Query psy15204
Match_columns 232
No_of_seqs 128 out of 1418
Neff 4.9
Searched_HMMs 46136
Date Fri Aug 16 23:20:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15204.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15204hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5256 TEF1 Translation elong 100.0 5.4E-34 1.2E-38 268.4 13.0 174 16-219 252-427 (428)
2 PLN00043 elongation factor 1-a 100.0 1.2E-31 2.6E-36 255.4 18.5 177 16-222 254-433 (447)
3 TIGR00483 EF-1_alpha translati 100.0 5.8E-30 1.3E-34 240.5 17.7 173 18-220 250-424 (426)
4 PRK12317 elongation factor 1-a 100.0 6E-30 1.3E-34 240.0 17.5 174 18-221 248-423 (425)
5 PTZ00141 elongation factor 1- 100.0 1.8E-29 4E-34 240.3 17.9 180 17-226 255-436 (446)
6 cd03704 eRF3c_III This family 100.0 1.3E-27 2.8E-32 186.2 12.9 104 113-218 4-108 (108)
7 cd04093 HBS1_C HBS1_C: this fa 99.9 5.4E-27 1.2E-31 181.7 14.4 104 113-218 4-107 (107)
8 cd03705 EF1_alpha_III Domain I 99.9 5.9E-27 1.3E-31 180.6 11.9 101 113-215 4-104 (104)
9 PRK05506 bifunctional sulfate 99.9 2.8E-26 6E-31 225.8 17.0 169 17-220 263-435 (632)
10 PRK05124 cysN sulfate adenylyl 99.9 3.4E-26 7.4E-31 219.3 16.5 168 17-219 267-438 (474)
11 TIGR02034 CysN sulfate adenyly 99.9 2.8E-26 6E-31 215.4 15.4 164 17-215 239-406 (406)
12 KOG0052|consensus 99.9 5.1E-27 1.1E-31 219.9 8.3 182 17-228 197-381 (391)
13 cd04095 CysN_NoDQ_III TCysN_No 99.9 2.3E-24 4.9E-29 166.7 12.6 98 113-215 4-103 (103)
14 KOG0459|consensus 99.9 3.2E-24 6.9E-29 202.4 12.6 171 17-219 327-500 (501)
15 cd01513 Translation_factor_III 99.9 1E-22 2.2E-27 154.9 12.5 99 113-215 4-102 (102)
16 PLN03126 Elongation factor Tu; 99.9 2.8E-22 6E-27 193.0 15.6 160 17-219 311-477 (478)
17 PRK00049 elongation factor Tu; 99.9 3.7E-22 8E-27 187.0 15.7 154 18-219 235-395 (396)
18 CHL00071 tufA elongation facto 99.9 7.2E-22 1.6E-26 185.6 15.6 160 18-220 243-409 (409)
19 PF03143 GTP_EFTU_D3: Elongati 99.9 5.4E-22 1.2E-26 153.5 11.4 93 114-219 7-99 (99)
20 PLN03127 Elongation factor Tu; 99.9 9.6E-22 2.1E-26 187.7 15.2 154 18-219 284-446 (447)
21 PRK12735 elongation factor Tu; 99.9 1.3E-21 2.8E-26 183.3 15.3 154 18-219 235-395 (396)
22 PRK12736 elongation factor Tu; 99.9 2.3E-21 4.9E-26 181.5 15.9 154 18-219 233-393 (394)
23 TIGR00485 EF-Tu translation el 99.9 6.4E-21 1.4E-25 178.1 15.7 154 18-219 233-393 (394)
24 COG0050 TufB GTPases - transla 99.9 3.3E-21 7.2E-26 176.8 12.7 155 17-219 232-393 (394)
25 COG2895 CysN GTPases - Sulfate 99.9 5E-21 1.1E-25 178.7 13.3 170 18-222 246-419 (431)
26 KOG0460|consensus 99.8 2.1E-21 4.6E-26 180.7 7.8 156 17-220 276-438 (449)
27 KOG0458|consensus 99.7 2.1E-18 4.5E-23 168.3 8.5 174 17-219 427-602 (603)
28 cd03708 GTPBP_III Domain III o 99.7 2.1E-17 4.6E-22 123.6 10.7 82 114-218 5-87 (87)
29 cd03706 mtEFTU_III Domain III 99.7 5.2E-16 1.1E-20 118.1 12.2 86 114-218 5-93 (93)
30 cd03707 EFTU_III Domain III of 99.7 9.1E-16 2E-20 115.7 11.3 83 114-215 5-90 (90)
31 PRK04000 translation initiatio 99.6 5.6E-15 1.2E-19 139.5 13.0 146 16-216 239-411 (411)
32 PTZ00327 eukaryotic translatio 99.6 3.6E-14 7.8E-19 136.6 13.4 149 17-217 272-451 (460)
33 TIGR03680 eif2g_arch translati 99.5 5.4E-14 1.2E-18 132.4 12.8 145 18-215 236-405 (406)
34 cd04094 selB_III This family r 99.5 4.6E-13 9.9E-18 102.9 10.3 95 96-215 1-97 (97)
35 COG5258 GTPBP1 GTPase [General 99.4 1.6E-13 3.5E-18 130.1 7.8 149 18-218 371-526 (527)
36 PRK10512 selenocysteinyl-tRNA- 99.4 8.4E-13 1.8E-17 130.9 12.8 141 18-220 197-342 (614)
37 TIGR00475 selB selenocysteine- 99.3 3.6E-11 7.9E-16 118.5 12.2 137 18-218 199-338 (581)
38 KOG0463|consensus 98.6 9.7E-08 2.1E-12 91.3 8.3 109 89-223 442-551 (641)
39 KOG1143|consensus 98.3 2.5E-06 5.4E-11 81.8 7.6 106 92-222 480-586 (591)
40 cd03697 EFTU_II EFTU_II: Elong 98.0 1.8E-06 3.8E-11 65.1 1.4 48 17-64 22-73 (87)
41 cd03693 EF1_alpha_II EF1_alpha 98.0 3.9E-06 8.5E-11 63.8 2.0 49 15-63 24-74 (91)
42 cd04089 eRF3_II eRF3_II: domai 97.9 6.6E-06 1.4E-10 61.4 2.7 51 14-64 18-70 (82)
43 cd03698 eRF3_II_like eRF3_II_l 97.9 7.3E-06 1.6E-10 61.2 2.8 52 13-64 18-71 (83)
44 COG3276 SelB Selenocysteine-sp 97.7 0.00011 2.5E-09 71.0 8.2 104 20-153 196-301 (447)
45 cd03696 selB_II selB_II: this 97.7 2.3E-05 5.1E-10 58.2 2.3 52 13-64 18-71 (83)
46 cd03695 CysN_NodQ_II CysN_NodQ 97.7 3.1E-05 6.7E-10 57.9 2.6 49 13-61 18-68 (81)
47 cd03694 GTPBP_II Domain II of 97.4 9.6E-05 2.1E-09 55.8 2.2 49 16-64 21-75 (87)
48 cd03692 mtIF2_IVc mtIF2_IVc: t 93.2 0.072 1.6E-06 39.9 2.5 47 17-63 22-73 (84)
49 PF09173 eIF2_C: Initiation fa 93.1 0.78 1.7E-05 35.6 8.1 61 127-215 24-88 (88)
50 cd03688 eIF2_gamma_II eIF2_gam 92.2 0.17 3.7E-06 41.0 3.5 65 17-103 35-113 (113)
51 COG5257 GCD11 Translation init 90.5 5.6 0.00012 38.3 12.2 149 16-217 240-413 (415)
52 PF03144 GTP_EFTU_D2: Elongati 79.5 0.81 1.8E-05 32.4 0.7 46 18-63 9-61 (74)
53 cd01342 Translation_Factor_II_ 71.1 3.9 8.5E-05 27.7 2.4 50 13-62 18-71 (83)
54 COG4043 Preprotein translocase 68.6 2.3 5.1E-05 34.1 0.9 27 21-47 33-59 (111)
55 KOG0461|consensus 58.4 19 0.00042 35.2 5.2 141 18-193 225-380 (522)
56 cd06555 ASCH_PF0470_like ASC-1 50.0 11 0.00023 30.3 1.7 43 21-63 31-81 (109)
57 PF11302 DUF3104: Protein of u 47.4 12 0.00026 28.4 1.5 16 19-34 3-18 (75)
58 TIGR01730 RND_mfp RND family e 44.3 91 0.002 27.4 7.0 96 82-185 145-248 (322)
59 PF15182 OTOS: Otospiralin 42.7 8.1 0.00018 28.6 -0.0 21 42-62 44-66 (69)
60 TIGR00999 8a0102 Membrane Fusi 41.8 1.1E+02 0.0025 26.2 7.1 100 76-184 94-199 (265)
61 PRK03598 putative efflux pump 40.0 1.7E+02 0.0036 26.6 8.1 32 126-157 250-284 (331)
62 TIGR01393 lepA GTP-binding pro 39.7 38 0.00083 34.2 4.2 46 18-63 212-261 (595)
63 PRK10559 p-hydroxybenzoic acid 35.1 2.4E+02 0.0053 25.7 8.4 84 127-215 202-296 (310)
64 PRK04004 translation initiatio 33.2 38 0.00082 34.2 3.0 47 18-64 255-304 (586)
65 PRK05433 GTP-binding protein L 29.7 40 0.00086 34.1 2.5 45 19-63 217-265 (600)
66 COG1471 RPS4A Ribosomal protei 25.8 3.3E+02 0.0071 25.0 7.3 57 169-229 151-208 (241)
67 TIGR00170 leuC 3-isopropylmala 24.7 31 0.00066 34.2 0.7 45 19-63 115-173 (465)
68 PLN00036 40S ribosomal protein 23.4 3.2E+02 0.007 25.3 6.9 53 170-227 153-206 (261)
69 PF14578 GTP_EFTU_D4: Elongati 23.1 52 0.0011 25.1 1.5 45 16-63 24-70 (81)
70 PRK09783 copper/silver efflux 23.0 3E+02 0.0064 26.3 7.0 57 128-184 258-322 (409)
71 PTZ00118 40S ribosomal protein 22.8 5.3E+02 0.011 23.9 8.2 53 170-227 153-206 (262)
72 PTZ00223 40S ribosomal protein 21.1 5.6E+02 0.012 23.9 8.0 53 170-227 150-203 (273)
73 PRK04313 30S ribosomal protein 20.8 4.7E+02 0.01 23.8 7.4 55 169-227 149-204 (237)
74 COG0006 PepP Xaa-Pro aminopept 20.4 53 0.0011 30.7 1.3 41 9-65 317-364 (384)
No 1
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.4e-34 Score=268.35 Aligned_cols=174 Identities=26% Similarity=0.352 Sum_probs=157.6
Q ss_pred heeeeeecCCeEEEEecCceeeeccccccc-ccccccCC-CCcccccCcccCCCCccccccCCCCCCCCCCCCCCCCccc
Q psy15204 16 SWICLFIIPKLTIIISDANVKTDVSSNPSA-SAADQSFP-DTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPSTPV 93 (232)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 93 (232)
.=+++.|+||++|.|.|+++.+||+|++|| +.++++.| ||+|||||++.. .++++|. |-+.+.
T Consensus 252 rVEsG~i~~g~~v~~~p~~~~~evksie~~~~~~~~a~~GD~i~~~vrgv~~------~dI~~Gd---v~~~~~------ 316 (428)
T COG5256 252 RVESGVIKPGQKVTFMPAGVVGEVKSIEMHHEEISQAEPGDNVGFNVRGVEK------NDIRRGD---VIGHSD------ 316 (428)
T ss_pred EEeeeeeccCCEEEEecCcceEEEeeeeecccccccCCCCCeEEEEecCCch------hccCCcc---EeccCC------
Confidence 568999999999999999999999999997 69999999 999999999954 5777776 655554
Q ss_pred ccccccccCCccCCCCCCCCcceEEEEEEeCCCccCcCCCCeEEEEEecceEEEEEEEeeeecccCccceeccCCcccCC
Q psy15204 94 SRSRSPATPTCTSPTPDQEPSRSVKLVKLSNVYQVGFIKELKVGMHQQSLAESAVITRLLSQVHKTSGEVIRKKPRALTK 173 (232)
Q Consensus 94 ~rg~v~a~p~~~~~~p~~~as~~a~Iv~L~~e~~~PI~~Gy~p~Lh~~T~~v~~rI~kI~~kIDk~Tg~~~kk~pk~Lk~ 173 (232)
..|.....|.++|.+| +|+.+|.+||+++||+|++.++|++.+|.+++|+.||+..+++|.+++.
T Consensus 317 -------------n~~t~s~~f~a~i~vl--~~p~~i~~Gyt~vlh~hta~~a~~~~~l~~k~d~~t~k~~~~~p~f~k~ 381 (428)
T COG5256 317 -------------NPPTVSPEFTAQIIVL--WHPGIITSGYTPVLHAHTAQVACRIAELLSKLDPRTGKKLEENPQFLKR 381 (428)
T ss_pred -------------CCcccccceEEEEEEE--ecCccccCCCccEEEecccceeeeHHHHHHhhCcccccccccChhhhhc
Confidence 2233334677788888 5899999999999999999999999999999999999998999999999
Q ss_pred CCeeEEEEEeCceEEeeeccCCCceeeEEEEECCCeEEEEEEEEee
Q psy15204 174 SMSAQVVIETVRPMCVELYRDVKELGRFMLRVSGVTIAAGLITKVI 219 (232)
Q Consensus 174 GD~A~V~I~l~kPI~vE~fs~~p~LGRFiLRD~g~TVAaGiI~~V~ 219 (232)
||.++|+|++.+|+|+|.++++++||||+|||+|+|||+|+|.++.
T Consensus 382 g~~~iv~i~~~kP~~~e~~~~~~~Lgrfalrd~g~tIA~G~v~~v~ 427 (428)
T COG5256 382 GDAAIVKIEPEKPLCLEKVSEIPQLGRFALRDMGQTIAAGKVLEVK 427 (428)
T ss_pred CceEEEEEEecCceEeeecccCCccceEEEEeCCCeEEeEEEEecc
Confidence 9999999999999999999999999999999999999999999874
No 2
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.98 E-value=1.2e-31 Score=255.38 Aligned_cols=177 Identities=19% Similarity=0.291 Sum_probs=158.0
Q ss_pred heeeeeecCCeEEEEecCceeeeccccccc-ccccccCC-CCcccccCcccCCCCccccccCCCCCCCCCCCCCCCCccc
Q psy15204 16 SWICLFIIPKLTIIISDANVKTDVSSNPSA-SAADQSFP-DTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPSTPV 93 (232)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 93 (232)
.=+.+.+++||.|.|.|.+.++.|+|+++| ..++++.| |++|++++++.. ..|
T Consensus 254 ~V~~G~l~~Gd~v~~~P~~~~~~VksI~~~~~~v~~a~aGd~v~i~l~~~~~-------------------------~~i 308 (447)
T PLN00043 254 RVETGVIKPGMVVTFGPTGLTTEVKSVEMHHESLQEALPGDNVGFNVKNVAV-------------------------KDL 308 (447)
T ss_pred EEECCEEeeCCEEEEcCCCCEEEEEEEEECCeEeCEecCCCeEEEEECCCCH-------------------------hhC
Confidence 345788999999999999999999999997 69999999 999999987632 137
Q ss_pred ccccccccCCccCCCC-CCCCcceEEEEEEeCCCccCcCCCCeEEEEEecceEEEEEEEeeeecccCccceeccCCcccC
Q psy15204 94 SRSRSPATPTCTSPTP-DQEPSRSVKLVKLSNVYQVGFIKELKVGMHQQSLAESAVITRLLSQVHKTSGEVIRKKPRALT 172 (232)
Q Consensus 94 ~rg~v~a~p~~~~~~p-~~~as~~a~Iv~L~~e~~~PI~~Gy~p~Lh~~T~~v~~rI~kI~~kIDk~Tg~~~kk~pk~Lk 172 (232)
+||+|++.+.. .| .....|+|+|+|| +++.+|..||+++||+|+.+++|+|++|.+++|++||+..+++|++|+
T Consensus 309 ~rG~vl~~~~~---~p~~~~~~F~A~i~~l--~~~~~i~~gy~~~~~~~t~~~~~~i~~i~~~ld~~t~~~~~~~p~~l~ 383 (447)
T PLN00043 309 KRGYVASNSKD---DPAKEAANFTSQVIIM--NHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLK 383 (447)
T ss_pred CCccEEccCCC---CCCccccEEEEEEEEE--CCCCCCCCCCeEEEEEccCEEEEEEEEeEEEeccCCccccccCccccc
Confidence 78999887532 23 3345689999999 489999999999999999999999999999999999988778899999
Q ss_pred CCCeeEEEEEeCceEEeeeccCCCceeeEEEEECCCeEEEEEEEEeeecc
Q psy15204 173 KSMSAQVVIETVRPMCVELYRDVKELGRFMLRVSGVTIAAGLITKVIFDQ 222 (232)
Q Consensus 173 ~GD~A~V~I~l~kPI~vE~fs~~p~LGRFiLRD~g~TVAaGiI~~V~~k~ 222 (232)
+||.|+|+|++++|+|+|+|++++.||||+|||+|+|||+|+|+++..+.
T Consensus 384 ~~~~a~v~i~~~~pi~~e~~~~~~~lGrf~lrd~~~Tva~G~v~~v~~~~ 433 (447)
T PLN00043 384 NGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKKD 433 (447)
T ss_pred CCCEEEEEEEECCcEEEEecccCCCCceEEEEECCCeEEEEEEEEEeccC
Confidence 99999999999999999999999999999999999999999999998654
No 3
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.97 E-value=5.8e-30 Score=240.45 Aligned_cols=173 Identities=23% Similarity=0.321 Sum_probs=155.2
Q ss_pred eeeeecCCeEEEEecCceeeeccccccc-ccccccCC-CCcccccCcccCCCCccccccCCCCCCCCCCCCCCCCccccc
Q psy15204 18 ICLFIIPKLTIIISDANVKTDVSSNPSA-SAADQSFP-DTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPSTPVSR 95 (232)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r 95 (232)
+.+.+++||.|.+.|.+.++.|+|+++| +.++++.| |++||+++++.. .-|+|
T Consensus 250 ~~G~i~~gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~l~~i~~-------------------------~~i~r 304 (426)
T TIGR00483 250 ETGVLKPGDKVVFEPAGVSGEVKSIEMHHEQIEQAEPGDNIGFNVRGVSK-------------------------KDIRR 304 (426)
T ss_pred ccceeecCCEEEECCCCcEEEEEEEEECCcccCEEcCCCEEEEEECCCCh-------------------------hhccc
Confidence 4678999999999999999999999997 69999999 999999887621 12789
Q ss_pred ccccccCCccCCCCCCCCcceEEEEEEeCCCccCcCCCCeEEEEEecceEEEEEEEeeeecccCccceeccCCcccCCCC
Q psy15204 96 SRSPATPTCTSPTPDQEPSRSVKLVKLSNVYQVGFIKELKVGMHQQSLAESAVITRLLSQVHKTSGEVIRKKPRALTKSM 175 (232)
Q Consensus 96 g~v~a~p~~~~~~p~~~as~~a~Iv~L~~e~~~PI~~Gy~p~Lh~~T~~v~~rI~kI~~kIDk~Tg~~~kk~pk~Lk~GD 175 (232)
||+++.|.. .|.....|+++++|| +++.||..||++++|+||.+++|+|++|.+++|+++++..+++|++|++||
T Consensus 305 G~vl~~~~~---~~~~~~~f~a~v~~l--~~~~~i~~g~~~~~~~~t~~~~~~i~~i~~~~~~~t~~~~~~~p~~l~~g~ 379 (426)
T TIGR00483 305 GDVCGHPDN---PPKVAKEFTAQIVVL--QHPGAITVGYTPVFHCHTAQIACRFDELLKKNDPRTGQVLEENPQFLKTGD 379 (426)
T ss_pred ceEEecCCC---CCceeeEEEEEEEEE--CCCCccCCCCeEEEEecCcEEEEEEEEEEEEecCccccccCCCCceeCCCC
Confidence 999998853 233334589999999 478899999999999999999999999999999999988888999999999
Q ss_pred eeEEEEEeCceEEeeeccCCCceeeEEEEECCCeEEEEEEEEeee
Q psy15204 176 SAQVVIETVRPMCVELYRDVKELGRFMLRVSGVTIAAGLITKVIF 220 (232)
Q Consensus 176 ~A~V~I~l~kPI~vE~fs~~p~LGRFiLRD~g~TVAaGiI~~V~~ 220 (232)
.|.|+|++++|+|+|+|++++.+|||+|||+|+|||+|+|+++..
T Consensus 380 ~a~v~l~~~~pi~~e~~~~~~~~grf~lr~~g~tv~~G~v~~~~~ 424 (426)
T TIGR00483 380 AAIVKFKPTKPMVIEAVKEIPPLGRFAIRDMGQTVAAGMIIDVDP 424 (426)
T ss_pred EEEEEEEECCeeEEeecccCCCCccEEEEECCCEEEEEEEEEeee
Confidence 999999999999999999999999999999999999999998864
No 4
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.97 E-value=6e-30 Score=240.05 Aligned_cols=174 Identities=21% Similarity=0.299 Sum_probs=156.8
Q ss_pred eeeeecCCeEEEEecCceeeeccccccc-ccccccCC-CCcccccCcccCCCCccccccCCCCCCCCCCCCCCCCccccc
Q psy15204 18 ICLFIIPKLTIIISDANVKTDVSSNPSA-SAADQSFP-DTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPSTPVSR 95 (232)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r 95 (232)
+.+.+++||+|.+.|.+..+.|+|+++| +.+++|.| |++|++++++.. ..++|
T Consensus 248 ~~G~v~~Gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~l~~~~~-------------------------~~i~r 302 (425)
T PRK12317 248 ETGVLKVGDKVVFMPAGVVGEVKSIEMHHEELPQAEPGDNIGFNVRGVGK-------------------------KDIKR 302 (425)
T ss_pred eeccEecCCEEEECCCCCeEEEEEEEECCcccCEECCCCeEEEEECCCCH-------------------------HHccC
Confidence 5678899999999999999999999997 69999999 999999987621 13678
Q ss_pred ccccccCCccCCCCCCCCcceEEEEEEeCCCccCcCCCCeEEEEEecceEEEEEEEeeeecccCccceeccCCcccCCCC
Q psy15204 96 SRSPATPTCTSPTPDQEPSRSVKLVKLSNVYQVGFIKELKVGMHQQSLAESAVITRLLSQVHKTSGEVIRKKPRALTKSM 175 (232)
Q Consensus 96 g~v~a~p~~~~~~p~~~as~~a~Iv~L~~e~~~PI~~Gy~p~Lh~~T~~v~~rI~kI~~kIDk~Tg~~~kk~pk~Lk~GD 175 (232)
||+++.|.. .|.....|+|+|+|| +++.+|.+||++++|++|.+++|+|++|.+++|++|++..+++|++|++||
T Consensus 303 G~vl~~~~~---~~~~~~~f~a~v~~l--~~~~~i~~G~~~~~~~~t~~~~~~i~~i~~~~d~~t~~~~~~~p~~l~~g~ 377 (425)
T PRK12317 303 GDVCGHPDN---PPTVAEEFTAQIVVL--QHPSAITVGYTPVFHAHTAQVACTFEELVKKLDPRTGQVAEENPQFIKTGD 377 (425)
T ss_pred ccEecCCCC---CCCcccEEEEEEEEE--CCCCcCCCCCeEEEEEcCcEEEEEEEEEEEEeccccccccCCCCcEECCCC
Confidence 999998852 344445689999999 478999999999999999999999999999999999988788999999999
Q ss_pred eeEEEEEeCceEEeeeccCCCceeeEEEEECCCeEEEEEEEEeeec
Q psy15204 176 SAQVVIETVRPMCVELYRDVKELGRFMLRVSGVTIAAGLITKVIFD 221 (232)
Q Consensus 176 ~A~V~I~l~kPI~vE~fs~~p~LGRFiLRD~g~TVAaGiI~~V~~k 221 (232)
.|.|+|++.+|+|+|+|++++.||||+|||+|+|||+|+|+++...
T Consensus 378 ~a~v~l~~~~p~~~~~~~~~~~lgrfilr~~g~tv~~G~i~~v~~~ 423 (425)
T PRK12317 378 AAIVKIKPTKPLVIEKVKEIPQLGRFAIRDMGQTIAAGMVIDVKPA 423 (425)
T ss_pred EEEEEEEECCeeEEEeCCcCCCCccEEEEECCCeEEEEEEEEeccC
Confidence 9999999999999999999999999999999999999999998754
No 5
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.97 E-value=1.8e-29 Score=240.26 Aligned_cols=180 Identities=21% Similarity=0.333 Sum_probs=159.0
Q ss_pred eeeeeecCCeEEEEecCceeeeccccccc-ccccccCC-CCcccccCcccCCCCccccccCCCCCCCCCCCCCCCCcccc
Q psy15204 17 WICLFIIPKLTIIISDANVKTDVSSNPSA-SAADQSFP-DTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPSTPVS 94 (232)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 94 (232)
=+.+.+++||+|.+.|.+..+.|+|+++| +..++|.| |++|++++++.. .-|+
T Consensus 255 V~~G~l~~Gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~L~~i~~-------------------------~~v~ 309 (446)
T PTZ00141 255 VETGILKPGMVVTFAPSGVTTEVKSVEMHHEQLAEAVPGDNVGFNVKNVSV-------------------------KDIK 309 (446)
T ss_pred EEcceEecCCEEEEccCCcEEEEEEEEecCcccCEECCCCEEEEEECCCCH-------------------------HHcC
Confidence 45788999999999999999999999997 69999999 999999877531 1367
Q ss_pred cccccccCCccCCCCCCCCcceEEEEEEeCCCccCcCCCCeEEEEEecceEEEEEEEeeeecccCccceeccCCcccCCC
Q psy15204 95 RSRSPATPTCTSPTPDQEPSRSVKLVKLSNVYQVGFIKELKVGMHQQSLAESAVITRLLSQVHKTSGEVIRKKPRALTKS 174 (232)
Q Consensus 95 rg~v~a~p~~~~~~p~~~as~~a~Iv~L~~e~~~PI~~Gy~p~Lh~~T~~v~~rI~kI~~kIDk~Tg~~~kk~pk~Lk~G 174 (232)
||+||+.+... .+.....|+++|+||+ ++.+|.+||++++|++|.+++|+|++|.+++|+++++..+++|++|++|
T Consensus 310 rG~vl~~~~~~--p~~~~~~f~a~i~~l~--~~~~i~~G~~~vl~~~t~~~~~~i~~i~~~ld~~t~~~~~~~p~~l~~g 385 (446)
T PTZ00141 310 RGYVASDSKND--PAKECADFTAQVIVLN--HPGQIKNGYTPVLDCHTAHIACKFAEIESKIDRRSGKVLEENPKAIKSG 385 (446)
T ss_pred CceEEecCCCC--CCccceEEEEEEEEEC--CCCccCCCCeEEEEEeceEEEEEEEEEEEEeccccccccCCCCcEECCC
Confidence 89999886421 1223456899999994 7899999999999999999999999999999999998777889999999
Q ss_pred CeeEEEEEeCceEEeeeccCCCceeeEEEEECCCeEEEEEEEEeeeccCCcc
Q psy15204 175 MSAQVVIETVRPMCVELYRDVKELGRFMLRVSGVTIAAGLITKVIFDQCGST 226 (232)
Q Consensus 175 D~A~V~I~l~kPI~vE~fs~~p~LGRFiLRD~g~TVAaGiI~~V~~k~~G~~ 226 (232)
|.+.|+|++++|+|+|+|++++.+|||+|||+|+|||+|+|+++..++ |++
T Consensus 386 ~~a~v~l~~~~pi~~e~~~~~~~lgrfilrd~g~tva~G~I~~v~~~~-~~~ 436 (446)
T PTZ00141 386 DAAIVKMVPTKPMCVEVFNEYPPLGRFAVRDMKQTVAVGVIKSVEKKE-GSG 436 (446)
T ss_pred CEEEEEEEECCceEEeecccCCCCccEEEEECCCEEEEEEEEEEecCC-Ccc
Confidence 999999999999999999999999999999999999999999998665 543
No 6
>cd03704 eRF3c_III This family represents eEF1alpha-like C-terminal region of eRF3 homologous to the domain III of EF-Tu. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. The C-terminal region is responsible for translation termination activity and is essential for viability. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-like protein with the property of aggregating into polymer-like fibrils.
Probab=99.95 E-value=1.3e-27 Score=186.22 Aligned_cols=104 Identities=28% Similarity=0.488 Sum_probs=97.7
Q ss_pred CcceEEEEEEeCCCc-cCcCCCCeEEEEEecceEEEEEEEeeeecccCccceeccCCcccCCCCeeEEEEEeCceEEeee
Q psy15204 113 PSRSVKLVKLSNVYQ-VGFIKELKVGMHQQSLAESAVITRLLSQVHKTSGEVIRKKPRALTKSMSAQVVIETVRPMCVEL 191 (232)
Q Consensus 113 as~~a~Iv~L~~e~~-~PI~~Gy~p~Lh~~T~~v~~rI~kI~~kIDk~Tg~~~kk~pk~Lk~GD~A~V~I~l~kPI~vE~ 191 (232)
..|.++|+||+ ++ .+|.+||+|+||+||.+++|+|++|.+++|+++|+..+++|++|++||.|+|+|++++|+|+|+
T Consensus 4 ~~F~A~i~vl~--~~~~~i~~Gy~~~l~~~t~~~~~~i~~i~~~~d~~~g~~~~~~p~~l~~g~~a~v~i~~~~pi~~e~ 81 (108)
T cd03704 4 TEFEAQIAILE--LKRSIITAGYSAVLHIHTAVEEVTIKKLIALIDKKTGKKSKKRPRFVKSGMKVIARLETTGPICLEK 81 (108)
T ss_pred cEEEEEEEEEe--CCCCcCcCCCEEEEEEcccEEeEEEehhhhhhccccCcccccCCcEeCCCCEEEEEEEeCCcEEEEE
Confidence 35789999995 67 8899999999999999999999999999999998876778999999999999999999999999
Q ss_pred ccCCCceeeEEEEECCCeEEEEEEEEe
Q psy15204 192 YRDVKELGRFMLRVSGVTIAAGLITKV 218 (232)
Q Consensus 192 fs~~p~LGRFiLRD~g~TVAaGiI~~V 218 (232)
|++++.||||+|||+|+|||+|+|+++
T Consensus 82 ~~~~~~lGRf~lR~~g~Tva~G~V~~~ 108 (108)
T cd03704 82 FEDFPQLGRFTLRDEGKTIAIGKVLKL 108 (108)
T ss_pred cccCCCcccEEEEeCCCEEEEEEEEEC
Confidence 999999999999999999999999764
No 7
>cd04093 HBS1_C HBS1_C: this family represents the C-terminal domain of Hsp70 subfamily B suppressor 1 (HBS1) which is homologous to the domain III of EF-1alpha. This group contains proteins similar to yeast Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation and, to associate with Dom34. It has been speculated that yeast Hbs1 and Dom34 proteins may function as part of a complex with a role in gene expression.
Probab=99.95 E-value=5.4e-27 Score=181.71 Aligned_cols=104 Identities=41% Similarity=0.624 Sum_probs=98.2
Q ss_pred CcceEEEEEEeCCCccCcCCCCeEEEEEecceEEEEEEEeeeecccCccceeccCCcccCCCCeeEEEEEeCceEEeeec
Q psy15204 113 PSRSVKLVKLSNVYQVGFIKELKVGMHQQSLAESAVITRLLSQVHKTSGEVIRKKPRALTKSMSAQVVIETVRPMCVELY 192 (232)
Q Consensus 113 as~~a~Iv~L~~e~~~PI~~Gy~p~Lh~~T~~v~~rI~kI~~kIDk~Tg~~~kk~pk~Lk~GD~A~V~I~l~kPI~vE~f 192 (232)
..|+++|+||+ ++.||.+||+|+||+||.+++|+|.+|.+++|++|++..++++++|++||+|+|+|++++|+|+|+|
T Consensus 4 ~~f~A~v~~l~--~~~pl~~G~~~~l~~~t~~~~~~v~~I~~~~d~~t~~~~~~~~~~l~~~~~a~v~l~~~~pi~~e~~ 81 (107)
T cd04093 4 TRFEARILTFN--VDKPILPGTPFELFRHSLKEPATITKLVSILDKSTGEVSKKKPRCLTKGQTAIVEIELERPIPLELF 81 (107)
T ss_pred cEEEEEEEEEC--CCcccCCCCcEEEEecccEEeEEEEEeeEEeccCCCcEeccCCcCcCCCCEEEEEEEECCeEEEEEc
Confidence 35789999994 6899999999999999999999999999999999998766789999999999999999999999999
Q ss_pred cCCCceeeEEEEECCCeEEEEEEEEe
Q psy15204 193 RDVKELGRFMLRVSGVTIAAGLITKV 218 (232)
Q Consensus 193 s~~p~LGRFiLRD~g~TVAaGiI~~V 218 (232)
++++.||||+||++|+|||+|+|+++
T Consensus 82 ~~~~~~Grfilr~~~~Tva~G~I~~i 107 (107)
T cd04093 82 KDNKELGRVVLRRDGETIAAGLVTEI 107 (107)
T ss_pred ccCCCcceEEEEcCCCEEEEEEEEeC
Confidence 99999999999999999999999875
No 8
>cd03705 EF1_alpha_III Domain III of EF-1. Eukaryotic elongation factor 1 (EF-1) is responsible for the GTP-dependent binding of aminoacyl-tRNAs to ribosomes. EF-1 is composed of four subunits: the alpha chain, which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This family is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF-1 alpha) and eukaryotes (eEF-1 alpha).
Probab=99.94 E-value=5.9e-27 Score=180.64 Aligned_cols=101 Identities=22% Similarity=0.364 Sum_probs=95.5
Q ss_pred CcceEEEEEEeCCCccCcCCCCeEEEEEecceEEEEEEEeeeecccCccceeccCCcccCCCCeeEEEEEeCceEEeeec
Q psy15204 113 PSRSVKLVKLSNVYQVGFIKELKVGMHQQSLAESAVITRLLSQVHKTSGEVIRKKPRALTKSMSAQVVIETVRPMCVELY 192 (232)
Q Consensus 113 as~~a~Iv~L~~e~~~PI~~Gy~p~Lh~~T~~v~~rI~kI~~kIDk~Tg~~~kk~pk~Lk~GD~A~V~I~l~kPI~vE~f 192 (232)
.+|+++|+||+ ++.||.+||+|+||+||.+++|+|.+|.+++|.++++..+++|++|++||.|+|+|++++|+|+|+|
T Consensus 4 ~~f~A~v~~l~--~~~pl~~G~~~~~~~~t~~~~~~I~~i~~~~d~~t~~~~~~~~~~l~~n~~a~v~l~~~~pi~~e~~ 81 (104)
T cd03705 4 ESFTAQVIVLN--HPGQIKPGYTPVLDCHTAHVACRFAEILSKIDPRTGKKLEENPKFLKSGDAAIVKIVPQKPLVVETF 81 (104)
T ss_pred cEEEEEEEEEC--CCCcccCCceEEEEeccceEeEEEEhhhhhhccccCCccccCcCccCCCCEEEEEEEECCeeEEEEc
Confidence 35789999995 6799999999999999999999999999999999998766789999999999999999999999999
Q ss_pred cCCCceeeEEEEECCCeEEEEEE
Q psy15204 193 RDVKELGRFMLRVSGVTIAAGLI 215 (232)
Q Consensus 193 s~~p~LGRFiLRD~g~TVAaGiI 215 (232)
++++.||||+|||+|+|||+|+|
T Consensus 82 ~~~~~lgrf~lrd~~~Tva~G~v 104 (104)
T cd03705 82 SEYPPLGRFAVRDMGQTVAVGIV 104 (104)
T ss_pred ccCCCccCEEEEeCCCEEEEEEC
Confidence 99999999999999999999986
No 9
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.94 E-value=2.8e-26 Score=225.79 Aligned_cols=169 Identities=14% Similarity=0.186 Sum_probs=149.4
Q ss_pred eeeeeecCCeEEEEecCceeeeccccccc-ccccccCC-CCcccccCcccCCCCccccccCCCCCCCCCCCCCCCCcccc
Q psy15204 17 WICLFIIPKLTIIISDANVKTDVSSNPSA-SAADQSFP-DTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPSTPVS 94 (232)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 94 (232)
=+++.+++||+|.|-|.+.++.|+|+++| ..++++.| |++|+++++- ..|+
T Consensus 263 v~~G~l~~gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~l~~~---------------------------~~i~ 315 (632)
T PRK05506 263 VASGVVRPGDEVVVLPSGKTSRVKRIVTPDGDLDEAFAGQAVTLTLADE---------------------------IDIS 315 (632)
T ss_pred EecceeecCCEEEEcCCCceEEEEEEEECCceeCEEcCCCeEEEEecCc---------------------------cccC
Confidence 35789999999999999999999999997 69999999 9999987521 1378
Q ss_pred cccccccCCccCCCCCCCCcceEEEEEEeCCCccCcCCCCeEEEEEecceEEEEEEEeeeecccCccceeccCCcccCCC
Q psy15204 95 RSRSPATPTCTSPTPDQEPSRSVKLVKLSNVYQVGFIKELKVGMHQQSLAESAVITRLLSQVHKTSGEVIRKKPRALTKS 174 (232)
Q Consensus 95 rg~v~a~p~~~~~~p~~~as~~a~Iv~L~~e~~~PI~~Gy~p~Lh~~T~~v~~rI~kI~~kIDk~Tg~~~kk~pk~Lk~G 174 (232)
|||||+.|+.. |.....|+++++||+ +.++.+||++++|+||.+++|+|.+|.+++|++|++. ++|++|++|
T Consensus 316 rG~vL~~~~~~---~~~~~~f~a~i~~l~---~~~~~~g~~~~l~~gt~~~~a~i~~i~~~~d~~t~~~--~~p~~l~~g 387 (632)
T PRK05506 316 RGDMLARADNR---PEVADQFDATVVWMA---EEPLLPGRPYLLKHGTRTVPASVAAIKYRVDVNTLER--LAAKTLELN 387 (632)
T ss_pred CccEEecCCCC---CcceeEEEEEEEEec---ccccCCCCeEEEEeCCCEEEEEEEEEEEEecCCCCcc--CCcceeCCC
Confidence 99999998641 223445889999995 4578899999999999999999999999999999874 789999999
Q ss_pred CeeEEEEEeCceEEeeeccCCCceeeEEEEE--CCCeEEEEEEEEeee
Q psy15204 175 MSAQVVIETVRPMCVELYRDVKELGRFMLRV--SGVTIAAGLITKVIF 220 (232)
Q Consensus 175 D~A~V~I~l~kPI~vE~fs~~p~LGRFiLRD--~g~TVAaGiI~~V~~ 220 (232)
|.+.|+|++.+|+|+|.|++++.||||+||| +|+|||+|+|+..+.
T Consensus 388 ~~~~v~l~~~~pi~~e~~~~~~~lGRfilrdr~~~~Tva~G~I~~~~~ 435 (632)
T PRK05506 388 EIGRCNLSTDAPIAFDPYARNRTTGSFILIDRLTNATVGAGMIDFALR 435 (632)
T ss_pred CEEEEEEEECCEEeeeeccccccCceEEEEeccCCceEEEEEECcccc
Confidence 9999999999999999999999999999966 799999999998776
No 10
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.94 E-value=3.4e-26 Score=219.31 Aligned_cols=168 Identities=11% Similarity=0.152 Sum_probs=148.4
Q ss_pred eeeeeecCCeEEEEecCceeeeccccccc-ccccccCC-CCcccccCcccCCCCccccccCCCCCCCCCCCCCCCCcccc
Q psy15204 17 WICLFIIPKLTIIISDANVKTDVSSNPSA-SAADQSFP-DTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPSTPVS 94 (232)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 94 (232)
=+.+.+++||+|.+-|.+.++.|+|+++| ...+++.| |++|+++++- ..++
T Consensus 267 V~sG~l~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aG~~V~l~L~~~---------------------------~~i~ 319 (474)
T PRK05124 267 LASGVVKVGDRVKVLPSGKESNVARIVTFDGDLEEAFAGEAITLVLEDE---------------------------IDIS 319 (474)
T ss_pred EEeEEEecCCEEEEecCCceEEEEEEEEcCccccCcCCCCEEEEEeCCc---------------------------cccC
Confidence 35789999999999999999999999997 68999999 9999988521 1267
Q ss_pred cccccccCCccCCCCCCCCcceEEEEEEeCCCccCcCCCCeEEEEEecceEEEEEEEeeeecccCccceeccCCcccCCC
Q psy15204 95 RSRSPATPTCTSPTPDQEPSRSVKLVKLSNVYQVGFIKELKVGMHQQSLAESAVITRLLSQVHKTSGEVIRKKPRALTKS 174 (232)
Q Consensus 95 rg~v~a~p~~~~~~p~~~as~~a~Iv~L~~e~~~PI~~Gy~p~Lh~~T~~v~~rI~kI~~kIDk~Tg~~~kk~pk~Lk~G 174 (232)
||+||+.|+.. |.....|+++++||. +.+|.+||+|+||+||.+++|+|.+|.+++|++|++. .+++.|++|
T Consensus 320 rG~VL~~~~~~---~~~~~~f~a~i~~l~---~~~i~~G~~~~l~~gt~~~~a~i~~i~~~id~~t~~~--~~~~~l~~g 391 (474)
T PRK05124 320 RGDLLVAADEA---LQAVQHASADVVWMA---EQPLQPGQSYDIKIAGKKTRARVDAIRYQVDINTLTQ--REAENLPLN 391 (474)
T ss_pred CccEEECCCCC---CccceEEEEEEEEeC---CcccCCCCeEEEEeCCCEEEEEEEEEeeeeccCCCcc--cCccccCCC
Confidence 99999998532 333455789999994 6889999999999999999999999999999999975 468899999
Q ss_pred CeeEEEEEeCceEEeeeccCCCceeeEEEE--ECCCeEEEEEEEEee
Q psy15204 175 MSAQVVIETVRPMCVELYRDVKELGRFMLR--VSGVTIAAGLITKVI 219 (232)
Q Consensus 175 D~A~V~I~l~kPI~vE~fs~~p~LGRFiLR--D~g~TVAaGiI~~V~ 219 (232)
|.|.|+|++++|+|+|+|+++|.||||+|| ++++|||+|+|++..
T Consensus 392 ~~a~v~l~~~~pv~~e~~~~~~~lGRfil~dr~~~~tva~G~V~~~~ 438 (474)
T PRK05124 392 GIGLVELTFDEPLVLDPYQQNRVTGGFIFIDRLTNVTVGAGMVREPL 438 (474)
T ss_pred CEEEEEEEECCeeccccCCcCCcceeEEEEECCCCceEEEEEEeccc
Confidence 999999999999999999999999999995 569999999999876
No 11
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.94 E-value=2.8e-26 Score=215.42 Aligned_cols=164 Identities=15% Similarity=0.195 Sum_probs=144.9
Q ss_pred eeeeeecCCeEEEEecCceeeeccccccc-ccccccCC-CCcccccCcccCCCCccccccCCCCCCCCCCCCCCCCcccc
Q psy15204 17 WICLFIIPKLTIIISDANVKTDVSSNPSA-SAADQSFP-DTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPSTPVS 94 (232)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 94 (232)
=+.+.+++||.|.|.|.+..+.|+|+++| ..++++.| |++|+++++- ..++
T Consensus 239 v~~G~l~~gd~v~i~P~~~~~~VksI~~~~~~~~~a~~G~~v~l~l~~~---------------------------~~i~ 291 (406)
T TIGR02034 239 IASGSVHVGDEVVVLPSGRSSRVARIVTFDGDLEQARAGQAVTLTLDDE---------------------------IDIS 291 (406)
T ss_pred EecceeecCCEEEEeCCCcEEEEEEEEECCcccCEeCCCCEEEEEECCc---------------------------cccC
Confidence 35788999999999999999999999997 69999999 9999987520 1368
Q ss_pred cccccccCCccCCCCCCCCcceEEEEEEeCCCccCcCCCCeEEEEEecceEEEEEEEeeeecccCccceeccCCcccCCC
Q psy15204 95 RSRSPATPTCTSPTPDQEPSRSVKLVKLSNVYQVGFIKELKVGMHQQSLAESAVITRLLSQVHKTSGEVIRKKPRALTKS 174 (232)
Q Consensus 95 rg~v~a~p~~~~~~p~~~as~~a~Iv~L~~e~~~PI~~Gy~p~Lh~~T~~v~~rI~kI~~kIDk~Tg~~~kk~pk~Lk~G 174 (232)
||+|++.|+. .|.....|+++++||. +.+|..||++.||+|+.+++|+|.+|.+++|++||+. .+++.|++|
T Consensus 292 rG~vl~~~~~---~~~~~~~f~a~i~~l~---~~~i~~g~~~~l~~gt~~~~~~i~~i~~~~d~~t~~~--~~~~~l~~~ 363 (406)
T TIGR02034 292 RGDLLAAADS---APEVADQFAATLVWMA---EEPLLPGRSYDLKLGTRKVRASVAAIKHKVDVNTLEK--GAAKSLELN 363 (406)
T ss_pred CccEEEcCCC---CCCcceEEEEEEEEeC---hhhcCCCCEEEEEeCCCEEEEEEEEEEEEecCCCCcc--cCCcccCCC
Confidence 9999999854 2334455789999994 4799999999999999999999999999999999974 567999999
Q ss_pred CeeEEEEEeCceEEeeeccCCCceeeEEE--EECCCeEEEEEE
Q psy15204 175 MSAQVVIETVRPMCVELYRDVKELGRFML--RVSGVTIAAGLI 215 (232)
Q Consensus 175 D~A~V~I~l~kPI~vE~fs~~p~LGRFiL--RD~g~TVAaGiI 215 (232)
|.|.|+|++++|+|+|.|++++.||||+| |++|+|||+|+|
T Consensus 364 ~~~~v~l~~~~p~~~~~~~~~~~lGr~~l~d~~~~~tva~G~I 406 (406)
T TIGR02034 364 EIGRVNLSLDEPIAFDPYAENRTTGAFILIDRLSNRTVGAGMI 406 (406)
T ss_pred CEEEEEEEECCeeccCcccCCCcceeEEEEECCCCCeEEEEeC
Confidence 99999999999999999999999999999 557999999986
No 12
>KOG0052|consensus
Probab=99.94 E-value=5.1e-27 Score=219.85 Aligned_cols=182 Identities=22% Similarity=0.317 Sum_probs=169.5
Q ss_pred eeeeeecCCeEEEEecCceeeeccccccc-ccccccCC-CCcccccCcccCCCCccccccCCCCCCCCCCCCCCCCcccc
Q psy15204 17 WICLFIIPKLTIIISDANVKTDVSSNPSA-SAADQSFP-DTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPSTPVS 94 (232)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 94 (232)
=++..++|++.+.+.|.++++++++.+|| .++++.+| ||+|||++++.+ +.+++|| |.++|+
T Consensus 197 ~~t~iie~~~~v~~~~~~~~~~vk~~~~~~~a~s~~~p~~~vG~~~~~v~v------~~i~~gn---V~~dsK------- 260 (391)
T KOG0052|consen 197 VETGISEPGMDVTFAPSGVTTEVKSVKVHHEAGSEDLPGDNVGFNVKNVSV------KDIDRGN---VVGDSK------- 260 (391)
T ss_pred eeeeeccCccceeccccccccccccEEEEeccCccCCCcceeeeecccCcc------Ccccccc---eecccc-------
Confidence 56889999999999999999999999997 58889999 999999999998 6777998 888887
Q ss_pred cccccccCCccCCCCCCC-CcceEEEEEEeCCCccCcCCCCeEEEEEecceEEEEEEEeeeecccCccceeccCCcccCC
Q psy15204 95 RSRSPATPTCTSPTPDQE-PSRSVKLVKLSNVYQVGFIKELKVGMHQQSLAESAVITRLLSQVHKTSGEVIRKKPRALTK 173 (232)
Q Consensus 95 rg~v~a~p~~~~~~p~~~-as~~a~Iv~L~~e~~~PI~~Gy~p~Lh~~T~~v~~rI~kI~~kIDk~Tg~~~kk~pk~Lk~ 173 (232)
..|..+ +.+.+|+.+| +|+..|..||.|+|.|||+++.|++.+|..++|..+++..++.|+++++
T Consensus 261 ------------~~p~~~~~g~t~qviil--nhpgqis~gy~pvldcht~hiacKfael~~Kid~~sg~~~e~~pk~~~~ 326 (391)
T KOG0052|consen 261 ------------NDPPVEAAGFTAQVIIL--NHPGQISVGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDEPKFLKS 326 (391)
T ss_pred ------------cCCccccccceeeEEEe--cCccccCCCccccccccccceeeehhhchhhhhcCCceeecCCCccccC
Confidence 335555 4578999999 7999999999999999999999999999999999999998999999999
Q ss_pred CCeeEEEEEeCceEEeeeccCCCceeeEEEEECCCeEEEEEEEEeeeccCCcccc
Q psy15204 174 SMSAQVVIETVRPMCVELYRDVKELGRFMLRVSGVTIAAGLITKVIFDQCGSTNL 228 (232)
Q Consensus 174 GD~A~V~I~l~kPI~vE~fs~~p~LGRFiLRD~g~TVAaGiI~~V~~k~~G~~~~ 228 (232)
+|.+.+.+.+.+|+|+|.|++++.||||.+||+..|||.|+|.++.++..|+.+.
T Consensus 327 ~daai~~~vp~kp~~ve~~~~~~~l~rfav~d~~~tvavgvikav~k~~~~~~k~ 381 (391)
T KOG0052|consen 327 GDAAIVEMVPGKPLCVESFSDYVPLGRFAVRDMRQTVAVGVIKAVDKKDAGAGKV 381 (391)
T ss_pred CcceeeeeccCCccccccccccccccchhhhhhhccccccceeeeeecccccccc
Confidence 9999999999999999999999999999999999999999999999999888775
No 13
>cd04095 CysN_NoDQ_III TCysN_NoDQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which s
Probab=99.92 E-value=2.3e-24 Score=166.69 Aligned_cols=98 Identities=19% Similarity=0.250 Sum_probs=91.1
Q ss_pred CcceEEEEEEeCCCccCcCCCCeEEEEEecceEEEEEEEeeeecccCccceeccCCcccCCCCeeEEEEEeCceEEeeec
Q psy15204 113 PSRSVKLVKLSNVYQVGFIKELKVGMHQQSLAESAVITRLLSQVHKTSGEVIRKKPRALTKSMSAQVVIETVRPMCVELY 192 (232)
Q Consensus 113 as~~a~Iv~L~~e~~~PI~~Gy~p~Lh~~T~~v~~rI~kI~~kIDk~Tg~~~kk~pk~Lk~GD~A~V~I~l~kPI~vE~f 192 (232)
.+|.++|+||+ +.||.+||+|+||+||.+++|+|++|.+++|+++++. .+|++|+.||+|+|+|++++|+|+|+|
T Consensus 4 ~~f~a~i~~l~---~~pl~~G~~~~l~~~t~~~~~~i~~i~~~id~~t~~~--~~~~~l~~n~~a~v~i~~~~pi~~d~~ 78 (103)
T cd04095 4 DQFAATLVWMD---EEPLRPGRKYLLKLGTRTVRATVTAIKYRVDVNTLEH--EAADTLELNDIGRVELSLSKPLAFDPY 78 (103)
T ss_pred ceeeEEEEEec---CcccCCCCEEEEEEcCCEEEEEEeeeeEEEcCCCCCc--cCCCEECCCCeEEEEEEeCCccEecch
Confidence 35789999995 5699999999999999999999999999999999874 488999999999999999999999999
Q ss_pred cCCCceeeEEEEEC--CCeEEEEEE
Q psy15204 193 RDVKELGRFMLRVS--GVTIAAGLI 215 (232)
Q Consensus 193 s~~p~LGRFiLRD~--g~TVAaGiI 215 (232)
++++.+|||+|||. |+|||+|+|
T Consensus 79 ~~~~~~GrfiliD~~~~~tva~G~i 103 (103)
T cd04095 79 RENRATGSFILIDRLTNATVGAGMI 103 (103)
T ss_pred hhCCCcceEEEEECCCCcEEEEEeC
Confidence 99999999999765 999999986
No 14
>KOG0459|consensus
Probab=99.91 E-value=3.2e-24 Score=202.40 Aligned_cols=171 Identities=22% Similarity=0.347 Sum_probs=150.4
Q ss_pred eeeeeecCCeEEEEecCceeeeccccccc-ccccccCC-CCcccccCcccCCCCccccccCCCCCCCCCCCCCCCCcccc
Q psy15204 17 WICLFIIPKLTIIISDANVKTDVSSNPSA-SAADQSFP-DTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPSTPVS 94 (232)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 94 (232)
-+|+-++-|+.+.+-|.+..-+|.+|-.- --.+.+-| ||+-+.+|++-. -++-+|
T Consensus 327 vEsGsi~kg~~lvvMPnk~~veV~~I~~ddvE~~~~~pGenvk~rlkgiee------edi~~G----------------- 383 (501)
T KOG0459|consen 327 VESGSIKKGQQLVVMPNKTNVEVLGIYSDDVETDRVAPGENVKLRLKGIEE------EDISPG----------------- 383 (501)
T ss_pred ecccceecCCeEEEccCCcceEEEEEecccceeeeccCCcceEEEecccch------hhccCc-----------------
Confidence 46788999999999999999999998775 47888999 999999999854 234333
Q ss_pred cccccccCCccCCCCCCCCc-ceEEEEEEeCCCccCcCCCCeEEEEEecceEEEEEEEeeeecccCccceeccCCcccCC
Q psy15204 95 RSRSPATPTCTSPTPDQEPS-RSVKLVKLSNVYQVGFIKELKVGMHQQSLAESAVITRLLSQVHKTSGEVIRKKPRALTK 173 (232)
Q Consensus 95 rg~v~a~p~~~~~~p~~~as-~~a~Iv~L~~e~~~PI~~Gy~p~Lh~~T~~v~~rI~kI~~kIDk~Tg~~~kk~pk~Lk~ 173 (232)
+..|+..+|....+ |.++|++| +|+..|++||+++||+||+...|.| ++.+++|++||+..+++|+|++.
T Consensus 384 ------fiL~~~~n~~~s~~~F~aqi~Il--E~~sIi~~GY~~VlHIht~ieEv~i-~li~~idkktg~ksKkrprFvkq 454 (501)
T KOG0459|consen 384 ------FILCSPNNPCKSGRTFDAQIVIL--EHKSIICAGYSCVLHIHTAVEEVEI-KLIHLIDKKTGEKSKKRPRFVKQ 454 (501)
T ss_pred ------eEEecCCCccccccEEEEEEEEE--ecCceeccCcceEeeeeeehhheee-eeeeeecccccccccCCCeeecC
Confidence 23344466666644 78999999 6999999999999999999999999 68899999999999999999999
Q ss_pred CCeeEEEEEeCceEEeeeccCCCceeeEEEEECCCeEEEEEEEEee
Q psy15204 174 SMSAQVVIETVRPMCVELYRDVKELGRFMLRVSGVTIAAGLITKVI 219 (232)
Q Consensus 174 GD~A~V~I~l~kPI~vE~fs~~p~LGRFiLRD~g~TVAaGiI~~V~ 219 (232)
|+.++++|++..|||+|.|+++|++|||+|||+|+|||+|+|+++.
T Consensus 455 ~~~~iarl~t~~~iCle~fkd~pqmgRFtLRdegkTIAiGkV~kv~ 500 (501)
T KOG0459|consen 455 GQKCIARLETEGPICLETFKDYPQMGRFTLRDEGKTIAIGKVLKVV 500 (501)
T ss_pred CcEEEEEEecCCcEehhhcccchhhcceEEecCCcEEEEEEEEeec
Confidence 9999999999999999999999999999999999999999999875
No 15
>cd01513 Translation_factor_III Domain III of Elongation factor (EF) Tu (EF-TU) and EF-G. Elongation factors (EF) EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Experimental data showed that: (1) intrinsic GTPase activity of EF-G is influenced by excision of its domain III; (2) that EF-G lacking domain III has a 1,000-fold decreased GTPase activity on the ribosome and, a slightly decreased affinity for GTP; and (3) EF-G lacking domain III does not stimulate translocation, despite the physical presence of domain IV which is also very important for translocation. These findings indicate an essential contribution of domain III to activation of GTP hydrolysis. Domains III and V of EF-G have the s
Probab=99.89 E-value=1e-22 Score=154.94 Aligned_cols=99 Identities=27% Similarity=0.364 Sum_probs=91.7
Q ss_pred CcceEEEEEEeCCCccCcCCCCeEEEEEecceEEEEEEEeeeecccCccceeccCCcccCCCCeeEEEEEeCceEEeeec
Q psy15204 113 PSRSVKLVKLSNVYQVGFIKELKVGMHQQSLAESAVITRLLSQVHKTSGEVIRKKPRALTKSMSAQVVIETVRPMCVELY 192 (232)
Q Consensus 113 as~~a~Iv~L~~e~~~PI~~Gy~p~Lh~~T~~v~~rI~kI~~kIDk~Tg~~~kk~pk~Lk~GD~A~V~I~l~kPI~vE~f 192 (232)
..|+++++||+ ++.||.+||+|++|++|.+++|+|..|.+++|.++.. ++++++|++||.|.|+|++++|+|+|+|
T Consensus 4 ~~f~a~i~~l~--~~~pl~~g~~~~l~~~t~~~~~~i~~i~~~~d~~~~~--~~~~~~l~~~~~a~v~l~~~~pi~~e~~ 79 (102)
T cd01513 4 DKFVAEIYVLD--HPEPLSPGYKPVLNVGTAHVPGRIAKLLSKVDGKTEE--KKPPEFLKSGERGIVEVELQKPVALETF 79 (102)
T ss_pred cEEEEEEEEEC--CCcccCCCCcEEEEeecCEEeEEEEeeeeecccCccc--ccCchhhcCCCEEEEEEEECCceEEEEh
Confidence 35789999994 6889999999999999999999999999999998533 5678999999999999999999999999
Q ss_pred cCCCceeeEEEEECCCeEEEEEE
Q psy15204 193 RDVKELGRFMLRVSGVTIAAGLI 215 (232)
Q Consensus 193 s~~p~LGRFiLRD~g~TVAaGiI 215 (232)
++++.+|||+|||+++|||+|+|
T Consensus 80 ~~~~~~grfilr~~~~tvg~G~V 102 (102)
T cd01513 80 SENQEGGRFALRDGGRTVGAGLI 102 (102)
T ss_pred hhCCCcccEEEEeCCCEEEEEEC
Confidence 99999999999999999999986
No 16
>PLN03126 Elongation factor Tu; Provisional
Probab=99.89 E-value=2.8e-22 Score=193.04 Aligned_cols=160 Identities=16% Similarity=0.191 Sum_probs=135.5
Q ss_pred eeeeeecCCeEEEEecC--ceeeeccccccc-ccccccCC-CCcccccCcccCCCCccccccCCCCCCCCCCCCCCCCcc
Q psy15204 17 WICLFIIPKLTIIISDA--NVKTDVSSNPSA-SAADQSFP-DTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPSTP 92 (232)
Q Consensus 17 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (232)
=+.+.+++||.|.|.|. +.++.|+|+++| ..++++.| |++|++++++.. .-
T Consensus 311 V~sG~i~~Gd~v~i~p~~~~~~~~VksI~~~~~~v~~A~aG~~v~l~L~~i~~-------------------------~d 365 (478)
T PLN03126 311 VERGTVKVGETVDIVGLRETRSTTVTGVEMFQKILDEALAGDNVGLLLRGIQK-------------------------AD 365 (478)
T ss_pred EEcCeEecCCEEEEecCCCceEEEEEEEEECCeECCEEeCCceeeeeccCCcH-------------------------HH
Confidence 35788999999999986 468999999997 69999999 999999987621 13
Q ss_pred cccccccccCCccCCCCCCCCcceEEEEEEeCC---CccCcCCCCeEEEEEecceEEEEEEEeeeecccCccceeccCCc
Q psy15204 93 VSRSRSPATPTCTSPTPDQEPSRSVKLVKLSNV---YQVGFIKELKVGMHQQSLAESAVITRLLSQVHKTSGEVIRKKPR 169 (232)
Q Consensus 93 v~rg~v~a~p~~~~~~p~~~as~~a~Iv~L~~e---~~~PI~~Gy~p~Lh~~T~~v~~rI~kI~~kIDk~Tg~~~kk~pk 169 (232)
++||+||+.|+. +.....|+++++||+.. ++.||.+||++++|+||.+++|+|.+|....| ++++
T Consensus 366 i~rG~VL~~~~~----~~~~~~F~A~i~vL~~~~gg~~~~I~~G~~~~lhigt~~~~~~I~~i~~~~~--------~~~~ 433 (478)
T PLN03126 366 IQRGMVLAKPGS----ITPHTKFEAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTSIMNDKD--------EESK 433 (478)
T ss_pred cCCccEEecCCC----CCceEEEEEEEEEecccccCCcccccCCcEEEEEEEecEEEEEEEEEecccC--------CCcc
Confidence 679999999863 22235689999999621 24799999999999999999999999976444 3578
Q ss_pred ccCCCCeeEEEEEeCceEEeeeccCCCceeeEEEEECCCeEEEEEEEEee
Q psy15204 170 ALTKSMSAQVVIETVRPMCVELYRDVKELGRFMLRVSGVTIAAGLITKVI 219 (232)
Q Consensus 170 ~Lk~GD~A~V~I~l~kPI~vE~fs~~p~LGRFiLRD~g~TVAaGiI~~V~ 219 (232)
+|++||.|.|+|++.+|+|+|. +|||+|||+|+|||+|+|+++.
T Consensus 434 ~l~~gd~a~v~l~~~~Pi~~~~------~~RfilR~~~~Tva~G~V~~v~ 477 (478)
T PLN03126 434 MVMPGDRVKMVVELIVPVACEQ------GMRFAIREGGKTVGAGVIQSII 477 (478)
T ss_pred EeCCCCEEEEEEEECCeEEEcc------CCEEEEecCCceEEEEEEEEec
Confidence 9999999999999999999997 4699999999999999999875
No 17
>PRK00049 elongation factor Tu; Reviewed
Probab=99.88 E-value=3.7e-22 Score=187.04 Aligned_cols=154 Identities=20% Similarity=0.218 Sum_probs=130.4
Q ss_pred eeeeecCCeEEEEecC--ceeeeccccccc-ccccccCC-CCcccccCcccCCCCccccccCCCCCCCCCCCCCCCCccc
Q psy15204 18 ICLFIIPKLTIIISDA--NVKTDVSSNPSA-SAADQSFP-DTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPSTPV 93 (232)
Q Consensus 18 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 93 (232)
+.+.+++||.|.|.|. +.++.|+|+++| +.++++.| |++|++++++.. + -+
T Consensus 235 ~~G~i~~gd~v~i~p~~~~~~~~VksI~~~~~~~~~a~~Gd~v~l~l~~i~~------~-------------------~i 289 (396)
T PRK00049 235 ERGIIKVGEEVEIVGIRDTQKTTVTGVEMFRKLLDEGQAGDNVGALLRGIKR------E-------------------DV 289 (396)
T ss_pred eeeEEecCCEEEEeecCCCceEEEEEEEECCcEeCEEcCCCEEEEEeCCCCH------H-------------------HC
Confidence 5688999999999876 799999999997 69999999 999999987631 1 26
Q ss_pred ccccccccCCccCCCCCCCCcceEEEEEEeCC---CccCcCCCCeEEEEEecceEEEEEEEeeeecccCccceeccCCcc
Q psy15204 94 SRSRSPATPTCTSPTPDQEPSRSVKLVKLSNV---YQVGFIKELKVGMHQQSLAESAVITRLLSQVHKTSGEVIRKKPRA 170 (232)
Q Consensus 94 ~rg~v~a~p~~~~~~p~~~as~~a~Iv~L~~e---~~~PI~~Gy~p~Lh~~T~~v~~rI~kI~~kIDk~Tg~~~kk~pk~ 170 (232)
+||+|++.|+.. .....|+++|++|... .+++|..||++++|+||.++.|+|. + .+++++
T Consensus 290 ~~G~vl~~~~~~----~~~~~f~a~i~vl~~~~~g~~~~i~~g~~~~~~~~t~~~~~~i~-l------------~~~~~~ 352 (396)
T PRK00049 290 ERGQVLAKPGSI----TPHTKFEAEVYVLSKEEGGRHTPFFNGYRPQFYFRTTDVTGVIE-L------------PEGVEM 352 (396)
T ss_pred CcceEEecCCCC----CcceEEEEEEEEEecCcCCCCCcccCCCEEEEEEecCcEEEEEE-e------------cCCCcc
Confidence 789999998732 2235578999999521 1689999999999999999999983 2 245789
Q ss_pred cCCCCeeEEEEEeCceEEeeeccCCCceeeEEEEECCCeEEEEEEEEee
Q psy15204 171 LTKSMSAQVVIETVRPMCVELYRDVKELGRFMLRVSGVTIAAGLITKVI 219 (232)
Q Consensus 171 Lk~GD~A~V~I~l~kPI~vE~fs~~p~LGRFiLRD~g~TVAaGiI~~V~ 219 (232)
|++||.|.|+|++.+|+|+|++ |||+|||+|+|+|+|+|+++.
T Consensus 353 l~~g~~a~v~i~~~~p~~~e~~------~RfilR~~g~t~~~G~V~~v~ 395 (396)
T PRK00049 353 VMPGDNVEMTVELIAPIAMEEG------LRFAIREGGRTVGAGVVTKII 395 (396)
T ss_pred cCCCCEEEEEEEECceEEEeeC------CEEEEecCCcEEEEEEEEEec
Confidence 9999999999999999999996 599999999999999999876
No 18
>CHL00071 tufA elongation factor Tu
Probab=99.88 E-value=7.2e-22 Score=185.63 Aligned_cols=160 Identities=16% Similarity=0.186 Sum_probs=134.9
Q ss_pred eeeeecCCeEEEEec--Cceeeeccccccc-ccccccCC-CCcccccCcccCCCCccccccCCCCCCCCCCCCCCCCccc
Q psy15204 18 ICLFIIPKLTIIISD--ANVKTDVSSNPSA-SAADQSFP-DTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPSTPV 93 (232)
Q Consensus 18 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 93 (232)
+.+.+++|+.|.|.| .+..+.|+|+++| +.++++.| |++|++++++.. .-|
T Consensus 243 ~sG~l~~Gd~v~i~p~~~~~~~~VksI~~~~~~v~~a~aGd~v~i~l~~i~~-------------------------~~i 297 (409)
T CHL00071 243 ERGTVKVGDTVEIVGLRETKTTTVTGLEMFQKTLDEGLAGDNVGILLRGIQK-------------------------EDI 297 (409)
T ss_pred ecCEEeeCCEEEEeeCCCCcEEEEEEEEEcCcCCCEECCCceeEEEEcCCCH-------------------------HHc
Confidence 467899999999876 4678999999997 69999999 999999987621 126
Q ss_pred ccccccccCCccCCCCCCCCcceEEEEEEeCC---CccCcCCCCeEEEEEecceEEEEEEEeeeecccCccceeccCCcc
Q psy15204 94 SRSRSPATPTCTSPTPDQEPSRSVKLVKLSNV---YQVGFIKELKVGMHQQSLAESAVITRLLSQVHKTSGEVIRKKPRA 170 (232)
Q Consensus 94 ~rg~v~a~p~~~~~~p~~~as~~a~Iv~L~~e---~~~PI~~Gy~p~Lh~~T~~v~~rI~kI~~kIDk~Tg~~~kk~pk~ 170 (232)
+||++|+.|+. +.....|+++|.||+.. +++||.+||+|++|+|+.+++|+|+.|... | .++|++
T Consensus 298 ~~G~vl~~~~~----~~~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~gt~~~~~~i~~i~~~-~-------~~~~~~ 365 (409)
T CHL00071 298 ERGMVLAKPGT----ITPHTKFEAQVYILTKEEGGRHTPFFPGYRPQFYVRTTDVTGKIESFTAD-D-------GSKTEM 365 (409)
T ss_pred CCeEEEecCCC----CCcceEEEEEEEEEecccCCccccccCCceEEEEEcccEEEEEEEEEccc-C-------CCCCcE
Confidence 79999999873 22345688999999621 268999999999999999999999998653 2 156889
Q ss_pred cCCCCeeEEEEEeCceEEeeeccCCCceeeEEEEECCCeEEEEEEEEeee
Q psy15204 171 LTKSMSAQVVIETVRPMCVELYRDVKELGRFMLRVSGVTIAAGLITKVIF 220 (232)
Q Consensus 171 Lk~GD~A~V~I~l~kPI~vE~fs~~p~LGRFiLRD~g~TVAaGiI~~V~~ 220 (232)
|++||.|.|+|++.+|+|+|++ |||+|||+|+|+|+|+|+++++
T Consensus 366 l~~g~~a~v~l~~~~pi~~e~~------~rfilR~~~~tig~G~V~~~~~ 409 (409)
T CHL00071 366 VMPGDRIKMTVELIYPIAIEKG------MRFAIREGGRTVGAGVVSKILK 409 (409)
T ss_pred ecCCCEEEEEEEECCeEEEeeC------CEEEEecCCeEEEEEEEEEecC
Confidence 9999999999999999999996 6999999999999999998863
No 19
>PF03143 GTP_EFTU_D3: Elongation factor Tu C-terminal domain; InterPro: IPR004160 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents the C-terminal domain, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA and to EF1B (or EF-Ts, IPR001816 from INTERPRO) []. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1TUI_C 1OB5_E 1TTT_B 1B23_P 1EFT_A 3E20_E 1R5B_A 1R5O_A 1R5N_A 3AGJ_C ....
Probab=99.88 E-value=5.4e-22 Score=153.55 Aligned_cols=93 Identities=29% Similarity=0.459 Sum_probs=83.5
Q ss_pred cceEEEEEEeCCCccCcCCCCeEEEEEecceEEEEEEEeeeecccCccceeccCCcccCCCCeeEEEEEeCceEEeeecc
Q psy15204 114 SRSVKLVKLSNVYQVGFIKELKVGMHQQSLAESAVITRLLSQVHKTSGEVIRKKPRALTKSMSAQVVIETVRPMCVELYR 193 (232)
Q Consensus 114 s~~a~Iv~L~~e~~~PI~~Gy~p~Lh~~T~~v~~rI~kI~~kIDk~Tg~~~kk~pk~Lk~GD~A~V~I~l~kPI~vE~fs 193 (232)
.|.|++++| +++.||.+||+++||+|+.+++|++.+|.+++| +|+.. |++|++||.|.|+|++++|+|+|.|+
T Consensus 7 ~f~A~v~vl--~~~~~i~~Gy~~~~~~~t~~~~~~i~~i~~~~~--~~~~~---p~~l~~g~~a~v~l~~~~pi~ve~~~ 79 (99)
T PF03143_consen 7 RFEAQVIVL--DHPKPISPGYQPVLHIHTADVPCRIVKIISKID--TGKKK---PKFLKPGDRAVVELEFQKPICVEPFS 79 (99)
T ss_dssp EEEEEEEES--SGSS-BETTEEEEEEETTEEEEEEEEEEEEEES--TTTEE----SEB-TTEEEEEEEEEEEEEEETTTT
T ss_pred EEEEEEEEE--cCCccccCCCccceEEeeceeeEEEEeeeeccc--ccccc---ccccccccccccceeeccceeeecCc
Confidence 578999999 579999999999999999999999999999999 55543 99999999999999999999999999
Q ss_pred CCCceeeEEEEECCCeEEEEEEEEee
Q psy15204 194 DVKELGRFMLRVSGVTIAAGLITKVI 219 (232)
Q Consensus 194 ~~p~LGRFiLRD~g~TVAaGiI~~V~ 219 (232)
||+|||+|+|||+|+|+++.
T Consensus 80 ------Rf~lR~~~~Tia~G~V~~vi 99 (99)
T PF03143_consen 80 ------RFILRDGGKTIAVGVVTKVI 99 (99)
T ss_dssp ------EEEEEETTEEEEEEEEEEE-
T ss_pred ------eEEEccCCeEEEEEEEEEeC
Confidence 99999999999999999873
No 20
>PLN03127 Elongation factor Tu; Provisional
Probab=99.87 E-value=9.6e-22 Score=187.71 Aligned_cols=154 Identities=18% Similarity=0.183 Sum_probs=130.2
Q ss_pred eeeeecCCeEEEEecC----ceeeeccccccc-ccccccCC-CCcccccCcccCCCCccccccCCCCCCCCCCCCCCCCc
Q psy15204 18 ICLFIIPKLTIIISDA----NVKTDVSSNPSA-SAADQSFP-DTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPST 91 (232)
Q Consensus 18 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (232)
+.+.+++||.|.+.|. +.++.|+|+++| +.++++.| ||+|++++++.. .
T Consensus 284 ~~G~i~~Gd~v~i~p~~~~g~~~~~VksI~~~~~~v~~a~aGd~v~l~L~~i~~-------------------------~ 338 (447)
T PLN03127 284 EQGTIKVGEEVEIVGLRPGGPLKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKR-------------------------E 338 (447)
T ss_pred EccEEecCCEEEEcccCCCCcEEEEEEEEEEECcEeCEEcCCCEEEEEeCCCCH-------------------------H
Confidence 4678999999988864 789999999997 69999999 999999987621 1
Q ss_pred ccccccccccCCccCCCCCCCCcceEEEEEEeCC---CccCcCCCCeEEEEEecceEEEEEEEeeeecccCccceeccCC
Q psy15204 92 PVSRSRSPATPTCTSPTPDQEPSRSVKLVKLSNV---YQVGFIKELKVGMHQQSLAESAVITRLLSQVHKTSGEVIRKKP 168 (232)
Q Consensus 92 ~v~rg~v~a~p~~~~~~p~~~as~~a~Iv~L~~e---~~~PI~~Gy~p~Lh~~T~~v~~rI~kI~~kIDk~Tg~~~kk~p 168 (232)
.|+|||||+.|+. +.....|+++|++|... ++++|..||++++|+||.++.|+|.. .+++
T Consensus 339 ~i~rG~Vl~~~~~----~~~~~~F~A~i~vl~~~~gg~~~~i~~g~~~~~~~~t~~~~~~i~~-------------~~~~ 401 (447)
T PLN03127 339 DVQRGQVICKPGS----IKTYKKFEAEIYVLTKDEGGRHTPFFSNYRPQFYLRTADVTGKVEL-------------PEGV 401 (447)
T ss_pred HCCCccEEecCCC----CceeEEEEEEEEEEcccccccCcccccCceeEEEeeecceeEEEEe-------------ccCc
Confidence 3689999999853 22345578899999521 25899999999999999999999853 2457
Q ss_pred cccCCCCeeEEEEEeCceEEeeeccCCCceeeEEEEECCCeEEEEEEEEee
Q psy15204 169 RALTKSMSAQVVIETVRPMCVELYRDVKELGRFMLRVSGVTIAAGLITKVI 219 (232)
Q Consensus 169 k~Lk~GD~A~V~I~l~kPI~vE~fs~~p~LGRFiLRD~g~TVAaGiI~~V~ 219 (232)
++|++||.+.|+|++.+|+|+|.+ |||+|||+|+|||+|+|+++.
T Consensus 402 ~~l~~gd~a~v~l~~~~p~~le~g------~RfilR~~g~Tvg~G~V~~v~ 446 (447)
T PLN03127 402 KMVMPGDNVTAVFELISPVPLEPG------QRFALREGGRTVGAGVVSKVL 446 (447)
T ss_pred cccCCCCEEEEEEEECceEEEeeC------CEEEEEeCCcEEEEEEEEEec
Confidence 899999999999999999999986 699999999999999999875
No 21
>PRK12735 elongation factor Tu; Reviewed
Probab=99.87 E-value=1.3e-21 Score=183.26 Aligned_cols=154 Identities=18% Similarity=0.190 Sum_probs=130.3
Q ss_pred eeeeecCCeEEEEecC--ceeeeccccccc-ccccccCC-CCcccccCcccCCCCccccccCCCCCCCCCCCCCCCCccc
Q psy15204 18 ICLFIIPKLTIIISDA--NVKTDVSSNPSA-SAADQSFP-DTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPSTPV 93 (232)
Q Consensus 18 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 93 (232)
+.+.+++|++|.+-|. +.++.|+|+++| +..+++.| |++|++++++.. .-|
T Consensus 235 ~~G~i~~gd~v~i~p~~~~~~~~VksI~~~~~~v~~a~aGd~v~l~L~~i~~-------------------------~~i 289 (396)
T PRK12735 235 ERGIVKVGDEVEIVGIKETQKTTVTGVEMFRKLLDEGQAGDNVGVLLRGTKR-------------------------EDV 289 (396)
T ss_pred EecEEeCCCEEEEecCCCCeEEEEEEEEECCeEeCEECCCCEEEEEeCCCcH-------------------------HHC
Confidence 4678999999999986 578999999998 69999999 999999987631 126
Q ss_pred ccccccccCCccCCCCCCCCcceEEEEEEeCC---CccCcCCCCeEEEEEecceEEEEEEEeeeecccCccceeccCCcc
Q psy15204 94 SRSRSPATPTCTSPTPDQEPSRSVKLVKLSNV---YQVGFIKELKVGMHQQSLAESAVITRLLSQVHKTSGEVIRKKPRA 170 (232)
Q Consensus 94 ~rg~v~a~p~~~~~~p~~~as~~a~Iv~L~~e---~~~PI~~Gy~p~Lh~~T~~v~~rI~kI~~kIDk~Tg~~~kk~pk~ 170 (232)
+||+||+.|+.. .....|+++|++|+.. ++++|..||++++|+||.++.|+|... +++++
T Consensus 290 ~rG~vl~~~~~~----~~~~~f~a~i~vl~~~~~~~~~~i~~g~~~~l~~~t~~~~~~i~~~-------------~~~~~ 352 (396)
T PRK12735 290 ERGQVLAKPGSI----KPHTKFEAEVYVLSKEEGGRHTPFFNGYRPQFYFRTTDVTGTIELP-------------EGVEM 352 (396)
T ss_pred CcceEEEcCCCC----CcceEEEEEEEEEecccCCCCCcccCCCeeEEEeccceEEEEEEcc-------------CCCce
Confidence 799999998732 2235578999999521 158999999999999999999998531 35789
Q ss_pred cCCCCeeEEEEEeCceEEeeeccCCCceeeEEEEECCCeEEEEEEEEee
Q psy15204 171 LTKSMSAQVVIETVRPMCVELYRDVKELGRFMLRVSGVTIAAGLITKVI 219 (232)
Q Consensus 171 Lk~GD~A~V~I~l~kPI~vE~fs~~p~LGRFiLRD~g~TVAaGiI~~V~ 219 (232)
|++||.|.|+|++.+|+|+|.+ |||+|||+|+|+|+|+|+++.
T Consensus 353 l~~g~~a~v~l~~~~p~~~~~~------~rfilR~~g~tv~~G~V~~v~ 395 (396)
T PRK12735 353 VMPGDNVKMTVELIAPIAMEEG------LRFAIREGGRTVGAGVVAKII 395 (396)
T ss_pred eCCCCEEEEEEEECceEEEeEC------CEEEEEcCCcEEEEEEEEEec
Confidence 9999999999999999999996 699999999999999999875
No 22
>PRK12736 elongation factor Tu; Reviewed
Probab=99.87 E-value=2.3e-21 Score=181.48 Aligned_cols=154 Identities=16% Similarity=0.171 Sum_probs=130.6
Q ss_pred eeeeecCCeEEEEecC--ceeeeccccccc-ccccccCC-CCcccccCcccCCCCccccccCCCCCCCCCCCCCCCCccc
Q psy15204 18 ICLFIIPKLTIIISDA--NVKTDVSSNPSA-SAADQSFP-DTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPSTPV 93 (232)
Q Consensus 18 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 93 (232)
+.+.+++|+.|.+-|. +.++.|+|+++| ++.+++.| |++|++++++.. .-+
T Consensus 233 ~~G~l~~gd~v~i~p~~~~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~-------------------------~~i 287 (394)
T PRK12736 233 ERGTVKVGDEVEIVGIKETQKTVVTGVEMFRKLLDEGQAGDNVGVLLRGVDR-------------------------DEV 287 (394)
T ss_pred eecEEecCCEEEEecCCCCeEEEEEEEEECCEEccEECCCCEEEEEECCCcH-------------------------HhC
Confidence 4688999999999887 788999999997 69999999 999999987631 126
Q ss_pred ccccccccCCccCCCCCCCCcceEEEEEEeCC---CccCcCCCCeEEEEEecceEEEEEEEeeeecccCccceeccCCcc
Q psy15204 94 SRSRSPATPTCTSPTPDQEPSRSVKLVKLSNV---YQVGFIKELKVGMHQQSLAESAVITRLLSQVHKTSGEVIRKKPRA 170 (232)
Q Consensus 94 ~rg~v~a~p~~~~~~p~~~as~~a~Iv~L~~e---~~~PI~~Gy~p~Lh~~T~~v~~rI~kI~~kIDk~Tg~~~kk~pk~ 170 (232)
+||+||+.|+... ....|++++++|+.. ++++|..||++++|+||.++.|+|.. .+++++
T Consensus 288 ~~G~vl~~~~~~~----~~~~f~a~i~vl~~~~~~~~~~i~~g~~~~l~~~t~~~~~~i~~-------------~~~~~~ 350 (394)
T PRK12736 288 ERGQVLAKPGSIK----PHTKFKAEVYILTKEEGGRHTPFFNNYRPQFYFRTTDVTGSIEL-------------PEGTEM 350 (394)
T ss_pred CcceEEecCCCCC----cceEEEEEEEEEecccCCCCCcccCCceEEEEEccCeEEEEEEe-------------cCCcce
Confidence 7899999987322 235688999999521 15899999999999999999999853 235789
Q ss_pred cCCCCeeEEEEEeCceEEeeeccCCCceeeEEEEECCCeEEEEEEEEee
Q psy15204 171 LTKSMSAQVVIETVRPMCVELYRDVKELGRFMLRVSGVTIAAGLITKVI 219 (232)
Q Consensus 171 Lk~GD~A~V~I~l~kPI~vE~fs~~p~LGRFiLRD~g~TVAaGiI~~V~ 219 (232)
|++||.+.|+|++.+|+|+|.+ +||+|||+|+|+|+|+|+++.
T Consensus 351 l~~g~~a~v~l~~~~p~~~~~~------~rfilR~~g~tv~~G~V~~v~ 393 (394)
T PRK12736 351 VMPGDNVTITVELIHPIAMEQG------LKFAIREGGRTVGAGTVTEIL 393 (394)
T ss_pred eCCCCEEEEEEEECceEEEeeC------CEEEEecCCcEEEEEEEEEee
Confidence 9999999999999999999997 499999999999999999875
No 23
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.86 E-value=6.4e-21 Score=178.09 Aligned_cols=154 Identities=17% Similarity=0.190 Sum_probs=130.3
Q ss_pred eeeeecCCeEEEEec--Cceeeeccccccc-ccccccCC-CCcccccCcccCCCCccccccCCCCCCCCCCCCCCCCccc
Q psy15204 18 ICLFIIPKLTIIISD--ANVKTDVSSNPSA-SAADQSFP-DTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPSTPV 93 (232)
Q Consensus 18 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 93 (232)
+.+.+++|++|.+.| .+.++.|+|+++| ..++++.| |++|++++++.. .-|
T Consensus 233 ~~G~l~~gd~v~i~p~~~~~~~~VksI~~~~~~~~~a~aGd~v~l~l~~i~~-------------------------~~i 287 (394)
T TIGR00485 233 ERGIVKVGEEVEIVGLKDTRKTTVTGVEMFRKELDEGRAGDNVGLLLRGIKR-------------------------EEI 287 (394)
T ss_pred EeeEEeCCCEEEEecCCCCcEEEEEEEEECCeEEEEECCCCEEEEEeCCccH-------------------------HHC
Confidence 468899999999988 4788999999998 68999999 999999877621 126
Q ss_pred ccccccccCCccCCCCCCCCcceEEEEEEeCC---CccCcCCCCeEEEEEecceEEEEEEEeeeecccCccceeccCCcc
Q psy15204 94 SRSRSPATPTCTSPTPDQEPSRSVKLVKLSNV---YQVGFIKELKVGMHQQSLAESAVITRLLSQVHKTSGEVIRKKPRA 170 (232)
Q Consensus 94 ~rg~v~a~p~~~~~~p~~~as~~a~Iv~L~~e---~~~PI~~Gy~p~Lh~~T~~v~~rI~kI~~kIDk~Tg~~~kk~pk~ 170 (232)
+||+|++.|+. +.....|+++|+||+.. ++++|..||++++|++|.++.|+|..+ +++++
T Consensus 288 ~rG~vl~~~~~----~~~~~~f~a~i~vl~~~~g~~~~~i~~g~~~~l~~~t~~~~~~i~~~-------------~~~~~ 350 (394)
T TIGR00485 288 ERGMVLAKPGS----IKPHTKFEAEVYVLKKEEGGRHTPFFSGYRPQFYFRTTDVTGSITLP-------------EGVEM 350 (394)
T ss_pred CccEEEecCCC----CCcceEEEEEEEEEecCCCCCCCccccCceEEEEEecceEEEEEEec-------------CCcce
Confidence 78999999853 22235689999999621 158999999999999999999999742 35788
Q ss_pred cCCCCeeEEEEEeCceEEeeeccCCCceeeEEEEECCCeEEEEEEEEee
Q psy15204 171 LTKSMSAQVVIETVRPMCVELYRDVKELGRFMLRVSGVTIAAGLITKVI 219 (232)
Q Consensus 171 Lk~GD~A~V~I~l~kPI~vE~fs~~p~LGRFiLRD~g~TVAaGiI~~V~ 219 (232)
|++||.|.|+|++++|+|+|++ +||+|||+|+|+|+|+|+++.
T Consensus 351 l~~g~~a~v~~~~~~p~~~~~~------~rfilR~~g~tv~~G~V~~v~ 393 (394)
T TIGR00485 351 VMPGDNVKMTVELISPIALEQG------MRFAIREGGRTVGAGVVSKII 393 (394)
T ss_pred eCCCCEEEEEEEECceEEEeEC------CEEEEecCCcEEEEEEEEEec
Confidence 9999999999999999999997 599999999999999999886
No 24
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=3.3e-21 Score=176.85 Aligned_cols=155 Identities=21% Similarity=0.231 Sum_probs=133.7
Q ss_pred eeeeeecCCeEEEEec--Cceeeeccccccc-ccccccCC-CCcccccCcccCCCCccccccCCCCCCCCCCCCCCCCcc
Q psy15204 17 WICLFIIPKLTIIISD--ANVKTDVSSNPSA-SAADQSFP-DTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPSTP 92 (232)
Q Consensus 17 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (232)
-+++.+|.|+.|-+-- ..-+|-|..++|. .-|||... ||+||-.+.+. . ..
T Consensus 232 VeRG~lkvg~eveivG~~~~~kttvtgvemfrk~ld~~~AGdnvg~llRg~~---------r----------------~~ 286 (394)
T COG0050 232 VERGILKVGEEVEIVGIKETQKTTVTGVEMFRKLLDEGQAGDNVGVLLRGVK---------R----------------ED 286 (394)
T ss_pred EeeeeeccCCEEEEecccccceeEEEhHHHHHHHHhccccCCCcceEEEecc---------c----------------cc
Confidence 4678899999887643 3567889999997 79999999 99999988872 1 13
Q ss_pred cccccccccCCccCCCCCCCCcceEEEEEEeC---CCccCcCCCCeEEEEEecceEEEEEEEeeeecccCccceeccCCc
Q psy15204 93 VSRSRSPATPTCTSPTPDQEPSRSVKLVKLSN---VYQVGFIKELKVGMHQQSLAESAVITRLLSQVHKTSGEVIRKKPR 169 (232)
Q Consensus 93 v~rg~v~a~p~~~~~~p~~~as~~a~Iv~L~~---e~~~PI~~Gy~p~Lh~~T~~v~~rI~kI~~kIDk~Tg~~~kk~pk 169 (232)
|.||||||+||++++|.+|+++ +|+|.+ .+++||..||+|+|+++|.++++.++. .+..+
T Consensus 287 veRGqvLakpgsi~ph~kfeae----vyvL~keeggrhtpff~~yrpqfyfRttDVtg~i~l-------------~eg~e 349 (394)
T COG0050 287 VERGQVLAKPGSIKPHTKFEAE----VYVLSKEEGGRHTPFFHGYRPQFYFRTTDVTGAITL-------------PEGVE 349 (394)
T ss_pred eecceEeecCCcccccceeeEE----EEEEecccCCCCCCcccCccceeEEEeeeeeeeEec-------------cCCcc
Confidence 7899999999999999999987 455554 389999999999999999999996653 23568
Q ss_pred ccCCCCeeEEEEEeCceEEeeeccCCCceeeEEEEECCCeEEEEEEEEee
Q psy15204 170 ALTKSMSAQVVIETVRPMCVELYRDVKELGRFMLRVSGVTIAAGLITKVI 219 (232)
Q Consensus 170 ~Lk~GD~A~V~I~l~kPI~vE~fs~~p~LGRFiLRD~g~TVAaGiI~~V~ 219 (232)
++++||++.+.+++.+||++|... ||.+|++|+|||+|+|.++.
T Consensus 350 mvmpgdnv~~~veLi~pia~e~G~------rFaIreGgrtvgaGvV~~i~ 393 (394)
T COG0050 350 MVMPGDNVKMVVELIHPIAMEEGL------RFAIREGGRTVGAGVVTKII 393 (394)
T ss_pred eecCCCceEEEEEEeeeeecCCCC------EEEEEeCCeeeeeeEEeeec
Confidence 999999999999999999999998 99999999999999999885
No 25
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.85 E-value=5e-21 Score=178.70 Aligned_cols=170 Identities=12% Similarity=0.149 Sum_probs=144.3
Q ss_pred eeeeecCCeEEEEecCceeeeccccccc-ccccccCC-CCcccccCcccCCCCccccccCCCCCCCCCCCCCCCCccccc
Q psy15204 18 ICLFIIPKLTIIISDANVKTDVSSNPSA-SAADQSFP-DTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPSTPVSR 95 (232)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r 95 (232)
.++.+++|+.|.+-|++.++.|++|..+ ..+.||++ +.++.-+..= --|+|
T Consensus 246 asG~v~~Gd~vvvlPsG~~s~V~~Ivt~dg~~~~A~aG~aVtl~L~de---------------------------idisR 298 (431)
T COG2895 246 ASGSVKVGDEVVVLPSGKTSRVKRIVTFDGELAQASAGEAVTLVLADE---------------------------IDISR 298 (431)
T ss_pred eccceecCCeEEEccCCCeeeEEEEeccCCchhhccCCceEEEEEcce---------------------------eeccc
Confidence 4688999999999999999999999997 68888887 5554433221 23567
Q ss_pred ccccccCCccCCCCCCCCcceEEEEEEeCCCccCcCCCCeEEEEEecceEEEEEEEeeeecccCccceeccCCcccCCCC
Q psy15204 96 SRSPATPTCTSPTPDQEPSRSVKLVKLSNVYQVGFIKELKVGMHQQSLAESAVITRLLSQVHKTSGEVIRKKPRALTKSM 175 (232)
Q Consensus 96 g~v~a~p~~~~~~p~~~as~~a~Iv~L~~e~~~PI~~Gy~p~Lh~~T~~v~~rI~kI~~kIDk~Tg~~~kk~pk~Lk~GD 175 (232)
|.+++.+.. .|....+|.++++||+ +.|+.+|.+|.+++.|..+.++|..|.+++|.+|++. ...+.|..|+
T Consensus 299 Gd~i~~~~~---~~~~~~~f~A~vvWm~---~~pl~pGr~Y~lK~~t~~v~a~V~~i~~~ldvntl~~--~~a~~l~lN~ 370 (431)
T COG2895 299 GDLIVAADA---PPAVADAFDADVVWMD---EEPLLPGRSYDLKIATRTVRARVEEIKHQLDVNTLEQ--EGAESLPLNE 370 (431)
T ss_pred CcEEEccCC---CcchhhhcceeEEEec---CCCCCCCceEEEEecceEEEEEeeeeEEEEecccccc--ccccccCCCc
Confidence 777776543 2333445789999997 7799999999999999999999999999999999986 4789999999
Q ss_pred eeEEEEEeCceEEeeeccCCCceeeEEEEEC--CCeEEEEEEEEeeecc
Q psy15204 176 SAQVVIETVRPMCVELYRDVKELGRFMLRVS--GVTIAAGLITKVIFDQ 222 (232)
Q Consensus 176 ~A~V~I~l~kPI~vE~fs~~p~LGRFiLRD~--g~TVAaGiI~~V~~k~ 222 (232)
++.|.|.+++|+++|.|.+|+.+|+|+|+|. |.|||+|+|.+-+...
T Consensus 371 Ig~v~i~~~~pi~fd~Y~~N~atG~FIlID~~tn~TVgaGmI~~~l~~~ 419 (431)
T COG2895 371 IGRVRISFDKPIAFDAYAENRATGSFILIDRLTNGTVGAGMILASLSAN 419 (431)
T ss_pred ceEEEEecCCceeecccccCcccccEEEEEcCCCCceeceeeechhhhc
Confidence 9999999999999999999999999999997 8899999998766433
No 26
>KOG0460|consensus
Probab=99.84 E-value=2.1e-21 Score=180.70 Aligned_cols=156 Identities=21% Similarity=0.227 Sum_probs=136.9
Q ss_pred eeeeeecCCeEEEEec--Cceeeeccccccc-ccccccCC-CCcccccCcccCCCCccccccCCCCCCCCCCCCCCCCcc
Q psy15204 17 WICLFIIPKLTIIISD--ANVKTDVSSNPSA-SAADQSFP-DTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPSTP 92 (232)
Q Consensus 17 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (232)
-+.+.+|-|+.+-|-- .++++-|+-+||. ..++|+.+ ||.|--++++- + ..
T Consensus 276 lERG~lKkG~e~eivG~~~~lkttvtgiemF~K~ld~a~AGDn~G~LlRGik--------------------~-----~d 330 (449)
T KOG0460|consen 276 LERGVLKKGDEVEIVGHNKTLKTTVTGIEMFRKSLDEAQAGDNLGALLRGIK--------------------R-----ED 330 (449)
T ss_pred EeecccccCCEEEEeccCcceeeEeehHHHHHHHHHhcccccceehhhhcCC--------------------H-----HH
Confidence 3567899999988753 4689999999995 79999999 99998888872 1 24
Q ss_pred cccccccccCCccCCCCCCCCcceEEEEEEeC---CCccCcCCCCeEEEEEecceEEEEEEEeeeecccCccceeccCCc
Q psy15204 93 VSRSRSPATPTCTSPTPDQEPSRSVKLVKLSN---VYQVGFIKELKVGMHQQSLAESAVITRLLSQVHKTSGEVIRKKPR 169 (232)
Q Consensus 93 v~rg~v~a~p~~~~~~p~~~as~~a~Iv~L~~---e~~~PI~~Gy~p~Lh~~T~~v~~rI~kI~~kIDk~Tg~~~kk~pk 169 (232)
|+||||+++||+.+.|-+++++ +|+|++ ++++||..+|+++||++|+++.|+|..+ .+.+
T Consensus 331 vkRGmvl~~pGsvk~~~k~ea~----~YiLsk~EGGR~~pf~s~y~~q~fs~TwD~~~~v~~~-------------~~~~ 393 (449)
T KOG0460|consen 331 VKRGMVLAKPGSVKPHNKFEAQ----LYILSKEEGGRHKPFVSGYRPQMFSRTWDVTGRVDIP-------------PEKE 393 (449)
T ss_pred HhcccEEecCCcccccceeeEE----EEEEEhhhCCCccchhhccchhheeeecccceEEEcc-------------ChHh
Confidence 8999999999999999988886 566665 4899999999999999999999998854 2247
Q ss_pred ccCCCCeeEEEEEeCceEEeeeccCCCceeeEEEEECCCeEEEEEEEEeee
Q psy15204 170 ALTKSMSAQVVIETVRPMCVELYRDVKELGRFMLRVSGVTIAAGLITKVIF 220 (232)
Q Consensus 170 ~Lk~GD~A~V~I~l~kPI~vE~fs~~p~LGRFiLRD~g~TVAaGiI~~V~~ 220 (232)
+++|||.+++++.+.+|+++|+.+ ||.||++|+|||.|+|+.++.
T Consensus 394 mvMPGe~~~~~~~Li~pm~le~Gq------rFtiReGg~TvgtGvvt~~l~ 438 (449)
T KOG0460|consen 394 MVMPGENVKVEVTLIRPMPLEKGQ------RFTLREGGRTVGTGVVTDTLP 438 (449)
T ss_pred cccCCCCeEEEEEEecccccCCCc------eeeEccCCeeeeeeeEeeeee
Confidence 999999999999999999999999 999999999999999999886
No 27
>KOG0458|consensus
Probab=99.75 E-value=2.1e-18 Score=168.30 Aligned_cols=174 Identities=31% Similarity=0.504 Sum_probs=149.3
Q ss_pred eeeeeecCCeEEEEecCceeeeccccccc-ccccccCC-CCcccccCcccCCCCccccccCCCCCCCCCCCCCCCCcccc
Q psy15204 17 WICLFIIPKLTIIISDANVKTDVSSNPSA-SAADQSFP-DTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPSTPVS 94 (232)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 94 (232)
-+.+.+.||++|.+-|..-.+-|+++.+. ..-+.++- |||--..+.+. +.|.+.|+.- +| -|.+||+
T Consensus 427 iesG~iq~gqkl~i~~s~e~~~vk~l~~~~~~~~~a~AGD~Vsl~L~~i~----~n~v~~g~i~------~~-~~~~~i~ 495 (603)
T KOG0458|consen 427 IESGYIQPGQKLYIMTSREDATVKGLTSNDEPKTWAVAGDNVSLKLPGIL----PNLVQVGDIA------DS-GPQFPIS 495 (603)
T ss_pred EeccccccCCEEEEecCcceEEEEeeecCCCcceeEeeCCEEEEecCccC----hhhcccceee------ec-CCCcccc
Confidence 35577899999999999999999999997 57777787 88877777754 4455655553 22 3334444
Q ss_pred cccccccCCccCCCCCCCCcceEEEEEEeCCCccCcCCCCeEEEEEecceEEEEEEEeeeecccCccceeccCCcccCCC
Q psy15204 95 RSRSPATPTCTSPTPDQEPSRSVKLVKLSNVYQVGFIKELKVGMHQQSLAESAVITRLLSQVHKTSGEVIRKKPRALTKS 174 (232)
Q Consensus 95 rg~v~a~p~~~~~~p~~~as~~a~Iv~L~~e~~~PI~~Gy~p~Lh~~T~~v~~rI~kI~~kIDk~Tg~~~kk~pk~Lk~G 174 (232)
++ -.|.+++.|| +...|+..|.+..+|+|+..++|++.++...+|+.||+..++.||+|..|
T Consensus 496 ~~----------------~~f~~~~~~f--~~~~Pi~~g~~l~l~~~~~~~pa~~~~l~~~~~k~t~~i~kk~pR~L~~~ 557 (603)
T KOG0458|consen 496 KT----------------TRFVARITTF--DINLPITKGSPLILHFGSLSEPAVLKKLTSSINKSTGEIVKKKPRCLTSN 557 (603)
T ss_pred ce----------------eEEEEEEEEe--eccccccCCcceEEEeccccchhhhhhhhhhhccCCCchhhcccceeccC
Confidence 33 1367889999 47899999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEEeCceEEeeeccCCCceeeEEEEECCCeEEEEEEEEee
Q psy15204 175 MSAQVVIETVRPMCVELYRDVKELGRFMLRVSGVTIAAGLITKVI 219 (232)
Q Consensus 175 D~A~V~I~l~kPI~vE~fs~~p~LGRFiLRD~g~TVAaGiI~~V~ 219 (232)
+.|.+++++..|||+|+|.+++.||||+||..|+|||+|+|+++.
T Consensus 558 ~~a~vele~~~pI~~etf~~~~~lgr~vlr~~g~TiAaG~V~~i~ 602 (603)
T KOG0458|consen 558 QSAIVELETERPICLETFAENRALGRVVLRKSGSTIAAGKVTEII 602 (603)
T ss_pred ceeeeeccccCchhhhhhhhchhheeEEEeccCceeeeeeEEeec
Confidence 999999999999999999999999999999999999999999874
No 28
>cd03708 GTPBP_III Domain III of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=99.74 E-value=2.1e-17 Score=123.59 Aligned_cols=82 Identities=20% Similarity=0.188 Sum_probs=73.5
Q ss_pred cceEEEEEEeCCCccCcCCCCeEEEEEecceEEEEEEEeeeecccCccceeccCCcccCCCCeeEEEEEe-CceEEeeec
Q psy15204 114 SRSVKLVKLSNVYQVGFIKELKVGMHQQSLAESAVITRLLSQVHKTSGEVIRKKPRALTKSMSAQVVIET-VRPMCVELY 192 (232)
Q Consensus 114 s~~a~Iv~L~~e~~~PI~~Gy~p~Lh~~T~~v~~rI~kI~~kIDk~Tg~~~kk~pk~Lk~GD~A~V~I~l-~kPI~vE~f 192 (232)
.|+++++||+ ++.||.+||++++|+||.+++|+|.++.+ +++++||.+.|+|++ .+|+|+|+
T Consensus 5 ~f~A~i~il~--~~~~i~~Gy~~~l~~~t~~~~~~i~~i~~--------------~~l~~g~~~~v~i~f~~~p~~~e~- 67 (87)
T cd03708 5 EFEAEILVLH--HPTTISPGYQATVHIGSIRQTARIVSIDK--------------DVLRTGDRALVRFRFLYHPEYLRE- 67 (87)
T ss_pred EEEEEEEEEc--CCCcccCCCEeEEEEcCCEEEEEEEeccH--------------hhccCCCeEEEEEEECCCCcEEcc-
Confidence 5788999994 78999999999999999999999998742 689999999999995 89999887
Q ss_pred cCCCceeeEEEEECCCeEEEEEEEEe
Q psy15204 193 RDVKELGRFMLRVSGVTIAAGLITKV 218 (232)
Q Consensus 193 s~~p~LGRFiLRD~g~TVAaGiI~~V 218 (232)
+|||+||++ +|||+|+|+++
T Consensus 68 -----~grf~lr~g-~tva~G~I~~~ 87 (87)
T cd03708 68 -----GQRLIFREG-RTKGVGEVTKV 87 (87)
T ss_pred -----CCeEEEECC-CcEEEEEEEEC
Confidence 689999876 99999999864
No 29
>cd03706 mtEFTU_III Domain III of mitochondrial EF-TU (mtEF-TU). mtEF-TU is highly conserved and is 55-60% identical to bacterial EF-TU. The overall structure is similar to that observed in the Escherichia coli and Thermus aquaticus EF-TU. However, compared with that observed in prokaryotic EF-TU the nucleotide-binding domain (domain I) of EF-TUmt is in a different orientation relative to the rest of the structure. Furthermore, domain III is followed by a short 11-amino acid extension that forms one helical turn. This extension seems to be specific to the mitochondrial factors and has not been observed in any of the prokaryotic factors.
Probab=99.69 E-value=5.2e-16 Score=118.06 Aligned_cols=86 Identities=23% Similarity=0.267 Sum_probs=76.1
Q ss_pred cceEEEEEEeCC---CccCcCCCCeEEEEEecceEEEEEEEeeeecccCccceeccCCcccCCCCeeEEEEEeCceEEee
Q psy15204 114 SRSVKLVKLSNV---YQVGFIKELKVGMHQQSLAESAVITRLLSQVHKTSGEVIRKKPRALTKSMSAQVVIETVRPMCVE 190 (232)
Q Consensus 114 s~~a~Iv~L~~e---~~~PI~~Gy~p~Lh~~T~~v~~rI~kI~~kIDk~Tg~~~kk~pk~Lk~GD~A~V~I~l~kPI~vE 190 (232)
.|+++++||+.+ +++||..||++++|++|.++.|+|..+ | ++++|++||.+.|+|.+.+|+++|
T Consensus 5 ~f~a~i~~L~~~~~g~~~~i~~g~~~~~~~~t~~~~~~i~~~----~---------~~~~l~~g~~~~v~i~l~~p~~~~ 71 (93)
T cd03706 5 KVEAQVYILSKAEGGRHKPFVSNFQPQMFSLTWDCAARIDLP----P---------GKEMVMPGEDTKVTLILRRPMVLE 71 (93)
T ss_pred EEEEEEEEEcccccCCCccccCCCeeEEEeccceEEEEEECC----C---------CCcEeCCCCEEEEEEEECCcEEEe
Confidence 578899999631 268999999999999999999999976 1 267899999999999999999999
Q ss_pred eccCCCceeeEEEEECCCeEEEEEEEEe
Q psy15204 191 LYRDVKELGRFMLRVSGVTIAAGLITKV 218 (232)
Q Consensus 191 ~fs~~p~LGRFiLRD~g~TVAaGiI~~V 218 (232)
++ |||+|||+++|||+|+|+++
T Consensus 72 ~g------~rf~lR~~~~tvg~G~V~~~ 93 (93)
T cd03706 72 KG------QRFTLRDGNRTIGTGLVTDT 93 (93)
T ss_pred eC------CEEEEEECCEEEEEEEEEeC
Confidence 95 69999999999999999764
No 30
>cd03707 EFTU_III Domain III of elongation factor (EF) Tu. Ef-Tu consists of three structural domains, designated I, II and III. Domain III adopts a beta barrel structure. Domain III is involved in binding to both charged tRNA and binding to elongation factor Ts (EF-Ts). EF-Ts is the guanine-nucleotide-exchange factor for EF-Tu. EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Crystallographic studies revealed structural similarities ("molecular mimicry") between tertiary structures of EF-G and the EF-Tu-aminoacyl-tRNA ternary complex. Domains III, IV, and V of EF-G mimic the tRNA structure in the EF-Tu ternary complex; domains III, IV and V can be related to the acceptor stem, anticodon helix
Probab=99.67 E-value=9.1e-16 Score=115.75 Aligned_cols=83 Identities=18% Similarity=0.250 Sum_probs=74.0
Q ss_pred cceEEEEEEeCC---CccCcCCCCeEEEEEecceEEEEEEEeeeecccCccceeccCCcccCCCCeeEEEEEeCceEEee
Q psy15204 114 SRSVKLVKLSNV---YQVGFIKELKVGMHQQSLAESAVITRLLSQVHKTSGEVIRKKPRALTKSMSAQVVIETVRPMCVE 190 (232)
Q Consensus 114 s~~a~Iv~L~~e---~~~PI~~Gy~p~Lh~~T~~v~~rI~kI~~kIDk~Tg~~~kk~pk~Lk~GD~A~V~I~l~kPI~vE 190 (232)
.++++++||+.+ ++.||..||++.+|++|.++.|+|..+. ++++|++||.+.|+|.+++|+++|
T Consensus 5 ~~~a~i~~l~~~~~g~~~~i~~g~~~~l~~gt~~~~~~i~~l~-------------~~~~i~~g~~~~v~l~l~~pv~~~ 71 (90)
T cd03707 5 KFEAEVYVLTKEEGGRHTPFFSGYRPQFYIRTTDVTGSITLPE-------------GTEMVMPGDNVKMTVELIHPIALE 71 (90)
T ss_pred EEEEEEEEEcccccCCCCcccCCceeEEEeccCeEEEEEEccC-------------cccccCCCCEEEEEEEECCcEEEe
Confidence 578899999732 1589999999999999999999999863 467899999999999999999999
Q ss_pred eccCCCceeeEEEEECCCeEEEEEE
Q psy15204 191 LYRDVKELGRFMLRVSGVTIAAGLI 215 (232)
Q Consensus 191 ~fs~~p~LGRFiLRD~g~TVAaGiI 215 (232)
.+ |||+||++++|||+|+|
T Consensus 72 ~~------~rf~lR~~~~tig~G~V 90 (90)
T cd03707 72 KG------LRFAIREGGRTVGAGVI 90 (90)
T ss_pred cC------CEEEEecCCcEEEEEEC
Confidence 85 69999999999999986
No 31
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.61 E-value=5.6e-15 Score=139.54 Aligned_cols=146 Identities=18% Similarity=0.186 Sum_probs=117.2
Q ss_pred heeeeeecCCeEEEEecCc------------eeeeccccccc-ccccccCC-CCcccccCcccCCCCccccccCCCCCCC
Q psy15204 16 SWICLFIIPKLTIIISDAN------------VKTDVSSNPSA-SAADQSFP-DTSGFAVPECIPTKTPTQKKLGPSSSTP 81 (232)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (232)
.=+.+.+++||.|.|-|.+ +++.|+|+++| ...+++.| |++|++++ ... .+-.
T Consensus 239 ~v~~G~l~~gd~v~i~P~~~~~~~~~~~~~~~~~~VksI~~~~~~~~~a~~G~~v~i~l~-~~~-------~i~~----- 305 (411)
T PRK04000 239 SLIQGVLKVGDEIEIRPGIKVEEGGKTKWEPITTKIVSLRAGGEKVEEARPGGLVGVGTK-LDP-------SLTK----- 305 (411)
T ss_pred EEEeCEEecCCEEEEcCCcceecccccccccceEEEeEEEECCEECCEEcCCCEEEEEec-cCC-------CCCH-----
Confidence 3457889999999999975 47899999997 69999999 99999875 100 0000
Q ss_pred CCCCCCCCCcccccccccccCCccCCCCCCCCcceEEEEEEeCCC---------ccCcCCCCeEEEEEecceEEEEEEEe
Q psy15204 82 VTPRSQSPSTPVSRSRSPATPTCTSPTPDQEPSRSVKLVKLSNVY---------QVGFIKELKVGMHQQSLAESAVITRL 152 (232)
Q Consensus 82 ~~~~~~~~~~~v~rg~v~a~p~~~~~~p~~~as~~a~Iv~L~~e~---------~~PI~~Gy~p~Lh~~T~~v~~rI~kI 152 (232)
.-++||||++.|+.. |.....|+++++||. + +++|.+||++++|++|.+++|+|..|
T Consensus 306 ---------~~i~~G~vl~~~~~~---~~~~~~f~a~v~~l~--~~~~~~~~~~~~~i~~g~~~~l~~~t~~~~~~i~~i 371 (411)
T PRK04000 306 ---------ADALAGSVAGKPGTL---PPVWESLTIEVHLLE--RVVGTKEELKVEPIKTGEPLMLNVGTATTVGVVTSA 371 (411)
T ss_pred ---------HHccCccEEEcCCCC---CCceEEEEEEEEEEE--hhcCccccccCCCCCCCCEEEEEEeccEEEEEEEEc
Confidence 136899999999533 333456889999995 4 68999999999999999999999987
Q ss_pred eeecccCccceeccCCcccCCCCeeEEEEEeCceEEeeeccCCCceeeEEE--EECC--CeEEEEEEE
Q psy15204 153 LSQVHKTSGEVIRKKPRALTKSMSAQVVIETVRPMCVELYRDVKELGRFML--RVSG--VTIAAGLIT 216 (232)
Q Consensus 153 ~~kIDk~Tg~~~kk~pk~Lk~GD~A~V~I~l~kPI~vE~fs~~p~LGRFiL--RD~g--~TVAaGiI~ 216 (232)
. +| .+++++.+|+|++..+ ||+| |+++ +++|.|+|.
T Consensus 372 ~--------------------~~--~~~~~l~~p~~~~~g~------r~~~~~~~~~~~~~~~~~~~~ 411 (411)
T PRK04000 372 R--------------------KD--EAEVKLKRPVCAEEGD------RVAISRRVGGRWRLIGYGIIK 411 (411)
T ss_pred C--------------------Cc--EEEEEECCcEecCCCC------EEEEEEecCCcEEEEEEEEeC
Confidence 2 12 4667789999999999 9999 7888 899999873
No 32
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.56 E-value=3.6e-14 Score=136.58 Aligned_cols=149 Identities=15% Similarity=0.130 Sum_probs=116.8
Q ss_pred eeeeeecCCeEEEEecCc-------------eeeeccccccc-ccccccCC-CCcccccCcccCCCCccccccCCCCCCC
Q psy15204 17 WICLFIIPKLTIIISDAN-------------VKTDVSSNPSA-SAADQSFP-DTSGFAVPECIPTKTPTQKKLGPSSSTP 81 (232)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (232)
=+.+.+++||.|.|.|.+ .++.|+|+++| ..+++|.| |++|++.+ . .++
T Consensus 272 v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~VksI~~~~~~v~~a~aG~~vai~l~-l-----------d~~---- 335 (460)
T PTZ00327 272 ILQGVLKVGDEIEIRPGIISKDSGGEFTCRPIRTRIVSLFAENNELQYAVPGGLIGVGTT-I-----------DPT---- 335 (460)
T ss_pred EeeceEecCCEEEEccCcccccccCccccccceEEEEEEEECCeECCEEcCCCEEEEEec-c-----------CCC----
Confidence 356788999999999986 57999999997 69999999 99999864 1 111
Q ss_pred CCCCCCCCCcccccccccccCCccCCCCCCCCcceEEEEEEeCC--------C----ccCcCCCCeEEEEEecceEEEEE
Q psy15204 82 VTPRSQSPSTPVSRSRSPATPTCTSPTPDQEPSRSVKLVKLSNV--------Y----QVGFIKELKVGMHQQSLAESAVI 149 (232)
Q Consensus 82 ~~~~~~~~~~~v~rg~v~a~p~~~~~~p~~~as~~a~Iv~L~~e--------~----~~PI~~Gy~p~Lh~~T~~v~~rI 149 (232)
+. + .-++||||++.|+.. |.....++++++||... + +.||..||++.+|++|.++.|+|
T Consensus 336 v~-~-----~dv~rG~Vl~~~~~~---~~~~~~~~a~v~~L~~~~~~~~~~~~~~~~~~~l~~g~~~~l~~gt~~~~~~i 406 (460)
T PTZ00327 336 LT-R-----ADRLVGQVLGYPGKL---PEVYAEIEIQYYLLRRLLGVKSQDGKKATKVAKLKKGESLMINIGSTTTGGRV 406 (460)
T ss_pred cc-h-----hhcccccEEEcCCCC---CceeEEEEEEEEEecccccccccccccccCCcccCCCCEEEEEecccEEEEEE
Confidence 00 0 137899999998743 33334688999999520 0 27999999999999999999999
Q ss_pred EEeeeecccCccceeccCCcccCCCCeeEEEEEeCceEEeeeccCCCceeeEEEEEC----CCeEEEEEEEE
Q psy15204 150 TRLLSQVHKTSGEVIRKKPRALTKSMSAQVVIETVRPMCVELYRDVKELGRFMLRVS----GVTIAAGLITK 217 (232)
Q Consensus 150 ~kI~~kIDk~Tg~~~kk~pk~Lk~GD~A~V~I~l~kPI~vE~fs~~p~LGRFiLRD~----g~TVAaGiI~~ 217 (232)
..|. . +. .++|++.+|+|+...+ ||+||+. .+|+|.|.|.+
T Consensus 407 ~~i~----~----------------~~-~~~l~l~~P~~~~~gd------r~ilr~~~~~~~~tig~G~i~~ 451 (460)
T PTZ00327 407 VGIK----D----------------DG-IAKLELTTPVCTSVGE------KIALSRRVDKHWRLIGWGTIRK 451 (460)
T ss_pred EEeC----C----------------Ce-EEEEEECccEeccCCC------EEEEEeccCCCcEEEEEEEEcC
Confidence 9872 1 00 5678899999999998 9999963 37999999875
No 33
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.54 E-value=5.4e-14 Score=132.37 Aligned_cols=145 Identities=19% Similarity=0.179 Sum_probs=114.3
Q ss_pred eeeeecCCeEEEEecCc------------eeeeccccccc-ccccccCC-CCcccccCcccCCCCccccccCCCCCCCCC
Q psy15204 18 ICLFIIPKLTIIISDAN------------VKTDVSSNPSA-SAADQSFP-DTSGFAVPECIPTKTPTQKKLGPSSSTPVT 83 (232)
Q Consensus 18 ~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (232)
..+.+++||.|.|.|++ +++.|+|+++| ..+++|.| |++|++++.- + .+..
T Consensus 236 ~~G~i~~gd~v~i~P~~~~~~~g~~~~~~~~~~V~sI~~~~~~~~~a~~G~~v~i~l~~~-~-------~i~~------- 300 (406)
T TIGR03680 236 IQGKLKVGDEIEIRPGIKVEKGGKTKWEPIYTEITSLRAGGYKVEEARPGGLVGVGTKLD-P-------ALTK------- 300 (406)
T ss_pred EeCEEeCCCEEEEccCccccccccccccccceEEeEEEECCEECCEEcCCCEEEEeeccC-C-------CCCH-------
Confidence 56889999999999984 57899999997 68999999 9999987410 0 1111
Q ss_pred CCCCCCCcccccccccccCCccCCCCCCCCcceEEEEEEeCC-------CccCcCCCCeEEEEEecceEEEEEEEeeeec
Q psy15204 84 PRSQSPSTPVSRSRSPATPTCTSPTPDQEPSRSVKLVKLSNV-------YQVGFIKELKVGMHQQSLAESAVITRLLSQV 156 (232)
Q Consensus 84 ~~~~~~~~~v~rg~v~a~p~~~~~~p~~~as~~a~Iv~L~~e-------~~~PI~~Gy~p~Lh~~T~~v~~rI~kI~~kI 156 (232)
.-|+||||++.|+.. |.....|+++++||... ++.+|..||++++|++|.+++|+|..+..
T Consensus 301 -------~dv~~G~vl~~~~~~---~~~~~~f~a~i~~l~~~~~~~~~~~~~~i~~g~~~~l~~gt~~~~~~v~~~~~-- 368 (406)
T TIGR03680 301 -------ADALAGQVVGKPGTL---PPVWESLELEVHLLERVVGTEEELKVEPIKTGEVLMLNVGTATTVGVVTSARK-- 368 (406)
T ss_pred -------HHcccccEEEcCCCC---CCceeEEEEEEEEEecccCcccccccccCCCCCEEEEEEccceEEEEEEEcCC--
Confidence 247899999999732 33445578899999511 24899999999999999999999998631
Q ss_pred ccCccceeccCCcccCCCCeeEEEEEeCceEEeeeccCCCceeeEEE--EECC--CeEEEEEE
Q psy15204 157 HKTSGEVIRKKPRALTKSMSAQVVIETVRPMCVELYRDVKELGRFML--RVSG--VTIAAGLI 215 (232)
Q Consensus 157 Dk~Tg~~~kk~pk~Lk~GD~A~V~I~l~kPI~vE~fs~~p~LGRFiL--RD~g--~TVAaGiI 215 (232)
+ .+++.+.+|+|+...+ ||+| |+++ +++|.|.|
T Consensus 369 ------------------~--~~~l~l~~p~~~~~g~------r~~~~~~~~~~~~~~g~g~~ 405 (406)
T TIGR03680 369 ------------------D--EIEVKLKRPVCAEEGD------RVAISRRVGGRWRLIGYGII 405 (406)
T ss_pred ------------------c--EEEEEECCcEEcCCCC------EEEEEEecCCceEEEEEEEe
Confidence 1 3667789999999999 9999 5666 69999987
No 34
>cd04094 selB_III This family represents the domain of elongation factor SelB, homologous to domain III of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=99.47 E-value=4.6e-13 Score=102.86 Aligned_cols=95 Identities=21% Similarity=0.218 Sum_probs=81.3
Q ss_pred ccccccCCccCCCCCCCCcceEEEEEEeCCCccCcCCCCeEEEEEecceEEEEEEEeeeecccCccceeccCCcccCCCC
Q psy15204 96 SRSPATPTCTSPTPDQEPSRSVKLVKLSNVYQVGFIKELKVGMHQQSLAESAVITRLLSQVHKTSGEVIRKKPRALTKSM 175 (232)
Q Consensus 96 g~v~a~p~~~~~~p~~~as~~a~Iv~L~~e~~~PI~~Gy~p~Lh~~T~~v~~rI~kI~~kIDk~Tg~~~kk~pk~Lk~GD 175 (232)
|||+++|++..++.. ++++++++. ....||..+|++++|++|.++.|+|.-+ | .+.+++||
T Consensus 1 G~vl~~~~~~~~~~~----~~~~i~~l~-~~~~~l~~~~~v~~~~Gt~~v~~ri~ll----~----------~~~~~pg~ 61 (97)
T cd04094 1 GDVLADPGSLLPTRR----LDVRLTVLL-SAPRPLKHRQRVHLHHGTSEVLARVVLL----D----------RDELAPGE 61 (97)
T ss_pred CCEEecCCCcCCceE----EEEEEEEEC-CCCccCCCCCeEEEEeccceEEEEEEeC----C----------ccccCCCC
Confidence 799999999887533 455667776 3468999999999999999999999854 2 25789999
Q ss_pred eeEEEEEeCceEEeeeccCCCceeeEEEEECC--CeEEEEEE
Q psy15204 176 SAQVVIETVRPMCVELYRDVKELGRFMLRVSG--VTIAAGLI 215 (232)
Q Consensus 176 ~A~V~I~l~kPI~vE~fs~~p~LGRFiLRD~g--~TVAaGiI 215 (232)
.+.++|++++|++++..+ ||+||+.+ +|||.|+|
T Consensus 62 ~~~a~l~l~~pl~~~~gd------rfilR~~~~~~tiggG~V 97 (97)
T cd04094 62 EALAQLRLEEPLVALRGD------RFILRSYSPLRTLGGGRV 97 (97)
T ss_pred EEEEEEEECCcEeecCCC------eEEEeeCCCCeEEEeEEC
Confidence 999999999999999998 99999998 99999986
No 35
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.45 E-value=1.6e-13 Score=130.09 Aligned_cols=149 Identities=15% Similarity=0.136 Sum_probs=127.7
Q ss_pred eeeeecCCeEEEEecCc----eeeeccccccc-ccccccCC-CCcccccCcccCCCCccccccCCCCCCCCCCCCCCCCc
Q psy15204 18 ICLFIIPKLTIIISDAN----VKTDVSSNPSA-SAADQSFP-DTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPST 91 (232)
Q Consensus 18 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (232)
..+.+.-|+++.+-|-. -+..|+||+|| .-.|.|.+ +-+||+++.+.. .
T Consensus 371 ~~G~l~~gd~vllGP~~~G~fr~v~vkSIemh~~rvdsa~aG~iig~Al~gv~~-------------------------e 425 (527)
T COG5258 371 KSGILHVGDTVLLGPFKDGKFREVVVKSIEMHHYRVDSAKAGSIIGIALKGVEK-------------------------E 425 (527)
T ss_pred EeeeeccCCEEEEccCCCCcEEEEEEEEEEEeeEEeccccCCcEEEEEecccCH-------------------------H
Confidence 34567778899888843 46789999998 58999999 889999998853 2
Q ss_pred ccccccccccCCccCCCCCCCCcceEEEEEEeCCCccCcCCCCeEEEEEecceEEEEEEEeeeecccCccceeccCCccc
Q psy15204 92 PVSRSRSPATPTCTSPTPDQEPSRSVKLVKLSNVYQVGFIKELKVGMHQQSLAESAVITRLLSQVHKTSGEVIRKKPRAL 171 (232)
Q Consensus 92 ~v~rg~v~a~p~~~~~~p~~~as~~a~Iv~L~~e~~~PI~~Gy~p~Lh~~T~~v~~rI~kI~~kIDk~Tg~~~kk~pk~L 171 (232)
.++|||||+++ ..|..--.|+|.+++| .||+-|..||.+++|..|....+++++| | ..+|
T Consensus 426 ~lerGMVl~~~----~~pkaVref~AeV~vl--~HPT~I~aGye~v~H~etI~e~~~f~~i----d----------~~~L 485 (527)
T COG5258 426 ELERGMVLSAG----ADPKAVREFDAEVLVL--RHPTTIRAGYEPVFHYETIREAVYFEEI----D----------KGFL 485 (527)
T ss_pred HHhcceEecCC----CCchhhheecceEEEE--eCCcEEecCceeeeEeeEeeheeEEEEc----c----------cccc
Confidence 37899999998 4467777788899999 6999999999999999999999999986 3 2689
Q ss_pred CCCCeeEEEEEeC-ceEEeeeccCCCceeeEEEEECCCeEEEEEEEEe
Q psy15204 172 TKSMSAQVVIETV-RPMCVELYRDVKELGRFMLRVSGVTIAAGLITKV 218 (232)
Q Consensus 172 k~GD~A~V~I~l~-kPI~vE~fs~~p~LGRFiLRD~g~TVAaGiI~~V 218 (232)
++||.+.+++++. +|-.+|..+ +|++|+ |+|-|.|.|+++
T Consensus 486 ~~GD~g~vr~~fkyrP~~v~eGQ------~fvFRe-GrskgvG~v~~~ 526 (527)
T COG5258 486 MPGDRGVVRMRFKYRPHHVEEGQ------KFVFRE-GRSKGVGRVIRV 526 (527)
T ss_pred cCCCcceEEEEEEeCchhhccCc------EEEEec-CCCccceEEecc
Confidence 9999999999997 999999998 999996 789999999875
No 36
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.44 E-value=8.4e-13 Score=130.94 Aligned_cols=141 Identities=11% Similarity=0.064 Sum_probs=115.6
Q ss_pred eeeeecCCeEEEEecCceeeeccccccc-ccccccCC-CCcccccCc-ccCCCCccccccCCCCCCCCCCCCCCCCcccc
Q psy15204 18 ICLFIIPKLTIIISDANVKTDVSSNPSA-SAADQSFP-DTSGFAVPE-CIPTKTPTQKKLGPSSSTPVTPRSQSPSTPVS 94 (232)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 94 (232)
+.+.++.|++|.+.|.+.++.|+|+++| +..+++.| |++|+|+++ +.. .-|+
T Consensus 197 ~sG~l~~Gd~v~i~p~~~~~~VrsIq~~~~~v~~a~aG~rval~l~g~~~~-------------------------~~i~ 251 (614)
T PRK10512 197 LSGEVKVGDTLWLTGVNKPMRVRGLHAQNQPTEQAQAGQRIALNIAGDAEK-------------------------EQIN 251 (614)
T ss_pred ecceEecCCEEEEcCCCCcEEEEEEecCCcCCCEEeCCCeEEEEecCCCCh-------------------------hhCC
Confidence 3578999999999999999999999998 69999999 999999875 421 1278
Q ss_pred cccccccCCccCCCCCCCCcceEEEEEEeCCCccCcCCCCeEEEEEecceEEEEEEEeeeecccCccceeccCCcccCCC
Q psy15204 95 RSRSPATPTCTSPTPDQEPSRSVKLVKLSNVYQVGFIKELKVGMHQQSLAESAVITRLLSQVHKTSGEVIRKKPRALTKS 174 (232)
Q Consensus 95 rg~v~a~p~~~~~~p~~~as~~a~Iv~L~~e~~~PI~~Gy~p~Lh~~T~~v~~rI~kI~~kIDk~Tg~~~kk~pk~Lk~G 174 (232)
||++++.|+... .....++++ .+..||..|+++.+|++|.++.|+|..+.
T Consensus 252 rGdvl~~~~~~~-------~~~~~~~~l--~~~~~l~~~~~~~~~~gt~~~~~~i~~l~--------------------- 301 (614)
T PRK10512 252 RGDWLLADAPPE-------PFTRVIVEL--QTHTPLTQWQPLHIHHAASHVTGRVSLLE--------------------- 301 (614)
T ss_pred CcCEEeCCCCCc-------cceeEEEEE--cCCccCCCCCEEEEEEcccEEEEEEEEcC---------------------
Confidence 999999885332 112234566 35789999999999999999999999761
Q ss_pred CeeEEEEEeCceEEeeeccCCCceeeEEEEE--CCCeEEEEEEEEeee
Q psy15204 175 MSAQVVIETVRPMCVELYRDVKELGRFMLRV--SGVTIAAGLITKVIF 220 (232)
Q Consensus 175 D~A~V~I~l~kPI~vE~fs~~p~LGRFiLRD--~g~TVAaGiI~~V~~ 220 (232)
.+.+.+.+.+|+++...+ ||+||+ ..+|+|.|.|....+
T Consensus 302 -~~~~~l~l~~p~~~~~gd------r~ilr~~s~~~tigGg~Vld~~~ 342 (614)
T PRK10512 302 -DNLAELVLDTPLWLADND------RLVLRDISARNTLAGARVVMLNP 342 (614)
T ss_pred -CeEEEEEECCcccccCCC------EEEEEeCCCCEEEEEEEEcccCC
Confidence 245888999999999998 999999 578999999987654
No 37
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.27 E-value=3.6e-11 Score=118.53 Aligned_cols=137 Identities=13% Similarity=0.110 Sum_probs=106.9
Q ss_pred eeeeecCCeEEEEecCceeeeccccccc-ccccccCC-CCcccccCcccCCCCccccccCCCCCCCCCCCCCCCCccccc
Q psy15204 18 ICLFIIPKLTIIISDANVKTDVSSNPSA-SAADQSFP-DTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPSTPVSR 95 (232)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r 95 (232)
+.+.+++||+|.+.|.+.++.|+|+++| +..+++.| |++|+|.+++.. .+ |+|
T Consensus 199 ~~G~i~~Gd~l~i~P~~~~~~Vr~iq~~~~~v~~a~aG~rval~L~~i~~------~~-------------------i~r 253 (581)
T TIGR00475 199 FSGEVKVGDNLRLLPINHEVRVKAIQAQNQDVEIAYAGQRIALNLMDVEP------ES-------------------LKR 253 (581)
T ss_pred ecceEecCCEEEECCCCceEEEeEEEECCccCCEEECCCEEEEEeCCCCH------HH-------------------cCC
Confidence 4678999999999999999999999998 69999999 999999998742 11 455
Q ss_pred ccccccCCccCCCCCCCCcceEEEEEEeCCCccCcCCCCeEEEEEecceEEEEEEEeeeecccCccceeccCCcccCCCC
Q psy15204 96 SRSPATPTCTSPTPDQEPSRSVKLVKLSNVYQVGFIKELKVGMHQQSLAESAVITRLLSQVHKTSGEVIRKKPRALTKSM 175 (232)
Q Consensus 96 g~v~a~p~~~~~~p~~~as~~a~Iv~L~~e~~~PI~~Gy~p~Lh~~T~~v~~rI~kI~~kIDk~Tg~~~kk~pk~Lk~GD 175 (232)
|++++.|.... ....+ .+. ...+|..||++.+|++|.++.|+|..+. .+
T Consensus 254 G~~~~~~~~~~------~~~~~---~~~--~~~~l~~~~~~~~~~gt~~~~~~i~~l~----~~---------------- 302 (581)
T TIGR00475 254 GLLILTPEDPK------LRVVV---KFI--AEVPLLELQPYHIAHGMSVTTGKISLLD----KG---------------- 302 (581)
T ss_pred ceEEcCCCCCC------ceEEE---EEE--cCCccCCCCeEEEEEeceEEEEEEEEcc----Cc----------------
Confidence 64544443211 11122 222 3578999999999999999999988762 11
Q ss_pred eeEEEEEeCceEEeeeccCCCceeeEEEEEC-CCeEEEEEEEEe
Q psy15204 176 SAQVVIETVRPMCVELYRDVKELGRFMLRVS-GVTIAAGLITKV 218 (232)
Q Consensus 176 ~A~V~I~l~kPI~vE~fs~~p~LGRFiLRD~-g~TVAaGiI~~V 218 (232)
.+++.+.+|+++...+ ||+||++ ..|+|.|.|...
T Consensus 303 --~~~l~l~~P~~~~~gd------~~i~r~~~~~tiggg~vl~~ 338 (581)
T TIGR00475 303 --IALLTLDAPLILAKGD------KLVLRDSSGNFLAGARVLEP 338 (581)
T ss_pred --EEEEEECCceecCCCC------EEEEEeCCCEEEeeeEEecC
Confidence 5667789999999998 9999996 679999999865
No 38
>KOG0463|consensus
Probab=98.63 E-value=9.7e-08 Score=91.33 Aligned_cols=109 Identities=18% Similarity=0.225 Sum_probs=91.2
Q ss_pred CCcccccccccccCCccCCCCCCCCcceEEEEEEeCCCccCcCCCCeEEEEEecceEEEEEEEeeeecccCccceeccCC
Q psy15204 89 PSTPVSRSRSPATPTCTSPTPDQEPSRSVKLVKLSNVYQVGFIKELKVGMHQQSLAESAVITRLLSQVHKTSGEVIRKKP 168 (232)
Q Consensus 89 ~~~~v~rg~v~a~p~~~~~~p~~~as~~a~Iv~L~~e~~~PI~~Gy~p~Lh~~T~~v~~rI~kI~~kIDk~Tg~~~kk~p 168 (232)
+...|++||||..|. ..|..--.|++.|++| .|++-|++.|+.++||++.+.+++|... + .
T Consensus 442 kr~~vRKGMVmVsp~---lkPqAsweFEaEILVL--HHPTTIsprYQAMvHcGSiRQTAtivsM----~----------k 502 (641)
T KOG0463|consen 442 KRKDVRKGMVMVSPK---LKPQASWEFEAEILVL--HHPTTISPRYQAMVHCGSIRQTATIVSM----G----------K 502 (641)
T ss_pred chhhhhcceEEecCC---CCcceeeEEeeeEEEE--ecCCccCcchhheeeeccccceeeeeec----C----------h
Confidence 445689999999885 3455445578899999 6999999999999999999999998764 2 3
Q ss_pred cccCCCCeeEEEEEe-CceEEeeeccCCCceeeEEEEECCCeEEEEEEEEeeeccC
Q psy15204 169 RALTKSMSAQVVIET-VRPMCVELYRDVKELGRFMLRVSGVTIAAGLITKVIFDQC 223 (232)
Q Consensus 169 k~Lk~GD~A~V~I~l-~kPI~vE~fs~~p~LGRFiLRD~g~TVAaGiI~~V~~k~~ 223 (232)
++|..||.+.|.|++ .+|=++.+.+ |.++|+ |+|-|+|.|.++++.++
T Consensus 503 dcLRTGDka~V~FrFIkqPEYir~gq------rlVFRE-GRTKAVGti~~~lp~~~ 551 (641)
T KOG0463|consen 503 DCLRTGDKAKVQFRFIKQPEYIRPGQ------RLVFRE-GRTKAVGTISSVLPQES 551 (641)
T ss_pred hhhhcCCcceEEEEEecCcceecCCc------eEEeec-ccceeeeeecccccccc
Confidence 789999999999999 4788888887 999996 78999999999886553
No 39
>KOG1143|consensus
Probab=98.26 E-value=2.5e-06 Score=81.75 Aligned_cols=106 Identities=21% Similarity=0.158 Sum_probs=87.6
Q ss_pred ccccccccccCCccCCCCCCCCcceEEEEEEeCCCccCcCCCCeEEEEEecceEEEEEEEeeeecccCccceeccCCccc
Q psy15204 92 PVSRSRSPATPTCTSPTPDQEPSRSVKLVKLSNVYQVGFIKELKVGMHQQSLAESAVITRLLSQVHKTSGEVIRKKPRAL 171 (232)
Q Consensus 92 ~v~rg~v~a~p~~~~~~p~~~as~~a~Iv~L~~e~~~PI~~Gy~p~Lh~~T~~v~~rI~kI~~kIDk~Tg~~~kk~pk~L 171 (232)
..+|||||+-|.- +|..-..|++.++.| =|.+-|..|++..+|+++...++.|+.|. ..+.|
T Consensus 480 ~LR~GMVl~~~~~---nP~~c~~F~A~~~lL--fHaT~i~~GFQ~TVhiGsvrqTAvi~~I~-------------~~d~l 541 (591)
T KOG1143|consen 480 SLRRGMVLAEIDH---NPPVCYEFTANLLLL--FHATYICEGFQATVHIGSVRQTAVITHID-------------DADCL 541 (591)
T ss_pred chhcceEEeecCC---CCceEEEEeeeehhh--hhhHhheecceEEEEEcceeeeeeeeeec-------------ccccc
Confidence 4799999998753 355555578888877 48889999999999999999999988872 35789
Q ss_pred CCCCeeEEEEEe-CceEEeeeccCCCceeeEEEEECCCeEEEEEEEEeeecc
Q psy15204 172 TKSMSAQVVIET-VRPMCVELYRDVKELGRFMLRVSGVTIAAGLITKVIFDQ 222 (232)
Q Consensus 172 k~GD~A~V~I~l-~kPI~vE~fs~~p~LGRFiLRD~g~TVAaGiI~~V~~k~ 222 (232)
..|+.|.|++.+ .+|=++.+.+ +.++|+ |.|-|.|.|+++.+-.
T Consensus 542 rtg~~AvV~f~F~~hPEyir~G~------~ilfRe-G~tKGiG~Vt~Vfp~t 586 (591)
T KOG1143|consen 542 RTGKWAVVKFCFAYHPEYIREGS------PILFRE-GKTKGIGEVTKVFPCT 586 (591)
T ss_pred cCCceEEEEEEecCCchhccCCC------eeeeec-ccccccceEEEEEecc
Confidence 999999999999 4787777776 788885 8999999999997644
No 40
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=98.03 E-value=1.8e-06 Score=65.14 Aligned_cols=48 Identities=17% Similarity=0.004 Sum_probs=42.4
Q ss_pred eeeeeecCCeEEEEecC--ceeeeccccccc-ccccccCC-CCcccccCccc
Q psy15204 17 WICLFIIPKLTIIISDA--NVKTDVSSNPSA-SAADQSFP-DTSGFAVPECI 64 (232)
Q Consensus 17 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~ 64 (232)
=+.+.+++|+.|.+.|. +.++.|+|+++| ..+++|.| |++|++++++.
T Consensus 22 v~~G~v~~gd~v~~~p~~~~~~~~V~si~~~~~~~~~a~~G~~v~l~l~~~~ 73 (87)
T cd03697 22 IERGTIKVGDEVEIVGFGETLKTTVTGIEMFRKTLDEAEAGDNVGVLLRGVK 73 (87)
T ss_pred ECCCCCccCCEEEEeCCCCCceEEEEEEEECCcCCCEECCCCEEEEEECCCC
Confidence 34678999999999986 789999999997 69999999 99999998763
No 41
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=97.95 E-value=3.9e-06 Score=63.82 Aligned_cols=49 Identities=20% Similarity=0.330 Sum_probs=44.6
Q ss_pred hheeeeeecCCeEEEEecCceeeeccccccc-ccccccCC-CCcccccCcc
Q psy15204 15 SSWICLFIIPKLTIIISDANVKTDVSSNPSA-SAADQSFP-DTSGFAVPEC 63 (232)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~ 63 (232)
-.=+.+.++.|++|.+-|.+.++.|+|+++| +..+++.+ |++|++++++
T Consensus 24 G~v~~G~i~~gd~v~i~P~~~~~~V~sI~~~~~~~~~a~aG~~v~i~l~~i 74 (91)
T cd03693 24 GRVETGVLKPGMVVTFAPAGVTGEVKSVEMHHEPLEEALPGDNVGFNVKNV 74 (91)
T ss_pred EEEecceeecCCEEEECCCCcEEEEEEEEECCcCcCEECCCCEEEEEECCC
Confidence 3556789999999999999999999999997 69999999 9999999876
No 42
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=97.93 E-value=6.6e-06 Score=61.36 Aligned_cols=51 Identities=8% Similarity=-0.024 Sum_probs=46.1
Q ss_pred hhheeeeeecCCeEEEEecCceeeeccccccc-ccccccCC-CCcccccCccc
Q psy15204 14 WSSWICLFIIPKLTIIISDANVKTDVSSNPSA-SAADQSFP-DTSGFAVPECI 64 (232)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~ 64 (232)
.-..+.+.+++||+|.+.|.+.++.|+|+++| ..++++.+ |++|++++++.
T Consensus 18 ~G~v~~G~i~~G~~v~i~P~~~~~~V~si~~~~~~~~~a~aGd~v~l~l~~i~ 70 (82)
T cd04089 18 LGKVESGTIKKGDKLLVMPNKTQVEVLSIYNEDVEVRYARPGENVRLRLKGIE 70 (82)
T ss_pred EEEEeeeEEecCCEEEEeCCCcEEEEEEEEECCEECCEECCCCEEEEEecCCC
Confidence 34678899999999999999999999999997 69999999 99999998763
No 43
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=97.91 E-value=7.3e-06 Score=61.15 Aligned_cols=52 Identities=10% Similarity=-0.038 Sum_probs=47.3
Q ss_pred chhheeeeeecCCeEEEEecCceeeeccccccc-ccccccCC-CCcccccCccc
Q psy15204 13 SWSSWICLFIIPKLTIIISDANVKTDVSSNPSA-SAADQSFP-DTSGFAVPECI 64 (232)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~ 64 (232)
.+-..+.+.+++|+.|.+.|.+.++.|+|+++| ...++|.| |++|++++++.
T Consensus 18 v~G~v~~G~i~~Gd~v~i~P~~~~~~V~si~~~~~~~~~a~aGd~v~~~l~~~~ 71 (83)
T cd03698 18 VSGKVESGSIQKGDTLLVMPSKESVEVKSIYVDDEEVDYAVAGENVRLKLKGID 71 (83)
T ss_pred EEEEEeeeEEeCCCEEEEeCCCcEEEEEEEEECCeECCEECCCCEEEEEECCCC
Confidence 355778899999999999999999999999997 69999999 99999998763
No 44
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.73 E-value=0.00011 Score=70.97 Aligned_cols=104 Identities=14% Similarity=0.064 Sum_probs=80.0
Q ss_pred eeecCCeEEEEecCceeeeccccccc-ccccccCC-CCcccccCcccCCCCccccccCCCCCCCCCCCCCCCCccccccc
Q psy15204 20 LFIIPKLTIIISDANVKTDVSSNPSA-SAADQSFP-DTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPSTPVSRSR 97 (232)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~rg~ 97 (232)
+-.+-||.+.++|.|-..+|+|++.| +-.+|+.- +.+|+|.+++. ++ .++||+
T Consensus 196 G~V~v~D~L~l~p~~k~v~VRsIq~~d~d~~~a~AG~RVgLaL~~v~----~e---------------------ei~RG~ 250 (447)
T COG3276 196 GEVKVGDKLYLSPINKEVRVRSIQAHDVDVEEAKAGQRVGLALKGVE----KE---------------------EIERGD 250 (447)
T ss_pred eeEEECCEEEEecCCCeEEEEeeeecCcchhhccccceeeeecCCCC----HH---------------------Hhhccc
Confidence 55788999999999999999999999 68888888 99999999983 22 356777
Q ss_pred ccccCCccCCCCCCCCcceEEEEEEeCCCccCcCCCCeEEEEEecceEEEEEEEee
Q psy15204 98 SPATPTCTSPTPDQEPSRSVKLVKLSNVYQVGFIKELKVGMHQQSLAESAVITRLL 153 (232)
Q Consensus 98 v~a~p~~~~~~p~~~as~~a~Iv~L~~e~~~PI~~Gy~p~Lh~~T~~v~~rI~kI~ 153 (232)
.|.+|..-.+.. .+.+.+-|.. --..++.++..+.+|++...++|++..+.
T Consensus 251 ~L~~~~~~~v~~----~~~~~~~i~~-~~~~~l~~~~~~hi~~g~~~~~~~i~~l~ 301 (447)
T COG3276 251 WLLKPEPLEVTT----RLIVELEIDP-LFKKTLKQGQPVHIHVGLRSVTGRIVPLE 301 (447)
T ss_pred EeccCCCCCcce----EEEEEEEecc-ccccccCCCceEEEEEeccccceEeeecc
Confidence 777776543211 1223233221 23688999999999999999999999774
No 45
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=97.68 E-value=2.3e-05 Score=58.23 Aligned_cols=52 Identities=10% Similarity=-0.042 Sum_probs=46.9
Q ss_pred chhheeeeeecCCeEEEEecCceeeeccccccc-ccccccCC-CCcccccCccc
Q psy15204 13 SWSSWICLFIIPKLTIIISDANVKTDVSSNPSA-SAADQSFP-DTSGFAVPECI 64 (232)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~ 64 (232)
.+-..+.+.+++|+++.+.|.+.++.|+|++++ ..++++.| |++|++++++.
T Consensus 18 v~G~v~sG~i~~g~~v~~~p~~~~~~V~sI~~~~~~~~~a~aGd~v~i~l~~~~ 71 (83)
T cd03696 18 VTGTVLSGSVKVGDKVEILPLGEETRVRSIQVHGKDVEEAKAGDRVALNLTGVD 71 (83)
T ss_pred EEEEEeecEEeCCCEEEECCCCceEEEEEEEECCcCcCEEcCCCEEEEEEcCCC
Confidence 355778999999999999999999999999996 68899999 99999998763
No 46
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=97.66 E-value=3.1e-05 Score=57.94 Aligned_cols=49 Identities=8% Similarity=-0.009 Sum_probs=44.0
Q ss_pred chhheeeeeecCCeEEEEecCceeeeccccccc-ccccccCC-CCcccccC
Q psy15204 13 SWSSWICLFIIPKLTIIISDANVKTDVSSNPSA-SAADQSFP-DTSGFAVP 61 (232)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~ 61 (232)
.+-.=+.+.+++|++|.+.|.+.+++|+|+++| +.++++.| ||+|++++
T Consensus 18 v~Gkv~~G~v~~Gd~v~~~P~~~~~~V~si~~~~~~~~~a~aGd~v~l~l~ 68 (81)
T cd03695 18 YAGTIASGSIRVGDEVVVLPSGKTSRVKSIETFDGELDEAGAGESVTLTLE 68 (81)
T ss_pred EEEEEccceEECCCEEEEcCCCCeEEEEEEEECCcEeCEEcCCCEEEEEEC
Confidence 344567789999999999999999999999997 69999999 99999885
No 47
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=97.39 E-value=9.6e-05 Score=55.81 Aligned_cols=49 Identities=12% Similarity=-0.020 Sum_probs=44.0
Q ss_pred heeeeeecCCeEEEEecCc----eeeeccccccc-ccccccCC-CCcccccCccc
Q psy15204 16 SWICLFIIPKLTIIISDAN----VKTDVSSNPSA-SAADQSFP-DTSGFAVPECI 64 (232)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~ 64 (232)
.=+.+.++||+.+.+-|++ .++.|+|+++| ..+++|.| |+++++++++.
T Consensus 21 ~v~~G~v~~g~~v~~~P~~~g~~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~ 75 (87)
T cd03694 21 TVSKGVIRLGDTLLLGPDQDGSFRPVTVKSIHRNRSPVRVVRAGQSASLALKKID 75 (87)
T ss_pred EEecCEEeCCCEEEECCCCCCCEeEEEEEEEEECCeECCEECCCCEEEEEEcCCC
Confidence 4567899999999999984 89999999998 69999999 99999998874
No 48
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=93.21 E-value=0.072 Score=39.95 Aligned_cols=47 Identities=9% Similarity=-0.044 Sum_probs=42.8
Q ss_pred eeeeeecCCeEEEEecCc---eeeeccccccc-ccccccCC-CCcccccCcc
Q psy15204 17 WICLFIIPKLTIIISDAN---VKTDVSSNPSA-SAADQSFP-DTSGFAVPEC 63 (232)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~ 63 (232)
=+.+.+++|+.|.+-|.+ .+..|+|+..| +...++.| ++.|..++++
T Consensus 22 V~~G~l~~g~~v~vlr~~~~~~~g~i~sl~~~~~~v~~a~~G~ecgi~l~~~ 73 (84)
T cd03692 22 VTDGKIKRNAKVRVLRNGEVIYEGKISSLKRFKDDVKEVKKGYECGITLENF 73 (84)
T ss_pred EEECEEeCCCEEEEEcCCCEEEEEEEEEEEEcCcccCEECCCCEEEEEEeCc
Confidence 357889999999999999 89999999997 79999999 9999999876
No 49
>PF09173 eIF2_C: Initiation factor eIF2 gamma, C terminal; InterPro: IPR015256 This entry represents a domain which is found in the initiation factors eIF2 and EF-Tu, adopting a beta barrel structure with Greek key topology. It is required for formation of the ternary complex with GTP and initiator tRNA []. ; PDB: 1S0U_A 1KK1_A 1KK0_A 1KK2_A 1KJZ_A 1KK3_A 2D74_A 2DCU_A 3P3M_A 3V11_A ....
Probab=93.10 E-value=0.78 Score=35.56 Aligned_cols=61 Identities=20% Similarity=0.209 Sum_probs=43.3
Q ss_pred ccCcCCCCeEEEEEecceEEEEEEEeeeecccCccceeccCCcccCCCCeeEEEEEeCceEEeeeccCCCceeeEEEEE-
Q psy15204 127 QVGFIKELKVGMHQQSLAESAVITRLLSQVHKTSGEVIRKKPRALTKSMSAQVVIETVRPMCVELYRDVKELGRFMLRV- 205 (232)
Q Consensus 127 ~~PI~~Gy~p~Lh~~T~~v~~rI~kI~~kIDk~Tg~~~kk~pk~Lk~GD~A~V~I~l~kPI~vE~fs~~p~LGRFiLRD- 205 (232)
-.||..|-..++.++|+.+.|+|.++. +| .+++.+.+|+|.+..+ |.+|-.
T Consensus 24 v~~i~~~E~LmlnIGsatt~G~V~~~k--------------------~d--~~~v~L~~Pvc~~~g~------rvaiSRr 75 (88)
T PF09173_consen 24 VEPIKKGEVLMLNIGSATTGGVVTSVK--------------------KD--MAEVELKKPVCAEKGE------RVAISRR 75 (88)
T ss_dssp -----TTEEEEEEETTEEEEEEEEEEE--------------------TT--EEEEEEEEEEE-STTS------EEEEEEE
T ss_pred cccCCCCCEEEEEEccccccEEEEEEE--------------------CC--EEEEEecCCeEcCcCC------eeeeehh
Confidence 368999999999999999999999873 12 3566789999999998 877732
Q ss_pred -CC--CeEEEEEE
Q psy15204 206 -SG--VTIAAGLI 215 (232)
Q Consensus 206 -~g--~TVAaGiI 215 (232)
++ +-+|.|.|
T Consensus 76 i~~rWRLIG~G~I 88 (88)
T PF09173_consen 76 IGNRWRLIGWGII 88 (88)
T ss_dssp ETTSEEEEEEEEE
T ss_pred ccCeEEEEEEEeC
Confidence 33 37788875
No 50
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=92.20 E-value=0.17 Score=41.03 Aligned_cols=65 Identities=17% Similarity=0.149 Sum_probs=48.4
Q ss_pred eeeeeecCCeEEEEecC------------ceeeeccccccc-ccccccCC-CCcccccCcccCCCCccccccCCCCCCCC
Q psy15204 17 WICLFIIPKLTIIISDA------------NVKTDVSSNPSA-SAADQSFP-DTSGFAVPECIPTKTPTQKKLGPSSSTPV 82 (232)
Q Consensus 17 ~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (232)
-+.+.+|-|+.|-|-|. -++|.|.|++|. ..+++|.| |++|-.- +|-|+-
T Consensus 35 i~~G~lkvgdeIEIrpg~~~~~~~~~~~~pi~T~I~sl~~~~~~l~~a~pGgliGvgT------------~Ldpsl---- 98 (113)
T cd03688 35 LLQGVLKVGDEIEIRPGIVVKDEGKIKCRPIFTKIVSLKAENNDLQEAVPGGLIGVGT------------KLDPTL---- 98 (113)
T ss_pred EEEEEEeCCCEEEEeeceeeecCCCeeEEEEEEEEEEEEecCccccEEeCCCeEEEcc------------ccCccc----
Confidence 45678899999977754 268999999995 69999999 9998531 444442
Q ss_pred CCCCCCCCcccccccccccCC
Q psy15204 83 TPRSQSPSTPVSRSRSPATPT 103 (232)
Q Consensus 83 ~~~~~~~~~~v~rg~v~a~p~ 103 (232)
|- .-.-||||+++||
T Consensus 99 tk------~D~l~GqV~g~pG 113 (113)
T cd03688 99 TK------ADRLVGQVVGEPG 113 (113)
T ss_pred cc------cceeeEEEeecCC
Confidence 11 1357999999986
No 51
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=90.48 E-value=5.6 Score=38.34 Aligned_cols=149 Identities=16% Similarity=0.188 Sum_probs=97.3
Q ss_pred heeeeeecCCeEEEEecC------------ceeeeccccccc-ccccccCC-CCcccccCcccCCCCccccccCCCCCCC
Q psy15204 16 SWICLFIIPKLTIIISDA------------NVKTDVSSNPSA-SAADQSFP-DTSGFAVPECIPTKTPTQKKLGPSSSTP 81 (232)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (232)
|-..+.++.||-|-+.|- +++|+|.|+.-- .-+++|-| --+|--- +|-|.-
T Consensus 240 sl~~G~l~vGDEIEIrPGi~v~k~~k~~~~pi~T~i~Sl~ag~~~~~ea~PGGLvgvGT------------~lDP~l--- 304 (415)
T COG5257 240 SLVQGVLRVGDEIEIRPGIVVEKGGKTVWEPITTEIVSLQAGGEDVEEARPGGLVGVGT------------KLDPTL--- 304 (415)
T ss_pred eeeeeeEecCCeEEecCCeEeecCCceEEEEeeEEEEEEEeCCeeeeeccCCceEEEec------------ccCcch---
Confidence 446788888888888874 467888888774 68888888 5554321 222221
Q ss_pred CCCCCCCCCcccccccccccCCccCCCCCCCCcceEEEEEEe------C-CCccCcCCCCeEEEEEecceEEEEEEEeee
Q psy15204 82 VTPRSQSPSTPVSRSRSPATPTCTSPTPDQEPSRSVKLVKLS------N-VYQVGFIKELKVGMHQQSLAESAVITRLLS 154 (232)
Q Consensus 82 ~~~~~~~~~~~v~rg~v~a~p~~~~~~p~~~as~~a~Iv~L~------~-e~~~PI~~Gy~p~Lh~~T~~v~~rI~kI~~ 154 (232)
--++. =-|+|+.+||..-+ ..-++++..--|. + ..-.||+.|-..+|.++|+.+-+.|.....
T Consensus 305 tKaD~-------L~G~V~G~pG~lPp---v~~~~~ie~~LL~RvvG~~~e~kvepik~~E~Lml~VGtatT~GvV~~~k~ 374 (415)
T COG5257 305 TKADA-------LVGQVVGKPGTLPP---VWTSIRIEYHLLERVVGTKEELKVEPIKTNEVLMLNVGTATTVGVVTSAKK 374 (415)
T ss_pred hhhhh-------hccccccCCCCCCC---ceEEEEEEeeehhhhhCcccccccccccCCCeEEEEeecceeEEEEEEecC
Confidence 00111 13778888887642 2233333322221 1 124589999999999999999999887521
Q ss_pred ecccCccceeccCCcccCCCCeeEEEEEeCceEEeeeccCCCceeeEEEEE--C--CCeEEEEEEEE
Q psy15204 155 QVHKTSGEVIRKKPRALTKSMSAQVVIETVRPMCVELYRDVKELGRFMLRV--S--GVTIAAGLITK 217 (232)
Q Consensus 155 kIDk~Tg~~~kk~pk~Lk~GD~A~V~I~l~kPI~vE~fs~~p~LGRFiLRD--~--g~TVAaGiI~~ 217 (232)
-++++.+.+|+|.|..+ |.+|-. + =+-+|.|+|+.
T Consensus 375 ----------------------d~~ev~Lk~Pvcae~g~------rvaisRri~~rWRLIG~G~ik~ 413 (415)
T COG5257 375 ----------------------DEIEVKLKRPVCAEIGE------RVAISRRIGNRWRLIGYGTIKE 413 (415)
T ss_pred ----------------------ceEEEEeccceecCCCC------EEEEEeeecceEEEEeEEEEec
Confidence 14677889999999988 777733 2 34789998864
No 52
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=79.51 E-value=0.81 Score=32.45 Aligned_cols=46 Identities=7% Similarity=-0.078 Sum_probs=36.7
Q ss_pred eeeeecCCeEEEEec--Cce---eeeccccccc-ccccccCC-CCcccccCcc
Q psy15204 18 ICLFIIPKLTIIISD--ANV---KTDVSSNPSA-SAADQSFP-DTSGFAVPEC 63 (232)
Q Consensus 18 ~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~ 63 (232)
..+.|++||+|.+.| ..- ...|+++.++ ....++.+ ++.|+.+.-.
T Consensus 9 ~sG~l~~gd~v~~~~~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~ 61 (74)
T PF03144_consen 9 YSGTLKKGDKVRVLPNGTGKKGQVVKIKSIFMFNGDVQEAVAGANAGDIVAII 61 (74)
T ss_dssp EESEEETTEEEEEESTTTTEECEEEEEEEEEETTEEESEEETTEEEEEEEESS
T ss_pred EEeEEcCCCEEEECccCCcceeeeeecccccccccCccEeCCceeeEEEEEEc
Confidence 357899999999966 212 3899999997 57888899 9999887655
No 53
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=71.13 E-value=3.9 Score=27.68 Aligned_cols=50 Identities=14% Similarity=0.097 Sum_probs=37.6
Q ss_pred chhheeeeeecCCeEEEEec--Cceeeeccccccc-ccccccCC-CCcccccCc
Q psy15204 13 SWSSWICLFIIPKLTIIISD--ANVKTDVSSNPSA-SAADQSFP-DTSGFAVPE 62 (232)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~ 62 (232)
.|-.=..+.|++|+.+.+.+ .+.+..|+++..+ .-.+++.+ |..|....+
T Consensus 18 ~~~rv~~G~l~~g~~v~~~~~~~~~~~~i~~i~~~~~~~~~~~aG~~~~~~~~~ 71 (83)
T cd01342 18 ATGRVESGTLKKGDKVRVGPGGGGVKGKVKSLKRFKGEVDEAVAGDIVGIVLKD 71 (83)
T ss_pred EEEEEeeCEEecCCEEEEecCCceeEEEEeEeEecCceeceecCCCEEEEEEcc
Confidence 34455668999999999999 8889999999876 45566666 766665543
No 54
>COG4043 Preprotein translocase subunit Sec61beta [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.56 E-value=2.3 Score=34.13 Aligned_cols=27 Identities=22% Similarity=0.212 Sum_probs=22.4
Q ss_pred eecCCeEEEEecCceeeeccccccccc
Q psy15204 21 FIIPKLTIIISDANVKTDVSSNPSASA 47 (232)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (232)
-|||||+|+|.-.-++++|..+-.|+.
T Consensus 33 ~ik~GD~IiF~~~~l~v~V~~vr~Y~t 59 (111)
T COG4043 33 QIKPGDKIIFNGDKLKVEVIDVRVYDT 59 (111)
T ss_pred CCCCCCEEEEcCCeeEEEEEEEeehhH
Confidence 489999999997788888888777643
No 55
>KOG0461|consensus
Probab=58.41 E-value=19 Score=35.19 Aligned_cols=141 Identities=16% Similarity=0.151 Sum_probs=84.2
Q ss_pred eeeeecCCeEEEEecCceeeecccccc-cccccccCC-CCcccccCcccCCCCccccccCCCCCCCCCCCCCCCCccccc
Q psy15204 18 ICLFIIPKLTIIISDANVKTDVSSNPS-ASAADQSFP-DTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPSTPVSR 95 (232)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r 95 (232)
+.+.+.-+..|.|.--|.+-.|+|.+| |+...++-- |..||-|...-+ |-+.+|-
T Consensus 225 l~G~~~ln~~iE~PAL~e~rkVKslqmf~~~vtsa~~GdR~g~cVtqFd~------klleRgi----------------- 281 (522)
T KOG0461|consen 225 LRGVLRLNTEIEFPALNEKRKVKSLQMFKQRVTSAAAGDRAGFCVTQFDE------KLLERGI----------------- 281 (522)
T ss_pred EEeEEecCcEEeecccchhhhhhhHHHHhhhhhhhhcccceeeeeeccCH------HHHhccc-----------------
Confidence 346777889999999999999999999 578888887 999999986654 4454442
Q ss_pred ccccccCCccCCCCCCCCcceEEEEEEeCC--CccCcCCCCeEEEEEecceEEEEEEEeeeecccCc-----------cc
Q psy15204 96 SRSPATPTCTSPTPDQEPSRSVKLVKLSNV--YQVGFIKELKVGMHQQSLAESAVITRLLSQVHKTS-----------GE 162 (232)
Q Consensus 96 g~v~a~p~~~~~~p~~~as~~a~Iv~L~~e--~~~PI~~Gy~p~Lh~~T~~v~~rI~kI~~kIDk~T-----------g~ 162 (232)
.+.||+.+. -.+.+..+..= -..+|..-.+.-+-++...+-+++.-+. -.|..+ ++
T Consensus 282 ---~~~pg~Lk~-------~~avl~~vepI~yfr~~i~sk~K~Hi~VgheTVMa~~~ff~-d~d~~~~tf~~~kEye~~E 350 (522)
T KOG0461|consen 282 ---CGPPGTLKS-------TKAVLATVEPIQYFRKSINSKSKIHIAVGHETVMAECQFFK-DTDGTTSTFQLDKEYENGE 350 (522)
T ss_pred ---cCCCcccce-------eeeeeEeecchHHHhhhhhhcceEEEEehhhhhhhheEEee-ccCCcccccccchhhhccc
Confidence 355666653 11222333100 1233333333222222223333333222 112111 11
Q ss_pred eeccCCcccCCCCeeEEEEEeCceEEeeecc
Q psy15204 163 VIRKKPRALTKSMSAQVVIETVRPMCVELYR 193 (232)
Q Consensus 163 ~~kk~pk~Lk~GD~A~V~I~l~kPI~vE~fs 193 (232)
. .--|..+.++|..-+-+++.+|+.+-.|+
T Consensus 351 ~-d~~Pa~~~~~~~~~aL~~FEkpv~~P~~s 380 (522)
T KOG0461|consen 351 F-DMLPALLAPCDVIQALFSFEKPVFLPEYS 380 (522)
T ss_pred c-ccChhhcCCchheeeeeeecccccCcccc
Confidence 0 11356788899999999999999888765
No 56
>cd06555 ASCH_PF0470_like ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=49.98 E-value=11 Score=30.30 Aligned_cols=43 Identities=14% Similarity=0.015 Sum_probs=33.4
Q ss_pred eecCCeEEEEec----Cceeeeccccccc---ccccccCC-CCcccccCcc
Q psy15204 21 FIIPKLTIIISD----ANVKTDVSSNPSA---SAADQSFP-DTSGFAVPEC 63 (232)
Q Consensus 21 ~~~~~~~~~~~~----~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~ 63 (232)
-++|||+|+|.. .-+.++|..+-.+ +++-++.+ .++|+.+..+
T Consensus 31 ~ikvGD~I~f~~~~~~~~l~v~V~~i~~Y~sF~~ll~~e~~~~~~~~~~s~ 81 (109)
T cd06555 31 QIKVGDKILFNDLDTGQQLLVKVVDIRKYDSFRELLEEEGLEKVGPGVDSI 81 (109)
T ss_pred cCCCCCEEEEEEcCCCcEEEEEEEEEEecCCHHHHHHhcCHhhcCCCCCcH
Confidence 489999999976 3578888777765 58888888 8888886543
No 57
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=47.42 E-value=12 Score=28.42 Aligned_cols=16 Identities=31% Similarity=0.463 Sum_probs=13.8
Q ss_pred eeeecCCeEEEEecCc
Q psy15204 19 CLFIIPKLTIIISDAN 34 (232)
Q Consensus 19 ~~~~~~~~~~~~~~~~ 34 (232)
-|.+||||+||+.+.+
T Consensus 3 FL~Vk~Gd~ViV~~~~ 18 (75)
T PF11302_consen 3 FLSVKPGDTVIVQDEQ 18 (75)
T ss_pred ccccCCCCEEEEecCc
Confidence 3678999999999866
No 58
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=44.33 E-value=91 Score=27.44 Aligned_cols=96 Identities=11% Similarity=0.003 Sum_probs=57.9
Q ss_pred CCCCCCCCCcccccccccccCCccCCCCCCCCcceEEEEEEeCCCccCcCCCCeEEEEE---ecceEEEEEEEeeeeccc
Q psy15204 82 VTPRSQSPSTPVSRSRSPATPTCTSPTPDQEPSRSVKLVKLSNVYQVGFIKELKVGMHQ---QSLAESAVITRLLSQVHK 158 (232)
Q Consensus 82 ~~~~~~~~~~~v~rg~v~a~p~~~~~~p~~~as~~a~Iv~L~~e~~~PI~~Gy~p~Lh~---~T~~v~~rI~kI~~kIDk 158 (232)
|+...-.+...|..|+.++.-.... .+.+.+.+-. +.-.-+..|.+..+++ ......++|..|....|.
T Consensus 145 V~~~~~~~G~~v~~g~~l~~i~~~~-------~~~v~~~v~~-~~~~~l~~G~~v~v~~~~~~~~~~~g~I~~I~~~~~~ 216 (322)
T TIGR01730 145 IGRRLVEVGAYVTAGQTLATIVDLD-------PLEADFSVPE-RDLPQLRRGQTLTVELDALPGEEFKGKLRFIDPRVDS 216 (322)
T ss_pred EEEEEcCCCceeCCCCcEEEEEcCC-------cEEEEEEeCH-HHHHHhhCCCeEEEEEeCCCCceEeEEEEEEeccccC
Confidence 4444444555666666555332111 2334333222 3345688999988887 345688999998877775
Q ss_pred Ccccee-----ccCCcccCCCCeeEEEEEeCc
Q psy15204 159 TSGEVI-----RKKPRALTKSMSAQVVIETVR 185 (232)
Q Consensus 159 ~Tg~~~-----kk~pk~Lk~GD~A~V~I~l~k 185 (232)
.++... ......+.+|+.+.+.|....
T Consensus 217 ~~~~~~v~~~~~~~~~~l~~G~~v~v~i~~~~ 248 (322)
T TIGR01730 217 GTGTVRVRATFPNPDGRLLPGMFGRVTISLKV 248 (322)
T ss_pred CCCeEEEEEEEcCCCCcCCCCCEEEEEEecCc
Confidence 443211 122456999999999999854
No 59
>PF15182 OTOS: Otospiralin
Probab=42.69 E-value=8.1 Score=28.63 Aligned_cols=21 Identities=43% Similarity=0.575 Sum_probs=18.4
Q ss_pred ccccccccccCC--CCcccccCc
Q psy15204 42 NPSASAADQSFP--DTSGFAVPE 62 (232)
Q Consensus 42 ~~~~~~~~~~~~--~~~~~~~~~ 62 (232)
++|+.+.+..+| |+.||+|+.
T Consensus 44 ndmARtfFAh~plG~tLGy~~p~ 66 (69)
T PF15182_consen 44 NDMARTFFAHFPLGDTLGYHVPY 66 (69)
T ss_pred HHHHHHHHhhCcccccccccCcc
Confidence 578888999999 999999985
No 60
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=41.82 E-value=1.1e+02 Score=26.23 Aligned_cols=100 Identities=15% Similarity=0.030 Sum_probs=58.4
Q ss_pred CCCCCCCCCCCCCCCcccccccccccCCccCCCCCCCCcceEEEEEEeCCCccCcCCCCeEEEEEecc-eEEEEEEEeee
Q psy15204 76 PSSSTPVTPRSQSPSTPVSRSRSPATPTCTSPTPDQEPSRSVKLVKLSNVYQVGFIKELKVGMHQQSL-AESAVITRLLS 154 (232)
Q Consensus 76 ~~~~~~~~~~~~~~~~~v~rg~v~a~p~~~~~~p~~~as~~a~Iv~L~~e~~~PI~~Gy~p~Lh~~T~-~v~~rI~kI~~ 154 (232)
|-+|. |+-....+...|..|..++.-.- + ..+.+.+. +++..-.-+..|.+..+++... ...++|..|..
T Consensus 94 P~dG~-V~~~~~~~G~~v~~g~~l~~i~~----~---~~~~i~~~-v~~~~~~~i~~g~~v~i~~~~~~~~~g~v~~I~~ 164 (265)
T TIGR00999 94 PFDGY-ITQKSVTLGDYVAPQAELFRVAD----L---GAVWVEAE-VPAKDVSRIRKGSKATVLLENGRPLPARVDYVGP 164 (265)
T ss_pred CCCeE-EEEEEcCCCCEeCCCCceEEEEc----C---CcEEEEEE-ECHHHHhhCCCCCEEEEEECCCCEEEEEEEEEcc
Confidence 44444 44444444555555544333211 1 12334333 3322344588899988887543 47899999988
Q ss_pred ecccCcccee-----ccCCcccCCCCeeEEEEEeC
Q psy15204 155 QVHKTSGEVI-----RKKPRALTKSMSAQVVIETV 184 (232)
Q Consensus 155 kIDk~Tg~~~-----kk~pk~Lk~GD~A~V~I~l~ 184 (232)
.+|..+.... ......+.+|+.+.+.|...
T Consensus 165 ~~~~~~~~~~v~~~~~~~~~~l~~G~~v~v~i~~~ 199 (265)
T TIGR00999 165 EVDGSSRTAKVRVLIKNENLTLKPGLFVQVRVETK 199 (265)
T ss_pred ccCCCCceEEEEEEEeCCCCccCCCCEEEEEEecC
Confidence 8887664311 12233689999999999885
No 61
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=39.96 E-value=1.7e+02 Score=26.63 Aligned_cols=32 Identities=9% Similarity=-0.168 Sum_probs=23.9
Q ss_pred CccCcCCCCeEEEEEec---ceEEEEEEEeeeecc
Q psy15204 126 YQVGFIKELKVGMHQQS---LAESAVITRLLSQVH 157 (232)
Q Consensus 126 ~~~PI~~Gy~p~Lh~~T---~~v~~rI~kI~~kID 157 (232)
.-.-+.+|.+..++..+ ....++|..|....+
T Consensus 250 ~~~~i~~Gq~v~v~~~~~~~~~~~g~V~~Is~~~~ 284 (331)
T PRK03598 250 NLGQAQPGRKVLLYTDGRPDKPYHGQIGFVSPTAE 284 (331)
T ss_pred HHhhCCCCCEEEEEEcCCCCcEEEEEEEEEcCccc
Confidence 34568899999888764 467899998876544
No 62
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=39.74 E-value=38 Score=34.23 Aligned_cols=46 Identities=13% Similarity=0.081 Sum_probs=37.7
Q ss_pred eeeeecCCeEEEEecCceeeecccccccc----cccccCCCCcccccCcc
Q psy15204 18 ICLFIIPKLTIIISDANVKTDVSSNPSAS----AADQSFPDTSGFAVPEC 63 (232)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 63 (232)
..+.|++||+|.+.+.+.+..|+++.+++ ..+++.+-.+|+.++++
T Consensus 212 ~sG~lk~Gd~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdIg~i~~~~ 261 (595)
T TIGR01393 212 FEGTIKPGDKIRFMSTGKEYEVDEVGVFTPKLTKTDELSAGEVGYIIAGI 261 (595)
T ss_pred ECCEEecCCEEEEecCCCeeEEeEEEEecCCceECCEEcCCCEEEEeccc
Confidence 35789999999999999999999998742 55788883399988765
No 63
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=35.13 E-value=2.4e+02 Score=25.74 Aligned_cols=84 Identities=8% Similarity=-0.050 Sum_probs=52.0
Q ss_pred ccCcCCCCeEEEEEec--ceEEEEEEEeeeecccCccce-------eccCCcccCCCCeeEEEEEeCceEEeeeccCCC-
Q psy15204 127 QVGFIKELKVGMHQQS--LAESAVITRLLSQVHKTSGEV-------IRKKPRALTKSMSAQVVIETVRPMCVELYRDVK- 196 (232)
Q Consensus 127 ~~PI~~Gy~p~Lh~~T--~~v~~rI~kI~~kIDk~Tg~~-------~kk~pk~Lk~GD~A~V~I~l~kPI~vE~fs~~p- 196 (232)
-..+..|.+..+.... ....++|..|...+|..++.. ...+...++.++...|++.+..+- . .-.|
T Consensus 202 i~~v~~G~~v~v~~~~~~~~~~G~V~~I~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~Vri~l~~~~---~-~l~p~ 277 (310)
T PRK10559 202 LEGVRPGYRAEITPLGSNKVLKGTVDSVAAGVTNSSSTRDSKGMATIDSNLEWVRLAQRVPVRIRLDNQQ---G-NLYPA 277 (310)
T ss_pred hhhCCCCCEEEEEEeCCCcEEEEEEEEECccccccccCCCcccCCCcCCCCceEeEEEEeeEEEEECCCC---c-ccccC
Confidence 4458899988876532 457899999988888766421 112233456667888888886651 1 1111
Q ss_pred c-eeeEEEEECCCeEEEEEE
Q psy15204 197 E-LGRFMLRVSGVTIAAGLI 215 (232)
Q Consensus 197 ~-LGRFiLRD~g~TVAaGiI 215 (232)
. .++.. +..++|.+.+++
T Consensus 278 Gm~a~V~-i~~~~~~~~~~~ 296 (310)
T PRK10559 278 GTTATVV-ITGKQDRDASQD 296 (310)
T ss_pred CCEEEEE-EEcCCCCccccc
Confidence 2 23333 356778888777
No 64
>PRK04004 translation initiation factor IF-2; Validated
Probab=33.18 E-value=38 Score=34.22 Aligned_cols=47 Identities=17% Similarity=0.111 Sum_probs=36.0
Q ss_pred eeeeecCCeEEEEecCc--eeeecccccccccccccC-CCCcccccCccc
Q psy15204 18 ICLFIIPKLTIIISDAN--VKTDVSSNPSASAADQSF-PDTSGFAVPECI 64 (232)
Q Consensus 18 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 64 (232)
..+.|++||.|.+.|.+ +++.|+++.++..+.|+- |..-|=+++++.
T Consensus 255 ~~GtL~~Gd~vv~~~~~~~i~~kVr~l~~~~~~~e~~~~~~~~~~~~~~~ 304 (586)
T PRK04004 255 YDGTLRKGDTIVVGGKDGPIVTKVRALLKPRPLDEMRDPEDKFKPVDEVV 304 (586)
T ss_pred EcCEEECCCEEEECcCCCcceEEEEEEecCcchhhccccccccccccccC
Confidence 35789999999999988 678999999987777777 444445555543
No 65
>PRK05433 GTP-binding protein LepA; Provisional
Probab=29.67 E-value=40 Score=34.14 Aligned_cols=45 Identities=9% Similarity=0.000 Sum_probs=37.5
Q ss_pred eeeecCCeEEEEecCceeeeccccccc----ccccccCCCCcccccCcc
Q psy15204 19 CLFIIPKLTIIISDANVKTDVSSNPSA----SAADQSFPDTSGFAVPEC 63 (232)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 63 (232)
.+.|++|+.|.+.|.+.+..|+++.++ ...+++.+-.+|+.++++
T Consensus 217 sG~Lk~Gd~i~~~~~~~~~~V~~i~~~~~~~~~v~~~~aGdIg~i~~~i 265 (600)
T PRK05433 217 DGTLKKGDKIKMMSTGKEYEVDEVGVFTPKMVPVDELSAGEVGYIIAGI 265 (600)
T ss_pred cCEEecCCEEEEecCCceEEEEEeeccCCCceECcEEcCCCEEEEeccc
Confidence 578999999999999999999998863 467888883399988765
No 66
>COG1471 RPS4A Ribosomal protein S4E [Translation, ribosomal structure and biogenesis]
Probab=25.76 E-value=3.3e+02 Score=25.01 Aligned_cols=57 Identities=11% Similarity=0.209 Sum_probs=37.3
Q ss_pred cccCCCCeeEEEEEeCceEEeeeccCCCceeeEEEEECCCeEE-EEEEEEeeeccCCccccc
Q psy15204 169 RALTKSMSAQVVIETVRPMCVELYRDVKELGRFMLRVSGVTIA-AGLITKVIFDQCGSTNLY 229 (232)
Q Consensus 169 k~Lk~GD~A~V~I~l~kPI~vE~fs~~p~LGRFiLRD~g~TVA-aGiI~~V~~k~~G~~~~~ 229 (232)
+..+.||...+.+..++=+..=+|+ .|..++.-+|+-+| .|.|.++.....+..++.
T Consensus 151 ~~~k~~Dtv~i~lp~~~I~~~i~fe----~g~~~~vtgG~h~G~~G~I~~I~~~~~~~~~~v 208 (241)
T COG1471 151 DNYKTGDTVKISLPEQKIVEHIKFE----EGALVYVTGGRHVGRVGTIVEIEIQESSKPNLV 208 (241)
T ss_pred CccccccEEEEeCCChhheeEeccC----CCcEEEEECCccccceEEEEEEEEecCCCccEE
Confidence 5677888877777665432222332 35677877777665 799998887766666554
No 67
>TIGR00170 leuC 3-isopropylmalate dehydratase, large subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. These homologs are now described by a separate model of subfamily (rather than equivalog) homology type, and the priors and cutoffs for this model have been changed to focus this equivalog family more narrowly.
Probab=24.69 E-value=31 Score=34.19 Aligned_cols=45 Identities=18% Similarity=0.236 Sum_probs=37.2
Q ss_pred eeeecCCeEEEEecCceeee---------ccccccc-----ccccccCCCCcccccCcc
Q psy15204 19 CLFIIPKLTIIISDANVKTD---------VSSNPSA-----SAADQSFPDTSGFAVPEC 63 (232)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~---------~~~~~~~-----~~~~~~~~~~~~~~~~~~ 63 (232)
.+++.|||+|+=+|+|.+|- |.+.+|. +.+...+|.++++++.+-
T Consensus 115 ~g~~~PG~~ivgtDSHT~t~GalGala~GvG~te~~~~l~tg~~~~~vPe~v~V~l~G~ 173 (465)
T TIGR00170 115 QGLTLPGMTIVCGDSHTSTHGAFGALAFGIGTSEVEHVLATQTLKQARAKTMKIEVDGK 173 (465)
T ss_pred cCcccCCceEEecCCCccccccccceEEccCHHHHHHHHhCCcEeccCCCEEEEEEEee
Confidence 36799999999999999854 7788874 466788999999998765
No 68
>PLN00036 40S ribosomal protein S4; Provisional
Probab=23.42 E-value=3.2e+02 Score=25.26 Aligned_cols=53 Identities=15% Similarity=0.238 Sum_probs=35.2
Q ss_pred ccCCCCeeEEEEEeCceEEeeeccCCCceeeEEEEECCCeE-EEEEEEEeeeccCCccc
Q psy15204 170 ALTKSMSAQVVIETVRPMCVELYRDVKELGRFMLRVSGVTI-AAGLITKVIFDQCGSTN 227 (232)
Q Consensus 170 ~Lk~GD~A~V~I~l~kPI~vE~fs~~p~LGRFiLRD~g~TV-AaGiI~~V~~k~~G~~~ 227 (232)
.++.||...+.+..++-+-.-+|+ .|..++.-+|+-+ -+|.|.++. +..|.-+
T Consensus 153 ~~k~~Dtv~i~l~~~kI~~~ikfe----~G~l~~vtgG~n~GrvG~I~~i~-~~~~~~~ 206 (261)
T PLN00036 153 LIKANDTIKIDLETNKIVDFIKFD----VGNLVMVTGGRNRGRVGVIKNRE-KHKGSFE 206 (261)
T ss_pred ccccCCEEEEeCCCCceeeEEecC----CCCEEEEECCeeceeEEEEEEEE-ecCCCCC
Confidence 578999999998777643333443 4678887776655 478888777 3435443
No 69
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A.
Probab=23.12 E-value=52 Score=25.13 Aligned_cols=45 Identities=13% Similarity=0.123 Sum_probs=34.2
Q ss_pred heeeeeecCCeEEEEecCceeeeccccccc-ccccccCC-CCcccccCcc
Q psy15204 16 SWICLFIIPKLTIIISDANVKTDVSSNPSA-SAADQSFP-DTSGFAVPEC 63 (232)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~ 63 (232)
+=+.+.++||..+ +-..-..|+|+++. ..+++|-. |-++-...+.
T Consensus 24 ~V~~G~ik~G~~l---~G~~iG~I~sIe~~~k~v~~A~~G~eVai~Ieg~ 70 (81)
T PF14578_consen 24 EVLEGIIKPGYPL---DGRKIGRIKSIEDNGKNVDEAKKGDEVAISIEGP 70 (81)
T ss_dssp EEEEEEEETT-EE---CSSCEEEEEEEEETTEEESEEETT-EEEEEEET-
T ss_pred EEeeeEEeCCCcc---CCEEEEEEEEeEECCcCccccCCCCEEEEEEeCC
Confidence 4567899999988 55557889999995 79999988 8888777664
No 70
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=23.05 E-value=3e+02 Score=26.29 Aligned_cols=57 Identities=14% Similarity=0.057 Sum_probs=41.1
Q ss_pred cCcCCCCeEEEEEec---ceEEEEEEEeeeecccCcccee----ccCCc-ccCCCCeeEEEEEeC
Q psy15204 128 VGFIKELKVGMHQQS---LAESAVITRLLSQVHKTSGEVI----RKKPR-ALTKSMSAQVVIETV 184 (232)
Q Consensus 128 ~PI~~Gy~p~Lh~~T---~~v~~rI~kI~~kIDk~Tg~~~----kk~pk-~Lk~GD~A~V~I~l~ 184 (232)
.-+..|.+..+.... ....++|..|.-.+|..|+... -+|+. .|++|+.+.+.|...
T Consensus 258 ~~i~~G~~v~v~~~~~~~~~~~g~v~~i~p~vd~~trt~~vrv~l~N~~~~L~pGm~v~v~i~~~ 322 (409)
T PRK09783 258 WLVKDASQFTLTVPARPDKTFTIRKWTLLPSVDAATRTLQLRLEVDNADEALKPGMNAWLQLNTA 322 (409)
T ss_pred HhccCCCEEEEEEecCCCCEEEEEEEEEccccCCCCcEEEEEEEEeCCCCccCCCCEEEEEEecC
Confidence 347788887776542 3467888889889998886322 13554 599999999999763
No 71
>PTZ00118 40S ribosomal protein S4; Provisional
Probab=22.85 E-value=5.3e+02 Score=23.89 Aligned_cols=53 Identities=17% Similarity=0.236 Sum_probs=34.1
Q ss_pred ccCCCCeeEEEEEeCceEEeeeccCCCceeeEEEEECCCeE-EEEEEEEeeeccCCccc
Q psy15204 170 ALTKSMSAQVVIETVRPMCVELYRDVKELGRFMLRVSGVTI-AAGLITKVIFDQCGSTN 227 (232)
Q Consensus 170 ~Lk~GD~A~V~I~l~kPI~vE~fs~~p~LGRFiLRD~g~TV-AaGiI~~V~~k~~G~~~ 227 (232)
.++.||...+.+..++=+-.-+|+ .|..++.-+|+-+ -+|.|.+ .++..|..+
T Consensus 153 ~ik~~Dtv~i~l~~~kI~~~ikfe----~G~l~~vtgG~n~GriG~I~~-~~~~~~~~~ 206 (262)
T PTZ00118 153 DVKVGDSLRLDLETGKVLEFLKFE----VGNLVMITGGHNVGRVGTIVS-KEKHPGSFD 206 (262)
T ss_pred cccCCCEEEEECCCCceeeEEecC----CCCEEEEECCeeceeEEEEEE-EEecCCCCc
Confidence 578999999988777644333443 4678887776654 4788877 333335443
No 72
>PTZ00223 40S ribosomal protein S4; Provisional
Probab=21.05 E-value=5.6e+02 Score=23.88 Aligned_cols=53 Identities=11% Similarity=0.144 Sum_probs=33.5
Q ss_pred ccCCCCeeEEEEEeCceEEeeeccCCCceeeEEEEECCCeE-EEEEEEEeeeccCCccc
Q psy15204 170 ALTKSMSAQVVIETVRPMCVELYRDVKELGRFMLRVSGVTI-AAGLITKVIFDQCGSTN 227 (232)
Q Consensus 170 ~Lk~GD~A~V~I~l~kPI~vE~fs~~p~LGRFiLRD~g~TV-AaGiI~~V~~k~~G~~~ 227 (232)
.++.||...+.+..++=+-.-+|+ .|..++.-+|+-+ -+|.|.++ .+..|.-+
T Consensus 150 ~~k~~Dtv~i~l~~~kI~~~ikfe----~G~l~~vtgG~n~GriG~I~~i-~~~~~~~~ 203 (273)
T PTZ00223 150 RTSRGDTLVYNVKEKKVVDLIKNR----NGKVVMVTGGANRGRIGEIVSI-ERHPGAFD 203 (273)
T ss_pred cccCCCEEEEECCCCeeeEEEecC----CCCEEEEECCeeceeEEEEEEE-EecCCCCC
Confidence 578999999888776522222332 3567777776644 47888877 44445443
No 73
>PRK04313 30S ribosomal protein S4e; Validated
Probab=20.79 E-value=4.7e+02 Score=23.82 Aligned_cols=55 Identities=11% Similarity=0.143 Sum_probs=35.2
Q ss_pred cccCCCCeeEEEEEeCceEEeeeccCCCceeeEEEEECCCeE-EEEEEEEeeeccCCccc
Q psy15204 169 RALTKSMSAQVVIETVRPMCVELYRDVKELGRFMLRVSGVTI-AAGLITKVIFDQCGSTN 227 (232)
Q Consensus 169 k~Lk~GD~A~V~I~l~kPI~vE~fs~~p~LGRFiLRD~g~TV-AaGiI~~V~~k~~G~~~ 227 (232)
..++.||...+.+..++=+-.-+|+ .|..++.-+|+-+ -+|.|.++.....|..+
T Consensus 149 ~~~k~~Dtv~i~l~~~kI~~~i~fe----~G~l~~itgG~n~GriG~I~~i~~~~~~~~~ 204 (237)
T PRK04313 149 DDYKTGDSLLISLPEQEIVDHIPFE----EGNLAIITGGKHVGEIGKIKEIEVTKSSKPN 204 (237)
T ss_pred cccccCCEEEEECCCCceeEEEecC----CCCEEEEECCeeeeeEEEEEEEEEccCCCCc
Confidence 4678999988888776532222332 3567777776655 47888887665544433
No 74
>COG0006 PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=20.44 E-value=53 Score=30.66 Aligned_cols=41 Identities=17% Similarity=0.292 Sum_probs=29.0
Q ss_pred cceechhhee-------eeeecCCeEEEEecCceeeecccccccccccccCCCCcccccCcccC
Q psy15204 9 GFLLSWSSWI-------CLFIIPKLTIIISDANVKTDVSSNPSASAADQSFPDTSGFAVPECIP 65 (232)
Q Consensus 9 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (232)
|+.+.|.+|. ...|+|||++.++|- --.|.-.|..+.+...
T Consensus 317 G~~l~vhE~p~~~~~~~~~~L~~GMv~t~Epg----------------~y~~g~~GirIEd~vl 364 (384)
T COG0006 317 GFVLDVHEHPQYLSPGSDTTLEPGMVFSIEPG----------------IYIPGGGGVRIEDTVL 364 (384)
T ss_pred CCCcccCcCccccCCCCCccccCCcEEEeccc----------------cccCCCceEEEEEEEE
Confidence 4667777777 467899999999996 3345666666665544
Done!