Query psy15201
Match_columns 97
No_of_seqs 100 out of 1066
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 23:17:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15201.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15201hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j2k_7 ERF3, eukaryotic polype 99.6 2.6E-16 9E-21 119.7 7.5 84 9-95 150-236 (439)
2 3izq_1 HBS1P, elongation facto 99.6 2.4E-15 8.2E-20 118.8 9.9 85 9-93 300-384 (611)
3 3p26_A Elongation factor 1 alp 99.6 5E-16 1.7E-20 119.1 4.2 85 9-93 166-250 (483)
4 1zun_B Sulfate adenylate trans 99.6 8.5E-15 2.9E-19 110.9 8.7 84 9-95 152-235 (434)
5 1jny_A EF-1-alpha, elongation 99.6 9.1E-15 3.1E-19 110.8 8.4 83 9-94 139-223 (435)
6 1f60_A Elongation factor EEF1A 99.6 6.2E-15 2.1E-19 112.7 7.4 83 9-94 140-234 (458)
7 3mca_A HBS1, elongation factor 99.6 3.9E-15 1.3E-19 117.2 6.3 84 9-93 310-394 (592)
8 1r5b_A Eukaryotic peptide chai 99.6 7.9E-15 2.7E-19 112.3 7.6 86 9-95 176-265 (467)
9 1d2e_A Elongation factor TU (E 99.0 1.3E-10 4.5E-15 87.0 4.4 76 9-92 114-191 (397)
10 2c78_A Elongation factor TU-A; 99.0 1.1E-10 3.9E-15 87.4 0.9 83 9-92 123-208 (405)
11 3avx_A Elongation factor TS, e 98.7 9.8E-09 3.4E-13 86.5 4.8 75 9-92 407-482 (1289)
12 3sjy_A Translation initiation 98.5 6.4E-08 2.2E-12 72.4 4.2 58 9-70 124-181 (403)
13 1wb1_A Translation elongation 98.4 1.2E-07 4.2E-12 72.8 3.5 57 9-70 121-178 (482)
14 1kk1_A EIF2gamma; initiation o 98.4 2.3E-07 7.8E-12 69.5 4.2 57 10-70 133-189 (410)
15 1s0u_A EIF-2-gamma, translatio 98.3 1.7E-07 5.8E-12 70.2 1.9 57 10-70 131-187 (408)
16 4dcu_A GTP-binding protein ENG 98.2 6.6E-07 2.3E-11 67.8 3.6 53 15-71 307-359 (456)
17 2elf_A Protein translation elo 98.2 1.2E-06 4E-11 65.3 3.6 57 9-70 107-169 (370)
18 2hjg_A GTP-binding protein ENG 98.1 2.4E-06 8.1E-11 64.5 4.0 53 15-71 287-339 (436)
19 3pqc_A Probable GTP-binding pr 98.0 2.4E-06 8.2E-11 55.9 3.0 50 15-70 134-183 (195)
20 4dhe_A Probable GTP-binding pr 98.0 6.7E-06 2.3E-10 55.4 4.8 54 15-71 145-201 (223)
21 1svi_A GTP-binding protein YSX 97.7 1.4E-05 4.9E-10 52.5 2.6 50 15-70 135-184 (195)
22 3p32_A Probable GTPase RV1496/ 97.7 2.9E-05 9.8E-10 57.1 4.4 54 16-71 219-274 (355)
23 4gzl_A RAS-related C3 botulinu 97.7 3E-05 1E-09 52.0 3.4 52 14-70 134-194 (204)
24 1mh1_A RAC1; GTP-binding, GTPa 97.7 3.1E-05 1.1E-09 50.1 3.4 53 14-71 109-170 (186)
25 1mky_A Probable GTP-binding pr 97.6 1.7E-05 5.8E-10 59.8 2.0 53 15-71 293-345 (439)
26 2gco_A H9, RHO-related GTP-bin 97.6 8.5E-05 2.9E-09 49.5 5.2 52 14-70 129-189 (201)
27 2atx_A Small GTP binding prote 97.6 0.00011 3.7E-09 48.3 5.4 52 14-70 122-182 (194)
28 3h2y_A GTPase family protein; 97.6 4E-05 1.4E-09 57.0 3.5 57 12-71 94-150 (368)
29 3ec1_A YQEH GTPase; atnos1, at 97.6 4.8E-05 1.6E-09 56.5 3.8 58 11-71 95-152 (369)
30 2qu8_A Putative nucleolar GTP- 97.6 2.5E-05 8.6E-10 53.2 2.0 54 14-71 142-195 (228)
31 1upt_A ARL1, ADP-ribosylation 97.5 7.2E-05 2.5E-09 47.7 3.7 52 14-71 108-159 (171)
32 1moz_A ARL1, ADP-ribosylation 97.5 5.7E-05 2E-09 48.9 3.3 52 13-70 118-169 (183)
33 2lkc_A Translation initiation 97.5 9.4E-06 3.2E-10 52.4 -0.8 50 15-71 108-161 (178)
34 3t1o_A Gliding protein MGLA; G 97.5 3.8E-05 1.3E-09 50.1 1.9 49 13-71 134-182 (198)
35 2j1l_A RHO-related GTP-binding 97.5 0.00013 4.5E-09 49.1 4.7 53 14-71 138-199 (214)
36 3bwd_D RAC-like GTP-binding pr 97.5 5.5E-05 1.9E-09 48.9 2.6 52 14-70 112-170 (182)
37 2fv8_A H6, RHO-related GTP-bin 97.5 0.00014 4.9E-09 48.6 4.6 53 14-71 129-190 (207)
38 2nzj_A GTP-binding protein REM 97.5 5.1E-05 1.7E-09 48.7 2.3 49 14-71 111-159 (175)
39 1zj6_A ADP-ribosylation factor 97.5 9.4E-05 3.2E-09 48.4 3.5 53 13-71 116-168 (187)
40 2yv5_A YJEQ protein; hydrolase 97.5 0.00014 4.9E-09 52.5 4.7 49 15-71 111-159 (302)
41 1u8z_A RAS-related protein RAL 97.5 3.1E-05 1.1E-09 49.0 1.1 48 14-70 109-156 (168)
42 1g7s_A Translation initiation 97.4 0.00013 4.5E-09 57.5 4.8 62 9-71 118-208 (594)
43 3q72_A GTP-binding protein RAD 97.4 4.8E-05 1.6E-09 48.5 1.9 47 15-70 107-153 (166)
44 2h57_A ADP-ribosylation factor 97.4 0.0001 3.5E-09 48.4 3.4 52 14-71 126-177 (190)
45 3reg_A RHO-like small GTPase; 97.4 2.6E-05 8.9E-10 51.5 0.4 52 14-71 127-178 (194)
46 1fzq_A ADP-ribosylation factor 97.4 9.4E-05 3.2E-09 48.6 3.1 52 14-71 117-168 (181)
47 2cxx_A Probable GTP-binding pr 97.4 0.00014 4.7E-09 47.3 3.8 50 15-71 123-174 (190)
48 4bas_A ADP-ribosylation factor 97.4 0.00011 3.7E-09 48.2 3.3 53 14-71 127-179 (199)
49 2x77_A ADP-ribosylation factor 97.4 0.00011 3.6E-09 48.2 3.2 52 14-71 123-174 (189)
50 1ksh_A ARF-like protein 2; sma 97.4 0.00011 3.7E-09 47.9 3.2 52 14-71 119-170 (186)
51 2h17_A ADP-ribosylation factor 97.4 0.0001 3.4E-09 48.2 3.0 52 13-70 121-172 (181)
52 1c1y_A RAS-related protein RAP 97.4 4E-05 1.4E-09 48.7 1.0 49 14-70 108-156 (167)
53 1ek0_A Protein (GTP-binding pr 97.4 1.9E-05 6.4E-10 50.3 -0.6 51 14-70 108-158 (170)
54 2bov_A RAla, RAS-related prote 97.4 5.6E-05 1.9E-09 49.9 1.8 49 14-71 119-167 (206)
55 4djt_A GTP-binding nuclear pro 97.4 7.9E-05 2.7E-09 49.9 2.5 48 15-71 118-165 (218)
56 4dsu_A GTPase KRAS, isoform 2B 97.4 0.00011 3.9E-09 47.5 3.1 47 15-71 110-156 (189)
57 1r8s_A ADP-ribosylation factor 97.4 0.00011 3.9E-09 46.6 3.0 51 14-70 101-151 (164)
58 1z0f_A RAB14, member RAS oncog 97.4 5E-05 1.7E-09 48.8 1.3 47 15-70 121-167 (179)
59 3iev_A GTP-binding protein ERA 97.4 5.3E-05 1.8E-09 54.7 1.5 50 15-71 123-172 (308)
60 2fh5_B SR-beta, signal recogni 97.4 0.00014 4.7E-09 48.6 3.5 14 15-28 116-129 (214)
61 2ce2_X GTPase HRAS; signaling 97.4 0.00014 4.8E-09 45.7 3.3 46 15-70 109-154 (166)
62 2efe_B Small GTP-binding prote 97.3 8.9E-05 3E-09 47.8 2.2 49 14-71 117-165 (181)
63 2a9k_A RAS-related protein RAL 97.3 4.1E-05 1.4E-09 49.5 0.6 49 14-71 123-171 (187)
64 2q3h_A RAS homolog gene family 97.3 0.00027 9.2E-09 46.6 4.6 53 14-71 124-185 (201)
65 2g6b_A RAS-related protein RAB 97.3 0.0001 3.5E-09 47.5 2.4 49 14-71 116-164 (180)
66 1g16_A RAS-related protein SEC 97.3 0.00015 5.2E-09 46.0 3.2 48 14-71 108-155 (170)
67 1zd9_A ADP-ribosylation factor 97.3 0.00014 4.8E-09 47.8 3.1 52 14-71 124-175 (188)
68 2j0v_A RAC-like GTP-binding pr 97.3 9.1E-05 3.1E-09 49.4 2.1 53 14-71 113-170 (212)
69 2hxs_A RAB-26, RAS-related pro 97.3 8.3E-05 2.9E-09 47.8 1.7 50 13-71 114-163 (178)
70 2p67_A LAO/AO transport system 97.3 0.00035 1.2E-08 51.1 5.3 54 16-71 196-251 (341)
71 1wms_A RAB-9, RAB9, RAS-relate 97.3 0.00018 6.1E-09 46.2 3.3 49 14-71 116-164 (177)
72 3tkl_A RAS-related protein RAB 97.3 9.6E-05 3.3E-09 48.4 2.0 48 15-71 122-169 (196)
73 1zbd_A Rabphilin-3A; G protein 97.3 0.00015 5.3E-09 47.9 2.9 49 14-71 113-161 (203)
74 1zo1_I IF2, translation initia 97.3 5E-06 1.7E-10 64.5 -5.0 56 8-71 98-157 (501)
75 2b6h_A ADP-ribosylation factor 97.3 0.00016 5.6E-09 47.9 3.0 51 14-70 130-180 (192)
76 1z2a_A RAS-related protein RAB 97.2 8.6E-05 3E-09 47.1 1.5 48 14-70 109-156 (168)
77 3tw8_B RAS-related protein RAB 97.2 8.3E-05 2.8E-09 47.8 1.4 49 14-71 113-161 (181)
78 3clv_A RAB5 protein, putative; 97.2 0.00011 3.8E-09 47.8 2.0 47 15-71 148-194 (208)
79 2y8e_A RAB-protein 6, GH09086P 97.2 7.6E-05 2.6E-09 47.9 1.2 47 15-70 120-166 (179)
80 3t5d_A Septin-7; GTP-binding p 97.2 0.0002 6.7E-09 50.6 3.4 51 14-71 144-194 (274)
81 2fu5_C RAS-related protein RAB 97.2 0.00014 4.7E-09 47.2 2.4 48 15-71 114-161 (183)
82 3con_A GTPase NRAS; structural 97.2 0.00011 3.8E-09 48.0 1.8 47 15-71 127-173 (190)
83 3q85_A GTP-binding protein REM 97.2 7.8E-05 2.7E-09 47.6 0.9 48 14-70 109-156 (169)
84 2gf0_A GTP-binding protein DI- 97.2 0.00012 4.2E-09 48.0 1.9 47 15-71 115-161 (199)
85 1m2o_B GTP-binding protein SAR 97.2 8.7E-05 3E-09 49.2 1.2 51 14-70 124-181 (190)
86 1ega_A Protein (GTP-binding pr 97.2 0.00036 1.2E-08 50.2 4.5 49 15-71 117-165 (301)
87 3th5_A RAS-related C3 botulinu 96.3 5.1E-05 1.7E-09 50.5 0.0 53 14-71 134-195 (204)
88 2iwr_A Centaurin gamma 1; ANK 97.2 0.00044 1.5E-08 44.6 4.4 52 14-71 108-159 (178)
89 1z08_A RAS-related protein RAB 97.2 7.5E-05 2.6E-09 47.6 0.7 47 15-70 112-158 (170)
90 3kkq_A RAS-related protein M-R 97.2 0.00016 5.5E-09 46.9 2.3 47 15-70 124-171 (183)
91 2erx_A GTP-binding protein DI- 97.2 8.6E-05 2.9E-09 47.2 0.9 49 14-71 109-157 (172)
92 1x3s_A RAS-related protein RAB 97.2 0.0003 1E-08 45.8 3.5 48 14-71 121-168 (195)
93 2gf9_A RAS-related protein RAB 97.2 0.00012 4.1E-09 48.0 1.6 49 14-71 127-175 (189)
94 3llu_A RAS-related GTP-binding 97.2 0.0004 1.4E-08 45.9 4.1 55 14-70 129-186 (196)
95 1puj_A YLQF, conserved hypothe 97.2 0.00049 1.7E-08 49.3 4.8 49 11-70 47-95 (282)
96 3o47_A ADP-ribosylation factor 97.1 0.00028 9.6E-09 51.4 3.4 52 14-71 266-317 (329)
97 1f6b_A SAR1; gtpases, N-termin 97.1 0.00015 5.2E-09 48.3 1.8 51 14-70 126-188 (198)
98 2wkq_A NPH1-1, RAS-related C3 97.1 0.0003 1E-08 49.7 3.4 52 14-70 259-319 (332)
99 1ky3_A GTP-binding protein YPT 97.1 9.7E-05 3.3E-09 47.5 0.8 51 14-71 118-168 (182)
100 3cph_A RAS-related protein SEC 97.1 0.00036 1.2E-08 46.2 3.6 48 14-71 125-172 (213)
101 1kao_A RAP2A; GTP-binding prot 97.1 3.9E-05 1.3E-09 48.5 -1.2 48 14-70 108-155 (167)
102 3dz8_A RAS-related protein RAB 97.1 0.00015 5E-09 47.7 1.6 49 14-71 128-176 (191)
103 2fg5_A RAB-22B, RAS-related pr 97.1 7.1E-05 2.4E-09 49.4 0.0 49 14-71 128-176 (192)
104 3bc1_A RAS-related protein RAB 97.1 0.00014 5E-09 47.0 1.4 49 14-71 127-175 (195)
105 1r2q_A RAS-related protein RAB 97.1 0.0001 3.5E-09 46.8 0.6 47 15-70 112-158 (170)
106 1vg8_A RAS-related protein RAB 97.1 0.00031 1.1E-08 46.3 3.0 48 15-71 118-165 (207)
107 2hup_A RAS-related protein RAB 97.1 0.00021 7.1E-09 47.7 2.1 50 14-71 134-183 (201)
108 2a5j_A RAS-related protein RAB 97.1 0.0002 6.7E-09 47.1 1.9 49 14-71 126-174 (191)
109 2bcg_Y Protein YP2, GTP-bindin 97.1 0.00019 6.6E-09 47.6 1.9 49 14-71 113-161 (206)
110 1z0j_A RAB-22, RAS-related pro 97.1 0.00014 4.8E-09 46.2 1.1 48 14-70 111-158 (170)
111 1t9h_A YLOQ, probable GTPase E 97.1 0.00059 2E-08 49.9 4.5 52 12-71 116-167 (307)
112 3ihw_A Centg3; RAS, centaurin, 97.1 0.00066 2.2E-08 44.7 4.4 51 15-71 120-170 (184)
113 1m7b_A RND3/RHOE small GTP-bin 97.1 0.0003 1E-08 45.9 2.7 52 14-70 111-172 (184)
114 1u0l_A Probable GTPase ENGC; p 97.1 0.00047 1.6E-08 49.6 3.9 48 15-71 116-163 (301)
115 2wsm_A Hydrogenase expression/ 97.1 7.6E-05 2.6E-09 50.2 -0.3 49 16-71 156-204 (221)
116 3t5g_A GTP-binding protein RHE 97.0 8.3E-05 2.8E-09 48.2 -0.2 48 15-71 112-159 (181)
117 3izy_P Translation initiation 97.0 7.9E-06 2.7E-10 63.9 -6.0 60 8-71 99-158 (537)
118 2yc2_C IFT27, small RAB-relate 97.0 0.00033 1.1E-08 46.0 2.7 50 14-71 132-182 (208)
119 2oil_A CATX-8, RAS-related pro 97.0 0.00014 4.8E-09 47.7 0.9 49 14-71 130-178 (193)
120 2fn4_A P23, RAS-related protei 97.0 0.00012 4.1E-09 47.0 0.4 48 15-71 115-162 (181)
121 2p5s_A RAS and EF-hand domain 97.0 4.8E-05 1.6E-09 50.5 -1.6 51 15-70 134-186 (199)
122 2bme_A RAB4A, RAS-related prot 97.0 0.00015 5E-09 47.1 0.8 48 15-71 116-163 (186)
123 2il1_A RAB12; G-protein, GDP, 97.0 0.00012 3.9E-09 48.5 -0.0 50 14-71 131-180 (192)
124 2f7s_A C25KG, RAS-related prot 97.0 0.00019 6.3E-09 48.1 1.0 50 13-71 140-189 (217)
125 2o52_A RAS-related protein RAB 96.9 0.00019 6.3E-09 47.8 0.9 48 15-71 131-178 (200)
126 2ew1_A RAS-related protein RAB 96.9 0.00022 7.4E-09 48.0 1.1 49 14-71 131-179 (201)
127 1wf3_A GTP-binding protein; GT 96.9 0.00037 1.3E-08 50.3 2.3 46 14-70 117-162 (301)
128 2atv_A RERG, RAS-like estrogen 96.9 0.00023 8E-09 46.9 1.1 47 15-70 133-180 (196)
129 2rcn_A Probable GTPase ENGC; Y 96.9 0.0008 2.7E-08 50.2 4.0 51 12-71 159-209 (358)
130 3oes_A GTPase rhebl1; small GT 96.9 0.00012 4.2E-09 48.6 -0.5 48 15-71 130-177 (201)
131 2dyk_A GTP-binding protein; GT 96.9 7.9E-05 2.7E-09 47.1 -1.4 43 15-70 109-151 (161)
132 2g3y_A GTP-binding protein GEM 96.9 0.00031 1.1E-08 48.1 1.5 48 15-71 146-193 (211)
133 3iby_A Ferrous iron transport 96.9 5.4E-05 1.9E-09 53.4 -2.4 47 15-71 111-157 (256)
134 3lvq_E ARF-GAP with SH3 domain 96.9 0.00053 1.8E-08 51.9 2.9 52 14-71 423-474 (497)
135 1gwn_A RHO-related GTP-binding 96.9 0.00054 1.8E-08 46.1 2.6 52 14-70 132-193 (205)
136 2hf9_A Probable hydrogenase ni 96.8 0.00012 4.1E-09 49.4 -0.9 48 16-70 166-213 (226)
137 3cbq_A GTP-binding protein REM 96.8 0.00044 1.5E-08 46.0 1.8 49 14-71 130-178 (195)
138 1yrb_A ATP(GTP)binding protein 96.8 0.00084 2.9E-08 46.2 3.3 16 55-70 231-246 (262)
139 3gj0_A GTP-binding nuclear pro 96.8 0.00019 6.4E-09 48.3 -0.1 47 14-71 119-165 (221)
140 3cb4_D GTP-binding protein LEP 96.8 0.0014 4.7E-08 51.8 4.6 50 12-70 122-171 (599)
141 3r7w_A Gtpase1, GTP-binding pr 96.8 0.0015 5E-08 47.0 4.3 50 15-68 116-168 (307)
142 3c5h_A Glucocorticoid receptor 96.7 0.00094 3.2E-08 46.6 3.2 46 15-70 199-244 (255)
143 3cpj_B GTP-binding protein YPT 96.7 0.0003 1E-08 47.6 0.5 48 15-71 119-166 (223)
144 2ywe_A GTP-binding protein LEP 96.7 0.00096 3.3E-08 52.8 3.4 51 11-70 123-173 (600)
145 3gee_A MNME, tRNA modification 96.7 0.0011 3.6E-08 51.0 3.6 46 14-71 343-388 (476)
146 1z06_A RAS-related protein RAB 96.7 0.00037 1.2E-08 45.6 0.7 47 15-70 128-177 (189)
147 2qag_A Septin-2, protein NEDD5 96.7 0.00075 2.6E-08 49.8 2.4 46 15-67 175-220 (361)
148 1nrj_B SR-beta, signal recogni 96.7 0.00086 2.9E-08 44.8 2.4 49 15-68 121-171 (218)
149 3k53_A Ferrous iron transport 96.7 0.00016 5.4E-09 50.9 -1.4 50 12-71 107-156 (271)
150 1lnz_A SPO0B-associated GTP-bi 96.6 0.00016 5.5E-09 53.4 -1.4 47 14-71 274-320 (342)
151 2e87_A Hypothetical protein PH 96.6 0.001 3.4E-08 48.7 2.6 47 14-71 280-326 (357)
152 3i8s_A Ferrous iron transport 96.6 6.1E-05 2.1E-09 53.5 -4.1 47 15-71 113-159 (274)
153 3cnl_A YLQF, putative uncharac 96.6 0.0025 8.7E-08 45.1 4.4 45 14-70 46-90 (262)
154 4dkx_A RAS-related protein RAB 96.5 0.00077 2.6E-08 46.4 1.6 48 15-71 119-166 (216)
155 2wji_A Ferrous iron transport 96.5 0.00035 1.2E-08 45.0 -0.3 46 15-70 109-154 (165)
156 3q3j_B RHO-related GTP-binding 96.5 0.0014 4.7E-08 44.2 2.7 52 14-70 131-192 (214)
157 2zej_A Dardarin, leucine-rich 96.4 0.0018 6E-08 42.4 2.7 53 15-70 113-167 (184)
158 3a1s_A Iron(II) transport prot 96.4 0.00048 1.6E-08 48.5 -0.2 47 15-71 111-157 (258)
159 3c5c_A RAS-like protein 12; GD 96.4 0.00049 1.7E-08 45.3 -0.2 48 14-70 127-175 (187)
160 2cjw_A GTP-binding protein GEM 96.3 0.00097 3.3E-08 44.2 0.9 48 15-71 115-162 (192)
161 3dpu_A RAB family protein; roc 96.3 0.001 3.5E-08 51.2 0.9 48 15-71 151-198 (535)
162 2www_A Methylmalonic aciduria 96.2 0.0039 1.3E-07 45.7 3.9 54 16-71 214-269 (349)
163 1pui_A ENGB, probable GTP-bind 96.2 0.0057 1.9E-07 40.4 4.3 54 12-71 136-189 (210)
164 2aka_B Dynamin-1; fusion prote 96.2 0.00063 2.2E-08 47.7 -0.5 49 15-71 193-243 (299)
165 3tr5_A RF-3, peptide chain rel 96.2 0.0067 2.3E-07 47.1 5.2 16 55-70 251-266 (528)
166 3b1v_A Ferrous iron uptake tra 96.2 0.00073 2.5E-08 48.1 -0.3 49 12-71 106-154 (272)
167 2qnr_A Septin-2, protein NEDD5 96.1 0.004 1.4E-07 44.8 3.5 49 15-71 156-204 (301)
168 3qq5_A Small GTP-binding prote 96.1 0.00072 2.5E-08 51.3 -0.6 46 15-71 141-186 (423)
169 1xzp_A Probable tRNA modificat 96.1 0.0022 7.5E-08 49.3 2.0 47 13-71 349-395 (482)
170 2qm8_A GTPase/ATPase; G protei 96.1 0.0061 2.1E-07 44.6 4.2 54 17-71 196-251 (337)
171 3l0i_B RAS-related protein RAB 95.9 6.2E-05 2.1E-09 50.0 -6.4 49 14-71 138-186 (199)
172 2wjg_A FEOB, ferrous iron tran 95.9 0.0011 3.7E-08 43.0 -0.3 47 15-71 113-159 (188)
173 2gj8_A MNME, tRNA modification 95.9 0.00022 7.4E-09 46.6 -3.8 41 15-71 116-156 (172)
174 1udx_A The GTP-binding protein 95.7 0.01 3.6E-07 44.8 4.3 47 14-71 269-315 (416)
175 2qag_C Septin-7; cell cycle, c 95.6 0.013 4.4E-07 44.4 4.5 49 15-70 168-216 (418)
176 2qtf_A Protein HFLX, GTP-bindi 95.6 0.018 6E-07 42.6 5.0 53 14-71 292-344 (364)
177 1wxq_A GTP-binding protein; st 95.6 0.0038 1.3E-07 46.8 1.4 46 15-71 215-260 (397)
178 1mky_A Probable GTP-binding pr 95.5 0.0051 1.7E-07 46.2 1.7 44 15-70 111-155 (439)
179 2hjg_A GTP-binding protein ENG 95.0 0.0031 1.1E-07 47.3 -0.8 43 15-70 112-154 (436)
180 3zvr_A Dynamin-1; hydrolase, D 94.6 0.0026 8.9E-08 51.8 -2.1 49 15-71 218-268 (772)
181 3geh_A MNME, tRNA modification 94.6 0.011 3.8E-07 45.2 1.5 46 13-71 329-374 (462)
182 2j69_A Bacterial dynamin-like 94.0 0.041 1.4E-06 43.9 3.6 50 13-63 230-293 (695)
183 2f9l_A RAB11B, member RAS onco 94.0 0.028 9.6E-07 36.9 2.3 48 15-71 111-158 (199)
184 3def_A T7I23.11 protein; chlor 93.7 0.09 3.1E-06 36.4 4.6 54 15-68 152-212 (262)
185 4dcu_A GTP-binding protein ENG 93.4 0.02 6.8E-07 43.1 0.8 43 15-70 132-174 (456)
186 2xex_A Elongation factor G; GT 93.4 0.049 1.7E-06 43.4 3.1 47 12-68 126-172 (693)
187 2x2e_A Dynamin-1; nitration, h 93.3 0.0047 1.6E-07 45.1 -2.8 49 15-71 198-248 (353)
188 3r7w_B Gtpase2, GTP-binding pr 92.9 0.055 1.9E-06 40.0 2.5 54 15-70 107-163 (331)
189 1cip_A Protein (guanine nucleo 92.8 0.051 1.7E-06 40.1 2.2 54 14-70 260-333 (353)
190 2h5e_A Peptide chain release f 92.5 0.064 2.2E-06 41.6 2.5 55 10-71 131-185 (529)
191 2ged_A SR-beta, signal recogni 92.1 0.1 3.4E-06 33.6 2.8 14 15-28 157-170 (193)
192 1oix_A RAS-related protein RAB 91.8 0.064 2.2E-06 35.1 1.6 48 14-70 134-181 (191)
193 2dy1_A Elongation factor G; tr 91.5 0.2 6.7E-06 39.8 4.3 16 11-27 124-139 (665)
194 1n0u_A EF-2, elongation factor 91.4 0.11 3.6E-06 42.5 2.7 55 12-67 149-219 (842)
195 2xtp_A GTPase IMAP family memb 91.4 0.018 6.2E-07 39.6 -1.6 54 15-71 139-198 (260)
196 1jwy_B Dynamin A GTPase domain 91.0 0.012 4.1E-07 41.5 -2.9 14 15-28 199-212 (315)
197 1zcb_A G alpha I/13; GTP-bindi 90.5 0.044 1.5E-06 40.6 -0.3 57 14-70 268-342 (362)
198 1dar_A EF-G, elongation factor 90.3 0.12 4.1E-06 41.2 2.1 44 11-62 127-170 (691)
199 1h65_A Chloroplast outer envel 89.4 0.25 8.6E-06 34.2 2.9 77 15-93 155-242 (270)
200 3vqt_A RF-3, peptide chain rel 88.8 0.47 1.6E-05 36.8 4.3 34 8-45 147-180 (548)
201 3j25_A Tetracycline resistance 87.9 0.2 6.9E-06 39.5 1.7 20 8-28 114-133 (638)
202 3lxx_A GTPase IMAP family memb 87.5 0.46 1.6E-05 32.0 3.2 45 15-64 146-192 (239)
203 3t34_A Dynamin-related protein 86.4 0.072 2.5E-06 38.7 -1.5 47 16-71 205-251 (360)
204 2qag_B Septin-6, protein NEDD5 84.2 0.46 1.6E-05 36.1 2.0 31 14-46 176-206 (427)
205 2dby_A GTP-binding protein; GD 82.9 0.56 1.9E-05 34.7 2.0 52 12-72 199-253 (368)
206 3lxw_A GTPase IMAP family memb 82.8 2.1 7.2E-05 29.2 4.8 36 15-50 140-177 (247)
207 3l82_B F-box only protein 4; T 81.9 0.61 2.1E-05 32.8 1.7 47 16-70 164-212 (227)
208 4fn5_A EF-G 1, elongation fact 81.0 1.8 6.1E-05 34.5 4.3 33 9-45 133-165 (709)
209 2qpt_A EH domain-containing pr 79.9 1.4 4.9E-05 34.1 3.4 26 15-42 219-244 (550)
210 2xtz_A Guanine nucleotide-bind 79.4 0.6 2.1E-05 34.3 1.1 16 55-70 319-334 (354)
211 3sop_A Neuronal-specific septi 78.8 3 0.0001 29.2 4.5 33 15-49 141-173 (270)
212 2rdo_7 EF-G, elongation factor 78.1 1.6 5.6E-05 34.8 3.3 32 10-45 131-162 (704)
213 3ohm_A Guanine nucleotide-bind 77.3 0.68 2.3E-05 33.8 0.8 57 13-69 233-306 (327)
214 3l2o_B F-box only protein 4; s 74.8 1.3 4.4E-05 32.5 1.7 47 16-70 249-297 (312)
215 1azs_C GS-alpha; complex (lyas 66.8 1.9 6.3E-05 32.4 1.1 17 54-70 358-374 (402)
216 1jal_A YCHF protein; nucleotid 66.5 3.8 0.00013 30.3 2.7 53 11-72 196-248 (363)
217 4fid_A G protein alpha subunit 64.1 1.3 4.5E-05 32.5 -0.2 15 13-27 227-241 (340)
218 1tq4_A IIGP1, interferon-induc 59.8 5.8 0.0002 29.7 2.7 54 15-70 176-242 (413)
219 4a9a_A Ribosome-interacting GT 57.0 6.1 0.00021 29.3 2.3 40 16-71 251-290 (376)
220 2v3c_C SRP54, signal recogniti 35.5 45 0.0015 24.9 4.2 14 15-28 239-252 (432)
221 2k1h_A Uncharacterized protein 33.6 38 0.0013 20.2 2.9 27 18-45 60-86 (94)
222 1ni3_A YCHF GTPase, YCHF GTP-b 33.6 23 0.00079 26.3 2.3 51 11-68 221-273 (392)
223 3v4m_A Splicing factor U2AF 65 31.1 66 0.0023 18.8 3.8 34 16-49 6-40 (105)
224 3dm5_A SRP54, signal recogniti 30.7 1.1E+02 0.0037 23.1 5.6 43 15-72 240-282 (443)
225 2ohf_A Protein OLA1, GTP-bindi 28.0 30 0.001 25.8 2.1 48 11-65 219-268 (396)
226 2j37_W Signal recognition part 24.2 73 0.0025 24.4 3.7 11 18-28 244-254 (504)
227 3kl4_A SRP54, signal recogniti 23.0 2E+02 0.0069 21.5 5.9 41 16-71 240-280 (433)
228 2p5t_B PEZT; postsegregational 22.1 1.8E+02 0.0061 19.3 5.2 46 24-69 1-46 (253)
229 4e8b_A Ribosomal RNA small sub 21.7 1.6E+02 0.0054 20.2 4.7 42 8-49 98-143 (251)
No 1
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.64 E-value=2.6e-16 Score=119.72 Aligned_cols=84 Identities=40% Similarity=0.740 Sum_probs=74.1
Q ss_pred eeccCCCeEEEEEEcCCCC--CCCHHHHHHHHHHHHHHHHHhCCCCC-CceEEEeeeccCCCCCCCCCCCCCCCccccCc
Q psy15201 9 SAVSGVNQLGVVINKLDTV--SWSQDRFQEIVTKLGAFLKQAGFRDS-DIEYVPCSGLTGENLTTPSQVPALTSWYSGPC 85 (97)
Q Consensus 9 ~~~lGvk~~Iv~INK~D~v--~~~~~~~~~i~~~l~~~l~~~~~~~~-~~~iipiSA~~G~ni~~~~~~~~~~~W~~g~t 85 (97)
++.+|++++|+++||||++ +|++++++++.+++..+++..++.+. +.+++|+||++|.|+.++... ++||+|++
T Consensus 150 ~~~~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~~---~~w~~g~~ 226 (439)
T 3j2k_7 150 AKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSDF---CPWYIGLP 226 (439)
T ss_pred HHHcCCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCccccccccc---ccccCchH
Confidence 4568999999999999984 57889999999999999999888643 689999999999999998776 99999999
Q ss_pred hHHHhccccC
Q psy15201 86 LLDVIGLSGL 95 (97)
Q Consensus 86 lle~ld~~~~ 95 (97)
|+++|+.++.
T Consensus 227 L~~~l~~i~~ 236 (439)
T 3j2k_7 227 FIPYLDNLPN 236 (439)
T ss_pred HHHHHHhCCC
Confidence 9999998763
No 2
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.61 E-value=2.4e-15 Score=118.78 Aligned_cols=85 Identities=35% Similarity=0.720 Sum_probs=75.4
Q ss_pred eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCCCCCCCccccCchHH
Q psy15201 9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLD 88 (97)
Q Consensus 9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~g~tlle 88 (97)
++.+|++++|+|+||+|++++++.+++++++++..+++..++.+...+++|+||++|.|+.+.+.....++||+|++|++
T Consensus 300 ~~~lgi~~iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~ 379 (611)
T 3izq_1 300 ASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMS 379 (611)
T ss_dssp HHTTTCCEEEEEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHH
T ss_pred HHHcCCCeEEEEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccCccccccccccCCcHHH
Confidence 45579999999999999998889999999999999999988866678999999999999998865433489999999999
Q ss_pred Hhccc
Q psy15201 89 VIGLS 93 (97)
Q Consensus 89 ~ld~~ 93 (97)
+|+.+
T Consensus 380 ~L~~l 384 (611)
T 3izq_1 380 TLENA 384 (611)
T ss_dssp HHTTS
T ss_pred HHHHH
Confidence 99988
No 3
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.59 E-value=5e-16 Score=119.10 Aligned_cols=85 Identities=35% Similarity=0.720 Sum_probs=74.1
Q ss_pred eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCCCCCCCccccCchHH
Q psy15201 9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLD 88 (97)
Q Consensus 9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~g~tlle 88 (97)
++.+|++++|+++||||++++++.+++++++++..+++..++.+...+++|+||++|+|+.+++.....++||+|++|++
T Consensus 166 ~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~ 245 (483)
T 3p26_A 166 ASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMS 245 (483)
T ss_dssp HHHTTCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSCCCHHHHHHCCSCCHHH
T ss_pred HHHcCCCcEEEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccccCcccccccccCCCCHHH
Confidence 45589999999999999998889999999999999999988866678999999999999998865311268999999999
Q ss_pred Hhccc
Q psy15201 89 VIGLS 93 (97)
Q Consensus 89 ~ld~~ 93 (97)
+|+.+
T Consensus 246 ~L~~i 250 (483)
T 3p26_A 246 TLENA 250 (483)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99887
No 4
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.56 E-value=8.5e-15 Score=110.87 Aligned_cols=84 Identities=25% Similarity=0.581 Sum_probs=72.9
Q ss_pred eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCCCCCCCccccCchHH
Q psy15201 9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLD 88 (97)
Q Consensus 9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~g~tlle 88 (97)
++.+|++++|+++||+|++++++++++++.++++.+++..++.....+++|+||++|.|+.+.... ++||+|++|++
T Consensus 152 ~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~---~~w~~g~~L~~ 228 (434)
T 1zun_B 152 ASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSER---SPWYAGQSLME 228 (434)
T ss_dssp HHHTTCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTT---CTTCCSCCTTH
T ss_pred HHHcCCCeEEEEEEcCcCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccccc---CccccCchHHH
Confidence 346789999999999999987788899999999999987774334689999999999999998876 89999999999
Q ss_pred HhccccC
Q psy15201 89 VIGLSGL 95 (97)
Q Consensus 89 ~ld~~~~ 95 (97)
+|+.++.
T Consensus 229 ~l~~i~~ 235 (434)
T 1zun_B 229 ILETVEI 235 (434)
T ss_dssp HHHHSCC
T ss_pred HHhcCCC
Confidence 9998764
No 5
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.56 E-value=9.1e-15 Score=110.85 Aligned_cols=83 Identities=30% Similarity=0.663 Sum_probs=73.7
Q ss_pred eeccCCCeEEEEEEcCCCCC--CCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCCCCCCCccccCch
Q psy15201 9 SAVSGVNQLGVVINKLDTVS--WSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCL 86 (97)
Q Consensus 9 ~~~lGvk~~Iv~INK~D~v~--~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~g~tl 86 (97)
++.+|++++|+++||||+++ |++++++++.++++.+++..++.+...+++|+||++|+|+.+.... ++||+|++|
T Consensus 139 ~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~~---~~~~~g~~L 215 (435)
T 1jny_A 139 AKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSEN---MKWYNGPTL 215 (435)
T ss_dssp HHHTTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCSS---CTTCCSCCH
T ss_pred HHHcCCCeEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccccc---cccccchhH
Confidence 34579999999999999987 7789999999999999998888656689999999999999988765 899999999
Q ss_pred HHHhcccc
Q psy15201 87 LDVIGLSG 94 (97)
Q Consensus 87 le~ld~~~ 94 (97)
+++|+.++
T Consensus 216 l~~l~~~~ 223 (435)
T 1jny_A 216 EEYLDQLE 223 (435)
T ss_dssp HHHHTTCC
T ss_pred HHHHhccC
Confidence 99998864
No 6
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.56 E-value=6.2e-15 Score=112.66 Aligned_cols=83 Identities=37% Similarity=0.741 Sum_probs=73.0
Q ss_pred eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCCCCCCCccc------
Q psy15201 9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYS------ 82 (97)
Q Consensus 9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~------ 82 (97)
++.+|++++|+++||||+++|++++++++.++++.+++..++.+++.+++|+||++|+|+.+.+.. ++||+
T Consensus 140 ~~~~~v~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~~~---~~~~~~~~~~~ 216 (458)
T 1f60_A 140 AFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATTN---APWYKGWEKET 216 (458)
T ss_dssp HHHTTCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCCSS---CTTCCCEEEEC
T ss_pred HHHcCCCeEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccccccc---Cchhhcccccc
Confidence 456899899999999999987889999999999999998888555689999999999999988765 89997
Q ss_pred ------cCchHHHhcccc
Q psy15201 83 ------GPCLLDVIGLSG 94 (97)
Q Consensus 83 ------g~tlle~ld~~~ 94 (97)
|++|+++|+.++
T Consensus 217 ~tg~~~~~~Ll~~l~~~~ 234 (458)
T 1f60_A 217 KAGVVKGKTLLEAIDAIE 234 (458)
T ss_dssp SSSEEEESSHHHHHHTSC
T ss_pred cccccchHHHHHHhhccC
Confidence 679999999864
No 7
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.56 E-value=3.9e-15 Score=117.18 Aligned_cols=84 Identities=40% Similarity=0.762 Sum_probs=73.8
Q ss_pred eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHH-HHhCCCCCCceEEEeeeccCCCCCCCCCCCCCCCccccCchH
Q psy15201 9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFL-KQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLL 87 (97)
Q Consensus 9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l-~~~~~~~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~g~tll 87 (97)
++.+|++++|+|+||||++++++++++++.+++..++ +..++.+..++++|+||++|.|+.+++.. ..++||+|++|+
T Consensus 310 ~~~lgip~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~-~~~~w~~g~~Ll 388 (592)
T 3mca_A 310 LRALGISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSS-DLYKWYKGPTLL 388 (592)
T ss_dssp HHHSSCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCC-GGGGTCCSCCHH
T ss_pred HHHcCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCccccccccc-ccccccchHHHH
Confidence 4568998999999999999888999999999999998 87888666789999999999999988753 348999999999
Q ss_pred HHhccc
Q psy15201 88 DVIGLS 93 (97)
Q Consensus 88 e~ld~~ 93 (97)
++|+.+
T Consensus 389 e~l~~~ 394 (592)
T 3mca_A 389 SALDQL 394 (592)
T ss_dssp HHHHTS
T ss_pred HHHHhh
Confidence 999775
No 8
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.55 E-value=7.9e-15 Score=112.31 Aligned_cols=86 Identities=37% Similarity=0.784 Sum_probs=72.4
Q ss_pred eeccCCCeEEEEEEcCCCC--CCCHHHHHHHHHHHHHHHHHh-CCC-CCCceEEEeeeccCCCCCCCCCCCCCCCccccC
Q psy15201 9 SAVSGVNQLGVVINKLDTV--SWSQDRFQEIVTKLGAFLKQA-GFR-DSDIEYVPCSGLTGENLTTPSQVPALTSWYSGP 84 (97)
Q Consensus 9 ~~~lGvk~~Iv~INK~D~v--~~~~~~~~~i~~~l~~~l~~~-~~~-~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~g~ 84 (97)
++.+|++++|+++||||+. +|++++++++.+++..+++.. ++. ....+++|+||++|.|+.+.... ..++||+|+
T Consensus 176 ~~~~~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~~-~~~~w~~g~ 254 (467)
T 1r5b_A 176 ARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDS-SVCPWYQGP 254 (467)
T ss_dssp HHHTTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCT-TTCSSCCSC
T ss_pred HHHcCCCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccccc-ccCccccch
Confidence 4568998899999999994 578899999999999999887 774 12579999999999999887642 348999999
Q ss_pred chHHHhccccC
Q psy15201 85 CLLDVIGLSGL 95 (97)
Q Consensus 85 tlle~ld~~~~ 95 (97)
+|+++|+.++.
T Consensus 255 ~L~~~l~~i~~ 265 (467)
T 1r5b_A 255 SLLEYLDSMTH 265 (467)
T ss_dssp CHHHHHHHCCC
T ss_pred hHHHHHHhCCC
Confidence 99999998764
No 9
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.04 E-value=1.3e-10 Score=86.95 Aligned_cols=76 Identities=18% Similarity=0.255 Sum_probs=62.6
Q ss_pred eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCCCCCCCcccc--Cch
Q psy15201 9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSG--PCL 86 (97)
Q Consensus 9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~g--~tl 86 (97)
++.+|++++|+++||+|+++ ++++++.+.++++.+++..++.++..+++|+||++|.|. .+ ++|+.| ..|
T Consensus 114 ~~~~~vp~iivviNK~Dl~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~----~~---~~~~~g~i~~L 185 (397)
T 1d2e_A 114 ARQIGVEHVVVYVNKADAVQ-DSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQ----RD---PELGLKSVQKL 185 (397)
T ss_dssp HHHTTCCCEEEEEECGGGCS-CHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTT----CC---TTTTHHHHHHH
T ss_pred HHHcCCCeEEEEEECcccCC-CHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccc----cC---CCccCCcHHHH
Confidence 44578988999999999986 577888888899999998888656789999999999984 22 689987 678
Q ss_pred HHHhcc
Q psy15201 87 LDVIGL 92 (97)
Q Consensus 87 le~ld~ 92 (97)
+++|+.
T Consensus 186 l~~l~~ 191 (397)
T 1d2e_A 186 LDAVDT 191 (397)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888864
No 10
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.95 E-value=1.1e-10 Score=87.36 Aligned_cols=83 Identities=20% Similarity=0.260 Sum_probs=64.4
Q ss_pred eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCC--CCCCCcccc-Cc
Q psy15201 9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQV--PALTSWYSG-PC 85 (97)
Q Consensus 9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~--~~~~~W~~g-~t 85 (97)
++.+|++++|+++||+|+++ ++++++++.++++.+++..++.+...+++|+||++|.|+.+.+.+ ...++||.+ .+
T Consensus 123 ~~~~~ip~iivviNK~Dl~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~ 201 (405)
T 2c78_A 123 ARQVGVPYIVVFMNKVDMVD-DPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWE 201 (405)
T ss_dssp HHHTTCCCEEEEEECGGGCC-CHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHH
T ss_pred HHHcCCCEEEEEEECccccC-cHHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHH
Confidence 45578888999999999986 577788888899999988887655689999999999986543321 122789876 67
Q ss_pred hHHHhcc
Q psy15201 86 LLDVIGL 92 (97)
Q Consensus 86 lle~ld~ 92 (97)
|+++|+.
T Consensus 202 Ll~~l~~ 208 (405)
T 2c78_A 202 LLDAIDE 208 (405)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8888765
No 11
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.71 E-value=9.8e-09 Score=86.55 Aligned_cols=75 Identities=21% Similarity=0.245 Sum_probs=61.3
Q ss_pred eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCCCCCCCcccc-CchH
Q psy15201 9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSG-PCLL 87 (97)
Q Consensus 9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~g-~tll 87 (97)
++.+|++++|+++||||+++ ++++++++.++++.+++..++.++..+++|+||++|.|- . ++||.| ..|+
T Consensus 407 l~~lgIP~IIVVINKiDLv~-d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng-----~---~~w~eGI~eLl 477 (1289)
T 3avx_A 407 GRQVGVPYIIVFLNKCDMVD-DEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEG-----D---AEWEAKILELA 477 (1289)
T ss_dssp HHHHTCSCEEEEEECCTTCC-CHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTC-----C---HHHHHHHHHHH
T ss_pred HHHcCCCeEEEEEeeccccc-chhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCC-----C---ccccccchhhH
Confidence 45579988999999999986 677888888999999998888656789999999999651 2 579877 6777
Q ss_pred HHhcc
Q psy15201 88 DVIGL 92 (97)
Q Consensus 88 e~ld~ 92 (97)
++|+.
T Consensus 478 eaL~~ 482 (1289)
T 3avx_A 478 GFLDS 482 (1289)
T ss_dssp HHHHH
T ss_pred hHHhh
Confidence 77754
No 12
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.52 E-value=6.4e-08 Score=72.38 Aligned_cols=58 Identities=26% Similarity=0.363 Sum_probs=44.3
Q ss_pred eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
++.+|++++|+++||+|+++ .+...+..+++..+++..+. ...+++|+||++|+|+.+
T Consensus 124 ~~~~~~~~iivviNK~Dl~~--~~~~~~~~~~i~~~l~~~~~--~~~~ii~vSA~~g~gi~~ 181 (403)
T 3sjy_A 124 LGIIGVKNLIIVQNKVDVVS--KEEALSQYRQIKQFTKGTWA--ENVPIIPVSALHKINIDS 181 (403)
T ss_dssp HHHHTCCCEEEEEECGGGSC--HHHHHHHHHHHHHHHTTSTT--TTCCEEECBTTTTBSHHH
T ss_pred HHHcCCCCEEEEEECccccc--hHHHHHHHHHHHHHHHhhCC--CCCEEEEEECCCCcChHH
Confidence 34578999999999999985 45555666677776654433 468999999999999854
No 13
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.42 E-value=1.2e-07 Score=72.79 Aligned_cols=57 Identities=18% Similarity=0.239 Sum_probs=47.2
Q ss_pred eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHh-CCCCCCceEEEeeeccCCCCCC
Q psy15201 9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQA-GFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~-~~~~~~~~iipiSA~~G~ni~~ 70 (97)
++.+|++. |+++||+|+++ +++++++.++++.+++.. ++. ..+++|+||++|+|+.+
T Consensus 121 ~~~~~ip~-IvviNK~Dl~~--~~~~~~~~~~l~~~l~~~~~~~--~~~ii~vSA~~g~gI~~ 178 (482)
T 1wb1_A 121 LDHFNIPI-IVVITKSDNAG--TEEIKRTEMIMKSILQSTHNLK--NSSIIPISAKTGFGVDE 178 (482)
T ss_dssp HHHTTCCB-CEEEECTTSSC--HHHHHHHHHHHHHHHHHSSSGG--GCCEEECCTTTCTTHHH
T ss_pred HHHcCCCE-EEEEECCCccc--chhHHHHHHHHHHHHhhhcccc--cceEEEEECcCCCCHHH
Confidence 45678877 99999999984 778888889999988876 552 57999999999999854
No 14
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.38 E-value=2.3e-07 Score=69.45 Aligned_cols=57 Identities=19% Similarity=0.380 Sum_probs=42.2
Q ss_pred eccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 10 AVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 10 ~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
+.+|++++|+++||+|+++ .++..+..+++..+++... ....+++|+||++|.|+.+
T Consensus 133 ~~~~~~~iivviNK~Dl~~--~~~~~~~~~~i~~~l~~~~--~~~~~~i~vSA~~g~gi~~ 189 (410)
T 1kk1_A 133 QIIGQKNIIIAQNKIELVD--KEKALENYRQIKEFIEGTV--AENAPIIPISALHGANIDV 189 (410)
T ss_dssp HHHTCCCEEEEEECGGGSC--HHHHHHHHHHHHHHHTTST--TTTCCEEECBTTTTBSHHH
T ss_pred HHcCCCcEEEEEECccCCC--HHHHHHHHHHHHHHHHhcC--cCCCeEEEeeCCCCCCHHH
Confidence 4578999999999999985 3444455566666665432 2357999999999999853
No 15
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.30 E-value=1.7e-07 Score=70.18 Aligned_cols=57 Identities=21% Similarity=0.335 Sum_probs=33.9
Q ss_pred eccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 10 AVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 10 ~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
+.+|++++|+++||+|+++.+ +..+..++++.+++... ....+++|+||++|+|+.+
T Consensus 131 ~~l~~~~iivv~NK~Dl~~~~--~~~~~~~~i~~~l~~~~--~~~~~~i~vSA~~g~gi~~ 187 (408)
T 1s0u_A 131 EILGIDKIIIVQNKIDLVDEK--QAEENYEQIKEFVKGTI--AENAPIIPISAHHEANIDV 187 (408)
T ss_dssp HHTTCCCEEEEEECTTSSCTT--TTTTHHHHHHHHHTTST--TTTCCEEEC------CHHH
T ss_pred HHcCCCeEEEEEEccCCCCHH--HHHHHHHHHHHHHhhcC--CCCCeEEEeeCCCCCCHHH
Confidence 458999999999999998632 22223344555554332 2457999999999999854
No 16
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.23 E-value=6.6e-07 Score=67.83 Aligned_cols=53 Identities=19% Similarity=0.275 Sum_probs=41.4
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
+++|+|+||+|+++..+...+++.+.++..+...++ .+++++||++|.|+.+.
T Consensus 307 ~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~SA~~g~gv~~l 359 (456)
T 4dcu_A 307 KAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDY----APILFMSALTKKRIHTL 359 (456)
T ss_dssp CEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTT----SCEEECCTTTCTTGGGH
T ss_pred CCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCC----CCEEEEcCCCCcCHHHH
Confidence 579999999999875555667777777766654443 79999999999999764
No 17
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.16 E-value=1.2e-06 Score=65.34 Aligned_cols=57 Identities=14% Similarity=0.124 Sum_probs=44.1
Q ss_pred eeccCCCeEEEEEE-cCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEE--eeecc---CCCCCC
Q psy15201 9 SAVSGVNQLGVVIN-KLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVP--CSGLT---GENLTT 70 (97)
Q Consensus 9 ~~~lGvk~~Iv~IN-K~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iip--iSA~~---G~ni~~ 70 (97)
++.+|++.+|+++| |||+ + .+.++++.++++.+++..++ ...+++| +||++ |.|+.+
T Consensus 107 ~~~~~i~~~ivvvNNK~Dl-~--~~~~~~~~~~i~~~l~~~~~--~~~~ii~~~~SA~~~~~g~gi~~ 169 (370)
T 2elf_A 107 LDLLGFKHGIIALTRSDST-H--MHAIDELKAKLKVITSGTVL--QDWECISLNTNKSAKNPFEGVDE 169 (370)
T ss_dssp HHHTTCCEEEEEECCGGGS-C--HHHHHHHHHHHHHHTTTSTT--TTCEEEECCCCTTSSSTTTTHHH
T ss_pred HHHcCCCeEEEEEEeccCC-C--HHHHHHHHHHHHHHHHhcCC--CceEEEecccccccCcCCCCHHH
Confidence 35679988899999 9999 4 55667777888888765544 4589999 99999 777643
No 18
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.08 E-value=2.4e-06 Score=64.45 Aligned_cols=53 Identities=19% Similarity=0.225 Sum_probs=39.2
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
+++|+|+||+|+++.++...+++.+++...+.... ..+++++||++|.|+.+.
T Consensus 287 ~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~SA~tg~~v~~l 339 (436)
T 2hjg_A 287 KAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLD----YAPILFMSALTKKRIHTL 339 (436)
T ss_dssp CEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGT----TSCEEECCTTTCTTGGGH
T ss_pred CcEEEEEECccCCCcchHHHHHHHHHHHHhcccCC----CCCEEEEecccCCCHHHH
Confidence 57999999999986444445556666655554333 379999999999999775
No 19
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.05 E-value=2.4e-06 Score=55.95 Aligned_cols=50 Identities=20% Similarity=0.391 Sum_probs=36.7
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
.++|+++||+|+.+ ++......++++.+++..+ ..+++++||.+|.|+.+
T Consensus 134 ~p~i~v~nK~Dl~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~gv~~ 183 (195)
T 3pqc_A 134 IPFTIVLTKMDKVK--MSERAKKLEEHRKVFSKYG----EYTIIPTSSVTGEGISE 183 (195)
T ss_dssp CCEEEEEECGGGSC--GGGHHHHHHHHHHHHHSSC----CSCEEECCTTTCTTHHH
T ss_pred CCEEEEEEChhcCC--hHHHHHHHHHHHHHHhhcC----CCceEEEecCCCCCHHH
Confidence 47899999999985 3344455566666665433 36999999999999865
No 20
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.01 E-value=6.7e-06 Score=55.38 Aligned_cols=54 Identities=13% Similarity=0.197 Sum_probs=35.9
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHh---CCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQA---GFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~---~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|+++||+|+.+ .....+..+++...+... +. ....+++++||++|.|+.+.
T Consensus 145 ~p~i~v~nK~Dl~~--~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~SA~~g~gv~~l 201 (223)
T 4dhe_A 145 KPIHSLLTKCDKLT--RQESINALRATQKSLDAYRDAGY-AGKLTVQLFSALKRTGLDDA 201 (223)
T ss_dssp CCEEEEEECGGGSC--HHHHHHHHHHHHHHHHHHHHHTC-CSCEEEEEEBTTTTBSHHHH
T ss_pred CCEEEEEeccccCC--hhhHHHHHHHHHHHHHhhhhccc-CCCCeEEEeecCCCcCHHHH
Confidence 46899999999985 444444444444444332 11 12479999999999998653
No 21
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.74 E-value=1.4e-05 Score=52.46 Aligned_cols=50 Identities=16% Similarity=0.199 Sum_probs=33.7
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
.++++++||+|+.+ +....+..+++...+. . ....+++++||.+|.|+.+
T Consensus 135 ~p~i~v~nK~Dl~~--~~~~~~~~~~~~~~~~---~-~~~~~~~~~Sa~~~~gv~~ 184 (195)
T 1svi_A 135 IPVIVIATKADKIP--KGKWDKHAKVVRQTLN---I-DPEDELILFSSETKKGKDE 184 (195)
T ss_dssp CCEEEEEECGGGSC--GGGHHHHHHHHHHHHT---C-CTTSEEEECCTTTCTTHHH
T ss_pred CCEEEEEECcccCC--hHHHHHHHHHHHHHHc---c-cCCCceEEEEccCCCCHHH
Confidence 47899999999985 2223333444444332 1 1247999999999999865
No 22
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.73 E-value=2.9e-05 Score=57.11 Aligned_cols=54 Identities=20% Similarity=0.163 Sum_probs=38.0
Q ss_pred eEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCC--CceEEEeeeccCCCCCCC
Q psy15201 16 QLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDS--DIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 16 ~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~--~~~iipiSA~~G~ni~~~ 71 (97)
+.|+++||+|+.+ ....+...+++...+........ ..+++++||++|.|+.+.
T Consensus 219 p~ivVlNK~Dl~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L 274 (355)
T 3p32_A 219 ADIVVVNKADGEH--HKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAEL 274 (355)
T ss_dssp CSEEEEECCCGGG--HHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHH
T ss_pred CCEEEEECCCCcC--hhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHH
Confidence 6899999999873 44555566666666554432111 368999999999999654
No 23
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=97.67 E-value=3e-05 Score=52.03 Aligned_cols=52 Identities=29% Similarity=0.403 Sum_probs=34.7
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHH---------HHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIV---------TKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~---------~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
-.++|+++||+|+.+ .....+.+. ++...+.+..++ .+++++||++|.|+.+
T Consensus 134 ~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~SA~~g~gi~~ 194 (204)
T 4gzl_A 134 NTPIILVGTKLDLRD-DKDTIEKLKEKKLTPITYPQGLAMAKEIGA----VKYLECSALTQRGLKT 194 (204)
T ss_dssp SCCEEEEEECHHHHT-CHHHHHHHHHTTCCCCCHHHHHHHHHHTTC----SEEEECCTTTCTTHHH
T ss_pred CCCEEEEEechhhcc-chhhhhhhhccccccccHHHHHHHHHhcCC----cEEEEeeCCCCCCHHH
Confidence 357999999999876 233222221 233445555554 5899999999999865
No 24
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=97.67 E-value=3.1e-05 Score=50.13 Aligned_cols=53 Identities=28% Similarity=0.384 Sum_probs=34.6
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHH---------HHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIV---------TKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~---------~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++|+++||+|+.+ .....+.+. ++...+.+..++ .+++++||.+|.|+.+.
T Consensus 109 ~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~g~gi~~l 170 (186)
T 1mh1_A 109 NTPIILVGTKLDLRD-DKDTIEKLKEKKLTPITYPQGLAMAKEIGA----VKYLECSALTQRGLKTV 170 (186)
T ss_dssp TSCEEEEEECHHHHT-CHHHHHHHHHTTCCCCCHHHHHHHHHHTTC----SEEEECCTTTCTTHHHH
T ss_pred CCCEEEEeEcccccc-cchhhhhhcccccccCCHHHHHHHHHhcCC----cEEEEecCCCccCHHHH
Confidence 457999999999875 233222221 233344444443 58999999999998653
No 25
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.63 E-value=1.7e-05 Score=59.78 Aligned_cols=53 Identities=23% Similarity=0.154 Sum_probs=35.1
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
+++|+++||+|+.+.++...+++.+++...+.... ..+++++||++|.|+.+.
T Consensus 293 ~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~SA~~g~gv~~l 345 (439)
T 1mky_A 293 RASVVVFNKWDLVVHREKRYDEFTKLFREKLYFID----YSPLIFTSADKGWNIDRM 345 (439)
T ss_dssp CEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGT----TSCEEECBTTTTBSHHHH
T ss_pred CCEEEEEECccCCCchhhHHHHHHHHHHHHhccCC----CCcEEEEECCCCCCHHHH
Confidence 57999999999985322223444444443333222 378999999999998654
No 26
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=97.63 E-value=8.5e-05 Score=49.47 Aligned_cols=52 Identities=19% Similarity=0.199 Sum_probs=34.7
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHH---------HHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEI---------VTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i---------~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
-.++++++||+|+.+ .....+.+ .++...+.+..++ .+++++||.+|.|+.+
T Consensus 129 ~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~SA~~g~gi~~ 189 (201)
T 2gco_A 129 NVPIILVGNKKDLRQ-DEHTRRELAKMKQEPVRSEEGRDMANRISA----FGYLECSAKTKEGVRE 189 (201)
T ss_dssp TCCEEEEEECGGGTT-CHHHHHHHHTTTCCCCCHHHHHHHHHHTTC----SEEEECCTTTCTTHHH
T ss_pred CCCEEEEEecHHhhc-CccchhhhcccccCcCCHHHHHHHHHhCCC----cEEEEeeCCCCCCHHH
Confidence 357999999999986 33322222 1234445555443 4899999999999865
No 27
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.61 E-value=0.00011 Score=48.33 Aligned_cols=52 Identities=23% Similarity=0.312 Sum_probs=34.6
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHH---------HHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEI---------VTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i---------~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
-.++|+++||+|+.+ .....+.+ .++...+.+..++ .+++++||++|.|+.+
T Consensus 122 ~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~g~gi~~ 182 (194)
T 2atx_A 122 NVPFLLIGTQIDLRD-DPKTLARLNDMKEKPICVEQGQKLAKEIGA----CCYVECSALTQKGLKT 182 (194)
T ss_dssp TCCEEEEEECTTSTT-CHHHHHHHTTTTCCCCCHHHHHHHHHHHTC----SCEEECCTTTCTTHHH
T ss_pred CCCEEEEEEChhhcc-cccchhhcccccCcccCHHHHHHHHHHcCC----cEEEEeeCCCCCCHHH
Confidence 357999999999986 22211111 2344455555554 4899999999999865
No 28
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.59 E-value=4e-05 Score=56.96 Aligned_cols=57 Identities=19% Similarity=0.197 Sum_probs=39.8
Q ss_pred cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
++-+++|+++||+|+.+. +...+++.+.++.+.+..++. ..+++++||.+|.|+.+.
T Consensus 94 ~~~~p~ilV~NK~DL~~~-~~~~~~~~~~l~~~~~~~g~~--~~~v~~iSA~~g~gi~~L 150 (368)
T 3h2y_A 94 VGNNKVLLVGNKADLIPK-SVKHDKVKHWMRYSAKQLGLK--PEDVFLISAAKGQGIAEL 150 (368)
T ss_dssp SSSSCEEEEEECGGGSCT-TSCHHHHHHHHHHHHHHTTCC--CSEEEECCTTTCTTHHHH
T ss_pred hCCCcEEEEEEChhcCCc-ccCHHHHHHHHHHHHHHcCCC--cccEEEEeCCCCcCHHHH
Confidence 456789999999999862 222334445555666666652 247999999999998653
No 29
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.58 E-value=4.8e-05 Score=56.49 Aligned_cols=58 Identities=14% Similarity=0.216 Sum_probs=40.3
Q ss_pred ccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 11 VSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 11 ~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++-+++|+++||+|+.+. +...+++++.+..+++..++. ..+++++||.+|.|+.+.
T Consensus 95 ~l~~~piilV~NK~DLl~~-~~~~~~~~~~l~~~~~~~g~~--~~~v~~iSA~~g~gi~~L 152 (369)
T 3ec1_A 95 FAADNPILLVGNKADLLPR-SVKYPKLLRWMRRMAEELGLC--PVDVCLVSAAKGIGMAKV 152 (369)
T ss_dssp HCTTSCEEEEEECGGGSCT-TCCHHHHHHHHHHHHHTTTCC--CSEEEECBTTTTBTHHHH
T ss_pred HhCCCCEEEEEEChhcCCC-ccCHHHHHHHHHHHHHHcCCC--cccEEEEECCCCCCHHHH
Confidence 3567889999999999862 222234445556666666652 247899999999998643
No 30
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=97.57 E-value=2.5e-05 Score=53.23 Aligned_cols=54 Identities=17% Similarity=0.208 Sum_probs=34.4
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++|+++||+|+.+. .....+..+.++.+.+..+ ...+++++||.+|.|+.+.
T Consensus 142 ~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~SA~~g~gi~~l 195 (228)
T 2qu8_A 142 NKSIVIGFNKIDKCNM-DSLSIDNKLLIKQILDNVK---NPIKFSSFSTLTGVGVEQA 195 (228)
T ss_dssp CCCEEEEEECGGGCC---CCCHHHHHHHHHHHHHCC---SCEEEEECCTTTCTTHHHH
T ss_pred CCcEEEEEeCcccCCc-hhhHHHHHHHHHHHHHhcC---CCceEEEEecccCCCHHHH
Confidence 4579999999999751 1111222234444544433 1269999999999998654
No 31
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.54 E-value=7.2e-05 Score=47.75 Aligned_cols=52 Identities=21% Similarity=0.170 Sum_probs=32.2
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++++++||+|+.+... .+++.+ .+..........+++++||.+|.|+.+.
T Consensus 108 ~~piilv~nK~Dl~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 159 (171)
T 1upt_A 108 KAILVVFANKQDMEQAMT--SSEMAN----SLGLPALKDRKWQIFKTSATKGTGLDEA 159 (171)
T ss_dssp TCEEEEEEECTTSTTCCC--HHHHHH----HHTGGGCTTSCEEEEECCTTTCTTHHHH
T ss_pred CCEEEEEEECCCCcCCCC--HHHHHH----HhCchhccCCceEEEECcCCCCcCHHHH
Confidence 458999999999985211 122222 2211112223469999999999998653
No 32
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.54 E-value=5.7e-05 Score=48.94 Aligned_cols=52 Identities=23% Similarity=0.220 Sum_probs=32.6
Q ss_pred CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 13 GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 13 Gvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
.-.++|+++||+|+.+.. .. +++...+..........+++++||.+|.|+.+
T Consensus 118 ~~~piilv~nK~Dl~~~~--~~----~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 169 (183)
T 1moz_A 118 QDAALLVFANKQDQPGAL--SA----SEVSKELNLVELKDRSWSIVASSAIKGEGITE 169 (183)
T ss_dssp SSCEEEEEEECTTSTTCC--CH----HHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHH
T ss_pred CCCeEEEEEECCCCCCCC--CH----HHHHHHhCcccccCCceEEEEccCCCCcCHHH
Confidence 345799999999987521 11 22222222222222346899999999999865
No 33
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.51 E-value=9.4e-06 Score=52.43 Aligned_cols=50 Identities=26% Similarity=0.210 Sum_probs=31.1
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCC-C---CCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGF-R---DSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~-~---~~~~~iipiSA~~G~ni~~~ 71 (97)
.++++++||+|+.+.+.++. ...++.... . ....+++++||.+|.|+.+.
T Consensus 108 ~p~ilv~nK~Dl~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 161 (178)
T 2lkc_A 108 VPIIVAINKMDKPEANPDRV-------MQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHL 161 (178)
T ss_dssp CCEEEEEETTTSSCSCHHHH-------HHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHH
T ss_pred CCEEEEEECccCCcCCHHHH-------HHHHHhcCcChhHcCCcccEEEEecCCCCCHHHH
Confidence 36899999999986332221 222222221 1 01269999999999998653
No 34
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.49 E-value=3.8e-05 Score=50.09 Aligned_cols=49 Identities=14% Similarity=0.102 Sum_probs=33.4
Q ss_pred CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 13 GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 13 Gvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.-.++|++.||+|+.+. ...++++.+++..++ .+++++||.+|.|+.+.
T Consensus 134 ~~~piilv~NK~Dl~~~------~~~~~~~~~~~~~~~----~~~~~~Sa~~~~gv~~l 182 (198)
T 3t1o_A 134 DDVPIVIQVNKRDLPDA------LPVEMVRAVVDPEGK----FPVLEAVATEGKGVFET 182 (198)
T ss_dssp TSSCEEEEEECTTSTTC------CCHHHHHHHHCTTCC----SCEEECBGGGTBTHHHH
T ss_pred CCCCEEEEEEchhcccc------cCHHHHHHHHHhcCC----ceEEEEecCCCcCHHHH
Confidence 34579999999998752 112344455543332 38999999999998653
No 35
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=97.48 E-value=0.00013 Score=49.15 Aligned_cols=53 Identities=17% Similarity=0.223 Sum_probs=35.0
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHH---------HHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEI---------VTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i---------~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++|+++||+|+.+ .....+.+ .++...+.+..++ .+++++||.+|.|+.+.
T Consensus 138 ~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~SA~~g~gi~el 199 (214)
T 2j1l_A 138 KVPIIVVGCKTDLRK-DKSLVNKLRRNGLEPVTYHRGQEMARSVGA----VAYLECSARLHDNVHAV 199 (214)
T ss_dssp SCCEEEEEECGGGGS-CHHHHHHHHHTTCCCCCHHHHHHHHHHTTC----SEEEECBTTTTBSHHHH
T ss_pred CCCEEEEEEChhhhc-cchhhhhhcccccCcccHHHHHHHHHhcCC----CEEEEecCCCCCCHHHH
Confidence 357999999999985 23222221 1234455555443 58999999999998653
No 36
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.48 E-value=5.5e-05 Score=48.89 Aligned_cols=52 Identities=23% Similarity=0.192 Sum_probs=33.8
Q ss_pred CCeEEEEEEcCCCCCCCHHHHH-------HHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQ-------EIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~-------~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
-.++|+++||+|+.+. ..... ...++.+.+.+..++ .+++++||++|.|+.+
T Consensus 112 ~~piilv~nK~Dl~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~~~gi~~ 170 (182)
T 3bwd_D 112 GVPIVLVGTKLDLRDD-KQFFIDHPGAVPITTVQGEELKKLIGA----PAYIECSSKSQENVKG 170 (182)
T ss_dssp TCCEEEEEECHHHHTC-HHHHHHC--CCCCCHHHHHHHHHHHTC----SEEEECCTTTCTTHHH
T ss_pred CCCEEEEEechhhhcC-cccccccccCCCCCHHHHHHHHHHcCC----CEEEEEECCCCCCHHH
Confidence 3579999999998752 21100 012334445555553 5899999999999864
No 37
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.46 E-value=0.00014 Score=48.56 Aligned_cols=53 Identities=23% Similarity=0.206 Sum_probs=33.6
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHH---------HHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIV---------TKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~---------~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++|+++||+|+.+ .....+++. ++...+.+..+. .+++++||.+|.|+.+.
T Consensus 129 ~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~SA~~g~gi~el 190 (207)
T 2fv8_A 129 NVPIILVANKKDLRS-DEHVRTELARMKQEPVRTDDGRAMAVRIQA----YDYLECSAKTKEGVREV 190 (207)
T ss_dssp TCCEEEEEECGGGGG-CHHHHHHHHHTTCCCCCHHHHHHHHHHTTC----SEEEECCTTTCTTHHHH
T ss_pred CCCEEEEEEchhhhc-cccchhhhhhcccCCCCHHHHHHHHHhcCC----CEEEEeeCCCCCCHHHH
Confidence 357999999999975 222222211 122334444332 48999999999998653
No 38
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.46 E-value=5.1e-05 Score=48.66 Aligned_cols=49 Identities=14% Similarity=0.019 Sum_probs=31.4
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++|+++||+|+.+..+-.. ++.+.+.+..+ .+++++||.+|.|+.+.
T Consensus 111 ~~piilv~NK~Dl~~~~~v~~----~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l 159 (175)
T 2nzj_A 111 HVPIILVGNKADLARCREVSV----EEGRACAVVFD-----CKFIETSATLQHNVAEL 159 (175)
T ss_dssp -CCEEEEEECTTCTTTCCSCH----HHHHHHHHHHT-----SEEEECBTTTTBSHHHH
T ss_pred CCCEEEEEEChhhccccccCH----HHHHHHHHHcC-----CeEEEEecCCCCCHHHH
Confidence 357999999999975211111 12233333334 58999999999998653
No 39
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.45 E-value=9.4e-05 Score=48.45 Aligned_cols=53 Identities=26% Similarity=0.370 Sum_probs=33.2
Q ss_pred CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 13 GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 13 Gvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.-.++|+++||+|+.+.. ..+ ++...+....+.....+++++||.+|.|+.+.
T Consensus 116 ~~~piilv~NK~Dl~~~~--~~~----~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 168 (187)
T 1zj6_A 116 RKAGLLIFANKQDVKECM--TVA----EISQFLKLTSIKDHQWHIQACCALTGEGLCQG 168 (187)
T ss_dssp TTCEEEEEEECTTSTTCC--CHH----HHHHHHTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred CCCeEEEEEECCCCcCCC--CHH----HHHHHhChhhhcCCCcEEEEccCCCCcCHHHH
Confidence 346899999999997521 112 22222322112223479999999999998653
No 40
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.45 E-value=0.00014 Score=52.46 Aligned_cols=49 Identities=22% Similarity=0.369 Sum_probs=33.4
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.+.|+++||+|+++ +...+. .++...+++..+ .+++++||.+|.|+.+.
T Consensus 111 ~~~ilV~NK~DL~~--~~~v~~-~~~~~~~~~~~g-----~~~~~~SA~~g~gi~~L 159 (302)
T 2yv5_A 111 VEPVIVFNKIDLLN--EEEKKE-LERWISIYRDAG-----YDVLKVSAKTGEGIDEL 159 (302)
T ss_dssp CEEEEEECCGGGCC--HHHHHH-HHHHHHHHHHTT-----CEEEECCTTTCTTHHHH
T ss_pred CCEEEEEEcccCCC--ccccHH-HHHHHHHHHHCC-----CeEEEEECCCCCCHHHH
Confidence 46799999999985 321111 233444555555 48999999999999664
No 41
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.45 E-value=3.1e-05 Score=49.01 Aligned_cols=48 Identities=25% Similarity=0.113 Sum_probs=32.1
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
-.++++++||+|+.+..+.. .++.+.+.+..+ .+++++||.+|.|+.+
T Consensus 109 ~~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 156 (168)
T 1u8z_A 109 NVPFLLVGNKSDLEDKRQVS----VEEAKNRADQWN-----VNYVETSAKTRANVDK 156 (168)
T ss_dssp TSCEEEEEECGGGGGGCCSC----HHHHHHHHHHHT-----CEEEECCTTTCTTHHH
T ss_pred CCcEEEEEECccccccCccC----HHHHHHHHHHcC-----CeEEEeCCCCCCCHHH
Confidence 35799999999987421111 123344444444 4899999999999865
No 42
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=97.44 E-value=0.00013 Score=57.50 Aligned_cols=62 Identities=26% Similarity=0.462 Sum_probs=38.7
Q ss_pred eeccCCCeEEEEEEcCCCCC-CC---------------H---HHHHHHHHHHHHHHHHhCCC----------CCCceEEE
Q psy15201 9 SAVSGVNQLGVVINKLDTVS-WS---------------Q---DRFQEIVTKLGAFLKQAGFR----------DSDIEYVP 59 (97)
Q Consensus 9 ~~~lGvk~~Iv~INK~D~v~-~~---------------~---~~~~~i~~~l~~~l~~~~~~----------~~~~~iip 59 (97)
++..++ ++|+++||+|+.+ |. + +.+.+...++...+...++. ...++++|
T Consensus 118 l~~~~v-PiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~ 196 (594)
T 1g7s_A 118 LRMYRT-PFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIP 196 (594)
T ss_dssp HHHTTC-CEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEE
T ss_pred HHHcCC-eEEEEecccccccccccccCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEE
Confidence 344566 5899999999874 32 1 22333333444444443432 23469999
Q ss_pred eeeccCCCCCCC
Q psy15201 60 CSGLTGENLTTP 71 (97)
Q Consensus 60 iSA~~G~ni~~~ 71 (97)
+||++|.|+.+.
T Consensus 197 vSA~tG~GI~eL 208 (594)
T 1g7s_A 197 ISAITGEGIPEL 208 (594)
T ss_dssp CCTTTCTTHHHH
T ss_pred EeccCCCCchhH
Confidence 999999998654
No 43
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.43 E-value=4.8e-05 Score=48.48 Aligned_cols=47 Identities=19% Similarity=0.074 Sum_probs=31.0
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
.++|++.||+|+.+..+-. .++.+.+.+..+ .+++++||.+|.|+.+
T Consensus 107 ~p~ilv~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 153 (166)
T 3q72_A 107 VPIILVGNKSDLVRSREVS----VDEGRACAVVFD-----CKFIETSAALHHNVQA 153 (166)
T ss_dssp CCEEEEEECTTCCSSCCSC----HHHHHHHHHHTT-----CEEEECBGGGTBSHHH
T ss_pred CCEEEEEeccccccccccC----HHHHHHHHHHhC-----CcEEEeccCCCCCHHH
Confidence 5789999999987521111 122233333333 5999999999999865
No 44
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=97.42 E-value=0.0001 Score=48.39 Aligned_cols=52 Identities=17% Similarity=0.153 Sum_probs=32.7
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++|+++||+|+.+. ...+ ++...++...+.....+++++||.+|.|+.+.
T Consensus 126 ~~piilv~nK~Dl~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 177 (190)
T 2h57_A 126 RIPILFFANKMDLRDA--VTSV----KVSQLLCLENIKDKPWHICASDAIKGEGLQEG 177 (190)
T ss_dssp CCCEEEEEECTTSTTC--CCHH----HHHHHHTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred CCeEEEEEeCcCcccC--CCHH----HHHHHhChhhccCCceEEEEccCCCCcCHHHH
Confidence 3579999999999752 1112 22333321122223579999999999998653
No 45
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.42 E-value=2.6e-05 Score=51.47 Aligned_cols=52 Identities=15% Similarity=0.134 Sum_probs=34.3
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++|+++||+|+.+.... ....++.+.+.+..++ .+++++||.+|.|+.+.
T Consensus 127 ~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~gi~~l 178 (194)
T 3reg_A 127 TAKTVLVGLKVDLRKDGSD--DVTKQEGDDLCQKLGC----VAYIEASSVAKIGLNEV 178 (194)
T ss_dssp TSEEEEEEECGGGCCTTTT--CCCHHHHHHHHHHHTC----SCEEECBTTTTBSHHHH
T ss_pred CCCEEEEEEChhhccCCCC--cccHHHHHHHHHhcCC----CEEEEeecCCCCCHHHH
Confidence 4689999999998742111 1112344555555565 34999999999998653
No 46
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.40 E-value=9.4e-05 Score=48.55 Aligned_cols=52 Identities=25% Similarity=0.287 Sum_probs=32.1
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.+++++.||+|+.+... .++ +...+..........+++++||.+|.|+.+.
T Consensus 117 ~~piilv~NK~Dl~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 168 (181)
T 1fzq_A 117 CVPVLIFANKQDLLTAAP--ASE----IAEGLNLHTIRDRVWQIQSCSALTGEGVQDG 168 (181)
T ss_dssp TCCEEEEEECTTSTTCCC--HHH----HHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred CCCEEEEEECcCcccCCC--HHH----HHHHhCchhccCCceEEEEccCCCCCCHHHH
Confidence 457999999999975211 122 2222211112223478999999999998653
No 47
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=97.40 E-value=0.00014 Score=47.29 Aligned_cols=50 Identities=22% Similarity=0.230 Sum_probs=32.6
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCC--CceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDS--DIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~--~~~iipiSA~~G~ni~~~ 71 (97)
.++++++||+|+.+. . .+..+.+.+..+.+.. ..+++++||++|.|+.+.
T Consensus 123 ~piilv~nK~Dl~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 174 (190)
T 2cxx_A 123 IPTIVAVNKLDKIKN-V------QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERL 174 (190)
T ss_dssp CCEEEEEECGGGCSC-H------HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHH
T ss_pred CceEEEeehHhccCc-H------HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHH
Confidence 468999999999862 2 1223334444454100 247899999999998653
No 48
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=97.40 E-value=0.00011 Score=48.23 Aligned_cols=53 Identities=19% Similarity=0.189 Sum_probs=32.3
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++|+++||+|+.+. ...+++.+.+.... . ......+++++||++|.|+.+.
T Consensus 127 ~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~--~-~~~~~~~~~~~Sa~~g~gv~~l 179 (199)
T 4bas_A 127 RVPFLFFANKMDAAGA--KTAAELVEILDLTT--L-MGDHPFVIFASNGLKGTGVHEG 179 (199)
T ss_dssp BCCEEEEEECTTSTTC--CCHHHHHHHHTHHH--H-HTTSCEEEEECBTTTTBTHHHH
T ss_pred CCCEEEEEECcCCCCC--CCHHHHHHHhcchh--h-ccCCeeEEEEeeCCCccCHHHH
Confidence 4579999999999852 11222222222110 0 0113479999999999998653
No 49
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=97.39 E-value=0.00011 Score=48.17 Aligned_cols=52 Identities=23% Similarity=0.167 Sum_probs=32.1
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++|+++||+|+.+... .+++ ...+..........+++++||.+|.|+.+.
T Consensus 123 ~~piilv~nK~Dl~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 174 (189)
T 2x77_A 123 KSLLLIFANKQDLPDAAS--EAEI----AEQLGVSSIMNRTWTIVKSSSKTGDGLVEG 174 (189)
T ss_dssp TCEEEEEEECTTSTTCCC--HHHH----HHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred CCeEEEEEECCCCcCCCC--HHHH----HHHhChhhccCCceEEEEccCCCccCHHHH
Confidence 457999999999975211 1222 222211112223469999999999998653
No 50
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=97.39 E-value=0.00011 Score=47.91 Aligned_cols=52 Identities=23% Similarity=0.234 Sum_probs=32.4
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++|+++||+|+.+.. ..++ +...+..........+++++||.+|.|+.+.
T Consensus 119 ~~piilv~nK~Dl~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 170 (186)
T 1ksh_A 119 GATLLIFANKQDLPGAL--SCNA----IQEALELDSIRSHHWRIQGCSAVTGEDLLPG 170 (186)
T ss_dssp TCEEEEEEECTTSTTCC--CHHH----HHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred CCcEEEEEeCccCCCCC--CHHH----HHHHhChhhccCCceEEEEeeCCCCCCHHHH
Confidence 36899999999997521 1122 2222211112223579999999999998653
No 51
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=97.39 E-value=0.0001 Score=48.16 Aligned_cols=52 Identities=27% Similarity=0.387 Sum_probs=32.0
Q ss_pred CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 13 GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 13 Gvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
.-.++|+++||+|+.+.. ..+ ++...+..........+++++||.+|.|+.+
T Consensus 121 ~~~piilv~NK~Dl~~~~--~~~----~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 172 (181)
T 2h17_A 121 RKAGLLIFANKQDVKECM--TVA----EISQFLKLTSIKDHQWHIQACCALTGEGLCQ 172 (181)
T ss_dssp TTCEEEEEEECTTSTTCC--CHH----HHHHHTTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred CCCeEEEEEECCCcccCC--CHH----HHHHHhCcccccCCceEEEEccCCCCcCHHH
Confidence 346799999999997521 111 2222221111222346999999999999854
No 52
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.38 E-value=4e-05 Score=48.69 Aligned_cols=49 Identities=14% Similarity=-0.012 Sum_probs=32.1
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
-.++++++||+|+.+..+.. .++.+.+.+..+ ..+++++||.+|.|+.+
T Consensus 108 ~~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~----~~~~~~~Sa~~~~gi~~ 156 (167)
T 1c1y_A 108 DVPMILVGNKCDLEDERVVG----KEQGQNLARQWC----NCAFLESSAKSKINVNE 156 (167)
T ss_dssp CCCEEEEEECTTCGGGCCSC----HHHHHHHHHHTT----SCEEEECBTTTTBSHHH
T ss_pred CCcEEEEEECccccccccCC----HHHHHHHHHHcc----CCcEEEecCCCCCCHHH
Confidence 35789999999987411101 123334444432 36999999999999865
No 53
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.38 E-value=1.9e-05 Score=50.29 Aligned_cols=51 Identities=22% Similarity=0.248 Sum_probs=31.5
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
-.++++++||+|+.+....+ +...++.+.+.+..+ .+++++||.+|.|+.+
T Consensus 108 ~~piilv~nK~Dl~~~~~~~-~v~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 158 (170)
T 1ek0_A 108 DIIIALVGNKIDXLQEGGER-KVAREEGEKLAEEKG-----LLFFETSAKTGENVND 158 (170)
T ss_dssp TCEEEEEEECGGGGGSSCCC-CSCHHHHHHHHHHHT-----CEEEECCTTTCTTHHH
T ss_pred CCcEEEEEECCCcccccccc-CCCHHHHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 35789999999987421000 001122333444444 5899999999999865
No 54
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.38 E-value=5.6e-05 Score=49.87 Aligned_cols=49 Identities=24% Similarity=0.104 Sum_probs=32.8
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++|+++||+|+.+..+.. .+++..+.+..+ .+++++||.+|.|+.+.
T Consensus 119 ~~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l 167 (206)
T 2bov_A 119 NVPFLLVGNKSDLEDKRQVS----VEEAKNRAEQWN-----VNYVETSAKTRANVDKV 167 (206)
T ss_dssp CCCEEEEEECTTCGGGCCSC----HHHHHHHHHHHT-----CEEEEECTTTCTTHHHH
T ss_pred CCCEEEEEeccCcccccccc----HHHHHHHHHHhC-----CeEEEEeCCCCCCHHHH
Confidence 35789999999987421111 123344444444 48999999999998653
No 55
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=97.38 E-value=7.9e-05 Score=49.93 Aligned_cols=48 Identities=25% Similarity=0.302 Sum_probs=30.2
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|+++||+|+.+. ... ..+....+.+. ...+++++||++|.|+.+.
T Consensus 118 ~piilv~nK~Dl~~~--~~~--~~~~~~~~~~~-----~~~~~~~~Sa~~g~gv~~l 165 (218)
T 4djt_A 118 APIVVCANKIDIKNR--QKI--SKKLVMEVLKG-----KNYEYFEISAKTAHNFGLP 165 (218)
T ss_dssp SCEEEEEECTTCC------C--CHHHHHHHTTT-----CCCEEEEEBTTTTBTTTHH
T ss_pred CCEEEEEECCCCccc--ccc--CHHHHHHHHHH-----cCCcEEEEecCCCCCHHHH
Confidence 579999999999741 111 11222233322 2368999999999998654
No 56
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.37 E-value=0.00011 Score=47.52 Aligned_cols=47 Identities=19% Similarity=0.190 Sum_probs=31.5
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|+++||+|+.+. +.. .++.+.+.+..+ .+++++||.+|.|+.+.
T Consensus 110 ~p~i~v~nK~Dl~~~-~~~----~~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l 156 (189)
T 4dsu_A 110 VPMVLVGNKCDLPSR-TVD----TKQAQDLARSYG-----IPFIETSAKTRQGVDDA 156 (189)
T ss_dssp CCEEEEEECTTSSSC-SSC----HHHHHHHHHHHT-----CCEEECCTTTCTTHHHH
T ss_pred CcEEEEEECccCccc-ccC----HHHHHHHHHHcC-----CeEEEEeCCCCCCHHHH
Confidence 579999999998742 111 122333344444 48999999999998653
No 57
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=97.37 E-value=0.00011 Score=46.61 Aligned_cols=51 Identities=22% Similarity=0.112 Sum_probs=31.4
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
-.+++++.||+|+.+.. ..+++ ...+..........+++++||.+|.|+.+
T Consensus 101 ~~piilv~nK~Dl~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 151 (164)
T 1r8s_A 101 DAVLLVFANKQDLPNAM--NAAEI----TDKLGLHSLRHRNWYIQATCATSGDGLYE 151 (164)
T ss_dssp TCEEEEEEECTTSTTCC--CHHHH----HHHTTGGGCSSCCEEEEECBTTTTBTHHH
T ss_pred CCeEEEEEECcCCcCCC--CHHHH----HHHhCcccccCccEEEEEcccCCCcCHHH
Confidence 45899999999997521 11222 22121111222347899999999999865
No 58
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.36 E-value=5e-05 Score=48.75 Aligned_cols=47 Identities=21% Similarity=0.280 Sum_probs=31.9
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
.++++++||+|+.+..+.. .++++.+.+..+ .+++++||.+|.|+.+
T Consensus 121 ~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 167 (179)
T 1z0f_A 121 TVIILIGNKADLEAQRDVT----YEEAKQFAEENG-----LLFLEASAKTGENVED 167 (179)
T ss_dssp CEEEEEEECTTCGGGCCSC----HHHHHHHHHHTT-----CEEEECCTTTCTTHHH
T ss_pred CcEEEEEECcccccccccC----HHHHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 4799999999986411111 133444455444 5899999999999864
No 59
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=97.36 E-value=5.3e-05 Score=54.67 Aligned_cols=50 Identities=30% Similarity=0.411 Sum_probs=32.4
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|+++||+|+++ +.+...+..++ +.+..+ ...+++|+||.+|.|+.+.
T Consensus 123 ~pvilV~NK~Dl~~-~~~~~~~~~~~---l~~~~~---~~~~i~~vSA~~g~gv~~L 172 (308)
T 3iev_A 123 KPVIVVINKIDKIG-PAKNVLPLIDE---IHKKHP---ELTEIVPISALKGANLDEL 172 (308)
T ss_dssp CCEEEEEECGGGSS-SGGGGHHHHHH---HHHHCT---TCCCEEECBTTTTBSHHHH
T ss_pred CCEEEEEECccCCC-CHHHHHHHHHH---HHHhcc---CCCeEEEEeCCCCCCHHHH
Confidence 47999999999983 12222222222 333332 2368999999999998654
No 60
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=97.36 E-value=0.00014 Score=48.59 Aligned_cols=14 Identities=29% Similarity=0.221 Sum_probs=12.4
Q ss_pred CeEEEEEEcCCCCC
Q psy15201 15 NQLGVVINKLDTVS 28 (97)
Q Consensus 15 k~~Iv~INK~D~v~ 28 (97)
.++|+++||+|+.+
T Consensus 116 ~piilv~nK~Dl~~ 129 (214)
T 2fh5_B 116 PSLLIACNKQDIAM 129 (214)
T ss_dssp CEEEEEEECTTSTT
T ss_pred CCEEEEEECCCCCC
Confidence 57999999999985
No 61
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.35 E-value=0.00014 Score=45.73 Aligned_cols=46 Identities=20% Similarity=0.208 Sum_probs=31.4
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
.++++++||+|+.+. +.. .++.+.+.+..+ .+++++||.+|.|+.+
T Consensus 109 ~p~iiv~nK~Dl~~~-~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 154 (166)
T 2ce2_X 109 VPMVLVGNKSDLAAR-TVE----SRQAQDLARSYG-----IPYIETSAKTRQGVED 154 (166)
T ss_dssp CCEEEEEECTTCSCC-CSC----HHHHHHHHHHHT-----CCEEEECTTTCTTHHH
T ss_pred CcEEEEEEchhhhhc-ccC----HHHHHHHHHHcC-----CeEEEecCCCCCCHHH
Confidence 578999999998751 111 123334444444 4899999999999854
No 62
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.33 E-value=8.9e-05 Score=47.84 Aligned_cols=49 Identities=14% Similarity=0.161 Sum_probs=32.7
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++++++||+|+.+..+-. .++++.+.+..+ .+++++||++|.|+.+.
T Consensus 117 ~~p~i~v~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l 165 (181)
T 2efe_B 117 NMVMALAGNKSDLLDARKVT----AEDAQTYAQENG-----LFFMETSAKTATNVKEI 165 (181)
T ss_dssp TCEEEEEEECTTCTTTCCSC----HHHHHHHHHHTT-----CEEEECCSSSCTTHHHH
T ss_pred CCcEEEEEECCcccccccCC----HHHHHHHHHHcC-----CEEEEEECCCCCCHHHH
Confidence 35799999999997521111 123344444444 58999999999998653
No 63
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.33 E-value=4.1e-05 Score=49.48 Aligned_cols=49 Identities=24% Similarity=0.104 Sum_probs=32.6
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++|+++||+|+.+..+.. .++++.+.+..+ .+++++||.+|.|+.+.
T Consensus 123 ~~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l 171 (187)
T 2a9k_A 123 NVPFLLVGNKSDLEDKRQVS----VEEAKNRAEQWN-----VNYVETSAKTRANVDKV 171 (187)
T ss_dssp TCCEEEEEECGGGGGGCCSC----HHHHHHHHHHTT-----CEEEECCTTTCTTHHHH
T ss_pred CCCEEEEEECccccccCccC----HHHHHHHHHHcC-----CeEEEeCCCCCCCHHHH
Confidence 35789999999986421111 233344444444 58999999999998653
No 64
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=97.33 E-value=0.00027 Score=46.63 Aligned_cols=53 Identities=19% Similarity=0.207 Sum_probs=34.1
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHH---------HHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEI---------VTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i---------~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++|++.||+|+.+ ......++ .++...+.+..++ .+++++||++|.|+.+.
T Consensus 124 ~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~g~gi~~l 185 (201)
T 2q3h_A 124 KAPIILVGTQSDLRE-DVKVLIELDKCKEKPVPEEAAKLLAEEIKA----ASYIECSALTQKNLKEV 185 (201)
T ss_dssp SSCEEEEEECGGGGG-CHHHHHHHHTTTCCCCCHHHHHHHHHHHTC----SEEEECCTTTCTTHHHH
T ss_pred CCCEEEEEECHhhhh-chhhhhhhcccccccCCHHHHHHHHHhcCC----cEEEEEecCCCCCHHHH
Confidence 357899999999875 22211111 2334444554443 58999999999998653
No 65
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.31 E-value=0.0001 Score=47.51 Aligned_cols=49 Identities=20% Similarity=0.175 Sum_probs=32.2
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++++++||+|+.+..+.. .++.+.+.+..+ .+++++||.+|.|+.+.
T Consensus 116 ~~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l 164 (180)
T 2g6b_A 116 DVALMLLGNKVDSAHERVVK----REDGEKLAKEYG-----LPFMETSAKTGLNVDLA 164 (180)
T ss_dssp TCEEEEEEECCSTTSCCCSC----HHHHHHHHHHHT-----CCEEECCTTTCTTHHHH
T ss_pred CCcEEEEEECcccCcccccC----HHHHHHHHHHcC-----CeEEEEeCCCCCCHHHH
Confidence 35799999999997521111 122333444444 48999999999998653
No 66
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.31 E-value=0.00015 Score=46.04 Aligned_cols=48 Identities=25% Similarity=0.222 Sum_probs=31.7
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++++++||+|+.+. +.. .++.+.+.+..+ .+++++||.+|.|+.+.
T Consensus 108 ~~piilv~nK~Dl~~~-~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~l 155 (170)
T 1g16_A 108 EAQLLLVGNKSDMETR-VVT----ADQGEALAKELG-----IPFIESSAKNDDNVNEI 155 (170)
T ss_dssp TCEEEEEEECTTCTTC-CSC----HHHHHHHHHHHT-----CCEEECBTTTTBSHHHH
T ss_pred CCcEEEEEECccCCcC-ccC----HHHHHHHHHHcC-----CeEEEEECCCCCCHHHH
Confidence 3579999999998531 111 122333444444 48999999999998653
No 67
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.31 E-value=0.00014 Score=47.79 Aligned_cols=52 Identities=17% Similarity=0.052 Sum_probs=31.8
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++|+++||+|+.+... .+++ ...+..........+++++||.+|.|+.+.
T Consensus 124 ~~piilv~NK~Dl~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l 175 (188)
T 1zd9_A 124 GIPVLVLGNKRDLPGALD--EKEL----IEKMNLSAIQDREICCYSISCKEKDNIDIT 175 (188)
T ss_dssp TCCEEEEEECTTSTTCCC--HHHH----HHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred CCCEEEEEECCCCccCCC--HHHH----HHHhChhhhccCCeeEEEEECCCCCCHHHH
Confidence 357999999999975211 1111 111211112223578999999999998653
No 68
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=97.31 E-value=9.1e-05 Score=49.43 Aligned_cols=53 Identities=25% Similarity=0.253 Sum_probs=34.3
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHH-----HHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQE-----IVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~-----i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++|+++||+|+.+. ...... ..++.+.+.+..+. .+++++||.+|.|+.+.
T Consensus 113 ~~piilv~nK~Dl~~~-~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~g~gi~~l 170 (212)
T 2j0v_A 113 NVPIVLVGTKLDLRDD-KGYLADHTNVITSTQGEELRKQIGA----AAYIECSSKTQQNVKAV 170 (212)
T ss_dssp TCCEEEEEECHHHHTC-HHHHHTCSSCCCHHHHHHHHHHHTC----SEEEECCTTTCTTHHHH
T ss_pred CCCEEEEEeCHHhhhC-ccccccccCCCCHHHHHHHHHHcCC----ceEEEccCCCCCCHHHH
Confidence 3579999999998752 211000 12334455555554 58999999999998653
No 69
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.29 E-value=8.3e-05 Score=47.85 Aligned_cols=50 Identities=20% Similarity=0.123 Sum_probs=32.5
Q ss_pred CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 13 GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 13 Gvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
+..++|++.||+|+.+..+-. .++.+.+.+..+ .+++++||.+|.|+.+.
T Consensus 114 ~~~~iilv~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l 163 (178)
T 2hxs_A 114 TQPLVALVGNKIDLEHMRTIK----PEKHLRFCQENG-----FSSHFVSAKTGDSVFLC 163 (178)
T ss_dssp CCCEEEEEEECGGGGGGCSSC----HHHHHHHHHHHT-----CEEEEECTTTCTTHHHH
T ss_pred CCCeEEEEEEccccccccccC----HHHHHHHHHHcC-----CcEEEEeCCCCCCHHHH
Confidence 455689999999986411100 122334444444 58999999999998653
No 70
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.29 E-value=0.00035 Score=51.08 Aligned_cols=54 Identities=17% Similarity=0.087 Sum_probs=35.6
Q ss_pred eEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCC--CceEEEeeeccCCCCCCC
Q psy15201 16 QLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDS--DIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 16 ~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~--~~~iipiSA~~G~ni~~~ 71 (97)
+.++++||+|+.+ ...+....++++..+...+.... ..+++|+||++|.|+.+.
T Consensus 196 p~ivv~NK~Dl~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L 251 (341)
T 2p67_A 196 ADLIVINKDDGDN--HTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEI 251 (341)
T ss_dssp CSEEEECCCCTTC--HHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHH
T ss_pred cCEEEEECCCCCC--hHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHH
Confidence 4689999999974 33455444555555544321001 358999999999998654
No 71
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.29 E-value=0.00018 Score=46.23 Aligned_cols=49 Identities=20% Similarity=0.258 Sum_probs=31.7
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++++++||+|+.+. +.. .++++.+.+... ..+++++||.+|.|+.+.
T Consensus 116 ~~p~i~v~nK~Dl~~~-~~~----~~~~~~~~~~~~----~~~~~~~Sa~~~~gi~~l 164 (177)
T 1wms_A 116 SFPFVILGNKIDISER-QVS----TEEAQAWCRDNG----DYPYFETSAKDATNVAAA 164 (177)
T ss_dssp TSCEEEEEECTTCSSC-SSC----HHHHHHHHHHTT----CCCEEECCTTTCTTHHHH
T ss_pred CCcEEEEEECCccccc-ccC----HHHHHHHHHhcC----CceEEEEeCCCCCCHHHH
Confidence 3478999999998741 111 122333443222 368999999999998653
No 72
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.28 E-value=9.6e-05 Score=48.35 Aligned_cols=48 Identities=21% Similarity=0.204 Sum_probs=32.0
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|+++||+|+.+..+... ++.+.+.+..+ .+++++||.+|.|+.+.
T Consensus 122 ~p~ilv~nK~Dl~~~~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~g~gv~~l 169 (196)
T 3tkl_A 122 VNKLLVGNKCDLTTKKVVDY----TTAKEFADSLG-----IPFLETSAKNATNVEQS 169 (196)
T ss_dssp CEEEEEEECTTCTTTCCSCH----HHHHHHHHHTT-----CCEEEECTTTCTTHHHH
T ss_pred CCEEEEEECcccccccccCH----HHHHHHHHHcC-----CcEEEEeCCCCCCHHHH
Confidence 47899999999875221111 22333444444 58999999999998653
No 73
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=97.27 E-value=0.00015 Score=47.90 Aligned_cols=49 Identities=18% Similarity=0.106 Sum_probs=32.6
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++|+++||+|+.+..+.. .++.+.+.+..+ .+++++||++|.|+.+.
T Consensus 113 ~~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l 161 (203)
T 1zbd_A 113 NAQVLLVGNKCDMEDERVVS----SERGRQLADHLG-----FEFFEASAKDNINVKQT 161 (203)
T ss_dssp SCEEEEEEECTTCTTSCCSC----HHHHHHHHHHHT-----CEEEECBTTTTBSSHHH
T ss_pred CCCEEEEEECcccCcccccC----HHHHHHHHHHCC-----CeEEEEECCCCCCHHHH
Confidence 45799999999997521111 122333444444 48999999999998553
No 74
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.27 E-value=5e-06 Score=64.52 Aligned_cols=56 Identities=23% Similarity=0.343 Sum_probs=34.7
Q ss_pred ceeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCC----CCCceEEEeeeccCCCCCCC
Q psy15201 8 KSAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFR----DSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 8 ~~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~----~~~~~iipiSA~~G~ni~~~ 71 (97)
+++.+|++ +|+++||+|+.+++.++. ..+ +...++. ....+++|+||++|.|+.+.
T Consensus 98 ~~~~~~vP-iIVviNKiDl~~~~~~~v---~~~----l~~~~~~~~~~~~~~~~v~vSAktG~gI~eL 157 (501)
T 1zo1_I 98 HAKAAQVP-VVVAVNKIDKPEADPDRV---KNE----LSQYGILPEEWGGESQFVHVSAKAGTGIDEL 157 (501)
T ss_dssp HHHHTTCC-EEEEEECSSSSTTCCCCT---TCC----CCCCCCCTTCCSSSCEEEECCTTTCTTCTTH
T ss_pred HHHhcCce-EEEEEEeccccccCHHHH---HHH----HHHhhhhHHHhCCCccEEEEeeeeccCcchh
Confidence 34557775 999999999986332211 111 1111111 12479999999999998664
No 75
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=97.27 E-value=0.00016 Score=47.91 Aligned_cols=51 Identities=20% Similarity=0.068 Sum_probs=31.6
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
-.++|+++||+|+.+.. ..+++ ...+..........+++++||.+|.|+.+
T Consensus 130 ~~piilv~NK~Dl~~~~--~~~~i----~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 180 (192)
T 2b6h_A 130 DAVLLVFANKQDMPNAM--PVSEL----TDKLGLQHLRSRTWYVQATCATQGTGLYD 180 (192)
T ss_dssp TCEEEEEEECTTSTTCC--CHHHH----HHHTTGGGCSSCCEEEEECBTTTTBTHHH
T ss_pred CCeEEEEEECCCCCCCC--CHHHH----HHHhCcccccCCceEEEECcCCCcCCHHH
Confidence 45899999999997521 11222 22221111222347899999999999865
No 76
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.25 E-value=8.6e-05 Score=47.14 Aligned_cols=48 Identities=17% Similarity=0.093 Sum_probs=32.1
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
-.++++++||+|+.+..+.. .++++.+.+..+ .+++++||.+|.|+.+
T Consensus 109 ~~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 156 (168)
T 1z2a_A 109 DIPTALVQNKIDLLDDSCIK----NEEAEGLAKRLK-----LRFYRTSVKEDLNVSE 156 (168)
T ss_dssp SCCEEEEEECGGGGGGCSSC----HHHHHHHHHHHT-----CEEEECBTTTTBSSHH
T ss_pred CCCEEEEEECcccCcccccC----HHHHHHHHHHcC-----CeEEEEecCCCCCHHH
Confidence 35799999999987421111 123344444444 4899999999999854
No 77
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.25 E-value=8.3e-05 Score=47.77 Aligned_cols=49 Identities=20% Similarity=0.023 Sum_probs=31.8
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++|+++||+|+.+..... .++...+.+..+ .+++++||.+|.|+.+.
T Consensus 113 ~~p~ilv~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l 161 (181)
T 3tw8_B 113 DVCRILVGNKNDDPERKVVE----TEDAYKFAGQMG-----IQLFETSAKENVNVEEM 161 (181)
T ss_dssp TSEEEEEEECTTCGGGCCSC----HHHHHHHHHHHT-----CCEEECBTTTTBSHHHH
T ss_pred CCCEEEEEECCCCchhcccC----HHHHHHHHHHcC-----CeEEEEECCCCCCHHHH
Confidence 35789999999986421111 122333444444 48999999999998653
No 78
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.25 E-value=0.00011 Score=47.76 Aligned_cols=47 Identities=19% Similarity=0.286 Sum_probs=31.5
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|+++||+|..+ .+.. .++++.+++..+ .+++++||.+|.|+.+.
T Consensus 148 ~piilv~NK~D~~~-~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l 194 (208)
T 3clv_A 148 YIIILVANKIDKNK-FQVD----ILEVQKYAQDNN-----LLFIQTSAKTGTNIKNI 194 (208)
T ss_dssp CEEEEEEECTTCC--CCSC----HHHHHHHHHHTT-----CEEEEECTTTCTTHHHH
T ss_pred CcEEEEEECCCccc-ccCC----HHHHHHHHHHcC-----CcEEEEecCCCCCHHHH
Confidence 78999999999321 1111 233444555443 59999999999998653
No 79
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.25 E-value=7.6e-05 Score=47.87 Aligned_cols=47 Identities=19% Similarity=0.089 Sum_probs=30.7
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
.++++++||+|+.+..+... ++.+.+.+..+ .+++++||.+|.|+.+
T Consensus 120 ~piilv~nK~Dl~~~~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 166 (179)
T 2y8e_A 120 VIIMLVGNKTDLSDKRQVST----EEGERKAKELN-----VMFIETSAKAGYNVKQ 166 (179)
T ss_dssp SEEEEEEECGGGGGGCCSCH----HHHHHHHHHHT-----CEEEEEBTTTTBSHHH
T ss_pred CcEEEEEECCcccccCcCCH----HHHHHHHHHcC-----CeEEEEeCCCCCCHHH
Confidence 57899999999874111111 22233334334 5899999999999854
No 80
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.24 E-value=0.0002 Score=50.55 Aligned_cols=51 Identities=14% Similarity=0.122 Sum_probs=29.7
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++|+++||+|+.. .+.....++++...++..+ .+++++||.+|+++.+.
T Consensus 144 ~~pvi~V~nK~D~~~--~~e~~~~~~~i~~~l~~~~-----i~v~~~sa~~~~~~~~l 194 (274)
T 3t5d_A 144 KVNIIPLIAKADTLT--PEECQQFKKQIMKEIQEHK-----IKIYEFPETDDEEENKL 194 (274)
T ss_dssp TSCEEEEESSGGGSC--HHHHHHHHHHHHHHHHHTT-----CCCCCC-----------
T ss_pred cCCEEEEEeccCCCC--HHHHHHHHHHHHHHHHHcC-----CeEEcCCCCCChhHHHH
Confidence 357999999999974 5566666677777666544 47888999999988654
No 81
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=97.24 E-value=0.00014 Score=47.21 Aligned_cols=48 Identities=17% Similarity=0.100 Sum_probs=27.4
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|+++||+|+.+..+-. .++.+.+.+..+ .+++++||.+|.|+.+.
T Consensus 114 ~piilv~nK~Dl~~~~~v~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l 161 (183)
T 2fu5_C 114 VEKMILGNKCDVNDKRQVS----KERGEKLALDYG-----IKFMETSAKANINVENA 161 (183)
T ss_dssp CEEEEEEEC--CCSCCCSC----HHHHHHHHHHHT-----CEEEECCC---CCHHHH
T ss_pred CCEEEEEECccCCccCcCC----HHHHHHHHHHcC-----CeEEEEeCCCCCCHHHH
Confidence 5799999999987521111 123334444444 58999999999998653
No 82
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.22 E-value=0.00011 Score=48.03 Aligned_cols=47 Identities=19% Similarity=0.187 Sum_probs=32.0
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++++++||+|+.+. +.. .++++.+.+..+ .+++++||.+|.|+.+.
T Consensus 127 ~p~ilv~nK~Dl~~~-~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l 173 (190)
T 3con_A 127 VPMVLVGNKCDLPTR-TVD----TKQAHELAKSYG-----IPFIETSAKTRQGVEDA 173 (190)
T ss_dssp CCEEEEEECTTCSCC-CSC----HHHHHHHHHHHT-----CCEEECCTTTCTTHHHH
T ss_pred CeEEEEEECCcCCcc-cCC----HHHHHHHHHHcC-----CeEEEEeCCCCCCHHHH
Confidence 579999999998751 111 123344444444 48999999999998653
No 83
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.21 E-value=7.8e-05 Score=47.61 Aligned_cols=48 Identities=13% Similarity=-0.051 Sum_probs=31.8
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
-.++|++.||+|+.+..+-. .++.+.+.+..+ .+++++||.+|.|+.+
T Consensus 109 ~~p~ilv~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~ 156 (169)
T 3q85_A 109 DLPVILVGNKSDLARSREVS----LEEGRHLAGTLS-----CKHIETSAALHHNTRE 156 (169)
T ss_dssp CCCEEEEEECTTCGGGCCSC----HHHHHHHHHHTT-----CEEEECBTTTTBSHHH
T ss_pred CCCEEEEeeCcchhhcccCC----HHHHHHHHHHcC-----CcEEEecCccCCCHHH
Confidence 35799999999987311111 123334444444 5899999999999865
No 84
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.21 E-value=0.00012 Score=47.96 Aligned_cols=47 Identities=15% Similarity=0.055 Sum_probs=31.3
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|+++||+|+.+. +.. .++...+.+..+ .+++++||.+|.|+.+.
T Consensus 115 ~piilv~nK~Dl~~~-~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l 161 (199)
T 2gf0_A 115 IPVMLVGNKCDETQR-EVD----TREAQAVAQEWK-----CAFMETSAKMNYNVKEL 161 (199)
T ss_dssp SCEEEEEECTTCSSC-SSC----HHHHHHHHHHHT-----CEEEECBTTTTBSHHHH
T ss_pred CCEEEEEECccCCcc-ccC----HHHHHHHHHHhC-----CeEEEEecCCCCCHHHH
Confidence 478999999998751 111 122233344444 48999999999998653
No 85
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.21 E-value=8.7e-05 Score=49.17 Aligned_cols=51 Identities=16% Similarity=0.070 Sum_probs=31.5
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhC-------CCCCCceEEEeeeccCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAG-------FRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~-------~~~~~~~iipiSA~~G~ni~~ 70 (97)
-.++|++.||+|+.+. ... +++...++... ......+++++||++|.|+.+
T Consensus 124 ~~piilv~NK~Dl~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 181 (190)
T 1m2o_B 124 DVPFVILGNKIDAPNA--VSE----AELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLE 181 (190)
T ss_dssp TCCEEEEEECTTSTTC--CCH----HHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHH
T ss_pred CCCEEEEEECCCCcCC--CCH----HHHHHHhCCccccccccccccceEEEEEeECCcCCCHHH
Confidence 4579999999998751 111 22233332111 011347899999999999865
No 86
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.21 E-value=0.00036 Score=50.17 Aligned_cols=49 Identities=29% Similarity=0.403 Sum_probs=32.5
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.+.|+++||+|+.. ..+.+. +.+..+.+..++ .+++|+||++|.|+.+.
T Consensus 117 ~P~ilvlNK~D~~~-~~~~~~---~~l~~l~~~~~~----~~~i~iSA~~g~~v~~l 165 (301)
T 1ega_A 117 APVILAVNKVDNVQ-EKADLL---PHLQFLASQMNF----LDIVPISAETGLNVDTI 165 (301)
T ss_dssp SCEEEEEESTTTCC-CHHHHH---HHHHHHHTTSCC----SEEEECCTTTTTTHHHH
T ss_pred CCEEEEEECcccCc-cHHHHH---HHHHHHHHhcCc----CceEEEECCCCCCHHHH
Confidence 57899999999985 233332 333333332333 48999999999998653
No 87
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=96.30 E-value=5.1e-05 Score=50.50 Aligned_cols=53 Identities=28% Similarity=0.352 Sum_probs=32.0
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHH---------HHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEI---------VTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i---------~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++|+++||+|+.+. ....+.+ .++...+.+..++ .+++++||.+|.|+.+.
T Consensus 134 ~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~vSA~~g~gi~~l 195 (204)
T 3th5_A 134 NTPIILVGTKLDLRDD-KDTIEKLKEKKLTPITYPQGLAMAKEIGA----VKYLECSALTQRGLKTV 195 (204)
Confidence 3578999999999752 1111111 1222223332222 38999999999999765
No 88
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=97.19 E-value=0.00044 Score=44.57 Aligned_cols=52 Identities=13% Similarity=-0.006 Sum_probs=31.8
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++|++.||+|+.+.++... ..++.+.+.+..+ ..+++++||.+|.|+.+.
T Consensus 108 ~~piilv~nK~Dl~~~~~~~v--~~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~~l 159 (178)
T 2iwr_A 108 GLALALVGTQDRISASSPRVV--GDARARALXADMK----RCSYYETXATYGLNVDRV 159 (178)
T ss_dssp CCEEEEEEECTTCBTTBCCCS--CHHHHHHHHHHHS----SEEEEEEBTTTTBTHHHH
T ss_pred CCCEEEEEECccccccccCcC--CHHHHHHHHHhhc----CCeEEEEeccccCCHHHH
Confidence 357999999999842111000 0122333444332 269999999999998653
No 89
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.19 E-value=7.5e-05 Score=47.62 Aligned_cols=47 Identities=15% Similarity=0.143 Sum_probs=31.6
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
.++++++||+|+.+..+.. .++.+.+.+..+ .+++++||.+|.|+.+
T Consensus 112 ~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 158 (170)
T 1z08_A 112 ICLCIVGNKIDLEKERHVS----IQEAESYAESVG-----AKHYHTSAKQNKGIEE 158 (170)
T ss_dssp SEEEEEEECGGGGGGCCSC----HHHHHHHHHHTT-----CEEEEEBTTTTBSHHH
T ss_pred CeEEEEEECcccccccccC----HHHHHHHHHHcC-----CeEEEecCCCCCCHHH
Confidence 5789999999987411111 123344444444 5899999999999865
No 90
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.19 E-value=0.00016 Score=46.88 Aligned_cols=47 Identities=17% Similarity=0.145 Sum_probs=31.5
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeec-cCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGL-TGENLTT 70 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~-~G~ni~~ 70 (97)
.++|+++||+|+.+..+.. .++.+.+.+..+ .+++++||. +|.|+.+
T Consensus 124 ~p~ilv~nK~Dl~~~~~v~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~~v~~ 171 (183)
T 3kkq_A 124 FPMILVANKVDLMHLRKVT----RDQGKEMATKYN-----IPYIETSAKDPPLNVDK 171 (183)
T ss_dssp CCEEEEEECTTCSTTCCSC----HHHHHHHHHHHT-----CCEEEEBCSSSCBSHHH
T ss_pred CcEEEEEECCCchhccCcC----HHHHHHHHHHhC-----CeEEEeccCCCCCCHHH
Confidence 4689999999987421111 123344444444 579999999 9999865
No 91
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.18 E-value=8.6e-05 Score=47.23 Aligned_cols=49 Identities=14% Similarity=0.078 Sum_probs=31.4
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++++++||+|+.+..+-. .++.+.+.+..+ .+++++||.+|.|+.+.
T Consensus 109 ~~pii~v~nK~Dl~~~~~v~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l 157 (172)
T 2erx_A 109 SIPIMLVGNKCDESPSREVQ----SSEAEALARTWK-----CAFMETSAKLNHNVKEL 157 (172)
T ss_dssp CCCEEEEEECGGGGGGCCSC----HHHHHHHHHHHT-----CEEEECBTTTTBSHHHH
T ss_pred CCCEEEEEEccccccccccC----HHHHHHHHHHhC-----CeEEEecCCCCcCHHHH
Confidence 35799999999986421100 112233333333 58999999999998653
No 92
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=97.18 E-value=0.0003 Score=45.82 Aligned_cols=48 Identities=15% Similarity=0.080 Sum_probs=31.9
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++++++||+|+.+... . .++...+.+..+ .+++++||.+|.|+.+.
T Consensus 121 ~~p~ilv~nK~Dl~~~~~-~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l 168 (195)
T 1x3s_A 121 DIVNMLVGNKIDKENREV-D----RNEGLKFARKHS-----MLFIEASAKTCDGVQCA 168 (195)
T ss_dssp CCEEEEEEECTTSSSCCS-C----HHHHHHHHHHTT-----CEEEECCTTTCTTHHHH
T ss_pred CCcEEEEEECCcCccccc-C----HHHHHHHHHHcC-----CEEEEecCCCCCCHHHH
Confidence 457899999999864211 1 122334444433 58999999999998653
No 93
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.18 E-value=0.00012 Score=47.99 Aligned_cols=49 Identities=18% Similarity=0.070 Sum_probs=32.8
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++|+++||+|+.+..+.. .++.+.+.+..+ .+++++||.+|.|+.+.
T Consensus 127 ~~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l 175 (189)
T 2gf9_A 127 NAQVILVGNKCDLEDERVVP----AEDGRRLADDLG-----FEFFEASAKENINVKQV 175 (189)
T ss_dssp TCEEEEEEECTTCGGGCCSC----HHHHHHHHHHHT-----CEEEECBTTTTBSHHHH
T ss_pred CCCEEEEEECcccccccCCC----HHHHHHHHHHcC-----CeEEEEECCCCCCHHHH
Confidence 45799999999987421101 123344445445 48999999999998653
No 94
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=97.17 E-value=0.0004 Score=45.93 Aligned_cols=55 Identities=18% Similarity=0.254 Sum_probs=33.1
Q ss_pred CCeEEEEEEcCCCCCCCHHH---HHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDR---FQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~---~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
-.++|++.||+|+++ .+.+ ..++..+....+..........+++++||++ .|+.+
T Consensus 129 ~~piilv~nK~Dl~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~ 186 (196)
T 3llu_A 129 DMNFEVFIHKVDGLS-DDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFE 186 (196)
T ss_dssp TCEEEEEEECGGGSC-HHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHH
T ss_pred CCcEEEEEeccccCc-hhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHH
Confidence 457999999999985 2222 2233333322222222212347999999999 98754
No 95
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.17 E-value=0.00049 Score=49.33 Aligned_cols=49 Identities=14% Similarity=0.252 Sum_probs=34.6
Q ss_pred ccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 11 VSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 11 ~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
.++-++.|+++||+|+++ .+. .+....+++..+ .+++++||.+|.|+.+
T Consensus 47 ~l~~kp~ilVlNK~DL~~--~~~----~~~~~~~~~~~g-----~~~i~iSA~~~~gi~~ 95 (282)
T 1puj_A 47 ILKNKPRIMLLNKADKAD--AAV----TQQWKEHFENQG-----IRSLSINSVNGQGLNQ 95 (282)
T ss_dssp HCSSSCEEEEEECGGGSC--HHH----HHHHHHHHHTTT-----CCEEECCTTTCTTGGG
T ss_pred HHCCCCEEEEEECcccCC--HHH----HHHHHHHHHhcC-----CcEEEEECCCcccHHH
Confidence 357789999999999985 322 223334444333 4789999999999865
No 96
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=97.14 E-value=0.00028 Score=51.36 Aligned_cols=52 Identities=19% Similarity=0.092 Sum_probs=32.7
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++|+++||+|+.+.. ..++ +...+..........+++++||++|.|+.+.
T Consensus 266 ~~piilV~NK~Dl~~~~--~~~~----i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el 317 (329)
T 3o47_A 266 DAVLLVFANKQDLPNAM--NAAE----ITDKLGLHSLRHRNWYIQATCATSGDGLYEG 317 (329)
T ss_dssp TCEEEEEEECTTSTTCC--CHHH----HHHHHTCTTCCSSCEEEEECBTTTTBTHHHH
T ss_pred CCeEEEEEECccCCccc--CHHH----HHHHhchhhhhcCCCEEEEEECCCCcCHHHH
Confidence 34799999999998521 1122 2222221122234579999999999998653
No 97
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.14 E-value=0.00015 Score=48.34 Aligned_cols=51 Identities=18% Similarity=0.193 Sum_probs=31.7
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhC---------CC---CCCceEEEeeeccCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAG---------FR---DSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~---------~~---~~~~~iipiSA~~G~ni~~ 70 (97)
-.++|++.||+|+.+. .. .++++.+++... +. ....+++++||++|.|+.+
T Consensus 126 ~~piilv~NK~Dl~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~ 188 (198)
T 1f6b_A 126 NVPILILGNKIDRPEA--IS----EERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGE 188 (198)
T ss_dssp TSCEEEEEECTTSTTC--CC----HHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHH
T ss_pred CCcEEEEEECCCcccc--CC----HHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHH
Confidence 3579999999998741 11 122333332111 10 1347899999999999864
No 98
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=97.14 E-value=0.0003 Score=49.74 Aligned_cols=52 Identities=29% Similarity=0.407 Sum_probs=34.2
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHH---------HHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEI---------VTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i---------~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
-.++|+++||+|+.+ .....+.+ .++...+.+..++ .+++++||++|.|+.+
T Consensus 259 ~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~~~gi~~ 319 (332)
T 2wkq_A 259 NTPIILVGTKLDLRD-DKDTIEKLKEKKLTPITYPQGLAMAKEIGA----VKYLECSALTQRGLKT 319 (332)
T ss_dssp TSCEEEEEECHHHHT-CHHHHHHHHHTTCCCCCHHHHHHHHHHTTC----SEEEECCTTTCTTHHH
T ss_pred CCcEEEEEEchhccc-ccchhhhccccccccccHHHHHHHHHHcCC----cEEEEecCCCCcCHHH
Confidence 457999999999875 22222221 1234445554443 4899999999999865
No 99
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.14 E-value=9.7e-05 Score=47.49 Aligned_cols=51 Identities=20% Similarity=0.148 Sum_probs=31.4
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++++++||+|+.+. +... ..++.+.+.+... ..+++++||.+|.|+.+.
T Consensus 118 ~~p~ilv~nK~Dl~~~-~~~v--~~~~~~~~~~~~~----~~~~~~~Sa~~~~gi~~l 168 (182)
T 1ky3_A 118 TFPFVILGNKIDAEES-KKIV--SEKSAQELAKSLG----DIPLFLTSAKNAINVDTA 168 (182)
T ss_dssp TCCEEEEEECTTSCGG-GCCS--CHHHHHHHHHHTT----SCCEEEEBTTTTBSHHHH
T ss_pred CCcEEEEEECCccccc-cccC--CHHHHHHHHHhcC----CCeEEEEecCCCCCHHHH
Confidence 3478999999998641 1000 0122333333222 368999999999998653
No 100
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.13 E-value=0.00036 Score=46.23 Aligned_cols=48 Identities=25% Similarity=0.222 Sum_probs=31.6
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++|+++||+|+.+. +.. .++...+.+..+ .+++++||.+|.|+.+.
T Consensus 125 ~~piilv~nK~Dl~~~-~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l 172 (213)
T 3cph_A 125 EAQLLLVGNKSDMETR-VVT----ADQGEALAKELG-----IPFIESSAKNDDNVNEI 172 (213)
T ss_dssp CSEEEEEEECTTCSSC-CSC----HHHHHHHHHHHT-----CCEEECBTTTTBSSHHH
T ss_pred CCCEEEEEECCCCccc-ccC----HHHHHHHHHHcC-----CEEEEEeCCCCCCHHHH
Confidence 3579999999998531 111 122233444444 47999999999998654
No 101
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.12 E-value=3.9e-05 Score=48.52 Aligned_cols=48 Identities=17% Similarity=0.075 Sum_probs=31.3
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
-.++++++||+|+.+..+.. .++.+.+.+..+ .+++++||.+|.|+.+
T Consensus 108 ~~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 155 (167)
T 1kao_A 108 KVPVILVGNKVDLESEREVS----SSEGRALAEEWG-----CPFMETSAKSKTMVDE 155 (167)
T ss_dssp CCCEEEEEECGGGGGGCCSC----HHHHHHHHHHHT-----SCEEEECTTCHHHHHH
T ss_pred CCCEEEEEECCcccccccCC----HHHHHHHHHHhC-----CCEEEecCCCCcCHHH
Confidence 35799999999986411111 122333444444 4899999999998854
No 102
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.12 E-value=0.00015 Score=47.73 Aligned_cols=49 Identities=18% Similarity=0.089 Sum_probs=32.1
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++|+++||+|+.+..+.. .++.+.+.+..+ .+++++||.+|.|+.+.
T Consensus 128 ~~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l 176 (191)
T 3dz8_A 128 NAQVILVGNKCDMEEERVVP----TEKGQLLAEQLG-----FDFFEASAKENISVRQA 176 (191)
T ss_dssp TCEEEEEEECTTCGGGCCSC----HHHHHHHHHHHT-----CEEEECBTTTTBSHHHH
T ss_pred CCCEEEEEECCCCccccccC----HHHHHHHHHHcC-----CeEEEEECCCCCCHHHH
Confidence 45799999999986411111 122333444444 48999999999998653
No 103
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=97.12 E-value=7.1e-05 Score=49.43 Aligned_cols=49 Identities=14% Similarity=0.083 Sum_probs=32.7
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++++++||+|+.+..+.. .++++.+.+..+ .+++++||.+|.|+.+.
T Consensus 128 ~~piiiv~NK~Dl~~~~~v~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l 176 (192)
T 2fg5_A 128 NIVMAIAGNKCDLSDIREVP----LKDAKEYAESIG-----AIVVETSAKNAINIEEL 176 (192)
T ss_dssp TCEEEEEEECGGGGGGCCSC----HHHHHHHHHTTT-----CEEEECBTTTTBSHHHH
T ss_pred CCcEEEEEECcccccccccC----HHHHHHHHHHcC-----CEEEEEeCCCCcCHHHH
Confidence 45799999999986411111 133444454433 58999999999998653
No 104
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.10 E-value=0.00014 Score=47.04 Aligned_cols=49 Identities=18% Similarity=0.207 Sum_probs=32.2
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++|+++||+|+.+..+.. .++++.+.+..+ .+++++||.+|.|+.+.
T Consensus 127 ~~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~l 175 (195)
T 3bc1_A 127 NPDIVLCGNKSDLEDQRAVK----EEEARELAEKYG-----IPYFETSAANGTNISHA 175 (195)
T ss_dssp SCCEEEEEECTTCGGGCCSC----HHHHHHHHHHHT-----CCEEECCTTTCTTHHHH
T ss_pred CCCEEEEEECcccccccccC----HHHHHHHHHHcC-----CCEEEEECCCCCCHHHH
Confidence 35799999999987411101 123344444444 48999999999998653
No 105
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.10 E-value=0.0001 Score=46.76 Aligned_cols=47 Identities=13% Similarity=0.124 Sum_probs=30.3
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
.++|++.||+|+.+..+.. .++...+.+..+ .+++++||.+|.|+.+
T Consensus 112 ~~iilv~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~ 158 (170)
T 1r2q_A 112 IVIALSGNKADLANKRAVD----FQEAQSYADDNS-----LLFMETSAKTSMNVNE 158 (170)
T ss_dssp CEEEEEEECGGGGGGCCSC----HHHHHHHHHHTT-----CEEEECCTTTCTTHHH
T ss_pred CcEEEEEECccCccccccC----HHHHHHHHHHcC-----CeEEEEeCCCCCCHHH
Confidence 4688889999986411111 122333444333 5899999999999865
No 106
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.09 E-value=0.00031 Score=46.33 Aligned_cols=48 Identities=21% Similarity=0.185 Sum_probs=31.2
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|+++||+|+.+. +.. .++...+.+.. ...+++++||++|.|+.+.
T Consensus 118 ~piilv~nK~Dl~~~-~~~----~~~~~~~~~~~----~~~~~~~~Sa~~g~gi~~l 165 (207)
T 1vg8_A 118 FPFVVLGNKIDLENR-QVA----TKRAQAWCYSK----NNIPYFETSAKEAINVEQA 165 (207)
T ss_dssp SCEEEEEECTTSSCC-CSC----HHHHHHHHHHT----TSCCEEECBTTTTBSHHHH
T ss_pred CcEEEEEECCCCccc-ccC----HHHHHHHHHhc----CCceEEEEeCCCCCCHHHH
Confidence 478999999998741 111 12233333322 2368999999999998654
No 107
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=97.09 E-value=0.00021 Score=47.71 Aligned_cols=50 Identities=10% Similarity=0.031 Sum_probs=33.0
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++|+++||+|+.+..+-. .++++.+.+..++ .+++++||.+|.|+.+.
T Consensus 134 ~~piilv~NK~Dl~~~~~v~----~~~~~~~~~~~~~----~~~~~~SA~~g~gi~~l 183 (201)
T 2hup_A 134 NIVQLLIGNKSDLSELREVS----LAEAQSLAEHYDI----LCAIETSAKDSSNVEEA 183 (201)
T ss_dssp TCEEEEEEECTTCGGGCCSC----HHHHHHHHHHTTC----SEEEECBTTTTBSHHHH
T ss_pred CCCEEEEEECCccccccccC----HHHHHHHHHHcCC----CEEEEEeCCCCCCHHHH
Confidence 35789999999986411101 1234445555443 38999999999998653
No 108
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.08 E-value=0.0002 Score=47.11 Aligned_cols=49 Identities=20% Similarity=0.177 Sum_probs=32.3
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++|+++||+|+.+..+-. .++.+.+.+..+ .+++++||.+|.|+.+.
T Consensus 126 ~~piilv~nK~Dl~~~~~v~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l 174 (191)
T 2a5j_A 126 NMVIMLIGNKSDLESRRDVK----REEGEAFAREHG-----LIFMETSAKTACNVEEA 174 (191)
T ss_dssp TCEEEEEEECTTCGGGCCSC----HHHHHHHHHHHT-----CEEEEECTTTCTTHHHH
T ss_pred CCCEEEEEECcccCCccccC----HHHHHHHHHHcC-----CEEEEEeCCCCCCHHHH
Confidence 35789999999986411101 123334444444 48999999999998653
No 109
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.08 E-value=0.00019 Score=47.61 Aligned_cols=49 Identities=16% Similarity=0.117 Sum_probs=32.2
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++|+++||+|+.+..+-.. ++...+.+..+ .+++++||.+|.|+.+.
T Consensus 113 ~~piilv~nK~Dl~~~~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l 161 (206)
T 2bcg_Y 113 TVLKLLVGNKCDLKDKRVVEY----DVAKEFADANK-----MPFLETSALDSTNVEDA 161 (206)
T ss_dssp TCEEEEEEECTTCTTTCCSCH----HHHHHHHHHTT-----CCEEECCTTTCTTHHHH
T ss_pred CCCEEEEEECCCCccccccCH----HHHHHHHHHcC-----CeEEEEeCCCCCCHHHH
Confidence 357899999999975211111 22333444433 58999999999998654
No 110
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.07 E-value=0.00014 Score=46.21 Aligned_cols=48 Identities=13% Similarity=0.054 Sum_probs=31.3
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
..+++++.||+|+.+..+.. .++.+.+.+..+ .+++++||.+|.|+.+
T Consensus 111 ~~~iilv~nK~Dl~~~~~v~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 158 (170)
T 1z0j_A 111 SIVVAIAGNKCDLTDVREVM----ERDAKDYADSIH-----AIFVETSAKNAININE 158 (170)
T ss_dssp TSEEEEEEECTTCGGGCCSC----HHHHHHHHHHTT-----CEEEECBTTTTBSHHH
T ss_pred CCcEEEEEECCccccccccC----HHHHHHHHHHcC-----CEEEEEeCCCCcCHHH
Confidence 35688999999987421100 122333444333 5899999999999864
No 111
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.07 E-value=0.00059 Score=49.85 Aligned_cols=52 Identities=17% Similarity=0.294 Sum_probs=34.3
Q ss_pred cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.|+ +.|+++||+|+++ ..+ ..+..+++..+++..++ +++++||.+|.|+.+.
T Consensus 116 ~~~-~~vivlnK~DL~~-~~~-~~~~~~~~~~~y~~~g~-----~v~~~sa~~~~g~~~L 167 (307)
T 1t9h_A 116 NDI-QPIICITKMDLIE-DQD-TEDTIQAYAEDYRNIGY-----DVYLTSSKDQDSLADI 167 (307)
T ss_dssp TTC-EEEEEEECGGGCC-CHH-HHHHHHHHHHHHHHHTC-----CEEECCHHHHTTCTTT
T ss_pred CCC-CEEEEEECCccCc-hhh-hHHHHHHHHHHHHhCCC-----eEEEEecCCCCCHHHH
Confidence 355 5689999999996 222 11112334455555564 7899999999988654
No 112
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.06 E-value=0.00066 Score=44.69 Aligned_cols=51 Identities=8% Similarity=-0.061 Sum_probs=32.3
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|++.||+|+.+.++... ..++.+.+.+..+. .+++++||.+|.|+.+.
T Consensus 120 ~piilv~nK~Dl~~~~~~~v--~~~~~~~~~~~~~~----~~~~e~Sa~~~~gv~~l 170 (184)
T 3ihw_A 120 VPMVLVGTQDAISAANPRVI--DDSRARKLSTDLKR----CTYYETCATYGLNVERV 170 (184)
T ss_dssp SCEEEEEECTTCBTTBCCCS--CHHHHHHHHHHTTT----CEEEEEBTTTTBTHHHH
T ss_pred CCEEEEEECccccccccccc--CHHHHHHHHHHcCC----CeEEEecCCCCCCHHHH
Confidence 46899999999852111100 01334445554442 68999999999998653
No 113
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=97.06 E-value=0.0003 Score=45.92 Aligned_cols=52 Identities=21% Similarity=0.291 Sum_probs=33.9
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHH---------HHHHHHHHHHhCCCCCCceEEEeeec-cCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEI---------VTKLGAFLKQAGFRDSDIEYVPCSGL-TGENLTT 70 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i---------~~~l~~~l~~~~~~~~~~~iipiSA~-~G~ni~~ 70 (97)
-.++|++.||+|+.+ +.....++ .++.+.+.+..+. .+++++||+ +|.|+.+
T Consensus 111 ~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~gi~~ 172 (184)
T 1m7b_A 111 NTKMLLVGCKSDLRT-DVSTLVELSNHRQTPVSYDQGANMAKQIGA----ATYIECSALQSENSVRD 172 (184)
T ss_dssp TCEEEEEEECGGGGG-CHHHHHHHHTTTCCCCCHHHHHHHHHHHTC----SEEEECBTTTBHHHHHH
T ss_pred CCCEEEEEEcchhhc-chhhHhhhhhcccCCCCHHHHHHHHHHcCC----cEEEEeeecCCCcCHHH
Confidence 468999999999874 22222221 1334555555553 689999998 6888754
No 114
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.06 E-value=0.00047 Score=49.59 Aligned_cols=48 Identities=23% Similarity=0.181 Sum_probs=32.2
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|+++||+|+.+ +... ++.+.+.+..+- . .+++++||++|.|+.+.
T Consensus 116 ~piilv~NK~DL~~--~~~v----~~~~~~~~~~~~--~-~~~~~~SAktg~gv~~l 163 (301)
T 1u0l_A 116 LETVMVINKMDLYD--EDDL----RKVRELEEIYSG--L-YPIVKTSAKTGMGIEEL 163 (301)
T ss_dssp CEEEEEECCGGGCC--HHHH----HHHHHHHHHHTT--T-SCEEECCTTTCTTHHHH
T ss_pred CCEEEEEeHHHcCC--chhH----HHHHHHHHHHhh--h-CcEEEEECCCCcCHHHH
Confidence 47899999999985 2222 233344443331 1 58999999999998654
No 115
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.06 E-value=7.6e-05 Score=50.22 Aligned_cols=49 Identities=14% Similarity=0.078 Sum_probs=30.8
Q ss_pred eEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 16 QLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 16 ~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
+.++++||+|+.+..+...+++.+. ++..+ ...+++++||.+|.|+.+.
T Consensus 156 ~~iiv~NK~Dl~~~~~~~~~~~~~~----~~~~~---~~~~i~~~Sa~~g~gi~~l 204 (221)
T 2wsm_A 156 ADLIVINKVALAEAVGADVEKMKAD----AKLIN---PRAKIIEMDLKTGKGFEEW 204 (221)
T ss_dssp CSEEEEECGGGHHHHTCCHHHHHHH----HHHHC---TTSEEEECBTTTTBTHHHH
T ss_pred CCEEEEecccCCcchhhHHHHHHHH----HHHhC---CCCeEEEeecCCCCCHHHH
Confidence 5789999999863100123333333 33333 2379999999999998653
No 116
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.05 E-value=8.3e-05 Score=48.18 Aligned_cols=48 Identities=13% Similarity=-0.042 Sum_probs=32.1
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|+++||+|+.+..+-. .++.+.+.+..+ .+++++||.+|.|+.+.
T Consensus 112 ~p~ilv~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~l 159 (181)
T 3t5g_A 112 IPIMLVGNKKDLHMERVIS----YEEGKALAESWN-----AAFLESSAKENQTAVDV 159 (181)
T ss_dssp CCEEEEEECTTCTTTCCSC----HHHHHHHHHHTT-----CEEEECCTTSHHHHHHH
T ss_pred CCEEEEEECccchhcceec----HHHHHHHHHHhC-----CcEEEEecCCCCCHHHH
Confidence 4789999999986421111 133444455444 58999999999988653
No 117
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=97.04 E-value=7.9e-06 Score=63.89 Aligned_cols=60 Identities=25% Similarity=0.258 Sum_probs=34.8
Q ss_pred ceeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 8 KSAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 8 ~~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
+++..|+ ++|+++||+|+.+.+.++. ..++..+-..........+++|+||++|.|+.+.
T Consensus 99 ~~~~~~v-PiIVViNKiDl~~~~~~~v---~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eL 158 (537)
T 3izy_P 99 HAKDAHV-PIVLAINKCDKAEADPEKV---KKELLAYDVVCEDYGGDVQAVHVSALTGENMMAL 158 (537)
T ss_dssp HHHTTTC-CEEECCBSGGGTTTSCCSS---SSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHH
T ss_pred HHHHcCC-cEEEEEecccccccchHHH---HHHHHhhhhhHHhcCCCceEEEEECCCCCCchhH
Confidence 3455677 5899999999875322211 1122111000000012479999999999998653
No 118
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=97.04 E-value=0.00033 Score=46.03 Aligned_cols=50 Identities=14% Similarity=0.192 Sum_probs=24.4
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeecc-CCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLT-GENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~-G~ni~~~ 71 (97)
-.++|+++||+|+.+. +... ..+++..+.+..+ .+++++||.+ |.|+.+.
T Consensus 132 ~~piilv~nK~Dl~~~-~~~v--~~~~~~~~~~~~~-----~~~~~~Sa~~~~~gi~~l 182 (208)
T 2yc2_C 132 PLRAVLVANKTDLPPQ-RHQV--RLDMAQDWATTNT-----LDFFDVSANPPGKDADAP 182 (208)
T ss_dssp CCEEEEEEECC--------CC--CHHHHHHHHHHTT-----CEEEECCC-------CHH
T ss_pred CCcEEEEEECcccchh-hccC--CHHHHHHHHHHcC-----CEEEEeccCCCCcCHHHH
Confidence 4579999999998740 1110 1233445555544 5999999999 9998654
No 119
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.03 E-value=0.00014 Score=47.72 Aligned_cols=49 Identities=18% Similarity=0.178 Sum_probs=32.1
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++|+++||+|+.+..+.. .++.+.+.+..+ .+++++||++|.|+.+.
T Consensus 130 ~~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l 178 (193)
T 2oil_A 130 TIVVMLVGNKSDLSQAREVP----TEEARMFAENNG-----LLFLETSALDSTNVELA 178 (193)
T ss_dssp TCEEEEEEECGGGGGGCCSC----HHHHHHHHHHTT-----CEEEEECTTTCTTHHHH
T ss_pred CCeEEEEEECCCcccccccC----HHHHHHHHHHcC-----CEEEEEeCCCCCCHHHH
Confidence 35799999999987411111 123334444433 58999999999998653
No 120
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.02 E-value=0.00012 Score=47.01 Aligned_cols=48 Identities=23% Similarity=0.115 Sum_probs=30.9
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++++++||+|+.+..+-. .++...+.+..+ .+++++||.+|.|+.+.
T Consensus 115 ~piilv~nK~Dl~~~~~v~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~l 162 (181)
T 2fn4_A 115 FPVVLVGNKADLESQRQVP----RSEASAFGASHH-----VAYFEASAKLRLNVDEA 162 (181)
T ss_dssp CCEEEEEECGGGGGGCCSC----HHHHHHHHHHTT-----CEEEECBTTTTBSHHHH
T ss_pred CCEEEEEECcccccccccC----HHHHHHHHHHcC-----CeEEEecCCCCCCHHHH
Confidence 4789999999987411100 122233333333 58999999999998653
No 121
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.02 E-value=4.8e-05 Score=50.52 Aligned_cols=51 Identities=16% Similarity=0.049 Sum_probs=31.4
Q ss_pred CeEEEEEEcCCCCCCCHH-HHHHH-HHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQD-RFQEI-VTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~-~~~~i-~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
.++|+++||+|+.+.... ....+ .++.+.+.+..+ .+++++||.+|.|+.+
T Consensus 134 ~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~~SA~~g~gv~e 186 (199)
T 2p5s_A 134 VPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYG-----ALFCETSAKDGSNIVE 186 (199)
T ss_dssp CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHT-----CEEEECCTTTCTTHHH
T ss_pred CCEEEEEECcccccccccccccccCHHHHHHHHHHcC-----CeEEEeeCCCCCCHHH
Confidence 479999999998621000 00001 123344444444 5899999999999865
No 122
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.01 E-value=0.00015 Score=47.07 Aligned_cols=48 Identities=21% Similarity=0.205 Sum_probs=31.5
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++++++||+|+.+..+.. .++...+.+..+ .+++++||.+|.|+.+.
T Consensus 116 ~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l 163 (186)
T 2bme_A 116 IVIILCGNKKDLDADREVT----FLEASRFAQENE-----LMFLETSALTGENVEEA 163 (186)
T ss_dssp CEEEEEEECGGGGGGCCSC----HHHHHHHHHHTT-----CEEEECCTTTCTTHHHH
T ss_pred CcEEEEEECcccccccccC----HHHHHHHHHHcC-----CEEEEecCCCCCCHHHH
Confidence 4799999999986311111 122333444433 58999999999998653
No 123
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.97 E-value=0.00012 Score=48.47 Aligned_cols=50 Identities=20% Similarity=0.109 Sum_probs=32.0
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++|+++||+|+.+..+-. .++.+.+.+... ..+++++||++|.|+.+.
T Consensus 131 ~~piilV~NK~Dl~~~~~v~----~~~~~~~~~~~~----~~~~~~~SA~~g~gi~~l 180 (192)
T 2il1_A 131 DAELLLVGNKLDCETDREIT----RQQGEKFAQQIT----GMRFCEASAKDNFNVDEI 180 (192)
T ss_dssp TCEEEEEEECGGGGGGCCSC----HHHHHHHHHTST----TCEEEECBTTTTBSHHHH
T ss_pred CCcEEEEEECcccccccccC----HHHHHHHHHhcC----CCeEEEEeCCCCCCHHHH
Confidence 35799999999986421101 122334443321 368999999999998653
No 124
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.96 E-value=0.00019 Score=48.06 Aligned_cols=50 Identities=20% Similarity=0.228 Sum_probs=33.0
Q ss_pred CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 13 GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 13 Gvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.-.++|+++||+|+.+..+-. .++++.+.+..+ .+++++||.+|.|+.+.
T Consensus 140 ~~~piilV~NK~Dl~~~~~v~----~~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l 189 (217)
T 2f7s_A 140 ENPDIVLIGNKADLPDQREVN----ERQARELADKYG-----IPYFETSAATGQNVEKA 189 (217)
T ss_dssp TCCEEEEEEECTTCGGGCCSC----HHHHHHHHHHTT-----CCEEEEBTTTTBTHHHH
T ss_pred CCCCEEEEEECCccccccccC----HHHHHHHHHHCC-----CcEEEEECCCCCCHHHH
Confidence 345799999999987411100 123344444444 58999999999998654
No 125
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.95 E-value=0.00019 Score=47.83 Aligned_cols=48 Identities=23% Similarity=0.248 Sum_probs=31.4
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|+++||+|+.+..+-.. .+...+.+..+ .+++++||.+|.|+.+.
T Consensus 131 ~piilv~nK~Dl~~~~~v~~----~~~~~~~~~~~-----~~~~~~SA~~g~gi~~l 178 (200)
T 2o52_A 131 IVVILCGNKKDLDPEREVTF----LEASRFAQENE-----LMFLETSALTGENVEEA 178 (200)
T ss_dssp CEEEEEEECGGGGGGCCSCH----HHHHHHHHHTT-----CEEEEECTTTCTTHHHH
T ss_pred CcEEEEEECCCcccccccCH----HHHHHHHHHcC-----CEEEEEeCCCCCCHHHH
Confidence 57999999999863111111 22333444433 58999999999998653
No 126
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.93 E-value=0.00022 Score=48.00 Aligned_cols=49 Identities=16% Similarity=0.144 Sum_probs=31.6
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++|++.||+|+.+..+-. .++.+.+.+..+ .+++++||++|.|+.+.
T Consensus 131 ~~piilv~NK~Dl~~~~~v~----~~~~~~~~~~~~-----~~~~~~Sa~~g~gv~~l 179 (201)
T 2ew1_A 131 KVITVLVGNKIDLAERREVS----QQRAEEFSEAQD-----MYYLETSAKESDNVEKL 179 (201)
T ss_dssp TCEEEEEEECGGGGGGCSSC----HHHHHHHHHHHT-----CCEEECCTTTCTTHHHH
T ss_pred CCCEEEEEECCCCccccccC----HHHHHHHHHHcC-----CEEEEEeCCCCCCHHHH
Confidence 35789999999986411100 122333344334 58999999999998654
No 127
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.92 E-value=0.00037 Score=50.28 Aligned_cols=46 Identities=17% Similarity=0.166 Sum_probs=30.2
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
-.++|+++||+|+.+. ... +.+.++.+ .+ ..+++|+||.+|.|+.+
T Consensus 117 ~~p~ilV~NK~Dl~~~-~~~---~~~~~~~~---~~----~~~~~~iSA~~g~gv~~ 162 (301)
T 1wf3_A 117 KVPILLVGNKLDAAKY-PEE---AMKAYHEL---LP----EAEPRMLSALDERQVAE 162 (301)
T ss_dssp TSCEEEEEECGGGCSS-HHH---HHHHHHHT---ST----TSEEEECCTTCHHHHHH
T ss_pred CCCEEEEEECcccCCc-hHH---HHHHHHHh---cC----cCcEEEEeCCCCCCHHH
Confidence 3579999999999852 221 22222222 22 36899999999998744
No 128
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.92 E-value=0.00023 Score=46.93 Aligned_cols=47 Identities=28% Similarity=0.246 Sum_probs=30.7
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCC-CCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGE-NLTT 70 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~-ni~~ 70 (97)
.++|++.||+|+.+..+-. .++...+.+..+ .+++++||.+|. |+.+
T Consensus 133 ~piilv~NK~Dl~~~~~v~----~~~~~~~~~~~~-----~~~~~~Sa~~g~~gi~~ 180 (196)
T 2atv_A 133 VTLILVGNKADLDHSRQVS----TEEGEKLATELA-----CAFYECSACTGEGNITE 180 (196)
T ss_dssp CCEEEEEECGGGGGGCCSC----HHHHHHHHHHHT-----SEEEECCTTTCTTCHHH
T ss_pred CcEEEEEECcccccccccC----HHHHHHHHHHhC-----CeEEEECCCcCCcCHHH
Confidence 4799999999986411111 122333344334 589999999999 8865
No 129
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.89 E-value=0.0008 Score=50.18 Aligned_cols=51 Identities=18% Similarity=0.270 Sum_probs=33.5
Q ss_pred cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.|++ .|+++||+|+++ .+..+.+ +++...++..|+ +++++||.+|.++...
T Consensus 159 ~~~~-~iivlNK~DL~~--~~~~~~~-~~~~~~y~~~G~-----~v~~~Sa~~~~gl~~L 209 (358)
T 2rcn_A 159 LQVE-PLIVLNKIDLLD--DEGMDFV-NEQMDIYRNIGY-----RVLMVSSHTQDGLKPL 209 (358)
T ss_dssp HTCE-EEEEEECGGGCC--HHHHHHH-HHHHHHHHTTTC-----CEEECBTTTTBTHHHH
T ss_pred cCCC-EEEEEECccCCC--chhHHHH-HHHHHHHHhCCC-----cEEEEecCCCcCHHHH
Confidence 4665 489999999996 3222222 233344455565 6899999999987553
No 130
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.89 E-value=0.00012 Score=48.59 Aligned_cols=48 Identities=13% Similarity=0.014 Sum_probs=31.3
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|+++||+|+.+..+-. .++.+.+.+..+ .+++++||.+|.|+.+.
T Consensus 130 ~piilv~nK~Dl~~~~~v~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~l 177 (201)
T 3oes_A 130 VPVVLVGNKADLSPEREVQ----AVEGKKLAESWG-----ATFMESSARENQLTQGI 177 (201)
T ss_dssp CCEEEEEECTTCGGGCCSC----HHHHHHHHHHHT-----CEEEECCTTCHHHHHHH
T ss_pred CCEEEEEECccCccccccC----HHHHHHHHHHhC-----CeEEEEeCCCCCCHHHH
Confidence 4789999999987421111 122233444444 58999999999988653
No 131
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.88 E-value=7.9e-05 Score=47.11 Aligned_cols=43 Identities=23% Similarity=0.331 Sum_probs=29.2
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
.++++++||+|+.+. + +++..+. ..++ .+++++||.+|.|+.+
T Consensus 109 ~p~ilv~nK~Dl~~~-~-------~~~~~~~-~~~~----~~~~~~Sa~~~~gv~~ 151 (161)
T 2dyk_A 109 KPVILVATKVDDPKH-E-------LYLGPLY-GLGF----GDPIPTSSEHARGLEE 151 (161)
T ss_dssp CCEEEEEECCCSGGG-G-------GGCGGGG-GGSS----CSCEECBTTTTBSHHH
T ss_pred CCEEEEEECcccccc-h-------HhHHHHH-hCCC----CCeEEEecccCCChHH
Confidence 468999999999752 1 1222222 2333 3789999999999854
No 132
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=96.87 E-value=0.00031 Score=48.12 Aligned_cols=48 Identities=19% Similarity=0.086 Sum_probs=30.4
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|+|.||+|+.+..+-. .++.+.+.+..+ .+++++||++|.|+.+.
T Consensus 146 ~piilVgNK~DL~~~r~v~----~~e~~~~a~~~~-----~~~~e~SAk~g~~v~el 193 (211)
T 2g3y_A 146 IPIILVGNKSDLVRCREVS----VSEGRACAVVFD-----CKFIETSAAVQHNVKEL 193 (211)
T ss_dssp SCEEEEEECTTCGGGCCSC----HHHHHHHHHHHT-----CEEEECBTTTTBSHHHH
T ss_pred CcEEEEEEChHHhcCceEe----HHHHHHHHHHcC-----CEEEEEeCCCCCCHHHH
Confidence 5799999999986411100 111222333333 58999999999998654
No 133
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.87 E-value=5.4e-05 Score=53.42 Aligned_cols=47 Identities=11% Similarity=0.161 Sum_probs=29.8
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|+++||+|+.+ ..... .....+.+..+ .+++|+||.+|.|+.+.
T Consensus 111 ~pvilv~NK~Dl~~--~~~~~---~~~~~l~~~lg-----~~vi~~SA~~g~gi~el 157 (256)
T 3iby_A 111 KPVVVALNMMDIAE--HRGIS---IDTEKLESLLG-----CSVIPIQAHKNIGIPAL 157 (256)
T ss_dssp SCEEEEEECHHHHH--HTTCE---ECHHHHHHHHC-----SCEEECBGGGTBSHHHH
T ss_pred CCEEEEEEChhcCC--cCCcH---HHHHHHHHHcC-----CCEEEEECCCCCCHHHH
Confidence 37999999999763 11011 11122223334 58999999999998653
No 134
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=96.87 E-value=0.00053 Score=51.95 Aligned_cols=52 Identities=17% Similarity=0.141 Sum_probs=32.2
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++|+++||+|+.+... .+ ++...+..........+++++||.+|.|+.+.
T Consensus 423 ~~p~ilv~NK~Dl~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 474 (497)
T 3lvq_E 423 DAIILIFANKQDLPDAMK--PH----EIQEKLGLTRIRDRNWYVQPSCATSGDGLYEG 474 (497)
T ss_dssp TCEEEEEEECCSSSSCCC--HH----HHHHHTTCTTCCSSCEEEEECBTTTTBTHHHH
T ss_pred CCcEEEEEECCCCCcCCC--HH----HHHHHhchhhhhcCCeEEEEEECCCCCCHHHH
Confidence 457999999999975211 11 22222211111223578999999999999654
No 135
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.86 E-value=0.00054 Score=46.09 Aligned_cols=52 Identities=21% Similarity=0.291 Sum_probs=33.6
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHH---------HHHHHHHHHHhCCCCCCceEEEeeec-cCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEI---------VTKLGAFLKQAGFRDSDIEYVPCSGL-TGENLTT 70 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i---------~~~l~~~l~~~~~~~~~~~iipiSA~-~G~ni~~ 70 (97)
-.++|++.||+|+.+ +.....++ .++.+.+.+..+. .+++++||+ +|.|+.+
T Consensus 132 ~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~SAk~~~~gv~~ 193 (205)
T 1gwn_A 132 NTKMLLVGCKSDLRT-DVSTLVELSNHRQTPVSYDQGANMAKQIGA----ATYIECSALQSENSVRD 193 (205)
T ss_dssp TCEEEEEEECGGGGG-CHHHHHHHHTTTCCCCCHHHHHHHHHHHTC----SEEEECCTTTCHHHHHH
T ss_pred CCCEEEEEechhhcc-chhhhhhhcccccCCCCHHHHHHHHHHcCC----CEEEEeeeccCCcCHHH
Confidence 457999999999874 22222221 1334455555543 589999999 6788754
No 136
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.82 E-value=0.00012 Score=49.37 Aligned_cols=48 Identities=27% Similarity=0.131 Sum_probs=29.9
Q ss_pred eEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 16 QLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 16 ~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
+.++++||+|+.+..+...+ ++...++..+. ..+++++||.+|.|+.+
T Consensus 166 ~~iiv~NK~Dl~~~~~~~~~----~~~~~~~~~~~---~~~~~~~Sa~~g~gv~~ 213 (226)
T 2hf9_A 166 ADLIVINKIDLADAVGADIK----KMENDAKRINP---DAEVVLLSLKTMEGFDK 213 (226)
T ss_dssp CSEEEEECGGGHHHHTCCHH----HHHHHHHHHCT---TSEEEECCTTTCTTHHH
T ss_pred CCEEEEeccccCchhHHHHH----HHHHHHHHhCC---CCeEEEEEecCCCCHHH
Confidence 34999999998631001122 23333333332 36999999999999865
No 137
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.81 E-value=0.00044 Score=46.03 Aligned_cols=49 Identities=12% Similarity=-0.065 Sum_probs=32.0
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++|++.||+|+.+..+-.. ++.+.+.+..+ .+++++||.+|.|+.+.
T Consensus 130 ~~piilv~nK~Dl~~~~~v~~----~~~~~~a~~~~-----~~~~e~Sa~~~~~v~~l 178 (195)
T 3cbq_A 130 DLPVILVGNKSDLARSREVSL----EEGRHLAGTLS-----CKHIETSAALHHNTREL 178 (195)
T ss_dssp CCCEEEEEECTTCTTTCCSCH----HHHHHHHHHTT-----CEEEEEBTTTTBSHHHH
T ss_pred CCCEEEEeechhccccCCcCH----HHHHHHHHHhC-----CEEEEEcCCCCCCHHHH
Confidence 357999999999974211111 22333444433 58999999999998653
No 138
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.81 E-value=0.00084 Score=46.19 Aligned_cols=16 Identities=19% Similarity=0.160 Sum_probs=13.9
Q ss_pred ceEEEeeeccCCCCCC
Q psy15201 55 IEYVPCSGLTGENLTT 70 (97)
Q Consensus 55 ~~iipiSA~~G~ni~~ 70 (97)
.+++|+||.+|.|+.+
T Consensus 231 ~~~~~~SA~~~~gi~~ 246 (262)
T 1yrb_A 231 VRVLYLSAKTREGFED 246 (262)
T ss_dssp CCCEECCTTTCTTHHH
T ss_pred ccceEEEecCcccHHH
Confidence 5889999999999864
No 139
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=96.79 E-value=0.00019 Score=48.34 Aligned_cols=47 Identities=19% Similarity=0.199 Sum_probs=31.4
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++|+++||+|+.+... ..+...+.+..+ .+++++||.+|.|+.+.
T Consensus 119 ~~p~ilv~nK~Dl~~~~~------~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l 165 (221)
T 3gj0_A 119 NIPIVLCGNKVDIKDRKV------KAKSIVFHRKKN-----LQYYDISAKSNYNFEKP 165 (221)
T ss_dssp TCCEEEEEECTTSSSCSS------CGGGCCHHHHHT-----CEEEECBGGGTBTTTHH
T ss_pred CCCEEEEEECCccccccc------cHHHHHHHHHcC-----CEEEEEeCCCCCCHHHH
Confidence 357999999999875211 112222333333 58999999999999654
No 140
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=96.77 E-value=0.0014 Score=51.82 Aligned_cols=50 Identities=20% Similarity=0.351 Sum_probs=34.1
Q ss_pred cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
.++ ++|+++||+|+.+.+ .+++.+++...+ ++. ..+++++||++|.|+.+
T Consensus 122 ~~i-piIvViNKiDl~~a~---~~~v~~ei~~~l---g~~--~~~vi~vSAktg~GI~~ 171 (599)
T 3cb4_D 122 MDL-EVVPVLNKIDLPAAD---PERVAEEIEDIV---GID--ATDAVRCSAKTGVGVQD 171 (599)
T ss_dssp TTC-EEEEEEECTTSTTCC---HHHHHHHHHHHT---CCC--CTTCEEECTTTCTTHHH
T ss_pred CCC-CEEEeeeccCccccc---HHHHHHHHHHHh---CCC--cceEEEeecccCCCchh
Confidence 466 689999999998643 333344444433 442 24689999999999854
No 141
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=96.75 E-value=0.0015 Score=46.96 Aligned_cols=50 Identities=28% Similarity=0.412 Sum_probs=34.7
Q ss_pred CeEEEEEEcCCCCCCCHHH---HHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDR---FQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENL 68 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~---~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni 68 (97)
.++++++||+|+.+ .+.+ +....++++.+.+..++ ...+++++||++ .++
T Consensus 116 ~piilv~NK~Dl~~-~~~r~~~~~v~~~~~~~~~~~~g~--~~~~~~~tSa~~-~~i 168 (307)
T 3r7w_A 116 AKIFVLLHKMDLVQ-LDKREELFQIMMKNLSETSSEFGF--PNLIGFPTSIWD-ESL 168 (307)
T ss_dssp CEEEEEEECGGGSC-HHHHHHHHHHHHHHHHHHHHTTTC--CSCEEEECCTTS-SHH
T ss_pred CeEEEEEecccccc-hhhhhHHHHHHHHHHHHHHHHcCC--CCeEEEEeeecC-ChH
Confidence 58999999999985 1122 22444666777766664 247999999999 554
No 142
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=96.75 E-value=0.00094 Score=46.59 Aligned_cols=46 Identities=17% Similarity=0.201 Sum_probs=31.7
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
.++|++.||+|+.+ +... ++.+.+.+.. ...+++++||++|.|+.+
T Consensus 199 ~piilV~NK~Dl~~--~~~v----~~~~~~~~~~----~~~~~~e~SAk~g~gv~e 244 (255)
T 3c5h_A 199 KPIVVVLTKCDEGV--ERYI----RDAHTFALSK----KNLQVVETSARSNVNVDL 244 (255)
T ss_dssp CCEEEEEECGGGBC--HHHH----HHHHHHHHTS----SSCCEEECBTTTTBSHHH
T ss_pred CCEEEEEEcccccc--cHHH----HHHHHHHHhc----CCCeEEEEECCCCCCHHH
Confidence 57999999999864 3222 3344444332 136899999999999865
No 143
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=96.74 E-value=0.0003 Score=47.58 Aligned_cols=48 Identities=19% Similarity=0.260 Sum_probs=30.5
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|+++||+|+.+..+-. .++...+.+..+ .+++++||.+|.|+.+.
T Consensus 119 ~piilv~nK~Dl~~~~~v~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l 166 (223)
T 3cpj_B 119 VAVGLIGNKSDLAHLRAVP----TEESKTFAQENQ-----LLFTETSALNSENVDKA 166 (223)
T ss_dssp CEEEEEECCGGGGGGCCSC----HHHHHHHHHHTT-----CEEEECCCC-CCCHHHH
T ss_pred CeEEEEEECcccccccccC----HHHHHHHHHHcC-----CEEEEEeCCCCCCHHHH
Confidence 4789999999986411100 122334444433 58999999999998654
No 144
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=96.72 E-value=0.00096 Score=52.77 Aligned_cols=51 Identities=20% Similarity=0.220 Sum_probs=34.0
Q ss_pred ccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 11 VSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 11 ~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
..++ ++|+++||+|+.+.+ .+++.+++... .++. ..+++++||++|.|+.+
T Consensus 123 ~~~i-piIvviNKiDl~~a~---~~~v~~el~~~---lg~~--~~~vi~vSAktg~GI~~ 173 (600)
T 2ywe_A 123 EQDL-VIIPVINKIDLPSAD---VDRVKKQIEEV---LGLD--PEEAILASAKEGIGIEE 173 (600)
T ss_dssp HTTC-EEEEEEECTTSTTCC---HHHHHHHHHHT---SCCC--GGGCEECBTTTTBSHHH
T ss_pred HCCC-CEEEEEeccCccccC---HHHHHHHHHHh---hCCC--cccEEEEEeecCCCchH
Confidence 3566 489999999998643 23333444333 2442 24689999999999843
No 145
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=96.72 E-value=0.0011 Score=50.98 Aligned_cols=46 Identities=22% Similarity=0.256 Sum_probs=30.8
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++|+++||+|+.+...... +++. ..++ .+++++||++|.|+.+.
T Consensus 343 ~~piIvV~NK~Dl~~~~~~~~----~~l~----~~~~----~~~i~vSAktg~GI~eL 388 (476)
T 3gee_A 343 AAKFLTVANKLDRAANADALI----RAIA----DGTG----TEVIGISALNGDGIDTL 388 (476)
T ss_dssp TSEEEEEEECTTSCTTTHHHH----HHHH----HHHT----SCEEECBTTTTBSHHHH
T ss_pred CCCEEEEEECcCCCCccchhH----HHHH----hcCC----CceEEEEECCCCCHHHH
Confidence 468999999999986322211 1121 1122 58999999999998553
No 146
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.69 E-value=0.00037 Score=45.63 Aligned_cols=47 Identities=17% Similarity=0.014 Sum_probs=29.9
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccC---CCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTG---ENLTT 70 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G---~ni~~ 70 (97)
.++|+++||+|+.+..+-. .++.+.+.+..+ .+++++||++| .|+.+
T Consensus 128 ~piilv~nK~Dl~~~~~v~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~~~~i~~ 177 (189)
T 1z06_A 128 IPRILVGNKCDLRSAIQVP----TDLAQKFADTHS-----MPLFETSAKNPNDNDHVEA 177 (189)
T ss_dssp CCEEEEEECTTCGGGCCSC----HHHHHHHHHHTT-----CCEEECCSSSGGGGSCHHH
T ss_pred CCEEEEEECccccccceeC----HHHHHHHHHHcC-----CEEEEEeCCcCCcccCHHH
Confidence 5789999999986411101 122334444433 58999999999 66643
No 147
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.68 E-value=0.00075 Score=49.83 Aligned_cols=46 Identities=13% Similarity=0.170 Sum_probs=27.4
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGEN 67 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~n 67 (97)
.++|+|+||+|+.+ .......++++..+++.. .++++++||.+|.|
T Consensus 175 ~piIlV~NK~Dl~~--~~ev~~~k~~i~~~~~~~-----~i~~~~~Sa~~~~~ 220 (361)
T 2qag_A 175 VNIVPVIAKADTLT--LKERERLKKRILDEIEEH-----NIKIYHLPDAESDE 220 (361)
T ss_dssp SCEEEEEECCSSSC--HHHHHHHHHHHHHHTTCC------CCSCCCC------
T ss_pred CCEEEEEECCCCCC--HHHHHHHHHHHHHHHHHC-----CCCEEeCCCcCCCc
Confidence 46999999999984 444444445666555433 36889999999987
No 148
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.67 E-value=0.00086 Score=44.77 Aligned_cols=49 Identities=6% Similarity=0.005 Sum_probs=24.1
Q ss_pred CeEEEEEEcCCCCCCC--HHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCC
Q psy15201 15 NQLGVVINKLDTVSWS--QDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENL 68 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~--~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni 68 (97)
.++|+++||+|+.+.. ....+.+.++++.+....+ .+++++||++|.+-
T Consensus 121 ~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~Sa~~~~~~ 171 (218)
T 1nrj_B 121 IDILIACNKSELFTARPPSKIKDALESEIQKVIERRK-----KSLNEVERKINEED 171 (218)
T ss_dssp CCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHH-----HHHHC---------
T ss_pred CCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHh-----cccccccccccccc
Confidence 5699999999998622 2233333444554443332 57788999999864
No 149
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.65 E-value=0.00016 Score=50.87 Aligned_cols=50 Identities=20% Similarity=0.371 Sum_probs=31.3
Q ss_pred cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
++..++|+++||+|+.+ ..... .....+.+..+ .+++|+||.+|.|+.+.
T Consensus 107 ~~~~p~ilv~NK~Dl~~--~~~~~---~~~~~l~~~lg-----~~~~~~Sa~~g~gi~~l 156 (271)
T 3k53_A 107 MEVKNIILVLNKFDLLK--KKGAK---IDIKKMRKELG-----VPVIPTNAKKGEGVEEL 156 (271)
T ss_dssp TTCCSEEEEEECHHHHH--HHTCC---CCHHHHHHHHS-----SCEEECBGGGTBTHHHH
T ss_pred cCCCCEEEEEEChhcCc--ccccH---HHHHHHHHHcC-----CcEEEEEeCCCCCHHHH
Confidence 45468999999999753 11111 11222333334 58999999999997543
No 150
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=96.64 E-value=0.00016 Score=53.36 Aligned_cols=47 Identities=28% Similarity=0.294 Sum_probs=31.4
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-+++|+++||+|+.+ .++ .++.+.+.+.. ..+++++||.+|.|+.+.
T Consensus 274 ~~p~ilV~NK~Dl~~-~~e-------~~~~l~~~l~~---~~~v~~iSA~tg~gi~eL 320 (342)
T 1lnz_A 274 ERPQIIVANKMDMPE-AAE-------NLEAFKEKLTD---DYPVFPISAVTREGLREL 320 (342)
T ss_dssp TSCBCBEEECTTSTT-HHH-------HHHHHHHHCCS---CCCBCCCSSCCSSTTHHH
T ss_pred CCCEEEEEECccCCC-CHH-------HHHHHHHHhhc---CCCEEEEECCCCcCHHHH
Confidence 467899999999975 221 22233333321 158899999999998654
No 151
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=96.60 E-value=0.001 Score=48.72 Aligned_cols=47 Identities=28% Similarity=0.449 Sum_probs=32.4
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++|+++||+|+.+ ...+++ ...+++..+ .+++++||.+|+|+.+.
T Consensus 280 ~~piilV~NK~Dl~~--~~~~~~----~~~~~~~~~-----~~~~~iSA~~g~gi~~l 326 (357)
T 2e87_A 280 DLPFLVVINKIDVAD--EENIKR----LEKFVKEKG-----LNPIKISALKGTGIDLV 326 (357)
T ss_dssp TSCEEEEECCTTTCC--HHHHHH----HHHHHHHTT-----CCCEECBTTTTBTHHHH
T ss_pred CCCEEEEEECcccCC--hHHHHH----HHHHHHhcC-----CCeEEEeCCCCcCHHHH
Confidence 467999999999985 333322 333333322 58899999999998654
No 152
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=96.56 E-value=6.1e-05 Score=53.46 Aligned_cols=47 Identities=17% Similarity=0.274 Sum_probs=29.8
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|+|+||+|+.+ ..... ...+.+.+..+ .+++++||.+|.|+.+.
T Consensus 113 ~p~ivv~NK~Dl~~--~~~~~---~~~~~l~~~lg-----~~~i~~SA~~g~gi~el 159 (274)
T 3i8s_A 113 IPCIVALNMLDIAE--KQNIR---IEIDALSARLG-----CPVIPLVSTRGRGIEAL 159 (274)
T ss_dssp CCEEEEEECHHHHH--HTTEE---ECHHHHHHHHT-----SCEEECCCGGGHHHHHH
T ss_pred CCEEEEEECccchh--hhhHH---HHHHHHHHhcC-----CCEEEEEcCCCCCHHHH
Confidence 36899999999763 11100 11222333334 58999999999998654
No 153
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.56 E-value=0.0025 Score=45.11 Aligned_cols=45 Identities=16% Similarity=0.154 Sum_probs=30.9
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
-++.|+++||+|+++ .+.. ++...+++..++ ++ ++||.+|.|+.+
T Consensus 46 ~k~~iivlNK~DL~~--~~~~----~~~~~~~~~~g~-----~v-~iSa~~~~gi~~ 90 (262)
T 3cnl_A 46 RKETIILLNKVDIAD--EKTT----KKWVEFFKKQGK-----RV-ITTHKGEPRKVL 90 (262)
T ss_dssp TSEEEEEEECGGGSC--HHHH----HHHHHHHHHTTC-----CE-EECCTTSCHHHH
T ss_pred CCCcEEEEECccCCC--HHHH----HHHHHHHHHcCC-----eE-EEECCCCcCHHH
Confidence 578899999999996 3222 233445554454 56 899999998754
No 154
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=96.54 E-value=0.00077 Score=46.36 Aligned_cols=48 Identities=19% Similarity=0.125 Sum_probs=32.7
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|+|.||+|+.+..+ . -.++.+.+.+..+ .+++.+||++|.|+.+.
T Consensus 119 ~piilVgNK~Dl~~~r~--V--~~~e~~~~a~~~~-----~~~~e~SAktg~nV~e~ 166 (216)
T 4dkx_A 119 VIIMLVGNKTDLADKRQ--V--SIEEGERKAKELN-----VMFIETSAKAGYNVKQL 166 (216)
T ss_dssp SEEEEEEECTTCGGGCC--S--CHHHHHHHHHHHT-----CEEEEEBTTTTBSHHHH
T ss_pred CeEEEEeeccchHhcCc--c--cHHHHhhHHHHhC-----CeeEEEeCCCCcCHHHH
Confidence 47899999999864111 0 1233445555555 58999999999998664
No 155
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.52 E-value=0.00035 Score=45.01 Aligned_cols=46 Identities=20% Similarity=0.273 Sum_probs=29.3
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
.++|++.||+|+.+ +.... .+.+.+.+..+ .+++++||++|.|+.+
T Consensus 109 ~p~ilv~nK~Dl~~--~~~~~---~~~~~~~~~~~-----~~~~~~SA~~~~~v~~ 154 (165)
T 2wji_A 109 ANLLLALNKMDLAK--SLGIE---IDVDKLEKILG-----VKVVPLSAAKKMGIEE 154 (165)
T ss_dssp CCEEEEEECHHHHH--HTTCC---CCHHHHHHHHT-----SCEEECBGGGTBSHHH
T ss_pred CCEEEEEEchHhcc--ccChh---hHHHHHHHHhC-----CCEEEEEcCCCCCHHH
Confidence 46899999999752 10000 11223333334 4899999999999865
No 156
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.52 E-value=0.0014 Score=44.18 Aligned_cols=52 Identities=19% Similarity=0.096 Sum_probs=33.4
Q ss_pred CCeEEEEEEcCCCCCCCHHHHH---------HHHHHHHHHHHHhCCCCCCceEEEeeeccCCC-CCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQ---------EIVTKLGAFLKQAGFRDSDIEYVPCSGLTGEN-LTT 70 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~---------~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~n-i~~ 70 (97)
-.++|++.||+|+.+. ..... ...++...+.+..++ .+++++||++|.| +.+
T Consensus 131 ~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~SA~~g~g~v~~ 192 (214)
T 3q3j_B 131 STRVLLIGCKTDLRTD-LSTLMELSHQKQAPISYEQGCAIAKQLGA----EIYLEGSAFTSEKSIHS 192 (214)
T ss_dssp TSEEEEEEECGGGGGC-HHHHHHHHHTTCCCCCHHHHHHHHHHHTC----SEEEECCTTTCHHHHHH
T ss_pred CCCEEEEEEChhhccc-hhhhhhhcccccCccCHHHHHHHHHHcCC----CEEEEeccCCCcccHHH
Confidence 3579999999998741 11111 112334455555553 4899999999998 754
No 157
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.42 E-value=0.0018 Score=42.35 Aligned_cols=53 Identities=15% Similarity=0.190 Sum_probs=29.5
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHH-HHHHHHHHHhCCCCCCceEEEeeeccCC-CCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIV-TKLGAFLKQAGFRDSDIEYVPCSGLTGE-NLTT 70 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~-~~l~~~l~~~~~~~~~~~iipiSA~~G~-ni~~ 70 (97)
.++|++.||+|+.+ +....... +..+.+.+..+++ ...+++++||++|. ++.+
T Consensus 113 ~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~~~~~ 167 (184)
T 2zej_A 113 SPVILVGTHLDVSD--EKQRKACMSKITKELLNKRGFP-AIRDYHFVNATEESDALAK 167 (184)
T ss_dssp CEEEEEEECGGGCC--HHHHHHHHHHHHHHTTTCTTSC-EEEEEEECCTTSCCHHHHH
T ss_pred CcEEEEEECCCccc--chhhHHHHHHHHHHHHHhcCCc-chhheEEEecccCchhHHH
Confidence 57899999999974 32222111 2222232222321 01249999999996 6543
No 158
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.41 E-value=0.00048 Score=48.50 Aligned_cols=47 Identities=21% Similarity=0.267 Sum_probs=30.4
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|+++||+|+.+ ... +......+.+..+ ++++++||.+|.|+.+.
T Consensus 111 ~pvilv~NK~Dl~~--~~~---i~~~~~~l~~~lg-----~~vi~~SA~~g~gi~el 157 (258)
T 3a1s_A 111 KKVILAMTAIDEAK--KTG---MKIDRYELQKHLG-----IPVVFTSSVTGEGLEEL 157 (258)
T ss_dssp CCEEEEEECHHHHH--HTT---CCBCHHHHHHHHC-----SCEEECCTTTCTTHHHH
T ss_pred CCEEEEEECcCCCC--ccc---hHHHHHHHHHHcC-----CCEEEEEeeCCcCHHHH
Confidence 46899999999753 100 0111233334445 58999999999998653
No 159
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.39 E-value=0.00049 Score=45.27 Aligned_cols=48 Identities=21% Similarity=0.122 Sum_probs=31.6
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeee-ccCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSG-LTGENLTT 70 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA-~~G~ni~~ 70 (97)
-.++|++.||+|+.+..+-. .++...+.+..+ .+++++|| .+|.|+.+
T Consensus 127 ~~piilv~nK~Dl~~~~~v~----~~~~~~~~~~~~-----~~~~e~Sa~~~g~gv~~ 175 (187)
T 3c5c_A 127 SIPALLLGNKLDMAQYRQVT----KAEGVALAGRFG-----CLFFEVSACLDFEHVQH 175 (187)
T ss_dssp CCCEEEEEECGGGGGGCSSC----HHHHHHHHHHHT-----CEEEECCSSSCSHHHHH
T ss_pred CCCEEEEEECcchhhcCccC----HHHHHHHHHHcC-----CcEEEEeecCccccHHH
Confidence 35799999999986411101 123344455444 48999999 89998854
No 160
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.31 E-value=0.00097 Score=44.22 Aligned_cols=48 Identities=19% Similarity=0.108 Sum_probs=29.7
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|++.||+|+.+... .. .++.+.+....+ .+++++||++|.|+.+.
T Consensus 115 ~piilV~NK~Dl~~~r~--v~--~~~~~~~a~~~~-----~~~~e~SA~~g~~v~~l 162 (192)
T 2cjw_A 115 IPIILVGNKSDLVRXRE--VS--VSEGRAXAVVFD-----XKFIETSAAVQHNVKEL 162 (192)
T ss_dssp CCEEEEEECTTCGGGCC--SC--HHHHHHHHHHTT-----CEEEECBTTTTBSHHHH
T ss_pred CeEEEEEechhhhcccc--cc--HHHHHHHHHHhC-----CceEEeccccCCCHHHH
Confidence 46999999999863111 00 111222222222 58999999999998654
No 161
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=96.26 E-value=0.001 Score=51.16 Aligned_cols=48 Identities=17% Similarity=0.148 Sum_probs=27.3
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|+|.||+|+.+..+-. .++++.+.+..+ .+++++||.+|.|+.+.
T Consensus 151 ~pvilV~NK~Dl~~~~~v~----~~~~~~~~~~~~-----~~~~~vSA~~g~gi~eL 198 (535)
T 3dpu_A 151 SPVIVVMNKIDENPSYNIE----QKKINERFPAIE-----NRFHRISCKNGDGVESI 198 (535)
T ss_dssp CCEEEEECCTTTCTTCCCC----HHHHHHHCGGGT-----TCEEECCC-----CTTH
T ss_pred CCEEEEEECCCcccccccC----HHHHHHHHHhcC-----CceEEEecCcccCHHHH
Confidence 5799999999987521111 123333443333 57999999999999765
No 162
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.23 E-value=0.0039 Score=45.72 Aligned_cols=54 Identities=17% Similarity=0.007 Sum_probs=31.7
Q ss_pred eEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCC--CCCCceEEEeeeccCCCCCCC
Q psy15201 16 QLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGF--RDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 16 ~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~--~~~~~~iipiSA~~G~ni~~~ 71 (97)
+.++++||+|+.+ .........++...++.... .....+++++||++|.|+.+.
T Consensus 214 ~~ivVlNK~Dl~~--~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L 269 (349)
T 2www_A 214 ADLVAVTKSDGDL--IVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEM 269 (349)
T ss_dssp CSEEEECCCSGGG--HHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHH
T ss_pred CCEEEEeeecCCC--chhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHH
Confidence 5688999999874 32222233333333322110 001358999999999998654
No 163
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.21 E-value=0.0057 Score=40.35 Aligned_cols=54 Identities=13% Similarity=0.138 Sum_probs=33.7
Q ss_pred cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++ +.+++.||+|+.. ........+.+..++..... ...++|+||+++.|+.+.
T Consensus 136 ~~~-~~~~v~nK~D~~s--~~~~~~~~~~~~~~~~~~~~---~~~~~~~Sal~~~~~~~l 189 (210)
T 1pui_A 136 SNI-AVLVLLTKADKLA--SGARKAQLNMVREAVLAFNG---DVQVETFSSLKKQGVDKL 189 (210)
T ss_dssp TTC-CEEEEEECGGGSC--HHHHHHHHHHHHHHHGGGCS---CEEEEECBTTTTBSHHHH
T ss_pred cCC-CeEEEEecccCCC--chhHHHHHHHHHHHHHhcCC---CCceEEEeecCCCCHHHH
Confidence 344 4678899999874 32222222344455543322 368999999999988653
No 164
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=96.20 E-value=0.00063 Score=47.71 Aligned_cols=49 Identities=22% Similarity=0.099 Sum_probs=30.3
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHh--CCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQA--GFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~--~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|+|+||+|+.+...... + .++.. .......+++++||.+|.|+.+.
T Consensus 193 ~~~i~V~NK~Dl~~~~~~~~----~----~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l 243 (299)
T 2aka_B 193 QRTIGVITKLDLMDEGTDAR----D----VLENKLLPLRRGYIGVVNRSQKDIDGKKDI 243 (299)
T ss_dssp SSEEEEEECGGGSCTTCCCH----H----HHTTCSSCCTTCEEECCCCCCBCTTSCBCH
T ss_pred CeEEEEEEccccCCCCchHH----H----HHhCCcCcCCCCcEEEECCChhhccccccH
Confidence 47899999999985211111 1 12211 11112368999999999999764
No 165
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=96.19 E-value=0.0067 Score=47.10 Aligned_cols=16 Identities=6% Similarity=-0.080 Sum_probs=13.6
Q ss_pred ceEEEeeeccCCCCCC
Q psy15201 55 IEYVPCSGLTGENLTT 70 (97)
Q Consensus 55 ~~iipiSA~~G~ni~~ 70 (97)
+|++++||++|.|+.+
T Consensus 251 ~PV~~gSA~~~~GV~~ 266 (528)
T 3tr5_A 251 TPIFFGSAINNFGVGE 266 (528)
T ss_dssp EEEEECBGGGTBSHHH
T ss_pred eEEEeccccCCccHHH
Confidence 5899999999999743
No 166
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.15 E-value=0.00073 Score=48.11 Aligned_cols=49 Identities=14% Similarity=0.278 Sum_probs=30.6
Q ss_pred cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
+|+ ++|+++||+|+.+ .... ......+.+..+ ++++++||.+|.|+.+.
T Consensus 106 ~~~-p~ilv~NK~Dl~~--~~~~---~~~~~~l~~~lg-----~~vi~~SA~~g~gi~el 154 (272)
T 3b1v_A 106 TGI-PVTIALNMIDVLD--GQGK---KINVDKLSYHLG-----VPVVATSALKQTGVDQV 154 (272)
T ss_dssp TCS-CEEEEEECHHHHH--HTTC---CCCHHHHHHHHT-----SCEEECBTTTTBSHHHH
T ss_pred cCC-CEEEEEEChhhCC--cCCc---HHHHHHHHHHcC-----CCEEEEEccCCCCHHHH
Confidence 344 6899999999752 1000 011222333334 58999999999998653
No 167
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.14 E-value=0.004 Score=44.78 Aligned_cols=49 Identities=12% Similarity=0.114 Sum_probs=28.9
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++++++||.|+.+ ++.....++++..+++..+ ++++++||.+| |+.+.
T Consensus 156 ~~iilV~~K~Dl~~--~~e~~~~~~~~~~~~~~~~-----~~~~e~Sa~~~-~v~e~ 204 (301)
T 2qnr_A 156 VNIVPVIAKADTLT--LKERERLKKRILDEIEEHN-----IKIYHLPDAES-DEDED 204 (301)
T ss_dssp SCEEEEECCGGGSC--HHHHHHHHHHHHHHHHHTT-----CCCCCCC----------
T ss_pred CCEEEEEEeCCCCC--HHHHHHHHHHHHHHHHHcC-----CeEEecCCccc-cccHH
Confidence 36899999999874 4444444566777776655 57899999999 88764
No 168
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=96.11 E-value=0.00072 Score=51.29 Aligned_cols=46 Identities=17% Similarity=0.230 Sum_probs=30.0
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|+++||+|+.+.... +..+.+.+.. ..+++++||.+|.|+.+.
T Consensus 141 ~piIvV~NK~Dl~~~~~~------~~~~~l~~~~-----g~~v~~vSAktg~gI~eL 186 (423)
T 3qq5_A 141 IPFVVVVNKIDVLGEKAE------ELKGLYESRY-----EAKVLLVSALQKKGFDDI 186 (423)
T ss_dssp CCEEEECCCCTTTTCCCT------HHHHHSSCCT-----TCCCCCCSSCCTTSTTTH
T ss_pred CCEEEEEeCcCCCCccHH------HHHHHHHHHc-----CCCEEEEECCCCCCHHHH
Confidence 368999999999863221 1111111111 368999999999998654
No 169
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=96.10 E-value=0.0022 Score=49.33 Aligned_cols=47 Identities=34% Similarity=0.316 Sum_probs=31.5
Q ss_pred CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 13 GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 13 Gvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.-+++|+++||+|+.+. . .. +++..+. +. ..+++++||++|.|+.+.
T Consensus 349 ~~~piivV~NK~DL~~~-~-~~----~~~~~~~---~~---~~~~i~iSAktg~Gi~eL 395 (482)
T 1xzp_A 349 KNKRYLVVINKVDVVEK-I-NE----EEIKNKL---GT---DRHMVKISALKGEGLEKL 395 (482)
T ss_dssp TTSSEEEEEEECSSCCC-C-CH----HHHHHHH---TC---STTEEEEEGGGTCCHHHH
T ss_pred cCCCEEEEEECcccccc-c-CH----HHHHHHh---cC---CCcEEEEECCCCCCHHHH
Confidence 34679999999999752 1 11 2222222 22 258999999999999765
No 170
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.06 E-value=0.0061 Score=44.56 Aligned_cols=54 Identities=22% Similarity=0.193 Sum_probs=31.3
Q ss_pred EEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCC-CC-CceEEEeeeccCCCCCCC
Q psy15201 17 LGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFR-DS-DIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 17 ~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~-~~-~~~iipiSA~~G~ni~~~ 71 (97)
.++++||+|+.+ ........++++...+...... .. ..+++++||++|.|+.+.
T Consensus 196 ~ivvlNK~Dl~~-~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L 251 (337)
T 2qm8_A 196 DMIAVNKADDGD-GERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSL 251 (337)
T ss_dssp SEEEEECCSTTC-CHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHH
T ss_pred cEEEEEchhccC-chhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHH
Confidence 477789999864 2333333334443333222200 00 358999999999998664
No 171
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=95.95 E-value=6.2e-05 Score=49.96 Aligned_cols=49 Identities=20% Similarity=0.185 Sum_probs=25.8
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++|+++||+|+.+..+... ++.+.+.+..+ .+++++||.+|.|+.+.
T Consensus 138 ~~p~ilv~nK~Dl~~~~~v~~----~~~~~~~~~~~-----~~~~~vSA~~g~gv~~l 186 (199)
T 3l0i_B 138 NVNKLLVGNKCDLTTKKVVDY----TTAKEFADSLG-----IPFLETSAKNATNVEQS 186 (199)
T ss_dssp CSEEEEC-CCSSCC--CCCCS----CC-CHHHHTTT-----CCBCCCCC---HHHHHH
T ss_pred CCCEEEEEECccCCccccCCH----HHHHHHHHHcC-----CeEEEEECCCCCCHHHH
Confidence 357899999999874211000 11223333333 57899999999998653
No 172
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.94 E-value=0.0011 Score=43.00 Aligned_cols=47 Identities=19% Similarity=0.226 Sum_probs=30.0
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|++.||+|+.+ .... ....+.+.+..+ .+++++||.+|.|+.+.
T Consensus 113 ~piilv~nK~Dl~~--~~~~---~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~l 159 (188)
T 2wjg_A 113 ANLLLALNKMDLAK--SLGI---EIDVDKLEKILG-----VKVVPLSAAKKMGIEEL 159 (188)
T ss_dssp CCEEEEEECHHHHH--HTTC---CCCHHHHHHHHT-----SCEEECBGGGTBSHHHH
T ss_pred CCEEEEEEhhhccc--cccc---hHHHHHHHHHhC-----CCeEEEEecCCCCHHHH
Confidence 36899999999752 1000 112233333334 48999999999998654
No 173
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.91 E-value=0.00022 Score=46.59 Aligned_cols=41 Identities=22% Similarity=0.159 Sum_probs=27.7
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|+++||+|+.+...+ +.+ ....+++++||++|.|+.+.
T Consensus 116 ~p~ilv~NK~Dl~~~~~~-----------~~~-----~~~~~~~~~SA~~g~gv~~l 156 (172)
T 2gj8_A 116 LPITVVRNKADITGETLG-----------MSE-----VNGHALIRLSARTGEGVDVL 156 (172)
T ss_dssp CCEEEEEECHHHHCCCCE-----------EEE-----ETTEEEEECCTTTCTTHHHH
T ss_pred CCEEEEEECccCCcchhh-----------hhh-----ccCCceEEEeCCCCCCHHHH
Confidence 468999999997531100 000 02368999999999998654
No 174
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=95.70 E-value=0.01 Score=44.83 Aligned_cols=47 Identities=28% Similarity=0.420 Sum_probs=31.3
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-++.|+++||+|+.. ...+ +++...++..+ .+++++||+++.|+.+.
T Consensus 269 ~~P~ILVlNKlDl~~--~~~~----~~l~~~l~~~g-----~~vi~iSA~~g~gi~eL 315 (416)
T 1udx_A 269 RRPSLVALNKVDLLE--EEAV----KALADALAREG-----LAVLPVSALTGAGLPAL 315 (416)
T ss_dssp HSCEEEEEECCTTSC--HHHH----HHHHHHHHTTT-----SCEEECCTTTCTTHHHH
T ss_pred cCCEEEEEECCChhh--HHHH----HHHHHHHHhcC-----CeEEEEECCCccCHHHH
Confidence 356788889999874 2222 33334443322 58999999999998543
No 175
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.63 E-value=0.013 Score=44.37 Aligned_cols=49 Identities=14% Similarity=0.154 Sum_probs=30.2
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
.++|+|+||+|+.. .......++++...++..+ ++++.+||.+++|+.+
T Consensus 168 v~iIlVinK~Dll~--~~ev~~~k~~i~~~~~~~~-----i~~~~~sa~~~~~v~~ 216 (418)
T 2qag_C 168 VNIIPLIAKADTLT--PEECQQFKKQIMKEIQEHK-----IKIYEFPETDDEEENK 216 (418)
T ss_dssp SEEEEEEESTTSSC--HHHHHHHHHHHHHHHHHHT-----CCCCCCC---------
T ss_pred CcEEEEEEcccCcc--HHHHHHHHHHHHHHHHHcC-----CeEEeCCCCCCcCHHH
Confidence 47999999999984 5566666677777777665 4667788888887754
No 176
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=95.58 E-value=0.018 Score=42.63 Aligned_cols=53 Identities=19% Similarity=0.174 Sum_probs=32.7
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
-.++|+|.||+|+.+.... ...+.+..+.+.... ...+++|+||++|.|+.+.
T Consensus 292 ~~p~ilV~NK~Dl~~~~~~---~~~~~~~~l~~~l~~--~~~~~~~~SA~~g~gi~~L 344 (364)
T 2qtf_A 292 GKPILVTLNKIDKINGDLY---KKLDLVEKLSKELYS--PIFDVIPISALKRTNLELL 344 (364)
T ss_dssp SCCEEEEEECGGGCCSCHH---HHHHHHHHHHHHHCS--CEEEEEECBTTTTBSHHHH
T ss_pred CCCEEEEEECCCCCCchHH---HHHHHHHHHHHHhcC--CCCcEEEEECCCCcCHHHH
Confidence 3579999999998753221 112223233333311 1357899999999998654
No 177
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=95.58 E-value=0.0038 Score=46.81 Aligned_cols=46 Identities=17% Similarity=0.247 Sum_probs=31.5
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
+++|+++||+|+. +.+..++++ ..+... ..+++|+||..+.++.+.
T Consensus 215 kP~i~v~NK~D~~--~~~~l~~l~----~~~~~~-----~~~vv~iSA~~e~~l~~L 260 (397)
T 1wxq_A 215 KPMVIAANKADAA--SDEQIKRLV----REEEKR-----GYIVIPTSAAAELTLRKA 260 (397)
T ss_dssp SCEEEEEECGGGS--CHHHHHHHH----HHHHHT-----TCEEEEECHHHHHHHHSC
T ss_pred CCEEEEEeCcccc--chHHHHHHH----HHHhhc-----CCcEEEEeccchhhHHHH
Confidence 7899999999987 333333332 222221 258999999999998654
No 178
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=95.45 E-value=0.0051 Score=46.18 Aligned_cols=44 Identities=25% Similarity=0.264 Sum_probs=28.5
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHH-HHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKL-GAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l-~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
+++|+++||+|+.+ . . ..+. .++. ..++ .+++++||.+|.|+.+
T Consensus 111 ~p~ilv~NK~D~~~--~-~----~~~~~~~~~-~lg~----~~~~~iSA~~g~gv~~ 155 (439)
T 1mky_A 111 VDTILVANKAENLR--E-F----EREVKPELY-SLGF----GEPIPVSAEHNINLDT 155 (439)
T ss_dssp CCEEEEEESCCSHH--H-H----HHHTHHHHG-GGSS----CSCEECBTTTTBSHHH
T ss_pred CCEEEEEeCCCCcc--c-c----HHHHHHHHH-hcCC----CCEEEEeccCCCCHHH
Confidence 57899999999752 1 1 1122 2332 3444 3679999999999854
No 179
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=94.96 E-value=0.0031 Score=47.32 Aligned_cols=43 Identities=30% Similarity=0.437 Sum_probs=26.6
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
+++|+++||+|+.+. . .++.++. ..++ .+++++||.+|.|+.+
T Consensus 112 ~pvilv~NK~D~~~~-~-------~~~~~~~-~lg~----~~~~~iSA~~g~gv~~ 154 (436)
T 2hjg_A 112 KPVVLAVNKLDNTEM-R-------ANIYDFY-SLGF----GEPYPISGTHGLGLGD 154 (436)
T ss_dssp SCEEEEEECCCC-------------CCCSSG-GGSS----CCCEECBTTTTBTHHH
T ss_pred CCEEEEEECccCccc-h-------hhHHHHH-HcCC----CCeEEEeCcCCCChHH
Confidence 579999999998741 1 1111122 2343 3679999999998744
No 180
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=94.61 E-value=0.0026 Score=51.76 Aligned_cols=49 Identities=22% Similarity=0.132 Sum_probs=30.8
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHH--hCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQ--AGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~--~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
+++|+|+||+|+++.... ... +++. ..+.....+++|+||.+|.|+.+.
T Consensus 218 ~pvIlVlNKiDlv~~~~~-~~~-------il~~~~~~l~lg~~~VV~iSA~~G~GvdeL 268 (772)
T 3zvr_A 218 QRTIGVITKLDLMDEGTD-ARD-------VLENKLLPLRRGYIGVVNRSQKDIDGKKDI 268 (772)
T ss_dssp SSEEEEEECTTSSCTTCC-SHH-------HHTTCSSCCSSCEEECCCCCCEESSSSEEH
T ss_pred CCEEEEEeCcccCCcchh-hHH-------HHHHHhhhhhccCCceEEecccccccchhH
Confidence 479999999999862211 111 1111 111113478999999999998664
No 181
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=94.59 E-value=0.011 Score=45.15 Aligned_cols=46 Identities=17% Similarity=0.109 Sum_probs=30.2
Q ss_pred CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 13 GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 13 Gvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.-+++|+++||+|+.+... .. .++ .+. ...+++++||.+|.|+.+.
T Consensus 329 ~~~piivV~NK~Dl~~~~~--~~--------~~~--~~~-~~~~~i~iSAktg~Gi~eL 374 (462)
T 3geh_A 329 KHRPLILVMNKIDLVEKQL--IT--------SLE--YPE-NITQIVHTAAAQKQGIDSL 374 (462)
T ss_dssp TTSCEEEEEECTTSSCGGG--ST--------TCC--CCT-TCCCEEEEBTTTTBSHHHH
T ss_pred cCCcEEEEEECCCCCcchh--hH--------HHH--Hhc-cCCcEEEEECCCCCCHHHH
Confidence 3368999999999985211 00 011 111 2368999999999998654
No 182
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=93.98 E-value=0.041 Score=43.90 Aligned_cols=50 Identities=20% Similarity=0.184 Sum_probs=27.3
Q ss_pred CCCeEEEEEEcCCCCCCC---H---HHHHHHHHHHHHH----HHHh-C---CCCCCceEEEeeec
Q psy15201 13 GVNQLGVVINKLDTVSWS---Q---DRFQEIVTKLGAF----LKQA-G---FRDSDIEYVPCSGL 63 (97)
Q Consensus 13 Gvk~~Iv~INK~D~v~~~---~---~~~~~i~~~l~~~----l~~~-~---~~~~~~~iipiSA~ 63 (97)
|. ++++++||+|+.+.. . +.+++..+.+... +... + +.....+++|+||.
T Consensus 230 ~~-~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk 293 (695)
T 2j69_A 230 GL-TVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSI 293 (695)
T ss_dssp CC-CEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHH
T ss_pred CC-CEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeCh
Confidence 44 599999999987421 1 1333333333322 2211 1 11123579999999
No 183
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.96 E-value=0.028 Score=36.89 Aligned_cols=48 Identities=19% Similarity=0.194 Sum_probs=31.1
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++++++||+|+.+..+... ++.+.+.+..+ ..++.+||+++.|+.+.
T Consensus 111 ~~i~~v~nK~Dl~~~~~~~~----~~a~~l~~~~~-----~~~~d~Sal~~~~i~~l 158 (199)
T 2f9l_A 111 IVIMLVGNKSDLRHLRAVPT----DEARAFAEKNN-----LSFIETSALDSTNVEEA 158 (199)
T ss_dssp CEEEEEEECTTCGGGCCSCH----HHHHHHHHHTT-----CEEEECCTTTCTTHHHH
T ss_pred CeEEEEEECcccccccCcCH----HHHHHHHHHcC-----CeEEEEeCCCCCCHHHH
Confidence 57899999999864211111 22334444333 58899999999988553
No 184
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.70 E-value=0.09 Score=36.44 Aligned_cols=54 Identities=6% Similarity=-0.054 Sum_probs=27.8
Q ss_pred CeEEEEEEcCCCCCCCH----HHHHHHHHHHHHHHHHh-CCCCC--CceEEEeeeccCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQ----DRFQEIVTKLGAFLKQA-GFRDS--DIEYVPCSGLTGENL 68 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~----~~~~~i~~~l~~~l~~~-~~~~~--~~~iipiSA~~G~ni 68 (97)
+++|+++||+|+.+.++ +..++..+.++.++++. +...- ....+|+|+..+...
T Consensus 152 ~~~ivv~nK~Dl~~~~~~~~e~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~pv~~ve~~~~ 212 (262)
T 3def_A 152 CKTLLVLTHAQFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQEFEDSAIAVVYAENSGR 212 (262)
T ss_dssp GGEEEEEECTTCCCSTTCCHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHCCEEEECCCCTT
T ss_pred cCEEEEEeCcccCCCCCccHHHHHHhhhHHHHHHHHHHhCccccccccccCCEEEEeCCCC
Confidence 47899999999874222 22333233455555443 22100 012266666665544
No 185
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=93.40 E-value=0.02 Score=43.14 Aligned_cols=43 Identities=30% Similarity=0.437 Sum_probs=23.8
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
+++|+++||+|+.+. . ....++. ..++ -+.+++||.+|.|+.+
T Consensus 132 ~pvilV~NK~D~~~~-~-------~~~~e~~-~lg~----~~~~~iSA~~g~gv~~ 174 (456)
T 4dcu_A 132 KPVVLAVNKLDNTEM-R-------ANIYDFY-SLGF----GEPYPISGTHGLGLGD 174 (456)
T ss_dssp SCEEEEEECC-----------------CCSG-GGSS----SSEEECCTTTCTTHHH
T ss_pred CCEEEEEECccchhh-h-------hhHHHHH-HcCC----CceEEeecccccchHH
Confidence 579999999998641 1 1111111 2233 3557999999998854
No 186
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=93.38 E-value=0.049 Score=43.43 Aligned_cols=47 Identities=23% Similarity=0.274 Sum_probs=29.6
Q ss_pred cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCC
Q psy15201 12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENL 68 (97)
Q Consensus 12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni 68 (97)
.++ ++|+++||+|+... .+.++.++++..+ +.. ....++|+|+ |.++
T Consensus 126 ~~~-p~ilviNK~Dl~~~---~~~~~~~~l~~~l---~~~-~~~~~ipisa--~~~~ 172 (693)
T 2xex_A 126 YGV-PRIVFVNKMDKLGA---NFEYSVSTLHDRL---QAN-AAPIQLPIGA--EDEF 172 (693)
T ss_dssp TTC-CEEEEEECTTSTTC---CHHHHHHHHHHHH---CCC-EEESEEEECC--GGGC
T ss_pred cCC-CEEEEEECCCcccc---chHHHHHHHHHHh---CCC-ceeEEeeccc--CCCc
Confidence 455 57899999999863 2444556666555 321 1246789998 5544
No 187
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=93.26 E-value=0.0047 Score=45.08 Aligned_cols=49 Identities=22% Similarity=0.098 Sum_probs=29.9
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCC--CCCCceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGF--RDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~--~~~~~~iipiSA~~G~ni~~~ 71 (97)
.++|+|+||+|+.+...+ .. .+++...+ .....+++++||.+|.|+.+.
T Consensus 198 ~~~i~V~NK~Dl~~~~~~-~~-------~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l 248 (353)
T 2x2e_A 198 QRTIGVITKLDLMDEGTD-AR-------DVLENKLLPLRRGYIGVVNRSQKDIDGKKDI 248 (353)
T ss_dssp TTEEEEEECGGGSCTTCC-CH-------HHHTTCSSCCTTCEEECCCCCHHHHHTTCCH
T ss_pred CceEEEeccccccCcchh-HH-------HHHhCCcccccCCceEEEeCCcccccccccH
Confidence 468999999999852211 11 11211111 112368899999999998654
No 188
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=92.93 E-value=0.055 Score=39.96 Aligned_cols=54 Identities=19% Similarity=0.330 Sum_probs=30.5
Q ss_pred CeEEEEEEcCCCCCCCHHHH---HHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRF---QEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~---~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
.+++++.||+|+.+ .++|. .++..+....+...++...+++++.+||++ .|+.+
T Consensus 107 ipillvgNK~DL~~-~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~e 163 (331)
T 3r7w_B 107 INIEVLIHKVDGLS-EDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYE 163 (331)
T ss_dssp CEEEEECCCCCSSC-SHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHH
T ss_pred CcEEEEEECcccCc-hhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHH
Confidence 47899999999985 23332 223332222221111111358999999987 46643
No 189
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=92.80 E-value=0.051 Score=40.09 Aligned_cols=54 Identities=11% Similarity=0.132 Sum_probs=32.7
Q ss_pred CCeEEEEEEcCCCCCCCHHH------------------HHHHHHHHHHHHHHhCC--CCCCceEEEeeeccCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDR------------------FQEIVTKLGAFLKQAGF--RDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~------------------~~~i~~~l~~~l~~~~~--~~~~~~iipiSA~~G~ni~~ 70 (97)
-.++|++.||+|+.+ ++ .++..+.+...+..+.. ....+.++.+||.+|.|+.+
T Consensus 260 ~~piiLv~NK~DL~~---~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~ 333 (353)
T 1cip_A 260 DTSIILFLNKKDLFE---EKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQF 333 (353)
T ss_dssp TSEEEEEEECHHHHH---HHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHH
T ss_pred CCcEEEEEECcCchh---hhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHH
Confidence 468999999999742 11 22333333322222211 12457899999999999854
No 190
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=92.47 E-value=0.064 Score=41.55 Aligned_cols=55 Identities=15% Similarity=0.091 Sum_probs=31.1
Q ss_pred eccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 10 AVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 10 ~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
+..|++ +|+++||+|+.+.+. .++.++++..+ +.+.-...+...||.++.|+.+.
T Consensus 131 ~~~~ip-iivviNK~Dl~~~~~---~~~~~~i~~~l---~~~~~~~~~pi~sa~~~~Gv~dl 185 (529)
T 2h5e_A 131 RLRDTP-ILTFMNKLDRDIRDP---MELLDEVENEL---KIGCAPITWPIGCGKLFKGVYHL 185 (529)
T ss_dssp TTTTCC-EEEEEECTTSCCSCH---HHHHHHHHHHH---CCEEEESEEEESCGGGCCEEEET
T ss_pred HHcCCC-EEEEEcCcCCccccH---HHHHHHHHHHh---CCCccceecceecccCcceeeeh
Confidence 335664 899999999986322 23445555544 32100112222588888887554
No 191
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.09 E-value=0.1 Score=33.64 Aligned_cols=14 Identities=14% Similarity=0.157 Sum_probs=12.3
Q ss_pred CeEEEEEEcCCCCC
Q psy15201 15 NQLGVVINKLDTVS 28 (97)
Q Consensus 15 k~~Iv~INK~D~v~ 28 (97)
.++++++||+|+.+
T Consensus 157 ~p~ilv~nK~Dl~~ 170 (193)
T 2ged_A 157 IDILIACNKSELFT 170 (193)
T ss_dssp CCEEEEEECTTSTT
T ss_pred CCEEEEEEchHhcC
Confidence 57999999999985
No 192
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.81 E-value=0.064 Score=35.11 Aligned_cols=48 Identities=21% Similarity=0.224 Sum_probs=30.6
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
-.++++++||+|+.+..+... +..+.+.+..+ ..++.+||+++.|+.+
T Consensus 134 ~~~i~~v~nK~Dl~~~~~~~~----~~a~~l~~~~~-----~~~ld~Sald~~~v~~ 181 (191)
T 1oix_A 134 NIVIMLVGNKSDLRHLRAVPT----DEARAFAEKNG-----LSFIETSALDSTNVEA 181 (191)
T ss_dssp TCEEEEEEECGGGGGGCCSCH----HHHHHHHHHTT-----CEEEECCTTTCTTHHH
T ss_pred CCcEEEEEECcccccccccCH----HHHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 357899999999864211111 22334444333 5889999999998754
No 193
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=91.55 E-value=0.2 Score=39.76 Aligned_cols=16 Identities=38% Similarity=0.366 Sum_probs=12.3
Q ss_pred ccCCCeEEEEEEcCCCC
Q psy15201 11 VSGVNQLGVVINKLDTV 27 (97)
Q Consensus 11 ~lGvk~~Iv~INK~D~v 27 (97)
..|+ ++|+++||+|+.
T Consensus 124 ~~~i-p~ilv~NKiD~~ 139 (665)
T 2dy1_A 124 RLGL-PRMVVVTKLDKG 139 (665)
T ss_dssp HTTC-CEEEEEECGGGC
T ss_pred HccC-CEEEEecCCchh
Confidence 3566 467889999986
No 194
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=91.41 E-value=0.11 Score=42.46 Aligned_cols=55 Identities=25% Similarity=0.244 Sum_probs=32.5
Q ss_pred cCCCeEEEEEEcCCCCC----CC----HHHHHHHHHHHHHHHHHh-----C---CCCCCceEEEeeeccCCC
Q psy15201 12 SGVNQLGVVINKLDTVS----WS----QDRFQEIVTKLGAFLKQA-----G---FRDSDIEYVPCSGLTGEN 67 (97)
Q Consensus 12 lGvk~~Iv~INK~D~v~----~~----~~~~~~i~~~l~~~l~~~-----~---~~~~~~~iipiSA~~G~n 67 (97)
.++ ++|+++||+|+.. .+ ...++++.++++..+... + +.+...++...||++|-+
T Consensus 149 ~~~-p~ilviNK~D~~~~e~~~~~~e~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~ 219 (842)
T 1n0u_A 149 ERI-KPVVVINKVDRALLELQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWA 219 (842)
T ss_dssp TTC-EEEEEEECHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEE
T ss_pred cCC-CeEEEEECCCcchhhhccCHHHHHHHHHHHHHHHHHHHhhccccccCceeeceEEeeeEEeecccccc
Confidence 354 5789999999862 11 234566666666665431 1 322223577789988743
No 195
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=91.37 E-value=0.018 Score=39.63 Aligned_cols=54 Identities=13% Similarity=-0.020 Sum_probs=30.1
Q ss_pred CeEEEEEE-cCCCCCCCHHHHHHHH----HHHHHHHHHhCCCCC-CceEEEeeeccCCCCCCC
Q psy15201 15 NQLGVVIN-KLDTVSWSQDRFQEIV----TKLGAFLKQAGFRDS-DIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 15 k~~Iv~IN-K~D~v~~~~~~~~~i~----~~l~~~l~~~~~~~~-~~~iipiSA~~G~ni~~~ 71 (97)
.+.|+++| |+|+.+.+.. ..+. .+++.+++.++.... ..+ +|+||.+|.|+.+.
T Consensus 139 ~~~i~vv~nK~Dl~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~SA~~~~gv~~l 198 (260)
T 2xtp_A 139 GHTIVLFTHKEDLNGGSLM--DYMHDSDNKALSKLVAACGGRICAFNN-RAEGSNQDDQVKEL 198 (260)
T ss_dssp GGEEEEEECGGGGTTCCHH--HHHHHCCCHHHHHHHHHTTTCEEECCT-TCCHHHHHHHHHHH
T ss_pred ccEEEEEEcccccCCccHH--HHHHhcchHHHHHHHHHhCCeEEEecC-cccccccHHHHHHH
Confidence 35677777 9999853211 1111 234445555442100 112 88999999988654
No 196
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=90.97 E-value=0.012 Score=41.49 Aligned_cols=14 Identities=36% Similarity=0.330 Sum_probs=12.3
Q ss_pred CeEEEEEEcCCCCC
Q psy15201 15 NQLGVVINKLDTVS 28 (97)
Q Consensus 15 k~~Iv~INK~D~v~ 28 (97)
.++|+++||+|+++
T Consensus 199 ~~~i~v~NK~Dl~~ 212 (315)
T 1jwy_B 199 KRTIGVITKLDLMD 212 (315)
T ss_dssp SSEEEEEECTTSSC
T ss_pred CcEEEEEcCcccCC
Confidence 47899999999986
No 197
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=90.54 E-value=0.044 Score=40.58 Aligned_cols=57 Identities=11% Similarity=0.072 Sum_probs=31.2
Q ss_pred CCeEEEEEEcCCCCCC----------------CHHHHHHHHHHHHHHHHHhCCC--CCCceEEEeeeccCCCCCC
Q psy15201 14 VNQLGVVINKLDTVSW----------------SQDRFQEIVTKLGAFLKQAGFR--DSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~----------------~~~~~~~i~~~l~~~l~~~~~~--~~~~~iipiSA~~G~ni~~ 70 (97)
-.++|++.||+|+.+. .....++..+.+...+..+.-. .....++++||.+|.|+.+
T Consensus 268 ~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~ 342 (362)
T 1zcb_A 268 NVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRL 342 (362)
T ss_dssp TSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHH
T ss_pred CCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHH
Confidence 4589999999997410 0011233333222222221111 2347889999999998854
No 198
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=90.34 E-value=0.12 Score=41.20 Aligned_cols=44 Identities=18% Similarity=0.168 Sum_probs=26.8
Q ss_pred ccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeee
Q psy15201 11 VSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSG 62 (97)
Q Consensus 11 ~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA 62 (97)
..++ ++|+++||+|+...+ +.++.++++..+ +.. ....++|+|+
T Consensus 127 ~~~~-p~ivviNKiD~~~~~---~~~~~~~l~~~l---~~~-~~~~~~Pi~~ 170 (691)
T 1dar_A 127 KYKV-PRIAFANKMDKTGAD---LWLVIRTMQERL---GAR-PVVMQLPIGR 170 (691)
T ss_dssp HTTC-CEEEEEECTTSTTCC---HHHHHHHHHHTT---CCC-EEECEEEESC
T ss_pred HcCC-CEEEEEECCCcccCC---HHHHHHHHHHHh---CCC-ccceeccccC
Confidence 3455 578899999998632 444555555544 321 1245688887
No 199
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=89.41 E-value=0.25 Score=34.23 Aligned_cols=77 Identities=16% Similarity=0.255 Sum_probs=37.1
Q ss_pred CeEEEEEEcCCCCCCC----HHHHHHHHHHHHHHHHH-hCCC-CCCceEEEeeeccCCCCCC--C-CC--CCCCCCcccc
Q psy15201 15 NQLGVVINKLDTVSWS----QDRFQEIVTKLGAFLKQ-AGFR-DSDIEYVPCSGLTGENLTT--P-SQ--VPALTSWYSG 83 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~----~~~~~~i~~~l~~~l~~-~~~~-~~~~~iipiSA~~G~ni~~--~-~~--~~~~~~W~~g 83 (97)
.++|+++||+|+.+.+ ++..+++.+.++.+++. .++. .-....+|+++..+.+... . .. .+...+|+
T Consensus 155 ~~iivV~nK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~v~~~~~~~~~~~~~~v~~~~~~w~-- 232 (270)
T 1h65_A 155 NKAIVALTHAQFSPPDGLPYDEFFSKRSEALLQVVRSGASLKKDAQASDIPVVLIENSGRCNKNDSDEKVLPNGIAWI-- 232 (270)
T ss_dssp GGEEEEEECCSCCCGGGCCHHHHHHHHHHHHHHHHHHHTTCCTTSGGGCCCEEECCCCTTCCBCTTSCBBCTTSCBHH--
T ss_pred cCEEEEEECcccCCcCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCEEEEeCCCcccccCCCceECCCCCCcH--
Confidence 4799999999997532 12233344555555543 2221 0011224455444433211 0 10 01236784
Q ss_pred CchHHHhccc
Q psy15201 84 PCLLDVIGLS 93 (97)
Q Consensus 84 ~tlle~ld~~ 93 (97)
+.|++.|+.+
T Consensus 233 ~~Ll~~l~~~ 242 (270)
T 1h65_A 233 PHLVQTITEV 242 (270)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4777776543
No 200
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=88.75 E-value=0.47 Score=36.82 Aligned_cols=34 Identities=12% Similarity=0.190 Sum_probs=23.6
Q ss_pred ceeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q psy15201 8 KSAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFL 45 (97)
Q Consensus 8 ~~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l 45 (97)
.|+..|++ .|++|||||+.. ..+.++.++++..+
T Consensus 147 ~a~~~~lp-~i~fINK~Dr~~---ad~~~~~~~i~~~l 180 (548)
T 3vqt_A 147 VCRMRATP-VMTFVNKMDREA---LHPLDVMADIEQHL 180 (548)
T ss_dssp HHHHTTCC-EEEEEECTTSCC---CCHHHHHHHHHHHH
T ss_pred HHHHhCCc-eEEEEecccchh---cchhHhhhhhhhhc
Confidence 35557775 588899999975 34556666676665
No 201
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=87.87 E-value=0.2 Score=39.50 Aligned_cols=20 Identities=25% Similarity=0.252 Sum_probs=15.2
Q ss_pred ceeccCCCeEEEEEEcCCCCC
Q psy15201 8 KSAVSGVNQLGVVINKLDTVS 28 (97)
Q Consensus 8 ~~~~lGvk~~Iv~INK~D~v~ 28 (97)
.|...|++. |++|||||+..
T Consensus 114 ~a~~~~lp~-i~~INKmDr~~ 133 (638)
T 3j25_A 114 ALRKMGIPT-IFFINKIDQNG 133 (638)
T ss_dssp HHHHHTCSC-EECCEECCSSS
T ss_pred HHHHcCCCe-EEEEecccccc
Confidence 355678875 77899999875
No 202
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=87.50 E-value=0.46 Score=32.04 Aligned_cols=45 Identities=11% Similarity=0.204 Sum_probs=24.0
Q ss_pred CeEEEEEEcCCCCCCC--HHHHHHHHHHHHHHHHHhCCCCCCceEEEeeecc
Q psy15201 15 NQLGVVINKLDTVSWS--QDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLT 64 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~--~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~ 64 (97)
+++|+++||+|+.+.. ++.+....+.++.+++..+. .++++++..
T Consensus 146 ~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~-----~~~~~~~~~ 192 (239)
T 3lxx_A 146 SFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGD-----RYCALNNKA 192 (239)
T ss_dssp GGEEEEEECGGGC------------CHHHHHHHHHHSS-----SEEECCTTC
T ss_pred ceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCC-----EEEEEECCC
Confidence 3799999999987511 11122222356667776653 455665543
No 203
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=86.37 E-value=0.072 Score=38.67 Aligned_cols=47 Identities=15% Similarity=0.184 Sum_probs=28.8
Q ss_pred eEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 16 QLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 16 ~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
++|+++||+|+++..... ...++.... +...+++++|+..+.++.+.
T Consensus 205 ~~i~V~nK~Dl~~~~~~~--------~~~~~~~~~-~~~~~~~~v~~~s~~~i~~~ 251 (360)
T 3t34_A 205 RTFGVLTKIDLMDKGTDA--------VEILEGRSF-KLKYPWVGVVNRSQADINKN 251 (360)
T ss_dssp TEEEEEECGGGCCTTCCS--------HHHHTTSSS-CCSSCCEEECCCCHHHHHTT
T ss_pred CEEEEEeCCccCCCcccH--------HHHHcCccc-cccCCeEEEEECChHHhccC
Confidence 689999999998522111 111221111 12368899999998887654
No 204
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=84.22 E-value=0.46 Score=36.07 Aligned_cols=31 Identities=19% Similarity=0.232 Sum_probs=21.9
Q ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHH
Q psy15201 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLK 46 (97)
Q Consensus 14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~ 46 (97)
-.++|+++||+|+.. .+....++..+..-++
T Consensus 176 ~~~vI~Vi~KtD~Lt--~~E~~~l~~~I~~~L~ 206 (427)
T 2qag_B 176 KVNIIPIIAKADAIS--KSELTKFKIKITSELV 206 (427)
T ss_dssp CSEEEEEESCGGGSC--HHHHHHHHHHHHHHHB
T ss_pred CCCEEEEEcchhccc--hHHHHHHHHHHHHHHH
Confidence 457999999999884 4555666666665444
No 205
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=82.85 E-value=0.56 Score=34.70 Aligned_cols=52 Identities=17% Similarity=0.026 Sum_probs=33.6
Q ss_pred cCCCeEEEEEEcCC--CCCC-CHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCC
Q psy15201 12 SGVNQLGVVINKLD--TVSW-SQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72 (97)
Q Consensus 12 lGvk~~Iv~INK~D--~v~~-~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~ 72 (97)
+--+++|++.||.| +.+- ... ..+.++.+.+..+ .+++|+||..+.++.+..
T Consensus 199 lt~KPvi~v~N~~e~d~~~~~~n~----~~~~v~~~a~~~g-----~~vv~iSAk~E~el~eL~ 253 (368)
T 2dby_A 199 LTAKPVIYVANVAEEDLPDGRGNP----QVEAVRRKALEEG-----AEVVVVSARLEAELAELS 253 (368)
T ss_dssp GGGSCEEEEEECCGGGTTTCTTCH----HHHHHHHHHHHHT-----CEEEEECHHHHHHHHTSC
T ss_pred hhcCCeEEeccccHHhhcccchhh----HHHHHHHHHHHcC-----CeEEEeechhHHHHHHhc
Confidence 44589999999997 3321 012 2344555555444 589999999987776553
No 206
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=82.76 E-value=2.1 Score=29.24 Aligned_cols=36 Identities=17% Similarity=0.050 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHH--HHHHHHHHHHhCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEI--VTKLGAFLKQAGF 50 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i--~~~l~~~l~~~~~ 50 (97)
.++|++.||+|+.+.+.+.+-.. .+.++.+++.++.
T Consensus 140 ~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~ 177 (247)
T 3lxw_A 140 WMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGG 177 (247)
T ss_dssp GEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTT
T ss_pred cEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcCC
Confidence 47899999999975332222111 1346777777653
No 207
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=81.87 E-value=0.61 Score=32.82 Aligned_cols=47 Identities=11% Similarity=-0.106 Sum_probs=28.3
Q ss_pred eEEEEEEcC-CCCC-CCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 16 QLGVVINKL-DTVS-WSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 16 ~~Iv~INK~-D~v~-~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
++.|.-||. |+.+ -+. .++.+. +.-.... ....|.++||++|+|+.+
T Consensus 164 pLLVlANKqqDlp~Ams~---~EI~e~----L~L~~l~-R~W~Iq~csA~TGeGL~E 212 (227)
T 3l82_B 164 PLLVLSCISQGDVKRMPC---FYLAHE----LHLNLLN-HPWLVQDTEAETLTGFLN 212 (227)
T ss_dssp CEEEEEEESSTTSCBCCH---HHHHHH----TTGGGGC-SCEEEEEEETTTCTTHHH
T ss_pred eEEEEeCCCcCccCCCCH---HHHHHH----cCCcCCC-CCEEEEEeECCCCcCHHH
Confidence 677778985 6653 122 222222 2111122 468999999999999865
No 208
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=80.97 E-value=1.8 Score=34.46 Aligned_cols=33 Identities=27% Similarity=0.312 Sum_probs=21.9
Q ss_pred eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q psy15201 9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFL 45 (97)
Q Consensus 9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l 45 (97)
|...|++ .|++|||||+... .+..+.++++..+
T Consensus 133 a~~~~lp-~i~~iNKiDr~~a---~~~~~~~ei~~~l 165 (709)
T 4fn5_A 133 ANKYGVP-RIVYVNKMDRQGA---NFLRVVEQIKKRL 165 (709)
T ss_dssp HHHHTCC-EEEEEECSSSTTC---CHHHHHHHHHHHH
T ss_pred HHHcCCC-eEEEEccccccCc---cHHHHHHHhhhhc
Confidence 4556786 5888999998752 3445556665555
No 209
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=79.87 E-value=1.4 Score=34.09 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=18.5
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHH
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLG 42 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~ 42 (97)
.++|+++||+|+++ ++.+.++..++.
T Consensus 219 ~pvilVlNK~Dl~~--~~el~~~~~~l~ 244 (550)
T 2qpt_A 219 DKIRVVLNKADMVE--TQQLMRVYGALM 244 (550)
T ss_dssp GGEEEEEECGGGSC--HHHHHHHHHHHH
T ss_pred CCEEEEEECCCccC--HHHHHHHHHHhh
Confidence 46899999999985 555555555554
No 210
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=79.37 E-value=0.6 Score=34.34 Aligned_cols=16 Identities=6% Similarity=0.090 Sum_probs=13.3
Q ss_pred ceEEEeeeccCCCCCC
Q psy15201 55 IEYVPCSGLTGENLTT 70 (97)
Q Consensus 55 ~~iipiSA~~G~ni~~ 70 (97)
..++.+||++|.|+.+
T Consensus 319 ~~~~eTSA~d~~nV~~ 334 (354)
T 2xtz_A 319 FKIYRTTALDQKLVKK 334 (354)
T ss_dssp EEEEECCTTCHHHHHH
T ss_pred eEEEEEEeecchhHHH
Confidence 5678999999999854
No 211
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=78.79 E-value=3 Score=29.20 Aligned_cols=33 Identities=24% Similarity=0.253 Sum_probs=24.4
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAG 49 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~ 49 (97)
..+|+++||+|+.. .+.....++.+...++..+
T Consensus 141 ~~vI~Vi~K~D~lt--~~e~~~~k~~i~~~l~~~~ 173 (270)
T 3sop_A 141 VNIIPVIAKADTMT--LEEKSEFKQRVRKELEVNG 173 (270)
T ss_dssp SEEEEEETTGGGSC--HHHHHHHHHHHHHHHHHTT
T ss_pred CcEEEEEeccccCC--HHHHHHHHHHHHHHHHHcC
Confidence 67999999999884 5556666777776666544
No 212
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=78.13 E-value=1.6 Score=34.79 Aligned_cols=32 Identities=22% Similarity=0.272 Sum_probs=21.4
Q ss_pred eccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q psy15201 10 AVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFL 45 (97)
Q Consensus 10 ~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l 45 (97)
...++ ++|+++||+|+... .+.++.++++..+
T Consensus 131 ~~~~i-p~ilviNKiD~~~~---~~~~~~~~l~~~l 162 (704)
T 2rdo_7 131 NKYKV-PRIAFVNKMDRMGA---NFLKVVNQIKTRL 162 (704)
T ss_pred HHcCC-CEEEEEeCCCcccc---cHHHHHHHHHHHh
Confidence 34566 46788999998752 3556666666655
No 213
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=77.32 E-value=0.68 Score=33.83 Aligned_cols=57 Identities=16% Similarity=0.006 Sum_probs=32.1
Q ss_pred CCCeEEEEEEcCCCCCCC----------------HHHHHHHHHHHHHHHHHhCC-CCCCceEEEeeeccCCCCC
Q psy15201 13 GVNQLGVVINKLDTVSWS----------------QDRFQEIVTKLGAFLKQAGF-RDSDIEYVPCSGLTGENLT 69 (97)
Q Consensus 13 Gvk~~Iv~INK~D~v~~~----------------~~~~~~i~~~l~~~l~~~~~-~~~~~~iipiSA~~G~ni~ 69 (97)
.-.++|++.||+|+.+.. ....++..+.+...+....- ....+.++.+||.++.|+.
T Consensus 233 ~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~ 306 (327)
T 3ohm_A 233 QNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIR 306 (327)
T ss_dssp TTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHH
T ss_pred CCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHH
Confidence 345899999999974200 00123333333332222221 1234678889999998874
No 214
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=74.77 E-value=1.3 Score=32.55 Aligned_cols=47 Identities=11% Similarity=-0.102 Sum_probs=28.0
Q ss_pred eEEEEEEc-CCCCC-CCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201 16 QLGVVINK-LDTVS-WSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70 (97)
Q Consensus 16 ~~Iv~INK-~D~v~-~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~ 70 (97)
++.|.-|| -|+.+ -+. .++.+. +.-.... ....|.++||.+|+|+.+
T Consensus 249 pLLVfANKkQDlp~Ams~---~EI~e~----L~L~~l~-r~W~Iq~csA~tGeGL~E 297 (312)
T 3l2o_B 249 PLLVLSCISQGDVKRMPC---FYLAHE----LHLNLLN-HPWLVQDTEAETLTGFLN 297 (312)
T ss_dssp CEEEEEEESSTTSCBCCH---HHHHHH----TTGGGGC-SCEEEEEEETTTCTTHHH
T ss_pred eEEEEeCCcccccCCCCH---HHHHHH----cCCccCC-CcEEEEecccCCCcCHHH
Confidence 67777786 57754 122 222222 2111122 468999999999999865
No 215
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=66.78 E-value=1.9 Score=32.42 Aligned_cols=17 Identities=12% Similarity=-0.093 Sum_probs=13.7
Q ss_pred CceEEEeeeccCCCCCC
Q psy15201 54 DIEYVPCSGLTGENLTT 70 (97)
Q Consensus 54 ~~~iipiSA~~G~ni~~ 70 (97)
.+.++.+||.+|.|+.+
T Consensus 358 ~~~~~~TSA~d~~nV~~ 374 (402)
T 1azs_C 358 YCYPHFTCAVDTENIRR 374 (402)
T ss_dssp CEEEEECCTTCHHHHHH
T ss_pred ccEEEEEEeecCcCHHH
Confidence 46778899999999854
No 216
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=66.51 E-value=3.8 Score=30.28 Aligned_cols=53 Identities=8% Similarity=0.052 Sum_probs=33.5
Q ss_pred ccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCC
Q psy15201 11 VSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72 (97)
Q Consensus 11 ~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~ 72 (97)
.+--+|+|++.||.|.--.... ..+.++.+.+..+ .++||+||.....+.+.+
T Consensus 196 llt~KPvi~v~N~~e~~~~~n~----~~~~v~~~~~~~~-----~~~i~~sA~~E~el~~l~ 248 (363)
T 1jal_A 196 FLTLKPTMYIANVNEDGFENNP----YLDRVREIAAKEG-----AVVVPVCAAIESEIAELD 248 (363)
T ss_dssp CSTTSCEEEEEECCTTCSSSCH----HHHHHHHHHHHTT-----CEEEEECHHHHHHGGGSC
T ss_pred cccCCcEEEEEecccccccccH----HHHHHHHHHHHcC-----CCEEEechHHHHHHHhcC
Confidence 3556899999999985311122 2344444444333 589999998877665543
No 217
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=64.12 E-value=1.3 Score=32.50 Aligned_cols=15 Identities=20% Similarity=0.149 Sum_probs=12.3
Q ss_pred CCCeEEEEEEcCCCC
Q psy15201 13 GVNQLGVVINKLDTV 27 (97)
Q Consensus 13 Gvk~~Iv~INK~D~v 27 (97)
.-.++|++.||+|+.
T Consensus 227 ~~~piiLv~NK~DL~ 241 (340)
T 4fid_A 227 KGAVKLIFLNKMDLF 241 (340)
T ss_dssp TTSEEEEEEECHHHH
T ss_pred CCCeEEEEEECchhh
Confidence 345899999999975
No 218
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=59.78 E-value=5.8 Score=29.74 Aligned_cols=54 Identities=9% Similarity=0.077 Sum_probs=28.7
Q ss_pred CeEEEEEEcCCCCC-------CCHHHHHHHHHHHHHHH----HHhCCCCCCceEEEeee--ccCCCCCC
Q psy15201 15 NQLGVVINKLDTVS-------WSQDRFQEIVTKLGAFL----KQAGFRDSDIEYVPCSG--LTGENLTT 70 (97)
Q Consensus 15 k~~Iv~INK~D~v~-------~~~~~~~~i~~~l~~~l----~~~~~~~~~~~iipiSA--~~G~ni~~ 70 (97)
+++++++||.|+.- -+....+++.+.++.+. +..+. +...+|++|+ +.+.|+.+
T Consensus 176 ~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~--~~~~iiliSsh~l~~~~~e~ 242 (413)
T 1tq4_A 176 KEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGI--AEPPIFLLSNKNVCHYDFPV 242 (413)
T ss_dssp CEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTC--SSCCEEECCTTCTTSTTHHH
T ss_pred CCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCC--CCCcEEEEecCcCCccCHHH
Confidence 57899999998641 01111223333444433 23332 2357899999 45544543
No 219
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=56.95 E-value=6.1 Score=29.30 Aligned_cols=40 Identities=28% Similarity=0.217 Sum_probs=25.5
Q ss_pred eEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 16 QLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 16 ~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
+.|+++||+|... .+ ++..+. . ...++|+|+..+.|+++.
T Consensus 251 p~i~v~nKid~~~--~e-------ele~l~---~----~~~~~~is~~~e~gLd~L 290 (376)
T 4a9a_A 251 PAIYVLNKIDSLS--IE-------ELELLY---R----IPNAVPISSGQDWNLDEL 290 (376)
T ss_dssp CEEEEEECGGGSC--HH-------HHHHHT---T----STTEEECCTTTCTTHHHH
T ss_pred ceEEEEecccccC--HH-------HHHHHh---c----ccchhhhhhhhcccchhH
Confidence 6899999999874 22 222211 1 135788999888877543
No 220
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=35.55 E-value=45 Score=24.91 Aligned_cols=14 Identities=21% Similarity=0.375 Sum_probs=11.0
Q ss_pred CeEEEEEEcCCCCC
Q psy15201 15 NQLGVVINKLDTVS 28 (97)
Q Consensus 15 k~~Iv~INK~D~v~ 28 (97)
+-..+++||+|...
T Consensus 239 ~i~gvVlnK~D~~~ 252 (432)
T 2v3c_C 239 EIGSIIVTKLDGSA 252 (432)
T ss_dssp SCEEEEEECSSSCS
T ss_pred CCeEEEEeCCCCcc
Confidence 33789999999764
No 221
>2k1h_A Uncharacterized protein Ser13; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Staphylococcus epidermidis}
Probab=33.58 E-value=38 Score=20.23 Aligned_cols=27 Identities=19% Similarity=0.342 Sum_probs=17.5
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q psy15201 18 GVVINKLDTVSWSQDRFQEIVTKLGAFL 45 (97)
Q Consensus 18 Iv~INK~D~v~~~~~~~~~i~~~l~~~l 45 (97)
-|.|+|-|-++| +....++.+.+.+++
T Consensus 60 FITVtK~~~~dW-~~ikp~I~~~I~~~~ 86 (94)
T 2k1h_A 60 FISIDKEDNANW-NELLPQIENTFAKSN 86 (94)
T ss_dssp EEEEEECTTCCH-HHHHHHHHHHHHHHC
T ss_pred EEEEecCCCCCH-HHHHHHHHHHHHHHH
Confidence 467999998888 444455555555544
No 222
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=33.56 E-value=23 Score=26.26 Aligned_cols=51 Identities=12% Similarity=0.170 Sum_probs=29.2
Q ss_pred ccCCCeEEEEEEcCCC--CCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCC
Q psy15201 11 VSGVNQLGVVINKLDT--VSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENL 68 (97)
Q Consensus 11 ~lGvk~~Iv~INK~D~--v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni 68 (97)
.+--++++.++|+.|. .....+. .++++.+.+..+ ...++||+||.....+
T Consensus 221 ~lt~kp~~y~~Nv~e~~~~~~~~~~----~~~~~~~~~~~~---p~~~~v~~sa~~E~~l 273 (392)
T 1ni3_A 221 LLTAKPVIYLVNMSERDFLRQKNKY----LPKIKKWIDENS---PGDTLIPMSVAFEERL 273 (392)
T ss_dssp CGGGSCEEEEEECCHHHHTTTCCSS----HHHHHHHHHTTS---TTCCEEEECHHHHHHH
T ss_pred hhccCceEEEEEecchhhcccchHH----HHHHHHHHHhcC---CCCeEEEEEhHHHHHH
Confidence 3456899999999982 1000111 233444444322 1257999999874433
No 223
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=31.12 E-value=66 Score=18.79 Aligned_cols=34 Identities=15% Similarity=0.248 Sum_probs=23.7
Q ss_pred eEEEEEEcCCCCC-CCHHHHHHHHHHHHHHHHHhC
Q psy15201 16 QLGVVINKLDTVS-WSQDRFQEIVTKLGAFLKQAG 49 (97)
Q Consensus 16 ~~Iv~INK~D~v~-~~~~~~~~i~~~l~~~l~~~~ 49 (97)
++|++.|-.|..+ .+...++++.+.++....+.|
T Consensus 6 ~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G 40 (105)
T 3v4m_A 6 EVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYG 40 (105)
T ss_dssp SEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTS
T ss_pred eEEEEECCCCHHHccChHHHHHHHHHHHHHHHccC
Confidence 4677777666332 245678899999998887655
No 224
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=30.70 E-value=1.1e+02 Score=23.11 Aligned_cols=43 Identities=14% Similarity=0.108 Sum_probs=24.7
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCC
Q psy15201 15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72 (97)
Q Consensus 15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~ 72 (97)
....+++||+|....... +.......+ .|+..++. |++++...
T Consensus 240 ~i~gVIlTKlD~~~~gG~--------~ls~~~~~g-----~PI~fig~--Ge~vddL~ 282 (443)
T 3dm5_A 240 PIGSIIVTKLDGSAKGGG--------ALSAVAATG-----APIKFIGT--GEKIDDIE 282 (443)
T ss_dssp TTEEEEEECCSSCSSHHH--------HHHHHHTTC-----CCEEEEEC--SSSTTCEE
T ss_pred CCeEEEEECCCCcccccH--------HHHHHHHHC-----CCEEEEEc--CCChHHhh
Confidence 345789999998742111 112222233 57777764 88886543
No 225
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=28.00 E-value=30 Score=25.76 Aligned_cols=48 Identities=10% Similarity=0.158 Sum_probs=27.1
Q ss_pred ccCCCeEEEEEEcCC--CCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccC
Q psy15201 11 VSGVNQLGVVINKLD--TVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTG 65 (97)
Q Consensus 11 ~lGvk~~Iv~INK~D--~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G 65 (97)
.+--++++.++|+.+ ..+.+ ++....++++.+..+ ...++||+||...
T Consensus 219 llt~KPviy~~Nv~e~~~~~~~----n~~~~~v~~~~~~~~---~~~~~v~~sa~~E 268 (396)
T 2ohf_A 219 FLTSKPMVYLVNLSEKDYIRKK----NKWLIKIKEWVDKYD---PGALVIPFSGALE 268 (396)
T ss_dssp CGGGSCEEEEEECCHHHHHHTC----CHHHHHHHHHHHHHS---TTCEEEEECHHHH
T ss_pred HHhCCceEEEEEecHHHhcccc----cHHHHHHHHHHHhhC---CCCeEEEEEcHHH
Confidence 345589999999963 11000 122333444443321 2368999999865
No 226
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=24.17 E-value=73 Score=24.37 Aligned_cols=11 Identities=36% Similarity=0.619 Sum_probs=9.5
Q ss_pred EEEEEcCCCCC
Q psy15201 18 GVVINKLDTVS 28 (97)
Q Consensus 18 Iv~INK~D~v~ 28 (97)
++++||+|...
T Consensus 244 gvVlNK~D~~~ 254 (504)
T 2j37_W 244 SVIVTKLDGHA 254 (504)
T ss_dssp CEEEECTTSCC
T ss_pred EEEEeCCcccc
Confidence 78899999874
No 227
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=22.98 E-value=2e+02 Score=21.47 Aligned_cols=41 Identities=17% Similarity=0.102 Sum_probs=23.4
Q ss_pred eEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201 16 QLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP 71 (97)
Q Consensus 16 ~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~ 71 (97)
...+++||+|.... - .. +.......+ .|+..++. |++++..
T Consensus 240 ~~gVIlTKlD~~a~-~---G~----als~~~~~g-----~Pi~fig~--Ge~v~dL 280 (433)
T 3kl4_A 240 IGSVIITKMDGTAK-G---GG----ALSAVVATG-----ATIKFIGT--GEKIDEL 280 (433)
T ss_dssp SEEEEEECGGGCSC-H---HH----HHHHHHHHT-----CEEEEEEC--CSSSSCE
T ss_pred CcEEEEeccccccc-c---hH----HHHHHHHHC-----CCEEEEEC--CCChHhC
Confidence 35788999997641 1 11 111222234 58887774 8887543
No 228
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=22.07 E-value=1.8e+02 Score=19.27 Aligned_cols=46 Identities=11% Similarity=0.167 Sum_probs=26.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCC
Q psy15201 24 LDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLT 69 (97)
Q Consensus 24 ~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~ 69 (97)
|++.+++.+.++.+.+++...+....-....-.+|-+.+..|.|-.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKS 46 (253)
T 2p5t_B 1 MEIQDYTDSEFKHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKT 46 (253)
T ss_dssp --CCCCCHHHHHHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTH
T ss_pred CchhhcCHHHHHHHHHHHHHHHHccCCcccCCeEEEEECCCCCCHH
Confidence 5666788888888877775433221111222356778888887753
No 229
>4e8b_A Ribosomal RNA small subunit methyltransferase E; 16S rRNA methyltransferase; 2.25A {Escherichia coli}
Probab=21.69 E-value=1.6e+02 Score=20.22 Aligned_cols=42 Identities=21% Similarity=0.229 Sum_probs=25.7
Q ss_pred ceeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHH----HHHHHHhC
Q psy15201 8 KSAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKL----GAFLKQAG 49 (97)
Q Consensus 8 ~~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l----~~~l~~~~ 49 (97)
||--|||..++.+.+.--.+.|+.++...-.+++ .+-.+|.+
T Consensus 98 katELGv~~I~p~~t~rsv~~~~~~k~~~k~~Rw~~I~~eAaeQs~ 143 (251)
T 4e8b_A 98 KSIELGVSLITPLFSERCGVKLDSERLNKKLQQWQKIAIAACEQCG 143 (251)
T ss_dssp HHHHTTCCEEEEEECTTCCCCCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhCCCEEEEEEeeeEEeecchhhhhhHHHHHHHHHHHHHHhcC
Confidence 4556999999999877665666655443333333 33445544
Done!