH
Confidence 12222 222332221 24899999999999998
No 226
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.39 E-value=3.6e-08 Score=110.79 Aligned_cols=113 Identities=14% Similarity=0.101 Sum_probs=60.0
Q ss_pred cCCeEEeeeEEEEEECCeEEEEEeCCCccch-------HHHHHHHH---HHcCEEEEEEECCCCccccccCCchhhHHHH
Q psy15197 234 NRGITMDVGQSQFETKTKYITLLDAPGHKDF-------IPNMITGA---TQADVALLVVDATRGEFETGFESGGQTREHA 303 (902)
Q Consensus 234 ~rGiTid~~~~~~~~~~~~i~lIDTPG~~df-------~~~~~~~l---~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l 303 (902)
.+|+|++.....+ . ..+.++||||+.+. .......+ ...|.+++++++....+..++.. +
T Consensus 198 ~~gtT~~~~~~~~--~-~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-------l 267 (369)
T 3ec1_A 198 FPGTTLDMIEIPL--E-SGATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLAR-------L 267 (369)
T ss_dssp CTTSSCEEEEEEC--S-TTCEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEE-------E
T ss_pred CCCeEEeeEEEEe--C-CCeEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEE-------E
Confidence 4566666543322 2 24899999998641 12233334 56899999999854322111111 1
Q ss_pred HHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 304 LLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 304 ~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
..+...+. ++++++||+|...... .+...+.+++ .++. .+.+.++....++.+
T Consensus 268 ~~l~~~~~-~~~~v~~k~d~~~~~~--~~~~~~~~~~---~~g~-----~l~p~~~~~~~~~~~ 320 (369)
T 3ec1_A 268 DYIKGGRR-SFVCYMANELTVHRTK--LEKADSLYAN---QLGE-----LLSPPSKRYAAEFPP 320 (369)
T ss_dssp EEEESSSE-EEEEEECTTSCEEEEE--GGGHHHHHHH---HBTT-----TBCSSCGGGTTTCCC
T ss_pred EEccCCCc-eEEEEecCCccccccc--HHHHHHHHHH---hcCC-----ccCCCCchhhhhccC
Confidence 12222343 4789999999875221 1222222222 2332 456667766555554
No 227
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.37 E-value=3e-08 Score=111.41 Aligned_cols=114 Identities=14% Similarity=0.107 Sum_probs=57.6
Q ss_pred ccCCeEEeeeEEEEEECCeEEEEEeCCCccch-------HHHHHHH---HHHcCEEEEEEECCCCccccccCCchhhHHH
Q psy15197 233 LNRGITMDVGQSQFETKTKYITLLDAPGHKDF-------IPNMITG---ATQADVALLVVDATRGEFETGFESGGQTREH 302 (902)
Q Consensus 233 ~~rGiTid~~~~~~~~~~~~i~lIDTPG~~df-------~~~~~~~---l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~ 302 (902)
..+|+|++.....+ .. .+.++||||+.+. ....+.. ....+.+++++++....+..++..
T Consensus 196 ~~~gtT~~~~~~~~--~~-~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~------- 265 (368)
T 3h2y_A 196 HFPGTTLDLIDIPL--DE-ESSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLAR------- 265 (368)
T ss_dssp CCC----CEEEEES--SS-SCEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEE-------
T ss_pred CCCCeecceEEEEe--cC-CeEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEE-------
Confidence 34567776554332 22 3899999998652 1222222 246789999999854322211111
Q ss_pred HHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 303 ALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 303 l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+..+...+. ++++++||+|..... ..+...+.+++ .+|. .+.+.++....++.+
T Consensus 266 ~d~l~~~~~-~~~~v~nk~d~~~~~--~~~~~~~~~~~---~~g~-----~l~p~~~~~~~~~~~ 319 (368)
T 3h2y_A 266 FDYVSGGRR-AFTCHFSNRLTIHRT--KLEKADELYKN---HAGD-----LLSPPTPEELENMPE 319 (368)
T ss_dssp EEEEESSSE-EEEEEECTTSCEEEE--EHHHHHHHHHH---HBTT-----TBCSSCHHHHHTSCC
T ss_pred EEEecCCCc-eEEEEecCccccccc--cHHHHHHHHHH---HhCC-----ccCCCchhhHhhccC
Confidence 111222343 578999999987532 22333333322 2332 356666665555544
No 228
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.33 E-value=3.7e-07 Score=102.93 Aligned_cols=37 Identities=11% Similarity=0.185 Sum_probs=25.0
Q ss_pred eEEEEEeCCCccchHH-------HHHHHHHHcCEEEEEEECCCC
Q psy15197 251 KYITLLDAPGHKDFIP-------NMITGATQADVALLVVDATRG 287 (902)
Q Consensus 251 ~~i~lIDTPG~~df~~-------~~~~~l~~aD~aIlVVDa~~g 287 (902)
..+.||||||+.++.. .....++.+|++++|+|+++.
T Consensus 86 ~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~ 129 (396)
T 2ohf_A 86 AFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFED 129 (396)
T ss_dssp CEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC---
T ss_pred cccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence 4699999999987544 467788999999999999753
No 229
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.28 E-value=8.4e-06 Score=87.52 Aligned_cols=62 Identities=18% Similarity=0.175 Sum_probs=42.4
Q ss_pred cCEEEEEEECC-CCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCC
Q psy15197 275 ADVALLVVDAT-RGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGF 347 (902)
Q Consensus 275 aD~aIlVVDa~-~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~ 347 (902)
+.++++++|.. .+ ..+.+.+.+..+... ..+|+|+||+|... ........+.+...++..+.
T Consensus 112 al~~lllldep~~g-------L~~lD~~~l~~L~~~--~~vI~Vi~K~D~lt--~~e~~~~k~~i~~~l~~~~i 174 (270)
T 3sop_A 112 VHCCLYFISPTGHS-------LRPLDLEFMKHLSKV--VNIIPVIAKADTMT--LEEKSEFKQRVRKELEVNGI 174 (270)
T ss_dssp CCEEEEEECCCSSS-------CCHHHHHHHHHHHTT--SEEEEEETTGGGSC--HHHHHHHHHHHHHHHHHTTC
T ss_pred eeeeeEEEecCCCc-------CCHHHHHHHHHHHhc--CcEEEEEeccccCC--HHHHHHHHHHHHHHHHHcCc
Confidence 58899999965 44 335666666666654 45889999999886 44555666666666665544
No 230
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...
Probab=98.24 E-value=2.4e-07 Score=110.22 Aligned_cols=101 Identities=29% Similarity=0.399 Sum_probs=87.7
Q ss_pred CccccCCCCCCCCccccccccCCCCCCCCcchhhhhccccccCCCCccchhcccCCCCccccccchhhhccCCCCCCCCC
Q psy15197 90 IPVDTTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFEDRETIIKTIGPHGPVPL 169 (902)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (902)
....||.+|.|+...+--++.++.||+++||..++++|-||++|+||||++|+++.||+|+|..+..+-
T Consensus 77 ~~~~Tt~~G~pv~~~~~s~t~g~rGp~llqD~~l~eklahFdrErIPER~vHAKG~gA~G~F~vt~d~s----------- 145 (753)
T 3ttv_A 77 NYALTTNQGVRIADDQNSLRAGSRGPTLLEDFILREKIAHFDHERIPERIVHARGSAAHGYFQPYKSLS----------- 145 (753)
T ss_dssp TCBCBCTTSCBBSCTTCCEEESTTSCBBTTCHHHHHHHHHHHTCCCCCCSSCCSEEEEEEEEEESSCCT-----------
T ss_pred CCccccCCCCccCCCccceecCCCCccHHHHHHHHHHHHHhcccCCCccccCCCcceEEEEEEECCchh-----------
Confidence 356788999999999999999999999999999999999999999999999999999999999766542
Q ss_pred cccccccccccccCCCCcccccccCCCCccccce
Q psy15197 170 EDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFE 203 (902)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (902)
.|.-..+|...|++.|-.++.+-+.|..+..+
T Consensus 146 --~~t~A~~F~~~Gk~tPv~vRFStv~G~~gs~D 177 (753)
T 3ttv_A 146 --DITKADFLSDPNKITPVFVRFSTVQGGAGSAD 177 (753)
T ss_dssp --TTCCCGGGSCTTCCEEEEEEEECSSSCTTSCT
T ss_pred --HHHhhhhhcCCCceeEEEEEecCCCCCCCCCc
Confidence 25566777777889999999988888777443
No 231
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.13 E-value=1.4e-05 Score=90.76 Aligned_cols=115 Identities=13% Similarity=0.105 Sum_probs=63.9
Q ss_pred EEEEEeCCCccc---hHHHHHH--HHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCc
Q psy15197 252 YITLLDAPGHKD---FIPNMIT--GATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSW 326 (902)
Q Consensus 252 ~i~lIDTPG~~d---f~~~~~~--~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~ 326 (902)
.++++|+||... ....... ++...+..++ +++..+. .+...+...+...+. ++++|+||.|+.-.
T Consensus 121 ~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~~~--------kqrv~la~aL~~~~~-p~~lV~tkpdlllL 190 (413)
T 1tq4_A 121 NVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-ISATRFK--------KNDIDIAKAISMMKK-EFYFVRTKVDSDIT 190 (413)
T ss_dssp TEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EESSCCC--------HHHHHHHHHHHHTTC-EEEEEECCHHHHHH
T ss_pred CeeehHhhcccchHHHHHHHHHHcCCCccCCeEE-eCCCCcc--------HHHHHHHHHHHhcCC-CeEEEEecCccccc
Confidence 578899999753 2223322 2334566555 7775431 355555566666664 57799999996411
Q ss_pred -------hHHHHHHHHHHHHHhh----hhcCCCCCCceEecCCC--ccCCCCCCCCCCcccccccCcccHHHHHHhcCCC
Q psy15197 327 -------SQDRFQEIVTKLGAFL----KQAGFRDSDIEYVPCSG--LTGENLTTPSQVPALTSWYSGPCLLDVIDNFKTP 393 (902)
Q Consensus 327 -------~~~~~~~i~~~l~~~l----~~~~~~~~~~~ii~iSA--~~G~gI~~~~~~~~~~~w~~g~~Lle~L~~l~~p 393 (902)
|.....++.+.+..+. +..+.. ...++++|+ ..+.|+++ |.+.|....|.
T Consensus 191 DEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~--~~~iiliSsh~l~~~~~e~---------------L~d~I~~~Lpe 253 (413)
T 1tq4_A 191 NEADGEPQTFDKEKVLQDIRLNCVNTFRENGIA--EPPIFLLSNKNVCHYDFPV---------------LMDKLISDLPI 253 (413)
T ss_dssp HHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCS--SCCEEECCTTCTTSTTHHH---------------HHHHHHHHSCG
T ss_pred CcccccCCHHHHHHHHHHHHHHHHHHHHhcCCC--CCcEEEEecCcCCccCHHH---------------HHHHHHHhCcc
Confidence 1111223333333332 222221 125788999 66667887 88888665543
No 232
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.10 E-value=1.4e-06 Score=99.81 Aligned_cols=66 Identities=23% Similarity=0.341 Sum_probs=41.4
Q ss_pred CeEEEEEeCCCccchHHHHHHHH------HHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCC-CeEEEEEecCC
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGA------TQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGV-NQLGVVINKLD 322 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l------~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i-~~iIVviNKiD 322 (902)
++.+.||||||...........+ ..+|.+++|+|++.+. .......... ..+ +...+|+||+|
T Consensus 180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---------~~~~~~~~~~-~~~~~i~gvVlnK~D 249 (432)
T 2v3c_C 180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---------QAGIQAKAFK-EAVGEIGSIIVTKLD 249 (432)
T ss_dssp SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---------GHHHHHHHHH-TTSCSCEEEEEECSS
T ss_pred CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---------HHHHHHHHHh-hcccCCeEEEEeCCC
Confidence 56789999999876432222222 2589999999998661 1222222222 234 54668999999
Q ss_pred CCC
Q psy15197 323 TVS 325 (902)
Q Consensus 323 l~~ 325 (902)
...
T Consensus 250 ~~~ 252 (432)
T 2v3c_C 250 GSA 252 (432)
T ss_dssp SCS
T ss_pred Ccc
Confidence 753
No 233
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=98.07 E-value=7.9e-07 Score=105.21 Aligned_cols=99 Identities=30% Similarity=0.413 Sum_probs=82.9
Q ss_pred ccccCCCCCCCCccccccccCCCCCCCCcchhhhhccccccCCCCccchhcccCCCCccccccchhhhccCCCCCCCCCc
Q psy15197 91 PVDTTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFEDRETIIKTIGPHGPVPLE 170 (902)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (902)
...||.+|.|+.+ .--++.++.||+++||..++++|-||++|+||||++|+++.||+|+|..+..+-
T Consensus 22 ~~~Tt~~G~pv~~-~~s~~~g~~Gp~llqD~~l~eklahFdrErIPeR~vHAKG~gA~G~F~vt~d~s------------ 88 (688)
T 3ej6_A 22 QFMTTDFGGNIEE-QFSLKAGGRGSTLLEDFIFRQKLQHFDHERIPERVVHARGAGAHGIFTSYGDWS------------ 88 (688)
T ss_dssp CBCBCTTCCBCCC-SSCCEESTTCCBBTTCHHHHHHHHHHHTCCCCCCSSCCSEEEEEEEEEECSBCT------------
T ss_pred CccccCCCCCcCC-CcceecCCCCchhHHHHHHHHHHHHhcccCCcccccccCceEEEEEEEECCCch------------
Confidence 4568899999986 567899999999999999999999999999999999999999999999766542
Q ss_pred ccccccccccccCCCCcccccccCCCCccccce
Q psy15197 171 DTYYLDKLFHFSGERNPERVVHAKGGGAFGYFE 203 (902)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (902)
.|.-..+|...|++.|-.++.+-+.|..+..+
T Consensus 89 -~~t~A~~f~~~Gk~tPv~vRFStv~G~~gs~D 120 (688)
T 3ej6_A 89 -NITAASFLGAKDKQTPVFVRFSTVAGSRGSAD 120 (688)
T ss_dssp -TTCCCSTTBSTTCEEEEEEEEECSSSCTTCCT
T ss_pred -HhhhhHhhcCCCceeEEEEEecCCCCCCCCcc
Confidence 24556666667888888888887777776433
No 234
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.06 E-value=6e-06 Score=93.16 Aligned_cols=36 Identities=19% Similarity=0.304 Sum_probs=29.1
Q ss_pred eEEEEEeCCCccc-------hHHHHHHHHHHcCEEEEEEECCC
Q psy15197 251 KYITLLDAPGHKD-------FIPNMITGATQADVALLVVDATR 286 (902)
Q Consensus 251 ~~i~lIDTPG~~d-------f~~~~~~~l~~aD~aIlVVDa~~ 286 (902)
..+.++||||+.. +.......++.+|++++|+|+..
T Consensus 85 ~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 85 AFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp EEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4688999999754 34456777889999999999975
No 235
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.04 E-value=2e-06 Score=93.86 Aligned_cols=99 Identities=17% Similarity=0.055 Sum_probs=65.3
Q ss_pred EEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHHHH
Q psy15197 252 YITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRF 331 (902)
Q Consensus 252 ~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~~ 331 (902)
.+.+||| +++|...+..+++.+|++|+|+|+++..+ ++ ......+..+...++| +|+|+||+|+.+. ...
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~--s~---~~l~~~l~~~~~~~~p-iilv~NK~DL~~~--~~v 133 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPET--ST---YIIDKFLVLAEKNELE-TVMVINKMDLYDE--DDL 133 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCC--CH---HHHHHHHHHHHHTTCE-EEEEECCGGGCCH--HHH
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCC--CH---HHHHHHHHHHHHCCCC-EEEEEeHHHcCCc--hhH
Confidence 6889999 88877777778899999999999987631 00 1222333344445654 6799999999752 111
Q ss_pred HHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 332 QEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 332 ~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+++..+++.... . ++++++||++|.|+++
T Consensus 134 ----~~~~~~~~~~~~--~-~~~~~~SAktg~gv~~ 162 (301)
T 1u0l_A 134 ----RKVRELEEIYSG--L-YPIVKTSAKTGMGIEE 162 (301)
T ss_dssp ----HHHHHHHHHHTT--T-SCEEECCTTTCTTHHH
T ss_pred ----HHHHHHHHHHhh--h-CcEEEEECCCCcCHHH
Confidence 112222222221 1 3789999999999988
No 236
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.03 E-value=6.3e-05 Score=85.90 Aligned_cols=93 Identities=22% Similarity=0.327 Sum_probs=54.5
Q ss_pred CeEEEEEeCCCccc----hHHHH--HHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCC
Q psy15197 250 TKYITLLDAPGHKD----FIPNM--ITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDT 323 (902)
Q Consensus 250 ~~~i~lIDTPG~~d----f~~~~--~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl 323 (902)
++.+.||||||... ...+. +.....+|.++||+|++.+ ............ ..+...||+||+|.
T Consensus 182 ~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~g---------q~a~~~a~~f~~-~~~i~gVIlTKlD~ 251 (443)
T 3dm5_A 182 GVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIG---------QQAYNQALAFKE-ATPIGSIIVTKLDG 251 (443)
T ss_dssp TCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGG---------GGHHHHHHHHHH-SCTTEEEEEECCSS
T ss_pred CCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCc---------hhHHHHHHHHHh-hCCCeEEEEECCCC
Confidence 56799999999643 22222 1233458999999999876 122333333332 23445589999998
Q ss_pred CCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 324 VSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 324 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
..... ... ......+ .|+.+++. |++++.
T Consensus 252 ~~~gG----~~l----s~~~~~g-----~PI~fig~--Ge~vdd 280 (443)
T 3dm5_A 252 SAKGG----GAL----SAVAATG-----APIKFIGT--GEKIDD 280 (443)
T ss_dssp CSSHH----HHH----HHHHTTC-----CCEEEEEC--SSSTTC
T ss_pred ccccc----HHH----HHHHHHC-----CCEEEEEc--CCChHH
Confidence 64211 111 1122233 37877774 888876
No 237
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.03 E-value=8.1e-06 Score=88.18 Aligned_cols=92 Identities=15% Similarity=0.160 Sum_probs=59.2
Q ss_pred EEeCCCcc-chHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHHHHHH
Q psy15197 255 LLDAPGHK-DFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQE 333 (902)
Q Consensus 255 lIDTPG~~-df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~ 333 (902)
+-+.|||. +..+.+...+..+|++|.|+|+..+.. ........+ ++.++.|+|+||+|+++ ....
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~-------~~~~~l~~~---l~~kp~ilVlNK~DL~~--~~~~-- 68 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMS-------SRNPMIEDI---LKNKPRIMLLNKADKAD--AAVT-- 68 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTT-------TSCHHHHHH---CSSSCEEEEEECGGGSC--HHHH--
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCc-------cCCHHHHHH---HCCCCEEEEEECcccCC--HHHH--
Confidence 44679997 478889999999999999999998733 111122222 24455779999999986 2222
Q ss_pred HHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 334 IVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 334 i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+....+++..++ +++++||++|.|+.+
T Consensus 69 --~~~~~~~~~~g~-----~~i~iSA~~~~gi~~ 95 (282)
T 1puj_A 69 --QQWKEHFENQGI-----RSLSINSVNGQGLNQ 95 (282)
T ss_dssp --HHHHHHHHTTTC-----CEEECCTTTCTTGGG
T ss_pred --HHHHHHHHhcCC-----cEEEEECCCcccHHH
Confidence 222333443343 789999999999998
No 238
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=98.00 E-value=1.1e-06 Score=104.13 Aligned_cols=97 Identities=27% Similarity=0.421 Sum_probs=83.1
Q ss_pred ccCCCCCCCCccccccccCCCCCCCCcchhhhhccccccCCCCccchhcccCCCCccccccchhhhccCCCCCCCCCccc
Q psy15197 93 DTTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFEDRETIIKTIGPHGPVPLEDT 172 (902)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (902)
.||.+|.|+ ..+--++.++.||+++||..++++|-||++|+||+|++|+++.|++|+|..+..+- .
T Consensus 16 ~tt~~G~pv-~~~~s~~~g~~Gp~ll~D~~l~ekl~hFdreripeR~vHAKG~ga~G~F~vt~d~~-------------~ 81 (688)
T 2iuf_A 16 LTSNVGGPI-QDENSLSAGQRGATLLQDFIFREKIQRFDHERVPERAVHARGTGAHGTFTSYGDWS-------------N 81 (688)
T ss_dssp CBCTTSCBC-CCSSCCEESTTCCBCTTCHHHHHHHHHHHTCCCCCCSSCCSEEEEEEEEEESSCCT-------------T
T ss_pred eecCCCccc-CCccccccCCCCChhhhHHHHHHHHhhcccCCCccccccCCcceeEEEEEECCCch-------------H
Confidence 588999999 88889999999999999999999999999999999999999999999999765542 2
Q ss_pred ccccccccccCCCCcccccccCCCCccccce
Q psy15197 173 YYLDKLFHFSGERNPERVVHAKGGGAFGYFE 203 (902)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (902)
|.-..+|...|+..|-.++.+-+.|..+..+
T Consensus 82 ~t~A~~F~~~Gk~tPv~vRFStv~G~~gs~D 112 (688)
T 2iuf_A 82 LTAASFLSAEGKETPMFTRFSTVAGSRGSAD 112 (688)
T ss_dssp TCCCGGGSSTTCEEEEEEEEECSSCCTTCCT
T ss_pred hhhhhhhcCCCceEEEEEEccCCCCCCCCCc
Confidence 5556667666888888888888887777444
No 239
>1a4e_A Catalase A; oxidoreductase, peroxidase; HET: HEM; 2.40A {Saccharomyces cerevisiae} SCOP: e.5.1.1
Probab=97.99 E-value=1.7e-06 Score=98.85 Aligned_cols=100 Identities=37% Similarity=0.586 Sum_probs=85.2
Q ss_pred ccccCCCCCCCCccccccccCCCCCCCCcchhhhhccccccCCCCccchhcccCCCCccccccchhhhccCCCCCCCCCc
Q psy15197 91 PVDTTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFEDRETIIKTIGPHGPVPLE 170 (902)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (902)
...||.+|.|+...+--++.++.||++++|..++++|-||+++.+|+|++|+++.||+|+|..+..+-
T Consensus 6 ~~~tt~~G~pv~~~~~s~t~G~~Gp~ll~D~~l~ekl~~f~reripeR~vHAKG~ga~G~F~vt~di~------------ 73 (488)
T 1a4e_A 6 RVVTNSTGNPINEPFVTQRIGEHGPLLLQDYNLIDSLAHFNRENIPQRNPHAHGSGAFGYFEVTDDIT------------ 73 (488)
T ss_dssp CBCBCTTSCBCSSSSCEEEETTTSCBBTTCHHHHHHHHHHTTCCCCCCSSCCSEEEEEEEEEECSCCT------------
T ss_pred cccccCCCCccCCCccceecCCCCCcccccHHHHHHHHhhcCCCCCccccCCCceEEEEEEEECCCch------------
Confidence 45689999999999999999999999999999999999999999999999999999999998655442
Q ss_pred ccccccccccccCCCCcccccccCCCCccccce
Q psy15197 171 DTYYLDKLFHFSGERNPERVVHAKGGGAFGYFE 203 (902)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (902)
.|.-..+|...|+..|-.++.+.+.|..+..+
T Consensus 74 -~~t~a~~F~~~Gk~tpv~vRFStv~G~~gs~D 105 (488)
T 1a4e_A 74 -DICGSAMFSKIGKRTKCLTRFSTVGGDKGSAD 105 (488)
T ss_dssp -TTCCCGGGSSTTCEEEEEEEEECSSSCTTCCS
T ss_pred -HhhhchhccCCCceeeEEEEeecCCCCCCCCC
Confidence 24455666666788888888888888777444
No 240
>2j2m_A Catalase; functional class, oxidoreductase; HET: HEM; 2.4A {Exiguobacterium oxidotolerans}
Probab=97.94 E-value=2.1e-06 Score=98.20 Aligned_cols=99 Identities=32% Similarity=0.430 Sum_probs=84.1
Q ss_pred cccCCCCCCCCccccccccCCCCCCCCcchhhhhccccccCCCCccchhcccCCCCccccccchhhhccCCCCCCCCCcc
Q psy15197 92 VDTTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFEDRETIIKTIGPHGPVPLED 171 (902)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (902)
..||.+|.|+...+--++.++.||++++|..++++|-||++|.+|+|++|+++.||+|+|..+..+-
T Consensus 7 ~~tt~~G~pv~~~~~s~t~G~~Gp~ll~d~~l~ekl~~f~reripeR~vHAKG~ga~G~F~vt~di~------------- 73 (491)
T 2j2m_A 7 KLTTNQGVPIGDNQNSRTAGRRGPTLLEDYQLIEKIAHFDRERVPERVVHARGFGAHGVFKVKNSMK------------- 73 (491)
T ss_dssp BCBCTTCCBCSCSSCCEESSTTSCBBTTCHHHHHHHHHHTTCCCBCCSSCCSEEEEEEEEEECSCCT-------------
T ss_pred ccccCCCCccCCCccceecCCCCCcccccHHHHHHHHhhcCCCCCCccccCCcceeEEEEEECCcch-------------
Confidence 3588999999999999999999999999999999999999999999999999999999998655442
Q ss_pred cccccccccccCCCCcccccccCCCCccccce
Q psy15197 172 TYYLDKLFHFSGERNPERVVHAKGGGAFGYFE 203 (902)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (902)
.|.-..+|...|+..|-.++.+.+.|..+..+
T Consensus 74 ~~t~a~~F~~~Gk~tpv~vRFStv~G~~gs~D 105 (491)
T 2j2m_A 74 KYTKAAFLQEEGTEVPVFARFSTVIHGTHSPE 105 (491)
T ss_dssp TTCCCGGGSSTTCEEEEEEEEECSSSCTTCCT
T ss_pred HhhhchhccCCCccceeEeeccCCCCCCCCCc
Confidence 24445666666788888888888888777444
No 241
>1dgf_A Catalase; heme, NADPH, hydrogen peroxide, oxidoreductase; HET: HEM NDP; 1.50A {Homo sapiens} SCOP: e.5.1.1 PDB: 1dgg_A* 1f4j_A* 1qqw_A* 1dgh_A* 1dgb_A* 3rgp_A* 3re8_A* 3rgs_A* 3nwl_A* 4blc_A* 1th2_A* 1th3_A* 1th4_A* 1tgu_A* 7cat_A* 8cat_A*
Probab=97.92 E-value=2.3e-06 Score=98.08 Aligned_cols=99 Identities=44% Similarity=0.731 Sum_probs=84.3
Q ss_pred cccCCCCCCCCccccccccCCCCCCCCcchhhhhccccccCCCCccchhcccCCCCccccccchhhhccCCCCCCCCCcc
Q psy15197 92 VDTTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFEDRETIIKTIGPHGPVPLED 171 (902)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (902)
..||.+|.|+...+--++.++.||++++|..++++|-||++|.+|+|++|+++.||+|+|..+..+-
T Consensus 22 ~~tt~~G~pv~~~~~s~t~G~~Gp~ll~D~~l~ekl~~f~reripeR~vHAKG~ga~G~F~vt~di~------------- 88 (497)
T 1dgf_A 22 VLTTGAGNPVGDKLNVITVGPRGPLLVQDVVFTDEMAHFDRERIPERVVHAKGAGAFGYFEVTHDIT------------- 88 (497)
T ss_dssp BCBCTTCCBCSCSSSCEEESTTSCBBTTCHHHHHHHHHHTTCCCCCCSSCCSEEEEEEEEEECSCCT-------------
T ss_pred cccCCCCcccCCCccceecCCCCCcccccHHHHHHHHhhcCCCCCCcccCCCcceeEEEEEECCChh-------------
Confidence 4588999999999999999999999999999999999999999999999999999999999655442
Q ss_pred cccccccccccCCCCcccccccCCCCccccce
Q psy15197 172 TYYLDKLFHFSGERNPERVVHAKGGGAFGYFE 203 (902)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (902)
.|.-..+|...|+..|-.++.+.+.|..+..+
T Consensus 89 ~~t~a~~F~~~Gk~tpv~vRFStv~G~~gs~D 120 (497)
T 1dgf_A 89 KYSKAKVFEHIGKKTPIAVRFSTVAGESGSAD 120 (497)
T ss_dssp TTCCCGGGSSTTCEEEEEEEEECSSSCTTSCS
T ss_pred HhhhchhccCCCceeeEEEEeecCCCCCCCCC
Confidence 24455666666788888888888888777444
No 242
>1m7s_A Catalase; beta barrel, alpha helical domain, oxidoreductase; HET: HEM; 1.80A {Pseudomonas syringae} SCOP: e.5.1.1
Probab=97.92 E-value=2.2e-06 Score=97.91 Aligned_cols=97 Identities=36% Similarity=0.423 Sum_probs=82.8
Q ss_pred ccCCCCCCCCccccccccCCCCCCCCcchhhhhccccccCCCCccchhcccCCCCccccccchhhhccCCCCCCCCCccc
Q psy15197 93 DTTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFEDRETIIKTIGPHGPVPLEDT 172 (902)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (902)
.||.+|.|+...+--++.++.||++++|..++++|-||++|.+|+|++|+++.||+|+|..+..+- .
T Consensus 4 ~tt~~G~pv~~~~~s~t~G~~Gp~ll~D~~l~ekl~~f~reripeR~vHAKG~ga~G~F~vt~di~-------------~ 70 (484)
T 1m7s_A 4 LTRDNGAVVGDNQNSQTAGAQGPVLLQDVQLLQKLQRFDRERIPERVVHARGTGVKGEFTASADIS-------------D 70 (484)
T ss_dssp CBCTTSCBCSCSSSCCEESTTSCBBTTCHHHHHHHHHHTTCCCCCCSSCCSEEEEEEEEEECSCCT-------------T
T ss_pred ccCCCCCccCCCccceecCCCCCcccccHHHHHHHHHhcCCCCCccccCCCcceEEEEEEECCchH-------------H
Confidence 488899999999999999999999999999999999999999999999999999999999655442 2
Q ss_pred ccccccccccCCCCcccccccCCCCccccce
Q psy15197 173 YYLDKLFHFSGERNPERVVHAKGGGAFGYFE 203 (902)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (902)
|.-..+| ..|+..|-.++.+.+.|..+..+
T Consensus 71 ~t~a~~F-~~Gk~tpv~vRFStv~G~~gs~D 100 (484)
T 1m7s_A 71 LSKATVF-KSGEKTPVFVRFSSVVHGNHSPE 100 (484)
T ss_dssp TCCCGGG-STTCEEEEEEEEECSSSCTTCCT
T ss_pred hhhcccc-CCCCeeEEEEEeccCCCCCCCCc
Confidence 4445566 56788888888888888777443
No 243
>2isa_A Catalase; peroxidase, heme, oxidoreductase, iron, hydrogen peroxide; HET: OMT HEM; 1.97A {Vibrio salmonicida} PDB: 1m85_A* 1mqf_A* 1nm0_A* 2cag_A* 2cah_A* 1e93_A* 1h7k_A* 1h6n_A* 3hb6_A*
Probab=97.91 E-value=2.4e-06 Score=97.73 Aligned_cols=98 Identities=37% Similarity=0.556 Sum_probs=83.8
Q ss_pred ccCCCCCCCCccccccccCCCCCCCCcchhhhhccccccCCCCccchhcccCCCCccccccchhhhccCCCCCCCCCccc
Q psy15197 93 DTTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFEDRETIIKTIGPHGPVPLEDT 172 (902)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (902)
.||.+|.|+...+--++.++.||++++|..++++|-||++|.+|+|++|+++.||+|+|..+..+- .
T Consensus 5 ~tt~~g~pv~~~~~s~t~G~~Gp~ll~d~~l~ekl~~f~~eripeR~vHAKG~ga~G~F~vt~di~-------------~ 71 (483)
T 2isa_A 5 LTTAAGCPVAHNQNVQTAGKRGPQLLQDVWFLEKLAHFDREVIPERRMHAKGSGAYGTFTVTHDIT-------------K 71 (483)
T ss_dssp CBCTTSCBCCCSSSCCEESTTSCBBTTCHHHHHHHHHHTTCCCCCCSSCCSEEEEEEEEEECSCCT-------------T
T ss_pred cccCCCCccCCCccceecCCCCCcccccHHHHHHHHHhcCCCCCcccccCCccEEEEEEEECCCch-------------H
Confidence 588999999999999999999999999999999999999999999999999999999998655442 2
Q ss_pred ccccccccccCCCCcccccccCCCCccccce
Q psy15197 173 YYLDKLFHFSGERNPERVVHAKGGGAFGYFE 203 (902)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (902)
|.-..+|...|+..|-.++.+.+.|..+..+
T Consensus 72 ~t~a~~F~~~Gk~tpv~vRFStv~G~~gs~D 102 (483)
T 2isa_A 72 YTKAKIFSDIGKKTDMFARFSTVAGERGAAD 102 (483)
T ss_dssp TCCCGGGSSTTCEEEEEEEEECSSCCTTSCS
T ss_pred hhhchhccCCCceeeEEEEeecCCCCCCCCC
Confidence 4445666666788888888888888777444
No 244
>1qwl_A KATA catalase; beta barrel, azide complex, oxyferryl complex, oxidoreductas; HET: HEM; 1.60A {Helicobacter pylori} SCOP: e.5.1.1 PDB: 1qwm_A* 2a9e_A* 2iqf_A*
Probab=97.91 E-value=2.7e-06 Score=97.51 Aligned_cols=99 Identities=39% Similarity=0.601 Sum_probs=84.0
Q ss_pred cccCCCCCCCCccccccccCCCCCCCCcchhhhhccccccCCCCccchhcccCCCCccccccchhhhccCCCCCCCCCcc
Q psy15197 92 VDTTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFEDRETIIKTIGPHGPVPLED 171 (902)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (902)
..||.+|.|+...+--++.++.||++++|..++++|-||+++.+|+|++|+++.||+|+|..+..+-
T Consensus 7 ~~tt~~G~pv~~~~~s~t~G~~Gp~ll~D~~l~ekl~~f~reripeR~vHAKG~ga~G~F~vt~di~------------- 73 (505)
T 1qwl_A 7 KQTTAFGAPVWDDNNVITAGPRGPVLLQSTWFLEKLAAFDRERIPERVVHAKGSGAYGTFTVTKDIT------------- 73 (505)
T ss_dssp CCBCTTSCBCSCSSCCCBSSTTSCBBTTCHHHHHHHHHHTTCCCCCCSSCCSEEEEEEEEEECSCCT-------------
T ss_pred cccCCCCCccCCCccceecCCCCCCcCCcHHHHHHHHHhcCCCCCCccccCCcceeEEEEEECCCch-------------
Confidence 3588999999999999999999999999999999999999999999999999999999999655442
Q ss_pred cccccccccccCCCCcccccccCCCCccccce
Q psy15197 172 TYYLDKLFHFSGERNPERVVHAKGGGAFGYFE 203 (902)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (902)
.|.-..+|...|+..|-.++.+-+.|..+..+
T Consensus 74 ~~t~A~~F~~~Gk~tpv~vRFStv~G~~gs~D 105 (505)
T 1qwl_A 74 KYTKAKIFSKVGKKTECFFRFSTVAGERGSAD 105 (505)
T ss_dssp TTCCCGGGSSTTCEEEEEEEEECSSCCTTSCS
T ss_pred HhhhchhccCCCceeeEEEEeccCCCCCCCCc
Confidence 24445666666778888888888888777444
No 245
>1si8_A Catalase; N-terminal ARM, anti-parallel beta-barrel, wrapping region, terminal helical region, tetramer, heme group, oxidoreducta; HET: HEM; 2.30A {Enterococcus faecalis} SCOP: e.5.1.1
Probab=97.91 E-value=2.3e-06 Score=97.79 Aligned_cols=98 Identities=38% Similarity=0.561 Sum_probs=83.8
Q ss_pred ccCCCCCCCCccccccccCCCCCCCCcchhhhhccccccCCCCccchhcccCCCCccccccchhhhccCCCCCCCCCccc
Q psy15197 93 DTTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFEDRETIIKTIGPHGPVPLEDT 172 (902)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (902)
.||.+|.|+...+--++.++.||++++|..++++|-||++|.+|+|++|+++.||+|+|..+..+- .
T Consensus 6 ~tt~~G~pv~~~~~s~t~G~~Gp~ll~D~~l~ekl~~f~reripeR~vHAKG~ga~G~F~vt~di~-------------~ 72 (484)
T 1si8_A 6 LTTSQGSPVGDNQNSLTAGEFGPVLIQDVHLLEKLAHFNRERVPERVVHAKGAGAHGIFKVSQSMA-------------Q 72 (484)
T ss_dssp CBCTTSCBCSCSSSCEEESTTSCBBTTCHHHHHHHHHHHTCCCCCCSSCCSEEEEEEEEEESSCCT-------------T
T ss_pred cccCCCcccCCCccceecCCCCCcccccHHHHHHHHHhcCCCCCCccccCCcceeEEEEEECCchh-------------H
Confidence 588999999999999999999999999999999999999999999999999999999998655442 2
Q ss_pred ccccccccccCCCCcccccccCCCCccccce
Q psy15197 173 YYLDKLFHFSGERNPERVVHAKGGGAFGYFE 203 (902)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (902)
|.-..+|...|+..|-.++.+.+.|..+..+
T Consensus 73 ~t~a~~F~~~Gk~tpv~vRFStv~G~~gs~D 103 (484)
T 1si8_A 73 YTKADFLSEVGKETPLFARFSTVAGELGSSD 103 (484)
T ss_dssp TCCCGGGSSTTCEEEEEEEEECSSCCTTCCS
T ss_pred hhhchhccCCCceeeEEEEecCCCCCCCCCc
Confidence 4455666666778888888888888777444
No 246
>1gwe_A Catalase; oxidoreductase, hdyrogen-peroxide:hydrogen peroxide oxidoreductase; HET: HEM; 0.88A {Micrococcus luteus} SCOP: e.5.1.1 PDB: 1gwh_A* 1hbz_A* 1gwf_A*
Probab=97.87 E-value=3.3e-06 Score=96.82 Aligned_cols=97 Identities=34% Similarity=0.509 Sum_probs=82.6
Q ss_pred ccCCCCCCCCccccccccCCCCCCCCcchhhhhccccccCCCCccchhcccCCCCccccccchhhhccCCCCCCCCCccc
Q psy15197 93 DTTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFEDRETIIKTIGPHGPVPLEDT 172 (902)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (902)
.||.+|.|+...+--++.++.||++++|..++++|-||++|.+|+|++|+++.||+|+|..+..+- .
T Consensus 13 ~tt~~G~pv~~~~~s~t~G~~Gp~ll~D~~l~ekl~~f~reripeR~vHAKG~ga~G~F~vt~di~-------------~ 79 (503)
T 1gwe_A 13 STRQNGAPAVSDRQSLTVGSEGPIVLHDTHLLETHQHFNRMNIPERRPHAKGSGAFGEFEVTEDVS-------------K 79 (503)
T ss_dssp CBCTTSSBCSCSSCCCBSTTTSCBCTTCHHHHHHHHHHTTCCCCCCSSCCSEEEEEEEEEECSCCT-------------T
T ss_pred eecCCCcccCCCccceecCCCCCcccccHHHHHHHHHhcCCCCCCcccCCCcceEEEEEEECCchH-------------H
Confidence 588999999999999999999999999999999999999999999999999999999999655442 2
Q ss_pred ccccccccccCCCCcccccccCCCCccccce
Q psy15197 173 YYLDKLFHFSGERNPERVVHAKGGGAFGYFE 203 (902)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (902)
|.-..+|.. |+..|-.++.+.+.|..+..+
T Consensus 80 ~t~A~~F~~-Gk~tpv~vRFStv~G~~gs~D 109 (503)
T 1gwe_A 80 YTKALVFQP-GTKTETLLRFSTVAGELGSPD 109 (503)
T ss_dssp TCCCGGGST-TCEEEEEEEEECSSSCTTSCT
T ss_pred hhhhhhccC-CCeeeEEEEeccCCCCCCCCc
Confidence 444556655 778888888888888777444
No 247
>2xq1_A Peroxisomal catalase; oxidoreductase, hydrogen peroxide detoxification, PTS1; HET: HEM; 2.90A {Pichia angusta}
Probab=97.81 E-value=5e-06 Score=95.46 Aligned_cols=99 Identities=39% Similarity=0.552 Sum_probs=83.3
Q ss_pred cccCCCCCCCCccccccccC----------CCCCCCCcchhhhhccccccCCCCccchhcccCCCCccccccchhhhccC
Q psy15197 92 VDTTSAGNPVDSETIIKTIG----------PHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFEDRETIIKTI 161 (902)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (902)
..||.+|.|+...+--++++ +.||++++|..++++|.||++|.+|+|++|+++.|++|+|..+..+-
T Consensus 8 ~~tt~~G~pv~~~~~s~~~g~~~~~~~~~~~~Gp~ll~D~~l~ekl~~f~reripeR~vHAKG~ga~G~F~vt~dis--- 84 (509)
T 2xq1_A 8 VFTTSQGCPVSDPFTTQRIPLDSTGYKYAPPIGPLLLQDFKLIDTLSHFDRERIPERVVHAKGAGAYGVFEVTDDIT--- 84 (509)
T ss_dssp BCBCTTCCBCSCTTCEEECCBCCTTCSSCCCCCCBBTTCHHHHHHHHHHTTCCCCCCSSCCSEEEEEEEEEECSCCT---
T ss_pred ccccCCCcccCCCccceecccccccccccCCCCCcccccHHHHHHHHhhcCCCCCCccccCCcceeEEEEEECCchh---
Confidence 35889999999999999999 99999999999999999999999999999999999999999655442
Q ss_pred CCCCCCCCcccccccccccccCCCCcccccccCCCCccccce
Q psy15197 162 GPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFE 203 (902)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (902)
.|.-..+|...|+..|-.++.+.+.|..+..+
T Consensus 85 ----------~~t~A~~F~~~Gk~tpv~vRFStv~G~~gs~D 116 (509)
T 2xq1_A 85 ----------DVCSAKFLDTVGKKTRIFTRFSTVGGEKGSAD 116 (509)
T ss_dssp ----------TTCCCGGGSSTTCEEEEEEEEECSSCCTTSCT
T ss_pred ----------HhhhchhccCCCceeeEEEEeecCCCCCCCCC
Confidence 24445566666778888888888888777444
No 248
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.78 E-value=0.00016 Score=82.46 Aligned_cols=93 Identities=19% Similarity=0.239 Sum_probs=54.1
Q ss_pred CeEEEEEeCCCccc------hHHHHHHHHH--HcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecC
Q psy15197 250 TKYITLLDAPGHKD------FIPNMITGAT--QADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKL 321 (902)
Q Consensus 250 ~~~i~lIDTPG~~d------f~~~~~~~l~--~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKi 321 (902)
++.+.||||||... +..+...... .+|.++||+|+..+ ............. ++...|++||+
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~g---------q~a~~~a~~f~~~-~~~~gVIlTKl 248 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIG---------QKAYDLASRFHQA-SPIGSVIITKM 248 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGG---------GGGHHHHHHHHHH-CSSEEEEEECG
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccc---------hHHHHHHHHHhcc-cCCcEEEEecc
Confidence 56788999999533 4444433222 46999999999876 1233333333322 22345899999
Q ss_pred CCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 322 DTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 322 Dl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
|..... ..... .....+. |+.+++. |++++.
T Consensus 249 D~~a~~----G~als----~~~~~g~-----Pi~fig~--Ge~v~d 279 (433)
T 3kl4_A 249 DGTAKG----GGALS----AVVATGA-----TIKFIGT--GEKIDE 279 (433)
T ss_dssp GGCSCH----HHHHH----HHHHHTC-----EEEEEEC--CSSSSC
T ss_pred cccccc----hHHHH----HHHHHCC-----CEEEEEC--CCChHh
Confidence 975311 11111 1112233 8888875 888865
No 249
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.77 E-value=2.9e-05 Score=83.80 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=23.0
Q ss_pred CcceEEEEEecCCCChhHHHhHHHHh
Q psy15197 24 KGRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 24 ~~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
+..++|+++|.+|+|||||+|+|+..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~ 143 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKK 143 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCceEEEEecCCCchHHHHHHHhcC
Confidence 45689999999999999999999843
No 250
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=97.76 E-value=1.3e-05 Score=89.37 Aligned_cols=48 Identities=17% Similarity=0.184 Sum_probs=37.6
Q ss_pred EEeeeEEEEEE------CCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECC
Q psy15197 238 TMDVGQSQFET------KTKYITLLDAPGHKDFIPNMITGATQADVALLVVDAT 285 (902)
Q Consensus 238 Tid~~~~~~~~------~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~ 285 (902)
|..+....+.. +...+.||||+|+++|...+..+++.++++|+|+|.+
T Consensus 164 T~Gi~e~~f~~~~~~~~~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis 217 (354)
T 2xtz_A 164 TTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAIS 217 (354)
T ss_dssp CCSEEEEEECCCCE------EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGG
T ss_pred ccceeeEEEEeccCccccceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECc
Confidence 43444444544 3578999999999999999999999999999999987
No 251
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.64 E-value=2.6e-05 Score=92.17 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=22.8
Q ss_pred CcceEEEEEecCCCChhHHHhHHHHh
Q psy15197 24 KGRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 24 ~~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
...+.|+|+|.+|+|||||+|+|++.
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~ 61 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGK 61 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCC
Confidence 45678999999999999999999744
No 252
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.60 E-value=0.00013 Score=79.24 Aligned_cols=94 Identities=19% Similarity=0.197 Sum_probs=55.7
Q ss_pred CCeEEEEEeCCCccc--hHHHHH------HHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEec
Q psy15197 249 KTKYITLLDAPGHKD--FIPNMI------TGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINK 320 (902)
Q Consensus 249 ~~~~i~lIDTPG~~d--f~~~~~------~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNK 320 (902)
.++.+.||||||... ...... ..+..+|.+++|+|+..+ ......+..... ..+...+|+||
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---------~~~~~~~~~~~~-~~~i~gvVlnk 248 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---------QKAYDLASKFNQ-ASKIGTIIITK 248 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---------GGHHHHHHHHHH-TCTTEEEEEEC
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---------HHHHHHHHHHHh-hCCCCEEEEeC
Confidence 367899999999776 322222 244579999999999754 123333333333 34545589999
Q ss_pred CCCCCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 321 LDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 321 iDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+|.... ...+ .......+. |+.+++ .|++++.
T Consensus 249 ~D~~~~----~g~~----~~~~~~~~~-----pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 249 MDGTAK----GGGA----LSAVAATGA-----TIKFIG--TGEKIDE 280 (297)
T ss_dssp GGGCTT----HHHH----HHHHHTTTC-----CEEEEE--CSSSTTC
T ss_pred CCCCcc----hHHH----HHHHHHHCc-----CEEEEe--CCCChhh
Confidence 996531 1111 122333333 777765 6788765
No 253
>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3
Probab=97.55 E-value=1.1e-05 Score=96.80 Aligned_cols=98 Identities=31% Similarity=0.395 Sum_probs=84.0
Q ss_pred ccCCCCCCCCccccccccCC---CCCCCCcchhhhhccccccCCCCccchhcccCCCCccccccchhhhccCCCCCCCCC
Q psy15197 93 DTTSAGNPVDSETIIKTIGP---HGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFEDRETIIKTIGPHGPVPL 169 (902)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (902)
.||.+|.|+...+--++.++ .||+++||+.++++|-||++|.||+|++|+++.|++|+|..+..+-
T Consensus 20 ~t~~~g~p~~~~~~s~~~g~~~~~gp~ll~d~~~~ek~~hf~reripeR~vHAKG~ga~G~F~v~~d~~----------- 88 (715)
T 1sy7_A 20 LTTDYGVKQTTADDWLRIVSDDKIGPSLLEDPFARERIMRFDHERIPERVVHARGSGAFGKFKVYESAS----------- 88 (715)
T ss_dssp CBCTTSCBCSCSSCCCEEECSSCEEEECTTCHHHHHHHHHHHTCCCCCCSSSCSEEEEEEEEEESSCCT-----------
T ss_pred cccCCCcccCCCCceeccCCCCCCCchhHHHHHHHHHHhhhccCCCCccccCCCceeEEEEEEECCCch-----------
Confidence 58899999999999999999 9999999999999999999999999999999999999999655442
Q ss_pred cccccccccccccCCCCcccccccCCCCccccce
Q psy15197 170 EDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFE 203 (902)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (902)
.|.-..+|...|++.|-.++.+-+.|..+..+
T Consensus 89 --~~t~a~~f~~~Gk~tpv~vRFStv~g~~gs~D 120 (715)
T 1sy7_A 89 --DLTMAPVLTDTSRETPVFVRFSTVLGSRGSAD 120 (715)
T ss_dssp --TTCCCGGGTCSSCCEEEEEEEECSSSCTTSCT
T ss_pred --HhhhchhhcCCCceEEEEEEeccCCCCCCCCc
Confidence 24455667667888899888998888877443
No 254
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.45 E-value=4.5e-05 Score=81.47 Aligned_cols=85 Identities=15% Similarity=0.124 Sum_probs=53.9
Q ss_pred CCccc-hHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHH
Q psy15197 259 PGHKD-FIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTK 337 (902)
Q Consensus 259 PG~~d-f~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~ 337 (902)
|||.. ..+.+...+..+|++|.|+|+..+.... ..... ++ + ++.|+|+||+|+++ ....+ .
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~----~~~l~----ll---~-k~~iivlNK~DL~~--~~~~~----~ 66 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATS----AYGVD----FS---R-KETIILLNKVDIAD--EKTTK----K 66 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTS----CTTSC----CT---T-SEEEEEEECGGGSC--HHHHH----H
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCc----ChHHH----hc---C-CCcEEEEECccCCC--HHHHH----H
Confidence 88875 5568888999999999999999874321 11111 12 4 45679999999986 22222 2
Q ss_pred HHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 338 LGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 338 l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
...+++..++ ++ ++||++|.|+.+
T Consensus 67 ~~~~~~~~g~-----~v-~iSa~~~~gi~~ 90 (262)
T 3cnl_A 67 WVEFFKKQGK-----RV-ITTHKGEPRKVL 90 (262)
T ss_dssp HHHHHHHTTC-----CE-EECCTTSCHHHH
T ss_pred HHHHHHHcCC-----eE-EEECCCCcCHHH
Confidence 2334444444 67 899999999887
No 255
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.45 E-value=0.00015 Score=78.85 Aligned_cols=85 Identities=18% Similarity=0.252 Sum_probs=54.8
Q ss_pred HHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCC
Q psy15197 270 TGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRD 349 (902)
Q Consensus 270 ~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~ 349 (902)
..++.+|++|+|+|++++.+. . ......+..+...+++ +|+|+||+|+.+. .... ..++....++..++
T Consensus 75 ~~~~naD~vliV~d~~~p~~s----~-~~l~~~l~~~~~~~~~-~ilV~NK~DL~~~--~~v~-~~~~~~~~~~~~g~-- 143 (302)
T 2yv5_A 75 PKVANVDRVIIVETLKMPEFN----N-YLLDNMLVVYEYFKVE-PVIVFNKIDLLNE--EEKK-ELERWISIYRDAGY-- 143 (302)
T ss_dssp TEEESCCEEEEEECSTTTTCC----H-HHHHHHHHHHHHTTCE-EEEEECCGGGCCH--HHHH-HHHHHHHHHHHTTC--
T ss_pred HHHHhcCEEEEEEECCCCCCC----H-HHHHHHHHHHHhCCCC-EEEEEEcccCCCc--cccH-HHHHHHHHHHHCCC--
Confidence 357889999999999876321 1 1223344445556666 5699999999752 1111 12233344444454
Q ss_pred CCceEecCCCccCCCCCCC
Q psy15197 350 SDIEYVPCSGLTGENLTTP 368 (902)
Q Consensus 350 ~~~~ii~iSA~~G~gI~~~ 368 (902)
+++++||++|.|++++
T Consensus 144 ---~~~~~SA~~g~gi~~L 159 (302)
T 2yv5_A 144 ---DVLKVSAKTGEGIDEL 159 (302)
T ss_dssp ---EEEECCTTTCTTHHHH
T ss_pred ---eEEEEECCCCCCHHHH
Confidence 8899999999999883
No 256
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.44 E-value=0.00012 Score=82.09 Aligned_cols=102 Identities=14% Similarity=0.114 Sum_probs=60.3
Q ss_pred EEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHHHH
Q psy15197 252 YITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRF 331 (902)
Q Consensus 252 ~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~~ 331 (902)
.+.-++++ +++|.+........++++|+|+|+++.... +..... ...+.+++|+|+||+|+.+.+. ..
T Consensus 50 ~~~~v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~~s----~~~~l~------~~l~~~piilV~NK~DLl~~~~-~~ 117 (369)
T 3ec1_A 50 EVQDVPLD-DDDFLSMLHRIGESKALVVNIVDIFDFNGS----FIPGLP------RFAADNPILLVGNKADLLPRSV-KY 117 (369)
T ss_dssp ----------CHHHHHHHHHHHHCCEEEEEEETTCSGGG----CCSSHH------HHCTTSCEEEEEECGGGSCTTC-CH
T ss_pred cccCCcCC-HHHHHHHHHHhhccCcEEEEEEECCCCCCc----hhhHHH------HHhCCCCEEEEEEChhcCCCcc-CH
Confidence 34445554 677888777777899999999999976321 111111 1123355779999999975321 11
Q ss_pred HHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 332 QEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 332 ~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
+.+.+.+...++..++. ..+++++||++|.|+.+
T Consensus 118 ~~~~~~l~~~~~~~g~~--~~~v~~iSA~~g~gi~~ 151 (369)
T 3ec1_A 118 PKLLRWMRRMAEELGLC--PVDVCLVSAAKGIGMAK 151 (369)
T ss_dssp HHHHHHHHHHHHTTTCC--CSEEEECBTTTTBTHHH
T ss_pred HHHHHHHHHHHHHcCCC--cccEEEEECCCCCCHHH
Confidence 23333444445555552 12689999999999998
No 257
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.37 E-value=0.00016 Score=81.01 Aligned_cols=102 Identities=20% Similarity=0.190 Sum_probs=64.1
Q ss_pred ccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHH
Q psy15197 261 HKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGA 340 (902)
Q Consensus 261 ~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~ 340 (902)
.++|.+......+.+|++|+|+|+++... .....+ ....+..++|+|+||+|+.+... ..+.+.+.+..
T Consensus 56 ~e~f~~~l~~i~~~~~~il~VvD~~d~~~--------~~~~~l--~~~~~~~p~ilV~NK~DL~~~~~-~~~~~~~~l~~ 124 (368)
T 3h2y_A 56 DDDFLRILNGIGKSDALVVKIVDIFDFNG--------SWLPGL--HRFVGNNKVLLVGNKADLIPKSV-KHDKVKHWMRY 124 (368)
T ss_dssp CHHHHHHHHHHHHSCCEEEEEEETTSHHH--------HCCTTH--HHHSSSSCEEEEEECGGGSCTTS-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCcEEEEEEECCCCcc--------cHHHHH--HHHhCCCcEEEEEEChhcCCccc-CHHHHHHHHHH
Confidence 45687777777778889999999986411 111111 11123345779999999975221 12223333344
Q ss_pred hhhhcCCCCCCceEecCCCccCCCCCCCCCCcccccccCcccHHHHHHhc
Q psy15197 341 FLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNF 390 (902)
Q Consensus 341 ~l~~~~~~~~~~~ii~iSA~~G~gI~~~~~~~~~~~w~~g~~Lle~L~~l 390 (902)
.++..++. ..+++.+||++|.|+.+ |.+.|..+
T Consensus 125 ~~~~~g~~--~~~v~~iSA~~g~gi~~---------------L~~~l~~~ 157 (368)
T 3h2y_A 125 SAKQLGLK--PEDVFLISAAKGQGIAE---------------LADAIEYY 157 (368)
T ss_dssp HHHHTTCC--CSEEEECCTTTCTTHHH---------------HHHHHHHH
T ss_pred HHHHcCCC--cccEEEEeCCCCcCHHH---------------HHhhhhhh
Confidence 45555552 13689999999999998 77777654
No 258
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.13 E-value=0.00025 Score=72.72 Aligned_cols=93 Identities=13% Similarity=0.024 Sum_probs=54.7
Q ss_pred CccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHH----HHHHH----hCCCeEEEEEecC-CCCCchHHH
Q psy15197 260 GHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHA----LLVRS----LGVNQLGVVINKL-DTVSWSQDR 330 (902)
Q Consensus 260 G~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l----~~l~~----~~i~~iIVviNKi-Dl~~~~~~~ 330 (902)
|+.++...+..++..+|++|+|||+++... . ..++.+ .++.. .++ +++|+.||. |+...- .
T Consensus 111 GQ~klRplWr~Yy~~TdglIfVVDSsD~~R-----~--eak~EL~eL~~mL~ee~~L~ga-pLLVlANKqqDlp~Am--s 180 (227)
T 3l82_B 111 SRYSVIPQIQKVCEVVDGFIYVANAEAHKR-----H--EWQDEFSHIMAMTDPAFGSSGR-PLLVLSCISQGDVKRM--P 180 (227)
T ss_dssp ------CCHHHHHHHCSEEEEEEECBTTCC-----C--CHHHHHHHHHHHSCTTSSCSCS-CEEEEEEESSTTSCBC--C
T ss_pred cHHHHHHHHHHHhcCCCEEEEEeccccHhH-----H--HHHHHHHHHHHHhcchhhhCCC-eEEEEeCCCcCccCCC--C
Confidence 777788889999999999999999987632 1 122222 22222 234 477889995 776421 1
Q ss_pred HHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 331 FQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 331 ~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
..++.+.+. |..+ . ..+.|.+|||++|+|+.+
T Consensus 181 ~~EI~e~L~--L~~l--~-R~W~Iq~csA~TGeGL~E 212 (227)
T 3l82_B 181 CFYLAHELH--LNLL--N-HPWLVQDTEAETLTGFLN 212 (227)
T ss_dssp HHHHHHHTT--GGGG--C-SCEEEEEEETTTCTTHHH
T ss_pred HHHHHHHcC--CcCC--C-CCEEEEEeECCCCcCHHH
Confidence 223333321 2222 2 467899999999999888
No 259
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.09 E-value=0.00017 Score=76.93 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=21.1
Q ss_pred eEEEEEecCCCChhHHHhHHHHh
Q psy15197 27 LHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 27 ~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
++|+++|.+|+|||||+|+|+..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~ 122 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGK 122 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred hheEEeCCCCCCHHHHHHHHhcc
Confidence 69999999999999999999843
No 260
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.03 E-value=0.00074 Score=77.17 Aligned_cols=66 Identities=26% Similarity=0.320 Sum_probs=39.7
Q ss_pred CCeEEEEEeCCCccchHHHHHHH------HHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCC
Q psy15197 249 KTKYITLLDAPGHKDFIPNMITG------ATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLD 322 (902)
Q Consensus 249 ~~~~i~lIDTPG~~df~~~~~~~------l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiD 322 (902)
.++.+.||||||...+....... +..+|.+++|+|+..+. .....+..... .++..-||+||+|
T Consensus 182 ~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~---------~~~~~~~~f~~-~l~i~gvVlnK~D 251 (433)
T 2xxa_A 182 KFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ---------DAANTAKAFNE-ALPLTGVVLTKVD 251 (433)
T ss_dssp TTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT---------THHHHHHHHHH-HSCCCCEEEECTT
T ss_pred CCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH---------HHHHHHHHHhc-cCCCeEEEEecCC
Confidence 36789999999976543333222 33688999999998651 22222222221 2232236899999
Q ss_pred CC
Q psy15197 323 TV 324 (902)
Q Consensus 323 l~ 324 (902)
..
T Consensus 252 ~~ 253 (433)
T 2xxa_A 252 GD 253 (433)
T ss_dssp SS
T ss_pred CC
Confidence 75
No 261
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.00 E-value=0.00064 Score=74.12 Aligned_cols=85 Identities=16% Similarity=0.243 Sum_probs=54.9
Q ss_pred HHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCC
Q psy15197 271 GATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDS 350 (902)
Q Consensus 271 ~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~ 350 (902)
.+..+|.+++|+|+..+.+. . ....+.+..+...++++ |+|+||+|+.+... ..+..+.+...++..|+
T Consensus 83 ~~anvD~v~~V~~~~~p~~~----~-~~i~r~L~~~~~~~~~~-vivlnK~DL~~~~~--~~~~~~~~~~~y~~~g~--- 151 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFS----T-ALLDRFLVLVEANDIQP-IICITKMDLIEDQD--TEDTIQAYAEDYRNIGY--- 151 (307)
T ss_dssp TEECCCEEEEEEESTTTTCC----H-HHHHHHHHHHHTTTCEE-EEEEECGGGCCCHH--HHHHHHHHHHHHHHHTC---
T ss_pred HHHhCCEEEEEEeCCCCCCC----H-HHHHHHHHHHHHCCCCE-EEEEECCccCchhh--hHHHHHHHHHHHHhCCC---
Confidence 47789999999999977542 1 12222333334457665 59999999986321 11122334445555565
Q ss_pred CceEecCCCccCCCCCCC
Q psy15197 351 DIEYVPCSGLTGENLTTP 368 (902)
Q Consensus 351 ~~~ii~iSA~~G~gI~~~ 368 (902)
+++.+||++|.|++++
T Consensus 152 --~v~~~sa~~~~g~~~L 167 (307)
T 1t9h_A 152 --DVYLTSSKDQDSLADI 167 (307)
T ss_dssp --CEEECCHHHHTTCTTT
T ss_pred --eEEEEecCCCCCHHHH
Confidence 7899999999999873
No 262
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.90 E-value=0.0031 Score=69.37 Aligned_cols=91 Identities=18% Similarity=0.314 Sum_probs=51.8
Q ss_pred eEEEEEeCCCccc----hHHHHHH--HHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHH-HhCCCeEEEEEecCCC
Q psy15197 251 KYITLLDAPGHKD----FIPNMIT--GATQADVALLVVDATRGEFETGFESGGQTREHALLVR-SLGVNQLGVVINKLDT 323 (902)
Q Consensus 251 ~~i~lIDTPG~~d----f~~~~~~--~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~-~~~i~~iIVviNKiDl 323 (902)
+.+.++||+|... +...... ..-.+|-.++++|+..+ .+....+..+. ..++. ++++||+|-
T Consensus 212 ~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~---------~~~~~~~~~~~~~~~it--~iilTKlD~ 280 (328)
T 3e70_C 212 IDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG---------NAIVEQARQFNEAVKID--GIILTKLDA 280 (328)
T ss_dssp CSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT---------THHHHHHHHHHHHSCCC--EEEEECGGG
T ss_pred chhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH---------HHHHHHHHHHHHhcCCC--EEEEeCcCC
Confidence 3466899999743 3332221 12247999999998765 23344444333 34543 488999996
Q ss_pred CCchHHHHHHHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 324 VSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 324 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
...- ..+. ..+...+. |+.+++ +|++++.
T Consensus 281 ~a~~----G~~l----~~~~~~~~-----pi~~i~--~Ge~v~d 309 (328)
T 3e70_C 281 DARG----GAAL----SISYVIDA-----PILFVG--VGQGYDD 309 (328)
T ss_dssp CSCC----HHHH----HHHHHHTC-----CEEEEE--CSSSTTC
T ss_pred ccch----hHHH----HHHHHHCC-----CEEEEe--CCCCccc
Confidence 3211 1111 12223333 788877 7888865
No 263
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.81 E-value=0.0017 Score=77.45 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=19.5
Q ss_pred EEEEEecCCCChhHHHhHHHH
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLY 48 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~ 48 (902)
.|||||+.|||||||+++|++
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~G 67 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSG 67 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHS
T ss_pred eEEEECCCCChHHHHHHHHhC
Confidence 499999999999999999974
No 264
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=96.76 E-value=0.0011 Score=71.28 Aligned_cols=97 Identities=13% Similarity=0.006 Sum_probs=59.6
Q ss_pred CCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhh-HHHHHHHHH----hCCCeEEEEEec-CCCCCchHHHHH
Q psy15197 259 PGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQT-REHALLVRS----LGVNQLGVVINK-LDTVSWSQDRFQ 332 (902)
Q Consensus 259 PG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt-~~~l~~l~~----~~i~~iIVviNK-iDl~~~~~~~~~ 332 (902)
.|+.++...+..+...+|++|+|||+++... ++ .... .+...++.. .+++ ++|+.|| .|+...-. ..
T Consensus 195 GGQ~~lRplWr~Yy~~tdglIfVVDSsDreR---le-ak~EL~eL~~mL~e~~~l~~ap-LLVfANKkQDlp~Ams--~~ 267 (312)
T 3l2o_B 195 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKR---HE-WQDEFSHIMAMTDPAFGSSGRP-LLVLSCISQGDVKRMP--CF 267 (312)
T ss_dssp --CCCCCHHHHHHHHHCSEEEECCBCBTTCC---CC-HHHHHHHHHHHHCHHHHCTTCC-EEEEEEESSTTSCBCC--HH
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEecCCcHhH---HH-HHHHHHHHHHHhcchhhcCCCe-EEEEeCCcccccCCCC--HH
Confidence 4778888899999999999999999987632 11 1111 111123321 2555 7788897 58864211 22
Q ss_pred HHHHHHHHhhhhcCCCCCCceEecCCCccCCCCCC
Q psy15197 333 EIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 367 (902)
Q Consensus 333 ~i~~~l~~~l~~~~~~~~~~~ii~iSA~~G~gI~~ 367 (902)
++.+.+. |..+ . ..+.|.++||++|+|+.+
T Consensus 268 EI~e~L~--L~~l--~-r~W~Iq~csA~tGeGL~E 297 (312)
T 3l2o_B 268 YLAHELH--LNLL--N-HPWLVQDTEAETLTGFLN 297 (312)
T ss_dssp HHHHHTT--GGGG--C-SCEEEEEEETTTCTTHHH
T ss_pred HHHHHcC--CccC--C-CcEEEEecccCCCcCHHH
Confidence 3333321 1222 2 457899999999999998
No 265
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=96.64 E-value=0.0013 Score=58.95 Aligned_cols=80 Identities=19% Similarity=0.244 Sum_probs=69.8
Q ss_pred eEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCcEE---EEEEEEEceEeeeeeccCCeEEEeeeccccccceee
Q psy15197 402 RMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVT---TVKAVYVDEMSVSAAYAGDNVSVTLLNYDQQNVSVG 478 (902)
Q Consensus 402 ~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~---~V~sI~~~~~~v~~a~aGdiv~I~l~~~~~~~i~kG 478 (902)
.+.|.++|+++..|+|+..+|.+|.|+.+..+.+...+... ++.|+......++++.+|.-++|.+.++ .+++.|
T Consensus 8 ~AeVr~vF~isk~g~IAGc~V~~G~i~r~~~vRv~Rd~~vI~eG~i~SLkr~KddV~EV~~G~ECGi~l~~~--~dik~G 85 (99)
T 1d1n_A 8 QAEVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLKRYKDDVREVAQGYECGLTIKNF--NDIKEG 85 (99)
T ss_dssp EEEECCCCCCSSSCCCEEEEECSSBCCSSSEEEEECSSSEEEEEECSEEECSSSCCSCCBTTCEEEEECTTC--SSCSSC
T ss_pred EEEEEEEEEcCCceEEEEEEEEcCEEEcCCeEEEEECCEEEEEeEEhhhcccccccceECCCcEEEEEEcCc--CCCCCC
Confidence 35677889999999999999999999999999999998754 5678888899999999999999999766 489999
Q ss_pred ccccC
Q psy15197 479 FLLSE 483 (902)
Q Consensus 479 ~vL~~ 483 (902)
++|..
T Consensus 86 D~Ie~ 90 (99)
T 1d1n_A 86 DVIEA 90 (99)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 98853
No 266
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.64 E-value=0.0042 Score=71.69 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=20.7
Q ss_pred ceEEEEEecCCCChhHHHhHHHHh
Q psy15197 26 RLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 26 ~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.--|+|+|..|||||||++.|.+.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHH
Confidence 346999999999999999999754
No 267
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=96.26 E-value=0.013 Score=66.86 Aligned_cols=24 Identities=33% Similarity=0.427 Sum_probs=21.3
Q ss_pred ceEEEEEecCCCChhHHHhHHHHh
Q psy15197 26 RLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 26 ~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
---|+|+|.+++|||||+|+|++.
T Consensus 67 v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 67 VVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHhhh
Confidence 346999999999999999999865
No 268
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=96.16 E-value=0.0061 Score=56.48 Aligned_cols=81 Identities=14% Similarity=0.128 Sum_probs=69.1
Q ss_pred eEEEeeEEeeCCCeE---EEEEEEEeeEeeCCCEEEEccCCcEE---EEEEEEEceEeeeeeccCCeEEEeeeccccccc
Q psy15197 402 RMSVSDIYKSTGSGY---CIAGRVETGVILAGEKVMVQPQNEVT---TVKAVYVDEMSVSAAYAGDNVSVTLLNYDQQNV 475 (902)
Q Consensus 402 ~~~I~~i~~v~g~G~---V~~GrV~sG~Lk~Gd~v~l~p~~~~~---~V~sI~~~~~~v~~a~aGdiv~I~l~~~~~~~i 475 (902)
.+.|.++|+++..|+ |+..+|..|.|+.+..+.+...+... ++.|+..+...++++.+|.-|+|.+.+++ .++
T Consensus 12 ~AeVr~vF~isk~g~~~~IAGC~V~~G~i~r~~~vRviRdg~vI~eG~i~SLkrfKdDVkEV~~G~ECGi~l~~fn-iDi 90 (120)
T 2crv_A 12 EASILATFTVTEGKKKIPVADCRVQKGQLERHKKFKLIRNGQVIWKGSLTSLKHHKDDISVIKTGMDCGLSLDEEK-VEF 90 (120)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEESCEETTSCEEEEETTEEEEEECCSEEESSSSCCSEECTTCEEEEECSCTT-SCC
T ss_pred EEEEeEEEEeCCCCceeEEeEEEEEcCEEEcCCeEEEEECCEEEEEeEehhhcccccccceecCCCEEEEEEccCC-CCC
Confidence 456788899888888 99999999999999999999988754 46678888999999999999999987653 278
Q ss_pred eeeccccC
Q psy15197 476 SVGFLLSE 483 (902)
Q Consensus 476 ~kG~vL~~ 483 (902)
+.|++|..
T Consensus 91 k~GDiIE~ 98 (120)
T 2crv_A 91 KPGDQVIC 98 (120)
T ss_dssp CTTEEEEE
T ss_pred CCCCEEEE
Confidence 99998854
No 269
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.88 E-value=0.012 Score=66.78 Aligned_cols=64 Identities=28% Similarity=0.423 Sum_probs=37.9
Q ss_pred CeEEEEEeCCCccch----HHHHH--HHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHH-HhCCCeEEEEEecCC
Q psy15197 250 TKYITLLDAPGHKDF----IPNMI--TGATQADVALLVVDATRGEFETGFESGGQTREHALLVR-SLGVNQLGVVINKLD 322 (902)
Q Consensus 250 ~~~i~lIDTPG~~df----~~~~~--~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~-~~~i~~iIVviNKiD 322 (902)
++.+.||||||.... ..... ..+..+|.++||+|+..+ ......+.... ..++ .-||+||+|
T Consensus 180 ~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg---------q~av~~a~~f~~~l~i--~GVIlTKlD 248 (425)
T 2ffh_A 180 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG---------QEALSVARAFDEKVGV--TGLVLTKLD 248 (425)
T ss_dssp TCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT---------THHHHHHHHHHHHTCC--CEEEEESGG
T ss_pred CCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch---------HHHHHHHHHHHhcCCc--eEEEEeCcC
Confidence 567899999996532 22221 122358999999999755 12222222222 2333 347899999
Q ss_pred CC
Q psy15197 323 TV 324 (902)
Q Consensus 323 l~ 324 (902)
..
T Consensus 249 ~~ 250 (425)
T 2ffh_A 249 GD 250 (425)
T ss_dssp GC
T ss_pred Cc
Confidence 64
No 270
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=95.88 E-value=0.017 Score=67.10 Aligned_cols=95 Identities=18% Similarity=0.202 Sum_probs=75.9
Q ss_pred HHhcCCCCCCCCCCceEEEeeEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCc---EEEEEEEEEceEeeeeeccCCeE
Q psy15197 387 IDNFKTPSRPLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNE---VTTVKAVYVDEMSVSAAYAGDNV 463 (902)
Q Consensus 387 L~~l~~p~~~~~~pl~~~I~~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~---~~~V~sI~~~~~~v~~a~aGdiv 463 (902)
+..+++|.....---...|..+|+.+..|.|+..+|..|.|+.|..+.+...+. ..++.|+..++..++++..|.-|
T Consensus 395 ~~~~~~~~~~~~~~g~a~v~~~f~~~~~~~iaG~~v~~G~~~~~~~~~~~r~~~~i~~g~i~sl~~~k~~v~e~~~g~ec 474 (501)
T 1zo1_I 395 MSGMLSPELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVRNGMEC 474 (501)
T ss_dssp HTTTSSTTCCCCCCCCEEEEECSSCCCSSCEEEEEEEEEEEETTCEEECCSSSCCCEEEEBCCEEETTEEESEEETTCCE
T ss_pred HHhhcCceeeeeeeeEEEEEEEEecCCCCEEEEEEEEeCEEecCCeEEEEeCCeEEEEEEEehhcccCccccEECCCCEE
Confidence 344445443333334456778999888999999999999999999999988775 45788899999999999999999
Q ss_pred EEeeeccccccceeeccccC
Q psy15197 464 SVTLLNYDQQNVSVGFLLSE 483 (902)
Q Consensus 464 ~I~l~~~~~~~i~kG~vL~~ 483 (902)
+|.+.+++ +++.|++|..
T Consensus 475 gi~~~~~~--~~~~gd~~~~ 492 (501)
T 1zo1_I 475 GIGVKNYN--DVRTGDVIEV 492 (501)
T ss_dssp EEEBCCCT--TCCTTCEEEE
T ss_pred EEEEcCcC--CCCCCCEEEE
Confidence 99997664 8899998854
No 271
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.87 E-value=0.013 Score=65.11 Aligned_cols=81 Identities=20% Similarity=0.256 Sum_probs=49.5
Q ss_pred HHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHhhhhcCCCCCC
Q psy15197 272 ATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSD 351 (902)
Q Consensus 272 l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~~~~~~~~~~i~~~l~~~l~~~~~~~~~ 351 (902)
+..+|.+++| |+..+.+. . ....+.+..+...++++ |+|+||+|+++. +.. +..++....++..|+
T Consensus 128 ~anvD~v~iv-~a~~P~~~----~-~~i~r~L~~a~~~~~~~-iivlNK~DL~~~--~~~-~~~~~~~~~y~~~G~---- 193 (358)
T 2rcn_A 128 AANIDQIVIV-SAILPELS----L-NIIDRYLVGCETLQVEP-LIVLNKIDLLDD--EGM-DFVNEQMDIYRNIGY---- 193 (358)
T ss_dssp EECCCEEEEE-EESTTTCC----H-HHHHHHHHHHHHHTCEE-EEEEECGGGCCH--HHH-HHHHHHHHHHHTTTC----
T ss_pred HhcCCEEEEE-EeCCCCCC----H-HHHHHHHHHHHhcCCCE-EEEEECccCCCc--hhH-HHHHHHHHHHHhCCC----
Confidence 4678999876 45444321 1 12233334445567775 599999999862 211 112233344555666
Q ss_pred ceEecCCCccCCCCCC
Q psy15197 352 IEYVPCSGLTGENLTT 367 (902)
Q Consensus 352 ~~ii~iSA~~G~gI~~ 367 (902)
+++++||.+|.|+..
T Consensus 194 -~v~~~Sa~~~~gl~~ 208 (358)
T 2rcn_A 194 -RVLMVSSHTQDGLKP 208 (358)
T ss_dssp -CEEECBTTTTBTHHH
T ss_pred -cEEEEecCCCcCHHH
Confidence 789999999999887
No 272
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.73 E-value=0.02 Score=62.28 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=20.3
Q ss_pred eEEEEEecCCCChhHHHhHHHHh
Q psy15197 27 LHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 27 ~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
--|+|+|.+|+||||++..|...
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHHH
Confidence 46899999999999999999754
No 273
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.89 E-value=0.015 Score=59.07 Aligned_cols=27 Identities=33% Similarity=0.361 Sum_probs=23.2
Q ss_pred CCcceEEEEEecCCCChhHHHhHHHHh
Q psy15197 23 GKGRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 23 ~~~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.+....|+|+|++|||||||++.|...
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 355678999999999999999999654
No 274
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.34 E-value=0.02 Score=57.17 Aligned_cols=22 Identities=23% Similarity=0.501 Sum_probs=20.4
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
+++|+|++|||||||++.|+..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999865
No 275
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.18 E-value=0.021 Score=57.75 Aligned_cols=23 Identities=39% Similarity=0.453 Sum_probs=20.6
Q ss_pred eEEEEEecCCCChhHHHhHHHHh
Q psy15197 27 LHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 27 ~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
..++|+|++|||||||++.|+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999754
No 276
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.17 E-value=0.021 Score=56.60 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=20.6
Q ss_pred eEEEEEecCCCChhHHHhHHHHh
Q psy15197 27 LHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 27 ~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
--|+|+|++|||||||++.|+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999999854
No 277
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=94.07 E-value=0.064 Score=62.72 Aligned_cols=97 Identities=13% Similarity=0.046 Sum_probs=76.8
Q ss_pred HHHHHhcCCCCCCCCCCceEEEeeEEeeCC---CeEEEEEEEEeeEeeCCCEEEEccCCcEE---EEEEEEEceEeeeee
Q psy15197 384 LDVIDNFKTPSRPLTKPLRMSVSDIYKSTG---SGYCIAGRVETGVILAGEKVMVQPQNEVT---TVKAVYVDEMSVSAA 457 (902)
Q Consensus 384 le~L~~l~~p~~~~~~pl~~~I~~i~~v~g---~G~V~~GrV~sG~Lk~Gd~v~l~p~~~~~---~V~sI~~~~~~v~~a 457 (902)
.+++..+++|.....-.-.+.|.++|.++. .|.|+..+|..|.|+.|..+.+...+... ++.|+..+...++++
T Consensus 431 ~~~~~~~l~~~~~e~~~g~a~v~~~f~~~~~~~~~~iaG~~v~~G~i~~~~~~r~~r~~~~i~~g~i~slk~~k~~v~ev 510 (537)
T 3izy_P 431 QEELSSRLPCIVEEHPIGEASILATFSITEGKKKVPVAGCRVQKGQIEKQKKFKLIRNGHVIWKGSLISLKHHKDDTSVV 510 (537)
T ss_dssp HHHHSSSSSCSSSCCCSSEEEEEEEESSCSSSCCSCEEEEEECSSEEESSSEEEEESSSSEEEEEECCCCCCSSCCCSEE
T ss_pred HHHHHhccCCceEEEEEEEEEEcCcEEECCCCccCcEEEEEEEeCeEeeCCeEEEecCCEEEEEEEEehhcccCcccceE
Confidence 334455556654444456788889998874 67999999999999999999999988744 455667788999999
Q ss_pred ccCCeEEEeeec-cccccceeecccc
Q psy15197 458 YAGDNVSVTLLN-YDQQNVSVGFLLS 482 (902)
Q Consensus 458 ~aGdiv~I~l~~-~~~~~i~kG~vL~ 482 (902)
..|.-|+|.+.+ + .+++.|++|.
T Consensus 511 ~~g~ecgi~~~~~~--~~~~~gd~ie 534 (537)
T 3izy_P 511 KTGMDCGLSLDEEK--IEFKVGDAII 534 (537)
T ss_dssp ETTCEEEEESSSSC--SSCSCCCEEE
T ss_pred cCCCEEEEEEcCcc--cCCCCCCEEE
Confidence 999999999976 4 3889999874
No 278
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.61 E-value=0.031 Score=56.71 Aligned_cols=23 Identities=30% Similarity=0.260 Sum_probs=20.5
Q ss_pred eEEEEEecCCCChhHHHhHHHHh
Q psy15197 27 LHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 27 ~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
--++|+|+.|||||||+++|...
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999999755
No 279
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.60 E-value=0.031 Score=55.95 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=20.4
Q ss_pred eEEEEEecCCCChhHHHhHHHHh
Q psy15197 27 LHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 27 ~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
--|+|+|+.|||||||++.|...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 35899999999999999999754
No 280
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.53 E-value=0.032 Score=55.59 Aligned_cols=21 Identities=38% Similarity=0.548 Sum_probs=19.4
Q ss_pred EEEEecCCCChhHHHhHHHHh
Q psy15197 29 LVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 29 v~v~G~~~~GKstL~~~ll~~ 49 (902)
|+|+|+.|||||||++.|+..
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999999855
No 281
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=93.51 E-value=0.27 Score=58.30 Aligned_cols=83 Identities=22% Similarity=0.236 Sum_probs=67.8
Q ss_pred CCceEEEe--eEEeeCCCeEEEEEEEEeeEeeCCCEEEEccCCc-EEEEEEEEEceEeeeeeccCCeEEEeeeccc-ccc
Q psy15197 399 KPLRMSVS--DIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNE-VTTVKAVYVDEMSVSAAYAGDNVSVTLLNYD-QQN 474 (902)
Q Consensus 399 ~pl~~~I~--~i~~v~g~G~V~~GrV~sG~Lk~Gd~v~l~p~~~-~~~V~sI~~~~~~v~~a~aGdiv~I~l~~~~-~~~ 474 (902)
.|..+.|. .+|+.+. |.|+..+|..|+|+.|..+.+ +.+. ..++.||..++..++++..|.-|+|.+.+.. -.+
T Consensus 462 ~~~~~~i~~~~~f~~~~-~~i~g~~v~~G~~~~~~~~~~-~~~~~~g~i~sl~~~k~~v~~~~~g~e~gi~~~~~~~~~~ 539 (594)
T 1g7s_A 462 KPASIRLIPKLVFRQSK-PAIGGVEVLTGVIRQGYPLMN-DDGETVGTVESMQDKGENLKSASRGQKVAMAIKDAVYGKT 539 (594)
T ss_dssp CCEEEEEEEEEEEECSS-SEEEEEEEEEEEEETTCEEEC-TTSCEEEEEEEEEETTEEESEEETTCCEEEEEETCCBTTT
T ss_pred eeEEEEEecceEEcCCC-CeEEEEEEecCEEecCCeEEe-cCCcEEEEEehhcccCccccccCCCCEEEEEEeCcccCCC
Confidence 35555555 6888877 899999999999999999998 5553 5688999999999999999999999987643 257
Q ss_pred ceeeccccC
Q psy15197 475 VSVGFLLSE 483 (902)
Q Consensus 475 i~kG~vL~~ 483 (902)
++.|++|..
T Consensus 540 ~~~~d~~~~ 548 (594)
T 1g7s_A 540 IHEGDTLYV 548 (594)
T ss_dssp BCTTCEEEE
T ss_pred CCCCCEEEE
Confidence 888887754
No 282
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.39 E-value=0.075 Score=57.03 Aligned_cols=47 Identities=11% Similarity=0.118 Sum_probs=30.6
Q ss_pred CccchhHHHHHHHH-HHHh----cCCCcceEEEEEecCCCChhHHHhHHHHh
Q psy15197 3 GKVNKDKLKKIEEY-TREQ----AGGKGRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 3 ~~~~~~~~~~~~~~-~~~~----~~~~~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
..++.+.+.++... .... ........|+|+|.+|||||||+..|...
T Consensus 5 ~~~s~~~~~~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 5 VNFTDKQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp TCCCHHHHHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45555555544322 2221 22233567999999999999999999754
No 283
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.25 E-value=0.051 Score=53.79 Aligned_cols=25 Identities=36% Similarity=0.434 Sum_probs=21.4
Q ss_pred CcceEEEEEecCCCChhHHHhHHHH
Q psy15197 24 KGRLHLVVIGHVDAGKSTLMGHLLY 48 (902)
Q Consensus 24 ~~~~~v~v~G~~~~GKstL~~~ll~ 48 (902)
+..-.|+|+|.+|||||||++.|..
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHh
Confidence 3445799999999999999999964
No 284
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.24 E-value=0.077 Score=58.03 Aligned_cols=27 Identities=33% Similarity=0.238 Sum_probs=23.0
Q ss_pred CCcceEEEEEecCCCChhHHHhHHHHh
Q psy15197 23 GKGRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 23 ~~~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.+..+-|+|+|.+|||||||+++|...
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 445678999999999999999998654
No 285
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.23 E-value=0.047 Score=55.47 Aligned_cols=24 Identities=38% Similarity=0.517 Sum_probs=21.1
Q ss_pred ceEEEEEecCCCChhHHHhHHHHh
Q psy15197 26 RLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 26 ~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
..-|+|+|++|||||||+++|+..
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhh
Confidence 346899999999999999999855
No 286
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.21 E-value=0.045 Score=55.09 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=22.4
Q ss_pred CcceEEEEEecCCCChhHHHhHHHHhc
Q psy15197 24 KGRLHLVVIGHVDAGKSTLMGHLLYLM 50 (902)
Q Consensus 24 ~~~~~v~v~G~~~~GKstL~~~ll~~~ 50 (902)
+....|+|+|.+|||||||++.|....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 345679999999999999999997653
No 287
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.20 E-value=0.039 Score=56.66 Aligned_cols=23 Identities=39% Similarity=0.515 Sum_probs=20.4
Q ss_pred eEEEEEecCCCChhHHHhHHHHh
Q psy15197 27 LHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 27 ~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
--++|+|+.|||||||++.|+..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999999754
No 288
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.05 E-value=0.036 Score=54.48 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=18.7
Q ss_pred EEEEEecCCCChhHHHhHHHH
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLY 48 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~ 48 (902)
-++++|++|||||||+++++.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHcc
Confidence 489999999999999998753
No 289
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.00 E-value=0.044 Score=56.55 Aligned_cols=24 Identities=33% Similarity=0.338 Sum_probs=21.0
Q ss_pred ceEEEEEecCCCChhHHHhHHHHh
Q psy15197 26 RLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 26 ~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.--++|+|+.|||||||++.|+..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 346899999999999999999755
No 290
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.79 E-value=0.061 Score=54.27 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=21.7
Q ss_pred cceEEEEEecCCCChhHHHhHHHHh
Q psy15197 25 GRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 25 ~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
....|+|+|+.|||||||++.|...
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999754
No 291
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.76 E-value=0.049 Score=55.29 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=21.1
Q ss_pred ceEEEEEecCCCChhHHHhHHHHh
Q psy15197 26 RLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 26 ~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
..-|+|+|++|||||||++.|+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 446899999999999999999855
No 292
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=92.65 E-value=0.13 Score=51.87 Aligned_cols=40 Identities=25% Similarity=0.251 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhcCCCcceEEEEEecCCCChhHHHhHHHHh
Q psy15197 9 KLKKIEEYTREQAGGKGRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.++++.+..... ......-|+|+|..|||||||++.|...
T Consensus 6 ~~~~l~~~~~~~-~~~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 6 RIDFLCKTILAI-KTAGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp HHHHHHHHHHTS-CCSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-ccCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344444444332 2345578999999999999999999653
No 293
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.58 E-value=0.056 Score=52.84 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=22.2
Q ss_pred CcceEEEEEecCCCChhHHHhHHHHh
Q psy15197 24 KGRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 24 ~~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
+..--++++|+.|||||||++.|...
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 44456999999999999999999765
No 294
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.49 E-value=0.14 Score=53.41 Aligned_cols=27 Identities=22% Similarity=0.145 Sum_probs=23.3
Q ss_pred CcceEEEEEecCCCChhHHHhHHHHhc
Q psy15197 24 KGRLHLVVIGHVDAGKSTLMGHLLYLM 50 (902)
Q Consensus 24 ~~~~~v~v~G~~~~GKstL~~~ll~~~ 50 (902)
+...+|+|+|.+||||||++..|....
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 356899999999999999999997553
No 295
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=92.48 E-value=0.073 Score=52.34 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=21.8
Q ss_pred cceEEEEEecCCCChhHHHhHHHHh
Q psy15197 25 GRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 25 ~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
..-.++++|++|+|||||+.+|...
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3567999999999999999999755
No 296
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.44 E-value=0.048 Score=56.82 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=19.5
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.++|+|+.|||||||++.|.+-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4899999999999999999643
No 297
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.41 E-value=0.06 Score=54.15 Aligned_cols=21 Identities=38% Similarity=0.548 Sum_probs=19.6
Q ss_pred EEEEecCCCChhHHHhHHHHh
Q psy15197 29 LVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 29 v~v~G~~~~GKstL~~~ll~~ 49 (902)
|+|+|++|||||||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 899999999999999999865
No 298
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.38 E-value=0.069 Score=53.42 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=21.0
Q ss_pred ceEEEEEecCCCChhHHHhHHHHh
Q psy15197 26 RLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 26 ~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
...|+|+|++|||||||++.|...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999754
No 299
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.34 E-value=0.054 Score=55.99 Aligned_cols=21 Identities=38% Similarity=0.453 Sum_probs=19.0
Q ss_pred EEEEEecCCCChhHHHhHHHH
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLY 48 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~ 48 (902)
.++|+|+.|||||||++.|.+
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 389999999999999999964
No 300
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=92.28 E-value=0.056 Score=60.00 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=20.1
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.++|+|++|+|||||+|+|+..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcc
Confidence 5899999999999999999854
No 301
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=92.10 E-value=0.074 Score=51.68 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=20.9
Q ss_pred eEEEEEecCCCChhHHHhHHHHhc
Q psy15197 27 LHLVVIGHVDAGKSTLMGHLLYLM 50 (902)
Q Consensus 27 ~~v~v~G~~~~GKstL~~~ll~~~ 50 (902)
..|+|+|.+|||||||++.|....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999997553
No 302
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.04 E-value=0.07 Score=52.89 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=19.2
Q ss_pred EEEEEecCCCChhHHHhHHHH
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLY 48 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~ 48 (902)
.++|+|++|||||||++.|..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 589999999999999999974
No 303
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.04 E-value=0.1 Score=50.95 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=21.0
Q ss_pred ceEEEEEecCCCChhHHHhHHHHh
Q psy15197 26 RLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 26 ~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
...|+|+|.+|||||||++.|...
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 457999999999999999999654
No 304
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=92.01 E-value=0.074 Score=51.18 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=20.1
Q ss_pred eEEEEEecCCCChhHHHhHHHHhc
Q psy15197 27 LHLVVIGHVDAGKSTLMGHLLYLM 50 (902)
Q Consensus 27 ~~v~v~G~~~~GKstL~~~ll~~~ 50 (902)
..|+|+|.+||||||+++.| ...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 36899999999999999999 543
No 305
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.98 E-value=0.065 Score=54.82 Aligned_cols=22 Identities=18% Similarity=0.129 Sum_probs=19.6
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.++|+|+.|||||||++.|...
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999743
No 306
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.96 E-value=0.081 Score=55.02 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=22.3
Q ss_pred ceEEEEEecCCCChhHHHhHHHHhcc
Q psy15197 26 RLHLVVIGHVDAGKSTLMGHLLYLMG 51 (902)
Q Consensus 26 ~~~v~v~G~~~~GKstL~~~ll~~~~ 51 (902)
...|+|+|.+|||||||++.|....|
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999985544
No 307
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=91.94 E-value=0.17 Score=54.50 Aligned_cols=27 Identities=22% Similarity=0.179 Sum_probs=23.1
Q ss_pred CCcceEEEEEecCCCChhHHHhHHHHh
Q psy15197 23 GKGRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 23 ~~~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.+...-|+|+|.+|||||||++.|...
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 445678999999999999999998654
No 308
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=91.91 E-value=0.081 Score=51.07 Aligned_cols=22 Identities=23% Similarity=0.076 Sum_probs=20.0
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.|+|+|.+||||||+++.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999755
No 309
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.87 E-value=0.068 Score=55.94 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=19.6
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.++|+|+.|||||||++.|.+-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999643
No 310
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.83 E-value=0.076 Score=57.65 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=22.1
Q ss_pred CcceEEEEEecCCCChhHHHhHHHHh
Q psy15197 24 KGRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 24 ~~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
+..-.++|+|++|+|||||++.|++.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 34456999999999999999999755
No 311
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=91.83 E-value=0.49 Score=46.97 Aligned_cols=65 Identities=9% Similarity=0.040 Sum_probs=45.9
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhC----CCeEEEEEecCCCC
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLG----VNQLGVVINKLDTV 324 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~----i~~iIVviNKiDl~ 324 (902)
.+.+.|||||+.. ...+...+..+|.+|+++..+.. . ......+..+...+ ..++.+|+||+|..
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~-------~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPL-------D-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTT-------T-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHH-------H-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 4678999999876 34567778889999999988765 2 24455555555443 12346899999954
No 312
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.78 E-value=0.064 Score=55.95 Aligned_cols=22 Identities=41% Similarity=0.625 Sum_probs=19.6
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.++|+|+.|||||||++.|++.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999643
No 313
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=91.77 E-value=0.07 Score=57.71 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=19.6
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.++++|++|+|||||+|+|+ .
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~ 187 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-G 187 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-S
T ss_pred EEEEECCCCCCHHHHHHHHH-H
Confidence 58999999999999999998 5
No 314
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.73 E-value=0.065 Score=55.55 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=19.6
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.++|+|+.|||||||++.|+..
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999643
No 315
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=91.73 E-value=0.08 Score=53.36 Aligned_cols=25 Identities=36% Similarity=0.367 Sum_probs=21.5
Q ss_pred cceEEEEEecCCCChhHHHhHHHHh
Q psy15197 25 GRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 25 ~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
....|+|+|.+|||||||++.|...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3456899999999999999999754
No 316
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.69 E-value=0.066 Score=56.54 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=19.5
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.++|+|+.|||||||++.|.+.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999643
No 317
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.58 E-value=0.066 Score=56.91 Aligned_cols=22 Identities=41% Similarity=0.465 Sum_probs=19.5
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
-++|+|+.|||||||++.|.+-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 3899999999999999999643
No 318
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=91.52 E-value=0.1 Score=52.34 Aligned_cols=27 Identities=30% Similarity=0.261 Sum_probs=22.9
Q ss_pred CCcceEEEEEecCCCChhHHHhHHHHh
Q psy15197 23 GKGRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 23 ~~~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
......|+|+|.+|||||||++.|...
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 445578999999999999999999654
No 319
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.52 E-value=0.072 Score=54.78 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=19.3
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.++|+|+.|||||||++.|.+.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999999643
No 320
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.51 E-value=0.07 Score=57.04 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=19.1
Q ss_pred EEEEecCCCChhHHHhHHHHh
Q psy15197 29 LVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 29 v~v~G~~~~GKstL~~~ll~~ 49 (902)
++|+|+.|||||||++.|.+-
T Consensus 37 ~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 37 TAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEECCTTSSHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999999999643
No 321
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.51 E-value=0.07 Score=56.54 Aligned_cols=22 Identities=32% Similarity=0.597 Sum_probs=19.4
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
-++|+|+.|||||||++.|.+-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999999643
No 322
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.50 E-value=0.071 Score=55.76 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=19.6
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.++|+|+.|||||||++.|.+.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999643
No 323
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.49 E-value=0.17 Score=54.69 Aligned_cols=26 Identities=31% Similarity=0.290 Sum_probs=22.3
Q ss_pred CcceEEEEEecCCCChhHHHhHHHHh
Q psy15197 24 KGRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 24 ~~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
....-|+|+|..|||||||++.|...
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 44567999999999999999999754
No 324
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.49 E-value=0.11 Score=56.61 Aligned_cols=27 Identities=33% Similarity=0.241 Sum_probs=23.2
Q ss_pred CCcceEEEEEecCCCChhHHHhHHHHh
Q psy15197 23 GKGRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 23 ~~~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.+...-|+|+|++|||||||++.|...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 455678999999999999999999654
No 325
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=91.48 E-value=0.085 Score=55.88 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=22.0
Q ss_pred CcceEEEEEecCCCChhHHHhHHHHh
Q psy15197 24 KGRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 24 ~~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
+..-.|+|+|+.|||||||++.|+..
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHh
Confidence 34457999999999999999999754
No 326
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.45 E-value=0.072 Score=55.61 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=19.5
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.++|+|+.|||||||++.|.+.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999643
No 327
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.45 E-value=0.072 Score=55.92 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.5
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.++|+|+.|||||||++.|.+.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999643
No 328
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.42 E-value=0.08 Score=55.62 Aligned_cols=21 Identities=38% Similarity=0.268 Sum_probs=19.3
Q ss_pred EEEEEecCCCChhHHHhHHHH
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLY 48 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~ 48 (902)
.++|+|+.|||||||++.|.+
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 489999999999999999974
No 329
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=91.39 E-value=0.093 Score=53.28 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.4
Q ss_pred eEEEEEecCCCChhHHHhHHHHh
Q psy15197 27 LHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 27 ~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
=-++|+|++|||||||+..|+..
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999753
No 330
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.36 E-value=0.095 Score=52.06 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.5
Q ss_pred eEEEEEecCCCChhHHHhHHHHh
Q psy15197 27 LHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 27 ~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.-++|+|..|||||||+++|+..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 35899999999999999999854
No 331
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.35 E-value=0.085 Score=54.31 Aligned_cols=21 Identities=24% Similarity=0.632 Sum_probs=19.2
Q ss_pred EEEEEecCCCChhHHHhHHHH
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLY 48 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~ 48 (902)
-++|+|++|||||||+++|+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 589999999999999999973
No 332
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=91.31 E-value=0.1 Score=52.34 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.7
Q ss_pred eEEEEEecCCCChhHHHhHHHHh
Q psy15197 27 LHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 27 ~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
..|+|+|.+|||||||++.|...
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999755
No 333
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.30 E-value=0.076 Score=56.20 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=19.6
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.++|+|+.|||||||++.|.+.
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4899999999999999999643
No 334
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.18 E-value=0.097 Score=52.66 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.8
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.|+|+|+.|+|||||++.|...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 4899999999999999999755
No 335
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.17 E-value=0.1 Score=52.75 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=21.3
Q ss_pred eEEEEEecCCCChhHHHhHHHHhcc
Q psy15197 27 LHLVVIGHVDAGKSTLMGHLLYLMG 51 (902)
Q Consensus 27 ~~v~v~G~~~~GKstL~~~ll~~~~ 51 (902)
++|+|+|.+||||||+++.|....|
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3799999999999999999965533
No 336
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.17 E-value=0.072 Score=54.78 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=15.3
Q ss_pred eEEEEEecCCCChhHHHhHHH-Hh
Q psy15197 27 LHLVVIGHVDAGKSTLMGHLL-YL 49 (902)
Q Consensus 27 ~~v~v~G~~~~GKstL~~~ll-~~ 49 (902)
--|+|+|+.|||||||++.|. ..
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 358999999999999999997 54
No 337
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=91.16 E-value=0.12 Score=50.74 Aligned_cols=24 Identities=25% Similarity=0.284 Sum_probs=21.2
Q ss_pred ceEEEEEecCCCChhHHHhHHHHh
Q psy15197 26 RLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 26 ~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
...|+|+|.+||||||+++.|...
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999754
No 338
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.15 E-value=0.098 Score=52.40 Aligned_cols=21 Identities=24% Similarity=0.369 Sum_probs=19.5
Q ss_pred EEEEEecCCCChhHHHhHHHH
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLY 48 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~ 48 (902)
+|+|+|.+|||||||++.|..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999965
No 339
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.14 E-value=0.12 Score=53.67 Aligned_cols=27 Identities=30% Similarity=0.455 Sum_probs=22.7
Q ss_pred cceEEEEEecCCCChhHHHhHHHHhcc
Q psy15197 25 GRLHLVVIGHVDAGKSTLMGHLLYLMG 51 (902)
Q Consensus 25 ~~~~v~v~G~~~~GKstL~~~ll~~~~ 51 (902)
...-|+|+|+.|||||||++.|....|
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 446799999999999999999976544
No 340
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.08 E-value=0.11 Score=52.61 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=21.4
Q ss_pred eEEEEEecCCCChhHHHhHHHHhcc
Q psy15197 27 LHLVVIGHVDAGKSTLMGHLLYLMG 51 (902)
Q Consensus 27 ~~v~v~G~~~~GKstL~~~ll~~~~ 51 (902)
++|+|+|.+||||||++..|....|
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3799999999999999999975543
No 341
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.05 E-value=0.083 Score=55.80 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=19.5
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.++|+|+.|||||||++.|.+.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999643
No 342
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.04 E-value=0.091 Score=55.80 Aligned_cols=21 Identities=33% Similarity=0.357 Sum_probs=19.3
Q ss_pred EEEEEecCCCChhHHHhHHHH
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLY 48 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~ 48 (902)
.++|+|+.|||||||++.|.+
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 489999999999999999975
No 343
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.03 E-value=0.084 Score=56.04 Aligned_cols=22 Identities=45% Similarity=0.581 Sum_probs=19.4
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.++|+|+.|||||||++.|.+.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 4899999999999999999643
No 344
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.02 E-value=0.084 Score=55.53 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=19.5
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.++|+|+.|||||||++.|.+.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4899999999999999999643
No 345
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=90.95 E-value=0.11 Score=50.47 Aligned_cols=22 Identities=27% Similarity=0.367 Sum_probs=19.9
Q ss_pred eEEEEEecCCCChhHHHhHHHH
Q psy15197 27 LHLVVIGHVDAGKSTLMGHLLY 48 (902)
Q Consensus 27 ~~v~v~G~~~~GKstL~~~ll~ 48 (902)
..|+|+|.+||||||+++.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999975
No 346
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.90 E-value=0.087 Score=56.10 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=19.5
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.++|+|+.|||||||++.|...
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999643
No 347
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=90.89 E-value=0.12 Score=52.69 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=21.2
Q ss_pred eEEEEEecCCCChhHHHhHHHHhc
Q psy15197 27 LHLVVIGHVDAGKSTLMGHLLYLM 50 (902)
Q Consensus 27 ~~v~v~G~~~~GKstL~~~ll~~~ 50 (902)
..|+|+|.+|||||||++.|....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999997543
No 348
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.88 E-value=0.066 Score=53.06 Aligned_cols=22 Identities=32% Similarity=0.655 Sum_probs=19.9
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.|+|+|.+|||||||++.|+..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999754
No 349
>3e4w_A Putative uncharacterized protein; heme enzyme, catalase, peroxidase, oxidoreductase; HET: HEM; 1.80A {Mycobacterium avium subsp} PDB: 3e4y_A*
Probab=90.87 E-value=0.05 Score=59.28 Aligned_cols=70 Identities=20% Similarity=0.214 Sum_probs=55.0
Q ss_pred CcchhhhhccccccCCCCccchhcccCCCCccccccchhhhccCCCCCCCCCcccccccccccccCCCCcccccccCCCC
Q psy15197 118 LEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFEDRETIIKTIGPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGG 197 (902)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (902)
+.|.+.+++|.||+++.+++|++|++++++.|+|..+..+-. |.-..+| ++++.|-.++.+-+.|
T Consensus 12 ~~~~~lid~l~~~~~e~~~~R~vHAKG~~a~G~F~v~~d~~~-------------~t~a~~f--~g~~tpv~vRFSt~~g 76 (320)
T 3e4w_A 12 LTPDQAIDAIRGTGGAQPGCRALHAKGTLYRGTFTATRDAVM-------------LSAAPHL--DGSTVPALIRFSNGSG 76 (320)
T ss_dssp CCHHHHHHHHHHTTCCCTTSCSSSCSEEEEEEEEEECTTGGG-------------TCCCGGG--SSCEEEEEEEEEESSS
T ss_pred CCHHHHHHHHHHhcCCCCCCccCCCCeeeEEEEEEECCCchH-------------HHhcccc--CCceeEEEEEeccCCC
Confidence 457899999999999999999999999999999997665422 3334444 4778888888887777
Q ss_pred ccccc
Q psy15197 198 AFGYF 202 (902)
Q Consensus 198 ~~~~~ 202 (902)
..+..
T Consensus 77 ~~g~~ 81 (320)
T 3e4w_A 77 NPKQR 81 (320)
T ss_dssp CTTCC
T ss_pred CCCCC
Confidence 76633
No 350
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=90.84 E-value=0.12 Score=51.30 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.5
Q ss_pred EEEEEecCCCChhHHHhHHHHhc
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYLM 50 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~~ 50 (902)
.|+|+|.+||||||+++.|....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999997653
No 351
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.80 E-value=0.091 Score=55.78 Aligned_cols=21 Identities=38% Similarity=0.490 Sum_probs=19.0
Q ss_pred EEEEEecCCCChhHHHhHHHH
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLY 48 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~ 48 (902)
.++|+|+.|||||||++.|.+
T Consensus 35 ~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 489999999999999999964
No 352
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=90.80 E-value=0.041 Score=59.84 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=20.1
Q ss_pred eEEEEEecCCCChhHHHhHHHHh
Q psy15197 27 LHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 27 ~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
-.++|+|++|+|||||+|+|+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred CEEEEECCCCCCHHHHHHHhccc
Confidence 47999999999999999999743
No 353
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=90.79 E-value=0.086 Score=56.93 Aligned_cols=22 Identities=23% Similarity=0.193 Sum_probs=19.9
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.++++|++|||||||+|+|+..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTT
T ss_pred eEEEECCCCCcHHHHHHHhccc
Confidence 5899999999999999999754
No 354
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=90.73 E-value=0.12 Score=51.91 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChhHHHhHHHH
Q psy15197 27 LHLVVIGHVDAGKSTLMGHLLY 48 (902)
Q Consensus 27 ~~v~v~G~~~~GKstL~~~ll~ 48 (902)
+.|+|+|.+||||||+++.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999953
No 355
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=90.68 E-value=0.13 Score=51.62 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.2
Q ss_pred eEEEEEecCCCChhHHHhHHHHhc
Q psy15197 27 LHLVVIGHVDAGKSTLMGHLLYLM 50 (902)
Q Consensus 27 ~~v~v~G~~~~GKstL~~~ll~~~ 50 (902)
.+|+|+|.+|||||||...|....
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 479999999999999999997553
No 356
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=90.65 E-value=0.17 Score=49.79 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=21.2
Q ss_pred ceEEEEEecCCCChhHHHhHHHHh
Q psy15197 26 RLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 26 ~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
...|+|+|.+||||||+++.|...
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999754
No 357
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.63 E-value=0.095 Score=56.08 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=19.4
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.++|+|+.|||||||++.|.+.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4899999999999999999643
No 358
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=90.59 E-value=0.096 Score=55.20 Aligned_cols=22 Identities=45% Similarity=0.616 Sum_probs=19.5
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.++|+|+.|||||||++.|.+.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999643
No 359
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=90.55 E-value=0.15 Score=51.18 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=22.2
Q ss_pred CcceEEEEEecCCCChhHHHhHHHHh
Q psy15197 24 KGRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 24 ~~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
+....|+|+|.+|||||||++.|...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 44568999999999999999999753
No 360
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=90.50 E-value=0.14 Score=50.35 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=19.9
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.|+|+|.+||||||+++.|...
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999654
No 361
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=90.47 E-value=0.18 Score=58.69 Aligned_cols=23 Identities=22% Similarity=0.585 Sum_probs=20.5
Q ss_pred eEEEEEecCCCChhHHHhHHHHh
Q psy15197 27 LHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 27 ~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
-+|+|+|++|||||||+++|+..
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 45999999999999999999754
No 362
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=90.14 E-value=0.14 Score=50.38 Aligned_cols=23 Identities=22% Similarity=0.104 Sum_probs=20.6
Q ss_pred eEEEEEecCCCChhHHHhHHHHh
Q psy15197 27 LHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 27 ~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
..|+|+|.+||||||+++.|...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999654
No 363
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=90.10 E-value=0.18 Score=49.83 Aligned_cols=27 Identities=22% Similarity=0.240 Sum_probs=22.7
Q ss_pred CCcceEEEEEecCCCChhHHHhHHHHh
Q psy15197 23 GKGRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 23 ~~~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
......|+|+|.+||||||++..|...
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 345678999999999999999999644
No 364
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=90.03 E-value=0.16 Score=49.94 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.1
Q ss_pred ceEEEEEecCCCChhHHHhHHHHh
Q psy15197 26 RLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 26 ~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
..+|+++|.+||||||+...|...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999755
No 365
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=89.99 E-value=0.12 Score=55.58 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=19.5
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.++|+|+.|||||||++.|.+.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 3899999999999999999643
No 366
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=89.98 E-value=0.12 Score=57.39 Aligned_cols=24 Identities=38% Similarity=0.497 Sum_probs=21.1
Q ss_pred ceEEEEEecCCCChhHHHhHHHHh
Q psy15197 26 RLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 26 ~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.-.|+|+|+.|||||||+++|+..
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 347999999999999999999754
No 367
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=89.85 E-value=0.18 Score=49.60 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=21.5
Q ss_pred eEEEEEecCCCChhHHHhHHHHhcc
Q psy15197 27 LHLVVIGHVDAGKSTLMGHLLYLMG 51 (902)
Q Consensus 27 ~~v~v~G~~~~GKstL~~~ll~~~~ 51 (902)
..|+|+|.+||||||++..|....+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999975533
No 368
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=89.77 E-value=0.12 Score=56.80 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=20.6
Q ss_pred eEEEEEecCCCChhHHHhHHHHh
Q psy15197 27 LHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 27 ~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
-+++|+|++|||||||++.|+..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999754
No 369
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=89.76 E-value=0.16 Score=49.41 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.5
Q ss_pred eEEEEEecCCCChhHHHhHHHHh
Q psy15197 27 LHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 27 ~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
..|+|+|.+||||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999999999755
No 370
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=89.74 E-value=0.089 Score=57.14 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=19.5
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.++|+|+.|||||||++.|++-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 4899999999999999999643
No 371
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=89.64 E-value=0.17 Score=51.37 Aligned_cols=26 Identities=31% Similarity=0.382 Sum_probs=22.2
Q ss_pred cceEEEEEecCCCChhHHHhHHHHhc
Q psy15197 25 GRLHLVVIGHVDAGKSTLMGHLLYLM 50 (902)
Q Consensus 25 ~~~~v~v~G~~~~GKstL~~~ll~~~ 50 (902)
...+|+|+|.+||||||++..|....
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999996543
No 372
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=89.60 E-value=0.18 Score=52.75 Aligned_cols=27 Identities=30% Similarity=0.188 Sum_probs=22.7
Q ss_pred cceEEEEEecCCCChhHHHhHHHHhcc
Q psy15197 25 GRLHLVVIGHVDAGKSTLMGHLLYLMG 51 (902)
Q Consensus 25 ~~~~v~v~G~~~~GKstL~~~ll~~~~ 51 (902)
....|+|+|+.|||||||++.|....|
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 346899999999999999999975544
No 373
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=89.60 E-value=0.13 Score=54.52 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=19.5
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.++|+|+.|||||||++.|...
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999643
No 374
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=89.58 E-value=0.14 Score=56.89 Aligned_cols=21 Identities=48% Similarity=0.523 Sum_probs=19.2
Q ss_pred EEEEecCCCChhHHHhHHHHh
Q psy15197 29 LVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 29 v~v~G~~~~GKstL~~~ll~~ 49 (902)
++|+|+.|||||||+++|..-
T Consensus 57 ~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 57 YGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEcCCCchHHHHHHHHhcC
Confidence 899999999999999999743
No 375
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=89.57 E-value=0.23 Score=49.61 Aligned_cols=27 Identities=26% Similarity=0.222 Sum_probs=22.7
Q ss_pred cceEEEEEecCCCChhHHHhHHHHhcc
Q psy15197 25 GRLHLVVIGHVDAGKSTLMGHLLYLMG 51 (902)
Q Consensus 25 ~~~~v~v~G~~~~GKstL~~~ll~~~~ 51 (902)
....|+|+|.+||||||+++.|....|
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 346799999999999999999976543
No 376
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=89.55 E-value=0.34 Score=46.80 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=22.3
Q ss_pred CcceEEEEEecCCCChhHHHhHHHHh
Q psy15197 24 KGRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 24 ~~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
....+|.|+|.+|+|||||+.++...
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999999755
No 377
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=89.53 E-value=0.19 Score=49.76 Aligned_cols=25 Identities=12% Similarity=0.316 Sum_probs=21.6
Q ss_pred cceEEEEEecCCCChhHHHhHHHHh
Q psy15197 25 GRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 25 ~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
...+|+|+|.+||||||+++.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999644
No 378
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=89.52 E-value=0.16 Score=48.92 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=21.6
Q ss_pred cceEEEEEecCCCChhHHHhHHHHh
Q psy15197 25 GRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 25 ~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
..-.++|+|++|+|||||+++|...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999765
No 379
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=89.50 E-value=0.2 Score=49.45 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=21.2
Q ss_pred ceEEEEEecCCCChhHHHhHHHHh
Q psy15197 26 RLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 26 ~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
...|+|+|.+||||||+++.|...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999654
No 380
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=89.47 E-value=0.63 Score=48.66 Aligned_cols=68 Identities=13% Similarity=0.035 Sum_probs=45.2
Q ss_pred CCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCC
Q psy15197 249 KTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDT 323 (902)
Q Consensus 249 ~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl 323 (902)
..+.+.|||||+...........+..+|.+|+|+....... ......+..++..+++.+-+|+|+.|.
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~-------~~~~~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTA-------VIVEKAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCH-------HHHHHHHHHHHTTTCCEEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchH-------HHHHHHHHHHHhCCCCEEEEEECCCcc
Confidence 36789999999865432223333447999999998775422 244555666666677644489999873
No 381
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=89.46 E-value=0.2 Score=49.75 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=21.8
Q ss_pred cceEEEEEecCCCChhHHHhHHHHh
Q psy15197 25 GRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 25 ~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
....|+|+|.+||||||+++.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4578999999999999999999654
No 382
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=89.45 E-value=0.17 Score=56.12 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=20.5
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.|+|+|++|||||||+++|+..
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 8999999999999999999755
No 383
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=89.35 E-value=0.64 Score=48.35 Aligned_cols=66 Identities=29% Similarity=0.447 Sum_probs=47.9
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCC
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTV 324 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~ 324 (902)
.+.+.|||||+... ..+...+..+|.+|+|+....... ......+..+...+.+.+-+|+|++|..
T Consensus 110 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~-------~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 175 (263)
T 1hyq_A 110 STDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISSI-------TDGLKTKIVAERLGTKVLGVVVNRITTL 175 (263)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHHH-------HHHHHHHHHHHHHTCEEEEEEEEEECTT
T ss_pred hCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChhHH-------HHHHHHHHHHHhcCCCeeEEEEccCCcc
Confidence 56799999998654 456677889999999998764311 2344555666666766677899999964
No 384
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=89.33 E-value=0.22 Score=49.79 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=22.3
Q ss_pred CcceEEEEEecCCCChhHHHhHHHHh
Q psy15197 24 KGRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 24 ~~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.....|+|+|.+||||||+++.|...
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999999654
No 385
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=89.30 E-value=0.19 Score=50.84 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.5
Q ss_pred EEEEEecCCCChhHHHhHHHHhc
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYLM 50 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~~ 50 (902)
+|+|+|.+||||||+++.|....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999997543
No 386
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=89.26 E-value=0.38 Score=47.96 Aligned_cols=39 Identities=23% Similarity=0.287 Sum_probs=26.7
Q ss_pred HHHHHHHHHhcCCCcceEEEEEecCCCChhHHHhHHHHh
Q psy15197 11 KKIEEYTREQAGGKGRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
+.+..+...........+|.|.|.+|+|||||+.+|...
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 39 RFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp HHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 344444443322212278999999999999999999755
No 387
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=89.26 E-value=0.14 Score=56.63 Aligned_cols=46 Identities=17% Similarity=0.238 Sum_probs=30.1
Q ss_pred ccchhHHHHHHHHHHHhc--CCCc--ceEEEEEecCCCChhHHHhHHHHh
Q psy15197 4 KVNKDKLKKIEEYTREQA--GGKG--RLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~--~~~~--~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.+|...+++......... .... .-+++|+|+.|||||||++.|...
T Consensus 144 ~iSsT~IRe~~~~~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 144 NVSATKIRTTPFQYWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CCCHHHHHHCGGGGGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCHHHHHhChhhChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHH
Confidence 456666665431111111 1234 468999999999999999999755
No 388
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=89.18 E-value=0.21 Score=52.25 Aligned_cols=27 Identities=22% Similarity=0.229 Sum_probs=22.8
Q ss_pred CCcceEEEEEecCCCChhHHHhHHHHh
Q psy15197 23 GKGRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 23 ~~~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.+....|+++|.+|||||||...|...
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 334578999999999999999999755
No 389
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=89.15 E-value=0.19 Score=50.10 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=21.1
Q ss_pred ceEEEEEecCCCChhHHHhHHHHh
Q psy15197 26 RLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 26 ~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
...|+|+|.+||||||+++.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999999654
No 390
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=89.08 E-value=0.22 Score=49.67 Aligned_cols=23 Identities=22% Similarity=0.140 Sum_probs=20.8
Q ss_pred eEEEEEecCCCChhHHHhHHHHh
Q psy15197 27 LHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 27 ~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
..|+|+|.+||||||+++.|...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999999755
No 391
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=89.06 E-value=0.2 Score=49.16 Aligned_cols=22 Identities=23% Similarity=0.523 Sum_probs=19.4
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
-.+|+|+.|+|||||+++|..-
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999765
No 392
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=89.00 E-value=0.21 Score=48.95 Aligned_cols=25 Identities=24% Similarity=0.151 Sum_probs=21.3
Q ss_pred cceEEEEEecCCCChhHHHhHHHHh
Q psy15197 25 GRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 25 ~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
....|+|+|.+||||||+++.|...
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3567999999999999999999643
No 393
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=88.97 E-value=0.22 Score=49.91 Aligned_cols=25 Identities=28% Similarity=0.182 Sum_probs=21.6
Q ss_pred cceEEEEEecCCCChhHHHhHHHHh
Q psy15197 25 GRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 25 ~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
....|+|+|.+||||||+++.|...
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3467999999999999999999644
No 394
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=88.95 E-value=0.29 Score=48.01 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=20.7
Q ss_pred eEEEEEecCCCChhHHHhHHHHh
Q psy15197 27 LHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 27 ~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
..|+|+|.+||||||++..|...
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999754
No 395
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=88.91 E-value=0.18 Score=49.19 Aligned_cols=22 Identities=41% Similarity=0.508 Sum_probs=19.9
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
+|+|+|.+|||||||...|...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6999999999999999999654
No 396
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=88.90 E-value=0.19 Score=56.05 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=22.1
Q ss_pred CcceEEEEEecCCCChhHHHhHHHHh
Q psy15197 24 KGRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 24 ~~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
+..-.|+|+|++|||||||++.|+..
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34447999999999999999999854
No 397
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=88.83 E-value=0.25 Score=49.93 Aligned_cols=27 Identities=30% Similarity=0.271 Sum_probs=22.6
Q ss_pred CCcceEEEEEecCCCChhHHHhHHHHh
Q psy15197 23 GKGRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 23 ~~~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
......|+|+|.+||||||++..|...
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 445568999999999999999998644
No 398
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=88.81 E-value=0.18 Score=55.89 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=19.5
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
-++|+|+.|||||||++.|.+.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 3899999999999999999743
No 399
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=88.77 E-value=0.23 Score=50.84 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=21.4
Q ss_pred eEEEEEecCCCChhHHHhHHHHhc
Q psy15197 27 LHLVVIGHVDAGKSTLMGHLLYLM 50 (902)
Q Consensus 27 ~~v~v~G~~~~GKstL~~~ll~~~ 50 (902)
..|+|+|.+||||||+++.|....
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 679999999999999999997553
No 400
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=88.75 E-value=0.11 Score=52.20 Aligned_cols=22 Identities=32% Similarity=0.302 Sum_probs=19.7
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
-|+|+|.+|||||||++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999999754
No 401
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=88.74 E-value=0.22 Score=49.99 Aligned_cols=25 Identities=32% Similarity=0.229 Sum_probs=21.7
Q ss_pred cceEEEEEecCCCChhHHHhHHHHh
Q psy15197 25 GRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 25 ~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
....|+|+|.+||||||+++.|...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999999654
No 402
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=88.71 E-value=0.21 Score=49.37 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=20.4
Q ss_pred eEEEEEecCCCChhHHHhHHHHh
Q psy15197 27 LHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 27 ~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.-|+|+|..|||||||+.+|+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999999854
No 403
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=88.63 E-value=0.24 Score=49.03 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=21.2
Q ss_pred eEEEEEecCCCChhHHHhHHHHhc
Q psy15197 27 LHLVVIGHVDAGKSTLMGHLLYLM 50 (902)
Q Consensus 27 ~~v~v~G~~~~GKstL~~~ll~~~ 50 (902)
..|+|+|.+||||||++..|....
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999997553
No 404
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=88.45 E-value=0.2 Score=54.19 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=20.9
Q ss_pred ceEEEEEecCCCChhHHHhHHHHh
Q psy15197 26 RLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 26 ~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.-.|+|+|+.|||||||++.|...
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 347999999999999999999754
No 405
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=88.32 E-value=0.25 Score=47.64 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=19.9
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
+|+|.|.+||||||+++.|-..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999654
No 406
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=88.32 E-value=0.24 Score=50.50 Aligned_cols=24 Identities=38% Similarity=0.380 Sum_probs=21.2
Q ss_pred EEEEEecCCCChhHHHhHHHHhcc
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYLMG 51 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~~~ 51 (902)
+|+|+|+|||||+|++..|..+-|
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 689999999999999999976644
No 407
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=88.28 E-value=0.22 Score=48.96 Aligned_cols=22 Identities=23% Similarity=0.205 Sum_probs=19.7
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.|+|.|.+||||||+++.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999653
No 408
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=88.27 E-value=3.3 Score=47.14 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=21.1
Q ss_pred cceEEEEEecCCCChhHHHhHHHHh
Q psy15197 25 GRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 25 ~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.-.-|+|+|..++|||+|+|.|+..
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll~~ 90 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFMLRY 90 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCchhHHHHHHHHH
Confidence 3456889999999999999988754
No 409
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=88.26 E-value=0.23 Score=50.25 Aligned_cols=23 Identities=17% Similarity=0.368 Sum_probs=20.3
Q ss_pred eEEEEEecCCCChhHHHhHHHHh
Q psy15197 27 LHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 27 ~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
-.++|+|++|+|||||+.+|+..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 35889999999999999999754
No 410
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=88.25 E-value=0.2 Score=55.51 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=19.4
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
-++|+|+.|||||||++.|.+.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 3899999999999999999643
No 411
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=88.20 E-value=0.29 Score=50.12 Aligned_cols=66 Identities=18% Similarity=0.232 Sum_probs=47.9
Q ss_pred CCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCC
Q psy15197 249 KTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDT 323 (902)
Q Consensus 249 ~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl 323 (902)
..+.+.|||||+.... .+...+..+|.+|+|+.++.... .........+...+++.+.+++||.+.
T Consensus 130 ~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~-------~~~~~~~~~~~~~~~~~~~~v~N~~~~ 195 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLNSI-------KTGLNIEKLAGDLGIKKVRYVINKVRN 195 (254)
T ss_dssp TCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHHHH-------HHHHHHHHHHHHHTCSCEEEEEEEECC
T ss_pred CCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHHHH-------HHHHHHHHHHHHcCCccEEEEEeCCCC
Confidence 3577999999986543 45667789999999998864321 234445566777787777799999983
No 412
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=88.16 E-value=0.2 Score=55.54 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=19.4
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
-++|+|+.|||||||++.|.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 3899999999999999999643
No 413
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=88.08 E-value=0.21 Score=54.28 Aligned_cols=22 Identities=36% Similarity=0.587 Sum_probs=19.8
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
-++|+|..|||||||+++|+..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 4789999999999999999854
No 414
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=88.03 E-value=0.22 Score=48.74 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=21.0
Q ss_pred ceEEEEEecCCCChhHHHhHHHHh
Q psy15197 26 RLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 26 ~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
..+|+|+|.+||||||++..|...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 357999999999999999999654
No 415
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=87.98 E-value=0.21 Score=55.82 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=19.5
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
-++|+|+.|||||||++.|.+-
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHcC
Confidence 3899999999999999999643
No 416
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=87.96 E-value=0.5 Score=52.21 Aligned_cols=40 Identities=18% Similarity=0.322 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhcCCCcceEEEEEecCCCChhHHHhHHHHh
Q psy15197 10 LKKIEEYTREQAGGKGRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
++++...++.........+|+|+|.+|+|||||...|...
T Consensus 8 ~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 8 ADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 3444555555444455679999999999999999988654
No 417
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=87.94 E-value=0.21 Score=55.44 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=19.4
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
-++|+|+.|||||||++.|.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 3899999999999999999643
No 418
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=87.90 E-value=0.23 Score=56.29 Aligned_cols=23 Identities=30% Similarity=0.202 Sum_probs=20.7
Q ss_pred eEEEEEecCCCChhHHHhHHHHh
Q psy15197 27 LHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 27 ~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
=.|+|+|++|||||||+++|+..
T Consensus 168 gii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHhh
Confidence 36999999999999999999865
No 419
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=87.90 E-value=0.28 Score=49.71 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.5
Q ss_pred ceEEEEEecCCCChhHHHhHHHH
Q psy15197 26 RLHLVVIGHVDAGKSTLMGHLLY 48 (902)
Q Consensus 26 ~~~v~v~G~~~~GKstL~~~ll~ 48 (902)
.+.|+|+|..||||||+++.|-.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999853
No 420
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=87.90 E-value=0.21 Score=55.62 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=19.4
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
-++|+|+.|||||||++.|.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCcHHHHHHHHHHcC
Confidence 3899999999999999999643
No 421
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=87.85 E-value=0.47 Score=48.43 Aligned_cols=66 Identities=20% Similarity=0.330 Sum_probs=47.8
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCC
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTV 324 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~ 324 (902)
.+.+.|||||+... ..+...+..+|.+|+|+....... ......+..+...+.+.+-+|+||++..
T Consensus 111 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~-------~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 176 (237)
T 1g3q_A 111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISCL-------TDTMKVGIVLKKAGLAILGFVLNRYGRS 176 (237)
T ss_dssp GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHHH-------HHHHHHHHHHHHTTCEEEEEEEEEETSC
T ss_pred cCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCcccH-------HHHHHHHHHHHhCCCceEEEEEecCCcc
Confidence 46789999998654 456677889999999998764311 2344555666666777677899999864
No 422
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=87.82 E-value=0.23 Score=49.09 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=19.6
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
-|+|.|.+||||||+++.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999654
No 423
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=87.81 E-value=0.24 Score=53.57 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.5
Q ss_pred eEEEEEecCCCChhHHHhHHHHh
Q psy15197 27 LHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 27 ~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
--++++|+.|||||||++.|.+.
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999999999754
No 424
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=87.80 E-value=0.24 Score=50.92 Aligned_cols=26 Identities=19% Similarity=0.464 Sum_probs=22.0
Q ss_pred CcceEEEEEecCCCChhHHHhHHHHh
Q psy15197 24 KGRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 24 ~~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
+...-|+|+|..|||||||++.|...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34567999999999999999998643
No 425
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=87.68 E-value=0.31 Score=50.78 Aligned_cols=28 Identities=25% Similarity=0.432 Sum_probs=22.7
Q ss_pred CcceEEEEEecCCCChhHHHhHHHHhcc
Q psy15197 24 KGRLHLVVIGHVDAGKSTLMGHLLYLMG 51 (902)
Q Consensus 24 ~~~~~v~v~G~~~~GKstL~~~ll~~~~ 51 (902)
...+.|+|.|.+||||||+++.|....|
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3457899999999999999999965433
No 426
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=87.62 E-value=0.26 Score=50.10 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=21.6
Q ss_pred eEEEEEecCCCChhHHHhHHHHhcc
Q psy15197 27 LHLVVIGHVDAGKSTLMGHLLYLMG 51 (902)
Q Consensus 27 ~~v~v~G~~~~GKstL~~~ll~~~~ 51 (902)
..|+|+|.+||||||+++.|....+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999975543
No 427
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=87.61 E-value=0.23 Score=55.39 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=19.4
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
-++|+|+.|||||||++.|.+-
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 3899999999999999999643
No 428
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=87.56 E-value=0.42 Score=52.44 Aligned_cols=42 Identities=17% Similarity=0.304 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHhcCCCcce--EEEEEecCCCChhHHHhHHHHh
Q psy15197 8 DKLKKIEEYTREQAGGKGRL--HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~--~v~v~G~~~~GKstL~~~ll~~ 49 (902)
..++++.............. ++.|.|++|+|||||+.++...
T Consensus 24 ~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 24 QQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp HHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 45566666666543333334 8999999999999999999755
No 429
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=87.47 E-value=0.3 Score=47.21 Aligned_cols=23 Identities=43% Similarity=0.602 Sum_probs=20.3
Q ss_pred eEEEEEecCCCChhHHHhHHHHh
Q psy15197 27 LHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 27 ~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
-+|+|+|.+||||||+...|-..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999998654
No 430
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=87.36 E-value=0.26 Score=56.51 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=21.3
Q ss_pred cceEEEEEecCCCChhHHHhHHHHh
Q psy15197 25 GRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 25 ~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
..-.|+|+|+.|||||||++.|+..
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCc
Confidence 3446999999999999999999754
No 431
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=87.36 E-value=0.43 Score=46.08 Aligned_cols=26 Identities=15% Similarity=0.353 Sum_probs=22.3
Q ss_pred CcceEEEEEecCCCChhHHHhHHHHh
Q psy15197 24 KGRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 24 ~~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
....+|.|.|.+|+|||||+.+|...
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 44568899999999999999999755
No 432
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=87.33 E-value=0.3 Score=50.00 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=19.9
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.|+|+|.+||||||+++.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999654
No 433
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=87.30 E-value=0.9 Score=45.91 Aligned_cols=65 Identities=8% Similarity=0.072 Sum_probs=45.3
Q ss_pred CeEEEEEeCCCc-cchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh-CCCeEEEEEecCCCC
Q psy15197 250 TKYITLLDAPGH-KDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL-GVNQLGVVINKLDTV 324 (902)
Q Consensus 250 ~~~i~lIDTPG~-~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~-~i~~iIVviNKiDl~ 324 (902)
.+.+.|||||+. ... .+...+..+|.+|+++..+.... ......+..+... +.+ +.+|+|++|..
T Consensus 67 ~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~~~~-------~~~~~~~~~l~~~~~~~-~~vv~N~~~~~ 133 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDALAL-------DALMLTIETLQKLGNNR-FRILLTIIPPY 133 (209)
T ss_dssp GCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSHHHH-------HHHHHHHHHHHHTCSSS-EEEEECSBCCT
T ss_pred cCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCchhH-------HHHHHHHHHHHhccCCC-EEEEEEecCCc
Confidence 567999999987 443 34567789999999998765321 2344555566663 445 66899999964
No 434
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=87.05 E-value=0.29 Score=52.18 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=19.8
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
-++|+|++|+|||||+..|...
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4889999999999999999755
No 435
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=87.01 E-value=0.27 Score=55.15 Aligned_cols=21 Identities=33% Similarity=0.591 Sum_probs=19.1
Q ss_pred EEEEEecCCCChhHHHhHHHH
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLY 48 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~ 48 (902)
-++|+|+.|||||||++.|..
T Consensus 49 ~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHhC
Confidence 389999999999999999964
No 436
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=86.91 E-value=0.31 Score=47.07 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=19.8
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.|+|+|.+||||||++..|-..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999654
No 437
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=86.84 E-value=0.47 Score=48.02 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=22.0
Q ss_pred cceEEEEEecCCCChhHHHhHHHHh
Q psy15197 25 GRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 25 ~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
...+|.|.|++|+|||||+.+|...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999755
No 438
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=86.77 E-value=0.32 Score=47.68 Aligned_cols=22 Identities=32% Similarity=0.376 Sum_probs=19.7
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.|+|+|.+||||||+...|...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999654
No 439
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=86.69 E-value=0.35 Score=49.13 Aligned_cols=23 Identities=26% Similarity=0.327 Sum_probs=20.8
Q ss_pred eEEEEEecCCCChhHHHhHHHHh
Q psy15197 27 LHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 27 ~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.+|+|+|.+||||||+++.|...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999654
No 440
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=86.66 E-value=0.19 Score=55.51 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=19.5
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
-++|+|+.|||||||++.|.+-
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEEECCCCccHHHHHHHHHcC
Confidence 4899999999999999999643
No 441
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=86.59 E-value=0.29 Score=47.73 Aligned_cols=23 Identities=17% Similarity=0.094 Sum_probs=16.4
Q ss_pred eEEEEEecCCCChhHHHhHHHHh
Q psy15197 27 LHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 27 ~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
..|+|+|.+||||||+++.|...
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999644
No 442
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=86.45 E-value=0.33 Score=50.90 Aligned_cols=22 Identities=14% Similarity=0.169 Sum_probs=19.8
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.|+|+|.+|||||||...|...
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 4899999999999999999755
No 443
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=86.35 E-value=0.35 Score=46.44 Aligned_cols=23 Identities=30% Similarity=0.574 Sum_probs=19.4
Q ss_pred ceEEEEEecCCCChhHHHhHHHHh
Q psy15197 26 RLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 26 ~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.++ +|+|+.|+|||||+++|...
T Consensus 24 g~~-~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 24 GIN-LIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp EEE-EEECCTTSSHHHHHHHHHHH
T ss_pred CeE-EEECCCCCCHHHHHHHHHHH
Confidence 344 69999999999999999754
No 444
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=86.30 E-value=0.34 Score=48.68 Aligned_cols=22 Identities=27% Similarity=0.202 Sum_probs=19.9
Q ss_pred eEEEEEecCCCChhHHHhHHHH
Q psy15197 27 LHLVVIGHVDAGKSTLMGHLLY 48 (902)
Q Consensus 27 ~~v~v~G~~~~GKstL~~~ll~ 48 (902)
--++|+|++|+|||||+..|+.
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999985
No 445
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=86.19 E-value=0.35 Score=51.37 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=20.1
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.|+++|++|+|||||+++|...
T Consensus 46 GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3999999999999999999765
No 446
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=86.15 E-value=0.32 Score=51.13 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=21.5
Q ss_pred ceEEEEEecCCCChhHHHhHHHHhc
Q psy15197 26 RLHLVVIGHVDAGKSTLMGHLLYLM 50 (902)
Q Consensus 26 ~~~v~v~G~~~~GKstL~~~ll~~~ 50 (902)
.-+|+|+|.+|||||||++.|....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3479999999999999999997543
No 447
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=86.15 E-value=0.39 Score=52.41 Aligned_cols=41 Identities=15% Similarity=0.243 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhcCCCcceEEEEEecCCCChhHHHhHHHHh
Q psy15197 9 KLKKIEEYTREQAGGKGRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.++.+.+...........-.|.|.|++|+|||||+.++...
T Consensus 28 e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 28 QIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp HHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 44455554444332344558999999999999999999754
No 448
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=86.01 E-value=0.41 Score=49.21 Aligned_cols=25 Identities=28% Similarity=0.310 Sum_probs=21.7
Q ss_pred ceEEEEEecCCCChhHHHhHHHHhc
Q psy15197 26 RLHLVVIGHVDAGKSTLMGHLLYLM 50 (902)
Q Consensus 26 ~~~v~v~G~~~~GKstL~~~ll~~~ 50 (902)
..+|+|+|.+||||||++..|....
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999996553
No 449
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=85.88 E-value=0.39 Score=49.94 Aligned_cols=27 Identities=33% Similarity=0.457 Sum_probs=22.3
Q ss_pred cceEEEEEecCCCChhHHHhHHHHhcc
Q psy15197 25 GRLHLVVIGHVDAGKSTLMGHLLYLMG 51 (902)
Q Consensus 25 ~~~~v~v~G~~~~GKstL~~~ll~~~~ 51 (902)
..+.|+|.|++|||||||++.|....|
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 347899999999999999999975533
No 450
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=85.88 E-value=0.78 Score=50.26 Aligned_cols=42 Identities=14% Similarity=0.150 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHhcCCCcceEEEEEecCCCChhHHHhHHHHh
Q psy15197 8 DKLKKIEEYTREQAGGKGRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
..++++..............+|.|.|++|+|||||+.++...
T Consensus 27 ~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 27 DILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp HHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 456666666666544455568999999999999999999754
No 451
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=85.86 E-value=0.45 Score=50.66 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=20.8
Q ss_pred cceEEEEEecCCCChhHHHhHHH
Q psy15197 25 GRLHLVVIGHVDAGKSTLMGHLL 47 (902)
Q Consensus 25 ~~~~v~v~G~~~~GKstL~~~ll 47 (902)
..+.|+|+|.+||||||+++.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999996
No 452
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=85.79 E-value=0.62 Score=48.36 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=21.1
Q ss_pred ceEEEEEecCCCChhHHHhHHHHh
Q psy15197 26 RLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 26 ~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
...|.++|++|+|||||+.+|...
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 347999999999999999999755
No 453
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=85.69 E-value=0.39 Score=49.85 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=20.1
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.|.|+|++|+|||||+++|...
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999765
No 454
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=85.68 E-value=0.36 Score=53.50 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.4
Q ss_pred eEEEEEecCCCChhHHHhHHHHh
Q psy15197 27 LHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 27 ~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
--|+|+|+.|||||||++.|.+.
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHhh
Confidence 46999999999999999999754
No 455
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=85.62 E-value=0.35 Score=55.69 Aligned_cols=23 Identities=35% Similarity=0.342 Sum_probs=20.1
Q ss_pred eEEEEEecCCCChhHHHhHHHHh
Q psy15197 27 LHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 27 ~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
--++|+|+.|||||||+++|...
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 35899999999999999999754
No 456
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=85.59 E-value=0.19 Score=55.62 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=19.4
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
-++|+|+.|||||||++.|.+-
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4899999999999999999643
No 457
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=85.35 E-value=0.4 Score=48.98 Aligned_cols=23 Identities=17% Similarity=0.210 Sum_probs=20.5
Q ss_pred eEEEEEecCCCChhHHHhHHHHh
Q psy15197 27 LHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 27 ~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
--++|+|++|+|||||+..|+..
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999999864
No 458
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=85.32 E-value=0.56 Score=48.40 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=22.4
Q ss_pred CcceEEEEEecCCCChhHHHhHHHHh
Q psy15197 24 KGRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 24 ~~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
+...-|+|.|.+||||||+++.|...
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 34567999999999999999999755
No 459
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=85.26 E-value=0.36 Score=50.66 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.4
Q ss_pred eEEEEEecCCCChhHHHhHHHHh
Q psy15197 27 LHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 27 ~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
..|+|+|.+||||||++..|...
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999999643
No 460
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=84.90 E-value=0.37 Score=56.86 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=19.7
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.++|+|+.|||||||++.|++.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 4999999999999999999643
No 461
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=84.82 E-value=0.46 Score=52.37 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.9
Q ss_pred eEEEEEecCCCChhHHHhHHHHh
Q psy15197 27 LHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 27 ~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
=.++|+|+.|+|||||++.|...
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999866
No 462
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=84.81 E-value=1 Score=44.93 Aligned_cols=38 Identities=13% Similarity=0.050 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhcCCCcceEEEEEecCCCChhHHHhHHHHh
Q psy15197 9 KLKKIEEYTREQAGGKGRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.++.+....... +..-.+.|.|++|+|||||+.++...
T Consensus 31 ~~~~l~~~l~~~---~~~~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 31 VLTALANGLSLG---RIHHAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp HHHHHHHHHHHT---CCCSEEEEECSTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344444444432 22237899999999999999999754
No 463
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=84.71 E-value=0.35 Score=56.59 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=21.0
Q ss_pred cceEEEEEecCCCChhHHHhHHHHh
Q psy15197 25 GRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 25 ~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
..=-++|+|+.|||||||++.|.+.
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3345899999999999999999753
No 464
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=84.40 E-value=0.41 Score=56.53 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=19.7
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.++|+|+.|||||||++.|++.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999744
No 465
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=84.36 E-value=0.44 Score=52.83 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=19.4
Q ss_pred ceEEEEEecCCCChhHHHhHHHHh
Q psy15197 26 RLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 26 ~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.++ +|+|+.|||||||+++|.+.
T Consensus 24 g~~-~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 24 GIT-VVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp EEE-EEECCTTSSHHHHHHHHHHH
T ss_pred CeE-EEECCCCCCHHHHHHHHHHH
Confidence 454 49999999999999999654
No 466
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=84.35 E-value=0.51 Score=47.46 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=21.5
Q ss_pred cceEEEEEecCCCChhHHHhHHHHh
Q psy15197 25 GRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 25 ~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
-...|+|+|..||||||+.+.|-..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 3567999999999999999999644
No 467
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=84.28 E-value=0.43 Score=55.79 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=20.2
Q ss_pred eEEEEEecCCCChhHHHhHHHHh
Q psy15197 27 LHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 27 ~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
=.++|+|+.|||||||++.|.+.
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999743
No 468
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=84.16 E-value=0.42 Score=52.13 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=21.2
Q ss_pred eEEEEEecCCCChhHHHhHHHHhc
Q psy15197 27 LHLVVIGHVDAGKSTLMGHLLYLM 50 (902)
Q Consensus 27 ~~v~v~G~~~~GKstL~~~ll~~~ 50 (902)
-+++++|++|+|||||++.|....
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 368999999999999999997664
No 469
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=84.05 E-value=0.57 Score=48.19 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=23.1
Q ss_pred CcceEEEEEecCCCChhHHHhHHHHhcc
Q psy15197 24 KGRLHLVVIGHVDAGKSTLMGHLLYLMG 51 (902)
Q Consensus 24 ~~~~~v~v~G~~~~GKstL~~~ll~~~~ 51 (902)
.....|+|+|.+||||||+++.|....|
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3456899999999999999999975443
No 470
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=84.04 E-value=0.81 Score=43.30 Aligned_cols=39 Identities=10% Similarity=0.110 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhcCCCcceEEEEEecCCCChhHHHhHHHHh
Q psy15197 9 KLKKIEEYTREQAGGKGRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.++++.+...... +...+|.|.|.+|+|||+|..+|-..
T Consensus 9 ~~~~~~~~~~~~a--~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 9 WINQYRRRLQQLS--ETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp HHHHHHHHHHHHT--TCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHh--CCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 3444554444433 45568999999999999999998643
No 471
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=84.01 E-value=1.2 Score=47.47 Aligned_cols=67 Identities=13% Similarity=0.153 Sum_probs=48.2
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCC
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTV 324 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~ 324 (902)
.+.++|||||....... +......+|.+|+|+.+..... ......+..+...+.+.+-+|+||+|..
T Consensus 201 ~yD~VIIDtpp~~~~~d-a~~l~~~aD~vllVv~~~~~~~-------~~~~~~~~~l~~~g~~~~GvVlN~v~~~ 267 (286)
T 3la6_A 201 NYDLVLIDTPPILAVTD-AAIVGRHVGTTLMVARYAVNTL-------KEVETSLSRFEQNGIPVKGVILNSIFRR 267 (286)
T ss_dssp HCSEEEEECCCTTTCTH-HHHHTTTCSEEEEEEETTTSBH-------HHHHHHHHHHHHTTCCCCEEEEEEECCC
T ss_pred CCCEEEEcCCCCcchHH-HHHHHHHCCeEEEEEeCCCCcH-------HHHHHHHHHHHhCCCCEEEEEEcCcccc
Confidence 35689999998754322 3334467999999999876522 3555666777788877677899999964
No 472
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=83.95 E-value=0.51 Score=49.80 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=20.1
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.|+|+|++|+|||||+++|...
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 4999999999999999999765
No 473
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=83.84 E-value=0.38 Score=56.94 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=19.7
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.++|+|+.|||||||++.|++.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999644
No 474
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=83.71 E-value=0.4 Score=56.80 Aligned_cols=22 Identities=23% Similarity=0.573 Sum_probs=19.7
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.++|+|+.|||||||++.|++.
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4999999999999999999743
No 475
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=83.57 E-value=1.6 Score=46.04 Aligned_cols=67 Identities=16% Similarity=0.270 Sum_probs=45.5
Q ss_pred CeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHhCCCeEEEEEecCCCC
Q psy15197 250 TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTV 324 (902)
Q Consensus 250 ~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~~i~~iIVviNKiDl~ 324 (902)
.+.+.|||||+..... .+...+..+|.+|+|+.+..... ......+..+...+.+.+=+|+|++|..
T Consensus 191 ~yD~VIIDtpp~~~~~-d~~~l~~~aD~vilVv~~~~~~~-------~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 191 NYNFVIIDTPPVNTVT-DAQLFSKFTGNVVYVVNSENNNK-------DEVKKGKELIEATGAKLLGVVLNRMPKD 257 (271)
T ss_dssp HCSEEEEECCCTTTCS-HHHHHHHHHCEEEEEEETTSCCH-------HHHHHHHHHHHTTTCEEEEEEEEEECC-
T ss_pred CCCEEEEeCCCCchHH-HHHHHHHHCCEEEEEEeCCCCcH-------HHHHHHHHHHHhCCCCEEEEEEeCCcCC
Confidence 4578999999865432 22334467999999999876522 3455556666666766544889999964
No 476
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=83.53 E-value=0.83 Score=46.62 Aligned_cols=37 Identities=19% Similarity=0.292 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhcCCCcceEEEEEecCCCChhHHHhHHHHh
Q psy15197 10 LKKIEEYTREQAGGKGRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
+..++.+... .+..-++.+.|+||+||||++.+|...
T Consensus 45 ~~~l~~~~~~---iPkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 45 LGALKSFLKG---TPKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHT---CTTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhc---CCcccEEEEECCCCCCHHHHHHHHHHH
Confidence 4455555543 122346999999999999999999754
No 477
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=83.50 E-value=0.35 Score=57.09 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=19.6
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.++|+|+.|||||||++.|++.
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 4899999999999999999744
No 478
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=83.47 E-value=0.55 Score=49.64 Aligned_cols=22 Identities=27% Similarity=0.117 Sum_probs=19.9
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
-++|+|++|+|||||+.+|+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999999854
No 479
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=83.45 E-value=0.74 Score=45.52 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhcCCCcceEEEEEecCCCChhHHHhHHHHh
Q psy15197 9 KLKKIEEYTREQAGGKGRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.++++.+..... ..-+|.|.|.+|+|||||+.+|...
T Consensus 25 ~~~~l~~~l~~~----~~~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 25 VIQRLKGYVERK----NIPHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp HHHHHHHHHHTT----CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC----CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 344455444432 2224999999999999999999754
No 480
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=83.39 E-value=0.74 Score=43.49 Aligned_cols=37 Identities=11% Similarity=0.135 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhcCCCcceEEEEEecCCCChhHHHhHHH
Q psy15197 9 KLKKIEEYTREQAGGKGRLHLVVIGHVDAGKSTLMGHLL 47 (902)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~v~v~G~~~~GKstL~~~ll 47 (902)
.++++.+...... +...+|.|.|.+|+|||+|..+|.
T Consensus 12 ~~~~l~~~~~~~~--~~~~~vll~G~~GtGKt~lA~~i~ 48 (143)
T 3co5_A 12 AIQEMNREVEAAA--KRTSPVFLTGEAGSPFETVARYFH 48 (143)
T ss_dssp HHHHHHHHHHHHH--TCSSCEEEEEETTCCHHHHHGGGC
T ss_pred HHHHHHHHHHHHh--CCCCcEEEECCCCccHHHHHHHHH
Confidence 4455555555443 344679999999999999998885
No 481
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=83.30 E-value=0.6 Score=50.95 Aligned_cols=42 Identities=17% Similarity=0.277 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHhcCCCcceEEEEEecCCCChhHHHhHHHHh
Q psy15197 8 DKLKKIEEYTREQAGGKGRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
..++++....+.........+|.|.|++|+|||||+.++...
T Consensus 26 ~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 26 AELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp HHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 345555555544433445568999999999999999999755
No 482
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=83.28 E-value=0.8 Score=47.03 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=20.7
Q ss_pred eEEEEEecCCCChhHHHhHHHHhcc
Q psy15197 27 LHLVVIGHVDAGKSTLMGHLLYLMG 51 (902)
Q Consensus 27 ~~v~v~G~~~~GKstL~~~ll~~~~ 51 (902)
.-|.|+|+|||||+|++..|...-|
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHC
Confidence 3477899999999999999976543
No 483
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=83.19 E-value=0.058 Score=63.38 Aligned_cols=130 Identities=20% Similarity=0.125 Sum_probs=90.4
Q ss_pred cceEEEEEecCCCChhHHHhHHHHhccccchhhhccchhhhhhcccccceeeeeccccCcccccCCccccCCCCCCCCcc
Q psy15197 25 GRLHLVVIGHVDAGKSTLMGHLLYLMGRVSAREIHKHETESKKLGKQSFMYAWILDETGEESSCEIPVDTTSAGNPVDSE 104 (902)
Q Consensus 25 ~~~~v~v~G~~~~GKstL~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 104 (902)
..+||+||||+|||||||+++||+.+|+|.+....+ .| .-.-+.++|.+++|++|+||+.++..-
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~-------~~--~~~~~~~~D~~~~EreRGITI~s~~~~------ 94 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVK-------AR--KAARHATSDWMAMERERGISVTTSVMQ------ 94 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHH-------HC----------------------CTTTEEE------
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceee-------cC--ccccccccCChHHHHHCCCcEeeceEE------
Confidence 358999999999999999999999999886532211 11 112245789999999999999987431
Q ss_pred ccccccCCCCCCCCcchhhhhccccccCCCCccchhcccCCCCc------cccccchhhhccCCCCCCCCCccccccccc
Q psy15197 105 TIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAF------GYFEDRETIIKTIGPHGPVPLEDTYYLDKL 178 (902)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (902)
.-|. -.-++.|||++|.++....+|++++-+|+.+ |.-.+++++.++...++.++..+++++|+.
T Consensus 95 -~~~~--------~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~ 165 (548)
T 3vqt_A 95 -FPYR--------DRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDRE 165 (548)
T ss_dssp -EEET--------TEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSC
T ss_pred -EEEC--------CEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccch
Confidence 1111 1357899999999999999999999999943 889999999999999999999999999984
No 484
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=83.17 E-value=0.11 Score=62.28 Aligned_cols=125 Identities=20% Similarity=0.163 Sum_probs=104.1
Q ss_pred ceEEEEEecCCCChhHHHhHHHHhccccchhhhccchhhhhhcccccceeeeeccccCcccccCCccccCCCCCCCCccc
Q psy15197 26 RLHLVVIGHVDAGKSTLMGHLLYLMGRVSAREIHKHETESKKLGKQSFMYAWILDETGEESSCEIPVDTTSAGNPVDSET 105 (902)
Q Consensus 26 ~~~v~v~G~~~~GKstL~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 105 (902)
.+||+||||+|||||||+++||+.+|.|++..... .-+..+|.+++|++|+||+.++..-...+
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~-------------~g~~~~D~~~~EreRGITI~s~~~~~~~~--- 65 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVD-------------KGTTRTDNTLLERQRGITIQTGITSFQWE--- 65 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCC-------------CSCCSTTCSTTHHHHSSCSSCCCCCCBCS---
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccc-------------cCCcccCCcHHHHhCCCcEEeeeEEEEEC---
Confidence 36999999999999999999999999987642111 11357999999999999999875422111
Q ss_pred cccccCCCCCCCCcchhhhhccccccCCCCccchhcccCCCCc------cccccchhhhccCCCCCCCCCccccccccc
Q psy15197 106 IIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAF------GYFEDRETIIKTIGPHGPVPLEDTYYLDKL 178 (902)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (902)
-+-++.+||++|.++-...+|++++.+|+.+ |.-.+++++.++...++.++..+++++|+.
T Consensus 66 ------------~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~ 132 (638)
T 3j25_A 66 ------------NTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQN 132 (638)
T ss_dssp ------------SCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSS
T ss_pred ------------CEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccc
Confidence 1347899999999999999999999999844 888899999999999999999999999985
No 485
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=83.10 E-value=0.68 Score=50.43 Aligned_cols=42 Identities=10% Similarity=0.037 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHhcCCCcceEEEEEecCCCChhHHHhHHHHh
Q psy15197 8 DKLKKIEEYTREQAGGKGRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
++++++..+++........-++-|.|+||+|||++++.++..
T Consensus 27 ~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 27 EDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp HHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 456666666666665667779999999999999999999865
No 486
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=82.97 E-value=0.49 Score=56.13 Aligned_cols=22 Identities=32% Similarity=0.252 Sum_probs=19.9
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
-++|+|+.|+|||||++.|.+.
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5899999999999999999754
No 487
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=82.94 E-value=4.4 Score=41.94 Aligned_cols=67 Identities=16% Similarity=0.198 Sum_probs=42.4
Q ss_pred CCeEEEEEeCCCccchHHHHHHHHHHcCEEEEEEECCCCccccccCCchhhHHHHHHHHHh------CCCeEEEEEecCC
Q psy15197 249 KTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSL------GVNQLGVVINKLD 322 (902)
Q Consensus 249 ~~~~i~lIDTPG~~df~~~~~~~l~~aD~aIlVVDa~~g~~E~~~~~~~qt~~~l~~l~~~------~i~~iIVviNKiD 322 (902)
..+.+.|||||+..... +..++..||.+|+++.++.... ......+..+... +++.+-+|+|+.|
T Consensus 110 ~~yD~iiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~~s~-------~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~ 180 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSPL--TLNALAAAEGVVVPVQAEYYAL-------EGVAGLLATLEEVRAGLNPRLRLLGILVTMYD 180 (257)
T ss_dssp TTCSEEEEECCSSCCHH--HHHHHHHCSEEEEEEESSTHHH-------HHHHHHHHHHHHHHHHTCTTCEEEEEEEESBC
T ss_pred cCCCEEEEeCCCCCCHH--HHHHHHHCCeEEEEecCchHHH-------HHHHHHHHHHHHHHHHhCCCceEEEEEEEeEC
Confidence 46789999999875532 4566788999999999875321 1222333333321 3332237899998
Q ss_pred CC
Q psy15197 323 TV 324 (902)
Q Consensus 323 l~ 324 (902)
..
T Consensus 181 ~~ 182 (257)
T 1wcv_1 181 GR 182 (257)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 488
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=82.93 E-value=0.91 Score=47.71 Aligned_cols=26 Identities=15% Similarity=0.164 Sum_probs=22.5
Q ss_pred CcceEEEEEecCCCChhHHHhHHHHh
Q psy15197 24 KGRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 24 ~~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
....+|.|.|++|+|||||+.+|...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 44567999999999999999999755
No 489
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=82.87 E-value=0.66 Score=46.12 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=20.3
Q ss_pred EEEEEecCCCChhHHHhHHHHhc
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYLM 50 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~~ 50 (902)
.|+|.|.+||||||++..|....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 69999999999999999996543
No 490
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=82.57 E-value=0.67 Score=48.07 Aligned_cols=25 Identities=24% Similarity=0.407 Sum_probs=21.4
Q ss_pred ceEEEEEecCCCChhHHHhHHHHhc
Q psy15197 26 RLHLVVIGHVDAGKSTLMGHLLYLM 50 (902)
Q Consensus 26 ~~~v~v~G~~~~GKstL~~~ll~~~ 50 (902)
.++++|+|.+||||||++..|....
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999997553
No 491
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=82.51 E-value=0.64 Score=52.91 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=21.7
Q ss_pred cceEEEEEecCCCChhHHHhHHHHh
Q psy15197 25 GRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 25 ~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
..=.++|+|+.|+|||||++.|...
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3446999999999999999999765
No 492
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=82.48 E-value=0.72 Score=51.44 Aligned_cols=27 Identities=33% Similarity=0.393 Sum_probs=22.6
Q ss_pred CCcceEEEEEecCCCChhHHHhHHHHh
Q psy15197 23 GKGRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 23 ~~~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.+..-.|+|+|++|+|||||++.|...
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 344557999999999999999999754
No 493
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=82.23 E-value=0.7 Score=49.72 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=20.9
Q ss_pred ceEEEEEecCCCChhHHHhHHHHh
Q psy15197 26 RLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 26 ~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.-.|+++|+.|+||||++..|...
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999999754
No 494
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=82.22 E-value=0.42 Score=56.49 Aligned_cols=22 Identities=41% Similarity=0.582 Sum_probs=19.6
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.++|+|+.|||||||++.|++.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999643
No 495
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=82.05 E-value=1.1 Score=46.08 Aligned_cols=25 Identities=16% Similarity=0.124 Sum_probs=21.7
Q ss_pred cceEEEEEecCCCChhHHHhHHHHh
Q psy15197 25 GRLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 25 ~~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
....|.+.|++|+|||||+.+|...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4457999999999999999999754
No 496
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=81.99 E-value=0.7 Score=47.13 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=19.4
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
-++|+|++|+|||||+.+|+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999888754
No 497
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=81.98 E-value=0.57 Score=54.78 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.7
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.++|+|+.|||||||++.|.+.
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999754
No 498
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=81.88 E-value=2.1 Score=46.47 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=20.4
Q ss_pred ceEEEEEecCCCChhHHHhHHHHh
Q psy15197 26 RLHLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 26 ~~~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.--|+|+|..|+||||++..|...
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999654
No 499
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=81.84 E-value=0.6 Score=49.67 Aligned_cols=22 Identities=27% Similarity=0.367 Sum_probs=19.9
Q ss_pred eEEEEEecCCCChhHHHhHHHH
Q psy15197 27 LHLVVIGHVDAGKSTLMGHLLY 48 (902)
Q Consensus 27 ~~v~v~G~~~~GKstL~~~ll~ 48 (902)
..|+|+|.+||||||+++.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
No 500
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=81.59 E-value=0.55 Score=54.90 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=19.5
Q ss_pred EEEEEecCCCChhHHHhHHHHh
Q psy15197 28 HLVVIGHVDAGKSTLMGHLLYL 49 (902)
Q Consensus 28 ~v~v~G~~~~GKstL~~~ll~~ 49 (902)
.++|+|+.|||||||++.|.+.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3799999999999999999743
Done!