RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15197
(902 letters)
>1dgf_A Catalase; heme, NADPH, hydrogen peroxide, oxidoreductase; HET: HEM
NDP; 1.50A {Homo sapiens} SCOP: e.5.1.1 PDB: 1dgg_A*
1f4j_A* 1qqw_A* 1dgh_A* 1dgb_A* 3rgp_A* 3re8_A* 3rgs_A*
3nwl_A* 4blc_A* 1th2_A* 1th3_A* 1th4_A* 1tgu_A* 7cat_A*
8cat_A*
Length = 497
Score = 735 bits (1900), Expect = 0.0
Identities = 253/389 (65%), Positives = 305/389 (78%), Gaps = 1/389 (0%)
Query: 513 VTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWDLV 572
VTHDIT +KA +F IGK+TP+A RFSTV GE GSADT RDPRGFA+KFYTEDGNWDLV
Sbjct: 83 VTHDITKYSKAKVFEHIGKKTPIAVRFSTVAGESGSADTVRDPRGFAVKFYTEDGNWDLV 142
Query: 573 GNNTPIFFVRDPFRFIHFIHSQKRNPVTHLRDWDAFWDFISLLPETTHQVMILFSDRGIP 632
GNNTPIFF+RDP F FIHSQKRNP THL+D D WDF SL PE+ HQV LFSDRGIP
Sbjct: 143 GNNTPIFFIRDPILFPSFIHSQKRNPQTHLKDPDMVWDFWSLRPESLHQVSFLFSDRGIP 202
Query: 633 DGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLY 692
DG RHM+GYGSHTFKLVN + E VYCKFH++TDQGIKN+S + A +L+ DPDY IRDL+
Sbjct: 203 DGHRHMNGYGSHTFKLVNANGEAVYCKFHYKTDQGIKNLSVEDAARLSQEDPDYGIRDLF 262
Query: 693 DNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNYY 752
+ IA G +PSWTFYIQVMTF +A+T+ +NPFD+TK+WP D+PL+PVG +VL++NP NY+
Sbjct: 263 NAIATGKYPSWTFYIQVMTFNQAETFPFNPFDLTKVWPHKDYPLIPVGKLVLNRNPVNYF 322
Query: 753 AEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGANFNQIPVNCPYRVRVANY 812
AE+EQ+AF+P+N+ PGIE +PDKMLQGRL +Y DTH HRLG N+ IPVNCPYR RVANY
Sbjct: 323 AEVEQIAFDPSNMPPGIEASPDKMLQGRLFAYPDTHRHRLGPNYLHIPVNCPYRARVANY 382
Query: 813 QRDAPMAID-NQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKRYKTEDEDNFSQPRIL 871
QRD PM + NQ GAPNYYPNSF PE P + +G+V+R+ T ++DN +Q R
Sbjct: 383 QRDGPMCMQDNQGGAPNYYPNSFGAPEQQPSALEHSIQYSGEVRRFNTANDDNVTQVRAF 442
Query: 872 WSNVLDDAARDRMTTNIASVLKLAAPFIQ 900
+ NVL++ R R+ NIA LK A FIQ
Sbjct: 443 YVNVLNEEQRKRLCENIAGHLKDAQIFIQ 471
Score = 103 bits (259), Expect = 3e-23
Identities = 35/73 (47%), Positives = 48/73 (65%)
Query: 80 DETGEESSCEIPVDTTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERV 139
+ ++ + V TT AGNPV + + T+GP GP+ ++D + D++ HF ER PERV
Sbjct: 10 HWKEQRAAQKADVLTTGAGNPVGDKLNVITVGPRGPLLVQDVVFTDEMAHFDRERIPERV 69
Query: 140 VHAKGGGAFGYFE 152
VHAKG GAFGYFE
Sbjct: 70 VHAKGAGAFGYFE 82
Score = 88.0 bits (219), Expect = 3e-18
Identities = 28/45 (62%), Positives = 35/45 (77%)
Query: 160 TIGPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEV 204
T+GP GP+ ++D + D++ HF ER PERVVHAKG GAFGYFEV
Sbjct: 39 TVGPRGPLLVQDVVFTDEMAHFDRERIPERVVHAKGAGAFGYFEV 83
>2isa_A Catalase; peroxidase, heme, oxidoreductase, iron, hydrogen
peroxide; HET: OMT HEM; 1.97A {Vibrio salmonicida} PDB:
1m85_A* 1mqf_A* 1nm0_A* 2cag_A* 2cah_A* 1e93_A* 1h7k_A*
1h6n_A* 3hb6_A*
Length = 483
Score = 725 bits (1874), Expect = 0.0
Identities = 195/390 (50%), Positives = 246/390 (63%), Gaps = 4/390 (1%)
Query: 513 VTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWDLV 572
VTHDIT TKA IFS+IGK+T + ARFSTV GERG+AD RD RGF+LKFYTE+GNWDL
Sbjct: 65 VTHDITKYTKAKIFSDIGKKTDMFARFSTVAGERGAADAERDIRGFSLKFYTEEGNWDLA 124
Query: 573 GNNTPIFFVRDPFRFIHFIHSQKRNPVTHLRDWDAFWDFISLLPETTHQVMILFSDRGIP 632
GNNTP+FF+RDP +F H+ KR+P T++R WDF + LPE HQV I+ SDRGIP
Sbjct: 125 GNNTPVFFLRDPLKFPDLNHAVKRDPRTNMRSAKNNWDFWTSLPEALHQVTIVMSDRGIP 184
Query: 633 DGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLY 692
+RHMHG+GSHTF +N DNE + KFHF + QGIKN+S A +L D + RDL
Sbjct: 185 ATYRHMHGFGSHTFSFINSDNERYWVKFHFVSQQGIKNLSDAEAGELVGNDRESHQRDLL 244
Query: 693 DNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNYY 752
D+I +FP WT +Q+M +A T +NPFD+TK+WP D+PL+ VG L++NP NY+
Sbjct: 245 DSIDNQDFPKWTLKVQIMPEADAATVPYNPFDLTKVWPHKDYPLIEVGEFELNRNPQNYF 304
Query: 753 AEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGANFNQIPVNCPYRVRVANY 812
AE+EQ AFNP N++PGI +PDKMLQGRL +Y D +RLG N IPVN P R V +Y
Sbjct: 305 AEVEQAAFNPANVVPGISFSPDKMLQGRLFAYGDAQRYRLGVNHQHIPVNAP-RCPVHSY 363
Query: 813 QRDAPMAID-NQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKRYK-TEDEDNFSQPRI 870
RD M +D N Y PN P + N G + EDED FSQP
Sbjct: 364 HRDGAMRVDGNFGSTLGYEPNDQGQWAEQPDFSEPPLNLDGAAAHWDHREDEDYFSQPGD 423
Query: 871 LWSNVLDDAARDRMTTNIASVLKLAAPFIQ 900
L+ ++ + + N A L IQ
Sbjct: 424 LF-GLMTAEKQAILFDNTARNLNGVPKEIQ 452
Score = 99.5 bits (249), Expect = 5e-22
Identities = 29/59 (49%), Positives = 38/59 (64%)
Query: 94 TTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFE 152
TT+AG PV ++T G GP L+D ++L+KL HF E PER +HAKG GA+G F
Sbjct: 6 TTAAGCPVAHNQNVQTAGKRGPQLLQDVWFLEKLAHFDREVIPERRMHAKGSGAYGTFT 64
Score = 87.6 bits (218), Expect = 4e-18
Identities = 24/45 (53%), Positives = 30/45 (66%)
Query: 160 TIGPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEV 204
T G GP L+D ++L+KL HF E PER +HAKG GA+G F V
Sbjct: 21 TAGKRGPQLLQDVWFLEKLAHFDREVIPERRMHAKGSGAYGTFTV 65
>1si8_A Catalase; N-terminal ARM, anti-parallel beta-barrel, wrapping
region, terminal helical region, tetramer, heme group,
oxidoreducta; HET: HEM; 2.30A {Enterococcus faecalis}
SCOP: e.5.1.1
Length = 484
Score = 715 bits (1847), Expect = 0.0
Identities = 197/390 (50%), Positives = 263/390 (67%), Gaps = 5/390 (1%)
Query: 513 VTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWDLV 572
V+ + TKA SE+GK+TP+ ARFSTV GE GS+DT RDPRGFALKFYT++GN+DLV
Sbjct: 66 VSQSMAQYTKADFLSEVGKETPLFARFSTVAGELGSSDTLRDPRGFALKFYTDEGNYDLV 125
Query: 573 GNNTPIFFVRDPFRFIHFIHSQKRNPVTHLRDWDAFWDFISLLPETTHQVMILFSDRGIP 632
GNNTPIFF+RD +F FIHSQKRNP THL+ +A WDF S PE+ HQV IL SDRGIP
Sbjct: 126 GNNTPIFFIRDAIKFPDFIHSQKRNPRTHLKSPEAVWDFWSHSPESLHQVTILMSDRGIP 185
Query: 633 DGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLY 692
FRHMHG+GSHTFK VN E + K+HF+T+QGIKN+ Q A ++A +PD+ I DL+
Sbjct: 186 LSFRHMHGFGSHTFKWVNAAGEVFFVKYHFKTNQGIKNLESQLAEEIAGKNPDFHIEDLH 245
Query: 693 DNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNYY 752
+ I FPSWT +Q++ + +A T + FDVTK Q ++PL+ VG M L++NP NY+
Sbjct: 246 NAIENQEFPSWTLSVQIIPYADALTMKETLFDVTKTVSQKEYPLIEVGTMTLNRNPENYF 305
Query: 753 AEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGANFNQIPVNCPYRVRVANY 812
AE+EQ+ F+P N +PGIE +PDK+LQGRL +Y D H HR+GAN +Q+P+N + V NY
Sbjct: 306 AEVEQVTFSPGNFVPGIEASPDKLLQGRLFAYGDAHRHRVGANSHQLPINQA-KAPVNNY 364
Query: 813 QRDAPMAIDNQNGAPNYYPNSF-KGPEPTPRGAWSTYNATGDVKRYKTEDEDNFSQPRIL 871
Q+D M +N N NY PNS+ + P+ P S++ G+V Y D+F+Q L
Sbjct: 365 QKDGNMRFNNGNSEINYEPNSYTETPKEDPTAKISSFEVEGNVGNYSYNQ-DHFTQANAL 423
Query: 872 WSNVLDDAARDRMTTNIASVLKLAA-PFIQ 900
+ N+L ++ + NIA+ L I
Sbjct: 424 Y-NLLPSEEKENLINNIAASLGQVKNQEII 452
Score = 99.2 bits (248), Expect = 7e-22
Identities = 32/62 (51%), Positives = 38/62 (61%)
Query: 91 PVDTTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGY 150
TTS G+PV T G GPV ++D + L+KL HF ER PERVVHAKG GA G
Sbjct: 4 QHLTTSQGSPVGDNQNSLTAGEFGPVLIQDVHLLEKLAHFNRERVPERVVHAKGAGAHGI 63
Query: 151 FE 152
F+
Sbjct: 64 FK 65
Score = 87.2 bits (217), Expect = 5e-18
Identities = 27/45 (60%), Positives = 33/45 (73%)
Query: 160 TIGPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEV 204
T G GPV ++D + L+KL HF+ ER PERVVHAKG GA G F+V
Sbjct: 22 TAGEFGPVLIQDVHLLEKLAHFNRERVPERVVHAKGAGAHGIFKV 66
>1gwe_A Catalase; oxidoreductase, hdyrogen-peroxide:hydrogen peroxide
oxidoreductase; HET: HEM; 0.88A {Micrococcus luteus}
SCOP: e.5.1.1 PDB: 1gwh_A* 1hbz_A* 1gwf_A*
Length = 503
Score = 712 bits (1839), Expect = 0.0
Identities = 179/392 (45%), Positives = 241/392 (61%), Gaps = 6/392 (1%)
Query: 513 VTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWDLV 572
VT D++ TKA +F + G +T RFSTV GE GS DT RD RGFAL+FYTE+GN+DLV
Sbjct: 73 VTEDVSKYTKALVF-QPGTKTETLLRFSTVAGELGSPDTWRDVRGFALRFYTEEGNYDLV 131
Query: 573 GNNTPIFFVRDPFRFIHFIHSQKRNPVTHLRDWDAFWDFISLLPETTHQVMILFSDRGIP 632
GNNTPIFF+RDP +F HFI SQKR P + LRD WDF + PE+ HQV L RG+P
Sbjct: 132 GNNTPIFFLRDPMKFTHFIRSQKRLPDSGLRDATMQWDFWTNNPESAHQVTYLMGPRGLP 191
Query: 633 DGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLY 692
+R M+GYGSHT+ VN E + K+HF + QG+ N+S ATK+A + D+ +DL+
Sbjct: 192 RTWREMNGYGSHTYLWVNAQGEKHWVKYHFISQQGVHNLSNDEATKIAGENADFHRQDLF 251
Query: 693 DNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNYY 752
++IAKG+ P W YIQ + +EE KTYR+NPFD+TK Q D+P + VG + L++NP N++
Sbjct: 252 ESIAKGDHPKWDLYIQAIPYEEGKTYRFNPFDLTKTISQKDYPRIKVGTLTLNRNPENHF 311
Query: 753 AEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGANFNQIPVNCPYRVRVANY 812
A+IE AF+P+N +PGI +PD+ML GR +Y D ++R+GA+ NQ+PVN P + V NY
Sbjct: 312 AQIESAAFSPSNTVPGIGLSPDRMLLGRAFAYHDAQLYRVGAHVNQLPVNRP-KNAVHNY 370
Query: 813 QRDAPMAIDNQNGAPNYYPNSFKGPEPTPRGA-WSTYNATGDVKRYKT---EDEDNFSQP 868
+ M D+ Y PNS G + A G + R D+D+F Q
Sbjct: 371 AFEGQMWYDHTGDRSTYVPNSNGDSWSDETGPVDDGWEADGTLTREAQALRADDDDFGQA 430
Query: 869 RILWSNVLDDAARDRMTTNIASVLKLAAPFIQ 900
L V D RD +A LK +Q
Sbjct: 431 GTLVREVFSDQERDDFVETVAGALKGVRQDVQ 462
Score = 99 bits (250), Expect = 4e-22
Identities = 27/68 (39%), Positives = 35/68 (51%)
Query: 85 ESSCEIPVDTTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKG 144
+++ T G P S+ T+G GP+ L DT+ L+ HF PER HAKG
Sbjct: 5 KTTPHATGSTRQNGAPAVSDRQSLTVGSEGPIVLHDTHLLETHQHFNRMNIPERRPHAKG 64
Query: 145 GGAFGYFE 152
GAFG FE
Sbjct: 65 SGAFGEFE 72
Score = 87.3 bits (217), Expect = 5e-18
Identities = 24/45 (53%), Positives = 29/45 (64%)
Query: 160 TIGPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEV 204
T+G GP+ L DT+ L+ HF+ PER HAKG GAFG FEV
Sbjct: 29 TVGSEGPIVLHDTHLLETHQHFNRMNIPERRPHAKGSGAFGEFEV 73
>1qwl_A KATA catalase; beta barrel, azide complex, oxyferryl complex,
oxidoreductas; HET: HEM; 1.60A {Helicobacter pylori}
SCOP: e.5.1.1 PDB: 1qwm_A* 2a9e_A* 2iqf_A*
Length = 505
Score = 712 bits (1839), Expect = 0.0
Identities = 194/396 (48%), Positives = 253/396 (63%), Gaps = 10/396 (2%)
Query: 513 VTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWDLV 572
VT DIT TKA IFS++GK+T RFSTV GERGSAD RDPRGFA+K+YTE+GNWDLV
Sbjct: 68 VTKDITKYTKAKIFSKVGKKTECFFRFSTVAGERGSADAVRDPRGFAMKYYTEEGNWDLV 127
Query: 573 GNNTPIFFVRDPFRFIHFIHSQKRNPVTHLRDWDAFWDFISLLPETTHQVMILFSDRGIP 632
GNNTP+FF+RD +F FIH+QKR+P T+L + D WDF S +PE+ +QV + SDRGIP
Sbjct: 128 GNNTPVFFIRDAIKFPDFIHTQKRDPQTNLPNHDMVWDFWSNVPESLYQVTWVMSDRGIP 187
Query: 633 DGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLY 692
FRHM G+GSHTF L+N E + KFHF T QG+K+++ + A ++ DPD + RDL+
Sbjct: 188 KSFRHMDGFGSHTFSLINAKGERFWVKFHFHTMQGVKHLTNEEAAEIRKHDPDSNQRDLF 247
Query: 693 DNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNYY 752
D IA+G++P W IQVM E+AK YR++PFDVTKIW D+PL+ VG + L+KNP NY+
Sbjct: 248 DAIARGDYPKWKLSIQVMPEEDAKKYRFHPFDVTKIWYTQDYPLMEVGIVELNKNPENYF 307
Query: 753 AEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGANFNQIPVNCPYRVRVANY 812
AE+EQ AF P N++PGI +PD+MLQGRL SY DTH +RLG N+ QIPVN P R +
Sbjct: 308 AEVEQAAFTPANVVPGIGYSPDRMLQGRLFSYGDTHRYRLGVNYPQIPVNKP-RCPFHSS 366
Query: 813 QRDAPMAIDNQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVK-------RYKTEDEDNF 865
RD M NY P+S G + +N K Y+ +D D +
Sbjct: 367 SRDGYMQNGYYGSLQNYTPSSLPGYKEDKSARDPKFNLAHIEKEFEVWNWDYRADDSDYY 426
Query: 866 SQPRILWSNVLDDAARDRMTTNIASVLKLAA-PFIQ 900
+QP + L ++R+ I L I
Sbjct: 427 TQPGDYY-RSLPADEKERLHDTIGESLAHVTHKEIV 461
Score = 98.8 bits (247), Expect = 9e-22
Identities = 32/62 (51%), Positives = 40/62 (64%)
Query: 91 PVDTTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGY 150
TT+ G PV + + T GP GPV L+ T++L+KL F ER PERVVHAKG GA+G
Sbjct: 6 VKQTTAFGAPVWDDNNVITAGPRGPVLLQSTWFLEKLAAFDRERIPERVVHAKGSGAYGT 65
Query: 151 FE 152
F
Sbjct: 66 FT 67
Score = 87.3 bits (217), Expect = 5e-18
Identities = 28/45 (62%), Positives = 33/45 (73%)
Query: 160 TIGPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEV 204
T GP GPV L+ T++L+KL F ER PERVVHAKG GA+G F V
Sbjct: 24 TAGPRGPVLLQSTWFLEKLAAFDRERIPERVVHAKGSGAYGTFTV 68
>1m7s_A Catalase; beta barrel, alpha helical domain, oxidoreductase; HET:
HEM; 1.80A {Pseudomonas syringae} SCOP: e.5.1.1
Length = 484
Score = 704 bits (1819), Expect = 0.0
Identities = 154/388 (39%), Positives = 220/388 (56%), Gaps = 5/388 (1%)
Query: 513 VTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWDLV 572
+ DI+ L+KA +F G++TPV RFS+V S +T RDP GFA KFYT DGNWDLV
Sbjct: 64 ASADISDLSKATVFKS-GEKTPVFVRFSSVVHGNHSPETLRDPHGFATKFYTADGNWDLV 122
Query: 573 GNNTPIFFVRDPFRFIHFIHSQKRNPVTHLRDWDAFWDFISLLPETTHQVMILFSDRGIP 632
GNN P FF+RD +F +H+ K +P T+L + +DF S +PE T + +L+S+ G P
Sbjct: 123 GNNFPTFFIRDAIKFPDMVHAFKPDPRTNLDNDSRRFDFFSHVPEATRTLTLLYSNEGTP 182
Query: 633 DGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLY 692
G+R M G G H +KLVN E Y KFH+++ QGIKN+ P+ ++ + D + DL
Sbjct: 183 AGYRFMDGNGVHAYKLVNAKGEVHYVKFHWKSLQGIKNLDPKEVAQVQSKDYSHLTNDLV 242
Query: 693 DNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNYY 752
I KG+FP W Y+QV+ EE + ++P D TKIWP D P +G MVL+KN N++
Sbjct: 243 GAIKKGDFPKWDLYVQVLKPEELAKFDFDPLDATKIWP--DVPEKKIGQMVLNKNVDNFF 300
Query: 753 AEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGANFNQIPVNCPYRVRVANY 812
E EQ+A P NL+PGIEP+ D++LQGR+ SY DT ++RLGAN +PVN P +V V N
Sbjct: 301 QETEQVAMAPANLVPGIEPSEDRLLQGRVFSYADTQMYRLGANGLSLPVNQP-KVAVNNG 359
Query: 813 QRDAPMAIDNQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKRYKTEDEDNFSQPRILW 872
+D + + NY P+ + + +S +G ++ K E NF Q L+
Sbjct: 360 NQDGALNTGHTTSGVNYEPSRLEPRPADDKARYSELPLSGTTQQAKITREQNFKQAGDLY 419
Query: 873 SNVLDDAARDRMTTNIASVLKLAAPFIQ 900
+ + L +
Sbjct: 420 -RSYSAKEKTDLVQKFGESLADTLTESK 446
Score = 95.7 bits (239), Expect = 8e-21
Identities = 27/62 (43%), Positives = 30/62 (48%)
Query: 91 PVDTTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGY 150
T G V +T G GPV L+D L KL F ER PERVVHA+G G G
Sbjct: 2 DTLTRDNGAVVGDNQNSQTAGAQGPVLLQDVQLLQKLQRFDRERIPERVVHARGTGVKGE 61
Query: 151 FE 152
F
Sbjct: 62 FT 63
Score = 85.3 bits (212), Expect = 2e-17
Identities = 24/45 (53%), Positives = 26/45 (57%)
Query: 160 TIGPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEV 204
T G GPV L+D L KL F ER PERVVHA+G G G F
Sbjct: 20 TAGAQGPVLLQDVQLLQKLQRFDRERIPERVVHARGTGVKGEFTA 64
>2xq1_A Peroxisomal catalase; oxidoreductase, hydrogen peroxide
detoxification, PTS1; HET: HEM; 2.90A {Pichia angusta}
Length = 509
Score = 705 bits (1821), Expect = 0.0
Identities = 190/396 (47%), Positives = 254/396 (64%), Gaps = 8/396 (2%)
Query: 513 VTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWDLV 572
VT DIT + A +GK+T + RFSTV GE+GSADT RDPRGFA KFYTEDGN DLV
Sbjct: 79 VTDDITDVCSAKFLDTVGKKTRIFTRFSTVGGEKGSADTARDPRGFATKFYTEDGNLDLV 138
Query: 573 GNNTPIFFVRDPFRFIHFIHSQKRNPVTHLRDWDAFWDFISLLPETTHQVMILFSDRGIP 632
NNTPIFF+RDP +F HFIH+QKRNP T+L+D + FWD+++ E+ HQVM LFS+RG P
Sbjct: 139 YNNTPIFFIRDPIKFPHFIHTQKRNPATNLKDPNMFWDYLTANDESLHQVMYLFSNRGTP 198
Query: 633 DGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLY 692
+R M+GY HT+K N E VY + HF +QG+ N+ + A +LA DPD+S RDL+
Sbjct: 199 ASYRTMNGYSGHTYKWYNSKGEWVYVQVHFIANQGVHNLLDEEAGRLAGEDPDHSTRDLW 258
Query: 693 DNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNYY 752
+ I KG++PSW YIQ MT E++K ++ FD+TK+WP DFPL G L++NP NYY
Sbjct: 259 EAIEKGDYPSWECYIQTMTLEQSKKLPFSVFDLTKVWPHKDFPLRHFGRFTLNENPKNYY 318
Query: 753 AEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGANFNQIPVNCPY-RVRVAN 811
AE EQ+AF+P++ +PG+EP+ D +LQ RL SY DTH HRLG N++QIPVNCP
Sbjct: 319 AETEQIAFSPSHTVPGMEPSNDPVLQSRLFSYPDTHRHRLGPNYHQIPVNCPLKSGSFNP 378
Query: 812 YQRDAPMAIDNQNGAPNYYPNSFKGP-----EPTPRGAWSTYNATGDVKRYKTE-DEDNF 865
RD PM +D G Y N++ P P G TG+V Y E + ++
Sbjct: 379 INRDGPMCVDGNLGGTPNYANAYNCPIQYAVSPKASGNKPDEKYTGEVVPYHWEHTDYDY 438
Query: 866 SQPRILWSNV-LDDAARDRMTTNIASVLKLAAPFIQ 900
QP++ W + ++ + N+A+ + A FIQ
Sbjct: 439 FQPKMFWKVLGRTPGEQESLVKNVANHVSAADEFIQ 474
Score = 91.5 bits (228), Expect = 3e-19
Identities = 34/72 (47%), Positives = 39/72 (54%), Gaps = 10/72 (13%)
Query: 91 PVDTTSAGNPVDSETIIKTI----------GPHGPVPLEDTYYLDKLFHFAGERNPERVV 140
PV TTS G PV + I P GP+ L+D +D L HF ER PERVV
Sbjct: 7 PVFTTSQGCPVSDPFTTQRIPLDSTGYKYAPPIGPLLLQDFKLIDTLSHFDRERIPERVV 66
Query: 141 HAKGGGAFGYFE 152
HAKG GA+G FE
Sbjct: 67 HAKGAGAYGVFE 78
Score = 84.2 bits (209), Expect = 5e-17
Identities = 27/46 (58%), Positives = 31/46 (67%)
Query: 159 KTIGPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEV 204
K P GP+ L+D +D L HF ER PERVVHAKG GA+G FEV
Sbjct: 34 KYAPPIGPLLLQDFKLIDTLSHFDRERIPERVVHAKGAGAYGVFEV 79
>1a4e_A Catalase A; oxidoreductase, peroxidase; HET: HEM; 2.40A
{Saccharomyces cerevisiae} SCOP: e.5.1.1
Length = 488
Score = 700 bits (1809), Expect = 0.0
Identities = 188/398 (47%), Positives = 250/398 (62%), Gaps = 10/398 (2%)
Query: 513 VTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWDLV 572
VT DIT + +A+FS+IGK+T RFSTV G++GSADT RDPRGFA KFYTE+GN D V
Sbjct: 68 VTDDITDICGSAMFSKIGKRTKCLTRFSTVGGDKGSADTVRDPRGFATKFYTEEGNLDWV 127
Query: 573 GNNTPIFFVRDPFRFIHFIHSQKRNPVTHLRDWDAFWDFISL--LPETTHQVMILFSDRG 630
NNTP+FF+RDP +F HFIH+QKRNP T+LRD D FWDF++ HQVMILFSDRG
Sbjct: 128 YNNTPVFFIRDPSKFPHFIHTQKRNPQTNLRDADMFWDFLTTPENQVAIHQVMILFSDRG 187
Query: 631 IPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRD 690
P +R MHGY HT+K NK+ + Y + H +TDQGIKN++ + ATK+A ++PDY +D
Sbjct: 188 TPANYRSMHGYSGHTYKWSNKNGDWHYVQVHIKTDQGIKNLTIEEATKIAGSNPDYCQQD 247
Query: 691 LYDNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGN 750
L++ I GN+PSWT YIQ MT +AK ++ FD+TK+WPQ FPL VG +VL++NP N
Sbjct: 248 LFEAIQNGNYPSWTVYIQTMTERDAKKLPFSVFDLTKVWPQGQFPLRRVGKIVLNENPLN 307
Query: 751 YYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGANFNQIPVNCPYRVR-V 809
++A++EQ AF P+ +P E + D +LQ RL SY D H +RLG NF+QIPVNCPY +
Sbjct: 308 FFAQVEQAAFAPSTTVPYQEASADPVLQARLFSYADAHRYRLGPNFHQIPVNCPYASKFF 367
Query: 810 ANYQRDAPMAID-NQNGAPNYYPNSFKGPEPTPRGAWSTY--NATGDVKRYK---TEDED 863
RD PM ++ N P Y N + G Y + +
Sbjct: 368 NPAIRDGPMNVNGNFGSEPTYLANDKSYTYIQQDRPIQQHQEVWNGPAIPYHWATSPGDV 427
Query: 864 NFSQPRILWSNVLDDAA-RDRMTTNIASVLKLAAPFIQ 900
+F Q R L+ + + + NI ++ A P IQ
Sbjct: 428 DFVQARNLYRVLGKQPGQQKNLAYNIGIHVEGACPQIQ 465
Score = 99.6 bits (249), Expect = 4e-22
Identities = 30/62 (48%), Positives = 38/62 (61%)
Query: 91 PVDTTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGY 150
V T S GNP++ + + IG HGP+ L+D +D L HF E P+R HA G GAFGY
Sbjct: 6 RVVTNSTGNPINEPFVTQRIGEHGPLLLQDYNLIDSLAHFNRENIPQRNPHAHGSGAFGY 65
Query: 151 FE 152
FE
Sbjct: 66 FE 67
Score = 87.3 bits (217), Expect = 5e-18
Identities = 25/45 (55%), Positives = 30/45 (66%)
Query: 160 TIGPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEV 204
IG HGP+ L+D +D L HF+ E P+R HA G GAFGYFEV
Sbjct: 24 RIGEHGPLLLQDYNLIDSLAHFNRENIPQRNPHAHGSGAFGYFEV 68
>2j2m_A Catalase; functional class, oxidoreductase; HET: HEM; 2.4A
{Exiguobacterium oxidotolerans}
Length = 491
Score = 697 bits (1801), Expect = 0.0
Identities = 154/391 (39%), Positives = 227/391 (58%), Gaps = 5/391 (1%)
Query: 513 VTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWDLV 572
V + + TKAA E G + PV ARFSTV S +T RDPRGF++KFYTE+GNWD V
Sbjct: 68 VKNSMKKYTKAAFLQEEGTEVPVFARFSTVIHGTHSPETLRDPRGFSVKFYTEEGNWDFV 127
Query: 573 GNNTPIFFVRDPFRFIHFIHSQKRNPVTHLRDWDAFWDFISLLPETTHQVMILFSDRGIP 632
GNN P+FF+RD +F +HS K +P T+++D D +WDF++L PE+T+ +M +F+D GIP
Sbjct: 128 GNNLPVFFIRDAMKFPDMVHSLKPDPRTNIQDPDRYWDFMTLRPESTNMLMHIFTDEGIP 187
Query: 633 DGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLY 692
+R M G H+FK VN VY K + +G+ N+S AT++ D +++ D +
Sbjct: 188 ASYRKMRGSSVHSFKWVNAHGNTVYIKLRWVPKEGVHNLSADEATEVQGKDFNHASNDTF 247
Query: 693 DNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNYY 752
I G+FP W ++QV+ + + + ++P D TK W + P VG M L+KN NY+
Sbjct: 248 QAIENGDFPEWDLFVQVLDPADVENFDFDPLDATKDWFEDVIPFQHVGTMTLNKNVDNYF 307
Query: 753 AEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGANFNQIPVNCPYRVRVANY 812
AE E + FNP L+PG+ P+ DK+LQGRL SY DT HR+G N+ Q+P+NCP +V NY
Sbjct: 308 AETESVGFNPGVLVPGMLPSEDKLLQGRLFSYSDTQRHRIGPNYQQLPINCP-FAQVNNY 366
Query: 813 QRDAPMAIDNQNGAPNYYPNSFKG-PEPTPRGAWSTYNATGDVKRYK-TEDEDNFSQPRI 870
QRD M Q + NY PN ++ P+ TP T D+ E +NF Q
Sbjct: 367 QRDGAMPFKQQTSSVNYEPNRYQDEPKQTPEYTEDTQPLHDDIHGRLEIEKTNNFGQAGE 426
Query: 871 LWSNVLDDAARDRMTTNIASVL-KLAAPFIQ 900
++ + + + + N+ + L ++
Sbjct: 427 VY-RRMTEEEQMALLNNLVNDLQQVRHENTV 456
Score = 94.9 bits (237), Expect = 2e-20
Identities = 28/59 (47%), Positives = 36/59 (61%)
Query: 94 TTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFE 152
TT+ G P+ +T G GP LED ++K+ HF ER PERVVHA+G GA G F+
Sbjct: 9 TTNQGVPIGDNQNSRTAGRRGPTLLEDYQLIEKIAHFDRERVPERVVHARGFGAHGVFK 67
Score = 84.9 bits (211), Expect = 3e-17
Identities = 25/45 (55%), Positives = 30/45 (66%)
Query: 160 TIGPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEV 204
T G GP LED ++K+ HF ER PERVVHA+G GA G F+V
Sbjct: 24 TAGRRGPTLLEDYQLIEKIAHFDRERVPERVVHARGFGAHGVFKV 68
>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET:
HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3
Length = 715
Score = 642 bits (1658), Expect = 0.0
Identities = 148/398 (37%), Positives = 215/398 (54%), Gaps = 12/398 (3%)
Query: 513 VTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWDLV 572
V + LT A + ++ ++TPV RFSTV G RGSADT RD RGFA+KFYTE+GNWDLV
Sbjct: 83 VYESASDLTMAPVLTDTSRETPVFVRFSTVLGSRGSADTVRDVRGFAVKFYTEEGNWDLV 142
Query: 573 GNNTPIFFVRDPFRFIHFIHSQKRNPVTHLRD----WDAFWDFISLLPETTHQVMILFSD 628
GNN P+FF++D +F IH+ K P + + FWDF E TH SD
Sbjct: 143 GNNIPVFFIQDAIKFPDVIHAGKPEPHNEVPQAQSAHNNFWDFQFNHTEATHMFTWAMSD 202
Query: 629 RGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSI 688
R IP R M G+G +T+ L+N + + KFH+ + G+ ++ A KLA DPD+
Sbjct: 203 RAIPRSLRMMQGFGVNTYTLINAQGKRHFVKFHWTPELGVHSLVWDEALKLAGQDPDFHR 262
Query: 689 RDLYDNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNP 748
+DL++ I G +P W F IQ + E+ + ++ D TKIWP+ P+ +G M L++NP
Sbjct: 263 KDLWEAIENGAYPKWKFGIQAIAEEDEHKFDFDILDATKIWPEDLVPVRYIGEMELNRNP 322
Query: 749 GNYYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGANFNQIPVNCPYRVR 808
++ + EQ+AF ++++ GI + D +LQGR SY DT I RLG NF ++P+N P
Sbjct: 323 DEFFPQTEQIAFCTSHVVNGIGFSDDPLLQGRNFSYFDTQISRLGVNFQELPINRP-VCP 381
Query: 809 VANYQRDAPMAIDNQNGAPNYYPNSFKG--PEPTPRGAWSTYNA--TGDVKRYKTE-DED 863
V N+ RD M G NYYPN F P G + Y G R ++ ++
Sbjct: 382 VMNFNRDGAMRHTISRGTVNYYPNRFDACPPASLKEGGYLEYAQKVAGIKARARSAKFKE 441
Query: 864 NFSQPRILWSNVLDDAARDRMTTNIASVL-KLAAPFIQ 900
+FSQ ++ + N + + M L P +
Sbjct: 442 HFSQAQLFY-NSMSPIEKQHMINAFGFELDHCEDPVVY 478
Score = 86.7 bits (215), Expect = 2e-17
Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 94 TTSAGNPV---DSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGY 150
TT G D I + GP LED + +++ F ER PERVVHA+G GAFG
Sbjct: 21 TTDYGVKQTTADDWLRIVSDDKIGPSLLEDPFARERIMRFDHERIPERVVHARGSGAFGK 80
Query: 151 FE 152
F+
Sbjct: 81 FK 82
Score = 80.5 bits (199), Expect = 1e-15
Identities = 23/47 (48%), Positives = 30/47 (63%)
Query: 158 IKTIGPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEV 204
I + GP LED + +++ F ER PERVVHA+G GAFG F+V
Sbjct: 37 IVSDDKIGPSLLEDPFARERIMRFDHERIPERVVHARGSGAFGKFKV 83
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A
{Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A*
3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A*
4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A*
1gg9_A* 1ggf_A* ...
Length = 753
Score = 641 bits (1654), Expect = 0.0
Identities = 158/403 (39%), Positives = 230/403 (57%), Gaps = 17/403 (4%)
Query: 513 VTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWDLV 572
++ +TKA S+ K TPV RFSTV G GSADT RD RGFA KFYTE+G +DLV
Sbjct: 140 PYKSLSDITKADFLSDPNKITPVFVRFSTVQGGAGSADTVRDIRGFATKFYTEEGIFDLV 199
Query: 573 GNNTPIFFVRDPFRFIHFIHSQKRNPVTHLRDW----DAFWDFISLLPETTHQVMILFSD 628
GNNTPIFF++D +F F+H+ K P + D FWD++SL PET H VM SD
Sbjct: 200 GNNTPIFFIQDAHKFPDFVHAVKPEPHWAIPQGQSAHDTFWDYVSLQPETLHNVMWAMSD 259
Query: 629 RGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSI 688
RGIP +R M G+G HTF+L+N + + + +FH++ G ++ A KL DPD+
Sbjct: 260 RGIPRSYRTMEGFGIHTFRLINAEGKATFVRFHWKPLAGKASLVWDEAQKLTGRDPDFHR 319
Query: 689 RDLYDNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNP 748
R+L++ I G+FP + Q++ E+ + ++ D TK+ P+ P+ VG MVL++NP
Sbjct: 320 RELWEAIEAGDFPEYELGFQLIPEEDEFKFDFDLLDPTKLIPEELVPVQRVGKMVLNRNP 379
Query: 749 GNYYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGA-NFNQIPVNCPYRV 807
N++AE EQ AF+P +++PG++ T D +LQGRL+SY DT I RLG NF++IP+N P
Sbjct: 380 DNFFAENEQAAFHPGHIVPGLDFTNDPLLQGRLYSYTDTQISRLGGPNFHEIPINRP-TC 438
Query: 808 RVANYQRDAPMAIDNQNGAPNYYPNSFKGPEPTP------RGAWSTYNA--TGDVKRYKT 859
N+QRD + NY PNS P RG + +Y G+ R ++
Sbjct: 439 PYHNFQRDGMHRMGIDTNPANYEPNSINDNWPRETPPGPKRGGFESYQERVEGNKVRERS 498
Query: 860 E-DEDNFSQPRILWSNVLDDAARDRMTTNIASVL-KLAAPFIQ 900
+ +S PR+ W + + + L K+ P+I+
Sbjct: 499 PSFGEYYSHPRLFW-LSQTPFEQRHIVDGFSFELSKVVRPYIR 540
Score = 89.8 bits (223), Expect = 1e-18
Identities = 25/59 (42%), Positives = 33/59 (55%)
Query: 94 TTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFE 152
TT+ G + + G GP LED +K+ HF ER PER+VHA+G A GYF+
Sbjct: 81 TTNQGVRIADDQNSLRAGSRGPTLLEDFILREKIAHFDHERIPERIVHARGSAAHGYFQ 139
Score = 81.3 bits (201), Expect = 7e-16
Identities = 22/45 (48%), Positives = 27/45 (60%)
Query: 160 TIGPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEV 204
G GP LED +K+ HF ER PER+VHA+G A GYF+
Sbjct: 96 RAGSRGPTLLEDFILREKIAHFDHERIPERIVHARGSAAHGYFQP 140
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase,
peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Length = 688
Score = 635 bits (1640), Expect = 0.0
Identities = 145/403 (35%), Positives = 218/403 (54%), Gaps = 17/403 (4%)
Query: 513 VTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWDLV 572
D +++T A+ KQTPV RFSTV G RGSADT RD GFA +FYT++GN+D+V
Sbjct: 83 SYGDWSNITAASFLGAKDKQTPVFVRFSTVAGSRGSADTARDVHGFATRFYTDEGNFDIV 142
Query: 573 GNNTPIFFVRDPFRFIHFIHSQKRNPVTHLRD----WDAFWDFISLLPETTHQVMILFSD 628
GNN P+FF++D RF IHS K +P + D+ WDF S P H + S
Sbjct: 143 GNNIPVFFIQDAIRFPDLIHSVKPSPDNEVPQAATAHDSAWDFFSSQPSALHTLFWAMSG 202
Query: 629 RGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSI 688
GIP +RHM G+G HTF+LV +D + K+H++T QG + + A LA + D+
Sbjct: 203 NGIPRSYRHMDGFGIHTFRLVTEDGKSKLVKWHWKTKQGKAALVWEEAQVLAGKNADFHR 262
Query: 689 RDLYDNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNP 748
+DL+D I GN PSW +Q++ ++A+ Y ++ D TK P+ PL +G M L++NP
Sbjct: 263 QDLWDAIESGNAPSWELAVQLIDEDKAQAYGFDLLDPTKFLPEEFAPLQVLGEMTLNRNP 322
Query: 749 GNYYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRL-GANFNQIPVNCPYRV 807
NY+AE EQ++F P +++ G++ T D +LQGRL+SY+DT ++R G NF Q+P+N P
Sbjct: 323 MNYFAETEQISFQPGHIVRGVDFTEDPLLQGRLYSYLDTQLNRHRGPNFEQLPINRP-VS 381
Query: 808 RVANYQRDAPMAIDNQNGAPNYYPNSFKGPEPTPRGAWS--------TYNATGDVKRYKT 859
V N RD +Y P+ P A+G + R +
Sbjct: 382 GVHNNHRDGQGQAWIHKNIHHYSPSYLNKGYPAQANQTVGRGFFTTPGRTASGVLNRELS 441
Query: 860 E-DEDNFSQPRILWSNVLDDAARDRMTTNIASVL-KLAAPFIQ 900
+D+++QPR+ + N L + + I + ++
Sbjct: 442 ATFDDHYTQPRLFF-NSLTPVEQQFVINAIRFEASHVTNEQVK 483
Score = 90.5 bits (225), Expect = 8e-19
Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 94 TTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFE 152
TT G ++ + + G G LED + KL HF ER PERVVHA+G GA G F
Sbjct: 25 TTDFGGNIEEQFSL-KAGGRGSTLLEDFIFRQKLQHFDHERIPERVVHARGAGAHGIFT 82
Score = 81.3 bits (201), Expect = 6e-16
Identities = 23/45 (51%), Positives = 25/45 (55%)
Query: 160 TIGPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEV 204
G G LED + KL HF ER PERVVHA+G GA G F
Sbjct: 39 KAGGRGSTLLEDFIFRQKLQHFDHERIPERVVHARGAGAHGIFTS 83
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium
janthinellum} PDB: 2xf2_A*
Length = 688
Score = 533 bits (1375), Expect = e-179
Identities = 142/403 (35%), Positives = 220/403 (54%), Gaps = 17/403 (4%)
Query: 513 VTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWDLV 572
D ++LT A+ S GK+TP+ RFSTV G RGSADT RD GFA +FYT++GN+D+V
Sbjct: 75 SYGDWSNLTAASFLSAEGKETPMFTRFSTVAGSRGSADTARDVHGFATRFYTDEGNFDIV 134
Query: 573 GNNTPIFFVRDPFRFIHFIHSQKRNPVTHLRD----WDAFWDFISLLPETTHQVMILFSD 628
GNN P+FF++D F IH+ K + D+ WDF S P H ++ +
Sbjct: 135 GNNIPVFFIQDAILFPDLIHAVKPRGDNQIPQAATAHDSAWDFFSQQPSVLHTLLWAXAG 194
Query: 629 RGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSI 688
GIP FRH++G+G HTF+LV D + KFH++ QG + + A + A + D+
Sbjct: 195 HGIPRSFRHVNGFGVHTFRLVTDDGKTKLVKFHWKGLQGKASFVWEEAQQTAGKNADFXR 254
Query: 689 RDLYDNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNP 748
+DL+ +I G FP W +Q+M ++ + ++ D TKI P+ P+ +G M L++NP
Sbjct: 255 QDLFQSIQAGRFPEWELGVQIMQEQDQLKFGFDLLDPTKIVPEELVPVTILGKMQLNRNP 314
Query: 749 GNYYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRL-GANFNQIPVNCPYRV 807
NY+AE EQ+ F P +++ G++ T D +LQGRL SY+DT ++R G NF Q+P+N P R
Sbjct: 315 XNYFAETEQVMFQPGHIVRGVDFTEDPLLQGRLFSYLDTQLNRHGGPNFEQLPINRP-RA 373
Query: 808 RVANYQRDAPMAIDNQNGAPNYYPNSFKGPEPTPRGAWS--------TYNATGDVKRYKT 859
+ N RD + Y PN+ P A+G ++R +
Sbjct: 374 PIHNNNRDGAGQMFIPLDPNAYSPNTENKGSPKQANETVGKGFFTAPERTASGKLQRTLS 433
Query: 860 E-DEDNFSQPRILWSNVLDDAARDRMTTNIASVL-KLAAPFIQ 900
E+N+SQPR+ W N L +A ++ + +++ ++
Sbjct: 434 TTFENNWSQPRLFW-NSLVNAQKEFIVDAXRFETSNVSSSVVR 475
Score = 87.7 bits (217), Expect = 6e-18
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 94 TTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFE 152
T++ G P+ E + + G G L+D + +K+ F ER PER VHA+G GA G F
Sbjct: 17 TSNVGGPIQDENSL-SAGQRGATLLQDFIFREKIQRFDHERVPERAVHARGTGAHGTFT 74
Score = 80.8 bits (199), Expect = 9e-16
Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 160 TIGPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEV 204
+ G G L+D + +K+ F ER PER VHA+G GA G F
Sbjct: 31 SAGQRGATLLQDFIFREKIQRFDHERVPERAVHARGTGAHGTFTS 75
Score = 33.4 bits (76), Expect = 0.42
Identities = 9/45 (20%), Positives = 15/45 (33%)
Query: 547 GSADTNRDPRGFALKFYTEDGNWDLVGNNTPIFFVRDPFRFIHFI 591
A+ F ++ G L P+ + D FRF +
Sbjct: 591 DGAEGLFGADSFTVEPSAGSGASTLYPAGRPLNILLDAFRFGKTV 635
>3e4w_A Putative uncharacterized protein; heme enzyme, catalase,
peroxidase, oxidoreductase; HET: HEM; 1.80A
{Mycobacterium avium subsp} PDB: 3e4y_A*
Length = 320
Score = 499 bits (1287), Expect = e-171
Identities = 63/290 (21%), Positives = 103/290 (35%), Gaps = 20/290 (6%)
Query: 513 VTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWDLV 572
T D L+ A G P RFS G D RG A+KF DG+ V
Sbjct: 47 ATRDAVMLSAAPHLD--GSTVPALIRFSNGSGNPKQRDGAPGVRGMAVKFTLPDGSTTDV 104
Query: 573 GNNTPIFFVRD-PFRFIHFIHSQKRNPVTHLRDWDAFWDFISLLPETTHQVMILFSDRGI 631
T V P FI + + + T LR + P + +L I
Sbjct: 105 SAQTARLLVSSTPEGFIDLLKAMRPGLTTPLR----LATHLLTHPRLLGALPLLREANRI 160
Query: 632 PDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDL 691
P + +G H F+ + D + ++H + +S A DPD+ +L
Sbjct: 161 PASYATTEYHGLHAFRWIAADGSARFVRYHLVPTAAEEYLSASDA---RGKDPDFLTDEL 217
Query: 692 YDNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNY 751
+ G + F +Q+ ++ D + W ++ VG + +
Sbjct: 218 AARLQDGPV-RFDFRVQIAGPTDS------TVDPSSAWQ--STQIVTVGTVTITGPDTER 268
Query: 752 YAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGAN-FNQIP 800
+ + F+P + GIEP+ D +L+ R Y + R G + Q P
Sbjct: 269 EHGGDIVVFDPMRVTDGIEPSDDPVLRFRTLVYSASVKLRTGVDRGAQAP 318
Score = 63.8 bits (156), Expect = 6e-11
Identities = 11/41 (26%), Positives = 15/41 (36%)
Query: 164 HGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEV 204
H L +D + G + R +HAKG G F
Sbjct: 7 HMSGGLTPDQAIDAIRGTGGAQPGCRALHAKGTLYRGTFTA 47
Score = 61.5 bits (150), Expect = 4e-10
Identities = 11/40 (27%), Positives = 15/40 (37%)
Query: 113 HGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFE 152
H L +D + G + R +HAKG G F
Sbjct: 7 HMSGGLTPDQAIDAIRGTGGAQPGCRALHAKGTLYRGTFT 46
>1u5u_A Allene oxide synthase-lipoxygenase protein; catalase, heme,
eicosanoid, fusion PR lyase; HET: HEM; 2.00A {Plexaura
homomalla} SCOP: e.5.1.2
Length = 374
Score = 418 bits (1075), Expect = e-139
Identities = 49/314 (15%), Positives = 99/314 (31%), Gaps = 45/314 (14%)
Query: 513 VTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTED--GNWD 570
+ +D + F+ G+ P R + + + D D R F++KF D G D
Sbjct: 79 IVNDPK-FPEHEFFTA-GRTFPARLRHANL---KYPDDAGADARSFSIKFADSDSDGPLD 133
Query: 571 LVGNNTPIFFVRDPFRFIHFIHSQKRNPVTHLRDWDAFWDFISLLPETTHQVMILFSDRG 630
+V N + F+ ++ + +++ P + ++ R
Sbjct: 134 IVMNTGEANIFWNSPSLEDFVPVEEGDAAE---------EYVYKNPYYYYNLVEAL--RR 182
Query: 631 IPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQ---------------T 675
PD F H++ Y T KD + YC++ + +
Sbjct: 183 APDTFAHLYYYSQVTMPFKAKDGKVRYCRYRALPGDVDIKEEDESGRLTEEEQRKIWIFS 242
Query: 676 ATKLAATDPDYSIRDLYDNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFP 735
+ DY ++ + + KG ++ IQ+ T F +W + P
Sbjct: 243 RHENEKRPDDYLRKEYVERLQKGPV-NYRLQIQIHEASPDDTA--TIFHAGILWDKETHP 299
Query: 736 LLPVGHMVLDKNPGNYYAEIEQLAFNPNNLIPGIEPTPDK-------MLQGRLHSYIDTH 788
+ + + +E+ AFN N + K + + R+ Y
Sbjct: 300 WFDLAKVSIKTPLSP--DVLEKTAFNIANQPASLGLLEAKSPEDYNSIGELRVAVYTWVQ 357
Query: 789 IHRLGANFNQIPVN 802
R + +P
Sbjct: 358 HLRKLKIGSLVPAG 371
Score = 54.0 bits (130), Expect = 9e-08
Identities = 6/45 (13%), Positives = 13/45 (28%)
Query: 160 TIGPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEV 204
+ + L+ + + + R H G G G +
Sbjct: 35 PVFGGLKLKLKKEKFKTLFTLGTTLKGFRRATHTVGTGGIGEITI 79
Score = 52.9 bits (127), Expect = 2e-07
Identities = 13/90 (14%), Positives = 23/90 (25%), Gaps = 15/90 (16%)
Query: 109 TIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFEDRETIIKTIGPHGPVP 168
+ + L+ + + R H G G G
Sbjct: 35 PVFGGLKLKLKKEKFKTLFTLGTTLKGFRRATHTVGTGGIGEIT---------------I 79
Query: 169 LEDTYYLDKLFHFSGERNPERVVHAKGGGA 198
+ D + + F +G P R+ HA
Sbjct: 80 VNDPKFPEHEFFTAGRTFPARLRHANLKYP 109
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain,
beta-barrel, translational GTPase, D structural
genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Length = 483
Score = 419 bits (1080), Expect = e-138
Identities = 97/313 (30%), Positives = 157/313 (50%), Gaps = 18/313 (5%)
Query: 235 RGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFE 294
RG+T+ + S F T T++DAPGH+DF+PN I G +QAD+A+L VD + FE+GF+
Sbjct: 95 RGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFD 154
Query: 295 SGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEY 354
GQT+EH LL SLG++ L + +NK+D V WSQ RF+EI +KL +L GF + +I +
Sbjct: 155 LDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINW 214
Query: 355 VPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNFKTP------SRPLTKPLRMSVSDI 408
VP SG +GE + + WY+GP L+ ++N P SV +I
Sbjct: 215 VPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLFSVLEI 274
Query: 409 Y---KSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYV--------DEMSVSAA 457
K++ ++G++E+G I GE + + P + V + V + A
Sbjct: 275 IPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVA 334
Query: 458 YAGDNVSVTLLNYDQQNVSVGFLLSELSH-PCPVSSKFEARIVVFNITTPITIGYPVTHD 516
GD V++ L +++ G L + + + + F + F++ P+ G P
Sbjct: 335 IKGDFVTLKLRKAYPEDIQNGDLAASVDYSSIHSAQCFVLELTTFDMNRPLLPGTPFILF 394
Query: 517 ITHLTKAAIFSEI 529
I + A +
Sbjct: 395 IGVKEQPARIKRL 407
Score = 122 bits (309), Expect = 1e-29
Identities = 36/82 (43%), Positives = 49/82 (59%)
Query: 4 KVNKDKLKKIEEYTREQAGGKGRLHLVVIGHVDAGKSTLMGHLLYLMGRVSAREIHKHET 63
K KK + + L VV+GHVDAGKSTLMG LLY + V+ ++ K +
Sbjct: 11 TTVPTKPKKPHDISAFVKSALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQR 70
Query: 64 ESKKLGKQSFMYAWILDETGEE 85
ES+ +GK SF +AWI+D+T EE
Sbjct: 71 ESETMGKSSFKFAWIMDQTNEE 92
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein
complex, translation regulation; 2.74A
{Schizosaccharomyces pombe}
Length = 592
Score = 422 bits (1087), Expect = e-138
Identities = 117/301 (38%), Positives = 168/301 (55%), Gaps = 5/301 (1%)
Query: 235 RGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFE 294
RG+TMDV + FE+ K + DAPGH+DFI MI GA+ AD A+LVVD+++ FE GF
Sbjct: 239 RGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFL 298
Query: 295 SGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFL-KQAGFRDSDIE 353
GQTREHA L+R+LG++++ V +NKLD +SWS+DRFQEI + FL K GF+ S++
Sbjct: 299 ENGQTREHAYLLRALGISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVH 358
Query: 354 YVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNFKTPSRPLTKPLRMSVSDIYKSTG 413
+VP S ++G NL L WY GP LL +D P +P KPLR+S+ D+Y+S
Sbjct: 359 FVPISAISGTNLIQKDS-SDLYKWYKGPTLLSALDQLVPPEKPYRKPLRLSIDDVYRSPR 417
Query: 414 SGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYVD-EMSVSAAYAGDNVSVTLLNYDQ 472
S + GRVE G + + + E VK V + + S + A AGD V++ L + +
Sbjct: 418 SV-TVTGRVEAGNVQVNQVLYDVSSQEDAYVKNVIRNSDPSSTWAVAGDTVTLQLADIEV 476
Query: 473 QNVSVGFLLSELSHPCPVSSKFEARIVVFNITTPITIGYPVTHDITHLTKAAIFSEIGKQ 532
+ G +LS +P F A I F+I PI G + + + +I
Sbjct: 477 NQLRPGDILSNYENPVRRVRSFVAEIQTFDIHGPILSGSTLVLHLGRTVTSVSL-KIVTV 535
Query: 533 T 533
Sbjct: 536 N 536
Score = 119 bits (299), Expect = 6e-28
Identities = 34/85 (40%), Positives = 54/85 (63%), Gaps = 2/85 (2%)
Query: 1 MEGKVNKDKLKKIEEYTREQAGGKGRLHLVVIGHVDAGKSTLMGHLLYLMGRVSAREIHK 60
++ + D + E + EQ+ K +HLVV GHVD+GKST++G +++ +G +++R + K
Sbjct: 154 IKKQNPTDLVSVPEIF--EQSNPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQK 211
Query: 61 HETESKKLGKQSFMYAWILDETGEE 85
E+ GK SF YAW+LD T EE
Sbjct: 212 LHNEAANSGKGSFSYAWLLDTTEEE 236
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay,
ribosomal protein,hydrolase; 9.50A {Saccharomyces
cerevisiae}
Length = 611
Score = 421 bits (1083), Expect = e-137
Identities = 97/313 (30%), Positives = 157/313 (50%), Gaps = 18/313 (5%)
Query: 235 RGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFE 294
RG+T+ + S F T T++DAPGH+DF+PN I G +QAD+A+L VD + FE+GF+
Sbjct: 229 RGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFD 288
Query: 295 SGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEY 354
GQT+EH LL SLG++ L + +NK+D V WSQ RF+EI +KL +L GF + +I +
Sbjct: 289 LDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINW 348
Query: 355 VPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNFKT------PSRPLTKPLRMSVSDI 408
VP SG +GE + + WY+GP L+ ++N P SV +I
Sbjct: 349 VPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLFSVLEI 408
Query: 409 Y---KSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYV--------DEMSVSAA 457
K++ ++G++E+G I GE + + P + V + V + A
Sbjct: 409 IPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVA 468
Query: 458 YAGDNVSVTLLNYDQQNVSVGFLLSELSH-PCPVSSKFEARIVVFNITTPITIGYPVTHD 516
GD V++ L +++ G L + + + + F + F++ P+ G P
Sbjct: 469 IKGDFVTLKLRKAYPEDIQNGDLAASVDYSSIHSAQCFVLELTTFDMNRPLLPGTPFILF 528
Query: 517 ITHLTKAAIFSEI 529
I + A +
Sbjct: 529 IGVKEQPARIKRL 541
Score = 122 bits (307), Expect = 7e-29
Identities = 36/84 (42%), Positives = 49/84 (58%)
Query: 2 EGKVNKDKLKKIEEYTREQAGGKGRLHLVVIGHVDAGKSTLMGHLLYLMGRVSAREIHKH 61
K KK + + L VV+GHVDAGKSTLMG LLY + V+ ++ K
Sbjct: 143 YKTTVPTKPKKPHDISAFVKSALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKL 202
Query: 62 ETESKKLGKQSFMYAWILDETGEE 85
+ ES+ +GK SF +AWI+D+T EE
Sbjct: 203 QRESETMGKSSFKFAWIMDQTNEE 226
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase,
alpha/beta structure, protein biosynthesis, translation;
HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Length = 435
Score = 394 bits (1015), Expect = e-129
Identities = 105/297 (35%), Positives = 179/297 (60%), Gaps = 5/297 (1%)
Query: 235 RGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFE 294
RG+T+++ +FETK + T++DAPGH+DF+ NMITGA+QAD A+LVV A +GE+E G
Sbjct: 68 RGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMS 127
Query: 295 SGGQTREHALLVRSLGVNQLGVVINKLD--TVSWSQDRFQEIVTKLGAFLKQAGFRDSDI 352
GQTREH +L +++G++QL V +NK+D + + R++EIV ++ F++ GF + +
Sbjct: 128 VEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKV 187
Query: 353 EYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNFKTPSRPLTKPLRMSVSDIYKST 412
+VP +G+N+T S WY+GP L + +D + P +P+ KPLR+ + D+Y +
Sbjct: 188 RFVPVVAPSGDNITHKS---ENMKWYNGPTLEEYLDQLELPPKPVDKPLRIPIQDVYSIS 244
Query: 413 GSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYVDEMSVSAAYAGDNVSVTLLNYDQ 472
G G GRVE+GV+ G+K++ P +V V+++ + A GDN+ + ++
Sbjct: 245 GVGTVPVGRVESGVLKVGDKIVFMPAGKVGEVRSIETHHTKMDKAEPGDNIGFNVRGVEK 304
Query: 473 QNVSVGFLLSELSHPCPVSSKFEARIVVFNITTPITIGYPVTHDITHLTKAAIFSEI 529
+++ G ++ ++P V+ +F ARI+V T + GY + + A SE+
Sbjct: 305 KDIKRGDVVGHPNNPPTVADEFTARIIVVWHPTALANGYTPVLHVHTASVACRVSEL 361
Score = 100 bits (250), Expect = 3e-22
Identities = 30/70 (42%), Positives = 45/70 (64%)
Query: 24 KGRLHLVVIGHVDAGKSTLMGHLLYLMGRVSAREIHKHETESKKLGKQSFMYAWILDETG 83
K L+L+VIGHVD GKSTL+G LL G + + + + E +KKLGK+S +A++LD
Sbjct: 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLK 63
Query: 84 EESSCEIPVD 93
EE + ++
Sbjct: 64 EERERGVTIN 73
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit;
translation termination, peptide release, GTPase,
translatio; 2.35A {Schizosaccharomyces pombe} SCOP:
b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Length = 467
Score = 383 bits (985), Expect = e-124
Identities = 113/300 (37%), Positives = 182/300 (60%), Gaps = 9/300 (3%)
Query: 235 RGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFE 294
+G T++VG++ FET+ + +LLDAPGHK ++ NMI GA+QAD+ +LV+ A RGEFE GFE
Sbjct: 105 KGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFE 164
Query: 295 SGGQTREHALLVRSLGVNQLGVVINKLD--TVSWSQDRFQEIVTKLGAFLKQ-AGF-RDS 350
GGQTREHA+L R+ G+N L VVINK+D +V WS++R++E V KL FL++ AG+ +
Sbjct: 165 RGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKT 224
Query: 351 DIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNFKTPSRPLTKPLRMSVSDIYK 410
D++Y+P S TG+N+ ++ WY GP LL+ +D+ R + P M ++ YK
Sbjct: 225 DVKYMPVSAYTGQNVKDRVD-SSVCPWYQGPSLLEYLDSMTHLERKVNAPFIMPIASKYK 283
Query: 411 STGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVY-VDEMSVSAAYAGDNVSVTLLN 469
G + G++E G I V+V P N+ V A+Y + +S++ GD V + +
Sbjct: 284 --DLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSICGDQVRLRVRG 341
Query: 470 YDQQNVSVGFLLSELSHPCPVSSKFEARIVVFNITTPITIGYPVTHDITHLTKAAIFSEI 529
D +V G++L+ +P +++F A+I + + + +T GY I + F+++
Sbjct: 342 -DDSDVQTGYVLTSTKNPVHATTRFIAQIAILELPSILTTGYSCVMHIHTAVEEVSFAKL 400
Score = 111 bits (279), Expect = 7e-26
Identities = 35/90 (38%), Positives = 54/90 (60%)
Query: 4 KVNKDKLKKIEEYTREQAGGKGRLHLVVIGHVDAGKSTLMGHLLYLMGRVSAREIHKHET 63
+ D ++++ + GK +++V IGHVDAGKSTL G++L+L G V R + K E
Sbjct: 21 EDATDLQNEVDQELLKDMYGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIER 80
Query: 64 ESKKLGKQSFMYAWILDETGEESSCEIPVD 93
E+K+ GK+S+ +W LD T EE V+
Sbjct: 81 EAKEAGKESWYLSWALDSTSEEREKGKTVE 110
>1f60_A Elongation factor EEF1A; protein-protein complex, translation;
1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1
c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Length = 458
Score = 361 bits (928), Expect = e-116
Identities = 118/305 (38%), Positives = 162/305 (53%), Gaps = 10/305 (3%)
Query: 235 RGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFE 294
RGIT+D+ +FET +T++DAPGH+DFI NMITG +QAD A+L++ GEFE G
Sbjct: 69 RGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGIS 128
Query: 295 SGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEY 354
GQTREHALL +LGV QL V +NK+D+V W + RFQEIV + F+K+ G+ + +
Sbjct: 129 KDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPF 188
Query: 355 VPCSGLTGENLTTPSQ---------VPALTSWYSGPCLLDVIDNFKTPSRPLTKPLRMSV 405
VP SG G+N+ + G LL+ ID + PSRP KPLR+ +
Sbjct: 189 VPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDAIEQPSRPTDKPLRLPL 248
Query: 406 SDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYVDEMSVSAAYAGDNVSV 465
D+YK G G GRVETGVI G V P T VK+V + + GDNV
Sbjct: 249 QDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEMHHEQLEQGVPGDNVGF 308
Query: 466 TLLNYDQQNVSVGFLLSELSH-PCPVSSKFEARIVVFNITTPITIGYPVTHDITHLTKAA 524
+ N + + G + + + P + F A ++V N I+ GY D A
Sbjct: 309 NVKNVSVKEIRRGNVCGDAKNDPPKGCASFNATVIVLNHPGQISAGYSPVLDCHTAHIAC 368
Query: 525 IFSEI 529
F E+
Sbjct: 369 RFDEL 373
Score = 97.4 bits (243), Expect = 2e-21
Identities = 35/75 (46%), Positives = 46/75 (61%)
Query: 21 AGGKGRLHLVVIGHVDAGKSTLMGHLLYLMGRVSAREIHKHETESKKLGKQSFMYAWILD 80
K +++VVIGHVD+GKST GHL+Y G + R I K E E+ +LGK SF YAW+LD
Sbjct: 2 GKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLD 61
Query: 81 ETGEESSCEIPVDTT 95
+ E I +D
Sbjct: 62 KLKAERERGITIDIA 76
>3dy5_A Allene oxide synthase-lipoxygenase protein; fusion protein,
BI-functional enzyme, dioxygenase, fatty ACI
biosynthesis, heme, iron; HET: HEM; 3.51A {Plexaura
homomalla}
Length = 1066
Score = 320 bits (821), Expect = 1e-94
Identities = 55/375 (14%), Positives = 112/375 (29%), Gaps = 45/375 (12%)
Query: 513 VTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFY--TEDGNWD 570
+ +D + F+ G+ P R + + + D D R F++KF DG D
Sbjct: 79 IVNDPK-FPEHEFFTA-GRTFPARLRHANL---KYPDDAGADARSFSIKFADSDSDGPLD 133
Query: 571 LVGNNTPIFFVRDPFRFIHFIHSQKRNPVTHLRDWDAFWDFISLLPETTHQVMILFSDRG 630
+V N + F+ ++ + +++ P + ++ + R
Sbjct: 134 IVMNTGEANIFWNSPSLEDFVPVEEGDAAE---------EYVYKNPYYYYNLVE--ALRR 182
Query: 631 IPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQ---------------T 675
PD F H++ Y T KD + YC++ + +
Sbjct: 183 APDTFAHLYYYSQVTMPFKAKDGKVRYCRYRALPGDVDIKEEDESGRLTEEEQRKIWIFS 242
Query: 676 ATKLAATDPDYSIRDLYDNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFP 735
+ DY ++ + + KG ++ IQ+ T F +W + P
Sbjct: 243 RHENEKRPDDYLRKEYVERLQKGPV-NYRLQIQIHEASPDDTA--TIFHAGILWDKETHP 299
Query: 736 LLPVGHMVLDKNPGNYYAEIEQLAFNPNNLIPGIEPTPDK-------MLQGRLHSYIDTH 788
+ + + +E+ AFN N + K + + R+ Y
Sbjct: 300 WFDLAKVSIKTPLSP--DVLEKTAFNIANQPASLGLLEAKSPEDYNSIGELRVAVYTWVQ 357
Query: 789 IHRLGANFNQIPVNCPYRVRVANYQRDAPMAIDNQNGAPNYYPNSFKGPEPTPRGAWSTY 848
R + +P V D A + + +
Sbjct: 358 HLRKLKIGSLVPAGQNAIYNVEVETGDREHAGTDATITIRITGAKGRTDYLKLDKWFHND 417
Query: 849 NATGDVKRYKTEDED 863
G ++Y + D
Sbjct: 418 FEAGSKEQYTVQGFD 432
Score = 48.3 bits (114), Expect = 1e-05
Identities = 12/60 (20%), Positives = 17/60 (28%), Gaps = 6/60 (10%)
Query: 151 FEDRETIIKTIGPHGPV------PLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEV 204
E R T P PV L+ + + + R H G G G +
Sbjct: 20 LEKRIKDEHTPPPDSPVFGGLKLKLKKEKFKTLFTLGTTLKGFRRATHTVGTGGIGEITI 79
Score = 46.4 bits (109), Expect = 5e-05
Identities = 17/96 (17%), Positives = 25/96 (26%), Gaps = 21/96 (21%)
Query: 109 TIGPHGPV------PLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFEDRETIIKTIG 162
T P PV L+ + + R H G G G
Sbjct: 29 TPPPDSPVFGGLKLKLKKEKFKTLFTLGTTLKGFRRATHTVGTGGIGEIT---------- 78
Query: 163 PHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGA 198
+ D + + F +G P R+ HA
Sbjct: 79 -----IVNDPKFPEHEFFTAGRTFPARLRHANLKYP 109
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase;
beta barrel, switch domain, heterodimer, pyrophosphate,
G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV}
SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Length = 434
Score = 233 bits (597), Expect = 2e-68
Identities = 82/319 (25%), Positives = 150/319 (47%), Gaps = 23/319 (7%)
Query: 213 KIEFACLVMRIVPLEGIASALNRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGA 272
++ A L ++G+ + +GIT+DV F T + + D PGH+ + NM TGA
Sbjct: 72 DVDLALL------VDGLQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGA 125
Query: 273 TQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQ 332
+ D+A+++VDA G QTR H+ + LG+ + V INK+D + + F+
Sbjct: 126 STCDLAIILVDARYGVQT-------QTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFE 178
Query: 333 EIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNFKT 392
I F + F+ + + +VP S L G+N+ S + WY+G L+++++ +
Sbjct: 179 SIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKS---ERSPWYAGQSLMEILETVEI 235
Query: 393 PSRPLTKPLRMSVSDIYKSTGS--GYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYVD 450
S LR V + + + G+ AG + +G++ G++++V P + + VK++
Sbjct: 236 ASDRNYTDLRFPVQYVNRPNLNFRGF--AGTLASGIVHKGDEIVVLPSGKSSRVKSIVTF 293
Query: 451 EMSVSAAYAGDNVSVTLLNYDQQNVSVGFLLSELSHPCPVSSKFEARIVVFNITTPITIG 510
E + A G V++T+ D+ ++S G LL + VS F+A +V P+ G
Sbjct: 294 EGELEQAGPGQAVTLTM--EDEIDISRGDLLVHADNVPQVSDAFDAMLVWMA-EEPMLPG 350
Query: 511 YPVTHDITHLTKAAIFSEI 529
+ I
Sbjct: 351 KKYDIKRATSYVPGSIASI 369
Score = 55.7 bits (135), Expect = 4e-08
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
Query: 13 IEEYTREQAGGKGRLHLVVIGHVDAGKSTLMGHLLYLMGRVSAREIHKHETESKKLGKQ- 71
I Y + K L + G+VD GKSTL+G LL+ + + +SKK G
Sbjct: 12 ILAYLGQHER-KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTG 70
Query: 72 -SFMYAWILDETGEESSCEIPVDTTS 96
A ++D E I +D
Sbjct: 71 DDVDLALLVDGLQAEREQGITIDVAY 96
>1wb1_A Translation elongation factor SELB; selenocysteine, protein
synthesis, selenium, ribosome; HET: GDP DXC; 3.0A
{Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Length = 482
Score = 163 bits (414), Expect = 3e-43
Identities = 69/269 (25%), Positives = 115/269 (42%), Gaps = 29/269 (10%)
Query: 235 RGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFE 294
RGIT+D+G S F+ + ITL+DAPGH D I +++ A D+AL+VVDA G
Sbjct: 57 RGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKT---- 112
Query: 295 SGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEY 354
QT EH L++ + + VVI K D + + + Q+ +
Sbjct: 113 ---QTGEHMLILDHFNIPII-VVITKSDNAG---TEEIKRTEMIMKSILQSTHNLKNSSI 165
Query: 355 VPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNF---KTPSRPLTKPLRMSVSDIYKS 411
+P S TG + L ++I R +M + +
Sbjct: 166 IPISAKTGFGVDE---------------LKNLIITTLNNAEIIRNTESYFKMPLDHAFPI 210
Query: 412 TGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYVDEMSVSAAYAGDNVSVTLLNYD 471
G+G + G + G++ G+++ V P N T V+++ + SV A AGD V + + D
Sbjct: 211 KGAGTVVTGTINKGIVKVGDELKVLPINMSTKVRSIQYFKESVMEAKAGDRVGMAIQGVD 270
Query: 472 QQNVSVGFLLSELSHPCPVSSKFEARIVV 500
+ + G +L+ K A+I +
Sbjct: 271 AKQIYRGXILTSKDTKLQTVDKIVAKIKI 299
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine,
structural genomics, NPPSFA; HET: CIT; 1.70A
{Methanosarcina mazei}
Length = 370
Score = 150 bits (381), Expect = 8e-40
Identities = 44/299 (14%), Positives = 106/299 (35%), Gaps = 35/299 (11%)
Query: 235 RGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFE 294
+G + D+ + + + + +DA + + ++IT +D+A+L +
Sbjct: 44 KGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIPPQ--------- 94
Query: 295 SGG---QTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSD 351
G T E + + LG + + + D+ E+ KL +D +
Sbjct: 95 --GLDAHTGECIIALDLLGFKHGIIALTRSDST--HMHAIDELKAKLKVITSGTVLQDWE 150
Query: 352 IEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNF-KTPSRPLTK-PLRMSVSDIY 409
+ + V L + ++ + + + L P R+ + +
Sbjct: 151 C--ISLNTNKSAK-NPFEGVDELKA------RINEVAEKIEAENAELNSLPARIFIDHAF 201
Query: 410 KSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYVDEMSVSAAYAGDNVSVTLLN 469
TG G + G V+ G+ +K + P + ++++ ++ + +A AG V + L N
Sbjct: 202 NVTGKGCVVLGVVKQGISKDKDKTKIFPLDRDIEIRSIQSHDVDIDSAPAGTRVGMRLKN 261
Query: 470 YDQQNVSVGFLLSELSHPCPVSSKFEARIVVF------NITTPITIGY-PVTHDITHLT 521
+++ GF++S+ E + F + +G + +
Sbjct: 262 VQAKDIERGFIISDKEIVTT-DYTLECTVSKFTKKIEPASVLHLFVGLQSEPVRVEKIL 319
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A;
translation termination, peptide release, PTC, P
biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo
sapiens}
Length = 204
Score = 141 bits (357), Expect = 2e-38
Identities = 31/134 (23%), Positives = 65/134 (48%), Gaps = 2/134 (1%)
Query: 396 PLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYVDEMSVS 455
PL P+R+ + D YK G+ + G++E+G I G+++++ P V + D++
Sbjct: 2 PLGSPIRLPIVDKYKDMGT--VVLGKLESGSICKGQQLVMMPNKHNVEVLGILSDDVETD 59
Query: 456 AAYAGDNVSVTLLNYDQQNVSVGFLLSELSHPCPVSSKFEARIVVFNITTPITIGYPVTH 515
G+N+ + L +++ + GF+L + ++ C F+A+IV+ + I GY
Sbjct: 60 TVAPGENLKIRLKGIEEEEILPGFILCDPNNLCHSGRTFDAQIVIIEHKSIICPGYNAVL 119
Query: 516 DITHLTKAAIFSEI 529
I + + +
Sbjct: 120 HIHTCIEEVEITAL 133
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding
protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Length = 397
Score = 130 bits (329), Expect = 1e-32
Identities = 77/294 (26%), Positives = 129/294 (43%), Gaps = 40/294 (13%)
Query: 235 RGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFE 294
RGIT++ ++ T ++ D PGH D++ NMITG D +LVV A G
Sbjct: 50 RGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMP---- 105
Query: 295 SGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIV-TKLGAFLKQAGFRDSDIE 353
QTREH LL R +GV + V +NK D V E+V ++ L + G++ +
Sbjct: 106 ---QTREHLLLARQIGVEHVVVYVNKADAV--QDSEMVELVELEIRELLTEFGYKGEETP 160
Query: 354 YVPCSGLTG-ENLTTPSQVPALTSWYSGPCLLDVIDNF-KTPSRPLTKPLRMSVSDIYKS 411
+ S L E + ++ LLD +D + P+R L KP + V +Y
Sbjct: 161 IIVGSALCALEQRDPELGLKSVQK------LLDAVDTYIPVPTRDLEKPFLLPVESVYSI 214
Query: 412 TGSGYCIAGRVETGVILAGEKVMVQPQNEV--TTVKAVYVDEM---SVSAAYAGDNVSVT 466
G G + G +E G++ G++ ++ T V + EM S+ A AGDN+
Sbjct: 215 PGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGI---EMFHKSLDRAEAGDNLGAL 271
Query: 467 LLNYDQQNVSVGFLLSELSHPCPVS----SKFEARIVVFNI-----TTPITIGY 511
+ ++++ G ++++ P S K EA++ + P +
Sbjct: 272 VRGLKREDLRRGLVMAK-----PGSIQPHQKVEAQVYILTKEEGGRHKPFVSHF 320
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation
factor, protein synthesis, antibiotic, GTP-binding,
nucleotide-binding; HET: GNP PUL; 1.4A {Thermus
thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB:
2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z*
2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A*
2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Length = 405
Score = 129 bits (328), Expect = 2e-32
Identities = 92/281 (32%), Positives = 133/281 (47%), Gaps = 32/281 (11%)
Query: 235 RGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFE 294
RGIT++ ++ET ++ + +D PGH D+I NMITGA Q D A+LVV A G
Sbjct: 59 RGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP---- 114
Query: 295 SGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVT-KLGAFLKQAGFRDSDIE 353
QTREH LL R +GV + V +NK+D V ++V ++ L Q F ++
Sbjct: 115 ---QTREHILLARQVGVPYIVVFMNKVDMV--DDPELLDLVEMEVRDLLNQYEFPGDEVP 169
Query: 354 YVPCSGLTGENLTTPSQVPALTSWYSGPC---LLDVIDNF-KTPSRPLTKPLRMSVSDIY 409
+ S L + LLD ID + TP R + KP M V D++
Sbjct: 170 VIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVF 229
Query: 410 KSTGSGYCIAGRVETGVILAGEKVMV---QPQNEVTTVKAVYVDEM---SVSAAYAGDNV 463
TG G GR+E G + G++V + P+ T V V EM ++ AGDNV
Sbjct: 230 TITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGV---EMHRKTLQEGIAGDNV 286
Query: 464 SVTLLNYDQQNVSVGFLLSELSHPCPVS----SKFEARIVV 500
V L ++ V G +L++ P S +KFEA + V
Sbjct: 287 GVLLRGVSREEVERGQVLAK-----PGSITPHTKFEASVYV 322
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA
polymerase, translation, transferase-RNA complex; HET:
GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A*
3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G*
1efu_B
Length = 1289
Score = 128 bits (324), Expect = 2e-30
Identities = 93/305 (30%), Positives = 141/305 (46%), Gaps = 45/305 (14%)
Query: 235 RGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFE 294
RGIT++ +++T T++ +D PGH D++ NMITGA Q D A+LVV AT G
Sbjct: 343 RGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP---- 398
Query: 295 SGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIV-TKLGAFLKQAGFRDSDIE 353
QTREH LL R +GV + V +NK D V + E+V ++ L Q F D
Sbjct: 399 ---QTREHILLGRQVGVPYIIVFLNKCDMV--DDEELLELVEMEVRELLSQYDFPGDDTP 453
Query: 354 YVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNF-KTPSRPLTKPLRMSVSDIYKST 412
V S L + L +D++ P R + KP + + D++ +
Sbjct: 454 IVRGSALKALE-GDAEWEAKILE------LAGFLDSYIPEPERAIDKPFLLPIEDVFSIS 506
Query: 413 GSGYCIAGRVETGVILAGEKVMVQPQNEV--TTVKAVYVDEM---SVSAAYAGDNVSVTL 467
G G + GRVE G+I GE+V + E +T V EM + AG+NV V L
Sbjct: 507 GRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGV---EMFRKLLDEGRAGENVGVLL 563
Query: 468 LNYDQQNVSVGFLLSELSHPCPVS----SKFEARIVVFNI-----TTPITIGY-PV---- 513
++ + G +L++ P + +KFE+ + + + TP GY P
Sbjct: 564 RGIKREEIERGQVLAK-----PGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFR 618
Query: 514 THDIT 518
T D+T
Sbjct: 619 TTDVT 623
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger,
initiate translation, tRNA binding, mRNA bindin binding;
HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB:
3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A*
3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Length = 403
Score = 120 bits (302), Expect = 3e-29
Identities = 63/292 (21%), Positives = 113/292 (38%), Gaps = 50/292 (17%)
Query: 235 RGITMDVGQSQFETKTK-YITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGF 293
+ S E K I+ +DAPGH+ + M++GA D A+LVV A +
Sbjct: 58 TEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQP-- 115
Query: 294 ESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIE 353
QTREH + + +GV L +V NK+D V S++ ++ F K G ++
Sbjct: 116 ----QTREHFVALGIIGVKNLIIVQNKVDVV--SKEEALSQYRQIKQFTK--GTWAENVP 167
Query: 354 YVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNF-KTPSRPLTKPLRMSVSDIYKST 412
+P S L N+ + L++ I+ + KTP R L++ M V +
Sbjct: 168 IIPVSALHKINIDS---------------LIEGIEEYIKTPYRDLSQKPVMLVIRSFDVN 212
Query: 413 GSGYCIA--------GRVETGVILAGEKVMVQPQNEV------------TTVKAVYVDEM 452
G G + G+ +++ V P V T + ++ +
Sbjct: 213 KPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRFGDE 272
Query: 453 SVSAAYAGDNVSV-TLLN--YDQQNVSVGFLLSELSHPCPVSSKFEARIVVF 501
A G V++ T L+ + + +G +++ PV + +
Sbjct: 273 EFKEAKPGGLVAIGTYLDPSLTKADNLLGSIITLADAEVPVLWNIRIKYNLL 324
Score = 30.3 bits (69), Expect = 3.1
Identities = 9/12 (75%), Positives = 11/12 (91%)
Query: 31 VIGHVDAGKSTL 42
V+GHVD GK+TL
Sbjct: 13 VVGHVDHGKTTL 24
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase,
EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP:
b.43.3.1 b.44.1.1 c.37.1.8
Length = 408
Score = 118 bits (298), Expect = 1e-28
Identities = 70/359 (19%), Positives = 128/359 (35%), Gaps = 85/359 (23%)
Query: 257 DAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGV 316
D+PGH+ + M++GA+ D A+LV+ A + QT+EH + + LG++++ +
Sbjct: 87 DSPGHETLMATMLSGASLMDGAILVIAANEPCPQP------QTKEHLMALEILGIDKIII 140
Query: 317 VINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTS 376
V NK+D V + + +E ++ F+K G + +P S N+
Sbjct: 141 VQNKIDLV--DEKQAEENYEQIKEFVK--GTIAENAPIIPISAHHEANIDV--------- 187
Query: 377 WYSGPCLLDVIDNF-KTPSRPLTKPLRMSVSDIYKSTGSGYCIA--------GRVETGVI 427
LL I +F TP R RM V+ + G I G + GV
Sbjct: 188 ------LLKAIQDFIPTPKRDPDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVF 241
Query: 428 LAGEKVMVQP------------QNEVTTVKAVYVDEMSVSAAYAGDNVSV-TLLN--YDQ 472
G+++ ++P + T + ++ + A+ G + V T L+ +
Sbjct: 242 KVGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAAGNTILRKAHPGGLIGVGTTLDPYLTK 301
Query: 473 QNVSVGFLLSELSHPCPVSSKFEARIVVFN---------ITTPITIGYP---------VT 514
+ G ++ P+ K R + + P+ G
Sbjct: 302 SDALTGSVVGLPGTLPPIREKITIRANLLDRVVGTKEELKIEPLRTGEVLMLNIGTATTA 361
Query: 515 HDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWDLVG 573
IT +I + P+ A G+R A+ W L+G
Sbjct: 362 GVITSARGDIA--DIKLKLPICAEI----GDR-----------VAI-SRRVGSRWRLIG 402
Score = 29.9 bits (68), Expect = 3.7
Identities = 7/12 (58%), Positives = 11/12 (91%)
Query: 31 VIGHVDAGKSTL 42
++GHVD GK++L
Sbjct: 13 MVGHVDHGKTSL 24
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus
abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A*
1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Length = 410
Score = 115 bits (290), Expect = 1e-27
Identities = 59/290 (20%), Positives = 109/290 (37%), Gaps = 58/290 (20%)
Query: 257 DAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGV 316
DAPGH+ + M+ GA+ D A+LV+ A QTREH + ++ +G + +
Sbjct: 89 DAPGHEALMTTMLAGASLMDGAILVIAANEPCPRP------QTREHLMALQIIGQKNIII 142
Query: 317 VINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTS 376
NK++ V +++ E ++ F++ G + +P S L G N+
Sbjct: 143 AQNKIELV--DKEKALENYRQIKEFIE--GTVAENAPIIPISALHGANIDV--------- 189
Query: 377 WYSGPCLLDVIDNF-KTPSRPLTKPLRMSVSDIYKSTGSGYCIA--------GRVETGVI 427
L+ I++F TP R KP +M V + G G + G +
Sbjct: 190 ------LVKAIEDFIPTPKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKL 243
Query: 428 LAGEKVMVQP------------QNEVTTVKAVYVDEMSVSAAYAGDNVSV-TLLN--YDQ 472
G+++ ++P + T + ++ V AY G V V T L+ +
Sbjct: 244 KVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAGGQFVEEAYPGGLVGVGTKLDPYLTK 303
Query: 473 QNVSVGFLLSELSHPCPVSSKFEARIVVFN---------ITTPITIGYPV 513
++ G ++ + PV + + PI +
Sbjct: 304 GDLMAGNVVGKPGKLPPVWDSLRLEVHLLERVVGTEQELKVEPIKRKEVL 353
Score = 29.9 bits (68), Expect = 4.2
Identities = 8/12 (66%), Positives = 11/12 (91%)
Query: 31 VIGHVDAGKSTL 42
++GHVD GK+TL
Sbjct: 15 MVGHVDHGKTTL 26
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function,
protein structure INI secsg, conserved hypothetical
protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP:
b.43.3.1
Length = 116
Score = 65.1 bits (159), Expect = 7e-13
Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 6/87 (6%)
Query: 377 WYSGPCLLDVIDNFKTPSRPLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQ 436
+ + + +P ++ V ++ G I G VE+G+I G KV
Sbjct: 14 FLKRKEVKEEEKIEILSKKPAG---KVVVEEVVNIMGKD-VIIGTVESGMIGVGFKVKGP 69
Query: 437 PQNEVTTVKAVYVDEMSVSAAYAGDNV 463
+ + + + V A AGD +
Sbjct: 70 SG--IGGIVRIERNREKVEFAIAGDRI 94
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 70.8 bits (173), Expect = 2e-12
Identities = 124/687 (18%), Positives = 196/687 (28%), Gaps = 247/687 (35%)
Query: 85 ESSCEIPVDTTSAGN----------PVDSETIIKTIGPHGPVPLEDTY--YLDKLFHFAG 132
E +P + + P +E P P L + Y+ L +
Sbjct: 17 EHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSK 76
Query: 133 ERNPERVVHAKGGGAFGYFEDR-------ETIIKTIGPHGPVPLED------TYYLDKLF 179
++V++ FE+ + + L Y
Sbjct: 77 VGQFDQVLNL----CLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYI--TAR 130
Query: 180 HFSGERNPER-----VVHAKGGGA-----FG-------YF-EVRKL---PAGVVK--IEF 216
+ ++ G A FG YF E+R L +V I+F
Sbjct: 131 IMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKF 190
Query: 217 A--CLVMRIVPLEGIASALNRGITMDVGQSQFETKTKYITLLDAPGHK---DF---IP-- 266
+ L I +G+ ++ + L+ P + D+ IP
Sbjct: 191 SAETLSELIRTTLDAEKVFTQGL--NILE-----------WLENPSNTPDKDYLLSIPIS 237
Query: 267 -NMITGATQA---DVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLD 322
+I G Q V ++ T GE + G L+ V I + D
Sbjct: 238 CPLI-GVIQLAHYVVTAKLLGFTPGELRSYL-KGATGHSQGLVT--------AVAIAETD 287
Query: 323 TVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPC 382
SW + F V K L G R E P + L PS +
Sbjct: 288 --SW--ESFFVSVRKAITVLFFIGVRCY--EAYPNTSLP------PSILE---------- 325
Query: 383 LLDVIDN-FKTPSRPLTKPLRM-SVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNE 440
D ++N PS P M S+S++ Q +
Sbjct: 326 --DSLENNEGVPS-----P--MLSISNL----------------------------TQEQ 348
Query: 441 VTTVKAVYVDEMSVSAAYAGDNVSVTLLNYDQQNVSVGF------LLSEL-SHPCPVS-- 491
V YV++ + AG V ++L+N + V G L L P
Sbjct: 349 VQD----YVNKTNSHLP-AGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLD 403
Query: 492 -SK--FEARIVVFN-----ITTPITIGYPVTHDITHLTKAAIFSEIGKQTPVAARFSTVW 543
S+ F R + F+ + +P + H +HL A I K + + +
Sbjct: 404 QSRIPFSERKLKFSNRFLPVASP----F---H--SHLLVPAS-DLINKD---LVKNNVSF 450
Query: 544 GERGSADTNRDPRGFALK---FYTEDGNWDLVGNNTPIFFVRDPFRFIHFIHSQKRNPVT 600
++ + T DG+ DL + I I R PV
Sbjct: 451 ------------NAKDIQIPVYDTFDGS-DLRVLSGSI--SERIVDCI------IRLPV- 488
Query: 601 HLRDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKF 660
W+ + + TH IL D G P G G G T + NKD
Sbjct: 489 ---KWET-----TTQFKATH---IL--DFG-PGG---ASGLGVLTHR--NKDG------- 522
Query: 661 HFRTDQGIKNISPQTATKL-AATDPDY 686
G++ I A L D DY
Sbjct: 523 -----TGVRVIV---AGTLDINPDDDY 541
Score = 42.7 bits (100), Expect = 6e-04
Identities = 56/306 (18%), Positives = 95/306 (31%), Gaps = 120/306 (39%)
Query: 530 GK---QTPVAARFSTVWGERGSADTN-RDPRGFALKFYTEDGNWDLVGNNTPIFFVRDPF 585
G +T AA+ VW R AD + +D GF++ D+V NN P+
Sbjct: 1632 GMDLYKTSKAAQ--DVW-NR--ADNHFKDTYGFSIL--------DIVINN-PVNLT---- 1673
Query: 586 RFIHFIHSQKRNPVTHLRDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHT 645
IHF + + +R+ ++ +++ ET DG
Sbjct: 1674 --IHFGGEKGK----RIRE-----NYSAMIFETI------------VDG--------KLK 1702
Query: 646 FKLVNKDNEPVYCKFHFRTDQGIKNISPQT-----ATKLAATDPDYSI-RDLYDNIAKGN 699
+ + K+ + FR+++G+ + T A L + + DL +KG
Sbjct: 1703 TEKIFKEINEHSTSYTFRSEKGLLS---ATQFTQPA--LTLME--KAAFEDL---KSKGL 1752
Query: 700 FPSWTFYI--------------QVMTFEEAKTYRWNPFDVTKI---WPQSDFPLLPVGHM 742
P+ + VM+ E +V Q P +G
Sbjct: 1753 IPADATFAGHSLGEYAALASLADVMSIESL-------VEVVFYRGMTMQVAVPRDELGR- 1804
Query: 743 VLDKNPGNYYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLG-----ANFN 797
NY +A NP + Q L ++ R G N+N
Sbjct: 1805 ------SNYGM----IAINPGRVAASFS-------QEALQYVVERVGKRTGWLVEIVNYN 1847
Query: 798 ----QI 799
Q
Sbjct: 1848 VENQQY 1853
Score = 39.6 bits (92), Expect = 0.006
Identities = 69/412 (16%), Positives = 111/412 (26%), Gaps = 182/412 (44%)
Query: 7 KDK-LKKIEEYTREQAGG---KGRLHLVV--IGHV----DAGKSTLMGHLL--------- 47
+++ K + E T A LV +G+V + K +L
Sbjct: 34 QEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFEN 93
Query: 48 -YLMGRVSAREIHKHETESKKLGKQSFMYAWILDETGEESSCEIPVDTTSAGNPVDSETI 106
YL G +IH + + DTT V ++ +
Sbjct: 94 CYLEGN----DIH------------ALA-----------AKLLQENDTT----LVKTKEL 122
Query: 107 IKTIGPHGPVPLEDTYYLDKLFHFAGERNPER-----VVHAKGGGA-----FG------- 149
IK Y A ++ G A FG
Sbjct: 123 IKN------------YI--TARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDD 168
Query: 150 YFED-RE----------TIIKTIG-----------------PHG---------PVPLEDT 172
YFE+ R+ +IK G P D
Sbjct: 169 YFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDK 228
Query: 173 YYLD------------KLFHFSGERNPERVVHAKGGGAFGYFEVRKLPAGVVKIEFACLV 220
YL +L H+ VV AK G F E+R G
Sbjct: 229 DYLLSIPISCPLIGVIQLAHY--------VVTAKLLG-FTPGELRSYLKGAT-------- 271
Query: 221 MRIVPLEGIASALNRGITM-DVGQSQFETKTKYITLL--------DAPGHKDFIPNMITG 271
+G+ +A+ I D +S F + K IT+L +A + P+++
Sbjct: 272 ---GHSQGLVTAV--AIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILED 326
Query: 272 ATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDT 323
+ + E G S L + +L Q+ +NK ++
Sbjct: 327 SLE-----------NNE---GVPS------PMLSISNLTQEQVQDYVNKTNS 358
Score = 39.3 bits (91), Expect = 0.007
Identities = 63/435 (14%), Positives = 113/435 (25%), Gaps = 192/435 (44%)
Query: 586 RFIHFIHSQKRNPVTHLRDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRH--MHGYGS 643
+F+ + V+ L + F +L + ++ F + + G
Sbjct: 63 KFLGY--------VSSLVEPSKVGQFDQVL-------NLCLTE------FENCYLEGNDI 101
Query: 644 HTF--KLVNKDNEPVYCKFHFRTDQGIKN-----------ISPQTATKL--AATDPD--- 685
H KL+ +++ + IKN ++ + L A + +
Sbjct: 102 HALAAKLLQENDTTLVKTKEL-----IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL 156
Query: 686 YSI--------------RDLYDNIAKGNFPSW-TFYIQVM---------TFEEAKTYRWN 721
+I RDLY + I+ T +A+
Sbjct: 157 VAIFGGQGNTDDYFEELRDLYQT-----YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ 211
Query: 722 PFDVTKIW-------PQSD--------FPLLPVGHMVLDKNPGNYYAEIEQLAFNPNNLI 766
++ + W P D PL+ V + +Y + L F P L
Sbjct: 212 GLNILE-WLENPSNTPDKDYLLSIPISCPLIGVIQLA------HYVVTAKLLGFTPGELR 264
Query: 767 PGIEPTPDKMLQGRLHSYIDTHIHRL-----------GANFNQIPVNCPYRVRVANY--- 812
L+G H L +F + V +
Sbjct: 265 S--------YLKGAT-----GHSQGLVTAVAIAETDSWESFFVSVRKA---ITVLFFIGV 308
Query: 813 --QRDAPM----------AIDNQNGAP---------------------N-YYP------- 831
P +++N G P N + P
Sbjct: 309 RCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI 368
Query: 832 ---NSFK-----GPEPTPRGAWSTYNATGDVKRYKTEDEDNFSQPRILWSNVLDDAARDR 883
N K GP P+ S Y +++ K + Q RI +S +R
Sbjct: 369 SLVNGAKNLVVSGP---PQ---SLYGLNLTLRKAKAPSGLD--QSRIPFS--------ER 412
Query: 884 MTTNIASVLKLAAPF 898
L +A+PF
Sbjct: 413 KLKFSNRFLPVASPF 427
Score = 29.6 bits (66), Expect = 5.6
Identities = 31/211 (14%), Positives = 51/211 (24%), Gaps = 101/211 (47%)
Query: 689 RDLYDN--IAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDK 746
DLY A+ V + A + + + F +L +V++
Sbjct: 1633 MDLYKTSKAAQ----------DV--WNRADNHFKDTYG---------FSIL---DIVIN- 1667
Query: 747 NPGNYYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGANFNQIPVNCPYR 806
NP NL IH G +I N Y
Sbjct: 1668 --------------NPVNLT----------------------IHFGGEKGKRIREN--YS 1689
Query: 807 VRVANYQRDAPMAIDNQNGAPNYYPNS--FKGPEPTPRGAWSTYNATGDVKRYKTEDEDN 864
+ D + + N + S F+ + G + T+
Sbjct: 1690 AMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEK-------------GLLSA--TQ---- 1730
Query: 865 FSQPRILWSNVLDDAARDRMTTNIA--SVLK 893
F+QP + A LK
Sbjct: 1731 FTQPAL-------------TLMEKAAFEDLK 1748
Score = 29.6 bits (66), Expect = 5.7
Identities = 12/53 (22%), Positives = 16/53 (30%), Gaps = 17/53 (32%)
Query: 199 FGYFEVRKLPAGVVKIEFACLVMRIVPLEG------IASALNRGITMDVGQSQ 245
FG P G + L R +G +A L+ D G Q
Sbjct: 504 FG-------PGGASGL--GVLTHRNK--DGTGVRVIVAGTLDINPDDDYGFKQ 545
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus
stearothermophilus} PDB: 2lkd_A*
Length = 178
Score = 59.2 bits (144), Expect = 3e-10
Identities = 41/133 (30%), Positives = 56/133 (42%), Gaps = 17/133 (12%)
Query: 236 GITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFES 295
GIT +G Q K IT LD PGH+ F GA D+ +LVV A G
Sbjct: 40 GITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMP----- 94
Query: 296 GGQTRE---HALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDI 352
QT E HA ++ V + V INK+D + DR + + + ++ G D
Sbjct: 95 --QTVEAINHA---KAANV-PIIVAINKMDKPEANPDRVMQELMEYNLVPEEWG---GDT 145
Query: 353 EYVPCSGLTGENL 365
+ S T E L
Sbjct: 146 IFCKLSAKTKEGL 158
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 59.1 bits (142), Expect = 6e-09
Identities = 107/753 (14%), Positives = 199/753 (26%), Gaps = 248/753 (32%)
Query: 48 YLMGRVSAREIHKHETESKKLGKQSFMYAWILDETGEESSCEIPVDTTSAGN------PV 101
+S EI H SK + W L EE + V+ N P+
Sbjct: 41 MPKSILSKEEI-DHIIMSKDAVSGTLRLFWTLLSKQEE-MVQKFVEEVLRINYKFLMSPI 98
Query: 102 DSETIIKTIGPHGPVPLEDTY--YLDKLFHFAGERNPERVVHAKGGGAFGYFEDRETIIK 159
+E P + Y D+L+ + + AK Y R
Sbjct: 99 KTEQR-------QPSMMTRMYIEQRDRLY-----NDNQVF--AK------YNVSRLQPYL 138
Query: 160 TIGPHGPVPLEDTYYLDKLFHFSGERNPER--VVHAKGGGAFGYFEVRKLPAGVVKIEFA 217
+ L +L P + ++ G G K
Sbjct: 139 KLRQA----------LLEL-------RPAKNVLIDGVLG--SG-----K----------T 164
Query: 218 CLVMRIVPLEGIASALNRGIT-MDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQAD 276
+ + + + ++ I +++ + + +L ++ PN + + +
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCN--SPETVLEMLQKLLYQ-IDPNWTSRSDHSS 221
Query: 277 VALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVT 336
L + + + E +S + E+ LLV L V + +
Sbjct: 222 NIKLRIHSIQAELRRLLKS--KPYENCLLV--------------LLNV-QNAKAWN---- 260
Query: 337 KLGAFLKQAGFRDSDIEYVPCSGLTGENLTT--PSQVPALTS-WYSGPCLLDVIDNFKTP 393
AF ++ C L LTT L++ + L TP
Sbjct: 261 ---AF---------NLS---CKIL----LTTRFKQVTDFLSAATTTHISLDHHSMTL-TP 300
Query: 394 SRPLT---KPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYVD 450
+ K L D L E + P+ ++ + D
Sbjct: 301 DEVKSLLLKYLDCRPQD--------------------LPREVLTTNPR-RLSIIAESIRD 339
Query: 451 EMSVSAAYAGDNVSVTLLNYDQQNVSVGFLLSELSHPCPVSSKFEARIVVFNITTPITIG 510
++ + +N D+ + L+ L P F+ + VF + I
Sbjct: 340 GLATWDNWK-------HVNCDKLTTIIESSLNVLE-PAEYRKMFDR-LSVFPPSAHIP-- 388
Query: 511 YPVTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWD 570
S +W + D K + +
Sbjct: 389 -------------------------TILLSLIWFD----VIKSDVMVVVNKLH----KYS 415
Query: 571 LVGNNTPIFFVRDPFRFIHFIHSQKRNPVTHLRDWDAFWDFISLLPETTHQVMI------ 624
LV + P I S L + A H+ ++
Sbjct: 416 LV--------EKQPKESTISIPSIYLELKVKLENEYAL-----------HRSIVDHYNIP 456
Query: 625 --LFSDRGIP---DGFRHMH-GYGSHTFKLVNKDN----EPVYCKFHFRTDQGIKNISPQ 674
SD IP D + + H G+ H + + + V+ F F +Q I++
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGH--HLKNIEHPERMTLFRMVFLDFRF-LEQKIRH---- 509
Query: 675 TATKLAATDPDYSIRDLYDNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDF 734
A + L FY + + K R V I DF
Sbjct: 510 --DSTAWNASGSILNTLQQ---------LKFYKPYICDNDPKYERL----VNAI---LDF 551
Query: 735 PLLPVGHMVLDKNPGNYYAEIEQLAF-NPNNLI 766
+++ K Y ++ ++A + I
Sbjct: 552 LPKIEENLICSK-----YTDLLRIALMAEDEAI 579
Score = 54.9 bits (131), Expect = 1e-07
Identities = 82/612 (13%), Positives = 168/612 (27%), Gaps = 173/612 (28%)
Query: 384 LDVIDNFKTPSRPLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTT 443
D D P L+K + I S +G + ++ + + V
Sbjct: 33 FDCKDVQDMPKSILSKE---EIDHIIMS--------KDAVSGTLRLFWTLLSKQEEMV-- 79
Query: 444 VKAVYVDEMSVSAAYAGDNVSVTLLNYDQQNVSVGFLLSELSH----PCPVSSKF-EARI 498
+V+E V +NY FL+S + P ++ + E R
Sbjct: 80 --QKFVEE-------------VLRINYK-------FLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 499 VVFNITTPITIGYPVT--HDITHLTKAA--------IFSE----IGKQTPVA--ARFSTV 542
++N + Y V+ L +A + + GK V
Sbjct: 118 RLYN-DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176
Query: 543 ---------WGERGSADTNRDPRGFALKFYTE-DGNWDLVGNNT-----PIFFVRDPFRF 587
W + ++ K + D NW +++ I ++ R
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 588 IHFIHSQKRNPVTHLRD------WDAFWDFISLLPETTHQVMILFSDRGIPD---GFRHM 638
+ N + L + W+AF + ++++ + + D
Sbjct: 237 L-LKSKPYENCLLVLLNVQNAKAWNAF-NLSC-------KILLTTRFKQVTDFLSAATTT 287
Query: 639 HGYGSHTFKLVNKDN-EPVYCKF-HFRTDQ---GIKNISPQTATKLAATDPDYSIRDLYD 693
H H + D + + K+ R + +P+ + +A + D +D
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT--WD 345
Query: 694 NIAKGNFPSWTFYIQ----VMTFEEAKTYRWN----PFDVTKI--------WPQSDF--P 735
N N T I+ V+ E + P I W
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA-HIPTILLSLIWFDVIKSDV 404
Query: 736 LLPVGHMV----LDKNPGNYYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHR 791
++ V + ++K P I P L+ ++ + +HR
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISI-----------------PSIYLELKVKLENEYALHR 447
Query: 792 LGANFNQIPVNCPYRVRVANYQRD-APMAIDN--------------QNGAPNYYPNSF-- 834
I V+ Y + D P +D + F
Sbjct: 448 ------SI-VDH-YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD 499
Query: 835 --------KGPEPTPRGAWSTYNATGDVKRYK---TEDEDNFSQPRILWSNVLDDAARDR 883
+ + S N +K YK +++ + + + L +
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL 559
Query: 884 MTTNIASVLKLA 895
+ + +L++A
Sbjct: 560 ICSKYTDLLRIA 571
Score = 39.8 bits (92), Expect = 0.004
Identities = 49/313 (15%), Positives = 80/313 (25%), Gaps = 106/313 (33%)
Query: 4 KVNKDKLKKIEEYTREQAGGKGRLHLVVIGHVDAGKSTLMGHLLYLMGRVSAREIHKHET 63
VN DKL I E + ++ +
Sbjct: 349 HVNCDKLTTIIESS-----------------LNVLEPAEY-------------------- 371
Query: 64 ESKKLGKQSFMYAWILDETGEESSCEIPVDTTS----AGNPVDSETIIKTIGPHGPV--- 116
++ F + S IP S D ++ + + V
Sbjct: 372 ------RKMFDRLSVFPP-----SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 117 PLEDTYYL-DKLFHFAGERNPERVVHAKGGGAFGYFEDRETIIKTIGPHGPVPL-EDTYY 174
P E T + + E +H D I KT +P D Y+
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRS-------IVDHYNIPKTFDSDDLIPPYLDQYF 473
Query: 175 LDKL-FHFSGERNPERVVHAKGGGAFG--YFEVRKLPAGVVKIEFACLVMRIVPLEGIAS 231
+ H +PER+ F + + R L KI S
Sbjct: 474 YSHIGHHLKNIEHPERM------TLFRMVFLDFRFLEQ---KIRHDST-----AWNASGS 519
Query: 232 ALNRGITMDVGQSQFETKTKYITLLDAPGH------KDFIP------------NMITGAT 273
LN T+ Q + YI D DF+P +++ A
Sbjct: 520 ILN---TL----QQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIAL 572
Query: 274 QADVALLVVDATR 286
A+ + +A +
Sbjct: 573 MAEDEAIFEEAHK 585
Score = 33.3 bits (75), Expect = 0.40
Identities = 75/578 (12%), Positives = 154/578 (26%), Gaps = 177/578 (30%)
Query: 7 KDKLKKIEEYTREQAGGKGRLHLVVIGHVDAGKSTLMGHLLYLMGRVSAREIHKHETESK 66
K+ + E K +++ G + +GK+ + A ++
Sbjct: 134 LQPYLKLRQALLELRPAKN---VLIDGVLGSGKTWV------------ALDVCLSYKVQC 178
Query: 67 KLGKQSFMYAWILDETGEESSCEIPVDTTSAGNPVDSETIIKTIGPHGPVPLEDTYY-LD 125
K+ + F W+ + N ET+++ L+ Y +D
Sbjct: 179 KMDFKIF---WL-----------------NLKNCNSPETVLE--------MLQKLLYQID 210
Query: 126 KLFHFAGE---RNPERVVHAKGGGAFGYFEDRETIIKTIGPHGPVPLEDTYYLDKLFHF- 181
+ + R+ + E R + + + L + F
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQA-------ELRRLLKSKPYENCLLVLLNVQNAKAWNAFN 263
Query: 182 -------------------SGERNPERVVHAKGGGAFGYFEVRKLPAGVVKIEFACL--- 219
+ + H EV+ L + L
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT--LTPDEVKSLLLKYLDCRPQDLPRE 321
Query: 220 VMRIVPLEGIASALNRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNM----ITGATQA 275
V+ P +++ + +S + D D ++ +T ++
Sbjct: 322 VLTTNPRR---------LSI-IAES----------IRDGLATWDNWKHVNCDKLTTIIES 361
Query: 276 DVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVI-NKLDTVSWSQDRFQE- 333
+ +L R F+ L V I L ++ W +
Sbjct: 362 SLNVLEPAEYRKMFD-----------------RLSVFPPSAHIPTILLSLIWFDVIKSDV 404
Query: 334 --IVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNFK 391
+V KL + + + E AL ++D++
Sbjct: 405 MVVVNKL--HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR--------SIVDHYN 454
Query: 392 TPSRPLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYVD- 450
P + L D Y + G+ + ++ +T + V++D
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGHHLKN--------------IEHPERMTLFRMVFLDF 500
Query: 451 ---EMSVSAAYAGDNVSVTLLNYDQQNVSVGFLLSEL----SHPCPVSSKFEARIV---- 499
E + N S ++LN L +L + C K+E +
Sbjct: 501 RFLEQKIRHDSTAWNASGSILN----------TLQQLKFYKPYICDNDPKYERLVNAILD 550
Query: 500 -VFNITTPITIGYPVTHDITHLT----KAAIFSEIGKQ 532
+ I + I T D+ + AIF E KQ
Sbjct: 551 FLPKIEENL-ICSKYT-DLLRIALMAEDEAIFEEAHKQ 586
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation
of protein synthesis, cryo-eletron microscopy,
translation/RNA complex; 13.80A {Escherichia coli}
Length = 501
Score = 48.7 bits (117), Expect = 6e-06
Identities = 40/138 (28%), Positives = 59/138 (42%), Gaps = 27/138 (19%)
Query: 236 GITMDVGQSQFETKTKYITLLDAPGHKDFIPNMIT-----GATQADVALLVVDATRGEFE 290
GIT +G ET+ IT LD PGH F T GA D+ +LVV A G
Sbjct: 36 GITQHIGAYHVETENGMITFLDTPGHAAF-----TSMRARGAQATDIVVLVVAADDGVMP 90
Query: 291 TGFESGGQTRE---HALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGF 347
QT E HA ++ V + V +NK+D DR + +++ G ++ G
Sbjct: 91 -------QTIEAIQHA---KAAQV-PVVVAVNKIDKPEADPDRVKNELSQYGILPEEWG- 138
Query: 348 RDSDIEYVPCSGLTGENL 365
+ ++V S G +
Sbjct: 139 --GESQFVHVSAKAGTGI 154
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 46.9 bits (112), Expect = 2e-05
Identities = 21/120 (17%), Positives = 41/120 (34%), Gaps = 28/120 (23%)
Query: 253 ITLLDAPG-HKDFIPN--MITGATQA----DVALLVVDATRGEFETGFESGGQTREHALL 305
+TL+D PG + A + D +LV D+ +E + L
Sbjct: 85 VTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTPYE---------DDVVNL 135
Query: 306 VRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENL 365
+ + + + VV+NK+D + E +L + + + S L +
Sbjct: 136 FKEMEIPFV-VVVNKIDVLG-------EKAEELKGLYESRYE----AKVLLVSALQKKGF 183
Score = 30.8 bits (70), Expect = 2.3
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 26 RLHLVVIGHVDAGKSTLMGHLL 47
R ++VV G + GKS+ M L+
Sbjct: 34 RRYIVVAGRRNVGKSSFMNALV 55
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET:
GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP:
b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Length = 594
Score = 46.5 bits (111), Expect = 3e-05
Identities = 38/174 (21%), Positives = 62/174 (35%), Gaps = 47/174 (27%)
Query: 224 VPLEGIASALNRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMIT-GATQADVALLVV 282
+P++ I + + + +D PGH+ F + G AD+A+L+V
Sbjct: 47 IPMDVI----EGICGDFLKKFSIRETLPGLFFIDTPGHEAFT-TLRKRGGALADLAILIV 101
Query: 283 DATRGEFETGFESGGQTREHAL-LVRSLGVNQLGVVINKLD------------------- 322
D GF+ QT+E AL ++R V NK+D
Sbjct: 102 DINE-----GFKP--QTQE-ALNILRMYRT-PFVVAANKIDRIHGWRVHEGRPFMETFSK 152
Query: 323 ----TVSWSQDRFQEIVTKLG-------AFLKQAGFRDSDIEYVPCSGLTGENL 365
+ E+V KL F + F S + +P S +TGE +
Sbjct: 153 QDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFA-SQVSIIPISAITGEGI 205
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA,
ribosomal; 10.80A {Bos taurus}
Length = 537
Score = 45.3 bits (108), Expect = 7e-05
Identities = 38/139 (27%), Positives = 57/139 (41%), Gaps = 28/139 (20%)
Query: 236 GITMDVGQSQFETKT-KYITLLDAPGHKDFIPNMIT-----GATQADVALLVVDATRGEF 289
GIT +G + + IT LD PGH F + G D+ +LVV A G
Sbjct: 36 GITQHIGAFLVSLPSGEKITFLDTPGHAAF-----SAMRARGTQVTDIVILVVAADDGVM 90
Query: 290 ETGFESGGQTRE---HALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAG 346
+ QT E HA + V + + INK D ++ ++ + + G
Sbjct: 91 K-------QTVESIQHA---KDAHV-PIVLAINKCDKAEADPEKVKKELLAYDVVCEDYG 139
Query: 347 FRDSDIEYVPCSGLTGENL 365
D++ V S LTGEN+
Sbjct: 140 ---GDVQAVHVSALTGENM 155
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET:
GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W*
3zvo_Y* 3uoq_W*
Length = 529
Score = 45.1 bits (107), Expect = 1e-04
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 235 RGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRG 287
RGI++ QF + LLD PGH+DF + T D L+V+DA +G
Sbjct: 66 RGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKG 118
Score = 32.0 bits (73), Expect = 1.1
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 6/39 (15%)
Query: 31 VIGHVDAGKSTLMGHLLY------LMGRVSAREIHKHET 63
+I H DAGK+T+ +L G V R ++H
Sbjct: 18 IISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAK 56
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis,
translation; HET: GDP; 2.11A {Coxiella burnetii}
Length = 528
Score = 45.1 bits (107), Expect = 1e-04
Identities = 23/53 (43%), Positives = 29/53 (54%)
Query: 235 RGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRG 287
RGI++ QF K I LLD PGH DF + T D AL+V+DA +G
Sbjct: 66 RGISVTTSVMQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKG 118
Score = 32.0 bits (73), Expect = 1.1
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
Query: 31 VIGHVDAGKSTLMGHLLY------LMGRVSAREIHKHET 63
+I H DAGK+TL LL L G + +R+ +H T
Sbjct: 18 IISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHAT 56
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 41.5 bits (98), Expect = 4e-04
Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 25/138 (18%)
Query: 247 ETKTKYITLLDAPG----------HKDFIPNMITGAT-----QADVALLVVDATRG-EFE 290
E + K ++D PG ++ I + I DVA+LVVD E
Sbjct: 40 EIEWKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEII 99
Query: 291 TGFESGGQT---REHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGF 347
+E G+ E +R L + + V +NKLD + Q+ + K
Sbjct: 100 KRWEKRGEIPIDVEFYQFLRELDIPTI-VAVNKLDKIKNVQEVINFLAEKFE-----VPL 153
Query: 348 RDSDIEYVPCSGLTGENL 365
+ D ++P S G+N+
Sbjct: 154 SEIDKVFIPISAKFGDNI 171
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation;
HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP:
b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB:
1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A*
1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T*
2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Length = 842
Score = 41.9 bits (98), Expect = 0.001
Identities = 37/148 (25%), Positives = 49/148 (33%), Gaps = 38/148 (25%)
Query: 235 RGITM--------------DVGQSQFETKTK--YITLLDAPGHKDFIPNMITGATQADVA 278
RGIT+ DV + + +T I L+D+PGH DF + D A
Sbjct: 66 RGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGA 125
Query: 279 LLVVDATRGEFETGFESGGQTR---EHALLVRSLGVNQLGVVINKLD--------TVSWS 327
L+VVD G QT AL R V VVINK+D +
Sbjct: 126 LVVVDTI-----EGVCV--QTETVLRQALGERIKPV----VVINKVDRALLELQVSKEDL 174
Query: 328 QDRFQEIVTKLGAFLKQAGFRDSDIEYV 355
F V + + V
Sbjct: 175 YQTFARTVESVNVIVSTYADEVLGDVQV 202
Score = 35.4 bits (81), Expect = 0.10
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 31 VIGHVDAGKSTLMGHLLYLMGRVSAR 56
VI HVD GKSTL L+ G +SA
Sbjct: 24 VIAHVDHGKSTLTDSLVQRAGIISAA 49
Score = 30.4 bits (68), Expect = 3.1
Identities = 24/123 (19%), Positives = 44/123 (35%), Gaps = 18/123 (14%)
Query: 363 ENLTTPSQVPA--LTSWYSGPCLLDVIDNFKTPSRPLTKPLRMSVSDIYKSTGSGYCIA- 419
+L +P A Y GP K L + VS + ++ G A
Sbjct: 340 LHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDP--KADLMLYVSKMVPTSDKGRFYAF 397
Query: 420 GRVETGVILAGEKVMVQPQN---------EVTTVKAVYV----DEMSVSAAYAGDNVSVT 466
GRV G + +G+KV +Q N + ++ V + + AG+ + +
Sbjct: 398 GRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLV 457
Query: 467 LLN 469
++
Sbjct: 458 GID 460
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 39.0 bits (91), Expect = 0.003
Identities = 19/135 (14%), Positives = 38/135 (28%), Gaps = 18/135 (13%)
Query: 237 ITMDVGQSQFETKTKY---ITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGF 293
+ D + L PG + + D + V D+
Sbjct: 57 LFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANA 116
Query: 294 ESGGQTREHALLVRSLGVNQLGVVI--NKLDTV-SWSQDRFQEIVTKLGAFLKQAGFRDS 350
ES RE+ L L ++ + +VI NK D + + + + +
Sbjct: 117 ESMRNMREN-LAEYGLTLDDVPIVIQVNKRDLPDALPVE---MVRAVVD--------PEG 164
Query: 351 DIEYVPCSGLTGENL 365
+ G+ +
Sbjct: 165 KFPVLEAVATEGKGV 179
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 36.7 bits (86), Expect = 0.026
Identities = 34/146 (23%), Positives = 46/146 (31%), Gaps = 47/146 (32%)
Query: 235 RGITMDVGQSQFETKTKYITLLDAPG-HKDFIPN------MITGATQA----DVALLVVD 283
RGI + G+ Q I +D PG HK P M +A + + VVD
Sbjct: 47 RGILTE-GRRQ-------IVFVDTPGLHK---PMDALGEFMDQEVYEALADVNAVVWVVD 95
Query: 284 ATRGEFETGFESGGQTREHALLVRSLGVNQLGV----VINKLDTVSWSQDRFQEIVTKLG 339
T E L+ R+L V V NKLD +E +
Sbjct: 96 LRHPP----------TPEDELVARALKPLVGKVPILLVGNKLDAA----KYPEEAMKAYH 141
Query: 340 AFLKQAGFRDSDIEYVPCSGLTGENL 365
L +A E S L +
Sbjct: 142 ELLPEA-------EPRMLSALDERQV 160
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 35.1 bits (82), Expect = 0.088
Identities = 28/144 (19%), Positives = 50/144 (34%), Gaps = 42/144 (29%)
Query: 235 RGITMDVGQSQFETKTKYITLLDAPG-HKDFIPN------MITGATQA----DVALLVVD 283
GI + G Q +D PG H + M A+ + ++ + VV+
Sbjct: 48 VGIHTE-GAYQ-------AIYVDTPGLHME--EKRAINRLMNKAASSSIGDVELVIFVVE 97
Query: 284 ATRGEFETGFESGGQTREHALLVRSLGVNQLGV--VINKLDTVSWSQDRFQEIVTKLGAF 341
TR T + +++ L + V +NK+D V + + L +
Sbjct: 98 GTRW-----------TPDDEMVLNKLREGKAPVILAVNKVDNVQ-EKADLLPHLQFLASQ 145
Query: 342 LKQAGFRDSDIEYVPCSGLTGENL 365
+ + VP S TG N+
Sbjct: 146 MNFL-------DIVPISAETGLNV 162
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 34.8 bits (81), Expect = 0.11
Identities = 34/143 (23%), Positives = 52/143 (36%), Gaps = 35/143 (24%)
Query: 235 RGITMDVGQSQFETKTKYITLLDAPG-----HKDFIPN-MITGATQA----DVALLVVDA 284
G+ ++Q I LD PG D + + M+ A Q+ DV L ++DA
Sbjct: 50 LGVKNIPNEAQ-------IIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDA 102
Query: 285 TRGEFETGFESGGQTREHALLVRSLGVNQLGV--VINKLDTVSWSQDRFQEIVTKLGAFL 342
T G R+ + + V VINK+D + +++ I
Sbjct: 103 TEGWRP---------RDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHP 153
Query: 343 KQAGFRDSDIEYVPCSGLTGENL 365
+ E VP S L G NL
Sbjct: 154 ELT-------EIVPISALKGANL 169
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem
G-domains, ligand binding protein; HET: GDP; 1.90A
{Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Length = 439
Score = 33.6 bits (78), Expect = 0.30
Identities = 24/98 (24%), Positives = 34/98 (34%), Gaps = 26/98 (26%)
Query: 275 ADVALLVVDATRGEFE-----TGF--ESGGQTREHALLVRSLGVNQLGVVINKLDTVSWS 327
ADV ++V+DAT+G G G R+ V VV NK D V
Sbjct: 264 ADVVVIVLDATQGITRQDQRMAGLMERRG----------RAS-V----VVFNKWDLVVHR 308
Query: 328 QDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENL 365
+ R+ E L + + S G N+
Sbjct: 309 EKRYDEFTKLFREKLYFIDY----SPLIFTSADKGWNI 342
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 33.3 bits (76), Expect = 0.37
Identities = 37/185 (20%), Positives = 65/185 (35%), Gaps = 39/185 (21%)
Query: 203 EVRKLPAGVVKIEFACLVMRIVPLEGIASALNRGIT---MDVGQSQFETKTKYI------ 253
++ LP VV +E +V+ P G ++ L +T ++ F T+ +
Sbjct: 156 VLKDLP--VVDLEIPTVVIAGHPNVGKSTLLKA-LTTAKPEIASYPFTTRGINVGQFEDG 212
Query: 254 ----TLLDAPGHKDF-IPNMITGATQA--------DVALLVVDATRGEFETGFESGGQTR 300
++D PG D I QA ++ + + D + GF Q
Sbjct: 213 YFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPS---EHCGFPLEEQIH 269
Query: 301 EHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGL 360
+ VVINK+D E + +L F+K+ G + + S L
Sbjct: 270 LFEEVHGEFKDLPFLVVINKIDVADE------ENIKRLEKFVKEKG-----LNPIKISAL 318
Query: 361 TGENL 365
G +
Sbjct: 319 KGTGI 323
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 32.9 bits (76), Expect = 0.46
Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 18/92 (19%)
Query: 274 QADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQE 333
+AD+ L ++D + + E L + + V NKLD + + +
Sbjct: 312 EADLILYLLDLGTERLD------DELTEIRELKAAHPAAKFLTVANKLDRAANADALIRA 365
Query: 334 IVTKLGAFLKQAGFRDSDIEYVPCSGLTGENL 365
I + E + S L G+ +
Sbjct: 366 I------------ADGTGTEVIGISALNGDGI 385
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10
PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 32.4 bits (73), Expect = 0.57
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 18 REQAGGKGRLHLVVIGHVDAGKSTLMGHL 46
G + +V +G +GK+TL G
Sbjct: 6 HHHHHGMASMIVVFVGTAGSGKTTLTGEF 34
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein
COOC; Zn-bound dimer, nickel binding protein, ATPase;
1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A*
3kje_A 3kji_A*
Length = 254
Score = 32.0 bits (73), Expect = 0.77
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 7/51 (13%)
Query: 272 ATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLD 322
A D+ + V++ ++G + L LG+ ++ VINK+
Sbjct: 151 AKAVDMMIAVIEPNL----NSIKTGLNIEK---LAGDLGIKKVRYVINKVR 194
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 32.0 bits (72), Expect = 0.85
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 9/37 (24%)
Query: 7 KDKLKKIEEYTREQAGGKGRLHLVVIGHVDAGKSTLM 43
D LK+I+ L++ V G +GKS+ +
Sbjct: 59 SDALKEIDS---------SVLNVAVTGETGSGKSSFI 86
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 31.8 bits (73), Expect = 0.86
Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 21/101 (20%)
Query: 272 ATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGV-------VINKLDTV 324
A +D +LV+D+T S E + + ++GV +NK+D +
Sbjct: 255 AKYSDALILVIDST--------FSENLLIETLQSSFEI-LREIGVSGKPILVTLNKIDKI 305
Query: 325 SWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENL 365
+ + ++V KL L F + +P S L NL
Sbjct: 306 NGDLYKKLDLVEKLSKELYSPIF-----DVIPISALKRTNL 341
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane,
nucleotide-binding, translation; 2.80A {Escherichia
coli} PDB: 3deg_C*
Length = 599
Score = 32.0 bits (74), Expect = 1.0
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 32 IGHVDAGKSTLMGHLLYLMGRVSARE 57
I H+D GKSTL ++ + G +S RE
Sbjct: 10 IAHIDHGKSTLSDRIIQICGGLSDRE 35
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like
domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus}
PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Length = 600
Score = 32.0 bits (74), Expect = 1.0
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 32 IGHVDAGKSTLMGHLLYLMGRVSARE 57
I HVD GKSTL LL G +S RE
Sbjct: 12 IAHVDHGKSTLADRLLEYTGAISERE 37
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 31.9 bits (71), Expect = 1.2
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 24 KGRLHLVVIGHVDAGKSTLMGHLL 47
+G L+V+G + GKST + L+
Sbjct: 67 QGVFRLLVLGDMKRGKSTFLNALI 90
Score = 30.7 bits (68), Expect = 2.3
Identities = 21/122 (17%), Positives = 37/122 (30%), Gaps = 23/122 (18%)
Query: 253 ITLLDAPG------HKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLV 306
I ++D+PG + + L V+ A++ E L
Sbjct: 176 IEIVDSPGLNDTEARNELSLGYVN---NCHAILFVMRASQPCTLG---------ERRYLE 223
Query: 307 RSLGVNQLGV--VINKLDTVSWSQDRFQEIVTKLGAFLKQA--GFRDSDIEYVPCSGLTG 362
+ L V ++N D V + V +L A + F + EY G
Sbjct: 224 NYIKGRGLTVFFLVNAWDQV-RESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNI 282
Query: 363 EN 364
+
Sbjct: 283 YD 284
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 31.3 bits (70), Expect = 1.4
Identities = 24/116 (20%), Positives = 43/116 (37%), Gaps = 10/116 (8%)
Query: 29 LVVIGHVDAGKSTLMGHLLYLMGRVSAREIHKHETESKKLGKQSFMYAWILDETGEESSC 88
L+V+G GKSTL+ L + + K Q ++ E G +
Sbjct: 11 LMVVGESGLGKSTLINSLF---LTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLL 67
Query: 89 EIPVDTTSAGNPVDSETIIKTIGPHGPVPLEDTY--YLDKLFHFAGERNPERVVHA 142
I VDT G+ VD+ + + + ++ + YL+ + P+ V
Sbjct: 68 TI-VDTPGFGDAVDNSNCWQPVIDY----IDSKFEDYLNAESRVNRRQMPDNRVQC 118
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 31.0 bits (71), Expect = 1.5
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 11/61 (18%)
Query: 24 KGRLHLVVIGHVDAGKSTLMGHLLYLMGRVSAREIHKHETESKKLGKQSFM--YAWILDE 81
+G+L L V G AGK++L+ ++ E+ E + K G+ SF ++WI+
Sbjct: 33 RGQL-LAVAGSTGAGKTSLLMMIM--------GELEPSEGKIKHSGRISFCSQFSWIMPG 83
Query: 82 T 82
T
Sbjct: 84 T 84
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 31.3 bits (72), Expect = 1.6
Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 23/92 (25%)
Query: 274 QADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQE 333
AD+ LL +DA G T + + L +V+NK+D V
Sbjct: 303 TADLVLLTIDAAT----------GWTTGDQEIYEQVKHRPLILVMNKIDLVE-------- 344
Query: 334 IVTKLGAFLKQAGFRDSDIEYVPCSGLTGENL 365
+ + ++ + V + + +
Sbjct: 345 -----KQLITSLEYPENITQIVHTAAAQKQGI 371
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 30.2 bits (69), Expect = 1.6
Identities = 13/49 (26%), Positives = 16/49 (32%), Gaps = 5/49 (10%)
Query: 274 QADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLD 322
QAD L +VD T + R + VV NK D
Sbjct: 83 QADRVLFMVDGTT-----TDAVDPAEIWPEFIARLPAKLPITVVRNKAD 126
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase;
chimerical protein, P-loop protein, capsule
biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus
aureus} PDB: 2ved_A*
Length = 271
Score = 30.3 bits (69), Expect = 2.2
Identities = 9/57 (15%), Positives = 20/57 (35%), Gaps = 17/57 (29%)
Query: 272 ATQADVALLVVDATRGEFETGFESGGQTREHAL-----LVRSLGVNQLGVVINKLDT 323
+ + VV++ + + L+ + G LGVV+N++
Sbjct: 212 SKFTGNVVYVVNS------------ENNNKDEVKKGKELIEATGAKLLGVVLNRMPK 256
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 30.6 bits (70), Expect = 2.3
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 10/49 (20%)
Query: 274 QADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLD 322
+AD+ L V+DA+ E ++ + + VVINK+D
Sbjct: 323 KADIVLFVLDASS----------PLDEEDRKILERIKNKRYLVVINKVD 361
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 30.4 bits (69), Expect = 2.4
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 11/61 (18%)
Query: 24 KGRLHLVVIGHVDAGKSTLMGHLLYLMGRVSAREIHKHETESKKLGKQSFM--YAWILDE 81
+G+L L V G AGK++L+ ++ E+ E + K G+ SF +WI+
Sbjct: 63 RGQL-LAVAGSTGAGKTSLLMMIM--------GELEPSEGKIKHSGRISFCSQNSWIMPG 113
Query: 82 T 82
T
Sbjct: 114 T 114
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 30.2 bits (69), Expect = 2.6
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 11/61 (18%)
Query: 24 KGRLHLVVIGHVDAGKSTLMGHLLYLMGRVSAREIHKHETESKKLGKQSFM--YAWILDE 81
+G L + V+G V GKS+L+ LL E+ K E G +++ AWI ++
Sbjct: 30 EGAL-VAVVGQVGCGKSSLLSALL--------AEMDKVEGHVAIKGSVAYVPQQAWIQND 80
Query: 82 T 82
+
Sbjct: 81 S 81
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding
domain, walker A motif, B protein kinase,
oligomerization; HET: ADP; 3.20A {Escherichia coli}
Length = 286
Score = 30.3 bits (69), Expect = 2.6
Identities = 6/57 (10%), Positives = 12/57 (21%), Gaps = 17/57 (29%)
Query: 272 ATQADVALLVVDATRGEFETGFESGGQTREHAL-----LVRSLGVNQLGVVINKLDT 323
L+V + G+ GV++N +
Sbjct: 222 GRHVGTTLMVARY------------AVNTLKEVETSLSRFEQNGIPVKGVILNSIFR 266
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine
kinase domain, signaling protein, transferase, inner
membrane, membrane; 2.50A {Escherichia coli}
Length = 299
Score = 30.4 bits (69), Expect = 2.7
Identities = 9/57 (15%), Positives = 15/57 (26%), Gaps = 17/57 (29%)
Query: 272 ATQADVALLVVDATRGEFETGFESGGQTREHAL-----LVRSLGVNQLGVVINKLDT 323
+LLV G + + GVN G ++N +
Sbjct: 234 GRSVGTSLLVARF------------GLNTAKEVSLSMQRLEQAGVNIKGAILNGVIK 278
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed
alpha-beta fold, elongated beta-sheet, walker A motif,
P-loop structural motif; 1.90A {Escherichia coli} SCOP:
c.37.1.10 PDB: 1p9n_A
Length = 174
Score = 29.4 bits (65), Expect = 3.5
Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 4/63 (6%)
Query: 31 VIGHVDAGKSTLMGHLLYLMG----RVSAREIHKHETESKKLGKQSFMYAWILDETGEES 86
GK+TL+ L+ + R + H+ + K GK S+ +
Sbjct: 11 FAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQTIVA 70
Query: 87 SCE 89
S +
Sbjct: 71 SQQ 73
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 30.6 bits (69), Expect = 3.5
Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 15/91 (16%)
Query: 300 REHALLVRSLGVNQLGVVINKLDTV--SWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPC 357
R +A + + G N G + T Q++ + + AG +EY+
Sbjct: 241 RVYAT-ILNAGTNTDGSKEQGV-TFPSGDVQEQL------IRSLYAPAGPDPESLEYIEA 292
Query: 358 SGLTGENLTTPSQVPALTSWY----SGPCLL 384
G TG + P ++ + + P L+
Sbjct: 293 HG-TGTKVGDPQELNGIVNALCATRREPLLI 322
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 4.1
Identities = 10/43 (23%), Positives = 11/43 (25%), Gaps = 22/43 (51%)
Query: 332 QEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPAL 374
Q + KL A LK L PAL
Sbjct: 20 QAL-KKLQASLK---------------------LYADDSAPAL 40
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 29.8 bits (66), Expect = 4.2
Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 15/112 (13%)
Query: 29 LVVIGHVDAGKSTLMGHLLYLMGRVSAREIHKHETESKKLGKQSFMYAWILDETGEESSC 88
L+V+G GKSTL+ L E + + ++ ++E G +
Sbjct: 21 LMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTV--EIEERGVKLRL 78
Query: 89 EIPVDTTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLF--HFAGERNPER 138
+ VDT G+ ++ KTI Y+D+ F + E R
Sbjct: 79 TV-VDTPGYGDAINCRDCFKTI----------ISYIDEQFERYLHDESGLNR 119
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 29.7 bits (66), Expect = 4.2
Identities = 25/115 (21%), Positives = 39/115 (33%), Gaps = 20/115 (17%)
Query: 29 LVVIGHVDAGKSTLMGHLLYLMGRVSAREIHKHETESKKLGKQSFMYAWILDETGEESSC 88
++ +G GKSTLM L + + G Q + L E+
Sbjct: 45 ILCVGETGLGKSTLMDTLF-------NTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKL 97
Query: 89 EIPVDTTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLF--HFAGERNPERVVH 141
I V T G+ ++ E K I ++D F + E RV+H
Sbjct: 98 TI-VSTVGFGDQINKEDSYKPI----------VEFIDAQFEAYLQEELKIRRVLH 141
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET:
GDP; 2.50A {Bacillus subtilis}
Length = 436
Score = 29.8 bits (68), Expect = 4.7
Identities = 18/98 (18%), Positives = 37/98 (37%), Gaps = 26/98 (26%)
Query: 275 ADVALLVVDATRGEFE-----TGF--ESGGQTREHALLVRSLGVNQLGVVINKLDTVSWS 327
++V +V+D G E G+ E+G +++ V +V+NK D V
Sbjct: 258 SEVVAVVLDGEEGIIEQDKRIAGYAHEAG----------KAV-V----IVVNKWDAVDKD 302
Query: 328 QDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENL 365
+ +E + + + + S LT + +
Sbjct: 303 ESTMKEFEENIRDHFQFLDY----APILFMSALTKKRI 336
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 29.4 bits (65), Expect = 5.8
Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 20/90 (22%)
Query: 251 KYITLLDAPGHKDFIPNMITG-----------ATQADVALLVVDATRGEFETGFES-GGQ 298
+ I+++D PG ++ A + D+ +L+ DA + E F G
Sbjct: 154 ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGA 213
Query: 299 TREHALLVRSLGVNQLGVVINKLDTVSWSQ 328
R H +++ VV+NK D V Q
Sbjct: 214 LRGHE--------DKIRVVLNKADMVETQQ 235
>2dy1_A Elongation factor G; translocation, GTP complex, structural
genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus}
SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1
PDB: 1wdt_A*
Length = 665
Score = 29.4 bits (67), Expect = 6.0
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 235 RGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRG 287
T+ G + + + LLDAPG+ DF+ + AD AL+ V A G
Sbjct: 58 HRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAG 110
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA
UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Length = 625
Score = 29.5 bits (66), Expect = 6.3
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 8/31 (25%)
Query: 228 GIASALNRGITMDVGQSQFETKTKYITLLDA 258
GI SA N + + + YI LD+
Sbjct: 441 GIGSASNTAVRL--------CRGFYIGQLDS 463
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 29.1 bits (66), Expect = 6.4
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 29 LVVIGHVDAGKSTLMGHL 46
L+V G+ +GKSTL+ +
Sbjct: 36 LLVAGNTGSGKSTLLQIV 53
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics,
cell membrane, cobalt transport, hydrolase, ION
transport; 2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 29.1 bits (66), Expect = 6.8
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 29 LVVIGHVDAGKSTLMGHL 46
++G GKSTL +
Sbjct: 37 TAILGGNGVGKSTLFQNF 54
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 29.0 bits (64), Expect = 7.2
Identities = 25/112 (22%), Positives = 39/112 (34%), Gaps = 16/112 (14%)
Query: 29 LVVIGHVDAGKSTLMGHLLYLMGRVSAREIHKHETESKKLGKQSFMYAWILDETGEESSC 88
L+V+G GKSTL+ L + + K Q ++ E G +
Sbjct: 34 LMVVGESGLGKSTLINSLF---LTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLL 90
Query: 89 EIPVDTTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLF--HFAGERNPER 138
I VDT G+ VD+ + + Y+D F + E R
Sbjct: 91 TI-VDTPGFGDAVDNSNCWQPV----------IDYIDSKFEDYLNAESRVNR 131
>3a3d_A PBP4, penicillin-binding protein 4; DACB, hydrolase; 1.60A
{Haemophilus influenzae} PDB: 3a3e_A* 3a3f_A* 3a3i_A*
Length = 453
Score = 28.9 bits (64), Expect = 7.4
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 331 FQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQ-VPALTSWYSGPCLLDVIDN 389
FQ + + L++ G R + SGL+ NL P + L L +++
Sbjct: 307 FQLGTLAVKSILQKQGIRFGNSILADGSGLSRHNLVAPKTMLSVLEYIAKNEDKLHLMET 366
Query: 390 F 390
F
Sbjct: 367 F 367
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded
beta-propeller, six- bladed beta-propeller; 1.79A
{Geobacillus stearothermophilus} SCOP: b.68.10.1
Length = 323
Score = 29.0 bits (66), Expect = 7.8
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 10/37 (27%)
Query: 610 DFIS-LLPETTHQVMILFSDRG---------IPDGFR 636
D + +L T V++LF+++G +PD
Sbjct: 39 DRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRW 75
>3rmr_A ATR1, avirulence protein; effector, RPP1-recognized, alpha-helical,
W-motif, seahorse, RPP1, R-protein, protein binding;
2.30A {Hyaloperonospora parasitica}
Length = 260
Score = 28.6 bits (63), Expect = 8.5
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 20/77 (25%)
Query: 100 PVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFEDRETIIK 159
P E +I+TI HG V L D + K+ R ++++ +R+ +I
Sbjct: 16 PSAVEALIETIDRHGRVSLNDEAKMKKV-----VRTWKKLI------------ERDDLIG 58
Query: 160 TIGPH---GPVPLEDTY 173
IG H P PL DTY
Sbjct: 59 EIGKHYFEAPGPLHDTY 75
>3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase,
cell WALL, peptidoglycan-anchor, secreted; 2.10A
{Streptococcus agalactiae COH1} PDB: 3fax_A*
Length = 877
Score = 29.1 bits (65), Expect = 8.5
Identities = 14/90 (15%), Positives = 26/90 (28%), Gaps = 4/90 (4%)
Query: 568 NWDLVGNNTPIFFVRDPFRFI-HFIHSQKRNPVTHLRDWDAFWDFISLLPETTHQVMILF 626
+W +N + I ++ +SL+ E Q I
Sbjct: 674 DWAAATDNNKHPISTKTQAYTAGLITLRRSTDAFRKLSKAEIDREVSLITE-VGQGDIKE 732
Query: 627 SDRGIPDGFRHMHGYGSHTFKLVNKDNEPV 656
D I ++ + G VN D++
Sbjct: 733 KDLVI--AYQTIDSKGDIYAVFVNADSKAR 760
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.418
Gapped
Lambda K H
0.267 0.0822 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 14,300,871
Number of extensions: 910191
Number of successful extensions: 2279
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2125
Number of HSP's successfully gapped: 161
Length of query: 902
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 800
Effective length of database: 3,853,851
Effective search space: 3083080800
Effective search space used: 3083080800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.5 bits)