RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15201
(97 letters)
>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 239
Score = 68.9 bits (168), Expect = 2e-16
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 15/90 (16%)
Query: 13 GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72
GV QL V +NK+D+V W + RFQEIV + F+K+ G+ + +VP SG G+N+ +
Sbjct: 143 GVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEAT 202
Query: 73 QVPALTSWY------------SGPCLLDVI 90
WY G LL+ I
Sbjct: 203 ---TNAPWYKGWEKETKAGVVKGKTLLEAI 229
>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit
cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae
pv. tomato [TaxId: 323]}
Length = 222
Score = 64.5 bits (156), Expect = 8e-15
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 13 GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72
G+ + V INK+D + + F+ I F + F+ + + +VP S L G+N+ S
Sbjct: 141 GIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKS 200
Query: 73 QVPALTSWYSGPCLLDVI 90
+ WY+G L++++
Sbjct: 201 ---ERSPWYAGQSLMEIL 215
>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal
(G) domain {Archaeon Sulfolobus solfataricus [TaxId:
2287]}
Length = 224
Score = 64.1 bits (155), Expect = 1e-14
Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 5/80 (6%)
Query: 13 GVNQLGVVINKLDTVS--WSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70
G++QL V +NK+D + + R++EIV ++ F++ GF + + +VP +G+N+T
Sbjct: 140 GLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH 199
Query: 71 PSQVPALTSWYSGPCLLDVI 90
S WY+GP L + +
Sbjct: 200 KS---ENMKWYNGPTLEEYL 216
>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release
factor ERF2, G domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 245
Score = 63.7 bits (154), Expect = 2e-14
Identities = 33/82 (40%), Positives = 51/82 (62%), Gaps = 5/82 (6%)
Query: 13 GVNQLGVVINKLDTVS--WSQDRFQEIVTKLGAFLKQAGFRDS--DIEYVPCSGLTGENL 68
G+N L VVINK+D S WS++R++E V KL FL++ +S D++Y+P S TG+N+
Sbjct: 161 GINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNV 220
Query: 69 TTPSQVPALTSWYSGPCLLDVI 90
++ WY GP LL+ +
Sbjct: 221 KDRVD-SSVCPWYQGPSLLEYL 241
>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu),
N-terminal (G) domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 196
Score = 55.8 bits (134), Expect = 1e-11
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 6/77 (7%)
Query: 14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQ 73
V + V +NK D V S + + + ++ L + G++ + + S L P
Sbjct: 119 VEHVVVYVNKADAVQDS-EMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPE- 176
Query: 74 VPALTSWYSGPCLLDVI 90
S LLD +
Sbjct: 177 ----LGLKSVQKLLDAV 189
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 204
Score = 44.2 bits (104), Expect = 2e-07
Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 10/84 (11%)
Query: 13 GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72
GV + V +NK+D V + + ++ L Q F ++ + S L +
Sbjct: 119 GVPYIVVFMNKVDMVD-DPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRN 177
Query: 73 QVPALTSWYSGPC------LLDVI 90
T LLD I
Sbjct: 178 ---PKTRRGENEWVDKIWELLDAI 198
>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Sulfolobus solfataricus [TaxId:
2287]}
Length = 205
Score = 37.2 bits (85), Expect = 7e-05
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 13 GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENL 68
GV L +V NK+D VS + ++ F K G ++ +P S L N+
Sbjct: 139 GVKNLIIVQNKVDVVSK--EEALSQYRQIKQFTK--GTWAENVPIIPVSALHKINI 190
>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Archaeon Pyrococcus abyssi
[TaxId: 29292]}
Length = 195
Score = 31.9 bits (71), Expect = 0.007
Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 19 VVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENL 68
+ NK++ V ++ E ++ F++ G + +P S L G N+
Sbjct: 137 IAQNKIELVDK--EKALENYRQIKEFIE--GTVAENAPIIPISALHGANI 182
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 31.6 bits (70), Expect = 0.009
Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 29/79 (36%)
Query: 19 VVINKLDTVSWS-------------------QDRFQEIVTKLGAFLKQAGFRD------- 52
V NK+D + Q + V +L L + GF
Sbjct: 127 VAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVT 186
Query: 53 ---SDIEYVPCSGLTGENL 68
S + +P S +TGE +
Sbjct: 187 DFASQVSIIPISAITGEGI 205
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 30.1 bits (66), Expect = 0.024
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 5/49 (10%)
Query: 20 VINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENL 68
+NKLD + Q+ + K + D ++P S G+N+
Sbjct: 127 AVNKLDKIKNVQEVINFLAEKFEV-----PLSEIDKVFIPISAKFGDNI 170
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 30.0 bits (66), Expect = 0.027
Identities = 12/48 (25%), Positives = 17/48 (35%)
Query: 21 INKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENL 68
L + + V ++ FLK +D C LTGE L
Sbjct: 117 AGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGL 164
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 28.5 bits (62), Expect = 0.080
Identities = 6/40 (15%), Positives = 11/40 (27%)
Query: 29 WSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENL 68
S+ + + L Q +E CS +
Sbjct: 117 VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGY 156
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 28.0 bits (61), Expect = 0.13
Identities = 9/69 (13%), Positives = 17/69 (24%), Gaps = 19/69 (27%)
Query: 19 VVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRD-------------------SDIEYVP 59
+NK+D +S + + +L D + +
Sbjct: 162 PALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLY 221
Query: 60 CSGLTGENL 68
S T E
Sbjct: 222 LSAKTREGF 230
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 28.0 bits (61), Expect = 0.14
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 6/50 (12%)
Query: 19 VVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENL 68
+ NK D ++ + EI L RD + CS LTGE +
Sbjct: 122 IFANKQDLLTAAPAS--EIAEGLN----LHTIRDRVWQIQSCSALTGEGV 165
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 27.7 bits (60), Expect = 0.19
Identities = 5/34 (14%), Positives = 8/34 (23%)
Query: 35 QEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENL 68
T + +E CS L +
Sbjct: 141 LYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGY 174
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 27.3 bits (59), Expect = 0.21
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 38 VTKLGAFLKQAGFRDSDIEYVPCSGLTGENL 68
+ L+ R CS +TGE+L
Sbjct: 121 CNAIQEALELDSIRSHHWRIQGCSAVTGEDL 151
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 27.3 bits (59), Expect = 0.23
Identities = 4/24 (16%), Positives = 10/24 (41%)
Query: 45 LKQAGFRDSDIEYVPCSGLTGENL 68
+ + +D +I S +N+
Sbjct: 129 MNLSAIQDREICCYSISCKEKDNI 152
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 27.0 bits (58), Expect = 0.34
Identities = 5/40 (12%), Positives = 13/40 (32%)
Query: 29 WSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENL 68
+ + + + Q+ + +P S TG +
Sbjct: 123 NAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGV 162
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 26.6 bits (57), Expect = 0.41
Identities = 5/24 (20%), Positives = 7/24 (29%)
Query: 45 LKQAGFRDSDIEYVPCSGLTGENL 68
L +D + S G L
Sbjct: 131 LGLPALKDRKWQIFKTSATKGTGL 154
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 25.9 bits (57), Expect = 0.51
Identities = 7/51 (13%), Positives = 17/51 (33%), Gaps = 11/51 (21%)
Query: 9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVP 59
++GV V I + ++ I + D+ ++ +P
Sbjct: 68 GDIAGVAD--VTIRQ---------SYRLIYPRAPDLFPTDFKFDTPVDKLP 107
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 26.1 bits (56), Expect = 0.63
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 44 FLKQAGFRDSDIEYVPCSGLTGENL 68
L RD + P +G+ L
Sbjct: 137 KLGLTRIRDRNWYVQPSCATSGDGL 161
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 26.0 bits (56), Expect = 0.64
Identities = 8/50 (16%), Positives = 17/50 (34%), Gaps = 9/50 (18%)
Query: 19 VVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENL 68
+V NK+D S + E +A + ++ S + +
Sbjct: 113 LVGNKVDLESEREVSSSEG---------RALAEEWGCPFMETSAKSKTMV 153
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 26.2 bits (56), Expect = 0.69
Identities = 4/40 (10%), Positives = 9/40 (22%)
Query: 29 WSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENL 68
++ L R + +G+ L
Sbjct: 110 KQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGL 149
>d1gyxa_ d.80.1.1 (A:) 4-oxalocrotonate tautomerase homologue YdcE
{Escherichia coli [TaxId: 562]}
Length = 76
Score = 24.7 bits (54), Expect = 1.0
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 19 VVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFR 51
+ + ++ SW EI ++ A +K+ G+
Sbjct: 41 IALQQIQPESWQAIWDAEIAPQMEALIKKPGYS 73
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 25.7 bits (55), Expect = 1.0
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 47 QAGFRDSDIEYVPCSGLTGENL 68
+D V S + GE +
Sbjct: 145 LVELKDRSWSIVASSAIKGEGI 166
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 25.0 bits (53), Expect = 1.9
Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 4/54 (7%)
Query: 19 VVINKLDTVSWSQDRFQEIVTKLGAFLKQAGF----RDSDIEYVPCSGLTGENL 68
+V NK D + R + K + G R Y+ CS T + +
Sbjct: 111 LVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGV 164
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 24.5 bits (52), Expect = 2.2
Identities = 9/50 (18%), Positives = 21/50 (42%), Gaps = 9/50 (18%)
Query: 19 VVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENL 68
++ NK D + ++E + ++ + ++ S TGEN+
Sbjct: 114 LIGNKADLEAQRDVTYEEA---------KQFAEENGLLFLEASAKTGENV 154
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 24.3 bits (51), Expect = 2.6
Identities = 8/44 (18%), Positives = 13/44 (29%), Gaps = 4/44 (9%)
Query: 25 DTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENL 68
D V + R+ E L + + S G N+
Sbjct: 131 DLVVHREKRYDEFTKLFREKLYFIDY----SPLIFTSADKGWNI 170
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 24.4 bits (52), Expect = 2.8
Identities = 8/50 (16%), Positives = 15/50 (30%), Gaps = 9/50 (18%)
Query: 19 VVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENL 68
+V NK D E +++ ++ S L N+
Sbjct: 114 LVGNKSDLRHLRAVPTDEARAF---------AEKNNLSFIETSALDSTNV 154
>d1usub_ d.83.2.1 (B:) Activator of Hsp90 ATPase, Aha1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 142
Score = 24.0 bits (52), Expect = 3.5
Identities = 6/46 (13%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 21 INKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGE 66
++K + + W+++ F++ + + A + + S + G+
Sbjct: 1 VDK-NCIGWAKEYFKQKIVGVEAGSVKDKKY---AKIKSVSSIEGD 42
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 23.8 bits (50), Expect = 3.6
Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 4/54 (7%)
Query: 19 VVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDS----DIEYVPCSGLTGENL 68
+V KLD + KL G + ++Y+ CS LT L
Sbjct: 114 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGL 167
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 23.7 bits (50), Expect = 4.1
Identities = 3/18 (16%), Positives = 8/18 (44%)
Query: 51 RDSDIEYVPCSGLTGENL 68
R + ++ S T + +
Sbjct: 140 RKHSMLFIEASAKTCDGV 157
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 23.6 bits (50), Expect = 4.1
Identities = 4/22 (18%), Positives = 11/22 (50%)
Query: 47 QAGFRDSDIEYVPCSGLTGENL 68
+A ++ I ++ S +N+
Sbjct: 130 EALAKELGIPFIESSAKNDDNV 151
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 23.7 bits (50), Expect = 5.0
Identities = 6/18 (33%), Positives = 14/18 (77%)
Query: 51 RDSDIEYVPCSGLTGENL 68
+++++ ++ S LTGEN+
Sbjct: 138 QENELMFLETSALTGENV 155
>d1gvza_ b.47.1.2 (A:) Prostate specific antigen (PSA kallikrein)
{Horse (Equus caballus) [TaxId: 9796]}
Length = 237
Score = 23.5 bits (49), Expect = 5.6
Identities = 8/27 (29%), Positives = 10/27 (37%)
Query: 59 PCSGLTGENLTTPSQVPALTSWYSGPC 85
C G +G L +TSW C
Sbjct: 184 ICLGDSGGALICDGVFQGITSWGYSEC 210
>d2a2ma1 a.132.1.3 (A:10-240) Hypothetical protein BT3146
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 231
Score = 23.4 bits (50), Expect = 5.6
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 58 VPCSGLTGENLTTPSQVPALTSWYS 82
+P S LTG T S VPA S +
Sbjct: 7 IPASRLTGRLTTLKSDVPAADSLFW 31
>d1jaea2 c.1.8.1 (A:1-378) Animal alpha-amylase {Yellow mealworm
(Tenebrio molitor), larva [TaxId: 7067]}
Length = 378
Score = 23.7 bits (50), Expect = 5.8
Identities = 6/23 (26%), Positives = 11/23 (47%), Gaps = 3/23 (13%)
Query: 28 SWSQDRFQEIVTKLGAFLKQAGF 50
W ++ +I + FL+ GF
Sbjct: 18 EW---KWNDIADECERFLQPQGF 37
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 22.8 bits (48), Expect = 8.9
Identities = 4/15 (26%), Positives = 8/15 (53%)
Query: 54 DIEYVPCSGLTGENL 68
D+ Y+ S +N+
Sbjct: 141 DMYYLETSAKESDNV 155
>d1g94a2 c.1.8.1 (A:1-354) Bacterial alpha-amylase
{Pseudoalteromonas haloplanktis (Alteromonas
haloplanktis) [TaxId: 228]}
Length = 354
Score = 22.9 bits (48), Expect = 9.4
Identities = 6/56 (10%), Positives = 19/56 (33%), Gaps = 16/56 (28%)
Query: 28 SWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSG 83
W +Q++ + +L G+ ++ P++ + W++
Sbjct: 10 EW---NWQDVAQECEQYLGPKGY-------------AAVQVSPPNEHITGSQWWTR 49
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.136 0.417
Gapped
Lambda K H
0.267 0.0406 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 357,562
Number of extensions: 13905
Number of successful extensions: 107
Number of sequences better than 10.0: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 41
Length of query: 97
Length of database: 2,407,596
Length adjustment: 59
Effective length of query: 38
Effective length of database: 1,597,526
Effective search space: 60705988
Effective search space used: 60705988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)