RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15204
(232 letters)
>gnl|CDD|239760 cd04093, HBS1_C, HBS1_C: this family represents the C-terminal
domain of Hsp70 subfamily B suppressor 1 (HBS1) which is
homologous to the domain III of EF-1alpha. This group
contains proteins similar to yeast Hbs1, a G protein
known to be important for efficient growth and protein
synthesis under conditions of limiting translation
initiation and, to associate with Dom34. It has been
speculated that yeast Hbs1 and Dom34 proteins may
function as part of a complex with a role in gene
expression.
Length = 107
Score = 108 bits (273), Expect = 1e-30
Identities = 43/81 (53%), Positives = 60/81 (74%)
Query: 138 MHQQSLAESAVITRLLSQVHKTSGEVIRKKPRALTKSMSAQVVIETVRPMCVELYRDVKE 197
+ + SL E A IT+L+S + K++GEV +KKPR LTK +A V IE RP+ +EL++D KE
Sbjct: 27 LFRHSLKEPATITKLVSILDKSTGEVSKKKPRCLTKGQTAIVEIELERPIPLELFKDNKE 86
Query: 198 LGRFMLRVSGVTIAAGLITKV 218
LGR +LR G TIAAGL+T++
Sbjct: 87 LGRVVLRRDGETIAAGLVTEI 107
>gnl|CDD|239675 cd03704, eRF3c_III, This family represents eEF1alpha-like
C-terminal region of eRF3 homologous to the domain III
of EF-Tu. eRF3 is a GTPase, which enhances the
termination efficiency by stimulating the eRF1 activity
in a GTP-dependent manner. The C-terminal region is
responsible for translation termination activity and is
essential for viability. Saccharomyces cerevisiae eRF3
(Sup35p) is a translation termination factor which is
divided into three regions N, M and a C-terminal
eEF1a-like region essential for translation termination.
Sup35NM is a non-pathogenic prion-like protein with
the property of aggregating into polymer-like fibrils.
Length = 108
Score = 73.1 bits (180), Expect = 9e-17
Identities = 28/81 (34%), Positives = 46/81 (56%)
Query: 138 MHQQSLAESAVITRLLSQVHKTSGEVIRKKPRALTKSMSAQVVIETVRPMCVELYRDVKE 197
+H + E I +L++ + K +G+ +K+PR + M +ET P+C+E + D +
Sbjct: 28 LHIHTAVEEVTIKKLIALIDKKTGKKSKKRPRFVKSGMKVIARLETTGPICLEKFEDFPQ 87
Query: 198 LGRFMLRVSGVTIAAGLITKV 218
LGRF LR G TIA G + K+
Sbjct: 88 LGRFTLRDEGKTIAIGKVLKL 108
>gnl|CDD|239676 cd03705, EF1_alpha_III, Domain III of EF-1. Eukaryotic elongation
factor 1 (EF-1) is responsible for the GTP-dependent
binding of aminoacyl-tRNAs to ribosomes. EF-1 is
composed of four subunits: the alpha chain, which binds
GTP and aminoacyl-tRNAs, the gamma chain that probably
plays a role in anchoring the complex to other cellular
components and the beta and delta (or beta') chains.
This family is the alpha subunit, and represents the
counterpart of bacterial EF-Tu for the archaea (aEF-1
alpha) and eukaryotes (eEF-1 alpha).
Length = 104
Score = 61.4 bits (150), Expect = 2e-12
Identities = 20/67 (29%), Positives = 37/67 (55%)
Query: 149 ITRLLSQVHKTSGEVIRKKPRALTKSMSAQVVIETVRPMCVELYRDVKELGRFMLRVSGV 208
+LS++ +G+ + + P+ L +A V I +P+ VE + + LGRF +R G
Sbjct: 38 FAEILSKIDPRTGKKLEENPKFLKSGDAAIVKIVPQKPLVVETFSEYPPLGRFAVRDMGQ 97
Query: 209 TIAAGLI 215
T+A G++
Sbjct: 98 TVAVGIV 104
>gnl|CDD|227581 COG5256, TEF1, Translation elongation factor EF-1alpha (GTPase)
[Translation, ribosomal structure and biogenesis].
Length = 428
Score = 65.4 bits (160), Expect = 2e-12
Identities = 28/81 (34%), Positives = 48/81 (59%)
Query: 138 MHQQSLAESAVITRLLSQVHKTSGEVIRKKPRALTKSMSAQVVIETVRPMCVELYRDVKE 197
+H + + I LLS++ +G+ + + P+ L + +A V IE +P+C+E ++ +
Sbjct: 346 LHAHTAQVACRIAELLSKLDPRTGKKLEENPQFLKRGDAAIVKIEPEKPLCLEKVSEIPQ 405
Query: 198 LGRFMLRVSGVTIAAGLITKV 218
LGRF LR G TIAAG + +V
Sbjct: 406 LGRFALRDMGQTIAAGKVLEV 426
>gnl|CDD|237055 PRK12317, PRK12317, elongation factor 1-alpha; Reviewed.
Length = 425
Score = 59.9 bits (146), Expect = 2e-10
Identities = 21/70 (30%), Positives = 41/70 (58%)
Query: 149 ITRLLSQVHKTSGEVIRKKPRALTKSMSAQVVIETVRPMCVELYRDVKELGRFMLRVSGV 208
L+ ++ +G+V + P+ + +A V I+ +P+ +E +++ +LGRF +R G
Sbjct: 351 FEELVKKLDPRTGQVAEENPQFIKTGDAAIVKIKPTKPLVIEKVKEIPQLGRFAIRDMGQ 410
Query: 209 TIAAGLITKV 218
TIAAG++ V
Sbjct: 411 TIAAGMVIDV 420
>gnl|CDD|238771 cd01513, Translation_factor_III, Domain III of Elongation factor
(EF) Tu (EF-TU) and EF-G. Elongation factors (EF) EF-Tu
and EF-G participate in the elongation phase during
protein biosynthesis on the ribosome. Their functional
cycles depend on GTP binding and its hydrolysis. The
EF-Tu complexed with GTP and aminoacyl-tRNA delivers
tRNA to the ribosome, whereas EF-G stimulates
translocation, a process in which tRNA and mRNA
movements occur in the ribosome. Experimental data
showed that: (1) intrinsic GTPase activity of EF-G is
influenced by excision of its domain III; (2) that EF-G
lacking domain III has a 1,000-fold decreased GTPase
activity on the ribosome and, a slightly decreased
affinity for GTP; and (3) EF-G lacking domain III does
not stimulate translocation, despite the physical
presence of domain IV which is also very important for
translocation. These findings indicate an essential
contribution of domain III to activation of GTP
hydrolysis. Domains III and V of EF-G have the same fold
(although they are not completely superimposable), the
double split beta-alpha-beta fold. This fold is observed
in a large number of ribonucleotide binding proteins and
is also referred to as the ribonucleoprotein (RNP) or
RNA recognition (RRM) motif. This domain III is found
in several elongation factors, as well as in peptide
chain release factors and in GT-1 family of GTPase
(GTPBP1).
Length = 102
Score = 52.8 bits (127), Expect = 2e-09
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 135 KVGMHQQSLAESAVITRLLSQVHKTSGEVIRKKPRALTKSMSAQVVIETVRPMCVELYRD 194
K ++ + I +LLS+V + E +K P L V +E +P+ +E + +
Sbjct: 24 KPVLNVGTAHVPGRIAKLLSKVDGKTEE--KKPPEFLKSGERGIVEVELQKPVALETFSE 81
Query: 195 VKELGRFMLRVSGVTIAAGLI 215
+E GRF LR G T+ AGLI
Sbjct: 82 NQEGGRFALRDGGRTVGAGLI 102
>gnl|CDD|129574 TIGR00483, EF-1_alpha, translation elongation factor EF-1 alpha.
This model represents the counterpart of bacterial EF-Tu
for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1
alpha). The trusted cutoff is set fairly high so that
incomplete sequences will score between suggested and
trusted cutoff levels [Protein synthesis, Translation
factors].
Length = 426
Score = 54.9 bits (132), Expect = 7e-09
Identities = 23/67 (34%), Positives = 39/67 (58%)
Query: 152 LLSQVHKTSGEVIRKKPRALTKSMSAQVVIETVRPMCVELYRDVKELGRFMLRVSGVTIA 211
LL + +G+V+ + P+ L +A V + +PM +E +++ LGRF +R G T+A
Sbjct: 356 LLKKNDPRTGQVLEENPQFLKTGDAAIVKFKPTKPMVIEAVKEIPPLGRFAIRDMGQTVA 415
Query: 212 AGLITKV 218
AG+I V
Sbjct: 416 AGMIIDV 422
>gnl|CDD|185474 PTZ00141, PTZ00141, elongation factor 1- alpha; Provisional.
Length = 446
Score = 52.8 bits (127), Expect = 3e-08
Identities = 23/67 (34%), Positives = 41/67 (61%)
Query: 152 LLSQVHKTSGEVIRKKPRALTKSMSAQVVIETVRPMCVELYRDVKELGRFMLRVSGVTIA 211
+ S++ + SG+V+ + P+A+ +A V + +PMCVE++ + LGRF +R T+A
Sbjct: 363 IESKIDRRSGKVLEENPKAIKSGDAAIVKMVPTKPMCVEVFNEYPPLGRFAVRDMKQTVA 422
Query: 212 AGLITKV 218
G+I V
Sbjct: 423 VGVIKSV 429
>gnl|CDD|217387 pfam03143, GTP_EFTU_D3, Elongation factor Tu C-terminal domain.
Elongation factor Tu consists of three structural
domains, this is the third domain. This domain adopts a
beta barrel structure. This the third domain is involved
in binding to both charged tRNA and binding to EF-Ts
pfam00889.
Length = 91
Score = 42.1 bits (100), Expect = 2e-05
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Query: 161 GEVIR-KKPRALTKSMSAQVVIETVRPMCVELYRDVKELGRFMLRVSGVTIAAGLITKVI 219
G+ I K + +A V +E ++P+ VE + RF +R G T+A G++T+V+
Sbjct: 38 GKFILPGKKEFVMPGDNAIVTVELIKPIAVEKGQ------RFAIREGGRTVAVGVVTEVL 91
>gnl|CDD|239762 cd04095, CysN_NoDQ_III, TCysN_NoDQ_II: This subfamily represents
the domain II of the large subunit of ATP sulfurylase
(ATPS): CysN or the N-terminal portion of NodQ, found
mainly in proteobacteria and homologous to the domain II
of EF-Tu. Escherichia coli ATPS consists of CysN and a
smaller subunit CysD and CysN. ATPS produces
adenosine-5'-phosphosulfate (APS) from ATP and sulfate,
coupled with GTP hydrolysis. In the subsequent reaction
APS is phosphorylated by an APS kinase (CysC), to
produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for
use in amino acid (aa) biosynthesis. The Rhizobiaceae
group (alpha-proteobacteria) appears to carry out the
same chemistry for the sufation of a nodulation factor.
In Rhizobium meliloti, a the hererodimeric complex
comprised of NodP and NodQ appears to possess both ATPS
and APS kinase activities. The N and C termini of NodQ
correspond to CysN and CysC, respectively. Other
eubacteria, Archaea, and eukaryotes use a different ATP
sulfurylase, which shows no aa sequence similarity to
CysN or NodQ. CysN and the N-terminal portion of NodQ
show similarity to GTPases involved in translation, in
particular, EF-Tu and EF-1alpha.
Length = 103
Score = 41.7 bits (99), Expect = 2e-05
Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 147 AVITRLLSQVHKTSGEVIRKKPRALTKSMSAQVVIETVRPMCVELYRDVKELGRFML--R 204
A +T + +V + E + L + +V + +P+ + YR+ + G F+L R
Sbjct: 35 ATVTAIKYRVDVNTLE--HEAADTLELNDIGRVELSLSKPLAFDPYRENRATGSFILIDR 92
Query: 205 VSGVTIAAGLI 215
++ T+ AG+I
Sbjct: 93 LTNATVGAGMI 103
>gnl|CDD|165621 PLN00043, PLN00043, elongation factor 1-alpha; Provisional.
Length = 447
Score = 42.8 bits (100), Expect = 9e-05
Identities = 21/69 (30%), Positives = 38/69 (55%)
Query: 150 TRLLSQVHKTSGEVIRKKPRALTKSMSAQVVIETVRPMCVELYRDVKELGRFMLRVSGVT 209
+L+++ + SG+ + K+P+ L + V + +PM VE + + LGRF +R T
Sbjct: 361 AEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQT 420
Query: 210 IAAGLITKV 218
+A G+I V
Sbjct: 421 VAVGVIKSV 429
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase
inhibitor.
Length = 670
Score = 35.8 bits (82), Expect = 0.017
Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 9/111 (8%)
Query: 16 SWICLFIIPKLTIIISDANVKTDVSSNPSASAADQSFPDTSGFAVPECIPTKTPTQKKLG 75
+WI +P + + + T+ + SA++++ +F S V P+ +P LG
Sbjct: 548 AWIPGKGVPYIPGLFAGNPGSTNSTPTGSAASSNTTFSSDSPSTV--VAPSTSPPAGHLG 605
Query: 76 PSSSTPVTPRSQSPSTPVSRSRSPAT-------PTCTSPTPDQEPSRSVKL 119
+TP S S S P S SP+T + T P S+K+
Sbjct: 606 SPPATPSKIVSPSTSPPASHLGSPSTTPSSPESSIKVASTETASPESSIKV 656
>gnl|CDD|225448 COG2895, CysN, GTPases - Sulfate adenylate transferase subunit 1
[Inorganic ion transport and metabolism].
Length = 431
Score = 35.4 bits (82), Expect = 0.019
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 177 AQVVIETVRPMCVELYRDVKELGRFML--RVSGVTIAAGLITK 217
+V I +P+ + Y + + G F+L R++ T+ AG+I
Sbjct: 372 GRVRISFDKPIAFDAYAENRATGSFILIDRLTNGTVGAGMILA 414
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 585
Score = 34.0 bits (78), Expect = 0.058
Identities = 12/61 (19%), Positives = 17/61 (27%), Gaps = 2/61 (3%)
Query: 53 PDTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPSTPVSRSRSPATPTCTSPTPDQE 112
P + +P + PS+ + P R ATP P P
Sbjct: 362 PVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPV--RETATPPPVPPRPVAP 419
Query: 113 P 113
P
Sbjct: 420 P 420
Score = 30.5 bits (69), Expect = 0.71
Identities = 16/94 (17%), Positives = 26/94 (27%), Gaps = 10/94 (10%)
Query: 29 IISDANVKTDVSSNPSASAADQSFPDTSG---FAVPECIPTKTPTQKKLGPSSSTP---- 81
++ +A + + P S A IP K P ++ P P
Sbjct: 359 LLVPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVA 418
Query: 82 ---VTPRSQSPSTPVSRSRSPATPTCTSPTPDQE 112
+P + P T P P +E
Sbjct: 419 PPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPKE 452
Score = 29.4 bits (66), Expect = 1.6
Identities = 12/82 (14%), Positives = 22/82 (26%), Gaps = 1/82 (1%)
Query: 33 ANVKTDVSSNPSASAADQSFPDTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPSTP 92
A ++ + P+ A + S P P+ P + +P
Sbjct: 354 AVIEALLVPVPAPQPAKPTAAAPSP-VRPTPAPSTRPKAAAAANIPPKEPVRETATPPPV 412
Query: 93 VSRSRSPATPTCTSPTPDQEPS 114
R +P P P +
Sbjct: 413 PPRPVAPPVPHTPESAPKLTRA 434
Score = 29.0 bits (65), Expect = 2.2
Identities = 12/42 (28%), Positives = 15/42 (35%)
Query: 76 PSSSTPVTPRSQSPSTPVSRSRSPATPTCTSPTPDQEPSRSV 117
PS P S P + + P P + TP P R V
Sbjct: 376 PSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPV 417
>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase;
Provisional.
Length = 418
Score = 33.5 bits (77), Expect = 0.072
Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 7/90 (7%)
Query: 38 DVSSNPSASAADQSFPDTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPSTPVSRSR 97
++ + + AA + + K P++S P P + P P ++
Sbjct: 117 EIDTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAK 176
Query: 98 SPATPTCTSPTPDQEPSRSVKLVKLSNVYQ 127
P TP V +S + Q
Sbjct: 177 PPPTPV-------ARADPRETRVPMSRMRQ 199
>gnl|CDD|226406 COG3889, COG3889, Predicted solute binding protein [General
function prediction only].
Length = 872
Score = 33.3 bits (76), Expect = 0.11
Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 1/91 (1%)
Query: 24 PKLTIIISDANVKTDVSSNPSASAADQSFPDTSGFAVPECIPTKTPTQKKLGPSSSTPVT 83
I + VK + S + + T VP+ PTKT T S+T +
Sbjct: 740 ENWGFIPTTKRVKVRIMDPASGTGTSITTSGTFTAEVPQS-PTKTETTLSYSAYSNTSIL 798
Query: 84 PRSQSPSTPVSRSRSPATPTCTSPTPDQEPS 114
+ S + +++ T + SPT P+
Sbjct: 799 IETTSVVITKTVTQTQTTTSSPSPTQTTSPT 829
>gnl|CDD|223839 COG0768, FtsI, Cell division protein FtsI/penicillin-binding
protein 2 [Cell envelope biogenesis, outer membrane].
Length = 599
Score = 32.4 bits (74), Expect = 0.17
Identities = 20/107 (18%), Positives = 34/107 (31%), Gaps = 8/107 (7%)
Query: 113 PSRSVKLVKLSNVYQVGFIKELKVGMHQQSLAESAVIT-------RLLSQVHKTSGEVIR 165
PSR ++ + + L V Q + A + + L+ + GE +
Sbjct: 419 PSREPWRWGPIDLATLSIGQGLLVTPLQLAQAYATIANGGKLVKPHLVKGIEDPVGENKK 478
Query: 166 KKPRALTKSMSAQVVIETVRPMCVELYRDVKELGRFMLRVSGVTIAA 212
+ P + +S E VR + D V G IA
Sbjct: 479 EPPVLKKRVIS-PETAEKVREGMRAVVNDGGGGTGKAAAVPGYRIAG 524
>gnl|CDD|180120 PRK05506, PRK05506, bifunctional sulfate adenylyltransferase
subunit 1/adenylylsulfate kinase protein; Provisional.
Length = 632
Score = 31.8 bits (73), Expect = 0.26
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 181 IETVRPMCVELYRDVKELGRFML--RVSGVTIAAGLITKVIFDQCGSTN 227
+ T P+ + Y + G F+L R++ T+ AG+I F +TN
Sbjct: 394 LSTDAPIAFDPYARNRTTGSFILIDRLTNATVGAGMI---DFALRRATN 439
>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 31.8 bits (72), Expect = 0.28
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 65 PTKTPTQKKLGPSSSTPVTPRSQSPSTPVSRSRSPATPTC--TSPTPDQEP--SRSVKL 119
P +P KK P P R P+ P + PA ++PTP+Q+P +RS L
Sbjct: 384 PAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVARSAPL 442
>gnl|CDD|223128 COG0050, TufB, GTPases - translation elongation factors
[Translation, ribosomal structure and biogenesis].
Length = 394
Score = 31.5 bits (72), Expect = 0.30
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 6/43 (13%)
Query: 177 AQVVIETVRPMCVELYRDVKELGRFMLRVSGVTIAAGLITKVI 219
++V+E + P+ +E E RF +R G T+ AG++TK+I
Sbjct: 357 VKMVVELIHPIAME------EGLRFAIREGGRTVGAGVVTKII 393
>gnl|CDD|236843 PRK11092, PRK11092, bifunctional (p)ppGpp synthetase II/
guanosine-3',5'-bis pyrophosphate
3'-pyrophosphohydrolase; Provisional.
Length = 702
Score = 31.6 bits (72), Expect = 0.38
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 120 VKLSNVYQVGFIKELKVGM--HQQSLAE-SAVITRLLSQVHKTSGE 162
V+ + FI E+KV M HQ +LA +A I S + + E
Sbjct: 615 VEWDKETEQEFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTE 660
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.
Length = 1352
Score = 31.3 bits (71), Expect = 0.52
Identities = 13/86 (15%), Positives = 27/86 (31%), Gaps = 14/86 (16%)
Query: 31 SDANVKTDVSSNPSASAADQSFPDTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPS 90
+ ++ + S+ S++++ + + GPS S +P P
Sbjct: 314 ASSSSSSSRESSSSSTSSSSESSRGAAVS--------------PGPSPSRSPSPSRPPPP 359
Query: 91 TPVSRSRSPATPTCTSPTPDQEPSRS 116
S R P+ +P R
Sbjct: 360 ADPSSPRKRPRPSRAPSSPAASAGRP 385
Score = 29.8 bits (67), Expect = 1.6
Identities = 20/95 (21%), Positives = 31/95 (32%), Gaps = 8/95 (8%)
Query: 31 SDANVKTDVSSNPSASAADQSFPDTSGFAVPECIPTKTPTQKKLGP--------SSSTPV 82
DA + SS+ +S + P I T + G +S+
Sbjct: 230 DDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSS 289
Query: 83 TPRSQSPSTPVSRSRSPATPTCTSPTPDQEPSRSV 117
+PR +SPS S S P+ + SR
Sbjct: 290 SPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRES 324
>gnl|CDD|215382 PLN02712, PLN02712, arogenate dehydrogenase.
Length = 667
Score = 31.1 bits (70), Expect = 0.55
Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 17/90 (18%)
Query: 68 TPTQKKLGPSSSTPVTPRSQSPSTPVSRSRSPATPTCTSPTPDQEPSRSVKLVKLSNVYQ 127
P Q PS P + SP +S AT T P P+ P + +L +
Sbjct: 4 PPPQPP--PSLFPTSKPTTMSPRLSLSIKSQSATATDKQPLPNSNPDNTTQL----KIAI 57
Query: 128 VGFIKELKVGMHQQSLAESAVITRLLSQVH 157
+GF G + Q LA++ L+SQ H
Sbjct: 58 IGF------GNYGQFLAKT-----LISQGH 76
>gnl|CDD|236792 PRK10905, PRK10905, cell division protein DamX; Validated.
Length = 328
Score = 30.7 bits (69), Expect = 0.64
Identities = 11/46 (23%), Positives = 19/46 (41%)
Query: 64 IPTKTPTQKKLGPSSSTPVTPRSQSPSTPVSRSRSPATPTCTSPTP 109
I K P TP+ P+ PV+ +++PA + +P
Sbjct: 163 IEPKKPQATAKTEPKPVAQTPKRTEPAAPVASTKAPAATSTPAPKE 208
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 30.7 bits (69), Expect = 0.69
Identities = 24/82 (29%), Positives = 30/82 (36%), Gaps = 4/82 (4%)
Query: 47 AADQSFPDTSGFAVPECIPTKTPT---QKKLGPSSSTPVTPRSQSPSTPVSRSRSPATPT 103
A T FA+P P + P P P P+ Q P P R + P PT
Sbjct: 2887 ARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPT 2946
Query: 104 CTSPTPDQEPSRSVKLVKLSNV 125
T P EPS +V L +
Sbjct: 2947 -TDPAGAGEPSGAVPQPWLGAL 2967
Score = 29.1 bits (65), Expect = 2.6
Identities = 16/74 (21%), Positives = 21/74 (28%), Gaps = 13/74 (17%)
Query: 43 PSASAADQSFPDTSGFAVPECIP-------TKTPTQKKLGPSSSTPVTPRSQSPSTPVSR 95
+A D+S P P P T + P S+ P P
Sbjct: 2559 APPAAPDRSVP------PPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPA 2612
Query: 96 SRSPATPTCTSPTP 109
SP P +P P
Sbjct: 2613 PPSPLPPDTHAPDP 2626
Score = 28.8 bits (64), Expect = 3.1
Identities = 12/69 (17%), Positives = 17/69 (24%)
Query: 38 DVSSNPSASAADQSFPDTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPSTPVSRSR 97
D + + A P + P TP S P P + P P +
Sbjct: 403 DQTRPAAPVPASVPTPAPTPVPASAPPPPATPLPSAEPGSDDGPAPPPERQPPAPATEPA 462
Query: 98 SPATPTCTS 106
T
Sbjct: 463 PDDPDDATR 471
Score = 28.4 bits (63), Expect = 3.8
Identities = 16/75 (21%), Positives = 25/75 (33%), Gaps = 1/75 (1%)
Query: 40 SSNPSASAADQSFPDTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPSTPVSRSRSP 99
S +P+A A + P A P + T + P P++ P P + P
Sbjct: 2868 SRSPAAKPAAPARPPVRRLARPA-VSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPP 2926
Query: 100 ATPTCTSPTPDQEPS 114
P P P +
Sbjct: 2927 PQPQPPPPPPPRPQP 2941
Score = 28.4 bits (63), Expect = 4.4
Identities = 19/88 (21%), Positives = 28/88 (31%), Gaps = 4/88 (4%)
Query: 31 SDANVKTDVSSNPSASAADQSFPDTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPS 90
D P+A+ + P +G P T GP + S +P
Sbjct: 2802 WDPADPPAAVLAPAAALPPAASP--AGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPG 2859
Query: 91 TPVSRSRSPATPTCTSP-TPDQEPSRSV 117
V R R P+ P P + P R +
Sbjct: 2860 GDVRR-RPPSRSPAAKPAAPARPPVRRL 2886
Score = 27.6 bits (61), Expect = 7.4
Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 5/71 (7%)
Query: 43 PSASAADQSFPDTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPSTPVSRSRSPATP 102
P+ A + P G A P + P TP P +R P T
Sbjct: 2710 PAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATP-----GGPARPARPPTTA 2764
Query: 103 TCTSPTPDQEP 113
+P P P
Sbjct: 2765 GPPAPAPPAAP 2775
Score = 27.2 bits (60), Expect = 8.9
Identities = 15/73 (20%), Positives = 23/73 (31%)
Query: 43 PSASAADQSFPDTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPSTPVSRSRSPATP 102
P +AA Q+ P P +P T + P T +P+ P + + P
Sbjct: 2723 PGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRR 2782
Query: 103 TCTSPTPDQEPSR 115
SR
Sbjct: 2783 LTRPAVASLSESR 2795
>gnl|CDD|183756 PRK12799, motB, flagellar motor protein MotB; Reviewed.
Length = 421
Score = 30.1 bits (67), Expect = 0.90
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Query: 23 IPKLTIIISDANVKTDVSSNPSASAADQSFPDTSGFAVPECIPTKTPTQKKLGPSSSTPV 82
+ ++ SD + V+ + Q P ++ T T GP++S P
Sbjct: 348 LSSAGVLPSDVTLPGTVALPAAEPVNMQPQPMSTTETQQSSTGNITSTAN--GPTTSLPA 405
Query: 83 TPRSQSPSTPVSR 95
P S P +P SR
Sbjct: 406 APASNIPVSPTSR 418
>gnl|CDD|216860 pfam02063, MARCKS, MARCKS family.
Length = 296
Score = 30.2 bits (67), Expect = 0.93
Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 5/90 (5%)
Query: 31 SDANVKTDVSSNPSASAADQSFPDTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQS-- 88
++A K ++ +N SA A + + + A E T+ P+ + P P S +
Sbjct: 50 AEAGAKEELQANGSAPAEETGKEEAASAAAAEEKEAAASTEPDKEPAEAEPAEPASPAEA 109
Query: 89 ---PSTPVSRSRSPATPTCTSPTPDQEPSR 115
+T ++ ATP+ +S TP ++ R
Sbjct: 110 EGEAATSTEKAEDGATPSPSSETPKKKKKR 139
>gnl|CDD|177010 CHL00071, tufA, elongation factor Tu.
Length = 409
Score = 29.9 bits (68), Expect = 1.0
Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 6/42 (14%)
Query: 179 VVIETVRPMCVELYRDVKELGRFMLRVSGVTIAAGLITKVIF 220
+ +E + P+ +E K + RF +R G T+ AG+++K++
Sbjct: 374 MTVELIYPIAIE-----KGM-RFAIREGGRTVGAGVVSKILK 409
>gnl|CDD|235349 PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.
Length = 474
Score = 29.9 bits (68), Expect = 1.0
Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 177 AQVVIETVRPMCVELYRDVKELGRFML--RVSGVTIAAGLIT 216
V + P+ ++ Y+ + G F+ R++ VT+ AG++
Sbjct: 394 GLVELTFDEPLVLDPYQQNRVTGGFIFIDRLTNVTVGAGMVR 435
>gnl|CDD|220972 pfam11081, DUF2890, Protein of unknown function (DUF2890). This
family is conserved in dsDNA adenoviruses of
vertebrates. The function is not known.
Length = 172
Score = 29.5 bits (66), Expect = 1.1
Identities = 10/50 (20%), Positives = 13/50 (26%)
Query: 60 VPECIPTKTPTQKKLGPSSSTPVTPRSQSPSTPVSRSRSPATPTCTSPTP 109
V E + SSS +P R T +PT
Sbjct: 55 VEEETAASSKAPSSSSKSSSQETISIPPTPPARRPSRRWDQTGRFPNPTT 104
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 30.0 bits (67), Expect = 1.3
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 5/89 (5%)
Query: 25 KLTIIISDANVKTDVSSNPSASAADQSFPDTSGFAVPECIPTKTPTQKKLGPSSSTPVTP 84
++TI I + + ++ +A TS AV T +K + STP TP
Sbjct: 324 QVTISIMTGSSPAETKASTAAWKIRNPLSRTSAPAVRIASATFRGLEKNPSTAPSTPATP 383
Query: 85 RSQ-SPSTPVSR----SRSPATPTCTSPT 108
R + +T V +PA PT SP+
Sbjct: 384 RVRAVLTTQVHHCVVVKPAPAVPTTPSPS 412
>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III
synthetase/uroporphyrin-III C-methyltransferase;
Reviewed.
Length = 656
Score = 29.7 bits (67), Expect = 1.4
Identities = 26/137 (18%), Positives = 44/137 (32%), Gaps = 21/137 (15%)
Query: 66 TKTPTQKKLGPSSSTPVTPRSQSPSTPVSRSRSPATPTCTSPTPDQEPSRSVKL-----V 120
T P + + + + P+ + P P T P P R V
Sbjct: 274 TAAPAPSR--MTDTNDSKSVTSQPAAAAAAPAPPPNPPATPPEPPARRGRGSAALWFVVV 331
Query: 121 KLSNVYQVGFI--------KELKVGMHQQSL----AESAVITR-LLSQVHKTSGEVIRKK 167
L+ VG + ++ QQ+ AE V T + VH+ + +
Sbjct: 332 VLACAAAVGGYALNRKVDRLDQELVQRQQANDAQTAELRVKTEQAQASVHQLDSQFAQLD 391
Query: 168 PRALTKSMSAQVVIETV 184
+ L + SAQ +E
Sbjct: 392 GK-LADAQSAQQALEQQ 407
>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional.
Length = 331
Score = 29.6 bits (67), Expect = 1.4
Identities = 10/75 (13%), Positives = 14/75 (18%)
Query: 35 VKTDVSSNPSASAADQSFPDTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPSTPVS 94
V D S+ + P V SQ+ +
Sbjct: 162 VPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAA 221
Query: 95 RSRSPATPTCTSPTP 109
A T P
Sbjct: 222 TPAPAAPATPDGAAP 236
>gnl|CDD|239677 cd03706, mtEFTU_III, Domain III of mitochondrial EF-TU (mtEF-TU).
mtEF-TU is highly conserved and is 55-60% identical to
bacterial EF-TU. The overall structure is similar to
that observed in the Escherichia coli and Thermus
aquaticus EF-TU. However, compared with that observed in
prokaryotic EF-TU the nucleotide-binding domain (domain
I) of EF-TUmt is in a different orientation relative to
the rest of the structure. Furthermore, domain III is
followed by a short 11-amino acid extension that forms
one helical turn. This extension seems to be specific to
the mitochondrial factors and has not been observed in
any of the prokaryotic factors.
Length = 93
Score = 28.1 bits (63), Expect = 1.5
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 8/44 (18%)
Query: 176 SAQVVIETVRPMCVELYRDVKELG-RFMLRVSGVTIAAGLITKV 218
+V + RPM V E G RF LR TI GL+T
Sbjct: 57 DTKVTLILRRPM-------VLEKGQRFTLRDGNRTIGTGLVTDT 93
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 614
Score = 29.4 bits (66), Expect = 1.6
Identities = 15/78 (19%), Positives = 22/78 (28%)
Query: 37 TDVSSNPSASAADQSFPDTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPSTPVSRS 96
++ S S + S P TP + P ++ PV P S +P
Sbjct: 392 PSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVNPPSTAPQAVRPAQ 451
Query: 97 RSPATPTCTSPTPDQEPS 114
S PS
Sbjct: 452 FKEEKKIPVSKVSSLGPS 469
>gnl|CDD|181555 PRK08780, PRK08780, DNA topoisomerase I; Provisional.
Length = 780
Score = 29.7 bits (67), Expect = 1.6
Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 27/127 (21%)
Query: 95 RSRSPATPTCTSPTPDQEPSRSVKL---------------VKLSNVYQVGFIKELK---V 136
R R+PA P TS T QE SR + V L + VG I ++ V
Sbjct: 256 RKRNPAPPFTTS-TLQQEASRKLGFTTRRTMQVAQKLYEGVDLGDEGSVGLITYMRTDSV 314
Query: 137 GMHQQSLAESAVITRLLSQVHKTSGEVIRKKPRAL-TKSMSAQVVIETVRPMCVELYRDV 195
+ Q +LAE I ++++ + T+ + +P TKS +AQ E VRP R
Sbjct: 315 NLSQDALAE---IRDVIARDYGTAS--LPDQPNTYKTKSKNAQEAHEAVRPTSA--LRTP 367
Query: 196 KELGRFM 202
++ RF+
Sbjct: 368 AQVARFL 374
>gnl|CDD|234383 TIGR03895, protease_PatA, cyanobactin maturation protease,
PatA/PatG family. This model describes a protease
domain associated with the maturation of various members
of the cyanobactin family of ribosomally produced,
heavily modified bioactive metabolites. Members include
the PatA protein and C-terminal domain of the PatG
protein of Prochloron didemni, TenA and a region of TenG
from Nostoc spongiaeforme var. tenue, etc.
Length = 602
Score = 29.3 bits (66), Expect = 1.8
Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 24 PKLTIIISDANVKTDVSSNPSASAADQSFPDTSGFAVPECIPTKTPTQKKLGPSSSTPVT 83
S V+ + S+ S ++ + + ++P P + T S V
Sbjct: 240 QDGVEEASGCGVQGTIESSTSVIPPGRA-AEPAPVSIPVAAPGEGATPAAAQIELSAGVL 298
Query: 84 PRSQSPSTPVSRSRSPATPTCTS 106
P + SP+TPV + + TP+
Sbjct: 299 PNAISPATPVRPASNGVTPSQAP 321
>gnl|CDD|151148 pfam10631, DUF2477, Protein of unknown function (DUF2477). This is
a family of proteins with no known function. The family
is rich in proline residues.
Length = 141
Score = 28.5 bits (63), Expect = 1.9
Identities = 28/99 (28%), Positives = 39/99 (39%), Gaps = 11/99 (11%)
Query: 24 PKLTIIISDANVKTDVSSN----PSASAADQSFPDTSGFAVPECI----PTKTPTQKKL- 74
P I I A+++ D+ PS S++ +S P G PE + PT+ P K
Sbjct: 11 PYAHISIPRAHLRPDLGQQLEAGPSCSSSSESQPLPVGSCTPEPLGLLQPTEAPGPKGTK 70
Query: 75 GPSSSTPVT--PRSQSPSTPVSRSRSPATPTCTSPTPDQ 111
G + P Q P P S + PA T P P
Sbjct: 71 GIKGAAPEHGQQAWQQPCNPYSSGQRPAGLTYAGPPPAG 109
>gnl|CDD|237184 PRK12736, PRK12736, elongation factor Tu; Reviewed.
Length = 394
Score = 29.1 bits (66), Expect = 2.2
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 7/46 (15%)
Query: 181 IETVRP-----MCVELYRDVK-ELG-RFMLRVSGVTIAAGLITKVI 219
E V P + VEL + E G +F +R G T+ AG +T+++
Sbjct: 348 TEMVMPGDNVTITVELIHPIAMEQGLKFAIREGGRTVGAGTVTEIL 393
>gnl|CDD|221651 pfam12583, TPPII_N, Tripeptidyl peptidase II N terminal. This
domain family is found in bacteria and eukaryotes, and
is approximately 190 amino acids in length. The family
is found in association with pfam00082. Tripeptidyl
peptidase II (TPPII) is a crucial component of the
proteolytic cascade acting downstream of the 26S
proteasome in the ubiquitin-proteasome pathway. It is an
amino peptidase belonging to the subtilase family
removing tripeptides from the free N terminus of
oligopeptides.
Length = 134
Score = 28.0 bits (62), Expect = 2.3
Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 10/65 (15%)
Query: 40 SSNPSASAADQSFPDTSGFAVPECIPTKTPTQKKL--GPSSSTPVTPRSQSPSTPVSRSR 97
+ N S++A T+ A T T+ K + + P S
Sbjct: 3 AKNGSSNANA-----TAAAAA---AATANATKPKAAATAGNPAAGDGVTTQTDGPAEGSG 54
Query: 98 SPATP 102
PA+P
Sbjct: 55 GPASP 59
>gnl|CDD|178673 PLN03127, PLN03127, Elongation factor Tu; Provisional.
Length = 447
Score = 29.0 bits (65), Expect = 2.4
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 197 ELG-RFMLRVSGVTIAAGLITKVI 219
E G RF LR G T+ AG+++KV+
Sbjct: 423 EPGQRFALREGGRTVGAGVVSKVL 446
>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional.
Length = 256
Score = 28.9 bits (65), Expect = 2.4
Identities = 11/50 (22%), Positives = 18/50 (36%)
Query: 64 IPTKTPTQKKLGPSSSTPVTPRSQSPSTPVSRSRSPATPTCTSPTPDQEP 113
+P T ++ P T P TP ++ +P P +P Q
Sbjct: 114 VPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPA 163
>gnl|CDD|234428 TIGR03979, His_Ser_Rich, His-Xaa-Ser repeat protein HxsA. Members
of this protein share two defining regions. One is a
histidine/serine-rich cluster, typically
H-R-S-H-S-S-H-R-S-H-S-S-H. Members are found always in
the context of a pair of radical SAM proteins, HxsB and
HxsC, and a fourth protein HxsD. The system is predicted
to perform peptide modifications, likely in the
His-Xaa-Ser region, to produce some uncharacterized
natural product.
Length = 186
Score = 28.3 bits (63), Expect = 2.5
Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 1/68 (1%)
Query: 40 SSNPSASAADQSFPDTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPSTPV-SRSRS 98
SS+ S S+ + G T T + PS S QS + R +S
Sbjct: 57 SSHRSHSSHSSHYSGAGGSYSVPSGDTSTYSYPVPSPSYSPSPGSSIQSLPSTTGVRPQS 116
Query: 99 PATPTCTS 106
A +
Sbjct: 117 SAENANSE 124
>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast
subunit 62; Provisional.
Length = 576
Score = 28.7 bits (64), Expect = 2.6
Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 2/83 (2%)
Query: 37 TDVSSNPSASAADQSFPDTSGFAVPECIPTKTPTQKKLGPSSSTP--VTPRSQSPSTPVS 94
D + P+ S S E + + L P + P S SP+ P
Sbjct: 401 VDAVAKPAEPDVVPSPGSASNVPEVEPAQVEAKKTRPLSPYARYEDLKPPTSPSPTAPTG 460
Query: 95 RSRSPATPTCTSPTPDQEPSRSV 117
S S ++ + PD P+ +
Sbjct: 461 VSPSVSSTSSVPAVPDTAPATAA 483
Score = 27.6 bits (61), Expect = 7.2
Identities = 22/78 (28%), Positives = 30/78 (38%), Gaps = 4/78 (5%)
Query: 43 PSASAADQSFPDTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPSTPVSRSRSPATP 102
+ AAD P + PE P ++ P V PR SP T + P +P
Sbjct: 331 KESDAADGPKPVPTKPVTPE--APSPPIEE--EPPQPKAVVPRPLSPYTAYEDLKPPTSP 386
Query: 103 TCTSPTPDQEPSRSVKLV 120
T P+ S+SV V
Sbjct: 387 IPTPPSSSPASSKSVDAV 404
>gnl|CDD|219897 pfam08549, SWI-SNF_Ssr4, Fungal domain of unknown function
(DUF1750). This is a fungal domain of unknown function.
Length = 669
Score = 28.8 bits (64), Expect = 2.7
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 86 SQSPSTPVSRSRSPATPTCTSPTPDQEPS 114
Q+ STP + ATPT T Q P+
Sbjct: 516 FQTASTPAPNASGQATPTATGVASPQPPA 544
>gnl|CDD|129576 TIGR00485, EF-Tu, translation elongation factor TU. This model
models orthologs of translation elongation factor EF-Tu
in bacteria, mitochondria, and chloroplasts, one of
several GTP-binding translation factors found by the
more general pfam model GTP_EFTU. The eukaryotic
conterpart, eukaryotic translation elongation factor 1
(eEF-1 alpha), is excluded from this model. EF-Tu is one
of the most abundant proteins in bacteria, as well as
one of the most highly conserved, and in a number of
species the gene is duplicated with identical function.
When bound to GTP, EF-Tu can form a complex with any
(correctly) aminoacylated tRNA except those for
initiation and for selenocysteine, in which case EF-Tu
is replaced by other factors. Transfer RNA is carried to
the ribosome in these complexes for protein translation
[Protein synthesis, Translation factors].
Length = 394
Score = 28.6 bits (64), Expect = 2.8
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 7/46 (15%)
Query: 181 IETVRP-----MCVELYRDVK-ELG-RFMLRVSGVTIAAGLITKVI 219
+E V P M VEL + E G RF +R G T+ AG+++K+I
Sbjct: 348 VEMVMPGDNVKMTVELISPIALEQGMRFAIREGGRTVGAGVVSKII 393
>gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional.
Length = 401
Score = 28.4 bits (63), Expect = 3.0
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 53 PDTSGFAVPECIPTKTPTQKKLGPSSS-TPVTPRSQSPSTPVSRSRSPATPTCTSPTPDQ 111
P G A C P + +LGP+ P TPR +P T S +P T TSP
Sbjct: 176 PLGEGSADGSCDPALPLSAPRLGPADVFVPATPRP-TPRTTASPETTPTPSTTTSPPSTT 234
Query: 112 EPSRS 116
P+ S
Sbjct: 235 IPAPS 239
>gnl|CDD|240592 cd12929, GUCT, RNA-binding GUCT domain found in the RNA helicase
II/Gu protein family. This family includes vertebrate
RNA helicase II/Gualpha (RH-II/Gualpha) and RNA helicase
II/Gubeta (RH-II/Gubeta), both of which consist of a
DEAD box helicase domain (DEAD), a helicase conserved
C-terminal domain, and a Gu C-terminal (GUCT) domain.
They localize to nucleoli, suggesting roles in ribosomal
RNA production, but RH-II/Gubeta also localizes to
nuclear speckles containing the splicing factor SC35,
suggesting its possible involvement in pre-mRNA
splicing. In contrast to RH-II/Gualpha, RH-II/Gubeta has
RNA-unwinding activity, but no RNA-folding activity. The
family also contains plant DEAD-box ATP-dependent RNA
helicase 7 (RH7 or PRH75), Thermus thermophilus heat
resistant RNA-dependent ATPase (Hera) and similar
proteins. RH7 is a new nucleus-localized member of the
DEAD-box protein family from higher plants. It displays
a weak ATPase activity which is barely stimulated by RNA
ligands. RH7 contains an N-terminal KDES domain rich in
lysine, glutamic acid, aspartic acid, and serine
residues, seven highly conserved helicase motifs in the
central region, a GUCT domain, and a C-terminal GYR
domain harboring a large number of glycine residues
interrupted by either arginines or tyrosines. Thermus
thermophilus Hera is a DEAD box helicase that binds
fragments of 23S rRNA and RNase P RNA via its C-terminal
domain. It contains a helicase core that harbors two
RecA-like domains termed RecA_N and RecA_C, a
dimerization domain (DD), and a C-terminal RNA-binding
domain (RBD) that reveals a compact, RRM-like fold and
shows sequence similarity with the typical GUCT domain
found in the RNA helicase II/Gu protein family.
Length = 72
Score = 26.5 bits (58), Expect = 3.2
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 101 TPTCTSPTPDQEPSRSVKLVK---LSNVYQVGFIKELKVGM 138
T P Q SR V L+K LSNV +VG + EL+
Sbjct: 4 TYKLEGPRLIQSLSRLVALLKRQLLSNVSEVGKVAELEGNG 44
>gnl|CDD|236425 PRK09240, thiH, thiamine biosynthesis protein ThiH; Reviewed.
Length = 371
Score = 28.2 bits (64), Expect = 3.4
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Query: 158 KTSGEVIRKKPRALTKSMSAQVVIETVRPMCVELYRDVKELGRFMLRVSGVTI 210
K + IR+ + S V IE V+P+ E Y ++ ELG + GVT+
Sbjct: 134 KVGVDYIRRALPIAREYFS-SVSIE-VQPLSEEEYAELVELG-----LDGVTV 179
>gnl|CDD|239678 cd03707, EFTU_III, Domain III of elongation factor (EF) Tu. Ef-Tu
consists of three structural domains, designated I, II
and III. Domain III adopts a beta barrel structure.
Domain III is involved in binding to both charged tRNA
and binding to elongation factor Ts (EF-Ts). EF-Ts is
the guanine-nucleotide-exchange factor for EF-Tu. EF-Tu
and EF-G participate in the elongation phase during
protein biosynthesis on the ribosome. Their functional
cycles depend on GTP binding and its hydrolysis. The
EF-Tu complexed with GTP and aminoacyl-tRNA delivers
tRNA to the ribosome, whereas EF-G stimulates
translocation, a process in which tRNA and mRNA
movements occur in the ribosome. Crystallographic
studies revealed structural similarities ("molecular
mimicry") between tertiary structures of EF-G and the
EF-Tu-aminoacyl-tRNA ternary complex. Domains III, IV,
and V of EF-G mimic the tRNA structure in the EF-Tu
ternary complex; domains III, IV and V can be related to
the acceptor stem, anticodon helix and T stem of tRNA
respectively.
Length = 90
Score = 26.7 bits (60), Expect = 3.5
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 187 MCVELYRDV--KELGRFMLRVSGVTIAAGLI 215
M VEL + ++ RF +R G T+ AG+I
Sbjct: 60 MTVELIHPIALEKGLRFAIREGGRTVGAGVI 90
>gnl|CDD|183854 PRK13042, PRK13042, superantigen-like protein; Reviewed.
Length = 291
Score = 28.1 bits (62), Expect = 3.7
Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 44 SASAADQSFPDTSGFAVPECIPTKT-PTQKKLGPSSSTPVTPRSQSPSTPVSRSRSPAT- 101
+ AA+ + P ++ P+ P T + P+++TP + + ++P + + +T
Sbjct: 24 TTQAANATTPSSTKVEAPQSTPPSTKVEAPQSKPNATTPPSTKVEAPQQTPNATTPSSTK 83
Query: 102 -PTCTSPTPDQEPS 114
T SPT Q P+
Sbjct: 84 VETPQSPTTKQVPT 97
>gnl|CDD|236304 PRK08581, PRK08581, N-acetylmuramoyl-L-alanine amidase; Validated.
Length = 619
Score = 28.2 bits (63), Expect = 3.8
Identities = 15/76 (19%), Positives = 25/76 (32%)
Query: 31 SDANVKTDVSSNPSASAADQSFPDTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPS 90
+ K D + N A +++ + P TS PT+ S T S +
Sbjct: 162 DTQSSKQDKADNQKAPSSNNTKPSTSNKQPNSPKPTQPNQSNSQPASDDTANQKSSSKDN 221
Query: 91 TPVSRSRSPATPTCTS 106
+S S + S
Sbjct: 222 QSMSDSALDSILDQYS 237
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like. Vta1 (VPS20-associated protein 1) is
a positive regulator of Vps4. Vps4 is an ATPase that is
required in the multivesicular body (MVB) sorting
pathway to dissociate the endosomal sorting complex
required for transport (ESCRT). Vta1 promotes correct
assembly of Vps4 and stimulates its ATPase activity
through its conserved Vta1/SBP1/LIP5 region.
Length = 315
Score = 28.1 bits (63), Expect = 4.1
Identities = 15/73 (20%), Positives = 20/73 (27%)
Query: 40 SSNPSASAADQSFPDTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPSTPVSRSRSP 99
S+ S A SF + PE +P P S + P S S
Sbjct: 207 PSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASA 266
Query: 100 ATPTCTSPTPDQE 112
T D +
Sbjct: 267 TPAPIGGITLDDD 279
Score = 27.7 bits (62), Expect = 5.7
Identities = 13/90 (14%), Positives = 24/90 (26%), Gaps = 11/90 (12%)
Query: 31 SDANVKTDVSSNPSASAADQSFPDTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPS 90
+ +S ++ P P+ P + +S +P
Sbjct: 173 PGEDADPASASPSDPPSSSPGVPSFPSPPE-------DPSSPSDSSLPPAPSSFQSDTPP 225
Query: 91 TPVSRSRSPATPTCTSPTPDQEPSRSVKLV 120
+P+ P P P P V+ V
Sbjct: 226 PSPESPTNPSPP----PGPAAPPPPPVQQV 251
>gnl|CDD|178806 PRK00030, minC, septum formation inhibitor; Provisional.
Length = 292
Score = 28.1 bits (62), Expect = 4.3
Identities = 16/83 (19%), Positives = 26/83 (31%), Gaps = 7/83 (8%)
Query: 34 NVKTDVSSNPSASAADQSFPDTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPSTPV 93
+V T V S P A+A + Q P+ + P + T
Sbjct: 118 DVATPVPSVPEATAEAAAKAGPQD-------DEADGEQADEAPAHNPESVPTRAARETTE 170
Query: 94 SRSRSPATPTCTSPTPDQEPSRS 116
+ + P +S +P RS
Sbjct: 171 ANRPTATPPQSSSALVITKPLRS 193
>gnl|CDD|227952 COG5665, NOT5, CCR4-NOT transcriptional regulation complex, NOT5
subunit [Transcription].
Length = 548
Score = 28.1 bits (62), Expect = 4.4
Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 5/82 (6%)
Query: 40 SSNPSASAADQSFPDTSGFAVPECIPTKTPTQKKLGPS--SSTPVTPRSQSPSTPVSRSR 97
+ P S E P K Q+ + S ++TP+ P +S S +S +
Sbjct: 207 NEAPKEGNNQTSLSSIRSSKKQERSPKKKAPQRDVSISDRATTPIAPGVESASQSISST- 265
Query: 98 SPATPTCTSPTPDQEPSRSVKL 119
TP T S+K
Sbjct: 266 --PTPVSTDTPLHTVKDDSIKF 285
>gnl|CDD|216257 pfam01034, Syndecan, Syndecan domain. Syndecans are transmembrane
heparin sulfate proteoglycans which are implicated in
the binding of extracellular matrix components and
growth factors.
Length = 207
Score = 27.8 bits (62), Expect = 4.7
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 5/69 (7%)
Query: 53 PDTSGFAVPECIPTK-----TPTQKKLGPSSSTPVTPRSQSPSTPVSRSRSPATPTCTSP 107
P T+ P+ T T +S V+ + ++P AT T ++
Sbjct: 70 PVTTSATPPKLTTTSSSPSNDTTTASTSTKTSPTVSTTVTTTTSPSETDTEEATTTVSTE 129
Query: 108 TPDQEPSRS 116
TP + S +
Sbjct: 130 TPTEGGSSA 138
>gnl|CDD|215592 PLN03126, PLN03126, Elongation factor Tu; Provisional.
Length = 478
Score = 28.0 bits (62), Expect = 4.8
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
Query: 178 QVVIETVRPMCVELYRDVKELGRFMLRVSGVTIAAGLITKVI 219
++V+E + P+ E + RF +R G T+ AG+I +I
Sbjct: 442 KMVVELIVPVACE------QGMRFAIREGGKTVGAGVIQSII 477
>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein
TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ
homolog and probable assembly protein of the Mycoplasma
terminal organelle. The terminal organelle is involved
in both cytadherence and gliding motility [Cellular
processes, Chemotaxis and motility].
Length = 871
Score = 28.2 bits (62), Expect = 5.0
Identities = 13/90 (14%), Positives = 27/90 (30%), Gaps = 2/90 (2%)
Query: 30 ISDANVKTDVSSNPSASAADQSFPDT-SGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQS 88
S+ + + S+ + + P PE + +T + K P
Sbjct: 245 DSEDDYVIPDAEIISSPTLEVTAPKEVEQPLQPEPVDEETVAETKAEEEP-QPTQTVETK 303
Query: 89 PSTPVSRSRSPATPTCTSPTPDQEPSRSVK 118
P++ + P PT +P+
Sbjct: 304 PTSAPESTVEENLPEINQPTQAVQPTSETI 333
>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 504
Score = 27.9 bits (62), Expect = 5.5
Identities = 10/75 (13%), Positives = 18/75 (24%)
Query: 43 PSASAADQSFPDTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPSTPVSRSRSPATP 102
PS A + P + + + + + L + + T R R P P
Sbjct: 346 PSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAPTAAATAAGAPLPDFDPRPRGPPAP 405
Query: 103 TCTSPTPDQEPSRSV 117
Sbjct: 406 EPARSAEAPPLVAPA 420
>gnl|CDD|237873 PRK14969, PRK14969, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 527
Score = 27.8 bits (62), Expect = 5.5
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 76 PSSSTPVTPRSQSPSTPVSRSRS-----PATPTCTSPTPDQEPS 114
PS R+ V+R+R+ PA P +P+ Q +
Sbjct: 360 PSEQDSGAGRAPGAVPGVNRTRAVPTAAPAAPAAATPSDRQSFN 403
>gnl|CDD|219916 pfam08580, KAR9, Yeast cortical protein KAR9. The KAR9 protein in
Saccharomyces cerevisiae is a cytoskeletal protein
required for karyogamy, correct positioning of the
mitotic spindle and for orientation of cytoplasmic
microtubules. KAR9 localises at the shmoo tip in mating
cells and at the tip of the growing bud in anaphase.
Length = 626
Score = 27.9 bits (62), Expect = 5.6
Identities = 14/75 (18%), Positives = 21/75 (28%), Gaps = 1/75 (1%)
Query: 40 SSNPSASAADQSFPDTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPSTPVSRSRSP 99
+ + S I + + L P+ P P +T RS S
Sbjct: 544 PPPYPTLVSRKGAAGLSFNRSVSDIEGERIGRYNLLPTR-IPALPFKAESTTSSRRSSSL 602
Query: 100 ATPTCTSPTPDQEPS 114
+PT P P
Sbjct: 603 PSPTGVIGFPGSVPR 617
Score = 27.5 bits (61), Expect = 6.6
Identities = 25/129 (19%), Positives = 38/129 (29%), Gaps = 7/129 (5%)
Query: 22 IIPKLTIIISDANVKTDVSSNPSASA-ADQSFPDTSGFAVPECIPT--KTPTQKKLGPS- 77
I P L I + V + S + D E P KL +
Sbjct: 443 IKPTLASIPDEKPSNISVFEDSETSPNSSTLLRDPPPKKCGEESGHLPNNPFFNKLKLTL 502
Query: 78 SSTPVTPRSQSPSTPVSRSRSPATPTCTSPTPDQEPSRSVKLVKLSNVYQVGFIKELKVG 137
SS P QS T + SR + S + S S +V + K
Sbjct: 503 SSIPPLSPRQSIITLPTPSRPASR---ISSLSLRLGSYSGSIVSPPPYPTLVSRKGAAGL 559
Query: 138 MHQQSLAES 146
+S+++
Sbjct: 560 SFNRSVSDI 568
>gnl|CDD|221577 pfam12440, MAGE_N, Melanoma associated antigen family N terminal.
This domain family is found in eukaryotes, and is
typically between 82 and 96 amino acids in length. The
family is found in association with pfam01454. This
family is the N terminal of various melanoma associated
antigens. These are tumour rejection antigens which are
expressed on HLA-A1 of tumour cells and they are
recognised by cytotoxic T lymphocytes (CTLs).
Length = 96
Score = 26.4 bits (58), Expect = 5.8
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
Query: 68 TPTQKKLGPSSSTPV-------TPRSQSPSTPVSRSRSPATPTCTSPTPDQEPS 114
+++ PSSS+P+ P + SPS P S + ++ T + T +
Sbjct: 29 PAAEEEESPSSSSPLIPGTPESVPAAGSPSPPQSPQGASSSSTAVAATSWSQSD 82
>gnl|CDD|165564 PHA03309, PHA03309, transcriptional regulator ICP4; Provisional.
Length = 2033
Score = 27.9 bits (61), Expect = 6.3
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 75 GPSSSTPVTPRSQSPSTPVSRSRSPATPTCT-SPTP 109
G SSS+ + S S S+P SR ATP+ + SP+P
Sbjct: 1814 GRSSSSSSSSSSSSSSSPSSRPSRSATPSLSPSPSP 1849
>gnl|CDD|227315 COG4982, COG4982, 3-oxoacyl-[acyl-carrier protein].
Length = 866
Score = 27.5 bits (61), Expect = 6.5
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 64 IPTKTPTQKKLGPSSSTPVTP--RSQSPSTPVSRSRSPATPTCTSPTPDQEP 113
P T +++ +TP P + +P+ + A P P PD EP
Sbjct: 1 DPFATDAKEEPAKEEATPPAPAASAPAPAAAAPAPVAAAAPAAAGPRPDDEP 52
>gnl|CDD|215187 PLN02328, PLN02328, lysine-specific histone demethylase 1 homolog.
Length = 808
Score = 27.6 bits (61), Expect = 7.5
Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 15/97 (15%)
Query: 28 IIISDANVKTDVSSNPSASAAD-----QSFPDTSGFAVPECIPTKTPTQKKLGPSSSTPV 82
++ ++ +TD+S +PS S + Q+ P+T P L P+ T +
Sbjct: 18 VVSEASSPETDLSLSPSQSEQNIENDGQNSPETQ-------SPLTELQPSPLPPN--TTL 68
Query: 83 -TPRSQSPSTPVSRSRSPATPTCTSPTPDQEPSRSVK 118
P S S S + P P T P P + R K
Sbjct: 69 DAPVSDSQGDESSSEQQPQNPNSTEPAPPPKKRRRRK 105
>gnl|CDD|151482 pfam11035, SnAPC_2_like, Small nuclear RNA activating complex
subunit 2-like. This family of proteins is SnAPC
subunit 2-like. SnAPC allows the transcription of human
small nuclear RNA genes to occur by recognition of the
proximal sequence element.
Length = 344
Score = 27.3 bits (60), Expect = 7.6
Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 15/91 (16%)
Query: 71 QKKLGP--SSSTPVTP--RSQSPSTPVSRSRSPATPTCTSPTPDQEPSRSVKLVK----L 122
Q+ P SS P+ P S S P + +P P+ + E +V K L
Sbjct: 160 QEDPAPEGSSPAPMAPADPKASGSNPETPGPAPEAPSESLAGSSTERDFAVDFEKIYKYL 219
Query: 123 SNVYQVGFIKELKVGMHQQSLAESAVITRLL 153
S+V + G EL S AESAV+ LL
Sbjct: 220 SSVSRGGHGPEL-------SAAESAVVLDLL 243
>gnl|CDD|171440 PRK12365, PRK12365, ribonucleotide-diphosphate reductase subunit
alpha; Provisional.
Length = 1046
Score = 27.6 bits (61), Expect = 8.1
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 13/73 (17%)
Query: 121 KLSNVYQVGFIKELKVGMHQQSLAESAVITRLLSQVHKTSGEVIRK--KPRAL-TKSMSA 177
KLSN+Y + K LK + +S A ++ V K+ ++ ++ +PR + KS S
Sbjct: 972 KLSNMYLTAWKKGLKTTYYLRSSAATS--------VEKSFVDINKRGIQPRWMKNKSAST 1023
Query: 178 QVVIETVR--PMC 188
+V+E + P+C
Sbjct: 1024 SIVVERAKKTPVC 1036
>gnl|CDD|223031 PHA03273, PHA03273, envelope glycoprotein C; Provisional.
Length = 486
Score = 27.3 bits (60), Expect = 8.7
Identities = 14/84 (16%), Positives = 31/84 (36%), Gaps = 2/84 (2%)
Query: 55 TSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQ--SPSTPVSRSRSPATPTCTSPTPDQE 112
SG + I + ++ + +TP S SP + + + A T ++ Q
Sbjct: 25 ASGASTSSSIENSDNSTAEMQSTPATPTHTTSNLTSPFGTGTDNSTNANGTESTTQASQP 84
Query: 113 PSRSVKLVKLSNVYQVGFIKELKV 136
S + ++ V + K + +
Sbjct: 85 HSHETTITCTKSLISVPYYKSVDM 108
>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106). This
family of proteins are found in large numbers in the
Trichomonas vaginalis proteome. The function of this
protein is unknown.
Length = 422
Score = 26.9 bits (59), Expect = 9.0
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 65 PTKTPTQKKLGPSSSTPVTPRSQSPSTPVSRSRSPATPTCTSPTPDQEPSRS 116
PT+ PT + P+ V +Q P + T P Q+P ++
Sbjct: 203 PTQQPTVQN--PAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQT 252
>gnl|CDD|225689 COG3147, DedD, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 226
Score = 26.8 bits (59), Expect = 9.1
Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 65 PTKTPTQKKLGPSSSTP--VTPRSQSPSTPVSRSRSPATPTCTSPTPDQEPS 114
+ P P STP V +Q+P + PA PTP EP
Sbjct: 87 ASVDPQPVAQPPVESTPAGVPVAAQTPKPVKPPKQPPAGAVPAKPTPKPEPK 138
>gnl|CDD|216194 pfam00922, Phosphoprotein, Vesiculovirus phosphoprotein.
Length = 283
Score = 26.8 bits (59), Expect = 9.2
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 77 SSSTPVTPRSQSPSTPVSRSRSPATPTCTSPT 108
S P + S S S PVS RSP TP+ S +
Sbjct: 176 SEHIPSSNTSPSTSEPVSTLRSP-TPSSKSSS 206
>gnl|CDD|165468 PHA03201, PHA03201, uracil DNA glycosylase; Provisional.
Length = 318
Score = 27.2 bits (60), Expect = 9.2
Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 4/55 (7%)
Query: 63 CIPTKTPTQKKLGPSSSTPVTPRSQS----PSTPVSRSRSPATPTCTSPTPDQEP 113
+ +P ++ P + P +P + PS P + P P + P
Sbjct: 5 RSRSPSPPRRPSPPRPTPPRSPDASPEETPPSPPGPGAEPPPGRAAGPAAPRRRP 59
>gnl|CDD|234596 PRK00049, PRK00049, elongation factor Tu; Reviewed.
Length = 396
Score = 27.1 bits (61), Expect = 9.3
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 200 RFMLRVSGVTIAAGLITKVI 219
RF +R G T+ AG++TK+I
Sbjct: 376 RFAIREGGRTVGAGVVTKII 395
>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional.
Length = 141
Score = 26.3 bits (58), Expect = 9.6
Identities = 14/46 (30%), Positives = 18/46 (39%)
Query: 41 SNPSASAADQSFPDTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRS 86
+ S + A + P TS AVP P P S P PR+
Sbjct: 95 TAQSPAPAVPTPPPTSTPAVPPAPAAAVPAPAAAPPPSDPPQPPRA 140
>gnl|CDD|215182 PLN02321, PLN02321, 2-isopropylmalate synthase.
Length = 632
Score = 27.2 bits (60), Expect = 9.6
Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 9/83 (10%)
Query: 39 VSSNPSASAADQSFPDTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPSTPVSRS-- 96
+ +P+ S+A + P S A P T + + P + + SR+
Sbjct: 1 ILRSPNLSSATAASPAKSLSAFT---PAPTRSSASSARFPAFLARPAAARSPSLASRASS 57
Query: 97 ----RSPATPTCTSPTPDQEPSR 115
P P+ P+R
Sbjct: 58 ALAASPSRPQVARRPRPEYIPNR 80
>gnl|CDD|177871 PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E2 component.
Length = 463
Score = 27.0 bits (59), Expect = 10.0
Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 4/79 (5%)
Query: 44 SASAADQSFPDTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPSTPVSRSRSPATPT 103
S AA Q P + P+ K+ S PV + ++PS+P +S P
Sbjct: 168 SEDAASQVTPSQKIPETTDPKPSPPAEDKQKPKVESAPVAEKPKAPSSPPPPKQSAKEPQ 227
Query: 104 CTSPTPDQEPSRSVKLVKL 122
P +E R V + +L
Sbjct: 228 ----LPPKERERRVPMTRL 242
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.128 0.367
Gapped
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,123,809
Number of extensions: 973816
Number of successful extensions: 1574
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1465
Number of HSP's successfully gapped: 184
Length of query: 232
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 138
Effective length of database: 6,768,326
Effective search space: 934028988
Effective search space used: 934028988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.2 bits)