BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15204
(232 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3J2K|7 Chain 7, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated
Termination Complex
Length = 439
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%)
Query: 138 MHQQSLAESAVITRLLSQVHKTSGEVIRKKPRALTKSMSAQVVIETVRPMCVELYRDVKE 197
+H + E IT L+S V K SGE + +PR + + + T +C+E ++D +
Sbjct: 357 LHIHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQ 416
Query: 198 LGRFMLRVSGVTIAAGLITKVI 219
+GRF LR G TIA G + K++
Sbjct: 417 MGRFTLRDEGKTIAIGKVLKLV 438
>pdb|3E20|A Chain A, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|D Chain D, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|E Chain E, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|J Chain J, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
Length = 201
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 138 MHQQSLAESAVITRLLSQVHKTSGEVIRKKPRALTKSMSAQVVIETVRPMCVELYRDVKE 197
MH + E +LL ++ KT+ + +K P TK M +ET P+C+E + D +
Sbjct: 120 MHIHTAVEEVSFAKLLHKLDKTNRKS-KKPPMFATKGMKIIAELETQTPVCMERFEDYQY 178
Query: 198 LGRFMLRVSGVTIAAGLITKVI 219
+GRF LR G T+A G + K++
Sbjct: 179 MGRFTLRDQGTTVAVGKVVKIL 200
>pdb|1R5B|A Chain A, Crystal Structure Analysis Of Sup35
pdb|1R5N|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gdp
pdb|1R5O|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gmppnp
Length = 467
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 138 MHQQSLAESAVITRLLSQVHKTSGEVIRKKPRALTKSMSAQVVIETVRPMCVELYRDVKE 197
MH + E +LL ++ KT+ + +K P TK M +ET P+C+E + D +
Sbjct: 386 MHIHTAVEEVSFAKLLHKLDKTNRKS-KKPPMFATKGMKIIAELETQTPVCMERFEDYQY 444
Query: 198 LGRFMLRVSGVTIAAGLITKVI 219
+GRF LR G T+A G + K++
Sbjct: 445 MGRFTLRDQGTTVAVGKVVKIL 466
>pdb|3E1Y|E Chain E, Crystal Structure Of Human Erf1ERF3 COMPLEX
pdb|3E1Y|F Chain F, Crystal Structure Of Human Erf1ERF3 COMPLEX
pdb|3E1Y|G Chain G, Crystal Structure Of Human Erf1ERF3 COMPLEX
pdb|3E1Y|H Chain H, Crystal Structure Of Human Erf1ERF3 COMPLEX
Length = 204
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%)
Query: 138 MHQQSLAESAVITRLLSQVHKTSGEVIRKKPRALTKSMSAQVVIETVRPMCVELYRDVKE 197
+H + E IT L+ V K SGE + +PR + + + T +C+E ++D +
Sbjct: 119 LHIHTCIEEVEITALICLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQ 178
Query: 198 LGRFMLRVSGVTIAAGLITKVI 219
+GRF LR G TIA G + K++
Sbjct: 179 MGRFTLRDEGKTIAIGKVLKLV 200
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1SKQ|A Chain A, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
pdb|1SKQ|B Chain B, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
Length = 435
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%)
Query: 138 MHQQSLAESAVITRLLSQVHKTSGEVIRKKPRALTKSMSAQVVIETVRPMCVELYRDVKE 197
+H + + + ++ L+S++ +G+ K P+ L + A V + ++P+CVE Y +
Sbjct: 347 LHVHTASVACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLCVEKYNEFPP 406
Query: 198 LGRFMLRVSGVTIAAGLITKV 218
LGRF +R G T+ G+I V
Sbjct: 407 LGRFAMRDMGKTVGVGIIVDV 427
>pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|C Chain C, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|E Chain E, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|G Chain G, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
Length = 437
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 47/81 (58%)
Query: 138 MHQQSLAESAVITRLLSQVHKTSGEVIRKKPRALTKSMSAQVVIETVRPMCVELYRDVKE 197
+H + + S+ I + +++ +G+V+ + P+ L +A V + V+P+ VE + ++ +
Sbjct: 347 IHVHTASVSSRIIEIKAKLDPKTGQVVEQNPQFLKAGDAAIVRFKPVKPLVVEKFSEIPQ 406
Query: 198 LGRFMLRVSGVTIAAGLITKV 218
LGRF +R T+ G++T V
Sbjct: 407 LGRFAMRDMNRTVGIGIVTDV 427
>pdb|3VMF|A Chain A, Archaeal Protein
Length = 440
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 47/81 (58%)
Query: 138 MHQQSLAESAVITRLLSQVHKTSGEVIRKKPRALTKSMSAQVVIETVRPMCVELYRDVKE 197
+H + + S+ I + +++ +G+V+ + P+ L +A V + V+P+ VE + ++ +
Sbjct: 350 IHVHTASVSSRIIEIKAKLDPKTGQVVEQNPQFLKAGDAAIVRFKPVKPLVVEKFSEIPQ 409
Query: 198 LGRFMLRVSGVTIAAGLITKV 218
LGRF +R T+ G++T V
Sbjct: 410 LGRFAMRDMNRTVGIGIVTDV 430
>pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex
Eef1a:eef1ba
pdb|1G7C|A Chain A, Yeast Eef1a:eef1ba In Complex With Gdpnp
pdb|1IJE|A Chain A, Nucleotide Exchange Intermediates In The Eef1a-eef1ba
Complex
pdb|1IJF|A Chain A, Nucleotide Exchange Mechanisms In The Eef1a-Eef1ba Complex
pdb|2B7B|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a And Gdp
pdb|2B7C|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a
Length = 458
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%)
Query: 151 RLLSQVHKTSGEVIRKKPRALTKSMSAQVVIETVRPMCVELYRDVKELGRFMLRVSGVTI 210
LL + + SG+ + P+ L +A V +PMCVE + + LGRF +R T+
Sbjct: 372 ELLEKNDRRSGKKLEDHPKFLKSGDAALVKFVPSKPMCVEAFSEYPPLGRFAVRDMRQTV 431
Query: 211 AAGLITKV 218
A G+I V
Sbjct: 432 AVGVIKSV 439
>pdb|3MCA|A Chain A, Structure Of The Dom34-Hbs1 Complex And Implications For
Its Role In No-Go Decay
Length = 592
Score = 35.0 bits (79), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 9/96 (9%)
Query: 130 FIKELKV-GMHQQSLAESAVITRLLSQVHKTSGEVI---RKKPRALTKSMSAQVVI---E 182
F+ E++ +H L+ S ++ L V S +++ K+ R + A V I +
Sbjct: 498 FVAEIQTFDIHGPILSGSTLVLHLGRTVTSVSLKIVTVNNKRSRHIASRKRALVRISFLD 557
Query: 183 TVRPMCVELYRDVKELGRFMLRVSGVTIAAGLITKV 218
+ P+C L + LGRF+LR SG T+AAG++ ++
Sbjct: 558 GLFPLC--LAEECPALGRFILRRSGDTVAAGIVKEL 591
>pdb|3IZQ|1 Chain 1, Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To A
Translating Ribosome
Length = 611
Score = 34.3 bits (77), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 12/90 (13%)
Query: 134 LKVGMHQQSLAESAVITRLLSQVHKTSGEVIRKKPRALTKSMSAQVVIETVR-----PMC 188
L +G+ +Q A I RL+S + K +KK R L A V IE + P+
Sbjct: 527 LFIGVKEQP----ARIKRLISFIDK-GNTASKKKIRHLGSKQRAFVEIELIEVKRWIPLL 581
Query: 189 VELYRDVKELGRFMLRVSGVTIAAGLITKV 218
D LGR +LR G TIAAG I+++
Sbjct: 582 TAHEND--RLGRVVLRKDGRTIAAGKISEI 609
>pdb|3P27|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
pdb|3P27|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
Length = 483
Score = 33.9 bits (76), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 12/90 (13%)
Query: 134 LKVGMHQQSLAESAVITRLLSQVHKTSGEVIRKKPRALTKSMSAQVVIETVR-----PMC 188
L +G+ +Q A I RL+S + K +KK R L A V IE + P+
Sbjct: 393 LFIGVKEQP----ARIKRLISFIDK-GNTASKKKIRHLGSKQRAFVEIELIEVKRWIPLL 447
Query: 189 VELYRDVKELGRFMLRVSGVTIAAGLITKV 218
D LGR +LR G TIAAG I+++
Sbjct: 448 TAHEND--RLGRVVLRKDGRTIAAGKISEI 475
>pdb|3P26|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
pdb|3P26|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
Length = 483
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 12/90 (13%)
Query: 134 LKVGMHQQSLAESAVITRLLSQVHKTSGEVIRKKPRALTKSMSAQVVIETVR-----PMC 188
L +G+ +Q A I RL+S + K +KK R L A V IE + P+
Sbjct: 393 LFIGVKEQP----ARIKRLISFIDK-GNTASKKKIRHLGSKQRAFVEIELIEVKRWIPLL 447
Query: 189 VELYRDVKELGRFMLRVSGVTIAAGLITKV 218
D LGR +LR G TIAAG I+++
Sbjct: 448 TAHEND--RLGRVVLRKDGRTIAAGKISEI 475
>pdb|3FF6|A Chain A, Human Acc2 Ct Domain With Cp-640186
pdb|3FF6|B Chain B, Human Acc2 Ct Domain With Cp-640186
pdb|3FF6|C Chain C, Human Acc2 Ct Domain With Cp-640186
pdb|3FF6|D Chain D, Human Acc2 Ct Domain With Cp-640186
Length = 760
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 129 GFIKELKVGMHQQSLAESAVITRLLSQVHKTSGEVIRKKPRALTKSMSAQVVIETVRPMC 188
GF +K M+ Q L A I L Q + +I P A + S V+ T+ P+C
Sbjct: 468 GFSGGMK-DMYDQVLKFGAYIVDGLRQYKQPI--LIYIPPYAELRGGSWVVIDATINPLC 524
Query: 189 VELYRDVKELG 199
+E+Y D + G
Sbjct: 525 IEMYADKESRG 535
>pdb|3TDC|A Chain A, Crystal Structure Of Human Acetyl-Coa Carboxylase 2
Length = 762
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 129 GFIKELKVGMHQQSLAESAVITRLLSQVHKTSGEVIRKKPRALTKSMSAQVVIETVRPMC 188
GF +K M+ Q L A I L Q + +I P A + S V+ T+ P+C
Sbjct: 470 GFSGGMK-DMYDQVLKFGAYIVDGLRQYKQPI--LIYIPPYAELRGGSWVVIDATINPLC 526
Query: 189 VELYRDVKELG 199
+E+Y D + G
Sbjct: 527 IEMYADKESRG 537
>pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 405
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 6/39 (15%)
Query: 181 IETVRPMCVELYRDVKELGRFMLRVSGVTIAAGLITKVI 219
+E ++P+ +E E RF +R G T+ AG++TK++
Sbjct: 372 VELIKPVALE------EGLRFAIREGGRTVGAGVVTKIL 404
>pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From
Thermus Aquaticus In The Gtp Conformation
Length = 405
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 6/39 (15%)
Query: 181 IETVRPMCVELYRDVKELGRFMLRVSGVTIAAGLITKVI 219
+E ++P+ +E E RF +R G T+ AG++TK++
Sbjct: 372 VELIKPVALE------EGLRFAIREGGRTVGAGVVTKIL 404
>pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Ge2270 A
Length = 405
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 6/39 (15%)
Query: 181 IETVRPMCVELYRDVKELGRFMLRVSGVTIAAGLITKVI 219
+E ++P+ +E E RF +R G T+ AG++TK++
Sbjct: 372 VELIKPVALE------EGLRFAIREGGRTVGAGVVTKIL 404
>pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Pulvomycin
Length = 405
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 6/39 (15%)
Query: 181 IETVRPMCVELYRDVKELGRFMLRVSGVTIAAGLITKVI 219
+E ++P+ +E E RF +R G T+ AG++TK++
Sbjct: 372 VELIKPVALE------EGLRFAIREGGRTVGAGVVTKIL 404
>pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|B Chain B, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|C Chain C, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TUI|A Chain A, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|B Chain B, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|C Chain C, Intact Elongation Factor Tu In Complex With Gdp
pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus Elongation Factor
Ef-Tu:gtp Ternary Complex
pdb|1ZC8|Y Chain Y, Coordinates Of Tmrna, Smpb, Ef-tu And H44 Fitted Into
Cryo- Em Map Of The 70s Ribosome And Tmrna Complex
pdb|1OB5|A Chain A, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|C Chain C, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|E Chain E, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
Length = 405
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 6/39 (15%)
Query: 181 IETVRPMCVELYRDVKELGRFMLRVSGVTIAAGLITKVI 219
+E ++P+ +E E RF +R G T+ AG++TK++
Sbjct: 372 VELIKPVALE------EGLRFAIREGGRTVGAGVVTKIL 404
>pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0W|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
Length = 405
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 6/39 (15%)
Query: 181 IETVRPMCVELYRDVKELGRFMLRVSGVTIAAGLITKVI 219
+E ++P+ +E E RF +R G T+ AG++TK++
Sbjct: 372 VELIKPVALE------EGLRFAIREGGRTVGAGVVTKIL 404
>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation
Factor Tu (Ef-Tu) In Complex With The Gtp Analogue
Gppnhp.
pdb|1HA3|A Chain A, Elongation Factor Tu In Complex With Aurodox
pdb|1HA3|B Chain B, Elongation Factor Tu In Complex With Aurodox
pdb|3FIC|Z Chain Z, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 30s Subunit
And The Ligands
pdb|2XQD|Z Chain Z, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
Length = 405
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 6/39 (15%)
Query: 181 IETVRPMCVELYRDVKELGRFMLRVSGVTIAAGLITKVI 219
+E ++P+ +E E RF +R G T+ AG++TK++
Sbjct: 372 VELIKPVALE------EGLRFAIREGGRTVGAGVVTKIL 404
>pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|B Chain B, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|F Chain F, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 405
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 6/39 (15%)
Query: 181 IETVRPMCVELYRDVKELGRFMLRVSGVTIAAGLITKVI 219
+E ++P+ +E E RF +R G T+ AG++TK++
Sbjct: 372 VELIKPVALE------EGLRFAIREGGRTVGAGVVTKIL 404
>pdb|2Y0Y|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y10|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y12|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y14|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y16|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y18|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome
Length = 405
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 6/39 (15%)
Query: 181 IETVRPMCVELYRDVKELGRFMLRVSGVTIAAGLITKVI 219
+E ++P+ +E E RF +R G T+ AG++TK++
Sbjct: 372 VELIKPVALE------EGLRFAIREGGRTVGAGVVTKIL 404
>pdb|2WRN|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 1 Of 4).
pdb|2WRQ|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 3 Of 4)
Length = 406
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 6/39 (15%)
Query: 181 IETVRPMCVELYRDVKELGRFMLRVSGVTIAAGLITKVI 219
+E ++P+ +E E RF +R G T+ AG++TK++
Sbjct: 373 VELIKPVALE------EGLRFAIREGGRTVGAGVVTKIL 405
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,086,244
Number of Sequences: 62578
Number of extensions: 149500
Number of successful extensions: 273
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 264
Number of HSP's gapped (non-prelim): 24
length of query: 232
length of database: 14,973,337
effective HSP length: 96
effective length of query: 136
effective length of database: 8,965,849
effective search space: 1219355464
effective search space used: 1219355464
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)