RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1520
         (107 letters)



>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS)
           {Thermus thermophilus [TaxId: 274]}
          Length = 425

 Score = 48.0 bits (113), Expect = 2e-08
 Identities = 18/81 (22%), Positives = 40/81 (49%), Gaps = 8/81 (9%)

Query: 25  FNTDKAQDWLPVDIYIGGKEHAVLHLYYARFIAHFLHAQGKTPAREPFKRLLVQGMIMGQ 84
             T+  + + P D+ + G  + +L L+ +R      H  G+     PFK +L+ G+++ +
Sbjct: 318 EETEDLKAFYPGDVLVTG--YDILFLWVSRMEVSGYHFMGE----RPFKTVLLHGLVLDE 371

Query: 85  TYRE--KTSGKYLKPDEVFTK 103
             ++  K+ G  + P E+  +
Sbjct: 372 KGQKMSKSKGNVIDPLEMVER 392


>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS)
           {Thermus thermophilus [TaxId: 274]}
          Length = 494

 Score = 45.4 bits (106), Expect = 2e-07
 Identities = 34/72 (47%), Positives = 42/72 (58%)

Query: 19  INAEVSFNTDKAQDWLPVDIYIGGKEHAVLHLYYARFIAHFLHAQGKTPAREPFKRLLVQ 78
            N  + F+ +KA  W+PVD YIGG EHAVLHL Y+RF   FLH  G     EPF+ L  Q
Sbjct: 323 HNDRLPFDPEKANAWMPVDQYIGGVEHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGLFTQ 382

Query: 79  GMIMGQTYREKT 90
           GM++  T     
Sbjct: 383 GMVLAWTDFGPV 394


>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase
           (IleRS) {Staphylococcus aureus [TaxId: 1280]}
          Length = 450

 Score = 39.6 bits (91), Expect = 2e-05
 Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 8/78 (10%)

Query: 28  DKAQDWLPVDIYIGGKEHAVLHLYYARFIAHFLHAQGKTPAREPFKRLLVQGMIMGQTYR 87
            + +   P D+Y+ G +      ++   I   +  +G      P+K LL  G +M    +
Sbjct: 347 TRPELSFPADMYLEGSDQ--YRGWFNSSITTSVATRGV----SPYKFLLSHGFVMDGEGK 400

Query: 88  E--KTSGKYLKPDEVFTK 103
           +  K+ G  + PD+V  +
Sbjct: 401 KMSKSLGNVIVPDQVVKQ 418


>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase
           (IleRS) {Thermus thermophilus [TaxId: 274]}
          Length = 452

 Score = 34.5 bits (78), Expect = 0.001
 Identities = 15/81 (18%), Positives = 32/81 (39%), Gaps = 10/81 (12%)

Query: 26  NTDKAQDWLPVDIYIGGKEHAVLHLYYARFIAHFLHAQGKTPA-REPFKRLLVQGMIMGQ 84
           + +  ++  P D    G +         R   + LH  G        FK ++  G+I+ +
Sbjct: 346 HEEVFRESFPADFIAEGIDQT-------RGWFNSLHQLGVMLFGSIAFKNVICHGLILDE 398

Query: 85  TYRE--KTSGKYLKPDEVFTK 103
             ++  K+ G  + P ++  K
Sbjct: 399 KGQKMSKSKGNVVDPWDIIRK 419


>d2pw9a1 c.97.1.5 (A:7-257) Uncharacterized protein DP1777
          {Desulfotalea psychrophila [TaxId: 84980]}
          Length = 251

 Score = 26.2 bits (57), Expect = 0.91
 Identities = 9/35 (25%), Positives = 11/35 (31%), Gaps = 7/35 (20%)

Query: 35 PVDIYIGGKEHAVL-----HLYYARFIAHFLHAQG 64
          P  I +  +           L    F A FL  QG
Sbjct: 28 PYAIALNDRVIGSSMVLPVDLEE--FGAGFLFGQG 60


>d1f0la1 b.2.1.1 (A:381-535) Diphtheria toxin, C-terminal domain
           {Corynebacterium diphtheriae [TaxId: 1717]}
          Length = 155

 Score = 23.9 bits (51), Expect = 4.2
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 6/52 (11%)

Query: 11  KTKTKSRDINAEVSFNTDKAQDWLPVDIYIGGKEHAVLHLYYARFIAHFLHA 62
           K + + R I+ +V+F   K+       +Y+G   HA LH+ + R  +  +H+
Sbjct: 76  KIRMRCRAIDGDVTFCRPKSP------VYVGNGVHANLHVAFHRSSSEKIHS 121


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.134    0.398 

Gapped
Lambda     K      H
   0.267   0.0630    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 386,784
Number of extensions: 15918
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 11
Length of query: 107
Length of database: 2,407,596
Length adjustment: 67
Effective length of query: 40
Effective length of database: 1,487,686
Effective search space: 59507440
Effective search space used: 59507440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.1 bits)