Query psy15204
Match_columns 232
No_of_seqs 128 out of 1418
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 23:21:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15204.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15204hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3e1y_E Eukaryotic peptide chai 100.0 9.7E-37 3.3E-41 261.2 13.3 176 16-221 25-202 (204)
2 3j2k_7 ERF3, eukaryotic polype 100.0 2.4E-33 8.3E-38 262.6 17.2 172 18-219 265-438 (439)
3 3p26_A Elongation factor 1 alp 100.0 1.1E-30 3.8E-35 246.3 16.1 174 17-220 291-477 (483)
4 1f60_A Elongation factor EEF1A 100.0 3.7E-30 1.3E-34 242.2 16.9 179 18-226 266-446 (458)
5 3izq_1 HBS1P, elongation facto 100.0 7.3E-30 2.5E-34 249.0 14.6 173 17-219 425-610 (611)
6 1jny_A EF-1-alpha, elongation 100.0 1.8E-29 6.3E-34 235.2 16.2 176 17-222 254-431 (435)
7 1r5b_A Eukaryotic peptide chai 100.0 2.6E-29 8.9E-34 236.9 8.6 171 17-219 293-466 (467)
8 1zun_B Sulfate adenylate trans 99.9 1.2E-26 4E-31 216.0 14.1 166 17-217 265-434 (434)
9 3mca_A HBS1, elongation factor 99.9 1.4E-26 4.8E-31 225.0 12.4 164 17-219 425-592 (592)
10 2c78_A Elongation factor TU-A; 99.9 1.8E-22 6.2E-27 185.7 12.9 154 18-219 243-404 (405)
11 1d2e_A Elongation factor TU (E 99.9 3.3E-22 1.1E-26 184.0 11.3 157 18-222 226-389 (397)
12 1wb1_A Translation elongation 99.8 2.5E-21 8.6E-26 183.5 8.6 164 18-220 222-395 (482)
13 2elf_A Protein translation elo 99.8 1.4E-19 4.8E-24 166.5 12.7 152 17-216 214-370 (370)
14 3avx_A Elongation factor TS, e 99.8 1.1E-19 3.6E-24 189.1 12.5 160 18-225 517-683 (1289)
15 1s0u_A EIF-2-gamma, translatio 99.7 1.1E-16 3.6E-21 147.6 12.7 145 17-216 236-407 (408)
16 1kk1_A EIF2gamma; initiation o 99.7 3.4E-16 1.2E-20 144.1 11.8 145 17-216 238-409 (410)
17 3sjy_A Translation initiation 99.5 2.5E-14 8.6E-19 131.6 10.7 147 18-216 231-402 (403)
18 1xe1_A Hypothetical protein PF 98.0 1.5E-06 5E-11 69.2 1.8 46 16-64 54-102 (116)
19 2z0t_A Putative uncharacterize 57.0 2 6.8E-05 33.3 -0.3 42 21-62 33-78 (109)
20 3lnn_A Membrane fusion protein 40.1 1E+02 0.0036 26.5 8.1 61 125-185 217-284 (359)
21 1xne_A Hypothetical protein PF 37.3 8.2 0.00028 30.0 0.4 40 22-62 35-78 (113)
22 3ne5_B Cation efflux system pr 31.4 49 0.0017 29.9 4.6 57 127-183 255-319 (413)
No 1
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=100.00 E-value=9.7e-37 Score=261.21 Aligned_cols=176 Identities=19% Similarity=0.249 Sum_probs=158.8
Q ss_pred heeeeeecCCeEEEEecCceeeeccccccc-ccccccCC-CCcccccCcccCCCCccccccCCCCCCCCCCCCCCCCccc
Q psy15204 16 SWICLFIIPKLTIIISDANVKTDVSSNPSA-SAADQSFP-DTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPSTPV 93 (232)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 93 (232)
..+.+.+++||.|.|.|.+.++.|+|++|| +.+++|.| |++||+++++.. .-|
T Consensus 25 ~v~~G~i~~Gd~v~i~P~~~~~~V~~I~~~~~~~~~A~aGd~V~l~L~gi~~-------------------------~di 79 (204)
T 3e1y_E 25 KLESGSICKGQQLVMMPNKHNVEVLGILSDDVETDTVAPGENLKIRLKGIEE-------------------------EEI 79 (204)
T ss_dssp ECCBSCEESSCCEEETTTTEEEEEEEECSSSSCBSEECTTSEEEEEEEESSS-------------------------SCC
T ss_pred EEecCEEECCCEEEECCCCCEEEEEEEEECCEEeEEECCCCEEEEEEcCCCH-------------------------HHC
Confidence 345788999999999999999999999997 69999999 999999998732 136
Q ss_pred ccccccccCCccCCCCCCCCcceEEEEEEeCCCccCcCCCCeEEEEEecceEEEEEEEeeeecccCccceeccCCcccCC
Q psy15204 94 SRSRSPATPTCTSPTPDQEPSRSVKLVKLSNVYQVGFIKELKVGMHQQSLAESAVITRLLSQVHKTSGEVIRKKPRALTK 173 (232)
Q Consensus 94 ~rg~v~a~p~~~~~~p~~~as~~a~Iv~L~~e~~~PI~~Gy~p~Lh~~T~~v~~rI~kI~~kIDk~Tg~~~kk~pk~Lk~ 173 (232)
+||++++.|+. .|.....|+++++|| +++.||.+||+|+||+||.+++|+|.+|.+++|++||+..++++++|++
T Consensus 80 ~rG~vl~~~~~---~~~~~~~f~a~v~~l--~~~~~i~~g~~~~l~~~t~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~ 154 (204)
T 3e1y_E 80 LPGFILCDPNN---LCHSGRTFDAQIVII--EHKSIICPGYNAVLHIHTCIEEVEITALICLVDKKSGEKSKTRPRFVKQ 154 (204)
T ss_dssp CTTCEEBCSSS---CCCCCSEEEEEEECC--SCCSCCCTTEEEEEESSSCEEEEEEEEECCCCCSSTTCCCSSCCSCCCT
T ss_pred ccceEEECCCC---CCchhEEEEEEEEEe--CCCCccCCCceEEEEEeCCEEEEEEEEEEEEEcCCCCCEeccCCcCcCC
Confidence 78999999864 245556789999999 4677999999999999999999999999999999999887778999999
Q ss_pred CCeeEEEEEeCceEEeeeccCCCceeeEEEEECCCeEEEEEEEEeeec
Q psy15204 174 SMSAQVVIETVRPMCVELYRDVKELGRFMLRVSGVTIAAGLITKVIFD 221 (232)
Q Consensus 174 GD~A~V~I~l~kPI~vE~fs~~p~LGRFiLRD~g~TVAaGiI~~V~~k 221 (232)
||.|.|+|++.+|+|+|+|++++.+|||+|||+|+|||+|+|+++.+.
T Consensus 155 gd~a~v~l~~~~pi~~e~~~~~~~~Grfilrd~~~Tva~G~V~~v~~~ 202 (204)
T 3e1y_E 155 DQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVPE 202 (204)
T ss_dssp TCEEEEEEEESSCCCCCCTTSSGGGTEEEEECSSSCCEEEEEEEECC-
T ss_pred CCEEEEEEEECCeEEEEEcccCcCCCCEEEEECCcEEEEEEEEEEecC
Confidence 999999999999999999999999999999999999999999998764
No 2
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=100.00 E-value=2.4e-33 Score=262.55 Aligned_cols=172 Identities=21% Similarity=0.274 Sum_probs=157.3
Q ss_pred eeeeecCCeEEEEecCceeeeccccccc-ccccccCC-CCcccccCcccCCCCccccccCCCCCCCCCCCCCCCCccccc
Q psy15204 18 ICLFIIPKLTIIISDANVKTDVSSNPSA-SAADQSFP-DTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPSTPVSR 95 (232)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r 95 (232)
+.+.+++||.|.|.|.+.++.|+|++|| ..+++|.| |++||+++++.. .-|+|
T Consensus 265 ~~G~l~~Gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~gi~~-------------------------~~i~r 319 (439)
T 3j2k_7 265 ESGSIFKGQQLVMMPNKHNVEVLGILSDDTETDFVAPGENLKIRLKGIEE-------------------------EEILP 319 (439)
T ss_pred EeeEEecCCEEEEccCCceEEEEEEEECCeEcCEecCCCcceEEEeccch-------------------------hhcCC
Confidence 5688999999999999999999999997 69999999 999999998732 13679
Q ss_pred ccccccCCccCCCCCCCCcceEEEEEEeCCCccCcCCCCeEEEEEecceEEEEEEEeeeecccCccceeccCCcccCCCC
Q psy15204 96 SRSPATPTCTSPTPDQEPSRSVKLVKLSNVYQVGFIKELKVGMHQQSLAESAVITRLLSQVHKTSGEVIRKKPRALTKSM 175 (232)
Q Consensus 96 g~v~a~p~~~~~~p~~~as~~a~Iv~L~~e~~~PI~~Gy~p~Lh~~T~~v~~rI~kI~~kIDk~Tg~~~kk~pk~Lk~GD 175 (232)
|+|++.|+. .|.....|+++++|| +|+.+|.+||+|++|+||.+++|+|.+|.+++|++||+..+.+|++|+.||
T Consensus 320 G~vl~~~~~---~~~~~~~f~a~v~~l--~~~~~i~~g~~~~~~~~t~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~~~ 394 (439)
T 3j2k_7 320 GFILCDPSN---LCHSGRTFDVQIVII--EHKSIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQ 394 (439)
T ss_pred cEEecCCCC---CCceeeEEEEEEEEe--CCCCcCCCCCEEEEEEeceEEEEEEEEEEEeecCCchhhhccCcceecCCc
Confidence 999999864 344456789999999 578889999999999999999999999999999999988778899999999
Q ss_pred eeEEEEEeCceEEeeeccCCCceeeEEEEECCCeEEEEEEEEee
Q psy15204 176 SAQVVIETVRPMCVELYRDVKELGRFMLRVSGVTIAAGLITKVI 219 (232)
Q Consensus 176 ~A~V~I~l~kPI~vE~fs~~p~LGRFiLRD~g~TVAaGiI~~V~ 219 (232)
+|+|++++.+|+|+|+|++++.||||+|||+|+|||+|+|++++
T Consensus 395 ~~~v~~~~~~p~~~e~~~~~~~~g~f~l~d~~~tv~~G~i~~v~ 438 (439)
T 3j2k_7 395 VCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLV 438 (439)
T ss_pred EEEEEEEeCCeEEEeeccccccCCCEEEEECCceEEEEEEEEec
Confidence 99999999999999999999999999999999999999999986
No 3
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.97 E-value=1.1e-30 Score=246.35 Aligned_cols=174 Identities=21% Similarity=0.191 Sum_probs=155.8
Q ss_pred eeeeeecCCeEEEEecCceeeeccccccc---------ccccccCC-CCcccccCcccCCCCccccccCCCCCCCCCCCC
Q psy15204 17 WICLFIIPKLTIIISDANVKTDVSSNPSA---------SAADQSFP-DTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRS 86 (232)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (232)
-+.+.+++||.|.|.|.+.++.|+|++|| ..+++|.| |++|++++++..
T Consensus 291 v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~~~~~~~~~a~aG~~v~~~l~~~~~--------------------- 349 (483)
T 3p26_A 291 LESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYP--------------------- 349 (483)
T ss_dssp EEESEECTTCEEEEETTTEEEEEEEEEETTTC-----CCEESCEETTCEEEEEEESCCG---------------------
T ss_pred EecceEccCCEEEEeCCCCeEEEEEEEEcCccccccccccccEECCCCEEEEEEEeccc---------------------
Confidence 45689999999999999999999999998 59999999 999999987632
Q ss_pred CCCCcccccccccccCCccCCCCCCCCcceEEEEEEeCCCccCcCCCCeEEEEEecceEEEEEEEeeeecccCccceecc
Q psy15204 87 QSPSTPVSRSRSPATPTCTSPTPDQEPSRSVKLVKLSNVYQVGFIKELKVGMHQQSLAESAVITRLLSQVHKTSGEVIRK 166 (232)
Q Consensus 87 ~~~~~~v~rg~v~a~p~~~~~~p~~~as~~a~Iv~L~~e~~~PI~~Gy~p~Lh~~T~~v~~rI~kI~~kIDk~Tg~~~kk 166 (232)
.-|+||++++.|+.. .|.....|+|+++|| +++.||.+||+|+||+||.+++|+|.+|.+++|++|++. ++
T Consensus 350 ----~di~rG~vl~~~~~~--~~~~~~~f~a~v~~l--~~~~~l~~g~~~~l~~~t~~~~~~v~~i~~~~d~~~~~~-~~ 420 (483)
T 3p26_A 350 ----EDIQNGDLAASVDYS--SIHSAQCFVLELTTF--DMNRPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTAS-KK 420 (483)
T ss_dssp ----GGCCTTCEEECTTCC--CCEECSEEEEEEEEC--SCSSCBCTTCEEEEEETTEEEEEEEEEEEEEEEETTEEC-CS
T ss_pred ----ccCCceEEEEcCCCC--CCceeeEEEEEEEEE--CCCCCCCCCCEEEEEeCceEEEEEEEEEEEEEcCCCccc-cc
Confidence 136799999988751 234445689999999 578999999999999999999999999999999999976 67
Q ss_pred CCcccCCCCeeEEEEEe---CceEEeeeccCCCceeeEEEEECCCeEEEEEEEEeee
Q psy15204 167 KPRALTKSMSAQVVIET---VRPMCVELYRDVKELGRFMLRVSGVTIAAGLITKVIF 220 (232)
Q Consensus 167 ~pk~Lk~GD~A~V~I~l---~kPI~vE~fs~~p~LGRFiLRD~g~TVAaGiI~~V~~ 220 (232)
+|++|++||.|.|+|++ .+|+|+|+|++++.||||+|||+|+|||+|+|+.+..
T Consensus 421 ~~~~l~~~~~~~v~~~~~~~~~p~~~~~~~~~~~~G~f~l~~~~~tv~~G~i~~~~~ 477 (483)
T 3p26_A 421 KIRHLGSKQRAFVEIELIEVKRWIPLLTAHENDRLGRVVLRKDGRTIAAGKISEITQ 477 (483)
T ss_dssp CCSCBCSSCEEEEEEEECSCSSCCEECCTTTCTTTTEEEEEETTEEEEEEEEEEECC
T ss_pred CccCcCCCCEEEEEEEECCCCCcEEEEecccCccCCCEEEEeCCCEEEEEEEEEecc
Confidence 89999999999999999 8899999999999999999999999999999998753
No 4
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.97 E-value=3.7e-30 Score=242.18 Aligned_cols=179 Identities=22% Similarity=0.301 Sum_probs=158.3
Q ss_pred eeeeecCCeEEEEecCceeeeccccccc-ccccccCC-CCcccccCcccCCCCccccccCCCCCCCCCCCCCCCCccccc
Q psy15204 18 ICLFIIPKLTIIISDANVKTDVSSNPSA-SAADQSFP-DTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPSTPVSR 95 (232)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r 95 (232)
+.+++++||.|.+-|.+.++.|+|++|| ..++++.| |++|++++++.. ..++|
T Consensus 266 ~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~i~l~gi~~-------------------------~~i~r 320 (458)
T 1f60_A 266 ETGVIKPGMVVTFAPAGVTTEVKSVEMHHEQLEQGVPGDNVGFNVKNVSV-------------------------KEIRR 320 (458)
T ss_dssp CBSCBCTTCEEEEETTTEEEEEEEEEETTEECSCBCTTCEEEEEESSCCT-------------------------TTSCT
T ss_pred eCCeEcCCCEEEECCCCceEEEeEEEECCeEEEEEcCCCEEEEEEcCCcc-------------------------cccCc
Confidence 6789999999999999999999999997 68999999 999999987621 12579
Q ss_pred ccccccCCccCCCCCCCCcceEEEEEEeCCCccCcCCCCeEEEEEecceEEEEEEEeeeecccCccceeccCCcccCCCC
Q psy15204 96 SRSPATPTCTSPTPDQEPSRSVKLVKLSNVYQVGFIKELKVGMHQQSLAESAVITRLLSQVHKTSGEVIRKKPRALTKSM 175 (232)
Q Consensus 96 g~v~a~p~~~~~~p~~~as~~a~Iv~L~~e~~~PI~~Gy~p~Lh~~T~~v~~rI~kI~~kIDk~Tg~~~kk~pk~Lk~GD 175 (232)
|++++.|+.. .|.....|+++++|| +++.||..||+|+||+||.+++|+|..|.+++|++|++..++++++|++||
T Consensus 321 G~vl~~~~~~--~~~~~~~f~a~v~~l--~~~~~i~~g~~~~~~~~t~~~~~~i~~l~~~~d~~t~~~~~~~~~~l~~g~ 396 (458)
T 1f60_A 321 GNVCGDAKND--PPKGCASFNATVIVL--NHPGQISAGYSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGD 396 (458)
T ss_dssp TCEEEETTSS--CCCCCSEEEEEEEEC--SCSCCBCTTCCCEEEETTEEEEEEEEEEEEEECTTTCCEEEESCSCBCTTC
T ss_pred eeEEecCCCC--CCceeeEEEEEEEEe--CCCCCCCCCCEEEEEeccceEEEEEEEEEeEecCccccccccCccccCCCC
Confidence 9999999842 244556689999999 478999999999999999999999999999999999998888999999999
Q ss_pred eeEEEEEeCceEEeeeccCCCceeeEEEEECCCeEEEEEEEEeeeccCCcc
Q psy15204 176 SAQVVIETVRPMCVELYRDVKELGRFMLRVSGVTIAAGLITKVIFDQCGST 226 (232)
Q Consensus 176 ~A~V~I~l~kPI~vE~fs~~p~LGRFiLRD~g~TVAaGiI~~V~~k~~G~~ 226 (232)
.|.|+|++.+|+|+|+|++++.||||+|||+|+|||+|+|+++.++. ++.
T Consensus 397 ~~~v~~~~~~p~~~~~~~~~~~~grf~lr~~~~tv~~G~v~~~~~~~-~~~ 446 (458)
T 1f60_A 397 AALVKFVPSKPMCVEAFSEYPPLGRFAVRDMRQTVAVGVIKSVDKTE-KAA 446 (458)
T ss_dssp EEEEEEEESSCCCCCCTTTCGGGSEEEEEETTEEEEEEEEEEEEC------
T ss_pred EEEEEEEECCeEEEecCccCCCCCcEEEEECCeEEEEEEEEeecccc-ccc
Confidence 99999999999999999999999999999999999999999998764 443
No 5
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.96 E-value=7.3e-30 Score=249.00 Aligned_cols=173 Identities=21% Similarity=0.197 Sum_probs=155.9
Q ss_pred eeeeeecCCeEEEEecCceeeeccccccc---------ccccccCC-CCcccccCcccCCCCccccccCCCCCCCCCCCC
Q psy15204 17 WICLFIIPKLTIIISDANVKTDVSSNPSA---------SAADQSFP-DTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRS 86 (232)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (232)
-+.+.+++||.|.|.|.+.++.|+|++|| ..+++|.| |++|++++++..
T Consensus 425 V~~G~lk~Gd~v~~~p~~~~~~VksI~~~~~~~~~~~~~~v~~A~aGd~v~l~l~~~~~--------------------- 483 (611)
T 3izq_1 425 LESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYP--------------------- 483 (611)
T ss_dssp EEESEECTTCEEEETTTTEEEEEEEEECSSCCSCSSSCCCCCCEETTCEEEEEESSCCT---------------------
T ss_pred EEeceeccCCEEEEecCCceEEEEEEEEcccccccccccccceecCCCcceEEeeeccH---------------------
Confidence 45689999999999999999999999998 59999999 999999987632
Q ss_pred CCCCcccccccccccCCccCCCCCCCCcceEEEEEEeCCCccCcCCCCeEEEEEecceEEEEEEEeeeecccCccceecc
Q psy15204 87 QSPSTPVSRSRSPATPTCTSPTPDQEPSRSVKLVKLSNVYQVGFIKELKVGMHQQSLAESAVITRLLSQVHKTSGEVIRK 166 (232)
Q Consensus 87 ~~~~~~v~rg~v~a~p~~~~~~p~~~as~~a~Iv~L~~e~~~PI~~Gy~p~Lh~~T~~v~~rI~kI~~kIDk~Tg~~~kk 166 (232)
.-|+||+|++.|+.. .|.....|.|+++|| +++.||.+||+|+||+||.+++|+|.+|.+++|++|++. ++
T Consensus 484 ----~di~rGdvl~~~~~~--~~~~~~~f~a~v~~l--~~~~~l~~g~~~~l~~~t~~~~~~v~~l~~~~d~~t~~~-~~ 554 (611)
T 3izq_1 484 ----EDIQNGDLAASVDYS--SIHSAQCFVLELTTF--DMNRPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTAS-KK 554 (611)
T ss_dssp ----TSCCTTCEEBCSTTC--SCCCBSCEEEEEEEC--SCSSCBCTTEEEEEESSSCEEEEEEEEEEESSSSCCCBC-TT
T ss_pred ----hhCcceEEccCCCCC--CCceeeEEEEEEEEE--CCCCCCCCCCEEEEEECCeEeeEEeeeeeeeeccccccc-cc
Confidence 136899999998752 244445689999999 579999999999999999999999999999999999986 67
Q ss_pred CCcccCCCCeeEEEEEe---CceEEeeeccCCCceeeEEEEECCCeEEEEEEEEee
Q psy15204 167 KPRALTKSMSAQVVIET---VRPMCVELYRDVKELGRFMLRVSGVTIAAGLITKVI 219 (232)
Q Consensus 167 ~pk~Lk~GD~A~V~I~l---~kPI~vE~fs~~p~LGRFiLRD~g~TVAaGiI~~V~ 219 (232)
+|++|++||.|.|+|.+ .+|||+|+|++++.+|||+|||+|+|||+|+|+++.
T Consensus 555 ~~~~l~~~d~a~v~~~~~~~~~pi~~e~~~~~~~~grf~lr~~~~Tva~G~i~~v~ 610 (611)
T 3izq_1 555 KIRHLGSKQRAFVEIELIEVKRWIPLLTAHENDRLGRVVLRKDGRTIAAGKISEIT 610 (611)
T ss_dssp CSCSSSSCCSEEEEEEESSCSSCBCCCCTTTCHHHHEEEEESSSSEEEEEEEEEEC
T ss_pred CccccCCCCEEEEEEEECCCCCceEEeecccCCCCCcEEEEeCCCEEEEEEEEEec
Confidence 89999999999999999 889999999999999999999999999999999875
No 6
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.96 E-value=1.8e-29 Score=235.21 Aligned_cols=176 Identities=21% Similarity=0.332 Sum_probs=156.3
Q ss_pred eeeeeecCCeEEEEecCceeeeccccccc-ccccccCC-CCcccccCcccCCCCccccccCCCCCCCCCCCCCCCCcccc
Q psy15204 17 WICLFIIPKLTIIISDANVKTDVSSNPSA-SAADQSFP-DTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPSTPVS 94 (232)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 94 (232)
-..+.|++||.|.+.|.+.++.|+|++|| ..++++.| |++|++++++.. .-++
T Consensus 254 v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~g~~~-------------------------~~i~ 308 (435)
T 1jny_A 254 VESGVLKVGDKIVFMPAGKVGEVRSIETHHTKMDKAEPGDNIGFNVRGVEK-------------------------KDIK 308 (435)
T ss_dssp CCBSCEETTCEEEEETTTEEEEEEEEEETTEEESEECTTCEEEEEEESSCG-------------------------GGCC
T ss_pred EecCeEEcCCEEEECCceeEEEEEEEEECCcEEeEEcCCCEEEEEEecCCH-------------------------HHcC
Confidence 45677999999999999999999999997 69999999 999999886521 1256
Q ss_pred cccccccCCccCCCCCCCCcceEEEEEEeCCCccCcCCCCeEEEEEecceEEEEEEEeeeecccCccceeccCCcccCCC
Q psy15204 95 RSRSPATPTCTSPTPDQEPSRSVKLVKLSNVYQVGFIKELKVGMHQQSLAESAVITRLLSQVHKTSGEVIRKKPRALTKS 174 (232)
Q Consensus 95 rg~v~a~p~~~~~~p~~~as~~a~Iv~L~~e~~~PI~~Gy~p~Lh~~T~~v~~rI~kI~~kIDk~Tg~~~kk~pk~Lk~G 174 (232)
||++++.|+. .+.....|.++++||+ ++.||.+||+|+||+||.+++|+|..|.+++|++|++..++++++|++|
T Consensus 309 ~Gd~l~~~~~---~~~~~~~f~a~v~~l~--~~~~l~~g~~~~~~~~t~~~~~~i~~~~~~~d~~~~~~~~~~~~~l~~g 383 (435)
T 1jny_A 309 RGDVVGHPNN---PPTVADEFTARIIVVW--HPTALANGYTPVLHVHTASVACRVSELVSKLDPRTGQEAEKNPQFLKQG 383 (435)
T ss_dssp TTCEEECTTS---CCCEESEEEEEEEECC--CSSCBCTTCCCEEEETTEEEEEEEEEEEEEECTTTCSEEEESCSCBCTT
T ss_pred CccEecCCCC---CceEeEEEEEEEEEEC--CCCcCCCCCEEEEEeCCcEEEEEEEEEeeeeccCcccccccCccccCCC
Confidence 8999998842 2444566899999994 6899999999999999999999999999999999998888899999999
Q ss_pred CeeEEEEEeCceEEeeeccCCCceeeEEEEECCCeEEEEEEEEeeecc
Q psy15204 175 MSAQVVIETVRPMCVELYRDVKELGRFMLRVSGVTIAAGLITKVIFDQ 222 (232)
Q Consensus 175 D~A~V~I~l~kPI~vE~fs~~p~LGRFiLRD~g~TVAaGiI~~V~~k~ 222 (232)
|.|.|+|++.+|+|+|+|++++.||||+|||+|+|||+|+|+++.++.
T Consensus 384 ~~~~v~~~~~~p~~~~~~~~~~~~grf~lr~~~~tv~~G~i~~~~~~~ 431 (435)
T 1jny_A 384 DVAIVKFKPIKPLCVEKYNEFPPLGRFAMRDMGKTVGVGIIVDVKPAK 431 (435)
T ss_dssp CEEEEEEEESSCEECCCTTTSGGGTEEEEEETTEEEEEEEEEEEEC--
T ss_pred CEEEEEEEECceEEEecCCcCCcCccEEEEECCeEEEEEEEeeecCcc
Confidence 999999999999999999999999999999999999999999997644
No 7
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.95 E-value=2.6e-29 Score=236.92 Aligned_cols=171 Identities=20% Similarity=0.259 Sum_probs=152.8
Q ss_pred eeeeeecCCeEEEEecCceeeeccccccc--ccccccCC-CCcccccCcccCCCCccccccCCCCCCCCCCCCCCCCccc
Q psy15204 17 WICLFIIPKLTIIISDANVKTDVSSNPSA--SAADQSFP-DTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPSTPV 93 (232)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 93 (232)
-+.+.|++||.|.+.|.+.++.|+|+++| ..++++.| |++|+++++ .. .-|
T Consensus 293 v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~~a~aG~~v~i~l~g-~~-------------------------~~i 346 (467)
T 1r5b_A 293 IEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSICGDQVRLRVRG-DD-------------------------SDV 346 (467)
T ss_dssp CCBSEEETTEEEEEETTTEEEEEEEEECTTCCEESEEETTCEEEEEEES-CC-------------------------TTC
T ss_pred EeeeEEeeCCEEEEccCCeeEEEEEEeccCCcEeeEEcCCCEEEEEEec-cH-------------------------hhC
Confidence 35678999999999999999999999996 59999999 999999865 21 136
Q ss_pred ccccccccCCccCCCCCCCCcceEEEEEEeCCCccCcCCCCeEEEEEecceEEEEEEEeeeecccCccceeccCCcccCC
Q psy15204 94 SRSRSPATPTCTSPTPDQEPSRSVKLVKLSNVYQVGFIKELKVGMHQQSLAESAVITRLLSQVHKTSGEVIRKKPRALTK 173 (232)
Q Consensus 94 ~rg~v~a~p~~~~~~p~~~as~~a~Iv~L~~e~~~PI~~Gy~p~Lh~~T~~v~~rI~kI~~kIDk~Tg~~~kk~pk~Lk~ 173 (232)
+||++++.|+. .+.....|+++++|| +++.+|.+||+|++|+||.+++|++.+|.+++|+ +++..+++|++|++
T Consensus 347 ~rG~vl~~~~~---~~~~~~~f~a~v~~l--~~~~~~~~g~~~~~~~~t~~~~~~~~~i~~~~d~-~~~~~~~~~~~l~~ 420 (467)
T 1r5b_A 347 QTGYVLTSTKN---PVHATTRFIAQIAIL--ELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLDK-TNRKSKKPPMFATK 420 (467)
T ss_dssp CTTCEEECSSS---CCCEEEEEEEEEEEC--SSCCCBSSCCCBEEESSSCCCCBEESSCCCCCCS-SCCCCSSCCSBCCT
T ss_pred CceEEEeCCCC---CCccceEEEEEEEEe--CCCCccCCCCEEEEEEeCCEEEEEEEEEEEEecC-CccccccCccccCC
Confidence 79999999863 234445689999999 4788999999999999999999999999999999 88776778999999
Q ss_pred CCeeEEEEEeCceEEeeeccCCCceeeEEEEECCCeEEEEEEEEee
Q psy15204 174 SMSAQVVIETVRPMCVELYRDVKELGRFMLRVSGVTIAAGLITKVI 219 (232)
Q Consensus 174 GD~A~V~I~l~kPI~vE~fs~~p~LGRFiLRD~g~TVAaGiI~~V~ 219 (232)
||.+.|+|++.+|+|+|+|++++.||||+|||+|+|||+|+|+++.
T Consensus 421 g~~~~v~l~~~~p~~~~~~~~~~~~grf~lrd~~~Tv~~G~i~~~~ 466 (467)
T 1r5b_A 421 GMKIIAELETQTPVCMERFEDYQYMGRFTLRDQGTTVAVGKVVKIL 466 (467)
T ss_dssp TCBCCEEEEEEEEEECCCTTTCHHHHEEEEECSSSCEEEEEEEEEE
T ss_pred CCEEEEEEEECcEEEEEEcCcCCCCccEEEEECCeEEEEEEEEEec
Confidence 9999999999999999999999999999999999999999999985
No 8
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.94 E-value=1.2e-26 Score=215.99 Aligned_cols=166 Identities=15% Similarity=0.170 Sum_probs=147.9
Q ss_pred eeeeeecCCeEEEEecCceeeeccccccc-ccccccCC-CCcccccCcccCCCCccccccCCCCCCCCCCCCCCCCcccc
Q psy15204 17 WICLFIIPKLTIIISDANVKTDVSSNPSA-SAADQSFP-DTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPSTPVS 94 (232)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 94 (232)
-..+.|++||.|.+.|.+.++.|+|+++| ..++++.| |++|+++++. ..++
T Consensus 265 v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~~~---------------------------~~i~ 317 (434)
T 1zun_B 265 LASGIVHKGDEIVVLPSGKSSRVKSIVTFEGELEQAGPGQAVTLTMEDE---------------------------IDIS 317 (434)
T ss_dssp CCBSCEETTCEEEETTTCCEEEEEEEEETTEEESEECTTCEEEEEESSC---------------------------CCCC
T ss_pred EecceEeCCCEEEEecCCeEEEEEEEEEcCcceeEecCCCEEEEEeCCc---------------------------cccC
Confidence 45678999999999999999999999997 69999999 9999987531 1367
Q ss_pred cccccccCCccCCCCCCCCcceEEEEEEeCCCccCcCCCCeEEEEEecceEEEEEEEeeeecccCccceeccCCcccCCC
Q psy15204 95 RSRSPATPTCTSPTPDQEPSRSVKLVKLSNVYQVGFIKELKVGMHQQSLAESAVITRLLSQVHKTSGEVIRKKPRALTKS 174 (232)
Q Consensus 95 rg~v~a~p~~~~~~p~~~as~~a~Iv~L~~e~~~PI~~Gy~p~Lh~~T~~v~~rI~kI~~kIDk~Tg~~~kk~pk~Lk~G 174 (232)
||++++.|+. .|.....|+++++||. +.||..||+|++|+||.++.|+|..|.+++|.++++. +++++|++|
T Consensus 318 ~G~~l~~~~~---~~~~~~~f~a~~~~l~---~~~l~~g~~~~~~~~t~~~~~~v~~~~~~~d~~~~~~--~~~~~l~~~ 389 (434)
T 1zun_B 318 RGDLLVHADN---VPQVSDAFDAMLVWMA---EEPMLPGKKYDIKRATSYVPGSIASITHRVDVNTLEE--GPASSLQLN 389 (434)
T ss_dssp TTCEEEETTS---CCCEEEEEEEEEEECC---SSCBCTTCCEEEECSSCEEEEEEEEEEEEECTTTCCC--CCCSCBCTT
T ss_pred CccEEECCCC---CCCcccEEEEEEEEec---cccCCCCCEEEEEEcCCEEEEEEEEEeeeeccccccc--cCccEeCCC
Confidence 9999999874 2344556899999994 6799999999999999999999999999999999973 678999999
Q ss_pred CeeEEEEEeCceEEeeeccCCCceeeEEEEEC--CCeEEEEEEEE
Q psy15204 175 MSAQVVIETVRPMCVELYRDVKELGRFMLRVS--GVTIAAGLITK 217 (232)
Q Consensus 175 D~A~V~I~l~kPI~vE~fs~~p~LGRFiLRD~--g~TVAaGiI~~ 217 (232)
|.+.|+|++.+|+|+|+|.+++.||||+|||. |+|||+|+|++
T Consensus 390 d~~~v~~~~~~p~~~~~~~~~~~~grf~l~d~~~~~tv~~G~i~~ 434 (434)
T 1zun_B 390 EIGRVKVSLDAPIALDGYSSNRTTGAFIVIDRLTNGTVAAGMIIA 434 (434)
T ss_dssp CEEEEEEEEEEEEECCCTTTCTTTTEEEEECTTTCCEEEEEEEEC
T ss_pred CEEEEEEEECCeEEEcccccCCccceEEEEECCCCcEEEEEEEeC
Confidence 99999999999999999999999999999986 89999999963
No 9
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.94 E-value=1.4e-26 Score=224.97 Aligned_cols=164 Identities=15% Similarity=0.129 Sum_probs=143.3
Q ss_pred eeeeeecCCeEEEEecCceeeeccccccc-cccc-ccCC-CCcccccCcccCCCCccccccCCCCCCCCCCCCCCCCccc
Q psy15204 17 WICLFIIPKLTIIISDANVKTDVSSNPSA-SAAD-QSFP-DTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPSTPV 93 (232)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 93 (232)
-..+.|++||.|.|.|.+.++.|+|++|| ..++ ++.| |++||+++++.. .-|
T Consensus 425 v~~G~l~~Gd~v~i~p~~~~~~V~~i~~~~~~~~~~a~aG~~v~~~l~~i~~-------------------------~~i 479 (592)
T 3mca_A 425 VEAGNVQVNQVLYDVSSQEDAYVKNVIRNSDPSSTWAVAGDTVTLQLADIEV-------------------------NQL 479 (592)
T ss_dssp EEESEEETTCEEEETTTTEEEEEEEEECSSSCSCCEEETTCEEEEEESSSCG-------------------------GGC
T ss_pred EeeeeEccCCEEEEccCCceEEEEEEEEcCccCcceecCCCEEEEEEccccc-------------------------ccc
Confidence 35688999999999999999999999997 5899 9999 999999987732 135
Q ss_pred ccccccccCCccCCCCCCCCcceEEEEEEeCCCccCcCCCCeEEEEEecceEEEEEEEeeeecccCccceeccCCcccCC
Q psy15204 94 SRSRSPATPTCTSPTPDQEPSRSVKLVKLSNVYQVGFIKELKVGMHQQSLAESAVITRLLSQVHKTSGEVIRKKPRALTK 173 (232)
Q Consensus 94 ~rg~v~a~p~~~~~~p~~~as~~a~Iv~L~~e~~~PI~~Gy~p~Lh~~T~~v~~rI~kI~~kIDk~Tg~~~kk~pk~Lk~ 173 (232)
+||+|++.|+. .+.....|.++++|| +++.||..||+|+||+||.+++|+| +|.+. .++++++|++
T Consensus 480 ~rG~vl~~~~~---~~~~~~~f~a~v~~~--~~~~pi~~g~~~~l~~~t~~~~~~i-~l~~~--------~~~~~~~l~~ 545 (592)
T 3mca_A 480 RPGDILSNYEN---PVRRVRSFVAEIQTF--DIHGPILSGSTLVLHLGRTVTSVSL-KIVTV--------NNKRSRHIAS 545 (592)
T ss_dssp CTTCEEECSSS---CCEEESEEEEEEEEC--SCSSCEETTEEEEEECSSCEEEEEE-EEEES--------SSSCCSEECS
T ss_pred ceEEEeccCCC---CccccCeEEEEEEEE--CCCccCCCCCEEEEEEcCcEEEEEE-EEEec--------cccchhccCC
Confidence 78999999863 233345678999999 5789999999999999999999999 77651 1356899999
Q ss_pred CCeeEEEEE-eCceEEeeeccCCCceeeEEEEECCCeEEEEEEEEee
Q psy15204 174 SMSAQVVIE-TVRPMCVELYRDVKELGRFMLRVSGVTIAAGLITKVI 219 (232)
Q Consensus 174 GD~A~V~I~-l~kPI~vE~fs~~p~LGRFiLRD~g~TVAaGiI~~V~ 219 (232)
||.+.|+|+ +.+|+|+|+|++++.+|||+||++|+|||+|+|++++
T Consensus 546 gd~~~v~l~fl~~p~~~e~~~~~~~~~rfilr~~~~Tv~~G~i~~v~ 592 (592)
T 3mca_A 546 RKRALVRISFLDGLFPLCLAEECPALGRFILRRSGDTVAAGIVKELC 592 (592)
T ss_dssp SCEEEEEEEESSSCEEECCTTTCHHHHEEEEESSSSEEEEEEEEEEC
T ss_pred CCEEEEEEEECCCcEEEEeccCCCCCCeEEEEECCcEEEEEEEEEcC
Confidence 999999999 9999999999999999999999999999999999874
No 10
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.88 E-value=1.8e-22 Score=185.70 Aligned_cols=154 Identities=18% Similarity=0.204 Sum_probs=131.6
Q ss_pred eeeeecCCeEEEEecCc---eeeeccccccc-ccccccCC-CCcccccCcccCCCCccccccCCCCCCCCCCCCCCCCcc
Q psy15204 18 ICLFIIPKLTIIISDAN---VKTDVSSNPSA-SAADQSFP-DTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPSTP 92 (232)
Q Consensus 18 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (232)
..+.|++||.|.+.|.+ .++.|+|++|| ..++++.| |++|++++++.. .-
T Consensus 243 ~~G~l~~gd~v~~~~~~~~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~g~~~-------------------------~~ 297 (405)
T 2c78_A 243 ERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSR-------------------------EE 297 (405)
T ss_dssp CBSEEETTCEEEEESSSSSCEEEEEEEEEETTEEESEEETTCEEEEEESSCCT-------------------------TT
T ss_pred ecccccCCCEEEEeCCCCCeeeEEEEEEEECCcccCEEcCCCEEEEEECCCcH-------------------------hh
Confidence 45789999999999998 79999999997 69999999 999999876511 13
Q ss_pred cccccccccCCccCCCCCCCCcceEEEEEEeCC---CccCcCCCCeEEEEEecceEEEEEEEeeeecccCccceeccCCc
Q psy15204 93 VSRSRSPATPTCTSPTPDQEPSRSVKLVKLSNV---YQVGFIKELKVGMHQQSLAESAVITRLLSQVHKTSGEVIRKKPR 169 (232)
Q Consensus 93 v~rg~v~a~p~~~~~~p~~~as~~a~Iv~L~~e---~~~PI~~Gy~p~Lh~~T~~v~~rI~kI~~kIDk~Tg~~~kk~pk 169 (232)
++||++++.|+. +.....|+++++||+.+ +++||..||++++|++|.+++|+|. +. ++++
T Consensus 298 i~~G~~l~~~~~----~~~~~~f~a~v~~l~~~~~~~~~~~~~g~~~~~~~~t~~~~~~i~-~~------------~~~~ 360 (405)
T 2c78_A 298 VERGQVLAKPGS----ITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQ-LP------------PGVE 360 (405)
T ss_dssp CCTTCEEESTTS----SEEEEEEEEEEEECCGGGTSCSSCBCTTCCCEEEETTEEEEEEEE-CC------------TTCC
T ss_pred cCceEEEEcCCC----CceeEEEEEEEEEecccCCCccccccCCceEEEEEcccEEEEEEE-Ec------------cCcc
Confidence 679999999873 33345588999999632 4579999999999999999999998 42 2357
Q ss_pred ccCCCCeeEEEEEeCceEEeeeccCCCceeeEEEEECCCeEEEEEEEEee
Q psy15204 170 ALTKSMSAQVVIETVRPMCVELYRDVKELGRFMLRVSGVTIAAGLITKVI 219 (232)
Q Consensus 170 ~Lk~GD~A~V~I~l~kPI~vE~fs~~p~LGRFiLRD~g~TVAaGiI~~V~ 219 (232)
++++||.+.|+|++.+|+|+|.|. ||+|||+|+|||+|+|+++.
T Consensus 361 ~l~~~~~~~v~~~~~~p~~~~~~~------rf~lr~~~~ti~~G~i~~~~ 404 (405)
T 2c78_A 361 MVMPGDNVTFTVELIKPVALEEGL------RFAIREGGRTVGAGVVTKIL 404 (405)
T ss_dssp CBCTTCEEEEEEEEEEEEEECTTC------EEEEEETTEEEEEEEEEEEC
T ss_pred ccCCCCEEEEEEEECceEEEccCC------EEEEEcCCeEEEEEEEEecc
Confidence 899999999999999999999985 99999999999999999875
No 11
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.87 E-value=3.3e-22 Score=184.03 Aligned_cols=157 Identities=17% Similarity=0.106 Sum_probs=133.3
Q ss_pred eeeeecCCeEEEEecCc--eeeeccccccc-ccccccCC-CCcccccCcccCCCCccccccCCCCCCCCCCCCCCCCccc
Q psy15204 18 ICLFIIPKLTIIISDAN--VKTDVSSNPSA-SAADQSFP-DTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPSTPV 93 (232)
Q Consensus 18 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 93 (232)
..+.|++||.|.+.|.+ .++.|+|++|| ..++++.| |++|++++++.. .-+
T Consensus 226 ~~G~l~~gd~v~~~~~~~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~~i~~-------------------------~~i 280 (397)
T 1d2e_A 226 ERGILKKGDECEFLGHSKNIRTVVTGIEMFHKSLDRAEAGDNLGALVRGLKR-------------------------EDL 280 (397)
T ss_dssp CBSEEETTCEEEEEETTEEEEEEEEEEEETTEEESEEETTCEEEEEESSCCG-------------------------GGC
T ss_pred eeceEeCCCEEEEeCCCCCeEEEEEEEEECCcccCEecCCCceEEEecccch-------------------------hcc
Confidence 45789999999999975 89999999997 69999999 999999876521 236
Q ss_pred ccccccccCCccCCCCCCCCcceEEEEEEeCC---CccCcCCCCeEEEEEecceEEEEEEEeeeecccCccceeccCCcc
Q psy15204 94 SRSRSPATPTCTSPTPDQEPSRSVKLVKLSNV---YQVGFIKELKVGMHQQSLAESAVITRLLSQVHKTSGEVIRKKPRA 170 (232)
Q Consensus 94 ~rg~v~a~p~~~~~~p~~~as~~a~Iv~L~~e---~~~PI~~Gy~p~Lh~~T~~v~~rI~kI~~kIDk~Tg~~~kk~pk~ 170 (232)
+||++++.|+. +.....|+++++||+.+ ++.||..||++++|++|.+++|+|. +. +++++
T Consensus 281 ~~G~~l~~~~~----~~~~~~f~a~v~~l~~~~~~~~~~~~~g~~~~~~~~t~~~~~~i~-l~------------~~~~~ 343 (397)
T 1d2e_A 281 RRGLVMAKPGS----IQPHQKVEAQVYILTKEEGGRHKPFVSHFMPVMFSLTWDMACRII-LP------------PGKEL 343 (397)
T ss_dssp CTTCEEESTTS----CCCEEEEEEEEEECCGGGTSCSSCBCTTCCCEEEETTEEEEEEEE-CC------------SSCCC
T ss_pred CceeEEeCCCC----CCcccEEEEEEEEeccccccCccccCCCCEEEEEEecCEEEEEEE-Ec------------CCccc
Confidence 79999999873 33445688999999621 2579999999999999999999988 42 23678
Q ss_pred cCCCCeeEEEEEeCceEEeeeccCCCceeeEEEEECCCeEEEEEEEEeeecc
Q psy15204 171 LTKSMSAQVVIETVRPMCVELYRDVKELGRFMLRVSGVTIAAGLITKVIFDQ 222 (232)
Q Consensus 171 Lk~GD~A~V~I~l~kPI~vE~fs~~p~LGRFiLRD~g~TVAaGiI~~V~~k~ 222 (232)
|++||.+.|+|++.+|+|+|.+. ||+||++++|||+|+|+++.++.
T Consensus 344 l~~~~~~~v~~~~~~p~~~~~~~------r~~lr~~~~ti~~G~i~~~~~~~ 389 (397)
T 1d2e_A 344 AMPGEDLKLTLILRQPMILEKGQ------RFTLRDGNRTIGTGLVTDTPAMT 389 (397)
T ss_dssp BCTTCEEEEEEEEEEEECCCTTC------EEEEEETTEEEEEEEEEECCCCC
T ss_pred ccCCCEEEEEEEECCeEEEccCC------eEEEEeCCeEEEEEEEeecccCc
Confidence 99999999999999999999985 99999999999999999998764
No 12
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.84 E-value=2.5e-21 Score=183.48 Aligned_cols=164 Identities=14% Similarity=0.076 Sum_probs=140.0
Q ss_pred eeeeecCCeEEEEecCceeeeccccccc-ccccccCC-CCcccccCcccCCCCccccccCCCCCCCCCCCCCCCCccccc
Q psy15204 18 ICLFIIPKLTIIISDANVKTDVSSNPSA-SAADQSFP-DTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPSTPVSR 95 (232)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r 95 (232)
..+.+++||.|.+.|.+.++.|+|+++| +.++++.| |++|++++++.. ..++|
T Consensus 222 ~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~~G~~v~~~l~~~~~-------------------------~~i~~ 276 (482)
T 1wb1_A 222 NKGIVKVGDELKVLPINMSTKVRSIQYFKESVMEAKAGDRVGMAIQGVDA-------------------------KQIYR 276 (482)
T ss_dssp CBSCCCSSEEECCTTTCCCEEECCBCGGGSCBCCCCSSCCCCEECSSCCS-------------------------SCCCS
T ss_pred EEeEEeeCCEEEECCCCcEEEEeEEEECCeEeeEecCCCEEEEEecCCCH-------------------------hhccc
Confidence 4578999999999999999999999997 69999999 999999987621 13678
Q ss_pred cccc-ccCCccCCCCCCCCcceEEEEEEeCCCccCcCCCCeEEEEEecceEEEEEEEee-eecccCccceeccCCcccCC
Q psy15204 96 SRSP-ATPTCTSPTPDQEPSRSVKLVKLSNVYQVGFIKELKVGMHQQSLAESAVITRLL-SQVHKTSGEVIRKKPRALTK 173 (232)
Q Consensus 96 g~v~-a~p~~~~~~p~~~as~~a~Iv~L~~e~~~PI~~Gy~p~Lh~~T~~v~~rI~kI~-~kIDk~Tg~~~kk~pk~Lk~ 173 (232)
|+++ +.|+. +.....|+++++||+ .++.||..||+|.+|++|.++.|+|..+. +++|.++++. .+++|++
T Consensus 277 Gdvl~~~~~~----~~~~~~~~a~v~~l~-~~~~~l~~g~~~~l~~~t~~~~~~v~~~~~~~~d~~~~~~---~~~~l~~ 348 (482)
T 1wb1_A 277 GXILTSKDTK----LQTVDKIVAKIKISD-IFKYNLTPKMKVHLNVGMLIVPAVAVPFKKVTFGKTEENI---ILNEVIS 348 (482)
T ss_dssp SCBCCCTTCC----CCCEEEEEECCCCCS-SCCSCCCSSCEEEEEETTEEEEEEEEEEEECCSSSCCCEE---ECCSSCC
T ss_pred cceEecCCCC----CceeeEEEEEEEEec-cCCcccCCCCEEEEEEcccEEEEEEEEEeccccccccccc---cchhhcC
Confidence 9999 77753 233345788899995 34689999999999999999999999998 8999988653 2578999
Q ss_pred CCeeEEEEEeCceEEeeeccCCCceeeEEEEE---C---CCeEEEEEEEEeee
Q psy15204 174 SMSAQVVIETVRPMCVELYRDVKELGRFMLRV---S---GVTIAAGLITKVIF 220 (232)
Q Consensus 174 GD~A~V~I~l~kPI~vE~fs~~p~LGRFiLRD---~---g~TVAaGiI~~V~~ 220 (232)
||.+.|+|++.+|+|+|++ +||+||| + ++|+|+|+|+++..
T Consensus 349 g~~~~v~l~~~~pv~~~~~------~rfilr~~~~~~~~~~tvg~G~v~~~~~ 395 (482)
T 1wb1_A 349 GNEXYXAFELEEKVLAEVG------DRVLITRLDLPPTTLRIXGHGLIEEFKP 395 (482)
T ss_dssp SSCCCEEEEEEEEECCCSS------CCCBEECTTSCTTSCCCCCBCCEEECCC
T ss_pred CCEEEEEEEcCccEEecCC------CeEEEEECCCCccCceEeeEEEEEeccc
Confidence 9999999999999999977 4999999 4 89999999998743
No 13
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.81 E-value=1.4e-19 Score=166.54 Aligned_cols=152 Identities=9% Similarity=0.018 Sum_probs=127.4
Q ss_pred eeeeeecCCeEEEEecCceeeeccccccc-ccccccCC-CCcccccCcccCCCCccccccCCCCCCCCCCCCCCCCcccc
Q psy15204 17 WICLFIIPKLTIIISDANVKTDVSSNPSA-SAADQSFP-DTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPSTPVS 94 (232)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 94 (232)
-+.+.+++||.|.+.|.+.++.|+|++|+ ..++++.| |++|++++++.. ..++
T Consensus 214 v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~aGd~v~i~l~gv~~-------------------------~~i~ 268 (370)
T 2elf_A 214 VKQGISKDKDKTKIFPLDRDIEIRSIQSHDVDIDSAPAGTRVGMRLKNVQA-------------------------KDIE 268 (370)
T ss_dssp EEESEEETTCEEEEETTTEEEEEEEEEETTEEESEEETTCEEEEEEESCCG-------------------------GGCC
T ss_pred EECCEEeeCCEEEECCCCcEEEEeEEEECCCCccEEcCCCcceEEEeccCH-------------------------HHcC
Confidence 36788999999999999999999999997 69999999 999999887621 1256
Q ss_pred cccccccCCccCCCCCCCCcceEEEEEEeCCCccCcCCCCeEEEEEecceEEEEEEEeeeecccCccceeccCCcccCCC
Q psy15204 95 RSRSPATPTCTSPTPDQEPSRSVKLVKLSNVYQVGFIKELKVGMHQQSLAESAVITRLLSQVHKTSGEVIRKKPRALTKS 174 (232)
Q Consensus 95 rg~v~a~p~~~~~~p~~~as~~a~Iv~L~~e~~~PI~~Gy~p~Lh~~T~~v~~rI~kI~~kIDk~Tg~~~kk~pk~Lk~G 174 (232)
||++++. + |.....|+++++||+ ++.||.+||+|++|++|.+++|+|..|.. |++ ++ +.+++|
T Consensus 269 ~Gdvl~~-~-----~~~~~~f~a~v~~l~--~~~~i~~g~~~~~~~~t~~~~~~v~~l~~--d~~-~~------~~~~~g 331 (370)
T 2elf_A 269 RGFIISD-K-----EIVTTDYTLECTVSK--FTKKIEPASVLHLFVGLQSEPVRVEKILV--DGN-EV------EEAKPG 331 (370)
T ss_dssp TTCEEES-C-----CEEEEEEEEEEEECT--TSCCBCTTCEEEEEETTEEEEEEEEEEEE--TTE-EE------SCBCTT
T ss_pred CceEEEC-C-----CceeEEEEEEEEEEC--CCCCCCCCCEEEEEEcCCEEEEEEEEEEe--CCC-cc------eeecCC
Confidence 8899987 2 223345789999994 58999999999999999999999999864 432 21 345699
Q ss_pred CeeEEEEEeCceEEeeeccCCCceeeEEEEECC---CeEEEEEEE
Q psy15204 175 MSAQVVIETVRPMCVELYRDVKELGRFMLRVSG---VTIAAGLIT 216 (232)
Q Consensus 175 D~A~V~I~l~kPI~vE~fs~~p~LGRFiLRD~g---~TVAaGiI~ 216 (232)
|.+.|+|++.+|+|+|+|+ ||+|||++ +|+|+|.|.
T Consensus 332 ~~~~v~l~~~~pi~~~~~~------rfilr~~~~~~~tig~G~~~ 370 (370)
T 2elf_A 332 STCVLELSGNKKLAYSKQD------RFLLANLDLTQRFAAYGFSK 370 (370)
T ss_dssp CEEEEEEEEEEEEEECTTS------CEEEECTTSSSCEEEEEEEC
T ss_pred CEEEEEEEECcEEEEeCCC------EEEEEECCCCCEEEEEEEeC
Confidence 9999999999999999998 99999975 699999873
No 14
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.80 E-value=1.1e-19 Score=189.12 Aligned_cols=160 Identities=16% Similarity=0.188 Sum_probs=135.0
Q ss_pred eeeeecCCeEEEEecCc--eeeeccccccc-ccccccCC-CCcccccCcccCCCCccccccCCCCCCCCCCCCCCCCccc
Q psy15204 18 ICLFIIPKLTIIISDAN--VKTDVSSNPSA-SAADQSFP-DTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPSTPV 93 (232)
Q Consensus 18 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 93 (232)
..+.|++||.|.+.|.+ .++.|+|++|| ..++++.| |++|++++++.. .-+
T Consensus 517 ~sGtLkvGD~V~I~ps~~~~~~kVksI~~~~~~v~eA~AGd~Vgl~L~GI~~-------------------------~dI 571 (1289)
T 3avx_A 517 ERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKR-------------------------EEI 571 (1289)
T ss_dssp CBSEEETTCEEEEESSSSCEEEEEEEEECSSCEESEEETTCEEEEEESSCCG-------------------------GGC
T ss_pred eccEEecCCEEEEecCCCceeEEEEEEeecCceeeEEecCCcceeEeeecch-------------------------hcC
Confidence 46789999999999998 89999999997 69999999 999999876521 236
Q ss_pred ccccccccCCccCCCCCCCCcceEEEEEEeCC---CccCcCCCCeEEEEEecceEEEEEEEeeeecccCccceeccCCcc
Q psy15204 94 SRSRSPATPTCTSPTPDQEPSRSVKLVKLSNV---YQVGFIKELKVGMHQQSLAESAVITRLLSQVHKTSGEVIRKKPRA 170 (232)
Q Consensus 94 ~rg~v~a~p~~~~~~p~~~as~~a~Iv~L~~e---~~~PI~~Gy~p~Lh~~T~~v~~rI~kI~~kIDk~Tg~~~kk~pk~ 170 (232)
+||++++.|+. +.....|.++++||..+ +++||..||.|++|++|.+++|+|. |. +++++
T Consensus 572 ~RGdVL~~~~~----~~~~~~F~A~V~~L~~~egg~~~pi~~G~~p~l~igT~~vtg~I~-L~------------~~~~~ 634 (1289)
T 3avx_A 572 ERGQVLAKPGT----IKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIE-LP------------EGVEM 634 (1289)
T ss_dssp CTTCEEESTTS----CCEEEEEEEEEEECCGGGTSCSSCBCTTCCCEEECSSCEEEEEEE-CC------------TTCCC
T ss_pred CcccEEecCCC----CccceeEEEEEEEEccccccccccccCCCceEEEEeeeeEEEEEE-EC------------CCccc
Confidence 79999999874 33345578899999631 4579999999999999999999997 41 23678
Q ss_pred cCCCCeeEEEEEeCceEEeeeccCCCceeeEEEEECCCeEEEEEEEEeeeccCCc
Q psy15204 171 LTKSMSAQVVIETVRPMCVELYRDVKELGRFMLRVSGVTIAAGLITKVIFDQCGS 225 (232)
Q Consensus 171 Lk~GD~A~V~I~l~kPI~vE~fs~~p~LGRFiLRD~g~TVAaGiI~~V~~k~~G~ 225 (232)
|++||.+.|+|++.+|+|+|.+. ||+|||+|+|||+|+|+++.++..|+
T Consensus 635 L~~Gd~a~V~L~l~~Pi~ve~g~------RFiLRd~grTIG~G~V~~v~~~~~~~ 683 (1289)
T 3avx_A 635 VMPGDNIKMVVTLIHPIAMDDGL------RFAIREGGRTVGAGVVAKVLSGASGA 683 (1289)
T ss_dssp BCTTCCCEEEEEEEEEEECCTTC------EEEEEETTEEEEEEEEEEECCCCC--
T ss_pred ccCCCEEEEEEEECceEEEccCC------EEEEEeCCeEEEEEEEeeechhhhhc
Confidence 99999999999999999999985 99999999999999999998776554
No 15
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.69 E-value=1.1e-16 Score=147.62 Aligned_cols=145 Identities=15% Similarity=0.102 Sum_probs=117.8
Q ss_pred eeeeeecCCeEEEEecCc------------eeeeccccccc-ccccccCC-CCcccccCcccCCCCccccccCCCCCCCC
Q psy15204 17 WICLFIIPKLTIIISDAN------------VKTDVSSNPSA-SAADQSFP-DTSGFAVPECIPTKTPTQKKLGPSSSTPV 82 (232)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (232)
-..+.|++||.|.+.|.. .++.|+|++|| ..+++|.| |++|++++.- ++ +
T Consensus 236 v~~G~l~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~a~~G~~v~~~~~~~------------~~----~ 299 (408)
T 1s0u_A 236 IIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAAGNTILRKAHPGGLIGVGTTLD------------PY----L 299 (408)
T ss_dssp EEESCEETTCEEEEEEEEEECCTTCCEEEEEEEECCEEEETTEEESEECSSSCEEEECSSC------------GG----G
T ss_pred EEECeEecCCEEEEcCCcccccccccccccceeEEEEEEECCEEcCEEeCCCeEEEEeccC------------cc----c
Confidence 456789999999999864 48999999997 69999999 9999986510 11 0
Q ss_pred CCCCCCCCcccccccccccCCccCCCCCCCCcceEEEEEEeCCC---------ccCcCCCCeEEEEEecceEEEEEEEee
Q psy15204 83 TPRSQSPSTPVSRSRSPATPTCTSPTPDQEPSRSVKLVKLSNVY---------QVGFIKELKVGMHQQSLAESAVITRLL 153 (232)
Q Consensus 83 ~~~~~~~~~~v~rg~v~a~p~~~~~~p~~~as~~a~Iv~L~~e~---------~~PI~~Gy~p~Lh~~T~~v~~rI~kI~ 153 (232)
+ ..-++||||++.|+.. |.....|+++++||+ + +.+|..||++++|++|.++.|+|..+.
T Consensus 300 ---~---~~~~~~G~vl~~~~~~---~~~~~~~~a~~~~l~--~~~g~~~~~~~~~l~~g~~~~~~~~t~~~~~~v~~~~ 368 (408)
T 1s0u_A 300 ---T---KSDALTGSVVGLPGTL---PPIREKITIRANLLD--RVVGTKEELKIEPLRTGEVLMLNIGTATTAGVITSAR 368 (408)
T ss_dssp ---T---GGGTTTTCEEESTTCS---CCEEEEEEEEEEECC--CCSSCSSTTCCCCCCTTCEEEEEETTEEEEEEEEEEE
T ss_pred ---c---hhhccceeEEECCCCC---CceeEEEEEEEEEEe--ccccccccccccCCCCCCEEEEEEcCCEEEEEEEEec
Confidence 0 1246899999999842 333446789999995 4 389999999999999999999999873
Q ss_pred eecccCccceeccCCcccCCCCeeEEEEEeCceEEeeeccCCCceeeEEEEE----CCCeEEEEEEE
Q psy15204 154 SQVHKTSGEVIRKKPRALTKSMSAQVVIETVRPMCVELYRDVKELGRFMLRV----SGVTIAAGLIT 216 (232)
Q Consensus 154 ~kIDk~Tg~~~kk~pk~Lk~GD~A~V~I~l~kPI~vE~fs~~p~LGRFiLRD----~g~TVAaGiI~ 216 (232)
. | .++|++.+|+|+|.++ ||+||+ .++|||+|.|+
T Consensus 369 ~--------------------~--~~~~~~~~p~~~~~~~------~~~~~~~~~~~~r~ig~G~i~ 407 (408)
T 1s0u_A 369 G--------------------D--IADIKLKLPICAEIGD------RVAISRRVGSRWRLIGYGTIE 407 (408)
T ss_dssp T--------------------T--EEEEEEEEEEECCTTC------EEEEEEECSSSEEEEEEEEEC
T ss_pred C--------------------C--EEEEEECCcEEecCCC------EEEEEEecCCCeEEEEEEEEc
Confidence 1 2 6778888999999998 999999 68999999986
No 16
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.66 E-value=3.4e-16 Score=144.09 Aligned_cols=145 Identities=14% Similarity=0.123 Sum_probs=117.3
Q ss_pred eeeeeecCCeEEEEecCc------------eeeeccccccc-ccccccCC-CCcccccCcccCCCCccccccCCCCCCCC
Q psy15204 17 WICLFIIPKLTIIISDAN------------VKTDVSSNPSA-SAADQSFP-DTSGFAVPECIPTKTPTQKKLGPSSSTPV 82 (232)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (232)
-..+.|++||.|.+.|.+ .++.|+|+++| ..+++|.| |++|++++.- ++ +
T Consensus 238 v~~G~l~~gd~v~~~p~~~~~~~g~~~~~~~~~~v~~i~~~~~~v~~a~aG~~v~~~~~~~------------~~----~ 301 (410)
T 1kk1_A 238 IVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAGGQFVEEAYPGGLVGVGTKLD------------PY----L 301 (410)
T ss_dssp EEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTEEESEECSSSCEEEEESSC------------GG----G
T ss_pred EEeCeEeeCCEEEECCCCccccccccccccceeEEEEEEECCeEecEEcCCCEEEEEEecC------------cc----c
Confidence 356789999999999864 47899999997 69999999 9999986521 01 0
Q ss_pred CCCCCCCCcccccccccccCCccCCCCCCCCcceEEEEEEeCCC---------ccCcCCCCeEEEEEecceEEEEEEEee
Q psy15204 83 TPRSQSPSTPVSRSRSPATPTCTSPTPDQEPSRSVKLVKLSNVY---------QVGFIKELKVGMHQQSLAESAVITRLL 153 (232)
Q Consensus 83 ~~~~~~~~~~v~rg~v~a~p~~~~~~p~~~as~~a~Iv~L~~e~---------~~PI~~Gy~p~Lh~~T~~v~~rI~kI~ 153 (232)
+ ...+.|||||+.|+.. |.....|+++++||+ + +.+|..||++++|++|.++.|+|..+.
T Consensus 302 ~------~~d~~~G~vl~~~~~~---~~~~~~~~a~~~~l~--~~~g~~~~~~~~~l~~g~~~~~~~~t~~~~~~v~~~~ 370 (410)
T 1kk1_A 302 T------KGDLMAGNVVGKPGKL---PPVWDSLRLEVHLLE--RVVGTEQELKVEPIKRKEVLLLNVGTARTMGLVTGLG 370 (410)
T ss_dssp T------GGGTTTTCEEECTTCS---CCEEEEEEEEEEECC--CCC--CCCCSCCCCCTTCEEEEEETTEEEEEEEEEEE
T ss_pred c------hhhccceeEEecCCCC---CceeEEEEEEEEEEe--cccccccccccccCCCCCEEEEEEcCCEEeEEEEEec
Confidence 0 0236799999999752 333446789999995 4 389999999999999999999999873
Q ss_pred eecccCccceeccCCcccCCCCeeEEEEEeCceEEeeeccCCCceeeEEEEE----CCCeEEEEEEE
Q psy15204 154 SQVHKTSGEVIRKKPRALTKSMSAQVVIETVRPMCVELYRDVKELGRFMLRV----SGVTIAAGLIT 216 (232)
Q Consensus 154 ~kIDk~Tg~~~kk~pk~Lk~GD~A~V~I~l~kPI~vE~fs~~p~LGRFiLRD----~g~TVAaGiI~ 216 (232)
. | .++|++.+|+|++.++ ||+||+ .++|||.|.|+
T Consensus 371 ~--------------------~--~~~l~~~~p~~~~~~~------~~~~~~~~~~~~r~ig~G~i~ 409 (410)
T 1kk1_A 371 K--------------------D--EIEVKLQIPVCAEPGD------RVAISRQIGSRWRLIGYGIIK 409 (410)
T ss_dssp T--------------------T--EEEEEEEEEEECCTTC------EEEEEEEETTEEEEEEEEEEE
T ss_pred C--------------------C--EEEEEeCCcEEecCCC------EEEEEEecCCCcEEEEEEEEc
Confidence 1 2 6778888999999998 999999 68999999986
No 17
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.53 E-value=2.5e-14 Score=131.55 Aligned_cols=147 Identities=14% Similarity=0.006 Sum_probs=114.4
Q ss_pred eeeeecCCeEEEEecCce------------eeeccccccc-ccccccCC-CCcccccCcccCCCCccccccCCCCCCCCC
Q psy15204 18 ICLFIIPKLTIIISDANV------------KTDVSSNPSA-SAADQSFP-DTSGFAVPECIPTKTPTQKKLGPSSSTPVT 83 (232)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (232)
..+.+++||.|.+.|.+. ++.|+|++|| +.+++|.| |++|++++-- ..+..
T Consensus 231 ~~G~~~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~a~~G~~v~~~l~~~--------~~~~~------- 295 (403)
T 3sjy_A 231 IQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRFGDEEFKEAKPGGLVAIGTYLD--------PSLTK------- 295 (403)
T ss_dssp EESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTEEESEECSSSCEEEEESSC--------HHHHG-------
T ss_pred EeCEEecCCEEEEeCCcccccccccccccccEEEEEEEECCEEcCEEeCCCEEEEEeccc--------cccch-------
Confidence 357899999999999874 7999999997 69999999 9999987521 01111
Q ss_pred CCCCCCCcccccccccccCCccCCCCCCCCcceEEEEEEeCC-------CccCcCCCCeEEEEEecceEEEEEEEeeeec
Q psy15204 84 PRSQSPSTPVSRSRSPATPTCTSPTPDQEPSRSVKLVKLSNV-------YQVGFIKELKVGMHQQSLAESAVITRLLSQV 156 (232)
Q Consensus 84 ~~~~~~~~~v~rg~v~a~p~~~~~~p~~~as~~a~Iv~L~~e-------~~~PI~~Gy~p~Lh~~T~~v~~rI~kI~~kI 156 (232)
.-+.||||++.|+.. |.....|+++++||+.. .+.||..||+|.+|++|.++.|+|..+..
T Consensus 296 -------~d~~~G~vl~~~~~~---~~~~~~~~a~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~gt~~~~~~v~~~~~-- 363 (403)
T 3sjy_A 296 -------ADNLLGSIITLADAE---VPVLWNIRIKYNLLERVVGAKEMLKVDPIRAKETLMLSVGSSTTLGIVTSVKK-- 363 (403)
T ss_dssp -------GGTTTTCEEEETTCC---CCEEEEEEEEEEECSBCTTCSSCCBCCCCCTTCEEEEEETTEEEEEEEEEECS--
T ss_pred -------hhhccccEEeCCCCC---CcceeEEEEEEEEEeccccccccccCCCCCCCCEEEEEECccEEEEEEEEecC--
Confidence 236799999999853 33344689999999521 17899999999999999999999998721
Q ss_pred ccCccceeccCCcccCCCCeeEEEEEeCceEEeeeccCCCceeeEEE-EECC---CeEEEEEEE
Q psy15204 157 HKTSGEVIRKKPRALTKSMSAQVVIETVRPMCVELYRDVKELGRFML-RVSG---VTIAAGLIT 216 (232)
Q Consensus 157 Dk~Tg~~~kk~pk~Lk~GD~A~V~I~l~kPI~vE~fs~~p~LGRFiL-RD~g---~TVAaGiI~ 216 (232)
| .+++.+.+|+|++..+ -||+| |+.+ +.+|.|.|+
T Consensus 364 ------------------~--~~~~~l~~p~~~~~g~-----~r~~i~r~~~~~~r~~g~g~i~ 402 (403)
T 3sjy_A 364 ------------------D--EIEVELRRPVAVWSNN-----IRTVISRQIAGRWRMIGWGLVE 402 (403)
T ss_dssp ------------------S--EEEEEEEEEEECCSSS-----CEEEEEEEETTEEEEEEEEEEE
T ss_pred ------------------c--eEEEEeCCcEeeccCC-----EEEEEEEEeCCcEEEEEEEEEE
Confidence 1 4788888999999873 38997 6544 699999885
No 18
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=98.01 E-value=1.5e-06 Score=69.25 Aligned_cols=46 Identities=9% Similarity=0.031 Sum_probs=42.1
Q ss_pred heeeeeecCCeEEEEecCc-eeeeccccccc-ccccccCC-CCcccccCccc
Q psy15204 16 SWICLFIIPKLTIIISDAN-VKTDVSSNPSA-SAADQSFP-DTSGFAVPECI 64 (232)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~ 64 (232)
.=+++.||||+.| |.+ ..++|+|++|+ +++++|.| ||++|+++++.
T Consensus 54 rVe~G~LK~G~~V---Pg~~~vg~VkSIE~~~e~v~eA~~GdnVai~Ikg~~ 102 (116)
T 1xe1_A 54 TVESGMIGVGFKV---KGPSGIGGIVRIERNREKVEFAIAGDRIGISIEGKI 102 (116)
T ss_dssp EEEEEEEETTCEE---ECSSCEEEEEEEEETTEEESEEETTCEEEEEEESCC
T ss_pred EEeEEEEcCCCCc---CCCceEEEEEEEEECCcCcCCcCCCCEEEEEEECCc
Confidence 4578999999999 999 89999999997 79999999 99999999974
No 19
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A
Probab=56.95 E-value=2 Score=33.32 Aligned_cols=42 Identities=17% Similarity=0.030 Sum_probs=33.0
Q ss_pred eecCCeEEEEecCceeeeccccccc---ccccccCC-CCcccccCc
Q psy15204 21 FIIPKLTIIISDANVKTDVSSNPSA---SAADQSFP-DTSGFAVPE 62 (232)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~ 62 (232)
-++|||+|.|+..-+.++|..+--+ +++-++.+ +++|..+..
T Consensus 33 ~ikvGD~I~f~~~~l~~~V~~v~~Y~sF~~ll~~e~~~~~~p~~~s 78 (109)
T 2z0t_A 33 QIKPGDIIIFEGGKLKVKVKGIRVYSSFKEMLEKEGIENVLPGVKS 78 (109)
T ss_dssp GCCTTCEEEEGGGTEEEEEEEEEEESCHHHHHHHHCHHHHSTTCCC
T ss_pred cCCCCCEEEECCCEEEEEEEEEEccCCHHHHHHhcChhhcCCCCCC
Confidence 3789999999877889988888775 47777777 777776643
No 20
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=40.09 E-value=1e+02 Score=26.50 Aligned_cols=61 Identities=7% Similarity=-0.095 Sum_probs=45.2
Q ss_pred CCccCcCCCCeEEEEEe--cceEEEEEEEeeeecccCcccee----ccC-CcccCCCCeeEEEEEeCc
Q psy15204 125 VYQVGFIKELKVGMHQQ--SLAESAVITRLLSQVHKTSGEVI----RKK-PRALTKSMSAQVVIETVR 185 (232)
Q Consensus 125 e~~~PI~~Gy~p~Lh~~--T~~v~~rI~kI~~kIDk~Tg~~~----kk~-pk~Lk~GD~A~V~I~l~k 185 (232)
..-..+..|.+..+.+. .....++|..|...+|..++... -++ ...|++|+.+.+.|....
T Consensus 217 ~~~~~i~~G~~v~v~~~~~~~~~~g~v~~i~~~~d~~~~~~~v~~~~~~~~~~l~~G~~~~v~i~~~~ 284 (359)
T 3lnn_A 217 KDLGHVYVGQSATVKFDAYDDPQPGKVRYVGQILDADTRTTKVRMVFDNPDGRLRPGMFAQATFLSQP 284 (359)
T ss_dssp GGSTTCCTTCEEEEBCSSCSSCEEEEEEECCCCCCTTSCCEEEEEEEECSSCCCCTTCEEEEEEECCC
T ss_pred HHHhhCCCCCeEEEEEcCCCCcEEEEEEEEecccCCCCcEEEEEEEecCCCCCcCCCCEEEEEEecCC
Confidence 34556889999888766 45678999999888887775322 123 345999999999998863
No 21
>1xne_A Hypothetical protein PF0469; GFT structural genomics, protein structure initiative, NESG, PFR14, alpha and beta protein; NMR {Pyrococcus furiosus} SCOP: b.122.1.6
Probab=37.26 E-value=8.2 Score=29.96 Aligned_cols=40 Identities=20% Similarity=0.102 Sum_probs=31.4
Q ss_pred ecCCeEEEEecCceeeeccccccc---ccccccCC-CCcccccCc
Q psy15204 22 IIPKLTIIISDANVKTDVSSNPSA---SAADQSFP-DTSGFAVPE 62 (232)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~ 62 (232)
++|||+|.|.. -+.++|..+--+ +++-++.+ +++|..+..
T Consensus 35 i~vGD~I~f~~-~l~~~V~~v~~Y~sF~~ll~~e~~~~v~p~~~s 78 (113)
T 1xne_A 35 IKRGDKIIFND-LIPAEVVEVKKYETFRQVLREEPIDKIFPDKPS 78 (113)
T ss_dssp CCTTCEEEETT-TEEEEEEEEEECSSHHHHHHHSCHHHHCSSCCC
T ss_pred cCCCCEEEEcc-ceEEEEEEEEecCCHHHHHHhcCHHhcCCCCCC
Confidence 59999999988 788888777665 57888888 888876643
No 22
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=31.38 E-value=49 Score=29.91 Aligned_cols=57 Identities=14% Similarity=0.059 Sum_probs=42.7
Q ss_pred ccCcCCCCeEEEEEec---ceEEEEEEEeeeecccCcccee----ccCC-cccCCCCeeEEEEEe
Q psy15204 127 QVGFIKELKVGMHQQS---LAESAVITRLLSQVHKTSGEVI----RKKP-RALTKSMSAQVVIET 183 (232)
Q Consensus 127 ~~PI~~Gy~p~Lh~~T---~~v~~rI~kI~~kIDk~Tg~~~----kk~p-k~Lk~GD~A~V~I~l 183 (232)
-..+..|.+..+.+.. ....++|..|...+|..++... -+++ ..|++|+.+.++|..
T Consensus 255 ~~~i~~G~~v~v~~~~~p~~~~~G~V~~I~p~~d~~t~t~~v~i~l~n~~~~L~pGm~v~v~i~~ 319 (413)
T 3ne5_B 255 AWLVKDASQFTLTVPARPDKTLTIRKWTLLPGVDAATRTLQLRLEVDNADEALKPGMNAWLQLNT 319 (413)
T ss_dssp HHHHTTCCCEEEEETTEEEEEEEECCCEECSCCBTTTTEEEEEEEEECTTCCSCTTCEEEEEEEE
T ss_pred HHhccCCCeEEEEEecCCCcEEEEEEEEEeCccCCCCcEEEEEEEEECCCCccCCCCEEEEEEee
Confidence 4458899999988763 4578999999888898776322 1343 469999999999974
Done!