RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15204
         (232 letters)



>d1f60a2 b.44.1.1 (A:335-441) Elongation factor eEF-1alpha,
           C-terminal domain {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 107

 Score = 72.9 bits (179), Expect = 2e-17
 Identities = 23/81 (28%), Positives = 38/81 (46%)

Query: 138 MHQQSLAESAVITRLLSQVHKTSGEVIRKKPRALTKSMSAQVVIETVRPMCVELYRDVKE 197
           +   +   +     LL +  + SG+ +   P+ L    +A V     +PMCVE + +   
Sbjct: 25  LDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGDAALVKFVPSKPMCVEAFSEYPP 84

Query: 198 LGRFMLRVSGVTIAAGLITKV 218
           LGRF +R    T+A G+I  V
Sbjct: 85  LGRFAVRDMRQTVAVGVIKSV 105


>d1jnya2 b.44.1.1 (A:323-429) Elongation factor eEF-1alpha,
           C-terminal domain {Archaeon Sulfolobus solfataricus
           [TaxId: 2287]}
          Length = 107

 Score = 62.7 bits (152), Expect = 1e-13
 Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 4/91 (4%)

Query: 132 KELKVG----MHQQSLAESAVITRLLSQVHKTSGEVIRKKPRALTKSMSAQVVIETVRPM 187
             L  G    +H  + + +  ++ L+S++   +G+   K P+ L +   A V  + ++P+
Sbjct: 15  TALANGYTPVLHVHTASVACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPL 74

Query: 188 CVELYRDVKELGRFMLRVSGVTIAAGLITKV 218
           CVE Y +   LGRF +R  G T+  G+I  V
Sbjct: 75  CVEKYNEFPPLGRFAMRDMGKTVGVGIIVDV 105


>d1zunb2 b.44.1.1 (B:330-434) Sulfate adenylate transferase subunit
           cysN/C, EF-Tu domain 3-like domain {Pseudomonas syringae
           pv. tomato [TaxId: 323]}
          Length = 105

 Score = 48.5 bits (115), Expect = 2e-08
 Identities = 16/90 (17%), Positives = 38/90 (42%), Gaps = 8/90 (8%)

Query: 132 KELKVG----MHQQSLAESAVITRLLSQVHKTSGEVIRKKPRALTKSMSAQVVIETVRPM 187
           + +  G    + + +      I  +  +V   + E       +L  +   +V +    P+
Sbjct: 16  EPMLPGKKYDIKRATSYVPGSIASITHRVDVNTLE--EGPASSLQLNEIGRVKVSLDAPI 73

Query: 188 CVELYRDVKELGRFML--RVSGVTIAAGLI 215
            ++ Y   +  G F++  R++  T+AAG+I
Sbjct: 74  ALDGYSSNRTTGAFIVIDRLTNGTVAAGMI 103


>d2c78a2 b.44.1.1 (A:313-405) Elongation factor Tu (EF-Tu) {Thermus
           thermophilus [TaxId: 274]}
          Length = 93

 Score = 35.7 bits (82), Expect = 7e-04
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 6/46 (13%)

Query: 174 SMSAQVVIETVRPMCVELYRDVKELGRFMLRVSGVTIAAGLITKVI 219
             +    +E ++P+ +E      E  RF +R  G T+ AG++TK++
Sbjct: 53  GDNVTFTVELIKPVALE------EGLRFAIREGGRTVGAGVVTKIL 92


>d1d2ea2 b.44.1.1 (A:349-451) Elongation factor Tu (EF-Tu) {Cow (Bos
           taurus), mitochondrial [TaxId: 9913]}
          Length = 103

 Score = 34.2 bits (78), Expect = 0.003
 Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 7/75 (9%)

Query: 146 SAVITRLLSQVHKTSGEVIRKKPRALTK-SMSAQVVIETVRPMCVELYRDVKELGRFMLR 204
           S  +  + S     +  +I    + L       ++ +   +PM +E      +  RF LR
Sbjct: 24  SHFMPVMFSLTWDMACRIILPPGKELAMPGEDLKLTLILRQPMILE------KGQRFTLR 77

Query: 205 VSGVTIAAGLITKVI 219
               TI  GL+T   
Sbjct: 78  DGNRTIGTGLVTDTP 92


>d1neea1 d.241.1.1 (A:1-98) Translation initiation factor 2 beta,
           aIF2beta, N-terminal domain {Archaeon Methanobacterium
           thermoautotrophicum [TaxId: 145262]}
          Length = 98

 Score = 25.5 bits (56), Expect = 2.7
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 150 TRLLSQVHKTSGEVIRKK-PRALTKSMSAQVVIETVRPMCVELYRDVKELGRFMLR 204
            R + Q+     E  R + P+A +     +  I+  R +   L RD + L +F+LR
Sbjct: 9   ERAIDQLPPEVFETKRFEVPKAYSVIQGNRTFIQNFREVADALNRDPQHLLKFLLR 64


>d3beca2 e.3.1.1 (A:4-262) Penicillin-binding protein 5, N-terminal
           domain {Escherichia coli [TaxId: 562]}
          Length = 259

 Score = 26.3 bits (57), Expect = 2.8
 Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 13/59 (22%)

Query: 144 AESAVITRLLSQVHKTSGEVIRKK-------PRALTKSMSAQVVIETVRPMCVELYRDV 195
           AES ++      +   SG+V+ ++       P +LTK M++ V+ + ++    +    V
Sbjct: 14  AESYIL------IDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLV 66


>d1lqva_ d.19.1.1 (A:) Endothelial protein C receptor {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 172

 Score = 26.0 bits (57), Expect = 3.3
 Identities = 7/60 (11%), Positives = 20/60 (33%), Gaps = 3/60 (5%)

Query: 94  SRSRSPATPTCTSPTPDQEPSRSVKLVKLSNVYQVGFIKELKVGMHQQSLAESAVITRLL 153
               +            +  +R+   ++    Y + F   +++   +++LA    I   L
Sbjct: 37  GPDTNTTIIQLQPLQEPESWARTQSGLQ---SYLLQFHGLVRLVHQERTLAFPLTIRCFL 93


>d1hbna1 a.89.1.1 (A:270-549) Alpha chain {Archaeon Methanobacterium
           thermoautotrophicum [TaxId: 145262]}
          Length = 280

 Score = 25.1 bits (55), Expect = 7.9
 Identities = 6/11 (54%), Positives = 11/11 (100%)

Query: 221 DQCGSTNLYNI 231
           DQCG++N+++I
Sbjct: 181 DQCGASNVFSI 191


>d1e6ya1 a.89.1.1 (A:1284-1569) Alpha chain {Archaeon Methanosarcina
           barkeri [TaxId: 2208]}
          Length = 286

 Score = 25.0 bits (55), Expect = 8.6
 Identities = 6/11 (54%), Positives = 9/11 (81%)

Query: 221 DQCGSTNLYNI 231
           DQCG+TN+ + 
Sbjct: 187 DQCGATNVLSY 197


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.128    0.367 

Gapped
Lambda     K      H
   0.267   0.0487    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 773,132
Number of extensions: 32118
Number of successful extensions: 87
Number of sequences better than 10.0: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 13
Length of query: 232
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 150
Effective length of database: 1,281,736
Effective search space: 192260400
Effective search space used: 192260400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.0 bits)