Query psy1520
Match_columns 107
No_of_seqs 177 out of 1019
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 23:14:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1520.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1520hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4arc_A Leucine--tRNA ligase; l 100.0 1.2E-34 4.2E-39 256.5 4.3 91 13-103 521-656 (880)
2 2v0c_A Aminoacyl-tRNA syntheta 100.0 1.7E-31 5.7E-36 235.3 4.1 70 14-83 510-579 (878)
3 1wkb_A Leucyl-tRNA synthetase; 99.4 2.7E-14 9.2E-19 123.6 0.7 70 28-103 596-667 (810)
4 1wz2_A Leucyl-tRNA synthetase; 99.4 6.5E-14 2.2E-18 124.2 1.6 70 28-103 596-667 (967)
5 1gax_A Valrs, valyl-tRNA synth 99.2 1.2E-12 4.1E-17 115.7 1.9 71 27-103 473-545 (862)
6 1ile_A Ilers, isoleucyl-tRNA s 99.2 2.8E-12 9.4E-17 111.7 2.7 70 27-103 536-608 (821)
7 2d5b_A Methionyl-tRNA syntheta 99.1 1.3E-11 4.5E-16 100.5 2.0 66 30-102 246-313 (500)
8 2csx_A Methionyl-tRNA syntheta 99.1 2.4E-11 8.2E-16 99.2 1.8 64 31-102 247-311 (497)
9 1ffy_A Isoleucyl-tRNA syntheta 99.1 1.1E-11 3.8E-16 110.0 -0.5 64 33-103 546-612 (917)
10 2x1l_A Methionyl-tRNA syntheta 99.0 3.1E-11 1.1E-15 99.2 1.3 67 29-102 259-326 (524)
11 3c8z_A Cysteinyl-tRNA syntheta 98.8 7.2E-10 2.5E-14 89.9 1.4 64 34-103 243-308 (414)
12 4dlp_A Aminoacyl-tRNA syntheta 98.7 4.1E-09 1.4E-13 87.2 3.0 68 28-102 269-337 (536)
13 3kfl_A Methionyl-tRNA syntheta 98.7 9.1E-09 3.1E-13 86.3 3.1 65 31-102 290-355 (564)
14 3u1f_A Methionyl-tRNA syntheta 98.7 8.6E-09 2.9E-13 84.6 2.8 63 34-103 277-340 (542)
15 3h99_A Methionyl-tRNA syntheta 98.6 8.4E-09 2.9E-13 85.8 1.6 69 28-103 288-362 (560)
16 3sp1_A Cysteinyl-tRNA syntheta 98.3 1.8E-07 6.2E-12 79.2 2.1 66 31-103 248-316 (501)
17 1rqg_A Methionyl-tRNA syntheta 97.8 8.3E-06 2.8E-10 70.6 2.6 63 37-103 291-361 (722)
18 1li5_A Cysrs, cysteinyl-tRNA s 97.6 2E-05 7E-10 65.0 2.3 62 35-103 220-283 (461)
19 3tqo_A Cysteinyl-tRNA syntheta 97.1 0.00022 7.6E-09 59.6 2.7 61 35-102 223-285 (462)
20 3fnr_A Arginyl-tRNA synthetase 96.5 0.00066 2.2E-08 56.5 1.1 58 38-102 239-301 (464)
21 1irx_A Lysyl-tRNA synthetase; 95.4 0.0029 1E-07 52.5 0.2 62 34-102 229-295 (523)
22 1iq0_A Arginyl-tRNA synthetase 93.1 0.0075 2.6E-07 51.0 -2.2 61 38-103 350-411 (592)
23 2zue_A Arginyl-tRNA synthetase 92.9 0.036 1.2E-06 47.4 1.9 61 38-103 380-443 (629)
24 2cyb_A Tyrosyl-tRNA synthetase 85.6 0.54 1.9E-05 36.7 3.1 57 34-99 169-227 (323)
25 1f7u_A Arginyl-tRNA synthetase 84.9 0.43 1.5E-05 40.8 2.4 56 38-102 368-423 (607)
26 1n3l_A Tyrosyl-tRNA synthetase 61.8 5.4 0.00018 31.9 3.0 55 34-97 177-234 (372)
27 1p9k_A ORF, hypothetical prote 61.7 4 0.00014 25.4 1.8 46 56-101 23-68 (79)
28 2yxn_A Tyrosyl-tRNA synthetase 58.9 10 0.00035 29.6 4.1 56 35-99 191-248 (322)
29 2dlc_X Tyrosyl-tRNA synthetase 54.7 8.3 0.00028 31.0 3.0 55 34-97 181-239 (394)
30 2pid_A Tyrosyl-tRNA synthetase 53.7 11 0.00038 30.0 3.6 56 35-99 210-267 (356)
31 2el7_A Tryptophanyl-tRNA synth 49.8 26 0.00088 27.6 5.1 63 34-98 140-207 (337)
32 2ytu_A Friend leukemia integra 47.8 13 0.00045 26.2 2.8 46 9-54 7-54 (128)
33 1h3f_A Tyrosyl-tRNA synthetase 46.5 18 0.00063 29.7 3.9 57 34-99 186-245 (432)
34 2g36_A Tryptophanyl-tRNA synth 41.4 39 0.0013 26.6 4.9 62 35-98 153-217 (340)
35 1jil_A Tyrrs, tyrosyl-tRNA syn 40.5 33 0.0011 27.9 4.5 57 35-99 186-244 (420)
36 2ts1_A Tyrosyl-tRNA synthetase 39.9 31 0.0011 28.2 4.2 57 35-99 185-243 (419)
37 1y42_X Tyrosyl-tRNA synthetase 39.7 47 0.0016 26.8 5.2 62 35-99 232-306 (392)
38 2zp1_A Tyrosyl-tRNA synthetase 39.6 19 0.00066 27.9 2.8 51 35-98 163-216 (314)
39 2jan_A Tyrosyl-tRNA synthetase 39.0 39 0.0013 27.8 4.7 56 35-99 187-245 (432)
40 1sxe_A Transcriptional regulat 38.5 13 0.00045 24.8 1.5 30 25-54 14-43 (97)
41 2hvz_A Splicing factor, argini 37.9 12 0.0004 23.0 1.1 10 36-45 92-101 (101)
42 1wi9_A Protein C20ORF116 homol 36.9 9.5 0.00033 24.8 0.6 29 70-101 40-70 (72)
43 2cqj_A BRMS2, U3 small nucleol 35.9 16 0.00056 22.6 1.6 42 56-97 10-51 (71)
44 2inc_A Toluene, O-xylene monoo 34.5 3 0.0001 35.1 -2.7 47 11-68 423-475 (491)
45 2cya_A Tyrosyl-tRNA synthetase 32.0 29 0.00098 27.6 2.8 41 35-84 177-217 (364)
46 1yi8_B Tryptophanyl-tRNA synth 31.8 77 0.0026 25.0 5.2 61 35-98 162-227 (351)
47 3vgj_A Tyrosyl-tRNA synthetase 31.7 50 0.0017 26.4 4.2 55 35-97 200-259 (373)
48 2ip1_A Tryptophanyl-tRNA synth 30.2 55 0.0019 26.8 4.2 55 36-99 250-309 (432)
49 1c05_A Ribosomal protein S4 de 28.7 31 0.0011 24.4 2.2 54 47-101 45-98 (159)
50 2xzm_D Ribosomal protein S4 co 26.3 47 0.0016 24.3 2.9 49 50-99 104-152 (181)
51 1i6k_A TRPRS, tryptophanyl-tRN 26.2 95 0.0032 24.2 4.8 58 34-93 136-199 (328)
52 3i05_A Tryptophanyl-tRNA synth 25.7 56 0.0019 26.5 3.5 53 36-97 225-281 (395)
53 3tze_A Tryptophanyl-tRNA synth 24.4 79 0.0027 25.8 4.2 54 36-98 244-302 (406)
54 3tzl_A Tryptophanyl-tRNA synth 24.3 1.1E+02 0.0038 23.8 4.9 61 35-97 139-203 (322)
55 2yy5_A Tryptophanyl-tRNA synth 24.3 1.1E+02 0.0038 24.0 4.9 63 35-99 147-218 (348)
56 3u52_A Phenol hydroxylase comp 22.2 2.7 9.4E-05 35.6 -5.1 53 11-71 427-483 (511)
57 3jxe_A Tryptophanyl-tRNA synth 20.6 66 0.0023 26.1 3.0 53 36-97 208-265 (392)
No 1
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=100.00 E-value=1.2e-34 Score=256.51 Aligned_cols=91 Identities=34% Similarity=0.664 Sum_probs=84.9
Q ss_pred ccccCCCCCCCCCChhhhcccccceEEeecchhHHHHHHHHHHHHHHHHhcCCCCCCCccccccccceeecCee------
Q psy1520 13 KTKSRDINAEVSFNTDKAQDWLPVDIYIGGKEHAVLHLYYARFIAHFLHAQGKTPAREPFKRLLVQGMIMGQTY------ 86 (107)
Q Consensus 13 ~~~~dp~n~~~~fd~~~~~~WmPVD~YIGGiEHAilHLLYaRF~~K~L~D~G~v~~~EPF~~Ll~QGMV~~~~~------ 86 (107)
-+|+||+|++++||++++++|||||+||||+||||+||||||||+++|+|+|+++.+|||++|++||||+++++
T Consensus 521 ~r~~~p~~~~~~~~~~~~~~~~PvD~yigG~EHailHllyaRf~~~~L~~~g~~~~~ePFk~ll~qGmVl~~~~~~~d~~ 600 (880)
T 4arc_A 521 ARYTCPQYKEGMLDSEAANYWLPVDIYIGGIEHAIMHLLYFRFFHKLMRDAGMVNSDEPAKQLLCQGMVLADAFYYVGEN 600 (880)
T ss_dssp HHTTSTTCCSSSCCHHHHHHHCSEEEEECCGGGTTTHHHHHHHHHHHHHHTTSCCCSCSEEEEECCCCEEEEEEEEECTT
T ss_pred HhhcCCCccccccChHHHhccCCceEeecchhhHHHHHHHHHHHHHHHHHhhcccCCCChHHeEEeceEeecceeccccC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999986655
Q ss_pred --------------------------------------ee-cCCCceeCCCceeec
Q psy1520 87 --------------------------------------RE-KTSGKYLKPDEVFTK 103 (107)
Q Consensus 87 --------------------------------------k~-ks~Gn~v~p~ev~~~ 103 (107)
|| ||+||+|+|+|++.+
T Consensus 601 G~~~~~~~~~v~~~~~~~~~~~~~~~~~G~~v~~~~~eKMSKSkGNvVdP~diIek 656 (880)
T 4arc_A 601 GERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGMSKMSKSKNNGIDPQVMVER 656 (880)
T ss_dssp SCEEEECSTTCEEEECTTCCEEEEECTTCCBCEEEEEEECCTTTTCCCCHHHHHHH
T ss_pred CcccccCHHHhccccccccccccccccCCccccccccccccCcCCCCCCHHHHHHH
Confidence 75 999999999998753
No 2
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=99.96 E-value=1.7e-31 Score=235.27 Aligned_cols=70 Identities=47% Similarity=0.910 Sum_probs=67.9
Q ss_pred cccCCCCCCCCCChhhhcccccceEEeecchhHHHHHHHHHHHHHHHHhcCCCCCCCccccccccceeec
Q psy1520 14 TKSRDINAEVSFNTDKAQDWLPVDIYIGGKEHAVLHLYYARFIAHFLHAQGKTPAREPFKRLLVQGMIMG 83 (107)
Q Consensus 14 ~~~dp~n~~~~fd~~~~~~WmPVD~YIGGiEHAilHLLYaRF~~K~L~D~G~v~~~EPF~~Ll~QGMV~~ 83 (107)
+|++|+|++.+|+++.+++|+|||+||||+||||+||||||||+++|+|+|++..+|||++|++||||++
T Consensus 510 ~~~~p~~~~~~~~~~~~~~~~P~D~yi~G~d~~ilhl~y~r~~~~~l~~~g~~~~~~Pfk~l~~~G~vl~ 579 (878)
T 2v0c_A 510 RYTDPHNDRLPFDPEKANAWMPVDQYIGGVEHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGLFTQGMVLA 579 (878)
T ss_dssp HTTSTTCSSSSCCHHHHHHHCSBSEEECCGGGTTTHHHHHHHHHHHHHHTTSCSCSCSBSBEECCCCEEE
T ss_pred hccCccccccccCHHHHccCCCCeEEEechHHHHHHHHHHHHHHHHHHHhhcccCCCchHhheecceEec
Confidence 4789999999999999999999999999999999999999999999999999999999999999999987
No 3
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=99.40 E-value=2.7e-14 Score=123.57 Aligned_cols=70 Identities=20% Similarity=0.297 Sum_probs=62.0
Q ss_pred hhhcccccceEEeecchhHHHHHHHHHHHHHHHHhcCCCCCCCcc-ccccccceeecCeeee-cCCCceeCCCceeec
Q psy1520 28 DKAQDWLPVDIYIGGKEHAVLHLYYARFIAHFLHAQGKTPAREPF-KRLLVQGMIMGQTYRE-KTSGKYLKPDEVFTK 103 (107)
Q Consensus 28 ~~~~~WmPVD~YIGGiEHAilHLLYaRF~~K~L~D~G~v~~~EPF-~~Ll~QGMV~~~~~k~-ks~Gn~v~p~ev~~~ 103 (107)
+..++|+|+|+|+||+||+..|+.|.+|++.++.+.+ |+ ++++.||||+.++.|| ||+||+|+|.|++.+
T Consensus 596 ~~~~~~~p~Di~~~G~D~~~~H~~~~~~~~~~~~~~~------~~pk~v~~~G~v~~~G~KMSKS~GNvv~p~dli~~ 667 (810)
T 1wkb_A 596 EEFEYWYPLDWRCSGKDLIPNHLTFFIFNHVAIFREE------HWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEE 667 (810)
T ss_dssp HHHHHHCSCSEEEEEGGGTTTHHHHHHHHHHHHSCGG------GSCCEEEEECCEEETTBCCCTTTTCCCBHHHHHHH
T ss_pred HHHHhhCCceEEeecccccccHHHHHHHHHHHHcCcc------ccccEEEEEeEEEeCCeehhhcCCCcCCHHHHHHH
Confidence 4578999999999999999999999999999987653 45 8999999999888775 999999999998753
No 4
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=99.38 E-value=6.5e-14 Score=124.20 Aligned_cols=70 Identities=20% Similarity=0.297 Sum_probs=62.4
Q ss_pred hhhcccccceEEeecchhHHHHHHHHHHHHHHHHhcCCCCCCCcc-ccccccceeecCeeee-cCCCceeCCCceeec
Q psy1520 28 DKAQDWLPVDIYIGGKEHAVLHLYYARFIAHFLHAQGKTPAREPF-KRLLVQGMIMGQTYRE-KTSGKYLKPDEVFTK 103 (107)
Q Consensus 28 ~~~~~WmPVD~YIGGiEHAilHLLYaRF~~K~L~D~G~v~~~EPF-~~Ll~QGMV~~~~~k~-ks~Gn~v~p~ev~~~ 103 (107)
+..++|+|+|+|+||+||+..|+.|.+|++.++.+.+ || +++++||||+.++.|| ||+||+|+|.|++.+
T Consensus 596 ~~~~~w~P~Di~~~G~D~i~~H~~~~~~~~~a~~~~~------~~pk~v~~~G~v~~~G~KMSKS~GNvv~p~d~i~~ 667 (967)
T 1wz2_A 596 EEFEYWYPLDWRCSGKDLIPNHLTFFIFNHVAIFREE------HWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEE 667 (967)
T ss_dssp HHHHHHCSCSEEEEEGGGTTTHHHHHHHHHHHHSCST------TSCCCEEEECCEEESSSCCCTTTCCCCBHHHHHHT
T ss_pred HHHHhhCCCeEEeeeeCcchhHHHHHHHHHHHHcCcc------cccceEEEeeEEeeCCEEccccccCCCCHHHHHHH
Confidence 4578999999999999999999999999999987653 55 8999999999888775 999999999998754
No 5
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=99.25 E-value=1.2e-12 Score=115.71 Aligned_cols=71 Identities=25% Similarity=0.573 Sum_probs=61.6
Q ss_pred hhhhcccccceEEeecchhHHHHHHHHHHHHHHHHhcCCCCCCCccccccccceeec-Ceeee-cCCCceeCCCceeec
Q psy1520 27 TDKAQDWLPVDIYIGGKEHAVLHLYYARFIAHFLHAQGKTPAREPFKRLLVQGMIMG-QTYRE-KTSGKYLKPDEVFTK 103 (107)
Q Consensus 27 ~~~~~~WmPVD~YIGGiEHAilHLLYaRF~~K~L~D~G~v~~~EPF~~Ll~QGMV~~-~~~k~-ks~Gn~v~p~ev~~~ 103 (107)
.+..++|+|+|+|++|.| ++|..++|++...+...|. +||++++.||||++ ++.|| ||+||+|+|.|++.+
T Consensus 473 ~~~~~~~~P~d~~v~G~D--ii~~W~a~~~~~~~~~~g~----~Pfk~v~~hG~vld~~G~KMSKSlGNvIdP~dli~~ 545 (862)
T 1gax_A 473 TEDLKAFYPGDVLVTGYD--ILFLWVSRMEVSGYHFMGE----RPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVER 545 (862)
T ss_dssp CHHHHHSCSBSCEEEEGG--GTTTTHHHHHHHHHHHSSS----CSBSEEEEECCEECTTSCBCCTTTTCCCCHHHHHHH
T ss_pred hHHHHhhCCceEEecCcc--ccccHHHHHHHHHHHhcCC----CcccEEEEeeeEEcCCCCCccccCCCCCCHHHHHHH
Confidence 356889999999999999 5677899999999988875 79999999999995 55665 999999999998753
No 6
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=99.22 E-value=2.8e-12 Score=111.68 Aligned_cols=70 Identities=20% Similarity=0.357 Sum_probs=54.7
Q ss_pred hhhhcccccceEEeecchhHHHHHHHHHHHHHHHHhcCCC-CCCCccccccccceeec-Ceeee-cCCCceeCCCceeec
Q psy1520 27 TDKAQDWLPVDIYIGGKEHAVLHLYYARFIAHFLHAQGKT-PAREPFKRLLVQGMIMG-QTYRE-KTSGKYLKPDEVFTK 103 (107)
Q Consensus 27 ~~~~~~WmPVD~YIGGiEHAilHLLYaRF~~K~L~D~G~v-~~~EPF~~Ll~QGMV~~-~~~k~-ks~Gn~v~p~ev~~~ 103 (107)
++..++|+|+|+|+||+||+..| ...|..++.. ...+||+++++||||+. ++.|| ||+||+|+|.|++.+
T Consensus 536 ~~~f~~~~P~dl~~~G~D~~r~w-------~~~~~~~~~~~~~~~pf~~v~~hg~vl~~~G~KMSKS~GNvV~p~dli~~ 608 (821)
T 1ile_A 536 EEVFRESFPADFIAEGIDQTRGW-------FNSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMSKSKGNVVDPWDIIRK 608 (821)
T ss_dssp HHHHHHHSSBSBEEEEGGGGGTH-------HHHHHHHHHHHHSSCSBSEEEEECCEECTTSSCCCTTTTCCCCHHHHHTT
T ss_pred hHHHhhcCCcccccchhhhhccH-------HHHHHHHHHHhcCCCCcceEEEEeeEECCCCCCCCccCCCCCCHHHHHHH
Confidence 35567899999999999997554 4444444333 24679999999999997 66665 999999999998764
No 7
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=99.12 E-value=1.3e-11 Score=100.48 Aligned_cols=66 Identities=23% Similarity=0.374 Sum_probs=55.2
Q ss_pred hcccccceEEeecchhHHHHHHHHHHHHHHHHhcCCCCCCCccccccccceeec-Ceeee-cCCCceeCCCceee
Q psy1520 30 AQDWLPVDIYIGGKEHAVLHLYYARFIAHFLHAQGKTPAREPFKRLLVQGMIMG-QTYRE-KTSGKYLKPDEVFT 102 (107)
Q Consensus 30 ~~~WmPVD~YIGGiEHAilHLLYaRF~~K~L~D~G~v~~~EPF~~Ll~QGMV~~-~~~k~-ks~Gn~v~p~ev~~ 102 (107)
.++|.|+|+|+||.||+.-|++| |...|..+|. +||++++.||||+. ++.|| ||+||+|+|.|++.
T Consensus 246 ~~~~~p~di~~~G~D~~~fh~~~---~~a~~~~~g~----~~~~~v~~~G~v~~~~G~KMSKS~GN~i~p~d~i~ 313 (500)
T 2d5b_A 246 YRTFWPHAWHLIGKDILKPHAVF---WPTMLKAAGI----PMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLE 313 (500)
T ss_dssp HHHHGGGEEEEEEGGGHHHHHTH---HHHHHHHHTC----CCCSEEEEECCEECTTSSCCCTTTTCCCCHHHHHH
T ss_pred HHHcCCCeEEEEeechhhhHHHH---HHHHHHHcCC----CCCcEEEECceEEeCCCCcccccCCCCCCHHHHHH
Confidence 45667999999999999999884 5555555664 79999999999998 77775 99999999999875
No 8
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=99.08 E-value=2.4e-11 Score=99.23 Aligned_cols=64 Identities=28% Similarity=0.433 Sum_probs=54.8
Q ss_pred cccccceEEeecchhHHHHHHHHHHHHHHHHhcCCCCCCCccccccccceeecCeeee-cCCCceeCCCceee
Q psy1520 31 QDWLPVDIYIGGKEHAVLHLYYARFIAHFLHAQGKTPAREPFKRLLVQGMIMGQTYRE-KTSGKYLKPDEVFT 102 (107)
Q Consensus 31 ~~WmPVD~YIGGiEHAilHLLYaRF~~K~L~D~G~v~~~EPF~~Ll~QGMV~~~~~k~-ks~Gn~v~p~ev~~ 102 (107)
++| |+|+|+||.||+.-|.+ ||...|..+|. +||++++.||||+.++.|| ||+||+|+|.|++.
T Consensus 247 ~~~-p~di~~~G~D~~~~H~~---~~~a~l~~~g~----~~~~~~~~~G~v~~~G~KMSKS~GN~i~~~dli~ 311 (497)
T 2csx_A 247 IYW-PADLHLVGKDILRFHTV---YWPAFLMSLGY----ELPKKVFAHGWWTVEGKKMSKTLGNVVDPYEVVQ 311 (497)
T ss_dssp HHC-SCSCEEEEGGGHHHHHT---HHHHHHHHHTC----CCCSCEEEECCEESSSSBCCTTTTCCCCHHHHHH
T ss_pred hhC-CceEEEeecchhHhHHH---HHHHHHHHcCC----CCCcEEEECcEEEeCCceeCCcCCCCCCHHHHHH
Confidence 566 99999999999999987 46666666674 7999999999999888775 99999999999865
No 9
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=99.07 E-value=1.1e-11 Score=110.00 Aligned_cols=64 Identities=25% Similarity=0.449 Sum_probs=50.4
Q ss_pred cccceEEeecchhHHHHHHHHHHHHHH-HHhcCCCCCCCccccccccceeec-Ceeee-cCCCceeCCCceeec
Q psy1520 33 WLPVDIYIGGKEHAVLHLYYARFIAHF-LHAQGKTPAREPFKRLLVQGMIMG-QTYRE-KTSGKYLKPDEVFTK 103 (107)
Q Consensus 33 WmPVD~YIGGiEHAilHLLYaRF~~K~-L~D~G~v~~~EPF~~Ll~QGMV~~-~~~k~-ks~Gn~v~p~ev~~~ 103 (107)
.+|+|+|++|+||...| |+++ +...+ +...+||+++++||||+. ++.|| ||+||+|+|.|++.+
T Consensus 546 ~~P~Dl~~~G~D~~r~w------f~~~l~~s~~-~~g~~Pfk~v~~hG~V~d~~G~KMSKSlGNvV~P~dvi~~ 612 (917)
T 1ffy_A 546 SFPADMYLEGSDQYRGW------FNSSITTSVA-TRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVIVPDQVVKQ 612 (917)
T ss_dssp CSSBSEEEEEGGGGTTH------HHHHHHHHHH-HHSSCSBSEEEEECCEECTTSCCCCSSSSCCCCHHHHHHH
T ss_pred CCCceEEEEEecccccH------HHHHHHHHHH-hhCCCcccceeEeeeEEcCCCcCcccccCCcCChHHHHHh
Confidence 37999999999997776 3333 33333 345689999999999996 66675 999999999998753
No 10
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=99.05 E-value=3.1e-11 Score=99.17 Aligned_cols=67 Identities=22% Similarity=0.417 Sum_probs=56.5
Q ss_pred hhcccccceEEeecchhHHHHHHHHHHHHHHHHhcCCCCCCCccccccccceeecCeeee-cCCCceeCCCceee
Q psy1520 29 KAQDWLPVDIYIGGKEHAVLHLYYARFIAHFLHAQGKTPAREPFKRLLVQGMIMGQTYRE-KTSGKYLKPDEVFT 102 (107)
Q Consensus 29 ~~~~WmPVD~YIGGiEHAilHLLYaRF~~K~L~D~G~v~~~EPF~~Ll~QGMV~~~~~k~-ks~Gn~v~p~ev~~ 102 (107)
..++|.|+|+|+||.||+.-|.+| |...|...|. +||++++.||||+.++.|| ||+||+|+|.|++.
T Consensus 259 ~~~~~~p~di~~~G~D~~~fh~~~---~~a~l~~~g~----~~~~~v~~hG~v~~~G~KMSKS~GN~v~p~d~i~ 326 (524)
T 2x1l_A 259 SFRRYWPADLHMIGKDIIRFHTVY---WPAFLMSAGL----PLPKRIFAHGWLLNRGEKMSKSIGNVVDPVNLVD 326 (524)
T ss_dssp HHHHHCSCSEEEEEGGGHHHHHTH---HHHHHHHHTC----CCCSCEEEECCEEECSCSEETTTEESSCHHHHHH
T ss_pred HHHhhCCCeEEEEeechhHhHHHH---HHHHHHHCCC----CCCcEEEECcEEEeCCcccCCcCCCCCCHHHHHH
Confidence 355677999999999999888774 5566666675 7999999999999888775 99999999999875
No 11
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=98.82 E-value=7.2e-10 Score=89.93 Aligned_cols=64 Identities=23% Similarity=0.272 Sum_probs=45.8
Q ss_pred ccceEEeecchhHHHHHHHHHHHHHHHHhcCCCCCCCcccccccc-ceeecCeeee-cCCCceeCCCceeec
Q psy1520 34 LPVDIYIGGKEHAVLHLYYARFIAHFLHAQGKTPAREPFKRLLVQ-GMIMGQTYRE-KTSGKYLKPDEVFTK 103 (107)
Q Consensus 34 mPVD~YIGGiEHAilHLLYaRF~~K~L~D~G~v~~~EPF~~Ll~Q-GMV~~~~~k~-ks~Gn~v~p~ev~~~ 103 (107)
-|+|+++||.+|+..|..|.+++..++.+ .+||.+.+.| |||..++.|| ||+||+|+|.|++.+
T Consensus 243 ~~~di~~~G~D~~~~H~~~~~a~~~a~~g------~~~~~~~~~h~g~v~~~G~KMSKS~GN~v~~~~ll~~ 308 (414)
T 3c8z_A 243 TGLDIQGGGSDLIFPHHEYSAAHAESVTG------ERRFARHYVHTGMIGWDGHKMSKSRGNLVLVSQLRAQ 308 (414)
T ss_dssp SCEEEEEEEGGGTTTHHHHHHHHHHHHHC------CSCSEEEEEEECCBC-------------CBHHHHHHT
T ss_pred CCceEEEeccccccHHHHHHHHHHHHhcC------CCCcCeEEEEcCEEecCCeEcccccCCcCCHHHHhhc
Confidence 49999999999999999999999999853 3699987776 9999887775 999999999998865
No 12
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=98.72 E-value=4.1e-09 Score=87.24 Aligned_cols=68 Identities=24% Similarity=0.392 Sum_probs=45.9
Q ss_pred hhhcccccceEEeecchhHHHHHHHHHHHHHHHHhcCCCCCCCccccccccceeecCeeee-cCCCceeCCCceee
Q psy1520 28 DKAQDWLPVDIYIGGKEHAVLHLYYARFIAHFLHAQGKTPAREPFKRLLVQGMIMGQTYRE-KTSGKYLKPDEVFT 102 (107)
Q Consensus 28 ~~~~~WmPVD~YIGGiEHAilHLLYaRF~~K~L~D~G~v~~~EPF~~Ll~QGMV~~~~~k~-ks~Gn~v~p~ev~~ 102 (107)
++.++|-|.|+|+.|.+|..-|.+| |...|...|+ +||++++.+|||+.++.|| ||+||+|+|.|++.
T Consensus 269 ~~~~~~~p~dv~~~G~D~~~fh~~~---~~a~l~a~g~----~~~~~v~~hg~v~~~G~KMSKS~GNvi~p~d~i~ 337 (536)
T 4dlp_A 269 DERWAYWPANAHIIGKDISRFHAVY---WPAFLMSAQL----PLPKRVFAHGFLFNRGEKMSKSVGNVIDPFELVE 337 (536)
T ss_dssp SGGGGGCSCSEEEEEGGGHHHHHTH---HHHHHHHTTC----CCCSCEEEECCEEC------------CCHHHHHH
T ss_pred hHHHhhCCcceEEeechHHHHHHHH---HHHHHHHCCC----CCCcEEEeeeeEeeCCceecccCCCCCCHHHHHH
Confidence 3456777999999999999988776 4444444564 6899999999999888775 99999999999865
No 13
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=98.65 E-value=9.1e-09 Score=86.26 Aligned_cols=65 Identities=23% Similarity=0.303 Sum_probs=55.1
Q ss_pred cccccceEEeecchhHHHHHHHHHHHHHHHHhcCCCCCCCccccccccceeecCeeee-cCCCceeCCCceee
Q psy1520 31 QDWLPVDIYIGGKEHAVLHLYYARFIAHFLHAQGKTPAREPFKRLLVQGMIMGQTYRE-KTSGKYLKPDEVFT 102 (107)
Q Consensus 31 ~~WmPVD~YIGGiEHAilHLLYaRF~~K~L~D~G~v~~~EPF~~Ll~QGMV~~~~~k~-ks~Gn~v~p~ev~~ 102 (107)
++|-|.|+|+.|.+|..-|.+| |..+|...|+ +|+++++.||||..++.|| ||+||+|+|.|++.
T Consensus 290 ~~~wp~dv~~~GkDii~FH~~~---wpa~L~a~g~----~~~~~v~~hg~v~~~G~KMSKS~GNvV~p~d~i~ 355 (564)
T 3kfl_A 290 LNRWPADVHVVGKDILKFHAIY---WPAFLMSAEL----PLPERLVSHGWWTKDHKKISKSLGNAFDPVEKAK 355 (564)
T ss_dssp TTCCSCSEEEEEGGGHHHHHTH---HHHHHHHTTC----CCCSCEEEECCEEETTEECCTTTTCCCCHHHHHH
T ss_pred hhcCccceEEEeecccchHHHH---HHHHHHhCCC----CCCcEEEEcccEeeCCccccccCCCCCCHHHHHH
Confidence 4566999999999999988775 6666667775 6999999999998888875 99999999999864
No 14
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=98.65 E-value=8.6e-09 Score=84.64 Aligned_cols=63 Identities=24% Similarity=0.372 Sum_probs=53.4
Q ss_pred ccceEEeecchhHHHHHHHHHHHHHHHHhcCCCCCCCccccccccceeecCeeee-cCCCceeCCCceeec
Q psy1520 34 LPVDIYIGGKEHAVLHLYYARFIAHFLHAQGKTPAREPFKRLLVQGMIMGQTYRE-KTSGKYLKPDEVFTK 103 (107)
Q Consensus 34 mPVD~YIGGiEHAilHLLYaRF~~K~L~D~G~v~~~EPF~~Ll~QGMV~~~~~k~-ks~Gn~v~p~ev~~~ 103 (107)
.|.|+|++|.|+..-|.+| |...|...|+ .|++.++++|||..++.|| ||+||+|+|.|++.+
T Consensus 277 ~p~d~~~~G~D~~~fh~~~---~~a~l~~~g~----~~~~~v~~hg~l~~~G~KMSKSlGNvi~p~~~i~~ 340 (542)
T 3u1f_A 277 FPADVHVIGKDILKFHAIY---WPAFLLSAGL----PLPKKIVAHGWWTKDRKKISKSLGNVFDPVEKAEE 340 (542)
T ss_dssp CSCSEEEEEGGGHHHHHTH---HHHHHHHHTC----CCCSCEEEECCCEETTBCCBTTTTBCCCHHHHHHH
T ss_pred CcceEEEecccccccccch---hHHHHHhhcc----cccceeccccceecCCceeccccCCCCChhHHHhh
Confidence 5999999999999988776 5555555564 6899999999999998885 999999999998753
No 15
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=98.61 E-value=8.4e-09 Score=85.81 Aligned_cols=69 Identities=19% Similarity=0.317 Sum_probs=58.4
Q ss_pred hhhcccccce-----EEeecchhHHHHHHHHHHHHHHHHhcCCCCCCCccccccccceeecCeeee-cCCCceeCCCcee
Q psy1520 28 DKAQDWLPVD-----IYIGGKEHAVLHLYYARFIAHFLHAQGKTPAREPFKRLLVQGMIMGQTYRE-KTSGKYLKPDEVF 101 (107)
Q Consensus 28 ~~~~~WmPVD-----~YIGGiEHAilHLLYaRF~~K~L~D~G~v~~~EPF~~Ll~QGMV~~~~~k~-ks~Gn~v~p~ev~ 101 (107)
+..+.|.|.| +++.|.+|..-|.. ||..+|..+|+ ..| ++++.||||+.++.|| ||+||+|+|+|++
T Consensus 288 ~~~~~~wp~~~~~~~~~~~G~D~~~fh~~---~~~a~l~~~g~---~~p-~~v~~hg~v~~~G~KMSKS~GNvv~p~d~i 360 (560)
T 3h99_A 288 VSFDEYWKKDSTAELYHFIGKDIVYFLSL---FWPAMLEGSNF---RKP-SNLFVHGYVTVNGAKMSKSRGTFIKASTWL 360 (560)
T ss_dssp SHHHHHHBTTCCSEEEEEEEGGGHHHHHT---HHHHHHHHTTB---CCC-SEEEEECCEEETTEECCTTTTCCCBHHHHH
T ss_pred hhHHHhCcCCCCceeEEEeccccchhHHH---HHHHHHHhCCC---CCC-cEEEEEeEEEeCCeeccccCCCcCCHHHHH
Confidence 3456777888 99999999987754 68888888886 677 9999999999988875 9999999999987
Q ss_pred ec
Q psy1520 102 TK 103 (107)
Q Consensus 102 ~~ 103 (107)
.+
T Consensus 361 ~~ 362 (560)
T 3h99_A 361 NH 362 (560)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 16
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=98.30 E-value=1.8e-07 Score=79.23 Aligned_cols=66 Identities=17% Similarity=0.324 Sum_probs=49.9
Q ss_pred cccc-cceEEeecchhHHHHHHHHHHHHHHHHhcCCCCCCCcccccccc-ceeecCeeee-cCCCceeCCCceeec
Q psy1520 31 QDWL-PVDIYIGGKEHAVLHLYYARFIAHFLHAQGKTPAREPFKRLLVQ-GMIMGQTYRE-KTSGKYLKPDEVFTK 103 (107)
Q Consensus 31 ~~Wm-PVD~YIGGiEHAilHLLYaRF~~K~L~D~G~v~~~EPF~~Ll~Q-GMV~~~~~k~-ks~Gn~v~p~ev~~~ 103 (107)
++|- |+|+..||+++..-|..|-.+.+.++.. +||.+.+.| |||+-++.|| ||+||+|+|.|++.+
T Consensus 248 ~~lg~~~DIH~gG~DLifpHheneiAqs~a~~g-------~~~~~~w~H~g~v~~~G~KMSKSlGN~it~~dll~~ 316 (501)
T 3sp1_A 248 EYFKDALDIHLGGVDHIGVHHINEIAIAECFLN-------KKWCDVFVHGEFLIMDYNKMSKSRGNFITVKDLEDQ 316 (501)
T ss_dssp HHTTTCCCEEEEEGGGTTTHHHHHHHHHHHHHT-------SCCCSEEEEECCEECC----------CCCHHHHHHT
T ss_pred HHcCCCceEEeeccccccchHHHHHHHHHHccC-------CCCCeEEEEeeeEeeCCeEccccCCCcCCHHHHHhc
Confidence 4452 6899999999999999999999998863 699998888 9999888885 999999999998765
No 17
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=97.78 E-value=8.3e-06 Score=70.59 Aligned_cols=63 Identities=17% Similarity=0.148 Sum_probs=48.7
Q ss_pred eEEeecchhHHHHHHHHHHHHHHHHhcCC------C-CCCCccccccccceeecCeeee-cCCCceeCCCceeec
Q psy1520 37 DIYIGGKEHAVLHLYYARFIAHFLHAQGK------T-PAREPFKRLLVQGMIMGQTYRE-KTSGKYLKPDEVFTK 103 (107)
Q Consensus 37 D~YIGGiEHAilHLLYaRF~~K~L~D~G~------v-~~~EPF~~Ll~QGMV~~~~~k~-ks~Gn~v~p~ev~~~ 103 (107)
+++++|.+...-|.+| |--.|.-.|. . ....| ++++.||||+.++.|| ||+||+|+|.|++.+
T Consensus 291 ~~h~~GkDii~fH~~~---wpA~l~~~~~~l~~d~~rg~~~P-k~v~~hG~v~~~G~KMSKS~GNvV~p~d~i~~ 361 (722)
T 1rqg_A 291 VIHFIGKDNIPFHAIF---WPAFLMAYGKYKDEEVEAEWNLP-YDIPANEYLTLEGKKFSTSRNWAIWVHEFLDV 361 (722)
T ss_dssp EEEEEEGGGHHHHHTH---HHHHHHTTCCBCSSSCCBCBCCC-SBCCEECCEEETTEECBTTTTBSCBHHHHTTT
T ss_pred eEEEccccccccchhh---hHHHHhccCCCcccccccCCCCC-CEEEEeeeEEeCCeeeeeeCCCcCCHHHHHHh
Confidence 4899999999888765 4334554442 1 13678 9999999999988875 999999999998754
No 18
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=97.61 E-value=2e-05 Score=65.00 Aligned_cols=62 Identities=18% Similarity=0.236 Sum_probs=48.3
Q ss_pred cceEEeecchhHHHHHHHHHHHHHHHHhcCCCCCCCcccc-ccccceeecCeeee-cCCCceeCCCceeec
Q psy1520 35 PVDIYIGGKEHAVLHLYYARFIAHFLHAQGKTPAREPFKR-LLVQGMIMGQTYRE-KTSGKYLKPDEVFTK 103 (107)
Q Consensus 35 PVD~YIGGiEHAilHLLYaRF~~K~L~D~G~v~~~EPF~~-Ll~QGMV~~~~~k~-ks~Gn~v~p~ev~~~ 103 (107)
|+|+.+||.++..-|..|--....++ .| .||.+ ++.+|||+.++.|| ||+||+|+|.|++.+
T Consensus 220 ~~dih~gG~Dl~fpH~~~~~aq~~a~--~g-----~~~~~~~~h~g~v~~~G~KMSKS~GN~v~~~dll~~ 283 (461)
T 1li5_A 220 HFDIHGGGSDLMFPHHENEIAQSTCA--HD-----GQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKY 283 (461)
T ss_dssp SEEEEECBGGGTTTHHHHHHHHHHHH--SS-----SCCEEEECCBCCEEETTBCCCGGGTCCCBHHHHHTT
T ss_pred CceEEeccCccCchHHHHHHHHHHHh--cC-----CCCCcEEEEeeEEEECCeEccccCCCccChhHHhhh
Confidence 89999999998877877666555554 23 35654 66779999888775 999999999998753
No 19
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=97.09 E-value=0.00022 Score=59.63 Aligned_cols=61 Identities=21% Similarity=0.278 Sum_probs=49.3
Q ss_pred cceEEeecchhHHHHHHHHHHHHHHHHhcCCCCCCCcccccccc-ceeecCeeee-cCCCceeCCCceee
Q psy1520 35 PVDIYIGGKEHAVLHLYYARFIAHFLHAQGKTPAREPFKRLLVQ-GMIMGQTYRE-KTSGKYLKPDEVFT 102 (107)
Q Consensus 35 PVD~YIGGiEHAilHLLYaRF~~K~L~D~G~v~~~EPF~~Ll~Q-GMV~~~~~k~-ks~Gn~v~p~ev~~ 102 (107)
++|+-.||+++.--|.-.-...+.++. ..||.+...| |||..++.|| ||+||+|+|.|++.
T Consensus 223 ~~dih~gG~Dl~FpHheneiaqs~a~~-------g~p~~~~w~H~g~v~~~G~KMSKSlGN~i~~~dll~ 285 (462)
T 3tqo_A 223 PFDIHGGGLDLKFPHHENEIAQSEAGE-------EKPFVKLWMHAGLLEINKEKMSKSLGNIISIREALK 285 (462)
T ss_dssp SEEEEEEEGGGTTTHHHHHHHHHHHHH-------SSCCEEEEEEECCEEETTEECCTTTTCCCBHHHHHH
T ss_pred CeEEEccccccccHHHHhHHHHHHHHc-------CCCcceEEEEccEEecCCcCccccCCCcccHHHHHh
Confidence 799999999999888766666666554 2499988655 8888888875 99999999999865
No 20
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=96.48 E-value=0.00066 Score=56.53 Aligned_cols=58 Identities=19% Similarity=0.316 Sum_probs=40.0
Q ss_pred EEeecchhHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccee-ec-Ce--ee-ecCCCceeCCCceee
Q psy1520 38 IYIGGKEHAVLHLYYARFIAHFLHAQGKTPAREPFKRLLVQGMI-MG-QT--YR-EKTSGKYLKPDEVFT 102 (107)
Q Consensus 38 ~YIGGiEHAilHLLYaRF~~K~L~D~G~v~~~EPF~~Ll~QGMV-~~-~~--~k-~ks~Gn~v~p~ev~~ 102 (107)
+||.|.+|. +| ..| +..++..+|+.+ |--..+..||| ++ ++ .| |||+||+|+|+|++.
T Consensus 239 Iyv~G~dq~-~~--f~~-l~~~l~~lG~~~---~~~~h~~~g~V~l~~dG~~~KMSKr~Gn~v~l~dll~ 301 (464)
T 3fnr_A 239 INIWGADHH-GY--IPR-MKAAMEFLGFDS---NNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVD 301 (464)
T ss_dssp EEEEEGGGG-GG--HHH-HHHHHHTTTCCG---GGEEEEEECCEEEEETTEECCC---CCSSCBHHHHHH
T ss_pred EEEecCcHH-HH--HHH-HHHHHHHcCCCc---cceEEEEeeeEEecCCCcccCCcCcCCCCCCHHHHHh
Confidence 899999998 55 445 458889999743 21256889999 32 22 45 499999999999864
No 21
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=95.37 E-value=0.0029 Score=52.46 Aligned_cols=62 Identities=19% Similarity=0.197 Sum_probs=35.1
Q ss_pred ccceEEeecchhHHHHH--HHHHHHHHHHHhcCCCCCCCccccccccceeecC--eee-ecCCCceeCCCceee
Q psy1520 34 LPVDIYIGGKEHAVLHL--YYARFIAHFLHAQGKTPAREPFKRLLVQGMIMGQ--TYR-EKTSGKYLKPDEVFT 102 (107)
Q Consensus 34 mPVD~YIGGiEHAilHL--LYaRF~~K~L~D~G~v~~~EPF~~Ll~QGMV~~~--~~k-~ks~Gn~v~p~ev~~ 102 (107)
+.|++.++|++|..-|. -+..-+. +.-+|. +|+ ..+..|||+.+ +.| |||+||+|+++++..
T Consensus 229 l~~~vd~~G~Dh~~~h~s~~~~~~i~--~~alG~----~~p-~~~h~~~i~~~g~g~KmSKs~Gn~i~~~~~~~ 295 (523)
T 1irx_A 229 FGVDFEPAGKDHLVAGSSYDTGKEII--KEVYGK----EAP-LSLMYEFVGIKGQKGKMSGSKGNVILLSDLYE 295 (523)
T ss_dssp SCCCBCCEEHHHHSTTSHHHHHHHHH--HHHHCC----CCC-BCCEECCEEESCC---------CCCCHHHHHT
T ss_pred cCCCCcCCCcCccCCCcchhhHHHHH--HHHhCC----CCC-eEEEEEEEEeCCCCCCCCCcCCCCCCHHHHHH
Confidence 34566699999998662 1112222 123454 333 67888999987 566 599999999988764
No 22
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=93.05 E-value=0.0075 Score=50.99 Aligned_cols=61 Identities=18% Similarity=0.132 Sum_probs=36.8
Q ss_pred EEeecchhHHHHHHHHHHHHHHHHhcCCCCCCCccccccccceeecCeeee-cCCCceeCCCceeec
Q psy1520 38 IYIGGKEHAVLHLYYARFIAHFLHAQGKTPAREPFKRLLVQGMIMGQTYRE-KTSGKYLKPDEVFTK 103 (107)
Q Consensus 38 ~YIGGiEHAilHLLYaRF~~K~L~D~G~v~~~EPF~~Ll~QGMV~~~~~k~-ks~Gn~v~p~ev~~~ 103 (107)
+||.|.+|. +| .++ ...++..+|+ +.....-.-+..|||+.++.|| ||+||+|+++|++..
T Consensus 350 iyV~g~~h~-~~--~~~-~~~~~~alG~-~~~~~~~~H~~~g~v~~~g~KMSKr~Gn~v~l~dll~~ 411 (592)
T 1iq0_A 350 INVVDVRQS-HP--QAL-VRAALALAGY-PALAEKAHHLAYETVLLEGRQMSGRKGLAVSVDEVLEE 411 (592)
T ss_dssp EEEEESSSC-CC--HHH-HHHHHHHTTC-HHHHTTEEEEEECCEEETTBCSCC----CCBHHHHHHH
T ss_pred EEEEeccHH-HH--HHH-HHHHHHHcCC-CCCCCcEEEEEeeEEEcCCCcccCCCCCccCHHHHHHH
Confidence 689999887 44 233 3455666775 1101112346789999887775 999999999998754
No 23
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=92.95 E-value=0.036 Score=47.42 Aligned_cols=61 Identities=18% Similarity=0.046 Sum_probs=42.6
Q ss_pred EEeecchhHHHHHHHHHHHHHHHHhcCCCCCCCccccccccceeecCeeee-cCCC--ceeCCCceeec
Q psy1520 38 IYIGGKEHAVLHLYYARFIAHFLHAQGKTPAREPFKRLLVQGMIMGQTYRE-KTSG--KYLKPDEVFTK 103 (107)
Q Consensus 38 ~YIGGiEHAilHLLYaRF~~K~L~D~G~v~~~EPF~~Ll~QGMV~~~~~k~-ks~G--n~v~p~ev~~~ 103 (107)
+||.|.+|. +| ..|. ..+|..+|+-...+ .-..+..|||+.+..|| |++| |+|+++|++..
T Consensus 380 IyV~g~~q~-~~--~~~l-~~~l~~lG~~~~~~-~~~h~~~g~V~~~~~KMSkr~G~~n~v~l~dLl~e 443 (629)
T 2zue_A 380 INVIGAEQK-HP--QLAI-KYALQLLGFEDAAA-NLYHLAYEHVERPEGKFSGRKGTWVGFTVDEVIQE 443 (629)
T ss_dssp EEEEEGGGH-HH--HHHH-HHHHHHTTCHHHHH-TEEEEEECCEEBTTBCCCTTTTTTTTCBHHHHHHH
T ss_pred EEEEeCcHh-hH--HHHH-HHHHHHcCCCCCCC-eEEEEEeeeEEcCCCcccCCCCCCCeeeHHHHHHH
Confidence 799999996 44 3443 46677778621000 12357789999887775 8999 99999998753
No 24
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=85.63 E-value=0.54 Score=36.72 Aligned_cols=57 Identities=25% Similarity=0.366 Sum_probs=41.0
Q ss_pred ccceEEeecchhHHHHHHHHHHHHHHHHhcCCCCCCCccccccccceeecC-eeee-cCCCceeCCCc
Q psy1520 34 LPVDIYIGGKEHAVLHLYYARFIAHFLHAQGKTPAREPFKRLLVQGMIMGQ-TYRE-KTSGKYLKPDE 99 (107)
Q Consensus 34 mPVD~YIGGiEHAilHLLYaRF~~K~L~D~G~v~~~EPF~~Ll~QGMV~~~-~~k~-ks~Gn~v~p~e 99 (107)
+.+|+-+||.+|. -|+.-+|=+.+-+ |. .+|+ .++..+|.+. +-|| ||.||.|..+|
T Consensus 169 ~~~~~v~~G~DQ~-~~~~l~rdla~~~---~~---~~p~--~l~~pll~~l~G~KMSKS~~n~I~l~d 227 (323)
T 2cyb_A 169 LGVDLAVGGIDQR-KIHMLARENLPRL---GY---SSPV--CLHTPILVGLDGQKMSSSKGNYISVRD 227 (323)
T ss_dssp TTCSEEEEEGGGH-HHHHHHHHHGGGG---TC---CCCE--EEEECCCBCTTSSBCCTTTTCSCBTTC
T ss_pred cCCCEEEechhhH-HHHHHHHHHHHhc---CC---CCce--EEecCcccCCCCCcccCCcCceeCCCC
Confidence 5899999999997 6888787766543 32 3665 5667777653 3454 99999887765
No 25
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=84.95 E-value=0.43 Score=40.80 Aligned_cols=56 Identities=23% Similarity=0.349 Sum_probs=38.2
Q ss_pred EEeecchhHHHHHHHHHHHHHHHHhcCCCCCCCccccccccceeecCeeeecCCCceeCCCceee
Q psy1520 38 IYIGGKEHAVLHLYYARFIAHFLHAQGKTPAREPFKRLLVQGMIMGQTYREKTSGKYLKPDEVFT 102 (107)
Q Consensus 38 ~YIGGiEHAilHLLYaRF~~K~L~D~G~v~~~EPF~~Ll~QGMV~~~~~k~ks~Gn~v~p~ev~~ 102 (107)
+||-|.+|. +| .+|.+ .+++-+|. +..+ .-..+.-|||.+ .|++.||+|..+|++.
T Consensus 368 IyV~g~~q~-~~--f~q~~-~~~~~lG~-~~~~-~~~Hv~fg~v~k---MSkR~G~~v~L~dLld 423 (607)
T 1f7u_A 368 IYVIASQQD-LH--AAQFF-EILKQMGF-EWAK-DLQHVNFGMVQG---MSTRKGTVVFLDNILE 423 (607)
T ss_dssp EEECCGGGH-HH--HHHHH-HHHHHTTC-GGGG-GEEEECCCCEES---CCGGGTCCCBHHHHHH
T ss_pred EEEEcChHh-hH--HHHHH-HHHHHcCC-CcCc-EEEEeccccccc---ccCCCCCcccHHHHHH
Confidence 788999996 56 46765 57788886 2111 122244588874 4589999999988764
No 26
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=61.83 E-value=5.4 Score=31.89 Aligned_cols=55 Identities=20% Similarity=0.257 Sum_probs=32.9
Q ss_pred ccceEEeecchhHHHHHHHHHHHHHHHHhcCCCCCCCccccccccceeecC-eeee-cCCCc-eeCC
Q psy1520 34 LPVDIYIGGKEHAVLHLYYARFIAHFLHAQGKTPAREPFKRLLVQGMIMGQ-TYRE-KTSGK-YLKP 97 (107)
Q Consensus 34 mPVD~YIGGiEHAilHLLYaRF~~K~L~D~G~v~~~EPF~~Ll~QGMV~~~-~~k~-ks~Gn-~v~p 97 (107)
+-+|+-+||.+|- .|+.-+|=+.+-+ | ..+|+. ++..||.+- +-|| ||.|| .|.-
T Consensus 177 ~~a~~v~~G~DQ~-~~~~l~rdl~~r~---~---~~~p~~--l~~pll~gldG~KMSKS~~ns~I~L 234 (372)
T 1n3l_A 177 LKVDAQFGGIDQR-KIFTFAEKYLPAL---G---YSKRVH--LMNPMVPGLTGSKMSSSEEESKIDL 234 (372)
T ss_dssp TTCSEEEEEGGGH-HHHHHHHHHGGGG---T---CCCCEE--EEECCCCCSSCC-------CCSCBT
T ss_pred hcCCEEEcChhHH-HHHHHHHHHHHHc---C---CCCCEE--EecCccCCCCcccccCCCCCCeEec
Confidence 3578999999997 8988888776544 4 356763 345676653 2454 88888 4543
No 27
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=61.74 E-value=4 Score=25.36 Aligned_cols=46 Identities=11% Similarity=0.128 Sum_probs=33.5
Q ss_pred HHHHHHhcCCCCCCCccccccccceeecCeeeecCCCceeCCCcee
Q psy1520 56 IAHFLHAQGKTPAREPFKRLLVQGMIMGQTYREKTSGKYLKPDEVF 101 (107)
Q Consensus 56 ~~K~L~D~G~v~~~EPF~~Ll~QGMV~~~~~k~ks~Gn~v~p~ev~ 101 (107)
..++|...|+..+..-.++|+.+|-|.-++-.....+.-|.+.+.+
T Consensus 23 Ldk~L~~~g~~~SR~~a~~lI~~G~V~VNG~~v~~~~~~v~~gd~I 68 (79)
T 1p9k_A 23 LCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTV 68 (79)
T ss_dssp HHHHHHHHTSCSSSSTTSHHHHHHHHEETTBCCCCSSCCCCSSEEE
T ss_pred HHHHHHHCCCCCCHHHHHHHHHCCEEEECCEEecCCCCCCCCCCEE
Confidence 4788888999988888999999999886554333344456666644
No 28
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=58.94 E-value=10 Score=29.64 Aligned_cols=56 Identities=21% Similarity=0.185 Sum_probs=39.9
Q ss_pred cceEEeecchhHHHHHHHHHHHHHHHHhcCCCCCCCccccccccceeec-Ceeee-cCCCceeCCCc
Q psy1520 35 PVDIYIGGKEHAVLHLYYARFIAHFLHAQGKTPAREPFKRLLVQGMIMG-QTYRE-KTSGKYLKPDE 99 (107)
Q Consensus 35 PVD~YIGGiEHAilHLLYaRF~~K~L~D~G~v~~~EPF~~Ll~QGMV~~-~~~k~-ks~Gn~v~p~e 99 (107)
++|+-+||+++- .|+.-+|=+.+-+.. .+||.- +.-++.+ ++-|| ||.||.|.-+|
T Consensus 191 ~~~v~~gG~DQ~-~~i~l~rdla~r~n~------~~~~~l--~~pll~gldG~KMSKS~~n~I~L~d 248 (322)
T 2yxn_A 191 GVVLCIGGSDQW-GNITSGIDLTRRLHQ------NQVFGL--TVPLITKADGTKFGKTEGGAVWLDP 248 (322)
T ss_dssp CEEEEEECTTCH-HHHHHHHHHHHHHHC------CCCEEE--ECCCCBCTTSCBTTEETTEECBSST
T ss_pred CceEEecCchhH-HHHHHHHHHHHHhCC------CCceee--ccCccCCCCcccccCCCCCeeeccC
Confidence 799999999998 899999988877653 345432 4446655 33465 89998665444
No 29
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=54.66 E-value=8.3 Score=31.03 Aligned_cols=55 Identities=18% Similarity=0.181 Sum_probs=32.5
Q ss_pred ccceEEeecchhHHHHHHHHHHHHHHHHhcCCCCCCCccccccccceeecCe--ee-ecCCCce-eCC
Q psy1520 34 LPVDIYIGGKEHAVLHLYYARFIAHFLHAQGKTPAREPFKRLLVQGMIMGQT--YR-EKTSGKY-LKP 97 (107)
Q Consensus 34 mPVD~YIGGiEHAilHLLYaRF~~K~L~D~G~v~~~EPF~~Ll~QGMV~~~~--~k-~ks~Gn~-v~p 97 (107)
+.+|+-+||.+|- .|+.-+|=+.+.+ | ..+|+.- +.-||.+.+ -| |||.||. |.-
T Consensus 181 ~~~~~v~~G~DQ~-~~~~l~rdl~~r~---~---~~~p~~l--~~pll~gl~~G~KMSKS~~ns~I~L 239 (394)
T 2dlc_X 181 LDVDCQFGGVDQR-KIFVLAEENLPSL---G---YKKRAHL--MNPMVPGLAQGGKMSASDPNSKIDL 239 (394)
T ss_dssp TTCSEEEEEGGGH-HHHHHHHHHGGGG---T---CCCCEEE--EECCCCCCC----------CCSCBT
T ss_pred hCCCEEecCccHH-HHHHHHHHHHHHc---C---CCCCEEE--ecccccCCCCCCcCCCCCCCCEEec
Confidence 5789999999997 7988888766544 4 3466553 345666533 45 4888884 543
No 30
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=53.74 E-value=11 Score=30.01 Aligned_cols=56 Identities=13% Similarity=0.196 Sum_probs=31.7
Q ss_pred cceEEeecchhHHHHHHHHHHHHHHHHhcCCCCCCCccccccccceeecC-eeee-cCCCceeCCCc
Q psy1520 35 PVDIYIGGKEHAVLHLYYARFIAHFLHAQGKTPAREPFKRLLVQGMIMGQ-TYRE-KTSGKYLKPDE 99 (107)
Q Consensus 35 PVD~YIGGiEHAilHLLYaRF~~K~L~D~G~v~~~EPF~~Ll~QGMV~~~-~~k~-ks~Gn~v~p~e 99 (107)
.+|+-+||.++- .|+.-+|=+.+-+.. .+||. ++.-++.+. +-|| ||.||.|.-+|
T Consensus 210 ~~~i~p~G~DQ~-~~i~l~rdla~r~n~------~~~~~--l~~pll~~ldG~KMSKS~~naI~L~d 267 (356)
T 2pid_A 210 GCRVQLGGSDQL-GNIMSGYEFINKLTG------EDVFG--ITVPLITSTTGAKLGKSAGNAVWLNR 267 (356)
T ss_dssp CCCEEEEEGGGH-HHHHHHHHHHHHHSS------CCCEE--EEECCCC-------------CCBSST
T ss_pred CCcEEeccHHHH-HHHHHHHHHHHHhCC------CCccc--cccccccCCCcccccCCCCCeeeccC
Confidence 799999999998 899999988876542 34543 344555442 2454 89898665443
No 31
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=49.83 E-value=26 Score=27.59 Aligned_cols=63 Identities=21% Similarity=0.174 Sum_probs=39.1
Q ss_pred ccceEEeecchhHHHHHHHHHHHHHHHHh-cCCCCCCCcccccccc-ceeecC-e-eee-cCCCceeCCC
Q psy1520 34 LPVDIYIGGKEHAVLHLYYARFIAHFLHA-QGKTPAREPFKRLLVQ-GMIMGQ-T-YRE-KTSGKYLKPD 98 (107)
Q Consensus 34 mPVD~YIGGiEHAilHLLYaRF~~K~L~D-~G~v~~~EPF~~Ll~Q-GMV~~~-~-~k~-ks~Gn~v~p~ 98 (107)
.-+|+-+||.+|- .|+.-+|=+.+-+.. .|- -+.+|-.-+... -+|.+- + -|| ||.||.|.-+
T Consensus 140 ~~~~lvp~G~DQ~-~~i~l~rdla~r~n~~~g~-~f~~P~~~~~~~~p~l~gldG~~KMSKS~~n~I~L~ 207 (337)
T 2el7_A 140 YKADTVPVGEDQV-QHIELTREIARRFNHLFGE-TFPEPQALLNPEAPRVPGIDGKAKMSKSLGNTIGLL 207 (337)
T ss_dssp TTCCEEECCGGGC-HHHHHHHHHHHHHHHHHSS-CCCCCEEECCTTSCCCBCTTSSSBCCTTTTCCCBSS
T ss_pred hCCcEEEcccchH-HHHHHHHHHHHHHHhhcCc-ccCCCeeecccccccccCCCCccccCCCCCCeeeCc
Confidence 3589999999998 799988877766543 351 134452222222 355542 2 454 9999966543
No 32
>2ytu_A Friend leukemia integration 1 transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.83 E-value=13 Score=26.20 Aligned_cols=46 Identities=17% Similarity=0.192 Sum_probs=36.6
Q ss_pred ccccccccCCCCCC--CCCChhhhcccccceEEeecchhHHHHHHHHH
Q psy1520 9 QIKTKTKSRDINAE--VSFNTDKAQDWLPVDIYIGGKEHAVLHLYYAR 54 (107)
Q Consensus 9 ~~~~~~~~dp~n~~--~~fd~~~~~~WmPVD~YIGGiEHAilHLLYaR 54 (107)
+..-.+|+|.+|.- ..|+.+...-|+|.|-...-.||..-+|.++.
T Consensus 7 ~~~~~~~~~~~~~~~pp~~~~e~~rl~IP~DP~~WS~~~V~~WL~Wa~ 54 (128)
T 2ytu_A 7 GMNYNSYMDEKNGPPPPNMTTNERRVIVPADPTLWTQEHVRQWLEWAI 54 (128)
T ss_dssp CCCCCCCCCCCCCSSSCSCCCCSSCCSCCSCGGGCCTTHHHHHHHHHH
T ss_pred CcccchhhhhccCCCCCchhhhhhhccCCcchhhCCHHHHHHHHHHHH
Confidence 44456788888743 33888888999999999999999998876654
No 33
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=46.55 E-value=18 Score=29.66 Aligned_cols=57 Identities=18% Similarity=0.389 Sum_probs=39.4
Q ss_pred ccceEEeecchhHHHHHHHHHHHHHHHHhcCCCCCCCccccccccceeecCe--eee-cCCCceeCCCc
Q psy1520 34 LPVDIYIGGKEHAVLHLYYARFIAHFLHAQGKTPAREPFKRLLVQGMIMGQT--YRE-KTSGKYLKPDE 99 (107)
Q Consensus 34 mPVD~YIGGiEHAilHLLYaRF~~K~L~D~G~v~~~EPF~~Ll~QGMV~~~~--~k~-ks~Gn~v~p~e 99 (107)
+.+|+-+||.++- .|+.-+|=+.+-+ |. ..|| .++.-++.+.. -|| ||.||.|.-+|
T Consensus 186 l~~~l~~gG~DQ~-~ni~l~rdlarr~---~~---~~~~--~lt~pll~gldG~~KMSKS~~n~I~L~d 245 (432)
T 1h3f_A 186 IRADVEMGGTDQR-FNLLVGREVQRAY---GQ---SPQV--CFLMPLLVGLDGREKMSKSLDNYIGLTE 245 (432)
T ss_dssp HTCSEEEEEGGGH-HHHHHHHHHHHHT---TC---CCCE--EEEECCCBCTTSSSBCCGGGTCCCBTTS
T ss_pred cCccEEEechHHH-HHHHHHHHHHHHh---CC---CCce--EeecccccCCCCccccCcCCCCeeCCCC
Confidence 3589999999998 8999999877654 32 2233 45666776532 254 99999766544
No 34
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=41.37 E-value=39 Score=26.59 Aligned_cols=62 Identities=18% Similarity=0.151 Sum_probs=38.8
Q ss_pred cceEEeecchhHHHHHHHHHHHHHHHHhc-CCCCCCCccccccccceeecC-eeee-cCCCceeCCC
Q psy1520 35 PVDIYIGGKEHAVLHLYYARFIAHFLHAQ-GKTPAREPFKRLLVQGMIMGQ-TYRE-KTSGKYLKPD 98 (107)
Q Consensus 35 PVD~YIGGiEHAilHLLYaRF~~K~L~D~-G~v~~~EPF~~Ll~QGMV~~~-~~k~-ks~Gn~v~p~ 98 (107)
-+|+-+||.+|- .|+.-+|=+.+-+... |- -+.+|=.-+.+.-+|.+- +-|| ||.||.|.-+
T Consensus 153 ~~~~vpvG~DQ~-~hi~l~rdia~r~n~~yg~-~f~~P~~~~~~~~~l~gldG~KMSKS~~n~I~L~ 217 (340)
T 2g36_A 153 KAEGVPVGEDQV-YHIELTREIARRFNYLYDE-VFPEPEAILSRVPKLPGTDGRKMSKSYGNIINLE 217 (340)
T ss_dssp TCSEEEECGGGH-HHHHHHHHHHHHHHHHSCC-CCCCCEEEECCSCCCCCTTSSCCCGGGTCCCBTT
T ss_pred CCCEEEcccchH-HHHHHHHHHHHHhhhhccc-ccCCchhhhccccccCCCCccccCCCCCCeEeee
Confidence 589999999998 7999999887766543 51 123442222223445442 2364 8989876543
No 35
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=40.45 E-value=33 Score=27.92 Aligned_cols=57 Identities=12% Similarity=0.149 Sum_probs=38.5
Q ss_pred cceEEeecchhHHHHHHHHHHHHHHHHhcCCCCCCCccccccccceeecC-eeee-cCCCceeCCCc
Q psy1520 35 PVDIYIGGKEHAVLHLYYARFIAHFLHAQGKTPAREPFKRLLVQGMIMGQ-TYRE-KTSGKYLKPDE 99 (107)
Q Consensus 35 PVD~YIGGiEHAilHLLYaRF~~K~L~D~G~v~~~EPF~~Ll~QGMV~~~-~~k~-ks~Gn~v~p~e 99 (107)
.+|+-+||.++- .|+.-+|=+.+-+. + ..+||. ++.-++.+. +-|| ||.||.|.-++
T Consensus 186 ~~~i~~gG~DQ~-~ni~~grdla~r~~--~---~~~~~~--l~~pll~~ldG~KMSKS~~naI~L~d 244 (420)
T 1jil_A 186 NCKIQVGGSDQW-GNITSGIELMRRMY--G---QTDAYG--LTIPLVTKSDGKKFGKSESGAVWLDA 244 (420)
T ss_dssp CEEEEEEEGGGH-HHHHHHHHHHHHHH--C---CCCCEE--EEECCCBCTTSCBTTBCSSSBCBSST
T ss_pred CCcEEeccHHHH-HHHHHHHHHHHHhc--C---CCCeeE--eecccccCCccccccCCCCCeEecCC
Confidence 799999999998 89999998887661 1 134443 334455442 2465 99999665443
No 36
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=39.92 E-value=31 Score=28.22 Aligned_cols=57 Identities=16% Similarity=0.145 Sum_probs=37.7
Q ss_pred cceEEeecchhHHHHHHHHHHHHHHHHhcCCCCCCCccccccccceeecC-eeee-cCCCceeCCCc
Q psy1520 35 PVDIYIGGKEHAVLHLYYARFIAHFLHAQGKTPAREPFKRLLVQGMIMGQ-TYRE-KTSGKYLKPDE 99 (107)
Q Consensus 35 PVD~YIGGiEHAilHLLYaRF~~K~L~D~G~v~~~EPF~~Ll~QGMV~~~-~~k~-ks~Gn~v~p~e 99 (107)
.+|+-+||.++- .|+.-+|=+.+-+. + ..+||. ++.-++.+. +-|| ||.||.|.-++
T Consensus 185 ~~~i~~gG~DQ~-~ni~lgrdlarr~~--~---~~~~~~--lt~pll~~ldG~KMSKS~~naI~L~d 243 (419)
T 2ts1_A 185 GCRLQIGGSDQW-GNITAGLELIRKTK--G---EARAFG--LTIPLVTKADGTKFGKTESGTIWLDK 243 (419)
T ss_dssp CEEEEEEEGGGH-HHHHHHHHHHHHHH--C-----CCEE--EEECCCCCTTSCCTTCCSSCCCBSST
T ss_pred CCcEEeccHHHH-HHHHHHHHHHHHhc--C---CCCeee--cccccccCCCcccccCCCCCeEecCC
Confidence 799999999998 89999998887661 1 134442 334455442 2465 89999665443
No 37
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=39.69 E-value=47 Score=26.82 Aligned_cols=62 Identities=16% Similarity=0.165 Sum_probs=41.2
Q ss_pred cceEEeecchhHHHHHHHHHHHHHHHHhcCC--------CC---CCCccccccccceeecC-eeee-cCCCceeCCCc
Q psy1520 35 PVDIYIGGKEHAVLHLYYARFIAHFLHAQGK--------TP---AREPFKRLLVQGMIMGQ-TYRE-KTSGKYLKPDE 99 (107)
Q Consensus 35 PVD~YIGGiEHAilHLLYaRF~~K~L~D~G~--------v~---~~EPF~~Ll~QGMV~~~-~~k~-ks~Gn~v~p~e 99 (107)
.+|+-+||.++- .|+.-.|=+.+-++.... +| ..+|| .++.-+|.+. +-|| ||.||.|.-++
T Consensus 232 ~~~i~~gG~DQ~-~ni~~grdlarrfn~~~~~~~~~~~~~p~l~~~~~~--~l~~pll~~ldG~KMSKS~~naI~L~d 306 (392)
T 1y42_X 232 GVQMQIGGSDQY-GNIISGLEVVKAARESEPDPQERKYVTPKTALDECV--GFTVPLLTDSSGAKFGKSAGNAIWLDP 306 (392)
T ss_dssp CEEEEEECTTCH-HHHHHHHHHHHHHHHHCCCHHHHHHHSCCSGGGSCE--EEECCCCBCTTCCBTTBCSSSBCBSST
T ss_pred CccEEecCcchH-hHHHHHHHHHHHHhhhccccccccccccccccCCcc--ccccccCcCCchhhccCCCCCeeeccC
Confidence 599999999995 899999888877665431 11 13443 2456666653 3465 89998665443
No 38
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=39.56 E-value=19 Score=27.92 Aligned_cols=51 Identities=20% Similarity=0.316 Sum_probs=33.5
Q ss_pred cceEEeecchhHHHHHHHHHHHHHHHHhcCCCCCCCccccccccceeecCe--eee-cCCCceeCCC
Q psy1520 35 PVDIYIGGKEHAVLHLYYARFIAHFLHAQGKTPAREPFKRLLVQGMIMGQT--YRE-KTSGKYLKPD 98 (107)
Q Consensus 35 PVD~YIGGiEHAilHLLYaRF~~K~L~D~G~v~~~EPF~~Ll~QGMV~~~~--~k~-ks~Gn~v~p~ 98 (107)
-+|+-+||.+|- .|+..+|=+.. .+|+. ++.-+|.+-. -|| ||.||.|.-+
T Consensus 163 ~~~~v~~G~DQ~-~~~~l~R~i~~----------~~~~~--~~~~~l~~l~G~~KMSKS~~~~I~L~ 216 (314)
T 2zp1_A 163 GVDVAVGGMEQR-KIHMLARELLP----------KKVVC--IHNPVLTGLDGEGKMSSSKGNFIAVD 216 (314)
T ss_dssp TCSEEEEEGGGH-HHHHHHHHHSS----------SCCEE--EEECCCBCTTSSSBCCTTTTCSCBTT
T ss_pred CCCEEEcChhHH-HHHHHHHHhcC----------CCcEE--eeccccccCCcccccCCCCcceecCC
Confidence 589999999998 67765553221 56765 4555666643 354 8888866543
No 39
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=38.97 E-value=39 Score=27.81 Aligned_cols=56 Identities=14% Similarity=0.106 Sum_probs=38.0
Q ss_pred cceEEeecchhHHHHHHHHHHHHHHHHhcCCCCCCCccccccccceeecC-eeee-cCCCc-eeCCCc
Q psy1520 35 PVDIYIGGKEHAVLHLYYARFIAHFLHAQGKTPAREPFKRLLVQGMIMGQ-TYRE-KTSGK-YLKPDE 99 (107)
Q Consensus 35 PVD~YIGGiEHAilHLLYaRF~~K~L~D~G~v~~~EPF~~Ll~QGMV~~~-~~k~-ks~Gn-~v~p~e 99 (107)
.+|+-+||.++- .|+.-+|=+.+-+.. .+||. ++.-++.+. +-|| ||.|| .|.-++
T Consensus 187 ~~~i~~gG~DQ~-~ni~lgrdlarr~~~------~~~~~--l~~plL~~ldG~KMSKS~~nsaI~L~d 245 (432)
T 2jan_A 187 GCTLQIGGADQW-GNIIAGVRLVRQKLG------ATVHA--LTVPLVTAADGTKFGKSTGGGSLWLDP 245 (432)
T ss_dssp CCCEEEECSTTH-HHHHHHHHHHHHHHC------CCCEE--EECCCCBCTTSCBTTBCSSSCBCBSST
T ss_pred CCcEEeccHHHH-HHHHHHHHHHHHhCC------CCccc--cccccccCCCcCcCCCCCCCCeEEccC
Confidence 799999999998 899999988877653 23432 233444442 2465 99999 665443
No 40
>1sxe_A Transcriptional regulator ERG; alpha helical, signaling protein; NMR {Homo sapiens} SCOP: a.60.1.1
Probab=38.52 E-value=13 Score=24.77 Aligned_cols=30 Identities=20% Similarity=0.262 Sum_probs=26.5
Q ss_pred CChhhhcccccceEEeecchhHHHHHHHHH
Q psy1520 25 FNTDKAQDWLPVDIYIGGKEHAVLHLYYAR 54 (107)
Q Consensus 25 fd~~~~~~WmPVD~YIGGiEHAilHLLYaR 54 (107)
|+++..+-++|.|=...-.||..-+|.++.
T Consensus 14 ~~~e~~rl~ip~DP~~Ws~~~V~~WL~W~~ 43 (97)
T 1sxe_A 14 MTTNERRVIVPADPTLWSTDHVRQWLEWAV 43 (97)
T ss_dssp CSTTTTSSSSCSSTTSCCHHHHHHHHHHHH
T ss_pred hHhhhhhhcCCcchhccCHHHHHHHHHHHH
Confidence 788888999999999999999998877664
No 41
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=37.94 E-value=12 Score=22.97 Aligned_cols=10 Identities=30% Similarity=0.428 Sum_probs=8.5
Q ss_pred ceEEeecchh
Q psy1520 36 VDIYIGGKEH 45 (107)
Q Consensus 36 VD~YIGGiEH 45 (107)
=.+||||.||
T Consensus 92 ~~ifvg~L~h 101 (101)
T 2hvz_A 92 EVLFNGPLEH 101 (101)
T ss_dssp SCCCSCCCCC
T ss_pred CceecCCCCC
Confidence 3489999998
No 42
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=36.87 E-value=9.5 Score=24.80 Aligned_cols=29 Identities=28% Similarity=0.524 Sum_probs=21.1
Q ss_pred CccccccccceeecCeeeecCCCc--eeCCCcee
Q psy1520 70 EPFKRLLVQGMIMGQTYREKTSGK--YLKPDEVF 101 (107)
Q Consensus 70 EPF~~Ll~QGMV~~~~~k~ks~Gn--~v~p~ev~ 101 (107)
+=.+.|..+|++.| -+..+|+ ||+|+|+.
T Consensus 40 ~RI~~Le~~g~ltG---ViDDRGKfIyIs~eE~~ 70 (72)
T 1wi9_A 40 NRIQDLLTEGTLTG---VIDDRGKFIYITPSGPS 70 (72)
T ss_dssp HHHHHHHHHSSSCE---EECTTCCEEECCCSSCC
T ss_pred HHHHHHHHCCCeEE---EEeCCCCEEEecHHHhh
Confidence 44677889999987 3456898 66777764
No 43
>2cqj_A BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.85 E-value=16 Score=22.61 Aligned_cols=42 Identities=7% Similarity=-0.041 Sum_probs=31.9
Q ss_pred HHHHHHhcCCCCCCCccccccccceeecCeeeecCCCceeCC
Q psy1520 56 IAHFLHAQGKTPAREPFKRLLVQGMIMGQTYREKTSGKYLKP 97 (107)
Q Consensus 56 ~~K~L~D~G~v~~~EPF~~Ll~QGMV~~~~~k~ks~Gn~v~p 97 (107)
..++|...|+.++.+=-++|+.||-|.-.+.+...-|--|+|
T Consensus 10 LD~~l~~~gla~SR~~A~~lI~~G~V~Vng~~v~kps~~V~~ 51 (71)
T 2cqj_A 10 LPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTR 51 (71)
T ss_dssp HHHHHHHTTCSSSHHHHHHHHHTTCEEETTBCCCCTTCEEEH
T ss_pred HHHHHHHhCCcCCHHHHHHHHHCCcEEECCEEECCCCCCCCC
Confidence 357889999999999999999999998655443334555665
No 44
>2inc_A Toluene, O-xylene monooxygenase oxygenase subunit; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: a.25.1.2 PDB: 2ind_A* 1t0q_A 1t0r_A 1t0s_A 3n1z_A* 3rnf_A* 3n20_A* 3rnc_A 3rn9_A* 3n1x_A 3rne_A 2rdb_A* 3n1y_A* 3rnb_A 3rng_A 3rna_A
Probab=34.51 E-value=3 Score=35.13 Aligned_cols=47 Identities=13% Similarity=0.155 Sum_probs=32.1
Q ss_pred ccccccCCCCCCCC-CChhh-hcccccceEEeec----chhHHHHHHHHHHHHHHHHhcCCCCC
Q psy1520 11 KTKTKSRDINAEVS-FNTDK-AQDWLPVDIYIGG----KEHAVLHLYYARFIAHFLHAQGKTPA 68 (107)
Q Consensus 11 ~~~~~~dp~n~~~~-fd~~~-~~~WmPVD~YIGG----iEHAilHLLYaRF~~K~L~D~G~v~~ 68 (107)
++-+|||+.+.... -+|++ ++.|.|||+...| .+ +.-+|.++|+.+.
T Consensus 423 ~~y~fcs~~c~~~F~~~Pery~~~~~~~~~~~~g~~~~~~-----------l~~~~~~~~~~~~ 475 (491)
T 2inc_A 423 RLYHFGSEADRWCFQIDPERYKNHTNLVDRFLKGEIQPAD-----------LAGALMYMSLEPG 475 (491)
T ss_dssp EEECCSSHHHHHHHHHSGGGTTTCCCHHHHHHTTCSSSCS-----------HHHHHHHTTCCTT
T ss_pred EEEeecCHHHHHHHHHCHHHHhcccchhhHHhcCCCCCcC-----------HHHHHHHcCCCcc
Confidence 34578888764432 23444 7789999996666 45 5788889998764
No 45
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=31.96 E-value=29 Score=27.60 Aligned_cols=41 Identities=27% Similarity=0.408 Sum_probs=29.9
Q ss_pred cceEEeecchhHHHHHHHHHHHHHHHHhcCCCCCCCccccccccceeecC
Q psy1520 35 PVDIYIGGKEHAVLHLYYARFIAHFLHAQGKTPAREPFKRLLVQGMIMGQ 84 (107)
Q Consensus 35 PVD~YIGGiEHAilHLLYaRF~~K~L~D~G~v~~~EPF~~Ll~QGMV~~~ 84 (107)
-+|+-+||.+|- .|+.-+|=+.+-+ | ..+|+. ++.-+|.+-
T Consensus 177 ~~~~v~~G~DQ~-~~~~l~rdla~r~---~---~~~p~~--l~~~ll~~l 217 (364)
T 2cya_A 177 DLDIALGGMDQR-KAHMLARDVAEKL---G---RKKPVA--IHTPIISSL 217 (364)
T ss_dssp TCSEEEEEGGGH-HHHHHHHHHHTTT---T---CCCCEE--EEECCCBCS
T ss_pred CCCEEeccchHH-HHHHHHHHHHHHc---C---CCCcee--eccceeeCC
Confidence 579999999998 7988888776543 3 347774 556677653
No 46
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=31.82 E-value=77 Score=25.02 Aligned_cols=61 Identities=18% Similarity=0.118 Sum_probs=38.2
Q ss_pred cceEEeecchhHHHHHHHHHHHHHHHHh-cCCCCCCCccccccc-cceeecC-ee-e-ecCCCceeCCC
Q psy1520 35 PVDIYIGGKEHAVLHLYYARFIAHFLHA-QGKTPAREPFKRLLV-QGMIMGQ-TY-R-EKTSGKYLKPD 98 (107)
Q Consensus 35 PVD~YIGGiEHAilHLLYaRF~~K~L~D-~G~v~~~EPF~~Ll~-QGMV~~~-~~-k-~ks~Gn~v~p~ 98 (107)
-+|+-+||.+|- .|+.-+|=+.+-+.. .|- -+.+|- -+++ .-+|.+- +- | |||.||.|.-+
T Consensus 162 ~~~~vpvG~DQ~-~hi~l~rdia~r~n~~yg~-~f~~P~-~~~~~~~~l~~ldG~~KMSKS~~n~I~L~ 227 (351)
T 1yi8_B 162 GATLVPVGDDQL-PMLEQTREIVRRFNALYAP-VLAEPQ-AQLSRVPRLPGLDGQAKMSKSLGNAIALG 227 (351)
T ss_dssp TCSEEEECGGGH-HHHHHHHHHHHHHHHHTCS-CSCCCE-EEECSSCSCCCTTSSSCCCTTTTCCCBTT
T ss_pred CCCEEEecCCcH-HHHHHHHHHHHHHHhhccc-ccCCCe-eeeecCccccCCCCccccCCCCCCeecCC
Confidence 589999999998 799999988776653 351 123441 1222 2344442 22 5 49999966543
No 47
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=31.68 E-value=50 Score=26.41 Aligned_cols=55 Identities=22% Similarity=0.242 Sum_probs=36.8
Q ss_pred cceEEeecchhHHHHHHHHHHHHHHHHhcCCCCCCCccccccccceeec--Ce-eee-cCCC-ceeCC
Q psy1520 35 PVDIYIGGKEHAVLHLYYARFIAHFLHAQGKTPAREPFKRLLVQGMIMG--QT-YRE-KTSG-KYLKP 97 (107)
Q Consensus 35 PVD~YIGGiEHAilHLLYaRF~~K~L~D~G~v~~~EPF~~Ll~QGMV~~--~~-~k~-ks~G-n~v~p 97 (107)
-+|+-.||.++- .|+.-+|=+.+-+... . .|+ +++..||.+ ++ -|| ||.+ |.|.-
T Consensus 200 ~ad~vpgG~DQ~-~~l~l~Rdla~r~~~~---~--~~~--~l~~p~l~gL~dG~~KMSKS~~~~~I~L 259 (373)
T 3vgj_A 200 NVDICQLGIDQR-KVNMLAREYCDIKKIK---K--KPV--ILSHGMLPGLLEGQEKMSKSDENSAIFM 259 (373)
T ss_dssp TCSEECCBGGGH-HHHHHHHHHHHHHTCS---C--CCE--EEEBCCCCCSSTTCCSCCSSSTTCCCBT
T ss_pred CCcEEEcchhhH-HHHHHHHHHHHHhCCC---C--Cce--EEeCCeeecCCCCCCCCcCCCCCCeeec
Confidence 489999999998 8999998777655321 1 243 355667776 23 365 8884 66553
No 48
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=30.19 E-value=55 Score=26.79 Aligned_cols=55 Identities=9% Similarity=-0.023 Sum_probs=34.8
Q ss_pred ceEEeecchhHHHHHHHHHHHHHHHHhcCCCCCCCccccccccceeecCe---eee-cCCCc-eeCCCc
Q psy1520 36 VDIYIGGKEHAVLHLYYARFIAHFLHAQGKTPAREPFKRLLVQGMIMGQT---YRE-KTSGK-YLKPDE 99 (107)
Q Consensus 36 VD~YIGGiEHAilHLLYaRF~~K~L~D~G~v~~~EPF~~Ll~QGMV~~~~---~k~-ks~Gn-~v~p~e 99 (107)
.++-.||+++- .|+.-+|=+.+-+ | ..+|.. ++.-+|.+-. -|| ||.|| .|.-+|
T Consensus 250 ~~lvp~G~DQ~-~~i~l~Rdla~r~---~---~~~p~~--l~~~ll~gLdG~~~KMSKS~~nsaI~L~d 309 (432)
T 2ip1_A 250 PCLIPCAIDQD-PYFRVCRDVADKL---K---YSKPAL--LHSRFFPALQGSTTKMSASDDTTAIFMTD 309 (432)
T ss_dssp CEEEEEEGGGH-HHHHHHHHHHHHH---T---SCCCEE--EEECCCCCTTC--------CGGGCCBTTC
T ss_pred ceEEEeccCcH-HHHHHHHHHHHHh---C---CCCcee--eccccccCCCCCccccCCCCCCCeEeccC
Confidence 56788999998 8988888776654 3 367864 5566776532 465 89888 565443
No 49
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=28.68 E-value=31 Score=24.36 Aligned_cols=54 Identities=19% Similarity=0.319 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCccccccccceeecCeeeecCCCceeCCCcee
Q psy1520 47 VLHLYYARFIAHFLHAQGKTPAREPFKRLLVQGMIMGQTYREKTSGKYLKPDEVF 101 (107)
Q Consensus 47 ilHLLYaRF~~K~L~D~G~v~~~EPF~~Ll~QGMV~~~~~k~ks~Gn~v~p~ev~ 101 (107)
.+-+|=.| .-++|...|+..+..=.++|+.+|-|.-++-+....+--|.|.|++
T Consensus 45 ~~~~le~R-LD~~L~~~g~~~SR~~ar~lI~~G~V~VNG~~v~~ps~~V~~gD~I 98 (159)
T 1c05_A 45 FMILLESR-LDNLVYRLGLARTRRQARQLVTHGHILVDGSRVNIPSYRVKPGQTI 98 (159)
T ss_dssp HHHHHHHB-HHHHHHHTTSCSSHHHHHHHHHTTCEEETTEECCCSSCBCCTTCEE
T ss_pred HHHHHHHH-HHHHHHHcCCcCCHHHHHHHHHCCCEEECCEEeCcCCcEeCCCCEE
Confidence 45555555 5779999999888889999999999986554432334456666643
No 50
>2xzm_D Ribosomal protein S4 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_D
Probab=26.34 E-value=47 Score=24.30 Aligned_cols=49 Identities=12% Similarity=0.027 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCCccccccccceeecCeeeecCCCceeCCCc
Q psy1520 50 LYYARFIAHFLHAQGKTPAREPFKRLLVQGMIMGQTYREKTSGKYLKPDE 99 (107)
Q Consensus 50 LLYaRF~~K~L~D~G~v~~~EPF~~Ll~QGMV~~~~~k~ks~Gn~v~p~e 99 (107)
||=.| ..++|...|+..+..=-..|+.||-|.-.+-....-+--|+|++
T Consensus 104 ~le~R-LD~vL~~~G~a~SR~~Ar~LI~~G~V~VNg~~V~~Ps~~V~~~d 152 (181)
T 2xzm_D 104 LMERR-LQTRVFKLNLANSIHHSRVLIRQRHIKVGKNLVNVPSFMVRTDS 152 (181)
T ss_dssp HHTTB-HHHHHHHTTCSSSTTHHHHHTTTTCCEETTEECCCSCCBCCSTT
T ss_pred hhccc-hhHHHHhccccCCHHHHHHHHHCCEEEECCEEECCCCcCCCCCC
Confidence 33334 57889999999999999999999999866554444455667664
No 51
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=26.20 E-value=95 Score=24.21 Aligned_cols=58 Identities=22% Similarity=0.237 Sum_probs=36.2
Q ss_pred ccceEEeecchhHHHHHHHHHHHHHHHHh-cCCCCCCCcccccc-ccceeecC-e--eee-cCCCc
Q psy1520 34 LPVDIYIGGKEHAVLHLYYARFIAHFLHA-QGKTPAREPFKRLL-VQGMIMGQ-T--YRE-KTSGK 93 (107)
Q Consensus 34 mPVD~YIGGiEHAilHLLYaRF~~K~L~D-~G~v~~~EPF~~Ll-~QGMV~~~-~--~k~-ks~Gn 93 (107)
.-+|+-+||.+|- .|+.-+|=+.+-+.. .|- -+.+|-.-+. ..-+|.+- + -|| ||.||
T Consensus 136 ~~~~~vpvG~DQ~-~~iel~Rdia~r~n~~yg~-~f~~P~~li~~~~~~l~gl~G~~~KMSKS~~n 199 (328)
T 1i6k_A 136 YNTDIVPVGEDQK-QHIELTRDLAERFNKRYGE-LFTIPEARIPKVGARIMSLVDPTKKMSKSDPN 199 (328)
T ss_dssp TTCSEEECCGGGH-HHHHHHHHHHHHHHHHHCS-CCCCCEEECCSSSSSCBCSSCTTSBCCTTCSC
T ss_pred hCCCEEecccchH-HHHHHHHHHHHHhCccccc-ccCCCeeeeccccccccCCCCCccCCCCCCCC
Confidence 3689999999998 799988887776653 231 1234432222 23455543 2 454 99888
No 52
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=25.70 E-value=56 Score=26.49 Aligned_cols=53 Identities=15% Similarity=0.053 Sum_probs=31.6
Q ss_pred ceEEeecchhHHHHHHHHHHHHHHHHhcCCCCCCCccccccccceeecCe---eee-cCCCceeCC
Q psy1520 36 VDIYIGGKEHAVLHLYYARFIAHFLHAQGKTPAREPFKRLLVQGMIMGQT---YRE-KTSGKYLKP 97 (107)
Q Consensus 36 VD~YIGGiEHAilHLLYaRF~~K~L~D~G~v~~~EPF~~Ll~QGMV~~~~---~k~-ks~Gn~v~p 97 (107)
.|+-.||+++- .|+.-+|=+.+-+. ..+|+. ++.-+|.+-. -|| ||.||.|.-
T Consensus 225 ~~lvp~G~DQ~-~~i~l~Rdla~r~~------~~~p~~--l~~~~l~gLdG~~~KMSKS~~~~I~L 281 (395)
T 3i05_A 225 FCLIPQAIDQD-PYFRLTRDIAPRLG------YLKPAV--IHSKFFPGLSGPKGKMSSSSGTAVLL 281 (395)
T ss_dssp EEEEEEEGGGH-HHHHHHHHTHHHHT------CCCCEE--EEECCCCCC-------------CCBT
T ss_pred ceEEEeccchH-HHHHHHHHHHHHcC------CCCcee--eccccccCCCCCcccCCCCCCCcccC
Confidence 78999999998 89988887777543 257763 4566676533 464 888887743
No 53
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=24.45 E-value=79 Score=25.77 Aligned_cols=54 Identities=11% Similarity=0.097 Sum_probs=36.7
Q ss_pred ceEEeecchhHHHHHHHHHHHHHHHHhcCCCCCCCccccccccceeecCe---eee-cCC-CceeCCC
Q psy1520 36 VDIYIGGKEHAVLHLYYARFIAHFLHAQGKTPAREPFKRLLVQGMIMGQT---YRE-KTS-GKYLKPD 98 (107)
Q Consensus 36 VD~YIGGiEHAilHLLYaRF~~K~L~D~G~v~~~EPF~~Ll~QGMV~~~~---~k~-ks~-Gn~v~p~ 98 (107)
.|+-.||+++- -|+.-+|=+.+-+. ..+|+. ++.-+|.+-. -|| ||. ||.|.-.
T Consensus 244 a~lvpvG~DQ~-~~i~l~Rdla~r~~------~~~p~~--l~~~~l~gLdG~~~KMSKS~~~~~I~L~ 302 (406)
T 3tze_A 244 MCLVPAAVDQD-PFFRLARDKAKALG------EKKPSS--IYVSLLPDLKGVNRKMSASDPNSSIYLD 302 (406)
T ss_dssp EEEEEEEGGGH-HHHHHHHHHHHHHT------CCCCEE--EEECCCCCTTSCCCCSSCSCGGGSCBTT
T ss_pred CeEEeeccchH-HHHHHHHHHHHHcC------CCCcee--eccCcccCCCCCCcCCCCCCCCCcccCC
Confidence 67888999998 89998887777553 456763 3566666532 365 887 5666443
No 54
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=24.32 E-value=1.1e+02 Score=23.78 Aligned_cols=61 Identities=21% Similarity=0.172 Sum_probs=37.0
Q ss_pred cceEEeecchhHHHHHHHHHHHHHHHHh-cCCCCCCCccccc-cccceeecC-eeee-cCCCceeCC
Q psy1520 35 PVDIYIGGKEHAVLHLYYARFIAHFLHA-QGKTPAREPFKRL-LVQGMIMGQ-TYRE-KTSGKYLKP 97 (107)
Q Consensus 35 PVD~YIGGiEHAilHLLYaRF~~K~L~D-~G~v~~~EPF~~L-l~QGMV~~~-~~k~-ks~Gn~v~p 97 (107)
-+|+-.||.++- .|+.-+|=+.+-+.. .|- -+.+|=.-+ .+.-+|.+- +-|| ||.||.|.-
T Consensus 139 ~~~~vpvG~DQ~-~hi~l~Rdia~r~n~~~g~-~f~~P~~~~~~~~~~l~~l~G~KMSKS~~n~I~L 203 (322)
T 3tzl_A 139 DTRIVPVGKDQI-QHVEIARDIALKVNNEWGE-IFTLPEARVNEEVAVVVGTDGAKMSKSYQNTIDI 203 (322)
T ss_dssp TCSEEECCGGGH-HHHHHHHHHHHHHHHHHCS-CSCCCEEECCCSSCCCBCTTSSBCCGGGTCCCBS
T ss_pred CCcEEEeccchH-HHHHHHHHHHHHhcccccC-CCCCchhhhccccccccCCCCCcCCCCCCCceec
Confidence 479999999998 899888877766543 231 122332222 134455542 2454 898986643
No 55
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=24.29 E-value=1.1e+02 Score=24.04 Aligned_cols=63 Identities=22% Similarity=0.145 Sum_probs=38.9
Q ss_pred cceEEeecchhHHHHHHHHHHHHHHHHh-cCCCCCCCccccccc-cceeecC-e--eee-cCCCc---eeCCCc
Q psy1520 35 PVDIYIGGKEHAVLHLYYARFIAHFLHA-QGKTPAREPFKRLLV-QGMIMGQ-T--YRE-KTSGK---YLKPDE 99 (107)
Q Consensus 35 PVD~YIGGiEHAilHLLYaRF~~K~L~D-~G~v~~~EPF~~Ll~-QGMV~~~-~--~k~-ks~Gn---~v~p~e 99 (107)
-+|+-+||.+|- -|+.-+|=+.+-+.. .|- -..+|-.-+.. ..+|.+- + -|| ||.|| .|.-+|
T Consensus 147 ~a~~vpvG~DQ~-~~lel~Rdia~r~n~~yg~-~f~~P~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~D 218 (348)
T 2yy5_A 147 QPDIVPVGNDQK-QHLELTRDLAQRIQKKFKL-KLRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDD 218 (348)
T ss_dssp CCSEEECCGGGH-HHHHHHHHHHHHHHHHHCC-CCCCCEEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTTC
T ss_pred CccEEEecccHH-HHHHHHHHHHHHhhhhccc-ccCCCeeecccccccccCCCCcchhcCCCCCCCCceEeecC
Confidence 589999999998 799988877776643 241 02234322221 2455542 2 454 99999 665544
No 56
>3u52_A Phenol hydroxylase component PHN; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_A 2inp_A
Probab=22.19 E-value=2.7 Score=35.61 Aligned_cols=53 Identities=15% Similarity=0.188 Sum_probs=32.7
Q ss_pred ccccccCCCCCCCC-CChhh-hcccccceEEeecch-hHHHHHHHHHHHHHHH-HhcCCCCCCCc
Q psy1520 11 KTKTKSRDINAEVS-FNTDK-AQDWLPVDIYIGGKE-HAVLHLYYARFIAHFL-HAQGKTPAREP 71 (107)
Q Consensus 11 ~~~~~~dp~n~~~~-fd~~~-~~~WmPVD~YIGGiE-HAilHLLYaRF~~K~L-~D~G~v~~~EP 71 (107)
++-.||||.+.... -+|++ +..|+|||++++|-= -+. ...+| .=+|+-+..++
T Consensus 427 ~~y~fCs~~C~~~f~~~Pe~y~~~~~~~~~~~~g~~~~~~--------~~~~~~~~~~~~~g~~~ 483 (511)
T 3u52_A 427 ERYHFCSDGCCDIFKHEPEKYIQAWLPVHQIYQGNCEGGD--------LETVVQKYYHINIGEDN 483 (511)
T ss_dssp EEEEESSHHHHHHHHHCHHHHTTCCCHHHHHHTTCSSCSS--------HHHHHHHTSCCCTTTTS
T ss_pred EEEEecChHHHHHHHHCHHHHhcccChHHHHHccCCCCCC--------HHHHHHHHhCCCCCCcc
Confidence 45678888765431 24444 378999999998853 222 24566 44676665444
No 57
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=20.61 E-value=66 Score=26.06 Aligned_cols=53 Identities=11% Similarity=-0.032 Sum_probs=35.7
Q ss_pred ceEEeecchhHHHHHHHHHHHHHHHHhcCCCCCCCccccccccceeecCe---eee-cCCCc-eeCC
Q psy1520 36 VDIYIGGKEHAVLHLYYARFIAHFLHAQGKTPAREPFKRLLVQGMIMGQT---YRE-KTSGK-YLKP 97 (107)
Q Consensus 36 VD~YIGGiEHAilHLLYaRF~~K~L~D~G~v~~~EPF~~Ll~QGMV~~~~---~k~-ks~Gn-~v~p 97 (107)
.|+-.||+++- -|+.-+|=+.+-+ |. .+|+. +...+|.+-. -|| ||.+| .|.-
T Consensus 208 a~~vpvG~DQ~-~hl~l~Rdla~r~---n~---~~p~~--l~~~~l~gLdG~~~KMSKS~~ns~I~L 265 (392)
T 3jxe_A 208 RCLIPAAIDQD-PYWRLQRDFAESL---GY---YKTAA--LHSKFVPSLTSLSGKMSASKPETAIYL 265 (392)
T ss_dssp CEEEEEEGGGH-HHHHHHHHHTGGG---TS---CCCEE--EEECCCCCSSCSSSCCCTTSGGGCCBT
T ss_pred CceeecccchH-HHHHHHHHHHHHc---CC---CCCee--eecccccCCCCCccccccCCCCCeeeC
Confidence 57889999998 8988888766543 43 56653 3356776532 364 89888 6643
Done!