RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15204
(232 letters)
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase,
alpha/beta structure, protein biosynthesis, translation;
HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Length = 435
Score = 102 bits (257), Expect = 1e-25
Identities = 24/82 (29%), Positives = 45/82 (54%)
Query: 138 MHQQSLAESAVITRLLSQVHKTSGEVIRKKPRALTKSMSAQVVIETVRPMCVELYRDVKE 197
+H + + + ++ L+S++ +G+ K P+ L + A V + ++P+CVE Y +
Sbjct: 347 LHVHTASVACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLCVEKYNEFPP 406
Query: 198 LGRFMLRVSGVTIAAGLITKVI 219
LGRF +R G T+ G+I V
Sbjct: 407 LGRFAMRDMGKTVGVGIIVDVK 428
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A;
translation termination, peptide release, PTC, P
biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo
sapiens}
Length = 204
Score = 97.6 bits (244), Expect = 2e-25
Identities = 27/82 (32%), Positives = 44/82 (53%)
Query: 138 MHQQSLAESAVITRLLSQVHKTSGEVIRKKPRALTKSMSAQVVIETVRPMCVELYRDVKE 197
+H + E IT L+ V K SGE + +PR + + + T +C+E ++D +
Sbjct: 119 LHIHTCIEEVEITALICLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQ 178
Query: 198 LGRFMLRVSGVTIAAGLITKVI 219
+GRF LR G TIA G + K++
Sbjct: 179 MGRFTLRDEGKTIAIGKVLKLV 200
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit;
translation termination, peptide release, GTPase,
translatio; 2.35A {Schizosaccharomyces pombe} SCOP:
b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Length = 467
Score = 102 bits (255), Expect = 3e-25
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 138 MHQQSLAESAVITRLLSQVHKTSGEVIRKKPRALTKSMSAQVVIETVRPMCVELYRDVKE 197
MH + E +LL ++ KT +K P TK M +ET P+C+E + D +
Sbjct: 386 MHIHTAVEEVSFAKLLHKLDKT-NRKSKKPPMFATKGMKIIAELETQTPVCMERFEDYQY 444
Query: 198 LGRFMLRVSGVTIAAGLITKVI 219
+GRF LR G T+A G + K++
Sbjct: 445 MGRFTLRDQGTTVAVGKVVKIL 466
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain,
beta-barrel, translational GTPase, D structural
genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Length = 483
Score = 94.2 bits (235), Expect = 1e-22
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 138 MHQQSLAESAVITRLLSQVHKTSGEVIRKKPRALTKSMSAQV---VIETVRPMCVELYRD 194
+ + A I RL+S + K + +KK R L A V +IE R + + +
Sbjct: 393 LFIGVKEQPARIKRLISFIDKGNT-ASKKKIRHLGSKQRAFVEIELIEVKRWIPLLTAHE 451
Query: 195 VKELGRFMLRVSGVTIAAGLITKVI 219
LGR +LR G TIAAG I+++
Sbjct: 452 NDRLGRVVLRKDGRTIAAGKISEIT 476
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay,
ribosomal protein,hydrolase; 9.50A {Saccharomyces
cerevisiae}
Length = 611
Score = 94.0 bits (234), Expect = 2e-22
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 138 MHQQSLAESAVITRLLSQVHKTSGEVIRKKPRALTKSMSAQV---VIETVRPMCVELYRD 194
+ + A I RL+S + K + +KK R L A V +IE R + + +
Sbjct: 527 LFIGVKEQPARIKRLISFIDKGNT-ASKKKIRHLGSKQRAFVEIELIEVKRWIPLLTAHE 585
Query: 195 VKELGRFMLRVSGVTIAAGLITKVI 219
LGR +LR G TIAAG I+++
Sbjct: 586 NDRLGRVVLRKDGRTIAAGKISEIT 610
>1f60_A Elongation factor EEF1A; protein-protein complex, translation;
1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1
c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Length = 458
Score = 92.4 bits (230), Expect = 6e-22
Identities = 23/81 (28%), Positives = 38/81 (46%)
Query: 138 MHQQSLAESAVITRLLSQVHKTSGEVIRKKPRALTKSMSAQVVIETVRPMCVELYRDVKE 197
+ + + LL + + SG+ + P+ L +A V +PMCVE + +
Sbjct: 359 LDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGDAALVKFVPSKPMCVEAFSEYPP 418
Query: 198 LGRFMLRVSGVTIAAGLITKV 218
LGRF +R T+A G+I V
Sbjct: 419 LGRFAVRDMRQTVAVGVIKSV 439
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein
complex, translation regulation; 2.74A
{Schizosaccharomyces pombe}
Length = 592
Score = 77.5 bits (191), Expect = 1e-16
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 149 ITRLLSQVHKTSGEVIRKKPRALTKSMSAQVVIETVRPM-CVELYRDVKELGRFMLRVSG 207
+ R ++ V V K+ R + A V I + + + L + LGRF+LR SG
Sbjct: 521 LGRTVTSVSLKIVTVNNKRSRHIASRKRALVRISFLDGLFPLCLAEECPALGRFILRRSG 580
Query: 208 VTIAAGLITKV 218
T+AAG++ ++
Sbjct: 581 DTVAAGIVKEL 591
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase;
beta barrel, switch domain, heterodimer, pyrophosphate,
G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV}
SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Length = 434
Score = 46.9 bits (112), Expect = 2e-06
Identities = 15/73 (20%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 146 SAVITRLLSQVHKTSGEVIRKKPRALTKSMSAQVVIETVRPMCVELYRDVKELGRFML-- 203
I + +V + E +L + +V + P+ ++ Y + G F++
Sbjct: 363 PGSIASITHRVDVNTLE--EGPASSLQLNEIGRVKVSLDAPIALDGYSSNRTTGAFIVID 420
Query: 204 RVSGVTIAAGLIT 216
R++ T+AAG+I
Sbjct: 421 RLTNGTVAAGMII 433
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.2 bits (96), Expect = 2e-04
Identities = 42/247 (17%), Positives = 80/247 (32%), Gaps = 90/247 (36%)
Query: 41 SNPSASA----ADQSFPDTSGFAVPECIPTKTPTQKKL--GPSSSTPV-----------T 83
++ +A AD F DT GF++ + I P + G +
Sbjct: 1638 TSKAAQDVWNRADNHFKDTYGFSILD-IVINNPVNLTIHFGGEKGKRIRENYSAMIFETI 1696
Query: 84 PRSQSPSTPVSRSRSPATPTCTSPTPD---------QEPSRSVKLVKLSNVYQV----GF 130
+ + + + + + + T + Q P ++ L++ + ++ G
Sbjct: 1697 VDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQ-P--ALTLMEKA-AFEDLKSKGL 1752
Query: 131 IKELKV--GMHQQSLAE-SAVITRLLSQVHKTSGEVIRKKPRALTKSMSAQVVIETVRPM 187
I G H SL E +A L+ +L MS + ++E V
Sbjct: 1753 IPADATFAG-H--SLGEYAA-----LA---------------SLADVMSIESLVEVVF-- 1787
Query: 188 CVELYR--------DVKELGRF---MLRVSGVTIAAGL-------ITKVIFDQCGST--- 226
YR ELGR M+ ++ +AA + + + + G
Sbjct: 1788 ----YRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEI 1843
Query: 227 -NLYNIS 232
N YN+
Sbjct: 1844 VN-YNVE 1849
Score = 37.0 bits (85), Expect = 0.005
Identities = 50/289 (17%), Positives = 84/289 (29%), Gaps = 109/289 (37%)
Query: 13 SWSSWIC--------LFII--------PKLTIIISDANVKTDVSSNPSASAADQSFPDTS 56
SW S+ LF I P ++ S + S +
Sbjct: 288 SWESFFVSVRKAITVLFFIGVRCYEAYPNTSL---------------PPSILEDSLENNE 332
Query: 57 GFAVP------------ECIPTKT----PTQKKL------GPSS---STPVTPRS-QSPS 90
G P + KT P K++ G + S P P+S +
Sbjct: 333 GVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGP--PQSLYGLN 390
Query: 91 TPVSRSRSPATPTCTSPTPDQEPSR---SVKLVKLSNVYQVGFIKELKVGM--HQQSL-- 143
+ ++++P DQ SR S + +K SN + L V H L
Sbjct: 391 LTLRKAKAP-------SGLDQ--SRIPFSERKLKFSNRF-------LPVASPFHSHLLVP 434
Query: 144 AESAVITRLLSQ------------VHKT-SGEVIRKKPRALTKSMSAQVVIETVR-PMCV 189
A + L+ V+ T G +R ++++ + ++ V+
Sbjct: 435 ASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTT 494
Query: 190 ELYR---------DVKELGRFMLRV---SGV-TIAAGLITKVIFDQCGS 225
+ LG R +GV I AG + D G
Sbjct: 495 QFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGF 543
Score = 32.7 bits (74), Expect = 0.10
Identities = 36/190 (18%), Positives = 66/190 (34%), Gaps = 63/190 (33%)
Query: 78 SSTPVTPRSQS--PSTPVSRS-------------RSPATPTCTSPTPDQEPSRSVKLV-K 121
S+ P+T S V + + PT D EP+ +LV K
Sbjct: 5 STRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPT-EGFAADDEPTTPAELVGK 63
Query: 122 LSNVYQVGFIKELKVGMHQQSLAESAVITRLLSQ----------VHKTSGEVIRKKPRAL 171
+G++ L + V+ L++ +H + +++++ L
Sbjct: 64 F-----LGYVSSLVEPSKVGQFDQ--VLNLCLTEFENCYLEGNDIHALAAKLLQENDTTL 116
Query: 172 TKSMS-------AQVVIETVRPMCVE----LYRDVKELGRFMLRVSGVTIAAGLITKVIF 220
K+ A+++ + RP + L+R V E G A L+ IF
Sbjct: 117 VKTKELIKNYITARIMAK--RPFDKKSNSALFRAVGE-GN-----------AQLVA--IF 160
Query: 221 D-QCGSTNLY 229
Q G+T+ Y
Sbjct: 161 GGQ-GNTDDY 169
Score = 29.6 bits (66), Expect = 1.2
Identities = 26/159 (16%), Positives = 46/159 (28%), Gaps = 43/159 (27%)
Query: 106 SPTPDQEPSRSVKL-VKLSNVYQVG-FIKELKV-GMHQQSLAES---------AVITRLL 153
S TPD++ S+ + L V Q+ ++ K+ G L ++T +
Sbjct: 223 SNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA 282
Query: 154 SQVHKTSGEVIRKKPRALTKS----MSAQVVIETVRPMCVE--LYRDVKELGR----FML 203
+ +A+T + E + + D E ML
Sbjct: 283 IAETDSWESFFVSVRKAITVLFFIGVRCY---EAYPNTSLPPSILEDSLENNEGVPSPML 339
Query: 204 RVSGVTIAAGLITKVIFDQCGSTN------------LYN 230
+S +T + D TN L N
Sbjct: 340 SISNLTQEQ------VQDYVNKTNSHLPAGKQVEISLVN 372
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA
polymerase, translation, transferase-RNA complex; HET:
GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A*
3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G*
1efu_B
Length = 1289
Score = 34.1 bits (78), Expect = 0.041
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 7/46 (15%)
Query: 181 IETVRP-----MCVELYRDVK-ELG-RFMLRVSGVTIAAGLITKVI 219
+E V P M V L + + G RF +R G T+ AG++ KV+
Sbjct: 632 VEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 677
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding
protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Length = 397
Score = 33.3 bits (77), Expect = 0.047
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
Query: 177 AQVVIETVRPMCVELYRDVKELGRFMLRVSGVTIAAGLITKVI 219
++ + +PM +E + RF LR TI GL+T
Sbjct: 350 LKLTLILRQPMILE------KGQRFTLRDGNRTIGTGLVTDTP 386
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation
factor, protein synthesis, antibiotic, GTP-binding,
nucleotide-binding; HET: GNP PUL; 1.4A {Thermus
thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB:
2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z*
2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A*
2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Length = 405
Score = 33.3 bits (77), Expect = 0.052
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 7/46 (15%)
Query: 181 IETVRP-----MCVELYRDVK-ELG-RFMLRVSGVTIAAGLITKVI 219
+E V P VEL + V E G RF +R G T+ AG++TK++
Sbjct: 359 VEMVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKIL 404
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 30.1 bits (67), Expect = 0.78
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Query: 41 SNPSASAADQSFPDTSGFAVPECIPTKTPTQKKLGPSSST--PVTPRSQSPS---TPVSR 95
++PS S S+ TS P P+ +PT P+S + P +P S +P S
Sbjct: 1594 TSPSYSPTSPSYSPTSPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1652
Query: 96 SRSPATPTCTSPTPDQEPS 114
S SP +P + +P P+
Sbjct: 1653 SYSPTSPAYSPTSPSYSPT 1671
Score = 27.8 bits (61), Expect = 3.5
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 41 SNPSASAADQSFPDTSGFAVPECIPTKTPTQKKLGPSS-STPVTPRSQSPSTPV----SR 95
++PS S S+ TS P P+ +PT P+S S T S SP++P S
Sbjct: 1608 TSPSYSPTSPSYSPTSPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP 1666
Query: 96 SRSPATPTCTSPTPDQEPS 114
S SP +P+ + +P P+
Sbjct: 1667 SYSPTSPSYSPTSPSYSPT 1685
Score = 27.8 bits (61), Expect = 4.2
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 10/82 (12%)
Query: 43 PSASAADQSFPDTSGFAVPE------CIPTKTPTQKKLGPSSS--TPVTPRSQSPSTPVS 94
P+ S S+ TS P P+ +PT P+S +P +P SP++P
Sbjct: 1554 PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSY 1612
Query: 95 RSRSPATPTCTSPTPDQEPSRS 116
SP+ + TSP+
Sbjct: 1613 SPTSPSY-SPTSPSYSPTSPSY 1633
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 29.7 bits (66), Expect = 0.89
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 41 SNPSASAADQSFPDTSGFAVPECIPTKTPTQKKLGPSSS--TPVTPRSQSPSTPVSRSR- 97
++PS S S+ TS P P+ +PT P+S +P +P S SP++P
Sbjct: 1630 TSPSYSPTSPSYSPTSPSYSPTS-PSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTS 1687
Query: 98 ---SPATPTCTSPTPDQEPS 114
SP +P+ + +P P+
Sbjct: 1688 PSYSPTSPSYSPTSPSYSPT 1707
Score = 28.5 bits (63), Expect = 2.1
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 41 SNPSASAADQSFPDTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPSTPVSRSRSPA 100
++PS SA S+ TS P P+ +PT P+S + +P S S S P S S SP
Sbjct: 1602 TSPSYSATSPSYSPTSPSYSPTS-PSYSPTSPSYSPTSPSY-SPTSPSYS-PTSPSYSPT 1658
Query: 101 TPTCTSPTPDQEPSR 115
+P+ + +P P+
Sbjct: 1659 SPSYSPTSPSYSPTS 1673
Score = 27.3 bits (60), Expect = 5.5
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Query: 40 SSNPSASAADQSFPDTSGFAVPECIPTKTPTQKKLGPSSST--PVTPRSQSPSTPV---- 93
++PS S S+ TS P P+ +PT P+S + P +P S SP++P
Sbjct: 1664 PTSPSYSPTSPSYSPTSPSYSPTS-PSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPT 1721
Query: 94 SRSRSPATPTCTSPTPDQEPS 114
S S SP +P+ + +P P+
Sbjct: 1722 SPSYSPTSPSYSPTSPSYSPT 1742
>2cp5_A Restin; microtubule binding, cytoskeleton associated protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.34.10.1
Length = 141
Score = 27.6 bits (61), Expect = 1.9
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 53 PDTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPSTPVSRSRSPATPTCTSPTPDQE 112
+SG ++ + K PT K L P S+ TP + + S A+ T +S T ++
Sbjct: 3 SGSSGMSMLKPSGLKAPT-KILKPGSTALKTPTAVVAPVEKTISSEKASSTPSSETQEEF 61
Query: 113 PS 114
Sbjct: 62 VD 63
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer,
transferase, serine/threonine-protein kinase,
nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Length = 373
Score = 27.7 bits (62), Expect = 3.3
Identities = 14/128 (10%), Positives = 34/128 (26%), Gaps = 16/128 (12%)
Query: 45 ASAADQSFPDTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPSTPVSRSRSPATPTC 104
+S D + ++ + + + + P R+ + A
Sbjct: 9 SSGVDLGTENLYFQSMKNSGDQDSRSGHNEAKEVWSNADLTERMPVKS-KRTSALAVDIP 67
Query: 105 TSPTPDQEPSRSVKLVKLSNVYQVGFIKELKVGMHQQSLAESAVITRLLSQVHKTSGE-- 162
P P + K +++ Y V + L G + +G
Sbjct: 68 APPAPFDHRIVTAKQGAVNSFYTVSKTEILGGG--RFG------QVHKC--EETATGLKL 117
Query: 163 ---VIRKK 167
+I+ +
Sbjct: 118 AAKIIKTR 125
>3iyo_A Capsid protein; amino acid sequence, cryoelectron microscopy,
dimerization, image processing, computer-assist
molecular sequence DATA; 10.50A {Hepatitis e virus}
Length = 660
Score = 27.2 bits (59), Expect = 6.1
Identities = 15/113 (13%), Positives = 31/113 (27%), Gaps = 3/113 (2%)
Query: 41 SNPSASAADQSFPDTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPSTPVSRSRSPA 100
S S D+ FA+P PT P + ++ R + +
Sbjct: 34 SGGSGGGFWGDRVDSQPFAIPYIHPTN-PFAPDVTAAAGAGPRVRQPARPLGSAWRDQAQ 92
Query: 101 TPTCTS--PTPDQEPSRSVKLVKLSNVYQVGFIKELKVGMHQQSLAESAVITR 151
P S + + + V + + +Q ++ +T
Sbjct: 93 RPAVASRRRPTTAGAAPLTAVAPAHDTPPVPDVDSRGAILRRQYNLSTSPLTS 145
>1eys_C Photosynthetic reaction center; membrane protein complex, electron
transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A
{Thermochromatium tepidum} SCOP: a.138.1.2
Length = 382
Score = 26.8 bits (58), Expect = 6.7
Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Query: 50 QSFPDTSGFAVPECIPTKTPTQKKLGPSSSTPVTPRSQSPSTPVSRS-RSPATPTCTSPT 108
+ +P AV + + + P+++T P + + P + + + A P
Sbjct: 303 KDYPGLYKTAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAAAEPGAAEAA 362
Query: 109 PDQEPS 114
EP+
Sbjct: 363 GSVEPA 368
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.128 0.367
Gapped
Lambda K H
0.267 0.0763 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,194,761
Number of extensions: 172419
Number of successful extensions: 326
Number of sequences better than 10.0: 1
Number of HSP's gapped: 310
Number of HSP's successfully gapped: 35
Length of query: 232
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 142
Effective length of database: 4,188,903
Effective search space: 594824226
Effective search space used: 594824226
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.3 bits)