Query psy15201
Match_columns 97
No_of_seqs 100 out of 1066
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 23:16:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15201.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15201hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5256 TEF1 Translation elong 99.9 1.4E-25 3.1E-30 170.7 8.9 84 9-95 140-223 (428)
2 COG2895 CysN GTPases - Sulfate 99.9 1.1E-23 2.3E-28 158.6 7.9 83 9-96 134-216 (431)
3 KOG0458|consensus 99.9 3.9E-22 8.3E-27 156.6 6.6 86 9-94 310-396 (603)
4 cd01883 EF1_alpha Eukaryotic e 99.8 3.1E-19 6.7E-24 126.0 9.2 84 10-96 133-218 (219)
5 PTZ00141 elongation factor 1- 99.8 2.8E-19 6E-24 138.3 8.0 84 9-95 140-225 (446)
6 PLN00043 elongation factor 1-a 99.8 3.1E-19 6.8E-24 138.0 7.3 83 10-95 141-225 (447)
7 cd04166 CysN_ATPS CysN_ATPS su 99.7 7.4E-18 1.6E-22 118.0 8.8 80 11-95 127-206 (208)
8 PRK12317 elongation factor 1-a 99.7 5.7E-17 1.2E-21 124.0 8.3 84 9-95 134-217 (425)
9 KOG0459|consensus 99.7 3.3E-17 7.2E-22 125.3 6.6 84 9-94 212-298 (501)
10 TIGR02034 CysN sulfate adenyly 99.7 8.2E-17 1.8E-21 123.1 8.0 82 9-95 128-209 (406)
11 cd01884 EF_Tu EF-Tu subfamily. 99.7 1.4E-16 3E-21 111.4 7.9 79 9-94 113-192 (195)
12 TIGR00483 EF-1_alpha translati 99.7 1.9E-16 4E-21 121.3 8.3 84 9-95 136-219 (426)
13 PRK05124 cysN sulfate adenylyl 99.7 2.5E-16 5.3E-21 122.7 7.9 83 9-95 155-237 (474)
14 PRK05506 bifunctional sulfate 99.6 1.2E-15 2.7E-20 121.9 7.8 82 9-95 152-233 (632)
15 CHL00071 tufA elongation facto 99.4 3.3E-13 7.2E-18 103.3 6.7 84 9-93 123-209 (409)
16 PLN03126 Elongation factor Tu; 99.4 2E-12 4.3E-17 101.1 7.1 84 9-93 192-278 (478)
17 PRK00049 elongation factor Tu; 99.3 4.1E-12 8.9E-17 97.0 7.1 77 9-92 123-200 (396)
18 PRK12735 elongation factor Tu; 99.3 1.1E-11 2.3E-16 94.6 7.0 78 9-93 123-201 (396)
19 TIGR00485 EF-Tu translation el 99.2 3.6E-11 7.8E-16 91.6 6.4 76 9-93 123-199 (394)
20 PRK12736 elongation factor Tu; 99.2 7.8E-11 1.7E-15 89.9 6.8 75 9-92 123-198 (394)
21 PLN03127 Elongation factor Tu; 99.0 1.4E-09 2.9E-14 84.6 6.4 76 9-93 172-250 (447)
22 PTZ00327 eukaryotic translatio 98.9 2.2E-09 4.8E-14 83.8 6.4 58 9-70 166-223 (460)
23 PF00009 GTP_EFTU: Elongation 98.9 6.4E-09 1.4E-13 71.4 6.2 57 9-69 118-176 (188)
24 COG5257 GCD11 Translation init 98.7 1.1E-08 2.4E-13 77.3 3.8 57 10-70 136-192 (415)
25 PRK10512 selenocysteinyl-tRNA- 98.6 5.7E-08 1.2E-12 78.2 6.2 59 9-71 99-157 (614)
26 TIGR00475 selB selenocysteine- 98.6 9.2E-08 2E-12 76.5 6.5 61 9-72 98-158 (581)
27 KOG0460|consensus 98.5 1.9E-07 4E-12 71.2 5.8 78 9-92 165-242 (449)
28 cd01888 eIF2_gamma eIF2-gamma 98.5 1.9E-07 4.2E-12 65.0 4.9 58 10-71 133-190 (203)
29 COG0050 TufB GTPases - transla 98.5 3.7E-07 8.1E-12 68.6 6.0 75 9-92 123-198 (394)
30 cd04171 SelB SelB subfamily. 98.5 3.6E-07 7.8E-12 59.8 5.1 57 11-71 101-157 (164)
31 TIGR03680 eif2g_arch translati 98.4 7.5E-07 1.6E-11 68.3 6.0 58 9-70 129-186 (406)
32 TIGR03598 GTPase_YsxC ribosome 98.3 2.3E-06 5E-11 58.0 6.5 50 15-69 130-179 (179)
33 COG1160 Predicted GTPases [Gen 98.3 1.1E-06 2.4E-11 68.5 5.4 53 15-71 290-342 (444)
34 cd01889 SelB_euk SelB subfamil 98.3 1.1E-06 2.3E-11 60.3 4.8 57 12-71 119-177 (192)
35 cd04165 GTPBP1_like GTPBP1-lik 98.3 1E-06 2.2E-11 62.8 4.5 60 9-71 134-214 (224)
36 cd01891 TypA_BipA TypA (tyrosi 98.3 2.1E-06 4.6E-11 58.9 5.7 57 12-72 116-174 (194)
37 KOG1145|consensus 98.3 1E-06 2.2E-11 70.4 4.5 58 8-72 248-308 (683)
38 COG0532 InfB Translation initi 98.3 5.6E-07 1.2E-11 71.0 2.9 56 8-71 102-161 (509)
39 cd00881 GTP_translation_factor 98.2 2.7E-06 6E-11 56.8 4.7 56 14-71 114-178 (189)
40 PRK04000 translation initiatio 98.2 2.9E-06 6.2E-11 65.4 5.2 57 10-70 135-191 (411)
41 TIGR03594 GTPase_EngA ribosome 98.2 2.5E-06 5.3E-11 65.1 4.5 52 15-71 284-335 (429)
42 cd01895 EngA2 EngA2 subfamily. 98.1 6E-06 1.3E-10 54.0 4.3 52 15-70 114-165 (174)
43 PRK00093 GTP-binding protein D 98.0 9.1E-06 2E-10 62.2 4.5 51 15-71 285-335 (435)
44 PRK04004 translation initiatio 98.0 1.2E-05 2.6E-10 64.6 5.1 61 10-71 120-209 (586)
45 cd04160 Arfrp1 Arfrp1 subfamil 97.9 6.5E-06 1.4E-10 54.4 2.0 53 15-71 108-160 (167)
46 PRK05306 infB translation init 97.8 2.2E-05 4.7E-10 65.1 4.7 58 8-72 384-444 (787)
47 PRK14845 translation initiatio 97.8 3.6E-05 7.7E-10 65.5 5.4 62 10-72 575-665 (1049)
48 PRK03003 GTP-binding protein D 97.8 2.7E-05 5.8E-10 60.8 4.2 52 15-72 323-374 (472)
49 PRK10463 hydrogenase nickel in 97.8 3E-05 6.6E-10 57.7 3.8 47 17-70 233-279 (290)
50 PRK09866 hypothetical protein; 97.7 6.7E-05 1.5E-09 61.4 5.9 55 15-71 290-344 (741)
51 TIGR02528 EutP ethanolamine ut 97.7 4.1E-05 8.9E-10 49.5 3.7 48 15-71 89-136 (142)
52 cd01887 IF2_eIF5B IF2/eIF5B (i 97.7 4.7E-05 1E-09 50.1 3.8 55 12-71 101-157 (168)
53 COG3276 SelB Selenocysteine-sp 97.7 3.1E-05 6.7E-10 60.4 3.3 56 10-72 99-154 (447)
54 TIGR00487 IF-2 translation ini 97.7 8.2E-05 1.8E-09 59.9 5.5 56 9-71 183-241 (587)
55 COG1159 Era GTPase [General fu 97.7 6.9E-05 1.5E-09 55.9 4.7 49 15-71 115-163 (298)
56 cd04151 Arl1 Arl1 subfamily. 97.7 5.3E-05 1.1E-09 49.9 3.7 51 15-71 101-151 (158)
57 cd04154 Arl2 Arl2 subfamily. 97.7 4.5E-05 9.8E-10 51.1 3.4 52 14-71 115-166 (173)
58 cd04167 Snu114p Snu114p subfam 97.7 6.1E-05 1.3E-09 52.7 4.1 62 12-82 122-191 (213)
59 PRK15467 ethanolamine utilizat 97.6 7.9E-05 1.7E-09 50.0 4.3 47 15-71 92-138 (158)
60 PRK04213 GTP-binding protein; 97.6 4.4E-05 9.6E-10 52.3 2.8 51 12-71 129-183 (201)
61 TIGR00073 hypB hydrogenase acc 97.6 6.2E-05 1.3E-09 52.6 3.3 48 16-70 150-197 (207)
62 TIGR00231 small_GTP small GTP- 97.6 0.00012 2.5E-09 46.5 4.1 48 14-71 108-155 (161)
63 cd01849 YlqF_related_GTPase Yl 97.6 0.00017 3.7E-09 48.0 5.0 47 15-71 30-76 (155)
64 TIGR00436 era GTP-binding prot 97.6 0.00014 3E-09 52.7 4.8 49 15-72 108-156 (270)
65 cd01890 LepA LepA subfamily. 97.6 0.00012 2.6E-09 48.8 4.2 50 13-71 119-168 (179)
66 PRK09518 bifunctional cytidyla 97.5 9.2E-05 2E-09 60.6 4.1 51 15-71 562-612 (712)
67 smart00174 RHO Rho (Ras homolo 97.5 0.00013 2.9E-09 48.4 4.2 53 14-71 102-163 (174)
68 KOG0461|consensus 97.5 0.00023 5.1E-09 54.9 5.8 53 12-65 120-174 (522)
69 cd01897 NOG NOG1 is a nucleola 97.5 0.00014 3E-09 48.0 4.0 47 14-71 113-159 (168)
70 TIGR00491 aIF-2 translation in 97.5 0.00017 3.7E-09 58.2 5.2 19 54-72 190-208 (590)
71 KOG0466|consensus 97.5 9.8E-05 2.1E-09 56.1 3.6 56 11-70 176-231 (466)
72 cd01882 BMS1 Bms1. Bms1 is an 97.5 0.00041 8.8E-09 49.3 6.5 57 11-70 130-186 (225)
73 cd01857 HSR1_MMR1 HSR1/MMR1. 97.5 0.00036 7.7E-09 45.8 5.6 43 14-67 42-84 (141)
74 cd01855 YqeH YqeH. YqeH is an 97.5 0.00014 3.1E-09 49.8 3.8 54 15-71 62-116 (190)
75 cd04135 Tc10 TC10 subfamily. 97.5 0.00013 2.8E-09 48.5 3.4 54 14-71 104-165 (174)
76 cd04157 Arl6 Arl6 subfamily. 97.5 0.00014 3E-09 47.5 3.5 51 15-71 105-155 (162)
77 PRK00089 era GTPase Era; Revie 97.4 0.00024 5.3E-09 51.7 4.8 49 15-71 114-162 (292)
78 cd04138 H_N_K_Ras_like H-Ras/N 97.4 0.00016 3.4E-09 47.0 3.4 48 14-71 106-153 (162)
79 cd00878 Arf_Arl Arf (ADP-ribos 97.4 0.00015 3.3E-09 47.4 3.4 53 13-71 99-151 (158)
80 cd04149 Arf6 Arf6 subfamily. 97.4 0.00018 3.9E-09 48.4 3.6 51 15-71 111-161 (168)
81 TIGR01394 TypA_BipA GTP-bindin 97.4 0.00022 4.9E-09 57.5 4.8 59 9-71 112-172 (594)
82 PRK00454 engB GTP-binding prot 97.4 0.00038 8.1E-09 47.1 5.2 52 12-71 134-185 (196)
83 cd01879 FeoB Ferrous iron tran 97.4 0.00018 3.8E-09 46.8 3.4 47 15-71 102-148 (158)
84 TIGR02729 Obg_CgtA Obg family 97.4 0.00025 5.5E-09 53.3 4.6 48 14-71 273-320 (329)
85 cd04139 RalA_RalB RalA/RalB su 97.4 0.00017 3.7E-09 47.0 3.2 49 14-71 105-153 (164)
86 CHL00189 infB translation init 97.4 0.00019 4.2E-09 59.3 4.1 56 9-71 343-401 (742)
87 cd04150 Arf1_5_like Arf1-Arf5- 97.4 0.00027 5.9E-09 47.0 3.9 52 14-71 101-152 (159)
88 cd01858 NGP_1 NGP-1. Autoanti 97.4 0.00029 6.3E-09 46.9 4.1 46 15-70 40-85 (157)
89 PF10662 PduV-EutP: Ethanolami 97.3 0.0003 6.5E-09 47.5 4.0 55 7-71 83-137 (143)
90 COG1162 Predicted GTPases [Gen 97.3 0.00033 7.3E-09 52.4 4.5 53 9-71 106-158 (301)
91 cd01876 YihA_EngB The YihA (En 97.3 0.00053 1.1E-08 44.3 4.9 51 15-70 111-161 (170)
92 TIGR03597 GTPase_YqeH ribosome 97.3 0.00027 5.8E-09 53.6 3.9 57 12-71 88-144 (360)
93 cd01898 Obg Obg subfamily. Th 97.3 0.0003 6.5E-09 46.4 3.6 49 14-71 114-162 (170)
94 PRK10218 GTP-binding protein; 97.3 0.00039 8.5E-09 56.3 4.8 60 9-72 116-177 (607)
95 cd01864 Rab19 Rab19 subfamily. 97.3 0.00027 5.8E-09 46.7 3.2 49 15-71 109-157 (165)
96 cd04153 Arl5_Arl8 Arl5/Arl8 su 97.3 0.00032 7E-09 47.2 3.6 51 15-71 117-167 (174)
97 cd04128 Spg1 Spg1p. Spg1p (se 97.3 0.00045 9.8E-09 47.2 4.3 49 18-71 108-157 (182)
98 cd01859 MJ1464 MJ1464. This f 97.3 0.00043 9.2E-09 45.9 4.1 46 15-71 42-87 (156)
99 PRK12289 GTPase RsgA; Reviewed 97.3 0.00048 1E-08 52.4 4.8 49 12-72 119-167 (352)
100 PRK09435 membrane ATPase/prote 97.3 0.00047 1E-08 52.2 4.5 53 18-72 198-252 (332)
101 cd01870 RhoA_like RhoA-like su 97.3 0.0006 1.3E-08 45.3 4.6 53 14-71 105-166 (175)
102 PRK13796 GTPase YqeH; Provisio 97.3 0.00038 8.2E-09 53.0 4.1 57 12-71 94-150 (365)
103 cd04116 Rab9 Rab9 subfamily. 97.2 0.00034 7.3E-09 46.4 3.3 47 15-70 115-161 (170)
104 cd04145 M_R_Ras_like M-Ras/R-R 97.2 0.00026 5.6E-09 46.3 2.7 48 15-71 108-155 (164)
105 cd04107 Rab32_Rab38 Rab38/Rab3 97.2 0.00033 7.3E-09 48.2 3.4 49 15-71 111-159 (201)
106 cd04118 Rab24 Rab24 subfamily. 97.2 0.00024 5.3E-09 48.2 2.6 52 15-71 106-157 (193)
107 PRK12296 obgE GTPase CgtA; Rev 97.2 0.00033 7.1E-09 55.7 3.6 48 14-71 284-331 (500)
108 cd04106 Rab23_lke Rab23-like s 97.2 0.00026 5.7E-09 46.3 2.7 48 15-71 107-154 (162)
109 cd01894 EngA1 EngA1 subfamily. 97.2 0.00052 1.1E-08 44.3 4.0 44 15-71 106-149 (157)
110 smart00173 RAS Ras subfamily o 97.2 0.0003 6.4E-09 46.2 2.8 48 15-71 106-153 (164)
111 cd01862 Rab7 Rab7 subfamily. 97.2 0.00038 8.1E-09 45.9 3.3 50 14-71 109-158 (172)
112 PRK12299 obgE GTPase CgtA; Rev 97.2 0.00039 8.5E-09 52.5 3.7 49 14-71 271-319 (335)
113 cd00157 Rho Rho (Ras homology) 97.2 0.00045 9.7E-09 45.5 3.6 53 14-71 104-164 (171)
114 cd01874 Cdc42 Cdc42 subfamily. 97.2 0.00072 1.6E-08 45.8 4.6 52 15-71 106-166 (175)
115 cd04136 Rap_like Rap-like subf 97.2 0.00032 7E-09 45.8 2.7 48 15-71 107-154 (163)
116 TIGR00101 ureG urease accessor 97.2 0.00034 7.3E-09 49.0 2.9 47 18-71 141-187 (199)
117 cd04156 ARLTS1 ARLTS1 subfamil 97.2 0.00047 1E-08 45.1 3.3 52 14-71 101-153 (160)
118 cd01893 Miro1 Miro1 subfamily. 97.1 0.00058 1.3E-08 45.4 3.6 52 15-71 104-155 (166)
119 cd01865 Rab3 Rab3 subfamily. 97.1 0.00051 1.1E-08 45.5 3.3 49 14-71 106-154 (165)
120 cd04163 Era Era subfamily. Er 97.1 0.00085 1.8E-08 43.1 4.2 48 15-70 112-159 (168)
121 cd04142 RRP22 RRP22 subfamily. 97.1 0.00052 1.1E-08 47.7 3.3 50 15-72 117-166 (198)
122 PLN00223 ADP-ribosylation fact 97.1 0.00063 1.4E-08 46.4 3.6 52 14-71 118-169 (181)
123 cd00880 Era_like Era (E. coli 97.1 0.001 2.3E-08 42.0 4.4 52 13-70 103-154 (163)
124 PRK01889 GTPase RsgA; Reviewed 97.1 0.00054 1.2E-08 52.0 3.6 51 9-71 138-188 (356)
125 PRK12297 obgE GTPase CgtA; Rev 97.1 0.0006 1.3E-08 53.1 3.9 45 14-71 274-318 (424)
126 cd04175 Rap1 Rap1 subgroup. T 97.1 0.00041 8.8E-09 45.7 2.6 48 15-71 107-154 (164)
127 cd04122 Rab14 Rab14 subfamily. 97.1 0.00061 1.3E-08 45.1 3.3 48 15-71 108-155 (166)
128 cd04130 Wrch_1 Wrch-1 subfamil 97.1 0.00033 7.1E-09 46.9 2.0 52 15-71 105-165 (173)
129 cd04132 Rho4_like Rho4-like su 97.1 0.00032 7E-09 47.3 2.0 53 15-71 106-158 (187)
130 PRK12298 obgE GTPase CgtA; Rev 97.1 0.0011 2.3E-08 51.1 5.0 50 14-71 275-324 (390)
131 cd04158 ARD1 ARD1 subfamily. 97.1 0.0004 8.8E-09 46.4 2.4 51 15-71 101-152 (169)
132 COG1217 TypA Predicted membran 97.1 0.00083 1.8E-08 53.4 4.4 63 7-73 114-178 (603)
133 PF02421 FeoB_N: Ferrous iron 97.0 0.00014 3E-09 49.6 -0.1 49 11-70 103-151 (156)
134 PRK12288 GTPase RsgA; Reviewed 97.0 0.0013 2.9E-08 49.9 5.2 52 11-71 148-199 (347)
135 smart00177 ARF ARF-like small 97.0 0.00088 1.9E-08 45.2 3.7 51 15-71 115-165 (175)
136 cd04176 Rap2 Rap2 subgroup. T 97.0 0.00062 1.4E-08 44.7 2.9 48 15-71 107-154 (163)
137 cd04159 Arl10_like Arl10-like 97.0 0.0011 2.4E-08 42.4 4.0 50 15-70 102-151 (159)
138 cd04152 Arl4_Arl7 Arl4/Arl7 su 97.0 0.00084 1.8E-08 45.6 3.5 50 15-71 110-161 (183)
139 cd01868 Rab11_like Rab11-like. 97.0 0.0007 1.5E-08 44.5 3.0 47 15-70 109-155 (165)
140 cd01881 Obg_like The Obg-like 97.0 0.00056 1.2E-08 45.1 2.5 49 14-71 120-168 (176)
141 cd04108 Rab36_Rab34 Rab34/Rab3 97.0 0.00086 1.9E-08 45.1 3.5 50 15-71 107-156 (170)
142 cd00879 Sar1 Sar1 subfamily. 97.0 0.00067 1.5E-08 45.8 2.9 51 15-71 121-182 (190)
143 cd04124 RabL2 RabL2 subfamily. 97.0 0.0017 3.8E-08 42.9 4.8 45 15-71 105-149 (161)
144 cd04134 Rho3 Rho3 subfamily. 97.0 0.0013 2.8E-08 44.9 4.2 53 15-71 105-165 (189)
145 cd01871 Rac1_like Rac1-like su 97.0 0.0016 3.6E-08 44.0 4.7 52 15-71 106-166 (174)
146 PRK15494 era GTPase Era; Provi 97.0 0.00083 1.8E-08 50.6 3.5 49 12-71 159-207 (339)
147 PRK00098 GTPase RsgA; Reviewed 97.0 0.00087 1.9E-08 49.6 3.5 49 12-71 110-158 (298)
148 TIGR00157 ribosome small subun 97.0 0.0016 3.4E-08 47.0 4.7 50 12-72 66-115 (245)
149 cd04140 ARHI_like ARHI subfami 96.9 0.00077 1.7E-08 44.6 2.8 48 15-71 109-156 (165)
150 cd04155 Arl3 Arl3 subfamily. 96.9 0.001 2.2E-08 44.1 3.4 51 15-71 116-166 (173)
151 cd00877 Ran Ran (Ras-related n 96.9 0.00086 1.9E-08 44.8 3.0 47 14-71 104-150 (166)
152 cd01863 Rab18 Rab18 subfamily. 96.9 0.0015 3.2E-08 42.7 4.1 47 15-71 107-153 (161)
153 cd04177 RSR1 RSR1 subgroup. R 96.9 0.00094 2E-08 44.4 3.1 49 15-71 107-155 (168)
154 PTZ00133 ADP-ribosylation fact 96.9 0.00099 2.2E-08 45.4 3.3 52 14-71 118-169 (182)
155 cd04144 Ras2 Ras2 subfamily. 96.9 0.00087 1.9E-08 45.7 3.0 48 15-71 107-154 (190)
156 cd01875 RhoG RhoG subfamily. 96.9 0.002 4.3E-08 44.2 4.7 52 15-71 108-168 (191)
157 cd01878 HflX HflX subfamily. 96.9 0.001 2.3E-08 45.6 3.3 43 15-71 154-196 (204)
158 cd04114 Rab30 Rab30 subfamily. 96.9 0.0011 2.4E-08 43.7 3.2 47 15-70 113-159 (169)
159 cd01867 Rab8_Rab10_Rab13_like 96.9 0.001 2.2E-08 44.2 3.1 48 15-71 109-156 (167)
160 cd04127 Rab27A Rab27a subfamil 96.9 0.00084 1.8E-08 44.8 2.6 48 15-71 121-168 (180)
161 cd04119 RJL RJL (RabJ-Like) su 96.9 0.0012 2.5E-08 43.1 3.1 49 14-71 110-158 (168)
162 cd04143 Rhes_like Rhes_like su 96.9 0.001 2.2E-08 48.0 3.0 51 13-71 112-162 (247)
163 KOG1489|consensus 96.8 0.00059 1.3E-08 51.8 1.8 51 10-71 308-358 (366)
164 cd01892 Miro2 Miro2 subfamily. 96.8 0.00073 1.6E-08 45.4 2.1 50 14-71 108-157 (169)
165 cd04109 Rab28 Rab28 subfamily. 96.8 0.0013 2.8E-08 45.9 3.5 48 15-71 110-157 (215)
166 cd00154 Rab Rab family. Rab G 96.8 0.0017 3.7E-08 41.4 3.7 49 14-71 105-153 (159)
167 cd04141 Rit_Rin_Ric Rit/Rin/Ri 96.8 0.00096 2.1E-08 45.0 2.6 48 15-71 108-155 (172)
168 cd04137 RheB Rheb (Ras Homolog 96.8 0.001 2.2E-08 44.5 2.7 48 15-71 107-154 (180)
169 cd01856 YlqF YlqF. Proteins o 96.8 0.0015 3.3E-08 44.1 3.5 47 14-71 46-92 (171)
170 COG0536 Obg Predicted GTPase [ 96.8 0.0019 4.1E-08 49.4 4.3 52 12-71 273-324 (369)
171 cd00876 Ras Ras family. The R 96.8 0.0012 2.6E-08 42.7 2.9 48 14-70 104-151 (160)
172 cd04112 Rab26 Rab26 subfamily. 96.8 0.001 2.2E-08 45.4 2.6 48 15-71 107-154 (191)
173 cd04123 Rab21 Rab21 subfamily. 96.8 0.0012 2.6E-08 42.8 2.8 49 14-71 105-153 (162)
174 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 96.8 0.00099 2.2E-08 43.9 2.5 48 15-71 108-155 (166)
175 cd01885 EF2 EF2 (for archaea a 96.8 0.0018 4E-08 46.2 4.0 37 11-48 123-167 (222)
176 PRK13768 GTPase; Provisional 96.8 0.0017 3.7E-08 47.0 3.9 52 15-71 163-238 (253)
177 cd01861 Rab6 Rab6 subfamily. 96.8 0.0013 2.7E-08 43.0 2.9 48 15-71 106-153 (161)
178 cd04101 RabL4 RabL4 (Rab-like4 96.8 0.00098 2.1E-08 43.7 2.3 48 15-71 108-155 (164)
179 COG5258 GTPBP1 GTPase [General 96.8 0.0039 8.4E-08 48.8 5.7 57 12-71 254-330 (527)
180 PRK05433 GTP-binding protein L 96.7 0.0022 4.7E-08 51.9 4.4 50 12-70 125-174 (600)
181 cd04164 trmE TrmE (MnmE, ThdF, 96.7 0.0011 2.4E-08 42.6 2.2 43 13-71 106-148 (157)
182 PTZ00099 rab6; Provisional 96.7 0.0011 2.5E-08 45.3 2.4 48 15-71 86-133 (176)
183 smart00178 SAR Sar1p-like memb 96.7 0.001 2.2E-08 45.3 2.1 53 15-71 119-176 (184)
184 TIGR01393 lepA GTP-binding pro 96.7 0.0031 6.8E-08 50.9 5.1 50 12-70 121-170 (595)
185 cd04110 Rab35 Rab35 subfamily. 96.7 0.002 4.2E-08 44.4 3.2 49 14-71 110-158 (199)
186 cd01860 Rab5_related Rab5-rela 96.6 0.0028 6E-08 41.4 3.7 48 15-71 107-154 (163)
187 cd01866 Rab2 Rab2 subfamily. 96.6 0.002 4.3E-08 42.8 3.0 48 15-71 110-157 (168)
188 cd04129 Rho2 Rho2 subfamily. 96.6 0.0011 2.4E-08 45.1 1.8 53 14-71 105-164 (187)
189 smart00175 RAB Rab subfamily o 96.6 0.0018 3.9E-08 42.2 2.7 49 14-71 105-153 (164)
190 cd04147 Ras_dva Ras-dva subfam 96.6 0.003 6.4E-08 43.4 3.9 51 14-71 104-154 (198)
191 cd04113 Rab4 Rab4 subfamily. 96.6 0.0015 3.3E-08 42.7 2.3 48 15-71 106-153 (161)
192 COG0378 HypB Ni2+-binding GTPa 96.6 0.00096 2.1E-08 47.3 1.3 47 17-70 145-191 (202)
193 TIGR03596 GTPase_YlqF ribosome 96.5 0.0068 1.5E-07 44.3 5.4 49 12-71 46-94 (276)
194 cd04126 Rab20 Rab20 subfamily. 96.5 0.0022 4.8E-08 45.6 2.8 57 15-71 101-181 (220)
195 TIGR00437 feoB ferrous iron tr 96.5 0.0012 2.6E-08 53.3 1.5 50 12-72 98-147 (591)
196 PRK09554 feoB ferrous iron tra 96.5 0.002 4.4E-08 53.5 2.8 51 10-71 109-159 (772)
197 cd00882 Ras_like_GTPase Ras-li 96.5 0.0083 1.8E-07 37.1 5.1 50 13-70 101-150 (157)
198 cd01854 YjeQ_engC YjeQ/EngC. 96.5 0.0042 9E-08 45.8 4.1 49 12-72 108-156 (287)
199 KOG0462|consensus 96.5 0.0043 9.3E-08 50.1 4.3 53 9-70 173-225 (650)
200 cd01886 EF-G Elongation factor 96.4 0.0033 7.3E-08 46.0 3.4 49 10-66 113-161 (270)
201 cd04148 RGK RGK subfamily. Th 96.4 0.0024 5.2E-08 45.0 2.5 48 15-71 107-154 (221)
202 TIGR00750 lao LAO/AO transport 96.4 0.0072 1.6E-07 44.7 5.2 55 15-71 173-229 (300)
203 cd04133 Rop_like Rop subfamily 96.4 0.0039 8.4E-08 42.6 3.4 53 15-71 106-164 (176)
204 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 96.4 0.0045 9.6E-08 42.5 3.7 53 15-71 110-171 (182)
205 cd04121 Rab40 Rab40 subfamily. 96.4 0.0024 5.3E-08 44.2 2.4 48 15-71 111-158 (189)
206 cd04103 Centaurin_gamma Centau 96.4 0.0014 3.1E-08 43.8 1.1 51 15-71 100-150 (158)
207 PTZ00369 Ras-like protein; Pro 96.4 0.0038 8.3E-08 42.5 3.2 48 15-71 111-158 (189)
208 PLN03118 Rab family protein; P 96.4 0.0035 7.5E-08 43.5 2.9 47 16-71 122-168 (211)
209 COG0481 LepA Membrane GTPase L 96.4 0.0036 7.8E-08 50.0 3.3 47 16-70 130-176 (603)
210 cd04161 Arl2l1_Arl13_like Arl2 96.3 0.0022 4.8E-08 42.8 1.8 47 14-65 100-148 (167)
211 COG1160 Predicted GTPases [Gen 96.3 0.0052 1.1E-07 48.2 3.9 45 14-71 112-156 (444)
212 cd04120 Rab12 Rab12 subfamily. 96.3 0.0036 7.7E-08 43.9 2.8 49 15-71 106-154 (202)
213 cd01873 RhoBTB RhoBTB subfamil 96.3 0.0029 6.3E-08 43.9 2.2 52 15-71 121-187 (195)
214 KOG1144|consensus 96.2 0.0051 1.1E-07 51.4 3.7 20 52-71 659-678 (1064)
215 cd04125 RabA_like RabA-like su 96.2 0.0041 9E-08 42.1 2.7 48 15-71 106-153 (188)
216 PF00025 Arf: ADP-ribosylation 96.1 0.0068 1.5E-07 41.1 3.4 51 13-70 114-166 (175)
217 TIGR03594 GTPase_EngA ribosome 96.1 0.0048 1E-07 47.1 2.9 44 15-71 108-151 (429)
218 smart00176 RAN Ran (Ras-relate 96.1 0.0059 1.3E-07 42.7 3.0 46 15-71 100-145 (200)
219 PLN03108 Rab family protein; P 96.1 0.0062 1.4E-07 42.4 3.0 49 14-71 111-159 (210)
220 cd04104 p47_IIGP_like p47 (47- 96.1 0.018 3.8E-07 39.8 5.2 48 15-64 108-166 (197)
221 cd04111 Rab39 Rab39 subfamily. 96.0 0.0079 1.7E-07 42.0 3.4 48 15-71 110-157 (211)
222 TIGR03156 GTP_HflX GTP-binding 96.0 0.0067 1.5E-07 46.0 3.3 43 14-71 301-343 (351)
223 PRK03003 GTP-binding protein D 96.0 0.008 1.7E-07 47.1 3.7 44 15-71 147-190 (472)
224 cd04146 RERG_RasL11_like RERG/ 96.0 0.004 8.7E-08 41.0 1.8 48 15-71 107-155 (165)
225 cd01896 DRG The developmentall 96.0 0.0089 1.9E-07 42.7 3.7 42 15-72 177-218 (233)
226 cd04117 Rab15 Rab15 subfamily. 96.0 0.0076 1.7E-07 39.9 3.0 48 15-71 106-153 (161)
227 PRK09563 rbgA GTPase YlqF; Rev 95.9 0.02 4.3E-07 42.1 5.2 48 12-70 49-96 (287)
228 COG1703 ArgK Putative periplas 95.9 0.0092 2E-07 45.0 3.5 60 10-71 186-245 (323)
229 PRK00007 elongation factor G; 95.9 0.0098 2.1E-07 48.7 4.0 49 9-65 123-171 (693)
230 PLN03110 Rab GTPase; Provision 95.9 0.0068 1.5E-07 42.4 2.5 48 15-71 118-165 (216)
231 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 95.9 0.014 3.1E-07 41.9 4.2 53 15-71 118-179 (232)
232 cd04131 Rnd Rnd subfamily. Th 95.8 0.013 2.9E-07 39.8 3.8 53 14-70 105-166 (178)
233 PRK09602 translation-associate 95.8 0.0086 1.9E-07 46.3 3.1 44 14-70 217-260 (396)
234 cd01899 Ygr210 Ygr210 subfamil 95.7 0.013 2.9E-07 44.0 3.8 48 14-73 214-261 (318)
235 PRK00093 GTP-binding protein D 95.7 0.011 2.5E-07 45.2 3.5 44 15-71 110-153 (435)
236 KOG0052|consensus 95.7 0.0056 1.2E-07 47.3 1.6 45 9-53 137-183 (391)
237 PRK05291 trmE tRNA modificatio 95.7 0.0077 1.7E-07 47.0 2.4 41 14-71 321-361 (449)
238 cd04115 Rab33B_Rab33A Rab33B/R 95.6 0.0074 1.6E-07 40.1 1.9 44 15-67 110-153 (170)
239 PRK09518 bifunctional cytidyla 95.5 0.019 4.1E-07 47.2 4.2 44 15-71 384-427 (712)
240 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 95.5 0.033 7.2E-07 39.7 4.8 51 15-70 106-166 (222)
241 PRK12739 elongation factor G; 95.5 0.023 5E-07 46.6 4.5 49 10-66 122-170 (691)
242 cd04162 Arl9_Arfrp2_like Arl9/ 95.4 0.0069 1.5E-07 40.4 1.2 44 14-64 99-144 (164)
243 PLN03071 GTP-binding nuclear p 95.4 0.013 2.9E-07 41.1 2.7 46 15-71 118-163 (219)
244 COG4917 EutP Ethanolamine util 95.4 0.033 7.1E-07 37.5 4.3 51 11-71 87-137 (148)
245 TIGR00484 EF-G translation elo 95.4 0.026 5.7E-07 46.2 4.5 49 10-66 124-172 (689)
246 KOG0078|consensus 95.3 0.015 3.2E-07 41.5 2.6 49 13-71 117-165 (207)
247 KOG3905|consensus 95.3 0.052 1.1E-06 41.9 5.6 54 10-69 219-279 (473)
248 PF03308 ArgK: ArgK protein; 95.2 0.046 9.9E-07 40.4 4.8 57 9-71 163-221 (266)
249 COG2262 HflX GTPases [General 95.0 0.023 5E-07 44.3 2.9 44 15-72 305-348 (411)
250 COG0218 Predicted GTPase [Gene 94.9 0.069 1.5E-06 38.0 4.9 55 11-71 133-188 (200)
251 KOG1143|consensus 94.8 0.061 1.3E-06 42.3 4.7 59 9-70 299-378 (591)
252 PRK11058 GTPase HflX; Provisio 94.8 0.038 8.3E-07 43.1 3.7 45 15-72 310-354 (426)
253 COG0370 FeoB Fe2+ transport sy 94.2 0.035 7.5E-07 45.6 2.4 49 11-70 106-154 (653)
254 COG2229 Predicted GTPase [Gene 94.0 0.075 1.6E-06 37.4 3.5 46 15-70 122-168 (187)
255 PF03029 ATP_bind_1: Conserved 94.0 0.044 9.5E-07 39.5 2.3 15 56-70 213-227 (238)
256 PF05783 DLIC: Dynein light in 94.0 0.11 2.4E-06 41.2 4.8 53 11-69 194-253 (472)
257 COG1163 DRG Predicted GTPase [ 94.0 0.075 1.6E-06 40.7 3.6 42 15-72 240-281 (365)
258 KOG0081|consensus 93.9 0.084 1.8E-06 37.0 3.6 48 15-71 125-172 (219)
259 KOG0092|consensus 93.8 0.044 9.5E-07 38.9 2.0 44 18-70 114-157 (200)
260 KOG0076|consensus 93.8 0.028 6.2E-07 39.5 1.0 49 16-70 128-177 (197)
261 PTZ00132 GTP-binding nuclear p 93.7 0.079 1.7E-06 36.7 3.2 45 15-70 114-158 (215)
262 KOG0073|consensus 93.6 0.14 3.1E-06 35.8 4.2 54 10-70 114-168 (185)
263 cd04178 Nucleostemin_like Nucl 93.6 0.11 2.3E-06 35.7 3.5 15 14-28 30-44 (172)
264 PRK07560 elongation factor EF- 93.5 0.12 2.5E-06 42.8 4.2 59 10-69 136-211 (731)
265 PF00071 Ras: Ras family; Int 93.4 0.06 1.3E-06 35.0 2.1 48 14-70 104-151 (162)
266 COG0486 ThdF Predicted GTPase 93.4 0.059 1.3E-06 42.5 2.3 45 14-72 324-368 (454)
267 KOG0463|consensus 92.0 0.39 8.5E-06 38.0 5.1 55 12-69 272-347 (641)
268 TIGR00450 mnmE_trmE_thdF tRNA 91.8 0.18 3.9E-06 39.5 3.1 39 15-69 311-349 (442)
269 PF08438 MMR_HSR1_C: GTPase of 91.6 0.19 4.1E-06 32.5 2.6 35 20-66 1-35 (109)
270 cd04168 TetM_like Tet(M)-like 91.4 0.35 7.5E-06 34.6 4.0 30 12-45 115-144 (237)
271 KOG0098|consensus 91.1 0.083 1.8E-06 37.7 0.6 46 17-71 114-159 (216)
272 cd01850 CDC_Septin CDC/Septin. 91.1 0.63 1.4E-05 34.1 5.2 33 15-49 144-176 (276)
273 KOG2484|consensus 91.0 0.51 1.1E-05 37.0 4.8 31 13-49 176-206 (435)
274 KOG0094|consensus 90.9 0.59 1.3E-05 33.6 4.7 46 16-70 130-175 (221)
275 KOG0072|consensus 90.7 0.44 9.6E-06 32.9 3.8 51 15-71 120-170 (182)
276 cd04169 RF3 RF3 subfamily. Pe 90.5 0.57 1.2E-05 34.2 4.5 30 12-45 122-151 (267)
277 KOG1532|consensus 90.5 0.48 1E-05 36.0 4.1 54 16-70 183-254 (366)
278 KOG0394|consensus 89.6 0.35 7.6E-06 34.4 2.7 49 16-70 120-168 (210)
279 KOG0093|consensus 89.5 0.19 4.1E-06 34.8 1.2 46 15-69 127-172 (193)
280 KOG0091|consensus 89.4 0.42 9.2E-06 33.6 2.9 47 17-72 119-165 (213)
281 cd04170 EF-G_bact Elongation f 89.2 0.91 2E-05 32.7 4.7 32 10-45 113-144 (268)
282 PLN00116 translation elongatio 88.8 0.4 8.7E-06 40.4 3.0 34 12-46 149-190 (843)
283 KOG1490|consensus 88.5 0.6 1.3E-05 37.9 3.6 54 12-71 279-332 (620)
284 KOG0097|consensus 88.3 0.47 1E-05 32.7 2.6 46 16-70 118-163 (215)
285 KOG0070|consensus 88.0 0.62 1.3E-05 32.7 3.0 16 31-46 97-112 (181)
286 KOG0395|consensus 87.9 0.49 1.1E-05 33.1 2.5 49 14-71 108-156 (196)
287 PTZ00416 elongation factor 2; 87.5 1.4 3.1E-05 37.1 5.4 34 12-46 143-184 (836)
288 KOG0086|consensus 87.4 0.45 9.8E-06 33.2 2.0 53 9-70 107-161 (214)
289 KOG0084|consensus 87.1 0.52 1.1E-05 33.6 2.2 46 16-70 116-162 (205)
290 KOG4146|consensus 87.1 1.2 2.6E-05 28.2 3.6 34 16-65 66-100 (101)
291 TIGR00503 prfC peptide chain r 86.5 0.86 1.9E-05 36.6 3.5 28 15-45 133-160 (527)
292 PF06858 NOG1: Nucleolar GTP-b 86.4 0.57 1.2E-05 27.0 1.8 14 12-25 45-58 (58)
293 COG0523 Putative GTPases (G3E 86.3 1.6 3.4E-05 33.1 4.6 36 18-62 149-184 (323)
294 KOG0087|consensus 85.8 0.65 1.4E-05 33.5 2.2 47 16-71 121-167 (222)
295 KOG1424|consensus 85.6 1.8 3.9E-05 35.1 4.8 45 13-68 204-248 (562)
296 cd04105 SR_beta Signal recogni 85.3 0.8 1.7E-05 31.8 2.5 15 14-28 109-123 (203)
297 cd04102 RabL3 RabL3 (Rab-like3 84.8 2.9 6.2E-05 29.2 5.1 53 15-72 130-182 (202)
298 PF02492 cobW: CobW/HypB/UreG, 84.4 0.61 1.3E-05 31.7 1.5 23 18-42 145-168 (178)
299 PRK00741 prfC peptide chain re 84.4 1.7 3.7E-05 34.9 4.3 32 10-45 128-159 (526)
300 COG1084 Predicted GTPase [Gene 84.1 1.5 3.3E-05 33.6 3.6 46 15-70 281-326 (346)
301 KOG1423|consensus 84.0 1.5 3.2E-05 33.7 3.5 18 55-72 246-263 (379)
302 KOG0088|consensus 83.9 1.1 2.3E-05 31.6 2.5 47 16-71 120-166 (218)
303 COG1161 Predicted GTPases [Gen 83.1 2.8 6E-05 31.5 4.7 51 11-71 58-108 (322)
304 KOG0083|consensus 81.9 0.49 1.1E-05 32.3 0.2 45 17-70 106-150 (192)
305 PF04670 Gtr1_RagA: Gtr1/RagA 81.7 5.7 0.00012 28.7 5.7 48 16-65 113-162 (232)
306 TIGR02475 CobW cobalamin biosy 81.3 2.5 5.4E-05 32.0 3.9 30 12-44 172-201 (341)
307 KOG0467|consensus 80.5 3.4 7.3E-05 35.1 4.6 54 16-69 126-206 (887)
308 KOG2423|consensus 76.1 1.7 3.6E-05 34.6 1.6 15 14-28 244-258 (572)
309 PF09439 SRPRB: Signal recogni 76.1 6.8 0.00015 27.3 4.5 16 13-28 111-126 (181)
310 COG0012 Predicted GTPase, prob 75.8 6 0.00013 30.7 4.5 55 9-71 201-255 (372)
311 KOG2485|consensus 75.0 3.5 7.7E-05 31.5 3.0 18 11-28 70-87 (335)
312 COG1908 FrhD Coenzyme F420-red 73.8 4.4 9.6E-05 26.9 2.9 62 9-70 49-112 (132)
313 KOG4252|consensus 73.6 1.5 3.3E-05 31.3 0.8 17 14-30 124-140 (246)
314 PRK13351 elongation factor G; 71.8 4.6 9.9E-05 33.2 3.2 32 10-45 122-153 (687)
315 PTZ00258 GTP-binding protein; 71.6 6.9 0.00015 30.4 4.0 50 11-68 217-268 (390)
316 COG0480 FusA Translation elong 71.3 5.5 0.00012 33.3 3.6 31 11-45 126-156 (697)
317 KOG0393|consensus 70.8 9.7 0.00021 27.1 4.3 51 15-70 110-169 (198)
318 KOG0075|consensus 70.1 6.8 0.00015 27.2 3.3 51 11-71 120-173 (186)
319 PRK12740 elongation factor G; 68.7 6 0.00013 32.3 3.3 31 11-45 110-140 (668)
320 PRK09601 GTP-binding protein Y 68.6 7.9 0.00017 29.9 3.8 51 10-70 195-247 (364)
321 PF11372 DUF3173: Domain of un 68.1 2.5 5.5E-05 24.4 0.7 43 21-63 4-51 (59)
322 KOG0071|consensus 65.7 4.9 0.00011 27.7 1.9 29 12-45 83-111 (180)
323 COG5131 URM1 Ubiquitin-like pr 63.7 14 0.00031 23.2 3.5 10 16-25 61-70 (96)
324 TIGR02836 spore_IV_A stage IV 63.4 15 0.00033 29.5 4.5 15 11-26 178-192 (492)
325 KOG2743|consensus 63.0 10 0.00022 29.3 3.3 23 19-43 216-238 (391)
326 PRK13505 formate--tetrahydrofo 60.9 23 0.00051 29.0 5.2 35 9-50 368-402 (557)
327 TIGR00490 aEF-2 translation el 60.5 8.9 0.00019 31.9 2.9 34 11-45 136-177 (720)
328 KOG0095|consensus 60.4 3.2 7E-05 28.9 0.3 46 17-71 115-160 (213)
329 PLN00023 GTP-binding protein; 58.5 10 0.00023 29.0 2.7 37 15-51 152-190 (334)
330 KOG1487|consensus 58.1 5.8 0.00013 30.1 1.3 41 15-71 232-272 (358)
331 COG4108 PrfC Peptide chain rel 55.1 17 0.00036 29.4 3.4 26 15-40 134-160 (528)
332 KOG1191|consensus 54.9 2 4.3E-05 34.7 -1.7 51 15-72 390-442 (531)
333 smart00053 DYNc Dynamin, GTPas 54.6 14 0.00029 26.8 2.7 15 15-29 193-207 (240)
334 KOG4423|consensus 53.4 17 0.00036 26.2 2.9 49 16-71 137-185 (229)
335 KOG0079|consensus 52.7 5 0.00011 27.9 0.2 47 16-71 114-160 (198)
336 KOG1707|consensus 51.9 7 0.00015 32.2 0.9 15 15-29 116-130 (625)
337 cd04170 EF-G_bact Elongation f 51.4 20 0.00043 25.7 3.1 16 54-69 240-255 (268)
338 PRK11537 putative GTP-binding 50.0 21 0.00045 26.8 3.2 11 18-28 154-164 (318)
339 PF05049 IIGP: Interferon-indu 47.4 21 0.00046 27.7 2.9 50 12-64 140-200 (376)
340 KOG1673|consensus 45.6 39 0.00085 23.7 3.7 50 17-71 127-177 (205)
341 KOG0447|consensus 44.4 26 0.00057 29.4 3.1 26 15-40 480-508 (980)
342 COG1100 GTPase SAR1 and relate 44.2 36 0.00078 23.0 3.4 15 15-29 112-126 (219)
343 PF02662 FlpD: Methyl-viologen 43.7 65 0.0014 20.8 4.4 60 9-68 48-109 (124)
344 cd01900 YchF YchF subfamily. 43.6 21 0.00046 26.4 2.3 51 11-71 192-244 (274)
345 COG3640 CooC CO dehydrogenase 43.5 15 0.00032 27.2 1.4 17 10-26 181-197 (255)
346 KOG2800|consensus 41.6 9.4 0.0002 29.4 0.2 10 1-10 297-306 (389)
347 KOG0080|consensus 40.2 16 0.00035 25.7 1.2 44 18-70 121-164 (209)
348 KOG0090|consensus 39.8 33 0.00072 25.1 2.7 15 14-28 145-159 (238)
349 KOG2486|consensus 39.3 6.8 0.00015 29.7 -0.8 59 12-73 247-309 (320)
350 PF08712 Nfu_N: Scaffold prote 37.7 36 0.00077 20.7 2.3 27 18-45 58-84 (87)
351 PF04317 DUF463: YcjX-like fam 37.6 74 0.0016 25.4 4.6 55 12-66 304-360 (443)
352 PF03193 DUF258: Protein of un 34.7 33 0.00071 23.4 2.0 27 40-71 3-29 (161)
353 cd01852 AIG1 AIG1 (avrRpt2-ind 34.1 74 0.0016 21.4 3.7 35 15-49 117-153 (196)
354 PF09547 Spore_IV_A: Stage IV 33.4 91 0.002 25.2 4.4 38 15-63 181-218 (492)
355 TIGR03172 probable selenium-de 32.7 71 0.0015 23.1 3.5 13 15-27 189-201 (232)
356 PF00735 Septin: Septin; Inte 32.0 93 0.002 22.9 4.1 35 13-49 141-175 (281)
357 KOG3886|consensus 31.9 71 0.0015 23.9 3.4 46 15-65 117-164 (295)
358 KOG0410|consensus 29.2 23 0.00049 27.7 0.5 15 57-71 318-332 (410)
359 KOG0077|consensus 28.3 1.9E+02 0.0041 20.5 4.9 15 14-28 121-135 (193)
360 PF10561 UPF0565: Uncharacteri 27.6 23 0.0005 26.8 0.3 14 1-14 237-250 (303)
361 KOG0468|consensus 27.4 24 0.00052 30.1 0.4 15 13-27 248-262 (971)
362 KOG1491|consensus 26.7 1.3E+02 0.0029 23.6 4.2 56 8-68 218-273 (391)
363 PF04380 BMFP: Membrane fusoge 26.6 73 0.0016 19.0 2.4 16 21-38 41-56 (79)
364 cd02035 ArsA ArsA ATPase funct 26.4 1.1E+02 0.0025 21.1 3.7 37 10-46 166-203 (217)
365 KOG0096|consensus 25.8 25 0.00055 25.3 0.2 46 15-72 115-161 (216)
366 smart00632 Aamy_C Aamy_C domai 24.6 93 0.002 18.2 2.6 24 2-26 3-28 (81)
367 cd04168 TetM_like Tet(M)-like 24.2 1E+02 0.0022 21.9 3.1 16 54-69 209-224 (237)
368 PHA02754 hypothetical protein; 23.7 1E+02 0.0023 17.9 2.5 20 31-50 13-32 (67)
369 cd01886 EF-G Elongation factor 23.6 88 0.0019 22.8 2.7 17 54-70 242-258 (270)
370 PF09582 AnfO_nitrog: Iron onl 23.1 1.5E+02 0.0033 21.0 3.8 86 4-94 8-103 (202)
371 PF00058 Ldl_recept_b: Low-den 22.8 22 0.00048 18.4 -0.4 9 1-9 3-11 (42)
372 PF13134 DUF3948: Protein of u 22.6 49 0.0011 16.9 0.9 12 17-28 5-16 (35)
373 KOG4230|consensus 21.0 1.4E+02 0.003 25.4 3.6 30 8-40 745-774 (935)
No 1
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=1.4e-25 Score=170.71 Aligned_cols=84 Identities=39% Similarity=0.795 Sum_probs=79.4
Q ss_pred eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCCCCCCCccccCchHH
Q psy15201 9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLD 88 (97)
Q Consensus 9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~g~tlle 88 (97)
|++|||+++||+|||||.++|+++||++++.++..+++..||++++++||||||+.|+|+.+.+.+ ++||+||||+|
T Consensus 140 a~tlGi~~lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s~~---~pWY~GpTLle 216 (428)
T COG5256 140 ARTLGIKQLIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKSEN---MPWYKGPTLLE 216 (428)
T ss_pred HHhcCCceEEEEEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccCcC---CcCccCChHHH
Confidence 577999999999999999999999999999999999999999988999999999999999999966 99999999999
Q ss_pred HhccccC
Q psy15201 89 VIGLSGL 95 (97)
Q Consensus 89 ~ld~~~~ 95 (97)
|||.++.
T Consensus 217 aLd~~~~ 223 (428)
T COG5256 217 ALDQLEP 223 (428)
T ss_pred HHhccCC
Confidence 9997754
No 2
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.90 E-value=1.1e-23 Score=158.56 Aligned_cols=83 Identities=33% Similarity=0.705 Sum_probs=77.4
Q ss_pred eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCCCCCCCccccCchHH
Q psy15201 9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLD 88 (97)
Q Consensus 9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~g~tlle 88 (97)
+.+|||+|+|++|||||+++|++++|++|+++...|.+++++. ...+||+||+.|+|+..+|.+ |+||+||||+|
T Consensus 134 ~sLLGIrhvvvAVNKmDLvdy~e~~F~~I~~dy~~fa~~L~~~--~~~~IPiSAl~GDNV~~~s~~---mpWY~GptLLe 208 (431)
T COG2895 134 ASLLGIRHVVVAVNKMDLVDYSEEVFEAIVADYLAFAAQLGLK--DVRFIPISALLGDNVVSKSEN---MPWYKGPTLLE 208 (431)
T ss_pred HHHhCCcEEEEEEeeecccccCHHHHHHHHHHHHHHHHHcCCC--cceEEechhccCCcccccccC---CCcccCccHHH
Confidence 4579999999999999999999999999999999999999884 569999999999999999987 99999999999
Q ss_pred HhccccCC
Q psy15201 89 VIGLSGLS 96 (97)
Q Consensus 89 ~ld~~~~~ 96 (97)
.|+++++.
T Consensus 209 ~LE~v~i~ 216 (431)
T COG2895 209 ILETVEIA 216 (431)
T ss_pred HHhhcccc
Confidence 99998763
No 3
>KOG0458|consensus
Probab=99.86 E-value=3.9e-22 Score=156.57 Aligned_cols=86 Identities=49% Similarity=0.833 Sum_probs=79.0
Q ss_pred eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHH-HHhCCCCCCceEEEeeeccCCCCCCCCCCCCCCCccccCchH
Q psy15201 9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFL-KQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLL 87 (97)
Q Consensus 9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l-~~~~~~~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~g~tll 87 (97)
++.|||.++||+|||||+++|+++||++|+..+..|| ++.||...++.+||||++.|+|+.+.+....+.+||+||||+
T Consensus 310 lr~Lgi~qlivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~~~~~~l~~WY~Gp~LL 389 (603)
T KOG0458|consen 310 LRSLGISQLIVAINKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKIEQENELSQWYKGPTLL 389 (603)
T ss_pred HHHcCcceEEEEeecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccccccchhhhhhhcCChHH
Confidence 4569999999999999999999999999999999999 778998778899999999999999986655778999999999
Q ss_pred HHhcccc
Q psy15201 88 DVIGLSG 94 (97)
Q Consensus 88 e~ld~~~ 94 (97)
++||++.
T Consensus 390 ~~id~~~ 396 (603)
T KOG0458|consen 390 SQIDSFK 396 (603)
T ss_pred HHHhhcc
Confidence 9999864
No 4
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.80 E-value=3.1e-19 Score=125.95 Aligned_cols=84 Identities=42% Similarity=0.807 Sum_probs=74.1
Q ss_pred eccCCCeEEEEEEcCCCC--CCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCCCCCCCccccCchH
Q psy15201 10 AVSGVNQLGVVINKLDTV--SWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLL 87 (97)
Q Consensus 10 ~~lGvk~~Iv~INK~D~v--~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~g~tll 87 (97)
+.+|++++|+++||||++ ++++++++++.++++.+++..++.....+++|+||++|.|+.+++.+ ++||+|+||+
T Consensus 133 ~~~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~~~~~~---~~w~~g~~l~ 209 (219)
T cd01883 133 RTLGVKQLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIEKSEN---MPWYKGPTLL 209 (219)
T ss_pred HHcCCCeEEEEEEccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCCcCCCC---CCCccCCcHH
Confidence 346889999999999998 35678899999999988888887656789999999999999999987 9999999999
Q ss_pred HHhccccCC
Q psy15201 88 DVIGLSGLS 96 (97)
Q Consensus 88 e~ld~~~~~ 96 (97)
|+|+++..+
T Consensus 210 ~~l~~~~~~ 218 (219)
T cd01883 210 EALDSLEPP 218 (219)
T ss_pred HHHhCCCCC
Confidence 999998754
No 5
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.79 E-value=2.8e-19 Score=138.26 Aligned_cols=84 Identities=37% Similarity=0.718 Sum_probs=76.4
Q ss_pred eeccCCCeEEEEEEcCC--CCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCCCCCCCccccCch
Q psy15201 9 SAVSGVNQLGVVINKLD--TVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCL 86 (97)
Q Consensus 9 ~~~lGvk~~Iv~INK~D--~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~g~tl 86 (97)
|+.+|++++|++||||| +++|++++++++.++++.+++..++++.++++||+||++|+|+.+++.. ++||+|+||
T Consensus 140 ~~~~gi~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~~~~~---~~Wy~G~tL 216 (446)
T PTZ00141 140 AFTLGVKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIEKSDN---MPWYKGPTL 216 (446)
T ss_pred HHHcCCCeEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCcccCCCC---CcccchHHH
Confidence 45689999999999999 6789999999999999999999998766799999999999999988866 999999999
Q ss_pred HHHhccccC
Q psy15201 87 LDVIGLSGL 95 (97)
Q Consensus 87 le~ld~~~~ 95 (97)
+++|++++.
T Consensus 217 ~~~l~~~~~ 225 (446)
T PTZ00141 217 LEALDTLEP 225 (446)
T ss_pred HHHHhCCCC
Confidence 999998753
No 6
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.78 E-value=3.1e-19 Score=138.04 Aligned_cols=83 Identities=34% Similarity=0.675 Sum_probs=75.7
Q ss_pred eccCCCeEEEEEEcCCCC--CCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCCCCCCCccccCchH
Q psy15201 10 AVSGVNQLGVVINKLDTV--SWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLL 87 (97)
Q Consensus 10 ~~lGvk~~Iv~INK~D~v--~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~g~tll 87 (97)
+.+|++++|+++||||++ +|++++++++.++++.++++.+|.+.++++||+||++|+|+.+++.. ++||+|+||+
T Consensus 141 ~~~gi~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~~~~~---~~Wy~g~tLl 217 (447)
T PLN00043 141 FTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTN---LDWYKGPTLL 217 (447)
T ss_pred HHcCCCcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccccccC---CcccchHHHH
Confidence 468999999999999987 57889999999999999999998777799999999999999998876 9999999999
Q ss_pred HHhccccC
Q psy15201 88 DVIGLSGL 95 (97)
Q Consensus 88 e~ld~~~~ 95 (97)
++||+++.
T Consensus 218 ~~l~~i~~ 225 (447)
T PLN00043 218 EALDQINE 225 (447)
T ss_pred HHHhhcCC
Confidence 99998753
No 7
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.75 E-value=7.4e-18 Score=118.01 Aligned_cols=80 Identities=36% Similarity=0.703 Sum_probs=69.5
Q ss_pred ccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCCCCCCCccccCchHHHh
Q psy15201 11 VSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVI 90 (97)
Q Consensus 11 ~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~g~tlle~l 90 (97)
..|++++|+++||+|++++++++++++..+++.+++..++. ..+++|+||++|.|+.+.+.+ ++||+|+||+|||
T Consensus 127 ~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~ii~iSA~~g~ni~~~~~~---~~w~~g~~~~~~~ 201 (208)
T cd04166 127 LLGIRHVVVAVNKMDLVDYSEEVFEEIVADYLAFAAKLGIE--DITFIPISALDGDNVVSRSEN---MPWYSGPTLLEHL 201 (208)
T ss_pred HcCCCcEEEEEEchhcccCCHHHHHHHHHHHHHHHHHcCCC--CceEEEEeCCCCCCCccCCCC---CCCCCCCcHHHHH
Confidence 45777889999999998777778888888998888877763 478999999999999999876 9999999999999
Q ss_pred ccccC
Q psy15201 91 GLSGL 95 (97)
Q Consensus 91 d~~~~ 95 (97)
|+++.
T Consensus 202 ~~~~~ 206 (208)
T cd04166 202 ETVPI 206 (208)
T ss_pred hcCCC
Confidence 99874
No 8
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.70 E-value=5.7e-17 Score=124.03 Aligned_cols=84 Identities=33% Similarity=0.699 Sum_probs=74.4
Q ss_pred eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCCCCCCCccccCchHH
Q psy15201 9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLD 88 (97)
Q Consensus 9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~g~tlle 88 (97)
++.+|++++|+++||+|++++++++++++.++++.+++..++.+...+++|+||++|+|+.+++.+ ++||+|+||++
T Consensus 134 ~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~~---~~wy~g~~L~~ 210 (425)
T PRK12317 134 ARTLGINQLIVAINKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSEN---MPWYNGPTLLE 210 (425)
T ss_pred HHHcCCCeEEEEEEccccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccccC---CCcccHHHHHH
Confidence 345788889999999999987788899999999999988888655689999999999999999876 99999999999
Q ss_pred HhccccC
Q psy15201 89 VIGLSGL 95 (97)
Q Consensus 89 ~ld~~~~ 95 (97)
+|++++.
T Consensus 211 ~l~~~~~ 217 (425)
T PRK12317 211 ALDNLKP 217 (425)
T ss_pred HHhcCCC
Confidence 9998764
No 9
>KOG0459|consensus
Probab=99.70 E-value=3.3e-17 Score=125.29 Aligned_cols=84 Identities=40% Similarity=0.793 Sum_probs=75.8
Q ss_pred eeccCCCeEEEEEEcCC--CCCCCHHHHHHHHHHHHHHHHHhCCCCC-CceEEEeeeccCCCCCCCCCCCCCCCccccCc
Q psy15201 9 SAVSGVNQLGVVINKLD--TVSWSQDRFQEIVTKLGAFLKQAGFRDS-DIEYVPCSGLTGENLTTPSQVPALTSWYSGPC 85 (97)
Q Consensus 9 ~~~lGvk~~Iv~INK~D--~v~~~~~~~~~i~~~l~~~l~~~~~~~~-~~~iipiSA~~G~ni~~~~~~~~~~~W~~g~t 85 (97)
|+++||+++|++||||| +++|+++|++++++.+..+++.++|++. +..++|+|+++|.|+.+... ..|+||+|++
T Consensus 212 akt~gv~~lVv~vNKMddPtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~--s~cpwy~gp~ 289 (501)
T KOG0459|consen 212 AKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD--SVCPWYKGPI 289 (501)
T ss_pred HHhhccceEEEEEEeccCCccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc--ccCCcccCCc
Confidence 57899999999999999 7889999999999999999999998754 58999999999999977654 3499999999
Q ss_pred hHHHhcccc
Q psy15201 86 LLDVIGLSG 94 (97)
Q Consensus 86 lle~ld~~~ 94 (97)
+++.||+++
T Consensus 290 fl~~ld~l~ 298 (501)
T KOG0459|consen 290 FLEYLDELP 298 (501)
T ss_pred cceehhccC
Confidence 999999865
No 10
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.69 E-value=8.2e-17 Score=123.05 Aligned_cols=82 Identities=32% Similarity=0.701 Sum_probs=72.2
Q ss_pred eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCCCCCCCccccCchHH
Q psy15201 9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLD 88 (97)
Q Consensus 9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~g~tlle 88 (97)
++.+|++++|+++||||++++++++++++++++..+++..++ .+.+++||||++|+|+.+++.. ++||+|+||++
T Consensus 128 ~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~iipiSA~~g~ni~~~~~~---~~wy~g~tL~~ 202 (406)
T TIGR02034 128 ASLLGIRHVVLAVNKMDLVDYDEEVFENIKKDYLAFAEQLGF--RDVTFIPLSALKGDNVVSRSES---MPWYSGPTLLE 202 (406)
T ss_pred HHHcCCCcEEEEEEecccccchHHHHHHHHHHHHHHHHHcCC--CCccEEEeecccCCCCcccccC---CCccchhHHHH
Confidence 345799999999999999987888999999999998888776 3679999999999999988765 99999999999
Q ss_pred HhccccC
Q psy15201 89 VIGLSGL 95 (97)
Q Consensus 89 ~ld~~~~ 95 (97)
+|++++.
T Consensus 203 ~L~~~~~ 209 (406)
T TIGR02034 203 ILETVEV 209 (406)
T ss_pred HHHhcCC
Confidence 9998754
No 11
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.68 E-value=1.4e-16 Score=111.42 Aligned_cols=79 Identities=22% Similarity=0.262 Sum_probs=68.3
Q ss_pred eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCCCCCCCccc-cCchH
Q psy15201 9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYS-GPCLL 87 (97)
Q Consensus 9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~-g~tll 87 (97)
++.+|++++|+++||||+++ ++++++++.+++..++++.++++++++|+|+||++|.|+.+ . ++||+ |+||+
T Consensus 113 ~~~~~~~~iIvviNK~D~~~-~~~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~~~---~---~~w~~~~~~l~ 185 (195)
T cd01884 113 ARQVGVPYIVVFLNKADMVD-DEELLELVEMEVRELLSKYGFDGDNTPIVRGSALKALEGDD---P---NKWVKKILELL 185 (195)
T ss_pred HHHcCCCcEEEEEeCCCCCC-cHHHHHHHHHHHHHHHHHhcccccCCeEEEeeCccccCCCC---C---CcchhcHhHHH
Confidence 44578888999999999985 57778888899999999999987789999999999999865 2 79998 79999
Q ss_pred HHhcccc
Q psy15201 88 DVIGLSG 94 (97)
Q Consensus 88 e~ld~~~ 94 (97)
++||+..
T Consensus 186 ~~l~~~~ 192 (195)
T cd01884 186 DALDSYI 192 (195)
T ss_pred HHHHhCC
Confidence 9999764
No 12
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.67 E-value=1.9e-16 Score=121.34 Aligned_cols=84 Identities=30% Similarity=0.635 Sum_probs=74.7
Q ss_pred eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCCCCCCCccccCchHH
Q psy15201 9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLD 88 (97)
Q Consensus 9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~g~tlle 88 (97)
++.+|++++|+++||+|++++++++++++.++++.+++..++++...+++|+||++|.|+.+.+.+ ++||+|++|++
T Consensus 136 ~~~~~~~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~~---~~w~~g~~l~~ 212 (426)
T TIGR00483 136 ARTLGINQLIVAINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSEN---TPWYKGKTLLE 212 (426)
T ss_pred HHHcCCCeEEEEEEChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccccC---CccccchHHHH
Confidence 345788899999999999988888999999999999998887666789999999999999998876 89999999999
Q ss_pred HhccccC
Q psy15201 89 VIGLSGL 95 (97)
Q Consensus 89 ~ld~~~~ 95 (97)
+|++++.
T Consensus 213 ~l~~~~~ 219 (426)
T TIGR00483 213 ALDALEP 219 (426)
T ss_pred HHhcCCC
Confidence 9998753
No 13
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.66 E-value=2.5e-16 Score=122.67 Aligned_cols=83 Identities=35% Similarity=0.633 Sum_probs=72.2
Q ss_pred eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCCCCCCCccccCchHH
Q psy15201 9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLD 88 (97)
Q Consensus 9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~g~tlle 88 (97)
+..+|++++|+++||||++++++++++++++++..+++..++. ...+++|+||++|+|+.++++. ++||+|+||++
T Consensus 155 ~~~lg~~~iIvvvNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~-~~~~iipvSA~~g~ni~~~~~~---~~wy~G~tLl~ 230 (474)
T PRK05124 155 ATLLGIKHLVVAVNKMDLVDYSEEVFERIREDYLTFAEQLPGN-LDIRFVPLSALEGDNVVSQSES---MPWYSGPTLLE 230 (474)
T ss_pred HHHhCCCceEEEEEeeccccchhHHHHHHHHHHHHHHHhcCCC-CCceEEEEEeecCCCccccccc---ccccchhhHHH
Confidence 4568899999999999999878889999999998888776642 3689999999999999998766 89999999999
Q ss_pred HhccccC
Q psy15201 89 VIGLSGL 95 (97)
Q Consensus 89 ~ld~~~~ 95 (97)
+|+.++.
T Consensus 231 ~L~~i~~ 237 (474)
T PRK05124 231 VLETVDI 237 (474)
T ss_pred HHhhcCC
Confidence 9998753
No 14
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.62 E-value=1.2e-15 Score=121.89 Aligned_cols=82 Identities=33% Similarity=0.690 Sum_probs=72.5
Q ss_pred eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCCCCCCCccccCchHH
Q psy15201 9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLD 88 (97)
Q Consensus 9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~g~tlle 88 (97)
++.+|++++|+++||||++++++++++++..++..+++..++ ++.+++||||++|.|+.+.+.. ++||.|+||++
T Consensus 152 ~~~~~~~~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~iipiSA~~g~ni~~~~~~---~~wy~g~tL~~ 226 (632)
T PRK05506 152 ASLLGIRHVVLAVNKMDLVDYDQEVFDEIVADYRAFAAKLGL--HDVTFIPISALKGDNVVTRSAR---MPWYEGPSLLE 226 (632)
T ss_pred HHHhCCCeEEEEEEecccccchhHHHHHHHHHHHHHHHHcCC--CCccEEEEecccCCCccccccC---CCcccHhHHHH
Confidence 345789999999999999987888999999999988888887 4578999999999999988765 89999999999
Q ss_pred HhccccC
Q psy15201 89 VIGLSGL 95 (97)
Q Consensus 89 ~ld~~~~ 95 (97)
+|+.++.
T Consensus 227 ~l~~~~~ 233 (632)
T PRK05506 227 HLETVEI 233 (632)
T ss_pred HHhcCCC
Confidence 9998764
No 15
>CHL00071 tufA elongation factor Tu
Probab=99.42 E-value=3.3e-13 Score=103.27 Aligned_cols=84 Identities=21% Similarity=0.287 Sum_probs=68.9
Q ss_pred eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCC--CCCCCcccc-Cc
Q psy15201 9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQV--PALTSWYSG-PC 85 (97)
Q Consensus 9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~--~~~~~W~~g-~t 85 (97)
++.+|++++|+++||||+++ .+++++.+++++..+++..+++.+..|++|+||++|.|+.+++.+ .+.++||++ ++
T Consensus 123 ~~~~g~~~iIvvvNK~D~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ 201 (409)
T CHL00071 123 AKQVGVPNIVVFLNKEDQVD-DEELLELVELEVRELLSKYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYN 201 (409)
T ss_pred HHHcCCCEEEEEEEccCCCC-HHHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhcccccccCccccccCCchhhhHHH
Confidence 45689988999999999986 466788888999999999888766799999999999999876542 112589985 99
Q ss_pred hHHHhccc
Q psy15201 86 LLDVIGLS 93 (97)
Q Consensus 86 lle~ld~~ 93 (97)
|+++|++.
T Consensus 202 ll~~l~~~ 209 (409)
T CHL00071 202 LMDAVDSY 209 (409)
T ss_pred HHHHHHhh
Confidence 99999874
No 16
>PLN03126 Elongation factor Tu; Provisional
Probab=99.35 E-value=2e-12 Score=101.14 Aligned_cols=84 Identities=19% Similarity=0.245 Sum_probs=68.1
Q ss_pred eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCC--CCCCCccc-cCc
Q psy15201 9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQV--PALTSWYS-GPC 85 (97)
Q Consensus 9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~--~~~~~W~~-g~t 85 (97)
+..+|++++|+++||||+++ .+++++.+.++++.+++..+|+.++++++|+||++|.|+...+.. .+..+||+ +++
T Consensus 192 ~~~~gi~~iIvvvNK~Dl~~-~~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~ 270 (478)
T PLN03126 192 AKQVGVPNMVVFLNKQDQVD-DEELLELVELEVRELLSSYEFPGDDIPIISGSALLALEALMENPNIKRGDNKWVDKIYE 270 (478)
T ss_pred HHHcCCCeEEEEEecccccC-HHHHHHHHHHHHHHHHHhcCCCcCcceEEEEEccccccccccccccccCCCchhhhHHH
Confidence 55689999999999999996 577788888999999999988767899999999999987532211 12258998 589
Q ss_pred hHHHhccc
Q psy15201 86 LLDVIGLS 93 (97)
Q Consensus 86 lle~ld~~ 93 (97)
|+++|+++
T Consensus 271 Ll~~l~~~ 278 (478)
T PLN03126 271 LMDAVDSY 278 (478)
T ss_pred HHHHHHHh
Confidence 99999863
No 17
>PRK00049 elongation factor Tu; Reviewed
Probab=99.32 E-value=4.1e-12 Score=96.99 Aligned_cols=77 Identities=19% Similarity=0.277 Sum_probs=64.2
Q ss_pred eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCCCCCCCcccc-CchH
Q psy15201 9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSG-PCLL 87 (97)
Q Consensus 9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~g-~tll 87 (97)
++.+|++.+|+++||||+++ ++++++.+..+++.+++..++++++.|++|+||++|.|- +.. ++||+| ++|+
T Consensus 123 ~~~~g~p~iiVvvNK~D~~~-~~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~---~~~---~~w~~~~~~ll 195 (396)
T PRK00049 123 ARQVGVPYIVVFLNKCDMVD-DEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEG---DDD---EEWEKKILELM 195 (396)
T ss_pred HHHcCCCEEEEEEeecCCcc-hHHHHHHHHHHHHHHHHhcCCCccCCcEEEeecccccCC---CCc---ccccccHHHHH
Confidence 45588887788999999986 566788888899999998888667799999999999872 333 899976 8999
Q ss_pred HHhcc
Q psy15201 88 DVIGL 92 (97)
Q Consensus 88 e~ld~ 92 (97)
++|++
T Consensus 196 ~~l~~ 200 (396)
T PRK00049 196 DAVDS 200 (396)
T ss_pred HHHHh
Confidence 99987
No 18
>PRK12735 elongation factor Tu; Reviewed
Probab=99.27 E-value=1.1e-11 Score=94.62 Aligned_cols=78 Identities=19% Similarity=0.268 Sum_probs=64.4
Q ss_pred eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCCCCCCCcccc-CchH
Q psy15201 9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSG-PCLL 87 (97)
Q Consensus 9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~g-~tll 87 (97)
++.+|++.+|+++||||+++ ++++++.+.++++.+++.+++.+++.+++|+||++|.|.. .. ++||++ ++|+
T Consensus 123 ~~~~gi~~iivvvNK~Dl~~-~~~~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~---~~---~~w~~~~~~Ll 195 (396)
T PRK12735 123 ARQVGVPYIVVFLNKCDMVD-DEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGD---DD---EEWEAKILELM 195 (396)
T ss_pred HHHcCCCeEEEEEEecCCcc-hHHHHHHHHHHHHHHHHHcCCCcCceeEEecchhccccCC---CC---CcccccHHHHH
Confidence 44579988888999999986 5667888888999999988886567999999999999962 22 789975 9999
Q ss_pred HHhccc
Q psy15201 88 DVIGLS 93 (97)
Q Consensus 88 e~ld~~ 93 (97)
++|++.
T Consensus 196 ~~l~~~ 201 (396)
T PRK12735 196 DAVDSY 201 (396)
T ss_pred HHHHhc
Confidence 999863
No 19
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.20 E-value=3.6e-11 Score=91.59 Aligned_cols=76 Identities=20% Similarity=0.257 Sum_probs=61.8
Q ss_pred eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCCCCCCCccc-cCchH
Q psy15201 9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYS-GPCLL 87 (97)
Q Consensus 9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~-g~tll 87 (97)
++.+|++++|+++||||+++ ++++++.+.++++.+++..++..++++++|+||++|.+- . ++||+ +++|+
T Consensus 123 ~~~~gi~~iIvvvNK~Dl~~-~~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~g-----~---~~~~~~~~~ll 193 (394)
T TIGR00485 123 ARQVGVPYIVVFLNKCDMVD-DEELLELVEMEVRELLSEYDFPGDDTPIIRGSALKALEG-----D---AEWEAKILELM 193 (394)
T ss_pred HHHcCCCEEEEEEEecccCC-HHHHHHHHHHHHHHHHHhcCCCccCccEEECcccccccc-----C---CchhHhHHHHH
Confidence 45689998889999999986 456777788899999988887655689999999998652 1 58997 49999
Q ss_pred HHhccc
Q psy15201 88 DVIGLS 93 (97)
Q Consensus 88 e~ld~~ 93 (97)
++|+++
T Consensus 194 ~~l~~~ 199 (394)
T TIGR00485 194 DAVDEY 199 (394)
T ss_pred HHHHhc
Confidence 999864
No 20
>PRK12736 elongation factor Tu; Reviewed
Probab=99.16 E-value=7.8e-11 Score=89.87 Aligned_cols=75 Identities=23% Similarity=0.321 Sum_probs=61.6
Q ss_pred eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCCCCCCCcccc-CchH
Q psy15201 9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSG-PCLL 87 (97)
Q Consensus 9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~g-~tll 87 (97)
++.+|++++|+++||||+++ ++++++.+.++++.+++..++.+++.+++|+||++|.+- . .+||.+ .+|+
T Consensus 123 ~~~~g~~~~IvviNK~D~~~-~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~-----~---~~~~~~i~~Ll 193 (394)
T PRK12736 123 ARQVGVPYLVVFLNKVDLVD-DEELLELVEMEVRELLSEYDFPGDDIPVIRGSALKALEG-----D---PKWEDAIMELM 193 (394)
T ss_pred HHHcCCCEEEEEEEecCCcc-hHHHHHHHHHHHHHHHHHhCCCcCCccEEEeeccccccC-----C---CcchhhHHHHH
Confidence 45589988999999999985 466777788899999998888666789999999999642 1 589965 8999
Q ss_pred HHhcc
Q psy15201 88 DVIGL 92 (97)
Q Consensus 88 e~ld~ 92 (97)
++|+.
T Consensus 194 ~~l~~ 198 (394)
T PRK12736 194 DAVDE 198 (394)
T ss_pred HHHHH
Confidence 98875
No 21
>PLN03127 Elongation factor Tu; Provisional
Probab=98.97 E-value=1.4e-09 Score=84.61 Aligned_cols=76 Identities=24% Similarity=0.281 Sum_probs=58.7
Q ss_pred eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeecc---CCCCCCCCCCCCCCCccccCc
Q psy15201 9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLT---GENLTTPSQVPALTSWYSGPC 85 (97)
Q Consensus 9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~---G~ni~~~~~~~~~~~W~~g~t 85 (97)
++.+|++++|+++||||+++ ++++++.+.++++.+++..+++.+.+|++|+||+. |.|.. ..|..+++
T Consensus 172 ~~~~gip~iIvviNKiDlv~-~~~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~--------~~~~~i~~ 242 (447)
T PLN03127 172 ARQVGVPSLVVFLNKVDVVD-DEELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDE--------IGKNAILK 242 (447)
T ss_pred HHHcCCCeEEEEEEeeccCC-HHHHHHHHHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcc--------cccchHHH
Confidence 55689988999999999996 45677777778888888888866679999999875 44421 24556789
Q ss_pred hHHHhccc
Q psy15201 86 LLDVIGLS 93 (97)
Q Consensus 86 lle~ld~~ 93 (97)
|+++|++.
T Consensus 243 Ll~~l~~~ 250 (447)
T PLN03127 243 LMDAVDEY 250 (447)
T ss_pred HHHHHHHh
Confidence 99998763
No 22
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.93 E-value=2.2e-09 Score=83.79 Aligned_cols=58 Identities=17% Similarity=0.259 Sum_probs=46.0
Q ss_pred eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
+..+|++++|+++||||+++ .++.++..++++.+++.... ...+++|+||++|+|+..
T Consensus 166 ~~~lgi~~iIVvlNKiDlv~--~~~~~~~~~ei~~~l~~~~~--~~~~iipVSA~~G~nI~~ 223 (460)
T PTZ00327 166 VEIMKLKHIIILQNKIDLVK--EAQAQDQYEEIRNFVKGTIA--DNAPIIPISAQLKYNIDV 223 (460)
T ss_pred HHHcCCCcEEEEEecccccC--HHHHHHHHHHHHHHHHhhcc--CCCeEEEeeCCCCCCHHH
Confidence 45699999999999999984 56667777777777765432 468999999999999844
No 23
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.87 E-value=6.4e-09 Score=71.37 Aligned_cols=57 Identities=28% Similarity=0.508 Sum_probs=46.3
Q ss_pred eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHH-HHHHHhCCCC-CCceEEEeeeccCCCCC
Q psy15201 9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLG-AFLKQAGFRD-SDIEYVPCSGLTGENLT 69 (97)
Q Consensus 9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~-~~l~~~~~~~-~~~~iipiSA~~G~ni~ 69 (97)
++.++++ +|+++||||++ +.+++++.+++. .+++..+++. ...|++|+||++|.|+.
T Consensus 118 ~~~~~~p-~ivvlNK~D~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~ 176 (188)
T PF00009_consen 118 LRELGIP-IIVVLNKMDLI---EKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGID 176 (188)
T ss_dssp HHHTT-S-EEEEEETCTSS---HHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHH
T ss_pred ccccccc-eEEeeeeccch---hhhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHH
Confidence 4567887 99999999998 678888888887 5777777764 36899999999999985
No 24
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=1.1e-08 Score=77.30 Aligned_cols=57 Identities=25% Similarity=0.381 Sum_probs=49.0
Q ss_pred eccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 10 AVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 10 ~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
..+|++++|++-||+|++ +.++..+-.+++.+|++..-. ++.|||||||.++.|++.
T Consensus 136 eIigik~iiIvQNKIDlV--~~E~AlE~y~qIk~FvkGt~A--e~aPIIPiSA~~~~NIDa 192 (415)
T COG5257 136 EIIGIKNIIIVQNKIDLV--SRERALENYEQIKEFVKGTVA--ENAPIIPISAQHKANIDA 192 (415)
T ss_pred hhhccceEEEEeccccee--cHHHHHHHHHHHHHHhccccc--CCCceeeehhhhccCHHH
Confidence 458999999999999999 578888888999999986543 578999999999999854
No 25
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.65 E-value=5.7e-08 Score=78.17 Aligned_cols=59 Identities=22% Similarity=0.398 Sum_probs=49.0
Q ss_pred eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
++.+|++++|||+||+|+++ +++++++++++..+++..++ ...+++|+||.+|.|+.+.
T Consensus 99 l~~lgi~~iIVVlNKiDlv~--~~~~~~v~~ei~~~l~~~~~--~~~~ii~VSA~tG~gI~~L 157 (614)
T PRK10512 99 LQLTGNPMLTVALTKADRVD--EARIAEVRRQVKAVLREYGF--AEAKLFVTAATEGRGIDAL 157 (614)
T ss_pred HHHcCCCeEEEEEECCccCC--HHHHHHHHHHHHHHHHhcCC--CCCcEEEEeCCCCCCCHHH
Confidence 45689998999999999984 67888888899888877665 3579999999999998554
No 26
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.62 E-value=9.2e-08 Score=76.50 Aligned_cols=61 Identities=20% Similarity=0.235 Sum_probs=50.0
Q ss_pred eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCC
Q psy15201 9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72 (97)
Q Consensus 9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~ 72 (97)
++.+|++++|+++||+|+++ +++++++.+++..+++..++. ...+++|+||++|.|+.+..
T Consensus 98 l~~lgi~~iIVVlNK~Dlv~--~~~~~~~~~ei~~~l~~~~~~-~~~~ii~vSA~tG~GI~eL~ 158 (581)
T TIGR00475 98 LDLLGIPHTIVVITKADRVN--EEEIKRTEMFMKQILNSYIFL-KNAKIFKTSAKTGQGIGELK 158 (581)
T ss_pred HHHcCCCeEEEEEECCCCCC--HHHHHHHHHHHHHHHHHhCCC-CCCcEEEEeCCCCCCchhHH
Confidence 45689998999999999984 677777888888888776652 25799999999999997754
No 27
>KOG0460|consensus
Probab=98.53 E-value=1.9e-07 Score=71.22 Aligned_cols=78 Identities=22% Similarity=0.280 Sum_probs=60.7
Q ss_pred eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCCCCCCCccccCchHH
Q psy15201 9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLD 88 (97)
Q Consensus 9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~g~tlle 88 (97)
||+.||+++||.+||.|+++ +++.++.+.-+++++|...+|+.++.|+|.-||+-.-.=.+++-. --.-.-|++
T Consensus 165 ArQVGV~~ivvfiNKvD~V~-d~e~leLVEmE~RElLse~gf~Gd~~PvI~GSAL~ALeg~~peig-----~~aI~kLld 238 (449)
T KOG0460|consen 165 ARQVGVKHIVVFINKVDLVD-DPEMLELVEMEIRELLSEFGFDGDNTPVIRGSALCALEGRQPEIG-----LEAIEKLLD 238 (449)
T ss_pred HHHcCCceEEEEEecccccC-CHHHHHHHHHHHHHHHHHcCCCCCCCCeeecchhhhhcCCCcccc-----HHHHHHHHH
Confidence 78899999999999999997 688999999999999999999999999999888754322222211 001245778
Q ss_pred Hhcc
Q psy15201 89 VIGL 92 (97)
Q Consensus 89 ~ld~ 92 (97)
|+|+
T Consensus 239 avDs 242 (449)
T KOG0460|consen 239 AVDS 242 (449)
T ss_pred HHhc
Confidence 8776
No 28
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.50 E-value=1.9e-07 Score=65.03 Aligned_cols=58 Identities=21% Similarity=0.296 Sum_probs=41.6
Q ss_pred eccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 10 AVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 10 ~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
+..+++++|+++||+|+++ ...+.+..++++.+++.... ...+++|+||++|+|+.+.
T Consensus 133 ~~~~~~~iiivvNK~Dl~~--~~~~~~~~~~i~~~~~~~~~--~~~~i~~vSA~~g~gi~~L 190 (203)
T cd01888 133 EIMGLKHIIIVQNKIDLVK--EEQALENYEQIKKFVKGTIA--ENAPIIPISAQLKYNIDVL 190 (203)
T ss_pred HHcCCCcEEEEEEchhccC--HHHHHHHHHHHHHHHhcccc--CCCcEEEEeCCCCCCHHHH
Confidence 3467788999999999984 44455555666666653321 2478999999999998654
No 29
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=3.7e-07 Score=68.56 Aligned_cols=75 Identities=21% Similarity=0.323 Sum_probs=60.9
Q ss_pred eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCCCCCCCccc-cCchH
Q psy15201 9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYS-GPCLL 87 (97)
Q Consensus 9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~-g~tll 87 (97)
+++.|++++|+.+||+|+++ ++++++.+..+++++|..++|+.++.||+--||+..-.- . .+|.. -..|+
T Consensus 123 arqvGvp~ivvflnK~Dmvd-d~ellelVemEvreLLs~y~f~gd~~Pii~gSal~ale~-----~---~~~~~~i~eLm 193 (394)
T COG0050 123 ARQVGVPYIVVFLNKVDMVD-DEELLELVEMEVRELLSEYGFPGDDTPIIRGSALKALEG-----D---AKWEAKIEELM 193 (394)
T ss_pred hhhcCCcEEEEEEecccccC-cHHHHHHHHHHHHHHHHHcCCCCCCcceeechhhhhhcC-----C---cchHHHHHHHH
Confidence 67899999999999999998 799999999999999999999888999999888764321 1 34653 25566
Q ss_pred HHhcc
Q psy15201 88 DVIGL 92 (97)
Q Consensus 88 e~ld~ 92 (97)
+|+|+
T Consensus 194 ~avd~ 198 (394)
T COG0050 194 DAVDS 198 (394)
T ss_pred HHHHh
Confidence 77764
No 30
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.46 E-value=3.6e-07 Score=59.83 Aligned_cols=57 Identities=25% Similarity=0.373 Sum_probs=40.9
Q ss_pred ccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 11 VSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 11 ~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
..|++++|+++||+|+.+ +.+.....+++...++..+. ...+++|+||.+|.|+.+.
T Consensus 101 ~~~~~~~ilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~v~~l 157 (164)
T cd04171 101 LLGIKRGLVVLTKADLVD--EDWLELVEEEIRELLAGTFL--ADAPIFPVSAVTGEGIEEL 157 (164)
T ss_pred HhCCCcEEEEEECccccC--HHHHHHHHHHHHHHHHhcCc--CCCcEEEEeCCCCcCHHHH
Confidence 357778999999999974 33445555666666654332 2479999999999998653
No 31
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.39 E-value=7.5e-07 Score=68.32 Aligned_cols=58 Identities=24% Similarity=0.414 Sum_probs=40.8
Q ss_pred eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
++.+|++++|+++||+|+++ .+...+..+++..+++... ....+++|+||++|+|+.+
T Consensus 129 l~~~gi~~iIVvvNK~Dl~~--~~~~~~~~~~i~~~l~~~~--~~~~~ii~vSA~~g~gi~~ 186 (406)
T TIGR03680 129 LEIIGIKNIVIVQNKIDLVS--KEKALENYEEIKEFVKGTV--AENAPIIPVSALHNANIDA 186 (406)
T ss_pred HHHcCCCeEEEEEEccccCC--HHHHHHHHHHHHhhhhhcc--cCCCeEEEEECCCCCChHH
Confidence 34688999999999999985 3333333455555554332 1357999999999999844
No 32
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.32 E-value=2.3e-06 Score=58.04 Aligned_cols=50 Identities=18% Similarity=0.242 Sum_probs=37.9
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLT 69 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~ 69 (97)
.++++++||+|+.+ ++..++..++++..++..+ ...+++++||++|+|+.
T Consensus 130 ~pviiv~nK~D~~~--~~~~~~~~~~i~~~l~~~~---~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 130 IPVLIVLTKADKLK--KSELNKQLKKIKKALKKDA---DDPSVQLFSSLKKTGID 179 (179)
T ss_pred CCEEEEEECcccCC--HHHHHHHHHHHHHHHhhcc---CCCceEEEECCCCCCCC
Confidence 36899999999974 4555666777777776543 23689999999999973
No 33
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.32 E-value=1.1e-06 Score=68.46 Aligned_cols=53 Identities=30% Similarity=0.320 Sum_probs=45.3
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
+++|+++||||+++.++...++.++++...+..++| .|+++|||++|.++.+.
T Consensus 290 ~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~----a~i~~iSA~~~~~i~~l 342 (444)
T COG1160 290 RGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDF----APIVFISALTGQGLDKL 342 (444)
T ss_pred CCeEEEEEccccCCchhhHHHHHHHHHHHHhccccC----CeEEEEEecCCCChHHH
Confidence 468999999999976667888888999888877776 89999999999998654
No 34
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.31 E-value=1.1e-06 Score=60.32 Aligned_cols=57 Identities=23% Similarity=0.326 Sum_probs=37.1
Q ss_pred cCCCeEEEEEEcCCCCCCC--HHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 12 SGVNQLGVVINKLDTVSWS--QDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 12 lGvk~~Iv~INK~D~v~~~--~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.|+ ++++++||+|+++.. +...+++++++...+...++ ...+++|+||++|.|+.+.
T Consensus 119 ~~~-~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~vi~iSa~~g~gi~~L 177 (192)
T cd01889 119 LCK-KLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRF--KNSPIIPVSAKPGGGEAEL 177 (192)
T ss_pred cCC-CEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCc--CCCCEEEEeccCCCCHHHH
Confidence 455 789999999998421 12234444444444433333 3579999999999999653
No 35
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.29 E-value=1e-06 Score=62.80 Aligned_cols=60 Identities=27% Similarity=0.369 Sum_probs=44.9
Q ss_pred eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCC---------------------CCCceEEEeeeccCCC
Q psy15201 9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFR---------------------DSDIEYVPCSGLTGEN 67 (97)
Q Consensus 9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~---------------------~~~~~iipiSA~~G~n 67 (97)
+..+|++ +|+++||+|++ +++++.+..+++..+++..++. ...+|++++||.+|+|
T Consensus 134 l~~~~ip-~ivvvNK~D~~--~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~G 210 (224)
T cd04165 134 ALALNIP-VFVVVTKIDLA--PANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEG 210 (224)
T ss_pred HHHcCCC-EEEEEECcccc--CHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccC
Confidence 3457775 89999999997 4778888888888887643321 1235999999999999
Q ss_pred CCCC
Q psy15201 68 LTTP 71 (97)
Q Consensus 68 i~~~ 71 (97)
+.+.
T Consensus 211 i~~L 214 (224)
T cd04165 211 LDLL 214 (224)
T ss_pred HHHH
Confidence 8653
No 36
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.28 E-value=2.1e-06 Score=58.94 Aligned_cols=57 Identities=25% Similarity=0.268 Sum_probs=38.9
Q ss_pred cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCC--CceEEEeeeccCCCCCCCC
Q psy15201 12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDS--DIEYVPCSGLTGENLTTPS 72 (97)
Q Consensus 12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~--~~~iipiSA~~G~ni~~~~ 72 (97)
.++ ++++++||+|+.+ .+..++.+++..+++..+...+ ..+++++||++|.|+.+.+
T Consensus 116 ~~~-p~iiv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~~ 174 (194)
T cd01891 116 LGL-KPIVVINKIDRPD---ARPEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNLE 174 (194)
T ss_pred cCC-CEEEEEECCCCCC---CCHHHHHHHHHHHHHHhCCccccCccCEEEeehhccccccccc
Confidence 455 4788999999974 2334445566666554443222 4799999999999996653
No 37
>KOG1145|consensus
Probab=98.27 E-value=1e-06 Score=70.43 Aligned_cols=58 Identities=29% Similarity=0.457 Sum_probs=41.8
Q ss_pred ceeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHH---HHHHhCCCCCCceEEEeeeccCCCCCCCC
Q psy15201 8 KSAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGA---FLKQAGFRDSDIEYVPCSGLTGENLTTPS 72 (97)
Q Consensus 8 ~~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~---~l~~~~~~~~~~~iipiSA~~G~ni~~~~ 72 (97)
||+..+| ++||+|||+|..+.+.++. +.++.. .++.+| .++++|||||++|+|++.+.
T Consensus 248 hAk~A~V-piVvAinKiDkp~a~pekv---~~eL~~~gi~~E~~G---GdVQvipiSAl~g~nl~~L~ 308 (683)
T KOG1145|consen 248 HAKSANV-PIVVAINKIDKPGANPEKV---KRELLSQGIVVEDLG---GDVQVIPISALTGENLDLLE 308 (683)
T ss_pred HHHhcCC-CEEEEEeccCCCCCCHHHH---HHHHHHcCccHHHcC---CceeEEEeecccCCChHHHH
Confidence 7788888 6999999999876444443 333322 334444 47999999999999997654
No 38
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.26 E-value=5.6e-07 Score=71.02 Aligned_cols=56 Identities=30% Similarity=0.527 Sum_probs=40.5
Q ss_pred ceeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCC----CCCceEEEeeeccCCCCCCC
Q psy15201 8 KSAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFR----DSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 8 ~~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~----~~~~~iipiSA~~G~ni~~~ 71 (97)
|||.+|+ |+||++||+|+.+.+.. .++.+++++ ++. ...+.++|+||++|+|++++
T Consensus 102 hak~a~v-P~iVAiNKiDk~~~np~---~v~~el~~~----gl~~E~~gg~v~~VpvSA~tg~Gi~eL 161 (509)
T COG0532 102 HAKAAGV-PIVVAINKIDKPEANPD---KVKQELQEY----GLVPEEWGGDVIFVPVSAKTGEGIDEL 161 (509)
T ss_pred HHHHCCC-CEEEEEecccCCCCCHH---HHHHHHHHc----CCCHhhcCCceEEEEeeccCCCCHHHH
Confidence 7888999 69999999999864333 333343332 332 24589999999999999765
No 39
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.19 E-value=2.7e-06 Score=56.80 Aligned_cols=56 Identities=29% Similarity=0.421 Sum_probs=41.4
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCC---------CCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGF---------RDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~---------~~~~~~iipiSA~~G~ni~~~ 71 (97)
..++++++||+|+.. ++.+....++++..++..+. .+...+++|+||++|.|+.+.
T Consensus 114 ~~~i~iv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l 178 (189)
T cd00881 114 GLPIIVAINKIDRVG--EEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEEL 178 (189)
T ss_pred CCCeEEEEECCCCcc--hhcHHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHH
Confidence 467999999999985 45555566667766655442 234689999999999998653
No 40
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.19 E-value=2.9e-06 Score=65.37 Aligned_cols=57 Identities=26% Similarity=0.426 Sum_probs=39.6
Q ss_pred eccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 10 AVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 10 ~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
+.+|++++|+++||+|+++ +++..+..+++..+++... ....+++|+||++|.|+.+
T Consensus 135 ~~~~i~~iiVVlNK~Dl~~--~~~~~~~~~~i~~~l~~~~--~~~~~ii~vSA~~g~gI~~ 191 (411)
T PRK04000 135 DIIGIKNIVIVQNKIDLVS--KERALENYEQIKEFVKGTV--AENAPIIPVSALHKVNIDA 191 (411)
T ss_pred HHcCCCcEEEEEEeecccc--chhHHHHHHHHHHHhcccc--CCCCeEEEEECCCCcCHHH
Confidence 4578889999999999985 2333333445555554321 1357999999999999854
No 41
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.17 E-value=2.5e-06 Score=65.10 Aligned_cols=52 Identities=27% Similarity=0.243 Sum_probs=40.1
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
+++|+++||+|+++ +++.++++.+++...+...+ ..+++++||++|.|+.+.
T Consensus 284 ~~iiiv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~----~~~vi~~SA~~g~~v~~l 335 (429)
T TIGR03594 284 KALVIVVNKWDLVK-DEKTREEFKKELRRKLPFLD----FAPIVFISALTGQGVDKL 335 (429)
T ss_pred CcEEEEEECcccCC-CHHHHHHHHHHHHHhcccCC----CCceEEEeCCCCCCHHHH
Confidence 57999999999984 46667777777766554333 379999999999999754
No 42
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.07 E-value=6e-06 Score=54.03 Aligned_cols=52 Identities=25% Similarity=0.261 Sum_probs=36.7
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
+++|+++||+|+.+..+...+++.+.+...+... ...+++++||.+|.|+.+
T Consensus 114 ~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~~i~~ 165 (174)
T cd01895 114 KALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFL----DYAPIVFISALTGQGVDK 165 (174)
T ss_pred CCEEEEEeccccCCccHHHHHHHHHHHHhhcccc----cCCceEEEeccCCCCHHH
Confidence 5789999999998643345555555555444221 237899999999999865
No 43
>PRK00093 GTP-binding protein Der; Reviewed
Probab=97.98 E-value=9.1e-06 Score=62.23 Aligned_cols=51 Identities=27% Similarity=0.287 Sum_probs=38.8
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
+++|+++||+|+.+ ++..+++.+++...+.... ..+++++||++|.|+.+.
T Consensus 285 ~~~ivv~NK~Dl~~--~~~~~~~~~~~~~~l~~~~----~~~i~~~SA~~~~gv~~l 335 (435)
T PRK00093 285 RALVIVVNKWDLVD--EKTMEEFKKELRRRLPFLD----YAPIVFISALTGQGVDKL 335 (435)
T ss_pred CcEEEEEECccCCC--HHHHHHHHHHHHHhccccc----CCCEEEEeCCCCCCHHHH
Confidence 57999999999983 5556666666665554333 479999999999999754
No 44
>PRK04004 translation initiation factor IF-2; Validated
Probab=97.97 E-value=1.2e-05 Score=64.59 Aligned_cols=61 Identities=28% Similarity=0.450 Sum_probs=42.3
Q ss_pred eccCCCeEEEEEEcCCCC-CCC------------------HHHHHHHHHHHHHHHHHhCCCC----------CCceEEEe
Q psy15201 10 AVSGVNQLGVVINKLDTV-SWS------------------QDRFQEIVTKLGAFLKQAGFRD----------SDIEYVPC 60 (97)
Q Consensus 10 ~~lGvk~~Iv~INK~D~v-~~~------------------~~~~~~i~~~l~~~l~~~~~~~----------~~~~iipi 60 (97)
+..+++ +|+++||+|++ .|. +++|++...++..++...++.+ .+++++|+
T Consensus 120 ~~~~vp-iIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpi 198 (586)
T PRK04004 120 KRRKTP-FVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPV 198 (586)
T ss_pred HHcCCC-EEEEEECcCCchhhhhhcCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeec
Confidence 345664 89999999986 343 3345555555555666556543 35899999
Q ss_pred eeccCCCCCCC
Q psy15201 61 SGLTGENLTTP 71 (97)
Q Consensus 61 SA~~G~ni~~~ 71 (97)
||++|.|+.+.
T Consensus 199 SA~tGeGi~dL 209 (586)
T PRK04004 199 SAKTGEGIPDL 209 (586)
T ss_pred cCCCCCChHHH
Confidence 99999999654
No 45
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=97.90 E-value=6.5e-06 Score=54.37 Aligned_cols=53 Identities=23% Similarity=0.218 Sum_probs=33.5
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|+++||+|+.+ ....+++.+.+....+..+. ...+++++||++|.|+.+.
T Consensus 108 ~p~ilv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~g~gv~e~ 160 (167)
T cd04160 108 VPLLILANKQDLPD--ALSVEEIKEVFQDKAEEIGR--RDCLVLPVSALEGTGVREG 160 (167)
T ss_pred CCEEEEEEcccccc--CCCHHHHHHHhccccccccC--CceEEEEeeCCCCcCHHHH
Confidence 46999999999864 22223333333333222222 3479999999999998653
No 46
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=97.85 E-value=2.2e-05 Score=65.11 Aligned_cols=58 Identities=31% Similarity=0.448 Sum_probs=37.8
Q ss_pred ceeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHH---HHHHhCCCCCCceEEEeeeccCCCCCCCC
Q psy15201 8 KSAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGA---FLKQAGFRDSDIEYVPCSGLTGENLTTPS 72 (97)
Q Consensus 8 ~~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~---~l~~~~~~~~~~~iipiSA~~G~ni~~~~ 72 (97)
+++..|++ +||++||||+.+++.++ +..++.. +.+..+ .+++++|+||++|.|+.+.-
T Consensus 384 ~a~~~~vP-iIVviNKiDl~~a~~e~---V~~eL~~~~~~~e~~g---~~vp~vpvSAktG~GI~eLl 444 (787)
T PRK05306 384 HAKAAGVP-IIVAINKIDKPGANPDR---VKQELSEYGLVPEEWG---GDTIFVPVSAKTGEGIDELL 444 (787)
T ss_pred HHHhcCCc-EEEEEECccccccCHHH---HHHHHHHhcccHHHhC---CCceEEEEeCCCCCCchHHH
Confidence 35567775 99999999997644333 3333322 112222 24799999999999997653
No 47
>PRK14845 translation initiation factor IF-2; Provisional
Probab=97.81 E-value=3.6e-05 Score=65.48 Aligned_cols=62 Identities=29% Similarity=0.443 Sum_probs=38.3
Q ss_pred eccCCCeEEEEEEcCCCCC-CC---------------HHHHHHHHHHHHHH---HHHhCCCC----------CCceEEEe
Q psy15201 10 AVSGVNQLGVVINKLDTVS-WS---------------QDRFQEIVTKLGAF---LKQAGFRD----------SDIEYVPC 60 (97)
Q Consensus 10 ~~lGvk~~Iv~INK~D~v~-~~---------------~~~~~~i~~~l~~~---l~~~~~~~----------~~~~iipi 60 (97)
+..++ ++|+++||+|+++ |. +...+++..++..+ +...|+.+ ..++++|+
T Consensus 575 k~~~i-PiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpV 653 (1049)
T PRK14845 575 RQYKT-PFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPV 653 (1049)
T ss_pred HHcCC-CEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEE
Confidence 34555 6999999999973 43 11223332222222 33344432 36899999
Q ss_pred eeccCCCCCCCC
Q psy15201 61 SGLTGENLTTPS 72 (97)
Q Consensus 61 SA~~G~ni~~~~ 72 (97)
||.+|+|++.+.
T Consensus 654 SA~tGeGId~Ll 665 (1049)
T PRK14845 654 SAKTGEGIPELL 665 (1049)
T ss_pred EcCCCCCHHHHH
Confidence 999999997653
No 48
>PRK03003 GTP-binding protein Der; Reviewed
Probab=97.79 E-value=2.7e-05 Score=60.83 Aligned_cols=52 Identities=25% Similarity=0.178 Sum_probs=35.3
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~ 72 (97)
+++|+|+||+|+++ .++...+..++...+.... ..+++++||++|.|+.+.-
T Consensus 323 ~piIiV~NK~Dl~~--~~~~~~~~~~i~~~l~~~~----~~~~~~~SAk~g~gv~~lf 374 (472)
T PRK03003 323 RALVLAFNKWDLVD--EDRRYYLEREIDRELAQVP----WAPRVNISAKTGRAVDKLV 374 (472)
T ss_pred CCEEEEEECcccCC--hhHHHHHHHHHHHhcccCC----CCCEEEEECCCCCCHHHHH
Confidence 47999999999985 2333334444444333222 3689999999999997653
No 49
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.76 E-value=3e-05 Score=57.69 Aligned_cols=47 Identities=17% Similarity=0.279 Sum_probs=32.9
Q ss_pred EEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 17 LGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 17 ~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
-|++|||+|++++....++++.+.++.+ . ...+++++||++|+|+.+
T Consensus 233 DIVVLNKiDLl~~~~~dle~~~~~lr~l----n---p~a~I~~vSA~tGeGld~ 279 (290)
T PRK10463 233 SLMLLNKVDLLPYLNFDVEKCIACAREV----N---PEIEIILISATSGEGMDQ 279 (290)
T ss_pred cEEEEEhHHcCcccHHHHHHHHHHHHhh----C---CCCcEEEEECCCCCCHHH
Confidence 4899999999864344444444443332 2 248999999999999854
No 50
>PRK09866 hypothetical protein; Provisional
Probab=97.75 E-value=6.7e-05 Score=61.35 Aligned_cols=55 Identities=18% Similarity=0.228 Sum_probs=37.3
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|+++||+|+.+...+..+.+++.+...+.+..+ +...|+||||++|.|+...
T Consensus 290 ~PVILVVNKIDl~dreeddkE~Lle~V~~~L~q~~i--~f~eIfPVSAlkG~nid~L 344 (741)
T PRK09866 290 VPLYVLVNKFDQQDRNSDDADQVRALISGTLMKGCI--TPQQIFPVSSMWGYLANRA 344 (741)
T ss_pred CCEEEEEEcccCCCcccchHHHHHHHHHHHHHhcCC--CCceEEEEeCCCCCCHHHH
Confidence 379999999998752233345555555554433233 3479999999999998553
No 51
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=97.72 E-value=4.1e-05 Score=49.49 Aligned_cols=48 Identities=15% Similarity=0.166 Sum_probs=32.3
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
+++|+++||+|+.+. ... .++.+.+.+..++ .+++++||.+|.|+.+.
T Consensus 89 ~p~ilv~NK~Dl~~~-~~~----~~~~~~~~~~~~~----~~~~~~Sa~~~~gi~~l 136 (142)
T TIGR02528 89 KPVIGLVTKIDLAEA-DVD----IERAKELLETAGA----EPIFEISSVDEQGLEAL 136 (142)
T ss_pred CCeEEEEEeeccCCc-ccC----HHHHHHHHHHcCC----CcEEEEecCCCCCHHHH
Confidence 488999999998752 111 2233444444443 48999999999998653
No 52
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=97.71 E-value=4.7e-05 Score=50.07 Aligned_cols=55 Identities=27% Similarity=0.425 Sum_probs=33.5
Q ss_pred cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHh--CCCCCCceEEEeeeccCCCCCCC
Q psy15201 12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQA--GFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~--~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++ ++++++||+|+.+...+++. +.+..+.... .. ....+++|+||.+|.|+.+.
T Consensus 101 ~~~-p~ivv~NK~Dl~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l 157 (168)
T cd01887 101 ANV-PFIVALNKIDKPNANPERVK---NELSELGLQGEDEW-GGDVQIVPTSAKTGEGIDDL 157 (168)
T ss_pred cCC-CEEEEEEceecccccHHHHH---HHHHHhhccccccc-cCcCcEEEeecccCCCHHHH
Confidence 454 68999999998753333322 2232222110 11 12478999999999998653
No 53
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.71 E-value=3.1e-05 Score=60.37 Aligned_cols=56 Identities=20% Similarity=0.303 Sum_probs=43.1
Q ss_pred eccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCC
Q psy15201 10 AVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72 (97)
Q Consensus 10 ~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~ 72 (97)
.+||+++.|+|+||+|+++ ++|.++..+++...+ .+ .+.+++++|+.+|+|+.+..
T Consensus 99 dllgi~~giivltk~D~~d--~~r~e~~i~~Il~~l---~l--~~~~i~~~s~~~g~GI~~Lk 154 (447)
T COG3276 99 DLLGIKNGIIVLTKADRVD--EARIEQKIKQILADL---SL--ANAKIFKTSAKTGRGIEELK 154 (447)
T ss_pred HhcCCCceEEEEecccccc--HHHHHHHHHHHHhhc---cc--ccccccccccccCCCHHHHH
Confidence 4699999999999999995 556666555554444 34 46899999999999886653
No 54
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=97.68 E-value=8.2e-05 Score=59.93 Aligned_cols=56 Identities=30% Similarity=0.490 Sum_probs=35.3
Q ss_pred eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHH---HHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAF---LKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~---l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
++..+++ +|+++||+|+.+.+.++ +++++..+ ....+ .+.+++|+||++|.|+.+.
T Consensus 183 ~~~~~vP-iIVviNKiDl~~~~~e~---v~~~L~~~g~~~~~~~---~~~~~v~iSAktGeGI~eL 241 (587)
T TIGR00487 183 AKAANVP-IIVAINKIDKPEANPDR---VKQELSEYGLVPEDWG---GDTIFVPVSALTGDGIDEL 241 (587)
T ss_pred HHHcCCC-EEEEEECcccccCCHHH---HHHHHHHhhhhHHhcC---CCceEEEEECCCCCChHHH
Confidence 4456764 99999999997533322 22332221 11111 2468999999999999764
No 55
>COG1159 Era GTPase [General function prediction only]
Probab=97.68 E-value=6.9e-05 Score=55.90 Aligned_cols=49 Identities=31% Similarity=0.457 Sum_probs=32.8
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|+++||+|.+. ++..+..+.+. +-....| ..++||||++|.|+...
T Consensus 115 ~pvil~iNKID~~~-~~~~l~~~~~~---~~~~~~f----~~ivpiSA~~g~n~~~L 163 (298)
T COG1159 115 TPVILVVNKIDKVK-PKTVLLKLIAF---LKKLLPF----KEIVPISALKGDNVDTL 163 (298)
T ss_pred CCeEEEEEccccCC-cHHHHHHHHHH---HHhhCCc----ceEEEeeccccCCHHHH
Confidence 47899999999986 23322222222 2222234 69999999999999664
No 56
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=97.68 E-value=5.3e-05 Score=49.89 Aligned_cols=51 Identities=24% Similarity=0.189 Sum_probs=31.5
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++++++||+|+.+. . ...+ +...+....+.....+++|+||++|.|+.+.
T Consensus 101 ~piiiv~nK~Dl~~~-~-~~~~----i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 151 (158)
T cd04151 101 AVLLVFANKQDMPGA-L-SEAE----ISEKLGLSELKDRTWSIFKTSAIKGEGLDEG 151 (158)
T ss_pred CcEEEEEeCCCCCCC-C-CHHH----HHHHhCccccCCCcEEEEEeeccCCCCHHHH
Confidence 589999999998741 1 1112 2222211112223468999999999998654
No 57
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=97.67 E-value=4.5e-05 Score=51.09 Aligned_cols=52 Identities=23% Similarity=0.247 Sum_probs=33.7
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++++++||+|+.+.. . .++++..++....+....+++++||.+|.|+.+.
T Consensus 115 ~~p~iiv~nK~Dl~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 166 (173)
T cd04154 115 GATLLILANKQDLPGAL--S----EEEIREALELDKISSHHWRIQPCSAVTGEGLLQG 166 (173)
T ss_pred CCCEEEEEECcccccCC--C----HHHHHHHhCccccCCCceEEEeccCCCCcCHHHH
Confidence 36799999999987411 1 1233333332222234579999999999999653
No 58
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=97.67 E-value=6.1e-05 Score=52.65 Aligned_cols=62 Identities=16% Similarity=0.208 Sum_probs=45.6
Q ss_pred cCCCeEEEEEEcCCCCC--------CCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCCCCCCCccc
Q psy15201 12 SGVNQLGVVINKLDTVS--------WSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYS 82 (97)
Q Consensus 12 lGvk~~Iv~INK~D~v~--------~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~ 82 (97)
.+ .++|+++||+|++. ...++++++.+++..+++..++++ .+.++|++ .|+...++. +.|+-
T Consensus 122 ~~-~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~~n~~~~~~~~~~-~~~~~p~~----~nv~~~s~~---~~w~~ 191 (213)
T cd04167 122 EG-LPIVLVINKIDRLILELKLPPNDAYFKLRHIIDEVNNIIASFSTTL-SFLFSPEN----GNVCFASSK---FGFCF 191 (213)
T ss_pred cC-CCEEEEEECcccCcccccCCHHHHHHHHHHHHHHHHHHHHHhcCCC-ceEeccCC----CeEEEEecC---CCeEE
Confidence 45 57899999999862 123578888888888888877753 36677774 788777765 78873
No 59
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=97.65 E-value=7.9e-05 Score=49.98 Aligned_cols=47 Identities=15% Similarity=0.147 Sum_probs=33.6
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
+++++++||+|+.+.+ . +++..+++..++ ..|++++||++|.|+.+.
T Consensus 92 ~~ii~v~nK~Dl~~~~---~----~~~~~~~~~~~~---~~p~~~~Sa~~g~gi~~l 138 (158)
T PRK15467 92 KRQIAVISKTDMPDAD---V----AATRKLLLETGF---EEPIFELNSHDPQSVQQL 138 (158)
T ss_pred CCeEEEEEccccCccc---H----HHHHHHHHHcCC---CCCEEEEECCCccCHHHH
Confidence 4689999999986421 1 234455555554 269999999999999764
No 60
>PRK04213 GTP-binding protein; Provisional
Probab=97.62 E-value=4.4e-05 Score=52.28 Aligned_cols=51 Identities=20% Similarity=0.285 Sum_probs=30.7
Q ss_pred cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCC----CCCceEEEeeeccCCCCCCC
Q psy15201 12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFR----DSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~----~~~~~iipiSA~~G~ni~~~ 71 (97)
.++ ++|+++||+|+.+.. .+..+++... .+.. .-..+++++||.+| |+.+.
T Consensus 129 ~~~-p~iiv~NK~Dl~~~~----~~~~~~~~~~---~~~~~~~~~~~~~~~~~SA~~g-gi~~l 183 (201)
T PRK04213 129 LGI-PPIVAVNKMDKIKNR----DEVLDEIAER---LGLYPPWRQWQDIIAPISAKKG-GIEEL 183 (201)
T ss_pred cCC-CeEEEEECccccCcH----HHHHHHHHHH---hcCCccccccCCcEEEEecccC-CHHHH
Confidence 344 689999999997522 1122222222 2321 01137899999999 99754
No 61
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.60 E-value=6.2e-05 Score=52.57 Aligned_cols=48 Identities=23% Similarity=0.145 Sum_probs=32.1
Q ss_pred eEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 16 QLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 16 ~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
+.++++||+|+++......++..+.++. .. ...+++++||++|.|+.+
T Consensus 150 a~iiv~NK~Dl~~~~~~~~~~~~~~l~~----~~---~~~~i~~~Sa~~g~gv~~ 197 (207)
T TIGR00073 150 ADLIVINKADLAEAVGFDVEKMKADAKK----IN---PEAEIILMSLKTGEGLDE 197 (207)
T ss_pred CCEEEEEHHHccccchhhHHHHHHHHHH----hC---CCCCEEEEECCCCCCHHH
Confidence 4599999999985322333444444332 22 237899999999999854
No 62
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=97.57 E-value=0.00012 Score=46.50 Aligned_cols=48 Identities=21% Similarity=0.209 Sum_probs=33.5
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++++++||+|+.... ...+....+...+. .+++|+||.+|.|+.+.
T Consensus 108 ~~p~ivv~nK~D~~~~~------~~~~~~~~~~~~~~----~~~~~~sa~~~~gv~~~ 155 (161)
T TIGR00231 108 NVPIILVGNKIDLRDAK------LKTHVAFLFAKLNG----EPIIPLSAETGKNIDSA 155 (161)
T ss_pred CCcEEEEEEcccCCcch------hhHHHHHHHhhccC----CceEEeecCCCCCHHHH
Confidence 34789999999998522 23444444544443 57999999999998653
No 63
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.57 E-value=0.00017 Score=48.03 Aligned_cols=47 Identities=19% Similarity=0.254 Sum_probs=30.7
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
+++|+++||+|+++ ++...+ .+..+ +... ..+++++||.+|.|+.+.
T Consensus 30 ~p~IiVlNK~Dl~~--~~~~~~---~~~~~-~~~~----~~~ii~vSa~~~~gi~~L 76 (155)
T cd01849 30 KKLILVLNKADLVP--KEVLRK---WLAYL-RHSY----PTIPFKISATNGQGIEKK 76 (155)
T ss_pred CCEEEEEechhcCC--HHHHHH---HHHHH-HhhC----CceEEEEeccCCcChhhH
Confidence 57999999999985 332221 12222 2222 257899999999998654
No 64
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=97.56 E-value=0.00014 Score=52.75 Aligned_cols=49 Identities=27% Similarity=0.403 Sum_probs=32.5
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~ 72 (97)
.++|+++||+|+++ .+.. .+.+..+.+..++ .+++|+||.+|.|+.+..
T Consensus 108 ~p~ilV~NK~Dl~~--~~~~---~~~~~~~~~~~~~----~~v~~iSA~~g~gi~~L~ 156 (270)
T TIGR00436 108 RPVVLTRNKLDNKF--KDKL---LPLIDKYAILEDF----KDIVPISALTGDNTSFLA 156 (270)
T ss_pred CCEEEEEECeeCCC--HHHH---HHHHHHHHhhcCC----CceEEEecCCCCCHHHHH
Confidence 47899999999974 2222 2223333332233 489999999999997653
No 65
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=97.56 E-value=0.00012 Score=48.82 Aligned_cols=50 Identities=22% Similarity=0.234 Sum_probs=31.9
Q ss_pred CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 13 GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 13 Gvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
++ ++|+++||+|+.+.. ..++.+++... .++. ..+++++||.+|.|+.+.
T Consensus 119 ~~-~iiiv~NK~Dl~~~~---~~~~~~~~~~~---~~~~--~~~~~~~Sa~~g~gi~~l 168 (179)
T cd01890 119 NL-EIIPVINKIDLPSAD---PERVKQQIEDV---LGLD--PSEAILVSAKTGLGVEDL 168 (179)
T ss_pred CC-CEEEEEECCCCCcCC---HHHHHHHHHHH---hCCC--cccEEEeeccCCCCHHHH
Confidence 44 589999999987422 22222333332 2432 246899999999999654
No 66
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=97.54 E-value=9.2e-05 Score=60.56 Aligned_cols=51 Identities=22% Similarity=0.111 Sum_probs=34.4
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
+++|+++||+|+++ .+..+.+...+...+... ...+++++||++|.|+.+.
T Consensus 562 ~piIiV~NK~DL~~--~~~~~~~~~~~~~~l~~~----~~~~ii~iSAktg~gv~~L 612 (712)
T PRK09518 562 RALVLVFNKWDLMD--EFRRQRLERLWKTEFDRV----TWARRVNLSAKTGWHTNRL 612 (712)
T ss_pred CCEEEEEEchhcCC--hhHHHHHHHHHHHhccCC----CCCCEEEEECCCCCCHHHH
Confidence 57999999999985 333333434444333222 2478999999999999664
No 67
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=97.54 E-value=0.00013 Score=48.39 Aligned_cols=53 Identities=26% Similarity=0.390 Sum_probs=34.6
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHH---------HHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEI---------VTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i---------~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++|++.||+|+.+ .....+++ .++...+.+..+. .+++++||++|.|+.+.
T Consensus 102 ~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~v~~l 163 (174)
T smart00174 102 NTPIILVGTKLDLRE-DKSTLRELSKQKQEPVTYEQGEALAKRIGA----VKYLECSALTQEGVREV 163 (174)
T ss_pred CCCEEEEecChhhhh-ChhhhhhhhcccCCCccHHHHHHHHHHcCC----cEEEEecCCCCCCHHHH
Confidence 468999999999875 22222211 1233445544443 58999999999998764
No 68
>KOG0461|consensus
Probab=97.53 E-value=0.00023 Score=54.87 Aligned_cols=53 Identities=26% Similarity=0.354 Sum_probs=43.8
Q ss_pred cCCCeEEEEEEcCCCCCC--CHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccC
Q psy15201 12 SGVNQLGVVINKLDTVSW--SQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTG 65 (97)
Q Consensus 12 lGvk~~Iv~INK~D~v~~--~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G 65 (97)
+-+++.||++||+|..+. ..+.+++...+++.-++.++|. .+.||+++||..|
T Consensus 120 ~~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~-g~~PI~~vsa~~G 174 (522)
T KOG0461|consen 120 LLCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFD-GNSPIVEVSAADG 174 (522)
T ss_pred hhccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCcC-CCCceeEEecCCC
Confidence 446789999999997752 3467888888889999999985 5699999999999
No 69
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=97.53 E-value=0.00014 Score=48.00 Aligned_cols=47 Identities=23% Similarity=0.237 Sum_probs=31.7
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++|+++||+|+.+ .....+ .+.+.+. ...+++++||++|.|+.+.
T Consensus 113 ~~pvilv~NK~Dl~~--~~~~~~----~~~~~~~-----~~~~~~~~Sa~~~~gi~~l 159 (168)
T cd01897 113 NKPVIVVLNKIDLLT--FEDLSE----IEEEEEL-----EGEEVLKISTLTEEGVDEV 159 (168)
T ss_pred cCCeEEEEEccccCc--hhhHHH----HHHhhhh-----ccCceEEEEecccCCHHHH
Confidence 468999999999975 222222 2222221 2368999999999998654
No 70
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=97.52 E-value=0.00017 Score=58.17 Aligned_cols=19 Identities=26% Similarity=0.510 Sum_probs=16.6
Q ss_pred CceEEEeeeccCCCCCCCC
Q psy15201 54 DIEYVPCSGLTGENLTTPS 72 (97)
Q Consensus 54 ~~~iipiSA~~G~ni~~~~ 72 (97)
.++++|+||++|+|+++.-
T Consensus 190 ~v~iVpVSA~tGeGideLl 208 (590)
T TIGR00491 190 TVAIIPISAITGEGIPELL 208 (590)
T ss_pred CceEEEeecCCCCChhHHH
Confidence 5899999999999997753
No 71
>KOG0466|consensus
Probab=97.52 E-value=9.8e-05 Score=56.14 Aligned_cols=56 Identities=14% Similarity=0.241 Sum_probs=46.2
Q ss_pred ccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 11 VSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 11 ~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
.+..+++|+.-||+|++. ++...+-.++++.|++.... +..|+||+||--+.|++-
T Consensus 176 iM~LkhiiilQNKiDli~--e~~A~eq~e~I~kFi~~t~a--e~aPiiPisAQlkyNId~ 231 (466)
T KOG0466|consen 176 IMKLKHIIILQNKIDLIK--ESQALEQHEQIQKFIQGTVA--EGAPIIPISAQLKYNIDV 231 (466)
T ss_pred HhhhceEEEEechhhhhh--HHHHHHHHHHHHHHHhcccc--CCCceeeehhhhccChHH
Confidence 477899999999999994 66677777888888876654 468999999999998853
No 72
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=97.50 E-value=0.00041 Score=49.29 Aligned_cols=57 Identities=14% Similarity=0.189 Sum_probs=38.9
Q ss_pred ccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 11 VSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 11 ~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
..|+..+|+++||+|+++ +...+++++++++..+..--+ ...+++++||++...+..
T Consensus 130 ~~g~p~vi~VvnK~D~~~-~~~~~~~~~~~l~~~~~~~~~--~~~ki~~iSa~~~~~~~~ 186 (225)
T cd01882 130 VHGFPRVMGVLTHLDLFK-KNKTLRKTKKRLKHRFWTEVY--QGAKLFYLSGIVHGRYPK 186 (225)
T ss_pred HcCCCeEEEEEeccccCC-cHHHHHHHHHHHHHHHHHhhC--CCCcEEEEeeccCCCCCH
Confidence 356666777999999985 345566777777663322112 247999999998866544
No 73
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.48 E-value=0.00036 Score=45.83 Aligned_cols=43 Identities=21% Similarity=0.312 Sum_probs=29.2
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGEN 67 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~n 67 (97)
-+++|+++||+|+++ ++..+ +...+++..+ .+++++||.+|.+
T Consensus 42 ~k~~iivlNK~DL~~--~~~~~----~~~~~~~~~~-----~~ii~iSa~~~~~ 84 (141)
T cd01857 42 RKKNILLLNKADLLT--EEQRK----AWAEYFKKEG-----IVVVFFSALKENA 84 (141)
T ss_pred CCcEEEEEechhcCC--HHHHH----HHHHHHHhcC-----CeEEEEEecCCCc
Confidence 357999999999974 33222 3333444333 4789999999986
No 74
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.48 E-value=0.00014 Score=49.80 Aligned_cols=54 Identities=20% Similarity=0.154 Sum_probs=31.5
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHH-HHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGA-FLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~-~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
+++|+++||+|+++. +...+++...... ..+..++ ...+++++||++|.|+.+.
T Consensus 62 ~~~ilV~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~i~~vSA~~~~gi~eL 116 (190)
T cd01855 62 NPVILVGNKIDLLPK-DKNLVRIKNWLRAKAAAGLGL--KPKDVILISAKKGWGVEEL 116 (190)
T ss_pred CcEEEEEEchhcCCC-CCCHHHHHHHHHHHHHhhcCC--CcccEEEEECCCCCCHHHH
Confidence 578999999999752 1111211111111 1122232 1246899999999999664
No 75
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=97.47 E-value=0.00013 Score=48.50 Aligned_cols=54 Identities=24% Similarity=0.215 Sum_probs=33.9
Q ss_pred CCeEEEEEEcCCCCCCCHHHHH-------HH-HHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQ-------EI-VTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~-------~i-~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++|++.||+|+.+....+.. .+ .++.+.+.+..+. .+++.+||++|.|+.+.
T Consensus 104 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~gi~~~ 165 (174)
T cd04135 104 NVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGA----HCYVECSALTQKGLKTV 165 (174)
T ss_pred CCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCC----CEEEEecCCcCCCHHHH
Confidence 3578999999998752221110 00 1233444454443 57999999999998654
No 76
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=97.47 E-value=0.00014 Score=47.50 Aligned_cols=51 Identities=20% Similarity=0.192 Sum_probs=30.6
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++++++||+|+.+. ....+ +...++.........+++++||++|.|+.+.
T Consensus 105 ~p~iiv~NK~Dl~~~--~~~~~----~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~ 155 (162)
T cd04157 105 VPILFFANKMDLPDA--LTAVK----ITQLLGLENIKDKPWHIFASNALTGEGLDEG 155 (162)
T ss_pred CCEEEEEeCccccCC--CCHHH----HHHHhCCccccCceEEEEEeeCCCCCchHHH
Confidence 579999999998752 11122 2222211111112357999999999999764
No 77
>PRK00089 era GTPase Era; Reviewed
Probab=97.44 E-value=0.00024 Score=51.72 Aligned_cols=49 Identities=27% Similarity=0.431 Sum_probs=32.7
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++++++||+|++. +.+...+..+.+. +..+ ..+++|+||.+|.|+.+.
T Consensus 114 ~pvilVlNKiDl~~-~~~~l~~~~~~l~---~~~~----~~~i~~iSA~~~~gv~~L 162 (292)
T PRK00089 114 TPVILVLNKIDLVK-DKEELLPLLEELS---ELMD----FAEIVPISALKGDNVDEL 162 (292)
T ss_pred CCEEEEEECCcCCC-CHHHHHHHHHHHH---hhCC----CCeEEEecCCCCCCHHHH
Confidence 47899999999984 2333333323322 2223 368999999999998664
No 78
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=97.44 E-value=0.00016 Score=46.99 Aligned_cols=48 Identities=21% Similarity=0.162 Sum_probs=31.6
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++|++.||+|+.+. ... .++...+.+..+ .+++++||.+|.|+.+.
T Consensus 106 ~~piivv~nK~Dl~~~-~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l 153 (162)
T cd04138 106 DVPMVLVGNKCDLAAR-TVS----SRQGQDLAKSYG-----IPYIETSAKTRQGVEEA 153 (162)
T ss_pred CCCEEEEEECcccccc-eec----HHHHHHHHHHhC-----CeEEEecCCCCCCHHHH
Confidence 3578999999998751 111 122333333333 58999999999998653
No 79
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=97.43 E-value=0.00015 Score=47.39 Aligned_cols=53 Identities=23% Similarity=0.218 Sum_probs=33.7
Q ss_pred CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 13 GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 13 Gvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.-.+++++.||+|+... ...+++.+ .++.........+++++||++|.|+.+.
T Consensus 99 ~~~piiiv~nK~D~~~~--~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 151 (158)
T cd00878 99 KGVPLLIFANKQDLPGA--LSVSELIE----KLGLEKILGRRWHIQPCSAVTGDGLDEG 151 (158)
T ss_pred CCCcEEEEeeccCCccc--cCHHHHHH----hhChhhccCCcEEEEEeeCCCCCCHHHH
Confidence 34689999999998752 12222222 2222112224579999999999998653
No 80
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=97.42 E-value=0.00018 Score=48.39 Aligned_cols=51 Identities=22% Similarity=0.188 Sum_probs=31.8
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.+++++.||+|+.+. . . .++++..++.........+++++||++|.|+.+.
T Consensus 111 ~piilv~NK~Dl~~~-~-~----~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~ 161 (168)
T cd04149 111 ALLLVFANKQDLPDA-M-K----PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEG 161 (168)
T ss_pred CcEEEEEECcCCccC-C-C----HHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHH
Confidence 479999999998641 0 1 1233333321112223468999999999998653
No 81
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=97.42 E-value=0.00022 Score=57.50 Aligned_cols=59 Identities=31% Similarity=0.311 Sum_probs=41.9
Q ss_pred eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCC--CceEEEeeeccCCCCCCC
Q psy15201 9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDS--DIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~--~~~iipiSA~~G~ni~~~ 71 (97)
+...|++ .|+++||||+.+ .++.++.+++..++...+...+ ..|++++||.+|.+..+.
T Consensus 112 a~~~~ip-~IVviNKiD~~~---a~~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~ 172 (594)
T TIGR01394 112 ALELGLK-PIVVINKIDRPS---ARPDEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDL 172 (594)
T ss_pred HHHCCCC-EEEEEECCCCCC---cCHHHHHHHHHHHHHhhccccccccCcEEechhhcCcccccC
Confidence 4457875 689999999874 3456666777777765554322 368999999999876543
No 82
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=97.42 E-value=0.00038 Score=47.15 Aligned_cols=52 Identities=21% Similarity=0.277 Sum_probs=36.1
Q ss_pred cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++ ++++++||+|+.+ ....+++.+++...++.. ..+++|+||++|.|+.+.
T Consensus 134 ~~~-~~iiv~nK~Dl~~--~~~~~~~~~~i~~~l~~~-----~~~~~~~Sa~~~~gi~~l 185 (196)
T PRK00454 134 YGI-PVLIVLTKADKLK--KGERKKQLKKVRKALKFG-----DDEVILFSSLKKQGIDEL 185 (196)
T ss_pred cCC-cEEEEEECcccCC--HHHHHHHHHHHHHHHHhc-----CCceEEEEcCCCCCHHHH
Confidence 454 4799999999974 344445555565555432 368899999999998653
No 83
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=97.42 E-value=0.00018 Score=46.75 Aligned_cols=47 Identities=21% Similarity=0.309 Sum_probs=30.5
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
+++|+++||+|+++. . ... ...+.+.+..+ .+++++||.+|.|+.+.
T Consensus 102 ~~~iiv~NK~Dl~~~-~-~~~---~~~~~~~~~~~-----~~~~~iSa~~~~~~~~l 148 (158)
T cd01879 102 LPVVVALNMIDEAEK-R-GIK---IDLDKLSELLG-----VPVVPTSARKGEGIDEL 148 (158)
T ss_pred CCEEEEEehhhhccc-c-cch---hhHHHHHHhhC-----CCeEEEEccCCCCHHHH
Confidence 478999999999752 1 111 11222222223 58999999999998653
No 84
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=97.40 E-value=0.00025 Score=53.30 Aligned_cols=48 Identities=31% Similarity=0.450 Sum_probs=31.9
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-+++|+++||+|+.+ .+..+++.+ .+.+..+ .+++++||++|.|+.+.
T Consensus 273 ~kp~IIV~NK~DL~~--~~~~~~~~~---~l~~~~~-----~~vi~iSAktg~GI~eL 320 (329)
T TIGR02729 273 EKPRIVVLNKIDLLD--EEELAELLK---ELKKALG-----KPVFPISALTGEGLDEL 320 (329)
T ss_pred cCCEEEEEeCccCCC--hHHHHHHHH---HHHHHcC-----CcEEEEEccCCcCHHHH
Confidence 468899999999975 222232222 2222222 58999999999998654
No 85
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=97.40 E-value=0.00017 Score=46.98 Aligned_cols=49 Identities=27% Similarity=0.205 Sum_probs=31.3
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++|+++||+|+.+..+.. ..+...+.+..+ .+++++||.+|.|+.+.
T Consensus 105 ~~piiiv~NK~D~~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l 153 (164)
T cd04139 105 NVPLLLVGNKCDLEDKRQVS----SEEAANLARQWG-----VPYVETSAKTRQNVEKA 153 (164)
T ss_pred CCCEEEEEEccccccccccC----HHHHHHHHHHhC-----CeEEEeeCCCCCCHHHH
Confidence 35789999999987511111 112222333333 58999999999999654
No 86
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.39 E-value=0.00019 Score=59.28 Aligned_cols=56 Identities=25% Similarity=0.374 Sum_probs=36.4
Q ss_pred eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHH---HHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAF---LKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~---l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
++..++ ++|+++||+|+.+.+ ++++.+++..+ .+..+ ...+++|+||++|.|+.+.
T Consensus 343 ~k~~~i-PiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g---~~vpvv~VSAktG~GIdeL 401 (742)
T CHL00189 343 IQAANV-PIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWG---GDTPMIPISASQGTNIDKL 401 (742)
T ss_pred HHhcCc-eEEEEEECCCccccC---HHHHHHHHHHhccchHhhC---CCceEEEEECCCCCCHHHH
Confidence 445676 599999999997532 33334444322 12122 2479999999999999664
No 87
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=97.36 E-value=0.00027 Score=46.97 Aligned_cols=52 Identities=17% Similarity=0.081 Sum_probs=31.5
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.+++++.||+|+.+... .+ ++...+....+......++++||++|.|+.+.
T Consensus 101 ~~piilv~NK~Dl~~~~~--~~----~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~ 152 (159)
T cd04150 101 DAVLLVFANKQDLPNAMS--AA----EVTDKLGLHSLRNRNWYIQATCATSGDGLYEG 152 (159)
T ss_pred CCCEEEEEECCCCCCCCC--HH----HHHHHhCccccCCCCEEEEEeeCCCCCCHHHH
Confidence 468999999999864111 11 22222211112223467889999999998654
No 88
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.36 E-value=0.00029 Score=46.92 Aligned_cols=46 Identities=15% Similarity=-0.015 Sum_probs=28.7
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
++.|+++||+|+++ ++... ..+..+ ++. + ...++|+||.+|.|+.+
T Consensus 40 ~p~ilVlNKiDl~~--~~~~~---~~~~~~-~~~-~---~~~~~~iSa~~~~~~~~ 85 (157)
T cd01858 40 KHLIFVLNKCDLVP--TWVTA---RWVKIL-SKE-Y---PTIAFHASINNPFGKGS 85 (157)
T ss_pred CCEEEEEEchhcCC--HHHHH---HHHHHH-hcC-C---cEEEEEeeccccccHHH
Confidence 57899999999985 32222 222222 211 2 13368999999998754
No 89
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.35 E-value=0.0003 Score=47.47 Aligned_cols=55 Identities=27% Similarity=0.365 Sum_probs=39.8
Q ss_pred CceeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 7 GKSAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 7 ~~~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
|=++.+. +++|-+|||+|+.. +++..+ +.+.+|+..|+ ..++++|+.+|+|+.+.
T Consensus 83 ~fa~~f~-~pvIGVITK~Dl~~-~~~~i~----~a~~~L~~aG~----~~if~vS~~~~eGi~eL 137 (143)
T PF10662_consen 83 GFASMFN-KPVIGVITKIDLPS-DDANIE----RAKKWLKNAGV----KEIFEVSAVTGEGIEEL 137 (143)
T ss_pred hhhcccC-CCEEEEEECccCcc-chhhHH----HHHHHHHHcCC----CCeEEEECCCCcCHHHH
Confidence 4455554 68999999999984 344444 34556777787 36799999999999764
No 90
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.33 E-value=0.00033 Score=52.41 Aligned_cols=53 Identities=19% Similarity=0.329 Sum_probs=37.9
Q ss_pred eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
|...|+++ |+++||+|+++ +++... ++....++..++ +++.+|+.+++++.+.
T Consensus 106 ae~~gi~p-vIvlnK~DL~~-~~~~~~---~~~~~~y~~~gy-----~v~~~s~~~~~~~~~l 158 (301)
T COG1162 106 AEAGGIEP-VIVLNKIDLLD-DEEAAV---KELLREYEDIGY-----PVLFVSAKNGDGLEEL 158 (301)
T ss_pred HHHcCCcE-EEEEEccccCc-chHHHH---HHHHHHHHhCCe-----eEEEecCcCcccHHHH
Confidence 45678987 55599999996 333332 445555666665 8899999999988665
No 91
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=97.33 E-value=0.00053 Score=44.32 Aligned_cols=51 Identities=20% Similarity=0.212 Sum_probs=34.5
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
.++++++||+|+.. ..........+...++. .. ...+++|+||++|.++.+
T Consensus 111 ~~vi~v~nK~D~~~--~~~~~~~~~~~~~~l~~-~~--~~~~~~~~Sa~~~~~~~~ 161 (170)
T cd01876 111 IPFLVVLTKADKLK--KSELAKALKEIKKELKL-FE--IDPPIILFSSLKGQGIDE 161 (170)
T ss_pred CCEEEEEEchhcCC--hHHHHHHHHHHHHHHHh-cc--CCCceEEEecCCCCCHHH
Confidence 46899999999874 44444444555555542 11 236899999999998754
No 92
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.32 E-value=0.00027 Score=53.65 Aligned_cols=57 Identities=19% Similarity=0.246 Sum_probs=39.4
Q ss_pred cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
++-+++++++||+|+.+. +...+++.+.++.+.+..++. ...++++||.+|.|+.+.
T Consensus 88 ~~~~piilV~NK~DLl~k-~~~~~~~~~~l~~~~k~~g~~--~~~i~~vSAk~g~gv~eL 144 (360)
T TIGR03597 88 VGGNPVLLVGNKIDLLPK-SVNLSKIKEWMKKRAKELGLK--PVDIILVSAKKGNGIDEL 144 (360)
T ss_pred hCCCCEEEEEEchhhCCC-CCCHHHHHHHHHHHHHHcCCC--cCcEEEecCCCCCCHHHH
Confidence 456789999999999862 222344455555566655552 236899999999998764
No 93
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=97.30 E-value=0.0003 Score=46.36 Aligned_cols=49 Identities=31% Similarity=0.320 Sum_probs=31.8
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-+++|+++||+|+.+. .... +.+..+.+.. ...+++++||++|.|+.+.
T Consensus 114 ~~p~ivv~NK~Dl~~~--~~~~---~~~~~~~~~~----~~~~~~~~Sa~~~~gi~~l 162 (170)
T cd01898 114 EKPRIVVLNKIDLLDE--EELF---ELLKELLKEL----WGKPVFPISALTGEGLDEL 162 (170)
T ss_pred ccccEEEEEchhcCCc--hhhH---HHHHHHHhhC----CCCCEEEEecCCCCCHHHH
Confidence 3678999999998752 2221 2233333322 1368999999999998653
No 94
>PRK10218 GTP-binding protein; Provisional
Probab=97.30 E-value=0.00039 Score=56.29 Aligned_cols=60 Identities=23% Similarity=0.187 Sum_probs=41.5
Q ss_pred eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCC--CCCceEEEeeeccCCCCCCCC
Q psy15201 9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFR--DSDIEYVPCSGLTGENLTTPS 72 (97)
Q Consensus 9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~--~~~~~iipiSA~~G~ni~~~~ 72 (97)
+..+|++. |+++||+|+.+ .+++++.+++..++..++.. ....|++++||.+|.+..+.+
T Consensus 116 a~~~gip~-IVviNKiD~~~---a~~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~ 177 (607)
T PRK10218 116 AFAYGLKP-IVVINKVDRPG---ARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHE 177 (607)
T ss_pred HHHcCCCE-EEEEECcCCCC---CchhHHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCcc
Confidence 44578865 78999999874 45556666676666543332 124799999999999765543
No 95
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.28 E-value=0.00027 Score=46.70 Aligned_cols=49 Identities=14% Similarity=0.125 Sum_probs=31.7
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|++.||+|+.+..+.. .++...+.+..+. .+++++||.+|.|+.+.
T Consensus 109 ~p~ivv~nK~Dl~~~~~~~----~~~~~~~~~~~~~----~~~~e~Sa~~~~~v~~~ 157 (165)
T cd01864 109 VVLLLIGNKCDLEEQREVL----FEEACTLAEKNGM----LAVLETSAKESQNVEEA 157 (165)
T ss_pred CcEEEEEECcccccccccC----HHHHHHHHHHcCC----cEEEEEECCCCCCHHHH
Confidence 3689999999987521111 1223334443333 57899999999998653
No 96
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=97.28 E-value=0.00032 Score=47.18 Aligned_cols=51 Identities=31% Similarity=0.305 Sum_probs=30.9
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++++++||+|+.+. . ..+++.+. +.....+....+++|+||.+|.|+.+.
T Consensus 117 ~p~viv~NK~Dl~~~-~-~~~~i~~~----l~~~~~~~~~~~~~~~SA~~g~gi~e~ 167 (174)
T cd04153 117 AVLLVLANKQDLKGA-M-TPAEISES----LGLTSIRDHTWHIQGCCALTGEGLPEG 167 (174)
T ss_pred CCEEEEEECCCCCCC-C-CHHHHHHH----hCcccccCCceEEEecccCCCCCHHHH
Confidence 579999999998641 1 11222222 210011112468999999999998664
No 97
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=97.28 E-value=0.00045 Score=47.24 Aligned_cols=49 Identities=18% Similarity=0.154 Sum_probs=31.3
Q ss_pred EEEEEcCCCCCC-CHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 18 GVVINKLDTVSW-SQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 18 Iv~INK~D~v~~-~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
|++.||+|+... +....+.+.++.+.+.+..+ .+++++||++|.|+.+.
T Consensus 108 ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~-----~~~~e~SAk~g~~v~~l 157 (182)
T cd04128 108 ILVGTKYDLFADLPPEEQEEITKQARKYAKAMK-----APLIFCSTSHSINVQKI 157 (182)
T ss_pred EEEEEchhccccccchhhhhhHHHHHHHHHHcC-----CEEEEEeCCCCCCHHHH
Confidence 678999998631 11111223344445544433 68999999999999765
No 98
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.28 E-value=0.00043 Score=45.87 Aligned_cols=46 Identities=20% Similarity=0.195 Sum_probs=30.0
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
+++|+++||+|+++ ++..++ ...+.+.. ..+++++||.+|.|+.+.
T Consensus 42 ~p~iiv~NK~Dl~~--~~~~~~----~~~~~~~~-----~~~~~~iSa~~~~gi~~L 87 (156)
T cd01859 42 KKLLIVLNKADLVP--KEVLEK----WKSIKESE-----GIPVVYVSAKERLGTKIL 87 (156)
T ss_pred CcEEEEEEhHHhCC--HHHHHH----HHHHHHhC-----CCcEEEEEccccccHHHH
Confidence 57899999999974 222221 11222221 257999999999998653
No 99
>PRK12289 GTPase RsgA; Reviewed
Probab=97.27 E-value=0.00048 Score=52.42 Aligned_cols=49 Identities=29% Similarity=0.287 Sum_probs=32.8
Q ss_pred cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCC
Q psy15201 12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72 (97)
Q Consensus 12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~ 72 (97)
.|+ ++|+|+||+|+++ ++..+ .+...++..++ +++++||.+|.|+.+..
T Consensus 119 ~~i-p~ILVlNK~DLv~--~~~~~----~~~~~~~~~g~-----~v~~iSA~tg~GI~eL~ 167 (352)
T PRK12289 119 TGL-EIVLCLNKADLVS--PTEQQ----QWQDRLQQWGY-----QPLFISVETGIGLEALL 167 (352)
T ss_pred CCC-CEEEEEEchhcCC--hHHHH----HHHHHHHhcCC-----eEEEEEcCCCCCHHHHh
Confidence 354 6799999999985 22222 22233344444 78999999999997653
No 100
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.25 E-value=0.00047 Score=52.19 Aligned_cols=53 Identities=21% Similarity=0.226 Sum_probs=35.2
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCC--CCCceEEEeeeccCCCCCCCC
Q psy15201 18 GVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFR--DSDIEYVPCSGLTGENLTTPS 72 (97)
Q Consensus 18 Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~--~~~~~iipiSA~~G~ni~~~~ 72 (97)
|+++||+|+.+ ....++...+++..+...... ....|++++||.+|.|+.+.-
T Consensus 198 IiVVNKaDl~~--~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~ 252 (332)
T PRK09435 198 LIVINKADGDN--KTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIW 252 (332)
T ss_pred eEEeehhcccc--hhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHH
Confidence 89999999985 333445555566555432210 112689999999999997753
No 101
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=97.25 E-value=0.0006 Score=45.28 Aligned_cols=53 Identities=21% Similarity=0.245 Sum_probs=33.0
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHH---------HHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIV---------TKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~---------~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.+++++.||+|+.+ .....+++. .+.+.+.+..+ ..+++++||.+|.|+.+.
T Consensus 105 ~~piilv~nK~Dl~~-~~~~~~~i~~~~~~~v~~~~~~~~~~~~~----~~~~~~~Sa~~~~~v~~l 166 (175)
T cd01870 105 NVPIILVGNKKDLRN-DEHTRRELAKMKQEPVKPEEGRDMANKIG----AFGYMECSAKTKEGVREV 166 (175)
T ss_pred CCCEEEEeeChhccc-ChhhhhhhhhccCCCccHHHHHHHHHHcC----CcEEEEeccccCcCHHHH
Confidence 458999999999875 222222211 22233333333 258999999999998654
No 102
>PRK13796 GTPase YqeH; Provisional
Probab=97.25 E-value=0.00038 Score=52.99 Aligned_cols=57 Identities=23% Similarity=0.222 Sum_probs=38.3
Q ss_pred cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.+-+++++++||+|+.+. +...+++.+.++.+.+..++. ...++++||.+|.|+.+.
T Consensus 94 ~~~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~g~~--~~~v~~vSAk~g~gI~eL 150 (365)
T PRK13796 94 VGNNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKELGLR--PVDVVLISAQKGHGIDEL 150 (365)
T ss_pred hCCCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhcCCC--cCcEEEEECCCCCCHHHH
Confidence 345789999999999852 222334444455555555552 247899999999998654
No 103
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=97.24 E-value=0.00034 Score=46.36 Aligned_cols=47 Identities=21% Similarity=0.170 Sum_probs=31.5
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
.++|++.||+|+.+. +.. .++++.+.+..+. .+++++||.+|.|+.+
T Consensus 115 ~piilv~nK~Dl~~~-~~~----~~~~~~~~~~~~~----~~~~e~Sa~~~~~v~~ 161 (170)
T cd04116 115 FPFVVLGNKNDIPER-QVS----TEEAQAWCRENGD----YPYFETSAKDATNVAA 161 (170)
T ss_pred CcEEEEEECcccccc-ccC----HHHHHHHHHHCCC----CeEEEEECCCCCCHHH
Confidence 378999999998631 111 2334445544443 5899999999999864
No 104
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=97.24 E-value=0.00026 Score=46.30 Aligned_cols=48 Identities=17% Similarity=0.078 Sum_probs=31.1
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|+++||+|+.+..+.. .++...+.+..+ .+++++||.+|.|+.+.
T Consensus 108 ~piiiv~NK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l 155 (164)
T cd04145 108 FPMILVGNKADLEHQRKVS----REEGQELARKLK-----IPYIETSAKDRLNVDKA 155 (164)
T ss_pred CCEEEEeeCccccccceec----HHHHHHHHHHcC-----CcEEEeeCCCCCCHHHH
Confidence 4789999999986411101 122333444333 58899999999998653
No 105
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.24 E-value=0.00033 Score=48.20 Aligned_cols=49 Identities=22% Similarity=0.251 Sum_probs=33.7
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|++.||+|+.+... ...+++..+.+..++ .+++++||.+|.|+.+.
T Consensus 111 ~piilv~NK~Dl~~~~~----~~~~~~~~~~~~~~~----~~~~e~Sak~~~~v~e~ 159 (201)
T cd04107 111 IPCLLLANKCDLKKRLA----KDGEQMDQFCKENGF----IGWFETSAKEGINIEEA 159 (201)
T ss_pred CcEEEEEECCCcccccc----cCHHHHHHHHHHcCC----ceEEEEeCCCCCCHHHH
Confidence 47899999999973111 112344555555443 58999999999998764
No 106
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=97.23 E-value=0.00024 Score=48.21 Aligned_cols=52 Identities=15% Similarity=0.096 Sum_probs=32.2
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|++.||+|+.+..+.......+++..+.+..+ .+++++||.+|.|+.+.
T Consensus 106 ~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~l 157 (193)
T cd04118 106 CKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIK-----AQHFETSSKTGQNVDEL 157 (193)
T ss_pred CCEEEEEEcccccccccccCccCHHHHHHHHHHcC-----CeEEEEeCCCCCCHHHH
Confidence 47999999999874211111111123444443332 58999999999999654
No 107
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=97.23 E-value=0.00033 Score=55.66 Aligned_cols=48 Identities=21% Similarity=0.178 Sum_probs=32.3
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-++.|+++||+|+.+ ..+..+ .+...++..+ .++++|||.+|.|+.+.
T Consensus 284 ~kP~IVVlNKiDL~d-a~el~e----~l~~~l~~~g-----~~Vf~ISA~tgeGLdEL 331 (500)
T PRK12296 284 ERPRLVVLNKIDVPD-ARELAE----FVRPELEARG-----WPVFEVSAASREGLREL 331 (500)
T ss_pred CCCEEEEEECccchh-hHHHHH----HHHHHHHHcC-----CeEEEEECCCCCCHHHH
Confidence 468999999999874 222222 2233333322 58999999999999654
No 108
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=97.23 E-value=0.00026 Score=46.26 Aligned_cols=48 Identities=17% Similarity=0.087 Sum_probs=31.7
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|++.||+|+.+..+ .. .++...+.+..+ .+++++||.+|.|+.+.
T Consensus 107 ~p~iiv~nK~Dl~~~~~--v~--~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~l 154 (162)
T cd04106 107 IPMVLVQTKIDLLDQAV--IT--NEEAEALAKRLQ-----LPLFRTSVKDDFNVTEL 154 (162)
T ss_pred CCEEEEEEChhcccccC--CC--HHHHHHHHHHcC-----CeEEEEECCCCCCHHHH
Confidence 46899999999874211 11 123344444444 48999999999998653
No 109
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=97.22 E-value=0.00052 Score=44.27 Aligned_cols=44 Identities=27% Similarity=0.376 Sum_probs=29.8
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|+++||+|+.+. ... ...+...++ .+++++||.+|.|+.+.
T Consensus 106 ~piiiv~nK~D~~~~-~~~--------~~~~~~~~~----~~~~~~Sa~~~~gv~~l 149 (157)
T cd01894 106 KPVILVVNKVDNIKE-EDE--------AAEFYSLGF----GEPIPISAEHGRGIGDL 149 (157)
T ss_pred CCEEEEEECcccCCh-HHH--------HHHHHhcCC----CCeEEEecccCCCHHHH
Confidence 579999999999852 211 112223333 36899999999998653
No 110
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=97.22 E-value=0.0003 Score=46.20 Aligned_cols=48 Identities=19% Similarity=0.098 Sum_probs=31.3
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|++.||+|+.+... .. .++...+.+..+ .+++++||.+|.|+.+.
T Consensus 106 ~pii~v~nK~Dl~~~~~--~~--~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l 153 (164)
T smart00173 106 VPIVLVGNKCDLESERV--VS--TEEGKELARQWG-----CPFLETSAKERVNVDEA 153 (164)
T ss_pred CCEEEEEECccccccce--Ec--HHHHHHHHHHcC-----CEEEEeecCCCCCHHHH
Confidence 57899999999874111 00 122333333322 68999999999998653
No 111
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=97.22 E-value=0.00038 Score=45.87 Aligned_cols=50 Identities=22% Similarity=0.160 Sum_probs=32.7
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++++++||+|+.+..... .+++..+.+..+. .+++++||.+|.|+.+.
T Consensus 109 ~~p~ilv~nK~Dl~~~~~~~----~~~~~~~~~~~~~----~~~~~~Sa~~~~gv~~l 158 (172)
T cd01862 109 NFPFVVLGNKIDLEEKRQVS----TKKAQQWCQSNGN----IPYFETSAKEAINVEQA 158 (172)
T ss_pred CceEEEEEECcccccccccC----HHHHHHHHHHcCC----ceEEEEECCCCCCHHHH
Confidence 45789999999997311111 1223344444442 69999999999998553
No 112
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=97.20 E-value=0.00039 Score=52.46 Aligned_cols=49 Identities=20% Similarity=0.156 Sum_probs=31.7
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-+++|+++||+|+.+. +.... ++.+.+.+.. ..+++|+||++|+|+.+.
T Consensus 271 ~kp~IIV~NKiDL~~~-~~~~~---~~~~~~~~~~-----~~~i~~iSAktg~GI~eL 319 (335)
T PRK12299 271 DKPRILVLNKIDLLDE-EEERE---KRAALELAAL-----GGPVFLISAVTGEGLDEL 319 (335)
T ss_pred cCCeEEEEECcccCCc-hhHHH---HHHHHHHHhc-----CCCEEEEEcCCCCCHHHH
Confidence 4689999999999752 21111 1222222222 258999999999999764
No 113
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=97.20 E-value=0.00045 Score=45.46 Aligned_cols=53 Identities=23% Similarity=0.315 Sum_probs=34.2
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHH--------HHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQE--------IVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~--------i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.+++++.||+|+.+ ...+.+. ..++...+.+..+. .+++++||.+|.|+.+.
T Consensus 104 ~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~~~gi~~l 164 (171)
T cd00157 104 NVPIILVGTKIDLRD-DENTLKKLEKGKEPITPEEGEKLAKEIGA----IGYMECSALTQEGVKEV 164 (171)
T ss_pred CCCEEEEEccHHhhh-chhhhhhcccCCCccCHHHHHHHHHHhCC----eEEEEeecCCCCCHHHH
Confidence 468999999999875 2222111 12333444444333 48999999999998653
No 114
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=97.20 E-value=0.00072 Score=45.77 Aligned_cols=52 Identities=17% Similarity=0.261 Sum_probs=32.4
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHH---------HHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEI---------VTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i---------~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|++.||+|+.+. ....+.+ .++.+.+.+..+ ..+++++||++|.|+.+.
T Consensus 106 ~piilvgnK~Dl~~~-~~~~~~l~~~~~~~v~~~~~~~~a~~~~----~~~~~e~SA~tg~~v~~~ 166 (175)
T cd01874 106 TPFLLVGTQIDLRDD-PSTIEKLAKNKQKPITPETGEKLARDLK----AVKYVECSALTQKGLKNV 166 (175)
T ss_pred CCEEEEEECHhhhhC-hhhHHHhhhccCCCcCHHHHHHHHHHhC----CcEEEEecCCCCCCHHHH
Confidence 589999999998652 2211111 122233333332 268999999999998653
No 115
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=97.18 E-value=0.00032 Score=45.79 Aligned_cols=48 Identities=19% Similarity=0.025 Sum_probs=30.4
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|++.||+|+.+..+ .. .++...+.+..+ .+++++||.+|.|+.+.
T Consensus 107 ~piilv~nK~Dl~~~~~-~~---~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~l 154 (163)
T cd04136 107 VPMVLVGNKCDLEDERV-VS---REEGQALARQWG-----CPFYETSAKSKINVDEV 154 (163)
T ss_pred CCEEEEEECccccccce-ec---HHHHHHHHHHcC-----CeEEEecCCCCCCHHHH
Confidence 47899999999874111 11 112222333222 68999999999998653
No 116
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.17 E-value=0.00034 Score=49.05 Aligned_cols=47 Identities=19% Similarity=0.116 Sum_probs=32.5
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 18 GVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 18 Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
++++||+|+++....+.+.+.++++.+ +. ..+++++||++|+|+.+.
T Consensus 141 ~~~~~k~d~~~~~~~~~~~~~~~~~~~----~~---~~~i~~~Sa~~g~gi~el 187 (199)
T TIGR00101 141 LLVINKIDLAPMVGADLGVMERDAKKM----RG---EKPFIFTNLKTKEGLDTV 187 (199)
T ss_pred EEEEEhhhccccccccHHHHHHHHHHh----CC---CCCEEEEECCCCCCHHHH
Confidence 788999999853234444444444443 22 479999999999999654
No 117
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=97.15 E-value=0.00047 Score=45.07 Aligned_cols=52 Identities=29% Similarity=0.343 Sum_probs=31.2
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCC-CCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFR-DSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~-~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++++++||+|+.+. ...+++... ++...+. ....+++++||.+|.|+.+.
T Consensus 101 ~~piilv~nK~Dl~~~--~~~~~i~~~----~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 153 (160)
T cd04156 101 GVPVVLLANKQDLPGA--LTAEEITRR----FKLKKYCSDRDWYVQPCSAVTGEGLAEA 153 (160)
T ss_pred CCCEEEEEECcccccC--cCHHHHHHH----cCCcccCCCCcEEEEecccccCCChHHH
Confidence 3579999999998641 111222222 1111111 12468999999999999653
No 118
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=97.14 E-value=0.00058 Score=45.36 Aligned_cols=52 Identities=19% Similarity=0.066 Sum_probs=31.8
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.+++++.||+|+.+.... ..+.+++..+.+...- ..+++++||.+|.|+.+.
T Consensus 104 ~pviiv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~---~~~~~e~Sa~~~~~v~~l 155 (166)
T cd01893 104 VPIILVGNKSDLRDGSSQ--AGLEEEMLPIMNEFRE---IETCVECSAKTLINVSEV 155 (166)
T ss_pred CCEEEEEEchhcccccch--hHHHHHHHHHHHHHhc---ccEEEEeccccccCHHHH
Confidence 579999999999752111 1122333333332211 138999999999998653
No 119
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=97.13 E-value=0.00051 Score=45.54 Aligned_cols=49 Identities=20% Similarity=0.102 Sum_probs=31.9
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.+++++.||+|+.+..... .++...+.+..+ .+++++||.+|.|+.+.
T Consensus 106 ~~piivv~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~l 154 (165)
T cd01865 106 NAQVILVGNKCDMEDERVVS----SERGRQLADQLG-----FEFFEASAKENINVKQV 154 (165)
T ss_pred CCCEEEEEECcccCcccccC----HHHHHHHHHHcC-----CEEEEEECCCCCCHHHH
Confidence 35799999999997521111 122233333333 47999999999998654
No 120
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=97.12 E-value=0.00085 Score=43.15 Aligned_cols=48 Identities=29% Similarity=0.426 Sum_probs=31.2
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
.++++++||+|+.+ ......+..+.+.. ... ..+++++|+.++.++.+
T Consensus 112 ~~~iiv~nK~Dl~~-~~~~~~~~~~~~~~---~~~----~~~~~~~s~~~~~~~~~ 159 (168)
T cd04163 112 TPVILVLNKIDLVK-DKEDLLPLLEKLKE---LGP----FAEIFPISALKGENVDE 159 (168)
T ss_pred CCEEEEEEchhccc-cHHHHHHHHHHHHh---ccC----CCceEEEEeccCCChHH
Confidence 46899999999874 23333333333222 111 36899999999999855
No 121
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=97.11 E-value=0.00052 Score=47.69 Aligned_cols=50 Identities=22% Similarity=0.283 Sum_probs=32.3
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~ 72 (97)
.++|++.||+|+.+. +... .++++.+.++. + .++++++||.+|.|+.+.-
T Consensus 117 ~piiivgNK~Dl~~~---~~~~-~~~~~~~~~~~-~---~~~~~e~Sak~g~~v~~lf 166 (198)
T cd04142 117 PPIVVVGNKRDQQRH---RFAP-RHVLSVLVRKS-W---KCGYLECSAKYNWHILLLF 166 (198)
T ss_pred CCEEEEEECcccccc---cccc-HHHHHHHHHHh-c---CCcEEEecCCCCCCHHHHH
Confidence 478999999999641 1111 12233333222 1 3789999999999997753
No 122
>PLN00223 ADP-ribosylation factor; Provisional
Probab=97.10 E-value=0.00063 Score=46.41 Aligned_cols=52 Identities=19% Similarity=0.080 Sum_probs=31.4
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.+++++.||+|+.+.. .. +++...+.-..+.+....++++||.+|+|+.+.
T Consensus 118 ~~piilv~NK~Dl~~~~--~~----~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~ 169 (181)
T PLN00223 118 DAVLLVFANKQDLPNAM--NA----AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
T ss_pred CCCEEEEEECCCCCCCC--CH----HHHHHHhCccccCCCceEEEeccCCCCCCHHHH
Confidence 45799999999986421 11 222333311112223356789999999998654
No 123
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=97.10 E-value=0.001 Score=42.00 Aligned_cols=52 Identities=19% Similarity=0.222 Sum_probs=31.2
Q ss_pred CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 13 GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 13 Gvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
.-.++|+++||+|++.. ........... .. .......+++++||.+|.|+.+
T Consensus 103 ~~~~~ivv~nK~D~~~~--~~~~~~~~~~~-~~---~~~~~~~~~~~~sa~~~~~v~~ 154 (163)
T cd00880 103 RGKPVLLVLNKIDLLPE--EEEEELLELRL-LI---LLLLLGLPVIAVSALTGEGIDE 154 (163)
T ss_pred cCCeEEEEEEccccCCh--hhHHHHHHHHH-hh---cccccCCceEEEeeeccCCHHH
Confidence 34578999999999852 22221111001 11 1111357999999999998754
No 124
>PRK01889 GTPase RsgA; Reviewed
Probab=97.10 E-value=0.00054 Score=52.00 Aligned_cols=51 Identities=24% Similarity=0.328 Sum_probs=33.3
Q ss_pred eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
|+..|+++ |+++||+|+++. .+ +..+.+..+ . ...+++++|+.+|.|+.+.
T Consensus 138 a~~~~i~p-iIVLNK~DL~~~-~~---~~~~~~~~~----~---~g~~Vi~vSa~~g~gl~~L 188 (356)
T PRK01889 138 AWESGAEP-VIVLTKADLCED-AE---EKIAEVEAL----A---PGVPVLAVSALDGEGLDVL 188 (356)
T ss_pred HHHcCCCE-EEEEEChhcCCC-HH---HHHHHHHHh----C---CCCcEEEEECCCCccHHHH
Confidence 44578876 678999999862 11 111222222 1 1368999999999998664
No 125
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=97.10 E-value=0.0006 Score=53.11 Aligned_cols=45 Identities=31% Similarity=0.411 Sum_probs=30.4
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-++.|+++||+|+.+ .++. ++.+.+..+ .+++|+||.+|.|+.+.
T Consensus 274 ~kP~IVV~NK~DL~~-~~e~-------l~~l~~~l~-----~~i~~iSA~tgeGI~eL 318 (424)
T PRK12297 274 ERPQIVVANKMDLPE-AEEN-------LEEFKEKLG-----PKVFPISALTGQGLDEL 318 (424)
T ss_pred CCcEEEEEeCCCCcC-CHHH-------HHHHHHHhC-----CcEEEEeCCCCCCHHHH
Confidence 367899999999853 2222 222333222 47999999999998665
No 126
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=97.10 E-value=0.00041 Score=45.70 Aligned_cols=48 Identities=17% Similarity=0.023 Sum_probs=30.9
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|++.||+|+.+..... .++.+.+.+..+ .+++++||.+|.|+.+.
T Consensus 107 ~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~ 154 (164)
T cd04175 107 VPMILVGNKCDLEDERVVG----KEQGQNLARQWG-----CAFLETSAKAKINVNEI 154 (164)
T ss_pred CCEEEEEECCcchhccEEc----HHHHHHHHHHhC-----CEEEEeeCCCCCCHHHH
Confidence 4799999999987411100 112233333333 58999999999998654
No 127
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=97.08 E-value=0.00061 Score=45.11 Aligned_cols=48 Identities=23% Similarity=0.342 Sum_probs=31.8
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.+++++.||+|+.+..+.. .++...+.+..+ .+++++||.+|.|+.+.
T Consensus 108 ~~iiiv~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~e~Sa~~~~~i~e~ 155 (166)
T cd04122 108 TVIFLIGNKADLEAQRDVT----YEEAKQFADENG-----LLFLECSAKTGENVEDA 155 (166)
T ss_pred CeEEEEEECcccccccCcC----HHHHHHHHHHcC-----CEEEEEECCCCCCHHHH
Confidence 5799999999987421111 223333444333 58999999999998663
No 128
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=97.08 E-value=0.00033 Score=46.88 Aligned_cols=52 Identities=23% Similarity=0.278 Sum_probs=32.7
Q ss_pred CeEEEEEEcCCCCCCCHHHHH--------H-HHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQ--------E-IVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~--------~-i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|++.||+|+.+. ..... . ..++.+.+.+..+. .+++++||++|.|+.+.
T Consensus 105 ~piilv~nK~Dl~~~-~~~~~~~~~~~~~~v~~~~~~~~a~~~~~----~~~~e~Sa~~~~~v~~l 165 (173)
T cd04130 105 APIILVGTQADLRTD-VNVLIQLARYGEKPVSQSRAKALAEKIGA----CEYIECSALTQKNLKEV 165 (173)
T ss_pred CCEEEEeeChhhccC-hhHHHHHhhcCCCCcCHHHHHHHHHHhCC----CeEEEEeCCCCCCHHHH
Confidence 578999999998742 11100 0 11233444444432 48999999999998653
No 129
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.08 E-value=0.00032 Score=47.29 Aligned_cols=53 Identities=21% Similarity=0.149 Sum_probs=33.0
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|++.||.|+.+..........++.+.+.+..+. .+++++||.+|.|+.+.
T Consensus 106 ~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~v~~~ 158 (187)
T cd04132 106 TPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGA----FAYLECSAKTMENVEEV 158 (187)
T ss_pred CCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCC----cEEEEccCCCCCCHHHH
Confidence 479999999998741110000112334444444443 38999999999999764
No 130
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=97.07 E-value=0.0011 Score=51.10 Aligned_cols=50 Identities=16% Similarity=0.220 Sum_probs=32.7
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-++.|+++||+|+.+ ...+. +.++.+.+..++ ..+++|+||++|.|+.+.
T Consensus 275 ~kP~IlVlNKiDl~~--~~el~---~~l~~l~~~~~~---~~~Vi~ISA~tg~GIdeL 324 (390)
T PRK12298 275 EKPRWLVFNKIDLLD--EEEAE---ERAKAIVEALGW---EGPVYLISAASGLGVKEL 324 (390)
T ss_pred CCCEEEEEeCCccCC--hHHHH---HHHHHHHHHhCC---CCCEEEEECCCCcCHHHH
Confidence 367899999999874 22222 223333333332 237899999999999764
No 131
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=97.07 E-value=0.0004 Score=46.41 Aligned_cols=51 Identities=18% Similarity=0.138 Sum_probs=31.0
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCC-CCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGF-RDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~-~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|++.||+|+.+. .. .++++.+++..++ ......++++||++|.|+.+.
T Consensus 101 ~piilv~NK~Dl~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~ 152 (169)
T cd04158 101 ALLLIFANKQDVAGA--LS----VEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEG 152 (169)
T ss_pred CCEEEEEeCcCcccC--CC----HHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHH
Confidence 579999999998641 11 1223333321111 112357899999999999764
No 132
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=97.07 E-value=0.00083 Score=53.39 Aligned_cols=63 Identities=29% Similarity=0.356 Sum_probs=47.2
Q ss_pred CceeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCC--CceEEEeeeccCCCCCCCCC
Q psy15201 7 GKSAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDS--DIEYVPCSGLTGENLTTPSQ 73 (97)
Q Consensus 7 ~~~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~--~~~iipiSA~~G~ni~~~~~ 73 (97)
.||-.+|.++ ||||||+|+.+ .|.+++..++..++-.++-..+ +.|++..||++|.--..+..
T Consensus 114 kKAl~~gL~P-IVVvNKiDrp~---Arp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~ 178 (603)
T COG1217 114 KKALALGLKP-IVVINKIDRPD---ARPDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPED 178 (603)
T ss_pred HHHHHcCCCc-EEEEeCCCCCC---CCHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCccc
Confidence 3677789987 78899999875 5677778888887766664422 47999999999986555543
No 133
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=97.04 E-value=0.00014 Score=49.62 Aligned_cols=49 Identities=31% Similarity=0.470 Sum_probs=30.5
Q ss_pred ccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 11 VSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 11 ~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
.+|+ ++|+++||+|... +..+..-.+++.+.+ + +|++|+||.+|.|+.+
T Consensus 103 e~g~-P~vvvlN~~D~a~--~~g~~id~~~Ls~~L---g-----~pvi~~sa~~~~g~~~ 151 (156)
T PF02421_consen 103 ELGI-PVVVVLNKMDEAE--RKGIEIDAEKLSERL---G-----VPVIPVSARTGEGIDE 151 (156)
T ss_dssp HTTS-SEEEEEETHHHHH--HTTEEE-HHHHHHHH---T-----S-EEEEBTTTTBTHHH
T ss_pred HcCC-CEEEEEeCHHHHH--HcCCEECHHHHHHHh---C-----CCEEEEEeCCCcCHHH
Confidence 4665 6999999999763 111110112333333 4 6999999999999865
No 134
>PRK12288 GTPase RsgA; Reviewed
Probab=97.03 E-value=0.0013 Score=49.86 Aligned_cols=52 Identities=21% Similarity=0.224 Sum_probs=32.9
Q ss_pred ccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 11 VSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 11 ~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
..|+ +.|+++||+|+++. ++ ...+.+ ....++..+ .+++++||.+|.|+.+.
T Consensus 148 ~~~i-~~VIVlNK~DL~~~-~~-~~~~~~-~~~~y~~~g-----~~v~~vSA~tg~GideL 199 (347)
T PRK12288 148 TLGI-EPLIVLNKIDLLDD-EG-RAFVNE-QLDIYRNIG-----YRVLMVSSHTGEGLEEL 199 (347)
T ss_pred hcCC-CEEEEEECccCCCc-HH-HHHHHH-HHHHHHhCC-----CeEEEEeCCCCcCHHHH
Confidence 3565 45789999999852 21 122222 222334444 48999999999998664
No 135
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=97.02 E-value=0.00088 Score=45.20 Aligned_cols=51 Identities=22% Similarity=0.191 Sum_probs=30.7
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.+++++.||.|+.+- . ..++ +...+...........++|+||.+|.|+.+.
T Consensus 115 ~piilv~NK~Dl~~~-~-~~~~----i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~ 165 (175)
T smart00177 115 AVILVFANKQDLPDA-M-KAAE----ITEKLGLHSIRDRNWYIQPTCATSGDGLYEG 165 (175)
T ss_pred CcEEEEEeCcCcccC-C-CHHH----HHHHhCccccCCCcEEEEEeeCCCCCCHHHH
Confidence 479999999998741 1 1112 2222211112223467889999999999654
No 136
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=97.02 E-value=0.00062 Score=44.68 Aligned_cols=48 Identities=17% Similarity=0.098 Sum_probs=30.1
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.+++++.||+|+.+... .. .++...+.+..+ .+++++||.+|.|+.+.
T Consensus 107 ~piviv~nK~Dl~~~~~--~~--~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~l 154 (163)
T cd04176 107 VPIILVGNKVDLESERE--VS--SAEGRALAEEWG-----CPFMETSAKSKTMVNEL 154 (163)
T ss_pred CCEEEEEECccchhcCc--cC--HHHHHHHHHHhC-----CEEEEecCCCCCCHHHH
Confidence 47899999999864111 11 111222222222 58999999999998654
No 137
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=97.02 E-value=0.0011 Score=42.42 Aligned_cols=50 Identities=18% Similarity=0.066 Sum_probs=30.0
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
.++++++||+|+.+. ...+++ ...+..........+++++||.+|.|+.+
T Consensus 102 ~p~iiv~nK~D~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 151 (159)
T cd04159 102 IPLLVLGNKNDLPGA--LSVDEL----IEQMNLKSITDREVSCYSISCKEKTNIDI 151 (159)
T ss_pred CCEEEEEeCccccCC--cCHHHH----HHHhCcccccCCceEEEEEEeccCCChHH
Confidence 468999999998752 111111 11111001112347899999999999865
No 138
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=97.01 E-value=0.00084 Score=45.61 Aligned_cols=50 Identities=20% Similarity=0.215 Sum_probs=30.5
Q ss_pred CeEEEEEEcCCCCCC-CHHHHHHHHHHHHHHHHHhCCC-CCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSW-SQDRFQEIVTKLGAFLKQAGFR-DSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~-~~~~~~~i~~~l~~~l~~~~~~-~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|+++||+|+.+. +.+ ++..++...... ....+++|+||.+|.|+.+.
T Consensus 110 ~p~iiv~NK~D~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l 161 (183)
T cd04152 110 VPVLVLANKQDLPNALSVS-------EVEKLLALHELSASTPWHVQPACAIIGEGLQEG 161 (183)
T ss_pred CcEEEEEECcCccccCCHH-------HHHHHhCccccCCCCceEEEEeecccCCCHHHH
Confidence 579999999998641 111 122222111111 12367999999999998654
No 139
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=97.00 E-value=0.0007 Score=44.52 Aligned_cols=47 Identities=21% Similarity=0.251 Sum_probs=30.9
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
.+++++.||.|+.+..+.. .++.+.+.+.. ..+++++||.+|.|+.+
T Consensus 109 ~pi~vv~nK~Dl~~~~~~~----~~~~~~~~~~~-----~~~~~~~Sa~~~~~v~~ 155 (165)
T cd01868 109 IVIMLVGNKSDLRHLRAVP----TEEAKAFAEKN-----GLSFIETSALDGTNVEE 155 (165)
T ss_pred CeEEEEEECccccccccCC----HHHHHHHHHHc-----CCEEEEEECCCCCCHHH
Confidence 5799999999987421111 12333333332 26899999999999865
No 140
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=97.00 E-value=0.00056 Score=45.11 Aligned_cols=49 Identities=24% Similarity=0.285 Sum_probs=30.5
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-+++++++||+|+.. .....+.. ...... . ...+++++||.+|.|+.+.
T Consensus 120 ~~p~ivv~NK~Dl~~--~~~~~~~~--~~~~~~--~---~~~~~~~~Sa~~~~gl~~l 168 (176)
T cd01881 120 AKPVIYVLNKIDLDD--AEELEEEL--VRELAL--E---EGAEVVPISAKTEEGLDEL 168 (176)
T ss_pred hCCeEEEEEchhcCc--hhHHHHHH--HHHHhc--C---CCCCEEEEehhhhcCHHHH
Confidence 468999999999974 22222111 111111 1 2367999999999998653
No 141
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=97.00 E-value=0.00086 Score=45.11 Aligned_cols=50 Identities=24% Similarity=0.161 Sum_probs=32.3
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|++.||+|+.+. .......++...+.++.+ .+++++||.+|.|+.+.
T Consensus 107 ~~iilVgnK~Dl~~~--~~~~~~~~~~~~~~~~~~-----~~~~e~Sa~~g~~v~~l 156 (170)
T cd04108 107 VLLFLVGTKKDLSSP--AQYALMEQDAIKLAAEMQ-----AEYWSVSALSGENVREF 156 (170)
T ss_pred CeEEEEEEChhcCcc--ccccccHHHHHHHHHHcC-----CeEEEEECCCCCCHHHH
Confidence 458999999998742 111112233344444333 58899999999998764
No 142
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=96.99 E-value=0.00067 Score=45.84 Aligned_cols=51 Identities=22% Similarity=0.145 Sum_probs=30.9
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCC-----------CCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGF-----------RDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~-----------~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|+++||+|+.+ . ...++ ++.+++.... .....+++++||.+|.|+.+.
T Consensus 121 ~pvivv~NK~Dl~~-~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~ 182 (190)
T cd00879 121 VPFLILGNKIDLPG-A-VSEEE----LRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEA 182 (190)
T ss_pred CCEEEEEeCCCCCC-C-cCHHH----HHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHH
Confidence 57999999999864 1 11122 2333321110 012367999999999998654
No 143
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=96.98 E-value=0.0017 Score=42.92 Aligned_cols=45 Identities=22% Similarity=0.159 Sum_probs=29.8
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|++.||+|+.+ .. .++...+.+.. ..+++++||.+|.|+.+.
T Consensus 105 ~p~ivv~nK~Dl~~---~~----~~~~~~~~~~~-----~~~~~~~Sa~~~~gv~~l 149 (161)
T cd04124 105 IPCIVVANKIDLDP---SV----TQKKFNFAEKH-----NLPLYYVSAADGTNVVKL 149 (161)
T ss_pred CcEEEEEECccCch---hH----HHHHHHHHHHc-----CCeEEEEeCCCCCCHHHH
Confidence 57999999999853 11 11122222222 268999999999998654
No 144
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=96.97 E-value=0.0013 Score=44.94 Aligned_cols=53 Identities=21% Similarity=0.226 Sum_probs=32.1
Q ss_pred CeEEEEEEcCCCCCCCHHH--HHH------HHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDR--FQE------IVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~--~~~------i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|++.||+|+.+..+.. ... ..++...+.+..+ ..+++++||.+|.|+.+.
T Consensus 105 ~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~e~SAk~~~~v~e~ 165 (189)
T cd04134 105 VKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRIN----ALRYLECSAKLNRGVNEA 165 (189)
T ss_pred CCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcC----CCEEEEccCCcCCCHHHH
Confidence 4799999999987521111 000 0122233333322 268999999999999764
No 145
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=96.97 E-value=0.0016 Score=43.96 Aligned_cols=52 Identities=29% Similarity=0.427 Sum_probs=32.9
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHH---------HHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEI---------VTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i---------~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|++.||+|+.+ .....+.+ .++.+.+.+..+ ..+++++||.+|.|+.+.
T Consensus 106 ~piilvgnK~Dl~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~e~Sa~~~~~i~~~ 166 (174)
T cd01871 106 TPIILVGTKLDLRD-DKDTIEKLKEKKLTPITYPQGLAMAKEIG----AVKYLECSALTQKGLKTV 166 (174)
T ss_pred CCEEEEeeChhhcc-ChhhHHHHhhccCCCCCHHHHHHHHHHcC----CcEEEEecccccCCHHHH
Confidence 57999999999864 22212211 122333444333 258999999999998653
No 146
>PRK15494 era GTPase Era; Provisional
Probab=96.96 E-value=0.00083 Score=50.58 Aligned_cols=49 Identities=27% Similarity=0.385 Sum_probs=31.1
Q ss_pred cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.+. +.|+++||+|+.+ . ... ++..+++... ...+++|+||++|.|+.+.
T Consensus 159 ~~~-p~IlViNKiDl~~--~-~~~----~~~~~l~~~~---~~~~i~~iSAktg~gv~eL 207 (339)
T PRK15494 159 LNI-VPIFLLNKIDIES--K-YLN----DIKAFLTENH---PDSLLFPISALSGKNIDGL 207 (339)
T ss_pred cCC-CEEEEEEhhcCcc--c-cHH----HHHHHHHhcC---CCcEEEEEeccCccCHHHH
Confidence 344 4578999999874 1 222 2333333222 2368999999999998654
No 147
>PRK00098 GTPase RsgA; Reviewed
Probab=96.95 E-value=0.00087 Score=49.61 Aligned_cols=49 Identities=24% Similarity=0.397 Sum_probs=32.3
Q ss_pred cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++ ++|+++||+|+++ +.+..+ +....++..+ .+++++||.+|.|+.+.
T Consensus 110 ~~i-p~iIVlNK~DL~~-~~~~~~----~~~~~~~~~g-----~~v~~vSA~~g~gi~~L 158 (298)
T PRK00098 110 NGI-KPIIVLNKIDLLD-DLEEAR----ELLALYRAIG-----YDVLELSAKEGEGLDEL 158 (298)
T ss_pred CCC-CEEEEEEhHHcCC-CHHHHH----HHHHHHHHCC-----CeEEEEeCCCCccHHHH
Confidence 354 5788999999974 222222 2223334444 48999999999998765
No 148
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=96.95 E-value=0.0016 Score=47.02 Aligned_cols=50 Identities=18% Similarity=0.293 Sum_probs=31.9
Q ss_pred cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCC
Q psy15201 12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72 (97)
Q Consensus 12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~ 72 (97)
.++ ++|+++||+|+.+. .. .. .+.++ .++..+ .+++.+||.+|.|+.+..
T Consensus 66 ~~i-~~vIV~NK~DL~~~-~~-~~--~~~~~-~~~~~g-----~~v~~~SAktg~gi~eLf 115 (245)
T TIGR00157 66 QNI-EPIIVLNKIDLLDD-ED-ME--KEQLD-IYRNIG-----YQVLMTSSKNQDGLKELI 115 (245)
T ss_pred CCC-CEEEEEECcccCCC-HH-HH--HHHHH-HHHHCC-----CeEEEEecCCchhHHHHH
Confidence 344 57889999999752 21 11 12222 333333 589999999999987653
No 149
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=96.94 E-value=0.00077 Score=44.64 Aligned_cols=48 Identities=17% Similarity=0.060 Sum_probs=29.8
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.+++++.||+|+.+..+-.. ++...+.+.. ..+++++||.+|.|+.+.
T Consensus 109 ~piilv~nK~Dl~~~~~v~~----~~~~~~~~~~-----~~~~~e~SA~~g~~v~~~ 156 (165)
T cd04140 109 IPIMLVGNKCDESHKREVSS----NEGAACATEW-----NCAFMETSAKTNHNVQEL 156 (165)
T ss_pred CCEEEEEECccccccCeecH----HHHHHHHHHh-----CCcEEEeecCCCCCHHHH
Confidence 47899999999864111111 1112222222 258899999999998654
No 150
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.94 E-value=0.001 Score=44.08 Aligned_cols=51 Identities=29% Similarity=0.314 Sum_probs=30.2
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++++++||+|+.+. ...+++.+. ++...+.....+++++||.+|+|+.+.
T Consensus 116 ~p~ivv~nK~D~~~~--~~~~~i~~~----l~~~~~~~~~~~~~~~Sa~~~~gi~~~ 166 (173)
T cd04155 116 VPVLVFANKQDLATA--APAEEIAEA----LNLHDLRDRTWHIQACSAKTGEGLQEG 166 (173)
T ss_pred CCEEEEEECCCCccC--CCHHHHHHH----cCCcccCCCeEEEEEeECCCCCCHHHH
Confidence 578999999998741 112222221 211112122357899999999998653
No 151
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=96.93 E-value=0.00086 Score=44.83 Aligned_cols=47 Identities=19% Similarity=0.224 Sum_probs=31.0
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++|++.||+|+.+. +. ..+...+.+. ...+++++||.+|.|+.+.
T Consensus 104 ~~piiiv~nK~Dl~~~-~~-----~~~~~~~~~~-----~~~~~~e~Sa~~~~~v~~~ 150 (166)
T cd00877 104 NIPIVLCGNKVDIKDR-KV-----KAKQITFHRK-----KNLQYYEISAKSNYNFEKP 150 (166)
T ss_pred CCcEEEEEEchhcccc-cC-----CHHHHHHHHH-----cCCEEEEEeCCCCCChHHH
Confidence 4679999999998731 11 1111222222 1368999999999999765
No 152
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=96.93 E-value=0.0015 Score=42.68 Aligned_cols=47 Identities=15% Similarity=0.109 Sum_probs=30.5
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.+++++.||+|+..... . .++...+.+..+ .+++++||.+|.|+.+.
T Consensus 107 ~~~~iv~nK~D~~~~~~-~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~~ 153 (161)
T cd01863 107 IVKMLVGNKIDKENREV-T----REEGLKFARKHN-----MLFIETSAKTRDGVQQA 153 (161)
T ss_pred CcEEEEEECCccccccc-C----HHHHHHHHHHcC-----CEEEEEecCCCCCHHHH
Confidence 45789999999874211 1 122333333323 68999999999998653
No 153
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=96.93 E-value=0.00094 Score=44.36 Aligned_cols=49 Identities=18% Similarity=0.068 Sum_probs=31.2
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|++.||+|+.+..... .++...+.+..+ ..+++++||++|.|+.+.
T Consensus 107 ~piiiv~nK~D~~~~~~~~----~~~~~~~~~~~~----~~~~~~~SA~~~~~i~~~ 155 (168)
T cd04177 107 VPMVLVGNKADLEDDRQVS----REDGVSLSQQWG----NVPFYETSARKRTNVDEV 155 (168)
T ss_pred CCEEEEEEChhccccCccC----HHHHHHHHHHcC----CceEEEeeCCCCCCHHHH
Confidence 4688999999987421111 122223333333 368999999999998653
No 154
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=96.92 E-value=0.00099 Score=45.42 Aligned_cols=52 Identities=21% Similarity=0.103 Sum_probs=31.3
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++|++.||.|+.+.. ..++ +...+....++.....++++||++|.|+.++
T Consensus 118 ~~piilv~NK~Dl~~~~--~~~~----i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~ 169 (182)
T PTZ00133 118 DAVLLVFANKQDLPNAM--STTE----VTEKLGLHSVRQRNWYIQGCCATTAQGLYEG 169 (182)
T ss_pred CCCEEEEEeCCCCCCCC--CHHH----HHHHhCCCcccCCcEEEEeeeCCCCCCHHHH
Confidence 46799999999986411 1112 2222211112223457889999999999764
No 155
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=96.92 E-value=0.00087 Score=45.74 Aligned_cols=48 Identities=23% Similarity=0.229 Sum_probs=30.9
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|++.||+|+.+..+-. ..+...+.+..+ .+++++||.+|.|+.+.
T Consensus 107 ~piilvgNK~Dl~~~~~v~----~~~~~~~~~~~~-----~~~~e~SAk~~~~v~~l 154 (190)
T cd04144 107 VPIMIVGNKCDKVYEREVS----TEEGAALARRLG-----CEFIEASAKTNVNVERA 154 (190)
T ss_pred CCEEEEEEChhccccCccC----HHHHHHHHHHhC-----CEEEEecCCCCCCHHHH
Confidence 4789999999987411111 112233333333 58999999999998654
No 156
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=96.90 E-value=0.002 Score=44.20 Aligned_cols=52 Identities=23% Similarity=0.322 Sum_probs=32.7
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHH---------HHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIV---------TKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~---------~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|++.||.|+.+. ....+++. ++.+.+.+..+ ..+++++||.+|.|+.+.
T Consensus 108 ~piilvgNK~DL~~~-~~~~~~~~~~~~~~v~~~~~~~~a~~~~----~~~~~e~SAk~g~~v~e~ 168 (191)
T cd01875 108 VPILLVGTKKDLRND-ADTLKKLKEQGQAPITPQQGGALAKQIH----AVKYLECSALNQDGVKEV 168 (191)
T ss_pred CCEEEEEeChhhhcC-hhhHHHHhhccCCCCCHHHHHHHHHHcC----CcEEEEeCCCCCCCHHHH
Confidence 579999999998652 11111111 22333443333 258999999999999664
No 157
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=96.90 E-value=0.001 Score=45.60 Aligned_cols=43 Identities=26% Similarity=0.271 Sum_probs=29.5
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|+++||+|+.+. .... .... . ...+++++||.+|.|+.+.
T Consensus 154 ~~viiV~NK~Dl~~~--~~~~-------~~~~--~---~~~~~~~~Sa~~~~gi~~l 196 (204)
T cd01878 154 IPMILVLNKIDLLDD--EELE-------ERLE--A---GRPDAVFISAKTGEGLDEL 196 (204)
T ss_pred CCEEEEEEccccCCh--HHHH-------HHhh--c---CCCceEEEEcCCCCCHHHH
Confidence 579999999999752 2111 1121 1 2368999999999998653
No 158
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=96.89 E-value=0.0011 Score=43.67 Aligned_cols=47 Identities=21% Similarity=0.225 Sum_probs=28.7
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
.++|++.||+|+.+. .+...+..+ .+.+.. ..+++++||.+|.|+.+
T Consensus 113 ~~~i~v~NK~D~~~~-~~i~~~~~~---~~~~~~-----~~~~~~~Sa~~~~gv~~ 159 (169)
T cd04114 113 VITILVGNKIDLAER-REVSQQRAE---EFSDAQ-----DMYYLETSAKESDNVEK 159 (169)
T ss_pred CeEEEEEECcccccc-cccCHHHHH---HHHHHc-----CCeEEEeeCCCCCCHHH
Confidence 357899999998741 111111112 222211 26899999999999865
No 159
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=96.89 E-value=0.001 Score=44.16 Aligned_cols=48 Identities=19% Similarity=0.098 Sum_probs=31.1
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|++.||+|+.+..+.. .++...+.+..+ .+++++||.+|.|+.+.
T Consensus 109 ~p~iiv~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~ 156 (167)
T cd01867 109 VERMLVGNKCDMEEKRVVS----KEEGEALADEYG-----IKFLETSAKANINVEEA 156 (167)
T ss_pred CcEEEEEECcccccccCCC----HHHHHHHHHHcC-----CEEEEEeCCCCCCHHHH
Confidence 4789999999997411111 122333343322 58999999999998653
No 160
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=96.88 E-value=0.00084 Score=44.82 Aligned_cols=48 Identities=25% Similarity=0.244 Sum_probs=31.8
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|++.||+|+.+..+-. .++.+.+.+..+ .+++++||.+|.|+.+.
T Consensus 121 ~piiiv~nK~Dl~~~~~v~----~~~~~~~~~~~~-----~~~~e~Sak~~~~v~~l 168 (180)
T cd04127 121 PDIVLCGNKADLEDQRQVS----EEQAKALADKYG-----IPYFETSAATGTNVEKA 168 (180)
T ss_pred CcEEEEEeCccchhcCccC----HHHHHHHHHHcC-----CeEEEEeCCCCCCHHHH
Confidence 4689999999987411101 123344444433 58999999999998654
No 161
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=96.85 E-value=0.0012 Score=43.07 Aligned_cols=49 Identities=20% Similarity=0.203 Sum_probs=31.2
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++|++.||+|+.+..... .++.+.+.+..+ .+++++||.+|.|+.+.
T Consensus 110 ~~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l 158 (168)
T cd04119 110 NIVVVVCANKIDLTKHRAVS----EDEGRLWAESKG-----FKYFETSACTGEGVNEM 158 (168)
T ss_pred CceEEEEEEchhcccccccC----HHHHHHHHHHcC-----CeEEEEECCCCCCHHHH
Confidence 36799999999987311101 122222333323 57999999999998653
No 162
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=96.85 E-value=0.001 Score=48.01 Aligned_cols=51 Identities=14% Similarity=0.045 Sum_probs=33.1
Q ss_pred CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 13 GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 13 Gvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.-.++|++.||+|+....+.. .+++..++... ...+++++||.+|.|+.+.
T Consensus 112 ~~~piIivgNK~Dl~~~~~v~----~~ei~~~~~~~----~~~~~~evSAktg~gI~el 162 (247)
T cd04143 112 VKIPMVICGNKADRDFPREVQ----RDEVEQLVGGD----ENCAYFEVSAKKNSNLDEM 162 (247)
T ss_pred CCCcEEEEEECccchhccccC----HHHHHHHHHhc----CCCEEEEEeCCCCCCHHHH
Confidence 346899999999986411111 23344444321 1368999999999999764
No 163
>KOG1489|consensus
Probab=96.85 E-value=0.00059 Score=51.80 Aligned_cols=51 Identities=24% Similarity=0.277 Sum_probs=33.6
Q ss_pred eccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 10 AVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 10 ~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
+.|.-++.++|+||+|+.+ .++.+ +.++.+.+. +..++|+||..|+|+.++
T Consensus 308 k~L~~rp~liVaNKiD~~e-ae~~~------l~~L~~~lq----~~~V~pvsA~~~egl~~l 358 (366)
T KOG1489|consen 308 KGLADRPALIVANKIDLPE-AEKNL------LSSLAKRLQ----NPHVVPVSAKSGEGLEEL 358 (366)
T ss_pred hhhccCceEEEEeccCchh-HHHHH------HHHHHHHcC----CCcEEEeeeccccchHHH
Confidence 3467788999999999853 22211 233333322 236999999999998654
No 164
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=96.85 E-value=0.00073 Score=45.35 Aligned_cols=50 Identities=18% Similarity=0.126 Sum_probs=31.0
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++|+++||+|+.+. .... ..+.+.+.+..++ .+++++||.+|.|+.+.
T Consensus 108 ~~p~iiv~NK~Dl~~~-~~~~---~~~~~~~~~~~~~----~~~~~~Sa~~~~~v~~l 157 (169)
T cd01892 108 EIPCLFVAAKADLDEQ-QQRY---EVQPDEFCRKLGL----PPPLHFSSKLGDSSNEL 157 (169)
T ss_pred CCeEEEEEEccccccc-cccc---ccCHHHHHHHcCC----CCCEEEEeccCccHHHH
Confidence 3589999999998641 1110 1122333343443 24589999999998653
No 165
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=96.84 E-value=0.0013 Score=45.89 Aligned_cols=48 Identities=23% Similarity=0.147 Sum_probs=31.3
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|++.||+|+.+..+ ...++.+.+.+..+ .+++++||++|+|+.+.
T Consensus 110 ~piilVgNK~DL~~~~~----v~~~~~~~~~~~~~-----~~~~~iSAktg~gv~~l 157 (215)
T cd04109 110 PLVVLVGNKTDLEHNRT----VKDDKHARFAQANG-----MESCLVSAKTGDRVNLL 157 (215)
T ss_pred ceEEEEEECcccccccc----cCHHHHHHHHHHcC-----CEEEEEECCCCCCHHHH
Confidence 35889999999874111 11223334444333 57899999999999765
No 166
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=96.83 E-value=0.0017 Score=41.44 Aligned_cols=49 Identities=24% Similarity=0.220 Sum_probs=32.3
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++++++||+|+....+.. .++++.+.+.. ..+++.+||.+|.|+.+.
T Consensus 105 ~~p~ivv~nK~D~~~~~~~~----~~~~~~~~~~~-----~~~~~~~sa~~~~~i~~~ 153 (159)
T cd00154 105 NIPIILVGNKIDLEDQRQVS----TEEAQQFAKEN-----GLLFFETSAKTGENVEEL 153 (159)
T ss_pred CCcEEEEEEccccccccccc----HHHHHHHHHHc-----CCeEEEEecCCCCCHHHH
Confidence 46799999999986211212 23334444432 268999999999998653
No 167
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=96.82 E-value=0.00096 Score=44.96 Aligned_cols=48 Identities=15% Similarity=0.086 Sum_probs=31.5
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|++.||+|+.+. .... .++.+.+.+..+ .+++++||++|.|+.++
T Consensus 108 ~piilvgNK~Dl~~~--~~v~--~~~~~~~a~~~~-----~~~~e~Sa~~~~~v~~~ 155 (172)
T cd04141 108 IPLVLVGNKVDLESQ--RQVT--TEEGRNLAREFN-----CPFFETSAALRHYIDDA 155 (172)
T ss_pred CCEEEEEEChhhhhc--CccC--HHHHHHHHHHhC-----CEEEEEecCCCCCHHHH
Confidence 479999999998641 1111 122333333333 68999999999999765
No 168
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=96.82 E-value=0.001 Score=44.47 Aligned_cols=48 Identities=19% Similarity=0.118 Sum_probs=30.5
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|+++||+|+....+... ++...+.+..+ .+++++||.+|.|+.+.
T Consensus 107 ~p~ilv~NK~Dl~~~~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~l 154 (180)
T cd04137 107 VPIVLVGNKSDLHTQRQVST----EEGKELAESWG-----AAFLESSARENENVEEA 154 (180)
T ss_pred CCEEEEEEchhhhhcCccCH----HHHHHHHHHcC-----CeEEEEeCCCCCCHHHH
Confidence 36899999999864111111 12233333222 58999999999998654
No 169
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=96.82 E-value=0.0015 Score=44.15 Aligned_cols=47 Identities=13% Similarity=0.198 Sum_probs=30.3
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-++.|+++||+|+++ ++...+ ...+++..+ .+++++||.+|.|+.+.
T Consensus 46 ~k~~ilVlNK~Dl~~--~~~~~~----~~~~~~~~~-----~~vi~iSa~~~~gi~~L 92 (171)
T cd01856 46 NKPRIIVLNKADLAD--PKKTKK----WLKYFESKG-----EKVLFVNAKSGKGVKKL 92 (171)
T ss_pred CCCEEEEEehhhcCC--hHHHHH----HHHHHHhcC-----CeEEEEECCCcccHHHH
Confidence 367899999999974 222111 112232221 47899999999988653
No 170
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=96.82 E-value=0.0019 Score=49.40 Aligned_cols=52 Identities=27% Similarity=0.315 Sum_probs=35.8
Q ss_pred cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
|--|+.|+|.||||.+. +++.+++.++.+.... +. .+..+|||+++.|+.+.
T Consensus 273 L~~K~~ivv~NKiD~~~-~~e~~~~~~~~l~~~~---~~----~~~~~ISa~t~~g~~~L 324 (369)
T COG0536 273 LAEKPRIVVLNKIDLPL-DEEELEELKKALAEAL---GW----EVFYLISALTREGLDEL 324 (369)
T ss_pred hccCceEEEEeccCCCc-CHHHHHHHHHHHHHhc---CC----CcceeeehhcccCHHHH
Confidence 45578899999999765 5666666655554432 22 34445999999998654
No 171
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=96.81 E-value=0.0012 Score=42.67 Aligned_cols=48 Identities=21% Similarity=0.091 Sum_probs=32.3
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
-.++++++||+|+.+..+.. .+++..+.++.+ .+++++||.+|.|+.+
T Consensus 104 ~~p~ivv~nK~D~~~~~~~~----~~~~~~~~~~~~-----~~~~~~S~~~~~~i~~ 151 (160)
T cd00876 104 DIPIVLVGNKCDLENERQVS----KEEGKALAKEWG-----CPFIETSAKDNINIDE 151 (160)
T ss_pred CCcEEEEEECCcccccceec----HHHHHHHHHHcC-----CcEEEeccCCCCCHHH
Confidence 56899999999987511111 233444444333 5899999999999865
No 172
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=96.81 E-value=0.001 Score=45.43 Aligned_cols=48 Identities=19% Similarity=0.142 Sum_probs=31.2
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|++.||+|+.+..+.. .++.+.+.+..+ .+++++||.+|.|+.+.
T Consensus 107 ~piiiv~NK~Dl~~~~~~~----~~~~~~l~~~~~-----~~~~e~Sa~~~~~v~~l 154 (191)
T cd04112 107 VVIMLLGNKADMSGERVVK----REDGERLAKEYG-----VPFMETSAKTGLNVELA 154 (191)
T ss_pred CcEEEEEEcccchhccccC----HHHHHHHHHHcC-----CeEEEEeCCCCCCHHHH
Confidence 4799999999986311100 122333333333 58999999999998664
No 173
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=96.80 E-value=0.0012 Score=42.76 Aligned_cols=49 Identities=20% Similarity=0.150 Sum_probs=31.4
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++++++||+|+.+..+... +++..+.+..+ .+++++||.+|.|+.+.
T Consensus 105 ~~piiiv~nK~D~~~~~~~~~----~~~~~~~~~~~-----~~~~~~s~~~~~gi~~~ 153 (162)
T cd04123 105 NISLVIVGNKIDLERQRVVSK----SEAEEYAKSVG-----AKHFETSAKTGKGIEEL 153 (162)
T ss_pred CCeEEEEEECcccccccCCCH----HHHHHHHHHcC-----CEEEEEeCCCCCCHHHH
Confidence 357999999999874111111 22333333333 57899999999998654
No 174
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=96.80 E-value=0.00099 Score=43.91 Aligned_cols=48 Identities=19% Similarity=0.163 Sum_probs=30.9
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|++.||+|+.+...-. .++...+.+..+ .+++++||.+|.|+.+.
T Consensus 108 ~~~iiv~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~ 155 (166)
T cd01869 108 VNKLLVGNKCDLTDKRVVD----YSEAQEFADELG-----IPFLETSAKNATNVEQA 155 (166)
T ss_pred CcEEEEEEChhcccccCCC----HHHHHHHHHHcC-----CeEEEEECCCCcCHHHH
Confidence 4789999999986411111 122233333322 68999999999998754
No 175
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=96.80 E-value=0.0018 Score=46.18 Aligned_cols=37 Identities=27% Similarity=0.369 Sum_probs=28.1
Q ss_pred ccCCCeEEEEEEcCCCC------C--CCHHHHHHHHHHHHHHHHHh
Q psy15201 11 VSGVNQLGVVINKLDTV------S--WSQDRFQEIVTKLGAFLKQA 48 (97)
Q Consensus 11 ~lGvk~~Iv~INK~D~v------~--~~~~~~~~i~~~l~~~l~~~ 48 (97)
..|+ ++|+++||+|+. + +...++.++.+++..++++.
T Consensus 123 ~~~~-p~ilviNKiD~~~~e~~~~~~~~~~~~~~ii~~~n~~i~~~ 167 (222)
T cd01885 123 KERV-KPVLVINKIDRLILELKLSPEEAYQRLARIIEQVNAIIGTY 167 (222)
T ss_pred HcCC-CEEEEEECCCcchhhhcCCHHHHHHHHHHHHHHHhHHHHhc
Confidence 3566 689999999976 1 33568888888888888765
No 176
>PRK13768 GTPase; Provisional
Probab=96.80 E-value=0.0017 Score=47.00 Aligned_cols=52 Identities=27% Similarity=0.351 Sum_probs=32.1
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHH------------------------HHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLG------------------------AFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~------------------------~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
.++|+++||+|+++.++ .++..+.+. ..++..+. ..+++|+||.++.|+.+
T Consensus 163 ~~~i~v~nK~D~~~~~~--~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~---~~~vi~iSa~~~~gl~~ 237 (253)
T PRK13768 163 LPQIPVLNKADLLSEEE--LERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGL---PVRVIPVSAKTGEGFDE 237 (253)
T ss_pred CCEEEEEEhHhhcCchh--HHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCC---CCcEEEEECCCCcCHHH
Confidence 46899999999986322 222222221 12333332 36899999999999865
Q ss_pred C
Q psy15201 71 P 71 (97)
Q Consensus 71 ~ 71 (97)
.
T Consensus 238 L 238 (253)
T PRK13768 238 L 238 (253)
T ss_pred H
Confidence 3
No 177
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=96.79 E-value=0.0013 Score=42.96 Aligned_cols=48 Identities=19% Similarity=0.095 Sum_probs=31.2
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++++++||+|+.+..+.. .++...+.+.. ..+++++||.+|.|+.+.
T Consensus 106 ~~iilv~nK~D~~~~~~~~----~~~~~~~~~~~-----~~~~~~~Sa~~~~~v~~l 153 (161)
T cd01861 106 VIIVLVGNKTDLSDKRQVS----TEEGEKKAKEL-----NAMFIETSAKAGHNVKEL 153 (161)
T ss_pred CEEEEEEEChhccccCccC----HHHHHHHHHHh-----CCEEEEEeCCCCCCHHHH
Confidence 5799999999986321111 12223333322 268999999999998664
No 178
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=96.79 E-value=0.00098 Score=43.69 Aligned_cols=48 Identities=21% Similarity=0.304 Sum_probs=29.8
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|+++||+|+.+..+ ... ++.+.+.... ..+++++||.+|.|+.++
T Consensus 108 ~p~ilv~nK~Dl~~~~~--~~~--~~~~~~~~~~-----~~~~~~~Sa~~~~gi~~l 155 (164)
T cd04101 108 MPGVLVGNKMDLADKAE--VTD--AQAQAFAQAN-----QLKFFKTSALRGVGYEEP 155 (164)
T ss_pred CCEEEEEECcccccccC--CCH--HHHHHHHHHc-----CCeEEEEeCCCCCChHHH
Confidence 47899999999874211 110 1112222222 258999999999998654
No 179
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=96.75 E-value=0.0039 Score=48.78 Aligned_cols=57 Identities=33% Similarity=0.494 Sum_probs=44.6
Q ss_pred cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhC-CC-------------------CCCceEEEeeeccCCCCCCC
Q psy15201 12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAG-FR-------------------DSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~-~~-------------------~~~~~iipiSA~~G~ni~~~ 71 (97)
++. |+||++||+|.++ .++++.+.+++..+|+..+ .+ ..-+||+.+|+.+|++++-.
T Consensus 254 ~~l-PviVvvTK~D~~~--ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL 330 (527)
T COG5258 254 MEL-PVIVVVTKIDMVP--DDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLL 330 (527)
T ss_pred hcC-CEEEEEEecccCc--HHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHH
Confidence 455 6899999999994 7899999999999887544 10 11269999999999998543
No 180
>PRK05433 GTP-binding protein LepA; Provisional
Probab=96.75 E-value=0.0022 Score=51.92 Aligned_cols=50 Identities=18% Similarity=0.256 Sum_probs=33.0
Q ss_pred cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
.++ ++|+++||+|+.+. ..+++.+++...+ ++. ..+++++||.+|.|+.+
T Consensus 125 ~~l-piIvViNKiDl~~a---~~~~v~~ei~~~l---g~~--~~~vi~iSAktG~GI~~ 174 (600)
T PRK05433 125 NDL-EIIPVLNKIDLPAA---DPERVKQEIEDVI---GID--ASDAVLVSAKTGIGIEE 174 (600)
T ss_pred CCC-CEEEEEECCCCCcc---cHHHHHHHHHHHh---CCC--cceEEEEecCCCCCHHH
Confidence 455 48999999998742 2233334444433 442 24689999999999854
No 181
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=96.73 E-value=0.0011 Score=42.65 Aligned_cols=43 Identities=26% Similarity=0.200 Sum_probs=30.1
Q ss_pred CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 13 GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 13 Gvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
..+++|+++||+|+.+. ... .. .....+++++||.+|.|+.+.
T Consensus 106 ~~~~vi~v~nK~D~~~~-~~~-----------~~----~~~~~~~~~~Sa~~~~~v~~l 148 (157)
T cd04164 106 ADKPIIVVLNKSDLLPD-SEL-----------LS----LLAGKPIIAISAKTGEGLDEL 148 (157)
T ss_pred cCCCEEEEEEchhcCCc-ccc-----------cc----ccCCCceEEEECCCCCCHHHH
Confidence 45789999999999852 111 11 112368999999999998653
No 182
>PTZ00099 rab6; Provisional
Probab=96.73 E-value=0.0011 Score=45.27 Aligned_cols=48 Identities=15% Similarity=0.057 Sum_probs=30.3
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|++.||+|+.+..+ .. .++...+.+..+ ..++++||++|.|+.+.
T Consensus 86 ~piilVgNK~DL~~~~~--v~--~~e~~~~~~~~~-----~~~~e~SAk~g~nV~~l 133 (176)
T PTZ00099 86 VIIALVGNKTDLGDLRK--VT--YEEGMQKAQEYN-----TMFHETSAKAGHNIKVL 133 (176)
T ss_pred CeEEEEEECcccccccC--CC--HHHHHHHHHHcC-----CEEEEEECCCCCCHHHH
Confidence 46899999999864111 11 112223333222 57899999999999765
No 183
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=96.71 E-value=0.001 Score=45.27 Aligned_cols=53 Identities=21% Similarity=0.199 Sum_probs=31.2
Q ss_pred CeEEEEEEcCCCCC-CCHHHHHHHHHHHHHHHHHhC----CCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVS-WSQDRFQEIVTKLGAFLKQAG----FRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~-~~~~~~~~i~~~l~~~l~~~~----~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++++++||+|+.. .+. +++++.+.- .+... .......++|+||++|.|+.+.
T Consensus 119 ~piliv~NK~Dl~~~~~~---~~i~~~l~l-~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~ 176 (184)
T smart00178 119 VPFLILGNKIDAPYAASE---DELRYALGL-TNTTGSKGKVGVRPLEVFMCSVVRRMGYGEG 176 (184)
T ss_pred CCEEEEEeCccccCCCCH---HHHHHHcCC-CcccccccccCCceeEEEEeecccCCChHHH
Confidence 57999999999863 122 223332220 00000 0113468999999999998653
No 184
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=96.71 E-value=0.0031 Score=50.94 Aligned_cols=50 Identities=22% Similarity=0.317 Sum_probs=32.9
Q ss_pred cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
.++ ++|+++||+|+.+.+. +++.+++...+ ++. ..+++++||.+|.|+.+
T Consensus 121 ~~i-piIiViNKiDl~~~~~---~~~~~el~~~l---g~~--~~~vi~vSAktG~GI~~ 170 (595)
T TIGR01393 121 NDL-EIIPVINKIDLPSADP---ERVKKEIEEVI---GLD--ASEAILASAKTGIGIEE 170 (595)
T ss_pred cCC-CEEEEEECcCCCccCH---HHHHHHHHHHh---CCC--cceEEEeeccCCCCHHH
Confidence 455 5899999999875322 23334444333 432 24689999999999854
No 185
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=96.65 E-value=0.002 Score=44.43 Aligned_cols=49 Identities=20% Similarity=-0.007 Sum_probs=32.2
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
..+++++.||+|+.+... .. .++...+.+..+ .+++++||.+|.|+.+.
T Consensus 110 ~~piivVgNK~Dl~~~~~-~~---~~~~~~~~~~~~-----~~~~e~Sa~~~~gi~~l 158 (199)
T cd04110 110 DVCKVLVGNKNDDPERKV-VE---TEDAYKFAGQMG-----ISLFETSAKENINVEEM 158 (199)
T ss_pred CCCEEEEEECcccccccc-cC---HHHHHHHHHHcC-----CEEEEEECCCCcCHHHH
Confidence 457899999999875211 10 122333444333 58999999999999764
No 186
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=96.63 E-value=0.0028 Score=41.38 Aligned_cols=48 Identities=25% Similarity=0.260 Sum_probs=31.0
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|+++||+|+.+..+.. .++...+.+..+ .+++++||.+|.|+.+.
T Consensus 107 ~~iivv~nK~D~~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~l 154 (163)
T cd01860 107 IIIALVGNKADLESKRQVS----TEEAQEYADENG-----LLFFETSAKTGENVNEL 154 (163)
T ss_pred CeEEEEEECccccccCcCC----HHHHHHHHHHcC-----CEEEEEECCCCCCHHHH
Confidence 4689999999987311111 123334444333 58999999999998543
No 187
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=96.63 E-value=0.002 Score=42.82 Aligned_cols=48 Identities=23% Similarity=0.223 Sum_probs=31.6
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|++.||+|+.+... ...++...+.+..+ .+++++||.+|.|+.+.
T Consensus 110 ~pvivv~nK~Dl~~~~~----~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~i~~~ 157 (168)
T cd01866 110 MTIMLIGNKCDLESRRE----VSYEEGEAFAKEHG-----LIFMETSAKTASNVEEA 157 (168)
T ss_pred CcEEEEEECcccccccC----CCHHHHHHHHHHcC-----CEEEEEeCCCCCCHHHH
Confidence 57899999999874111 01123334444333 58999999999999653
No 188
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=96.63 E-value=0.0011 Score=45.06 Aligned_cols=53 Identities=26% Similarity=0.273 Sum_probs=33.1
Q ss_pred CCeEEEEEEcCCCCCCCH-------HHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQ-------DRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~-------~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++|++.||+|+.+.+. .++.. .++.+.+.+..+. .+++.+||++|.|+.+.
T Consensus 105 ~~piilvgnK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~e~Sa~~~~~v~~~ 164 (187)
T cd04129 105 NVPVILVGLKKDLRQDAVAKEEYRTQRFVP-IQQGKRVAKEIGA----KKYMECSALTGEGVDDV 164 (187)
T ss_pred CCCEEEEeeChhhhhCcccccccccCCcCC-HHHHHHHHHHhCC----cEEEEccCCCCCCHHHH
Confidence 468999999999864111 11111 1223334444443 58999999999999764
No 189
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=96.62 E-value=0.0018 Score=42.19 Aligned_cols=49 Identities=22% Similarity=0.180 Sum_probs=31.5
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++++++||+|+.+..+... +..+.+.+..+ .+++++||.+|.|+.+.
T Consensus 105 ~~pivvv~nK~D~~~~~~~~~----~~~~~~~~~~~-----~~~~e~Sa~~~~~i~~l 153 (164)
T smart00175 105 NVVIMLVGNKSDLEDQRQVSR----EEAEAFAEEHG-----LPFFETSAKTNTNVEEA 153 (164)
T ss_pred CCeEEEEEEchhcccccCCCH----HHHHHHHHHcC-----CeEEEEeCCCCCCHHHH
Confidence 458999999999874111111 22233344333 57999999999998653
No 190
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=96.61 E-value=0.003 Score=43.41 Aligned_cols=51 Identities=18% Similarity=0.173 Sum_probs=30.9
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++|+++||+|+.+. +..... +....... ..+ ..+++++||.+|.|+.+.
T Consensus 104 ~~piilv~NK~Dl~~~-~~~v~~--~~~~~~~~-~~~---~~~~~~~Sa~~g~gv~~l 154 (198)
T cd04147 104 FVPIVVVGNKADSLEE-ERQVPA--KDALSTVE-LDW---NCGFVETSAKDNENVLEV 154 (198)
T ss_pred CCcEEEEEEccccccc-cccccH--HHHHHHHH-hhc---CCcEEEecCCCCCCHHHH
Confidence 3579999999998751 111111 11111111 112 268999999999999765
No 191
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=96.61 E-value=0.0015 Score=42.70 Aligned_cols=48 Identities=25% Similarity=0.299 Sum_probs=31.6
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.+++++.||+|+.+..+. ..++...+.+..+ .+++++||.+|.|+.++
T Consensus 106 ~~iivv~nK~D~~~~~~~----~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~ 153 (161)
T cd04113 106 IVVILVGNKSDLADQREV----TFLEASRFAQENG-----LLFLETSALTGENVEEA 153 (161)
T ss_pred CeEEEEEEchhcchhccC----CHHHHHHHHHHcC-----CEEEEEECCCCCCHHHH
Confidence 469999999998741110 1223333444333 58999999999998654
No 192
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.58 E-value=0.00096 Score=47.35 Aligned_cols=47 Identities=21% Similarity=0.229 Sum_probs=32.1
Q ss_pred EEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 17 LGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 17 ~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
=+++|||.|++++-...++...+. .+++. .+.||+.+|+++|+|+.+
T Consensus 145 DllVInK~DLa~~v~~dlevm~~d----a~~~n---p~~~ii~~n~ktg~G~~~ 191 (202)
T COG0378 145 DLLVINKTDLAPYVGADLEVMARD----AKEVN---PEAPIIFTNLKTGEGLDE 191 (202)
T ss_pred eEEEEehHHhHHHhCccHHHHHHH----HHHhC---CCCCEEEEeCCCCcCHHH
Confidence 478999999987533333433333 33333 358999999999999854
No 193
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=96.52 E-value=0.0068 Score=44.25 Aligned_cols=49 Identities=16% Similarity=0.255 Sum_probs=31.6
Q ss_pred cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
++-+++|+++||+|+++ ++..+ ....+++..+ .+++++||.+|.++.+.
T Consensus 46 l~~kp~IiVlNK~DL~~--~~~~~----~~~~~~~~~~-----~~vi~iSa~~~~gi~~L 94 (276)
T TIGR03596 46 RGNKPRLIVLNKADLAD--PAVTK----QWLKYFEEKG-----IKALAINAKKGKGVKKI 94 (276)
T ss_pred HCCCCEEEEEEccccCC--HHHHH----HHHHHHHHcC-----CeEEEEECCCcccHHHH
Confidence 34578999999999975 22222 1222233222 47899999999887543
No 194
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=96.51 E-value=0.0022 Score=45.59 Aligned_cols=57 Identities=26% Similarity=0.238 Sum_probs=33.6
Q ss_pred CeEEEEEEcCCCCCC-CH--------------HHHHHHHHHHHHHHHHhC-C--------CCCCceEEEeeeccCCCCCC
Q psy15201 15 NQLGVVINKLDTVSW-SQ--------------DRFQEIVTKLGAFLKQAG-F--------RDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 15 k~~Iv~INK~D~v~~-~~--------------~~~~~i~~~l~~~l~~~~-~--------~~~~~~iipiSA~~G~ni~~ 70 (97)
.++|++.||+|+.+. .. ....-..++.+.+.+..+ + +....+++++||++|.|+.+
T Consensus 101 ~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~e 180 (220)
T cd04126 101 CLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDE 180 (220)
T ss_pred CcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHH
Confidence 468999999998741 00 011111233444444432 1 01236899999999999976
Q ss_pred C
Q psy15201 71 P 71 (97)
Q Consensus 71 ~ 71 (97)
.
T Consensus 181 l 181 (220)
T cd04126 181 L 181 (220)
T ss_pred H
Confidence 4
No 195
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=96.51 E-value=0.0012 Score=53.28 Aligned_cols=50 Identities=16% Similarity=0.239 Sum_probs=32.0
Q ss_pred cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCC
Q psy15201 12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72 (97)
Q Consensus 12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~ 72 (97)
.| .++|+++||+|+.+. .... ...+.+-+..+ .+++|+||.+|.|+++.-
T Consensus 98 ~~-~PiIIVlNK~Dl~~~--~~i~---~d~~~L~~~lg-----~pvv~tSA~tg~Gi~eL~ 147 (591)
T TIGR00437 98 LG-IPMILALNLVDEAEK--KGIR---IDEEKLEERLG-----VPVVPTSATEGRGIERLK 147 (591)
T ss_pred cC-CCEEEEEehhHHHHh--CCCh---hhHHHHHHHcC-----CCEEEEECCCCCCHHHHH
Confidence 34 478999999998631 1111 12223333333 589999999999997653
No 196
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=96.51 E-value=0.002 Score=53.54 Aligned_cols=51 Identities=18% Similarity=0.263 Sum_probs=32.5
Q ss_pred eccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 10 AVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 10 ~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
+.+|+ ++|+++||+|+.+. ..+. ..++.+-+..+ .|++|+||.+|+|+++.
T Consensus 109 ~e~gi-PvIvVlNK~Dl~~~--~~i~---id~~~L~~~LG-----~pVvpiSA~~g~GIdeL 159 (772)
T PRK09554 109 LELGI-PCIVALNMLDIAEK--QNIR---IDIDALSARLG-----CPVIPLVSTRGRGIEAL 159 (772)
T ss_pred HHcCC-CEEEEEEchhhhhc--cCcH---HHHHHHHHHhC-----CCEEEEEeecCCCHHHH
Confidence 34564 68999999998641 1111 12222333334 58999999999997543
No 197
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=96.49 E-value=0.0083 Score=37.12 Aligned_cols=50 Identities=24% Similarity=0.161 Sum_probs=30.6
Q ss_pred CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 13 GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 13 Gvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
.-.++++++||+|+.+........ .... .... ...+++++|+.+|.|+.+
T Consensus 101 ~~~~~ivv~nk~D~~~~~~~~~~~---~~~~-~~~~----~~~~~~~~s~~~~~~i~~ 150 (157)
T cd00882 101 ENIPIILVGNKIDLPEERVVSEEE---LAEQ-LAKE----LGVPYFETSAKTGENVEE 150 (157)
T ss_pred CCCcEEEEEeccccccccchHHHH---HHHH-HHhh----cCCcEEEEecCCCCChHH
Confidence 346799999999987522211111 0111 1111 247999999999998754
No 198
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=96.48 E-value=0.0042 Score=45.76 Aligned_cols=49 Identities=20% Similarity=0.183 Sum_probs=31.0
Q ss_pred cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCC
Q psy15201 12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72 (97)
Q Consensus 12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~ 72 (97)
.++ ++|+++||+|+++. .+. .. ........+ .+++++||.+|.|+.+..
T Consensus 108 ~~i-p~iIVlNK~DL~~~-~~~----~~-~~~~~~~~g-----~~v~~vSA~~g~gi~~L~ 156 (287)
T cd01854 108 AGI-EPVIVLTKADLLDD-EEE----EL-ELVEALALG-----YPVLAVSAKTGEGLDELR 156 (287)
T ss_pred cCC-CEEEEEEHHHCCCh-HHH----HH-HHHHHHhCC-----CeEEEEECCCCccHHHHH
Confidence 354 57899999999852 111 11 112222223 589999999999986643
No 199
>KOG0462|consensus
Probab=96.45 E-value=0.0043 Score=50.09 Aligned_cols=53 Identities=23% Similarity=0.259 Sum_probs=38.6
Q ss_pred eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
|...|. .+|.++||+|+.. ++.+++..++..++ .+ ...++|.+||++|.|+.+
T Consensus 173 Afe~~L-~iIpVlNKIDlp~---adpe~V~~q~~~lF---~~--~~~~~i~vSAK~G~~v~~ 225 (650)
T KOG0462|consen 173 AFEAGL-AIIPVLNKIDLPS---ADPERVENQLFELF---DI--PPAEVIYVSAKTGLNVEE 225 (650)
T ss_pred HHHcCC-eEEEeeeccCCCC---CCHHHHHHHHHHHh---cC--CccceEEEEeccCccHHH
Confidence 444666 4799999999975 45556666666665 33 246899999999999855
No 200
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=96.44 E-value=0.0033 Score=46.01 Aligned_cols=49 Identities=16% Similarity=0.076 Sum_probs=31.3
Q ss_pred eccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCC
Q psy15201 10 AVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGE 66 (97)
Q Consensus 10 ~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ 66 (97)
+..|+ +.|+++||+|+.+.+ ++++.++++..++... ...++||||..+.
T Consensus 113 ~~~~~-p~ivviNK~D~~~a~---~~~~~~~l~~~l~~~~----~~~~~Pisa~~~f 161 (270)
T cd01886 113 DRYNV-PRIAFVNKMDRTGAD---FFRVVEQIREKLGANP----VPLQLPIGEEDDF 161 (270)
T ss_pred HHcCC-CEEEEEECCCCCCCC---HHHHHHHHHHHhCCCc----eEEEeccccCCCc
Confidence 34565 568899999997532 3445566666553222 2578999997653
No 201
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=96.44 E-value=0.0024 Score=45.02 Aligned_cols=48 Identities=17% Similarity=0.041 Sum_probs=30.4
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|++.||+|+.+. .... .++...+.+..+ .+++++||.+|.|+.+.
T Consensus 107 ~piilV~NK~Dl~~~--~~v~--~~~~~~~a~~~~-----~~~~e~SA~~~~gv~~l 154 (221)
T cd04148 107 RPIILVGNKSDLARS--REVS--VQEGRACAVVFD-----CKFIETSAGLQHNVDEL 154 (221)
T ss_pred CCEEEEEEChhcccc--ceec--HHHHHHHHHHcC-----CeEEEecCCCCCCHHHH
Confidence 579999999998741 1111 111222222222 58999999999999654
No 202
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.43 E-value=0.0072 Score=44.66 Aligned_cols=55 Identities=15% Similarity=-0.008 Sum_probs=30.6
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhC--CCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAG--FRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~--~~~~~~~iipiSA~~G~ni~~~ 71 (97)
++.++++||+|+.+. + ....+...+..-+.... ...-..+++++||.+|.|+.+.
T Consensus 173 ~~~ivv~NK~Dl~~~-~-~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L 229 (300)
T TIGR00750 173 IADIYVVNKADGEGA-T-NVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDEL 229 (300)
T ss_pred hccEEEEEcccccch-h-HHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHH
Confidence 346899999999852 2 12222222211111110 0001247999999999999765
No 203
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=96.42 E-value=0.0039 Score=42.65 Aligned_cols=53 Identities=25% Similarity=0.185 Sum_probs=33.3
Q ss_pred CeEEEEEEcCCCCCCCHHH------HHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDR------FQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~------~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|++.||+|+.+..... .....++.+.+.+..+. .+++.+||.+|.|+.+.
T Consensus 106 ~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~----~~~~E~SAk~~~nV~~~ 164 (176)
T cd04133 106 VPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGA----AAYIECSSKTQQNVKAV 164 (176)
T ss_pred CCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCC----CEEEECCCCcccCHHHH
Confidence 5799999999996421100 00113344445544432 37999999999998654
No 204
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=96.42 E-value=0.0045 Score=42.51 Aligned_cols=53 Identities=23% Similarity=0.194 Sum_probs=33.6
Q ss_pred CeEEEEEEcCCCCCCCHHHH--------HHHHHHHHHHHHHhCCCCCCceEEEeeeccCCC-CCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRF--------QEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGEN-LTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~--------~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~n-i~~~ 71 (97)
.++|++.||+|+.+...... .--.++.+.+.+..+. .+++.+||++|.| +.+.
T Consensus 110 ~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~----~~~~E~SAk~~~n~v~~~ 171 (182)
T cd04172 110 TKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGA----ATYIECSALQSENSVRDI 171 (182)
T ss_pred CCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCC----CEEEECCcCCCCCCHHHH
Confidence 57899999999864111000 0112345555555553 4899999999998 8653
No 205
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=96.41 E-value=0.0024 Score=44.17 Aligned_cols=48 Identities=19% Similarity=0.191 Sum_probs=33.0
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|++-||+|+... ... ..++.+.+.+..+ .+++.+||.+|.|+.++
T Consensus 111 ~piilVGNK~DL~~~--~~v--~~~~~~~~a~~~~-----~~~~e~SAk~g~~V~~~ 158 (189)
T cd04121 111 VPKILVGNRLHLAFK--RQV--ATEQAQAYAERNG-----MTFFEVSPLCNFNITES 158 (189)
T ss_pred CCEEEEEECccchhc--cCC--CHHHHHHHHHHcC-----CEEEEecCCCCCCHHHH
Confidence 478999999998641 111 1234455555443 58999999999999765
No 206
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=96.38 E-value=0.0014 Score=43.75 Aligned_cols=51 Identities=10% Similarity=-0.018 Sum_probs=31.5
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.+++++.||+|+...++.... .++.+.+.++.+ ..+++++||++|.|+.+.
T Consensus 100 ~piilvgnK~Dl~~~~~~~v~--~~~~~~~~~~~~----~~~~~e~SAk~~~~i~~~ 150 (158)
T cd04103 100 IPLILVGTQDAISESNPRVID--DARARQLCADMK----RCSYYETCATYGLNVERV 150 (158)
T ss_pred CCEEEEeeHHHhhhcCCcccC--HHHHHHHHHHhC----CCcEEEEecCCCCCHHHH
Confidence 378999999997421111111 122333443322 368999999999998764
No 207
>PTZ00369 Ras-like protein; Provisional
Probab=96.37 E-value=0.0038 Score=42.50 Aligned_cols=48 Identities=21% Similarity=0.128 Sum_probs=30.3
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|++.||+|+.+. .... .++...+.+..+ .+++++||.+|.|+.+.
T Consensus 111 ~piiiv~nK~Dl~~~--~~i~--~~~~~~~~~~~~-----~~~~e~Sak~~~gi~~~ 158 (189)
T PTZ00369 111 VPMILVGNKCDLDSE--RQVS--TGEGQELAKSFG-----IPFLETSAKQRVNVDEA 158 (189)
T ss_pred CCEEEEEECcccccc--cccC--HHHHHHHHHHhC-----CEEEEeeCCCCCCHHHH
Confidence 368999999998641 1111 112222333222 58999999999999653
No 208
>PLN03118 Rab family protein; Provisional
Probab=96.35 E-value=0.0035 Score=43.49 Aligned_cols=47 Identities=28% Similarity=0.222 Sum_probs=30.0
Q ss_pred eEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 16 QLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 16 ~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
++|++.||+|+....+ .. .++...+.+..+ .+++++||.+|.|+.+.
T Consensus 122 ~~ilv~NK~Dl~~~~~--i~--~~~~~~~~~~~~-----~~~~e~SAk~~~~v~~l 168 (211)
T PLN03118 122 VKMLVGNKVDRESERD--VS--REEGMALAKEHG-----CLFLECSAKTRENVEQC 168 (211)
T ss_pred CEEEEEECccccccCc--cC--HHHHHHHHHHcC-----CEEEEEeCCCCCCHHHH
Confidence 5788999999874211 10 122223333322 58999999999998765
No 209
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=96.35 E-value=0.0036 Score=49.95 Aligned_cols=47 Identities=19% Similarity=0.265 Sum_probs=35.7
Q ss_pred eEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 16 QLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 16 ~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
.+|-++||+|+... ..++++++++..+ |. +....+-+||++|.|+.+
T Consensus 130 eIiPViNKIDLP~A---dpervk~eIe~~i---Gi--d~~dav~~SAKtG~gI~~ 176 (603)
T COG0481 130 EIIPVLNKIDLPAA---DPERVKQEIEDII---GI--DASDAVLVSAKTGIGIED 176 (603)
T ss_pred EEEEeeecccCCCC---CHHHHHHHHHHHh---CC--CcchheeEecccCCCHHH
Confidence 47899999999753 3455667777776 66 346778899999999854
No 210
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=96.33 E-value=0.0022 Score=42.84 Aligned_cols=47 Identities=21% Similarity=0.261 Sum_probs=26.7
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHH--HHHHHHhCCCCCCceEEEeeeccC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKL--GAFLKQAGFRDSDIEYVPCSGLTG 65 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l--~~~l~~~~~~~~~~~iipiSA~~G 65 (97)
-.++++++||.|+.+.. ...++.+.+ ..+.+..+ ...+++++||.+|
T Consensus 100 ~~piliv~NK~Dl~~~~--~~~~i~~~~~l~~~~~~~~---~~~~~~~~Sa~~g 148 (167)
T cd04161 100 GKPILVLANKQDKKNAL--LGADVIEYLSLEKLVNENK---SLCHIEPCSAIEG 148 (167)
T ss_pred CCcEEEEEeCCCCcCCC--CHHHHHHhcCcccccCCCC---ceEEEEEeEceeC
Confidence 35799999999987521 111222211 11111111 1368999999998
No 211
>COG1160 Predicted GTPases [General function prediction only]
Probab=96.31 E-value=0.0052 Score=48.24 Aligned_cols=45 Identities=24% Similarity=0.310 Sum_probs=31.1
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-+++|+|+||+|-.+ .+ +...+ +..+|+ -.++||||.+|.|+...
T Consensus 112 ~kpviLvvNK~D~~~-~e-------~~~~e-fyslG~----g~~~~ISA~Hg~Gi~dL 156 (444)
T COG1160 112 KKPVILVVNKIDNLK-AE-------ELAYE-FYSLGF----GEPVPISAEHGRGIGDL 156 (444)
T ss_pred CCCEEEEEEcccCch-hh-------hhHHH-HHhcCC----CCceEeehhhccCHHHH
Confidence 378999999999653 11 11222 334566 57899999999998654
No 212
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=96.31 E-value=0.0036 Score=43.87 Aligned_cols=49 Identities=20% Similarity=0.156 Sum_probs=31.3
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|++.||+|+.+. .... .++.+.+.+... ...++.+||++|.|+.+.
T Consensus 106 ~piilVgNK~DL~~~--~~v~--~~~~~~~a~~~~----~~~~~etSAktg~gV~e~ 154 (202)
T cd04120 106 AELLLVGNKLDCETD--REIS--RQQGEKFAQQIT----GMRFCEASAKDNFNVDEI 154 (202)
T ss_pred CcEEEEEECcccccc--cccC--HHHHHHHHHhcC----CCEEEEecCCCCCCHHHH
Confidence 468999999998641 1111 122233333321 258999999999999765
No 213
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=96.28 E-value=0.0029 Score=43.93 Aligned_cols=52 Identities=21% Similarity=-0.007 Sum_probs=33.1
Q ss_pred CeEEEEEEcCCCCCCCH-H--------------HHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQ-D--------------RFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~-~--------------~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|++.||+|+.+... + ...-..++.+.+.+..+ .+++.+||++|.|+.+.
T Consensus 121 ~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~-----~~~~E~SAkt~~~V~e~ 187 (195)
T cd01873 121 VPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELG-----IPYYETSVVTQFGVKDV 187 (195)
T ss_pred CCEEEEEEchhccccccchhhhcccccccccccCCccCHHHHHHHHHHhC-----CEEEEcCCCCCCCHHHH
Confidence 47899999999863100 0 00111234455555544 58999999999998653
No 214
>KOG1144|consensus
Probab=96.24 E-value=0.0051 Score=51.36 Aligned_cols=20 Identities=25% Similarity=0.527 Sum_probs=16.6
Q ss_pred CCCceEEEeeeccCCCCCCC
Q psy15201 52 DSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 52 ~~~~~iipiSA~~G~ni~~~ 71 (97)
.+.+.++|.||..|+|+..+
T Consensus 659 ~~~vsiVPTSA~sGeGipdL 678 (1064)
T KOG1144|consen 659 GETVSIVPTSAISGEGIPDL 678 (1064)
T ss_pred cceEEeeecccccCCCcHHH
Confidence 34589999999999999654
No 215
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=96.22 E-value=0.0041 Score=42.08 Aligned_cols=48 Identities=19% Similarity=0.128 Sum_probs=30.5
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|++.||.|+.+... .. .+....+.+..+ .+++++||.+|.|+.+.
T Consensus 106 ~~~ivv~nK~Dl~~~~~--v~--~~~~~~~~~~~~-----~~~~evSa~~~~~i~~~ 153 (188)
T cd04125 106 VIKVIVANKSDLVNNKV--VD--SNIAKSFCDSLN-----IPFFETSAKQSINVEEA 153 (188)
T ss_pred CeEEEEEECCCCccccc--CC--HHHHHHHHHHcC-----CeEEEEeCCCCCCHHHH
Confidence 57899999999874211 00 111222333323 48999999999999654
No 216
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=96.13 E-value=0.0068 Score=41.13 Aligned_cols=51 Identities=22% Similarity=0.293 Sum_probs=33.1
Q ss_pred CCCeEEEEEEcCCCCCC-CHHHHHHHHHHHHHHHHHhCCC-CCCceEEEeeeccCCCCCC
Q psy15201 13 GVNQLGVVINKLDTVSW-SQDRFQEIVTKLGAFLKQAGFR-DSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 13 Gvk~~Iv~INK~D~v~~-~~~~~~~i~~~l~~~l~~~~~~-~~~~~iipiSA~~G~ni~~ 70 (97)
.-.++++..||.|+.+. +. ++ +...+....+. .....++++||.+|+|+.+
T Consensus 114 ~~~piLIl~NK~D~~~~~~~---~~----i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e 166 (175)
T PF00025_consen 114 KDIPILILANKQDLPDAMSE---EE----IKEYLGLEKLKNKRPWSVFSCSAKTGEGVDE 166 (175)
T ss_dssp TTSEEEEEEESTTSTTSSTH---HH----HHHHTTGGGTTSSSCEEEEEEBTTTTBTHHH
T ss_pred ccceEEEEeccccccCcchh---hH----HHhhhhhhhcccCCceEEEeeeccCCcCHHH
Confidence 34689999999998752 22 22 22222211222 3568999999999999864
No 217
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=96.13 E-value=0.0048 Score=47.09 Aligned_cols=44 Identities=23% Similarity=0.246 Sum_probs=29.5
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
+++|+++||+|+.+. +.. ..+ +...++ .+++++||.+|.|+.+.
T Consensus 108 ~piilVvNK~D~~~~-~~~-------~~~-~~~lg~----~~~~~vSa~~g~gv~~l 151 (429)
T TIGR03594 108 KPVILVANKIDGKKE-DAV-------AAE-FYSLGF----GEPIPISAEHGRGIGDL 151 (429)
T ss_pred CCEEEEEECccCCcc-ccc-------HHH-HHhcCC----CCeEEEeCCcCCChHHH
Confidence 579999999998752 111 111 223344 47899999999998543
No 218
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=96.09 E-value=0.0059 Score=42.69 Aligned_cols=46 Identities=17% Similarity=0.297 Sum_probs=29.7
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|++.||+|+.+. .... +.+ .+.+.. ..+++++||++|.|+.+.
T Consensus 100 ~piilvgNK~Dl~~~-~v~~----~~~-~~~~~~-----~~~~~e~SAk~~~~v~~~ 145 (200)
T smart00176 100 IPIVLCGNKVDVKDR-KVKA----KSI-TFHRKK-----NLQYYDISAKSNYNFEKP 145 (200)
T ss_pred CCEEEEEECcccccc-cCCH----HHH-HHHHHc-----CCEEEEEeCCCCCCHHHH
Confidence 478999999998531 1111 111 222222 368999999999999665
No 219
>PLN03108 Rab family protein; Provisional
Probab=96.07 E-value=0.0062 Score=42.41 Aligned_cols=49 Identities=18% Similarity=0.209 Sum_probs=32.3
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.+++++.||+|+.+... . ..++.+.+.+..+ .+++++||.+|.|+.+.
T Consensus 111 ~~piiiv~nK~Dl~~~~~--~--~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~e~ 159 (210)
T PLN03108 111 NMTIMLIGNKCDLAHRRA--V--STEEGEQFAKEHG-----LIFMEASAKTAQNVEEA 159 (210)
T ss_pred CCcEEEEEECccCccccC--C--CHHHHHHHHHHcC-----CEEEEEeCCCCCCHHHH
Confidence 357899999999864111 0 1223344444433 58999999999999764
No 220
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=96.06 E-value=0.018 Score=39.81 Aligned_cols=48 Identities=23% Similarity=0.183 Sum_probs=30.7
Q ss_pred CeEEEEEEcCCCCCCCH-----------HHHHHHHHHHHHHHHHhCCCCCCceEEEeeecc
Q psy15201 15 NQLGVVINKLDTVSWSQ-----------DRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLT 64 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~-----------~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~ 64 (97)
+++++|+||+|+....+ ...+++++.+...++..+. ...+++++|+..
T Consensus 108 ~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~--~~p~v~~vS~~~ 166 (197)
T cd04104 108 KKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGV--SEPPVFLVSNFD 166 (197)
T ss_pred CCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCC--CCCCEEEEeCCC
Confidence 47899999999853222 2244555555555554333 346899999984
No 221
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=96.03 E-value=0.0079 Score=42.03 Aligned_cols=48 Identities=25% Similarity=0.267 Sum_probs=31.0
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|++.||.|+.+..+ . ..++.+.+.+..+ .+++++||.+|.|+.+.
T Consensus 110 ~~iilvgNK~Dl~~~~~-v---~~~~~~~~~~~~~-----~~~~e~Sak~g~~v~e~ 157 (211)
T cd04111 110 PVFILVGHKCDLESQRQ-V---TREEAEKLAKDLG-----MKYIETSARTGDNVEEA 157 (211)
T ss_pred CeEEEEEEccccccccc-c---CHHHHHHHHHHhC-----CEEEEEeCCCCCCHHHH
Confidence 45788999999875111 1 1122333444333 68999999999998665
No 222
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=96.03 E-value=0.0067 Score=46.03 Aligned_cols=43 Identities=30% Similarity=0.315 Sum_probs=28.6
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-+++|+++||+|+.+ ..... .... ++ .+++++||++|.|+.+.
T Consensus 301 ~~piIlV~NK~Dl~~--~~~v~-------~~~~--~~----~~~i~iSAktg~GI~eL 343 (351)
T TIGR03156 301 DIPQLLVYNKIDLLD--EPRIE-------RLEE--GY----PEAVFVSAKTGEGLDLL 343 (351)
T ss_pred CCCEEEEEEeecCCC--hHhHH-------HHHh--CC----CCEEEEEccCCCCHHHH
Confidence 357999999999975 21111 1111 11 36899999999998653
No 223
>PRK03003 GTP-binding protein Der; Reviewed
Probab=96.03 E-value=0.008 Score=47.05 Aligned_cols=44 Identities=23% Similarity=0.276 Sum_probs=28.3
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
+++|+|+||+|+... +. +...+. ..++. ..+++||.+|.|+.+.
T Consensus 147 ~piilV~NK~Dl~~~-~~-------~~~~~~-~~g~~----~~~~iSA~~g~gi~eL 190 (472)
T PRK03003 147 KPVILAANKVDDERG-EA-------DAAALW-SLGLG----EPHPVSALHGRGVGDL 190 (472)
T ss_pred CCEEEEEECccCCcc-ch-------hhHHHH-hcCCC----CeEEEEcCCCCCcHHH
Confidence 579999999998641 11 111121 23442 2369999999998654
No 224
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=96.02 E-value=0.004 Score=41.02 Aligned_cols=48 Identities=13% Similarity=0.114 Sum_probs=29.4
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCC-CCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGE-NLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~-ni~~~ 71 (97)
.++|++.||+|+.+. .... .++.+.+.+..+ .+++++||.+|. |+.+.
T Consensus 107 ~piilv~nK~Dl~~~--~~v~--~~~~~~~~~~~~-----~~~~e~Sa~~~~~~v~~~ 155 (165)
T cd04146 107 IPVILVGNKADLLHY--RQVS--TEEGEKLASELG-----CLFFEVSAAEDYDGVHSV 155 (165)
T ss_pred CCEEEEEECCchHHh--CccC--HHHHHHHHHHcC-----CEEEEeCCCCCchhHHHH
Confidence 568999999998531 1111 122233333333 589999999994 77543
No 225
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=96.01 E-value=0.0089 Score=42.67 Aligned_cols=42 Identities=24% Similarity=0.192 Sum_probs=28.8
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~ 72 (97)
.+++++.||+|+++ .+.. ..+.+ ..+++++||.+|.|+.+..
T Consensus 177 ~p~iiV~NK~Dl~~--~~~~-------~~~~~-------~~~~~~~SA~~g~gi~~l~ 218 (233)
T cd01896 177 IPCLYVYNKIDLIS--IEEL-------DLLAR-------QPNSVVISAEKGLNLDELK 218 (233)
T ss_pred eeEEEEEECccCCC--HHHH-------HHHhc-------CCCEEEEcCCCCCCHHHHH
Confidence 37899999999985 2211 12211 1358999999999997653
No 226
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=95.97 E-value=0.0076 Score=39.85 Aligned_cols=48 Identities=19% Similarity=0.174 Sum_probs=30.6
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.+++++.||.|+.+. .... .++...+.+..+ .+++++||.+|.|+.+.
T Consensus 106 ~~iilvgnK~Dl~~~--~~v~--~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~~ 153 (161)
T cd04117 106 VQKILIGNKADEEQK--RQVG--DEQGNKLAKEYG-----MDFFETSACTNSNIKES 153 (161)
T ss_pred CeEEEEEECcccccc--cCCC--HHHHHHHHHHcC-----CEEEEEeCCCCCCHHHH
Confidence 478999999998641 1111 122333333333 58999999999998653
No 227
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=95.93 E-value=0.02 Score=42.11 Aligned_cols=48 Identities=17% Similarity=0.290 Sum_probs=31.2
Q ss_pred cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
++-++.|+++||+|+++ ....+ ....+++..+ .+++++||.+|.|+.+
T Consensus 49 ~~~kp~iiVlNK~DL~~--~~~~~----~~~~~~~~~~-----~~vi~vSa~~~~gi~~ 96 (287)
T PRK09563 49 IGNKPRLLILNKSDLAD--PEVTK----KWIEYFEEQG-----IKALAINAKKGQGVKK 96 (287)
T ss_pred hCCCCEEEEEEchhcCC--HHHHH----HHHHHHHHcC-----CeEEEEECCCcccHHH
Confidence 34578999999999974 32222 2223333222 4789999999988754
No 228
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.92 E-value=0.0092 Score=45.01 Aligned_cols=60 Identities=20% Similarity=0.194 Sum_probs=36.1
Q ss_pred eccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 10 AVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 10 ~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.+-+-. |+||||.|+-+ .+.-+.+++..+....+...-++-..|++-+||.+|.|+.+.
T Consensus 186 GimEiaD-i~vINKaD~~~-A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L 245 (323)
T COG1703 186 GIMEIAD-IIVINKADRKG-AEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDEL 245 (323)
T ss_pred hhhhhhh-eeeEeccChhh-HHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHH
Confidence 3344433 78899999764 444455554444433211111122479999999999998654
No 229
>PRK00007 elongation factor G; Reviewed
Probab=95.92 E-value=0.0098 Score=48.75 Aligned_cols=49 Identities=18% Similarity=0.167 Sum_probs=32.7
Q ss_pred eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccC
Q psy15201 9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTG 65 (97)
Q Consensus 9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G 65 (97)
++..|++ .|+++||||+.+.+ +.++.++++..+ ++. ....++|+||..|
T Consensus 123 ~~~~~~p-~iv~vNK~D~~~~~---~~~~~~~i~~~l---~~~-~~~~~ipisa~~~ 171 (693)
T PRK00007 123 ADKYKVP-RIAFVNKMDRTGAD---FYRVVEQIKDRL---GAN-PVPIQLPIGAEDD 171 (693)
T ss_pred HHHcCCC-EEEEEECCCCCCCC---HHHHHHHHHHHh---CCC-eeeEEecCccCCc
Confidence 4457775 57999999998632 444555665555 331 1357899999887
No 230
>PLN03110 Rab GTPase; Provisional
Probab=95.86 E-value=0.0068 Score=42.44 Aligned_cols=48 Identities=15% Similarity=0.124 Sum_probs=30.1
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|++.||+|+.+..+ .-. ++.+.+.+.. ..+++++||.+|.|+.+.
T Consensus 118 ~piiiv~nK~Dl~~~~~-~~~---~~~~~l~~~~-----~~~~~e~SA~~g~~v~~l 165 (216)
T PLN03110 118 IVIMMAGNKSDLNHLRS-VAE---EDGQALAEKE-----GLSFLETSALEATNVEKA 165 (216)
T ss_pred CeEEEEEEChhcccccC-CCH---HHHHHHHHHc-----CCEEEEEeCCCCCCHHHH
Confidence 47899999999864111 001 1122222222 268999999999998654
No 231
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=95.85 E-value=0.014 Score=41.87 Aligned_cols=53 Identities=21% Similarity=0.147 Sum_probs=32.6
Q ss_pred CeEEEEEEcCCCCCCCHHH--------HHHHHHHHHHHHHHhCCCCCCceEEEeeeccCC-CCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDR--------FQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGE-NLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~--------~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~-ni~~~ 71 (97)
.++|+|.||+|+.+..... ...-.++.+.+.+..++ .+++.+||++|. |+.+.
T Consensus 118 ~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~----~~~~EtSAktg~~~V~e~ 179 (232)
T cd04174 118 TRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGA----EVYLECSAFTSEKSIHSI 179 (232)
T ss_pred CCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCC----CEEEEccCCcCCcCHHHH
Confidence 4789999999985311000 00112345566665553 378999999997 67543
No 232
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=95.83 E-value=0.013 Score=39.83 Aligned_cols=53 Identities=23% Similarity=0.150 Sum_probs=32.4
Q ss_pred CCeEEEEEEcCCCCCCCHHH--H-----H-HHHHHHHHHHHHhCCCCCCceEEEeeeccCCC-CCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDR--F-----Q-EIVTKLGAFLKQAGFRDSDIEYVPCSGLTGEN-LTT 70 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~--~-----~-~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~n-i~~ 70 (97)
-.++|++.||+|+.+..... + . -..++.+.+.+..+. .+++.+||++|.| +.+
T Consensus 105 ~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~----~~~~E~SA~~~~~~v~~ 166 (178)
T cd04131 105 NTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGA----EIYLECSAFTSEKSVRD 166 (178)
T ss_pred CCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCC----CEEEECccCcCCcCHHH
Confidence 35789999999986411110 0 0 012344455555443 4899999999995 755
No 233
>PRK09602 translation-associated GTPase; Reviewed
Probab=95.82 E-value=0.0086 Score=46.27 Aligned_cols=44 Identities=16% Similarity=0.231 Sum_probs=30.0
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
-+|+|+++||+|... ....+. .+.+. ++ .+++|+||..+.|+.+
T Consensus 217 ~KPvI~VlNK~D~~~-~~~~l~-------~i~~~-~~----~~vvpISA~~e~~l~~ 260 (396)
T PRK09602 217 SKPMVIAANKADLPP-AEENIE-------RLKEE-KY----YIVVPTSAEAELALRR 260 (396)
T ss_pred CCCEEEEEEchhccc-chHHHH-------HHHhc-CC----CcEEEEcchhhhhHHH
Confidence 489999999999763 222222 22221 33 5799999999999866
No 234
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=95.75 E-value=0.013 Score=44.01 Aligned_cols=48 Identities=21% Similarity=0.221 Sum_probs=32.4
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQ 73 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~ 73 (97)
-+++|+++||+|+.+ .++.. +.++ .... ..+++|+||..+.++.+...
T Consensus 214 ~KPvI~VlNK~Dl~~-~~~~~----~~l~---~~~~----~~~iI~iSA~~e~~L~~L~~ 261 (318)
T cd01899 214 SKPMVIAANKADIPD-AENNI----SKLR---LKYP----DEIVVPTSAEAELALRRAAK 261 (318)
T ss_pred CCcEEEEEEHHHccC-hHHHH----HHHH---hhCC----CCeEEEEeCcccccHHHHHH
Confidence 479999999999864 22222 1222 1112 36899999999999987653
No 235
>PRK00093 GTP-binding protein Der; Reviewed
Probab=95.73 E-value=0.011 Score=45.24 Aligned_cols=44 Identities=23% Similarity=0.263 Sum_probs=28.5
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
+++|+++||+|..+ .+. ...++ ...++ ..++++||.+|.|+.+.
T Consensus 110 ~piilv~NK~D~~~-~~~-------~~~~~-~~lg~----~~~~~iSa~~g~gv~~l 153 (435)
T PRK00093 110 KPVILVVNKVDGPD-EEA-------DAYEF-YSLGL----GEPYPISAEHGRGIGDL 153 (435)
T ss_pred CcEEEEEECccCcc-chh-------hHHHH-HhcCC----CCCEEEEeeCCCCHHHH
Confidence 47999999999754 111 11222 22344 35799999999998543
No 236
>KOG0052|consensus
Probab=95.70 E-value=0.0056 Score=47.32 Aligned_cols=45 Identities=31% Similarity=0.615 Sum_probs=37.8
Q ss_pred eeccCCCeEEEEEEcCCCCC--CCHHHHHHHHHHHHHHHHHhCCCCC
Q psy15201 9 SAVSGVNQLGVVINKLDTVS--WSQDRFQEIVTKLGAFLKQAGFRDS 53 (97)
Q Consensus 9 ~~~lGvk~~Iv~INK~D~v~--~~~~~~~~i~~~l~~~l~~~~~~~~ 53 (97)
|.+||++++|+.+||||..+ |++.|++++.+....+.++.++++.
T Consensus 137 a~tlgv~qliv~v~k~D~~~~~~s~~r~~ei~k~~~~~~~~~g~n~~ 183 (391)
T KOG0052|consen 137 AFTLGVKQLIVGVNKMDSTEPPYSEARYEEIKKEVSSYIKKIGYNPA 183 (391)
T ss_pred hccccceeeeEEeecccccCCCccccchhhhheeeeeeeeccccCCh
Confidence 45799999999999999775 8899999998888888877777644
No 237
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=95.68 E-value=0.0077 Score=47.05 Aligned_cols=41 Identities=24% Similarity=0.206 Sum_probs=28.9
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-+++|+++||+|+.+. ... . . . ...+++++||++|.|+.+.
T Consensus 321 ~~piiiV~NK~DL~~~-~~~-~----------~--~---~~~~~i~iSAktg~GI~~L 361 (449)
T PRK05291 321 DKPVIVVLNKADLTGE-IDL-E----------E--E---NGKPVIRISAKTGEGIDEL 361 (449)
T ss_pred CCCcEEEEEhhhcccc-chh-h----------h--c---cCCceEEEEeeCCCCHHHH
Confidence 3579999999999752 110 0 1 1 1357899999999998664
No 238
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=95.64 E-value=0.0074 Score=40.13 Aligned_cols=44 Identities=16% Similarity=-0.049 Sum_probs=26.1
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGEN 67 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~n 67 (97)
.++|++.||+|+.+..+ .. .++.+.+.+.. ..+++++||.++.+
T Consensus 110 ~p~iiv~nK~Dl~~~~~-~~---~~~~~~~~~~~-----~~~~~e~Sa~~~~~ 153 (170)
T cd04115 110 VPRILVGNKCDLREQIQ-VP---TDLAQRFADAH-----SMPLFETSAKDPSE 153 (170)
T ss_pred CCEEEEEECccchhhcC-CC---HHHHHHHHHHc-----CCcEEEEeccCCcC
Confidence 57999999999863110 00 12222333322 26899999999443
No 239
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=95.54 E-value=0.019 Score=47.22 Aligned_cols=44 Identities=23% Similarity=0.355 Sum_probs=28.3
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
+++|+++||+|+.+ ... ....+. ..++ ...+|+||.+|.|+.+.
T Consensus 384 ~pvIlV~NK~D~~~-~~~-------~~~~~~-~lg~----~~~~~iSA~~g~GI~eL 427 (712)
T PRK09518 384 KPVVLAVNKIDDQA-SEY-------DAAEFW-KLGL----GEPYPISAMHGRGVGDL 427 (712)
T ss_pred CCEEEEEECccccc-chh-------hHHHHH-HcCC----CCeEEEECCCCCCchHH
Confidence 57999999999864 111 111222 2344 23579999999999653
No 240
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=95.47 E-value=0.033 Score=39.66 Aligned_cols=51 Identities=25% Similarity=0.370 Sum_probs=31.5
Q ss_pred CeEEEEEEcCCCCCCCHHHHHH--------H-HHHHHHHHHHhCCCCCCceEEEeeeccCCC-CCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQE--------I-VTKLGAFLKQAGFRDSDIEYVPCSGLTGEN-LTT 70 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~--------i-~~~l~~~l~~~~~~~~~~~iipiSA~~G~n-i~~ 70 (97)
.++|++.||+|+.+ +.....+ + .++.+.+.+..+. .+++.+||.+|.| +.+
T Consensus 106 ~piiLVgnK~DL~~-~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~----~~y~E~SAk~~~~~V~~ 166 (222)
T cd04173 106 AKVVLVGCKLDMRT-DLATLRELSKQRLIPVTHEQGTVLAKQVGA----VSYVECSSRSSERSVRD 166 (222)
T ss_pred CCEEEEEECccccc-chhhhhhhhhccCCccCHHHHHHHHHHcCC----CEEEEcCCCcCCcCHHH
Confidence 47999999999865 2211111 1 1233344444443 5899999999986 643
No 241
>PRK12739 elongation factor G; Reviewed
Probab=95.46 E-value=0.023 Score=46.57 Aligned_cols=49 Identities=20% Similarity=0.146 Sum_probs=32.1
Q ss_pred eccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCC
Q psy15201 10 AVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGE 66 (97)
Q Consensus 10 ~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ 66 (97)
+..|+ +.|+++||||+.+.+ +.++.++++..+. +. .....+|+|+..+.
T Consensus 122 ~~~~~-p~iv~iNK~D~~~~~---~~~~~~~i~~~l~---~~-~~~~~iPis~~~~f 170 (691)
T PRK12739 122 DKYGV-PRIVFVNKMDRIGAD---FFRSVEQIKDRLG---AN-AVPIQLPIGAEDDF 170 (691)
T ss_pred HHcCC-CEEEEEECCCCCCCC---HHHHHHHHHHHhC---CC-ceeEEecccccccc
Confidence 34676 468999999998632 4555566665553 32 12467899998776
No 242
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=95.44 E-value=0.0069 Score=40.37 Aligned_cols=44 Identities=23% Similarity=0.033 Sum_probs=25.9
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHH--HHHHHHhCCCCCCceEEEeeecc
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKL--GAFLKQAGFRDSDIEYVPCSGLT 64 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l--~~~l~~~~~~~~~~~iipiSA~~ 64 (97)
-.+++++.||+|+.+. ....++.+.+ ..+.+ ....+++++||++
T Consensus 99 ~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~-----~~~~~~~~~Sa~~ 144 (164)
T cd04162 99 DLPLVVLANKQDLPAA--RSVQEIHKELELEPIAR-----GRRWILQGTSLDD 144 (164)
T ss_pred CCcEEEEEeCcCCcCC--CCHHHHHHHhCChhhcC-----CCceEEEEeeecC
Confidence 4579999999998641 1222222221 22211 1247889999998
No 243
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=95.43 E-value=0.013 Score=41.14 Aligned_cols=46 Identities=20% Similarity=0.313 Sum_probs=29.8
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|++.||+|+.+. +... +++ .+.+.. ..+++++||.+|.|+.+.
T Consensus 118 ~piilvgNK~Dl~~~-~v~~----~~~-~~~~~~-----~~~~~e~SAk~~~~i~~~ 163 (219)
T PLN03071 118 IPIVLCGNKVDVKNR-QVKA----KQV-TFHRKK-----NLQYYEISAKSNYNFEKP 163 (219)
T ss_pred CcEEEEEEchhhhhc-cCCH----HHH-HHHHhc-----CCEEEEcCCCCCCCHHHH
Confidence 479999999998631 1111 112 222222 368899999999998664
No 244
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=95.40 E-value=0.033 Score=37.46 Aligned_cols=51 Identities=18% Similarity=0.224 Sum_probs=37.8
Q ss_pred ccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 11 VSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 11 ~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
..|.++.|-+|+|.|+.+ ..+++ ..+.+|.+.|- .+|+.+|+.+..++.+.
T Consensus 87 ~~~~k~vIgvVTK~DLae--d~dI~----~~~~~L~eaGa----~~IF~~s~~d~~gv~~l 137 (148)
T COG4917 87 DIGVKKVIGVVTKADLAE--DADIS----LVKRWLREAGA----EPIFETSAVDNQGVEEL 137 (148)
T ss_pred cccccceEEEEecccccc--hHhHH----HHHHHHHHcCC----cceEEEeccCcccHHHH
Confidence 478889999999999984 33433 34556666664 68999999998887653
No 245
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=95.37 E-value=0.026 Score=46.20 Aligned_cols=49 Identities=18% Similarity=0.150 Sum_probs=32.2
Q ss_pred eccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCC
Q psy15201 10 AVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGE 66 (97)
Q Consensus 10 ~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ 66 (97)
+..+++ +|+++||+|+.+.+ +.++.++++..+ ++. ....++|+||..|.
T Consensus 124 ~~~~~p-~ivviNK~D~~~~~---~~~~~~~i~~~l---~~~-~~~~~ipis~~~~~ 172 (689)
T TIGR00484 124 NRYEVP-RIAFVNKMDKTGAN---FLRVVNQIKQRL---GAN-AVPIQLPIGAEDNF 172 (689)
T ss_pred HHcCCC-EEEEEECCCCCCCC---HHHHHHHHHHHh---CCC-ceeEEeccccCCCc
Confidence 445664 67899999998532 455556666555 332 12468999998885
No 246
>KOG0078|consensus
Probab=95.34 E-value=0.015 Score=41.53 Aligned_cols=49 Identities=24% Similarity=0.173 Sum_probs=35.2
Q ss_pred CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 13 GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 13 Gvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
+| +.+++-||+|+.+ +...-.++-+.+...+| +.++.+||+.|.||.+.
T Consensus 117 ~v-~~~LvGNK~D~~~----~R~V~~e~ge~lA~e~G-----~~F~EtSAk~~~NI~ea 165 (207)
T KOG0078|consen 117 DV-VKILVGNKCDLEE----KRQVSKERGEALAREYG-----IKFFETSAKTNFNIEEA 165 (207)
T ss_pred CC-cEEEeeccccccc----cccccHHHHHHHHHHhC-----CeEEEccccCCCCHHHH
Confidence 44 5789999999864 11222455566666666 69999999999999764
No 247
>KOG3905|consensus
Probab=95.28 E-value=0.052 Score=41.91 Aligned_cols=54 Identities=24% Similarity=0.306 Sum_probs=43.7
Q ss_pred eccCCCeEEEEEEcCCCC-------CCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCC
Q psy15201 10 AVSGVNQLGVVINKLDTV-------SWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLT 69 (97)
Q Consensus 10 ~~lGvk~~Iv~INK~D~v-------~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~ 69 (97)
.-+|+ +++||++|+|.+ +|..++|+.|...++.|.-..| ...|..|+....|++
T Consensus 219 ~NlGi-~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~G-----aaLiyTSvKE~KNid 279 (473)
T KOG3905|consen 219 HNLGI-PVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYG-----AALIYTSVKETKNID 279 (473)
T ss_pred hcCCC-cEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcC-----ceeEEeecccccchH
Confidence 34888 488999999974 3777899999999998876655 588999999888874
No 248
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.17 E-value=0.046 Score=40.43 Aligned_cols=57 Identities=21% Similarity=0.249 Sum_probs=31.6
Q ss_pred eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCC--CceEEEeeeccCCCCCCC
Q psy15201 9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDS--DIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~--~~~iipiSA~~G~ni~~~ 71 (97)
+-.+-+.. |+||||.|+. -.+....+++..+....-... ..|++.+||.+|.|+.+.
T Consensus 163 aGimEiaD-i~vVNKaD~~-----gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL 221 (266)
T PF03308_consen 163 AGIMEIAD-IFVVNKADRP-----GADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDEL 221 (266)
T ss_dssp TTHHHH-S-EEEEE--SHH-----HHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHH
T ss_pred hhhhhhcc-EEEEeCCChH-----HHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHH
Confidence 33344433 7889999943 333444555555543321111 369999999999998654
No 249
>COG2262 HflX GTPases [General function prediction only]
Probab=94.96 E-value=0.023 Score=44.25 Aligned_cols=44 Identities=27% Similarity=0.179 Sum_probs=29.2
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~ 72 (97)
.++|+|.||+|++.. +.. ...+... . . ..|+|||.+|+|+....
T Consensus 305 ~p~i~v~NKiD~~~~-~~~--------~~~~~~~-~---~-~~v~iSA~~~~gl~~L~ 348 (411)
T COG2262 305 IPIILVLNKIDLLED-EEI--------LAELERG-S---P-NPVFISAKTGEGLDLLR 348 (411)
T ss_pred CCEEEEEecccccCc-hhh--------hhhhhhc-C---C-CeEEEEeccCcCHHHHH
Confidence 689999999998862 221 1112111 1 1 57999999999986653
No 250
>COG0218 Predicted GTPase [General function prediction only]
Probab=94.89 E-value=0.069 Score=38.00 Aligned_cols=55 Identities=20% Similarity=0.175 Sum_probs=33.5
Q ss_pred ccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCC-CCceEEEeeeccCCCCCCC
Q psy15201 11 VSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRD-SDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 11 ~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~-~~~~iipiSA~~G~ni~~~ 71 (97)
..|+ +++|++||+|.++ .....+....+...+ .+.+ ....++..|+..+.|+++.
T Consensus 133 ~~~i-~~~vv~tK~DKi~--~~~~~k~l~~v~~~l---~~~~~~~~~~~~~ss~~k~Gi~~l 188 (200)
T COG0218 133 ELGI-PVIVVLTKADKLK--KSERNKQLNKVAEEL---KKPPPDDQWVVLFSSLKKKGIDEL 188 (200)
T ss_pred HcCC-CeEEEEEccccCC--hhHHHHHHHHHHHHh---cCCCCccceEEEEecccccCHHHH
Confidence 3566 4789999999996 333333334444333 3322 2223888899999887664
No 251
>KOG1143|consensus
Probab=94.76 E-value=0.061 Score=42.28 Aligned_cols=59 Identities=24% Similarity=0.385 Sum_probs=42.3
Q ss_pred eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCC---------------------CCCceEEEeeeccCCC
Q psy15201 9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFR---------------------DSDIEYVPCSGLTGEN 67 (97)
Q Consensus 9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~---------------------~~~~~iipiSA~~G~n 67 (97)
++.|.+ ++.++++|||+++ ..-++.+..++..++.+.|+. +.-+||+.+|+.+|++
T Consensus 299 ~~AL~i-PfFvlvtK~Dl~~--~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGeg 375 (591)
T KOG1143|consen 299 IAALNI-PFFVLVTKMDLVD--RQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEG 375 (591)
T ss_pred HHHhCC-CeEEEEEeecccc--chhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccc
Confidence 345677 5778899999995 455666777777777665542 2336999999999997
Q ss_pred CCC
Q psy15201 68 LTT 70 (97)
Q Consensus 68 i~~ 70 (97)
+..
T Consensus 376 l~l 378 (591)
T KOG1143|consen 376 LRL 378 (591)
T ss_pred hhH
Confidence 643
No 252
>PRK11058 GTPase HflX; Provisional
Probab=94.76 E-value=0.038 Score=43.06 Aligned_cols=45 Identities=20% Similarity=0.073 Sum_probs=28.2
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~ 72 (97)
.++|+++||+|+.+...... .. ...++ ..++++||.+|.|+.+..
T Consensus 310 ~pvIiV~NKiDL~~~~~~~~-------~~--~~~~~----~~~v~ISAktG~GIdeL~ 354 (426)
T PRK11058 310 IPTLLVMNKIDMLDDFEPRI-------DR--DEENK----PIRVWLSAQTGAGIPLLF 354 (426)
T ss_pred CCEEEEEEcccCCCchhHHH-------HH--HhcCC----CceEEEeCCCCCCHHHHH
Confidence 57899999999975211111 11 11122 125889999999997653
No 253
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=94.22 E-value=0.035 Score=45.58 Aligned_cols=49 Identities=27% Similarity=0.425 Sum_probs=32.1
Q ss_pred ccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 11 VSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 11 ~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
.+|++ +|+++|++|..+..--+++ .+++++.+ | +|++|+||.+|.|+++
T Consensus 106 E~g~p-~ilaLNm~D~A~~~Gi~ID--~~~L~~~L---G-----vPVv~tvA~~g~G~~~ 154 (653)
T COG0370 106 ELGIP-MILALNMIDEAKKRGIRID--IEKLSKLL---G-----VPVVPTVAKRGEGLEE 154 (653)
T ss_pred HcCCC-eEEEeccHhhHHhcCCccc--HHHHHHHh---C-----CCEEEEEeecCCCHHH
Confidence 37886 9999999996531000111 23334333 5 6999999999999644
No 254
>COG2229 Predicted GTPase [General function prediction only]
Probab=94.05 E-value=0.075 Score=37.42 Aligned_cols=46 Identities=20% Similarity=0.211 Sum_probs=31.3
Q ss_pred CeEEEEEEcCCCCC-CCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 15 NQLGVVINKLDTVS-WSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 15 k~~Iv~INK~D~v~-~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
-|++|++||.|+-+ |+.+.+. ++++... .+.|+|+++|..+++..+
T Consensus 122 ip~vVa~NK~DL~~a~ppe~i~-------e~l~~~~---~~~~vi~~~a~e~~~~~~ 168 (187)
T COG2229 122 IPVVVAINKQDLFDALPPEKIR-------EALKLEL---LSVPVIEIDATEGEGARD 168 (187)
T ss_pred CCEEEEeeccccCCCCCHHHHH-------HHHHhcc---CCCceeeeecccchhHHH
Confidence 47999999999986 4444333 3333221 247999999998887643
No 255
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=93.97 E-value=0.044 Score=39.51 Aligned_cols=15 Identities=27% Similarity=0.632 Sum_probs=10.3
Q ss_pred eEEEeeeccCCCCCC
Q psy15201 56 EYVPCSGLTGENLTT 70 (97)
Q Consensus 56 ~iipiSA~~G~ni~~ 70 (97)
.++|+|+.+++++.+
T Consensus 213 ~f~pls~~~~~~~~~ 227 (238)
T PF03029_consen 213 RFIPLSSKDGEGMEE 227 (238)
T ss_dssp --EE-BTTTTTTHHH
T ss_pred eEEEEECCChHHHHH
Confidence 899999999998754
No 256
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=93.96 E-value=0.11 Score=41.15 Aligned_cols=53 Identities=26% Similarity=0.384 Sum_probs=41.5
Q ss_pred ccCCCeEEEEEEcCCCC-------CCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCC
Q psy15201 11 VSGVNQLGVVINKLDTV-------SWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLT 69 (97)
Q Consensus 11 ~lGvk~~Iv~INK~D~v-------~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~ 69 (97)
-||| +++||++|.|.. +|.+++|+.|...++.+.-+.| ..+|.+|.....|+.
T Consensus 194 nlGi-pi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yG-----AsL~yts~~~~~n~~ 253 (472)
T PF05783_consen 194 NLGI-PIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYG-----ASLIYTSVKEEKNLD 253 (472)
T ss_pred ccCc-ceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcC-----CeEEEeeccccccHH
Confidence 3788 699999999954 3778889999888888775554 688888887776664
No 257
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=93.95 E-value=0.075 Score=40.68 Aligned_cols=42 Identities=26% Similarity=0.307 Sum_probs=29.8
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~ 72 (97)
++.++++||+|+.. .+ ++..+.+. ...+|+||..|.|+++..
T Consensus 240 ~p~l~v~NKiD~~~--~e-------~~~~l~~~-------~~~v~isa~~~~nld~L~ 281 (365)
T COG1163 240 KPALYVVNKIDLPG--LE-------ELERLARK-------PNSVPISAKKGINLDELK 281 (365)
T ss_pred eeeEEEEecccccC--HH-------HHHHHHhc-------cceEEEecccCCCHHHHH
Confidence 57899999999985 22 22233321 267999999999997754
No 258
>KOG0081|consensus
Probab=93.94 E-value=0.084 Score=36.97 Aligned_cols=48 Identities=23% Similarity=0.273 Sum_probs=34.7
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
+.+|++-||.|+.+ +.... .++...+..+.+ .|.+..||-+|.|+.+.
T Consensus 125 PDivlcGNK~DL~~--~R~Vs--~~qa~~La~kyg-----lPYfETSA~tg~Nv~ka 172 (219)
T KOG0081|consen 125 PDIVLCGNKADLED--QRVVS--EDQAAALADKYG-----LPYFETSACTGTNVEKA 172 (219)
T ss_pred CCEEEEcCccchhh--hhhhh--HHHHHHHHHHhC-----CCeeeeccccCcCHHHH
Confidence 45899999999864 22222 345555666666 59999999999998654
No 259
>KOG0092|consensus
Probab=93.78 E-value=0.044 Score=38.91 Aligned_cols=44 Identities=25% Similarity=0.314 Sum_probs=31.3
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 18 GVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 18 Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
-+|-||+|+.+. .+.-.++.+.+.+..+ ..++..||.+|.|+.+
T Consensus 114 alvGNK~DL~~~----R~V~~~ea~~yAe~~g-----ll~~ETSAKTg~Nv~~ 157 (200)
T KOG0092|consen 114 ALVGNKADLLER----REVEFEEAQAYAESQG-----LLFFETSAKTGENVNE 157 (200)
T ss_pred EEecchhhhhhc----ccccHHHHHHHHHhcC-----CEEEEEecccccCHHH
Confidence 348899999751 1122355666776665 4899999999999965
No 260
>KOG0076|consensus
Probab=93.78 E-value=0.028 Score=39.52 Aligned_cols=49 Identities=27% Similarity=0.314 Sum_probs=30.0
Q ss_pred eEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhC-CCCCCceEEEeeeccCCCCCC
Q psy15201 16 QLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAG-FRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 16 ~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~-~~~~~~~iipiSA~~G~ni~~ 70 (97)
++++..||-|+-+ .-.. +++...+.... .+..+.++.||||++|+|+.+
T Consensus 128 p~L~lankqd~q~--~~~~----~El~~~~~~~e~~~~rd~~~~pvSal~gegv~e 177 (197)
T KOG0076|consen 128 PVLVLANKQDLQN--AMEA----AELDGVFGLAELIPRRDNPFQPVSALTGEGVKE 177 (197)
T ss_pred chhhhcchhhhhh--hhhH----HHHHHHhhhhhhcCCccCccccchhhhcccHHH
Confidence 5677788888764 2222 22333332211 223468999999999999854
No 261
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=93.68 E-value=0.079 Score=36.66 Aligned_cols=45 Identities=20% Similarity=0.253 Sum_probs=28.4
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
.+++++.||+|+.+ .+.. .+...+.+..+ ..++++||.+|.|+.+
T Consensus 114 ~~i~lv~nK~Dl~~-~~~~-----~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~ 158 (215)
T PTZ00132 114 IPIVLVGNKVDVKD-RQVK-----ARQITFHRKKN-----LQYYDISAKSNYNFEK 158 (215)
T ss_pred CCEEEEEECccCcc-ccCC-----HHHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 46788899999864 1111 11112333222 5789999999999865
No 262
>KOG0073|consensus
Probab=93.57 E-value=0.14 Score=35.76 Aligned_cols=54 Identities=30% Similarity=0.409 Sum_probs=33.7
Q ss_pred eccCCCeEEEEEEcCCCCC-CCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 10 AVSGVNQLGVVINKLDTVS-WSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 10 ~~lGvk~~Iv~INK~D~v~-~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
+.+| ++++++.||.|+.+ -+.+.+..+ -.+..+.+. ...+++.+||.+|+++.+
T Consensus 114 rlaG-~~~Lvlank~dl~~~l~~~~i~~~-~~L~~l~ks-----~~~~l~~cs~~tge~l~~ 168 (185)
T KOG0073|consen 114 RLAG-APLLVLANKQDLPGALSLEEISKA-LDLEELAKS-----HHWRLVKCSAVTGEDLLE 168 (185)
T ss_pred hhcC-CceEEEEecCcCccccCHHHHHHh-hCHHHhccc-----cCceEEEEeccccccHHH
Confidence 3456 67899999999874 122222211 223333332 347999999999998754
No 263
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=93.55 E-value=0.11 Score=35.68 Aligned_cols=15 Identities=40% Similarity=0.574 Sum_probs=13.3
Q ss_pred CCeEEEEEEcCCCCC
Q psy15201 14 VNQLGVVINKLDTVS 28 (97)
Q Consensus 14 vk~~Iv~INK~D~v~ 28 (97)
-++.|+++||+|+++
T Consensus 30 ~kp~IlVlNK~DL~~ 44 (172)
T cd04178 30 NKKLVLVLNKIDLVP 44 (172)
T ss_pred CCCEEEEEehhhcCC
Confidence 478999999999985
No 264
>PRK07560 elongation factor EF-2; Reviewed
Probab=93.46 E-value=0.12 Score=42.81 Aligned_cols=59 Identities=20% Similarity=0.169 Sum_probs=35.6
Q ss_pred eccCCCeEEEEEEcCCCCC--------CCHHHHHHHHHHHHHHHHHhC---------CCCCCceEEEeeeccCCCCC
Q psy15201 10 AVSGVNQLGVVINKLDTVS--------WSQDRFQEIVTKLGAFLKQAG---------FRDSDIEYVPCSGLTGENLT 69 (97)
Q Consensus 10 ~~lGvk~~Iv~INK~D~v~--------~~~~~~~~i~~~l~~~l~~~~---------~~~~~~~iipiSA~~G~ni~ 69 (97)
...|++ .|+++||||+.. ..++++.++.+++..++..+. +.+.+-.++..||++|.+..
T Consensus 136 ~~~~~~-~iv~iNK~D~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~ 211 (731)
T PRK07560 136 LRERVK-PVLFINKVDRLIKELKLTPQEMQQRLLKIIKDVNKLIKGMAPEEFKEKWKVDVEDGTVAFGSALYNWAIS 211 (731)
T ss_pred HHcCCC-eEEEEECchhhcccccCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcceeecCCCCcEeeeeccccccee
Confidence 345775 589999999762 223556666666666554331 22223346677888876654
No 265
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=93.42 E-value=0.06 Score=34.99 Aligned_cols=48 Identities=29% Similarity=0.306 Sum_probs=32.5
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
-.++|++.||.|+.+. ..+. .++.+.+.+..+ .+++.+||.+|.|+.+
T Consensus 104 ~~~iivvg~K~D~~~~--~~v~--~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~ 151 (162)
T PF00071_consen 104 DIPIIVVGNKSDLSDE--REVS--VEEAQEFAKELG-----VPYFEVSAKNGENVKE 151 (162)
T ss_dssp TSEEEEEEETTTGGGG--SSSC--HHHHHHHHHHTT-----SEEEEEBTTTTTTHHH
T ss_pred cccceeeecccccccc--ccch--hhHHHHHHHHhC-----CEEEEEECCCCCCHHH
Confidence 3589999999998741 1111 233455555443 6999999999999854
No 266
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=93.40 E-value=0.059 Score=42.55 Aligned_cols=45 Identities=29% Similarity=0.268 Sum_probs=30.5
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~ 72 (97)
-+++++++||.|++.... .... + .. ...+++++||++|+|+....
T Consensus 324 ~~~~i~v~NK~DL~~~~~---------~~~~--~--~~-~~~~~i~iSa~t~~Gl~~L~ 368 (454)
T COG0486 324 KKPIIVVLNKADLVSKIE---------LESE--K--LA-NGDAIISISAKTGEGLDALR 368 (454)
T ss_pred CCCEEEEEechhcccccc---------cchh--h--cc-CCCceEEEEecCccCHHHHH
Confidence 367899999999986211 0111 1 11 23489999999999997765
No 267
>KOG0463|consensus
Probab=91.96 E-value=0.39 Score=37.97 Aligned_cols=55 Identities=29% Similarity=0.362 Sum_probs=39.9
Q ss_pred cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCC--------------------C-CCCceEEEeeeccCCCCC
Q psy15201 12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGF--------------------R-DSDIEYVPCSGLTGENLT 69 (97)
Q Consensus 12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~--------------------~-~~~~~iipiSA~~G~ni~ 69 (97)
|-| ++.++++|+|.|+ ...++|....+..+++..++ . ..-+||+.+|-.+|+|+.
T Consensus 272 L~V-PVfvVVTKIDMCP--ANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~ 347 (641)
T KOG0463|consen 272 LHV-PVFVVVTKIDMCP--ANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLP 347 (641)
T ss_pred hcC-cEEEEEEeeccCc--HHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChH
Confidence 445 5788999999996 55677777788888875443 1 112588889999998874
No 268
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=91.75 E-value=0.18 Score=39.47 Aligned_cols=39 Identities=18% Similarity=0.164 Sum_probs=24.4
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLT 69 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~ 69 (97)
+++|+++||+|+.+. + ...+.+..+ .+++++||++ .|+.
T Consensus 311 ~piIlV~NK~Dl~~~--~--------~~~~~~~~~-----~~~~~vSak~-~gI~ 349 (442)
T TIGR00450 311 KPFILVLNKIDLKIN--S--------LEFFVSSKV-----LNSSNLSAKQ-LKIK 349 (442)
T ss_pred CCEEEEEECccCCCc--c--------hhhhhhhcC-----CceEEEEEec-CCHH
Confidence 478999999999742 1 111122222 4788999998 3543
No 269
>PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins. ; PDB: 1WXQ_A.
Probab=91.63 E-value=0.19 Score=32.49 Aligned_cols=35 Identities=23% Similarity=0.273 Sum_probs=18.5
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCC
Q psy15201 20 VINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGE 66 (97)
Q Consensus 20 ~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ 66 (97)
|.||+|+.. +++-+++++++ . ...++||+||...-
T Consensus 1 AaNK~D~~~-a~~ni~kl~~~-------~----~~~~vVp~SA~aEl 35 (109)
T PF08438_consen 1 AANKADLPA-ADENIEKLKEK-------Y----PDEPVVPTSAAAEL 35 (109)
T ss_dssp EEE-GGG-S--HHHHHHHHHH-------H----TT-EEEEE-HHHHH
T ss_pred CCccccccc-cHhHHHHHHHh-------C----CCCceeeccHHHHH
Confidence 689999754 45555554431 1 13688999987544
No 270
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=91.38 E-value=0.35 Score=34.64 Aligned_cols=30 Identities=13% Similarity=0.258 Sum_probs=19.4
Q ss_pred cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q psy15201 12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFL 45 (97)
Q Consensus 12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l 45 (97)
.|+ +.|+++||+|+... .+.++.++++..+
T Consensus 115 ~~~-P~iivvNK~D~~~a---~~~~~~~~i~~~~ 144 (237)
T cd04168 115 LNI-PTIIFVNKIDRAGA---DLEKVYQEIKEKL 144 (237)
T ss_pred cCC-CEEEEEECccccCC---CHHHHHHHHHHHH
Confidence 465 56889999998752 2344555555544
No 271
>KOG0098|consensus
Probab=91.09 E-value=0.083 Score=37.66 Aligned_cols=46 Identities=24% Similarity=0.271 Sum_probs=34.0
Q ss_pred EEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 17 LGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 17 ~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
++++-||+|+.. +.+--+++-+.+.++-++ .+...||.+++|+.+-
T Consensus 114 ImLiGNKsDL~~----rR~Vs~EEGeaFA~ehgL-----ifmETSakt~~~VEEa 159 (216)
T KOG0098|consen 114 IMLIGNKSDLEA----RREVSKEEGEAFAREHGL-----IFMETSAKTAENVEEA 159 (216)
T ss_pred EEEEcchhhhhc----cccccHHHHHHHHHHcCc-----eeehhhhhhhhhHHHH
Confidence 677889999874 223335677778877654 6779999999999764
No 272
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=91.09 E-value=0.63 Score=34.13 Aligned_cols=33 Identities=18% Similarity=0.271 Sum_probs=25.1
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAG 49 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~ 49 (97)
.++|+|+||+|++. ++.....++.+++.++..+
T Consensus 144 v~vi~VinK~D~l~--~~e~~~~k~~i~~~l~~~~ 176 (276)
T cd01850 144 VNIIPVIAKADTLT--PEELKEFKQRIMEDIEEHN 176 (276)
T ss_pred CCEEEEEECCCcCC--HHHHHHHHHHHHHHHHHcC
Confidence 46899999999974 5555667777877777655
No 273
>KOG2484|consensus
Probab=91.04 E-value=0.51 Score=37.05 Aligned_cols=31 Identities=39% Similarity=0.654 Sum_probs=22.7
Q ss_pred CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhC
Q psy15201 13 GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAG 49 (97)
Q Consensus 13 Gvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~ 49 (97)
|-+++|+++||+|+|+ .+..+....||+..+
T Consensus 176 gnKkLILVLNK~DLVP------rEv~e~Wl~YLr~~~ 206 (435)
T KOG2484|consen 176 GNKKLILVLNKIDLVP------REVVEKWLVYLRREG 206 (435)
T ss_pred CCceEEEEeehhccCC------HHHHHHHHHHHHhhC
Confidence 5689999999999997 233555666676543
No 274
>KOG0094|consensus
Probab=90.88 E-value=0.59 Score=33.58 Aligned_cols=46 Identities=22% Similarity=0.200 Sum_probs=29.7
Q ss_pred eEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 16 QLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 16 ~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
-+.+|-||.||++ +..+.. ++-+...+.++ +.++.+||..|.|+..
T Consensus 130 iI~LVGnKtDL~d--krqvs~--eEg~~kAkel~-----a~f~etsak~g~NVk~ 175 (221)
T KOG0094|consen 130 IIFLVGNKTDLSD--KRQVSI--EEGERKAKELN-----AEFIETSAKAGENVKQ 175 (221)
T ss_pred EEEEEcccccccc--hhhhhH--HHHHHHHHHhC-----cEEEEecccCCCCHHH
Confidence 4677889999996 322221 22222333333 6899999999999853
No 275
>KOG0072|consensus
Probab=90.68 E-value=0.44 Score=32.88 Aligned_cols=51 Identities=25% Similarity=0.283 Sum_probs=30.5
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
..++|+.||+|... ...+ .++...+.....+.....|+..||.+|+|++..
T Consensus 120 a~llv~anKqD~~~-~~t~-----~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~ 170 (182)
T KOG0072|consen 120 AKLLVFANKQDYSG-ALTR-----SEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPA 170 (182)
T ss_pred ceEEEEeccccchh-hhhH-----HHHHHHhChHHHhhheeEEEeeccccccCCcHH
Confidence 66889999999653 1221 122111111112223479999999999999653
No 276
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=90.48 E-value=0.57 Score=34.18 Aligned_cols=30 Identities=27% Similarity=0.334 Sum_probs=18.5
Q ss_pred cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q psy15201 12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFL 45 (97)
Q Consensus 12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l 45 (97)
.++ ++|+++||+|+... .+.++.++++..+
T Consensus 122 ~~~-P~iivvNK~D~~~a---~~~~~~~~l~~~l 151 (267)
T cd04169 122 RGI-PIITFINKLDREGR---DPLELLDEIEEEL 151 (267)
T ss_pred cCC-CEEEEEECCccCCC---CHHHHHHHHHHHH
Confidence 465 48899999998642 2333444555444
No 277
>KOG1532|consensus
Probab=90.45 E-value=0.48 Score=35.96 Aligned_cols=54 Identities=24% Similarity=0.394 Sum_probs=32.2
Q ss_pred eEEEEEEcCCCCC------CCHHHHHHHHHHHHH--------HHHHhCCC----CCCceEEEeeeccCCCCCC
Q psy15201 16 QLGVVINKLDTVS------WSQDRFQEIVTKLGA--------FLKQAGFR----DSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 16 ~~Iv~INK~D~v~------~~~~~~~~i~~~l~~--------~l~~~~~~----~~~~~iipiSA~~G~ni~~ 70 (97)
++|++.||.|+++ | ...|+..++.+++ +...+... -.+...+.+||.+|.|.+.
T Consensus 183 p~ivvfNK~Dv~d~~fa~eW-m~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~dd 254 (366)
T KOG1532|consen 183 PFIVVFNKTDVSDSEFALEW-MTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDD 254 (366)
T ss_pred CeEEEEecccccccHHHHHH-HHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHH
Confidence 6899999999986 2 1233333333331 11111100 0246789999999999864
No 278
>KOG0394|consensus
Probab=89.63 E-value=0.35 Score=34.43 Aligned_cols=49 Identities=22% Similarity=0.291 Sum_probs=34.0
Q ss_pred eEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 16 QLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 16 ~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
|+|++-||+|.-+ .++|.. -.++.+..-+..+ +.|.+.+||+.+.|+..
T Consensus 120 PFVilGNKiD~~~-~~~r~V-S~~~Aq~WC~s~g----nipyfEtSAK~~~NV~~ 168 (210)
T KOG0394|consen 120 PFVILGNKIDVDG-GKSRQV-SEKKAQTWCKSKG----NIPYFETSAKEATNVDE 168 (210)
T ss_pred cEEEEcccccCCC-Ccccee-eHHHHHHHHHhcC----CceeEEecccccccHHH
Confidence 6899999999854 232322 1344455555433 58999999999999965
No 279
>KOG0093|consensus
Probab=89.47 E-value=0.19 Score=34.80 Aligned_cols=46 Identities=26% Similarity=0.241 Sum_probs=33.0
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLT 69 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~ 69 (97)
.++|++-||+|+-+ +..+. .++.+.+.+++|| .++..||+...|+.
T Consensus 127 aqvilvgnKCDmd~--eRvis--~e~g~~l~~~LGf-----efFEtSaK~NinVk 172 (193)
T KOG0093|consen 127 AQVILVGNKCDMDS--ERVIS--HERGRQLADQLGF-----EFFETSAKENINVK 172 (193)
T ss_pred ceEEEEecccCCcc--ceeee--HHHHHHHHHHhCh-----HHhhhcccccccHH
Confidence 47999999999853 22211 2556677788886 77888999888874
No 280
>KOG0091|consensus
Probab=89.39 E-value=0.42 Score=33.62 Aligned_cols=47 Identities=23% Similarity=0.215 Sum_probs=33.3
Q ss_pred EEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCC
Q psy15201 17 LGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72 (97)
Q Consensus 17 ~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~ 72 (97)
+.+|-.|.|+. ++. .-..++.+.+.+..+ +.+|..||.+|.|+++..
T Consensus 119 FlLVGhKsDL~--SqR--qVt~EEaEklAa~hg-----M~FVETSak~g~NVeEAF 165 (213)
T KOG0091|consen 119 FLLVGHKSDLQ--SQR--QVTAEEAEKLAASHG-----MAFVETSAKNGCNVEEAF 165 (213)
T ss_pred EEEeccccchh--hhc--cccHHHHHHHHHhcC-----ceEEEecccCCCcHHHHH
Confidence 34566899986 333 223466666766655 699999999999997754
No 281
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=89.15 E-value=0.91 Score=32.68 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=19.8
Q ss_pred eccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q psy15201 10 AVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFL 45 (97)
Q Consensus 10 ~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l 45 (97)
+..|+ +.++++||+|+... .+++..++++..+
T Consensus 113 ~~~~~-p~iivvNK~D~~~~---~~~~~~~~l~~~~ 144 (268)
T cd04170 113 DEAGI-PRIIFINKMDRERA---DFDKTLAALQEAF 144 (268)
T ss_pred HHcCC-CEEEEEECCccCCC---CHHHHHHHHHHHh
Confidence 34565 46789999998752 3444455555443
No 282
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=88.83 E-value=0.4 Score=40.40 Aligned_cols=34 Identities=12% Similarity=0.290 Sum_probs=23.1
Q ss_pred cCCCeEEEEEEcCCCCC----CCH----HHHHHHHHHHHHHHH
Q psy15201 12 SGVNQLGVVINKLDTVS----WSQ----DRFQEIVTKLGAFLK 46 (97)
Q Consensus 12 lGvk~~Iv~INK~D~v~----~~~----~~~~~i~~~l~~~l~ 46 (97)
.++ +.|+++||||+.- .+. .++.++.++++..+.
T Consensus 149 ~~~-p~i~~iNK~D~~~~~~~~~~~~~~~~~~~vi~~in~~~~ 190 (843)
T PLN00116 149 ERI-RPVLTVNKMDRCFLELQVDGEEAYQTFSRVIENANVIMA 190 (843)
T ss_pred CCC-CEEEEEECCcccchhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 444 5799999999872 112 577777788875544
No 283
>KOG1490|consensus
Probab=88.55 E-value=0.6 Score=37.87 Aligned_cols=54 Identities=17% Similarity=0.218 Sum_probs=33.9
Q ss_pred cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
+--++.|+|+||+|... .+.+.+-.+++.+.++.-+ +++++..|..+.+|+-..
T Consensus 279 FaNK~~IlvlNK~D~m~--~edL~~~~~~ll~~~~~~~----~v~v~~tS~~~eegVm~V 332 (620)
T KOG1490|consen 279 FANKVTILVLNKIDAMR--PEDLDQKNQELLQTIIDDG----NVKVVQTSCVQEEGVMDV 332 (620)
T ss_pred hcCCceEEEeecccccC--ccccCHHHHHHHHHHHhcc----CceEEEecccchhceeeH
Confidence 44567999999999774 1222222233333333222 379999999999998653
No 284
>KOG0097|consensus
Probab=88.34 E-value=0.47 Score=32.66 Aligned_cols=46 Identities=22% Similarity=0.291 Sum_probs=31.6
Q ss_pred eEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 16 QLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 16 ~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
-++++-||.|+.. +.+...++...+.+..+ .-++..||.+|.|+..
T Consensus 118 ~i~lignkadle~----qrdv~yeeak~faeeng-----l~fle~saktg~nved 163 (215)
T KOG0097|consen 118 VIFLIGNKADLES----QRDVTYEEAKEFAEENG-----LMFLEASAKTGQNVED 163 (215)
T ss_pred EEEEecchhhhhh----cccCcHHHHHHHHhhcC-----eEEEEecccccCcHHH
Confidence 3677789999863 22223345556666655 4789999999999854
No 285
>KOG0070|consensus
Probab=87.99 E-value=0.62 Score=32.70 Aligned_cols=16 Identities=25% Similarity=0.439 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHH
Q psy15201 31 QDRFQEIVTKLGAFLK 46 (97)
Q Consensus 31 ~~~~~~i~~~l~~~l~ 46 (97)
.+|+.+.++++...+.
T Consensus 97 r~Ri~eak~eL~~~l~ 112 (181)
T KOG0070|consen 97 RERIEEAKEELHRMLA 112 (181)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 5566666666655553
No 286
>KOG0395|consensus
Probab=87.87 E-value=0.49 Score=33.09 Aligned_cols=49 Identities=18% Similarity=0.031 Sum_probs=31.5
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
--|+|+|.||.|+... |. --.++.+.+.+..+ .+++.+||....|+.+.
T Consensus 108 ~~PivlVGNK~Dl~~~---R~-V~~eeg~~la~~~~-----~~f~E~Sak~~~~v~~~ 156 (196)
T KOG0395|consen 108 DVPIILVGNKCDLERE---RQ-VSEEEGKALARSWG-----CAFIETSAKLNYNVDEV 156 (196)
T ss_pred CCCEEEEEEcccchhc---cc-cCHHHHHHHHHhcC-----CcEEEeeccCCcCHHHH
Confidence 3579999999998741 11 11233334433333 57999999999887654
No 287
>PTZ00416 elongation factor 2; Provisional
Probab=87.48 E-value=1.4 Score=37.15 Aligned_cols=34 Identities=15% Similarity=0.321 Sum_probs=24.3
Q ss_pred cCCCeEEEEEEcCCCC----CCC----HHHHHHHHHHHHHHHH
Q psy15201 12 SGVNQLGVVINKLDTV----SWS----QDRFQEIVTKLGAFLK 46 (97)
Q Consensus 12 lGvk~~Iv~INK~D~v----~~~----~~~~~~i~~~l~~~l~ 46 (97)
.++ ++|+++||||+. ..+ ..++.++.++++..+.
T Consensus 143 ~~~-p~iv~iNK~D~~~~~~~~~~~~~~~~~~~ii~~in~~l~ 184 (836)
T PTZ00416 143 ERI-RPVLFINKVDRAILELQLDPEEIYQNFVKTIENVNVIIA 184 (836)
T ss_pred cCC-CEEEEEEChhhhhhhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 453 689999999987 211 2577888888887765
No 288
>KOG0086|consensus
Probab=87.38 E-value=0.45 Score=33.19 Aligned_cols=53 Identities=19% Similarity=0.239 Sum_probs=30.3
Q ss_pred eeccCCCe--EEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 9 SAVSGVNQ--LGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 9 ~~~lGvk~--~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
+|+|--.. +|++-||-|+-+. .... -.+..++.+ .+..-++..||++|+|+.+
T Consensus 107 aR~lAs~nIvviL~GnKkDL~~~--R~Vt--flEAs~Faq-----Enel~flETSa~TGeNVEE 161 (214)
T KOG0086|consen 107 ARTLASPNIVVILCGNKKDLDPE--REVT--FLEASRFAQ-----ENELMFLETSALTGENVEE 161 (214)
T ss_pred HHhhCCCcEEEEEeCChhhcChh--hhhh--HHHHHhhhc-----ccceeeeeecccccccHHH
Confidence 34444333 5667799998641 1111 112222322 2346788999999999965
No 289
>KOG0084|consensus
Probab=87.07 E-value=0.52 Score=33.63 Aligned_cols=46 Identities=20% Similarity=0.224 Sum_probs=30.6
Q ss_pred eEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCce-EEEeeeccCCCCCC
Q psy15201 16 QLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIE-YVPCSGLTGENLTT 70 (97)
Q Consensus 16 ~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~-iipiSA~~G~ni~~ 70 (97)
+.+++-||.|+.+ ..... .++.+.+....+ .+ +.++||+.+.|+.+
T Consensus 116 ~~lLVGNK~Dl~~--~~~v~--~~~a~~fa~~~~-----~~~f~ETSAK~~~NVe~ 162 (205)
T KOG0084|consen 116 PKLLVGNKCDLTE--KRVVS--TEEAQEFADELG-----IPIFLETSAKDSTNVED 162 (205)
T ss_pred CeEEEeeccccHh--heecC--HHHHHHHHHhcC-----CcceeecccCCccCHHH
Confidence 5788899999874 11111 133355555544 35 99999999998854
No 290
>KOG4146|consensus
Probab=87.06 E-value=1.2 Score=28.18 Aligned_cols=34 Identities=29% Similarity=0.536 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCC-CCCceEEEeeeccC
Q psy15201 16 QLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFR-DSDIEYVPCSGLTG 65 (97)
Q Consensus 16 ~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~-~~~~~iipiSA~~G 65 (97)
.+|+.||+|| | +++++..++ .+...++.||-++|
T Consensus 66 Gii~lINd~D---W-------------Ellekedy~ledgD~ivfiSTlHG 100 (101)
T KOG4146|consen 66 GIIVLINDMD---W-------------ELLEKEDYPLEDGDHIVFISTLHG 100 (101)
T ss_pred cEEEEEeccc---h-------------hhhcccccCcccCCEEEEEEeccC
Confidence 4899999998 3 011111222 23467888998887
No 291
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=86.52 E-value=0.86 Score=36.58 Aligned_cols=28 Identities=21% Similarity=0.171 Sum_probs=19.1
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFL 45 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l 45 (97)
.++|+++||+|+... .+.++.++++..+
T Consensus 133 ~PiivviNKiD~~~~---~~~~ll~~i~~~l 160 (527)
T TIGR00503 133 TPIFTFMNKLDRDIR---DPLELLDEVENEL 160 (527)
T ss_pred CCEEEEEECccccCC---CHHHHHHHHHHHh
Confidence 468999999998642 2344556666655
No 292
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=86.36 E-value=0.57 Score=27.05 Aligned_cols=14 Identities=36% Similarity=0.368 Sum_probs=9.4
Q ss_pred cCCCeEEEEEEcCC
Q psy15201 12 SGVNQLGVVINKLD 25 (97)
Q Consensus 12 lGvk~~Iv~INK~D 25 (97)
++-+++++|+||+|
T Consensus 45 F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 45 FPNKPVIVVLNKID 58 (58)
T ss_dssp TTTS-EEEEE--TT
T ss_pred cCCCCEEEEEeccC
Confidence 55789999999998
No 293
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=86.28 E-value=1.6 Score=33.08 Aligned_cols=36 Identities=19% Similarity=0.246 Sum_probs=22.1
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeee
Q psy15201 18 GVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSG 62 (97)
Q Consensus 18 Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA 62 (97)
++++||.|+++ .+..+.+++ .+++++- ..+|++.|.
T Consensus 149 ~ivlNK~Dlv~--~~~l~~l~~----~l~~lnp---~A~i~~~~~ 184 (323)
T COG0523 149 VIVLNKTDLVD--AEELEALEA----RLRKLNP---RARIIETSY 184 (323)
T ss_pred EEEEecccCCC--HHHHHHHHH----HHHHhCC---CCeEEEccc
Confidence 68899999996 333444433 3444332 467777665
No 294
>KOG0087|consensus
Probab=85.80 E-value=0.65 Score=33.51 Aligned_cols=47 Identities=21% Similarity=0.176 Sum_probs=30.4
Q ss_pred eEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 16 QLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 16 ~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++++-||.|+-. +..--.++.+.+.+..+ ..++.+||+.+.|+.+.
T Consensus 121 vimLvGNK~DL~~----lraV~te~~k~~Ae~~~-----l~f~EtSAl~~tNVe~a 167 (222)
T KOG0087|consen 121 VIMLVGNKSDLNH----LRAVPTEDGKAFAEKEG-----LFFLETSALDATNVEKA 167 (222)
T ss_pred EEEEeecchhhhh----ccccchhhhHhHHHhcC-----ceEEEecccccccHHHH
Confidence 4788999999853 11111233444444433 58899999999998653
No 295
>KOG1424|consensus
Probab=85.59 E-value=1.8 Score=35.06 Aligned_cols=45 Identities=20% Similarity=0.238 Sum_probs=30.7
Q ss_pred CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCC
Q psy15201 13 GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENL 68 (97)
Q Consensus 13 Gvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni 68 (97)
+-|+.++++||.|+.+ . +.+.....|+.+. +++++.-||+...-.
T Consensus 204 ~~K~~~LLvNKaDLl~-~-----~qr~aWa~YF~~~-----ni~~vf~SA~~at~~ 248 (562)
T KOG1424|consen 204 PSKANVLLVNKADLLP-P-----EQRVAWAEYFRQN-----NIPVVFFSALAATEQ 248 (562)
T ss_pred cccceEEEEehhhcCC-H-----HHHHHHHHHHHhc-----CceEEEEeccccccc
Confidence 3477899999999986 1 2234455565443 379999999984433
No 296
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=85.33 E-value=0.8 Score=31.75 Aligned_cols=15 Identities=20% Similarity=0.118 Sum_probs=12.6
Q ss_pred CCeEEEEEEcCCCCC
Q psy15201 14 VNQLGVVINKLDTVS 28 (97)
Q Consensus 14 vk~~Iv~INK~D~v~ 28 (97)
-.+++++.||+|+..
T Consensus 109 ~~pvliv~NK~Dl~~ 123 (203)
T cd04105 109 KIPVLIACNKQDLFT 123 (203)
T ss_pred CCCEEEEecchhhcc
Confidence 457999999999874
No 297
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=84.77 E-value=2.9 Score=29.24 Aligned_cols=53 Identities=23% Similarity=0.169 Sum_probs=29.2
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~ 72 (97)
.++|++-||.|+.+......+........+-++.+ .+-|-+++.+...+...+
T Consensus 130 ~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia~~~~-----~~~i~~~c~~~~~~~~~~ 182 (202)
T cd04102 130 IPLLVIGTKLDQIPEKESSGNLVLTARGFVAEQGN-----AEEINLNCTNGRLLAAGS 182 (202)
T ss_pred ceEEEEEECccchhhcccchHHHhhHhhhHHHhcC-----CceEEEecCCcccccCCC
Confidence 47999999999974211111111122222334444 466777777777665544
No 298
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=84.45 E-value=0.61 Score=31.67 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=13.0
Q ss_pred EEEEEcCCCCCCCHH-HHHHHHHHHH
Q psy15201 18 GVVINKLDTVSWSQD-RFQEIVTKLG 42 (97)
Q Consensus 18 Iv~INK~D~v~~~~~-~~~~i~~~l~ 42 (97)
++++||+|+++ ++ +++++++.++
T Consensus 145 vIvlnK~D~~~--~~~~i~~~~~~ir 168 (178)
T PF02492_consen 145 VIVLNKIDLVS--DEQKIERVREMIR 168 (178)
T ss_dssp EEEEE-GGGHH--HH--HHHHHHHHH
T ss_pred EEEEeccccCC--hhhHHHHHHHHHH
Confidence 67899999985 33 3344444433
No 299
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=84.43 E-value=1.7 Score=34.85 Aligned_cols=32 Identities=22% Similarity=0.257 Sum_probs=20.4
Q ss_pred eccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q psy15201 10 AVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFL 45 (97)
Q Consensus 10 ~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l 45 (97)
+..|+ ++|+++||+|+... .+.++.++++..+
T Consensus 128 ~~~~i-Piiv~iNK~D~~~a---~~~~~l~~i~~~l 159 (526)
T PRK00741 128 RLRDT-PIFTFINKLDRDGR---EPLELLDEIEEVL 159 (526)
T ss_pred HhcCC-CEEEEEECCccccc---CHHHHHHHHHHHh
Confidence 34566 58999999998742 2344455555544
No 300
>COG1084 Predicted GTPase [General function prediction only]
Probab=84.11 E-value=1.5 Score=33.61 Aligned_cols=46 Identities=28% Similarity=0.377 Sum_probs=28.8
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
.++|+|+||+|..+ +++.+++... +...+. ...+-+|+..|.+++.
T Consensus 281 ~p~v~V~nK~D~~~--~e~~~~~~~~----~~~~~~----~~~~~~~~~~~~~~d~ 326 (346)
T COG1084 281 APIVVVINKIDIAD--EEKLEEIEAS----VLEEGG----EEPLKISATKGCGLDK 326 (346)
T ss_pred CCeEEEEecccccc--hhHHHHHHHH----HHhhcc----ccccceeeeehhhHHH
Confidence 68999999999984 5565555444 222222 2334567777776654
No 301
>KOG1423|consensus
Probab=84.05 E-value=1.5 Score=33.72 Aligned_cols=18 Identities=22% Similarity=0.194 Sum_probs=15.5
Q ss_pred ceEEEeeeccCCCCCCCC
Q psy15201 55 IEYVPCSGLTGENLTTPS 72 (97)
Q Consensus 55 ~~iipiSA~~G~ni~~~~ 72 (97)
..++++||++|+|+.+..
T Consensus 246 e~vF~vSaL~G~Gikdlk 263 (379)
T KOG1423|consen 246 ERVFMVSALYGEGIKDLK 263 (379)
T ss_pred eeEEEEecccccCHHHHH
Confidence 569999999999997764
No 302
>KOG0088|consensus
Probab=83.93 E-value=1.1 Score=31.55 Aligned_cols=47 Identities=21% Similarity=0.215 Sum_probs=31.8
Q ss_pred eEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 16 QLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 16 ~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.+++|-||+|+.+ ......++.+.+.+..| ...+..||....|+.+.
T Consensus 120 ~l~IVGNKiDLEe----eR~Vt~qeAe~YAesvG-----A~y~eTSAk~N~Gi~el 166 (218)
T KOG0088|consen 120 ELLIVGNKIDLEE----ERQVTRQEAEAYAESVG-----ALYMETSAKDNVGISEL 166 (218)
T ss_pred EEEEecCcccHHH----hhhhhHHHHHHHHHhhc-----hhheecccccccCHHHH
Confidence 3678889999853 22333455666666665 46678899998888654
No 303
>COG1161 Predicted GTPases [General function prediction only]
Probab=83.08 E-value=2.8 Score=31.50 Aligned_cols=51 Identities=16% Similarity=0.153 Sum_probs=30.3
Q ss_pred ccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 11 VSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 11 ~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
..+-++.++++||.|+++ ... .++...++.... ....+.+|+..+.+....
T Consensus 58 ~v~~k~~i~vlNK~DL~~--~~~----~~~W~~~~~~~~----~~~~~~v~~~~~~~~~~i 108 (322)
T COG1161 58 IVKEKPKLLVLNKADLAP--KEV----TKKWKKYFKKEE----GIKPIFVSAKSRQGGKKI 108 (322)
T ss_pred HHccCCcEEEEehhhcCC--HHH----HHHHHHHHHhcC----CCccEEEEeecccCccch
Confidence 355667799999999996 222 233333333321 245577777777766443
No 304
>KOG0083|consensus
Probab=81.92 E-value=0.49 Score=32.34 Aligned_cols=45 Identities=24% Similarity=0.236 Sum_probs=27.7
Q ss_pred EEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 17 LGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 17 ~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
+.++-||+|+.. +|.-. +++-+.+.+..+ .|++..||.+|.|++.
T Consensus 106 l~llgnk~d~a~---er~v~-~ddg~kla~~y~-----ipfmetsaktg~nvd~ 150 (192)
T KOG0083|consen 106 LMLLGNKCDLAH---ERAVK-RDDGEKLAEAYG-----IPFMETSAKTGFNVDL 150 (192)
T ss_pred Hhhhccccccch---hhccc-cchHHHHHHHHC-----CCceeccccccccHhH
Confidence 456678888752 12111 122333444444 6999999999999854
No 305
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=81.69 E-value=5.7 Score=28.65 Aligned_cols=48 Identities=25% Similarity=0.360 Sum_probs=29.4
Q ss_pred eEEEEEEcCCCCC--CCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccC
Q psy15201 16 QLGVVINKLDTVS--WSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTG 65 (97)
Q Consensus 16 ~~Iv~INK~D~v~--~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G 65 (97)
++-|.|+|||++. ..++.++.+++++...+...++ +.+.+...|-+..
T Consensus 113 ~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~--~~~~~~~TSI~D~ 162 (232)
T PF04670_consen 113 KVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGI--EDITFFLTSIWDE 162 (232)
T ss_dssp EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT---TSEEEEEE-TTST
T ss_pred eEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccc--cceEEEeccCcCc
Confidence 4778899999985 2234456666666666665554 2578888887764
No 306
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=81.28 E-value=2.5 Score=32.01 Aligned_cols=30 Identities=17% Similarity=0.233 Sum_probs=20.2
Q ss_pred cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHH
Q psy15201 12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAF 44 (97)
Q Consensus 12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~ 44 (97)
+.... ++++||+|+++ ++.++++++.++.+
T Consensus 172 i~~AD-~IvlnK~Dl~~--~~~l~~~~~~l~~~ 201 (341)
T TIGR02475 172 LACAD-LVILNKADLLD--AAGLARVRAEIAAE 201 (341)
T ss_pred HHhCC-EEEEeccccCC--HHHHHHHHHHHHHh
Confidence 33433 67899999994 66666666666553
No 307
>KOG0467|consensus
Probab=80.47 E-value=3.4 Score=35.13 Aligned_cols=54 Identities=20% Similarity=0.308 Sum_probs=33.9
Q ss_pred eEEEEEEcCCCCC-----CCHH---HHHHHHHHHHHHHH-------------------HhCCCCCCceEEEeeeccCCCC
Q psy15201 16 QLGVVINKLDTVS-----WSQD---RFQEIVTKLGAFLK-------------------QAGFRDSDIEYVPCSGLTGENL 68 (97)
Q Consensus 16 ~~Iv~INK~D~v~-----~~~~---~~~~i~~~l~~~l~-------------------~~~~~~~~~~iipiSA~~G~ni 68 (97)
..|+||||||+.- .+++ +.-.+.+++...+. ...|.|..-.++..||+.|-++
T Consensus 126 ~~~lvinkidrl~~el~lsp~ea~~~l~r~i~~vn~~i~~~~~~~v~l~~~~~~i~d~~~~F~p~kgNVif~~A~~~~~f 205 (887)
T KOG0467|consen 126 KPILVINKIDRLITELKLSPQEAYEHLLRVIEQVNGVIGQFLGGIVELDDNWENIEDEEITFGPEDGNVIFASALDGWGF 205 (887)
T ss_pred ceEEEEehhhhHHHHHhcChHHHHHHHHHHHHHhhhHHHHhhcchhhccchhhhhhhcceeecCCCCcEEEEEecccccc
Confidence 3699999999331 1233 33344455554443 3346666678888999998876
Q ss_pred C
Q psy15201 69 T 69 (97)
Q Consensus 69 ~ 69 (97)
.
T Consensus 206 ~ 206 (887)
T KOG0467|consen 206 G 206 (887)
T ss_pred c
Confidence 3
No 308
>KOG2423|consensus
Probab=76.13 E-value=1.7 Score=34.64 Aligned_cols=15 Identities=40% Similarity=0.459 Sum_probs=13.7
Q ss_pred CCeEEEEEEcCCCCC
Q psy15201 14 VNQLGVVINKLDTVS 28 (97)
Q Consensus 14 vk~~Iv~INK~D~v~ 28 (97)
-+|+|.++||+|+|+
T Consensus 244 hKHli~vLNKvDLVP 258 (572)
T KOG2423|consen 244 HKHLIYVLNKVDLVP 258 (572)
T ss_pred cceeEEEeecccccc
Confidence 478999999999997
No 309
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=76.06 E-value=6.8 Score=27.29 Aligned_cols=16 Identities=19% Similarity=0.179 Sum_probs=11.1
Q ss_pred CCCeEEEEEEcCCCCC
Q psy15201 13 GVNQLGVVINKLDTVS 28 (97)
Q Consensus 13 Gvk~~Iv~INK~D~v~ 28 (97)
...++.++.||.|+..
T Consensus 111 ~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 111 NKPPILIACNKQDLFT 126 (181)
T ss_dssp T--EEEEEEE-TTSTT
T ss_pred CCCCEEEEEeCccccc
Confidence 3458999999999875
No 310
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=75.81 E-value=6 Score=30.74 Aligned_cols=55 Identities=18% Similarity=0.103 Sum_probs=35.4
Q ss_pred eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
..++--||++.+.||.|.... +. ++..++++.+.+.. +.++||+||....-+.+.
T Consensus 201 l~llt~KP~lyvaN~~e~~~~-~~--n~~~~~i~~~~~~~-----~~~vV~~sA~~E~eL~~l 255 (372)
T COG0012 201 LNLLTAKPMLYVANVSEDDLA-NL--NEYVKRLKELAAKE-----NAEVVPVSAAIELELREL 255 (372)
T ss_pred hhhhhcCCeEEEEECCccccc-ch--hHHHHHHHHHhhhc-----CCcEEEeeHHHHHHHHhC
Confidence 456778999999999997531 11 33334444444332 358999999876655443
No 311
>KOG2485|consensus
Probab=75.03 E-value=3.5 Score=31.49 Aligned_cols=18 Identities=22% Similarity=0.217 Sum_probs=15.6
Q ss_pred ccCCCeEEEEEEcCCCCC
Q psy15201 11 VSGVNQLGVVINKLDTVS 28 (97)
Q Consensus 11 ~lGvk~~Iv~INK~D~v~ 28 (97)
.++.++-|+|+||||+.+
T Consensus 70 ~~~~k~riiVlNK~DLad 87 (335)
T KOG2485|consen 70 FLPPKPRIIVLNKMDLAD 87 (335)
T ss_pred hcCCCceEEEEecccccC
Confidence 466788899999999996
No 312
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=73.78 E-value=4.4 Score=26.90 Aligned_cols=62 Identities=16% Similarity=0.221 Sum_probs=45.3
Q ss_pred eeccCCCeEEEEEEcCCCCCC--CHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 9 SAVSGVNQLGVVINKLDTVSW--SQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 9 ~~~lGvk~~Iv~INK~D~v~~--~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
|..=|...++|+--|++-+-| .....++-.+-+.++++.++..++.+.++-|||-.|+.+.+
T Consensus 49 Al~~GaDGV~v~GC~~geCHy~~GN~ka~rR~~~lke~l~elgie~eRv~~~wiSa~E~ekf~e 112 (132)
T COG1908 49 ALRKGADGVLVAGCKIGECHYISGNYKAKRRMELLKELLKELGIEPERVRVLWISAAEGEKFAE 112 (132)
T ss_pred HHHcCCCeEEEecccccceeeeccchHHHHHHHHHHHHHHHhCCCcceEEEEEEehhhHHHHHH
Confidence 444578888888888886643 23344444556677788888888889999999999887644
No 313
>KOG4252|consensus
Probab=73.64 E-value=1.5 Score=31.31 Aligned_cols=17 Identities=35% Similarity=0.116 Sum_probs=13.4
Q ss_pred CCeEEEEEEcCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWS 30 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~ 30 (97)
--|.|++-||+|+++.+
T Consensus 124 ~IPtV~vqNKIDlveds 140 (246)
T KOG4252|consen 124 RIPTVFVQNKIDLVEDS 140 (246)
T ss_pred cCCeEEeeccchhhHhh
Confidence 34689999999999643
No 314
>PRK13351 elongation factor G; Reviewed
Probab=71.80 E-value=4.6 Score=33.19 Aligned_cols=32 Identities=19% Similarity=0.315 Sum_probs=21.5
Q ss_pred eccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q psy15201 10 AVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFL 45 (97)
Q Consensus 10 ~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l 45 (97)
+..++ ++++++||+|+.. ..+.++.++++..+
T Consensus 122 ~~~~~-p~iiviNK~D~~~---~~~~~~~~~i~~~l 153 (687)
T PRK13351 122 DRYGI-PRLIFINKMDRVG---ADLFKVLEDIEERF 153 (687)
T ss_pred HhcCC-CEEEEEECCCCCC---CCHHHHHHHHHHHH
Confidence 34565 5688999999875 23555666666655
No 315
>PTZ00258 GTP-binding protein; Provisional
Probab=71.61 E-value=6.9 Score=30.44 Aligned_cols=50 Identities=16% Similarity=0.227 Sum_probs=31.4
Q ss_pred ccCCCeEEEEEEcC--CCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCC
Q psy15201 11 VSGVNQLGVVINKL--DTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENL 68 (97)
Q Consensus 11 ~lGvk~~Iv~INK~--D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni 68 (97)
.+--||+|+++|+. |+.+.+.+.. +++..+.+..+ ..+++|+||.....+
T Consensus 217 llt~KP~iyv~N~~E~D~~~~~~~~~----~~l~~~~~~~~----~~~~v~~sa~~E~el 268 (390)
T PTZ00258 217 LLTAKPMIYLVNMSEKDFIRQKNKWL----AKIKEWVGEKG----GGPIIPYSAEFEEEL 268 (390)
T ss_pred hhhcCCEEEEEECchhhhcccchHHH----HHHHHHHHhcC----CCeEEEeeHHHHHHH
Confidence 36679999999999 7632233333 34444443322 258999999776533
No 316
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=71.28 E-value=5.5 Score=33.31 Aligned_cols=31 Identities=29% Similarity=0.365 Sum_probs=19.5
Q ss_pred ccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q psy15201 11 VSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFL 45 (97)
Q Consensus 11 ~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l 45 (97)
--+|+ .|+.|||||+.. ..+....+++...+
T Consensus 126 ~~~vp-~i~fiNKmDR~~---a~~~~~~~~l~~~l 156 (697)
T COG0480 126 KYGVP-RILFVNKMDRLG---ADFYLVVEQLKERL 156 (697)
T ss_pred hcCCC-eEEEEECccccc---cChhhhHHHHHHHh
Confidence 35665 588899999885 33444445555444
No 317
>KOG0393|consensus
Probab=70.77 E-value=9.7 Score=27.05 Aligned_cols=51 Identities=20% Similarity=0.303 Sum_probs=33.8
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHH---------HHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIV---------TKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~---------~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
.++|++-+|.|+-+ +....+++. ++-..+.+++|. ...+.+||++..|+.+
T Consensus 110 vpiiLVGtk~DLr~-d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga----~~y~EcSa~tq~~v~~ 169 (198)
T KOG0393|consen 110 VPIILVGTKADLRD-DPSTLEKLQRQGLEPVTYEQGLELAKEIGA----VKYLECSALTQKGVKE 169 (198)
T ss_pred CCEEEEeehHHhhh-CHHHHHHHHhccCCcccHHHHHHHHHHhCc----ceeeeehhhhhCCcHH
Confidence 46889999999874 333333333 223344455554 7899999999999744
No 318
>KOG0075|consensus
Probab=70.14 E-value=6.8 Score=27.23 Aligned_cols=51 Identities=22% Similarity=0.304 Sum_probs=33.7
Q ss_pred ccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhC---CCCCCceEEEeeeccCCCCCCC
Q psy15201 11 VSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAG---FRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 11 ~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~---~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.-|+ ++.|.-||.|+.+. -+. . .++..++ .+..++..+.||+....|++..
T Consensus 120 l~gi-p~LVLGnK~d~~~A-L~~-----~---~li~rmgL~sitdREvcC~siScke~~Nid~~ 173 (186)
T KOG0075|consen 120 LTGI-PLLVLGNKIDLPGA-LSK-----I---ALIERMGLSSITDREVCCFSISCKEKVNIDIT 173 (186)
T ss_pred hcCC-cEEEecccccCccc-ccH-----H---HHHHHhCccccccceEEEEEEEEcCCccHHHH
Confidence 3455 67888999998761 111 1 1223333 4456789999999999998653
No 319
>PRK12740 elongation factor G; Reviewed
Probab=68.73 E-value=6 Score=32.31 Aligned_cols=31 Identities=26% Similarity=0.348 Sum_probs=20.2
Q ss_pred ccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q psy15201 11 VSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFL 45 (97)
Q Consensus 11 ~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l 45 (97)
..|+ ++|+++||+|+... ++.++.++++..+
T Consensus 110 ~~~~-p~iiv~NK~D~~~~---~~~~~~~~l~~~l 140 (668)
T PRK12740 110 KYGV-PRIIFVNKMDRAGA---DFFRVLAQLQEKL 140 (668)
T ss_pred HcCC-CEEEEEECCCCCCC---CHHHHHHHHHHHH
Confidence 3465 57889999998752 3445556666554
No 320
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=68.62 E-value=7.9 Score=29.88 Aligned_cols=51 Identities=14% Similarity=0.117 Sum_probs=31.8
Q ss_pred eccCCCeEEEEEEcCCC--CCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 10 AVSGVNQLGVVINKLDT--VSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 10 ~~lGvk~~Iv~INK~D~--v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
..+--||+|+++|+.|. .+ +.. ..+++..+.+..+ .+++|+||.-...+.+
T Consensus 195 ~llt~KP~i~v~N~~e~~~~~-~~~----~~~~i~~~~~~~~-----~~~i~~sa~~E~el~~ 247 (364)
T PRK09601 195 QLLTAKPVLYVANVDEDDLAD-GNP----YVKKVREIAAKEG-----AEVVVICAKIEAEIAE 247 (364)
T ss_pred cccccCCeEEEEECCcccccc-ccH----HHHHHHHHHHHcC-----CeEEEEEHHHHHHHHc
Confidence 34667999999999984 21 222 2344444444323 5899999976555533
No 321
>PF11372 DUF3173: Domain of unknown function (DUF3173); InterPro: IPR021512 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=68.14 E-value=2.5 Score=24.43 Aligned_cols=43 Identities=28% Similarity=0.526 Sum_probs=30.4
Q ss_pred EEcCCCCC--CCHHHHHHHHHHHHHHHHHhCCC---CCCceEEEeeec
Q psy15201 21 INKLDTVS--WSQDRFQEIVTKLGAFLKQAGFR---DSDIEYVPCSGL 63 (97)
Q Consensus 21 INK~D~v~--~~~~~~~~i~~~l~~~l~~~~~~---~~~~~iipiSA~ 63 (97)
|||-|+++ +++.....+..+...++-+-||. .+....+|.|+.
T Consensus 4 v~k~dLi~lGf~~~tA~~IIrqAK~~lV~~G~~~Y~nkRlg~VP~~~V 51 (59)
T PF11372_consen 4 VTKKDLIELGFSESTARDIIRQAKALLVQKGFSFYNNKRLGRVPASAV 51 (59)
T ss_pred cCHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCcccCCccCcccHHHH
Confidence 67888774 78888888888888777655653 334667777654
No 322
>KOG0071|consensus
Probab=65.74 E-value=4.9 Score=27.72 Aligned_cols=29 Identities=28% Similarity=0.479 Sum_probs=15.5
Q ss_pred cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q psy15201 12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFL 45 (97)
Q Consensus 12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l 45 (97)
-|-..+|+|+--.| .+|+++.++++-..+
T Consensus 83 ~gtqglIFV~Dsa~-----~dr~eeAr~ELh~ii 111 (180)
T KOG0071|consen 83 TGTQGLIFVVDSAD-----RDRIEEARNELHRII 111 (180)
T ss_pred cCCceEEEEEeccc-----hhhHHHHHHHHHHHh
Confidence 35556666653332 245666666665554
No 323
>COG5131 URM1 Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=63.73 E-value=14 Score=23.20 Aligned_cols=10 Identities=30% Similarity=0.498 Sum_probs=8.7
Q ss_pred eEEEEEEcCC
Q psy15201 16 QLGVVINKLD 25 (97)
Q Consensus 16 ~~Iv~INK~D 25 (97)
.+|+.||++|
T Consensus 61 GiI~LINd~D 70 (96)
T COG5131 61 GIICLINDMD 70 (96)
T ss_pred cEEEEEcCcc
Confidence 4789999998
No 324
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=63.39 E-value=15 Score=29.46 Aligned_cols=15 Identities=7% Similarity=0.120 Sum_probs=11.6
Q ss_pred ccCCCeEEEEEEcCCC
Q psy15201 11 VSGVNQLGVVINKLDT 26 (97)
Q Consensus 11 ~lGvk~~Iv~INK~D~ 26 (97)
..| +|+|+++||.|.
T Consensus 178 ~~~-kPfiivlN~~dp 192 (492)
T TIGR02836 178 ELN-KPFIILLNSTHP 192 (492)
T ss_pred hcC-CCEEEEEECcCC
Confidence 344 479999999994
No 325
>KOG2743|consensus
Probab=62.98 E-value=10 Score=29.32 Aligned_cols=23 Identities=22% Similarity=0.543 Sum_probs=17.9
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHH
Q psy15201 19 VVINKLDTVSWSQDRFQEIVTKLGA 43 (97)
Q Consensus 19 v~INK~D~v~~~~~~~~~i~~~l~~ 43 (97)
+++||.|++ +++..+.++++++.
T Consensus 216 II~NKtDli--~~e~~~~l~q~I~~ 238 (391)
T KOG2743|consen 216 IIMNKTDLV--SEEEVKKLRQRIRS 238 (391)
T ss_pred eeecccccc--CHHHHHHHHHHHHH
Confidence 568999999 47777777777754
No 326
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=60.86 E-value=23 Score=28.98 Aligned_cols=35 Identities=26% Similarity=0.274 Sum_probs=22.1
Q ss_pred eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCC
Q psy15201 9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGF 50 (97)
Q Consensus 9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~ 50 (97)
++.+|++ +||+|||-|+= .++..+ .++++.++.++
T Consensus 368 vr~FGvP-vVVAINKFd~D--Te~Ei~----~I~~~c~e~Gv 402 (557)
T PRK13505 368 IRKFGVP-VVVAINKFVTD--TDAEIA----ALKELCEELGV 402 (557)
T ss_pred HHHcCCC-EEEEEeCCCCC--CHHHHH----HHHHHHHHcCC
Confidence 3558884 79999999974 243333 44555555554
No 327
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=60.52 E-value=8.9 Score=31.88 Aligned_cols=34 Identities=29% Similarity=0.434 Sum_probs=20.1
Q ss_pred ccCCCeEEEEEEcCCCCC--------CCHHHHHHHHHHHHHHH
Q psy15201 11 VSGVNQLGVVINKLDTVS--------WSQDRFQEIVTKLGAFL 45 (97)
Q Consensus 11 ~lGvk~~Iv~INK~D~v~--------~~~~~~~~i~~~l~~~l 45 (97)
..+++ .|+++||+|+.. ..++++..+...+...+
T Consensus 136 ~~~~p-~ivviNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 177 (720)
T TIGR00490 136 KENVK-PVLFINKVDRLINELKLTPQELQERFIKIITEVNKLI 177 (720)
T ss_pred HcCCC-EEEEEEChhcccchhcCCHHHHHHHHhhhhHHHHhhh
Confidence 34565 579999999863 11244555445555544
No 328
>KOG0095|consensus
Probab=60.42 E-value=3.2 Score=28.88 Aligned_cols=46 Identities=22% Similarity=0.308 Sum_probs=25.6
Q ss_pred EEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 17 LGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 17 ~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.|++-||+|+.+. .++-+++.+-+.... ++-++..||+..+|+++.
T Consensus 115 kilvgnk~d~~dr-----revp~qigeefs~~q----dmyfletsakea~nve~l 160 (213)
T KOG0095|consen 115 KILVGNKIDLADR-----REVPQQIGEEFSEAQ----DMYFLETSAKEADNVEKL 160 (213)
T ss_pred EEeeccccchhhh-----hhhhHHHHHHHHHhh----hhhhhhhcccchhhHHHH
Confidence 4788999998741 122233322221111 245677788888887543
No 329
>PLN00023 GTP-binding protein; Provisional
Probab=58.48 E-value=10 Score=28.98 Aligned_cols=37 Identities=19% Similarity=0.167 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCCCCCHHHH--HHHHHHHHHHHHHhCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRF--QEIVTKLGAFLKQAGFR 51 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~--~~i~~~l~~~l~~~~~~ 51 (97)
.++|+|.||+|+.+....+. ....++.+.+.++.++-
T Consensus 152 ipIILVGNK~DL~~~~~~r~~s~~~~e~a~~~A~~~g~l 190 (334)
T PLN00023 152 VPYIVIGNKADIAPKEGTRGSSGNLVDAARQWVEKQGLL 190 (334)
T ss_pred CcEEEEEECccccccccccccccccHHHHHHHHHHcCCC
Confidence 46899999999974111011 12345666777766653
No 330
>KOG1487|consensus
Probab=58.09 E-value=5.8 Score=30.07 Aligned_cols=41 Identities=29% Similarity=0.319 Sum_probs=27.1
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-++|.++||+|... - +++.-. + .....+||||.++=|+++.
T Consensus 232 Vp~iyvLNkIdsIS--i-------EELdii-----~--~iphavpISA~~~wn~d~l 272 (358)
T KOG1487|consen 232 VPCIYVLNKIDSIS--I-------EELDII-----Y--TIPHAVPISAHTGWNFDKL 272 (358)
T ss_pred eeeeeeecccceee--e-------ecccee-----e--eccceeecccccccchHHH
Confidence 36899999999763 1 111111 1 2346789999999888765
No 331
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=55.09 E-value=17 Score=29.38 Aligned_cols=26 Identities=27% Similarity=0.259 Sum_probs=16.5
Q ss_pred CeEEEEEEcCCCCCC-CHHHHHHHHHH
Q psy15201 15 NQLGVVINKLDTVSW-SQDRFQEIVTK 40 (97)
Q Consensus 15 k~~Iv~INK~D~v~~-~~~~~~~i~~~ 40 (97)
-|++-.|||||+... .-+.++|+.++
T Consensus 134 iPI~TFiNKlDR~~rdP~ELLdEiE~~ 160 (528)
T COG4108 134 IPIFTFINKLDREGRDPLELLDEIEEE 160 (528)
T ss_pred CceEEEeeccccccCChHHHHHHHHHH
Confidence 378999999998752 23444444333
No 332
>KOG1191|consensus
Probab=54.87 E-value=2 Score=34.66 Aligned_cols=51 Identities=25% Similarity=0.143 Sum_probs=29.1
Q ss_pred CeEEEEEEcCCCCCC-CHHHHHHHHHHHHHHHHHhCCCCCCceEEE-eeeccCCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSW-SQDRFQEIVTKLGAFLKQAGFRDSDIEYVP-CSGLTGENLTTPS 72 (97)
Q Consensus 15 k~~Iv~INK~D~v~~-~~~~~~~i~~~l~~~l~~~~~~~~~~~iip-iSA~~G~ni~~~~ 72 (97)
+++|++.||.|++.. ++ +......+.+..+. ...+++. +|+.+++++...+
T Consensus 390 ~~~i~~~nk~D~~s~~~~-----~~~~~~~~~~~~~~--~~~~i~~~vs~~tkeg~~~L~ 442 (531)
T KOG1191|consen 390 QRIILVANKSDLVSKIPE-----MTKIPVVYPSAEGR--SVFPIVVEVSCTTKEGCERLS 442 (531)
T ss_pred cceEEEechhhccCcccc-----ccCCceeccccccC--cccceEEEeeechhhhHHHHH
Confidence 789999999998851 11 11111112222111 2345554 9999999887654
No 333
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=54.61 E-value=14 Score=26.83 Aligned_cols=15 Identities=33% Similarity=0.215 Sum_probs=12.8
Q ss_pred CeEEEEEEcCCCCCC
Q psy15201 15 NQLGVVINKLDTVSW 29 (97)
Q Consensus 15 k~~Iv~INK~D~v~~ 29 (97)
++.|+|+||.|..+.
T Consensus 193 ~rti~ViTK~D~~~~ 207 (240)
T smart00053 193 ERTIGVITKLDLMDE 207 (240)
T ss_pred CcEEEEEECCCCCCc
Confidence 578999999998863
No 334
>KOG4423|consensus
Probab=53.40 E-value=17 Score=26.21 Aligned_cols=49 Identities=20% Similarity=0.281 Sum_probs=33.3
Q ss_pred eEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 16 QLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 16 ~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
++|+.-||+|.-. +...+.-.++..+-+..+| .....+|++...|+++.
T Consensus 137 ~~vllankCd~e~---~a~~~~~~~~d~f~kengf----~gwtets~Kenkni~Ea 185 (229)
T KOG4423|consen 137 PCVLLANKCDQEK---SAKNEATRQFDNFKKENGF----EGWTETSAKENKNIPEA 185 (229)
T ss_pred hheeccchhccCh---HhhhhhHHHHHHHHhccCc----cceeeeccccccChhHH
Confidence 3778889999754 2333333455666666676 57778899988888664
No 335
>KOG0079|consensus
Probab=52.71 E-value=5 Score=27.94 Aligned_cols=47 Identities=30% Similarity=0.174 Sum_probs=32.0
Q ss_pred eEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 16 QLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 16 ~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
+-|++-||.|..+ |..-..++.+.+..+++ +.++..||....|+..+
T Consensus 114 ~~vLVGNK~d~~~----RrvV~t~dAr~~A~~mg-----ie~FETSaKe~~NvE~m 160 (198)
T KOG0079|consen 114 PKVLVGNKNDDPE----RRVVDTEDARAFALQMG-----IELFETSAKENENVEAM 160 (198)
T ss_pred cceecccCCCCcc----ceeeehHHHHHHHHhcC-----chheehhhhhcccchHH
Confidence 4688889999653 22222355566666665 47888999999988654
No 336
>KOG1707|consensus
Probab=51.94 E-value=7 Score=32.21 Aligned_cols=15 Identities=27% Similarity=0.047 Sum_probs=12.6
Q ss_pred CeEEEEEEcCCCCCC
Q psy15201 15 NQLGVVINKLDTVSW 29 (97)
Q Consensus 15 k~~Iv~INK~D~v~~ 29 (97)
.|+|+|-||.|..++
T Consensus 116 ~PVILvGNK~d~~~~ 130 (625)
T KOG1707|consen 116 TPVILVGNKSDNGDN 130 (625)
T ss_pred CCEEEEeeccCCccc
Confidence 469999999998863
No 337
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=51.43 E-value=20 Score=25.69 Aligned_cols=16 Identities=19% Similarity=0.067 Sum_probs=14.0
Q ss_pred CceEEEeeeccCCCCC
Q psy15201 54 DIEYVPCSGLTGENLT 69 (97)
Q Consensus 54 ~~~iipiSA~~G~ni~ 69 (97)
-.|+++.||.++.|+.
T Consensus 240 ~~pv~~gSa~~~~G~~ 255 (268)
T cd04170 240 LVPVLCGSALTNIGVR 255 (268)
T ss_pred EEEEEEeeCCCCcCHH
Confidence 4799999999999884
No 338
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=49.97 E-value=21 Score=26.81 Aligned_cols=11 Identities=18% Similarity=0.434 Sum_probs=9.6
Q ss_pred EEEEEcCCCCC
Q psy15201 18 GVVINKLDTVS 28 (97)
Q Consensus 18 Iv~INK~D~v~ 28 (97)
++++||+|+++
T Consensus 154 ~IvlnK~Dl~~ 164 (318)
T PRK11537 154 RILLTKTDVAG 164 (318)
T ss_pred EEEEeccccCC
Confidence 67899999995
No 339
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=47.36 E-value=21 Score=27.74 Aligned_cols=50 Identities=24% Similarity=0.346 Sum_probs=27.4
Q ss_pred cCCCeEEEEEEcCCC-C---------CCCHH-HHHHHHHHHHHHHHHhCCCCCCceEEEeeecc
Q psy15201 12 SGVNQLGVVINKLDT-V---------SWSQD-RFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLT 64 (97)
Q Consensus 12 lGvk~~Iv~INK~D~-v---------~~~~~-~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~ 64 (97)
+| +++.+|-||+|. + .++++ .+++|++...+.|+..+. ...+++-||.+.
T Consensus 140 ~g-K~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv--~~P~VFLVS~~d 200 (376)
T PF05049_consen 140 MG-KKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAGV--SEPQVFLVSSFD 200 (376)
T ss_dssp TT--EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT---SS--EEEB-TTT
T ss_pred cC-CcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcCC--CcCceEEEeCCC
Confidence 44 468999999994 1 12332 356777777777776665 346888888764
No 340
>KOG1673|consensus
Probab=45.57 E-value=39 Score=23.74 Aligned_cols=50 Identities=16% Similarity=0.118 Sum_probs=37.0
Q ss_pred EEEEEEcCCC-CCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 17 LGVVINKLDT-VSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 17 ~Iv~INK~D~-v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-|++-+|-|. ++.+.+.-+.|..+.+.+.+.++ .+.+.+|+-+..|+.+.
T Consensus 127 PilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mn-----AsL~F~Sts~sINv~KI 177 (205)
T KOG1673|consen 127 PILVGTKYDLFIDLPPELQETISRQARKYAKVMN-----ASLFFCSTSHSINVQKI 177 (205)
T ss_pred eEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhC-----CcEEEeeccccccHHHH
Confidence 4778899883 34456666777777778877665 68899999999998654
No 341
>KOG0447|consensus
Probab=44.40 E-value=26 Score=29.39 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=18.6
Q ss_pred CeEEEEEEcCCCCC---CCHHHHHHHHHH
Q psy15201 15 NQLGVVINKLDTVS---WSQDRFQEIVTK 40 (97)
Q Consensus 15 k~~Iv~INK~D~v~---~~~~~~~~i~~~ 40 (97)
++-|+|++|+|+.+ .+.+|+..|.+.
T Consensus 480 rRTIfVLTKVDlAEknlA~PdRI~kIleG 508 (980)
T KOG0447|consen 480 RRTIFVLTKVDLAEKNVASPSRIQQIIEG 508 (980)
T ss_pred CeeEEEEeecchhhhccCCHHHHHHHHhc
Confidence 35799999999875 256677666543
No 342
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=44.24 E-value=36 Score=22.97 Aligned_cols=15 Identities=27% Similarity=0.140 Sum_probs=12.9
Q ss_pred CeEEEEEEcCCCCCC
Q psy15201 15 NQLGVVINKLDTVSW 29 (97)
Q Consensus 15 k~~Iv~INK~D~v~~ 29 (97)
.++|++.||+|+...
T Consensus 112 ~~iilv~nK~Dl~~~ 126 (219)
T COG1100 112 VPILLVGNKIDLFDE 126 (219)
T ss_pred ceEEEEecccccccc
Confidence 579999999999863
No 343
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=43.71 E-value=65 Score=20.82 Aligned_cols=60 Identities=15% Similarity=0.186 Sum_probs=41.7
Q ss_pred eeccCCCeEEEEEEcCCCCCC--CHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCC
Q psy15201 9 SAVSGVNQLGVVINKLDTVSW--SQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENL 68 (97)
Q Consensus 9 ~~~lGvk~~Iv~INK~D~v~~--~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni 68 (97)
|..-|...++|+-=.-+-+-+ ...+.++..+.+++.|+..|+.++.+.+..+|+-.+..+
T Consensus 48 Af~~GADGV~V~gC~~g~Ch~~~Gn~~a~~Rv~~~k~~L~~~Gi~~eRv~~~~~~~~~~~~f 109 (124)
T PF02662_consen 48 AFEKGADGVLVAGCHPGDCHYREGNYRAEKRVERLKKLLEELGIEPERVRLYWISAPEGKRF 109 (124)
T ss_pred HHHcCCCEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhHeEEEEeCcccHHHH
Confidence 344566666665444444432 335667777888889999999888899999998776654
No 344
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=43.58 E-value=21 Score=26.35 Aligned_cols=51 Identities=16% Similarity=0.182 Sum_probs=29.3
Q ss_pred ccCCCeEEEEEEcCC--CCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 11 VSGVNQLGVVINKLD--TVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 11 ~lGvk~~Iv~INK~D--~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.+--||+++++|+.| ..+ +... ..++....+. ...+++|+||.....+.+.
T Consensus 192 llt~KP~i~v~N~~e~d~~~-~~~~----~~~~~~~~~~-----~~~~~i~~sa~~E~eL~~l 244 (274)
T cd01900 192 LLTAKPVLYVANVSEDDLAN-GNNK----VLKVREIAAK-----EGAEVIPISAKIEAELAEL 244 (274)
T ss_pred HhhcCCceeecccCHHHhcc-ccHH----HHHHHHHHhc-----CCCeEEEeeHHHHHHHHcC
Confidence 355689999999988 221 1111 1222222221 1368999999776655443
No 345
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=43.51 E-value=15 Score=27.17 Aligned_cols=17 Identities=35% Similarity=0.561 Sum_probs=14.7
Q ss_pred eccCCCeEEEEEEcCCC
Q psy15201 10 AVSGVNQLGVVINKLDT 26 (97)
Q Consensus 10 ~~lGvk~~Iv~INK~D~ 26 (97)
.-+|++++-+++||+|-
T Consensus 181 ~elg~k~i~~V~NKv~e 197 (255)
T COG3640 181 EELGIKRIFVVLNKVDE 197 (255)
T ss_pred HHhCCceEEEEEeeccc
Confidence 44889999999999984
No 346
>KOG2800|consensus
Probab=41.63 E-value=9.4 Score=29.39 Aligned_cols=10 Identities=50% Similarity=1.408 Sum_probs=9.0
Q ss_pred CcccCCCcee
Q psy15201 1 MFWADGGKSA 10 (97)
Q Consensus 1 ~~~~~~~~~~ 10 (97)
|+|.||||--
T Consensus 297 mywlDgGh~g 306 (389)
T KOG2800|consen 297 MYWLDGGHNG 306 (389)
T ss_pred eeEeecccCC
Confidence 8999999976
No 347
>KOG0080|consensus
Probab=40.22 E-value=16 Score=25.74 Aligned_cols=44 Identities=25% Similarity=0.280 Sum_probs=26.8
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 18 GVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 18 Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
++|-||+|.-. +.... +++-..+.+... .-||.+||.+.+|+..
T Consensus 121 mlVgNKiDkes--~R~V~--reEG~kfAr~h~-----~LFiE~SAkt~~~V~~ 164 (209)
T KOG0080|consen 121 MLVGNKIDKES--ERVVD--REEGLKFARKHR-----CLFIECSAKTRENVQC 164 (209)
T ss_pred hhhcccccchh--ccccc--HHHHHHHHHhhC-----cEEEEcchhhhccHHH
Confidence 56779999541 21111 333344444433 6889999999998743
No 348
>KOG0090|consensus
Probab=39.84 E-value=33 Score=25.07 Aligned_cols=15 Identities=20% Similarity=0.160 Sum_probs=12.3
Q ss_pred CCeEEEEEEcCCCCC
Q psy15201 14 VNQLGVVINKLDTVS 28 (97)
Q Consensus 14 vk~~Iv~INK~D~v~ 28 (97)
..++.+|.||-|+..
T Consensus 145 ~~~vLIaCNKqDl~t 159 (238)
T KOG0090|consen 145 KPPVLIACNKQDLFT 159 (238)
T ss_pred CCCEEEEecchhhhh
Confidence 457999999999774
No 349
>KOG2486|consensus
Probab=39.33 E-value=6.8 Score=29.70 Aligned_cols=59 Identities=15% Similarity=0.143 Sum_probs=32.4
Q ss_pred cCCCeEEEEEEcCCCCCCC----HHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCC
Q psy15201 12 SGVNQLGVVINKLDTVSWS----QDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQ 73 (97)
Q Consensus 12 lGvk~~Iv~INK~D~v~~~----~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~ 73 (97)
.+| ++.++.||||....- ......++..++.+.+.. | .-..|.|.+|+.++.|+++.--
T Consensus 247 ~~V-P~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~-f-~~~~Pw~~~Ssvt~~Grd~Ll~ 309 (320)
T KOG2486|consen 247 NNV-PMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGV-F-LVDLPWIYVSSVTSLGRDLLLL 309 (320)
T ss_pred cCC-CeEEeeehhhhhhhccccccCccccceeehhhccccc-e-eccCCceeeecccccCceeeee
Confidence 344 578999999976310 111111111122222211 1 2235777899999999988754
No 350
>PF08712 Nfu_N: Scaffold protein Nfu/NifU N terminal; InterPro: IPR014824 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This domain is found at the N terminus of NifU (from NIF system) and NifU related proteins, and in the human Nfu protein. Both of these proteins are thought to be involved in the assembly of iron-sulphur clusters, functioning as scaffolds [, ]. ; GO: 0005506 iron ion binding; PDB: 2FFM_A 1PQX_A 2K1H_A.
Probab=37.70 E-value=36 Score=20.73 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=14.6
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q psy15201 18 GVVINKLDTVSWSQDRFQEIVTKLGAFL 45 (97)
Q Consensus 18 Iv~INK~D~v~~~~~~~~~i~~~l~~~l 45 (97)
.|.|+|-+-++| ++...++.+.+.+++
T Consensus 58 fItVtK~~~~~W-~~l~~~I~~~I~~~l 84 (87)
T PF08712_consen 58 FITVTKNPDADW-EDLKPEIREVIMEFL 84 (87)
T ss_dssp EEEEEE-TTS-H-HHHHHHHHHHTH---
T ss_pred EEEEeeCCCCCH-HHHHHHHHHHHhhhc
Confidence 578999999988 444445555555544
No 351
>PF04317 DUF463: YcjX-like family, DUF463; InterPro: IPR007413 Some members of this family are thought to possess an ATP-binding domain towards their N terminus.
Probab=37.62 E-value=74 Score=25.43 Aligned_cols=55 Identities=13% Similarity=0.242 Sum_probs=33.5
Q ss_pred cCCCeEEEEEEcCCCCC-CCHHHHHHHHHHH-HHHHHHhCCCCCCceEEEeeeccCC
Q psy15201 12 SGVNQLGVVINKLDTVS-WSQDRFQEIVTKL-GAFLKQAGFRDSDIEYVPCSGLTGE 66 (97)
Q Consensus 12 lGvk~~Iv~INK~D~v~-~~~~~~~~i~~~l-~~~l~~~~~~~~~~~iipiSA~~G~ 66 (97)
--|.++.+|-||.|-+. ....++..+.+++ ++-.+...|..-.+..+.++|..-.
T Consensus 304 prIdkvlFAATKADHv~~~qh~~L~~LL~~lv~~a~~~a~f~g~~~~~~aiAairaT 360 (443)
T PF04317_consen 304 PRIDKVLFAATKADHVTPDQHPNLESLLRQLVQEARQRARFEGIETECMAIAAIRAT 360 (443)
T ss_pred cchhhhheeechhccCCHhHHHHHHHHHHHHHHHHHHhhcccCCceeeeeeeeeeec
Confidence 35788999999999775 2334555444444 2233344454445777777776443
No 352
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=34.65 E-value=33 Score=23.44 Aligned_cols=27 Identities=22% Similarity=0.236 Sum_probs=19.6
Q ss_pred HHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 40 KLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 40 ~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
++...++++++ +++.+|+.+++++.+.
T Consensus 3 ~~~~~y~~~gy-----~v~~~S~~~~~g~~~l 29 (161)
T PF03193_consen 3 ELLEQYEKLGY-----PVFFISAKTGEGIEEL 29 (161)
T ss_dssp HHHHHHHHTTS-----EEEE-BTTTTTTHHHH
T ss_pred HHHHHHHHcCC-----cEEEEeCCCCcCHHHH
Confidence 34455667775 8999999999998765
No 353
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=34.12 E-value=74 Score=21.44 Aligned_cols=35 Identities=17% Similarity=0.273 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCCCC-CH-HHHHHHHHHHHHHHHHhC
Q psy15201 15 NQLGVVINKLDTVSW-SQ-DRFQEIVTKLGAFLKQAG 49 (97)
Q Consensus 15 k~~Iv~INK~D~v~~-~~-~~~~~i~~~l~~~l~~~~ 49 (97)
++.|+++|+.|.... +. +.+......++.+++.++
T Consensus 117 ~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~ 153 (196)
T cd01852 117 DHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCG 153 (196)
T ss_pred hcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhC
Confidence 688999999997642 11 222223356677777654
No 354
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=33.40 E-value=91 Score=25.22 Aligned_cols=38 Identities=18% Similarity=0.357 Sum_probs=22.8
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeec
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGL 63 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~ 63 (97)
||+|+++|-.+- ++++ ..++.+++++-+ ++|++|++..
T Consensus 181 KPFvillNs~~P--~s~e-t~~L~~eL~ekY--------~vpVlpvnc~ 218 (492)
T PF09547_consen 181 KPFVILLNSTKP--YSEE-TQELAEELEEKY--------DVPVLPVNCE 218 (492)
T ss_pred CCEEEEEeCCCC--CCHH-HHHHHHHHHHHh--------CCcEEEeehH
Confidence 689999997763 3333 333344444322 3788888754
No 355
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=32.74 E-value=71 Score=23.10 Aligned_cols=13 Identities=31% Similarity=0.325 Sum_probs=10.5
Q ss_pred CeEEEEEEcCCCC
Q psy15201 15 NQLGVVINKLDTV 27 (97)
Q Consensus 15 k~~Iv~INK~D~v 27 (97)
.+.++++||.|..
T Consensus 189 ~~~i~~lNkaD~~ 201 (232)
T TIGR03172 189 ARRIWLLNKVDTA 201 (232)
T ss_pred ccEEEEEeCCCCH
Confidence 3589999999964
No 356
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=32.04 E-value=93 Score=22.90 Aligned_cols=35 Identities=20% Similarity=0.234 Sum_probs=26.8
Q ss_pred CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhC
Q psy15201 13 GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAG 49 (97)
Q Consensus 13 Gvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~ 49 (97)
....+|-+|.|.|+. +.+.+...++.+..-++..+
T Consensus 141 ~~vNvIPvIaKaD~l--t~~el~~~k~~i~~~l~~~~ 175 (281)
T PF00735_consen 141 KRVNVIPVIAKADTL--TPEELQAFKQRIREDLEENN 175 (281)
T ss_dssp TTSEEEEEESTGGGS---HHHHHHHHHHHHHHHHHTT
T ss_pred ccccEEeEEeccccc--CHHHHHHHHHHHHHHHHHcC
Confidence 345789999999987 47777788888887776655
No 357
>KOG3886|consensus
Probab=31.92 E-value=71 Score=23.90 Aligned_cols=46 Identities=17% Similarity=0.175 Sum_probs=25.0
Q ss_pred CeEEEEEEcCCCCCCC--HHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccC
Q psy15201 15 NQLGVVINKLDTVSWS--QDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTG 65 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~--~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G 65 (97)
.++-+.+.|||++.-+ +..+.+-++.++.+-+. -....+|.|-+..
T Consensus 117 AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~-----~~~~~f~TsiwDe 164 (295)
T KOG3886|consen 117 AKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRP-----LECKCFPTSIWDE 164 (295)
T ss_pred ceEEEEEeechhcccchHHHHHHHHHHHHHHhccc-----ccccccccchhhH
Confidence 3567789999998522 22333333333332221 1367777776653
No 358
>KOG0410|consensus
Probab=29.20 E-value=23 Score=27.67 Aligned_cols=15 Identities=40% Similarity=0.408 Sum_probs=12.7
Q ss_pred EEEeeeccCCCCCCC
Q psy15201 57 YVPCSGLTGENLTTP 71 (97)
Q Consensus 57 iipiSA~~G~ni~~~ 71 (97)
.++|||++|+++.+.
T Consensus 318 ~v~isaltgdgl~el 332 (410)
T KOG0410|consen 318 DVGISALTGDGLEEL 332 (410)
T ss_pred ccccccccCccHHHH
Confidence 689999999998654
No 359
>KOG0077|consensus
Probab=28.34 E-value=1.9e+02 Score=20.48 Aligned_cols=15 Identities=20% Similarity=0.131 Sum_probs=12.0
Q ss_pred CCeEEEEEEcCCCCC
Q psy15201 14 VNQLGVVINKLDTVS 28 (97)
Q Consensus 14 vk~~Iv~INK~D~v~ 28 (97)
--++++..||+|...
T Consensus 121 ~vp~lilgnKId~p~ 135 (193)
T KOG0077|consen 121 TVPFLILGNKIDIPY 135 (193)
T ss_pred cCcceeecccccCCC
Confidence 346788899999885
No 360
>PF10561 UPF0565: Uncharacterised protein family UPF0565; InterPro: IPR018881 This family of proteins has no known function.
Probab=27.55 E-value=23 Score=26.77 Aligned_cols=14 Identities=43% Similarity=0.990 Sum_probs=10.9
Q ss_pred CcccCCCceeccCC
Q psy15201 1 MFWADGGKSAVSGV 14 (97)
Q Consensus 1 ~~~~~~~~~~~lGv 14 (97)
|+|-||||...-+.
T Consensus 237 ~~wLD~Gh~g~~~~ 250 (303)
T PF10561_consen 237 MYWLDGGHNGGSNT 250 (303)
T ss_pred EEEeccCCCCCCCc
Confidence 79999999765543
No 361
>KOG0468|consensus
Probab=27.35 E-value=24 Score=30.14 Aligned_cols=15 Identities=40% Similarity=0.459 Sum_probs=12.0
Q ss_pred CCCeEEEEEEcCCCC
Q psy15201 13 GVNQLGVVINKLDTV 27 (97)
Q Consensus 13 Gvk~~Iv~INK~D~v 27 (97)
.-.++++||||+|++
T Consensus 248 ~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 248 NRLPIVVVINKVDRL 262 (971)
T ss_pred ccCcEEEEEehhHHH
Confidence 345789999999965
No 362
>KOG1491|consensus
Probab=26.73 E-value=1.3e+02 Score=23.60 Aligned_cols=56 Identities=9% Similarity=0.045 Sum_probs=31.2
Q ss_pred ceeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCC
Q psy15201 8 KSAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENL 68 (97)
Q Consensus 8 ~~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni 68 (97)
|..+|-.+++|.++|+.|.- | ...-+.-...+....+.... ...++|.|+.-...+
T Consensus 218 ~~~lLt~kP~Vyl~N~se~d-y-~r~knk~l~~i~~w~~~~~~---g~~~i~fs~~~e~ql 273 (391)
T KOG1491|consen 218 KLFLLTAKPTVYLLNLSEHD-Y-ARKKNKKLPKIKEWVDEVSP---GDVVIVFSAAFESQL 273 (391)
T ss_pred HhhhhhcCceEEEEecCcch-h-hhHHHHHHhhhhhhhhccCC---CCeEEEehHHHHHHh
Confidence 34567889999999999863 2 22222222223333332222 357788887654443
No 363
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=26.60 E-value=73 Score=19.01 Aligned_cols=16 Identities=31% Similarity=0.586 Sum_probs=10.0
Q ss_pred EEcCCCCCCCHHHHHHHH
Q psy15201 21 INKLDTVSWSQDRFQEIV 38 (97)
Q Consensus 21 INK~D~v~~~~~~~~~i~ 38 (97)
++|+|+|. .+.|+..+
T Consensus 41 l~kldlVt--REEFd~q~ 56 (79)
T PF04380_consen 41 LSKLDLVT--REEFDAQK 56 (79)
T ss_pred HHHCCCCc--HHHHHHHH
Confidence 57899984 44444443
No 364
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=26.40 E-value=1.1e+02 Score=21.09 Aligned_cols=37 Identities=16% Similarity=0.152 Sum_probs=20.4
Q ss_pred eccCCCeEEEEEEcCCCCCC-CHHHHHHHHHHHHHHHH
Q psy15201 10 AVSGVNQLGVVINKLDTVSW-SQDRFQEIVTKLGAFLK 46 (97)
Q Consensus 10 ~~lGvk~~Iv~INK~D~v~~-~~~~~~~i~~~l~~~l~ 46 (97)
+..|+....+++|+.....- ..+++....+.-+.++.
T Consensus 166 ~~~~~~~~glVlN~~~~~~~~~~~~~~~~~~~q~~~l~ 203 (217)
T cd02035 166 ALYGIPVDAVVVNRVLPAEVDDDPFLAARRQIQQKYLA 203 (217)
T ss_pred HHCCCCCCEEEEeCCcCcccCCCHHHHHHHHHHHHHHH
Confidence 45677777788898875421 22344444444444444
No 365
>KOG0096|consensus
Probab=25.78 E-value=25 Score=25.28 Aligned_cols=46 Identities=20% Similarity=0.313 Sum_probs=29.7
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCC-CCCceEEEeeeccCCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFR-DSDIEYVPCSGLTGENLTTPS 72 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~-~~~~~iipiSA~~G~ni~~~~ 72 (97)
-++|++-||.|.-+ .+ ++. +.+.|. ..+...+.+||...-|..+|.
T Consensus 115 iPiv~cGNKvDi~~-r~-----~k~------k~v~~~rkknl~y~~iSaksn~NfekPF 161 (216)
T KOG0096|consen 115 IPIVLCGNKVDIKA-RK-----VKA------KPVSFHRKKNLQYYEISAKSNYNFERPF 161 (216)
T ss_pred CCeeeeccceeccc-cc-----ccc------ccceeeecccceeEEeecccccccccch
Confidence 37999999999653 11 111 112222 245788999999988887763
No 366
>smart00632 Aamy_C Aamy_C domain.
Probab=24.65 E-value=93 Score=18.22 Aligned_cols=24 Identities=33% Similarity=0.634 Sum_probs=14.8
Q ss_pred cccCCCc-eecc-CCCeEEEEEEcCCC
Q psy15201 2 FWADGGK-SAVS-GVNQLGVVINKLDT 26 (97)
Q Consensus 2 ~~~~~~~-~~~l-Gvk~~Iv~INK~D~ 26 (97)
.|.++.+ ...- | ...+|+|||-+.
T Consensus 3 ~~~~~~~~laF~Rg-~~g~VaiN~~~~ 28 (81)
T smart00632 3 WWDNGDNQIAFERG-SKGFVAINRSDS 28 (81)
T ss_pred eEECCCeEEEEECC-CeEEEEEECCCC
Confidence 3666652 2111 4 678999999874
No 367
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=24.21 E-value=1e+02 Score=21.86 Aligned_cols=16 Identities=19% Similarity=0.129 Sum_probs=12.9
Q ss_pred CceEEEeeeccCCCCC
Q psy15201 54 DIEYVPCSGLTGENLT 69 (97)
Q Consensus 54 ~~~iipiSA~~G~ni~ 69 (97)
-+|++..||.++.|+.
T Consensus 209 ~~Pv~~gsa~~~~Gv~ 224 (237)
T cd04168 209 VFPVYHGSALKGIGIE 224 (237)
T ss_pred eEEEEEccccCCcCHH
Confidence 3688888999999874
No 368
>PHA02754 hypothetical protein; Provisional
Probab=23.68 E-value=1e+02 Score=17.85 Aligned_cols=20 Identities=30% Similarity=0.587 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHhCC
Q psy15201 31 QDRFQEIVTKLGAFLKQAGF 50 (97)
Q Consensus 31 ~~~~~~i~~~l~~~l~~~~~ 50 (97)
+.+|++.+.+++..+...|.
T Consensus 13 eK~Fke~MRelkD~LSe~Gi 32 (67)
T PHA02754 13 EKDFKEAMRELKDILSEAGI 32 (67)
T ss_pred HhHHHHHHHHHHHHHhhCce
Confidence 45788888888888876663
No 369
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=23.61 E-value=88 Score=22.77 Aligned_cols=17 Identities=6% Similarity=0.063 Sum_probs=13.8
Q ss_pred CceEEEeeeccCCCCCC
Q psy15201 54 DIEYVPCSGLTGENLTT 70 (97)
Q Consensus 54 ~~~iipiSA~~G~ni~~ 70 (97)
-+|++..||.++.|+..
T Consensus 242 ~~PV~~gSa~~~~Gi~~ 258 (270)
T cd01886 242 IVPVLCGSAFKNKGVQP 258 (270)
T ss_pred EEEEEeCcCCCCcCHHH
Confidence 37889999999998843
No 370
>PF09582 AnfO_nitrog: Iron only nitrogenase protein AnfO (AnfO_nitrog); InterPro: IPR014287 Proteins in this entry include Anf1 from Rhodobacter capsulatus (Rhodopseudomonas capsulata) and AnfO from Azotobacter vinelandii. They are found exclusively in species which contain the iron-only nitrogenase, and are encoded immediately downstream of the structural genes for the nitrogenase enzyme in these species.
Probab=23.14 E-value=1.5e+02 Score=20.97 Aligned_cols=86 Identities=16% Similarity=0.207 Sum_probs=55.0
Q ss_pred cCCCceeccCCCeEEEEEEcCCCC-------C---CCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCC
Q psy15201 4 ADGGKSAVSGVNQLGVVINKLDTV-------S---WSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQ 73 (97)
Q Consensus 4 ~~~~~~~~lGvk~~Iv~INK~D~v-------~---~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~ 73 (97)
-|-|....+.-+..|.+..|-+-. + .....+.++++.+..++..++ ++.++-.+..+|.-......
T Consensus 8 n~~g~~~s~~e~G~v~vy~~~~g~W~~~~e~~f~~~~~~~l~~iR~~~~~li~~L~----dCkifV~~~v~Gi~y~~Le~ 83 (202)
T PF09582_consen 8 NEEGETASFYEPGFVRVYEKDDGKWKVIREIPFELCDAKGLAEIRQKISELIEFLG----DCKIFVAKSVSGIPYSLLEK 83 (202)
T ss_pred CCCCCCccCCCCcEEEEEECCCCceEEeEEEEeccCCCCCHHHHHHHHHHHHHHhC----CcEEEEEccccCccHHHHHH
Confidence 355677777778888888886521 0 122457788888888887665 47888788888875444322
Q ss_pred CCCCCCccccCchHHHhcccc
Q psy15201 74 VPALTSWYSGPCLLDVIGLSG 94 (97)
Q Consensus 74 ~~~~~~W~~g~tlle~ld~~~ 94 (97)
. ++.-|----...+.||++.
T Consensus 84 ~-g~~iWe~~G~p~e~Ld~V~ 103 (202)
T PF09582_consen 84 A-GFSIWESEGNPLEFLDYVA 103 (202)
T ss_pred C-CcEEEEECCCHHHHHHHHH
Confidence 1 3355664445567777763
No 371
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=22.76 E-value=22 Score=18.44 Aligned_cols=9 Identities=22% Similarity=0.944 Sum_probs=6.3
Q ss_pred CcccCCCce
Q psy15201 1 MFWADGGKS 9 (97)
Q Consensus 1 ~~~~~~~~~ 9 (97)
|||+|.+.-
T Consensus 3 iYWtD~~~~ 11 (42)
T PF00058_consen 3 IYWTDWSQD 11 (42)
T ss_dssp EEEEETTTT
T ss_pred EEEEECCCC
Confidence 588887653
No 372
>PF13134 DUF3948: Protein of unknown function (DUF3948)
Probab=22.65 E-value=49 Score=16.95 Aligned_cols=12 Identities=17% Similarity=0.271 Sum_probs=9.5
Q ss_pred EEEEEEcCCCCC
Q psy15201 17 LGVVINKLDTVS 28 (97)
Q Consensus 17 ~Iv~INK~D~v~ 28 (97)
-++-+||||...
T Consensus 5 qvlq~tK~D~lg 16 (35)
T PF13134_consen 5 QVLQVTKMDFLG 16 (35)
T ss_pred ceEEEechhhhh
Confidence 367789999875
No 373
>KOG4230|consensus
Probab=21.00 E-value=1.4e+02 Score=25.40 Aligned_cols=30 Identities=27% Similarity=0.309 Sum_probs=20.9
Q ss_pred ceeccCCCeEEEEEEcCCCCCCCHHHHHHHHHH
Q psy15201 8 KSAVSGVNQLGVVINKLDTVSWSQDRFQEIVTK 40 (97)
Q Consensus 8 ~~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~ 40 (97)
.++.+|+ +++|+|||-.+- ++..++.|++.
T Consensus 745 n~~~fgi-pvvvain~f~td--s~~ei~~ir~~ 774 (935)
T KOG4230|consen 745 NIKKFGI-PVVVAINKFKTD--SEKEIEAIREA 774 (935)
T ss_pred hHHhcCC-CEEEEeccccCC--CHHHHHHHHHH
Confidence 3677898 589999998653 56666655544
Done!