Query psy15206
Match_columns 232
No_of_seqs 161 out of 1565
Neff 11.7
Searched_HMMs 46136
Date Fri Aug 16 23:24:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15206.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15206hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 100.0 4E-31 8.8E-36 212.7 22.6 220 10-231 238-499 (1051)
2 KOG3513|consensus 100.0 1.2E-29 2.5E-34 204.4 22.6 223 7-231 326-597 (1051)
3 KOG4194|consensus 100.0 9.4E-30 2E-34 192.9 16.9 217 12-231 503-781 (873)
4 PHA02785 IL-beta-binding prote 99.9 6.2E-24 1.3E-28 158.3 21.0 207 21-231 34-312 (326)
5 KOG4221|consensus 99.9 2.7E-24 5.8E-29 173.9 17.1 221 9-231 137-401 (1381)
6 KOG4221|consensus 99.9 1.4E-22 3.1E-27 164.2 21.9 216 12-231 41-311 (1381)
7 KOG4222|consensus 99.9 2E-23 4.4E-28 168.0 12.1 221 10-231 29-298 (1281)
8 PHA02826 IL-1 receptor-like pr 99.9 4.3E-21 9.4E-26 134.9 15.6 143 82-231 30-208 (227)
9 KOG4222|consensus 99.9 9.9E-21 2.1E-25 152.8 12.6 226 4-231 217-494 (1281)
10 KOG4194|consensus 99.8 9.6E-18 2.1E-22 128.4 11.5 152 80-231 509-689 (873)
11 PHA02785 IL-beta-binding prote 99.7 2.7E-16 5.8E-21 117.5 13.5 143 85-231 37-197 (326)
12 cd05851 Ig3_Contactin-1 Third 99.7 3.1E-15 6.8E-20 90.2 11.3 81 80-161 7-87 (88)
13 cd05762 Ig8_MLCK Eighth immuno 99.7 6.1E-15 1.3E-19 90.7 12.4 85 80-165 6-94 (98)
14 PHA02826 IL-1 receptor-like pr 99.6 1.4E-13 3E-18 97.2 16.2 123 20-149 29-211 (227)
15 cd04968 Ig3_Contactin_like Thi 99.6 4.1E-14 8.9E-19 85.6 11.2 81 80-161 7-87 (88)
16 cd05771 IgC_Tapasin_R Tapasin- 99.6 1.5E-13 3.2E-18 90.5 13.0 76 127-203 2-79 (139)
17 cd05852 Ig5_Contactin-1 Fifth 99.6 6.1E-14 1.3E-18 81.3 9.4 70 89-159 1-71 (73)
18 cd05728 Ig4_Contactin-2-like F 99.6 7.3E-14 1.6E-18 83.8 9.9 80 80-160 5-84 (85)
19 cd05745 Ig3_Peroxidasin Third 99.6 5.7E-14 1.2E-18 82.0 9.0 72 88-160 1-73 (74)
20 cd05737 Ig_Myomesin_like_C C-t 99.6 1.6E-13 3.4E-18 83.7 11.2 79 80-159 7-90 (92)
21 cd04975 Ig4_SCFR_like Fourth i 99.5 1.9E-13 4E-18 84.2 10.8 81 81-162 10-100 (101)
22 cd05867 Ig4_L1-CAM_like Fourth 99.5 2.1E-13 4.5E-18 80.0 10.3 72 89-161 1-75 (76)
23 cd05851 Ig3_Contactin-1 Third 99.5 4.6E-14 1E-18 85.1 7.6 68 164-231 1-73 (88)
24 cd05740 Ig_CEACAM_D4 Fourth im 99.5 4.3E-13 9.3E-18 81.2 11.4 80 80-161 9-90 (91)
25 cd04973 Ig1_FGFR First immunog 99.5 3.8E-13 8.1E-18 79.5 10.2 69 82-151 2-70 (79)
26 cd05747 Ig5_Titin_like M5, fif 99.5 6E-13 1.3E-17 81.1 11.4 83 73-157 3-89 (92)
27 cd05735 Ig8_DSCAM Eight immuno 99.5 3.5E-13 7.7E-18 81.2 10.1 76 89-165 1-85 (88)
28 cd04976 Ig2_VEGFR Second immun 99.5 3E-13 6.6E-18 78.0 8.9 69 92-161 1-69 (71)
29 cd05859 Ig4_PDGFR-alpha Fourth 99.5 8.3E-13 1.8E-17 81.5 11.2 79 83-162 12-100 (101)
30 cd05894 Ig_C5_MyBP-C C5 immuno 99.5 8.5E-13 1.8E-17 79.1 10.9 77 83-160 4-85 (86)
31 cd05863 Ig2_VEGFR-3 Second imm 99.5 2.6E-13 5.7E-18 76.7 8.2 65 92-161 1-65 (67)
32 cd05868 Ig4_NrCAM Fourth immun 99.5 5.8E-13 1.3E-17 78.0 9.7 72 89-161 1-75 (76)
33 cd05724 Ig2_Robo Second immuno 99.5 1.5E-12 3.2E-17 78.5 11.1 80 81-160 3-85 (86)
34 cd05865 Ig1_NCAM-1 First immun 99.5 1.2E-12 2.5E-17 80.0 10.6 81 81-161 7-95 (96)
35 cd05762 Ig8_MLCK Eighth immuno 99.5 3.8E-13 8.2E-18 82.7 8.4 67 165-231 1-76 (98)
36 cd05723 Ig4_Neogenin Fourth im 99.5 8.4E-13 1.8E-17 76.3 9.4 69 91-160 1-70 (71)
37 cd04969 Ig5_Contactin_like Fif 99.5 8.9E-13 1.9E-17 76.7 9.5 70 89-159 1-71 (73)
38 cd04978 Ig4_L1-NrCAM_like Four 99.5 9.8E-13 2.1E-17 77.3 9.8 72 89-161 1-75 (76)
39 cd05849 Ig1_Contactin-1 First 99.5 2.9E-12 6.3E-17 77.9 11.8 71 89-159 19-91 (93)
40 cd05850 Ig1_Contactin-2 First 99.5 3.9E-12 8.5E-17 77.7 12.3 80 80-159 7-92 (94)
41 cd05853 Ig6_Contactin-4 Sixth 99.5 1.1E-12 2.3E-17 77.8 9.5 75 90-165 1-85 (85)
42 cd05747 Ig5_Titin_like M5, fif 99.5 4.6E-13 9.9E-18 81.7 8.1 68 164-231 3-79 (92)
43 cd05857 Ig2_FGFR Second immuno 99.5 1.4E-12 3E-17 78.4 10.2 76 84-160 4-84 (85)
44 cd05866 Ig1_NCAM-2 First immun 99.5 1.3E-12 2.9E-17 79.0 10.0 80 81-161 7-91 (92)
45 cd05725 Ig3_Robo Third immunog 99.5 8.6E-13 1.9E-17 75.9 8.8 68 92-160 1-68 (69)
46 cd05892 Ig_Myotilin_C C-termin 99.5 9.5E-13 2.1E-17 76.5 8.9 68 92-160 1-74 (75)
47 cd05773 Ig8_hNephrin_like Eigh 99.5 3.2E-12 6.9E-17 80.2 11.9 77 88-165 22-108 (109)
48 cd05848 Ig1_Contactin-5 First 99.5 2.4E-12 5.3E-17 78.6 11.1 70 88-157 18-90 (94)
49 cd05854 Ig6_Contactin-2 Sixth 99.5 1.9E-12 4.2E-17 77.4 10.4 75 90-165 1-85 (85)
50 cd07693 Ig1_Robo First immunog 99.5 2.2E-12 4.7E-17 80.1 11.0 87 74-161 2-99 (100)
51 cd04972 Ig_TrkABC_d4 Fourth do 99.5 2.6E-12 5.6E-17 78.0 11.0 78 81-159 7-88 (90)
52 cd05730 Ig3_NCAM-1_like Third 99.4 3.4E-12 7.5E-17 78.3 11.2 79 83-162 12-93 (95)
53 cd05739 Ig3_RPTP_IIa_LAR_like 99.4 2E-12 4.3E-17 74.1 9.3 61 89-151 1-61 (69)
54 cd05752 Ig1_FcgammaR_like Frst 99.4 1.4E-12 3.1E-17 76.4 8.6 65 165-231 1-66 (78)
55 cd05864 Ig2_VEGFR-2 Second imm 99.4 1.8E-12 3.9E-17 74.2 8.7 59 92-151 1-59 (70)
56 cd05749 Ig2_Tyro3_like Second 99.4 2.2E-12 4.7E-17 76.1 9.2 75 80-158 4-79 (81)
57 cd05746 Ig4_Peroxidasin Fourth 99.4 1.7E-12 3.6E-17 74.6 8.6 60 92-151 1-61 (69)
58 cd05891 Ig_M-protein_C C-termi 99.4 4.1E-12 8.8E-17 77.3 10.7 79 80-159 7-90 (92)
59 cd05722 Ig1_Neogenin First imm 99.4 2.4E-12 5.2E-17 79.0 9.8 81 80-160 5-94 (95)
60 PF07679 I-set: Immunoglobulin 99.4 3.3E-12 7.1E-17 77.7 10.3 80 80-160 6-89 (90)
61 cd04970 Ig6_Contactin_like Six 99.4 2.3E-12 4.9E-17 77.4 9.4 75 90-165 1-85 (85)
62 cd05893 Ig_Palladin_C C-termin 99.4 1.6E-12 3.5E-17 75.6 8.3 68 92-160 1-74 (75)
63 PF07679 I-set: Immunoglobulin 99.4 2.2E-12 4.7E-17 78.5 9.2 67 165-231 1-76 (90)
64 cd05876 Ig3_L1-CAM Third immun 99.4 1.6E-12 3.5E-17 75.1 8.0 69 92-161 1-70 (71)
65 cd05738 Ig2_RPTP_IIa_LAR_like 99.4 2.2E-12 4.8E-17 75.2 8.6 70 92-161 1-73 (74)
66 cd05748 Ig_Titin_like Immunogl 99.4 4E-12 8.7E-17 74.2 9.7 69 91-160 1-73 (74)
67 cd05863 Ig2_VEGFR-3 Second imm 99.4 4.9E-13 1.1E-17 75.6 5.2 50 182-231 1-51 (67)
68 cd05856 Ig2_FGFRL1-like Second 99.4 2.9E-12 6.3E-17 76.5 8.8 75 85-160 5-81 (82)
69 cd05869 Ig5_NCAM-1 Fifth immun 99.4 6.9E-12 1.5E-16 77.2 10.5 77 83-160 11-96 (97)
70 cd05870 Ig5_NCAM-2 Fifth immun 99.4 9.4E-12 2E-16 76.8 11.0 79 81-160 8-97 (98)
71 cd05760 Ig2_PTK7 Second immuno 99.4 4.1E-12 8.8E-17 74.6 8.9 70 92-161 1-74 (77)
72 cd04975 Ig4_SCFR_like Fourth i 99.4 1.5E-12 3.2E-17 80.2 7.3 61 171-231 10-85 (101)
73 cd07702 Ig2_VEGFR-1 Second imm 99.4 2.2E-12 4.8E-17 74.0 7.5 58 92-149 1-59 (72)
74 cd04968 Ig3_Contactin_like Thi 99.4 1.8E-12 4E-17 78.3 7.5 67 165-231 2-73 (88)
75 cd05744 Ig_Myotilin_C_like Imm 99.4 6.3E-12 1.4E-16 73.3 9.3 68 92-160 1-74 (75)
76 cd05726 Ig4_Robo Fhird immunog 99.4 6.6E-12 1.4E-16 76.2 9.7 74 89-163 1-83 (90)
77 cd05737 Ig_Myomesin_like_C C-t 99.4 3E-12 6.4E-17 78.0 7.9 61 171-231 8-78 (92)
78 cd05756 Ig1_IL1R_like First im 99.4 6.7E-12 1.5E-16 76.4 9.2 77 83-160 8-93 (94)
79 cd05745 Ig3_Peroxidasin Third 99.4 1.5E-12 3.2E-17 76.0 6.1 54 178-231 1-60 (74)
80 cd05869 Ig5_NCAM-1 Fifth immun 99.4 4.9E-12 1.1E-16 77.9 8.2 68 164-231 2-83 (97)
81 cd05855 Ig_TrkB_d5 Fifth domai 99.4 8.8E-12 1.9E-16 72.8 8.5 64 94-158 3-75 (79)
82 cd05732 Ig5_NCAM-1_like Fifth 99.4 2.4E-11 5.2E-16 74.8 11.0 78 81-159 8-94 (96)
83 cd07693 Ig1_Robo First immunog 99.4 6.4E-12 1.4E-16 78.0 8.4 68 164-231 1-84 (100)
84 cd05859 Ig4_PDGFR-alpha Fourth 99.4 5E-12 1.1E-16 78.0 7.7 59 173-231 12-85 (101)
85 cd04971 Ig_TrKABC_d5 Fifth dom 99.4 1.2E-11 2.6E-16 73.0 9.1 64 94-158 3-77 (81)
86 cd04977 Ig1_NCAM-1_like First 99.4 1.7E-11 3.6E-16 74.6 9.9 80 80-160 6-91 (92)
87 cd05728 Ig4_Contactin-2-like F 99.4 4.8E-12 1E-16 75.9 7.1 63 169-231 4-71 (85)
88 cd05848 Ig1_Contactin-5 First 99.4 7.9E-12 1.7E-16 76.3 8.2 67 165-231 2-79 (94)
89 cd05865 Ig1_NCAM-1 First immun 99.3 5.8E-12 1.3E-16 76.9 7.5 64 168-231 4-80 (96)
90 cd05894 Ig_C5_MyBP-C C5 immuno 99.3 1.1E-11 2.4E-16 74.3 8.5 59 173-231 4-72 (86)
91 cd05730 Ig3_NCAM-1_like Third 99.3 4.5E-12 9.8E-17 77.8 6.8 59 173-231 12-78 (95)
92 cd05743 Ig_Perlecan_D2_like Im 99.3 1.8E-11 4E-16 72.1 9.0 63 89-151 1-67 (78)
93 cd05870 Ig5_NCAM-2 Fifth immun 99.3 1.2E-11 2.6E-16 76.3 8.6 67 164-231 2-84 (98)
94 cd04979 Ig_Semaphorin_C Immuno 99.3 3.3E-11 7.2E-16 72.9 10.4 81 81-162 3-87 (89)
95 cd05852 Ig5_Contactin-1 Fifth 99.3 4.7E-12 1E-16 73.3 6.1 53 179-231 1-59 (73)
96 cd05749 Ig2_Tyro3_like Second 99.3 6.6E-12 1.4E-16 74.0 6.8 61 169-231 3-67 (81)
97 cd04972 Ig_TrkABC_d4 Fourth do 99.3 1.1E-11 2.3E-16 75.2 7.9 61 171-231 7-76 (90)
98 cd05764 Ig_2 Subgroup of the i 99.3 2.8E-11 6E-16 70.6 9.4 71 89-160 1-73 (74)
99 cd05731 Ig3_L1-CAM_like Third 99.3 1.6E-11 3.5E-16 71.1 8.3 69 92-161 1-70 (71)
100 cd05763 Ig_1 Subgroup of the i 99.3 1.9E-11 4E-16 71.5 8.6 69 92-161 1-74 (75)
101 cd05734 Ig7_DSCAM Seventh immu 99.3 1.9E-11 4.1E-16 72.3 8.5 69 92-160 1-78 (79)
102 cd05857 Ig2_FGFR Second immuno 99.3 9.1E-12 2E-16 74.8 7.1 57 175-231 5-71 (85)
103 cd05892 Ig_Myotilin_C C-termin 99.3 6.6E-12 1.4E-16 73.0 6.1 50 182-231 1-61 (75)
104 cd05867 Ig4_L1-CAM_like Fourth 99.3 7.5E-12 1.6E-16 73.4 6.3 53 179-231 1-61 (76)
105 cd07702 Ig2_VEGFR-1 Second imm 99.3 3.8E-12 8.2E-17 73.0 4.8 50 182-231 1-56 (72)
106 cd05850 Ig1_Contactin-2 First 99.3 2.1E-11 4.6E-16 74.4 8.3 67 165-231 2-79 (94)
107 cd04974 Ig3_FGFR Third immunog 99.3 2.7E-11 5.8E-16 73.4 8.7 72 89-161 1-89 (90)
108 cd05891 Ig_M-protein_C C-termi 99.3 1.5E-11 3.2E-16 74.8 7.5 61 171-231 8-78 (92)
109 cd05739 Ig3_RPTP_IIa_LAR_like 99.3 1.4E-11 3.1E-16 70.5 6.9 51 179-231 1-56 (69)
110 cd05864 Ig2_VEGFR-2 Second imm 99.3 6.3E-12 1.4E-16 72.0 5.4 50 182-231 1-54 (70)
111 cd05873 Ig_Sema4D_like Immunog 99.3 3.9E-11 8.5E-16 71.4 8.8 67 81-148 3-70 (87)
112 cd05874 Ig6_NrCAM Sixth immuno 99.3 5.2E-11 1.1E-15 69.8 9.1 67 92-158 1-75 (77)
113 cd05732 Ig5_NCAM-1_like Fifth 99.3 1.8E-11 3.8E-16 75.4 7.2 67 164-231 2-82 (96)
114 cd05743 Ig_Perlecan_D2_like Im 99.3 1.4E-11 3.1E-16 72.5 6.5 53 179-231 1-62 (78)
115 cd04976 Ig2_VEGFR Second immun 99.3 7.7E-12 1.7E-16 72.2 5.1 50 182-231 1-55 (71)
116 cd05858 Ig3_FGFR-2 Third immun 99.3 5.3E-11 1.1E-15 72.2 9.0 72 89-161 1-89 (90)
117 cd04967 Ig1_Contactin First Ig 99.3 9.5E-11 2.1E-15 71.2 10.2 65 89-153 19-86 (91)
118 cd05849 Ig1_Contactin-1 First 99.3 3.4E-11 7.3E-16 73.2 8.0 67 165-231 2-78 (93)
119 cd05733 Ig6_L1-CAM_like Sixth 99.3 4E-11 8.6E-16 70.4 8.0 66 92-157 1-74 (77)
120 cd04973 Ig1_FGFR First immunog 99.3 2E-11 4.3E-16 72.1 6.6 59 172-231 2-65 (79)
121 cd05723 Ig4_Neogenin Fourth im 99.3 2.1E-11 4.5E-16 70.4 6.6 51 181-231 1-57 (71)
122 cd05866 Ig1_NCAM-2 First immun 99.3 3.7E-11 7.9E-16 72.7 7.9 63 168-231 4-76 (92)
123 cd05736 Ig2_Follistatin_like S 99.3 8.9E-11 1.9E-15 68.8 9.4 70 92-162 1-74 (76)
124 cd05758 Ig5_KIRREL3-like Fifth 99.3 2E-10 4.4E-15 70.8 11.2 71 81-151 8-90 (98)
125 cd05868 Ig4_NrCAM Fourth immun 99.3 1.5E-11 3.2E-16 72.0 5.8 53 179-231 1-61 (76)
126 cd05740 Ig_CEACAM_D4 Fourth im 99.3 2.2E-11 4.8E-16 73.7 6.7 60 171-231 10-75 (91)
127 cd05757 Ig2_IL1R_like Second i 99.3 1.1E-10 2.4E-15 70.6 9.7 68 84-151 5-77 (92)
128 cd05752 Ig1_FcgammaR_like Frst 99.3 6.4E-11 1.4E-15 69.4 8.3 62 80-148 6-68 (78)
129 cd05893 Ig_Palladin_C C-termin 99.3 1.6E-11 3.4E-16 71.5 5.6 50 182-231 1-61 (75)
130 cd05875 Ig6_hNeurofascin_like 99.3 8.6E-11 1.9E-15 68.9 8.5 66 92-157 1-74 (77)
131 cd04969 Ig5_Contactin_like Fif 99.2 3.6E-11 7.8E-16 69.9 6.7 53 179-231 1-59 (73)
132 cd05773 Ig8_hNephrin_like Eigh 99.2 4.9E-11 1.1E-15 74.9 7.6 70 162-231 2-90 (109)
133 cd05765 Ig_3 Subgroup of the i 99.2 1E-10 2.2E-15 69.5 8.7 71 89-160 1-80 (81)
134 cd04977 Ig1_NCAM-1_like First 99.2 8.2E-11 1.8E-15 71.5 8.3 64 167-231 3-77 (92)
135 cd05750 Ig_Pro_neuregulin Immu 99.2 6.5E-11 1.4E-15 69.3 7.6 60 92-151 1-68 (75)
136 cd05742 Ig1_VEGFR_like First i 99.2 1.1E-10 2.4E-15 69.8 8.6 71 89-160 1-82 (84)
137 cd05722 Ig1_Neogenin First imm 99.2 5.2E-11 1.1E-15 73.0 7.2 63 169-231 4-79 (95)
138 cd05735 Ig8_DSCAM Eight immuno 99.2 5.6E-11 1.2E-15 71.6 7.2 53 179-231 1-67 (88)
139 cd04978 Ig4_L1-NrCAM_like Four 99.2 3.3E-11 7.1E-16 70.7 5.9 53 179-231 1-61 (76)
140 cd05724 Ig2_Robo Second immuno 99.2 5.9E-11 1.3E-15 71.4 7.0 61 171-231 3-71 (86)
141 cd05760 Ig2_PTK7 Second immuno 99.2 4E-11 8.6E-16 70.4 6.0 50 182-231 1-58 (77)
142 cd05744 Ig_Myotilin_C_like Imm 99.2 5.1E-11 1.1E-15 69.5 6.4 50 182-231 1-61 (75)
143 cd05746 Ig4_Peroxidasin Fourth 99.2 2.4E-11 5.3E-16 69.7 5.0 50 182-231 1-56 (69)
144 cd05855 Ig_TrkB_d5 Fifth domai 99.2 4.6E-11 1E-15 69.8 6.0 48 184-231 3-64 (79)
145 cd05753 Ig2_FcgammaR_like Seco 99.2 9.1E-11 2E-15 69.8 7.3 73 84-160 9-82 (83)
146 cd05754 Ig3_Perlecan_like Thir 99.2 3.2E-10 6.9E-15 68.0 9.8 70 80-151 7-77 (85)
147 cd05861 Ig1_PDGFR-alphabeta Fr 99.2 4.7E-10 1E-14 66.9 9.8 73 89-161 1-82 (84)
148 cd05856 Ig2_FGFRL1-like Second 99.2 6.4E-11 1.4E-15 70.6 6.0 57 175-231 5-68 (82)
149 cd05748 Ig_Titin_like Immunogl 99.2 1.2E-10 2.6E-15 67.9 6.8 51 181-231 1-60 (74)
150 cd05873 Ig_Sema4D_like Immunog 99.2 1.3E-10 2.8E-15 69.1 6.9 60 171-231 3-68 (87)
151 cd04971 Ig_TrKABC_d5 Fifth dom 99.2 1.2E-10 2.6E-15 68.8 6.3 49 183-231 2-66 (81)
152 cd05729 Ig2_FGFR_like Second i 99.2 9.8E-10 2.1E-14 65.9 10.4 75 84-159 4-83 (85)
153 cd05882 Ig1_Necl-1 First (N-te 99.2 3E-10 6.6E-15 69.1 7.9 60 172-231 5-82 (95)
154 cd05738 Ig2_RPTP_IIa_LAR_like 99.2 1.2E-10 2.7E-15 67.7 6.0 50 182-231 1-58 (74)
155 cd04967 Ig1_Contactin First Ig 99.2 4.2E-10 9.2E-15 68.4 8.5 67 165-231 2-79 (91)
156 cd05758 Ig5_KIRREL3-like Fifth 99.2 3.3E-10 7.2E-15 69.8 8.1 67 164-231 2-85 (98)
157 cd05876 Ig3_L1-CAM Third immun 99.2 6.2E-11 1.3E-15 68.4 4.5 50 182-231 1-56 (71)
158 cd05882 Ig1_Necl-1 First (N-te 99.1 1.4E-09 3E-14 66.2 10.2 68 81-148 4-84 (95)
159 smart00408 IGc2 Immunoglobulin 99.1 6.4E-10 1.4E-14 62.4 8.3 62 88-149 1-62 (63)
160 cd05858 Ig3_FGFR-2 Third immun 99.1 1.8E-10 3.9E-15 69.8 6.3 53 179-231 1-75 (90)
161 cd04974 Ig3_FGFR Third immunog 99.1 2.3E-10 4.9E-15 69.3 6.7 53 179-231 1-75 (90)
162 cd05753 Ig2_FcgammaR_like Seco 99.1 2.5E-10 5.4E-15 67.9 6.4 59 173-231 8-68 (83)
163 cd05725 Ig3_Robo Third immunog 99.1 1.2E-10 2.5E-15 67.0 4.7 50 182-231 1-55 (69)
164 cd05750 Ig_Pro_neuregulin Immu 99.1 1.6E-10 3.5E-15 67.6 5.2 50 182-231 1-63 (75)
165 cd05764 Ig_2 Subgroup of the i 99.1 4.5E-10 9.8E-15 65.5 6.9 53 179-231 1-60 (74)
166 cd07701 Ig1_Necl-3 First (N-te 99.1 1.8E-09 3.8E-14 66.0 9.7 68 81-148 4-84 (95)
167 cd05895 Ig_Pro_neuregulin-1 Im 99.1 5.6E-10 1.2E-14 65.4 7.2 60 92-151 1-69 (76)
168 cd05854 Ig6_Contactin-2 Sixth 99.1 4.6E-10 1E-14 67.1 6.9 52 180-231 1-67 (85)
169 cd05731 Ig3_L1-CAM_like Third 99.1 2E-10 4.4E-15 66.4 5.1 50 182-231 1-56 (71)
170 cd05763 Ig_1 Subgroup of the i 99.1 2.5E-10 5.3E-15 66.8 5.1 50 182-231 1-60 (75)
171 cd05726 Ig4_Robo Fhird immunog 99.1 4.7E-10 1E-14 68.0 6.1 53 179-231 1-67 (90)
172 cd05871 Ig_Semaphorin_classIII 99.1 4.7E-09 1E-13 63.5 10.4 77 84-162 6-89 (91)
173 cd05756 Ig1_IL1R_like First im 99.1 3.8E-10 8.3E-15 68.7 5.5 59 173-231 8-80 (94)
174 cd04970 Ig6_Contactin_like Six 99.1 5.9E-10 1.3E-14 66.8 6.2 52 180-231 1-67 (85)
175 cd05874 Ig6_NrCAM Sixth immuno 99.1 5.3E-10 1.2E-14 65.5 5.8 50 182-231 1-63 (77)
176 cd05733 Ig6_L1-CAM_like Sixth 99.1 4.8E-10 1.1E-14 65.8 5.7 50 182-231 1-63 (77)
177 KOG3515|consensus 99.1 2.9E-09 6.4E-14 85.6 11.3 196 9-206 4-249 (741)
178 PF00047 ig: Immunoglobulin do 99.0 3.8E-10 8.2E-15 63.8 4.6 52 179-230 1-64 (64)
179 cd05853 Ig6_Contactin-4 Sixth 99.0 6.3E-10 1.4E-14 65.9 5.5 52 180-231 1-67 (85)
180 PF13895 Ig_2: Immunoglobulin 99.0 2.2E-09 4.8E-14 63.5 8.0 57 174-231 9-65 (80)
181 cd05742 Ig1_VEGFR_like First i 99.0 8.5E-10 1.8E-14 66.0 5.9 53 179-231 1-69 (84)
182 cd05736 Ig2_Follistatin_like S 99.0 8.7E-10 1.9E-14 64.6 5.7 50 182-231 1-59 (76)
183 cd05895 Ig_Pro_neuregulin-1 Im 99.0 8.8E-10 1.9E-14 64.6 5.6 50 182-231 1-64 (76)
184 cd04979 Ig_Semaphorin_C Immuno 99.0 1.1E-09 2.4E-14 66.2 6.1 60 171-231 3-71 (89)
185 cd05765 Ig_3 Subgroup of the i 99.0 7.9E-10 1.7E-14 65.7 5.3 53 179-231 1-67 (81)
186 cd07690 Ig1_CD4 First immunogl 99.0 1.8E-09 4E-14 65.3 6.9 57 175-231 3-85 (94)
187 cd05727 Ig2_Contactin-2-like S 99.0 3.4E-09 7.3E-14 64.1 7.9 69 82-150 11-84 (96)
188 cd05861 Ig1_PDGFR-alphabeta Fr 99.0 1.9E-09 4.1E-14 64.3 6.7 53 179-231 1-66 (84)
189 smart00408 IGc2 Immunoglobulin 99.0 2.2E-09 4.7E-14 60.2 6.6 54 178-231 1-59 (63)
190 KOG3515|consensus 99.0 3.3E-09 7.1E-14 85.3 9.8 146 85-231 18-183 (741)
191 cd05757 Ig2_IL1R_like Second i 99.0 1E-09 2.2E-14 66.4 5.4 58 174-231 5-72 (92)
192 cd05875 Ig6_hNeurofascin_like 99.0 1.4E-09 3E-14 63.7 5.8 50 182-231 1-63 (77)
193 cd05729 Ig2_FGFR_like Second i 99.0 2.9E-09 6.3E-14 63.8 7.4 57 175-231 5-71 (85)
194 PF13895 Ig_2: Immunoglobulin 99.0 5.2E-09 1.1E-13 61.9 8.2 71 84-160 9-79 (80)
195 cd07701 Ig1_Necl-3 First (N-te 99.0 3.4E-09 7.4E-14 64.7 7.0 61 171-231 4-82 (95)
196 cd05754 Ig3_Perlecan_like Thir 99.0 2.5E-09 5.4E-14 64.1 6.2 62 170-231 7-72 (85)
197 cd05734 Ig7_DSCAM Seventh immu 99.0 1.3E-09 2.9E-14 64.3 4.8 50 182-231 1-64 (79)
198 cd05872 Ig_Sema4B_like Immunog 99.0 1.5E-08 3.3E-13 59.9 9.2 66 82-148 4-69 (85)
199 cd05898 Ig5_KIRREL3 Fifth immu 99.0 6.2E-09 1.3E-13 63.4 7.8 67 164-231 2-85 (98)
200 cd05845 Ig2_L1-CAM_like Second 99.0 4.1E-09 8.9E-14 63.6 6.9 71 80-150 9-83 (95)
201 cd05898 Ig5_KIRREL3 Fifth immu 99.0 2.3E-08 5E-13 60.9 10.3 72 80-151 7-90 (98)
202 cd05717 Ig1_Necl-1-3_like Firs 99.0 2.1E-08 4.5E-13 61.4 10.0 69 81-149 4-85 (95)
203 PF00047 ig: Immunoglobulin do 98.9 3.4E-09 7.4E-14 59.8 5.3 57 89-145 1-64 (64)
204 cd05862 Ig1_VEGFR First immuno 98.9 1.5E-08 3.2E-13 60.7 7.9 72 89-161 1-84 (86)
205 smart00409 IG Immunoglobulin. 98.9 9.7E-08 2.1E-12 56.9 11.2 69 83-151 3-76 (86)
206 smart00410 IG_like Immunoglobu 98.9 9.7E-08 2.1E-12 56.9 11.2 69 83-151 3-76 (86)
207 cd05896 Ig1_IL1RAPL-1_like Fir 98.9 3.6E-08 7.7E-13 60.0 9.0 67 84-150 10-94 (104)
208 cd05885 Ig2_Necl-4 Second immu 98.9 3.4E-08 7.4E-13 57.6 8.3 60 92-151 2-68 (80)
209 cd05897 Ig2_IL1R2_like Second 98.9 2.8E-08 6E-13 60.1 8.2 67 85-151 6-80 (95)
210 cd05727 Ig2_Contactin-2-like S 98.9 5.1E-09 1.1E-13 63.3 4.9 59 173-231 12-80 (96)
211 cd07690 Ig1_CD4 First immunogl 98.8 2E-08 4.2E-13 60.9 7.0 66 85-150 3-89 (94)
212 cd05751 Ig1_LILRB1_like First 98.8 1.5E-08 3.3E-13 61.4 6.3 66 164-231 2-73 (91)
213 cd05897 Ig2_IL1R2_like Second 98.8 8.4E-09 1.8E-13 62.4 4.5 57 175-231 6-75 (95)
214 PF13927 Ig_3: Immunoglobulin 98.8 1E-08 2.2E-13 59.7 4.7 67 164-231 1-74 (75)
215 PHA03376 BARF1; Provisional 98.8 2.5E-07 5.4E-12 61.7 11.1 118 83-201 20-161 (221)
216 cd05717 Ig1_Necl-1-3_like Firs 98.8 3.8E-08 8.1E-13 60.3 6.9 60 172-231 5-82 (95)
217 cd05860 Ig4_SCFR Fourth immuno 98.7 5.4E-07 1.2E-11 54.7 10.9 80 81-161 10-99 (101)
218 cd05751 Ig1_LILRB1_like First 98.7 6E-08 1.3E-12 58.8 6.7 64 84-148 11-75 (91)
219 cd05872 Ig_Sema4B_like Immunog 98.7 3.7E-08 8E-13 58.3 5.5 57 173-230 5-66 (85)
220 cd05881 Ig1_Necl-2 First (N-te 98.7 6.6E-07 1.4E-11 54.2 10.6 67 82-148 5-84 (95)
221 cd05774 Ig_CEACAM_D1 First imm 98.7 2.8E-07 6.1E-12 57.1 8.8 76 84-159 8-103 (105)
222 cd05845 Ig2_L1-CAM_like Second 98.7 7.4E-08 1.6E-12 58.2 5.4 61 171-231 10-79 (95)
223 cd05881 Ig1_Necl-2 First (N-te 98.6 2.5E-07 5.5E-12 56.0 7.5 59 173-231 6-82 (95)
224 cd05759 Ig2_KIRREL3-like Secon 98.6 4.2E-07 9.2E-12 53.9 8.2 58 92-149 2-69 (82)
225 cd05860 Ig4_SCFR Fourth immuno 98.6 2.3E-07 5E-12 56.3 7.0 60 172-231 11-85 (101)
226 cd04983 IgV_TCR_alpha_like Imm 98.6 2.3E-07 4.9E-12 58.4 7.1 62 170-231 4-90 (109)
227 smart00410 IG_like Immunoglobu 98.6 4.4E-07 9.5E-12 54.0 8.1 59 173-231 3-71 (86)
228 smart00409 IG Immunoglobulin. 98.6 4.4E-07 9.5E-12 54.0 8.1 59 173-231 3-71 (86)
229 cd05862 Ig1_VEGFR First immuno 98.6 2E-07 4.3E-12 55.8 6.4 53 179-231 1-70 (86)
230 cd05741 Ig_CEACAM_D1_like Firs 98.6 3.8E-07 8.2E-12 55.4 7.8 71 89-159 1-90 (92)
231 cd05871 Ig_Semaphorin_classIII 98.6 1.8E-07 4E-12 56.5 6.2 57 174-231 6-73 (91)
232 cd05885 Ig2_Necl-4 Second immu 98.6 1.7E-07 3.7E-12 54.7 5.7 50 182-231 2-63 (80)
233 cd05899 IgV_TCR_beta Immunoglo 98.6 3.2E-07 6.9E-12 57.8 6.6 61 170-231 4-92 (110)
234 cd05771 IgC_Tapasin_R Tapasin- 98.6 2E-06 4.4E-11 56.6 10.7 95 54-149 13-131 (139)
235 cd05711 Ig_FcalphaRI Immunoglo 98.6 4.4E-07 9.6E-12 55.3 6.9 64 165-230 2-74 (94)
236 cd05883 Ig2_Necl-2 Second immu 98.6 1.7E-06 3.7E-11 50.6 8.9 72 92-163 2-81 (82)
237 cd05759 Ig2_KIRREL3-like Secon 98.5 5.1E-07 1.1E-11 53.6 6.8 50 182-231 2-66 (82)
238 PF13927 Ig_3: Immunoglobulin 98.5 1.7E-07 3.8E-12 54.4 4.3 58 90-147 16-75 (75)
239 cd05900 Ig_Aggrecan Immunoglob 98.5 2.7E-06 5.8E-11 53.4 9.1 74 88-162 1-109 (112)
240 cd05714 Ig_CSPGs_LP Immunoglob 98.4 4.6E-06 9.9E-11 52.1 9.6 74 88-162 1-103 (106)
241 cd05896 Ig1_IL1RAPL-1_like Fir 98.4 7.9E-07 1.7E-11 54.2 5.7 58 174-231 10-90 (104)
242 cd05711 Ig_FcalphaRI Immunoglo 98.4 2.5E-06 5.5E-11 51.9 7.5 65 82-147 8-76 (94)
243 cd04983 IgV_TCR_alpha_like Imm 98.4 3.1E-06 6.8E-11 53.2 8.2 69 80-148 4-92 (109)
244 cd07698 IgC_MHC_I_alpha3 Class 98.4 3.2E-06 7E-11 51.4 7.6 65 164-231 2-80 (93)
245 cd05877 Ig_LP_like Immunoglobu 98.4 8.9E-06 1.9E-10 50.8 9.7 74 88-162 1-103 (106)
246 cd05775 Ig_SLAM-CD84_like_N N- 98.4 2.7E-06 5.9E-11 52.2 6.9 74 88-161 3-96 (97)
247 cd05879 Ig_P0 Immunoglobulin ( 98.4 1.6E-05 3.4E-10 50.3 10.5 68 82-149 6-103 (116)
248 cd05755 Ig2_ICAM-1_like Second 98.3 4.4E-06 9.5E-11 51.0 7.4 66 166-232 3-83 (100)
249 cd04980 IgV_L_kappa Immunoglob 98.3 4E-06 8.6E-11 52.4 7.5 63 169-231 5-91 (106)
250 cd07694 Ig2_CD4 Second immunog 98.3 1.4E-05 3.1E-10 46.8 9.0 63 84-148 9-73 (88)
251 cd05899 IgV_TCR_beta Immunoglo 98.3 5.3E-06 1.2E-10 52.2 8.0 68 80-148 4-94 (110)
252 cd00099 IgV Immunoglobulin var 98.3 2.2E-06 4.8E-11 53.4 6.1 57 175-231 2-87 (105)
253 cd04980 IgV_L_kappa Immunoglob 98.3 6.3E-06 1.4E-10 51.5 8.1 68 80-147 6-92 (106)
254 cd05878 Ig_Aggrecan_like Immun 98.3 1.3E-05 2.9E-10 50.3 9.5 75 88-163 1-108 (110)
255 cd05718 Ig1_PVR_like First imm 98.3 1.5E-05 3.3E-10 48.9 9.4 71 90-161 1-97 (98)
256 cd00099 IgV Immunoglobulin var 98.3 4E-06 8.6E-11 52.3 6.8 65 85-149 2-90 (105)
257 cd00098 IgC Immunoglobulin Con 98.3 2.3E-06 4.9E-11 52.3 5.5 55 177-231 11-82 (95)
258 PHA02987 Ig domain OX-2-like p 98.3 2.1E-05 4.6E-10 52.9 10.1 82 83-164 24-124 (189)
259 cd05741 Ig_CEACAM_D1_like Firs 98.3 1.9E-06 4.1E-11 52.3 4.9 53 179-231 1-77 (92)
260 cd04982 IgV_TCR_gamma Immunogl 98.3 5.7E-06 1.2E-10 52.6 7.1 61 171-231 5-97 (116)
261 cd05713 Ig_MOG_like Immunoglob 98.3 1.9E-05 4.2E-10 48.7 9.1 72 89-161 1-99 (100)
262 cd05880 Ig_EVA1 Immunoglobulin 98.2 2E-05 4.2E-10 50.0 9.0 70 81-150 5-103 (115)
263 cd05767 IgC_MHC_II_alpha Class 98.2 1.4E-05 3.1E-10 48.4 7.4 54 178-231 14-81 (94)
264 cd05879 Ig_P0 Immunoglobulin ( 98.2 1.5E-05 3.3E-10 50.4 7.7 61 171-231 5-100 (116)
265 cd05766 IgC_MHC_II_beta Class 98.2 1.9E-05 4E-10 48.0 7.7 55 177-231 12-80 (94)
266 cd07705 Ig2_Necl-1 Second immu 98.2 4E-05 8.7E-10 45.4 8.8 59 92-150 2-70 (83)
267 cd05715 Ig_P0-like Immunoglobu 98.2 5E-05 1.1E-09 48.2 9.8 70 81-150 5-104 (116)
268 cd04982 IgV_TCR_gamma Immunogl 98.2 1.4E-05 2.9E-10 50.9 7.0 68 80-147 4-98 (116)
269 cd05761 Ig2_Necl-1-4_like Seco 98.2 3.7E-05 8.1E-10 45.5 8.4 59 92-150 2-69 (82)
270 cd05901 Ig_Versican Immunoglob 98.1 5.8E-05 1.3E-09 47.4 9.4 37 125-162 78-114 (117)
271 cd05761 Ig2_Necl-1-4_like Seco 98.1 1.2E-05 2.6E-10 47.6 6.2 50 182-231 2-65 (82)
272 cd04984 IgV_L_lambda Immunoglo 98.1 2.1E-05 4.6E-10 48.3 7.5 63 85-147 2-84 (98)
273 PF07686 V-set: Immunoglobulin 98.1 5E-05 1.1E-09 47.9 9.4 62 170-231 7-99 (114)
274 cd05770 IgC_beta2m Class I maj 98.1 2.7E-05 6E-10 47.0 7.6 55 177-231 13-80 (93)
275 cd05887 Ig1_Nectin-3_like Firs 98.1 9.5E-05 2.1E-09 45.0 9.9 71 90-161 1-95 (96)
276 cd05902 Ig_Neurocan Immunoglob 98.1 3.8E-05 8.1E-10 48.0 8.3 36 126-162 72-107 (110)
277 cd05846 Ig1_MRC-OX-2_like Firs 98.1 4E-05 8.7E-10 47.0 8.4 72 89-161 1-96 (97)
278 cd05755 Ig2_ICAM-1_like Second 98.1 2.9E-05 6.3E-10 47.4 7.5 68 84-151 11-87 (100)
279 cd05774 Ig_CEACAM_D1 First imm 98.1 7.9E-06 1.7E-10 50.6 5.0 62 170-231 4-90 (105)
280 cd00098 IgC Immunoglobulin Con 98.1 1.2E-05 2.6E-10 49.1 5.8 63 88-150 12-86 (95)
281 cd05900 Ig_Aggrecan Immunoglob 98.1 1.9E-05 4.2E-10 49.5 6.6 54 178-231 1-94 (112)
282 cd07692 Ig_CD3_epsilon Immunog 98.1 1E-05 2.2E-10 44.5 4.6 49 177-230 5-53 (65)
283 cd07706 IgV_TCR_delta Immunogl 98.1 3E-05 6.5E-10 49.3 7.6 62 170-231 5-92 (116)
284 PF07686 V-set: Immunoglobulin 98.1 3.5E-05 7.5E-10 48.6 7.9 68 81-148 8-101 (114)
285 cd04984 IgV_L_lambda Immunoglo 98.1 1.2E-05 2.7E-10 49.4 5.5 57 175-231 2-83 (98)
286 PHA02987 Ig domain OX-2-like p 98.1 1.8E-05 3.9E-10 53.2 6.3 59 173-231 24-105 (189)
287 cd05772 IgC_SIRP Signal-regula 98.0 9.3E-05 2E-09 46.4 9.0 64 85-149 17-92 (111)
288 cd05884 Ig2_Necl-3 Second immu 98.0 3.4E-05 7.3E-10 45.7 6.7 50 182-231 2-66 (83)
289 cd05775 Ig_SLAM-CD84_like_N N- 98.0 1.1E-05 2.4E-10 49.4 4.7 54 178-231 3-81 (97)
290 cd05884 Ig2_Necl-3 Second immu 98.0 9.9E-05 2.2E-09 43.7 8.4 58 92-149 2-69 (83)
291 cd05772 IgC_SIRP Signal-regula 98.0 2.8E-05 6E-10 48.7 6.3 32 175-206 17-50 (111)
292 cd07705 Ig2_Necl-1 Second immu 98.0 3.5E-05 7.6E-10 45.7 6.4 50 182-231 2-66 (83)
293 cd05880 Ig_EVA1 Immunoglobulin 98.0 5.6E-05 1.2E-09 47.9 7.6 61 171-231 5-99 (115)
294 cd05714 Ig_CSPGs_LP Immunoglob 98.0 3E-05 6.6E-10 48.4 6.3 54 178-231 1-88 (106)
295 cd07700 IgV_CD8_beta Immunoglo 98.0 2.9E-05 6.2E-10 48.6 6.0 56 175-230 2-91 (107)
296 cd05878 Ig_Aggrecan_like Immun 98.0 3.4E-05 7.3E-10 48.5 6.1 54 178-231 1-92 (110)
297 cd07699 IgC_L Immunoglobulin C 98.0 2.4E-05 5.3E-10 48.2 5.3 67 165-231 2-86 (100)
298 cd05716 Ig_pIgR Immunoglobulin 98.0 2.7E-05 5.8E-10 47.9 5.5 57 175-231 3-84 (98)
299 cd05888 Ig1_Nectin-4_like Frst 98.0 9.8E-05 2.1E-09 45.5 7.9 36 125-161 63-99 (100)
300 cd05886 Ig1_Nectin-1_like Firs 98.0 0.00037 8E-09 42.7 10.3 36 125-161 62-98 (99)
301 cd05718 Ig1_PVR_like First imm 98.0 3.1E-05 6.7E-10 47.6 5.7 52 180-231 1-82 (98)
302 cd07694 Ig2_CD4 Second immunog 97.9 4.2E-05 9.1E-10 44.9 5.6 58 174-231 9-71 (88)
303 cd00096 Ig Immunoglobulin doma 97.9 4E-05 8.7E-10 43.3 5.8 50 182-231 1-63 (74)
304 cd05715 Ig_P0-like Immunoglobu 97.9 6.3E-05 1.4E-09 47.8 7.0 61 171-231 5-100 (116)
305 cd05716 Ig_pIgR Immunoglobulin 97.9 0.00015 3.3E-09 44.5 8.3 64 85-148 3-86 (98)
306 cd05713 Ig_MOG_like Immunoglob 97.9 5E-05 1.1E-09 46.8 5.9 22 210-231 64-85 (100)
307 cd07697 IgC_TCR_gamma T cell r 97.9 6.8E-05 1.5E-09 45.6 5.9 57 175-231 12-82 (96)
308 cd05877 Ig_LP_like Immunoglobu 97.9 9E-05 2E-09 46.2 6.7 54 178-231 1-88 (106)
309 cd05846 Ig1_MRC-OX-2_like Firs 97.8 4.8E-05 1E-09 46.6 5.0 53 179-231 1-81 (97)
310 cd00096 Ig Immunoglobulin doma 97.8 0.00013 2.9E-09 41.1 6.7 58 92-149 1-66 (74)
311 cd07706 IgV_TCR_delta Immunogl 97.8 0.00012 2.7E-09 46.4 7.0 68 80-147 5-93 (116)
312 smart00407 IGc1 Immunoglobulin 97.8 0.00012 2.7E-09 42.4 6.3 50 182-231 2-68 (75)
313 cd07700 IgV_CD8_beta Immunoglo 97.8 0.00016 3.4E-09 45.2 7.2 63 85-147 2-93 (107)
314 cd05883 Ig2_Necl-2 Second immu 97.8 0.00012 2.7E-09 42.9 6.1 50 182-231 2-64 (82)
315 cd07699 IgC_L Immunoglobulin C 97.8 0.00011 2.4E-09 45.3 6.1 64 86-149 14-89 (100)
316 PF07654 C1-set: Immunoglobuli 97.8 0.00014 2.9E-09 43.2 6.3 54 178-231 7-74 (83)
317 cd05847 IgC_CH2_IgE CH2 domain 97.8 0.00011 2.5E-09 44.5 5.8 54 178-231 13-83 (94)
318 cd05768 IgC_CH4 CH4 domain (fo 97.8 0.00013 2.9E-09 45.0 6.0 30 177-206 14-45 (102)
319 cd05889 Ig1_DNAM-1_like First 97.8 0.0014 3.1E-08 39.8 10.4 27 125-151 59-86 (96)
320 PF08205 C2-set_2: CD80-like C 97.7 0.00038 8.3E-09 41.8 7.8 53 179-231 14-81 (89)
321 smart00407 IGc1 Immunoglobulin 97.7 0.0004 8.8E-09 40.2 7.5 58 92-149 2-71 (75)
322 cd05720 Ig_CD8_alpha Immunoglo 97.7 0.00011 2.4E-09 45.6 5.3 56 176-231 3-89 (104)
323 cd07696 IgC_CH3 CH3 domain (th 97.7 0.00019 4.1E-09 43.7 5.9 57 175-231 10-83 (96)
324 PF08205 C2-set_2: CD80-like C 97.7 0.00027 5.9E-09 42.5 6.4 62 89-150 14-85 (89)
325 PHA03376 BARF1; Provisional 97.7 0.00019 4.2E-09 48.3 5.9 57 174-230 21-106 (221)
326 cd05768 IgC_CH4 CH4 domain (fo 97.7 0.00023 4.9E-09 44.0 5.9 62 88-149 15-91 (102)
327 cd05712 Ig_Siglec_N Immunoglob 97.7 0.00035 7.5E-09 44.6 7.0 61 171-231 6-100 (119)
328 cd05712 Ig_Siglec_N Immunoglob 97.6 0.00076 1.6E-08 43.0 8.5 68 81-148 6-102 (119)
329 cd04981 IgV_H Immunoglobulin ( 97.6 0.0003 6.6E-09 44.7 6.3 61 171-231 4-96 (117)
330 cd05769 IgC_TCR_beta T cell re 97.6 0.00034 7.5E-09 44.1 6.3 31 176-206 15-47 (115)
331 cd04985 IgC_CH1 CH1 domain (fi 97.6 0.00038 8.3E-09 42.3 6.3 27 178-204 15-43 (95)
332 cd05902 Ig_Neurocan Immunoglob 97.6 0.00035 7.6E-09 43.7 6.0 23 209-231 70-92 (110)
333 cd05889 Ig1_DNAM-1_like First 97.6 0.00039 8.5E-09 42.3 6.0 22 210-231 59-80 (96)
334 cd07691 Ig_CD3_gamma_delta Imm 97.5 0.00035 7.6E-09 38.9 4.6 49 178-231 5-53 (69)
335 cd07698 IgC_MHC_I_alpha3 Class 97.5 0.0016 3.4E-08 39.5 8.0 62 89-150 14-84 (93)
336 smart00406 IGv Immunoglobulin 97.5 0.00032 7E-09 41.1 4.9 23 208-230 59-81 (81)
337 cd05720 Ig_CD8_alpha Immunoglo 97.5 0.00055 1.2E-08 42.5 5.9 62 86-147 3-90 (104)
338 cd05888 Ig1_Nectin-4_like Frst 97.4 0.00053 1.2E-08 42.2 5.6 22 210-231 63-84 (100)
339 cd04981 IgV_H Immunoglobulin ( 97.4 0.0014 2.9E-08 41.7 7.3 67 81-147 4-97 (117)
340 cd07691 Ig_CD3_gamma_delta Imm 97.4 0.0015 3.2E-08 36.4 6.3 49 89-147 6-54 (69)
341 cd05847 IgC_CH2_IgE CH2 domain 97.4 0.0012 2.5E-08 40.1 6.4 63 88-150 13-87 (94)
342 cd05887 Ig1_Nectin-3_like Firs 97.4 0.0014 3.1E-08 39.9 6.7 22 210-231 59-80 (96)
343 cd04986 IgC_CH2 CH2 domain (se 97.4 0.0012 2.5E-08 40.3 6.3 40 165-204 4-47 (99)
344 cd05769 IgC_TCR_beta T cell re 97.4 0.0012 2.6E-08 41.6 6.5 63 88-150 17-93 (115)
345 cd07696 IgC_CH3 CH3 domain (th 97.3 0.00088 1.9E-08 40.8 5.5 64 86-149 11-86 (96)
346 cd05901 Ig_Versican Immunoglob 97.3 0.0022 4.7E-08 40.4 7.0 23 209-231 77-99 (117)
347 cd05766 IgC_MHC_II_beta Class 97.3 0.0032 6.9E-08 38.2 7.5 59 88-149 13-83 (94)
348 cd07704 Ig2_Nectin-3-4_like Se 97.3 0.0045 9.8E-08 37.6 7.9 68 82-149 9-84 (97)
349 KOG1480|consensus 97.2 0.00047 1E-08 56.1 4.4 151 11-162 23-219 (909)
350 PHA02982 hypothetical protein; 97.2 0.014 3E-07 40.2 10.1 115 85-204 35-173 (251)
351 cd07692 Ig_CD3_epsilon Immunog 97.1 0.0027 5.9E-08 35.1 5.5 51 87-147 5-55 (65)
352 cd05886 Ig1_Nectin-1_like Firs 97.1 0.0023 5.1E-08 39.2 5.8 22 210-231 62-83 (99)
353 PF07654 C1-set: Immunoglobuli 97.1 0.0044 9.6E-08 36.6 6.9 60 88-150 7-78 (83)
354 smart00406 IGv Immunoglobulin 97.0 0.0018 3.9E-08 37.9 4.8 20 126-145 62-81 (81)
355 cd04986 IgC_CH2 CH2 domain (se 97.0 0.0029 6.3E-08 38.6 5.6 64 86-149 16-89 (99)
356 cd07697 IgC_TCR_gamma T cell r 97.0 0.0076 1.6E-07 36.7 7.3 60 88-149 15-85 (96)
357 PHA03269 envelope glycoprotein 97.0 0.013 2.8E-07 45.6 9.9 78 127-206 290-372 (566)
358 cd05721 IgV_CTLA-4 Immunoglobu 97.0 0.0044 9.5E-08 38.7 6.0 59 173-231 7-94 (115)
359 cd05719 Ig2_PVR_like Second im 96.9 0.014 3E-07 35.5 8.0 61 89-149 15-82 (95)
360 cd04985 IgC_CH1 CH1 domain (fi 96.9 0.007 1.5E-07 36.8 6.7 61 88-149 15-87 (95)
361 cd05767 IgC_MHC_II_alpha Class 96.9 0.0081 1.8E-07 36.4 6.8 58 89-149 15-84 (94)
362 cd05770 IgC_beta2m Class I maj 96.9 0.0078 1.7E-07 36.4 6.7 61 88-149 14-83 (93)
363 PHA03270 envelope glycoprotein 96.8 0.12 2.6E-06 39.9 13.5 110 85-202 230-358 (466)
364 PHA03270 envelope glycoprotein 96.7 0.025 5.3E-07 43.5 9.4 79 126-206 182-264 (466)
365 TIGR00864 PCC polycystin catio 96.7 0.59 1.3E-05 44.9 19.4 181 20-204 1874-2084(2740)
366 cd07689 Ig2_VCAM-1 Second immu 96.7 0.0094 2E-07 36.1 5.6 56 176-232 12-84 (99)
367 cd07703 Ig2_Nectin-2_like Seco 96.6 0.014 3.1E-07 35.4 6.4 60 90-149 16-82 (95)
368 PHA03273 envelope glycoprotein 96.6 0.22 4.7E-06 38.9 13.7 111 84-202 245-376 (486)
369 PHA03269 envelope glycoprotein 96.5 0.12 2.6E-06 40.6 11.9 126 66-202 322-468 (566)
370 PHA02633 hypothetical protein; 96.4 0.018 3.8E-07 31.4 5.1 38 124-162 16-53 (63)
371 cd05721 IgV_CTLA-4 Immunoglobu 96.3 0.027 5.8E-07 35.3 6.3 65 82-146 6-94 (115)
372 PHA03273 envelope glycoprotein 96.2 0.044 9.6E-07 42.5 8.2 78 127-206 199-280 (486)
373 PHA03271 envelope glycoprotein 96.1 0.45 9.8E-06 36.7 14.6 110 85-202 256-384 (490)
374 cd07704 Ig2_Nectin-3-4_like Se 96.1 0.013 2.9E-07 35.6 4.1 39 15-53 3-43 (97)
375 cd05719 Ig2_PVR_like Second im 96.1 0.016 3.4E-07 35.3 4.4 23 179-201 15-38 (95)
376 KOG1480|consensus 96.1 0.00092 2E-08 54.5 -1.3 62 170-231 135-203 (909)
377 PF08204 V-set_CD47: CD47 immu 95.9 0.016 3.4E-07 37.2 4.0 52 179-231 27-105 (130)
378 cd07703 Ig2_Nectin-2_like Seco 95.9 0.044 9.5E-07 33.3 5.8 22 180-201 16-38 (95)
379 cd07689 Ig2_VCAM-1 Second immu 95.8 0.075 1.6E-06 32.3 6.4 60 86-147 12-84 (99)
380 PHA03042 CD47-like protein; Pr 95.7 0.083 1.8E-06 38.1 7.2 60 89-151 31-95 (286)
381 PHA03042 CD47-like protein; Pr 95.6 0.046 1E-06 39.4 5.8 52 179-231 31-90 (286)
382 PF08204 V-set_CD47: CD47 immu 95.6 0.0083 1.8E-07 38.4 1.9 71 88-160 26-118 (130)
383 PHA02914 Immunoglobulin-like d 95.6 0.52 1.1E-05 36.2 11.2 117 84-206 274-422 (500)
384 PHA03271 envelope glycoprotein 94.8 0.21 4.6E-06 38.4 7.4 79 126-206 207-290 (490)
385 PHA02865 MHC-like TNF binding 94.6 0.14 3E-06 38.6 6.0 35 163-201 202-238 (338)
386 PF11465 Receptor_2B4: Natural 94.5 0.49 1.1E-05 29.1 7.1 38 124-161 69-106 (108)
387 TIGR00864 PCC polycystin catio 94.3 5.8 0.00013 38.9 20.2 171 21-202 1705-1905(2740)
388 PF07354 Sp38: Zona-pellucida- 94.0 0.13 2.9E-06 37.0 4.6 48 102-149 11-60 (271)
389 PHA02633 hypothetical protein; 94.0 0.071 1.5E-06 29.1 2.5 22 209-230 16-37 (63)
390 PF02124 Marek_A: Marek's dise 93.2 2.1 4.5E-05 30.2 13.7 118 105-230 8-157 (211)
391 PHA03052 Hypothetical protein; 91.2 0.86 1.9E-05 25.4 4.4 35 172-206 5-42 (69)
392 PF06328 Lep_receptor_Ig: Ig-l 89.0 3.4 7.4E-05 24.8 7.5 66 81-146 10-82 (89)
393 PF05790 C2-set: Immunoglobuli 88.7 3.3 7.2E-05 24.2 8.7 38 104-147 27-64 (80)
394 PHA03052 Hypothetical protein; 88.1 1.7 3.7E-05 24.2 4.0 33 20-52 4-39 (69)
395 PHA02865 MHC-like TNF binding 87.7 2 4.4E-05 32.7 5.6 21 91-111 216-238 (338)
396 KOG4597|consensus 87.1 1.4 3E-05 34.8 4.6 70 82-151 204-282 (560)
397 PF03921 ICAM_N: Intercellular 86.5 5.2 0.00011 24.1 7.1 79 80-165 9-89 (91)
398 PF05790 C2-set: Immunoglobuli 85.0 4.7 0.0001 23.6 5.1 37 193-230 26-62 (80)
399 KOG4597|consensus 84.0 1.2 2.6E-05 35.2 2.9 61 171-231 203-277 (560)
400 PHA02982 hypothetical protein; 78.3 4.6 9.9E-05 28.4 3.9 57 175-231 35-120 (251)
401 PF06328 Lep_receptor_Ig: Ig-l 78.0 12 0.00027 22.4 7.4 37 171-207 10-51 (89)
402 PF11465 Receptor_2B4: Natural 77.7 14 0.00031 22.9 5.6 23 209-231 69-91 (108)
403 PF00801 PKD: PKD domain; Int 76.3 9.4 0.0002 21.3 4.4 52 175-231 7-59 (69)
404 cd05890 Ig2_Nectin-1_like Seco 75.1 9.2 0.0002 23.2 4.1 58 92-149 23-87 (98)
405 KOG1026|consensus 70.4 7.8 0.00017 33.2 4.2 32 84-115 202-233 (774)
406 KOG0613|consensus 68.8 13 0.00027 33.7 5.2 58 173-230 343-412 (1205)
407 KOG0613|consensus 66.8 11 0.00023 34.1 4.4 143 84-226 344-508 (1205)
408 PF06832 BiPBP_C: Penicillin-B 65.7 26 0.00056 20.8 7.8 25 181-206 31-55 (89)
409 PHA02914 Immunoglobulin-like d 64.9 69 0.0015 25.4 10.8 40 127-168 82-121 (500)
410 PF03921 ICAM_N: Intercellular 64.7 22 0.00047 21.5 4.2 20 20-39 10-29 (91)
411 PF11049 KSHV_K1: Glycoprotein 64.3 13 0.00029 20.7 2.9 22 183-206 2-23 (71)
412 PHA03189 UL14 tegument protein 61.6 25 0.00054 26.5 4.8 13 218-230 140-152 (348)
413 PRK14081 triple tyrosine motif 60.5 1.1E+02 0.0024 26.3 20.5 197 24-230 301-550 (667)
414 PF15096 G6B: G6B family 53.8 35 0.00076 23.6 4.2 22 176-198 8-29 (224)
415 PHA03189 UL14 tegument protein 52.8 1E+02 0.0022 23.5 8.8 26 132-157 139-164 (348)
416 PHA03286 envelope glycoprotein 48.1 1.5E+02 0.0032 24.1 8.6 76 125-200 126-225 (492)
417 PHA02935 Hypothetical protein; 46.0 1E+02 0.0022 21.6 6.8 85 105-191 68-167 (349)
418 KOG0200|consensus 44.7 1.1E+02 0.0024 26.1 6.7 98 125-230 12-136 (609)
419 PHA03283 envelope glycoprotein 43.1 1.9E+02 0.0042 24.0 8.7 38 125-163 133-170 (542)
420 PHA03240 envelope glycoprotein 42.0 66 0.0014 22.9 4.2 21 124-144 103-123 (258)
421 PF05955 Herpes_gp2: Equine he 41.1 1.2E+02 0.0026 21.0 10.4 50 183-232 111-177 (226)
422 PF02480 Herpes_gE: Alphaherpe 41.0 35 0.00076 27.5 3.2 38 125-162 88-125 (439)
423 PF01688 Herpes_gI: Alphaherpe 39.9 34 0.00074 23.2 2.5 28 205-232 118-145 (161)
424 PHA03112 IL-18 binding protein 38.7 52 0.0011 21.7 3.2 29 23-51 33-63 (141)
425 PHA03282 envelope glycoprotein 35.2 1.4E+02 0.0029 24.4 5.4 43 120-162 118-161 (540)
426 PF07732 Cu-oxidase_3: Multico 32.4 70 0.0015 20.3 3.0 29 20-48 25-53 (117)
427 smart00089 PKD Repeats in poly 27.0 1.3E+02 0.0028 17.0 4.8 26 178-203 13-39 (79)
428 cd00602 IPT_TF IPT domain of e 22.6 2E+02 0.0044 17.8 4.1 33 20-52 8-40 (101)
429 PF02440 Adeno_E3_CR1: Adenovi 21.7 1.5E+02 0.0033 16.5 2.7 21 25-49 2-22 (63)
430 PF10989 DUF2808: Protein of u 20.8 2.3E+02 0.005 18.8 4.0 38 195-232 81-127 (146)
431 PF02124 Marek_A: Marek's dise 20.8 3.3E+02 0.0072 19.6 11.2 91 44-148 58-160 (211)
No 1
>KOG3513|consensus
Probab=100.00 E-value=4e-31 Score=212.70 Aligned_cols=220 Identities=29% Similarity=0.514 Sum_probs=185.1
Q ss_pred cCCCeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCcE------------------------eeeeEEEEeeee-
Q psy15206 10 DTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFK------------------------RLGRLHLAIPYT- 64 (232)
Q Consensus 10 ~~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~------------------------~~~~~~~~~~~~- 64 (232)
..+|+|....+.......|+.|.|.|-+.|+|-|+|.|.|.+. +.|.|.|.....
T Consensus 238 ~~~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~~~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~ 317 (1051)
T KOG3513|consen 238 EYAPKILVPFPETETALKGQSVKLECFALGNPTPQIKWRKVDGKPPPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSR 317 (1051)
T ss_pred ccCCccccCCCCcccccCCCeEEEEEEecCCCCCcEEEEeCCCCCCCcceeeeccccEEEecccCcCCCeEEEEEEeccc
Confidence 4588888875668889999999999999999999999999432 225677766333
Q ss_pred -----cCceeecCCcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCc---EEeeCCeEEECCCCCC
Q psy15206 65 -----SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQ---TIFTGSTLQIPRITKE 136 (232)
Q Consensus 65 -----~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~---~~~~~~~l~i~~~~~~ 136 (232)
...+.+..+|..+. .+....+..|+.+.+.|.+.|.|.|.+.|++||.++....+ .....+.|.|.+++..
T Consensus 318 G~~~~~~~v~v~a~P~w~~-~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~ 396 (1051)
T KOG3513|consen 318 GSATHSGHVTVYAPPYWLQ-KPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQES 396 (1051)
T ss_pred ccceeeEEEEEecCchhhc-ccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEeCCEEEEEecccc
Confidence 67788888888876 67778888999999999999999999999999999876655 7778899999999999
Q ss_pred CCeEEEEEeEeCCCCceeeEEEEEEEec-cEEEecccee--eeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCeEE-
Q psy15206 137 DRGAYYCVAQNGIGRGARRKIEVKVEFA-PIVTVQSTRI--GQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHS- 212 (232)
Q Consensus 137 ~~g~y~C~~~~~~~~~~~~~~~l~v~~~-p~~~~~~~~~--~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~~~- 212 (232)
|+|.|.|.++|..|. ....+.|.|... |.+...+... .+..|..+.+.|...+.|.+.+.|.|++..+.+++++.
T Consensus 397 dsg~YQC~A~Nk~G~-i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i 475 (1051)
T KOG3513|consen 397 DSGVYQCIAENKYGT-IYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRI 475 (1051)
T ss_pred cCeEEEeeeecccce-EeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEE
Confidence 999999999999988 667888988864 7777666544 56679999999999999999999999988666666654
Q ss_pred -----EEEeccccCCceEEEEecC
Q psy15206 213 -----ISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 213 -----~~~~~~~~~d~g~Y~C~~~ 231 (232)
|.+.+++.+|+|.|+|.|.
T Consensus 476 ~edGtL~I~n~t~~DaG~YtC~A~ 499 (1051)
T KOG3513|consen 476 LEDGTLEISNVTRSDAGKYTCVAE 499 (1051)
T ss_pred CCCCcEEecccCcccCcEEEEEEE
Confidence 4666788899999999874
No 2
>KOG3513|consensus
Probab=99.97 E-value=1.2e-29 Score=204.42 Aligned_cols=223 Identities=27% Similarity=0.485 Sum_probs=181.3
Q ss_pred CcccCCCeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCcEee--------------------------eeEEEE
Q psy15206 7 SQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL--------------------------GRLHLA 60 (232)
Q Consensus 7 ~~~~~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~~--------------------------~~~~~~ 60 (232)
+.+.++|.++.. +.+..+..|++++|.|.+.|.|.+.|+|++++.++ |.|+|.
T Consensus 326 v~v~a~P~w~~~-~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~ 404 (1051)
T KOG3513|consen 326 VTVYAPPYWLQK-PQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCI 404 (1051)
T ss_pred EEEecCchhhcc-cceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEeCCEEEEEecccccCeEEEee
Confidence 467889999988 99999999999999999999999999999976443 345554
Q ss_pred e------eeecCceeecCC-cEEecCC-CCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEe-eCCeEEEC
Q psy15206 61 I------PYTSPEAQVDTP-PVILNNS-PQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF-TGSTLQIP 131 (232)
Q Consensus 61 ~------~~~~~~l~v~~~-p~~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~-~~~~l~i~ 131 (232)
. .|..+.|.|... |.+.... .....+..|..+.+.|...+.|.+.++|.+.++.+...+++.. .+++|.|.
T Consensus 405 A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edGtL~I~ 484 (1051)
T KOG3513|consen 405 AENKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILEDGTLEIS 484 (1051)
T ss_pred eecccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEECCCCcEEec
Confidence 4 333778888765 4443322 2223566799999999999999999999999886555666555 68899999
Q ss_pred CCCCCCCeEEEEEeEeCCCCceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecCCCC--eEEEeeCCEEecC--
Q psy15206 132 RITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHP--ILYWAKDGEIVVN-- 207 (232)
Q Consensus 132 ~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~~-- 207 (232)
+++.+|.|.|+|.++|..|. ......|.|..++.+...|....+..|+.++|.|.+...+.. .|.|.+||..+..
T Consensus 485 n~t~~DaG~YtC~A~N~~G~-a~~~~~L~Vkd~tri~~~P~~~~v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~ 563 (1051)
T KOG3513|consen 485 NVTRSDAGKYTCVAENKLGK-AESTGNLIVKDATRITLAPSNTDVKVGESVTLTCEASHDPSLDITFTWKKNGRPIDFNP 563 (1051)
T ss_pred ccCcccCcEEEEEEEcccCc-cceEEEEEEecCceEEeccchhhhccCceEEEEeecccCCCcceEEEEEECCEEhhccC
Confidence 99999999999999999998 678889999999999999999999999999999999766544 5999999986541
Q ss_pred ----------CCeEEEEEeccccCCceEEEEecC
Q psy15206 208 ----------DEYHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 208 ----------~~~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
.+.-.+.+.++.+.|+|.|.|.|.
T Consensus 564 ~~~~~~~~~~~~~g~L~i~nv~l~~~G~Y~C~aq 597 (1051)
T KOG3513|consen 564 DGDHFEINDGSDSGRLTIANVSLEDSGKYTCVAQ 597 (1051)
T ss_pred CCCceEEeCCcCccceEEEeeccccCceEEEEEE
Confidence 111347778889999999999873
No 3
>KOG4194|consensus
Probab=99.97 E-value=9.4e-30 Score=192.87 Aligned_cols=217 Identities=24% Similarity=0.457 Sum_probs=179.9
Q ss_pred CCeeecCCCcceEeecCCeEEEEEEecC--CCCCeEEEEeCc--------------------------------------
Q psy15206 12 PPVILNNSTQLSVAKEGQSVQLECHAEG--HPIPTISWRRNF-------------------------------------- 51 (232)
Q Consensus 12 ~P~i~~~~~~~~~~~~G~~v~l~C~~~~--~p~~~~~W~~~~-------------------------------------- 51 (232)
+|.|... |..+.+..|+.++|+|.+.+ ..+.++.|.++.
T Consensus 503 kpqI~~q-Pe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nV 581 (873)
T KOG4194|consen 503 KPQIVTQ-PETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNV 581 (873)
T ss_pred CcceecC-chHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeee
Confidence 7888888 89999999999999999987 457799999921
Q ss_pred --EeeeeEEEEe------eee-cCceeecCCcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCC---
Q psy15206 52 --KRLGRLHLAI------PYT-SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNG--- 119 (232)
Q Consensus 52 --~~~~~~~~~~------~~~-~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~--- 119 (232)
...|+|+|.+ +|. .++|+|...|.+.. .|...++..|+.+.|.|.+.|.|.|.|.|.++|+.-++..
T Consensus 582 t~td~grYQCVvtN~FGStysqk~KltV~~~PsFtk-tP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eR 660 (873)
T KOG4194|consen 582 TFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTK-TPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARER 660 (873)
T ss_pred ecccCceEEEEEecccCcchhheeEEEeeccCcccc-CcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhh
Confidence 1225888876 332 88899998888875 6888899999999999999999999999999987733322
Q ss_pred cE--EeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecCCC-CeE
Q psy15206 120 QT--IFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPH-PIL 196 (232)
Q Consensus 120 ~~--~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~~ 196 (232)
+. ...+..+.|.++..+|.|.|+|.+.|..|. .+...++.|...|.+...-.+..+..|+.+.|.|.+.+.|. |..
T Consensus 661 Rl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~-isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~a~pr~ 739 (873)
T KOG4194|consen 661 RLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQ-ISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGAPADPRL 739 (873)
T ss_pred eeeecCCCCEEEEecccccccceeEEeeeccccc-eeeceEEEEecCCcccccccceEEEecceEEEEEecCCCCCCccc
Confidence 22 123568999999999999999999999888 77889999999998888777888999999999999999887 899
Q ss_pred EEeeCCEEec-------CCCeEEEEEeccccCCceEEEEecC
Q psy15206 197 YWAKDGEIVV-------NDEYHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 197 ~W~~~g~~~~-------~~~~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
.|+|+++.+. ..+...+...+...+|+|.|+|.++
T Consensus 740 ~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~ 781 (873)
T KOG4194|consen 740 EWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGIYTCEMS 781 (873)
T ss_pred cccCCCCceEEeecccCCCCCeEEEEEehhhhhcceEEEEEE
Confidence 9999987654 3345566666777899999999975
No 4
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.93 E-value=6.2e-24 Score=158.27 Aligned_cols=207 Identities=17% Similarity=0.269 Sum_probs=141.4
Q ss_pred cceEeecCCeEEEEEEe-----cCCCCCeEEEEeCcEe----------------------eeeEEEEeeee------cCc
Q psy15206 21 QLSVAKEGQSVQLECHA-----EGHPIPTISWRRNFKR----------------------LGRLHLAIPYT------SPE 67 (232)
Q Consensus 21 ~~~~~~~G~~v~l~C~~-----~~~p~~~~~W~~~~~~----------------------~~~~~~~~~~~------~~~ 67 (232)
....+.+|+.+.|.|.+ .+.|.+.+.|+|++.. .|.|+|..... .+.
T Consensus 34 ~~~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~ 113 (326)
T PHA02785 34 ASFMELENEPVILPCPQINTLSSGYNILDILWEKRGADNDRIIPIDNGSNMLILNPTQSDSGIYICITKNETYCDMMSLN 113 (326)
T ss_pred chhhhhcCCCEEEECCCccccccCCCCceEEEEECCCccceEEEccCCceEEEcccCcccCeEEEEEEECCCcceEEEEE
Confidence 34567789999999997 5788899999996432 14566665322 344
Q ss_pred eeecCC--cEEecCCCCceEeecCCcEEEEeee-----ccCCCCeEEEEeCCeeeCCCCcEE-eeCCeEEECCCCCCCCe
Q psy15206 68 AQVDTP--PVILNNSPQLSVAKEGQSVQLECHA-----EGHPIPTISWRRENNAILPNGQTI-FTGSTLQIPRITKEDRG 139 (232)
Q Consensus 68 l~v~~~--p~~~~~~~~~~~~~~g~~~~l~C~~-----~~~~~~~~~W~~~~~~~~~~~~~~-~~~~~l~i~~~~~~~~g 139 (232)
|+|... +.+. .......+.+|+.+.+.|.. .+.+.+.++|+++. .+ ...+.. ..++.|.|.++..+|.|
T Consensus 114 L~V~~~~~~~~~-~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~-~~-~~~r~~~~~~~~L~i~~v~~~d~G 190 (326)
T PHA02785 114 LTIVSVSESNID-LISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHR-RL-RNKRLKQRTPGIITIEDVRKNDAG 190 (326)
T ss_pred EEEEecCCCccc-eeeccceecccCcEEEECCChhhcccCCCCceEEEccCC-cc-CCcceEecCCCeEEEeecChhhCe
Confidence 455322 1111 11222345678899999972 35678899998754 22 222322 23568999999999999
Q ss_pred EEEEEeEeCCCCce---eeEEEEEEEe---ccEEEeccceeeeeccCeEEEEEEeecCCCC---eEEEeeCCEEecCCC-
Q psy15206 140 AYYCVAQNGIGRGA---RRKIEVKVEF---APIVTVQSTRIGQALHHDMDLDCHIEAYPHP---ILYWAKDGEIVVNDE- 209 (232)
Q Consensus 140 ~y~C~~~~~~~~~~---~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~---~~~W~~~g~~~~~~~- 209 (232)
.|+|.+.+..+... ...+.+.|.. +|. ...|....+..|+.+.|.|.+.|.|.+ .+.|++||..+....
T Consensus 191 ~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~-~~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~ 269 (326)
T PHA02785 191 YYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPT-MQLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDE 269 (326)
T ss_pred EEEEEEEeccCCEEEeEEEEEEEEEeccCCCce-ecCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCC
Confidence 99999999766522 2233444542 333 344566677789999999999998874 799999998764210
Q ss_pred ---------------------eEEEEEeccccCCceEEEEecC
Q psy15206 210 ---------------------YHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 210 ---------------------~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
...|.+.++..+|.|+|+|.|.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~ 312 (326)
T PHA02785 270 DGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAF 312 (326)
T ss_pred CCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEE
Confidence 1357777888999999999874
No 5
>KOG4221|consensus
Probab=99.93 E-value=2.7e-24 Score=173.95 Aligned_cols=221 Identities=26% Similarity=0.475 Sum_probs=172.4
Q ss_pred ccCCCeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCcEee------------------------eeEEEEeee-
Q psy15206 9 VDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL------------------------GRLHLAIPY- 63 (232)
Q Consensus 9 ~~~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~~------------------------~~~~~~~~~- 63 (232)
+...|.+... +.+..+..|+++.|.|.+.+.+.+.+.|.++...+ |.|+|.++-
T Consensus 137 ~a~~~~f~~~-~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g 215 (1381)
T KOG4221|consen 137 LAGLADFALQ-PESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLDSRVIVLPSGALEISGLQPSDTGEYRCVVTGG 215 (1381)
T ss_pred ecccCccccC-ccceeEecCCcEEEEEEEcCccCceeEEecccccccCCCcEEEcCCCcEEecccccCCCceEEEEEecC
Confidence 3446667766 88999999999999999999888899999954422 356665522
Q ss_pred ------ecCceeecCCcE-----EecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCc-EE-eeCCeEEE
Q psy15206 64 ------TSPEAQVDTPPV-----ILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQ-TI-FTGSTLQI 130 (232)
Q Consensus 64 ------~~~~l~v~~~p~-----~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~-~~-~~~~~l~i 130 (232)
....|++...+. .+...+...++..|+.+.|.|.+.+.+.|.+.|.+++..+..+.. .. ...+.|.|
T Consensus 216 ~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~slli 295 (1381)
T KOG4221|consen 216 ASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVLVGGSSLLI 295 (1381)
T ss_pred CcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEEEEecccceEE
Confidence 155566652221 123357778888999999999999999999999999988865542 22 23568999
Q ss_pred CCCCCCCCeEEEEEeEeCCCCceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCe
Q psy15206 131 PRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEY 210 (232)
Q Consensus 131 ~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~ 210 (232)
.+++..|+|.|+|.+.|.... .....++.|..+|.+...|..+...++.++.+.|.+.|.|.+.+.|+|||..+..++.
T Consensus 296 S~a~~~dSg~YtC~Atn~~D~-idasaev~V~a~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy 374 (1381)
T KOG4221|consen 296 SNATDDDSGKYTCRATNTNDS-IDASAEVTVLAPPGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDY 374 (1381)
T ss_pred eccccccCceEEEEecCCCcc-cccceEEEEEcCCCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEecCcccCcccc
Confidence 999999999999999985443 4456788999999999999999999999999999999999999999999987765554
Q ss_pred EEEE------EeccccCCceEEEEecC
Q psy15206 211 HSIS------NFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 211 ~~~~------~~~~~~~d~g~Y~C~~~ 231 (232)
+++. +...-..|.|.|+|.+.
T Consensus 375 ~ki~~~~~lrIlgi~~sdeg~yQcvae 401 (1381)
T KOG4221|consen 375 FKIVGGGNLRILGIVKSDEGFYQCVAE 401 (1381)
T ss_pred eEecCCCCcEEEEEecccchhhhhhhc
Confidence 4433 33445589999999864
No 6
>KOG4221|consensus
Probab=99.92 E-value=1.4e-22 Score=164.16 Aligned_cols=216 Identities=22% Similarity=0.434 Sum_probs=160.5
Q ss_pred CCeeecCCCcceEeecCCeEEEEEEecCC--CCCeEEEEeCcEee-------------------------------eeEE
Q psy15206 12 PPVILNNSTQLSVAKEGQSVQLECHAEGH--PIPTISWRRNFKRL-------------------------------GRLH 58 (232)
Q Consensus 12 ~P~i~~~~~~~~~~~~G~~v~l~C~~~~~--p~~~~~W~~~~~~~-------------------------------~~~~ 58 (232)
+=.|.++ |.+ +.+|..+.|.|..... +.+.|.|.+++..+ |.|+
T Consensus 41 ~~~f~~e-p~d--~~~~~svlLecs~~~~~~~~~~i~wkkDg~~l~e~~d~~~~~LsNgSl~i~~v~~~kh~~~~eg~Yq 117 (1381)
T KOG4221|consen 41 PLQFLLE-PSD--AMEGSSVLLECSAYAAGGTSVKIEWKKDGSQLNEVYDDRRQLLSNGSLYISSVLASKHNKVDEGVYQ 117 (1381)
T ss_pred cceEEec-ccc--cccccceEEeccccccCCCCeeEEEccCchhhhhhhhhHHhhccCCceeEeeecccccccccCceEE
Confidence 3345555 443 3899999999998742 47899999955433 3566
Q ss_pred EEeeee--------cCceeecCCcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEE-eeCCeEE
Q psy15206 59 LAIPYT--------SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTI-FTGSTLQ 129 (232)
Q Consensus 59 ~~~~~~--------~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~-~~~~~l~ 129 (232)
|..... ...+.+...+.+. ..+...++..|+++.|.|.+.+.+-+.+.|.++..++....+++ ..++.|.
T Consensus 118 c~atv~~~gsi~Sr~a~v~~a~~~~f~-~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r~i~lpsG~L~ 196 (1381)
T KOG4221|consen 118 CLATVEDVGSILSRTAKVALAGLADFA-LQPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLDSRVIVLPSGALE 196 (1381)
T ss_pred EEEEccccceeecceEEEEecccCccc-cCccceeEecCCcEEEEEEEcCccCceeEEecccccccCCCcEEEcCCCcEE
Confidence 655222 3333333333333 24566788899999999999998888999999998776555543 3578999
Q ss_pred ECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEEecc------EEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCE
Q psy15206 130 IPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAP------IVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGE 203 (232)
Q Consensus 130 i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p------~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~ 203 (232)
|..++..|.|.|.|.+++...+..+....+.|...| .+...|....+..|+++.|.|.+.|.|.|.|.|.|||.
T Consensus 197 I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~ 276 (1381)
T KOG4221|consen 197 ISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGE 276 (1381)
T ss_pred ecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCe
Confidence 999999999999999998765545566677766333 24566778888899999999999999999999999998
Q ss_pred EecCCC-eE------EEEEeccccCCceEEEEecC
Q psy15206 204 IVVNDE-YH------SISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 204 ~~~~~~-~~------~~~~~~~~~~d~g~Y~C~~~ 231 (232)
.+..++ ++ .|.+.+++..|+|.|+|+|+
T Consensus 277 ~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~At 311 (1381)
T KOG4221|consen 277 KISVDSYRIVLVGGSSLLISNATDDDSGKYTCRAT 311 (1381)
T ss_pred eeeecceEEEEecccceEEeccccccCceEEEEec
Confidence 877553 22 33455778899999999986
No 7
>KOG4222|consensus
Probab=99.90 E-value=2e-23 Score=168.03 Aligned_cols=221 Identities=24% Similarity=0.463 Sum_probs=173.5
Q ss_pred cCCCeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCcEee--------------------------------eeE
Q psy15206 10 DTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL--------------------------------GRL 57 (232)
Q Consensus 10 ~~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~~--------------------------------~~~ 57 (232)
..+|.|+.- |.+..+..|+.++|.|.+++.|++.|+|+|++... |.|
T Consensus 29 d~~p~iieh-p~d~vvs~~~patlnc~asG~ppPti~w~k~G~~~~~~e~~shR~~lp~gsLf~l~~ahg~~a~~d~G~y 107 (1281)
T KOG4222|consen 29 DQPPRIIEH-PHDLVVSKGEPATLNCKASGDPPPTIEWYKDGENVFKGEPGSHRFLLPDGSLFLLRLAHGKKAGHDHGVY 107 (1281)
T ss_pred cCCCceEec-chhhhccCCCCceeecCCCCCCCCceecccCCcccCCCCCCCcceecCCccEEEEecccCCcccCCCcee
Confidence 458999999 99999999999999999999999999999965211 233
Q ss_pred EEEeeee-------cCceeecCCcEEecCCCCceEeecCCcEEEEeee-ccCCCCeEEEEeCCeeeCC---CCcEEeeCC
Q psy15206 58 HLAIPYT-------SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHA-EGHPIPTISWRRENNAILP---NGQTIFTGS 126 (232)
Q Consensus 58 ~~~~~~~-------~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~~W~~~~~~~~~---~~~~~~~~~ 126 (232)
.|..... ...|.+-....-+...+.......|+.+.|.|.- .+.+.+.+.|.|+|+.+.. .......++
T Consensus 108 ~cvasn~~g~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~lisgG 187 (1281)
T KOG4222|consen 108 SCVASNRLGEAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALISGG 187 (1281)
T ss_pred EeeecCccceeeecCceEEEEEechhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEecCC
Confidence 4433110 3333333222223345566677789999999985 5688899999999998752 223345678
Q ss_pred eEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEec
Q psy15206 127 TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVV 206 (232)
Q Consensus 127 ~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~ 206 (232)
.|.|.++...|.|.|.|++.|..|...+...++.|+.+|.+...+.++.+..|..+.+.|.+.|.|.|.+.|.|++..+.
T Consensus 188 ~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P 267 (1281)
T KOG4222|consen 188 NLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLP 267 (1281)
T ss_pred cEEEeccccCCCceeeeeecccccccccccceeeeccCCccccccccceeecccccccccccCCCCCCceeeeccCCCCC
Confidence 99999999999999999999999888888899999999999999999999999999999999999999999999776655
Q ss_pred CC------CeEEEEEeccccCCceEEEEecC
Q psy15206 207 ND------EYHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 207 ~~------~~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
.. +...+.+...+..|.|.|.|.+.
T Consensus 268 ~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~ 298 (1281)
T KOG4222|consen 268 RSRYSILDDTQTLRIDRVTPTDEGTYVCPAE 298 (1281)
T ss_pred ccceeeeeccccccccccCCCcccceeeecc
Confidence 32 22344455666689999999875
No 8
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.88 E-value=4.3e-21 Score=134.93 Aligned_cols=143 Identities=17% Similarity=0.295 Sum_probs=105.9
Q ss_pred CceEeecCCcEEEEeeeccCC-----------CCeEEEEeCCeeeCC---CC----------cEEeeCCeEEECCCCCCC
Q psy15206 82 QLSVAKEGQSVQLECHAEGHP-----------IPTISWRRENNAILP---NG----------QTIFTGSTLQIPRITKED 137 (232)
Q Consensus 82 ~~~~~~~g~~~~l~C~~~~~~-----------~~~~~W~~~~~~~~~---~~----------~~~~~~~~l~i~~~~~~~ 137 (232)
....+.+|+++.|.|.+.+.+ .+.+.|++.+..... .. .....+..|.|.++..+|
T Consensus 30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D 109 (227)
T PHA02826 30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID 109 (227)
T ss_pred ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence 445677999999999987643 347999998754210 00 111235689999999999
Q ss_pred CeEEEEEeEeCCCCceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEee-----cCCCCeEEEeeCCEEecCCCeE-
Q psy15206 138 RGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIE-----AYPHPILYWAKDGEIVVNDEYH- 211 (232)
Q Consensus 138 ~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~-----~~p~~~~~W~~~g~~~~~~~~~- 211 (232)
+|.|.|.+.|..+. ....+.|.|..++ .+..+..|+++.|.|.+. +.|.|.++|+|||..+..+.++
T Consensus 110 sG~Y~C~a~N~~~~-~~~~i~L~V~~~~------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~ 182 (227)
T PHA02826 110 EGIYICTISSGNIC-EESTIRLTFDSGT------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQ 182 (227)
T ss_pred CEEEEEEEEECCcc-eEEEEEEEEecCC------ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEE
Confidence 99999999997655 4556666664322 234567899999999975 3467899999999988644333
Q ss_pred ------EEEEeccccCCceEEEEecC
Q psy15206 212 ------SISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 212 ------~~~~~~~~~~d~g~Y~C~~~ 231 (232)
.|.+.++..+|+|.|+|.|+
T Consensus 183 ~~~~~~~L~I~~V~~~DsG~YtC~a~ 208 (227)
T PHA02826 183 LRNNNSTLVIKSATHDDSGIYTCNLR 208 (227)
T ss_pred EeCCCCEEEECcCCHHhCEEEEEEEE
Confidence 57778889999999999985
No 9
>KOG4222|consensus
Probab=99.85 E-value=9.9e-21 Score=152.82 Aligned_cols=226 Identities=23% Similarity=0.426 Sum_probs=173.4
Q ss_pred CCCCcccCCCeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCcEe--eeeEEEEee-ee----------------
Q psy15206 4 SPESQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKR--LGRLHLAIP-YT---------------- 64 (232)
Q Consensus 4 ~~~~~~~~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~--~~~~~~~~~-~~---------------- 64 (232)
.++++|+++|.+... +.+..+..|..+.|.|.+.+.|.+.+.|.++... ..+|.+... ++
T Consensus 217 ~A~lsv~e~P~f~~r-p~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~ry~i~~d~qtl~i~r~tp~deg~y~C 295 (1281)
T KOG4222|consen 217 PARLSVQEKPWFWKR-PKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPRSRYSILDDTQTLRIDRVTPTDEGTYVC 295 (1281)
T ss_pred cceeeeccCCccccc-cccceeecccccccccccCCCCCCceeeeccCCCCCccceeeeeccccccccccCCCcccceee
Confidence 367899999999999 9999999999999999999999999999995432 335555442 11
Q ss_pred -----------cCceeecCCcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCC--------CCc-EEee
Q psy15206 65 -----------SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILP--------NGQ-TIFT 124 (232)
Q Consensus 65 -----------~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~--------~~~-~~~~ 124 (232)
...++|..+|.+.. .+....+..|..+.|.|...|.|.|.+.|.+.+..-.. ..+ ....
T Consensus 296 ~a~n~vG~l~asa~ltV~apP~f~k-kp~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~ 374 (1281)
T KOG4222|consen 296 PAENLVGGLEASATLTVQAPPSFGK-KPRDQKVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSP 374 (1281)
T ss_pred eccccccccccccceEEecCccccc-ccCccccccCceEEeeeecCCCCCcceEEeccCcceecccCCCCCcCccceecC
Confidence 77888888887764 56667777889999999999999999999998754211 111 1223
Q ss_pred CCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEE------eccEEEeccceeeeeccCeEEEEEEeecCCCCeEEE
Q psy15206 125 GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE------FAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYW 198 (232)
Q Consensus 125 ~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~------~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W 198 (232)
.++|.|.+++..|.|.|.|...+..+....+.....+. .+|.+...+.+.....+..+.|.|.+.+.|-+.+.|
T Consensus 375 ~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~rPpp~i~~g~~nQtl~v~s~a~l~c~atg~P~p~i~w 454 (1281)
T KOG4222|consen 375 TGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSRPPPIIEQGPANQTLPVGSTASLPCSATGAPTPNISW 454 (1281)
T ss_pred CCCcccccccccccceEeecccccccccccceeEEEEeeeccCCCCceeeecccccccccCcccccChhhhCCCCCCchh
Confidence 45899999999999999999777665533332222221 245566778888888899999999999999999999
Q ss_pred eeCCEEecCC-------CeEEEEEeccccCCceEEEEecC
Q psy15206 199 AKDGEIVVND-------EYHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 199 ~~~g~~~~~~-------~~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
+++|-.+... ....+.+.+....|.|.|+|.++
T Consensus 455 l~dg~~v~~~d~~~s~~~~~~l~i~dl~~~DtG~YTc~as 494 (1281)
T KOG4222|consen 455 LKDGCNVMNPDSRISQQEIGSLRIRDLKGPDTGRYTCIAS 494 (1281)
T ss_pred hhcccccccCCcccceeeeceeeeeeeecCCCcceeeecc
Confidence 9998765432 23466667777799999999875
No 10
>KOG4194|consensus
Probab=99.76 E-value=9.6e-18 Score=128.42 Aligned_cols=152 Identities=22% Similarity=0.364 Sum_probs=120.2
Q ss_pred CCCceEeecCCcEEEEeeecc--CCCCeEEEEeCCeeeCCCC-----cE--Ee----------eCCeEEECCCCCCCCeE
Q psy15206 80 SPQLSVAKEGQSVQLECHAEG--HPIPTISWRRENNAILPNG-----QT--IF----------TGSTLQIPRITKEDRGA 140 (232)
Q Consensus 80 ~~~~~~~~~g~~~~l~C~~~~--~~~~~~~W~~~~~~~~~~~-----~~--~~----------~~~~l~i~~~~~~~~g~ 140 (232)
.|.......|+.+.|.|.+.+ ..+.++.|.++........ ++ +. ..+.|.+.+|...|.|.
T Consensus 509 qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt~td~gr 588 (873)
T KOG4194|consen 509 QPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVTFTDEGR 588 (873)
T ss_pred CchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeeeecccCce
Confidence 566666667999999999876 3345799998765321110 00 00 12468889999999999
Q ss_pred EEEEeEeCCCCceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEE-ec--CCC-------e
Q psy15206 141 YYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEI-VV--NDE-------Y 210 (232)
Q Consensus 141 y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~-~~--~~~-------~ 210 (232)
|.|.+.|..|+..+..+++.|...|.+...|.++....|+.+.|.|.+.|.|.|+|.|.|+|.. .. .+. .
T Consensus 589 YQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vmped 668 (873)
T KOG4194|consen 589 YQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVMPED 668 (873)
T ss_pred EEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeecCCC
Confidence 9999999999988899999999999999999999999999999999999999999999999875 21 111 1
Q ss_pred EEEEEeccccCCceEEEEecC
Q psy15206 211 HSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 211 ~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
-.+-+.+++.+|+|.|+|.|.
T Consensus 669 d~f~Itnvk~eD~GiYtC~A~ 689 (873)
T KOG4194|consen 669 DVFFITNVKIEDQGIYTCTAQ 689 (873)
T ss_pred CEEEEecccccccceeEEeee
Confidence 245566788999999999874
No 11
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.71 E-value=2.7e-16 Score=117.53 Aligned_cols=143 Identities=17% Similarity=0.253 Sum_probs=100.8
Q ss_pred EeecCCcEEEEeee-----ccCCCCeEEEEeCCeeeCCCCcEEe-eCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEE
Q psy15206 85 VAKEGQSVQLECHA-----EGHPIPTISWRRENNAILPNGQTIF-TGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIE 158 (232)
Q Consensus 85 ~~~~g~~~~l~C~~-----~~~~~~~~~W~~~~~~~~~~~~~~~-~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~ 158 (232)
...+|+.+.|.|.. .|.|.+.+.|++++.... ..... .+..|.|.++..+|+|.|+|.+.|..+. ....+.
T Consensus 37 ~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~--~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~-~~~s~~ 113 (326)
T PHA02785 37 MELENEPVILPCPQINTLSSGYNILDILWEKRGADND--RIIPIDNGSNMLILNPTQSDSGIYICITKNETYC-DMMSLN 113 (326)
T ss_pred hhhcCCCEEEECCCccccccCCCCceEEEEECCCccc--eEEEccCCceEEEcccCcccCeEEEEEEECCCcc-eEEEEE
Confidence 45579999999996 578888999999875321 11112 2335889999999999999999998765 445566
Q ss_pred EEEEe--ccEEEeccceeeeeccCeEEEEEE-----eecCCCCeEEEeeCCEEecCC-----CeEEEEEeccccCCceEE
Q psy15206 159 VKVEF--APIVTVQSTRIGQALHHDMDLDCH-----IEAYPHPILYWAKDGEIVVND-----EYHSISNFGTSEGTTGSL 226 (232)
Q Consensus 159 l~v~~--~p~~~~~~~~~~~~~g~~~~l~C~-----~~~~p~~~~~W~~~g~~~~~~-----~~~~~~~~~~~~~d~g~Y 226 (232)
|.|.. ++.+...+.+..+.+|..+.+.|. ..+.|++.+.|++++. +... ..-.|.+.+++.+|+|.|
T Consensus 114 L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~~~~r~~~~~~~~L~i~~v~~~d~G~Y 192 (326)
T PHA02785 114 LTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-LRNKRLKQRTPGIITIEDVRKNDAGYY 192 (326)
T ss_pred EEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-cCCcceEecCCCeEEEeecChhhCeEE
Confidence 66643 232322233445668999999997 2467888999998653 2211 123577788999999999
Q ss_pred EEecC
Q psy15206 227 QCKVP 231 (232)
Q Consensus 227 ~C~~~ 231 (232)
+|.|.
T Consensus 193 ~C~~~ 197 (326)
T PHA02785 193 TCVLK 197 (326)
T ss_pred EEEEE
Confidence 99985
No 12
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.66 E-value=3.1e-15 Score=90.22 Aligned_cols=81 Identities=35% Similarity=0.601 Sum_probs=66.6
Q ss_pred CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEE
Q psy15206 80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEV 159 (232)
Q Consensus 80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l 159 (232)
.+....+.+|+.+.|.|.+.|.|.|.+.|++++..+....+....++.|.|.++..+|.|.|.|.+.|..|. ....+.+
T Consensus 7 ~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~~~~l 85 (88)
T cd05851 7 KFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAENIKGK-DKHQARV 85 (88)
T ss_pred ccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEecCCCEEEECcCChhhCEEEEEEEEcCCCc-eEEEEEE
Confidence 456677889999999999999999999999998776544444445668999999999999999999999887 4555555
Q ss_pred EE
Q psy15206 160 KV 161 (232)
Q Consensus 160 ~v 161 (232)
.|
T Consensus 86 ~V 87 (88)
T cd05851 86 YV 87 (88)
T ss_pred EE
Confidence 54
No 13
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.66 E-value=6.1e-15 Score=90.66 Aligned_cols=85 Identities=24% Similarity=0.354 Sum_probs=71.9
Q ss_pred CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEee----CCeEEECCCCCCCCeEEEEEeEeCCCCceee
Q psy15206 80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT----GSTLQIPRITKEDRGAYYCVAQNGIGRGARR 155 (232)
Q Consensus 80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~ 155 (232)
.+....+..|+.+.|.|.+.|.|.+.+.|++++..+....+.... .+.|.|.++..+|.|.|+|.+.|..|. ...
T Consensus 6 ~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~-~~~ 84 (98)
T cd05762 6 FPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGS-RQA 84 (98)
T ss_pred CCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCc-eeE
Confidence 456678889999999999999999999999999988655444332 467999999999999999999999998 666
Q ss_pred EEEEEEEecc
Q psy15206 156 KIEVKVEFAP 165 (232)
Q Consensus 156 ~~~l~v~~~p 165 (232)
.+.|.|...|
T Consensus 85 ~~~l~V~~~P 94 (98)
T cd05762 85 QVNLTVVDKP 94 (98)
T ss_pred EEEEEEecCC
Confidence 8888887765
No 14
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.61 E-value=1.4e-13 Score=97.18 Aligned_cols=123 Identities=20% Similarity=0.291 Sum_probs=86.0
Q ss_pred CcceEeecCCeEEEEEEecCC-----------CCCeEEEEeCcEee----------------------------------
Q psy15206 20 TQLSVAKEGQSVQLECHAEGH-----------PIPTISWRRNFKRL---------------------------------- 54 (232)
Q Consensus 20 ~~~~~~~~G~~v~l~C~~~~~-----------p~~~~~W~~~~~~~---------------------------------- 54 (232)
..++.+.+|++++|.|.+.+. ..+.+.|+|.+...
T Consensus 29 ~~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~ 108 (227)
T PHA02826 29 LTPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINI 108 (227)
T ss_pred cceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChH
Confidence 456789999999999998663 35689999964321
Q ss_pred --eeEEEEeeee------cCceeecCCcEEecCCCCceEeecCCcEEEEeeecc-----CCCCeEEEEeCCeeeCCCCcE
Q psy15206 55 --GRLHLAIPYT------SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEG-----HPIPTISWRRENNAILPNGQT 121 (232)
Q Consensus 55 --~~~~~~~~~~------~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-----~~~~~~~W~~~~~~~~~~~~~ 121 (232)
|.|.|.+... .+.|.|.. ......+.+|+.+.|.|.+.+ .|.|.++|++++..+....+.
T Consensus 109 DsG~Y~C~a~N~~~~~~~~i~L~V~~-------~~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~ 181 (227)
T PHA02826 109 DEGIYICTISSGNICEESTIRLTFDS-------GTINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRI 181 (227)
T ss_pred HCEEEEEEEEECCcceEEEEEEEEec-------CCccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCE
Confidence 2344443221 22333321 122345668999999999753 356889999999988655554
Q ss_pred Ee--eCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206 122 IF--TGSTLQIPRITKEDRGAYYCVAQNGI 149 (232)
Q Consensus 122 ~~--~~~~l~i~~~~~~~~g~y~C~~~~~~ 149 (232)
.. .++.|.|.++..+|+|.|+|.+....
T Consensus 182 ~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~ 211 (227)
T PHA02826 182 QLRNNNSTLVIKSATHDDSGIYTCNLRFNK 211 (227)
T ss_pred EEeCCCCEEEECcCCHHhCEEEEEEEEEeE
Confidence 43 34579999999999999999998753
No 15
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.60 E-value=4.1e-14 Score=85.60 Aligned_cols=81 Identities=36% Similarity=0.672 Sum_probs=66.3
Q ss_pred CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEE
Q psy15206 80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEV 159 (232)
Q Consensus 80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l 159 (232)
.+....+.+|+.+.|.|.+.|.|.|.+.|++++..+..........+.|.|.+++.+|.|.|.|.+.|..|. ......+
T Consensus 7 ~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l 85 (88)
T cd04968 7 FPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAENIKGK-DTHQGRI 85 (88)
T ss_pred CCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEEEeCCEEEECCCCcccCEEEEEEEEECCCc-EEEEEEE
Confidence 456677889999999999999999999999988776554444456778999999999999999999999887 4455555
Q ss_pred EE
Q psy15206 160 KV 161 (232)
Q Consensus 160 ~v 161 (232)
.|
T Consensus 86 ~V 87 (88)
T cd04968 86 YV 87 (88)
T ss_pred EE
Confidence 44
No 16
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.57 E-value=1.5e-13 Score=90.47 Aligned_cols=76 Identities=24% Similarity=0.472 Sum_probs=63.4
Q ss_pred eEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecCCC--CeEEEeeCCE
Q psy15206 127 TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPH--PILYWAKDGE 203 (232)
Q Consensus 127 ~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~~~W~~~g~ 203 (232)
+|.|.+++..|.|.|.|.+.+..+. ....+.|.|..+|.+...+.......|+.+.|.|.+.|+++ +.|.|+++|.
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~-~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~ 79 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQ-AQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPP 79 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcc-eeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCC
Confidence 5899999999999999999887665 66778899999999877766555557889999999999644 3799999974
No 17
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.56 E-value=6.1e-14 Score=81.26 Aligned_cols=70 Identities=31% Similarity=0.606 Sum_probs=57.8
Q ss_pred CCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEe-eCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEE
Q psy15206 89 GQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF-TGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEV 159 (232)
Q Consensus 89 g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~-~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l 159 (232)
|+.+.|.|.+.|.|.|.+.|++++..+....+... .+++|.|.++..+|.|.|.|.+.|..|. ......|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~~~~l 71 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGK-ANSTGVL 71 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCc-eeEEEEE
Confidence 57899999999999999999999987765555544 5678999999999999999999999887 4344444
No 18
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.56 E-value=7.3e-14 Score=83.78 Aligned_cols=80 Identities=26% Similarity=0.502 Sum_probs=67.1
Q ss_pred CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEE
Q psy15206 80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEV 159 (232)
Q Consensus 80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l 159 (232)
.+....+..|+.+.|.|.+.|.|.|.+.|++++..+....+....++.|.|.++..+|.|.|.|.+.|..|. ....+.|
T Consensus 5 ~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l 83 (85)
T cd05728 5 VISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAENKHGT-IYASAEL 83 (85)
T ss_pred cCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEECCCCe-EEEEEEE
Confidence 455677889999999999999999999999999987665566667789999999999999999999998887 4444444
Q ss_pred E
Q psy15206 160 K 160 (232)
Q Consensus 160 ~ 160 (232)
.
T Consensus 84 ~ 84 (85)
T cd05728 84 A 84 (85)
T ss_pred E
Confidence 3
No 19
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.56 E-value=5.7e-14 Score=81.97 Aligned_cols=72 Identities=32% Similarity=0.668 Sum_probs=58.9
Q ss_pred cCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcE-EeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEE
Q psy15206 88 EGQSVQLECHAEGHPIPTISWRRENNAILPNGQT-IFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVK 160 (232)
Q Consensus 88 ~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~ 160 (232)
+|+.+.|.|.+.|.|.|.+.|++++..+....+. ....+.|.|.++..+|.|.|.|.+.|..|. ....+.|.
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~~~~L~ 73 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGS-QRTVAQLT 73 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCc-eeEEEEEe
Confidence 5889999999999999999999999887554333 334678999999999999999999999887 44444443
No 20
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.56 E-value=1.6e-13 Score=83.68 Aligned_cols=79 Identities=27% Similarity=0.497 Sum_probs=63.0
Q ss_pred CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEee-----CCeEEECCCCCCCCeEEEEEeEeCCCCcee
Q psy15206 80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT-----GSTLQIPRITKEDRGAYYCVAQNGIGRGAR 154 (232)
Q Consensus 80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~ 154 (232)
.+....+.+|+.+.|.|.+.|.|.|.+.|++++..+....+.... ...|.|.++..+|+|.|+|.+.|..|. ..
T Consensus 7 lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~ 85 (92)
T cd05737 7 LPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGG-ET 85 (92)
T ss_pred CCceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCc-ce
Confidence 455577889999999999999999999999999887655443321 237999999999999999999998887 43
Q ss_pred eEEEE
Q psy15206 155 RKIEV 159 (232)
Q Consensus 155 ~~~~l 159 (232)
..+.+
T Consensus 86 ~~~~v 90 (92)
T cd05737 86 VDVTV 90 (92)
T ss_pred EEEEE
Confidence 44443
No 21
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.54 E-value=1.9e-13 Score=84.21 Aligned_cols=81 Identities=22% Similarity=0.350 Sum_probs=65.3
Q ss_pred CCceEeecCCcEEEEeeecc-CCCCeEEEEeCCeeeCCCCcEE-e--------eCCeEEECCCCCCCCeEEEEEeEeCCC
Q psy15206 81 PQLSVAKEGQSVQLECHAEG-HPIPTISWRRENNAILPNGQTI-F--------TGSTLQIPRITKEDRGAYYCVAQNGIG 150 (232)
Q Consensus 81 ~~~~~~~~g~~~~l~C~~~~-~~~~~~~W~~~~~~~~~~~~~~-~--------~~~~l~i~~~~~~~~g~y~C~~~~~~~ 150 (232)
.....+..|+++.|.|.+.| .|+|.+.|+|+|..+....... . ..+.|.|..+..+|+|.|+|.+.|..|
T Consensus 10 ~~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G 89 (101)
T cd04975 10 NTTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDA 89 (101)
T ss_pred CceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCc
Confidence 45567888999999999999 8888999999998876433322 1 136799999999999999999999988
Q ss_pred CceeeEEEEEEE
Q psy15206 151 RGARRKIEVKVE 162 (232)
Q Consensus 151 ~~~~~~~~l~v~ 162 (232)
. ....+.|.|.
T Consensus 90 ~-~~~t~~L~V~ 100 (101)
T cd04975 90 S-KSLTFELYVN 100 (101)
T ss_pred c-EEEEEEEEEE
Confidence 7 6666666664
No 22
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.54 E-value=2.1e-13 Score=80.02 Aligned_cols=72 Identities=26% Similarity=0.547 Sum_probs=58.4
Q ss_pred CCcEEEEeeeccCCCCeEEEEeCCeeeCCCC---cEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEE
Q psy15206 89 GQSVQLECHAEGHPIPTISWRRENNAILPNG---QTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161 (232)
Q Consensus 89 g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~---~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v 161 (232)
|+.+.|.|.+.|.|.|.+.|+++|..+.... +.....+.|.|.++..+|+|.|.|.+.|..|. ......|.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGN-LLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCe-EEEEEEEEE
Confidence 6789999999999999999999998775422 34445678999999999999999999998887 444555543
No 23
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.54 E-value=4.6e-14 Score=85.09 Aligned_cols=68 Identities=16% Similarity=0.301 Sum_probs=57.0
Q ss_pred ccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCe-----EEEEEeccccCCceEEEEecC
Q psy15206 164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEY-----HSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~-----~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
+|.+...+.+..+..|+.+.|.|.+.|.|.|.++|+|++..+....+ ..|.+.++..+|+|.|.|.|.
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~ 73 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAE 73 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEecCCCEEEECcCChhhCEEEEEEEE
Confidence 46777788888899999999999999999999999999876644322 357778888899999999974
No 24
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.53 E-value=4.3e-13 Score=81.23 Aligned_cols=80 Identities=26% Similarity=0.442 Sum_probs=65.1
Q ss_pred CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEe--eCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEE
Q psy15206 80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF--TGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKI 157 (232)
Q Consensus 80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~ 157 (232)
.+....+.+|+++.|.|.+.|. .|.+.|++++..+.... ... ..+.|.|.++..+|.|.|.|.+.|..|...+..+
T Consensus 9 ~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~ 86 (91)
T cd05740 9 SVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPR-LQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPY 86 (91)
T ss_pred ccCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCCC-EEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeE
Confidence 3445678899999999999999 89999999998765432 322 3468999999999999999999999988666676
Q ss_pred EEEE
Q psy15206 158 EVKV 161 (232)
Q Consensus 158 ~l~v 161 (232)
.|.|
T Consensus 87 ~L~V 90 (91)
T cd05740 87 ILNV 90 (91)
T ss_pred EEEe
Confidence 6665
No 25
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.52 E-value=3.8e-13 Score=79.46 Aligned_cols=69 Identities=28% Similarity=0.521 Sum_probs=58.5
Q ss_pred CceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206 82 QLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGR 151 (232)
Q Consensus 82 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~ 151 (232)
....+.+|+.+.|.|.+.+. .+.+.|+++|..+....+.......|.|.++..+|+|.|.|.+.|..|.
T Consensus 2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~ 70 (79)
T cd04973 2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRITGEEVQIKDAVPRDSGLYACVTSSPSGS 70 (79)
T ss_pred CcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEeCCEEEECCCChhhCEEEEEEEeCCCCc
Confidence 34567789999999999885 5689999999888766566666778999999999999999999988766
No 26
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.52 E-value=6e-13 Score=81.12 Aligned_cols=83 Identities=31% Similarity=0.661 Sum_probs=66.0
Q ss_pred CcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEee----CCeEEECCCCCCCCeEEEEEeEeC
Q psy15206 73 PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT----GSTLQIPRITKEDRGAYYCVAQNG 148 (232)
Q Consensus 73 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~~g~y~C~~~~~ 148 (232)
+|.+.. .+....+..|+.+.|.|.+.|.|.+.+.|++++..+....+.... .+.|.|.++..+|.|.|.|.+.|.
T Consensus 3 ~~~~~~-~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~ 81 (92)
T cd05747 3 PATILT-KPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENS 81 (92)
T ss_pred CCcccc-cCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcC
Confidence 344443 567788999999999999999999999999999877654444332 348999999999999999999998
Q ss_pred CCCceeeEE
Q psy15206 149 IGRGARRKI 157 (232)
Q Consensus 149 ~~~~~~~~~ 157 (232)
.|. ....+
T Consensus 82 ~G~-~~~~~ 89 (92)
T cd05747 82 EGK-QEAQF 89 (92)
T ss_pred CCC-EeEEE
Confidence 887 43333
No 27
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.51 E-value=3.5e-13 Score=81.20 Aligned_cols=76 Identities=33% Similarity=0.555 Sum_probs=61.7
Q ss_pred CCcEEEEeeeccCCCCeEEEEeCCeeeCCCC-cEEee--------CCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEE
Q psy15206 89 GQSVQLECHAEGHPIPTISWRRENNAILPNG-QTIFT--------GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEV 159 (232)
Q Consensus 89 g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~-~~~~~--------~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l 159 (232)
|+.+.|.|.+.|.|++.+.|++++..+.... ++... .+.|.|.++...|.|.|+|.+.|..|. ....+.|
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~-~~~~~~L 79 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGE-DRGIIQL 79 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCc-ceEEEEE
Confidence 6889999999999999999999997764332 32221 157999999999999999999999998 6677888
Q ss_pred EEEecc
Q psy15206 160 KVEFAP 165 (232)
Q Consensus 160 ~v~~~p 165 (232)
.|..+|
T Consensus 80 ~V~~~P 85 (88)
T cd05735 80 TVQEPP 85 (88)
T ss_pred EEeCCC
Confidence 887665
No 28
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.50 E-value=3e-13 Score=78.04 Aligned_cols=69 Identities=26% Similarity=0.490 Sum_probs=56.7
Q ss_pred EEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEE
Q psy15206 92 VQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161 (232)
Q Consensus 92 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v 161 (232)
+.|.|.+.|.|.|.+.|+++|..+....+.....+.|.|.++...|+|.|+|.+.|..|. ....+.+.+
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~-~~~~~~~~~ 69 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAK-LEKRLTFTL 69 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEEcCCCEEEECcCCHHHCEEEEEEEEcCCcc-EEEEEEEEE
Confidence 368999999999999999999988666555666788999999999999999999998776 444444443
No 29
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.50 E-value=8.3e-13 Score=81.46 Aligned_cols=79 Identities=25% Similarity=0.383 Sum_probs=63.6
Q ss_pred ceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEe----------eCCeEEECCCCCCCCeEEEEEeEeCCCCc
Q psy15206 83 LSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF----------TGSTLQIPRITKEDRGAYYCVAQNGIGRG 152 (232)
Q Consensus 83 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~----------~~~~l~i~~~~~~~~g~y~C~~~~~~~~~ 152 (232)
...+..|+.+.|.|.+.|.|.|.+.|+++|..+........ ..+.|.|.++..+|.|.|+|.+.|..|.
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~- 90 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAV- 90 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCce-
Confidence 56677899999999999999999999999998765433211 1357999999999999999999999877
Q ss_pred eeeEEEEEEE
Q psy15206 153 ARRKIEVKVE 162 (232)
Q Consensus 153 ~~~~~~l~v~ 162 (232)
.+..+.+.|.
T Consensus 91 ~~~t~~l~V~ 100 (101)
T cd05859 91 KSYTFALQIQ 100 (101)
T ss_pred EEEEEEEEEE
Confidence 5556666553
No 30
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.50 E-value=8.5e-13 Score=79.12 Aligned_cols=77 Identities=27% Similarity=0.493 Sum_probs=61.8
Q ss_pred ceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCC-CcEEee----CCeEEECCCCCCCCeEEEEEeEeCCCCceeeEE
Q psy15206 83 LSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPN-GQTIFT----GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKI 157 (232)
Q Consensus 83 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~-~~~~~~----~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~ 157 (232)
...+..|+.+.|.|.+.|.|.|.+.|++++..+... .+.... .+.|.|.++..+|+|.|.|.+.|..|. ....+
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~-~~~~~ 82 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGE-DHASL 82 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCc-EEEEE
Confidence 356778999999999999999999999999887543 233222 357999999999999999999999987 54555
Q ss_pred EEE
Q psy15206 158 EVK 160 (232)
Q Consensus 158 ~l~ 160 (232)
.|.
T Consensus 83 ~l~ 85 (86)
T cd05894 83 FVK 85 (86)
T ss_pred EEE
Confidence 543
No 31
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.50 E-value=2.6e-13 Score=76.74 Aligned_cols=65 Identities=23% Similarity=0.441 Sum_probs=52.9
Q ss_pred EEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEE
Q psy15206 92 VQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161 (232)
Q Consensus 92 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v 161 (232)
+.|.|.+.|.|.|.+.|+++|..+... ...+.|.|.++..+|+|.|+|.+.|..|. ....+.+.+
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~----~~~~~L~i~~v~~~D~G~YtC~a~N~~g~-~~~~~~~~l 65 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGK----HSQHSLQIKDVTEASAGTYTLVLWNSAAG-LEKRISLEL 65 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECccc----CCcCEEEECCCCHHHCEEEEEEEEECCcc-EEEEEEEEE
Confidence 468999999999999999999887532 23568999999999999999999999886 444544443
No 32
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.49 E-value=5.8e-13 Score=77.99 Aligned_cols=72 Identities=28% Similarity=0.472 Sum_probs=57.6
Q ss_pred CCcEEEEeeeccCCCCeEEEEeCCeeeCCCC---cEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEE
Q psy15206 89 GQSVQLECHAEGHPIPTISWRRENNAILPNG---QTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161 (232)
Q Consensus 89 g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~---~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v 161 (232)
|+.+.|.|.+.|.|.|.+.|+++|..+.... ......+.|.|.++...|.|.|.|.+.|..|. ....+.|.|
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~-~~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGY-LLANAFVNV 75 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCE-EEEEEEEEe
Confidence 6789999999999999999999998874321 22334568999999999999999999999887 545555554
No 33
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.48 E-value=1.5e-12 Score=78.49 Aligned_cols=80 Identities=31% Similarity=0.606 Sum_probs=62.9
Q ss_pred CCceEeecCCcEEEEeee-ccCCCCeEEEEeCCeeeCCC-CcE-EeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEE
Q psy15206 81 PQLSVAKEGQSVQLECHA-EGHPIPTISWRRENNAILPN-GQT-IFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKI 157 (232)
Q Consensus 81 ~~~~~~~~g~~~~l~C~~-~~~~~~~~~W~~~~~~~~~~-~~~-~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~ 157 (232)
+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+... .+. ....+.|.|.++..+|.|.|.|.+.|..|...+..+
T Consensus 3 p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~ 82 (86)
T cd05724 3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAAA 82 (86)
T ss_pred CccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeeeeE
Confidence 456677899999999998 68889999999999887542 222 223578999999999999999999998887555444
Q ss_pred EEE
Q psy15206 158 EVK 160 (232)
Q Consensus 158 ~l~ 160 (232)
.+.
T Consensus 83 ~l~ 85 (86)
T cd05724 83 RLS 85 (86)
T ss_pred EEE
Confidence 443
No 34
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.48 E-value=1.2e-12 Score=80.02 Aligned_cols=81 Identities=27% Similarity=0.443 Sum_probs=60.6
Q ss_pred CCceEeecCCcEEEEeeeccCCC-CeEEEEe-CCeeeCCCC-cEEe-e----CCeEEECCCCCCCCeEEEEEeEeCCCCc
Q psy15206 81 PQLSVAKEGQSVQLECHAEGHPI-PTISWRR-ENNAILPNG-QTIF-T----GSTLQIPRITKEDRGAYYCVAQNGIGRG 152 (232)
Q Consensus 81 ~~~~~~~~g~~~~l~C~~~~~~~-~~~~W~~-~~~~~~~~~-~~~~-~----~~~l~i~~~~~~~~g~y~C~~~~~~~~~ 152 (232)
+....+..|+.+.|.|.+.|.|. |.+.|++ ++..+.... +... . .+.|.|.++..+|.|.|+|.+.|..+..
T Consensus 7 p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~ 86 (96)
T cd05865 7 PSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGE 86 (96)
T ss_pred CCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCc
Confidence 44556778999999999999984 7999998 665554322 3222 1 2579999999999999999999986443
Q ss_pred eeeEEEEEE
Q psy15206 153 ARRKIEVKV 161 (232)
Q Consensus 153 ~~~~~~l~v 161 (232)
....+.|.|
T Consensus 87 ~~~s~~l~v 95 (96)
T cd05865 87 SEATVNVKI 95 (96)
T ss_pred EEEEEEEEE
Confidence 666666654
No 35
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.48 E-value=3.8e-13 Score=82.71 Aligned_cols=67 Identities=12% Similarity=0.166 Sum_probs=56.1
Q ss_pred cEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCC---------eEEEEEeccccCCceEEEEecC
Q psy15206 165 PIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDE---------YHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 165 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~---------~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
|.+...+.+..+..|+.+.|.|.+.|.|.+.+.|+|+|..+..+. ...|.+.++...|+|.|+|.|.
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~ 76 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVE 76 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEE
Confidence 455667778889999999999999999999999999998876433 3456777888899999999974
No 36
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.48 E-value=8.4e-13 Score=76.29 Aligned_cols=69 Identities=28% Similarity=0.654 Sum_probs=55.5
Q ss_pred cEEEEeeeccCCCCeEEEEeCCeeeCCCCcEE-eeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEE
Q psy15206 91 SVQLECHAEGHPIPTISWRRENNAILPNGQTI-FTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVK 160 (232)
Q Consensus 91 ~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~-~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~ 160 (232)
.+.|.|.+.|.|.|.+.|++++..+....+.. ...+.|.|.++..+|.|.|+|.+.|..|. ....+.|.
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~-~~~~~~L~ 70 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGN-VQASAQLI 70 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCE-EEEEEEEE
Confidence 37899999999999999999998876554433 34567899999999999999999999887 44444443
No 37
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.48 E-value=8.9e-13 Score=76.73 Aligned_cols=70 Identities=31% Similarity=0.613 Sum_probs=57.3
Q ss_pred CCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEe-eCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEE
Q psy15206 89 GQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF-TGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEV 159 (232)
Q Consensus 89 g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~-~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l 159 (232)
|+.+.|.|.+.|.|.+.+.|++++..+....+... ..+.|.|.++..+|.|.|+|.+.|..|. ....+.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l 71 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGK-ANSTGSL 71 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCc-eEEEEEE
Confidence 67899999999999999999999988765544433 3468999999999999999999999887 4444444
No 38
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.47 E-value=9.8e-13 Score=77.29 Aligned_cols=72 Identities=33% Similarity=0.527 Sum_probs=58.3
Q ss_pred CCcEEEEeeeccCCCCeEEEEeCCeeeCCCC---cEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEE
Q psy15206 89 GQSVQLECHAEGHPIPTISWRRENNAILPNG---QTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161 (232)
Q Consensus 89 g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~---~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v 161 (232)
|+.+.|.|.+.|.|.|.+.|++++..+.... ......+.|.|.++..+|.|.|.|.+.|..|. ....+.+.|
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~-~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGY-LLANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCe-EEEeEEEEE
Confidence 6789999999999999999999998775433 23445678999999999999999999998887 445555544
No 39
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.47 E-value=2.9e-12 Score=77.92 Aligned_cols=71 Identities=28% Similarity=0.528 Sum_probs=56.3
Q ss_pred CCcEEEEeeeccCCCCeEEEEeCCeeeCC-CCcEEeeCCeEEECCCC-CCCCeEEEEEeEeCCCCceeeEEEE
Q psy15206 89 GQSVQLECHAEGHPIPTISWRRENNAILP-NGQTIFTGSTLQIPRIT-KEDRGAYYCVAQNGIGRGARRKIEV 159 (232)
Q Consensus 89 g~~~~l~C~~~~~~~~~~~W~~~~~~~~~-~~~~~~~~~~l~i~~~~-~~~~g~y~C~~~~~~~~~~~~~~~l 159 (232)
+..+.|.|.+.|.|.|.+.|++++..+.. ..+....++.|.|.++. .+|.|.|.|.+.|..|...+..+.|
T Consensus 19 ~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l 91 (93)
T cd05849 19 EGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATL 91 (93)
T ss_pred CCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEECCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEE
Confidence 34799999999999999999999987643 33455567889999885 6899999999999988755444433
No 40
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.47 E-value=3.9e-12 Score=77.67 Aligned_cols=80 Identities=26% Similarity=0.453 Sum_probs=60.2
Q ss_pred CCCceEeecC---CcEEEEeeeccCCCCeEEEEeCCeeeCCC--CcEEeeCCeEEECCCC-CCCCeEEEEEeEeCCCCce
Q psy15206 80 SPQLSVAKEG---QSVQLECHAEGHPIPTISWRRENNAILPN--GQTIFTGSTLQIPRIT-KEDRGAYYCVAQNGIGRGA 153 (232)
Q Consensus 80 ~~~~~~~~~g---~~~~l~C~~~~~~~~~~~W~~~~~~~~~~--~~~~~~~~~l~i~~~~-~~~~g~y~C~~~~~~~~~~ 153 (232)
.+....+.+| +.+.|.|.+.|.|.+.++|+++|..+... .+.....+.|.|.++. ..|.|.|.|.+.|..|...
T Consensus 7 ~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~ 86 (94)
T cd05850 7 QPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAINRCGTVV 86 (94)
T ss_pred CCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEcCcCcEE
Confidence 3444444444 57999999999999999999999887532 2344556789998765 6999999999999998755
Q ss_pred eeEEEE
Q psy15206 154 RRKIEV 159 (232)
Q Consensus 154 ~~~~~l 159 (232)
+..+.|
T Consensus 87 s~~a~l 92 (94)
T cd05850 87 SREANL 92 (94)
T ss_pred EEEEEE
Confidence 544443
No 41
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.47 E-value=1.1e-12 Score=77.76 Aligned_cols=75 Identities=20% Similarity=0.339 Sum_probs=59.8
Q ss_pred CcEEEEeeeccC--CCCeEEEEeCCeeeCCC--C-cEEe-----eCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEE
Q psy15206 90 QSVQLECHAEGH--PIPTISWRRENNAILPN--G-QTIF-----TGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEV 159 (232)
Q Consensus 90 ~~~~l~C~~~~~--~~~~~~W~~~~~~~~~~--~-~~~~-----~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l 159 (232)
+++.|.|.+.+. +.+.+.|+++|..+... . ++.. ..+.|.|.+++..|+|.|+|.+.+..+. ......|
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~-~~a~a~L 79 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDK-LSAAADL 79 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCc-eEEEEEE
Confidence 468899999764 46789999999988532 2 3322 3468999999999999999999999887 6778888
Q ss_pred EEEecc
Q psy15206 160 KVEFAP 165 (232)
Q Consensus 160 ~v~~~p 165 (232)
.|..||
T Consensus 80 ~V~~pP 85 (85)
T cd05853 80 IVRGPP 85 (85)
T ss_pred EEecCC
Confidence 888776
No 42
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.47 E-value=4.6e-13 Score=81.65 Aligned_cols=68 Identities=13% Similarity=0.364 Sum_probs=57.1
Q ss_pred ccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCe---------EEEEEeccccCCceEEEEecC
Q psy15206 164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEY---------HSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~---------~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
+|.+...+.+..+..|+.+.|.|.+.|.|.|.+.|+|+|..+..+.+ ..|.+.++...|+|.|.|.|+
T Consensus 3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~ 79 (92)
T cd05747 3 PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVE 79 (92)
T ss_pred CCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEE
Confidence 56777778888999999999999999999999999999987654332 356667788899999999874
No 43
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.47 E-value=1.4e-12 Score=78.39 Aligned_cols=76 Identities=21% Similarity=0.486 Sum_probs=60.1
Q ss_pred eEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcE---E--eeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEE
Q psy15206 84 SVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQT---I--FTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIE 158 (232)
Q Consensus 84 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~---~--~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~ 158 (232)
..+..|+.+.|.|.+.|.|.+.+.|++++..+...... . .....|.|.++..+|.|.|+|.+.|..|. ....+.
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~-~~~~~~ 82 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGS-INHTYH 82 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCE-EEEEEE
Confidence 45668999999999999999999999999887543321 1 12346899999999999999999999887 545555
Q ss_pred EE
Q psy15206 159 VK 160 (232)
Q Consensus 159 l~ 160 (232)
|.
T Consensus 83 l~ 84 (85)
T cd05857 83 LD 84 (85)
T ss_pred EE
Confidence 54
No 44
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.46 E-value=1.3e-12 Score=78.96 Aligned_cols=80 Identities=23% Similarity=0.415 Sum_probs=62.6
Q ss_pred CCceEeecCCcEEEEeeeccCCCCeEEEEeC-CeeeCCCCcEEee-CC---eEEECCCCCCCCeEEEEEeEeCCCCceee
Q psy15206 81 PQLSVAKEGQSVQLECHAEGHPIPTISWRRE-NNAILPNGQTIFT-GS---TLQIPRITKEDRGAYYCVAQNGIGRGARR 155 (232)
Q Consensus 81 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~-~~~~~~~~~~~~~-~~---~l~i~~~~~~~~g~y~C~~~~~~~~~~~~ 155 (232)
+....+..|+++.|.|.+.|.|. .+.|+++ +..+....+.... ++ .|.|.++..+|.|.|+|.+.|..|....+
T Consensus 7 ~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~ 85 (92)
T cd05866 7 LSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEA 85 (92)
T ss_pred ecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEE
Confidence 44567778999999999999887 8999985 5555444444332 22 79999999999999999999998886666
Q ss_pred EEEEEE
Q psy15206 156 KIEVKV 161 (232)
Q Consensus 156 ~~~l~v 161 (232)
.+.|.+
T Consensus 86 ~i~l~~ 91 (92)
T cd05866 86 TVVLEI 91 (92)
T ss_pred EEEEEE
Confidence 666654
No 45
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.46 E-value=8.6e-13 Score=75.91 Aligned_cols=68 Identities=29% Similarity=0.697 Sum_probs=53.9
Q ss_pred EEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEE
Q psy15206 92 VQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVK 160 (232)
Q Consensus 92 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~ 160 (232)
+.|.|.+.|.|.|.+.|++++..+..........+.|.|.++..+|.|.|+|.+.|..|. ......|.
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~ 68 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGK-IEASASLT 68 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCCCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCc-EEEEEEEE
Confidence 468999999999999999998766444333445678999999999999999999999887 44444443
No 46
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.46 E-value=9.5e-13 Score=76.52 Aligned_cols=68 Identities=32% Similarity=0.522 Sum_probs=52.9
Q ss_pred EEEEeeeccCCCCeEEEEeCCeeeCCC-CcEEe-e-C-C--eEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEE
Q psy15206 92 VQLECHAEGHPIPTISWRRENNAILPN-GQTIF-T-G-S--TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVK 160 (232)
Q Consensus 92 ~~l~C~~~~~~~~~~~W~~~~~~~~~~-~~~~~-~-~-~--~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~ 160 (232)
+.|.|.+.|.|.|.+.|++++..+... .++.. . . + +|.|.++..+|.|.|+|.+.|..|. ......|.
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~-~~~~a~L~ 74 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGV-ATCHARLD 74 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCe-EEEEEEEe
Confidence 468999999999999999999887643 33322 1 1 2 7999999999999999999999887 44444443
No 47
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.46 E-value=3.2e-12 Score=80.22 Aligned_cols=77 Identities=21% Similarity=0.362 Sum_probs=60.8
Q ss_pred cCCcEEEEeeeccCCCCeEEEEeCCeeeCCCC-cEEe--------eCCeEEECCCC-CCCCeEEEEEeEeCCCCceeeEE
Q psy15206 88 EGQSVQLECHAEGHPIPTISWRRENNAILPNG-QTIF--------TGSTLQIPRIT-KEDRGAYYCVAQNGIGRGARRKI 157 (232)
Q Consensus 88 ~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~-~~~~--------~~~~l~i~~~~-~~~~g~y~C~~~~~~~~~~~~~~ 157 (232)
.|..+.|.|.+.|.|.+.+.|++++..+.... ++.. ..+.|.|.++. .+|.|.|+|.+.|..|. ....+
T Consensus 22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~-~~~~i 100 (109)
T cd05773 22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGE-DSLDI 100 (109)
T ss_pred CCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCcc-CcEEE
Confidence 45789999999999999999999998875322 2211 13579999987 58999999999999988 56777
Q ss_pred EEEEEecc
Q psy15206 158 EVKVEFAP 165 (232)
Q Consensus 158 ~l~v~~~p 165 (232)
.|.+..+|
T Consensus 101 ~L~~~~~p 108 (109)
T cd05773 101 QLVSTSRP 108 (109)
T ss_pred EEEecCCC
Confidence 88777655
No 48
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.46 E-value=2.4e-12 Score=78.56 Aligned_cols=70 Identities=31% Similarity=0.590 Sum_probs=55.9
Q ss_pred cCCcEEEEeeeccCCCCeEEEEeCCeeeCCCC--cEEeeCCeEEECCCC-CCCCeEEEEEeEeCCCCceeeEE
Q psy15206 88 EGQSVQLECHAEGHPIPTISWRRENNAILPNG--QTIFTGSTLQIPRIT-KEDRGAYYCVAQNGIGRGARRKI 157 (232)
Q Consensus 88 ~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~--~~~~~~~~l~i~~~~-~~~~g~y~C~~~~~~~~~~~~~~ 157 (232)
+|+.+.|.|.+.|.|.|.+.|++++..+.... +....++.|.|.++. ..|.|.|.|.+.|..|...+..+
T Consensus 18 ~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S~~~ 90 (94)
T cd05848 18 DEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNSIGSILSREA 90 (94)
T ss_pred CCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcCCCeEEeccE
Confidence 47899999999999999999999998875322 334456789998875 69999999999999887544433
No 49
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.46 E-value=1.9e-12 Score=77.40 Aligned_cols=75 Identities=25% Similarity=0.367 Sum_probs=59.3
Q ss_pred CcEEEEeeeccCCCC--eEEEEeCCeeeCCCC---cE-E----eeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEE
Q psy15206 90 QSVQLECHAEGHPIP--TISWRRENNAILPNG---QT-I----FTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEV 159 (232)
Q Consensus 90 ~~~~l~C~~~~~~~~--~~~W~~~~~~~~~~~---~~-~----~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l 159 (232)
+.+.|.|.+.|.|.| .+.|++++..+.... ++ . ...+.|.|.+++..|.|.|+|.+.|..|. ....+.|
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~-~~~~~~L 79 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDS-ASASATL 79 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCC-EEEEEEE
Confidence 468999999998877 589999998764321 21 1 12468999999999999999999999887 6678888
Q ss_pred EEEecc
Q psy15206 160 KVEFAP 165 (232)
Q Consensus 160 ~v~~~p 165 (232)
.|..+|
T Consensus 80 ~V~~~P 85 (85)
T cd05854 80 VVRGPP 85 (85)
T ss_pred EEECCC
Confidence 887765
No 50
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.46 E-value=2.2e-12 Score=80.11 Aligned_cols=87 Identities=30% Similarity=0.665 Sum_probs=62.1
Q ss_pred cEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCC-----Cc-EEeeCCeEEE-----CCCCCCCCeEEE
Q psy15206 74 PVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPN-----GQ-TIFTGSTLQI-----PRITKEDRGAYY 142 (232)
Q Consensus 74 p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~-----~~-~~~~~~~l~i-----~~~~~~~~g~y~ 142 (232)
|.+.. .+....+.+|+.+.|.|.+.|.|.|.+.|+++|..+... .. .....+.+.+ ..+..+|.|.|+
T Consensus 2 P~i~~-~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~ 80 (100)
T cd07693 2 PRIVE-HPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV 80 (100)
T ss_pred CeEEe-cCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence 44443 566778889999999999999999999999999877541 11 1122232222 234689999999
Q ss_pred EEeEeCCCCceeeEEEEEE
Q psy15206 143 CVAQNGIGRGARRKIEVKV 161 (232)
Q Consensus 143 C~~~~~~~~~~~~~~~l~v 161 (232)
|.+.|..|...+..+.|.|
T Consensus 81 C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 81 CVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEccccceecceEEEEe
Confidence 9999998875656665554
No 51
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.46 E-value=2.6e-12 Score=77.97 Aligned_cols=78 Identities=28% Similarity=0.557 Sum_probs=61.6
Q ss_pred CCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEE----eeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeE
Q psy15206 81 PQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTI----FTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRK 156 (232)
Q Consensus 81 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~----~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~ 156 (232)
+....+..|+.+.|.|.+.|.|.|.+.|++++..+....... .....|.|.++..+|.|.|.|.+.|..|. ....
T Consensus 7 p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~-~~~~ 85 (90)
T cd04972 7 PNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQ-ANVS 85 (90)
T ss_pred CcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCc-eeEE
Confidence 445567889999999999999999999999998765433321 12347999999999999999999999887 4444
Q ss_pred EEE
Q psy15206 157 IEV 159 (232)
Q Consensus 157 ~~l 159 (232)
+.|
T Consensus 86 ~~L 88 (90)
T cd04972 86 VQV 88 (90)
T ss_pred EEE
Confidence 444
No 52
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.45 E-value=3.4e-12 Score=78.33 Aligned_cols=79 Identities=35% Similarity=0.642 Sum_probs=63.7
Q ss_pred ceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCC-CcEEe--eCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEE
Q psy15206 83 LSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPN-GQTIF--TGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEV 159 (232)
Q Consensus 83 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~-~~~~~--~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l 159 (232)
...+..|+.+.|.|.+.|.|.+.+.|++++..+... ..... ..+.|.|.++..+|.|.|+|.+.|..|. ....+.|
T Consensus 12 ~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~L 90 (95)
T cd05730 12 NATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGE-QEAEIHL 90 (95)
T ss_pred ceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCe-EEEEEEE
Confidence 446778999999999999999999999999877543 22222 2457999999999999999999999887 5566666
Q ss_pred EEE
Q psy15206 160 KVE 162 (232)
Q Consensus 160 ~v~ 162 (232)
.|.
T Consensus 91 ~V~ 93 (95)
T cd05730 91 KVF 93 (95)
T ss_pred EEE
Confidence 664
No 53
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.45 E-value=2e-12 Score=74.07 Aligned_cols=61 Identities=28% Similarity=0.599 Sum_probs=50.3
Q ss_pred CCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206 89 GQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGR 151 (232)
Q Consensus 89 g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~ 151 (232)
|+.+.|.|.+.|.|.|.+.|++++..+............|.|.++. |.|.|+|.+.|..|.
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~~~~~L~i~~~~--d~G~Y~C~A~N~~G~ 61 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPVGRNVLELTNIY--ESANYTCVAISSLGM 61 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccceecCccEEEEeccc--cCeeEEEEEEeCCCE
Confidence 5789999999999999999999998875544444445578888874 789999999999886
No 54
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.44 E-value=1.4e-12 Score=76.37 Aligned_cols=65 Identities=14% Similarity=0.308 Sum_probs=51.0
Q ss_pred cEEEeccceeeeeccCeEEEEEEeecCCCC-eEEEeeCCEEecCCCeEEEEEeccccCCceEEEEecC
Q psy15206 165 PIVTVQSTRIGQALHHDMDLDCHIEAYPHP-ILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 165 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~g~~~~~~~~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
|.+...|....+.+|++++|.|.+.+.|.+ .+.|+|||..+.... -.+.+.++ .+|+|.|+|.|.
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~~~-~~l~i~~~-~~dsG~Y~C~a~ 66 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLETTT-NSYRIRAA-NNDSGEYRCQTQ 66 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeeccC-CeEEEeec-ccCCEEeEEECC
Confidence 456677777889999999999999998764 699999999884322 23445555 899999999974
No 55
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.44 E-value=1.8e-12 Score=74.25 Aligned_cols=59 Identities=31% Similarity=0.508 Sum_probs=50.2
Q ss_pred EEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206 92 VQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGR 151 (232)
Q Consensus 92 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~ 151 (232)
+.|.|.+.|.|.|.+.|++++..+.... ....+..|.|.++..+|.|.|+|.+.|..|.
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~-~~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~ 59 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNH-TFKRGVHLTIYEVTEKDAGNYTVVLTNPITK 59 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCC-EEccCCEEEECcCCHHHCEEEEEEEEECCCc
Confidence 3689999999999999999999876543 2334567999999999999999999999886
No 56
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.44 E-value=2.2e-12 Score=76.10 Aligned_cols=75 Identities=23% Similarity=0.421 Sum_probs=58.4
Q ss_pred CCCceEeecCCcEEEEeeeccCCCC-eEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEE
Q psy15206 80 SPQLSVAKEGQSVQLECHAEGHPIP-TISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIE 158 (232)
Q Consensus 80 ~~~~~~~~~g~~~~l~C~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~ 158 (232)
.+....+..|+.+.|.|.+.|.|.| .+.|+++|..+.. ......+.|.|..+ .|.|.|.|.+.|..|...+....
T Consensus 4 ~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~--~~~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s~~a~ 79 (81)
T cd05749 4 EPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGD--PPAPSPSVLNVPGL--NETSKFSCEAHNAKGVTTSRTGT 79 (81)
T ss_pred CCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCC--CCCCCCCEEEEccc--cCCeEEEEEEEeccCcEEeeeEE
Confidence 4566788899999999999999999 7999999987743 12234567888877 47799999999998874444333
No 57
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.43 E-value=1.7e-12 Score=74.61 Aligned_cols=60 Identities=37% Similarity=0.713 Sum_probs=51.6
Q ss_pred EEEEeeeccCCCCeEEEEeCCeeeCCCCcEEe-eCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206 92 VQLECHAEGHPIPTISWRRENNAILPNGQTIF-TGSTLQIPRITKEDRGAYYCVAQNGIGR 151 (232)
Q Consensus 92 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~-~~~~l~i~~~~~~~~g~y~C~~~~~~~~ 151 (232)
+.|.|.+.|.|.|.+.|++++..+....+... ..+.|.|.++..+|.|.|.|.+.|..|.
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~ 61 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGY 61 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCc
Confidence 46899999999999999999988765544433 4678999999999999999999999887
No 58
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.43 E-value=4.1e-12 Score=77.28 Aligned_cols=79 Identities=25% Similarity=0.468 Sum_probs=62.1
Q ss_pred CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEe--eC---CeEEECCCCCCCCeEEEEEeEeCCCCcee
Q psy15206 80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF--TG---STLQIPRITKEDRGAYYCVAQNGIGRGAR 154 (232)
Q Consensus 80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~--~~---~~l~i~~~~~~~~g~y~C~~~~~~~~~~~ 154 (232)
.+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....++.. .. ++|.|.++..+|.|.|.|.+.|..|. ..
T Consensus 7 ~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~ 85 (92)
T cd05891 7 LPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGG-ET 85 (92)
T ss_pred CCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCc-ee
Confidence 35567888999999999999999999999999987755443322 11 37999999999999999999998887 43
Q ss_pred eEEEE
Q psy15206 155 RKIEV 159 (232)
Q Consensus 155 ~~~~l 159 (232)
..+.+
T Consensus 86 ~~~~v 90 (92)
T cd05891 86 VDVTV 90 (92)
T ss_pred eEEEE
Confidence 43333
No 59
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.43 E-value=2.4e-12 Score=78.99 Aligned_cols=81 Identities=33% Similarity=0.585 Sum_probs=62.3
Q ss_pred CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCc---EEeeCCeEEECCC-----CCCCCeEEEEEeEeC-CC
Q psy15206 80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQ---TIFTGSTLQIPRI-----TKEDRGAYYCVAQNG-IG 150 (232)
Q Consensus 80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~---~~~~~~~l~i~~~-----~~~~~g~y~C~~~~~-~~ 150 (232)
.+....+.+|+.+.|.|.+.|.|.+.+.|+++|..+..... ....++.+.|.++ ...|.|.|.|.+.|. .|
T Consensus 5 ~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G 84 (95)
T cd05722 5 EPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLG 84 (95)
T ss_pred CCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCccC
Confidence 45556777899999999999999999999999987754322 2334556777665 588999999999999 88
Q ss_pred CceeeEEEEE
Q psy15206 151 RGARRKIEVK 160 (232)
Q Consensus 151 ~~~~~~~~l~ 160 (232)
...+..+.+.
T Consensus 85 ~~~s~~~~l~ 94 (95)
T cd05722 85 SIVSRTARLT 94 (95)
T ss_pred cEEEeeeEEe
Confidence 7656665554
No 60
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.43 E-value=3.3e-12 Score=77.69 Aligned_cols=80 Identities=35% Similarity=0.688 Sum_probs=65.0
Q ss_pred CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEee----CCeEEECCCCCCCCeEEEEEeEeCCCCceee
Q psy15206 80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT----GSTLQIPRITKEDRGAYYCVAQNGIGRGARR 155 (232)
Q Consensus 80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~ 155 (232)
.+....+.+|+++.|.|.+.+.|.+.+.|++++..+....+.... ...|.|.++..+|.|.|+|.+.+..|. ...
T Consensus 6 ~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~-~~~ 84 (90)
T PF07679_consen 6 KPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGE-ATA 84 (90)
T ss_dssp ESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEE-EEE
T ss_pred ecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCE-EEE
Confidence 456778889999999999999999999999999888765554332 457999999999999999999998665 444
Q ss_pred EEEEE
Q psy15206 156 KIEVK 160 (232)
Q Consensus 156 ~~~l~ 160 (232)
.+.|.
T Consensus 85 ~~~l~ 89 (90)
T PF07679_consen 85 SVNLT 89 (90)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 44444
No 61
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.43 E-value=2.3e-12 Score=77.38 Aligned_cols=75 Identities=24% Similarity=0.371 Sum_probs=59.1
Q ss_pred CcEEEEeeeccCCCC--eEEEEeCCeeeCCCCc---E-----EeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEE
Q psy15206 90 QSVQLECHAEGHPIP--TISWRRENNAILPNGQ---T-----IFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEV 159 (232)
Q Consensus 90 ~~~~l~C~~~~~~~~--~~~W~~~~~~~~~~~~---~-----~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l 159 (232)
+++.|.|.+.+.|.+ .+.|+++|..+..... . ....+.|.|.+++..|+|.|+|.+.|..|. ......|
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~-~~~~~~l 79 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDS-LSASADL 79 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCc-EEEEEEE
Confidence 468999999998877 5789999987643221 1 123568999999999999999999998877 6677888
Q ss_pred EEEecc
Q psy15206 160 KVEFAP 165 (232)
Q Consensus 160 ~v~~~p 165 (232)
.|..+|
T Consensus 80 ~V~~pP 85 (85)
T cd04970 80 IVRGPP 85 (85)
T ss_pred EEECCC
Confidence 887765
No 62
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.43 E-value=1.6e-12 Score=75.62 Aligned_cols=68 Identities=34% Similarity=0.561 Sum_probs=52.7
Q ss_pred EEEEeeeccCCCCeEEEEeCCeeeCCC-CcEEee-CC----eEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEE
Q psy15206 92 VQLECHAEGHPIPTISWRRENNAILPN-GQTIFT-GS----TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVK 160 (232)
Q Consensus 92 ~~l~C~~~~~~~~~~~W~~~~~~~~~~-~~~~~~-~~----~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~ 160 (232)
+.|.|.+.|.|.|.+.|++++..+... .+.... .. .|.|.++..+|.|.|+|.+.|..|. ......|.
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~~a~L~ 74 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGI-VSCTARLD 74 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCE-EEEEEEEe
Confidence 468999999999999999999887543 233332 21 5999999999999999999999887 44444443
No 63
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.43 E-value=2.2e-12 Score=78.46 Aligned_cols=67 Identities=18% Similarity=0.444 Sum_probs=57.7
Q ss_pred cEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCC---------CeEEEEEeccccCCceEEEEecC
Q psy15206 165 PIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVND---------EYHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 165 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~---------~~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
|.+...+.+..+..|+++.|.|.+.+.|.+.+.|+++|..+..+ ....|.+.++...|+|.|.|.|.
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~ 76 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVAS 76 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEE
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEE
Confidence 56677788889999999999999999999999999999888754 34567777888899999999974
No 64
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.42 E-value=1.6e-12 Score=75.08 Aligned_cols=69 Identities=38% Similarity=0.707 Sum_probs=54.9
Q ss_pred EEEEeeeccCCCCeEEEEeCCeeeCCCCc-EEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEE
Q psy15206 92 VQLECHAEGHPIPTISWRRENNAILPNGQ-TIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161 (232)
Q Consensus 92 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v 161 (232)
+.|.|.+.|.|.|.+.|++++..+..... .....+.|.|.++...|.|.|.|.+.|..|. ....+.+.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGS-ARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCe-EEEEEEEEE
Confidence 46899999999999999999876644322 2234578999999999999999999999887 555555554
No 65
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.42 E-value=2.2e-12 Score=75.16 Aligned_cols=70 Identities=30% Similarity=0.520 Sum_probs=55.3
Q ss_pred EEEEeeeccCCCCeEEEEeCCeeeC--CCCcEEe-eCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEE
Q psy15206 92 VQLECHAEGHPIPTISWRRENNAIL--PNGQTIF-TGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161 (232)
Q Consensus 92 ~~l~C~~~~~~~~~~~W~~~~~~~~--~~~~~~~-~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v 161 (232)
+.|.|.+.|.|.|.+.|++++..+. ...+... .++.|.|.++..+|.|.|.|.+.|..|...+....+.|
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 4689999999999999999988764 2223322 35689999999999999999999998875555555554
No 66
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.42 E-value=4e-12 Score=74.18 Aligned_cols=69 Identities=29% Similarity=0.556 Sum_probs=55.1
Q ss_pred cEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEee----CCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEE
Q psy15206 91 SVQLECHAEGHPIPTISWRRENNAILPNGQTIFT----GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVK 160 (232)
Q Consensus 91 ~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~ 160 (232)
.+.|.|.+.|.|.|.+.|++++..+....+.... .+.|.|.++...|+|.|+|.+.|..|. ....+.+.
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~ 73 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGE-KSATINVK 73 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCcc-EEEEEEEE
Confidence 3689999999999999999999887544443322 357999999999999999999999887 54555443
No 67
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.41 E-value=4.9e-13 Score=75.63 Aligned_cols=50 Identities=26% Similarity=0.517 Sum_probs=43.4
Q ss_pred EEEEEEeecCCCCeEEEeeCCEEecC-CCeEEEEEeccccCCceEEEEecC
Q psy15206 182 MDLDCHIEAYPHPILYWAKDGEIVVN-DEYHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 182 ~~l~C~~~~~p~~~~~W~~~g~~~~~-~~~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
+.|.|.+.|.|.|.+.|+|||..+.. .....|.+.++..+|+|.|+|.|+
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~L~i~~v~~~D~G~YtC~a~ 51 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGKHSQHSLQIKDVTEASAGTYTLVLW 51 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECcccCCcCEEEECCCCHHHCEEEEEEEE
Confidence 47899999999999999999998863 244588888999999999999984
No 68
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.41 E-value=2.9e-12 Score=76.47 Aligned_cols=75 Identities=31% Similarity=0.563 Sum_probs=58.2
Q ss_pred EeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEe--eCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEE
Q psy15206 85 VAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF--TGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVK 160 (232)
Q Consensus 85 ~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~ 160 (232)
....|+.+.|.|.+.+.|.|.+.|++++..+........ ....|.|.++..+|+|.|.|.+.|..|. ....+.+.
T Consensus 5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~-~~~~~~v~ 81 (82)
T cd05856 5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGE-INATYKVD 81 (82)
T ss_pred eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCcc-EEEEEEEe
Confidence 445699999999999999999999999887644332222 2357999999999999999999998886 44444443
No 69
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.41 E-value=6.9e-12 Score=77.19 Aligned_cols=77 Identities=30% Similarity=0.625 Sum_probs=57.3
Q ss_pred ceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCC-----CcEEee----CCeEEECCCCCCCCeEEEEEeEeCCCCce
Q psy15206 83 LSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPN-----GQTIFT----GSTLQIPRITKEDRGAYYCVAQNGIGRGA 153 (232)
Q Consensus 83 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~-----~~~~~~----~~~l~i~~~~~~~~g~y~C~~~~~~~~~~ 153 (232)
......|+.+.|.|.+.|.|.|.++|++++..+... .+.... .+.|.|.++..+|.|.|.|.+.|..|. .
T Consensus 11 ~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~-~ 89 (97)
T cd05869 11 QTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQ-D 89 (97)
T ss_pred ceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCC-e
Confidence 334445899999999999999999999987655321 111111 247999999999999999999999887 4
Q ss_pred eeEEEEE
Q psy15206 154 RRKIEVK 160 (232)
Q Consensus 154 ~~~~~l~ 160 (232)
...+.|.
T Consensus 90 ~~~~~l~ 96 (97)
T cd05869 90 SQSMYLE 96 (97)
T ss_pred eEEEEEE
Confidence 4444443
No 70
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.40 E-value=9.4e-12 Score=76.75 Aligned_cols=79 Identities=29% Similarity=0.582 Sum_probs=59.2
Q ss_pred CCceEeecCCcEEEEeeeccCCCCeEEEEeC--CeeeCC-----CCcEEee----CCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206 81 PQLSVAKEGQSVQLECHAEGHPIPTISWRRE--NNAILP-----NGQTIFT----GSTLQIPRITKEDRGAYYCVAQNGI 149 (232)
Q Consensus 81 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~--~~~~~~-----~~~~~~~----~~~l~i~~~~~~~~g~y~C~~~~~~ 149 (232)
+....+.+|+.+.|.|.+.|.|.|.+.|++. +..+.. ..++... ...|.|.++..+|.|.|.|.+.|..
T Consensus 8 ~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 87 (98)
T cd05870 8 LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRI 87 (98)
T ss_pred eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccC
Confidence 4567888999999999999999999999994 333221 1122221 3479999999999999999999998
Q ss_pred CCceeeEEEEE
Q psy15206 150 GRGARRKIEVK 160 (232)
Q Consensus 150 ~~~~~~~~~l~ 160 (232)
|. ....+.|.
T Consensus 88 G~-~~~~~~l~ 97 (98)
T cd05870 88 GG-HQKSMYLD 97 (98)
T ss_pred Cc-ceeEEEEe
Confidence 87 43444443
No 71
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.40 E-value=4.1e-12 Score=74.63 Aligned_cols=70 Identities=30% Similarity=0.647 Sum_probs=54.0
Q ss_pred EEEEeeeccCCCCeEEEEeCCeeeCCCC-cEEe--eCCeEEECCCCCCCCeEEEEEeEeCCCCce-eeEEEEEE
Q psy15206 92 VQLECHAEGHPIPTISWRRENNAILPNG-QTIF--TGSTLQIPRITKEDRGAYYCVAQNGIGRGA-RRKIEVKV 161 (232)
Q Consensus 92 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~-~~~~--~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~-~~~~~l~v 161 (232)
+.|.|.+.|.|.|.+.|+++|..+.... .... ..+.|.|.++..+|.|.|.|.+.|..|... ...+.|.|
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v 74 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSI 74 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEE
Confidence 4789999999999999999998875432 2222 245899999999999999999999888632 34555554
No 72
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.40 E-value=1.5e-12 Score=80.24 Aligned_cols=61 Identities=21% Similarity=0.320 Sum_probs=50.3
Q ss_pred cceeeeeccCeEEEEEEeec-CCCCeEEEeeCCEEecCCCe--------------EEEEEeccccCCceEEEEecC
Q psy15206 171 STRIGQALHHDMDLDCHIEA-YPHPILYWAKDGEIVVNDEY--------------HSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 171 ~~~~~~~~g~~~~l~C~~~~-~p~~~~~W~~~g~~~~~~~~--------------~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
.....+..|+++.|.|.+.| .|+|.+.|+|||..+..... ..|.+..+..+|+|.|+|.|+
T Consensus 10 ~~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~ 85 (101)
T cd04975 10 NTTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLAS 85 (101)
T ss_pred CceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEE
Confidence 34567889999999999999 88899999999988764322 346677788899999999884
No 73
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.40 E-value=2.2e-12 Score=73.99 Aligned_cols=58 Identities=21% Similarity=0.352 Sum_probs=48.7
Q ss_pred EEEEeeeccCCCCeEEEEeCCeeeCCC-CcEEeeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206 92 VQLECHAEGHPIPTISWRRENNAILPN-GQTIFTGSTLQIPRITKEDRGAYYCVAQNGI 149 (232)
Q Consensus 92 ~~l~C~~~~~~~~~~~W~~~~~~~~~~-~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~ 149 (232)
+.|.|.+.|.|.|.+.|++++.++... ......+.+|.|.++..+|+|.|+|.+.+..
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~ 59 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIKQ 59 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEccc
Confidence 368999999999999999999887554 3344455689999999999999999999864
No 74
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.40 E-value=1.8e-12 Score=78.32 Aligned_cols=67 Identities=15% Similarity=0.251 Sum_probs=54.7
Q ss_pred cEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCC-----CeEEEEEeccccCCceEEEEecC
Q psy15206 165 PIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVND-----EYHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 165 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~-----~~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
+.+...+.+..+..|+.+.|.|.+.|.|.|.+.|+|++..+... ....|.+.++..+|+|.|.|.+.
T Consensus 2 ~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~ 73 (88)
T cd04968 2 SIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAE 73 (88)
T ss_pred CcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEEEeCCEEEECCCCcccCEEEEEEEE
Confidence 44556677778889999999999999999999999987765432 23567778888999999999874
No 75
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.39 E-value=6.3e-12 Score=73.34 Aligned_cols=68 Identities=29% Similarity=0.471 Sum_probs=52.7
Q ss_pred EEEEeeeccCCCCeEEEEeCCeeeCCC-CcEEe-eC----CeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEE
Q psy15206 92 VQLECHAEGHPIPTISWRRENNAILPN-GQTIF-TG----STLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVK 160 (232)
Q Consensus 92 ~~l~C~~~~~~~~~~~W~~~~~~~~~~-~~~~~-~~----~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~ 160 (232)
+.|.|.+.|.|.|.+.|++++..+... .+... .. ..|.|.+++.+|.|.|+|.+.|..|. ....+.|.
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~ 74 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGV-VSCNARLD 74 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCc-EEEEEEEe
Confidence 468999999999999999999887643 23322 11 16999999999999999999999887 44444443
No 76
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.39 E-value=6.6e-12 Score=76.18 Aligned_cols=74 Identities=28% Similarity=0.535 Sum_probs=58.5
Q ss_pred CCcEEEEeeeccCCCCeEEEEeCCeeeC--------CCCcEEe-eCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEE
Q psy15206 89 GQSVQLECHAEGHPIPTISWRRENNAIL--------PNGQTIF-TGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEV 159 (232)
Q Consensus 89 g~~~~l~C~~~~~~~~~~~W~~~~~~~~--------~~~~~~~-~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l 159 (232)
|+.+.|.|.+.|.|.|.+.|++++.... ...++.. ..+.|.|.++..+|.|.|.|.+.|..|. ....+.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l 79 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGS-ILTKAYL 79 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCc-eEEEEEE
Confidence 6789999999999999999999886431 1223332 3568999999999999999999999887 5566777
Q ss_pred EEEe
Q psy15206 160 KVEF 163 (232)
Q Consensus 160 ~v~~ 163 (232)
.|..
T Consensus 80 ~V~~ 83 (90)
T cd05726 80 EVTD 83 (90)
T ss_pred EEee
Confidence 7764
No 77
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.39 E-value=3e-12 Score=78.03 Aligned_cols=61 Identities=20% Similarity=0.375 Sum_probs=50.4
Q ss_pred cceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCC----------eEEEEEeccccCCceEEEEecC
Q psy15206 171 STRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDE----------YHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 171 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~----------~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
|....+.+|+++.|.|.+.|.|.|.+.|+|+|..+.... ...|.+.++..+|+|.|+|.|.
T Consensus 8 p~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 78 (92)
T cd05737 8 PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVK 78 (92)
T ss_pred CceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEE
Confidence 445678899999999999999999999999998765332 3457777888899999999874
No 78
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.38 E-value=6.7e-12 Score=76.39 Aligned_cols=77 Identities=21% Similarity=0.283 Sum_probs=58.7
Q ss_pred ceEeecCCcEEEEeeecc-----CCCCeEEEEeCCeeeCC----CCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCce
Q psy15206 83 LSVAKEGQSVQLECHAEG-----HPIPTISWRRENNAILP----NGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGA 153 (232)
Q Consensus 83 ~~~~~~g~~~~l~C~~~~-----~~~~~~~W~~~~~~~~~----~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~ 153 (232)
...+.+|+.+.|.|.+.+ .|.+.+.|++++..+.. ..+....++.|.|.++..+|+|.|.|.+.|..|. .
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~-~ 86 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYC-M 86 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCcc-E
Confidence 346668999999999988 57788999999866432 1233334678999999999999999999998776 4
Q ss_pred eeEEEEE
Q psy15206 154 RRKIEVK 160 (232)
Q Consensus 154 ~~~~~l~ 160 (232)
...+.|.
T Consensus 87 ~~~~~L~ 93 (94)
T cd05756 87 KVSISLT 93 (94)
T ss_pred EEEEEEE
Confidence 3444443
No 79
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.38 E-value=1.5e-12 Score=75.99 Aligned_cols=54 Identities=20% Similarity=0.496 Sum_probs=45.5
Q ss_pred ccCeEEEEEEeecCCCCeEEEeeCCEEecCCCe------EEEEEeccccCCceEEEEecC
Q psy15206 178 LHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEY------HSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 178 ~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~------~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
+|+.+.|.|.+.|.|.|.+.|+|+|..+....+ -.|.+.++...|+|.|.|.|.
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~ 60 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAV 60 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEE
Confidence 588999999999999999999999987754332 256777888899999999974
No 80
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.37 E-value=4.9e-12 Score=77.86 Aligned_cols=68 Identities=16% Similarity=0.328 Sum_probs=52.1
Q ss_pred ccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCC-----C---------eEEEEEeccccCCceEEEEe
Q psy15206 164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVND-----E---------YHSISNFGTSEGTTGSLQCK 229 (232)
Q Consensus 164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~-----~---------~~~~~~~~~~~~d~g~Y~C~ 229 (232)
.|.+...+.......|+.+.|.|.+.|.|.|.++|++++..+... . ...|.+.++..+|+|.|.|.
T Consensus 2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~ 81 (97)
T cd05869 2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCT 81 (97)
T ss_pred CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEE
Confidence 466665565555656899999999999999999999988655321 1 13577778888999999999
Q ss_pred cC
Q psy15206 230 VP 231 (232)
Q Consensus 230 ~~ 231 (232)
|.
T Consensus 82 A~ 83 (97)
T cd05869 82 AS 83 (97)
T ss_pred Ee
Confidence 74
No 81
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.36 E-value=8.8e-12 Score=72.79 Aligned_cols=64 Identities=23% Similarity=0.392 Sum_probs=50.6
Q ss_pred EEeeeccCCCCeEEEEeCCeeeCCCCcEE---------eeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEE
Q psy15206 94 LECHAEGHPIPTISWRRENNAILPNGQTI---------FTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIE 158 (232)
Q Consensus 94 l~C~~~~~~~~~~~W~~~~~~~~~~~~~~---------~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~ 158 (232)
+.|.+.|.|.|.++|+++|..+....+.. ...+.|.|.++...|.|.|+|.+.|..|. ....+.
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~-~~~~~~ 75 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGE-DEKNVS 75 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcc-cceEEE
Confidence 67889999999999999999886544321 11347999999999999999999999887 434443
No 82
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.36 E-value=2.4e-11 Score=74.77 Aligned_cols=78 Identities=32% Similarity=0.597 Sum_probs=59.6
Q ss_pred CCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCC-----CcEEee----CCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206 81 PQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPN-----GQTIFT----GSTLQIPRITKEDRGAYYCVAQNGIGR 151 (232)
Q Consensus 81 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~-----~~~~~~----~~~l~i~~~~~~~~g~y~C~~~~~~~~ 151 (232)
.....+.+|+.+.|.|.+.|.|.|.+.|++++..+... .+.... .+.|.|.++..+|.|.|.|.+.|..|.
T Consensus 8 ~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 87 (96)
T cd05732 8 LENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGG 87 (96)
T ss_pred cCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCC
Confidence 34567788999999999999999999999988554321 122211 247999999999999999999999887
Q ss_pred ceeeEEEE
Q psy15206 152 GARRKIEV 159 (232)
Q Consensus 152 ~~~~~~~l 159 (232)
....+.|
T Consensus 88 -~~~s~~l 94 (96)
T cd05732 88 -DQQSMYL 94 (96)
T ss_pred -cEEEEEE
Confidence 4444444
No 83
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.36 E-value=6.4e-12 Score=78.00 Aligned_cols=68 Identities=16% Similarity=0.323 Sum_probs=52.4
Q ss_pred ccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecC----CC-e---------EEEEE--eccccCCceEEE
Q psy15206 164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVN----DE-Y---------HSISN--FGTSEGTTGSLQ 227 (232)
Q Consensus 164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~----~~-~---------~~~~~--~~~~~~d~g~Y~ 227 (232)
+|.+...+.+..+..|+.+.|.|.+.|.|.|.+.|+|+|..+.. .. . +.+.+ ......|+|.|+
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~ 80 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV 80 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence 47777788888899999999999999999999999999987654 11 1 11111 122578999999
Q ss_pred EecC
Q psy15206 228 CKVP 231 (232)
Q Consensus 228 C~~~ 231 (232)
|.|.
T Consensus 81 C~a~ 84 (100)
T cd07693 81 CVAH 84 (100)
T ss_pred EEEE
Confidence 9874
No 84
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.36 E-value=5e-12 Score=77.99 Aligned_cols=59 Identities=20% Similarity=0.339 Sum_probs=49.7
Q ss_pred eeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCe---------------EEEEEeccccCCceEEEEecC
Q psy15206 173 RIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEY---------------HSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 173 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~---------------~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
...+..|+.+.|.|.+.|+|+|.+.|+|||..+..+.. ..|.+.++..+|+|.|+|.|.
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~ 85 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQ 85 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEE
Confidence 45677899999999999999999999999998764331 257778888899999999874
No 85
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.36 E-value=1.2e-11 Score=73.04 Aligned_cols=64 Identities=23% Similarity=0.394 Sum_probs=50.4
Q ss_pred EEeeeccCCCCeEEEEeCCeeeCCCCcEEe-----------eCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEE
Q psy15206 94 LECHAEGHPIPTISWRRENNAILPNGQTIF-----------TGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIE 158 (232)
Q Consensus 94 l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~-----------~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~ 158 (232)
+.|.+.|.|.|.++|+++|..+........ ..+.|.|.++...|.|.|+|.+.|..|. ....+.
T Consensus 3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~-~~~~~~ 77 (81)
T cd04971 3 IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQ-DSKSIS 77 (81)
T ss_pred EEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCC-eeeEEE
Confidence 678999999999999999998865443211 1346999999999999999999999887 434333
No 86
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.36 E-value=1.7e-11 Score=74.60 Aligned_cols=80 Identities=29% Similarity=0.479 Sum_probs=58.6
Q ss_pred CCCceEeecCCcEEEEeeeccCCCCeEEEEe-CCeeeCCCCcEE-eeC----CeEEECCCCCCCCeEEEEEeEeCCCCce
Q psy15206 80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRR-ENNAILPNGQTI-FTG----STLQIPRITKEDRGAYYCVAQNGIGRGA 153 (232)
Q Consensus 80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~-~~~~~~~~~~~~-~~~----~~l~i~~~~~~~~g~y~C~~~~~~~~~~ 153 (232)
.+....+..|+.+.|.|.+.|.| +.+.|++ ++..+....+.. ... +.|.|.++..+|.|.|+|.+.|..|...
T Consensus 6 ~p~~~~v~~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~ 84 (92)
T cd04977 6 VPSQGEISVGESKFFLCQVIGEP-KDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTES 84 (92)
T ss_pred ecCcEEECCCCeEEEEEEeEeeC-CeEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcc
Confidence 34556788899999999999986 4899997 455444322222 222 3799999999999999999999866545
Q ss_pred eeEEEEE
Q psy15206 154 RRKIEVK 160 (232)
Q Consensus 154 ~~~~~l~ 160 (232)
.+.+.|.
T Consensus 85 ~~sv~l~ 91 (92)
T cd04977 85 EATVNLK 91 (92)
T ss_pred eeEEEEE
Confidence 5555554
No 87
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.35 E-value=4.8e-12 Score=75.87 Aligned_cols=63 Identities=16% Similarity=0.350 Sum_probs=51.8
Q ss_pred eccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCe-----EEEEEeccccCCceEEEEecC
Q psy15206 169 VQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEY-----HSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 169 ~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~-----~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
..|.+..+..|+.+.|.|.+.|.|.|.+.|+|+|..+....+ -.+.+.++..+|+|.|+|.|.
T Consensus 4 ~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~ 71 (85)
T cd05728 4 KVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAE 71 (85)
T ss_pred ccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEE
Confidence 356677888999999999999999999999999988765432 245666778899999999874
No 88
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.35 E-value=7.9e-12 Score=76.29 Aligned_cols=67 Identities=15% Similarity=0.305 Sum_probs=48.5
Q ss_pred cEEEeccceeeee---ccCeEEEEEEeecCCCCeEEEeeCCEEecCCCe--E-----EEEEecc-ccCCceEEEEecC
Q psy15206 165 PIVTVQSTRIGQA---LHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEY--H-----SISNFGT-SEGTTGSLQCKVP 231 (232)
Q Consensus 165 p~~~~~~~~~~~~---~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~--~-----~~~~~~~-~~~d~g~Y~C~~~ 231 (232)
|.+...|.+..+. .|+.+.|.|.+.|.|.|.+.|+|+|..+..... + .+.+.+. ...|+|.|+|.|.
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~ 79 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLAT 79 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEE
Confidence 4555556655443 478999999999999999999999988764322 2 2334444 3589999999984
No 89
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.35 E-value=5.8e-12 Score=76.93 Aligned_cols=64 Identities=11% Similarity=0.288 Sum_probs=50.6
Q ss_pred EeccceeeeeccCeEEEEEEeecCCC-CeEEEee-CCEEecC-CCe----------EEEEEeccccCCceEEEEecC
Q psy15206 168 TVQSTRIGQALHHDMDLDCHIEAYPH-PILYWAK-DGEIVVN-DEY----------HSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 168 ~~~~~~~~~~~g~~~~l~C~~~~~p~-~~~~W~~-~g~~~~~-~~~----------~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
.+.|....+..|+.+.|.|.+.|.|. |.+.|++ +|..+.. +.+ ..|.+.++..+|+|.|+|.|+
T Consensus 4 ~~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~ 80 (96)
T cd05865 4 DIVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVS 80 (96)
T ss_pred EEeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEE
Confidence 44566667889999999999999995 6999998 7765443 222 457788889999999999985
No 90
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.35 E-value=1.1e-11 Score=74.32 Aligned_cols=59 Identities=19% Similarity=0.302 Sum_probs=49.3
Q ss_pred eeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCC-C---------eEEEEEeccccCCceEEEEecC
Q psy15206 173 RIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVND-E---------YHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 173 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~-~---------~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
.+.+..|+.+.|.|.+.|.|.|.+.|+|++..+... . ...|.+.++..+|+|.|.|.|.
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~ 72 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVT 72 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEE
Confidence 356778999999999999999999999999877532 2 2457777888899999999874
No 91
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.34 E-value=4.5e-12 Score=77.81 Aligned_cols=59 Identities=20% Similarity=0.482 Sum_probs=48.7
Q ss_pred eeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCC-C-------eEEEEEeccccCCceEEEEecC
Q psy15206 173 RIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVND-E-------YHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 173 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~-~-------~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
+..+..|+.+.|.|.+.|.|.|.+.|+++|..+... . ...|.+.+++.+|.|.|+|.|.
T Consensus 12 ~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 78 (95)
T cd05730 12 NATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAE 78 (95)
T ss_pred ceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEE
Confidence 346778999999999999999999999999876543 2 2356777888899999999874
No 92
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.34 E-value=1.8e-11 Score=72.08 Aligned_cols=63 Identities=35% Similarity=0.620 Sum_probs=52.5
Q ss_pred CCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEee----CCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206 89 GQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT----GSTLQIPRITKEDRGAYYCVAQNGIGR 151 (232)
Q Consensus 89 g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~~g~y~C~~~~~~~~ 151 (232)
|+++.|.|.+.|.|.|.+.|++++..+....+.... .+.|.|.++..+|.|.|.|.+.|..|.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 67 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGM 67 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCE
Confidence 678999999999999999999998776554443221 257999999999999999999998876
No 93
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.34 E-value=1.2e-11 Score=76.26 Aligned_cols=67 Identities=16% Similarity=0.314 Sum_probs=51.9
Q ss_pred ccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeC--CEEecC--------------CCeEEEEEeccccCCceEEE
Q psy15206 164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKD--GEIVVN--------------DEYHSISNFGTSEGTTGSLQ 227 (232)
Q Consensus 164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~--g~~~~~--------------~~~~~~~~~~~~~~d~g~Y~ 227 (232)
+|++.. +.+..+.+|++++|.|.+.|.|.|.+.|+|+ |..+.. .....|.+.+++.+|+|.|.
T Consensus 2 ~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~ 80 (98)
T cd05870 2 QPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYD 80 (98)
T ss_pred CCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEE
Confidence 456543 5567888999999999999999999999994 433321 12346778888999999999
Q ss_pred EecC
Q psy15206 228 CKVP 231 (232)
Q Consensus 228 C~~~ 231 (232)
|.|+
T Consensus 81 C~A~ 84 (98)
T cd05870 81 CEAA 84 (98)
T ss_pred EEEe
Confidence 9985
No 94
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.34 E-value=3.3e-11 Score=72.93 Aligned_cols=81 Identities=20% Similarity=0.349 Sum_probs=62.1
Q ss_pred CCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCC----CcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeE
Q psy15206 81 PQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPN----GQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRK 156 (232)
Q Consensus 81 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~----~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~ 156 (232)
+....+.+|+.+.|.|.+.+ +.+.+.|++++..+... .+.......|.|.++..+|.|.|.|.+.+..+......
T Consensus 3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~ 81 (89)
T cd04979 3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQTLAT 81 (89)
T ss_pred ceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecCccceeEeE
Confidence 34456778999999999876 77789999998776443 23444456799999999999999999998665545666
Q ss_pred EEEEEE
Q psy15206 157 IEVKVE 162 (232)
Q Consensus 157 ~~l~v~ 162 (232)
..+.|.
T Consensus 82 ~~l~V~ 87 (89)
T cd04979 82 YSLNVL 87 (89)
T ss_pred EEEEEe
Confidence 666654
No 95
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.33 E-value=4.7e-12 Score=73.32 Aligned_cols=53 Identities=25% Similarity=0.474 Sum_probs=44.2
Q ss_pred cCeEEEEEEeecCCCCeEEEeeCCEEecCCCeE------EEEEeccccCCceEEEEecC
Q psy15206 179 HHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYH------SISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 179 g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~~------~~~~~~~~~~d~g~Y~C~~~ 231 (232)
|+.+.|.|.+.|.|.|.|.|+|++..+..+.++ .|.+.++..+|+|.|.|.|.
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~ 59 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAE 59 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCCEEEECcCChhHCEEEEEEEE
Confidence 678999999999999999999999876544433 46667788899999999984
No 96
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.33 E-value=6.6e-12 Score=74.02 Aligned_cols=61 Identities=16% Similarity=0.383 Sum_probs=48.6
Q ss_pred eccceeeeeccCeEEEEEEeecCCCC-eEEEeeCCEEecC---CCeEEEEEeccccCCceEEEEecC
Q psy15206 169 VQSTRIGQALHHDMDLDCHIEAYPHP-ILYWAKDGEIVVN---DEYHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 169 ~~~~~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~g~~~~~---~~~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
..|.+..+..|+++.|.|.+.|.|.| .|.|+|||..+.. ...-.|.+.+. .|.|.|.|.|+
T Consensus 3 ~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~~~~~~s~L~i~~~--~d~g~Y~C~A~ 67 (81)
T cd05749 3 VEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDPPAPSPSVLNVPGL--NETSKFSCEAH 67 (81)
T ss_pred CCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCCCCCCCCEEEEccc--cCCeEEEEEEE
Confidence 35667788899999999999999999 7999999998753 22335555554 57899999984
No 97
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.33 E-value=1.1e-11 Score=75.23 Aligned_cols=61 Identities=16% Similarity=0.287 Sum_probs=50.4
Q ss_pred cceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCC---------CeEEEEEeccccCCceEEEEecC
Q psy15206 171 STRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVND---------EYHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 171 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~---------~~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
+.+..+..|+.+.|.|.+.|.|.|.+.|+++|..+... ....|.+.++...|.|.|+|.|.
T Consensus 7 p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~ 76 (90)
T cd04972 7 PNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAE 76 (90)
T ss_pred CcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEE
Confidence 44555789999999999999999999999999876432 22467788888999999999874
No 98
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.33 E-value=2.8e-11 Score=70.64 Aligned_cols=71 Identities=32% Similarity=0.644 Sum_probs=54.5
Q ss_pred CCcEEEEeeeccCCCCeEEEEeC-CeeeCCCCc-EEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEE
Q psy15206 89 GQSVQLECHAEGHPIPTISWRRE-NNAILPNGQ-TIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVK 160 (232)
Q Consensus 89 g~~~~l~C~~~~~~~~~~~W~~~-~~~~~~~~~-~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~ 160 (232)
|+.+.|.|.+.|.|.|.+.|+++ +..+....+ .....++|.|..+...|.|.|.|.+.|..|. ....+.+.
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~ 73 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGE-ATATVELH 73 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCe-EEEEEEEE
Confidence 67899999999999999999974 544433322 2334678999999999999999999998886 44444443
No 99
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.33 E-value=1.6e-11 Score=71.07 Aligned_cols=69 Identities=39% Similarity=0.666 Sum_probs=53.5
Q ss_pred EEEEeeeccCCCCeEEEEeCCeeeCCCCc-EEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEE
Q psy15206 92 VQLECHAEGHPIPTISWRRENNAILPNGQ-TIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161 (232)
Q Consensus 92 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v 161 (232)
+.|.|.+.|.|.|.+.|++++..+..... .....+.|.|.++..+|.|.|+|.+.|..|. ....+.+.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGS-ARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCce-EEEEEEEEE
Confidence 46899999999999999999877643222 1223468999999999999999999998886 445555544
No 100
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.33 E-value=1.9e-11 Score=71.53 Aligned_cols=69 Identities=32% Similarity=0.621 Sum_probs=52.5
Q ss_pred EEEEeeeccCCCCeEEEEeCCeeeCCC---CcEE--eeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEE
Q psy15206 92 VQLECHAEGHPIPTISWRRENNAILPN---GQTI--FTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161 (232)
Q Consensus 92 ~~l~C~~~~~~~~~~~W~~~~~~~~~~---~~~~--~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v 161 (232)
+.|.|.+.|.|.|.+.|++++...... .+.. ...+.|.|.++..+|.|.|.|.+.|..|. ....+.|.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~-~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGS-ISANATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCE-EEeeEEEEE
Confidence 468999999999999999998643211 1222 23468999999999999999999998887 555556554
No 101
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.32 E-value=1.9e-11 Score=72.27 Aligned_cols=69 Identities=32% Similarity=0.625 Sum_probs=52.6
Q ss_pred EEEEeeeccCCCCeEEEEeCCeeeC--------CCCcEE-eeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEE
Q psy15206 92 VQLECHAEGHPIPTISWRRENNAIL--------PNGQTI-FTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVK 160 (232)
Q Consensus 92 ~~l~C~~~~~~~~~~~W~~~~~~~~--------~~~~~~-~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~ 160 (232)
+.|.|.+.|.|.|.+.|++++.... ...+.. ..+++|.|.++..+|.|.|.|.+.|..|...++.+.|.
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~ 78 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLT 78 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEe
Confidence 4789999999999999999743211 112222 34578999999999999999999999887666666554
No 102
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.32 E-value=9.1e-12 Score=74.81 Aligned_cols=57 Identities=18% Similarity=0.385 Sum_probs=47.5
Q ss_pred eeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCC----------eEEEEEeccccCCceEEEEecC
Q psy15206 175 GQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDE----------YHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 175 ~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~----------~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
.+..|+.+.|.|.+.|.|.|.+.|+|+|..+..+. ...+.+.++..+|+|.|+|.|.
T Consensus 5 ~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~ 71 (85)
T cd05857 5 AVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 71 (85)
T ss_pred EcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEE
Confidence 46789999999999999999999999998876432 2356677788899999999874
No 103
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.32 E-value=6.6e-12 Score=72.97 Aligned_cols=50 Identities=20% Similarity=0.493 Sum_probs=41.1
Q ss_pred EEEEEEeecCCCCeEEEeeCCEEecCC-Ce----------EEEEEeccccCCceEEEEecC
Q psy15206 182 MDLDCHIEAYPHPILYWAKDGEIVVND-EY----------HSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 182 ~~l~C~~~~~p~~~~~W~~~g~~~~~~-~~----------~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
+.|.|.+.|.|.|.+.|+|+|..+..+ .+ ..|.+.++..+|+|.|+|.|.
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~ 61 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAV 61 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEE
Confidence 479999999999999999999887532 23 256677888899999999874
No 104
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.31 E-value=7.5e-12 Score=73.37 Aligned_cols=53 Identities=21% Similarity=0.460 Sum_probs=44.1
Q ss_pred cCeEEEEEEeecCCCCeEEEeeCCEEecCCC--------eEEEEEeccccCCceEEEEecC
Q psy15206 179 HHDMDLDCHIEAYPHPILYWAKDGEIVVNDE--------YHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 179 g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~--------~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
|+++.|.|.+.|.|.|.+.|+|+|..+.... ...|.+.++..+|+|.|.|.|.
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 61 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEAR 61 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEE
Confidence 6789999999999999999999998775321 2356777888899999999974
No 105
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.31 E-value=3.8e-12 Score=73.05 Aligned_cols=50 Identities=22% Similarity=0.321 Sum_probs=41.9
Q ss_pred EEEEEEeecCCCCeEEEeeCCEEecCC-C-----eEEEEEeccccCCceEEEEecC
Q psy15206 182 MDLDCHIEAYPHPILYWAKDGEIVVND-E-----YHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 182 ~~l~C~~~~~p~~~~~W~~~g~~~~~~-~-----~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
+.|.|.+.|.|.|.+.|+|+|..+... . ...|.+.++..+|+|.|+|.|+
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~ 56 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLG 56 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEE
Confidence 368999999999999999999887543 2 2367778889999999999986
No 106
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.31 E-value=2.1e-11 Score=74.44 Aligned_cols=67 Identities=18% Similarity=0.291 Sum_probs=48.3
Q ss_pred cEEEeccceeeeec---cCeEEEEEEeecCCCCeEEEeeCCEEecCC--CeE-----EEEEecc-ccCCceEEEEecC
Q psy15206 165 PIVTVQSTRIGQAL---HHDMDLDCHIEAYPHPILYWAKDGEIVVND--EYH-----SISNFGT-SEGTTGSLQCKVP 231 (232)
Q Consensus 165 p~~~~~~~~~~~~~---g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~--~~~-----~~~~~~~-~~~d~g~Y~C~~~ 231 (232)
|.+...|.+..+.+ |+++.|.|.+.|.|.|.|+|+++|..+... .++ .+.+.+. ...|+|.|+|.|+
T Consensus 2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~ 79 (94)
T cd05850 2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAI 79 (94)
T ss_pred CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEE
Confidence 45555666665544 468999999999999999999999887532 233 2333333 3489999999984
No 107
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.31 E-value=2.7e-11 Score=73.42 Aligned_cols=72 Identities=25% Similarity=0.501 Sum_probs=52.9
Q ss_pred CCcEEEEeeeccCCCCeEEEEeCC----eeeCCCCcE-------------EeeCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206 89 GQSVQLECHAEGHPIPTISWRREN----NAILPNGQT-------------IFTGSTLQIPRITKEDRGAYYCVAQNGIGR 151 (232)
Q Consensus 89 g~~~~l~C~~~~~~~~~~~W~~~~----~~~~~~~~~-------------~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~ 151 (232)
|+.+.|.|.+.|.|.|.++|++++ ..+...... ......|.|.++..+|.|.|.|.+.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 578999999999999999999853 222111100 012247899999999999999999999887
Q ss_pred ceeeEEEEEE
Q psy15206 152 GARRKIEVKV 161 (232)
Q Consensus 152 ~~~~~~~l~v 161 (232)
....+.|.|
T Consensus 81 -~~~sa~L~V 89 (90)
T cd04974 81 -SHHSAWLTV 89 (90)
T ss_pred -ccCCEEEEe
Confidence 445556654
No 108
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.31 E-value=1.5e-11 Score=74.82 Aligned_cols=61 Identities=18% Similarity=0.330 Sum_probs=49.9
Q ss_pred cceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCe----------EEEEEeccccCCceEEEEecC
Q psy15206 171 STRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEY----------HSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 171 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~----------~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
|..+.+.+|+++.|.|.+.|.|.|.+.|+|+|..+..+.+ ..|.+.++..+|+|.|+|.|.
T Consensus 8 p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 78 (92)
T cd05891 8 PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVK 78 (92)
T ss_pred CCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEE
Confidence 4456788999999999999999999999999887643322 356777788899999999874
No 109
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.30 E-value=1.4e-11 Score=70.51 Aligned_cols=51 Identities=18% Similarity=0.374 Sum_probs=41.0
Q ss_pred cCeEEEEEEeecCCCCeEEEeeCCEEecCCCe-----EEEEEeccccCCceEEEEecC
Q psy15206 179 HHDMDLDCHIEAYPHPILYWAKDGEIVVNDEY-----HSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 179 g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~-----~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
|+++.|.|.+.|.|.|.|.|+|+|..+....+ ..|.+.+. .|+|.|+|.|.
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~~~~~L~i~~~--~d~G~Y~C~A~ 56 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPVGRNVLELTNI--YESANYTCVAI 56 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccceecCccEEEEecc--ccCeeEEEEEE
Confidence 67899999999999999999999987764332 24566655 57899999984
No 110
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.30 E-value=6.3e-12 Score=71.97 Aligned_cols=50 Identities=18% Similarity=0.464 Sum_probs=42.4
Q ss_pred EEEEEEeecCCCCeEEEeeCCEEecCCCe----EEEEEeccccCCceEEEEecC
Q psy15206 182 MDLDCHIEAYPHPILYWAKDGEIVVNDEY----HSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 182 ~~l~C~~~~~p~~~~~W~~~g~~~~~~~~----~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
+.|.|.+.|.|.|.+.|+|||..+....+ ..|.+.++..+|+|.|+|.|.
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~ 54 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTFKRGVHLTIYEVTEKDAGNYTVVLT 54 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEccCCEEEECcCCHHHCEEEEEEEE
Confidence 36899999999999999999998865422 367788889999999999874
No 111
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.30 E-value=3.9e-11 Score=71.36 Aligned_cols=67 Identities=19% Similarity=0.502 Sum_probs=56.2
Q ss_pred CCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCC-CcEEeeCCeEEECCCCCCCCeEEEEEeEeC
Q psy15206 81 PQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPN-GQTIFTGSTLQIPRITKEDRGAYYCVAQNG 148 (232)
Q Consensus 81 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~-~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~ 148 (232)
|....+..|+++.|.|.+.+ +.+.+.|+++|..+... .+.....+.|.|.+++..|+|.|+|.+.+.
T Consensus 3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~ 70 (87)
T cd05873 3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLYRDGLLIFNASEADAGRYQCLSVEK 70 (87)
T ss_pred cceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEECCcEEEeCCCHHHCEEEEEEEEec
Confidence 55677889999999999754 56789999999988654 345566778999999999999999999875
No 112
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.29 E-value=5.2e-11 Score=69.78 Aligned_cols=67 Identities=28% Similarity=0.549 Sum_probs=49.9
Q ss_pred EEEEeeeccCCCCeEEEEeCCeeeCCC--CcEEe--eCCeEEECCCCCC----CCeEEEEEeEeCCCCceeeEEE
Q psy15206 92 VQLECHAEGHPIPTISWRRENNAILPN--GQTIF--TGSTLQIPRITKE----DRGAYYCVAQNGIGRGARRKIE 158 (232)
Q Consensus 92 ~~l~C~~~~~~~~~~~W~~~~~~~~~~--~~~~~--~~~~l~i~~~~~~----~~g~y~C~~~~~~~~~~~~~~~ 158 (232)
+.|.|.+.|.|.|.++|++++..+... ..... .+++|.|..+..+ |.|.|.|.+.|..|...+..+.
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~ 75 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIV 75 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEE
Confidence 468999999999999999999876322 22222 3578888877643 7899999999998875554443
No 113
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.29 E-value=1.8e-11 Score=75.37 Aligned_cols=67 Identities=16% Similarity=0.302 Sum_probs=51.8
Q ss_pred ccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCC--------------CeEEEEEeccccCCceEEEEe
Q psy15206 164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVND--------------EYHSISNFGTSEGTTGSLQCK 229 (232)
Q Consensus 164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~--------------~~~~~~~~~~~~~d~g~Y~C~ 229 (232)
+|.+. .+.+..+.+|+++.|.|.+.|.|.|.+.|++++..+... ....|.+.++...|+|.|.|.
T Consensus 2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 80 (96)
T cd05732 2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCE 80 (96)
T ss_pred Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEE
Confidence 35554 344567889999999999999999999999987544321 224677888889999999999
Q ss_pred cC
Q psy15206 230 VP 231 (232)
Q Consensus 230 ~~ 231 (232)
|.
T Consensus 81 a~ 82 (96)
T cd05732 81 AS 82 (96)
T ss_pred EE
Confidence 74
No 114
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.29 E-value=1.4e-11 Score=72.54 Aligned_cols=53 Identities=19% Similarity=0.459 Sum_probs=44.2
Q ss_pred cCeEEEEEEeecCCCCeEEEeeCCEEecCCC---------eEEEEEeccccCCceEEEEecC
Q psy15206 179 HHDMDLDCHIEAYPHPILYWAKDGEIVVNDE---------YHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 179 g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~---------~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
|+++.|.|.+.|.|.|.+.|++++..+.... ...|.+.++..+|+|.|.|.|.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 62 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAI 62 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEE
Confidence 6789999999999999999999987665433 3467777888899999999974
No 115
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.28 E-value=7.7e-12 Score=72.16 Aligned_cols=50 Identities=24% Similarity=0.527 Sum_probs=42.5
Q ss_pred EEEEEEeecCCCCeEEEeeCCEEecCC-----CeEEEEEeccccCCceEEEEecC
Q psy15206 182 MDLDCHIEAYPHPILYWAKDGEIVVND-----EYHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 182 ~~l~C~~~~~p~~~~~W~~~g~~~~~~-----~~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
+.|.|.+.|.|.|.+.|+|||..+..+ ....|.+.++..+|+|.|+|.|.
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~ 55 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKKSGHSLTIKDVTEEDAGNYTVVLT 55 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEEcCCCEEEECcCCHHHCEEEEEEEE
Confidence 468999999999999999999887643 23467788889999999999974
No 116
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.28 E-value=5.3e-11 Score=72.18 Aligned_cols=72 Identities=28% Similarity=0.546 Sum_probs=52.8
Q ss_pred CCcEEEEeeeccCCCCeEEEEeC----CeeeCCCCc--E-Ee----------eCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206 89 GQSVQLECHAEGHPIPTISWRRE----NNAILPNGQ--T-IF----------TGSTLQIPRITKEDRGAYYCVAQNGIGR 151 (232)
Q Consensus 89 g~~~~l~C~~~~~~~~~~~W~~~----~~~~~~~~~--~-~~----------~~~~l~i~~~~~~~~g~y~C~~~~~~~~ 151 (232)
|+.+.|.|.+.|.|.|.+.|++. +..+..... . .. ..+.|.|.+++.+|.|.|+|.+.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 67899999999999999999984 333322111 0 00 0147999999999999999999999887
Q ss_pred ceeeEEEEEE
Q psy15206 152 GARRKIEVKV 161 (232)
Q Consensus 152 ~~~~~~~l~v 161 (232)
....+.|.|
T Consensus 81 -~~~~a~L~V 89 (90)
T cd05858 81 -SHHSAWLTV 89 (90)
T ss_pred -ccceEEEEE
Confidence 445555554
No 117
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.28 E-value=9.5e-11 Score=71.23 Aligned_cols=65 Identities=32% Similarity=0.567 Sum_probs=52.3
Q ss_pred CCcEEEEeeeccCCCCeEEEEeCCeeeCC--CCcEEeeCCeEEECCCCC-CCCeEEEEEeEeCCCCce
Q psy15206 89 GQSVQLECHAEGHPIPTISWRRENNAILP--NGQTIFTGSTLQIPRITK-EDRGAYYCVAQNGIGRGA 153 (232)
Q Consensus 89 g~~~~l~C~~~~~~~~~~~W~~~~~~~~~--~~~~~~~~~~l~i~~~~~-~~~g~y~C~~~~~~~~~~ 153 (232)
+..+.|.|.+.|.|.+.++|++++..+.. ........+.|.|.++.. .|.|.|+|.+.|..|...
T Consensus 19 ~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~ 86 (91)
T cd04967 19 EGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNIVGTVL 86 (91)
T ss_pred CCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEcCCCEEE
Confidence 45799999999999999999999987732 233445567899988764 899999999999888633
No 118
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.28 E-value=3.4e-11 Score=73.24 Aligned_cols=67 Identities=18% Similarity=0.303 Sum_probs=47.9
Q ss_pred cEEEeccceeeeec---cCeEEEEEEeecCCCCeEEEeeCCEEecC-CCeE-----EEEEeccc-cCCceEEEEecC
Q psy15206 165 PIVTVQSTRIGQAL---HHDMDLDCHIEAYPHPILYWAKDGEIVVN-DEYH-----SISNFGTS-EGTTGSLQCKVP 231 (232)
Q Consensus 165 p~~~~~~~~~~~~~---g~~~~l~C~~~~~p~~~~~W~~~g~~~~~-~~~~-----~~~~~~~~-~~d~g~Y~C~~~ 231 (232)
|.+...|.+..+.+ |..+.|.|.+.|.|.|.++|+|++..+.. ..++ .|.+.+.. .+|+|.|+|.|+
T Consensus 2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~ 78 (93)
T cd05849 2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVS 78 (93)
T ss_pred CEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEECCEEEECcCCcCCCCEEEEEEEE
Confidence 45555555544333 45799999999999999999999987753 2232 34454543 589999999984
No 119
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.28 E-value=4e-11 Score=70.40 Aligned_cols=66 Identities=30% Similarity=0.621 Sum_probs=50.0
Q ss_pred EEEEeeeccCCCCeEEEEeCCeeeCCCC--cEE--eeCCeEEECCCCC----CCCeEEEEEeEeCCCCceeeEE
Q psy15206 92 VQLECHAEGHPIPTISWRRENNAILPNG--QTI--FTGSTLQIPRITK----EDRGAYYCVAQNGIGRGARRKI 157 (232)
Q Consensus 92 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~--~~~--~~~~~l~i~~~~~----~~~g~y~C~~~~~~~~~~~~~~ 157 (232)
+.|.|.+.|.|.|.++|++++..+.... +.. ...+.|.|..+.. +|.|.|.|.+.|..|...+..+
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~ 74 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISNEI 74 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEcccc
Confidence 4689999999999999999998764322 222 2357888888754 6899999999999887544433
No 120
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.27 E-value=2e-11 Score=72.08 Aligned_cols=59 Identities=14% Similarity=0.257 Sum_probs=47.7
Q ss_pred ceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCeEE-----EEEeccccCCceEEEEecC
Q psy15206 172 TRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHS-----ISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 172 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~~~-----~~~~~~~~~d~g~Y~C~~~ 231 (232)
....+..|+.+.|.|.+.+. .+.+.|+|||..+....++. |.+.++..+|+|.|.|.+.
T Consensus 2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~ 65 (79)
T cd04973 2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRITGEEVQIKDAVPRDSGLYACVTS 65 (79)
T ss_pred CcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEeCCEEEECCCChhhCEEEEEEEe
Confidence 34567789999999999886 56899999998877654443 5667778899999999973
No 121
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.27 E-value=2.1e-11 Score=70.42 Aligned_cols=51 Identities=25% Similarity=0.698 Sum_probs=40.4
Q ss_pred eEEEEEEeecCCCCeEEEeeCCEEecCCCeEE------EEEeccccCCceEEEEecC
Q psy15206 181 DMDLDCHIEAYPHPILYWAKDGEIVVNDEYHS------ISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 181 ~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~~~------~~~~~~~~~d~g~Y~C~~~ 231 (232)
++.|.|.+.|.|.|.+.|+|+|..+....++. +.+.++..+|+|.|+|.|.
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~ 57 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAE 57 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecCCEEEEcCCcccCEEEEEEEE
Confidence 47899999999999999999998776544332 3334677799999999974
No 122
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.27 E-value=3.7e-11 Score=72.70 Aligned_cols=63 Identities=13% Similarity=0.383 Sum_probs=49.7
Q ss_pred EeccceeeeeccCeEEEEEEeecCCCCeEEEee-CCEEecCCC---------eEEEEEeccccCCceEEEEecC
Q psy15206 168 TVQSTRIGQALHHDMDLDCHIEAYPHPILYWAK-DGEIVVNDE---------YHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 168 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~-~g~~~~~~~---------~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
.+.+.+..+..|+++.|.|.+.|.|. .+.|++ +|..+.... ...|.+.++..+|+|.|+|.|+
T Consensus 4 ~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~ 76 (92)
T cd05866 4 SISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQAT 76 (92)
T ss_pred EEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEE
Confidence 44566677889999999999999997 999998 465554332 2367777888899999999985
No 123
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.27 E-value=8.9e-11 Score=68.83 Aligned_cols=70 Identities=39% Similarity=0.703 Sum_probs=54.4
Q ss_pred EEEEeeeccCCCCeEEEEeCCeeeCCCC--cEEe--eCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEE
Q psy15206 92 VQLECHAEGHPIPTISWRRENNAILPNG--QTIF--TGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE 162 (232)
Q Consensus 92 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~--~~~~--~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~ 162 (232)
+.|.|.+.|.|.|.+.|++++..+.... +... ....|.|.++...|.|.|+|.+.|..|. ....+.|.|.
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~V~ 74 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGV-DEDISSLFVE 74 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCC-cceEEEEEEE
Confidence 3689999999999999999998765432 2222 2347999999999999999999998887 4456666654
No 124
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.27 E-value=2e-10 Score=70.80 Aligned_cols=71 Identities=28% Similarity=0.461 Sum_probs=56.1
Q ss_pred CCceEeecCCcEEEEeeeccCCCC-eEEEEeCCeeeCCC--CcEEee--------CCeEEECCCCCCC-CeEEEEEeEeC
Q psy15206 81 PQLSVAKEGQSVQLECHAEGHPIP-TISWRRENNAILPN--GQTIFT--------GSTLQIPRITKED-RGAYYCVAQNG 148 (232)
Q Consensus 81 ~~~~~~~~g~~~~l~C~~~~~~~~-~~~W~~~~~~~~~~--~~~~~~--------~~~l~i~~~~~~~-~g~y~C~~~~~ 148 (232)
+....+.+|+.+.|.|.+.|.|.| .+.|++++..+... .++... .+.|.|.++..+| .|.|.|.+.|.
T Consensus 8 ~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~ 87 (98)
T cd05758 8 EATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNS 87 (98)
T ss_pred CCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcC
Confidence 445667889999999999999998 59999999876432 233221 1379999999954 89999999999
Q ss_pred CCC
Q psy15206 149 IGR 151 (232)
Q Consensus 149 ~~~ 151 (232)
.|.
T Consensus 88 ~G~ 90 (98)
T cd05758 88 FGS 90 (98)
T ss_pred CCc
Confidence 887
No 125
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.27 E-value=1.5e-11 Score=72.00 Aligned_cols=53 Identities=21% Similarity=0.371 Sum_probs=42.8
Q ss_pred cCeEEEEEEeecCCCCeEEEeeCCEEecCC--C------eEEEEEeccccCCceEEEEecC
Q psy15206 179 HHDMDLDCHIEAYPHPILYWAKDGEIVVND--E------YHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 179 g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~--~------~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
|+.+.|.|.+.|.|.|+|.|+|+|..+... . .-.+.+.++...|+|.|+|.|.
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~ 61 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNAS 61 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEE
Confidence 678999999999999999999999877421 1 1245566778899999999874
No 126
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.27 E-value=2.2e-11 Score=73.73 Aligned_cols=60 Identities=17% Similarity=0.425 Sum_probs=49.2
Q ss_pred cceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCC------CeEEEEEeccccCCceEEEEecC
Q psy15206 171 STRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVND------EYHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 171 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~------~~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
+.++.+.+|++++|.|.+.|. .|.+.|+|+|..+... ....|.+.++..+|+|.|.|.|.
T Consensus 10 ~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 75 (91)
T cd05740 10 VGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPRLQLSNDNRTLTFNNVTRSDTGHYQCEAS 75 (91)
T ss_pred cCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCCCEEEeCCCCEEEECcCChhhCEEEEEEEE
Confidence 345678899999999999999 9999999999876432 22357777888899999999984
No 127
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.27 E-value=1.1e-10 Score=70.59 Aligned_cols=68 Identities=19% Similarity=0.403 Sum_probs=55.4
Q ss_pred eEeecCCcEEEEeeeccC-----CCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206 84 SVAKEGQSVQLECHAEGH-----PIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGR 151 (232)
Q Consensus 84 ~~~~~g~~~~l~C~~~~~-----~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~ 151 (232)
..+..|+...|.|...+. +.+.+.|++++..+.........++.|.|.++..+|+|.|+|.+.+..+.
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~ 77 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFVKGSKLLIQNVTEEDAGNYTCKLTFTHNG 77 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEecCCEEEEeeCChhhCEEEEEEEEecCCC
Confidence 456689999999987542 46789999999987655544446789999999999999999999987665
No 128
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.26 E-value=6.4e-11 Score=69.37 Aligned_cols=62 Identities=23% Similarity=0.487 Sum_probs=51.4
Q ss_pred CCCceEeecCCcEEEEeeeccCCC-CeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeC
Q psy15206 80 SPQLSVAKEGQSVQLECHAEGHPI-PTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNG 148 (232)
Q Consensus 80 ~~~~~~~~~g~~~~l~C~~~~~~~-~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~ 148 (232)
.|....+.+|+.+.|.|.+.+.|. ..+.|++++..+.. ..+.|.|.++ .+|+|.|+|.+.+.
T Consensus 6 ~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~------~~~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 6 DPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET------TTNSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred CCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec------cCCeEEEeec-ccCCEEeEEECCCC
Confidence 566677889999999999988775 46999999987622 3467899999 99999999999875
No 129
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.26 E-value=1.6e-11 Score=71.47 Aligned_cols=50 Identities=20% Similarity=0.559 Sum_probs=40.9
Q ss_pred EEEEEEeecCCCCeEEEeeCCEEecCC-Ce----------EEEEEeccccCCceEEEEecC
Q psy15206 182 MDLDCHIEAYPHPILYWAKDGEIVVND-EY----------HSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 182 ~~l~C~~~~~p~~~~~W~~~g~~~~~~-~~----------~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
+.|.|.+.|.|.|.+.|+|++..+..+ .+ ..|.+.++..+|+|.|+|.|.
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~ 61 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAK 61 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEE
Confidence 479999999999999999998877532 22 246677888899999999974
No 130
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.25 E-value=8.6e-11 Score=68.85 Aligned_cols=66 Identities=30% Similarity=0.623 Sum_probs=49.0
Q ss_pred EEEEeeeccCCCCeEEEEeCCeeeC--CCCcEEe--eCCeEEECCCC----CCCCeEEEEEeEeCCCCceeeEE
Q psy15206 92 VQLECHAEGHPIPTISWRRENNAIL--PNGQTIF--TGSTLQIPRIT----KEDRGAYYCVAQNGIGRGARRKI 157 (232)
Q Consensus 92 ~~l~C~~~~~~~~~~~W~~~~~~~~--~~~~~~~--~~~~l~i~~~~----~~~~g~y~C~~~~~~~~~~~~~~ 157 (232)
+.|.|.+.|.|.|.++|++++..+. ...+... .++.|.|..+. .+|.|.|.|.+.|..|...+..+
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~ 74 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSNKI 74 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEEEE
Confidence 3689999999999999999998652 2223322 35688888764 24689999999999887554443
No 131
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.25 E-value=3.6e-11 Score=69.89 Aligned_cols=53 Identities=23% Similarity=0.513 Sum_probs=44.2
Q ss_pred cCeEEEEEEeecCCCCeEEEeeCCEEecCCCe------EEEEEeccccCCceEEEEecC
Q psy15206 179 HHDMDLDCHIEAYPHPILYWAKDGEIVVNDEY------HSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 179 g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~------~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
|+++.|.|.+.|.|.|.+.|+|++..+....+ -.|.+.++...|+|.|+|.|.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~ 59 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAE 59 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCCeEEEccCChhHCEEEEEEEE
Confidence 67899999999999999999999988754432 246677888899999999874
No 132
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.24 E-value=4.9e-11 Score=74.85 Aligned_cols=70 Identities=19% Similarity=0.237 Sum_probs=49.8
Q ss_pred EeccEEEeccceeee----eccCeEEEEEEeecCCCCeEEEeeCCEEecCC-CeE-------------EEEEeccc-cCC
Q psy15206 162 EFAPIVTVQSTRIGQ----ALHHDMDLDCHIEAYPHPILYWAKDGEIVVND-EYH-------------SISNFGTS-EGT 222 (232)
Q Consensus 162 ~~~p~~~~~~~~~~~----~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~-~~~-------------~~~~~~~~-~~d 222 (232)
.++|.+...+....+ ..|..+.|.|.+.|.|.+.+.|+|||..+... .++ .|.+.++. .+|
T Consensus 2 ~~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D 81 (109)
T cd05773 2 RFAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALD 81 (109)
T ss_pred ccccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCC
Confidence 356666555442222 24678999999999999999999999877532 222 35555665 489
Q ss_pred ceEEEEecC
Q psy15206 223 TGSLQCKVP 231 (232)
Q Consensus 223 ~g~Y~C~~~ 231 (232)
.|.|+|.|.
T Consensus 82 ~G~Y~C~A~ 90 (109)
T cd05773 82 YALFTCTAH 90 (109)
T ss_pred CEEEEEEEE
Confidence 999999874
No 133
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.24 E-value=1e-10 Score=69.54 Aligned_cols=71 Identities=27% Similarity=0.570 Sum_probs=52.7
Q ss_pred CCcEEEEeeeccCCCCeEEEEeCCe--e-e--CCCC---cE-EeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEE
Q psy15206 89 GQSVQLECHAEGHPIPTISWRRENN--A-I--LPNG---QT-IFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEV 159 (232)
Q Consensus 89 g~~~~l~C~~~~~~~~~~~W~~~~~--~-~--~~~~---~~-~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l 159 (232)
|+.+.|.|.+.|.|.|.+.|++++. . . .... .. ....+.|.|.++..+|.|.|.|.+.|..|. ....+.|
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l 79 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGL-LRANFPL 79 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCce-EEEEEEE
Confidence 6789999999999999999999742 1 1 1110 11 123467999999999999999999999887 5455554
Q ss_pred E
Q psy15206 160 K 160 (232)
Q Consensus 160 ~ 160 (232)
.
T Consensus 80 ~ 80 (81)
T cd05765 80 S 80 (81)
T ss_pred e
Confidence 4
No 134
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.24 E-value=8.2e-11 Score=71.53 Aligned_cols=64 Identities=16% Similarity=0.335 Sum_probs=50.0
Q ss_pred EEeccceeeeeccCeEEEEEEeecCCCCeEEEee-CCEEecC----------CCeEEEEEeccccCCceEEEEecC
Q psy15206 167 VTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAK-DGEIVVN----------DEYHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 167 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~-~g~~~~~----------~~~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
+.+.|....+..|+++.|.|.+.|.|. .+.|++ +|..+.. .....|.+.+++.+|+|.|+|.|+
T Consensus 3 v~v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~ 77 (92)
T cd04977 3 VDIVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVAT 77 (92)
T ss_pred EEEecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEE
Confidence 345566678889999999999999974 999997 5554432 123468888899999999999985
No 135
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.24 E-value=6.5e-11 Score=69.28 Aligned_cols=60 Identities=27% Similarity=0.530 Sum_probs=48.6
Q ss_pred EEEEeeecc-CCCCeEEEEeCCeeeCCCCcEE---e----eCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206 92 VQLECHAEG-HPIPTISWRRENNAILPNGQTI---F----TGSTLQIPRITKEDRGAYYCVAQNGIGR 151 (232)
Q Consensus 92 ~~l~C~~~~-~~~~~~~W~~~~~~~~~~~~~~---~----~~~~l~i~~~~~~~~g~y~C~~~~~~~~ 151 (232)
+.|.|.+.| .|.+.+.|++++..+....... . ..+.|.|.++..+|.|.|.|.+.|..|.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~ 68 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGN 68 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCc
Confidence 368999999 8999999999998775433211 1 2357999999999999999999998886
No 136
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.24 E-value=1.1e-10 Score=69.83 Aligned_cols=71 Identities=24% Similarity=0.381 Sum_probs=52.2
Q ss_pred CCcEEEEeeeccC--CCCeEEEEeCCeeeCCCCc---------EEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEE
Q psy15206 89 GQSVQLECHAEGH--PIPTISWRRENNAILPNGQ---------TIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKI 157 (232)
Q Consensus 89 g~~~~l~C~~~~~--~~~~~~W~~~~~~~~~~~~---------~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~ 157 (232)
|+.+.|.|.+.+. |.+.+.|++++........ .....+.|.|.+++.+|+|.|.|.+.|..+. .....
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~-~~~s~ 79 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMD-QKEST 79 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCc-eEEEE
Confidence 6789999999998 7788999987765421110 1112357999999999999999999998776 43444
Q ss_pred EEE
Q psy15206 158 EVK 160 (232)
Q Consensus 158 ~l~ 160 (232)
.+.
T Consensus 80 ~v~ 82 (84)
T cd05742 80 KVN 82 (84)
T ss_pred EEE
Confidence 443
No 137
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.23 E-value=5.2e-11 Score=73.01 Aligned_cols=63 Identities=22% Similarity=0.329 Sum_probs=47.5
Q ss_pred eccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCe--E------EEEEecc-----ccCCceEEEEecC
Q psy15206 169 VQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEY--H------SISNFGT-----SEGTTGSLQCKVP 231 (232)
Q Consensus 169 ~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~--~------~~~~~~~-----~~~d~g~Y~C~~~ 231 (232)
..|.+..+..|+++.|.|.+.|.|.|.+.|+|||..+..... + .+.+.+. ...|.|.|+|.|.
T Consensus 4 ~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~ 79 (95)
T cd05722 4 SEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQ 79 (95)
T ss_pred ECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEE
Confidence 456666778899999999999999999999999988763321 1 1222222 4689999999874
No 138
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.23 E-value=5.6e-11 Score=71.58 Aligned_cols=53 Identities=15% Similarity=0.360 Sum_probs=42.6
Q ss_pred cCeEEEEEEeecCCCCeEEEeeCCEEecCC-CeE-------------EEEEeccccCCceEEEEecC
Q psy15206 179 HHDMDLDCHIEAYPHPILYWAKDGEIVVND-EYH-------------SISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 179 g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~-~~~-------------~~~~~~~~~~d~g~Y~C~~~ 231 (232)
|+.+.|.|.+.|.|++.+.|+|++..+..+ .++ .|.+.++...|+|.|+|.|.
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~ 67 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAI 67 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEE
Confidence 788999999999999999999999776432 222 35556667799999999984
No 139
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.23 E-value=3.3e-11 Score=70.74 Aligned_cols=53 Identities=21% Similarity=0.365 Sum_probs=44.0
Q ss_pred cCeEEEEEEeecCCCCeEEEeeCCEEecCCC--------eEEEEEeccccCCceEEEEecC
Q psy15206 179 HHDMDLDCHIEAYPHPILYWAKDGEIVVNDE--------YHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 179 g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~--------~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
|+.+.|.|.+.|.|.|.+.|+++|..+.... ...|.+.++..+|+|.|+|.|.
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~ 61 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNAS 61 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEE
Confidence 6789999999999999999999998765322 2456677788899999999874
No 140
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.22 E-value=5.9e-11 Score=71.44 Aligned_cols=61 Identities=21% Similarity=0.385 Sum_probs=49.5
Q ss_pred cceeeeeccCeEEEEEEe-ecCCCCeEEEeeCCEEecCC-Ce------EEEEEeccccCCceEEEEecC
Q psy15206 171 STRIGQALHHDMDLDCHI-EAYPHPILYWAKDGEIVVND-EY------HSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 171 ~~~~~~~~g~~~~l~C~~-~~~p~~~~~W~~~g~~~~~~-~~------~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
|.+..+..|+++.|.|.+ .|.|.|.+.|+|+|..+... .+ ..|.+.++...|+|.|+|.+.
T Consensus 3 p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 71 (86)
T cd05724 3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVAT 71 (86)
T ss_pred CccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEE
Confidence 456677899999999998 79999999999999876542 21 256777888899999999874
No 141
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.22 E-value=4e-11 Score=70.41 Aligned_cols=50 Identities=22% Similarity=0.533 Sum_probs=40.9
Q ss_pred EEEEEEeecCCCCeEEEeeCCEEecCCC--------eEEEEEeccccCCceEEEEecC
Q psy15206 182 MDLDCHIEAYPHPILYWAKDGEIVVNDE--------YHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 182 ~~l~C~~~~~p~~~~~W~~~g~~~~~~~--------~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
++|.|.+.|.|.|.+.|+|+|..+.... ...|.+.++..+|+|.|.|.|.
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 58 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAH 58 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEE
Confidence 4799999999999999999998875432 1256677788899999999874
No 142
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.22 E-value=5.1e-11 Score=69.48 Aligned_cols=50 Identities=18% Similarity=0.482 Sum_probs=41.2
Q ss_pred EEEEEEeecCCCCeEEEeeCCEEecCC-C----------eEEEEEeccccCCceEEEEecC
Q psy15206 182 MDLDCHIEAYPHPILYWAKDGEIVVND-E----------YHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 182 ~~l~C~~~~~p~~~~~W~~~g~~~~~~-~----------~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
+.|.|.+.|.|.|.+.|+|+|..+..+ . ...|.+.++...|+|.|+|.|.
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 61 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAV 61 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEE
Confidence 479999999999999999999877532 2 2357777888899999999874
No 143
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.22 E-value=2.4e-11 Score=69.73 Aligned_cols=50 Identities=20% Similarity=0.461 Sum_probs=41.3
Q ss_pred EEEEEEeecCCCCeEEEeeCCEEecCCCeE------EEEEeccccCCceEEEEecC
Q psy15206 182 MDLDCHIEAYPHPILYWAKDGEIVVNDEYH------SISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 182 ~~l~C~~~~~p~~~~~W~~~g~~~~~~~~~------~~~~~~~~~~d~g~Y~C~~~ 231 (232)
+.|.|.+.|.|.|.+.|+|+|..+....++ .|.+.++...|+|.|+|.|.
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 56 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVAR 56 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEECCCCEEEECcCChhhCEEEEEEEE
Confidence 479999999999999999999877644332 46677888899999999974
No 144
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.22 E-value=4.6e-11 Score=69.76 Aligned_cols=48 Identities=19% Similarity=0.379 Sum_probs=39.5
Q ss_pred EEEEeecCCCCeEEEeeCCEEecCCCe--------------EEEEEeccccCCceEEEEecC
Q psy15206 184 LDCHIEAYPHPILYWAKDGEIVVNDEY--------------HSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 184 l~C~~~~~p~~~~~W~~~g~~~~~~~~--------------~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
+.|.+.|.|.|.++|+|||..+..+.+ ..|.+..++..|+|.|+|.|.
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~ 64 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAK 64 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEE
Confidence 678999999999999999998864432 246667778899999999984
No 145
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.21 E-value=9.1e-11 Score=69.77 Aligned_cols=73 Identities=26% Similarity=0.440 Sum_probs=56.1
Q ss_pred eEeecCCcEEEEeeecc-CCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEE
Q psy15206 84 SVAKEGQSVQLECHAEG-HPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVK 160 (232)
Q Consensus 84 ~~~~~g~~~~l~C~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~ 160 (232)
..+.+|+++.|.|.+.+ .+.+.+.|++++..+.. ......|.|.+++.+|+|.|+|.+.+..+...+..+.+.
T Consensus 9 ~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~----~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~~i~ 82 (83)
T cd05753 9 RVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKY----SHSNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPVSIT 82 (83)
T ss_pred ceecCCCCEEEEeeCCCCCcceEEEEEECCeEccc----cCCCceEEECccCHHHCEEEEEEEEeCCceecCCCEEEE
Confidence 46778999999999854 55667999999976532 123457999999999999999999998776555554443
No 146
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.21 E-value=3.2e-10 Score=68.01 Aligned_cols=70 Identities=23% Similarity=0.479 Sum_probs=56.3
Q ss_pred CCCceEeecCCcEEEEeeecc-CCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206 80 SPQLSVAKEGQSVQLECHAEG-HPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGR 151 (232)
Q Consensus 80 ~~~~~~~~~g~~~~l~C~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~ 151 (232)
.+....+.+|+.+.|.|.+.+ .+.+.+.|++++..+.. +....++.|.|.+++.+|+|.|.|.+.|..|.
T Consensus 7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~--~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~ 77 (85)
T cd05754 7 EPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPS--RAMDFNGILTIRNVQLSDAGTYVCTGSNMLDT 77 (85)
T ss_pred CCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCC--cccccCCEEEECCCCHHHCEEEEEEEeccCCe
Confidence 455667788999999999875 67788999998866432 22334578999999999999999999998776
No 147
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.19 E-value=4.7e-10 Score=66.92 Aligned_cols=73 Identities=27% Similarity=0.512 Sum_probs=52.9
Q ss_pred CCcEEEEeeeccCCCCeEEEEeCCeeeCCCC----cE----EeeCCeEEECCCCCCCCeEEEEEeEeCCC-CceeeEEEE
Q psy15206 89 GQSVQLECHAEGHPIPTISWRRENNAILPNG----QT----IFTGSTLQIPRITKEDRGAYYCVAQNGIG-RGARRKIEV 159 (232)
Q Consensus 89 g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~----~~----~~~~~~l~i~~~~~~~~g~y~C~~~~~~~-~~~~~~~~l 159 (232)
|+++.|.|.+.+.|.+.+.|+++++...... .. ....+.|.|.+++.+|+|.|.|.+.+..+ ....+.+.+
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i 80 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI 80 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence 6889999999998889999998775432111 00 11245799999999999999999998654 234555555
Q ss_pred EE
Q psy15206 160 KV 161 (232)
Q Consensus 160 ~v 161 (232)
.|
T Consensus 81 ~V 82 (84)
T cd05861 81 TV 82 (84)
T ss_pred EE
Confidence 55
No 148
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.19 E-value=6.4e-11 Score=70.62 Aligned_cols=57 Identities=19% Similarity=0.419 Sum_probs=47.5
Q ss_pred eeeccCeEEEEEEeecCCCCeEEEeeCCEEecC-------CCeEEEEEeccccCCceEEEEecC
Q psy15206 175 GQALHHDMDLDCHIEAYPHPILYWAKDGEIVVN-------DEYHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 175 ~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~-------~~~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
....|+++.|.|.+.|.|.|.+.|+|+|..+.. .....|.+.++..+|+|.|+|.+.
T Consensus 5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~ 68 (82)
T cd05856 5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVS 68 (82)
T ss_pred eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEE
Confidence 456799999999999999999999999876532 233678888889999999999874
No 149
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.18 E-value=1.2e-10 Score=67.88 Aligned_cols=51 Identities=20% Similarity=0.363 Sum_probs=42.1
Q ss_pred eEEEEEEeecCCCCeEEEeeCCEEecCCC---------eEEEEEeccccCCceEEEEecC
Q psy15206 181 DMDLDCHIEAYPHPILYWAKDGEIVVNDE---------YHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 181 ~~~l~C~~~~~p~~~~~W~~~g~~~~~~~---------~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
.+.|.|.+.|.|.|.+.|+|+|..+..+. ...|.+.++...|+|.|+|.|.
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 60 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLK 60 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEE
Confidence 36899999999999999999998874333 3456677888899999999874
No 150
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.18 E-value=1.3e-10 Score=69.14 Aligned_cols=60 Identities=20% Similarity=0.383 Sum_probs=47.7
Q ss_pred cceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCC-CeE-----EEEEeccccCCceEEEEecC
Q psy15206 171 STRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVND-EYH-----SISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 171 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~-~~~-----~~~~~~~~~~d~g~Y~C~~~ 231 (232)
|.+..+..|+++.|.|.+.+ +.+.+.|++||..+..+ .++ .|.+.+++..|+|.|+|.+.
T Consensus 3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~~~~L~I~nv~~~DsG~Y~C~a~ 68 (87)
T cd05873 3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLYRDGLLIFNASEADAGRYQCLSV 68 (87)
T ss_pred cceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEECCcEEEeCCCHHHCEEEEEEEE
Confidence 55677889999999999854 67899999999987654 222 35556788899999999874
No 151
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.17 E-value=1.2e-10 Score=68.78 Aligned_cols=49 Identities=14% Similarity=0.360 Sum_probs=40.1
Q ss_pred EEEEEeecCCCCeEEEeeCCEEecCCCe----------------EEEEEeccccCCceEEEEecC
Q psy15206 183 DLDCHIEAYPHPILYWAKDGEIVVNDEY----------------HSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 183 ~l~C~~~~~p~~~~~W~~~g~~~~~~~~----------------~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
.+.|.+.|.|.|.++|+|||..+..+.. ..|.+.++...|+|.|+|.|.
T Consensus 2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~ 66 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVAS 66 (81)
T ss_pred eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEE
Confidence 3689999999999999999988765432 246677788899999999874
No 152
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.17 E-value=9.8e-10 Score=65.90 Aligned_cols=75 Identities=27% Similarity=0.525 Sum_probs=56.9
Q ss_pred eEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEe-----eCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEE
Q psy15206 84 SVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF-----TGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIE 158 (232)
Q Consensus 84 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~ 158 (232)
..+..|+.+.|.|.+.+.|.+.+.|++++..+........ ....|.|.++..+|.|.|.|.+.+..|. ....+.
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~-~~~~~~ 82 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGS-INHTYK 82 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCce-EEEEEE
Confidence 3455799999999999988889999999887653322211 1236889999999999999999998776 444444
Q ss_pred E
Q psy15206 159 V 159 (232)
Q Consensus 159 l 159 (232)
+
T Consensus 83 l 83 (85)
T cd05729 83 V 83 (85)
T ss_pred E
Confidence 4
No 153
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.16 E-value=3e-10 Score=69.14 Aligned_cols=60 Identities=15% Similarity=0.243 Sum_probs=48.3
Q ss_pred ceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEe--------c----------CCCeEEEEEeccccCCceEEEEecC
Q psy15206 172 TRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIV--------V----------NDEYHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 172 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~--------~----------~~~~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
.+..+..|+++.|.|.+.+.|.+.+.|++++..+ . ....+.|.+.++..+|+|.|+|.+.
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~ 82 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIF 82 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEE
Confidence 4567889999999999999999999998876421 0 1124688889999999999999874
No 154
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.16 E-value=1.2e-10 Score=67.75 Aligned_cols=50 Identities=20% Similarity=0.347 Sum_probs=39.8
Q ss_pred EEEEEEeecCCCCeEEEeeCCEEec--CCCe------EEEEEeccccCCceEEEEecC
Q psy15206 182 MDLDCHIEAYPHPILYWAKDGEIVV--NDEY------HSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 182 ~~l~C~~~~~p~~~~~W~~~g~~~~--~~~~------~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
++|.|.+.|.|.|.+.|+|++..+. ...+ -.|.+.++...|+|.|.|.|.
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~ 58 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVAT 58 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEE
Confidence 4799999999999999999988765 2222 245666777899999999874
No 155
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.16 E-value=4.2e-10 Score=68.36 Aligned_cols=67 Identities=18% Similarity=0.336 Sum_probs=47.3
Q ss_pred cEEEeccceeeee---ccCeEEEEEEeecCCCCeEEEeeCCEEecCC--CeE-----EEEEeccc-cCCceEEEEecC
Q psy15206 165 PIVTVQSTRIGQA---LHHDMDLDCHIEAYPHPILYWAKDGEIVVND--EYH-----SISNFGTS-EGTTGSLQCKVP 231 (232)
Q Consensus 165 p~~~~~~~~~~~~---~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~--~~~-----~~~~~~~~-~~d~g~Y~C~~~ 231 (232)
|.+...|.+..+. .|+.+.|.|.+.|.|.|.++|+|+|..+... ..+ .|.+.+.. ..|+|.|+|.|.
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~ 79 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLAS 79 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEE
Confidence 4455555554433 3467999999999999999999999887421 222 34444454 489999999985
No 156
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.16 E-value=3.3e-10 Score=69.82 Aligned_cols=67 Identities=19% Similarity=0.304 Sum_probs=50.1
Q ss_pred ccEEEeccceeeeeccCeEEEEEEeecCCCC-eEEEeeCCEEecCC--CeE-------------EEEEeccccCC-ceEE
Q psy15206 164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHP-ILYWAKDGEIVVND--EYH-------------SISNFGTSEGT-TGSL 226 (232)
Q Consensus 164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~g~~~~~~--~~~-------------~~~~~~~~~~d-~g~Y 226 (232)
||.+. .+....+..|+.+.|.|.+.|.|.| .|.|++++..+... .++ .|.+.++..+| .|.|
T Consensus 2 pp~i~-~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y 80 (98)
T cd05758 2 PPIIT-SEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSY 80 (98)
T ss_pred CCeEc-CCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeE
Confidence 45553 3455667899999999999999999 59999999876532 233 45566677644 8999
Q ss_pred EEecC
Q psy15206 227 QCKVP 231 (232)
Q Consensus 227 ~C~~~ 231 (232)
.|.|.
T Consensus 81 ~C~A~ 85 (98)
T cd05758 81 NCTAW 85 (98)
T ss_pred EEEEE
Confidence 99874
No 157
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.15 E-value=6.2e-11 Score=68.44 Aligned_cols=50 Identities=18% Similarity=0.391 Sum_probs=40.4
Q ss_pred EEEEEEeecCCCCeEEEeeCCEEecCC------CeEEEEEeccccCCceEEEEecC
Q psy15206 182 MDLDCHIEAYPHPILYWAKDGEIVVND------EYHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 182 ~~l~C~~~~~p~~~~~W~~~g~~~~~~------~~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
+.|.|.+.|.|.|.+.|+|++..+..+ ....|.+.++...|+|.|.|.|.
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 56 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAE 56 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEE
Confidence 479999999999999999998765432 22366677888899999999974
No 158
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.14 E-value=1.4e-09 Score=66.25 Aligned_cols=68 Identities=21% Similarity=0.396 Sum_probs=52.6
Q ss_pred CCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeC--------CCCcEEe-----eCCeEEECCCCCCCCeEEEEEeEe
Q psy15206 81 PQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAIL--------PNGQTIF-----TGSTLQIPRITKEDRGAYYCVAQN 147 (232)
Q Consensus 81 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~--------~~~~~~~-----~~~~l~i~~~~~~~~g~y~C~~~~ 147 (232)
..+..+.+|+++.|.|.+.+.+.+.+.|++++..+. ...++.. ....|.|.++..+|.|.|+|.+..
T Consensus 4 ~~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t 83 (95)
T cd05882 4 TQDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT 83 (95)
T ss_pred cccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence 345778899999999999999999999998775321 1222221 134899999999999999999987
Q ss_pred C
Q psy15206 148 G 148 (232)
Q Consensus 148 ~ 148 (232)
.
T Consensus 84 ~ 84 (95)
T cd05882 84 M 84 (95)
T ss_pred e
Confidence 3
No 159
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.14 E-value=6.4e-10 Score=62.43 Aligned_cols=62 Identities=44% Similarity=0.816 Sum_probs=50.1
Q ss_pred cCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206 88 EGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGI 149 (232)
Q Consensus 88 ~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~ 149 (232)
+|+.+.|.|.+.+.+.+.+.|++++..+............|.|.++...|.|.|.|.+.+..
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~ 62 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPESNRLSASGSTLTIKSVSLEDSGEYTCVAENSA 62 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECCCCCEEecCCcEEEEeeCCcccCEEEEEEEecCC
Confidence 47889999998888888999999988766322233445689999999999999999998754
No 160
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.14 E-value=1.8e-10 Score=69.83 Aligned_cols=53 Identities=17% Similarity=0.324 Sum_probs=41.5
Q ss_pred cCeEEEEEEeecCCCCeEEEeeC----CEEecCC------------------CeEEEEEeccccCCceEEEEecC
Q psy15206 179 HHDMDLDCHIEAYPHPILYWAKD----GEIVVND------------------EYHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 179 g~~~~l~C~~~~~p~~~~~W~~~----g~~~~~~------------------~~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
|+++.|.|.+.|.|.|.|.|+|+ |..+..+ ....|.+.+++.+|+|.|+|.|+
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~ 75 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAG 75 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEE
Confidence 67899999999999999999984 3322211 11368888899999999999974
No 161
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.14 E-value=2.3e-10 Score=69.33 Aligned_cols=53 Identities=17% Similarity=0.296 Sum_probs=41.0
Q ss_pred cCeEEEEEEeecCCCCeEEEeeCC----EEecC------------------CCeEEEEEeccccCCceEEEEecC
Q psy15206 179 HHDMDLDCHIEAYPHPILYWAKDG----EIVVN------------------DEYHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 179 g~~~~l~C~~~~~p~~~~~W~~~g----~~~~~------------------~~~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
|+.+.|.|.+.|.|.|.|+|+|++ ..+.. .....+.+.+++.+|+|.|+|.|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~ 75 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAG 75 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEee
Confidence 678999999999999999999963 22110 112367778888999999999984
No 162
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.13 E-value=2.5e-10 Score=67.89 Aligned_cols=59 Identities=17% Similarity=0.124 Sum_probs=47.4
Q ss_pred eeeeeccCeEEEEEEeec-CCCCeEEEeeCCEEecC-CCeEEEEEeccccCCceEEEEecC
Q psy15206 173 RIGQALHHDMDLDCHIEA-YPHPILYWAKDGEIVVN-DEYHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 173 ~~~~~~g~~~~l~C~~~~-~p~~~~~W~~~g~~~~~-~~~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
...+.+|+.++|.|.+.+ .+.+.+.|+|+|..+.. .....+.+..++.+|+|.|.|.+.
T Consensus 8 ~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~~~~~~l~I~~~~~~dsG~Y~C~~~ 68 (83)
T cd05753 8 SRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYSHSNSNLSIPQATLSDSGSYHCSGI 68 (83)
T ss_pred cceecCCCCEEEEeeCCCCCcceEEEEEECCeEccccCCCceEEECccCHHHCEEEEEEEE
Confidence 346789999999999854 55668999999987753 234577888889999999999975
No 163
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.12 E-value=1.2e-10 Score=66.96 Aligned_cols=50 Identities=20% Similarity=0.531 Sum_probs=40.5
Q ss_pred EEEEEEeecCCCCeEEEeeCCEEecCC-----CeEEEEEeccccCCceEEEEecC
Q psy15206 182 MDLDCHIEAYPHPILYWAKDGEIVVND-----EYHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 182 ~~l~C~~~~~p~~~~~W~~~g~~~~~~-----~~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
+.|.|.+.|.|.|.+.|+|++..+... ....|.+.++..+|+|.|+|.|.
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 55 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAE 55 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCCCcEEEeeCCEEEECcCChhHCEEEEEEEE
Confidence 479999999999999999997655432 23367777888899999999974
No 164
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.11 E-value=1.6e-10 Score=67.56 Aligned_cols=50 Identities=22% Similarity=0.448 Sum_probs=40.6
Q ss_pred EEEEEEeec-CCCCeEEEeeCCEEecCCC------------eEEEEEeccccCCceEEEEecC
Q psy15206 182 MDLDCHIEA-YPHPILYWAKDGEIVVNDE------------YHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 182 ~~l~C~~~~-~p~~~~~W~~~g~~~~~~~------------~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
+.|.|.+.| .|.|.+.|+|+|..+.... ...|.+..+...|+|.|.|.|.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 63 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVE 63 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEE
Confidence 369999999 9999999999998765322 2356777888899999999974
No 165
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.11 E-value=4.5e-10 Score=65.45 Aligned_cols=53 Identities=25% Similarity=0.524 Sum_probs=41.6
Q ss_pred cCeEEEEEEeecCCCCeEEEee-CCEEecCCCe------EEEEEeccccCCceEEEEecC
Q psy15206 179 HHDMDLDCHIEAYPHPILYWAK-DGEIVVNDEY------HSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 179 g~~~~l~C~~~~~p~~~~~W~~-~g~~~~~~~~------~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
|+.+.|.|.+.|.|.|.+.|++ ++..+....+ -.+.+..+...|.|.|.|.|.
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~ 60 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIAS 60 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEE
Confidence 6789999999999999999997 5665543322 245666778899999999974
No 166
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.11 E-value=1.8e-09 Score=65.98 Aligned_cols=68 Identities=18% Similarity=0.379 Sum_probs=51.7
Q ss_pred CCceEeecCCcEEEEeeeccCCCCeEEEEeCCee--------eCCCCcEEe-----eCCeEEECCCCCCCCeEEEEEeEe
Q psy15206 81 PQLSVAKEGQSVQLECHAEGHPIPTISWRRENNA--------ILPNGQTIF-----TGSTLQIPRITKEDRGAYYCVAQN 147 (232)
Q Consensus 81 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~--------~~~~~~~~~-----~~~~l~i~~~~~~~~g~y~C~~~~ 147 (232)
+....+.+|+++.|.|.+.+.|.+.+.|++.+.. .....++.. ...+|.|.+++.+|+|.|.|.+..
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t 83 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFT 83 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEe
Confidence 4557888999999999999999899999864321 122233322 224799999999999999999987
Q ss_pred C
Q psy15206 148 G 148 (232)
Q Consensus 148 ~ 148 (232)
.
T Consensus 84 ~ 84 (95)
T cd07701 84 M 84 (95)
T ss_pred e
Confidence 4
No 167
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.11 E-value=5.6e-10 Score=65.42 Aligned_cols=60 Identities=23% Similarity=0.500 Sum_probs=46.1
Q ss_pred EEEEeeecc-CCCCeEEEEeCCeeeCCCC----cEEe----eCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206 92 VQLECHAEG-HPIPTISWRRENNAILPNG----QTIF----TGSTLQIPRITKEDRGAYYCVAQNGIGR 151 (232)
Q Consensus 92 ~~l~C~~~~-~~~~~~~W~~~~~~~~~~~----~~~~----~~~~l~i~~~~~~~~g~y~C~~~~~~~~ 151 (232)
+.|.|.+.+ .|.+.+.|++++..+.... +... ..+.|.|.++...|+|.|.|.+.|..|.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~ 69 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGN 69 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCc
Confidence 368999875 5778899999988774321 1111 2357999999999999999999998876
No 168
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.11 E-value=4.6e-10 Score=67.08 Aligned_cols=52 Identities=17% Similarity=0.365 Sum_probs=41.3
Q ss_pred CeEEEEEEeecCCCC--eEEEeeCCEEecCC---C----------eEEEEEeccccCCceEEEEecC
Q psy15206 180 HDMDLDCHIEAYPHP--ILYWAKDGEIVVND---E----------YHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 180 ~~~~l~C~~~~~p~~--~~~W~~~g~~~~~~---~----------~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
+.+.|.|.+.|.|.| .+.|++||..+... . ...|.+.+++..|+|.|+|.|.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~ 67 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQ 67 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEe
Confidence 468999999999987 58999999876431 1 2356777888899999999974
No 169
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.10 E-value=2e-10 Score=66.40 Aligned_cols=50 Identities=26% Similarity=0.466 Sum_probs=40.8
Q ss_pred EEEEEEeecCCCCeEEEeeCCEEecCC------CeEEEEEeccccCCceEEEEecC
Q psy15206 182 MDLDCHIEAYPHPILYWAKDGEIVVND------EYHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 182 ~~l~C~~~~~p~~~~~W~~~g~~~~~~------~~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
+.|.|.+.|.|.|.+.|+|++..+... ....|.+.++..+|+|.|+|.|.
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~ 56 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTAS 56 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEE
Confidence 478999999999999999998765432 22367788888999999999874
No 170
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.09 E-value=2.5e-10 Score=66.75 Aligned_cols=50 Identities=24% Similarity=0.424 Sum_probs=38.5
Q ss_pred EEEEEEeecCCCCeEEEeeCCEEec---C-------CCeEEEEEeccccCCceEEEEecC
Q psy15206 182 MDLDCHIEAYPHPILYWAKDGEIVV---N-------DEYHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 182 ~~l~C~~~~~p~~~~~W~~~g~~~~---~-------~~~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
+.|.|.+.|.|.|.+.|+|+|.... . .....+.+.++..+|+|.|.|.|.
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~ 60 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQ 60 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEE
Confidence 4789999999999999999975321 1 112356777888899999999974
No 171
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.07 E-value=4.7e-10 Score=68.02 Aligned_cols=53 Identities=15% Similarity=0.451 Sum_probs=42.1
Q ss_pred cCeEEEEEEeecCCCCeEEEeeCCEEe--------cCCCe------EEEEEeccccCCceEEEEecC
Q psy15206 179 HHDMDLDCHIEAYPHPILYWAKDGEIV--------VNDEY------HSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 179 g~~~~l~C~~~~~p~~~~~W~~~g~~~--------~~~~~------~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
|+.+.|.|.+.|.|.|.+.|+|+|..+ ....+ ..|.+.++..+|+|.|.|.|.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~ 67 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTL 67 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEE
Confidence 678999999999999999999988542 11222 246777888899999999974
No 172
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.07 E-value=4.7e-09 Score=63.49 Aligned_cols=77 Identities=22% Similarity=0.371 Sum_probs=54.3
Q ss_pred eEeecCCcEEEEeeeccCCCCeEEEEeCCe--ee----CCCCcEEeeCCeEEECCCCCCCCeEEEEEeEe-CCCCceeeE
Q psy15206 84 SVAKEGQSVQLECHAEGHPIPTISWRRENN--AI----LPNGQTIFTGSTLQIPRITKEDRGAYYCVAQN-GIGRGARRK 156 (232)
Q Consensus 84 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~--~~----~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~-~~~~~~~~~ 156 (232)
....+|+++.|.|.. +.|.+.+.|++... .. ....+.....+.|.|.++..+|+|.|.|.+.+ ..+. ....
T Consensus 6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~-~~~~ 83 (91)
T cd05871 6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTCTAVEHSFSQ-TLAK 83 (91)
T ss_pred EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCEEEEEEEEccCCeE-EEEE
Confidence 456689999999996 47888999998432 11 12234445567899999999999999999985 4333 3345
Q ss_pred EEEEEE
Q psy15206 157 IEVKVE 162 (232)
Q Consensus 157 ~~l~v~ 162 (232)
+.|.|.
T Consensus 84 ~~l~v~ 89 (91)
T cd05871 84 YTLHVI 89 (91)
T ss_pred EEEEEe
Confidence 555543
No 173
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.07 E-value=3.8e-10 Score=68.68 Aligned_cols=59 Identities=14% Similarity=0.102 Sum_probs=46.1
Q ss_pred eeeeeccCeEEEEEEeec-----CCCCeEEEeeCCEEecC----CC-----eEEEEEeccccCCceEEEEecC
Q psy15206 173 RIGQALHHDMDLDCHIEA-----YPHPILYWAKDGEIVVN----DE-----YHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 173 ~~~~~~g~~~~l~C~~~~-----~p~~~~~W~~~g~~~~~----~~-----~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
...+.+|+.+.|.|.+.+ .|.+.+.|+|+|..+.. .. ...|.+..+..+|+|.|+|.++
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~ 80 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVR 80 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEc
Confidence 345678999999999998 68889999999865321 11 2356777888899999999875
No 174
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.07 E-value=5.9e-10 Score=66.81 Aligned_cols=52 Identities=17% Similarity=0.343 Sum_probs=41.3
Q ss_pred CeEEEEEEeecCCCC--eEEEeeCCEEecCC-------------CeEEEEEeccccCCceEEEEecC
Q psy15206 180 HDMDLDCHIEAYPHP--ILYWAKDGEIVVND-------------EYHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 180 ~~~~l~C~~~~~p~~--~~~W~~~g~~~~~~-------------~~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
+++.|.|.+.|.|.+ .+.|+++|..+..+ ..-.|.+.++...|+|.|+|.|.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 67 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQ 67 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEe
Confidence 468999999999987 57999999876522 12247777888899999999974
No 175
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.06 E-value=5.3e-10 Score=65.48 Aligned_cols=50 Identities=20% Similarity=0.425 Sum_probs=35.0
Q ss_pred EEEEEEeecCCCCeEEEeeCCEEecC-----------CCeEEEEEeccc--cCCceEEEEecC
Q psy15206 182 MDLDCHIEAYPHPILYWAKDGEIVVN-----------DEYHSISNFGTS--EGTTGSLQCKVP 231 (232)
Q Consensus 182 ~~l~C~~~~~p~~~~~W~~~g~~~~~-----------~~~~~~~~~~~~--~~d~g~Y~C~~~ 231 (232)
+.|.|.+.|.|.|+++|+|+|..+.. ++.+.|...... ..|.|.|+|.|.
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~ 63 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTAR 63 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEE
Confidence 47999999999999999999987531 122223222221 247899999984
No 176
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.06 E-value=4.8e-10 Score=65.76 Aligned_cols=50 Identities=18% Similarity=0.434 Sum_probs=36.3
Q ss_pred EEEEEEeecCCCCeEEEeeCCEEecCC--C-------eEEEEEeccc----cCCceEEEEecC
Q psy15206 182 MDLDCHIEAYPHPILYWAKDGEIVVND--E-------YHSISNFGTS----EGTTGSLQCKVP 231 (232)
Q Consensus 182 ~~l~C~~~~~p~~~~~W~~~g~~~~~~--~-------~~~~~~~~~~----~~d~g~Y~C~~~ 231 (232)
+.|.|.+.|.|.|.|+|+|||..+... . ...|.+.... ..|+|.|+|.|.
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~ 63 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYAS 63 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEE
Confidence 478999999999999999999876422 1 1233344332 368999999974
No 177
>KOG3515|consensus
Probab=99.05 E-value=2.9e-09 Score=85.58 Aligned_cols=196 Identities=22% Similarity=0.286 Sum_probs=119.7
Q ss_pred ccCCCeeecCCCcceEeecCCeEEEEEEecC-CCCCeEEEEeCcEee-eeEEEEe-------------------------
Q psy15206 9 VDTPPVILNNSTQLSVAKEGQSVQLECHAEG-HPIPTISWRRNFKRL-GRLHLAI------------------------- 61 (232)
Q Consensus 9 ~~~~P~i~~~~~~~~~~~~G~~v~l~C~~~~-~p~~~~~W~~~~~~~-~~~~~~~------------------------- 61 (232)
+...|.+... ..+.-+..|+.|.|.|.+.+ +|...+.|++..... +++....
T Consensus 4 ~p~~pv~~~~-~l~~~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~a~ns~ 82 (741)
T KOG3515|consen 4 PPNVPVCESS-SLTVGLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEHGRYATIADPTLVTTGDVRDTVAELNCRAFNSV 82 (741)
T ss_pred CCCCccccCC-CCChhhccCCcceeeeecCCCCCCcceEEEecCcccccccccccCCceeeecchhhhhhhhhhhhcccc
Confidence 3445666555 44448999999999999997 456789999954433 2222222
Q ss_pred ---eeecCceeecCCcEEecCCCCceEeecCCcEEEEeeecc--CCCCeEEEEeCCeeeCCCC------------cEEee
Q psy15206 62 ---PYTSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEG--HPIPTISWRRENNAILPNG------------QTIFT 124 (232)
Q Consensus 62 ---~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~--~~~~~~~W~~~~~~~~~~~------------~~~~~ 124 (232)
.+..+.+.+..++.-.. .........+..+.+.|.... .|.+.+.|..+........ .....
T Consensus 83 ~~~~~~~~~l~v~~~pa~~~-~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~ 161 (741)
T KOG3515|consen 83 GMPSRCPMILDVDYPPACLP-ELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTE 161 (741)
T ss_pred cCceecceeeccccCccccc-cccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceecc
Confidence 11144444444443222 222334456778999996543 5667799998876543221 01122
Q ss_pred CCeEEECCCCCCCCeEEEEEeEeCC--CCceeeEEEEEEEeccE--EEeccc-eeeeeccCeEEEEEEe-ecCCCCeEEE
Q psy15206 125 GSTLQIPRITKEDRGAYYCVAQNGI--GRGARRKIEVKVEFAPI--VTVQST-RIGQALHHDMDLDCHI-EAYPHPILYW 198 (232)
Q Consensus 125 ~~~l~i~~~~~~~~g~y~C~~~~~~--~~~~~~~~~l~v~~~p~--~~~~~~-~~~~~~g~~~~l~C~~-~~~p~~~~~W 198 (232)
.+.+.+...+..+.|.|+|.+.+.. +....+...+.+..+.. ...... ......|..+.|.|.+ .|+|.+.+.|
T Consensus 162 ~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w 241 (741)
T KOG3515|consen 162 PSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTW 241 (741)
T ss_pred ccceeeEEEEecCCceeEcccccccCccccccceeEeecccccccceecchhhcCcccccceEEEEehhhcCCcchhhhh
Confidence 4567777888899999999998853 22233333444433221 122222 2456789999999976 4678888999
Q ss_pred eeCCEEec
Q psy15206 199 AKDGEIVV 206 (232)
Q Consensus 199 ~~~g~~~~ 206 (232)
+++.....
T Consensus 242 ~~~s~~~~ 249 (741)
T KOG3515|consen 242 YKDSRPQS 249 (741)
T ss_pred ccccccch
Confidence 99875543
No 178
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=99.05 E-value=3.8e-10 Score=63.79 Aligned_cols=52 Identities=17% Similarity=0.442 Sum_probs=40.7
Q ss_pred cCeEEEEEEe-ecCCCCeEEEeeCCEEecC---------CC-eE-EEEEeccccCCceEEEEec
Q psy15206 179 HHDMDLDCHI-EAYPHPILYWAKDGEIVVN---------DE-YH-SISNFGTSEGTTGSLQCKV 230 (232)
Q Consensus 179 g~~~~l~C~~-~~~p~~~~~W~~~g~~~~~---------~~-~~-~~~~~~~~~~d~g~Y~C~~ 230 (232)
|++++|.|.+ .+.+...+.|++++..+.. .. .. .|.+.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7889999999 7777789999998754321 11 11 2888899999999999986
No 179
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.04 E-value=6.3e-10 Score=65.95 Aligned_cols=52 Identities=15% Similarity=0.365 Sum_probs=40.8
Q ss_pred CeEEEEEEeec--CCCCeEEEeeCCEEec--CC-CeE----------EEEEeccccCCceEEEEecC
Q psy15206 180 HDMDLDCHIEA--YPHPILYWAKDGEIVV--ND-EYH----------SISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 180 ~~~~l~C~~~~--~p~~~~~W~~~g~~~~--~~-~~~----------~~~~~~~~~~d~g~Y~C~~~ 231 (232)
+++.|.|.+.+ .+.+.|.|++||..+. .. .+| .|.+.++...|+|+|+|.|.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~ 67 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQ 67 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEE
Confidence 46899999976 4467899999999885 22 122 47778889999999999974
No 180
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.04 E-value=2.2e-09 Score=63.50 Aligned_cols=57 Identities=18% Similarity=0.390 Sum_probs=46.8
Q ss_pred eeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCeEEEEEeccccCCceEEEEecC
Q psy15206 174 IGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 174 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
..+..|+.+.|.|.+.+.|.+.+.|++++..+...... +.+..+..+|.|.|.|.+.
T Consensus 9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~~g~y~C~~~ 65 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQNG-LFIPNVSPEDSGNYTCRAS 65 (80)
T ss_dssp SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEESSE-EEESSEEGGGTEEEEEEEE
T ss_pred eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeeeee-eeeeeeccccCEEEEEEEE
Confidence 45788999999999999988999999999888754332 4446677899999999874
No 181
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.03 E-value=8.5e-10 Score=65.97 Aligned_cols=53 Identities=11% Similarity=0.233 Sum_probs=42.3
Q ss_pred cCeEEEEEEeecC--CCCeEEEeeCCEEecC--------------CCeEEEEEeccccCCceEEEEecC
Q psy15206 179 HHDMDLDCHIEAY--PHPILYWAKDGEIVVN--------------DEYHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 179 g~~~~l~C~~~~~--p~~~~~W~~~g~~~~~--------------~~~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
|+.+.|.|.+.+. |.+.+.|.+++..+.. .....|.+.++..+|+|.|.|.|+
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~ 69 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAAS 69 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEc
Confidence 6889999999999 7889999987643321 123577888899999999999985
No 182
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.03 E-value=8.7e-10 Score=64.59 Aligned_cols=50 Identities=26% Similarity=0.431 Sum_probs=40.3
Q ss_pred EEEEEEeecCCCCeEEEeeCCEEecCCC---------eEEEEEeccccCCceEEEEecC
Q psy15206 182 MDLDCHIEAYPHPILYWAKDGEIVVNDE---------YHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 182 ~~l~C~~~~~p~~~~~W~~~g~~~~~~~---------~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
+.|.|.+.|.|.|.+.|+|++..+..+. ...+.+.++...|.|.|+|.+.
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~ 59 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAK 59 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEE
Confidence 3689999999999999999998765331 1356677788899999999874
No 183
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.02 E-value=8.8e-10 Score=64.57 Aligned_cols=50 Identities=22% Similarity=0.439 Sum_probs=39.1
Q ss_pred EEEEEEeec-CCCCeEEEeeCCEEecCC-------------CeEEEEEeccccCCceEEEEecC
Q psy15206 182 MDLDCHIEA-YPHPILYWAKDGEIVVND-------------EYHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 182 ~~l~C~~~~-~p~~~~~W~~~g~~~~~~-------------~~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
+.|.|.+.+ .|.+.+.|+|+|..+... ....|.+.++...|+|.|.|.|+
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~ 64 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVS 64 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEE
Confidence 479999864 677899999999877422 12457778888899999999984
No 184
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.02 E-value=1.1e-09 Score=66.23 Aligned_cols=60 Identities=13% Similarity=0.217 Sum_probs=46.2
Q ss_pred cceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCC----Ce-----EEEEEeccccCCceEEEEecC
Q psy15206 171 STRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVND----EY-----HSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 171 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~----~~-----~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
+....+..|+++.|.|.+.+ |.+.+.|+|++..+... .+ ..+.+.++..+|+|.|.|.|.
T Consensus 3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 71 (89)
T cd04979 3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSV 71 (89)
T ss_pred ceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEe
Confidence 34456778999999999977 78899999998765432 12 235667788899999999974
No 185
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.02 E-value=7.9e-10 Score=65.67 Aligned_cols=53 Identities=13% Similarity=0.360 Sum_probs=41.1
Q ss_pred cCeEEEEEEeecCCCCeEEEeeCCE---E--ecC---------CCeEEEEEeccccCCceEEEEecC
Q psy15206 179 HHDMDLDCHIEAYPHPILYWAKDGE---I--VVN---------DEYHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 179 g~~~~l~C~~~~~p~~~~~W~~~g~---~--~~~---------~~~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
|+.+.|.|.+.|.|.|.+.|+|++. . +.. .....|.+.++..+|+|.|.|.|.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 67 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTAR 67 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEe
Confidence 6789999999999999999999731 1 111 112467778889999999999874
No 186
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.01 E-value=1.8e-09 Score=65.32 Aligned_cols=57 Identities=11% Similarity=0.169 Sum_probs=45.9
Q ss_pred eeeccCeEEEEEEeecCCCCeEEEeeCCEEe-c-------------------------CCCeEEEEEeccccCCceEEEE
Q psy15206 175 GQALHHDMDLDCHIEAYPHPILYWAKDGEIV-V-------------------------NDEYHSISNFGTSEGTTGSLQC 228 (232)
Q Consensus 175 ~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~-~-------------------------~~~~~~~~~~~~~~~d~g~Y~C 228 (232)
.+..|++++|.|.+.+.+.+.+.|+++++.. . ..+.+.|.+.++..+|+|+|.|
T Consensus 3 ~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C 82 (94)
T cd07690 3 LGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYIC 82 (94)
T ss_pred EeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEE
Confidence 4568999999999999888899999665221 0 2235789999999999999999
Q ss_pred ecC
Q psy15206 229 KVP 231 (232)
Q Consensus 229 ~~~ 231 (232)
.|.
T Consensus 83 ~v~ 85 (94)
T cd07690 83 EVE 85 (94)
T ss_pred EEC
Confidence 985
No 187
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.01 E-value=3.4e-09 Score=64.08 Aligned_cols=69 Identities=25% Similarity=0.397 Sum_probs=53.8
Q ss_pred CceEeecCCcEEEEeee-ccCCCCeEEEEeCCeeeC--CCC-cEEe-eCCeEEECCCCCCCCeEEEEEeEeCCC
Q psy15206 82 QLSVAKEGQSVQLECHA-EGHPIPTISWRRENNAIL--PNG-QTIF-TGSTLQIPRITKEDRGAYYCVAQNGIG 150 (232)
Q Consensus 82 ~~~~~~~g~~~~l~C~~-~~~~~~~~~W~~~~~~~~--~~~-~~~~-~~~~l~i~~~~~~~~g~y~C~~~~~~~ 150 (232)
....+.+|+.+.|.|.. .|.|.+.+.|++++.... .+. ++.. .++.|.|.++...|.|.|.|.+.+...
T Consensus 11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~ 84 (96)
T cd05727 11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSS 84 (96)
T ss_pred CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEeccc
Confidence 34567789999999975 568889999999986542 122 2222 368999999999999999999998654
No 188
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.01 E-value=1.9e-09 Score=64.32 Aligned_cols=53 Identities=9% Similarity=0.248 Sum_probs=42.4
Q ss_pred cCeEEEEEEeecCCCCeEEEeeCCEEec-----------C--CCeEEEEEeccccCCceEEEEecC
Q psy15206 179 HHDMDLDCHIEAYPHPILYWAKDGEIVV-----------N--DEYHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 179 g~~~~l~C~~~~~p~~~~~W~~~g~~~~-----------~--~~~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
|++++|.|.+.+.|.+.+.|++.+.... . .....|.+.++..+|+|.|.|.|+
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~ 66 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAH 66 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEE
Confidence 7889999999999999999998664211 1 124578888999999999999975
No 189
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.00 E-value=2.2e-09 Score=60.21 Aligned_cols=54 Identities=22% Similarity=0.399 Sum_probs=44.2
Q ss_pred ccCeEEEEEEeecCCCCeEEEeeCCEEecC-----CCeEEEEEeccccCCceEEEEecC
Q psy15206 178 LHHDMDLDCHIEAYPHPILYWAKDGEIVVN-----DEYHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 178 ~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~-----~~~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
.|+.+.|.|.+.+.+.+.+.|++++..+.. .....|.+.++...|+|.|.|.+.
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 59 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPESNRLSASGSTLTIKSVSLEDSGEYTCVAE 59 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECCCCCEEecCCcEEEEeeCCcccCEEEEEEEe
Confidence 478899999998898899999999877652 234467777888899999999874
No 190
>KOG3515|consensus
Probab=99.00 E-value=3.3e-09 Score=85.32 Aligned_cols=146 Identities=17% Similarity=0.308 Sum_probs=109.0
Q ss_pred EeecCCcEEEEeeeccCCC-CeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEEe
Q psy15206 85 VAKEGQSVQLECHAEGHPI-PTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEF 163 (232)
Q Consensus 85 ~~~~g~~~~l~C~~~~~~~-~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~ 163 (232)
.+.+|+.+.|.|.+.+.|+ +.+.|++.++... .......+..|.......+..+.|.|.+.++.+......+.+.+.+
T Consensus 18 ~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l~v~~ 96 (741)
T KOG3515|consen 18 GLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH-GRYATIADPTLVTTGDVRDTVAELNCRAFNSVGMPSRCPMILDVDY 96 (741)
T ss_pred hhccCCcceeeeecCCCCCCcceEEEecCcccc-cccccccCCceeeecchhhhhhhhhhhhcccccCceecceeecccc
Confidence 6778999999999988665 5799999988776 3334455677888888888888999999998777677788888888
Q ss_pred ccEEEeccceeeeeccCeEEEEEEe--ecCCCCeEEEeeCCEEecCC-------------C----eEEEEEeccccCCce
Q psy15206 164 APIVTVQSTRIGQALHHDMDLDCHI--EAYPHPILYWAKDGEIVVND-------------E----YHSISNFGTSEGTTG 224 (232)
Q Consensus 164 ~p~~~~~~~~~~~~~g~~~~l~C~~--~~~p~~~~~W~~~g~~~~~~-------------~----~~~~~~~~~~~~d~g 224 (232)
+|.............+..+.+.|.+ .+.|.+++.|..++...... + .-.+........+.|
T Consensus 97 ~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g 176 (741)
T KOG3515|consen 97 PPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNG 176 (741)
T ss_pred CccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecCCc
Confidence 8876655555566788999999965 46677789999887543210 1 112233334558899
Q ss_pred EEEEecC
Q psy15206 225 SLQCKVP 231 (232)
Q Consensus 225 ~Y~C~~~ 231 (232)
+|+|.+.
T Consensus 177 ~~tC~A~ 183 (741)
T KOG3515|consen 177 NYTCPAN 183 (741)
T ss_pred eeEcccc
Confidence 9999874
No 191
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.00 E-value=1e-09 Score=66.37 Aligned_cols=58 Identities=17% Similarity=0.224 Sum_probs=45.9
Q ss_pred eeeeccCeEEEEEEeecC-----CCCeEEEeeCCEEecCCCe-----EEEEEeccccCCceEEEEecC
Q psy15206 174 IGQALHHDMDLDCHIEAY-----PHPILYWAKDGEIVVNDEY-----HSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 174 ~~~~~g~~~~l~C~~~~~-----p~~~~~W~~~g~~~~~~~~-----~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
..+..|+++.|.|...+. |.|.+.|+|||..+..... ..|.+.++..+|+|.|+|.+.
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~~~~~L~I~~v~~~DsG~YtC~~~ 72 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFVKGSKLLIQNVTEEDAGNYTCKLT 72 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEecCCEEEEeeCChhhCEEEEEEEE
Confidence 356789999999986432 5678999999998865432 457778889999999999984
No 192
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.00 E-value=1.4e-09 Score=63.72 Aligned_cols=50 Identities=20% Similarity=0.454 Sum_probs=35.2
Q ss_pred EEEEEEeecCCCCeEEEeeCCEEec--CCC-------eEEEEEeccc----cCCceEEEEecC
Q psy15206 182 MDLDCHIEAYPHPILYWAKDGEIVV--NDE-------YHSISNFGTS----EGTTGSLQCKVP 231 (232)
Q Consensus 182 ~~l~C~~~~~p~~~~~W~~~g~~~~--~~~-------~~~~~~~~~~----~~d~g~Y~C~~~ 231 (232)
+.|.|.+.|.|.|.|+|+|+|..+. .+. ...+.+.... ..|+|.|+|.|.
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~ 63 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFAR 63 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEE
Confidence 4689999999999999999997652 121 1233443321 246999999974
No 193
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.00 E-value=2.9e-09 Score=63.82 Aligned_cols=57 Identities=19% Similarity=0.405 Sum_probs=46.5
Q ss_pred eeeccCeEEEEEEeecCCCCeEEEeeCCEEecCC----------CeEEEEEeccccCCceEEEEecC
Q psy15206 175 GQALHHDMDLDCHIEAYPHPILYWAKDGEIVVND----------EYHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 175 ~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~----------~~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
.+..|+.+.|.|.+.+.|.+.+.|++++..+..+ ..+.+.+.++..+|.|.|.|.+.
T Consensus 5 ~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~ 71 (85)
T cd05729 5 AVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVE 71 (85)
T ss_pred EecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEE
Confidence 4567999999999999999999999998776422 22457777888999999999874
No 194
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.99 E-value=5.2e-09 Score=61.87 Aligned_cols=71 Identities=34% Similarity=0.698 Sum_probs=54.3
Q ss_pred eEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEE
Q psy15206 84 SVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVK 160 (232)
Q Consensus 84 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~ 160 (232)
..+..|+.+.|.|.+.+.+...+.|++++..+.. ....+.+..+..+|.|.|.|.+.+..+...+..+.+.
T Consensus 9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~------~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~ 79 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINS------SQNGLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVT 79 (80)
T ss_dssp SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEE------ESSEEEESSEEGGGTEEEEEEEEETTEEEEEEEEEEE
T ss_pred eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeee------eeeeeeeeeeccccCEEEEEEEEeCCCCeEeeeEEee
Confidence 4577899999999999888889999998866541 2223777889999999999999986554344444444
No 195
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=98.97 E-value=3.4e-09 Score=64.71 Aligned_cols=61 Identities=18% Similarity=0.277 Sum_probs=47.1
Q ss_pred cceeeeeccCeEEEEEEeecCCCCeEEEeeCC--------EE--------ec--CCCeEEEEEeccccCCceEEEEecC
Q psy15206 171 STRIGQALHHDMDLDCHIEAYPHPILYWAKDG--------EI--------VV--NDEYHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 171 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g--------~~--------~~--~~~~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
+.++.+.+|+++.|.|.+.+.|.+.+.|++.+ .. +. ....+.|.+.++..+|+|.|.|.+.
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~ 82 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLF 82 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeE
Confidence 44567889999999999999999999997521 11 10 1234677888999999999999874
No 196
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=98.97 E-value=2.5e-09 Score=64.10 Aligned_cols=62 Identities=13% Similarity=0.193 Sum_probs=48.4
Q ss_pred ccceeeeeccCeEEEEEEeec-CCCCeEEEeeCCEEecCC---CeEEEEEeccccCCceEEEEecC
Q psy15206 170 QSTRIGQALHHDMDLDCHIEA-YPHPILYWAKDGEIVVND---EYHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 170 ~~~~~~~~~g~~~~l~C~~~~-~p~~~~~W~~~g~~~~~~---~~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
.|....+..|++++|.|.+.+ .|.+.+.|++++..+... ....|.+..+..+|+|.|.|.+.
T Consensus 7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~ 72 (85)
T cd05754 7 EPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRAMDFNGILTIRNVQLSDAGTYVCTGS 72 (85)
T ss_pred CCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcccccCCEEEECCCCHHHCEEEEEEEe
Confidence 355667789999999999865 678899999988654321 23467788889999999999874
No 197
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.96 E-value=1.3e-09 Score=64.31 Aligned_cols=50 Identities=26% Similarity=0.428 Sum_probs=37.6
Q ss_pred EEEEEEeecCCCCeEEEeeCCEEec--------CC------CeEEEEEeccccCCceEEEEecC
Q psy15206 182 MDLDCHIEAYPHPILYWAKDGEIVV--------ND------EYHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 182 ~~l~C~~~~~p~~~~~W~~~g~~~~--------~~------~~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
++|.|.+.|.|.|.+.|+|++.... .. ....|.+.++..+|+|.|.|.|.
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 64 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVS 64 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEE
Confidence 4799999999999999999643210 11 22456667778899999999984
No 198
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.96 E-value=1.5e-08 Score=59.86 Aligned_cols=66 Identities=17% Similarity=0.288 Sum_probs=54.5
Q ss_pred CceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeC
Q psy15206 82 QLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNG 148 (232)
Q Consensus 82 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~ 148 (232)
....+..|.++.|.|...+. ...+.|++++..+..+.+.......|.|..++..|+|.|.|.+...
T Consensus 4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~E~ 69 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGTDGLLILVTSPEHSGTYRCYSEEE 69 (85)
T ss_pred eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeCCCCEEEECCHhhCEEEEEEEecC
Confidence 34577889999999998764 5589999999988666666666677889999999999999998754
No 199
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=98.96 E-value=6.2e-09 Score=63.41 Aligned_cols=67 Identities=16% Similarity=0.264 Sum_probs=48.0
Q ss_pred ccEEEeccceeeeeccCeEEEEEEeecCCCCe-EEEeeCCEEecCC--CeE-------------EEEEeccccCC-ceEE
Q psy15206 164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHPI-LYWAKDGEIVVND--EYH-------------SISNFGTSEGT-TGSL 226 (232)
Q Consensus 164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-~~W~~~g~~~~~~--~~~-------------~~~~~~~~~~d-~g~Y 226 (232)
||.+ .......+..|+.+.|.|.+.+.|.|. |.|.+++..+... .+| .|.+.++...| .|.|
T Consensus 2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y 80 (98)
T cd05898 2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHY 80 (98)
T ss_pred CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEE
Confidence 4555 455667788999999999999999884 7888877655432 333 44455555456 7999
Q ss_pred EEecC
Q psy15206 227 QCKVP 231 (232)
Q Consensus 227 ~C~~~ 231 (232)
.|.|+
T Consensus 81 ~C~a~ 85 (98)
T cd05898 81 NCTAW 85 (98)
T ss_pred EEEEE
Confidence 99985
No 200
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.96 E-value=4.1e-09 Score=63.58 Aligned_cols=71 Identities=18% Similarity=0.273 Sum_probs=55.8
Q ss_pred CCCceEeecCCcEEEEee-eccCCCCeEEEEeCCeeeCC-CCcEEe-eCCeEEECCCCCCCCe-EEEEEeEeCCC
Q psy15206 80 SPQLSVAKEGQSVQLECH-AEGHPIPTISWRRENNAILP-NGQTIF-TGSTLQIPRITKEDRG-AYYCVAQNGIG 150 (232)
Q Consensus 80 ~~~~~~~~~g~~~~l~C~-~~~~~~~~~~W~~~~~~~~~-~~~~~~-~~~~l~i~~~~~~~~g-~y~C~~~~~~~ 150 (232)
......+.+|+.+.|.|. ..|.|.|.+.|++++..... ..+... .++.|.|.++...|.| .|.|.+.+...
T Consensus 9 ~~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~ 83 (95)
T cd05845 9 KIRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGL 83 (95)
T ss_pred ccceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEEcccc
Confidence 345678889999999997 68899999999987655332 333333 3589999999999999 89999998643
No 201
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=98.96 E-value=2.3e-08 Score=60.90 Aligned_cols=72 Identities=29% Similarity=0.492 Sum_probs=54.7
Q ss_pred CCCceEeecCCcEEEEeeeccCCCC-eEEEEeCCeeeCCC--CcEEe--------eCCeEEECCCCCCC-CeEEEEEeEe
Q psy15206 80 SPQLSVAKEGQSVQLECHAEGHPIP-TISWRRENNAILPN--GQTIF--------TGSTLQIPRITKED-RGAYYCVAQN 147 (232)
Q Consensus 80 ~~~~~~~~~g~~~~l~C~~~~~~~~-~~~W~~~~~~~~~~--~~~~~--------~~~~l~i~~~~~~~-~g~y~C~~~~ 147 (232)
........+|+.+.|.|.+.+.|.| .+.|...+..+... .++.. ..+.|.|.++...| .|.|.|.+.|
T Consensus 7 ~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N 86 (98)
T cd05898 7 SEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWN 86 (98)
T ss_pred cCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEe
Confidence 4555677899999999999888876 47898877655332 23322 23579999998877 6899999999
Q ss_pred CCCC
Q psy15206 148 GIGR 151 (232)
Q Consensus 148 ~~~~ 151 (232)
..|.
T Consensus 87 ~~G~ 90 (98)
T cd05898 87 SFGS 90 (98)
T ss_pred CCcc
Confidence 9887
No 202
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.95 E-value=2.1e-08 Score=61.43 Aligned_cols=69 Identities=19% Similarity=0.394 Sum_probs=50.6
Q ss_pred CCceEeecCCcEEEEeeeccCCCCeEEEEeCCeee--------CCCCcEEe-----eCCeEEECCCCCCCCeEEEEEeEe
Q psy15206 81 PQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAI--------LPNGQTIF-----TGSTLQIPRITKEDRGAYYCVAQN 147 (232)
Q Consensus 81 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~--------~~~~~~~~-----~~~~l~i~~~~~~~~g~y~C~~~~ 147 (232)
.....+.+|+++.|.|.+.+.+.+.+.|++.+..+ ....++.. ....|.|.+++.+|.|.|.|.+..
T Consensus 4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 83 (95)
T cd05717 4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYT 83 (95)
T ss_pred CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEec
Confidence 45567889999999999988777889998643321 11123222 134799999999999999999987
Q ss_pred CC
Q psy15206 148 GI 149 (232)
Q Consensus 148 ~~ 149 (232)
..
T Consensus 84 ~~ 85 (95)
T cd05717 84 MP 85 (95)
T ss_pred CC
Confidence 54
No 203
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.92 E-value=3.4e-09 Score=59.82 Aligned_cols=57 Identities=33% Similarity=0.657 Sum_probs=43.2
Q ss_pred CCcEEEEeee-ccCCCCeEEEEeCCeeeCCCCcEEe--eCC----eEEECCCCCCCCeEEEEEe
Q psy15206 89 GQSVQLECHA-EGHPIPTISWRRENNAILPNGQTIF--TGS----TLQIPRITKEDRGAYYCVA 145 (232)
Q Consensus 89 g~~~~l~C~~-~~~~~~~~~W~~~~~~~~~~~~~~~--~~~----~l~i~~~~~~~~g~y~C~~ 145 (232)
|+++.|.|.+ .+.+...+.|++++........... ... .|.|.+++.+|+|.|.|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 6889999999 6667778999999876543322211 112 2999999999999999986
No 204
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.90 E-value=1.5e-08 Score=60.67 Aligned_cols=72 Identities=26% Similarity=0.348 Sum_probs=49.9
Q ss_pred CCcEEEEeeeccCCC--CeEEEEeCCeeeCCC---C--cE-----EeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeE
Q psy15206 89 GQSVQLECHAEGHPI--PTISWRRENNAILPN---G--QT-----IFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRK 156 (232)
Q Consensus 89 g~~~~l~C~~~~~~~--~~~~W~~~~~~~~~~---~--~~-----~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~ 156 (232)
|+++.|.|.+.+.+. ..+.|..++...... . +. ....+.|.|.+++..|+|.|+|.+.|..+. ....
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~-~~~~ 79 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMI-AKNS 79 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceE-eccc
Confidence 678999999987554 468998877643110 1 00 112468999999999999999999997664 3344
Q ss_pred EEEEE
Q psy15206 157 IEVKV 161 (232)
Q Consensus 157 ~~l~v 161 (232)
..+.|
T Consensus 80 t~~~V 84 (86)
T cd05862 80 TIVIV 84 (86)
T ss_pred EEEEE
Confidence 44444
No 205
>smart00409 IG Immunoglobulin.
Probab=98.88 E-value=9.7e-08 Score=56.88 Aligned_cols=69 Identities=36% Similarity=0.700 Sum_probs=53.2
Q ss_pred ceEeecCCcEEEEeeeccCCCCeEEEEeC-CeeeCCCCcEEee----CCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206 83 LSVAKEGQSVQLECHAEGHPIPTISWRRE-NNAILPNGQTIFT----GSTLQIPRITKEDRGAYYCVAQNGIGR 151 (232)
Q Consensus 83 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~-~~~~~~~~~~~~~----~~~l~i~~~~~~~~g~y~C~~~~~~~~ 151 (232)
...+..|+++.|.|.+.+.+.+.+.|+++ +..+....+.... ...|.|.++...|.|.|.|.+.+..+.
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~ 76 (86)
T smart00409 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGS 76 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCe
Confidence 34567899999999998877778999998 6655423332221 257999999999999999999976655
No 206
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.88 E-value=9.7e-08 Score=56.88 Aligned_cols=69 Identities=36% Similarity=0.700 Sum_probs=53.2
Q ss_pred ceEeecCCcEEEEeeeccCCCCeEEEEeC-CeeeCCCCcEEee----CCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206 83 LSVAKEGQSVQLECHAEGHPIPTISWRRE-NNAILPNGQTIFT----GSTLQIPRITKEDRGAYYCVAQNGIGR 151 (232)
Q Consensus 83 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~-~~~~~~~~~~~~~----~~~l~i~~~~~~~~g~y~C~~~~~~~~ 151 (232)
...+..|+++.|.|.+.+.+.+.+.|+++ +..+....+.... ...|.|.++...|.|.|.|.+.+..+.
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~ 76 (86)
T smart00410 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGS 76 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCe
Confidence 34567899999999998877778999998 6655423332221 257999999999999999999976655
No 207
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.88 E-value=3.6e-08 Score=59.96 Aligned_cols=67 Identities=15% Similarity=0.230 Sum_probs=50.7
Q ss_pred eEeecCCcEEEEeeec-----------cCCCCeEEEEeCCeeeCCC-------CcEEeeCCeEEECCCCCCCCeEEEEEe
Q psy15206 84 SVAKEGQSVQLECHAE-----------GHPIPTISWRRENNAILPN-------GQTIFTGSTLQIPRITKEDRGAYYCVA 145 (232)
Q Consensus 84 ~~~~~g~~~~l~C~~~-----------~~~~~~~~W~~~~~~~~~~-------~~~~~~~~~l~i~~~~~~~~g~y~C~~ 145 (232)
..+.+|+.+.|.|... ......+.|+|++...... .+....+..|.|.++..+|+|.|+|.+
T Consensus 10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~ 89 (104)
T cd05896 10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCVL 89 (104)
T ss_pred EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEEE
Confidence 5677899999999962 1123479999997544332 245566789999999999999999999
Q ss_pred EeCCC
Q psy15206 146 QNGIG 150 (232)
Q Consensus 146 ~~~~~ 150 (232)
.|...
T Consensus 90 rN~t~ 94 (104)
T cd05896 90 RNSTY 94 (104)
T ss_pred CCCCc
Confidence 98653
No 208
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.87 E-value=3.4e-08 Score=57.56 Aligned_cols=60 Identities=23% Similarity=0.397 Sum_probs=46.2
Q ss_pred EEEEeeecc-CCCCeEEEEeCCeeeCCCC------cEEeeCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206 92 VQLECHAEG-HPIPTISWRRENNAILPNG------QTIFTGSTLQIPRITKEDRGAYYCVAQNGIGR 151 (232)
Q Consensus 92 ~~l~C~~~~-~~~~~~~W~~~~~~~~~~~------~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~ 151 (232)
+.|.|...+ .|++.+.||+++..+.... ......+.|.+.....+|.+.|+|.+.|..+.
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~ 68 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALV 68 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhC
Confidence 689999765 7888999999999875422 11123357899889999999999999997654
No 209
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.87 E-value=2.8e-08 Score=60.14 Aligned_cols=67 Identities=16% Similarity=0.242 Sum_probs=50.2
Q ss_pred EeecCCcEEEEeee-cc----CCCCeEEEEeCCeeeCCCC-cEEe--eCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206 85 VAKEGQSVQLECHA-EG----HPIPTISWRRENNAILPNG-QTIF--TGSTLQIPRITKEDRGAYYCVAQNGIGR 151 (232)
Q Consensus 85 ~~~~g~~~~l~C~~-~~----~~~~~~~W~~~~~~~~~~~-~~~~--~~~~l~i~~~~~~~~g~y~C~~~~~~~~ 151 (232)
.+..|.+..|.|.- .+ .+.+.+.|||++..+.... .+.. ..+.|.|.++..+|+|.|+|.+.+..+.
T Consensus 6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g 80 (95)
T cd05897 6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEG 80 (95)
T ss_pred EeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCC
Confidence 45578899999973 33 3456899999998875333 2222 2458999999999999999999987544
No 210
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.87 E-value=5.1e-09 Score=63.29 Aligned_cols=59 Identities=15% Similarity=0.178 Sum_probs=44.0
Q ss_pred eeeeeccCeEEEEEEe-ecCCCCeEEEeeCCEEe--cCCC-------eEEEEEeccccCCceEEEEecC
Q psy15206 173 RIGQALHHDMDLDCHI-EAYPHPILYWAKDGEIV--VNDE-------YHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 173 ~~~~~~g~~~~l~C~~-~~~p~~~~~W~~~g~~~--~~~~-------~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
...+.+|+.+.|.|.. .|.|.+.+.|++++..+ ..+. .-.|-..+++.+|+|.|.|.|.
T Consensus 12 ~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~ 80 (96)
T cd05727 12 EVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVS 80 (96)
T ss_pred ceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEE
Confidence 3457789999999974 78899999999998643 2222 1234445677799999999985
No 211
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.84 E-value=2e-08 Score=60.86 Aligned_cols=66 Identities=23% Similarity=0.404 Sum_probs=47.9
Q ss_pred EeecCCcEEEEeeeccCCCCeEEEEeCCeee-CC-------------CCcEEe-------eCCeEEECCCCCCCCeEEEE
Q psy15206 85 VAKEGQSVQLECHAEGHPIPTISWRRENNAI-LP-------------NGQTIF-------TGSTLQIPRITKEDRGAYYC 143 (232)
Q Consensus 85 ~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~-~~-------------~~~~~~-------~~~~l~i~~~~~~~~g~y~C 143 (232)
....|+++.|.|.+.+.+.+.+.|++++... .. ..++.. ...+|.|.++..+|+|.|+|
T Consensus 3 ~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C 82 (94)
T cd07690 3 LGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYIC 82 (94)
T ss_pred EeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEE
Confidence 4567999999999988888899999665321 10 011111 11369999999999999999
Q ss_pred EeEeCCC
Q psy15206 144 VAQNGIG 150 (232)
Q Consensus 144 ~~~~~~~ 150 (232)
.+.+..+
T Consensus 83 ~v~~~~~ 89 (94)
T cd07690 83 EVEDKKE 89 (94)
T ss_pred EECCccc
Confidence 9987644
No 212
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.83 E-value=1.5e-08 Score=61.40 Aligned_cols=66 Identities=12% Similarity=0.151 Sum_probs=49.6
Q ss_pred ccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEec------CCCeEEEEEeccccCCceEEEEecC
Q psy15206 164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVV------NDEYHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~------~~~~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
.|.+.+.+. ..+..|++++|+|... .+...+.|+|+|.... ......+.+..++.+|+|.|+|...
T Consensus 2 kP~L~a~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~ 73 (91)
T cd05751 2 KPSLWAEPS-SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYR 73 (91)
T ss_pred CCEEEecCC-CccCCCCcEEEEEecC-CCCCEEEEEECCCCccccccCCCceeEEEEccCCChhHCEEEEEEEE
Confidence 356666664 3577999999999885 5566899999987532 2234567778889999999999863
No 213
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.81 E-value=8.4e-09 Score=62.40 Aligned_cols=57 Identities=19% Similarity=0.287 Sum_probs=43.8
Q ss_pred eeeccCeEEEEEE-eecC----CCCeEEEeeCCEEecCC--------CeEEEEEeccccCCceEEEEecC
Q psy15206 175 GQALHHDMDLDCH-IEAY----PHPILYWAKDGEIVVND--------EYHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 175 ~~~~g~~~~l~C~-~~~~----p~~~~~W~~~g~~~~~~--------~~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
.+..|.+..|.|. ..++ +.+.+.|+||+..+... +...|.+.++..+|+|.|+|.++
T Consensus 6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~ 75 (95)
T cd05897 6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQ 75 (95)
T ss_pred EeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEE
Confidence 4567888999997 3333 56689999999887532 22357778889999999999985
No 214
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.80 E-value=1e-08 Score=59.73 Aligned_cols=67 Identities=15% Similarity=0.328 Sum_probs=46.6
Q ss_pred ccEEEeccceeeeeccCeEEEEEEeecCC-CCeEEEe------eCCEEecCCCeEEEEEeccccCCceEEEEecC
Q psy15206 164 APIVTVQSTRIGQALHHDMDLDCHIEAYP-HPILYWA------KDGEIVVNDEYHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~~~W~------~~g~~~~~~~~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
+|.+...+.......+. +.|.|.+.+.+ .+.++|+ .............|.+.++...|.|.|+|.|+
T Consensus 1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~ 74 (75)
T PF13927_consen 1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWYDSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIAS 74 (75)
T ss_dssp ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEETEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEE
T ss_pred CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEEecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEE
Confidence 35666665554443333 99999998887 7789999 22222223345677777888999999999984
No 215
>PHA03376 BARF1; Provisional
Probab=98.79 E-value=2.5e-07 Score=61.71 Aligned_cols=118 Identities=19% Similarity=0.277 Sum_probs=69.8
Q ss_pred ceEeecCCcEEEEeeecc---CCCCeEEEEeCCe----ee-CC------------CCcEEe----eCCeEEECCCCCCCC
Q psy15206 83 LSVAKEGQSVQLECHAEG---HPIPTISWRRENN----AI-LP------------NGQTIF----TGSTLQIPRITKEDR 138 (232)
Q Consensus 83 ~~~~~~g~~~~l~C~~~~---~~~~~~~W~~~~~----~~-~~------------~~~~~~----~~~~l~i~~~~~~~~ 138 (232)
.+....|+.+.|+|.... ...-.+.|++.+. -. .. ..+... .+-+|.|.+++.+|.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 345567999999999753 2234699999532 11 00 011111 223789999999999
Q ss_pred eEEEEEeEeCCCCceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeC
Q psy15206 139 GAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKD 201 (232)
Q Consensus 139 g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~ 201 (232)
|.|+|.+...... ..+.-.+.+..+-...++........-+...+.|...|+|.|.++|.-+
T Consensus 100 GtY~C~fQkge~~-~~k~ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~ 161 (221)
T PHA03376 100 GNYLCRMKLGETE-VTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMP 161 (221)
T ss_pred ceEEEEEEcCCCc-eeeeeeeeeeecceEEEEeccccCCCCCeeEEEEecCCcCCchheeccc
Confidence 9999999875432 2111122221222222222111112245568999999999999999865
No 216
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.78 E-value=3.8e-08 Score=60.28 Aligned_cols=60 Identities=17% Similarity=0.260 Sum_probs=45.5
Q ss_pred ceeeeeccCeEEEEEEeecCCCCeEEEeeCCEE---------ec---------CCCeEEEEEeccccCCceEEEEecC
Q psy15206 172 TRIGQALHHDMDLDCHIEAYPHPILYWAKDGEI---------VV---------NDEYHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 172 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~---------~~---------~~~~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
.+..+..|+++.|.|.+.+.+.+.+.|++.+.. +. ....+.|.+.+++.+|+|.|.|.+.
T Consensus 5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~ 82 (95)
T cd05717 5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLY 82 (95)
T ss_pred CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEe
Confidence 345678999999999998888889999752111 11 1234678888999999999999874
No 217
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.75 E-value=5.4e-07 Score=54.67 Aligned_cols=80 Identities=20% Similarity=0.280 Sum_probs=60.0
Q ss_pred CCceEeecCCcEEEEeeeccCCCCe-EEEEeCCeeeCCCCc--EEe-------eCCeEEECCCCCCCCeEEEEEeEeCCC
Q psy15206 81 PQLSVAKEGQSVQLECHAEGHPIPT-ISWRRENNAILPNGQ--TIF-------TGSTLQIPRITKEDRGAYYCVAQNGIG 150 (232)
Q Consensus 81 ~~~~~~~~g~~~~l~C~~~~~~~~~-~~W~~~~~~~~~~~~--~~~-------~~~~l~i~~~~~~~~g~y~C~~~~~~~ 150 (232)
.....+.+|+++.|.|.+.++|.|. +.|.+++..+..... ... ..+.|.+.+++.++.|.|+|.+.|...
T Consensus 10 ~~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~ 89 (101)
T cd05860 10 NTTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDA 89 (101)
T ss_pred CceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCC
Confidence 3456788999999999999999997 999988765422111 111 125799999999999999999999876
Q ss_pred CceeeEEEEEE
Q psy15206 151 RGARRKIEVKV 161 (232)
Q Consensus 151 ~~~~~~~~l~v 161 (232)
. .+..+.+.|
T Consensus 90 ~-~s~tF~l~v 99 (101)
T cd05860 90 S-ASVTFNVYV 99 (101)
T ss_pred e-EEEEEEEEE
Confidence 6 445555554
No 218
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.73 E-value=6e-08 Score=58.78 Aligned_cols=64 Identities=23% Similarity=0.382 Sum_probs=47.9
Q ss_pred eEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCC-cEEeeCCeEEECCCCCCCCeEEEEEeEeC
Q psy15206 84 SVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNG-QTIFTGSTLQIPRITKEDRGAYYCVAQNG 148 (232)
Q Consensus 84 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~-~~~~~~~~l~i~~~~~~~~g~y~C~~~~~ 148 (232)
..+..|++++|.|... .+...+.|+++|....... ........+.|.+++.+|+|.|+|...+.
T Consensus 11 ~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 11 SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CccCCCCcEEEEEecC-CCCCEEEEEECCCCccccccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 4677899999999885 5666799999987533211 11122346899999999999999999875
No 219
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.73 E-value=3.7e-08 Score=58.26 Aligned_cols=57 Identities=18% Similarity=0.211 Sum_probs=44.9
Q ss_pred eeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCeEE-----EEEeccccCCceEEEEec
Q psy15206 173 RIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHS-----ISNFGTSEGTTGSLQCKV 230 (232)
Q Consensus 173 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~~~-----~~~~~~~~~d~g~Y~C~~ 230 (232)
...+..|+++.|.|...+. .+.+.|+++|..+..+.++. +.+..+...|+|.|.|.+
T Consensus 5 ~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~~GLlI~~~~~~dsG~Y~C~s 66 (85)
T cd05872 5 NRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGTDGLLILVTSPEHSGTYRCYS 66 (85)
T ss_pred EEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeCCCCEEEECCHhhCEEEEEEE
Confidence 4567899999999999776 56999999999886554443 334456779999999986
No 220
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.71 E-value=6.6e-07 Score=54.23 Aligned_cols=67 Identities=15% Similarity=0.323 Sum_probs=49.6
Q ss_pred CceEeecCCcEEEEeeeccCCCCeEEEEeCCeee--------CCCCcEEee-----CCeEEECCCCCCCCeEEEEEeEeC
Q psy15206 82 QLSVAKEGQSVQLECHAEGHPIPTISWRRENNAI--------LPNGQTIFT-----GSTLQIPRITKEDRGAYYCVAQNG 148 (232)
Q Consensus 82 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~--------~~~~~~~~~-----~~~l~i~~~~~~~~g~y~C~~~~~ 148 (232)
.+..+.+|+++.|.|.+.+.....+.|++.+..+ ..+.++... .-+|.|.+++.+|.|.|.|.+...
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~ 84 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD 84 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence 4577889999999999988766678888766432 122333321 126999999999999999998764
No 221
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.69 E-value=2.8e-07 Score=57.07 Aligned_cols=76 Identities=21% Similarity=0.368 Sum_probs=50.5
Q ss_pred eEeecCCcEEEEeeeccCCCCeEEEEeCCee-----e----CC----------CCc-EEeeCCeEEECCCCCCCCeEEEE
Q psy15206 84 SVAKEGQSVQLECHAEGHPIPTISWRRENNA-----I----LP----------NGQ-TIFTGSTLQIPRITKEDRGAYYC 143 (232)
Q Consensus 84 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~-----~----~~----------~~~-~~~~~~~l~i~~~~~~~~g~y~C 143 (232)
..+.+|+++.|.|.........+.|++.... + .. ..+ ....+++|.|.+++..|.|.|.|
T Consensus 8 ~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~Y~~ 87 (105)
T cd05774 8 PQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGFYTL 87 (105)
T ss_pred CcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEEEEE
Confidence 3456899999999765444447999995321 1 00 111 12335789999999999999999
Q ss_pred EeEeCCCCceeeEEEE
Q psy15206 144 VAQNGIGRGARRKIEV 159 (232)
Q Consensus 144 ~~~~~~~~~~~~~~~l 159 (232)
.+.+.........+.+
T Consensus 88 ~v~~~~~~~~~~~v~l 103 (105)
T cd05774 88 QTITTNFQVEQATVHL 103 (105)
T ss_pred EEEeCCccEEEEEEEE
Confidence 9998754434343333
No 222
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.66 E-value=7.4e-08 Score=58.16 Aligned_cols=61 Identities=13% Similarity=0.237 Sum_probs=45.8
Q ss_pred cceeeeeccCeEEEEEE-eecCCCCeEEEeeCCEE-ecCCCe------EEEEEeccccCCce-EEEEecC
Q psy15206 171 STRIGQALHHDMDLDCH-IEAYPHPILYWAKDGEI-VVNDEY------HSISNFGTSEGTTG-SLQCKVP 231 (232)
Q Consensus 171 ~~~~~~~~g~~~~l~C~-~~~~p~~~~~W~~~g~~-~~~~~~------~~~~~~~~~~~d~g-~Y~C~~~ 231 (232)
.....+.+|+.+.|.|. ..|.|.|.|.|++++.. +..+.+ -.|.+.++...|+| .|.|.|.
T Consensus 10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~ 79 (95)
T cd05845 10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAH 79 (95)
T ss_pred cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEE
Confidence 35567889999999997 69999999999987543 222222 34555567789999 7999875
No 223
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.65 E-value=2.5e-07 Score=56.02 Aligned_cols=59 Identities=8% Similarity=0.132 Sum_probs=45.5
Q ss_pred eeeeeccCeEEEEEEeecCCCCeEEEeeCCEEe--------c----------CCCeEEEEEeccccCCceEEEEecC
Q psy15206 173 RIGQALHHDMDLDCHIEAYPHPILYWAKDGEIV--------V----------NDEYHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 173 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~--------~----------~~~~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
++.+.+|+++.|.|.+.+.....+.|++-|..+ . ....+.|.+.++..+|+|.|.|.+.
T Consensus 6 nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~ 82 (95)
T cd05881 6 DVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLY 82 (95)
T ss_pred ceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEE
Confidence 456789999999999988766668887655322 1 2356778888889999999999874
No 224
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.64 E-value=4.2e-07 Score=53.93 Aligned_cols=58 Identities=28% Similarity=0.423 Sum_probs=42.0
Q ss_pred EEEEeeecc-CCCCeEEEEeCCeeeCCCCc---------EEeeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206 92 VQLECHAEG-HPIPTISWRRENNAILPNGQ---------TIFTGSTLQIPRITKEDRGAYYCVAQNGI 149 (232)
Q Consensus 92 ~~l~C~~~~-~~~~~~~W~~~~~~~~~~~~---------~~~~~~~l~i~~~~~~~~g~y~C~~~~~~ 149 (232)
+.|.|.+.| .|.+.+.|++++..+..... .....+.|.+.....+|.|.|+|.+.|..
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~ 69 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEA 69 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCcc
Confidence 689999987 67789999999987542211 01112357777777788899999999864
No 225
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.64 E-value=2.3e-07 Score=56.27 Aligned_cols=60 Identities=22% Similarity=0.246 Sum_probs=46.7
Q ss_pred ceeeeeccCeEEEEEEeecCCCCe-EEEeeCCEEecCCC------------e--EEEEEeccccCCceEEEEecC
Q psy15206 172 TRIGQALHHDMDLDCHIEAYPHPI-LYWAKDGEIVVNDE------------Y--HSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 172 ~~~~~~~g~~~~l~C~~~~~p~~~-~~W~~~g~~~~~~~------------~--~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
....+..|+++.|.|.++++|+|. +.|.+++..+.... + ..|.+..+...|+|.|+|.|.
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~ 85 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVS 85 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEE
Confidence 456788999999999999999997 99999876543211 2 245556677799999999874
No 226
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.62 E-value=2.3e-07 Score=58.39 Aligned_cols=62 Identities=10% Similarity=0.230 Sum_probs=47.4
Q ss_pred ccceeeeeccCeEEEEEEeecCCCCeEEEeeCCE---E-------------------ec---CCCeEEEEEeccccCCce
Q psy15206 170 QSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGE---I-------------------VV---NDEYHSISNFGTSEGTTG 224 (232)
Q Consensus 170 ~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~---~-------------------~~---~~~~~~~~~~~~~~~d~g 224 (232)
.+..+.+..|++++|.|...+.+...+.|+|... . +. ....+.|.+.+++.+|+|
T Consensus 4 ~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG 83 (109)
T cd04983 4 SPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSA 83 (109)
T ss_pred cCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCE
Confidence 3556678899999999999877777899998531 0 11 124678888889999999
Q ss_pred EEEEecC
Q psy15206 225 SLQCKVP 231 (232)
Q Consensus 225 ~Y~C~~~ 231 (232)
.|.|.+.
T Consensus 84 ~Y~C~~~ 90 (109)
T cd04983 84 VYFCALS 90 (109)
T ss_pred EEEEEEe
Confidence 9999974
No 227
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.62 E-value=4.4e-07 Score=53.98 Aligned_cols=59 Identities=15% Similarity=0.440 Sum_probs=46.3
Q ss_pred eeeeeccCeEEEEEEeecCCCCeEEEeeC-CEEecC---------CCeEEEEEeccccCCceEEEEecC
Q psy15206 173 RIGQALHHDMDLDCHIEAYPHPILYWAKD-GEIVVN---------DEYHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 173 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~-g~~~~~---------~~~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
...+..|+++.|.|.+.+.+.+.+.|+++ +..+.. .....+.+.++...|+|.|.|.+.
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~ 71 (86)
T smart00410 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAAT 71 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEE
Confidence 34567899999999998887889999998 665531 113567777888899999999874
No 228
>smart00409 IG Immunoglobulin.
Probab=98.62 E-value=4.4e-07 Score=53.98 Aligned_cols=59 Identities=15% Similarity=0.440 Sum_probs=46.3
Q ss_pred eeeeeccCeEEEEEEeecCCCCeEEEeeC-CEEecC---------CCeEEEEEeccccCCceEEEEecC
Q psy15206 173 RIGQALHHDMDLDCHIEAYPHPILYWAKD-GEIVVN---------DEYHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 173 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~-g~~~~~---------~~~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
...+..|+++.|.|.+.+.+.+.+.|+++ +..+.. .....+.+.++...|+|.|.|.+.
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~ 71 (86)
T smart00409 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAAT 71 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEE
Confidence 34567899999999998887889999998 665531 113567777888899999999874
No 229
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.62 E-value=2e-07 Score=55.81 Aligned_cols=53 Identities=11% Similarity=0.227 Sum_probs=39.9
Q ss_pred cCeEEEEEEeecCCCC--eEEEeeCCEEec-----C----------CCeEEEEEeccccCCceEEEEecC
Q psy15206 179 HHDMDLDCHIEAYPHP--ILYWAKDGEIVV-----N----------DEYHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 179 g~~~~l~C~~~~~p~~--~~~W~~~g~~~~-----~----------~~~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
|+++.|.|.+.+.+.+ .+.|.+.+.... . .....|.+.++...|+|.|+|.|+
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~ 70 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTAS 70 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEe
Confidence 6889999999876644 689988764321 1 123467888899999999999974
No 230
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.61 E-value=3.8e-07 Score=55.45 Aligned_cols=71 Identities=25% Similarity=0.416 Sum_probs=48.8
Q ss_pred CCcEEEEeeeccCCCCeEEEEeCCeeeCCC------------------CcE-EeeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206 89 GQSVQLECHAEGHPIPTISWRRENNAILPN------------------GQT-IFTGSTLQIPRITKEDRGAYYCVAQNGI 149 (232)
Q Consensus 89 g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~------------------~~~-~~~~~~l~i~~~~~~~~g~y~C~~~~~~ 149 (232)
|+++.|.|.........+.|++........ .+. ...+.+|.|.+++.+|+|.|.|.+....
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~ 80 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTN 80 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcCC
Confidence 688999998876555679999865332110 111 1134689999999999999999999876
Q ss_pred CCceeeEEEE
Q psy15206 150 GRGARRKIEV 159 (232)
Q Consensus 150 ~~~~~~~~~l 159 (232)
+......+.|
T Consensus 81 ~~~~~~~~~l 90 (92)
T cd05741 81 GVTENAKFFL 90 (92)
T ss_pred CcEEEEEEEE
Confidence 5534444433
No 231
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.61 E-value=1.8e-07 Score=56.52 Aligned_cols=57 Identities=14% Similarity=0.238 Sum_probs=41.4
Q ss_pred eeeeccCeEEEEEEeecCCCCeEEEeeCC--EE----ecCCCe-----EEEEEeccccCCceEEEEecC
Q psy15206 174 IGQALHHDMDLDCHIEAYPHPILYWAKDG--EI----VVNDEY-----HSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 174 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~g--~~----~~~~~~-----~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
+...+|+++.|.|.. +.|.+.+.|+|++ .. +....+ ..|.+.++..+|+|.|.|.+.
T Consensus 6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~ 73 (91)
T cd05871 6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTCTAV 73 (91)
T ss_pred EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCEEEEEEEE
Confidence 456789999999997 5788899999832 11 111122 246677788899999999984
No 232
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.61 E-value=1.7e-07 Score=54.67 Aligned_cols=50 Identities=18% Similarity=0.316 Sum_probs=37.2
Q ss_pred EEEEEEe-ecCCCCeEEEeeCCEEecCC-------CeE----EEEEeccccCCceEEEEecC
Q psy15206 182 MDLDCHI-EAYPHPILYWAKDGEIVVND-------EYH----SISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 182 ~~l~C~~-~~~p~~~~~W~~~g~~~~~~-------~~~----~~~~~~~~~~d~g~Y~C~~~ 231 (232)
+.|+|.. .|.|++.+.|+|||..+... ..+ .|.+......|.+.|+|+|.
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~ 63 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEAS 63 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEE
Confidence 6899996 67888899999999987532 112 34445556688899999984
No 233
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.56 E-value=3.2e-07 Score=57.78 Aligned_cols=61 Identities=11% Similarity=0.220 Sum_probs=45.8
Q ss_pred ccceeeeeccCeEEEEEEeecCCCCeEEEeeCCE--E---e-----------------------cCCCeEEEEEeccccC
Q psy15206 170 QSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGE--I---V-----------------------VNDEYHSISNFGTSEG 221 (232)
Q Consensus 170 ~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~--~---~-----------------------~~~~~~~~~~~~~~~~ 221 (232)
.|....+.+|++++|.|...+ +...+.|+|... . + .....+.|.+.++..+
T Consensus 4 ~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~ 82 (110)
T cd05899 4 SPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPE 82 (110)
T ss_pred CCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChh
Confidence 455667889999999999987 667899998531 0 0 0113467788888889
Q ss_pred CceEEEEecC
Q psy15206 222 TTGSLQCKVP 231 (232)
Q Consensus 222 d~g~Y~C~~~ 231 (232)
|+|.|.|.+.
T Consensus 83 Dsg~Y~Ca~~ 92 (110)
T cd05899 83 DSAVYLCASS 92 (110)
T ss_pred hCEEEEEEee
Confidence 9999999875
No 234
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=98.56 E-value=2e-06 Score=56.56 Aligned_cols=95 Identities=22% Similarity=0.309 Sum_probs=57.5
Q ss_pred eeeEEEEeeee------cCceeecCCcEEecCCCCceEeecCCcEEEEeeeccC-CC-CeEEEEeCCeeeCC-----CC-
Q psy15206 54 LGRLHLAIPYT------SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGH-PI-PTISWRRENNAILP-----NG- 119 (232)
Q Consensus 54 ~~~~~~~~~~~------~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~~~W~~~~~~~~~-----~~- 119 (232)
.|.|.|...+. .+.|.|..+|.... .+.......|+.+.|.|.+.|. |. ..+.|++++..... ..
T Consensus 13 ~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~-~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~ 91 (139)
T cd05771 13 EGTYICSVSTPPHQAQQIIQLSVSEPPRVRL-SLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPGDSPPPVSLSNV 91 (139)
T ss_pred CEEEEEEEEccCcceeeEEEEEEecCCceEE-eCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCCCccceeccCCe
Confidence 45555554222 55677777776643 2333333468889999999985 43 47999998754211 11
Q ss_pred ----------cEEeeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206 120 ----------QTIFTGSTLQIPRITKEDRGAYYCVAQNGI 149 (232)
Q Consensus 120 ----------~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~ 149 (232)
......+.|.+..-...+...|.|.+.+..
T Consensus 92 ~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~ 131 (139)
T cd05771 92 SFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS 131 (139)
T ss_pred EecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence 011112356666555556679999998854
No 235
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.56 E-value=4.4e-07 Score=55.25 Aligned_cols=64 Identities=14% Similarity=0.202 Sum_probs=46.3
Q ss_pred cEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEec---------CCCeEEEEEeccccCCceEEEEec
Q psy15206 165 PIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVV---------NDEYHSISNFGTSEGTTGSLQCKV 230 (232)
Q Consensus 165 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~---------~~~~~~~~~~~~~~~d~g~Y~C~~ 230 (232)
|.+...+. ..+..|++++|.|.... ....+.|+|+|.... ......+.+..++.+|+|.|.|..
T Consensus 2 P~l~a~p~-~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~ 74 (94)
T cd05711 2 PFLSAHPS-PVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYG 74 (94)
T ss_pred CEEEecCC-CccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEE
Confidence 55555454 45779999999998755 445799999885422 112446677788999999999985
No 236
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.55 E-value=1.7e-06 Score=50.65 Aligned_cols=72 Identities=18% Similarity=0.381 Sum_probs=48.3
Q ss_pred EEEEeeecc-CCCCeEEEEeCCeeeCCCCcE-------EeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEEe
Q psy15206 92 VQLECHAEG-HPIPTISWRRENNAILPNGQT-------IFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEF 163 (232)
Q Consensus 92 ~~l~C~~~~-~~~~~~~W~~~~~~~~~~~~~-------~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~ 163 (232)
+.|.|.+.| .|...|.|++++..+...... ....+.|.+..-..+|...|+|.+.|..-........|.|.+
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~y 81 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQY 81 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEEE
Confidence 679999877 677789999999887543211 112346777655666666999999986544355555665543
No 237
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.55 E-value=5.1e-07 Score=53.60 Aligned_cols=50 Identities=18% Similarity=0.480 Sum_probs=34.8
Q ss_pred EEEEEEeec-CCCCeEEEeeCCEEecCC----------CeE----EEEEeccccCCceEEEEecC
Q psy15206 182 MDLDCHIEA-YPHPILYWAKDGEIVVND----------EYH----SISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 182 ~~l~C~~~~-~p~~~~~W~~~g~~~~~~----------~~~----~~~~~~~~~~d~g~Y~C~~~ 231 (232)
+.|.|.+.| .|.+.+.|+|+|..+... ..+ .+.+......|.|.|+|.|.
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~ 66 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRAR 66 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEc
Confidence 689999987 588899999999865422 111 23333444467889999984
No 238
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.52 E-value=1.7e-07 Score=54.43 Aligned_cols=58 Identities=41% Similarity=0.693 Sum_probs=40.7
Q ss_pred CcEEEEeeeccCC-CCeEEEEeCCee-eCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEe
Q psy15206 90 QSVQLECHAEGHP-IPTISWRRENNA-ILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQN 147 (232)
Q Consensus 90 ~~~~l~C~~~~~~-~~~~~W~~~~~~-~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~ 147 (232)
..+.|.|.+.+.+ .+.++|+..... ...........+.|.|.++..+|.|.|+|.+.|
T Consensus 16 ~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 16 GSVTLTCSAEGGPPPPSISWYDSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEEEESSEESSEEEEEETEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred eeEEEEEEEccccCCeEEEEEecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 3399999998877 678999911111 011112233456899999999999999999976
No 239
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.48 E-value=2.7e-06 Score=53.39 Aligned_cols=74 Identities=24% Similarity=0.447 Sum_probs=48.8
Q ss_pred cCCcEEEEeeeccCC------------CCeEEEEeCCe--e---e-----------CCCCcEEe-------eCCeEEECC
Q psy15206 88 EGQSVQLECHAEGHP------------IPTISWRRENN--A---I-----------LPNGQTIF-------TGSTLQIPR 132 (232)
Q Consensus 88 ~g~~~~l~C~~~~~~------------~~~~~W~~~~~--~---~-----------~~~~~~~~-------~~~~l~i~~ 132 (232)
.|++++|.|...... .+.+.|++... . + ....+... .+.+|.|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 378999999986432 35799998421 0 0 00112221 245899999
Q ss_pred CCCCCCeEEEEEeEeCCCCceeeEEEEEEE
Q psy15206 133 ITKEDRGAYYCVAQNGIGRGARRKIEVKVE 162 (232)
Q Consensus 133 ~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~ 162 (232)
++.+|+|.|+|.+.++... ....+.|.|.
T Consensus 81 l~~sDsG~Y~C~V~~g~~~-~~~~v~l~v~ 109 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIED-NYDTVEVQVK 109 (112)
T ss_pred cccccCEEEEEEEecCCCC-ceeEEEEEEE
Confidence 9999999999999976554 4455555554
No 240
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.44 E-value=4.6e-06 Score=52.12 Aligned_cols=74 Identities=28% Similarity=0.520 Sum_probs=49.9
Q ss_pred cCCcEEEEeeeccCC------CCeEEEEeCC---e-e--eC--CCC----------cEE-----eeCCeEEECCCCCCCC
Q psy15206 88 EGQSVQLECHAEGHP------IPTISWRREN---N-A--IL--PNG----------QTI-----FTGSTLQIPRITKEDR 138 (232)
Q Consensus 88 ~g~~~~l~C~~~~~~------~~~~~W~~~~---~-~--~~--~~~----------~~~-----~~~~~l~i~~~~~~~~ 138 (232)
.|+++.|.|.....+ ...+.|++.. . . +. ... +.. ....+|.|.+++.+|.
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 478999999986542 4579999862 1 0 10 010 011 1235899999999999
Q ss_pred eEEEEEeEeCCCCceeeEEEEEEE
Q psy15206 139 GAYYCVAQNGIGRGARRKIEVKVE 162 (232)
Q Consensus 139 g~y~C~~~~~~~~~~~~~~~l~v~ 162 (232)
|.|.|.+.+..+. ..+.+.|.|.
T Consensus 81 G~Y~C~v~~~~~~-~~~~v~L~V~ 103 (106)
T cd05714 81 GRYRCEVIDGIED-EQDTVELEVR 103 (106)
T ss_pred EEEEEEEEcCCCc-eEEEEEEEEE
Confidence 9999999986543 5566676664
No 241
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.44 E-value=7.9e-07 Score=54.15 Aligned_cols=58 Identities=14% Similarity=0.066 Sum_probs=39.9
Q ss_pred eeeeccCeEEEEEEee-----------cCCCCeEEEeeCCEEecCCC------------eEEEEEeccccCCceEEEEec
Q psy15206 174 IGQALHHDMDLDCHIE-----------AYPHPILYWAKDGEIVVNDE------------YHSISNFGTSEGTTGSLQCKV 230 (232)
Q Consensus 174 ~~~~~g~~~~l~C~~~-----------~~p~~~~~W~~~g~~~~~~~------------~~~~~~~~~~~~d~g~Y~C~~ 230 (232)
..+.+|+.+.|.|... ......+.|+|++..+.... ...|.+..+..+|+|.|+|.+
T Consensus 10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~ 89 (104)
T cd05896 10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCVL 89 (104)
T ss_pred EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEEE
Confidence 4567899999999861 11233799999974433211 224555567889999999987
Q ss_pred C
Q psy15206 231 P 231 (232)
Q Consensus 231 ~ 231 (232)
.
T Consensus 90 r 90 (104)
T cd05896 90 R 90 (104)
T ss_pred C
Confidence 4
No 242
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.41 E-value=2.5e-06 Score=51.93 Aligned_cols=65 Identities=17% Similarity=0.259 Sum_probs=46.1
Q ss_pred CceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCC----cEEeeCCeEEECCCCCCCCeEEEEEeEe
Q psy15206 82 QLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNG----QTIFTGSTLQIPRITKEDRGAYYCVAQN 147 (232)
Q Consensus 82 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~----~~~~~~~~l~i~~~~~~~~g~y~C~~~~ 147 (232)
...++.+|++++|.|.... ....+.|++++....... ........+.|..++.+|+|.|.|....
T Consensus 8 p~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~ 76 (94)
T cd05711 8 PSPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY 76 (94)
T ss_pred CCCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence 3456778999999998754 445799999886532210 0011223689999999999999999753
No 243
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.41 E-value=3.1e-06 Score=53.16 Aligned_cols=69 Identities=25% Similarity=0.437 Sum_probs=50.0
Q ss_pred CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCee--e------------CCCCcEEe------eCCeEEECCCCCCCCe
Q psy15206 80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNA--I------------LPNGQTIF------TGSTLQIPRITKEDRG 139 (232)
Q Consensus 80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~--~------------~~~~~~~~------~~~~l~i~~~~~~~~g 139 (232)
.+....+.+|+++.|.|...+.+...+.|++.... . ....++.. ....|.|.+++.+|+|
T Consensus 4 ~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG 83 (109)
T cd04983 4 SPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSA 83 (109)
T ss_pred cCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCE
Confidence 34566788999999999998776778999985321 0 01122222 1237999999999999
Q ss_pred EEEEEeEeC
Q psy15206 140 AYYCVAQNG 148 (232)
Q Consensus 140 ~y~C~~~~~ 148 (232)
.|.|.+.+.
T Consensus 84 ~Y~C~~~~~ 92 (109)
T cd04983 84 VYFCALSES 92 (109)
T ss_pred EEEEEEecC
Confidence 999999864
No 244
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=98.39 E-value=3.2e-06 Score=51.39 Aligned_cols=65 Identities=23% Similarity=0.413 Sum_probs=41.5
Q ss_pred ccEEEeccceeeeeccCeEEEEEEeecCCCC--eEEEeeCCEEec-----------CCCeEE-EEEeccccCCceEEEEe
Q psy15206 164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHP--ILYWAKDGEIVV-----------NDEYHS-ISNFGTSEGTTGSLQCK 229 (232)
Q Consensus 164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~-----------~~~~~~-~~~~~~~~~d~g~Y~C~ 229 (232)
+|.+.+.+.... ++.++|.|.+.|+.++ .+.|+++|..+. .++.|. .+...+...+.+.|+|+
T Consensus 2 pP~v~v~~~~~~---~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~ 78 (93)
T cd07698 2 PPEVRVTRKRAP---DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCR 78 (93)
T ss_pred CCEEEEEecCCC---CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEE
Confidence 455555443322 6789999999997554 799999985321 122333 23334455688999999
Q ss_pred cC
Q psy15206 230 VP 231 (232)
Q Consensus 230 ~~ 231 (232)
|.
T Consensus 79 V~ 80 (93)
T cd07698 79 VE 80 (93)
T ss_pred EE
Confidence 73
No 245
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.38 E-value=8.9e-06 Score=50.82 Aligned_cols=74 Identities=20% Similarity=0.499 Sum_probs=49.3
Q ss_pred cCCcEEEEeeeccCC------CCeEEEEeCCee-------eCC-----------CCcEEee-----CCeEEECCCCCCCC
Q psy15206 88 EGQSVQLECHAEGHP------IPTISWRRENNA-------ILP-----------NGQTIFT-----GSTLQIPRITKEDR 138 (232)
Q Consensus 88 ~g~~~~l~C~~~~~~------~~~~~W~~~~~~-------~~~-----------~~~~~~~-----~~~l~i~~~~~~~~ 138 (232)
.|+++.|.|.....+ ...+.|++.... +.. ..+.... ..+|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 478999999876542 346999986411 000 1122211 23799999999999
Q ss_pred eEEEEEeEeCCCCceeeEEEEEEE
Q psy15206 139 GAYYCVAQNGIGRGARRKIEVKVE 162 (232)
Q Consensus 139 g~y~C~~~~~~~~~~~~~~~l~v~ 162 (232)
|.|.|.+.+..+. ....+.|.|.
T Consensus 81 G~Y~C~v~~~~~~-~~~~~~l~v~ 103 (106)
T cd05877 81 GRYRCEVIDGLED-ESVVVALRLR 103 (106)
T ss_pred EEEEEEEEecccc-eEEEEEEEEE
Confidence 9999999887655 4556666654
No 246
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.36 E-value=2.7e-06 Score=52.16 Aligned_cols=74 Identities=22% Similarity=0.352 Sum_probs=50.5
Q ss_pred cCCcEEEEeeecc-CCCCeEEEEeCCeeeCC-------C----------CcEEe--eCCeEEECCCCCCCCeEEEEEeEe
Q psy15206 88 EGQSVQLECHAEG-HPIPTISWRRENNAILP-------N----------GQTIF--TGSTLQIPRITKEDRGAYYCVAQN 147 (232)
Q Consensus 88 ~g~~~~l~C~~~~-~~~~~~~W~~~~~~~~~-------~----------~~~~~--~~~~l~i~~~~~~~~g~y~C~~~~ 147 (232)
.|+++.|.|.... .....+.|++....+.. . .+... .+.+|.|.+++.+|+|.|.|.+..
T Consensus 3 ~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~~ 82 (97)
T cd05775 3 LGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEINT 82 (97)
T ss_pred cCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEEc
Confidence 6899999998754 34456999986432210 0 01111 135899999999999999999998
Q ss_pred CCCCceeeEEEEEE
Q psy15206 148 GIGRGARRKIEVKV 161 (232)
Q Consensus 148 ~~~~~~~~~~~l~v 161 (232)
..+......+.|.|
T Consensus 83 ~~~~~~~~~f~L~v 96 (97)
T cd05775 83 KNGVTITKEFTLHI 96 (97)
T ss_pred CCCCeEEEEEEEEe
Confidence 76665556665554
No 247
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.36 E-value=1.6e-05 Score=50.30 Aligned_cols=68 Identities=15% Similarity=0.264 Sum_probs=45.7
Q ss_pred CceEeecCCcEEEEeeeccCC----CCeEEEEe---------------CCeeeCC-C----CcEE------eeCCeEEEC
Q psy15206 82 QLSVAKEGQSVQLECHAEGHP----IPTISWRR---------------ENNAILP-N----GQTI------FTGSTLQIP 131 (232)
Q Consensus 82 ~~~~~~~g~~~~l~C~~~~~~----~~~~~W~~---------------~~~~~~~-~----~~~~------~~~~~l~i~ 131 (232)
....+..|+.+.|.|...... ...+.|.. +|..... . ++.. ..+.+|.|.
T Consensus 6 ~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~ 85 (116)
T cd05879 6 REVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIH 85 (116)
T ss_pred ceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEc
Confidence 345666899999999986532 34699933 2322210 0 1211 123589999
Q ss_pred CCCCCCCeEEEEEeEeCC
Q psy15206 132 RITKEDRGAYYCVAQNGI 149 (232)
Q Consensus 132 ~~~~~~~g~y~C~~~~~~ 149 (232)
+++.+|.|.|+|.+.+..
T Consensus 86 nv~~sD~G~Y~C~v~n~p 103 (116)
T cd05879 86 NLDYTDNGTFTCDVKNPP 103 (116)
T ss_pred cCCcccCEEEEEEEEcCC
Confidence 999999999999999854
No 248
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.34 E-value=4.4e-06 Score=50.99 Aligned_cols=66 Identities=14% Similarity=0.269 Sum_probs=43.9
Q ss_pred EEEeccceeeeeccCeEEEEEEeec-CCCCe--EEEeeCCEEecCCC-----------eEEEEEeccccCCce-EEEEec
Q psy15206 166 IVTVQSTRIGQALHHDMDLDCHIEA-YPHPI--LYWAKDGEIVVNDE-----------YHSISNFGTSEGTTG-SLQCKV 230 (232)
Q Consensus 166 ~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~--~~W~~~g~~~~~~~-----------~~~~~~~~~~~~d~g-~Y~C~~ 230 (232)
.+.+.+.+..+.+|+.++|+|.+.| .|.+. +.|+|++..+.... ...+... .+.+|.| .|+|+|
T Consensus 3 ~V~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~-~~r~D~g~~~sC~A 81 (100)
T cd05755 3 SVELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITIT-VDREDHGANFSCET 81 (100)
T ss_pred eEEEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEe-cchhhCCcEEEEEE
Confidence 3445555556789999999999865 66665 79999988775321 1223322 3345556 999998
Q ss_pred CC
Q psy15206 231 PV 232 (232)
Q Consensus 231 ~~ 232 (232)
.+
T Consensus 82 ~l 83 (100)
T cd05755 82 EL 83 (100)
T ss_pred Ee
Confidence 53
No 249
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.34 E-value=4e-06 Score=52.39 Aligned_cols=63 Identities=6% Similarity=0.189 Sum_probs=45.6
Q ss_pred eccceeeeeccCeEEEEEEeecCC-CCeEEEeeCC--E---Eec------------------CCCeEEEEEeccccCCce
Q psy15206 169 VQSTRIGQALHHDMDLDCHIEAYP-HPILYWAKDG--E---IVV------------------NDEYHSISNFGTSEGTTG 224 (232)
Q Consensus 169 ~~~~~~~~~~g~~~~l~C~~~~~p-~~~~~W~~~g--~---~~~------------------~~~~~~~~~~~~~~~d~g 224 (232)
..|....+..|++++|.|.+.+.. ...+.|+|.. . .+. ....+.|.+.++..+|+|
T Consensus 5 Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg 84 (106)
T cd04980 5 QSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAA 84 (106)
T ss_pred ECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCE
Confidence 345566788999999999987665 4579999742 1 110 123467888889999999
Q ss_pred EEEEecC
Q psy15206 225 SLQCKVP 231 (232)
Q Consensus 225 ~Y~C~~~ 231 (232)
.|.|.+.
T Consensus 85 ~Y~Ca~~ 91 (106)
T cd04980 85 VYYCQQY 91 (106)
T ss_pred EEEEEEe
Confidence 9999863
No 250
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.34 E-value=1.4e-05 Score=46.84 Aligned_cols=63 Identities=17% Similarity=0.344 Sum_probs=47.0
Q ss_pred eEeecCCcEEEEeeeccCCC--CeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeC
Q psy15206 84 SVAKEGQSVQLECHAEGHPI--PTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNG 148 (232)
Q Consensus 84 ~~~~~g~~~~l~C~~~~~~~--~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~ 148 (232)
..+..|++++|.|.+...+. +.++|...+..... .......+|.+..+...|+|.++|.+...
T Consensus 9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~--~~~~~~ktL~~~qv~~qdSG~WtC~V~~~ 73 (88)
T cd07694 9 DHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ--ILNQDKKTLNLVQLGPNDSGTWDCIVSVN 73 (88)
T ss_pred CeeecCCcEEEEEecCCCCCCCccEEEeCCCCccce--eccCCccEEEeceeCcccCCEEEEEEEEC
Confidence 35668999999999865444 48999987655321 11224568999999999999999999754
No 251
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.33 E-value=5.3e-06 Score=52.20 Aligned_cols=68 Identities=29% Similarity=0.530 Sum_probs=48.8
Q ss_pred CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCe--eeC----------------CCCcEEe-----eCCeEEECCCCCC
Q psy15206 80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENN--AIL----------------PNGQTIF-----TGSTLQIPRITKE 136 (232)
Q Consensus 80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~--~~~----------------~~~~~~~-----~~~~l~i~~~~~~ 136 (232)
.+....+.+|+++.|.|...+ +...+.||+... .+. ...++.. ....|.|.+++.+
T Consensus 4 ~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~ 82 (110)
T cd05899 4 SPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPE 82 (110)
T ss_pred CCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChh
Confidence 455677889999999999877 667799998642 110 0112211 1347999999999
Q ss_pred CCeEEEEEeEeC
Q psy15206 137 DRGAYYCVAQNG 148 (232)
Q Consensus 137 ~~g~y~C~~~~~ 148 (232)
|+|.|.|.+...
T Consensus 83 Dsg~Y~Ca~~~~ 94 (110)
T cd05899 83 DSAVYLCASSLG 94 (110)
T ss_pred hCEEEEEEeeCC
Confidence 999999998754
No 252
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.33 E-value=2.2e-06 Score=53.44 Aligned_cols=57 Identities=9% Similarity=0.294 Sum_probs=43.1
Q ss_pred eeeccCeEEEEEEeecC-CCCeEEEeeCCE-----Eec-----------------------CCCeEEEEEeccccCCceE
Q psy15206 175 GQALHHDMDLDCHIEAY-PHPILYWAKDGE-----IVV-----------------------NDEYHSISNFGTSEGTTGS 225 (232)
Q Consensus 175 ~~~~g~~~~l~C~~~~~-p~~~~~W~~~g~-----~~~-----------------------~~~~~~~~~~~~~~~d~g~ 225 (232)
.+..|++++|.|...+. +...+.|+|... .+. ....+.|.+.++..+|+|.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~ 81 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV 81 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 45689999999998876 566799998432 010 1146788888999999999
Q ss_pred EEEecC
Q psy15206 226 LQCKVP 231 (232)
Q Consensus 226 Y~C~~~ 231 (232)
|.|.+.
T Consensus 82 Y~C~v~ 87 (105)
T cd00099 82 YYCAVS 87 (105)
T ss_pred EEEEEe
Confidence 999975
No 253
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.33 E-value=6.3e-06 Score=51.49 Aligned_cols=68 Identities=25% Similarity=0.462 Sum_probs=47.1
Q ss_pred CCCceEeecCCcEEEEeeeccCC-CCeEEEEeCCe--e---eC---------CCCcEEee----CCeEEECCCCCCCCeE
Q psy15206 80 SPQLSVAKEGQSVQLECHAEGHP-IPTISWRRENN--A---IL---------PNGQTIFT----GSTLQIPRITKEDRGA 140 (232)
Q Consensus 80 ~~~~~~~~~g~~~~l~C~~~~~~-~~~~~W~~~~~--~---~~---------~~~~~~~~----~~~l~i~~~~~~~~g~ 140 (232)
.+....+.+|+++.|.|.+.+.. ...+.|++... . +. ...++... ...|.|.++..+|+|.
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~ 85 (106)
T cd04980 6 SPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAV 85 (106)
T ss_pred CCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEE
Confidence 45566788999999999987654 45799997531 1 00 00122211 1369999999999999
Q ss_pred EEEEeEe
Q psy15206 141 YYCVAQN 147 (232)
Q Consensus 141 y~C~~~~ 147 (232)
|.|.+.+
T Consensus 86 Y~Ca~~~ 92 (106)
T cd04980 86 YYCQQYG 92 (106)
T ss_pred EEEEEeC
Confidence 9999864
No 254
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.32 E-value=1.3e-05 Score=50.28 Aligned_cols=75 Identities=27% Similarity=0.505 Sum_probs=49.4
Q ss_pred cCCcEEEEeeeccCC----------CCeEEEEeCC--eee--C------------CCCcEEe-------eCCeEEECCCC
Q psy15206 88 EGQSVQLECHAEGHP----------IPTISWRREN--NAI--L------------PNGQTIF-------TGSTLQIPRIT 134 (232)
Q Consensus 88 ~g~~~~l~C~~~~~~----------~~~~~W~~~~--~~~--~------------~~~~~~~-------~~~~l~i~~~~ 134 (232)
.|+++.|.|.....+ ...+.|++.. ... . ..++... ...+|.|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 378999999986533 2469999852 110 0 0112221 12479999999
Q ss_pred CCCCeEEEEEeEeCCCCceeeEEEEEEEe
Q psy15206 135 KEDRGAYYCVAQNGIGRGARRKIEVKVEF 163 (232)
Q Consensus 135 ~~~~g~y~C~~~~~~~~~~~~~~~l~v~~ 163 (232)
.+|.|.|.|.+...... ..+.+.|.|..
T Consensus 81 ~sD~G~Y~C~v~~~~~~-~~~~v~l~V~g 108 (110)
T cd05878 81 SSDSGVYRCEVMHGIED-EQDTVPLEVTG 108 (110)
T ss_pred hhhCEEEEEEEEeCCCc-ceEEEEEEEEE
Confidence 99999999999985433 55666776653
No 255
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.30 E-value=1.5e-05 Score=48.93 Aligned_cols=71 Identities=28% Similarity=0.540 Sum_probs=46.0
Q ss_pred CcEEEEeeeccCC---CCeEEEEeCCee----e-----------CC--CCcEEe-----eCCeEEECCCCCCCCeEEEEE
Q psy15206 90 QSVQLECHAEGHP---IPTISWRRENNA----I-----------LP--NGQTIF-----TGSTLQIPRITKEDRGAYYCV 144 (232)
Q Consensus 90 ~~~~l~C~~~~~~---~~~~~W~~~~~~----~-----------~~--~~~~~~-----~~~~l~i~~~~~~~~g~y~C~ 144 (232)
+++.|.|...... ...+.|++.... + .. ..+... ...+|.|.+++.+|.|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 4689999986543 336999986531 0 00 011111 235899999999999999999
Q ss_pred eEe-CCCCceeeEEEEEE
Q psy15206 145 AQN-GIGRGARRKIEVKV 161 (232)
Q Consensus 145 ~~~-~~~~~~~~~~~l~v 161 (232)
+.. ..|. ..+.+.|.|
T Consensus 81 v~~~~~g~-~~~~~~l~V 97 (98)
T cd05718 81 FATFPQGN-RQKVTTLTV 97 (98)
T ss_pred EEeCCCCc-EEEEEEEEe
Confidence 876 4444 555555554
No 256
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.30 E-value=4e-06 Score=52.28 Aligned_cols=65 Identities=29% Similarity=0.489 Sum_probs=45.8
Q ss_pred EeecCCcEEEEeeeccC-CCCeEEEEeCCee-----eC------------CCCcEEe------eCCeEEECCCCCCCCeE
Q psy15206 85 VAKEGQSVQLECHAEGH-PIPTISWRRENNA-----IL------------PNGQTIF------TGSTLQIPRITKEDRGA 140 (232)
Q Consensus 85 ~~~~g~~~~l~C~~~~~-~~~~~~W~~~~~~-----~~------------~~~~~~~------~~~~l~i~~~~~~~~g~ 140 (232)
.+.+|+++.|.|..... ....+.|++.... +. ...+... ...+|.|.+++.+|.|.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~ 81 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV 81 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 45689999999998765 5567999985431 00 0111111 12379999999999999
Q ss_pred EEEEeEeCC
Q psy15206 141 YYCVAQNGI 149 (232)
Q Consensus 141 y~C~~~~~~ 149 (232)
|.|.+.+..
T Consensus 82 Y~C~v~~~~ 90 (105)
T cd00099 82 YYCAVSLSG 90 (105)
T ss_pred EEEEEecCC
Confidence 999998754
No 257
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.30 E-value=2.3e-06 Score=52.34 Aligned_cols=55 Identities=18% Similarity=0.350 Sum_probs=37.9
Q ss_pred eccCeEEEEEEeecC-CC-CeEEEeeCCEEecCCC-----------eEEE----EEeccccCCceEEEEecC
Q psy15206 177 ALHHDMDLDCHIEAY-PH-PILYWAKDGEIVVNDE-----------YHSI----SNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 177 ~~g~~~~l~C~~~~~-p~-~~~~W~~~g~~~~~~~-----------~~~~----~~~~~~~~d~g~Y~C~~~ 231 (232)
..|+.+.|.|.+.|+ |. ..+.|+++|..+.... .|.. .+......+.|.|+|+|.
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~ 82 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVT 82 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEE
Confidence 468899999999998 53 4799999987764322 2222 222222358999999874
No 258
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.28 E-value=2.1e-05 Score=52.87 Aligned_cols=82 Identities=18% Similarity=0.371 Sum_probs=58.1
Q ss_pred ceEeecCCcEEEEeeec-cCCCCeEEEEeCCeeeC----------C--CCcEEe-----eCCeEEECCCCCCCCeEEEEE
Q psy15206 83 LSVAKEGQSVQLECHAE-GHPIPTISWRRENNAIL----------P--NGQTIF-----TGSTLQIPRITKEDRGAYYCV 144 (232)
Q Consensus 83 ~~~~~~g~~~~l~C~~~-~~~~~~~~W~~~~~~~~----------~--~~~~~~-----~~~~l~i~~~~~~~~g~y~C~ 144 (232)
...+.+|+++.|.|... +...+.+.|++..+.+. . ..+... ....|.|.+++.+|.|.|.|.
T Consensus 24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~ 103 (189)
T PHA02987 24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI 103 (189)
T ss_pred EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence 35678899999999974 55567799998643221 0 112222 356899999999999999999
Q ss_pred eEe-CCCCceeeEEEEEEEec
Q psy15206 145 AQN-GIGRGARRKIEVKVEFA 164 (232)
Q Consensus 145 ~~~-~~~~~~~~~~~l~v~~~ 164 (232)
+.. ..|...+....|.|...
T Consensus 104 F~tfp~G~~~~gt~CLtVt~~ 124 (189)
T PHA02987 104 FNTLLSKNNEKGVVCLNVTTD 124 (189)
T ss_pred EEecCCCCCceeEEEEEEEch
Confidence 876 44534667778877643
No 259
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.28 E-value=1.9e-06 Score=52.33 Aligned_cols=53 Identities=9% Similarity=0.034 Sum_probs=38.8
Q ss_pred cCeEEEEEEeecCCCCeEEEeeCCEEe-----c-------------------CCCeEEEEEeccccCCceEEEEecC
Q psy15206 179 HHDMDLDCHIEAYPHPILYWAKDGEIV-----V-------------------NDEYHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 179 g~~~~l~C~~~~~p~~~~~W~~~g~~~-----~-------------------~~~~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
|++|+|.|.........+.|+++.... . -.....|.+.+.+.+|+|.|.|.+.
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~ 77 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQII 77 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEE
Confidence 688999998876555679998864211 0 0122578888899999999999874
No 260
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.27 E-value=5.7e-06 Score=52.61 Aligned_cols=61 Identities=8% Similarity=0.299 Sum_probs=45.0
Q ss_pred cceeeeeccCeEEEEEEeec--CCCCeEEEeeC--CEE----e---------------------c-CC--CeEEEEEecc
Q psy15206 171 STRIGQALHHDMDLDCHIEA--YPHPILYWAKD--GEI----V---------------------V-ND--EYHSISNFGT 218 (232)
Q Consensus 171 ~~~~~~~~g~~~~l~C~~~~--~p~~~~~W~~~--g~~----~---------------------~-~~--~~~~~~~~~~ 218 (232)
|....+..|++++|.|...+ .+.+.+.|+|. |.. + . .. ..+.|.+.++
T Consensus 5 p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~ 84 (116)
T cd04982 5 QLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNL 84 (116)
T ss_pred CCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEEC
Confidence 44556778999999999877 56678999984 210 0 0 11 4567788888
Q ss_pred ccCCceEEEEecC
Q psy15206 219 SEGTTGSLQCKVP 231 (232)
Q Consensus 219 ~~~d~g~Y~C~~~ 231 (232)
+.+|+|.|.|.+.
T Consensus 85 ~~~Dsg~Y~C~~~ 97 (116)
T cd04982 85 EKEDSATYYCAYW 97 (116)
T ss_pred CHHHCEEEEEEEe
Confidence 8899999999874
No 261
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.26 E-value=1.9e-05 Score=48.72 Aligned_cols=72 Identities=25% Similarity=0.407 Sum_probs=45.1
Q ss_pred CCcEEEEeeeccCC---CCeEEEEeCCeee-----------C------CCCcEEe-------eCCeEEECCCCCCCCeEE
Q psy15206 89 GQSVQLECHAEGHP---IPTISWRRENNAI-----------L------PNGQTIF-------TGSTLQIPRITKEDRGAY 141 (232)
Q Consensus 89 g~~~~l~C~~~~~~---~~~~~W~~~~~~~-----------~------~~~~~~~-------~~~~l~i~~~~~~~~g~y 141 (232)
|+++.|.|...... ...+.|++..... . ...+... ...+|.|.+++.+|.|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 67889999875321 2357787754210 0 0012111 124799999999999999
Q ss_pred EEEeEeCCCCceeeEEEEEE
Q psy15206 142 YCVAQNGIGRGARRKIEVKV 161 (232)
Q Consensus 142 ~C~~~~~~~~~~~~~~~l~v 161 (232)
+|.+.+..+. ....+.|.|
T Consensus 81 ~C~v~~~~~~-~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFY-EEATVELKV 99 (100)
T ss_pred EEEEecCCcE-EEEEEEEEE
Confidence 9999976554 555555544
No 262
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.24 E-value=2e-05 Score=49.98 Aligned_cols=70 Identities=21% Similarity=0.501 Sum_probs=45.8
Q ss_pred CCceEeecCCcEEEEeeeccCC----CCeEEEEeC----Cee--eC---------CCCc----EEe------eCCeEEEC
Q psy15206 81 PQLSVAKEGQSVQLECHAEGHP----IPTISWRRE----NNA--IL---------PNGQ----TIF------TGSTLQIP 131 (232)
Q Consensus 81 ~~~~~~~~g~~~~l~C~~~~~~----~~~~~W~~~----~~~--~~---------~~~~----~~~------~~~~l~i~ 131 (232)
+..+.+..|+++.|.|.....+ ...+.|++. +.. +. ...+ ... .+.+|.|.
T Consensus 5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~ 84 (115)
T cd05880 5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW 84 (115)
T ss_pred CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence 4456777899999999975432 235999742 111 10 0101 111 13479999
Q ss_pred CCCCCCCeEEEEEeEeCCC
Q psy15206 132 RITKEDRGAYYCVAQNGIG 150 (232)
Q Consensus 132 ~~~~~~~g~y~C~~~~~~~ 150 (232)
+++.+|.|.|.|.+.+...
T Consensus 85 ~v~~~D~G~Y~C~v~~~~~ 103 (115)
T cd05880 85 QLQPTDNGTYTCQVKNPPD 103 (115)
T ss_pred eCChhhCEEEEEEEEeCCC
Confidence 9999999999999997543
No 263
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=98.20 E-value=1.4e-05 Score=48.43 Aligned_cols=54 Identities=20% Similarity=0.322 Sum_probs=35.7
Q ss_pred ccCeEEEEEEeecCCCC--eEEEeeCCEEecC-----------CCeEEEE-EeccccCCceEEEEecC
Q psy15206 178 LHHDMDLDCHIEAYPHP--ILYWAKDGEIVVN-----------DEYHSIS-NFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 178 ~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~~-----------~~~~~~~-~~~~~~~d~g~Y~C~~~ 231 (232)
.++..+|.|.+.|+.+. .+.|.+||..+.. +..|.+. .......+...|+|.|.
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~~~~~~~ytC~V~ 81 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFTPEEGDIYSCIVE 81 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEECCCCCeEEEEEE
Confidence 45668999999997554 5899999987642 2333322 22233355668999874
No 264
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.19 E-value=1.5e-05 Score=50.38 Aligned_cols=61 Identities=16% Similarity=0.301 Sum_probs=42.7
Q ss_pred cceeeeeccCeEEEEEEeecCC----CCeEEEe---------------eCCEEec----------------CCCeEEEEE
Q psy15206 171 STRIGQALHHDMDLDCHIEAYP----HPILYWA---------------KDGEIVV----------------NDEYHSISN 215 (232)
Q Consensus 171 ~~~~~~~~g~~~~l~C~~~~~p----~~~~~W~---------------~~g~~~~----------------~~~~~~~~~ 215 (232)
+..+.+..|+++.|.|...... ...+.|. ++|.... ......|.+
T Consensus 5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I 84 (116)
T cd05879 5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVI 84 (116)
T ss_pred cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEE
Confidence 4455678899999999976542 3479993 2333321 123457888
Q ss_pred eccccCCceEEEEecC
Q psy15206 216 FGTSEGTTGSLQCKVP 231 (232)
Q Consensus 216 ~~~~~~d~g~Y~C~~~ 231 (232)
.+++.+|.|+|+|.+.
T Consensus 85 ~nv~~sD~G~Y~C~v~ 100 (116)
T cd05879 85 HNLDYTDNGTFTCDVK 100 (116)
T ss_pred ccCCcccCEEEEEEEE
Confidence 8899999999999874
No 265
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=98.18 E-value=1.9e-05 Score=48.03 Aligned_cols=55 Identities=24% Similarity=0.377 Sum_probs=36.8
Q ss_pred eccCeEEEEEEeecCCCC--eEEEeeCCEEecCC-----------CeEEEE-EeccccCCceEEEEecC
Q psy15206 177 ALHHDMDLDCHIEAYPHP--ILYWAKDGEIVVND-----------EYHSIS-NFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 177 ~~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~~~-----------~~~~~~-~~~~~~~d~g~Y~C~~~ 231 (232)
..|+.++|.|.+.|+.++ .+.|++||..+..+ ..|.+. .......+...|+|+|.
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~ 80 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVE 80 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEE
Confidence 357889999999996555 58999999876432 123322 22333355668999874
No 266
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.17 E-value=4e-05 Score=45.42 Aligned_cols=59 Identities=17% Similarity=0.412 Sum_probs=39.5
Q ss_pred EEEEeeecc-CCCCeEEEEeCCeeeCCCCcE---------EeeCCeEEECCCCCCCCeEEEEEeEeCCC
Q psy15206 92 VQLECHAEG-HPIPTISWRRENNAILPNGQT---------IFTGSTLQIPRITKEDRGAYYCVAQNGIG 150 (232)
Q Consensus 92 ~~l~C~~~~-~~~~~~~W~~~~~~~~~~~~~---------~~~~~~l~i~~~~~~~~g~y~C~~~~~~~ 150 (232)
+.|.|.+.+ +|...|.|+++|..+...... ....+.|.+.....++...|.|.+.+...
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l 70 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESL 70 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECccc
Confidence 679999987 577889999999876432211 11123444544555666799999998653
No 267
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.16 E-value=5e-05 Score=48.24 Aligned_cols=70 Identities=21% Similarity=0.451 Sum_probs=46.0
Q ss_pred CCceEeecCCcEEEEeeeccCC----CCeEEEEeCCe------eeC----------CCCcE----Ee------eCCeEEE
Q psy15206 81 PQLSVAKEGQSVQLECHAEGHP----IPTISWRRENN------AIL----------PNGQT----IF------TGSTLQI 130 (232)
Q Consensus 81 ~~~~~~~~g~~~~l~C~~~~~~----~~~~~W~~~~~------~~~----------~~~~~----~~------~~~~l~i 130 (232)
+....+..|+++.|.|...... ...+.|++... .+. ...++ .. .+.+|.|
T Consensus 5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 84 (116)
T cd05715 5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI 84 (116)
T ss_pred CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence 4556777999999999875432 24599976321 000 01111 11 1247999
Q ss_pred CCCCCCCCeEEEEEeEeCCC
Q psy15206 131 PRITKEDRGAYYCVAQNGIG 150 (232)
Q Consensus 131 ~~~~~~~~g~y~C~~~~~~~ 150 (232)
.+++.+|.|.|.|.+.+...
T Consensus 85 ~~v~~~D~G~Y~C~v~~~~~ 104 (116)
T cd05715 85 HNLQFTDNGTYTCDVKNPPD 104 (116)
T ss_pred eeCCcccCEEEEEEEEeCCC
Confidence 99999999999999997543
No 268
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.15 E-value=1.4e-05 Score=50.88 Aligned_cols=68 Identities=28% Similarity=0.494 Sum_probs=47.7
Q ss_pred CCCceEeecCCcEEEEeeecc--CCCCeEEEEeCC--eee------C-----------CCCcEEe------eCCeEEECC
Q psy15206 80 SPQLSVAKEGQSVQLECHAEG--HPIPTISWRREN--NAI------L-----------PNGQTIF------TGSTLQIPR 132 (232)
Q Consensus 80 ~~~~~~~~~g~~~~l~C~~~~--~~~~~~~W~~~~--~~~------~-----------~~~~~~~------~~~~l~i~~ 132 (232)
.+....+.+|+++.|.|...+ .+.+.+.|++.. ..+ . ...++.. ....|.|.+
T Consensus 4 ~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~ 83 (116)
T cd04982 4 PQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQN 83 (116)
T ss_pred cCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEE
Confidence 345567778999999999876 566789999852 111 0 0122221 123699999
Q ss_pred CCCCCCeEEEEEeEe
Q psy15206 133 ITKEDRGAYYCVAQN 147 (232)
Q Consensus 133 ~~~~~~g~y~C~~~~ 147 (232)
++.+|+|.|.|.+..
T Consensus 84 ~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 84 LEKEDSATYYCAYWE 98 (116)
T ss_pred CCHHHCEEEEEEEec
Confidence 999999999999864
No 269
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.15 E-value=3.7e-05 Score=45.49 Aligned_cols=59 Identities=22% Similarity=0.387 Sum_probs=39.5
Q ss_pred EEEEeeecc-CCCCeEEEEeCCeeeCCCCc--------EEeeCCeEEECCCCCCCCeEEEEEeEeCCC
Q psy15206 92 VQLECHAEG-HPIPTISWRRENNAILPNGQ--------TIFTGSTLQIPRITKEDRGAYYCVAQNGIG 150 (232)
Q Consensus 92 ~~l~C~~~~-~~~~~~~W~~~~~~~~~~~~--------~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~ 150 (232)
+.|.|.+.+ .|.+.+.|+++++.+..... .....+.|.+.....++.+.|+|.+.+...
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l 69 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPAL 69 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhc
Confidence 679999977 57789999999987643211 111123455555555666799999998654
No 270
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.15 E-value=5.8e-05 Score=47.43 Aligned_cols=37 Identities=24% Similarity=0.553 Sum_probs=29.7
Q ss_pred CCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEE
Q psy15206 125 GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE 162 (232)
Q Consensus 125 ~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~ 162 (232)
+.+|.|.+++..|.|.|.|.+...... ....+.|.|.
T Consensus 78 ~asL~i~~v~~sD~G~Y~C~V~~g~~~-~~~~v~L~V~ 114 (117)
T cd05901 78 DASLTIVKLRASDAGVYRCEVMHGIED-TQDTVSLDVS 114 (117)
T ss_pred ceEEEEcccccccCEEEEEEEEECCcc-cEEEEEEEEE
Confidence 358999999999999999999987654 5566666664
No 271
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.14 E-value=1.2e-05 Score=47.60 Aligned_cols=50 Identities=16% Similarity=0.353 Sum_probs=32.4
Q ss_pred EEEEEEeecC-CCCeEEEeeCCEEecCC---------CeEEEE----EeccccCCceEEEEecC
Q psy15206 182 MDLDCHIEAY-PHPILYWAKDGEIVVND---------EYHSIS----NFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 182 ~~l~C~~~~~-p~~~~~W~~~g~~~~~~---------~~~~~~----~~~~~~~d~g~Y~C~~~ 231 (232)
+.|.|.+.+. |.+.+.|+++|..+... ..|... .......+.+.|+|+|.
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~ 65 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVD 65 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEe
Confidence 6899999665 88899999999876422 122221 11122245569999874
No 272
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.14 E-value=2.1e-05 Score=48.31 Aligned_cols=63 Identities=17% Similarity=0.348 Sum_probs=43.3
Q ss_pred EeecCCcEEEEeeeccC--CCCeEEEEeCCee--eC------------CCCcEEe----eCCeEEECCCCCCCCeEEEEE
Q psy15206 85 VAKEGQSVQLECHAEGH--PIPTISWRRENNA--IL------------PNGQTIF----TGSTLQIPRITKEDRGAYYCV 144 (232)
Q Consensus 85 ~~~~g~~~~l~C~~~~~--~~~~~~W~~~~~~--~~------------~~~~~~~----~~~~l~i~~~~~~~~g~y~C~ 144 (232)
.+.+|+++.|.|...+. ....+.||+.... +. ...++.. ....|.|.+++.+|+|.|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 81 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ 81 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence 35689999999998654 4456999985421 10 0112221 123699999999999999999
Q ss_pred eEe
Q psy15206 145 AQN 147 (232)
Q Consensus 145 ~~~ 147 (232)
+.+
T Consensus 82 ~~~ 84 (98)
T cd04984 82 VWD 84 (98)
T ss_pred Ecc
Confidence 864
No 273
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.14 E-value=5e-05 Score=47.85 Aligned_cols=62 Identities=13% Similarity=0.379 Sum_probs=45.8
Q ss_pred ccceeeeeccCeEEEEEEee-cCCCCeEEEeeCCE-----Eec-------------------------CCCeEEEEEecc
Q psy15206 170 QSTRIGQALHHDMDLDCHIE-AYPHPILYWAKDGE-----IVV-------------------------NDEYHSISNFGT 218 (232)
Q Consensus 170 ~~~~~~~~~g~~~~l~C~~~-~~p~~~~~W~~~g~-----~~~-------------------------~~~~~~~~~~~~ 218 (232)
.+..+.+..|+++.|.|... ......+.|++... .+. ....+.|.+.++
T Consensus 7 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l 86 (114)
T PF07686_consen 7 PPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNL 86 (114)
T ss_dssp EESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSE
T ss_pred eCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCC
Confidence 45667788999999999998 44455799998321 110 123567888899
Q ss_pred ccCCceEEEEecC
Q psy15206 219 SEGTTGSLQCKVP 231 (232)
Q Consensus 219 ~~~d~g~Y~C~~~ 231 (232)
+.+|+|.|.|.+.
T Consensus 87 ~~~DsG~Y~C~v~ 99 (114)
T PF07686_consen 87 QPSDSGTYFCQVS 99 (114)
T ss_dssp SGGGEEEEEEEEE
T ss_pred CcCcCEEEEEEEE
Confidence 9999999999874
No 274
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=98.13 E-value=2.7e-05 Score=47.03 Aligned_cols=55 Identities=15% Similarity=0.227 Sum_probs=37.1
Q ss_pred eccCeEEEEEEeecCCCC--eEEEeeCCEEec----------CCCeEEE-EEeccccCCceEEEEecC
Q psy15206 177 ALHHDMDLDCHIEAYPHP--ILYWAKDGEIVV----------NDEYHSI-SNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 177 ~~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~----------~~~~~~~-~~~~~~~~d~g~Y~C~~~ 231 (232)
..|+..+|.|.+.|+.++ .+.|+|||..+. .+..|.+ ........+...|.|+|.
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~ 80 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIPKVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVR 80 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEECCCcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEE
Confidence 346677999999997655 589999998754 2233433 222344466778999874
No 275
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.13 E-value=9.5e-05 Score=44.96 Aligned_cols=71 Identities=23% Similarity=0.479 Sum_probs=44.3
Q ss_pred CcEEEEeeeccCCC-CeEEEEeCCe----eeC--C-----------CCcEEe-----eCCeEEECCCCCCCCeEEEEEeE
Q psy15206 90 QSVQLECHAEGHPI-PTISWRRENN----AIL--P-----------NGQTIF-----TGSTLQIPRITKEDRGAYYCVAQ 146 (232)
Q Consensus 90 ~~~~l~C~~~~~~~-~~~~W~~~~~----~~~--~-----------~~~~~~-----~~~~l~i~~~~~~~~g~y~C~~~ 146 (232)
+++.|.|....... ..+.|.+... .+. . ..+... .+.+|.|.+++.+|.|.|.|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~ 80 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV 80 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence 36788998764332 3588977421 110 0 011111 24689999999999999999987
Q ss_pred e-CCCCceeeEEEEEE
Q psy15206 147 N-GIGRGARRKIEVKV 161 (232)
Q Consensus 147 ~-~~~~~~~~~~~l~v 161 (232)
. ..|. ......|.|
T Consensus 81 tfP~G~-~~~~~~l~~ 95 (96)
T cd05887 81 TFPLGN-TQSSTTVTV 95 (96)
T ss_pred eCCCCC-eeEEEEEEE
Confidence 6 4555 445555544
No 276
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.12 E-value=3.8e-05 Score=48.04 Aligned_cols=36 Identities=25% Similarity=0.533 Sum_probs=28.8
Q ss_pred CeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEE
Q psy15206 126 STLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE 162 (232)
Q Consensus 126 ~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~ 162 (232)
.+|.|.+++.+|.|.|.|.+...... ....+.|.|.
T Consensus 72 asL~i~nv~~~D~G~Y~C~v~~g~~~-~~~~v~L~V~ 107 (110)
T cd05902 72 ASLVLSRLRYSDSGTYRCEVVLGIND-EQDTVPLEVT 107 (110)
T ss_pred EEEEECCCCHHHCEEEEEEEEECCcc-cEEEEEEEEE
Confidence 48999999999999999999985433 5566677664
No 277
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.12 E-value=4e-05 Score=46.97 Aligned_cols=72 Identities=21% Similarity=0.372 Sum_probs=46.0
Q ss_pred CCcEEEEeeeccCCC-CeEEEEeCCee----e---CC----------CCcEEe-----eCCeEEECCCCCCCCeEEEEEe
Q psy15206 89 GQSVQLECHAEGHPI-PTISWRRENNA----I---LP----------NGQTIF-----TGSTLQIPRITKEDRGAYYCVA 145 (232)
Q Consensus 89 g~~~~l~C~~~~~~~-~~~~W~~~~~~----~---~~----------~~~~~~-----~~~~l~i~~~~~~~~g~y~C~~ 145 (232)
|++++|.|....... ..+.|++.... + .. ..+... ...+|.|.+++.+|.|.|.|.+
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 678999998654332 25999885321 0 00 001111 2357999999999999999998
Q ss_pred EeC-CCCceeeEEEEEE
Q psy15206 146 QNG-IGRGARRKIEVKV 161 (232)
Q Consensus 146 ~~~-~~~~~~~~~~l~v 161 (232)
... .|. ....+.|.|
T Consensus 81 ~~~p~g~-~~~~~~L~v 96 (97)
T cd05846 81 NTFPDGS-KSGTMCLTV 96 (97)
T ss_pred EeCCCCC-eeeEEEEEE
Confidence 864 444 555666655
No 278
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.12 E-value=2.9e-05 Score=47.43 Aligned_cols=68 Identities=16% Similarity=0.281 Sum_probs=44.7
Q ss_pred eEeecCCcEEEEeeecc-CCCCe--EEEEeCCeeeCCCCcE------EeeCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206 84 SVAKEGQSVQLECHAEG-HPIPT--ISWRRENNAILPNGQT------IFTGSTLQIPRITKEDRGAYYCVAQNGIGR 151 (232)
Q Consensus 84 ~~~~~g~~~~l~C~~~~-~~~~~--~~W~~~~~~~~~~~~~------~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~ 151 (232)
..+.+|+.+.|.|.+.| .|... +.||+++..+...... .....++.+..-..+|...|+|.+......
T Consensus 11 ~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 11 SWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELDLRP 87 (100)
T ss_pred CcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEeccCc
Confidence 34568999999999987 56665 7999998877432111 112235665544444444999999976543
No 279
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.10 E-value=7.9e-06 Score=50.63 Aligned_cols=62 Identities=13% Similarity=0.007 Sum_probs=41.5
Q ss_pred ccceeeeeccCeEEEEEEeecCCCCeEEEeeCCE-----Eec--------------CCCe------EEEEEeccccCCce
Q psy15206 170 QSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGE-----IVV--------------NDEY------HSISNFGTSEGTTG 224 (232)
Q Consensus 170 ~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~-----~~~--------------~~~~------~~~~~~~~~~~d~g 224 (232)
.+.+..+..|+++.|.|.........+.|+|+.. .+. ..++ -.|.+.+++.+|+|
T Consensus 4 e~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G 83 (105)
T cd05774 4 ELVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTG 83 (105)
T ss_pred eccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCE
Confidence 3444567789999999975433334799999621 110 0112 25677788999999
Q ss_pred EEEEecC
Q psy15206 225 SLQCKVP 231 (232)
Q Consensus 225 ~Y~C~~~ 231 (232)
.|+|.+.
T Consensus 84 ~Y~~~v~ 90 (105)
T cd05774 84 FYTLQTI 90 (105)
T ss_pred EEEEEEE
Confidence 9999874
No 280
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.10 E-value=1.2e-05 Score=49.09 Aligned_cols=63 Identities=25% Similarity=0.399 Sum_probs=44.8
Q ss_pred cCCcEEEEeeeccC-CC-CeEEEEeCCeeeCCCCc-E---------EeeCCeEEECCCCCCCCeEEEEEeEeCCC
Q psy15206 88 EGQSVQLECHAEGH-PI-PTISWRRENNAILPNGQ-T---------IFTGSTLQIPRITKEDRGAYYCVAQNGIG 150 (232)
Q Consensus 88 ~g~~~~l~C~~~~~-~~-~~~~W~~~~~~~~~~~~-~---------~~~~~~l~i~~~~~~~~g~y~C~~~~~~~ 150 (232)
.|+.+.|.|.+.|. |. ..+.|+++|..+..... . ....+.|.+......+.+.|+|.+.+...
T Consensus 12 ~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 12 LGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL 86 (95)
T ss_pred cCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 57899999999996 53 57999999987643321 0 11123466666666789999999998643
No 281
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.09 E-value=1.9e-05 Score=49.52 Aligned_cols=54 Identities=13% Similarity=0.265 Sum_probs=37.3
Q ss_pred ccCeEEEEEEeecCC------------CCeEEEeeC--CE---Ee-------------------c----CCCeEEEEEec
Q psy15206 178 LHHDMDLDCHIEAYP------------HPILYWAKD--GE---IV-------------------V----NDEYHSISNFG 217 (232)
Q Consensus 178 ~g~~~~l~C~~~~~p------------~~~~~W~~~--g~---~~-------------------~----~~~~~~~~~~~ 217 (232)
.|++++|.|...... .+.|.|+|. |. .+ . ....+.|.+.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 378899999875432 347999874 10 00 0 11456777888
Q ss_pred cccCCceEEEEecC
Q psy15206 218 TSEGTTGSLQCKVP 231 (232)
Q Consensus 218 ~~~~d~g~Y~C~~~ 231 (232)
.+.+|+|.|+|.+.
T Consensus 81 l~~sDsG~Y~C~V~ 94 (112)
T cd05900 81 LRSNDSGTYRCEVM 94 (112)
T ss_pred cccccCEEEEEEEe
Confidence 88999999999974
No 282
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=98.09 E-value=1e-05 Score=44.54 Aligned_cols=49 Identities=12% Similarity=0.299 Sum_probs=35.0
Q ss_pred eccCeEEEEEEeecCCCCeEEEeeCCEEecCCCeEEEEEeccccCCceEEEEec
Q psy15206 177 ALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQCKV 230 (232)
Q Consensus 177 ~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~d~g~Y~C~~ 230 (232)
..|.+|+|+|...+. .+.|.+|+..+..+....+..+- . ++.|.|.|.+
T Consensus 5 isGTtVtlTCP~~~~---~i~W~~n~~~~~g~~~~~~~~~~-~-e~~G~Y~C~~ 53 (65)
T cd07692 5 ISGTTVTVTCPLSGD---DIKWKKNDQVSQGSDEKYLSLNH-F-SSSGYYHCTA 53 (65)
T ss_pred EeccEEEEECCCCCC---CceEEeCCccCCCCCceEEeecc-C-CCCceEEEEe
Confidence 478999999986533 39999999766654444433332 3 8899999976
No 283
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.09 E-value=3e-05 Score=49.28 Aligned_cols=62 Identities=11% Similarity=0.280 Sum_probs=43.7
Q ss_pred ccceeeeeccCeEEEEEEeecC-CCCeEEEeeC--CEE---e-----------------c---CCCeEEEEEeccccCCc
Q psy15206 170 QSTRIGQALHHDMDLDCHIEAY-PHPILYWAKD--GEI---V-----------------V---NDEYHSISNFGTSEGTT 223 (232)
Q Consensus 170 ~~~~~~~~~g~~~~l~C~~~~~-p~~~~~W~~~--g~~---~-----------------~---~~~~~~~~~~~~~~~d~ 223 (232)
.+..+.+..|++++|.|..... ....+.|+|. +.. + . ....+.|.+.++..+|+
T Consensus 5 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Ds 84 (116)
T cd07706 5 AQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDS 84 (116)
T ss_pred eCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHC
Confidence 3455677899999999997654 3456999973 111 1 0 12346677778888999
Q ss_pred eEEEEecC
Q psy15206 224 GSLQCKVP 231 (232)
Q Consensus 224 g~Y~C~~~ 231 (232)
|.|.|.+.
T Consensus 85 g~Y~C~~~ 92 (116)
T cd07706 85 AKYFCALS 92 (116)
T ss_pred EEEEEEEE
Confidence 99999874
No 284
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.08 E-value=3.5e-05 Score=48.61 Aligned_cols=68 Identities=25% Similarity=0.530 Sum_probs=47.1
Q ss_pred CCceEeecCCcEEEEeeec-cCCCCeEEEEeCCe-----eeC---C-----------CCcEE-e-e----CCeEEECCCC
Q psy15206 81 PQLSVAKEGQSVQLECHAE-GHPIPTISWRRENN-----AIL---P-----------NGQTI-F-T----GSTLQIPRIT 134 (232)
Q Consensus 81 ~~~~~~~~g~~~~l~C~~~-~~~~~~~~W~~~~~-----~~~---~-----------~~~~~-~-~----~~~l~i~~~~ 134 (232)
+....+.+|+++.|.|... ......+.|++... .+. . ..+.. . . ..+|.|.+++
T Consensus 8 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~ 87 (114)
T PF07686_consen 8 PSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQ 87 (114)
T ss_dssp ESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSES
T ss_pred CCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCC
Confidence 4456777999999999987 44555799998432 111 0 00111 1 1 1269999999
Q ss_pred CCCCeEEEEEeEeC
Q psy15206 135 KEDRGAYYCVAQNG 148 (232)
Q Consensus 135 ~~~~g~y~C~~~~~ 148 (232)
.+|+|.|.|.+...
T Consensus 88 ~~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 88 PSDSGTYFCQVSTS 101 (114)
T ss_dssp GGGEEEEEEEEEES
T ss_pred cCcCEEEEEEEEEC
Confidence 99999999999876
No 285
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.08 E-value=1.2e-05 Score=49.39 Aligned_cols=57 Identities=11% Similarity=0.218 Sum_probs=40.7
Q ss_pred eeeccCeEEEEEEeecC--CCCeEEEeeCCE--E---ec------------------CCCeEEEEEeccccCCceEEEEe
Q psy15206 175 GQALHHDMDLDCHIEAY--PHPILYWAKDGE--I---VV------------------NDEYHSISNFGTSEGTTGSLQCK 229 (232)
Q Consensus 175 ~~~~g~~~~l~C~~~~~--p~~~~~W~~~g~--~---~~------------------~~~~~~~~~~~~~~~d~g~Y~C~ 229 (232)
.+..|++++|.|...+. ....+.|+|... . +. ....+.|.+.++..+|+|.|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 81 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ 81 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence 35689999999998664 445699987421 1 10 11345678888889999999998
Q ss_pred cC
Q psy15206 230 VP 231 (232)
Q Consensus 230 ~~ 231 (232)
+.
T Consensus 82 ~~ 83 (98)
T cd04984 82 VW 83 (98)
T ss_pred Ec
Confidence 64
No 286
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.06 E-value=1.8e-05 Score=53.21 Aligned_cols=59 Identities=15% Similarity=0.349 Sum_probs=43.0
Q ss_pred eeeeeccCeEEEEEEee-cCCCCeEEEeeCCEEec----------C------------CCeEEEEEeccccCCceEEEEe
Q psy15206 173 RIGQALHHDMDLDCHIE-AYPHPILYWAKDGEIVV----------N------------DEYHSISNFGTSEGTTGSLQCK 229 (232)
Q Consensus 173 ~~~~~~g~~~~l~C~~~-~~p~~~~~W~~~g~~~~----------~------------~~~~~~~~~~~~~~d~g~Y~C~ 229 (232)
...+.+|++++|.|... +...+.+.|+|.+..+. . .....|.+.+++.+|+|.|.|.
T Consensus 24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~ 103 (189)
T PHA02987 24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI 103 (189)
T ss_pred EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence 34678899999999974 65677899999743221 0 1223567788999999999998
Q ss_pred cC
Q psy15206 230 VP 231 (232)
Q Consensus 230 ~~ 231 (232)
+.
T Consensus 104 F~ 105 (189)
T PHA02987 104 FN 105 (189)
T ss_pred EE
Confidence 64
No 287
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=98.04 E-value=9.3e-05 Score=46.40 Aligned_cols=64 Identities=30% Similarity=0.465 Sum_probs=39.6
Q ss_pred EeecCCcEEEEeeecc-CCC-CeEEEEeCCeeeCCCCcE---------EeeCCeEEECCCCCCCCe-EEEEEeEeCC
Q psy15206 85 VAKEGQSVQLECHAEG-HPI-PTISWRRENNAILPNGQT---------IFTGSTLQIPRITKEDRG-AYYCVAQNGI 149 (232)
Q Consensus 85 ~~~~g~~~~l~C~~~~-~~~-~~~~W~~~~~~~~~~~~~---------~~~~~~l~i~~~~~~~~g-~y~C~~~~~~ 149 (232)
....|+.+.|.|.+.| +|. ..++|+++|..+...... ....+.|.+.. ...|.+ .|.|.+.+..
T Consensus 17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~ 92 (111)
T cd05772 17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRT 92 (111)
T ss_pred ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCC
Confidence 3446788999999998 443 479999999886422111 11122344443 333333 5999999864
No 288
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.04 E-value=3.4e-05 Score=45.70 Aligned_cols=50 Identities=16% Similarity=0.329 Sum_probs=32.0
Q ss_pred EEEEEEeec-CCCCeEEEeeCCEEecCC----------CeEE----EEEeccccCCceEEEEecC
Q psy15206 182 MDLDCHIEA-YPHPILYWAKDGEIVVND----------EYHS----ISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 182 ~~l~C~~~~-~p~~~~~W~~~g~~~~~~----------~~~~----~~~~~~~~~d~g~Y~C~~~ 231 (232)
++|.|.+.| +|...+.|+|||..+... ..|. +........+...|+|+|.
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~ 66 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVD 66 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEe
Confidence 589999977 566689999999876421 1222 1112222345668999984
No 289
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.04 E-value=1.1e-05 Score=49.45 Aligned_cols=54 Identities=13% Similarity=0.195 Sum_probs=38.1
Q ss_pred ccCeEEEEEEeec-CCCCeEEEeeCCEEec------------------------CCCeEEEEEeccccCCceEEEEecC
Q psy15206 178 LHHDMDLDCHIEA-YPHPILYWAKDGEIVV------------------------NDEYHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 178 ~g~~~~l~C~~~~-~p~~~~~W~~~g~~~~------------------------~~~~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
.|++|+|.|.... .....+.|++++..+. ....+.|.+.+++.+|+|.|.|.+.
T Consensus 3 ~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 3 LGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred cCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence 6889999998754 3344689987542110 1224678888889999999999874
No 290
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.02 E-value=9.9e-05 Score=43.70 Aligned_cols=58 Identities=24% Similarity=0.391 Sum_probs=39.6
Q ss_pred EEEEeeecc-CCCCeEEEEeCCeeeCCCCcE---------EeeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206 92 VQLECHAEG-HPIPTISWRRENNAILPNGQT---------IFTGSTLQIPRITKEDRGAYYCVAQNGI 149 (232)
Q Consensus 92 ~~l~C~~~~-~~~~~~~W~~~~~~~~~~~~~---------~~~~~~l~i~~~~~~~~g~y~C~~~~~~ 149 (232)
+.|.|.+.| +|...+.|+++|..+...... ....+.|.+..-..++...|+|.+.+..
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~ 69 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHES 69 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechh
Confidence 679999988 666789999999886432211 1122356665555666679999999864
No 291
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=98.02 E-value=2.8e-05 Score=48.74 Aligned_cols=32 Identities=13% Similarity=0.421 Sum_probs=25.4
Q ss_pred eeeccCeEEEEEEeecCCCC--eEEEeeCCEEec
Q psy15206 175 GQALHHDMDLDCHIEAYPHP--ILYWAKDGEIVV 206 (232)
Q Consensus 175 ~~~~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~ 206 (232)
....|+.++|.|.+.|+.++ .+.|+|||..+.
T Consensus 17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~ 50 (111)
T cd05772 17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELS 50 (111)
T ss_pred ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECc
Confidence 34568889999999886553 799999998764
No 292
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.02 E-value=3.5e-05 Score=45.68 Aligned_cols=50 Identities=20% Similarity=0.371 Sum_probs=33.1
Q ss_pred EEEEEEeecC-CCCeEEEeeCCEEecCC----------CeEEEEE----eccccCCceEEEEecC
Q psy15206 182 MDLDCHIEAY-PHPILYWAKDGEIVVND----------EYHSISN----FGTSEGTTGSLQCKVP 231 (232)
Q Consensus 182 ~~l~C~~~~~-p~~~~~W~~~g~~~~~~----------~~~~~~~----~~~~~~d~g~Y~C~~~ 231 (232)
+.|+|.+.|+ |.+.|.|+++|..+... ..|.... ......+...|+|.|.
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~ 66 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVG 66 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEE
Confidence 6899999775 88899999999875431 1332211 1222356679999974
No 293
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.01 E-value=5.6e-05 Score=47.88 Aligned_cols=61 Identities=20% Similarity=0.340 Sum_probs=42.1
Q ss_pred cceeeeeccCeEEEEEEeecCC----CCeEEEeeC----CEE--ec------------------------CCCeEEEEEe
Q psy15206 171 STRIGQALHHDMDLDCHIEAYP----HPILYWAKD----GEI--VV------------------------NDEYHSISNF 216 (232)
Q Consensus 171 ~~~~~~~~g~~~~l~C~~~~~p----~~~~~W~~~----g~~--~~------------------------~~~~~~~~~~ 216 (232)
+..+.+..|+++.|.|.....+ ...+.|++. +.. +. ......|.+.
T Consensus 5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~ 84 (115)
T cd05880 5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW 84 (115)
T ss_pred CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence 4556788999999999975443 235999741 111 10 0123468888
Q ss_pred ccccCCceEEEEecC
Q psy15206 217 GTSEGTTGSLQCKVP 231 (232)
Q Consensus 217 ~~~~~d~g~Y~C~~~ 231 (232)
+++.+|+|.|.|.+.
T Consensus 85 ~v~~~D~G~Y~C~v~ 99 (115)
T cd05880 85 QLQPTDNGTYTCQVK 99 (115)
T ss_pred eCChhhCEEEEEEEE
Confidence 899999999999875
No 294
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.00 E-value=3e-05 Score=48.38 Aligned_cols=54 Identities=24% Similarity=0.385 Sum_probs=38.3
Q ss_pred ccCeEEEEEEeecCC------CCeEEEeeCC-----E-Eec----------------------CCCeEEEEEeccccCCc
Q psy15206 178 LHHDMDLDCHIEAYP------HPILYWAKDG-----E-IVV----------------------NDEYHSISNFGTSEGTT 223 (232)
Q Consensus 178 ~g~~~~l~C~~~~~p------~~~~~W~~~g-----~-~~~----------------------~~~~~~~~~~~~~~~d~ 223 (232)
.|++++|.|.....+ ...+.|+|.. . .+. ......|.+.+++..|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 378899999976543 4479999861 1 110 12346777888888999
Q ss_pred eEEEEecC
Q psy15206 224 GSLQCKVP 231 (232)
Q Consensus 224 g~Y~C~~~ 231 (232)
|.|.|.+.
T Consensus 81 G~Y~C~v~ 88 (106)
T cd05714 81 GRYRCEVI 88 (106)
T ss_pred EEEEEEEE
Confidence 99999874
No 295
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.98 E-value=2.9e-05 Score=48.57 Aligned_cols=56 Identities=11% Similarity=0.270 Sum_probs=38.9
Q ss_pred eeeccCeEEEEEEeecCC-CCeEEEeeCCEE--------e---c----------------------CCCeEEEEEecccc
Q psy15206 175 GQALHHDMDLDCHIEAYP-HPILYWAKDGEI--------V---V----------------------NDEYHSISNFGTSE 220 (232)
Q Consensus 175 ~~~~g~~~~l~C~~~~~p-~~~~~W~~~g~~--------~---~----------------------~~~~~~~~~~~~~~ 220 (232)
.+..|++++|.|...+.. ...+.|+|.... + . ....+.|.+.++..
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 356899999999986643 346999974210 0 0 11234577778888
Q ss_pred CCceEEEEec
Q psy15206 221 GTTGSLQCKV 230 (232)
Q Consensus 221 ~d~g~Y~C~~ 230 (232)
+|+|.|.|..
T Consensus 82 ~Dsg~YyCa~ 91 (107)
T cd07700 82 EDSGTYFCMT 91 (107)
T ss_pred HHCEEEEEeE
Confidence 9999999985
No 296
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=97.97 E-value=3.4e-05 Score=48.47 Aligned_cols=54 Identities=22% Similarity=0.339 Sum_probs=37.6
Q ss_pred ccCeEEEEEEeecCC----------CCeEEEeeCC--EE---e---------c--------------CCCeEEEEEeccc
Q psy15206 178 LHHDMDLDCHIEAYP----------HPILYWAKDG--EI---V---------V--------------NDEYHSISNFGTS 219 (232)
Q Consensus 178 ~g~~~~l~C~~~~~p----------~~~~~W~~~g--~~---~---------~--------------~~~~~~~~~~~~~ 219 (232)
.|++++|.|.....+ ...+.|+|.. .. + . ......|.+.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 378899999876543 2459998841 11 0 0 1234668888899
Q ss_pred cCCceEEEEecC
Q psy15206 220 EGTTGSLQCKVP 231 (232)
Q Consensus 220 ~~d~g~Y~C~~~ 231 (232)
..|+|.|.|.+.
T Consensus 81 ~sD~G~Y~C~v~ 92 (110)
T cd05878 81 SSDSGVYRCEVM 92 (110)
T ss_pred hhhCEEEEEEEE
Confidence 999999999974
No 297
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.97 E-value=2.4e-05 Score=48.15 Aligned_cols=67 Identities=22% Similarity=0.351 Sum_probs=40.2
Q ss_pred cEEEecccee-eeeccCeEEEEEEeecCCCC--eEEEeeCCEEecC-----------CCeEEEEEe----ccccCCceEE
Q psy15206 165 PIVTVQSTRI-GQALHHDMDLDCHIEAYPHP--ILYWAKDGEIVVN-----------DEYHSISNF----GTSEGTTGSL 226 (232)
Q Consensus 165 p~~~~~~~~~-~~~~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~~-----------~~~~~~~~~----~~~~~d~g~Y 226 (232)
|.+.+.+... ....++.++|.|.+.|+.+. .+.|++||..+.. ++.|.+... .....+...|
T Consensus 2 P~V~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~ 81 (100)
T cd07699 2 PSVTIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVY 81 (100)
T ss_pred CeEEEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeE
Confidence 4444433322 33457789999999986543 5899999987641 233433222 1121345789
Q ss_pred EEecC
Q psy15206 227 QCKVP 231 (232)
Q Consensus 227 ~C~~~ 231 (232)
+|+|.
T Consensus 82 sC~V~ 86 (100)
T cd07699 82 TCEVT 86 (100)
T ss_pred EEEEE
Confidence 99873
No 298
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=97.97 E-value=2.7e-05 Score=47.87 Aligned_cols=57 Identities=18% Similarity=0.297 Sum_probs=41.2
Q ss_pred eeeccCeEEEEEEeec-CCCCeEEEeeCCE-----Ee----------------c---CCCeEEEEEeccccCCceEEEEe
Q psy15206 175 GQALHHDMDLDCHIEA-YPHPILYWAKDGE-----IV----------------V---NDEYHSISNFGTSEGTTGSLQCK 229 (232)
Q Consensus 175 ~~~~g~~~~l~C~~~~-~p~~~~~W~~~g~-----~~----------------~---~~~~~~~~~~~~~~~d~g~Y~C~ 229 (232)
.+..|++++|.|.... .....+.|+|... .+ . ....+.|.+.++..+|+|.|.|.
T Consensus 3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~ 82 (98)
T cd05716 3 TGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCG 82 (98)
T ss_pred EEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEE
Confidence 4678999999998754 3345689998531 11 0 12346788888899999999998
Q ss_pred cC
Q psy15206 230 VP 231 (232)
Q Consensus 230 ~~ 231 (232)
+.
T Consensus 83 ~~ 84 (98)
T cd05716 83 VG 84 (98)
T ss_pred cc
Confidence 74
No 299
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=97.96 E-value=9.8e-05 Score=45.52 Aligned_cols=36 Identities=19% Similarity=0.378 Sum_probs=28.1
Q ss_pred CCeEEECCCCCCCCeEEEEEeEe-CCCCceeeEEEEEE
Q psy15206 125 GSTLQIPRITKEDRGAYYCVAQN-GIGRGARRKIEVKV 161 (232)
Q Consensus 125 ~~~l~i~~~~~~~~g~y~C~~~~-~~~~~~~~~~~l~v 161 (232)
+.+|.|.+++.+|.|.|.|.+.+ ..|. ....+.|.|
T Consensus 63 ~~sL~I~nv~~sD~GtY~C~v~~~p~g~-~~~~~~L~V 99 (100)
T cd05888 63 DGALILRNAVQADEGKYKCRVITFPAGN-FEAELVLTV 99 (100)
T ss_pred ceEEEEecCccccceEEEEEEEeCCCCC-eeeEEEEEe
Confidence 35899999999999999999987 4454 455566654
No 300
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=97.96 E-value=0.00037 Score=42.73 Aligned_cols=36 Identities=25% Similarity=0.551 Sum_probs=29.4
Q ss_pred CCeEEECCCCCCCCeEEEEEeEe-CCCCceeeEEEEEE
Q psy15206 125 GSTLQIPRITKEDRGAYYCVAQN-GIGRGARRKIEVKV 161 (232)
Q Consensus 125 ~~~l~i~~~~~~~~g~y~C~~~~-~~~~~~~~~~~l~v 161 (232)
+.+|.|.+++..|.|.|.|.+.+ ..|. ....+.|.|
T Consensus 62 daSi~i~nl~~~D~G~Y~C~v~t~P~g~-~~~~~~L~V 98 (99)
T cd05886 62 DGTISLSRLELEDEGVYICEFATFPTGN-RESQLNLTV 98 (99)
T ss_pred cceEEEcCCccccCEEEEEEEEeCCCCC-eEEEEEEEE
Confidence 36899999999999999999998 4554 566667665
No 301
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=97.96 E-value=3.1e-05 Score=47.57 Aligned_cols=52 Identities=17% Similarity=0.213 Sum_probs=35.8
Q ss_pred CeEEEEEEeecCC---CCeEEEeeCCE----Ee-----------cC------------CCeEEEEEeccccCCceEEEEe
Q psy15206 180 HDMDLDCHIEAYP---HPILYWAKDGE----IV-----------VN------------DEYHSISNFGTSEGTTGSLQCK 229 (232)
Q Consensus 180 ~~~~l~C~~~~~p---~~~~~W~~~g~----~~-----------~~------------~~~~~~~~~~~~~~d~g~Y~C~ 229 (232)
++++|.|.....+ ...+.|+|... .+ .. .....|.+.+++..|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 4688999876654 33589988532 00 00 0346788888999999999998
Q ss_pred cC
Q psy15206 230 VP 231 (232)
Q Consensus 230 ~~ 231 (232)
+.
T Consensus 81 v~ 82 (98)
T cd05718 81 FA 82 (98)
T ss_pred EE
Confidence 63
No 302
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.94 E-value=4.2e-05 Score=44.91 Aligned_cols=58 Identities=16% Similarity=0.271 Sum_probs=45.1
Q ss_pred eeeeccCeEEEEEEeecCCCC--eEEEeeCCEE-e--cCCCeEEEEEeccccCCceEEEEecC
Q psy15206 174 IGQALHHDMDLDCHIEAYPHP--ILYWAKDGEI-V--VNDEYHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 174 ~~~~~g~~~~l~C~~~~~p~~--~~~W~~~g~~-~--~~~~~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
..+-.|++++|+|.+...+.| .|.|+.-+.. . ...+...+....+...|+|..+|.++
T Consensus 9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~~~~~~ktL~~~qv~~qdSG~WtC~V~ 71 (88)
T cd07694 9 DHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQILNQDKKTLNLVQLGPNDSGTWDCIVS 71 (88)
T ss_pred CeeecCCcEEEEEecCCCCCCCccEEEeCCCCccceeccCCccEEEeceeCcccCCEEEEEEE
Confidence 356789999999999664444 8999965432 2 34467788888899999999999985
No 303
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.94 E-value=4e-05 Score=43.33 Aligned_cols=50 Identities=18% Similarity=0.447 Sum_probs=38.0
Q ss_pred EEEEEEeecCCCCeEEEeeCCEEec-------------CCCeEEEEEeccccCCceEEEEecC
Q psy15206 182 MDLDCHIEAYPHPILYWAKDGEIVV-------------NDEYHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 182 ~~l~C~~~~~p~~~~~W~~~g~~~~-------------~~~~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
+.|.|.+.+.+...+.|++++.... ......+.+.+....|.|.|.|.+.
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~ 63 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVAS 63 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEe
Confidence 4689999886777899999876543 2234567777777799999999874
No 304
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=97.94 E-value=6.3e-05 Score=47.80 Aligned_cols=61 Identities=16% Similarity=0.248 Sum_probs=42.1
Q ss_pred cceeeeeccCeEEEEEEeecCC----CCeEEEeeCCE------Ee---------c-C---------------CCeEEEEE
Q psy15206 171 STRIGQALHHDMDLDCHIEAYP----HPILYWAKDGE------IV---------V-N---------------DEYHSISN 215 (232)
Q Consensus 171 ~~~~~~~~g~~~~l~C~~~~~p----~~~~~W~~~g~------~~---------~-~---------------~~~~~~~~ 215 (232)
|..+.+..|++++|.|...... ...+.|++... .+ . . ...+.|.+
T Consensus 5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 84 (116)
T cd05715 5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI 84 (116)
T ss_pred CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence 5556788999999999875432 23599975210 11 0 0 11356788
Q ss_pred eccccCCceEEEEecC
Q psy15206 216 FGTSEGTTGSLQCKVP 231 (232)
Q Consensus 216 ~~~~~~d~g~Y~C~~~ 231 (232)
.+++.+|+|.|.|.+.
T Consensus 85 ~~v~~~D~G~Y~C~v~ 100 (116)
T cd05715 85 HNLQFTDNGTYTCDVK 100 (116)
T ss_pred eeCCcccCEEEEEEEE
Confidence 8899999999999874
No 305
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=97.92 E-value=0.00015 Score=44.48 Aligned_cols=64 Identities=23% Similarity=0.345 Sum_probs=44.3
Q ss_pred EeecCCcEEEEeeecc-CCCCeEEEEeCCeee-------------CCCCcEEee------CCeEEECCCCCCCCeEEEEE
Q psy15206 85 VAKEGQSVQLECHAEG-HPIPTISWRRENNAI-------------LPNGQTIFT------GSTLQIPRITKEDRGAYYCV 144 (232)
Q Consensus 85 ~~~~g~~~~l~C~~~~-~~~~~~~W~~~~~~~-------------~~~~~~~~~------~~~l~i~~~~~~~~g~y~C~ 144 (232)
.+.+|++++|.|.... .....+.|++..... ....+.... ...|.|.+++.+|+|.|.|.
T Consensus 3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~ 82 (98)
T cd05716 3 TGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCG 82 (98)
T ss_pred EEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEE
Confidence 5668999999998765 345568999864211 011122221 13799999999999999999
Q ss_pred eEeC
Q psy15206 145 AQNG 148 (232)
Q Consensus 145 ~~~~ 148 (232)
+...
T Consensus 83 ~~~~ 86 (98)
T cd05716 83 VGDD 86 (98)
T ss_pred cccC
Confidence 8764
No 306
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=97.90 E-value=5e-05 Score=46.84 Aligned_cols=22 Identities=9% Similarity=0.153 Sum_probs=18.9
Q ss_pred eEEEEEeccccCCceEEEEecC
Q psy15206 210 YHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 210 ~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
.+.|.+.++...|+|.|+|.+.
T Consensus 64 ~~sL~I~~v~~~D~G~Y~C~v~ 85 (100)
T cd05713 64 SVALRIHNVRASDEGLYTCFFQ 85 (100)
T ss_pred cEEEEEEcCChhhCEEEEEEEe
Confidence 3678888899999999999975
No 307
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.87 E-value=6.8e-05 Score=45.59 Aligned_cols=57 Identities=9% Similarity=0.188 Sum_probs=35.9
Q ss_pred eeeccCeEEEEEEeecCCCC--eEEEeeCCEEec----------CCCeEEEEE-eccccC-CceEEEEecC
Q psy15206 175 GQALHHDMDLDCHIEAYPHP--ILYWAKDGEIVV----------NDEYHSISN-FGTSEG-TTGSLQCKVP 231 (232)
Q Consensus 175 ~~~~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~----------~~~~~~~~~-~~~~~~-d~g~Y~C~~~ 231 (232)
....++.++|.|.+.|+.+. .+.|.+||..+. +++.|.+.. ...+.. ....|+|.|.
T Consensus 12 e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~~~~~ysC~V~ 82 (96)
T cd07697 12 EIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDSLGKKFRCIYK 82 (96)
T ss_pred HHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchhCCCeEEEEEE
Confidence 34456778999999996555 589999998753 223444322 222333 2345999874
No 308
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=97.86 E-value=9e-05 Score=46.23 Aligned_cols=54 Identities=20% Similarity=0.243 Sum_probs=37.2
Q ss_pred ccCeEEEEEEeecCC------CCeEEEeeCCE----E----ec--------------------CCCeEEEEEeccccCCc
Q psy15206 178 LHHDMDLDCHIEAYP------HPILYWAKDGE----I----VV--------------------NDEYHSISNFGTSEGTT 223 (232)
Q Consensus 178 ~g~~~~l~C~~~~~p------~~~~~W~~~g~----~----~~--------------------~~~~~~~~~~~~~~~d~ 223 (232)
.|++++|.|.....| ...+.|+|... . +. ......|.+.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 478899999876653 34699998531 0 00 01234677788888999
Q ss_pred eEEEEecC
Q psy15206 224 GSLQCKVP 231 (232)
Q Consensus 224 g~Y~C~~~ 231 (232)
|.|.|.+.
T Consensus 81 G~Y~C~v~ 88 (106)
T cd05877 81 GRYRCEVI 88 (106)
T ss_pred EEEEEEEE
Confidence 99999874
No 309
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=97.83 E-value=4.8e-05 Score=46.62 Aligned_cols=53 Identities=15% Similarity=0.274 Sum_probs=35.9
Q ss_pred cCeEEEEEEeecCCCC-eEEEeeCCE----Eec-----------------------CCCeEEEEEeccccCCceEEEEec
Q psy15206 179 HHDMDLDCHIEAYPHP-ILYWAKDGE----IVV-----------------------NDEYHSISNFGTSEGTTGSLQCKV 230 (232)
Q Consensus 179 g~~~~l~C~~~~~p~~-~~~W~~~g~----~~~-----------------------~~~~~~~~~~~~~~~d~g~Y~C~~ 230 (232)
|++++|.|........ .+.|+|... .+. ......|.+.+++.+|+|.|.|.+
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 6789999985443332 589987421 110 113456888899999999999987
Q ss_pred C
Q psy15206 231 P 231 (232)
Q Consensus 231 ~ 231 (232)
.
T Consensus 81 ~ 81 (97)
T cd05846 81 N 81 (97)
T ss_pred E
Confidence 4
No 310
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.83 E-value=0.00013 Score=41.08 Aligned_cols=58 Identities=41% Similarity=0.669 Sum_probs=43.1
Q ss_pred EEEEeeeccCCCCeEEEEeCCeeeCCCC--------cEEeeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206 92 VQLECHAEGHPIPTISWRRENNAILPNG--------QTIFTGSTLQIPRITKEDRGAYYCVAQNGI 149 (232)
Q Consensus 92 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~--------~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~ 149 (232)
+.|.|.+.+.+...+.|++++....... ........|.+.++...|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 3688999886667899999876653322 112234578999999999999999998754
No 311
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.82 E-value=0.00012 Score=46.42 Aligned_cols=68 Identities=21% Similarity=0.384 Sum_probs=46.8
Q ss_pred CCCceEeecCCcEEEEeeeccC-CCCeEEEEeCCe--e---e---------CCCCcEEee------CCeEEECCCCCCCC
Q psy15206 80 SPQLSVAKEGQSVQLECHAEGH-PIPTISWRRENN--A---I---------LPNGQTIFT------GSTLQIPRITKEDR 138 (232)
Q Consensus 80 ~~~~~~~~~g~~~~l~C~~~~~-~~~~~~W~~~~~--~---~---------~~~~~~~~~------~~~l~i~~~~~~~~ 138 (232)
.+....+..|+++.|.|..... ....+.|++... . + ....++... ..+|.|.++..+|+
T Consensus 5 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Ds 84 (116)
T cd07706 5 AQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDS 84 (116)
T ss_pred eCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHC
Confidence 3455678899999999997653 345699998421 1 0 001222221 23699999999999
Q ss_pred eEEEEEeEe
Q psy15206 139 GAYYCVAQN 147 (232)
Q Consensus 139 g~y~C~~~~ 147 (232)
|.|.|.+..
T Consensus 85 g~Y~C~~~~ 93 (116)
T cd07706 85 AKYFCALST 93 (116)
T ss_pred EEEEEEEEC
Confidence 999999885
No 312
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.82 E-value=0.00012 Score=42.42 Aligned_cols=50 Identities=18% Similarity=0.376 Sum_probs=31.8
Q ss_pred EEEEEEeecCCC--CeEEEeeCCEEec-----------CCCeEEEEE----eccccCCceEEEEecC
Q psy15206 182 MDLDCHIEAYPH--PILYWAKDGEIVV-----------NDEYHSISN----FGTSEGTTGSLQCKVP 231 (232)
Q Consensus 182 ~~l~C~~~~~p~--~~~~W~~~g~~~~-----------~~~~~~~~~----~~~~~~d~g~Y~C~~~ 231 (232)
++|.|.+.|+.+ ..+.|+|||..+. .++.|.... ......+...|+|+|.
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~ 68 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVT 68 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEE
Confidence 689999998743 3799999998632 122333222 1223356679999874
No 313
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.82 E-value=0.00016 Score=45.21 Aligned_cols=63 Identities=30% Similarity=0.564 Sum_probs=42.5
Q ss_pred EeecCCcEEEEeeeccC-CCCeEEEEeCCeee-----------CC-----------CCcEEe--e----CCeEEECCCCC
Q psy15206 85 VAKEGQSVQLECHAEGH-PIPTISWRRENNAI-----------LP-----------NGQTIF--T----GSTLQIPRITK 135 (232)
Q Consensus 85 ~~~~g~~~~l~C~~~~~-~~~~~~W~~~~~~~-----------~~-----------~~~~~~--~----~~~l~i~~~~~ 135 (232)
.+.+|++++|.|...+. ....+.||+..... .. ..++.. . ...|.|.++..
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 45689999999998653 34579999854320 00 112211 1 12599999999
Q ss_pred CCCeEEEEEeEe
Q psy15206 136 EDRGAYYCVAQN 147 (232)
Q Consensus 136 ~~~g~y~C~~~~ 147 (232)
+|+|.|.|...+
T Consensus 82 ~Dsg~YyCa~~~ 93 (107)
T cd07700 82 EDSGTYFCMTVG 93 (107)
T ss_pred HHCEEEEEeEcC
Confidence 999999999753
No 314
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.81 E-value=0.00012 Score=42.88 Aligned_cols=50 Identities=20% Similarity=0.373 Sum_probs=32.4
Q ss_pred EEEEEEeec-CCCCeEEEeeCCEEecCCC---------e---EEEEEeccccCCceEEEEecC
Q psy15206 182 MDLDCHIEA-YPHPILYWAKDGEIVVNDE---------Y---HSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 182 ~~l~C~~~~-~p~~~~~W~~~g~~~~~~~---------~---~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
+.|.|.+.| .|.+.|+|+|+|..+.... + -.+.+.-..+.|...|+|+|.
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~ 64 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVD 64 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEc
Confidence 689999755 6777899999997765321 1 122223333355558999984
No 315
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.80 E-value=0.00011 Score=45.26 Aligned_cols=64 Identities=16% Similarity=0.300 Sum_probs=40.4
Q ss_pred eecCCcEEEEeeecc-CC-CCeEEEEeCCeeeCCCCc----E------EeeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206 86 AKEGQSVQLECHAEG-HP-IPTISWRRENNAILPNGQ----T------IFTGSTLQIPRITKEDRGAYYCVAQNGI 149 (232)
Q Consensus 86 ~~~g~~~~l~C~~~~-~~-~~~~~W~~~~~~~~~~~~----~------~~~~~~l~i~~~~~~~~g~y~C~~~~~~ 149 (232)
...++.+.|.|.+.| +| ...+.|+++|..+..... . ....+.|.+..-...+...|.|.+.+..
T Consensus 14 ~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~ 89 (100)
T cd07699 14 LEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEG 89 (100)
T ss_pred HccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecC
Confidence 335677999999998 44 346999999987632110 0 1112245454444445668999998854
No 316
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.79 E-value=0.00014 Score=43.18 Aligned_cols=54 Identities=20% Similarity=0.450 Sum_probs=36.0
Q ss_pred ccCeEEEEEEeecCCCC--eEEEeeCCEEecC-----------CCeEEEEE-eccccCCceEEEEecC
Q psy15206 178 LHHDMDLDCHIEAYPHP--ILYWAKDGEIVVN-----------DEYHSISN-FGTSEGTTGSLQCKVP 231 (232)
Q Consensus 178 ~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~~-----------~~~~~~~~-~~~~~~d~g~Y~C~~~ 231 (232)
.++.+.|.|.+.++.+. .+.|+++|..+.. ++.|.+.. ..+...+...|+|+|.
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ysC~V~ 74 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVTWNSGDEYSCRVT 74 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEETTTTGGEEEEEE
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEecCCCCCEEEEEEE
Confidence 48899999999886554 5999999887542 23333222 2233455568999874
No 317
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.77 E-value=0.00011 Score=44.52 Aligned_cols=54 Identities=20% Similarity=0.412 Sum_probs=34.6
Q ss_pred ccCeEEEEEEeecCCCC--eEEEeeCCEEec-----------CCCeEEEEEe-cccc---CCceEEEEecC
Q psy15206 178 LHHDMDLDCHIEAYPHP--ILYWAKDGEIVV-----------NDEYHSISNF-GTSE---GTTGSLQCKVP 231 (232)
Q Consensus 178 ~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~-----------~~~~~~~~~~-~~~~---~d~g~Y~C~~~ 231 (232)
.++.++|.|.+.|+.+. .+.|++||..+. .++.|.+... .+.. .+...|.|+|.
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~ 83 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVT 83 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEE
Confidence 45668999999996554 589999998752 1223433222 1222 35578999974
No 318
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.75 E-value=0.00013 Score=44.99 Aligned_cols=30 Identities=17% Similarity=0.591 Sum_probs=24.0
Q ss_pred eccCeEEEEEEeecCCCC--eEEEeeCCEEec
Q psy15206 177 ALHHDMDLDCHIEAYPHP--ILYWAKDGEIVV 206 (232)
Q Consensus 177 ~~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~ 206 (232)
..++.++|.|.+.|+.+. .+.|++||..+.
T Consensus 14 ~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~ 45 (102)
T cd05768 14 SLQETATLTCLVKGFSPSDIFVKWLQNGQPLS 45 (102)
T ss_pred CcCCceEEEEEEeeEeCCCCEEEEEECCEECC
Confidence 356789999999997665 479999987653
No 319
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.75 E-value=0.0014 Score=39.84 Aligned_cols=27 Identities=30% Similarity=0.439 Sum_probs=23.0
Q ss_pred CCeEEECCCCCCCCeEEEEEeEeC-CCC
Q psy15206 125 GSTLQIPRITKEDRGAYYCVAQNG-IGR 151 (232)
Q Consensus 125 ~~~l~i~~~~~~~~g~y~C~~~~~-~~~ 151 (232)
+.+|.|.+++.+|.|.|.|.+..- .|.
T Consensus 59 d~sI~i~nvt~~D~G~Y~C~~~t~P~g~ 86 (96)
T cd05889 59 DMSLSFNNATEEDVGLYCCSLVTYPQGS 86 (96)
T ss_pred ccEEEEcCCCcccCEEEEEEEEeCCCCC
Confidence 468999999999999999999863 454
No 320
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.73 E-value=0.00038 Score=41.82 Aligned_cols=53 Identities=26% Similarity=0.555 Sum_probs=35.1
Q ss_pred cCeEEEEEEe-ecCCCCeEEEeeCCEEec----------CCCeE----EEEEeccccCCceEEEEecC
Q psy15206 179 HHDMDLDCHI-EAYPHPILYWAKDGEIVV----------NDEYH----SISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 179 g~~~~l~C~~-~~~p~~~~~W~~~g~~~~----------~~~~~----~~~~~~~~~~d~g~Y~C~~~ 231 (232)
|+.+.+.|.+ .++|.+.+.|+.++..+. ....+ .|........+...++|.|.
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~ 81 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRAS 81 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEE
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEE
Confidence 7799999975 678989999999986651 22222 23333333356678999874
No 321
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.73 E-value=0.0004 Score=40.24 Aligned_cols=58 Identities=26% Similarity=0.421 Sum_probs=38.0
Q ss_pred EEEEeeeccC-CC-CeEEEEeCCeeeCCCC----------cEEeeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206 92 VQLECHAEGH-PI-PTISWRRENNAILPNG----------QTIFTGSTLQIPRITKEDRGAYYCVAQNGI 149 (232)
Q Consensus 92 ~~l~C~~~~~-~~-~~~~W~~~~~~~~~~~----------~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~ 149 (232)
+.|.|.+.|. |. ..+.|+++|..+.... ......+.|.+......+...|+|.+.+..
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 6799999984 44 4799999998632211 111112356665556667779999998753
No 322
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.72 E-value=0.00011 Score=45.65 Aligned_cols=56 Identities=14% Similarity=0.240 Sum_probs=38.8
Q ss_pred eeccCeEEEEEEeecCCCCeEEEeeCCE----E---ec------------------------CCCeEEEEEeccccCCce
Q psy15206 176 QALHHDMDLDCHIEAYPHPILYWAKDGE----I---VV------------------------NDEYHSISNFGTSEGTTG 224 (232)
Q Consensus 176 ~~~g~~~~l~C~~~~~p~~~~~W~~~g~----~---~~------------------------~~~~~~~~~~~~~~~d~g 224 (232)
+..|++++|.|.........+.|+|... . +. ....+.|.+.++..+|+|
T Consensus 3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDsg 82 (104)
T cd05720 3 AELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENEG 82 (104)
T ss_pred ccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHCE
Confidence 5679999999987555344689987421 1 10 012346777788889999
Q ss_pred EEEEecC
Q psy15206 225 SLQCKVP 231 (232)
Q Consensus 225 ~Y~C~~~ 231 (232)
.|.|.+.
T Consensus 83 tY~Ca~~ 89 (104)
T cd05720 83 YYFCSVA 89 (104)
T ss_pred EEEEEEc
Confidence 9999864
No 323
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.69 E-value=0.00019 Score=43.74 Aligned_cols=57 Identities=21% Similarity=0.336 Sum_probs=35.4
Q ss_pred eeeccCeEEEEEEeecC-CCC--eEEEeeCCEEec----------CCCeEEEEEec-ccc---CCceEEEEecC
Q psy15206 175 GQALHHDMDLDCHIEAY-PHP--ILYWAKDGEIVV----------NDEYHSISNFG-TSE---GTTGSLQCKVP 231 (232)
Q Consensus 175 ~~~~g~~~~l~C~~~~~-p~~--~~~W~~~g~~~~----------~~~~~~~~~~~-~~~---~d~g~Y~C~~~ 231 (232)
.+..|+.++|.|.+.|+ .++ .+.|+|||.... .++.|.+.... ... .+.-.|.|.|.
T Consensus 10 ~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~ 83 (96)
T cd07696 10 QLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVT 83 (96)
T ss_pred HhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEE
Confidence 45568899999999999 443 589999874321 22334333321 222 23447999874
No 324
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.67 E-value=0.00027 Score=42.47 Aligned_cols=62 Identities=23% Similarity=0.468 Sum_probs=41.1
Q ss_pred CCcEEEEeeecc-CCCCeEEEEeCCeeeCC---------CCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCC
Q psy15206 89 GQSVQLECHAEG-HPIPTISWRRENNAILP---------NGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIG 150 (232)
Q Consensus 89 g~~~~l~C~~~~-~~~~~~~W~~~~~~~~~---------~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~ 150 (232)
|+.+.+.|.+.+ .|.+.+.|+.++..... ........+.|.+..-...+...++|.+.+...
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~ 85 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPAL 85 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCcc
Confidence 679999998654 88889999999877611 111111123566655555566799999998653
No 325
>PHA03376 BARF1; Provisional
Probab=97.66 E-value=0.00019 Score=48.33 Aligned_cols=57 Identities=14% Similarity=0.226 Sum_probs=41.5
Q ss_pred eeeeccCeEEEEEEee---cCCCCeEEEeeCCE----E-e---------------------cCCCeEEEEEeccccCCce
Q psy15206 174 IGQALHHDMDLDCHIE---AYPHPILYWAKDGE----I-V---------------------VNDEYHSISNFGTSEGTTG 224 (232)
Q Consensus 174 ~~~~~g~~~~l~C~~~---~~p~~~~~W~~~g~----~-~---------------------~~~~~~~~~~~~~~~~d~g 224 (232)
+....|+++.|.|.-. .-+...|.|+|++. - + .+.+++.|.+.+.+.+|.|
T Consensus 21 Vta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDdG 100 (221)
T PHA03376 21 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDG 100 (221)
T ss_pred hhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCCc
Confidence 4566899999999864 12334699999421 1 1 1356788888999999999
Q ss_pred EEEEec
Q psy15206 225 SLQCKV 230 (232)
Q Consensus 225 ~Y~C~~ 230 (232)
+|+|.+
T Consensus 101 tY~C~f 106 (221)
T PHA03376 101 NYLCRM 106 (221)
T ss_pred eEEEEE
Confidence 999986
No 326
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.65 E-value=0.00023 Score=44.00 Aligned_cols=62 Identities=15% Similarity=0.320 Sum_probs=38.6
Q ss_pred cCCcEEEEeeeccCCCC--eEEEEeCCeeeCCCC-------------cEEeeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206 88 EGQSVQLECHAEGHPIP--TISWRRENNAILPNG-------------QTIFTGSTLQIPRITKEDRGAYYCVAQNGI 149 (232)
Q Consensus 88 ~g~~~~l~C~~~~~~~~--~~~W~~~~~~~~~~~-------------~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~ 149 (232)
.+..+.|.|.+.|..+. .+.|+++|..+.... ......+.|.+..-...+...|.|.+.+..
T Consensus 15 ~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~ 91 (102)
T cd05768 15 LQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEA 91 (102)
T ss_pred cCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCC
Confidence 46789999999994443 589999998753221 011112234444333345557999999854
No 327
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.65 E-value=0.00035 Score=44.59 Aligned_cols=61 Identities=11% Similarity=0.060 Sum_probs=41.3
Q ss_pred cceeeeeccCeEEEEEEeecCC------CCeEEEeeCCE-----E-ec----------------------CCCeEEEEEe
Q psy15206 171 STRIGQALHHDMDLDCHIEAYP------HPILYWAKDGE-----I-VV----------------------NDEYHSISNF 216 (232)
Q Consensus 171 ~~~~~~~~g~~~~l~C~~~~~p------~~~~~W~~~g~-----~-~~----------------------~~~~~~~~~~ 216 (232)
|..+.+..|+.++|.|...... ...+.|+|... . +. ......|.+.
T Consensus 6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~ 85 (119)
T cd05712 6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLIS 85 (119)
T ss_pred CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEc
Confidence 5556788999999999754221 23589997521 1 10 1123567777
Q ss_pred ccccCCceEEEEecC
Q psy15206 217 GTSEGTTGSLQCKVP 231 (232)
Q Consensus 217 ~~~~~d~g~Y~C~~~ 231 (232)
++..+|+|.|.|++.
T Consensus 86 ~l~~~Dsg~Y~C~~~ 100 (119)
T cd05712 86 DAQPEDSGKYFFRVE 100 (119)
T ss_pred cCChhhCeEEEEEEE
Confidence 888899999999873
No 328
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.64 E-value=0.00076 Score=43.02 Aligned_cols=68 Identities=21% Similarity=0.294 Sum_probs=45.3
Q ss_pred CCceEeecCCcEEEEeeeccCC------CCeEEEEeCCeee--------CC---------CCcEEe------eCCeEEEC
Q psy15206 81 PQLSVAKEGQSVQLECHAEGHP------IPTISWRRENNAI--------LP---------NGQTIF------TGSTLQIP 131 (232)
Q Consensus 81 ~~~~~~~~g~~~~l~C~~~~~~------~~~~~W~~~~~~~--------~~---------~~~~~~------~~~~l~i~ 131 (232)
+....+.+|+.+.|.|...... ...+.|++....- .. .+++.. .+.+|.|.
T Consensus 6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~ 85 (119)
T cd05712 6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLIS 85 (119)
T ss_pred CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEc
Confidence 5556788999999999864221 2458999863210 00 012211 12379999
Q ss_pred CCCCCCCeEEEEEeEeC
Q psy15206 132 RITKEDRGAYYCVAQNG 148 (232)
Q Consensus 132 ~~~~~~~g~y~C~~~~~ 148 (232)
+++.+|+|.|.|.+...
T Consensus 86 ~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 86 DAQPEDSGKYFFRVELG 102 (119)
T ss_pred cCChhhCeEEEEEEEcC
Confidence 99999999999998764
No 329
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.62 E-value=0.0003 Score=44.68 Aligned_cols=61 Identities=10% Similarity=0.166 Sum_probs=41.5
Q ss_pred cceeeeeccCeEEEEEEeecCC--CCeEEEeeCC--E-E--e------------c------------C-CCeEEEEEecc
Q psy15206 171 STRIGQALHHDMDLDCHIEAYP--HPILYWAKDG--E-I--V------------V------------N-DEYHSISNFGT 218 (232)
Q Consensus 171 ~~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~g--~-~--~------------~------------~-~~~~~~~~~~~ 218 (232)
|....+..|++++|.|...+.. ...+.|+|.. . . + . . ...+.|.+.++
T Consensus 4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~ 83 (117)
T cd04981 4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSL 83 (117)
T ss_pred CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCC
Confidence 4556778999999999875443 3458998742 1 1 1 0 0 12245777788
Q ss_pred ccCCceEEEEecC
Q psy15206 219 SEGTTGSLQCKVP 231 (232)
Q Consensus 219 ~~~d~g~Y~C~~~ 231 (232)
..+|+|.|.|.+.
T Consensus 84 ~~~Dsa~YyCa~~ 96 (117)
T cd04981 84 TPEDTAVYYCARG 96 (117)
T ss_pred CHHHCEEEEEEEE
Confidence 8899999999863
No 330
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.60 E-value=0.00034 Score=44.06 Aligned_cols=31 Identities=19% Similarity=0.314 Sum_probs=24.2
Q ss_pred eeccCeEEEEEEeecCCCC--eEEEeeCCEEec
Q psy15206 176 QALHHDMDLDCHIEAYPHP--ILYWAKDGEIVV 206 (232)
Q Consensus 176 ~~~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~ 206 (232)
...++.++|.|.+.|+.+. .+.|+|||..+.
T Consensus 15 ~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~ 47 (115)
T cd05769 15 IRNKRKATLVCLATGFYPDHVSLSWKVNGKEVT 47 (115)
T ss_pred hccCCCcEEEEEEEeEeCCCcEEEEEECCEECC
Confidence 3356779999999997555 689999997754
No 331
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.60 E-value=0.00038 Score=42.33 Aligned_cols=27 Identities=11% Similarity=0.345 Sum_probs=22.1
Q ss_pred ccCeEEEEEEeecCCCC--eEEEeeCCEE
Q psy15206 178 LHHDMDLDCHIEAYPHP--ILYWAKDGEI 204 (232)
Q Consensus 178 ~g~~~~l~C~~~~~p~~--~~~W~~~g~~ 204 (232)
.++.++|.|.+.|+.+. .+.|+|||..
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~ 43 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS 43 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE
Confidence 46678999999997554 5899999986
No 332
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=97.57 E-value=0.00035 Score=43.72 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=19.0
Q ss_pred CeEEEEEeccccCCceEEEEecC
Q psy15206 209 EYHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 209 ~~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
....|.+.+++.+|+|.|.|.+.
T Consensus 70 ~~asL~i~nv~~~D~G~Y~C~v~ 92 (110)
T cd05902 70 YNASLVLSRLRYSDSGTYRCEVV 92 (110)
T ss_pred ceEEEEECCCCHHHCEEEEEEEE
Confidence 35677778888899999999874
No 333
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.56 E-value=0.00039 Score=42.31 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=18.9
Q ss_pred eEEEEEeccccCCceEEEEecC
Q psy15206 210 YHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 210 ~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
...|.+.+++.+|+|.|.|.+.
T Consensus 59 d~sI~i~nvt~~D~G~Y~C~~~ 80 (96)
T cd05889 59 DMSLSFNNATEEDVGLYCCSLV 80 (96)
T ss_pred ccEEEEcCCCcccCEEEEEEEE
Confidence 4677888999999999999874
No 334
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.50 E-value=0.00035 Score=38.85 Aligned_cols=49 Identities=16% Similarity=0.287 Sum_probs=33.6
Q ss_pred ccCeEEEEEEeecCCCCeEEEeeCCEEecCCCeEEEEEeccccCCceEEEEecC
Q psy15206 178 LHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 178 ~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
...+|.|.|.. ..+|.|++ |..+.......+.+-.....-.|.|.|.++
T Consensus 5 ~~~~V~L~C~~----~tsi~W~k-G~~~~~~~~~tlnLGs~~~DPRG~Y~C~~s 53 (69)
T cd07691 5 SEGKVFLKCNG----ATNITWKK-GKEILEVSNTLLDLGSRINDPRGTYSCKES 53 (69)
T ss_pred cCceEEEEecC----CCcEEEec-CcccccccccEEeccCcccCCCcceEecCc
Confidence 34578999965 24699999 554443335555555556677899999874
No 335
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.49 E-value=0.0016 Score=39.52 Aligned_cols=62 Identities=24% Similarity=0.471 Sum_probs=36.8
Q ss_pred CCcEEEEeeeccC-CCC-eEEEEeCCeeeCCCC---cEE-eeCCeEE---ECCCCCCCCeEEEEEeEeCCC
Q psy15206 89 GQSVQLECHAEGH-PIP-TISWRRENNAILPNG---QTI-FTGSTLQ---IPRITKEDRGAYYCVAQNGIG 150 (232)
Q Consensus 89 g~~~~l~C~~~~~-~~~-~~~W~~~~~~~~~~~---~~~-~~~~~l~---i~~~~~~~~g~y~C~~~~~~~ 150 (232)
++.+.|.|.+.|. |.. .+.|+++++...... ... ..+++.. .-.+...+...|+|.+.+...
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~~ 84 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSGL 84 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCCC
Confidence 6789999999995 443 799999986322111 111 1111111 122333467899999988643
No 336
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.49 E-value=0.00032 Score=41.13 Aligned_cols=23 Identities=22% Similarity=0.249 Sum_probs=19.3
Q ss_pred CCeEEEEEeccccCCceEEEEec
Q psy15206 208 DEYHSISNFGTSEGTTGSLQCKV 230 (232)
Q Consensus 208 ~~~~~~~~~~~~~~d~g~Y~C~~ 230 (232)
...+.|.+.+++.+|+|.|.|.+
T Consensus 59 ~~~~~L~i~~~~~~D~G~Y~C~v 81 (81)
T smart00406 59 KNDVSLTISNLRVEDTGTYYCAV 81 (81)
T ss_pred CCEEEEEEcCCCHHHCEEEEEcC
Confidence 45577888889999999999975
No 337
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.47 E-value=0.00055 Score=42.51 Aligned_cols=62 Identities=23% Similarity=0.358 Sum_probs=42.0
Q ss_pred eecCCcEEEEeeeccCCCCeEEEEeCCee----e------CC------------CCcEEe----eCCeEEECCCCCCCCe
Q psy15206 86 AKEGQSVQLECHAEGHPIPTISWRRENNA----I------LP------------NGQTIF----TGSTLQIPRITKEDRG 139 (232)
Q Consensus 86 ~~~g~~~~l~C~~~~~~~~~~~W~~~~~~----~------~~------------~~~~~~----~~~~l~i~~~~~~~~g 139 (232)
+.+|+++.|.|.........+.|++.... + .. ..++.. ....|.|.++..+|+|
T Consensus 3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDsg 82 (104)
T cd05720 3 AELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENEG 82 (104)
T ss_pred ccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHCE
Confidence 45799999999886554556999986422 1 00 001111 1236999999999999
Q ss_pred EEEEEeEe
Q psy15206 140 AYYCVAQN 147 (232)
Q Consensus 140 ~y~C~~~~ 147 (232)
.|.|.+..
T Consensus 83 tY~Ca~~~ 90 (104)
T cd05720 83 YYFCSVAS 90 (104)
T ss_pred EEEEEEcc
Confidence 99998763
No 338
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=97.45 E-value=0.00053 Score=42.24 Aligned_cols=22 Identities=14% Similarity=0.259 Sum_probs=18.9
Q ss_pred eEEEEEeccccCCceEEEEecC
Q psy15206 210 YHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 210 ~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
...|.+.+++.+|+|+|.|.+.
T Consensus 63 ~~sL~I~nv~~sD~GtY~C~v~ 84 (100)
T cd05888 63 DGALILRNAVQADEGKYKCRVI 84 (100)
T ss_pred ceEEEEecCccccceEEEEEEE
Confidence 4678888999999999999863
No 339
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.41 E-value=0.0014 Score=41.72 Aligned_cols=67 Identities=30% Similarity=0.530 Sum_probs=45.0
Q ss_pred CCceEeecCCcEEEEeeeccCC--CCeEEEEeCCe--ee------C-----------CCCcEEee--C----CeEEECCC
Q psy15206 81 PQLSVAKEGQSVQLECHAEGHP--IPTISWRRENN--AI------L-----------PNGQTIFT--G----STLQIPRI 133 (232)
Q Consensus 81 ~~~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~~~--~~------~-----------~~~~~~~~--~----~~l~i~~~ 133 (232)
+....+.+|++++|.|...+.. ...+.||+... .+ . ...++... . ..|.|.++
T Consensus 4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~ 83 (117)
T cd04981 4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSL 83 (117)
T ss_pred CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCC
Confidence 4556788999999999875432 45699998532 11 0 01122111 1 26899999
Q ss_pred CCCCCeEEEEEeEe
Q psy15206 134 TKEDRGAYYCVAQN 147 (232)
Q Consensus 134 ~~~~~g~y~C~~~~ 147 (232)
..+|+|.|.|.+..
T Consensus 84 ~~~Dsa~YyCa~~~ 97 (117)
T cd04981 84 TPEDTAVYYCARGL 97 (117)
T ss_pred CHHHCEEEEEEEEc
Confidence 99999999998764
No 340
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.41 E-value=0.0015 Score=36.43 Aligned_cols=49 Identities=24% Similarity=0.574 Sum_probs=36.2
Q ss_pred CCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEe
Q psy15206 89 GQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQN 147 (232)
Q Consensus 89 g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~ 147 (232)
..++.|.|.. ..++.|++ |..+.... ..++.+-....+..|.|.|.+.+
T Consensus 6 ~~~V~L~C~~----~tsi~W~k-G~~~~~~~-----~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNG----ATNITWKK-GKEILEVS-----NTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred CceEEEEecC----CCcEEEec-Cccccccc-----ccEEeccCcccCCCcceEecCcc
Confidence 4579999965 24699999 65543221 45688888888999999998865
No 341
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.38 E-value=0.0012 Score=40.12 Aligned_cols=63 Identities=19% Similarity=0.295 Sum_probs=39.4
Q ss_pred cCCcEEEEeeecc-CCC-CeEEEEeCCeeeCCCC----------cEEeeCCeEEECCCCCCCCeEEEEEeEeCCC
Q psy15206 88 EGQSVQLECHAEG-HPI-PTISWRRENNAILPNG----------QTIFTGSTLQIPRITKEDRGAYYCVAQNGIG 150 (232)
Q Consensus 88 ~g~~~~l~C~~~~-~~~-~~~~W~~~~~~~~~~~----------~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~ 150 (232)
....+.|.|.+.| +|. ..+.|+++|..+.... ......+.|.+..-...+...|.|.+.+...
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~ 87 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGT 87 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCe
Confidence 3456899999999 444 4689999988752211 1111123455554444456689999998643
No 342
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=97.37 E-value=0.0014 Score=39.85 Aligned_cols=22 Identities=18% Similarity=0.108 Sum_probs=18.4
Q ss_pred eEEEEEeccccCCceEEEEecC
Q psy15206 210 YHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 210 ~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
...|.+.+++.+|.|.|+|++.
T Consensus 59 d~sl~i~nv~~~D~G~Y~C~v~ 80 (96)
T cd05887 59 DATIMLENVGFSDIGVYICKAV 80 (96)
T ss_pred ccEEEEeCCCccccEEEEEEEE
Confidence 3477788899999999999974
No 343
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.37 E-value=0.0012 Score=40.34 Aligned_cols=40 Identities=18% Similarity=0.404 Sum_probs=27.0
Q ss_pred cEEEec-cceeeeeccCeEEEEEEeecCC-C--CeEEEeeCCEE
Q psy15206 165 PIVTVQ-STRIGQALHHDMDLDCHIEAYP-H--PILYWAKDGEI 204 (232)
Q Consensus 165 p~~~~~-~~~~~~~~g~~~~l~C~~~~~p-~--~~~~W~~~g~~ 204 (232)
|.+.+. |.......+..++|.|.+.++. + ..|.|.++|..
T Consensus 4 PsV~l~pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~ 47 (99)
T cd04986 4 PSLSLQRPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK 47 (99)
T ss_pred CEEEEECcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc
Confidence 444333 3333344678899999999966 3 25999999753
No 344
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.35 E-value=0.0012 Score=41.60 Aligned_cols=63 Identities=22% Similarity=0.374 Sum_probs=40.0
Q ss_pred cCCcEEEEeeeccC-CC-CeEEEEeCCeeeCCCC-----------cEEeeCCeEEECCCCCCC-CeEEEEEeEeCCC
Q psy15206 88 EGQSVQLECHAEGH-PI-PTISWRRENNAILPNG-----------QTIFTGSTLQIPRITKED-RGAYYCVAQNGIG 150 (232)
Q Consensus 88 ~g~~~~l~C~~~~~-~~-~~~~W~~~~~~~~~~~-----------~~~~~~~~l~i~~~~~~~-~g~y~C~~~~~~~ 150 (232)
.+..+.|.|.+.+. |. ..+.|++++..+.... ......+.|.+......+ ...|.|.+.+...
T Consensus 17 ~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~ 93 (115)
T cd05769 17 NKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGG 93 (115)
T ss_pred cCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCC
Confidence 45678999999994 44 3689999997754221 111122345555544433 4589999998643
No 345
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.32 E-value=0.00088 Score=40.83 Aligned_cols=64 Identities=17% Similarity=0.246 Sum_probs=38.3
Q ss_pred eecCCcEEEEeeeccC-CCC--eEEEEeCCeeeCCC---------CcEEeeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206 86 AKEGQSVQLECHAEGH-PIP--TISWRRENNAILPN---------GQTIFTGSTLQIPRITKEDRGAYYCVAQNGI 149 (232)
Q Consensus 86 ~~~g~~~~l~C~~~~~-~~~--~~~W~~~~~~~~~~---------~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~ 149 (232)
+..++.+.|.|.+.|. .++ .+.|.++++..... .......+.|.+..-...+.-.|.|.+.+..
T Consensus 11 l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~ 86 (96)
T cd07696 11 LLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPD 86 (96)
T ss_pred hccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCC
Confidence 4457899999999998 443 58999987433210 0011112234444433334447999999864
No 346
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=97.28 E-value=0.0022 Score=40.44 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=19.3
Q ss_pred CeEEEEEeccccCCceEEEEecC
Q psy15206 209 EYHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 209 ~~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
+...|.+.+++..|+|.|.|++.
T Consensus 77 g~asL~i~~v~~sD~G~Y~C~V~ 99 (117)
T cd05901 77 GDASLTIVKLRASDAGVYRCEVM 99 (117)
T ss_pred CceEEEEcccccccCEEEEEEEE
Confidence 35678888889999999999874
No 347
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.27 E-value=0.0032 Score=38.24 Aligned_cols=59 Identities=22% Similarity=0.361 Sum_probs=37.4
Q ss_pred cCCcEEEEeeeccC-CCC-eEEEEeCCeeeCCCC---cEE-eeC------CeEEECCCCCCCCeEEEEEeEeCC
Q psy15206 88 EGQSVQLECHAEGH-PIP-TISWRRENNAILPNG---QTI-FTG------STLQIPRITKEDRGAYYCVAQNGI 149 (232)
Q Consensus 88 ~g~~~~l~C~~~~~-~~~-~~~W~~~~~~~~~~~---~~~-~~~------~~l~i~~~~~~~~g~y~C~~~~~~ 149 (232)
.++.+.|.|.+.|. |.. .+.|+++|..+.... ... ..+ +.|.+ ...+...|.|.+.+..
T Consensus 13 ~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~---~~~~~~~ysC~V~H~~ 83 (94)
T cd05766 13 LSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLET---TPSRGDTYTCVVEHSS 83 (94)
T ss_pred CCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEE---cCCCCCEEEEEEEeCC
Confidence 57889999999994 433 689999998754321 000 111 23333 2345558999999864
No 348
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=97.25 E-value=0.0045 Score=37.60 Aligned_cols=68 Identities=16% Similarity=0.266 Sum_probs=42.4
Q ss_pred CceEeecCCcEEE-Eeeec-cCCCCeEEEEeCCeeeCCC------CcEEeeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206 82 QLSVAKEGQSVQL-ECHAE-GHPIPTISWRRENNAILPN------GQTIFTGSTLQIPRITKEDRGAYYCVAQNGI 149 (232)
Q Consensus 82 ~~~~~~~g~~~~l-~C~~~-~~~~~~~~W~~~~~~~~~~------~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~ 149 (232)
....+.+|+.+.+ .|.+. |.|.+.|.|+.+....... .......+.+.+......|...++|.+.+..
T Consensus 9 ~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~a 84 (97)
T cd07704 9 PSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPA 84 (97)
T ss_pred CeeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcc
Confidence 3345667888888 88864 5888899999874332110 1112222355555555556669999998853
No 349
>KOG1480|consensus
Probab=97.23 E-value=0.00047 Score=56.09 Aligned_cols=151 Identities=20% Similarity=0.359 Sum_probs=91.4
Q ss_pred CCCeeecCCCcceEeecCCeEEEEEEecCCC----CCeEEEEeCcEee---------e----eEEEEe------------
Q psy15206 11 TPPVILNNSTQLSVAKEGQSVQLECHAEGHP----IPTISWRRNFKRL---------G----RLHLAI------------ 61 (232)
Q Consensus 11 ~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p----~~~~~W~~~~~~~---------~----~~~~~~------------ 61 (232)
.-|.|+.. +.+..+..|..+.|.|.+...+ .+.-.|..+.... | ...+.+
T Consensus 23 ~l~~~~~~-p~~~yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~si~Isr~~v~~~~~~~ 101 (909)
T KOG1480|consen 23 DLPHFTTE-PKSAYIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLEGTDETSGLGVREVSIDISRQQVETSGGPE 101 (909)
T ss_pred Ccceeeec-CCccceecCCCccceecCCcccccccccChhhhcCccceeeeccCcccceeEEeeeeeeehhhhhcccCcc
Confidence 45677777 8888899999999999997432 2333476632111 1 111111
Q ss_pred eee---------------cCceeecCCcEEecCCCCceEeecCCcEEEEeee-ccCCCCeEEEEeCCeeeCCCCcE-Eee
Q psy15206 62 PYT---------------SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHA-EGHPIPTISWRRENNAILPNGQT-IFT 124 (232)
Q Consensus 62 ~~~---------------~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~~W~~~~~~~~~~~~~-~~~ 124 (232)
.|. ...+...+........+...-+..+....+.|.. .+.+...+.|++++..+.+..+. ...
T Consensus 102 d~~cQc~a~~~~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~ 181 (909)
T KOG1480|consen 102 DYWCQCVAWSDDGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRAS 181 (909)
T ss_pred ceeeeeeeecCCCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccchhhhhhccccCCCCCccccchhhh
Confidence 111 0000000111122223334455566777888875 56777789999998877654332 224
Q ss_pred CCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEE
Q psy15206 125 GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE 162 (232)
Q Consensus 125 ~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~ 162 (232)
...+.+..++..|.|+|+|.+.+..+......+.+.+.
T Consensus 182 d~~li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~vy 219 (909)
T KOG1480|consen 182 DHNLIISQARLSDSGNYTCEATNIVAKRKSDPATVQVY 219 (909)
T ss_pred cCCccccchhhhhcccceeeeehhhccccccceEEEEE
Confidence 56788999999999999999999877655555555554
No 350
>PHA02982 hypothetical protein; Provisional
Probab=97.15 E-value=0.014 Score=40.22 Aligned_cols=115 Identities=15% Similarity=0.283 Sum_probs=68.1
Q ss_pred EeecCCcEEEEeeeccC-CCCeEEEEeCCeeeCC----------C------C-c------EEeeCCeEEECCCCCCCCeE
Q psy15206 85 VAKEGQSVQLECHAEGH-PIPTISWRRENNAILP----------N------G-Q------TIFTGSTLQIPRITKEDRGA 140 (232)
Q Consensus 85 ~~~~g~~~~l~C~~~~~-~~~~~~W~~~~~~~~~----------~------~-~------~~~~~~~l~i~~~~~~~~g~ 140 (232)
....++++.|.|..... .-.+..|++...-... . . . .....++|+|.++..+..|.
T Consensus 35 ~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~GC 114 (251)
T PHA02982 35 NATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLGC 114 (251)
T ss_pred hccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCCc
Confidence 34458899999985432 2335779875422111 0 0 0 01235789999999999999
Q ss_pred EEEEeEeCCCCceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEE
Q psy15206 141 YYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEI 204 (232)
Q Consensus 141 y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~ 204 (232)
|+|.+....+....-...+.|+.-..+ .. -........+.|-+-+...+-..|.-+|..
T Consensus 115 Ytc~~ks~~~k~E~c~kCl~V~~~~V~-~~----W~e~nNeT~V~CyVgS~~~dvp~W~V~GVv 173 (251)
T PHA02982 115 FTCEAKDAEGKEETCEKCLEIQKEDIL-YV----VEEHNNETIITCFVGSKHGDVPRFIVAGIV 173 (251)
T ss_pred eEEEEecCCCchheeheeeeEecceEE-EE----EEecCCeEEEEEEEEeccCCCccEEEeeEE
Confidence 999999876554443445555321111 10 112344567889875544443589877753
No 351
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.13 E-value=0.0027 Score=35.10 Aligned_cols=51 Identities=22% Similarity=0.457 Sum_probs=34.4
Q ss_pred ecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEe
Q psy15206 87 KEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQN 147 (232)
Q Consensus 87 ~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~ 147 (232)
..|..|.|+|.... ..+.|.+++..+... ...+.+.+-. ++.|.|.|.+.+
T Consensus 5 isGTtVtlTCP~~~---~~i~W~~n~~~~~g~------~~~~~~~~~~-e~~G~Y~C~~~~ 55 (65)
T cd07692 5 ISGTTVTVTCPLSG---DDIKWKKNDQVSQGS------DEKYLSLNHF-SSSGYYHCTADN 55 (65)
T ss_pred EeccEEEEECCCCC---CCceEEeCCccCCCC------CceEEeeccC-CCCceEEEEeCC
Confidence 46889999997642 239999998554331 2233344444 889999999864
No 352
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=97.12 E-value=0.0023 Score=39.21 Aligned_cols=22 Identities=18% Similarity=0.134 Sum_probs=18.6
Q ss_pred eEEEEEeccccCCceEEEEecC
Q psy15206 210 YHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 210 ~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
...|.+.+++.+|.|.|+|.+.
T Consensus 62 daSi~i~nl~~~D~G~Y~C~v~ 83 (99)
T cd05886 62 DGTISLSRLELEDEGVYICEFA 83 (99)
T ss_pred cceEEEcCCccccCEEEEEEEE
Confidence 3577788899999999999974
No 353
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.11 E-value=0.0044 Score=36.62 Aligned_cols=60 Identities=23% Similarity=0.395 Sum_probs=39.3
Q ss_pred cCCcEEEEeeecc-CCCC-eEEEEeCCeeeCCCCcE----------EeeCCeEEECCCCCCCCeEEEEEeEeCCC
Q psy15206 88 EGQSVQLECHAEG-HPIP-TISWRRENNAILPNGQT----------IFTGSTLQIPRITKEDRGAYYCVAQNGIG 150 (232)
Q Consensus 88 ~g~~~~l~C~~~~-~~~~-~~~W~~~~~~~~~~~~~----------~~~~~~l~i~~~~~~~~g~y~C~~~~~~~ 150 (232)
.++.+.|.|.+.+ +|.. .+.|++++..+...... ....+.|.+. ..+...|.|.+.+...
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l 78 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESL 78 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCC
Confidence 3788999999998 4433 69999999876432211 1112244444 4555589999998644
No 354
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.05 E-value=0.0018 Score=37.89 Aligned_cols=20 Identities=40% Similarity=0.878 Sum_probs=17.7
Q ss_pred CeEEECCCCCCCCeEEEEEe
Q psy15206 126 STLQIPRITKEDRGAYYCVA 145 (232)
Q Consensus 126 ~~l~i~~~~~~~~g~y~C~~ 145 (232)
.+|.|.+++.+|.|.|.|.+
T Consensus 62 ~~L~i~~~~~~D~G~Y~C~v 81 (81)
T smart00406 62 VSLTISNLRVEDTGTYYCAV 81 (81)
T ss_pred EEEEEcCCCHHHCEEEEEcC
Confidence 36999999999999999964
No 355
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.03 E-value=0.0029 Score=38.62 Aligned_cols=64 Identities=14% Similarity=0.138 Sum_probs=38.3
Q ss_pred eecCCcEEEEeeeccCC--C-CeEEEEeCCeeeCC-------CCcEEeeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206 86 AKEGQSVQLECHAEGHP--I-PTISWRRENNAILP-------NGQTIFTGSTLQIPRITKEDRGAYYCVAQNGI 149 (232)
Q Consensus 86 ~~~g~~~~l~C~~~~~~--~-~~~~W~~~~~~~~~-------~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~ 149 (232)
+..+..++|.|.+.+.. . ..+.|.++|+.-.. ........+.|.+..-.......|+|.+.+..
T Consensus 16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~ 89 (99)
T cd04986 16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGKEAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPE 89 (99)
T ss_pred hCcCCccEEEEEEeccCCCCCeEEEEEECCccCcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCC
Confidence 33577899999999844 2 36999998864100 00111112345555433344457999998854
No 356
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.02 E-value=0.0076 Score=36.69 Aligned_cols=60 Identities=17% Similarity=0.238 Sum_probs=36.0
Q ss_pred cCCcEEEEeeeccC-CC-CeEEEEeCCeeeCCC---------CcEEeeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206 88 EGQSVQLECHAEGH-PI-PTISWRRENNAILPN---------GQTIFTGSTLQIPRITKEDRGAYYCVAQNGI 149 (232)
Q Consensus 88 ~g~~~~l~C~~~~~-~~-~~~~W~~~~~~~~~~---------~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~ 149 (232)
.+..+.|.|.+.|. |. ..+.|.++|..+... .......+.|.+..-. ....|+|.+.+..
T Consensus 15 ~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~g 85 (96)
T cd07697 15 KQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHEG 85 (96)
T ss_pred cCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchh--CCCeEEEEEEECC
Confidence 35678999999994 43 358999999875321 1111112344444322 2235999999853
No 357
>PHA03269 envelope glycoprotein C; Provisional
Probab=97.00 E-value=0.013 Score=45.57 Aligned_cols=78 Identities=19% Similarity=0.247 Sum_probs=58.1
Q ss_pred eEEECCCCCCCCeEEEEEeEeCC-C-CceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecCCCC---eEEEeeC
Q psy15206 127 TLQIPRITKEDRGAYYCVAQNGI-G-RGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHP---ILYWAKD 201 (232)
Q Consensus 127 ~l~i~~~~~~~~g~y~C~~~~~~-~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~---~~~W~~~ 201 (232)
.|.|..++..+.|.|.-.+.+.. + ....+.+.+.+.-+|.+.+.+. .+.+|+...-.|.+..+.++ .+.|++|
T Consensus 290 pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~--PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~n 367 (566)
T PHA03269 290 SLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGD--PVLLGNPYAAYCKVNKYYPPHSVIVKWTSN 367 (566)
T ss_pred ceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 58999999999999987765432 1 1234566777777887766554 35689999999998776655 4999999
Q ss_pred CEEec
Q psy15206 202 GEIVV 206 (232)
Q Consensus 202 g~~~~ 206 (232)
|..+.
T Consensus 368 g~~V~ 372 (566)
T PHA03269 368 FGNIG 372 (566)
T ss_pred CcccC
Confidence 87765
No 358
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=96.96 E-value=0.0044 Score=38.73 Aligned_cols=59 Identities=14% Similarity=0.125 Sum_probs=39.3
Q ss_pred eeeeeccCeEEEEEEeecCCCC---eEEEeeCCE-Ee-------------------------cCCCeEEEEEeccccCCc
Q psy15206 173 RIGQALHHDMDLDCHIEAYPHP---ILYWAKDGE-IV-------------------------VNDEYHSISNFGTSEGTT 223 (232)
Q Consensus 173 ~~~~~~g~~~~l~C~~~~~p~~---~~~W~~~g~-~~-------------------------~~~~~~~~~~~~~~~~d~ 223 (232)
...+..|+.++|.|...|+-.. .+.|.|+.. .+ .+.+...+.+.+.+.+|+
T Consensus 7 ~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DT 86 (115)
T cd05721 7 PVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQT 86 (115)
T ss_pred CeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHC
Confidence 3445677889999988665433 478887411 11 023446777777888999
Q ss_pred eEEEEecC
Q psy15206 224 GSLQCKVP 231 (232)
Q Consensus 224 g~Y~C~~~ 231 (232)
+.|.|...
T Consensus 87 a~Y~Ca~e 94 (115)
T cd05721 87 DIYFCKIE 94 (115)
T ss_pred eEEEEEee
Confidence 99999754
No 359
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=96.93 E-value=0.014 Score=35.50 Aligned_cols=61 Identities=18% Similarity=0.280 Sum_probs=37.1
Q ss_pred CCcEEEEeeec-cCCCCeEEEEeCCeeeCC------CCcEEeeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206 89 GQSVQLECHAE-GHPIPTISWRRENNAILP------NGQTIFTGSTLQIPRITKEDRGAYYCVAQNGI 149 (232)
Q Consensus 89 g~~~~l~C~~~-~~~~~~~~W~~~~~~~~~------~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~ 149 (232)
.....+.|.+. |.|.+.|.|+++...... ........+.|.+.....++...|+|.+.+..
T Consensus 15 ~~~~va~C~s~~gkP~a~ItW~~~~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~ 82 (95)
T cd05719 15 EPVTVATCVSANGKPPATISWETTLGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPT 82 (95)
T ss_pred CccEEEEEECCCCcCCCEEEEEeCCCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcc
Confidence 34567899984 588889999996211110 01111122356665555555569999999864
No 360
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.93 E-value=0.007 Score=36.82 Aligned_cols=61 Identities=23% Similarity=0.415 Sum_probs=36.3
Q ss_pred cCCcEEEEeeeccCCC--CeEEEEeCCeeeCCCC----------cEEeeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206 88 EGQSVQLECHAEGHPI--PTISWRRENNAILPNG----------QTIFTGSTLQIPRITKEDRGAYYCVAQNGI 149 (232)
Q Consensus 88 ~g~~~~l~C~~~~~~~--~~~~W~~~~~~~~~~~----------~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~ 149 (232)
.++.+.|.|.+.|..+ ..+.|.++|.. .... ......+.|.+..-.......|.|.+.+..
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 4567999999999444 35899999986 2110 001111234444333223457999998854
No 361
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=96.92 E-value=0.0081 Score=36.44 Aligned_cols=58 Identities=17% Similarity=0.359 Sum_probs=36.1
Q ss_pred CCcEEEEeeeccC-CC-CeEEEEeCCeeeCCCCc----------EEeeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206 89 GQSVQLECHAEGH-PI-PTISWRRENNAILPNGQ----------TIFTGSTLQIPRITKEDRGAYYCVAQNGI 149 (232)
Q Consensus 89 g~~~~l~C~~~~~-~~-~~~~W~~~~~~~~~~~~----------~~~~~~~l~i~~~~~~~~g~y~C~~~~~~ 149 (232)
++...|.|.+.|. |. ..++|.++|..+..... .....+.|.+.. .+...|+|.+.+..
T Consensus 15 ~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~~---~~~~~ytC~V~H~~ 84 (94)
T cd05767 15 GEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFTP---EEGDIYSCIVEHWG 84 (94)
T ss_pred CCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEEC---CCCCeEEEEEEeCC
Confidence 5568999999994 43 46899999987543211 011112344433 34558999999853
No 362
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=96.91 E-value=0.0078 Score=36.41 Aligned_cols=61 Identities=16% Similarity=0.238 Sum_probs=37.0
Q ss_pred cCCcEEEEeeeccCCC--CeEEEEeCCeeeCCCCcE----EeeCCeEEE---CCCCCCCCeEEEEEeEeCC
Q psy15206 88 EGQSVQLECHAEGHPI--PTISWRRENNAILPNGQT----IFTGSTLQI---PRITKEDRGAYYCVAQNGI 149 (232)
Q Consensus 88 ~g~~~~l~C~~~~~~~--~~~~W~~~~~~~~~~~~~----~~~~~~l~i---~~~~~~~~g~y~C~~~~~~ 149 (232)
.|+...|.|.+.|..+ ..+.|.++|..+. .... ...+++..+ -.+...+...|.|.+.+..
T Consensus 14 ~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~ 83 (93)
T cd05770 14 NGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNS 83 (93)
T ss_pred CCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECC
Confidence 4666789999999443 3589999998764 2110 111222221 1233455668999999853
No 363
>PHA03270 envelope glycoprotein C; Provisional
Probab=96.83 E-value=0.12 Score=39.92 Aligned_cols=110 Identities=14% Similarity=0.126 Sum_probs=62.0
Q ss_pred EeecCCcEEEEeeeccCCCC---eEEEEeCCeeeCCCCcEE----------eeCCeEEECCCCCCCC-eEEEEEeEeCCC
Q psy15206 85 VAKEGQSVQLECHAEGHPIP---TISWRRENNAILPNGQTI----------FTGSTLQIPRITKEDR-GAYYCVAQNGIG 150 (232)
Q Consensus 85 ~~~~g~~~~l~C~~~~~~~~---~~~W~~~~~~~~~~~~~~----------~~~~~l~i~~~~~~~~-g~y~C~~~~~~~ 150 (232)
.+.+|+...-.|.+..+.++ .+.||.++..+....... ...+++.+........ -..+|.+.-...
T Consensus 230 PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd 309 (466)
T PHA03270 230 AVLEGEPFGATCVAANYYPGDRAAFRWFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRD 309 (466)
T ss_pred ccccCCCceEEEEeeeecCCCceEEEEEeCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccC
Confidence 45689999999999774443 499999998774322110 1123444444322222 368999875332
Q ss_pred C----ceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecCCC-CeEEEeeCC
Q psy15206 151 R----GARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPH-PILYWAKDG 202 (232)
Q Consensus 151 ~----~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~~~W~~~g 202 (232)
. ..++.....|..+|.+.+.. ..|+ ..|.+.--|. ..+.|+-++
T Consensus 310 ~vS~sR~nAa~~P~VY~~P~Isv~F-----~dG~---AVCtA~CVPegV~l~W~V~D 358 (466)
T PHA03270 310 SVSFSRRNATGAPTVLPRPTIEMEF-----GGDE---AVCTAACVPEGVTLAWLLGA 358 (466)
T ss_pred CccceeecccccCccccCCeEEEEE-----eCCE---EEEeccccCCCCEEEEEecC
Confidence 2 12333444566677665532 2232 3466655443 369997654
No 364
>PHA03270 envelope glycoprotein C; Provisional
Probab=96.74 E-value=0.025 Score=43.45 Aligned_cols=79 Identities=16% Similarity=0.242 Sum_probs=59.9
Q ss_pred CeEEECCCCCCCCeEEEEEeEeCCCC-ceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecCCCC---eEEEeeC
Q psy15206 126 STLQIPRITKEDRGAYYCVAQNGIGR-GARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHP---ILYWAKD 201 (232)
Q Consensus 126 ~~l~i~~~~~~~~g~y~C~~~~~~~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~---~~~W~~~ 201 (232)
..|.|..++....|.|+-...+..+. ...+.+++...-+|.+.+.+. .+-.|+...-.|.+..+.++ .+.|++|
T Consensus 182 ~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~--PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~n 259 (466)
T PHA03270 182 QRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPH--AVLEGEPFGATCVAANYYPGDRAAFRWFEG 259 (466)
T ss_pred ceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 35899999999999999997765433 233456666677888776655 35689999999998776655 4999999
Q ss_pred CEEec
Q psy15206 202 GEIVV 206 (232)
Q Consensus 202 g~~~~ 206 (232)
|..+.
T Consensus 260 g~~V~ 264 (466)
T PHA03270 260 GDEVF 264 (466)
T ss_pred Ccccc
Confidence 98764
No 365
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=96.73 E-value=0.59 Score=44.94 Aligned_cols=181 Identities=10% Similarity=0.092 Sum_probs=99.4
Q ss_pred CcceEeecCCeEEEEEEecCCCCCeEEEEeCcEee----------------eeEEEEeeee--------cCceeecCCcE
Q psy15206 20 TQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL----------------GRLHLAIPYT--------SPEAQVDTPPV 75 (232)
Q Consensus 20 ~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~~----------------~~~~~~~~~~--------~~~l~v~~~p~ 75 (232)
.....+..|+.++|.+.+...+...+.|...+... |.|.+...-. .+.+.|..+-.
T Consensus 1874 as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~~~t~~~t~~HsY~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle~V~ 1953 (2740)
T TIGR00864 1874 ASKKIAAIGEKVEFQILLAAGSAVNFRLQIGGAAPEVLQPGPRFSHSFPRVDDHMVNLRAKNEVSCAQANLHIEVLEAVR 1953 (2740)
T ss_pred cccccccCCCEEEEEEEecCCCceEEEEEeCCCCceeecCCCeEEeecCCCCcEEEEEEEEeccceeeeeEEEEEEEecc
Confidence 44556789999999999987778899999842111 1222222111 22233322211
Q ss_pred EecC-CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeE--eCCCCc
Q psy15206 76 ILNN-SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQ--NGIGRG 152 (232)
Q Consensus 76 ~~~~-~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~--~~~~~~ 152 (232)
-..+ ......+..|+...|........+..+.|+.....+.........+...+.. ....|.|.-.+. |..+.
T Consensus 1954 gL~I~~~c~~~~~~g~~~tF~A~v~~g~~V~f~W~f~~~~~~g~~~~~~~G~~vty~---~~~~G~~~I~v~A~N~l~s- 2029 (2740)
T TIGR00864 1954 GLQIPDCCAAGIATGEEKNFTANVQRGKPVAFAWTFDLHHLHGDSLVIHMGKDVSYT---AEAAGLLEIQLGAFNALGA- 2029 (2740)
T ss_pred ceEecCCcccceecCceEEEEEEEecCCceEEEEEeeecccCCCcceeecCCceEEc---cCCCcEEEEEEEEEcccCc-
Confidence 1110 1111124568888888887655566789986532222222222222222222 246788877754 55565
Q ss_pred eeeEEEEEEEeccE-EEeccceeeeeccCeEEEEEEeecCC-CCeEEEeeC-CEE
Q psy15206 153 ARRKIEVKVEFAPI-VTVQSTRIGQALHHDMDLDCHIEAYP-HPILYWAKD-GEI 204 (232)
Q Consensus 153 ~~~~~~l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~~~W~~~-g~~ 204 (232)
......+.|+.+.. ..+.........+..+.+.|.....+ ...+.|-.+ |..
T Consensus 2030 ~n~t~~i~VQ~~i~~~~L~~~p~~~~~n~~v~f~~~~~~~~~~v~~~WDFGDGt~ 2084 (2740)
T TIGR00864 2030 ENITLQLEAQDALMDAALQAGPQDCFTNKMAQFEAATSPKPNFMACHWDFGDGSA 2084 (2740)
T ss_pred ccccEEEEEEeheeeEEEeecCcceecCceEEEEEEEccCCCcEEEEEEecCCCC
Confidence 44555666665543 22332334456788999999985544 347999875 443
No 366
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=96.66 E-value=0.0094 Score=36.12 Aligned_cols=56 Identities=13% Similarity=0.255 Sum_probs=35.7
Q ss_pred eeccCeEEEEEEeec-CCC--CeEEEeeCCEEecCCC-------------eEEEEEeccccCCce-EEEEecCC
Q psy15206 176 QALHHDMDLDCHIEA-YPH--PILYWAKDGEIVVNDE-------------YHSISNFGTSEGTTG-SLQCKVPV 232 (232)
Q Consensus 176 ~~~g~~~~l~C~~~~-~p~--~~~~W~~~g~~~~~~~-------------~~~~~~~~~~~~d~g-~Y~C~~~~ 232 (232)
...|..+++.|.+.+ .|. ..+.|+++...+.... ...++..- +.+|.| +|.|+|.+
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L 84 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKL 84 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEec-chhhCCcEEEEEEEE
Confidence 468999999999865 444 3599998765443211 12222222 356777 99999853
No 367
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=96.63 E-value=0.014 Score=35.44 Aligned_cols=60 Identities=15% Similarity=0.251 Sum_probs=36.3
Q ss_pred CcEEEEeeec-cCCCCeEEEEeCCeeeCCC------CcEEeeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206 90 QSVQLECHAE-GHPIPTISWRRENNAILPN------GQTIFTGSTLQIPRITKEDRGAYYCVAQNGI 149 (232)
Q Consensus 90 ~~~~l~C~~~-~~~~~~~~W~~~~~~~~~~------~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~ 149 (232)
....+.|.+. +.|...|.|+++....... .......+.|.+.....+|...|+|.+.+..
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~a 82 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGGNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHET 82 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcc
Confidence 3468899875 5788899999873221100 0111112355555555555569999999854
No 368
>PHA03273 envelope glycoprotein C; Provisional
Probab=96.60 E-value=0.22 Score=38.93 Aligned_cols=111 Identities=17% Similarity=0.191 Sum_probs=65.1
Q ss_pred eEeecCCcEEEEeeeccCCCC---eEEEEeCCeeeCCCCc----EE-------eeCCeEEECCCCC-CCCeEEEEEeEeC
Q psy15206 84 SVAKEGQSVQLECHAEGHPIP---TISWRRENNAILPNGQ----TI-------FTGSTLQIPRITK-EDRGAYYCVAQNG 148 (232)
Q Consensus 84 ~~~~~g~~~~l~C~~~~~~~~---~~~W~~~~~~~~~~~~----~~-------~~~~~l~i~~~~~-~~~g~y~C~~~~~ 148 (232)
..+.+|+...-.|.+..+-++ .+.|+.++..+..... .. ...+.|.+..... ...-..+|.+.-.
T Consensus 245 ~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~ 324 (486)
T PHA03273 245 HPSLKGENYRAVCVVASYFPHSSVKLRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWY 324 (486)
T ss_pred CccccCCCceEEEEeeeecCCCceEEEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEc
Confidence 346689999999999774433 4999999988762221 11 1123455555322 3334789998754
Q ss_pred CCCce----eeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecCCC--CeEEEeeCC
Q psy15206 149 IGRGA----RRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPH--PILYWAKDG 202 (232)
Q Consensus 149 ~~~~~----~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~~~W~~~g 202 (232)
..... .+.....|..+|.+.+. ...| ...|.+.--|. ..+.|+-+.
T Consensus 325 rd~vS~~RfsAt~~P~Vy~~P~Is~~-----F~~G---~AVCtA~CVP~egV~l~W~v~D 376 (486)
T PHA03273 325 RDEVSFARIAKAGTPSVFVAPTVSVT-----VEDG---DAVCTAKCVPSTGVFVSWSVND 376 (486)
T ss_pred cCCcceeeccccccCccccCCeEEEE-----EeCC---EEEEecccccCCCeeEEEEccC
Confidence 33211 23344456666766553 2223 34587766665 469997654
No 369
>PHA03269 envelope glycoprotein C; Provisional
Probab=96.53 E-value=0.12 Score=40.58 Aligned_cols=126 Identities=17% Similarity=0.125 Sum_probs=69.2
Q ss_pred CceeecCCcEEecCCCCceEeecCCcEEEEeeeccCCCC---eEEEEeCCeeeCCCCc---E-------EeeCCeEEECC
Q psy15206 66 PEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIP---TISWRRENNAILPNGQ---T-------IFTGSTLQIPR 132 (232)
Q Consensus 66 ~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~---~~~W~~~~~~~~~~~~---~-------~~~~~~l~i~~ 132 (232)
+.+.+..+|.+.. ....+.+|+...-.|.+..+-++ .+.|+.++..+..... . ....++|.+..
T Consensus 322 VtV~~yr~PsVsV---~p~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~ 398 (566)
T PHA03269 322 ITVMSYKRPNITV---IGDPVLLGNPYAAYCKVNKYYPPHSVIVKWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPA 398 (566)
T ss_pred EEEEEecCCCccc---cCCccccCCCceEEEEeeeecCCCceEEEEEeCCcccCccccccceeecCCCceEEEEEEeccC
Confidence 3344455553322 22346689999999999774433 4999999887753111 1 11123454433
Q ss_pred CCCCC--CeEEEEEeEeCCCCce----eeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecCCC--CeEEEeeCC
Q psy15206 133 ITKED--RGAYYCVAQNGIGRGA----RRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPH--PILYWAKDG 202 (232)
Q Consensus 133 ~~~~~--~g~y~C~~~~~~~~~~----~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~~~W~~~g 202 (232)
....+ .-..+|.+.-..+... +......|..+|.+... ...| ...|.+.--|. ..+.|+-+.
T Consensus 399 ~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~VY~~PtISm~-----FedG---~AVCtA~CVP~~~V~l~WlVgD 468 (566)
T PHA03269 399 QKNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPDVYPFPNVSIE-----IIDG---HIVCLAKCVPRGVVHFNWWIND 468 (566)
T ss_pred ccccCCCCCCceEEEEEccCCchheecccccCCccccCCeEEEE-----EeCC---EEEEecccccCCCceEEEEecC
Confidence 21122 3467999875433211 23444456667776553 2223 34577766655 368997654
No 370
>PHA02633 hypothetical protein; Provisional
Probab=96.40 E-value=0.018 Score=31.38 Aligned_cols=38 Identities=21% Similarity=0.350 Sum_probs=27.1
Q ss_pred eCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEE
Q psy15206 124 TGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE 162 (232)
Q Consensus 124 ~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~ 162 (232)
....|.|-++..+|+|.|.|...+..-. ....+.+.|.
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c-~~~si~l~V~ 53 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYS-DMMKFDLCIC 53 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCee-EEEEEEEEEe
Confidence 3456899999999999999999875433 2333444443
No 371
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=96.34 E-value=0.027 Score=35.30 Aligned_cols=65 Identities=9% Similarity=0.165 Sum_probs=41.7
Q ss_pred CceEeecCCcEEEEeeeccCCC---CeEEEEeCCeeeC---------------CCCcEEee------CCeEEECCCCCCC
Q psy15206 82 QLSVAKEGQSVQLECHAEGHPI---PTISWRRENNAIL---------------PNGQTIFT------GSTLQIPRITKED 137 (232)
Q Consensus 82 ~~~~~~~g~~~~l~C~~~~~~~---~~~~W~~~~~~~~---------------~~~~~~~~------~~~l~i~~~~~~~ 137 (232)
....+..|..++|.|...|... ..+.|++...... ...++... .-.|.|.+++.+|
T Consensus 6 ~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~D 85 (115)
T cd05721 6 SPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQ 85 (115)
T ss_pred CCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHH
Confidence 3455667889999999876432 3588987532210 00111111 1268999999999
Q ss_pred CeEEEEEeE
Q psy15206 138 RGAYYCVAQ 146 (232)
Q Consensus 138 ~g~y~C~~~ 146 (232)
.+.|.|..+
T Consensus 86 Ta~Y~Ca~e 94 (115)
T cd05721 86 TDIYFCKIE 94 (115)
T ss_pred CeEEEEEee
Confidence 999999864
No 372
>PHA03273 envelope glycoprotein C; Provisional
Probab=96.22 E-value=0.044 Score=42.53 Aligned_cols=78 Identities=19% Similarity=0.239 Sum_probs=58.0
Q ss_pred eEEECCCCCCCCeEEEEEeEeCCCC-ceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecCCCC---eEEEeeCC
Q psy15206 127 TLQIPRITKEDRGAYYCVAQNGIGR-GARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHP---ILYWAKDG 202 (232)
Q Consensus 127 ~l~i~~~~~~~~g~y~C~~~~~~~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~---~~~W~~~g 202 (232)
.|.|..++....|.|+-.+.+..+. .....+++...-+|.+.+.+. .+.+|+.....|.+..+.++ .+.|++||
T Consensus 199 ~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~--PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg 276 (486)
T PHA03273 199 PLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVH--PSLKGENYRAVCVVASYFPHSSVKLRWYKNA 276 (486)
T ss_pred ceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence 4899999999999998666553332 133445555567888776655 35689999999998776655 49999999
Q ss_pred EEec
Q psy15206 203 EIVV 206 (232)
Q Consensus 203 ~~~~ 206 (232)
..+.
T Consensus 277 ~~V~ 280 (486)
T PHA03273 277 KEVD 280 (486)
T ss_pred eecc
Confidence 8876
No 373
>PHA03271 envelope glycoprotein C; Provisional
Probab=96.11 E-value=0.45 Score=36.73 Aligned_cols=110 Identities=17% Similarity=0.239 Sum_probs=61.4
Q ss_pred EeecCCcEEEEeeeccCCCC---eEEEEeCCeeeCCCCc---EE---------eeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206 85 VAKEGQSVQLECHAEGHPIP---TISWRRENNAILPNGQ---TI---------FTGSTLQIPRITKEDRGAYYCVAQNGI 149 (232)
Q Consensus 85 ~~~~g~~~~l~C~~~~~~~~---~~~W~~~~~~~~~~~~---~~---------~~~~~l~i~~~~~~~~g~y~C~~~~~~ 149 (232)
.+..|+...-.|.+..+-++ .+.|+.+|........ .. ..-+++.+........-..+|.+.-..
T Consensus 256 PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~r 335 (490)
T PHA03271 256 PVLSGENYKASCIVRHFYPPGSVYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQ 335 (490)
T ss_pred ccccCCCceEEEEeeeecCCCceEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEcc
Confidence 45689999999999874443 4999999877643221 11 111344444443333447899987543
Q ss_pred CCc---eeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecCC-CCeEEEeeCC
Q psy15206 150 GRG---ARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYP-HPILYWAKDG 202 (232)
Q Consensus 150 ~~~---~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~~~W~~~g 202 (232)
... .++.....|..+|.+... ...|+ ..|.+.--| ...++|+-+.
T Consensus 336 d~v~s~rnAaatP~VY~~P~ISv~-----FedG~---AVCtA~CVP~gV~lrWlVgD 384 (490)
T PHA03271 336 GDMISTTNATAIPTVYHHPRISLA-----FKDGY---AICTIECVPSGITVRWLVHD 384 (490)
T ss_pred CCceeeeecccCCccccCCeEEEE-----EeCCE---EEEeccccCCCcEEEEEecC
Confidence 321 123333345556665542 22333 346665544 3369997544
No 374
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=96.09 E-value=0.013 Score=35.57 Aligned_cols=39 Identities=21% Similarity=0.453 Sum_probs=29.1
Q ss_pred eecCCCcceEeecCCeEEE-EEEec-CCCCCeEEEEeCcEe
Q psy15206 15 ILNNSTQLSVAKEGQSVQL-ECHAE-GHPIPTISWRRNFKR 53 (232)
Q Consensus 15 i~~~~~~~~~~~~G~~v~l-~C~~~-~~p~~~~~W~~~~~~ 53 (232)
..+.+.....+.+|+.+.+ .|.+. +.|.++|+|+.+...
T Consensus 3 ~~~~~~~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G 43 (97)
T cd07704 3 VSLSPGPSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYG 43 (97)
T ss_pred cccCCCCeeEeecCcceeEEEEEccCCccCCEeEEeCCCCC
Confidence 3334334556789999999 99987 589999999976444
No 375
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=96.09 E-value=0.016 Score=35.28 Aligned_cols=23 Identities=13% Similarity=0.293 Sum_probs=19.3
Q ss_pred cCeEEEEEEe-ecCCCCeEEEeeC
Q psy15206 179 HHDMDLDCHI-EAYPHPILYWAKD 201 (232)
Q Consensus 179 g~~~~l~C~~-~~~p~~~~~W~~~ 201 (232)
.....+.|.+ .|+|.++|.|+++
T Consensus 15 ~~~~va~C~s~~gkP~a~ItW~~~ 38 (95)
T cd05719 15 EPVTVATCVSANGKPPATISWETT 38 (95)
T ss_pred CccEEEEEECCCCcCCCEEEEEeC
Confidence 3456889997 6899999999997
No 376
>KOG1480|consensus
Probab=96.06 E-value=0.00092 Score=54.49 Aligned_cols=62 Identities=15% Similarity=0.269 Sum_probs=45.1
Q ss_pred ccceeeeeccCeEEEEEEe-ecCCCCeEEEeeCCEEecCCCeE------EEEEeccccCCceEEEEecC
Q psy15206 170 QSTRIGQALHHDMDLDCHI-EAYPHPILYWAKDGEIVVNDEYH------SISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 170 ~~~~~~~~~g~~~~l~C~~-~~~p~~~~~W~~~g~~~~~~~~~------~~~~~~~~~~d~g~Y~C~~~ 231 (232)
.+....+..+..+.+.|.. .+.|...+.|++++..+..+.+. -+....+...|.|+|+|+|.
T Consensus 135 ~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~d~~li~~~arlsd~~nytc~a~ 203 (909)
T KOG1480|consen 135 SPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRASDHNLIISQARLSDSGNYTCEAT 203 (909)
T ss_pred ChhhheecccccccccccCcccchhhhhhccccCCCCCccccchhhhcCCccccchhhhhcccceeeee
Confidence 3444567778888899874 78888899999998776654333 33334567799999999874
No 377
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=95.93 E-value=0.016 Score=37.16 Aligned_cols=52 Identities=12% Similarity=0.325 Sum_probs=28.6
Q ss_pred cCeEEEEEEeecCC-----CCeEEEeeCCEEec--CC--C------------------eEEEEEeccccCCceEEEEecC
Q psy15206 179 HHDMDLDCHIEAYP-----HPILYWAKDGEIVV--ND--E------------------YHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 179 g~~~~l~C~~~~~p-----~~~~~W~~~g~~~~--~~--~------------------~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
.+++.|.|.+.... ...|.|.++|..+. .+ . ...|..+... .-.|+|+|+|+
T Consensus 27 N~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~-a~~GnYTCeVt 105 (130)
T PF08204_consen 27 NDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSD-AVEGNYTCEVT 105 (130)
T ss_dssp -SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHH-HH-EEEEEEEE
T ss_pred CCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchh-ccccceEEEEE
Confidence 67889999985421 22499999987653 11 1 1224444332 33799999984
No 378
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=95.91 E-value=0.044 Score=33.30 Aligned_cols=22 Identities=14% Similarity=0.274 Sum_probs=18.4
Q ss_pred CeEEEEEEe-ecCCCCeEEEeeC
Q psy15206 180 HDMDLDCHI-EAYPHPILYWAKD 201 (232)
Q Consensus 180 ~~~~l~C~~-~~~p~~~~~W~~~ 201 (232)
....+.|.+ .|.|.+.|.|+++
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~ 38 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSST 38 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcC
Confidence 457899986 5788889999997
No 379
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=95.84 E-value=0.075 Score=32.31 Aligned_cols=60 Identities=18% Similarity=0.310 Sum_probs=36.9
Q ss_pred eecCCcEEEEeeecc-CCC--CeEEEEeCCeeeCCCCcEEe---------eCCeEEECCCCCCCCe-EEEEEeEe
Q psy15206 86 AKEGQSVQLECHAEG-HPI--PTISWRRENNAILPNGQTIF---------TGSTLQIPRITKEDRG-AYYCVAQN 147 (232)
Q Consensus 86 ~~~g~~~~l~C~~~~-~~~--~~~~W~~~~~~~~~~~~~~~---------~~~~l~i~~~~~~~~g-~y~C~~~~ 147 (232)
+..|+.+++.|.+.+ .|. ..+.|++....+... .+.. ....+++... .+|.| .|.|.+.-
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~-~f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L 84 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSK-SFLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKL 84 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceeccc-ccccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEE
Confidence 357999999999976 444 458898754433211 1111 1134555543 66666 99999874
No 380
>PHA03042 CD47-like protein; Provisional
Probab=95.71 E-value=0.083 Score=38.12 Aligned_cols=60 Identities=22% Similarity=0.392 Sum_probs=39.6
Q ss_pred CCcEEEEeeeccC-----CCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206 89 GQSVQLECHAEGH-----PIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGR 151 (232)
Q Consensus 89 g~~~~l~C~~~~~-----~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~ 151 (232)
++++.+.|..... ..-.+.|..++..+...... +..+|.+.... .-.|+|+|++.+....
T Consensus 31 N~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t--n~aSL~~~f~~-~l~GNYTCEv~~l~n~ 95 (286)
T PHA03042 31 NKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT--NTSSLKFNFSK-NLSGNYTCEAINKFNK 95 (286)
T ss_pred CceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC--cceEEEEeccc-cCCCceeEEEeecccC
Confidence 7889999998542 34469999998876543332 22455554333 3479999999875443
No 381
>PHA03042 CD47-like protein; Provisional
Probab=95.63 E-value=0.046 Score=39.38 Aligned_cols=52 Identities=12% Similarity=0.357 Sum_probs=33.8
Q ss_pred cCeEEEEEEeecC-----CCCeEEEeeCCEEecC--C-CeEEEEEeccccCCceEEEEecC
Q psy15206 179 HHDMDLDCHIEAY-----PHPILYWAKDGEIVVN--D-EYHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 179 g~~~~l~C~~~~~-----p~~~~~W~~~g~~~~~--~-~~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
.+++.+.|.+..- ....+.|..+|..+.. + +...+..+ -...-.|+|+|+|+
T Consensus 31 N~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~tn~aSL~~~-f~~~l~GNYTCEv~ 90 (286)
T PHA03042 31 NKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNTNTSSLKFN-FSKNLSGNYTCEAI 90 (286)
T ss_pred CceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCCcceEEEEe-ccccCCCceeEEEe
Confidence 6778999998543 2234999999987542 2 22333333 34466899999985
No 382
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=95.62 E-value=0.0083 Score=38.39 Aligned_cols=71 Identities=17% Similarity=0.322 Sum_probs=37.5
Q ss_pred cCCcEEEEeeeccC-----CCCeEEEEeCCeeeCC---CCcEE--------------eeCCeEEECCCCCCCCeEEEEEe
Q psy15206 88 EGQSVQLECHAEGH-----PIPTISWRRENNAILP---NGQTI--------------FTGSTLQIPRITKEDRGAYYCVA 145 (232)
Q Consensus 88 ~g~~~~l~C~~~~~-----~~~~~~W~~~~~~~~~---~~~~~--------------~~~~~l~i~~~~~~~~g~y~C~~ 145 (232)
=++.+.|.|.+... +...+.|..++..+.. ..... ..+.+|.+.....- .|.|+|.+
T Consensus 26 CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCeV 104 (130)
T PF08204_consen 26 CNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCEV 104 (130)
T ss_dssp T-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEEE
T ss_pred cCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEEE
Confidence 37889999998651 2235999998877531 11111 01124666554333 79999999
Q ss_pred EeCCCCceeeEEEEE
Q psy15206 146 QNGIGRGARRKIEVK 160 (232)
Q Consensus 146 ~~~~~~~~~~~~~l~ 160 (232)
...... ....+.|.
T Consensus 105 t~~~~e-ge~~i~Lk 118 (130)
T PF08204_consen 105 TELSRE-GETTIELK 118 (130)
T ss_dssp EETTEE-EEEEEEEE
T ss_pred EecCCC-ceEEEEEE
Confidence 876443 33344443
No 383
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=95.56 E-value=0.52 Score=36.24 Aligned_cols=117 Identities=18% Similarity=0.268 Sum_probs=68.8
Q ss_pred eEeecCCcEEEEeeecc--CCC-CeEEEEeCCeeeCC-----------------CCcEE----------eeCCeEEECCC
Q psy15206 84 SVAKEGQSVQLECHAEG--HPI-PTISWRRENNAILP-----------------NGQTI----------FTGSTLQIPRI 133 (232)
Q Consensus 84 ~~~~~g~~~~l~C~~~~--~~~-~~~~W~~~~~~~~~-----------------~~~~~----------~~~~~l~i~~~ 133 (232)
..+..|..+.+.|...- ... ..+.|+..|-++.+ ...+. ...++|+|.++
T Consensus 274 ~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka 353 (500)
T PHA02914 274 VMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKA 353 (500)
T ss_pred eEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeeeE
Confidence 44556999999998743 222 35889875533211 11111 12468999999
Q ss_pred CCCCCeEEEEEeEeCCCCceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecC--CCCeEEEeeCCEEec
Q psy15206 134 TKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAY--PHPILYWAKDGEIVV 206 (232)
Q Consensus 134 ~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~--p~~~~~W~~~g~~~~ 206 (232)
..+..|.|.|.+..+... ......+.|.....+ . ...+......+.|-+-+. .++.+.|.-+|....
T Consensus 354 ~I~N~GCY~~~a~~g~~~-~ec~~Cl~V~d~V~f--~---W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~~ 422 (500)
T PHA02914 354 HINNAGCYEAQAFMGKFK-EECRHCFKVADHVFF--K---WNTEGDNETKVACYAAQYDMQPFSILWKSNGVSFG 422 (500)
T ss_pred EEEcCCceEEEEecCcch-hhhhhheEeccEEEE--E---EEeccCceEEEEEEEEecccCCceeEEEEccEEec
Confidence 999999999999876322 222223333221111 1 111223456788987444 455799999886643
No 384
>PHA03271 envelope glycoprotein C; Provisional
Probab=94.83 E-value=0.21 Score=38.42 Aligned_cols=79 Identities=16% Similarity=0.321 Sum_probs=51.6
Q ss_pred CeEEECCCCCCCCeEEEEEeEeCCCCc-eeeEEEEEEE-eccEEEeccceeeeeccCeEEEEEEeecCCCC---eEEEee
Q psy15206 126 STLQIPRITKEDRGAYYCVAQNGIGRG-ARRKIEVKVE-FAPIVTVQSTRIGQALHHDMDLDCHIEAYPHP---ILYWAK 200 (232)
Q Consensus 126 ~~l~i~~~~~~~~g~y~C~~~~~~~~~-~~~~~~l~v~-~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~---~~~W~~ 200 (232)
-.+.|.++...+.|.|.-...+..... ..+.+.+.+. -+|.+.+.+. .+-.|+.....|.+..+.++ .+.|++
T Consensus 207 m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~--PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~ 284 (490)
T PHA03271 207 MGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAP--PVLSGENYKASCIVRHFYPPGSVYVSWRQ 284 (490)
T ss_pred eeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCC--ccccCCCceEEEEeeeecCCCceEEEEEe
Confidence 368899999999995543333332221 2223333333 3555666554 35689999999998776665 499999
Q ss_pred CCEEec
Q psy15206 201 DGEIVV 206 (232)
Q Consensus 201 ~g~~~~ 206 (232)
||..+.
T Consensus 285 nG~~V~ 290 (490)
T PHA03271 285 NGNIAT 290 (490)
T ss_pred CCcccc
Confidence 997764
No 385
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=94.60 E-value=0.14 Score=38.60 Aligned_cols=35 Identities=17% Similarity=0.282 Sum_probs=24.0
Q ss_pred eccEEEeccceeeeeccCeEEEEEEeecCCCCe--EEEeeC
Q psy15206 163 FAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPI--LYWAKD 201 (232)
Q Consensus 163 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~--~~W~~~ 201 (232)
.+|.+.+.... ..+ .++|+|.|.|+.+.. +.|.||
T Consensus 202 vpP~V~Vt~k~---~~~-~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 202 VTPTVKVTGEE---LGD-NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CCCceEEeccc---CCC-CceEEEEEEeEeCCccEEEEEec
Confidence 56666553221 122 579999999987664 789999
No 386
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=94.51 E-value=0.49 Score=29.13 Aligned_cols=38 Identities=24% Similarity=0.342 Sum_probs=29.2
Q ss_pred eCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEE
Q psy15206 124 TGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161 (232)
Q Consensus 124 ~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v 161 (232)
.+..|.|..++..|+|.|.-++++..|..-.+.+.+.|
T Consensus 69 enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV 106 (108)
T PF11465_consen 69 ENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV 106 (108)
T ss_dssp TTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred cCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence 45689999999999999999999988886555555544
No 387
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=94.30 E-value=5.8 Score=38.90 Aligned_cols=171 Identities=13% Similarity=0.079 Sum_probs=98.1
Q ss_pred cceEeecCCeEEEEEEecCCCCCeEEEEeCcEe---------------eeeEEEEeeee--------cCceeecCCcEEe
Q psy15206 21 QLSVAKEGQSVQLECHAEGHPIPTISWRRNFKR---------------LGRLHLAIPYT--------SPEAQVDTPPVIL 77 (232)
Q Consensus 21 ~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~---------------~~~~~~~~~~~--------~~~l~v~~~p~~~ 77 (232)
.+..+..|+.|+|.-.....+...++|...+.. .|.|...+.-. ...+.|..+-.-.
T Consensus 1705 S~~~aavn~~V~fs~~lt~GS~vty~W~~gdG~s~~~s~p~~tHtf~~~G~y~VtVta~N~vss~~~s~~V~VqepV~GL 1784 (2740)
T TIGR00864 1705 SDNPAAVNALINLSAELAEGSGLQYRWFLEEGDDLETSEPFMSHSFPSAGLHLVTMKAFNELGSANASEEVDVQEPISGL 1784 (2740)
T ss_pred cCCcccCCCeEEEEEEecCCCCcEEEEEECCCCCcccCCCceEEEccCCceEEEEEEEEccccccceeEEEEEEeccccc
Confidence 344567799999998878778999999984321 12333322111 3333333322111
Q ss_pred cC---CCCce-EeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEe--EeCCCC
Q psy15206 78 NN---SPQLS-VAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVA--QNGIGR 151 (232)
Q Consensus 78 ~~---~~~~~-~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~--~~~~~~ 151 (232)
.. .+... .+..|..+.|.-...........|..++..... ... ......+.|.|.-.+ .|..+.
T Consensus 1785 ~i~~~~~~~~~~~~ag~~v~F~a~vstGsnVsw~W~f~~g~s~~-------gk~---v~~Tf~~aG~ytV~L~AsN~vs~ 1854 (2740)
T TIGR00864 1785 KIRAADAGEQNFFAADSSVCFQGELATGTNVSWCWAIDGGSSKM-------GKH---ACMTFPDAGTFAIRLNASNAVSG 1854 (2740)
T ss_pred eEecCCCCcccceecCcEEEEEEEccCCCeeEEEEEeCCCCccc-------cce---eEEecCCCeEEEEEEEEEcccCc
Confidence 10 11111 233466666666544333446778765432111 000 114566889998775 455544
Q ss_pred ceeeEEEEEEEeccE-EEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCC
Q psy15206 152 GARRKIEVKVEFAPI-VTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDG 202 (232)
Q Consensus 152 ~~~~~~~l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g 202 (232)
......+.|+.++. +...........|+.+++.+.........+.|..++
T Consensus 1855 -~~~s~~~~VQe~I~~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGd 1905 (2740)
T TIGR00864 1855 -KSASREFFAEEPIFGLELKASKKIAAIGEKVEFQILLAAGSAVNFRLQIGG 1905 (2740)
T ss_pred -ceeeeeEEEEEecceEEEecccccccCCCEEEEEEEecCCCceEEEEEeCC
Confidence 45566777777663 344455556778999999998877777889998753
No 388
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=93.98 E-value=0.13 Score=37.00 Aligned_cols=48 Identities=19% Similarity=0.240 Sum_probs=35.3
Q ss_pred CCCeEEEEeCCeeeCCCC-cEE-eeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206 102 PIPTISWRRENNAILPNG-QTI-FTGSTLQIPRITKEDRGAYYCVAQNGI 149 (232)
Q Consensus 102 ~~~~~~W~~~~~~~~~~~-~~~-~~~~~l~i~~~~~~~~g~y~C~~~~~~ 149 (232)
..|.+.|..+++...... ... ...+.|.+.+....++|.|+|......
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCcccCCCCeEEEccCceEEeeccccccCCceEEEEEEEe
Confidence 357899998766554333 322 346789999999999999999987543
No 389
>PHA02633 hypothetical protein; Provisional
Probab=93.97 E-value=0.071 Score=29.09 Aligned_cols=22 Identities=9% Similarity=0.318 Sum_probs=16.9
Q ss_pred CeEEEEEeccccCCceEEEEec
Q psy15206 209 EYHSISNFGTSEGTTGSLQCKV 230 (232)
Q Consensus 209 ~~~~~~~~~~~~~d~g~Y~C~~ 230 (232)
....+.+.++..+|+|.|.|.+
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~ 37 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCIT 37 (63)
T ss_pred ccccEEEeccccccCcEEEEEE
Confidence 4445566677889999999986
No 390
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=93.24 E-value=2.1 Score=30.20 Aligned_cols=118 Identities=16% Similarity=0.199 Sum_probs=61.3
Q ss_pred eEEEEeCCeeeCCCCcE----------EeeCCeEEEC-CCCCCCCeEEEEEeEeCCCCce----eeEEEEEEEeccEEEe
Q psy15206 105 TISWRRENNAILPNGQT----------IFTGSTLQIP-RITKEDRGAYYCVAQNGIGRGA----RRKIEVKVEFAPIVTV 169 (232)
Q Consensus 105 ~~~W~~~~~~~~~~~~~----------~~~~~~l~i~-~~~~~~~g~y~C~~~~~~~~~~----~~~~~l~v~~~p~~~~ 169 (232)
.+.|+.+|..+...... ...-+.|.+. .......-..+|.+.-...... ++.....|..+|.+.+
T Consensus 8 ~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~Vy~~P~vsv 87 (211)
T PF02124_consen 8 RFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSVYPKPRVSV 87 (211)
T ss_pred EEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccccceecCCEEEE
Confidence 58899988866422110 1112355552 2233334578999875433222 2333445566676655
Q ss_pred ccceeeeeccCeEEEEEEeecCCC--CeEEEeeCCEEec-------------CCCeEEEEEeccccCCce--EEEEec
Q psy15206 170 QSTRIGQALHHDMDLDCHIEAYPH--PILYWAKDGEIVV-------------NDEYHSISNFGTSEGTTG--SLQCKV 230 (232)
Q Consensus 170 ~~~~~~~~~g~~~~l~C~~~~~p~--~~~~W~~~g~~~~-------------~~~~~~~~~~~~~~~d~g--~Y~C~~ 230 (232)
.. ..| ...|.+.--|. ..++|.-++.... ..+...+..........| +|+|++
T Consensus 88 ~F-----~~g---~AVC~A~CVP~~~v~l~W~v~d~~~~~~~~~~~~g~C~~~pglvnirs~~pls~~~~~~~YtC~l 157 (211)
T PF02124_consen 88 RF-----EDG---YAVCTARCVPRGNVTLRWSVGDDPSPAPAATEITGVCAEHPGLVNIRSRRPLSDEDGPVEYTCRL 157 (211)
T ss_pred Ee-----cCC---EEEEEcceeeCCCeEEEEEECCccCCCCCceeecCcccCCcceeEeecccCCCccCCceeEEEEE
Confidence 32 122 45577765553 4699997664321 112233333333335556 999986
No 391
>PHA03052 Hypothetical protein; Provisional
Probab=91.23 E-value=0.86 Score=25.37 Aligned_cols=35 Identities=14% Similarity=0.432 Sum_probs=26.6
Q ss_pred ceeeeeccCeEEEEEEee---cCCCCeEEEeeCCEEec
Q psy15206 172 TRIGQALHHDMDLDCHIE---AYPHPILYWAKDGEIVV 206 (232)
Q Consensus 172 ~~~~~~~g~~~~l~C~~~---~~p~~~~~W~~~g~~~~ 206 (232)
..+.+..|..+++.|.+. +...+.+.|.-|+....
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e 42 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYE 42 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEe
Confidence 455677899999999973 23344699999998873
No 392
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=89.04 E-value=3.4 Score=24.77 Aligned_cols=66 Identities=17% Similarity=0.387 Sum_probs=40.0
Q ss_pred CCceEeecCCcEEEEeeeccC-----CCCeEEEEeCCeeeCCCCcEEeeC--CeEEECCCCCCCCeEEEEEeE
Q psy15206 81 PQLSVAKEGQSVQLECHAEGH-----PIPTISWRRENNAILPNGQTIFTG--STLQIPRITKEDRGAYYCVAQ 146 (232)
Q Consensus 81 ~~~~~~~~g~~~~l~C~~~~~-----~~~~~~W~~~~~~~~~~~~~~~~~--~~l~i~~~~~~~~g~y~C~~~ 146 (232)
++...+..|.+++..|..... ....+.|..++..++........+ +++++.+......-.|-|...
T Consensus 10 p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~in~~~SsVT~~~~~~~~~~L~cC~l~ 82 (89)
T PF06328_consen 10 PPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVINDTVSSVTLPNLNPTGATLFCCKLA 82 (89)
T ss_dssp CSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEESTTEEEEEESS--SSEEEEEEEEEC
T ss_pred cCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHcceeCCeEEEEEEccCCCCCceEEEEEEc
Confidence 444567789999999998532 334699999888655544444433 356666666655556666643
No 393
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=88.67 E-value=3.3 Score=24.22 Aligned_cols=38 Identities=21% Similarity=0.341 Sum_probs=26.2
Q ss_pred CeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEe
Q psy15206 104 PTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQN 147 (232)
Q Consensus 104 ~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~ 147 (232)
+.+.|+..+... ......+.......+|.|.+.|.+..
T Consensus 27 ~~~~l~~~~~k~------~~~~~~~~~~~~~~~d~G~w~C~a~~ 64 (80)
T PF05790_consen 27 PSLFLENPGKKS------LETKKLVSTFTPTTEDSGTWVCTASD 64 (80)
T ss_dssp EEEEEECSSCEE------EEESSEEEEESBTCGGSEEEEEEEEE
T ss_pred hhheeeccCccc------cccceEEEEecCCCCCCEEEEEEEcC
Confidence 457776655332 23345567778889999999999953
No 394
>PHA03052 Hypothetical protein; Provisional
Probab=88.14 E-value=1.7 Score=24.25 Aligned_cols=33 Identities=15% Similarity=0.263 Sum_probs=25.2
Q ss_pred CcceEeecCCeEEEEEEec-C--CCCCeEEEEeCcE
Q psy15206 20 TQLSVAKEGQSVQLECHAE-G--HPIPTISWRRNFK 52 (232)
Q Consensus 20 ~~~~~~~~G~~v~l~C~~~-~--~p~~~~~W~~~~~ 52 (232)
|....+.-|..++|.|.+. + ...+.+.|.-++.
T Consensus 4 P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~ 39 (69)
T PHA03052 4 PEGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGM 39 (69)
T ss_pred CccEEEEccCCceEeEEEEecCCCcceEEEEEeCCc
Confidence 4567788999999999997 3 2366788988554
No 395
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=87.69 E-value=2 Score=32.66 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=16.8
Q ss_pred cEEEEeeeccCCC--CeEEEEeC
Q psy15206 91 SVQLECHAEGHPI--PTISWRRE 111 (232)
Q Consensus 91 ~~~l~C~~~~~~~--~~~~W~~~ 111 (232)
.+.|.|.+.|.-+ ..+.|.++
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 5799999999444 35889998
No 396
>KOG4597|consensus
Probab=87.14 E-value=1.4 Score=34.82 Aligned_cols=70 Identities=17% Similarity=0.259 Sum_probs=50.2
Q ss_pred CceEeecCCcEEEEeeeccCCCCeEEEEeC---CeeeCCCCc-E-----EeeCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206 82 QLSVAKEGQSVQLECHAEGHPIPTISWRRE---NNAILPNGQ-T-----IFTGSTLQIPRITKEDRGAYYCVAQNGIGR 151 (232)
Q Consensus 82 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~---~~~~~~~~~-~-----~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~ 151 (232)
..-.+..+++.++.|-..|.+.+.+.|.+. +..+..... . ..+...|.|-+....|.|.|+|.+.+..|.
T Consensus 204 a~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~ 282 (560)
T KOG4597|consen 204 AEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGF 282 (560)
T ss_pred chhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccccce
Confidence 334566789999999999999999999753 222211111 1 112346899999999999999999988775
No 397
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=86.52 E-value=5.2 Score=24.09 Aligned_cols=79 Identities=19% Similarity=0.265 Sum_probs=45.4
Q ss_pred CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeC--CCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEE
Q psy15206 80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAIL--PNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKI 157 (232)
Q Consensus 80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~--~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~ 157 (232)
.|....+..|.++.+.|+..-..+..+.|.-.-.... ..... ..+.+.++.. ...-.|.+.-. |....+..
T Consensus 9 ~P~~~vV~~G~Sv~VNCStsC~~p~~~GLET~L~k~~~~~g~~W----~~f~LsnV~~--ds~~~C~~~C~-g~Q~~~~~ 81 (91)
T PF03921_consen 9 SPEEPVVPPGGSVWVNCSTSCPQPEKIGLETSLSKTELDSGPQW----KAFQLSNVTE--DSSPLCFFNCS-GEQSSASA 81 (91)
T ss_dssp ESSEEEEETTEEEEEEEEESSSS-SEEEEESSSEEEEEEEETTE----EEEEEEEE-S--CEEEEEEEEET-TEEEEEEE
T ss_pred ECCccEECCCCCEEEEEcCCCCCCCcceEEEecCCcccCCCCcE----EEEEEEcccc--CCeEEEEEEcC-CeEEEeEE
Confidence 4666788899999999998654444456643322110 00000 1355667775 35678998865 33355677
Q ss_pred EEEEEecc
Q psy15206 158 EVKVEFAP 165 (232)
Q Consensus 158 ~l~v~~~p 165 (232)
.+.|+.+|
T Consensus 82 ~ItVY~~P 89 (91)
T PF03921_consen 82 NITVYKPP 89 (91)
T ss_dssp EEEEEB--
T ss_pred eeEEeCCC
Confidence 77777665
No 398
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=84.98 E-value=4.7 Score=23.61 Aligned_cols=37 Identities=14% Similarity=0.306 Sum_probs=23.0
Q ss_pred CCeEEEeeCCEEecCCCeEEEEEeccccCCceEEEEec
Q psy15206 193 HPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQCKV 230 (232)
Q Consensus 193 ~~~~~W~~~g~~~~~~~~~~~~~~~~~~~d~g~Y~C~~ 230 (232)
.+...|.-.+............. ..+..|+|...|.|
T Consensus 26 ~~~~~l~~~~~k~~~~~~~~~~~-~~~~~d~G~w~C~a 62 (80)
T PF05790_consen 26 KPSLFLENPGKKSLETKKLVSTF-TPTTEDSGTWVCTA 62 (80)
T ss_dssp CEEEEEECSSCEEEEESSEEEEE-SBTCGGSEEEEEEE
T ss_pred ChhheeeccCccccccceEEEEe-cCCCCCCEEEEEEE
Confidence 34577776665444333333333 34568999999998
No 399
>KOG4597|consensus
Probab=84.04 E-value=1.2 Score=35.21 Aligned_cols=61 Identities=10% Similarity=0.091 Sum_probs=42.2
Q ss_pred cceeeeeccCeEEEEEEeecCCCCeEEEee---CCEEec-----------CCCeEEEEEeccccCCceEEEEecC
Q psy15206 171 STRIGQALHHDMDLDCHIEAYPHPILYWAK---DGEIVV-----------NDEYHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 171 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~---~g~~~~-----------~~~~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
+....+..+++..++|.+.|++.+.|.|.+ |+..+. ..+.-.+-+-+.-..|+|.|+|.+.
T Consensus 203 pa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~r 277 (560)
T KOG4597|consen 203 PAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSAR 277 (560)
T ss_pred cchhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccc
Confidence 334456678999999999999999999975 222221 1122344555566699999999863
No 400
>PHA02982 hypothetical protein; Provisional
Probab=78.28 E-value=4.6 Score=28.41 Aligned_cols=57 Identities=11% Similarity=0.322 Sum_probs=34.4
Q ss_pred eeeccCeEEEEEEeecCC-CCeEEEeeCCE-Eec---------------------------CCCeEEEEEeccccCCceE
Q psy15206 175 GQALHHDMDLDCHIEAYP-HPILYWAKDGE-IVV---------------------------NDEYHSISNFGTSEGTTGS 225 (232)
Q Consensus 175 ~~~~g~~~~l~C~~~~~p-~~~~~W~~~g~-~~~---------------------------~~~~~~~~~~~~~~~d~g~ 225 (232)
....++++.|.|...... .....|+.+.. .+. +..+-.|.+..+.-+..|-
T Consensus 35 ~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~GC 114 (251)
T PHA02982 35 NATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLGC 114 (251)
T ss_pred hccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCCc
Confidence 345688899999843222 22478987532 222 1122345555666689999
Q ss_pred EEEecC
Q psy15206 226 LQCKVP 231 (232)
Q Consensus 226 Y~C~~~ 231 (232)
|.|++.
T Consensus 115 Ytc~~k 120 (251)
T PHA02982 115 FTCEAK 120 (251)
T ss_pred eEEEEe
Confidence 999873
No 401
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=77.96 E-value=12 Score=22.37 Aligned_cols=37 Identities=14% Similarity=0.304 Sum_probs=25.0
Q ss_pred cceeeeeccCeEEEEEEeecC-----CCCeEEEeeCCEEecC
Q psy15206 171 STRIGQALHHDMDLDCHIEAY-----PHPILYWAKDGEIVVN 207 (232)
Q Consensus 171 ~~~~~~~~g~~~~l~C~~~~~-----p~~~~~W~~~g~~~~~ 207 (232)
+....+..|..++..|..... ....+.|.-|+..+..
T Consensus 10 p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~ 51 (89)
T PF06328_consen 10 PPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPG 51 (89)
T ss_dssp CSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTC
T ss_pred cCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECCh
Confidence 444567789999999997422 3446999988875543
No 402
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=77.69 E-value=14 Score=22.94 Aligned_cols=23 Identities=13% Similarity=0.040 Sum_probs=17.5
Q ss_pred CeEEEEEeccccCCceEEEEecC
Q psy15206 209 EYHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 209 ~~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
.++.|.++.+...|+|.|..+++
T Consensus 69 enlaLlIkaAq~qDSG~Y~LEvT 91 (108)
T PF11465_consen 69 ENLALLIKAAQPQDSGLYCLEVT 91 (108)
T ss_dssp TTTEEEESS-SGGG-EEEEEEEE
T ss_pred cCceEEEeecCcccCceEEEEEE
Confidence 45688888899999999998875
No 403
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=76.27 E-value=9.4 Score=21.28 Aligned_cols=52 Identities=6% Similarity=0.040 Sum_probs=31.3
Q ss_pred eeeccCeEEEEEEeecCCCCeEEEeeCC-EEecCCCeEEEEEeccccCCceEEEEecC
Q psy15206 175 GQALHHDMDLDCHIEAYPHPILYWAKDG-EIVVNDEYHSISNFGTSEGTTGSLQCKVP 231 (232)
Q Consensus 175 ~~~~g~~~~l~C~~~~~p~~~~~W~~~g-~~~~~~~~~~~~~~~~~~~d~g~Y~C~~~ 231 (232)
.+..|+.+.|...........+.|..++ .....+..+.... ...|.|.-.++
T Consensus 7 ~~~~g~~v~f~~~~~~g~~~~y~W~fgd~~~~~~~~~~t~ty-----~~~G~y~V~lt 59 (69)
T PF00801_consen 7 YVPTGQPVTFTASSSDGSPVTYSWDFGDNGTVSTGSSVTHTY-----SSPGTYTVTLT 59 (69)
T ss_dssp CEBTTSEEEEEETTTTSSECEEEEE-SSESEEECSSEEEEEE-----SSSEEEEEEEE
T ss_pred EEcCCCEEEEEEEccCCCCeEEEEEECCCCccccCCCEEEEc-----CCCeEEEEEEE
Confidence 4567888888888733334479999888 4444444444333 34577776554
No 404
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=75.08 E-value=9.2 Score=23.21 Aligned_cols=58 Identities=14% Similarity=0.251 Sum_probs=32.0
Q ss_pred EEEEee-eccCCCCeEEEEeCCeeeCCC------CcEEeeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206 92 VQLECH-AEGHPIPTISWRRENNAILPN------GQTIFTGSTLQIPRITKEDRGAYYCVAQNGI 149 (232)
Q Consensus 92 ~~l~C~-~~~~~~~~~~W~~~~~~~~~~------~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~ 149 (232)
+.-.|. +.|.|+..|.|..+-...... .......+.+.+......|....+|.+.+..
T Consensus 23 ~VA~CiSa~GrPpa~ItW~t~l~G~~etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~ 87 (98)
T cd05890 23 LVATCVSANGKPPSVVRWDTRLKGEAEFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRN 87 (98)
T ss_pred EEEEEEcCCCcCCcEeEEEccCCCceeeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEecc
Confidence 345788 567888899998543221110 0011112234444555556668899988753
No 405
>KOG1026|consensus
Probab=70.40 E-value=7.8 Score=33.18 Aligned_cols=32 Identities=31% Similarity=0.585 Sum_probs=26.7
Q ss_pred eEeecCCcEEEEeeeccCCCCeEEEEeCCeee
Q psy15206 84 SVAKEGQSVQLECHAEGHPIPTISWRRENNAI 115 (232)
Q Consensus 84 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~ 115 (232)
..+..+..+.+.|...+.+.+...|+.++...
T Consensus 202 ~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~ 233 (774)
T KOG1026|consen 202 LTVEEGSSITLKCSQAGIPVPCHYWFPNCLAS 233 (774)
T ss_pred hhhcccchheeeeecccCCCcceeeecccccc
Confidence 45667889999999999999999999876554
No 406
>KOG0613|consensus
Probab=68.82 E-value=13 Score=33.67 Aligned_cols=58 Identities=7% Similarity=0.007 Sum_probs=36.6
Q ss_pred eeeeeccCeEEEEEEeecCCCCe-EEEeeCCEEecCC-----------CeEEEEEeccccCCceEEEEec
Q psy15206 173 RIGQALHHDMDLDCHIEAYPHPI-LYWAKDGEIVVND-----------EYHSISNFGTSEGTTGSLQCKV 230 (232)
Q Consensus 173 ~~~~~~g~~~~l~C~~~~~p~~~-~~W~~~g~~~~~~-----------~~~~~~~~~~~~~d~g~Y~C~~ 230 (232)
......+..+.+.|...+.+.++ +.|++++.....+ ....+.+..+...+.+.|.|.|
T Consensus 343 ~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a 412 (1205)
T KOG0613|consen 343 SVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPA 412 (1205)
T ss_pred eeccccCcceeecccccCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccce
Confidence 34455677899999999998887 9999976443321 1223333344446666666655
No 407
>KOG0613|consensus
Probab=66.85 E-value=11 Score=34.12 Aligned_cols=143 Identities=14% Similarity=0.026 Sum_probs=81.6
Q ss_pred eEeecCCcEEEEeeeccCCCCe-EEEEeCCeeeCCCCc------EEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeE
Q psy15206 84 SVAKEGQSVQLECHAEGHPIPT-ISWRRENNAILPNGQ------TIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRK 156 (232)
Q Consensus 84 ~~~~~g~~~~l~C~~~~~~~~~-~~W~~~~~~~~~~~~------~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~ 156 (232)
.....+..+.+.|...+.+.+. +.|+........... .......+.+..+...+.+.|.|.+.|..+......
T Consensus 344 v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~ 423 (1205)
T KOG0613|consen 344 VTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIA 423 (1205)
T ss_pred eccccCcceeecccccCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcccccc
Confidence 4455577789999988887776 999987654433221 111234677888899999999999999877633222
Q ss_pred EEEEEEe----ccEEEeccceeeeec--cCeEEEEEEeecCCCC--eEEEeeCCEEec-------CCCeEEEEEeccccC
Q psy15206 157 IEVKVEF----APIVTVQSTRIGQAL--HHDMDLDCHIEAYPHP--ILYWAKDGEIVV-------NDEYHSISNFGTSEG 221 (232)
Q Consensus 157 ~~l~v~~----~p~~~~~~~~~~~~~--g~~~~l~C~~~~~p~~--~~~W~~~g~~~~-------~~~~~~~~~~~~~~~ 221 (232)
....... .|............. -..+.+.|...+.+-+ .++|++++...+ ......+...-....
T Consensus 424 ~~~vs~~~~gt~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~~~~~~~s~~s~~l~r~~~tslLlk~~~~~ 503 (1205)
T KOG0613|consen 424 ESTVSEEMPGTQPPKFKKDVSTTDLLTVKDEITVRTPDSSTSMPMTTVTTIKDGLPLSDRSVTLTRDVLTSLLLKVASLS 503 (1205)
T ss_pred hhhcccccCCCCCccccccccccccccCCcccccccCCCCccccceeEeeccCCcccccccccccccchhhheeeccCCC
Confidence 2222221 122111111122223 3677888887776644 466777654322 222334444444446
Q ss_pred CceEE
Q psy15206 222 TTGSL 226 (232)
Q Consensus 222 d~g~Y 226 (232)
|.|.|
T Consensus 504 ~~A~~ 508 (1205)
T KOG0613|consen 504 DGAQY 508 (1205)
T ss_pred ccchh
Confidence 65555
No 408
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=65.72 E-value=26 Score=20.79 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=17.7
Q ss_pred eEEEEEEeecCCCCeEEEeeCCEEec
Q psy15206 181 DMDLDCHIEAYPHPILYWAKDGEIVV 206 (232)
Q Consensus 181 ~~~l~C~~~~~p~~~~~W~~~g~~~~ 206 (232)
...|...+.+. ...+.|+-||..+.
T Consensus 31 ~~~l~l~a~~~-~~~~~W~vdg~~~g 55 (89)
T PF06832_consen 31 RQPLVLKAAGG-RGPVYWFVDGEPLG 55 (89)
T ss_pred cceEEEEEeCC-CCcEEEEECCEEcc
Confidence 34555555555 44999999999883
No 409
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=64.91 E-value=69 Score=25.40 Aligned_cols=40 Identities=23% Similarity=0.361 Sum_probs=28.7
Q ss_pred eEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEEeccEEE
Q psy15206 127 TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVT 168 (232)
Q Consensus 127 ~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~ 168 (232)
++.+.++..+|.|.|.|...-... ......+.+...|.+.
T Consensus 82 sf~~~Nvs~sdEGrYrCIFYLn~~--EtyrH~I~vrVmPKId 121 (500)
T PHA02914 82 SFIEENIGEHEDGDFKCIFYLGDN--ESHKHEILVRKAPKID 121 (500)
T ss_pred EEEecCcccccCCcEEEEEEeCCc--eeEEEEEEEEEcccee
Confidence 678889999999999999875432 3344555666666654
No 410
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=64.68 E-value=22 Score=21.48 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=18.2
Q ss_pred CcceEeecCCeEEEEEEecC
Q psy15206 20 TQLSVAKEGQSVQLECHAEG 39 (232)
Q Consensus 20 ~~~~~~~~G~~v~l~C~~~~ 39 (232)
|+..+|..|+++.+.|..+-
T Consensus 10 P~~~vV~~G~Sv~VNCStsC 29 (91)
T PF03921_consen 10 PEEPVVPPGGSVWVNCSTSC 29 (91)
T ss_dssp SSEEEEETTEEEEEEEEESS
T ss_pred CCccEECCCCCEEEEEcCCC
Confidence 78889999999999999874
No 411
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=64.32 E-value=13 Score=20.65 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=14.9
Q ss_pred EEEEEeecCCCCeEEEeeCCEEec
Q psy15206 183 DLDCHIEAYPHPILYWAKDGEIVV 206 (232)
Q Consensus 183 ~l~C~~~~~p~~~~~W~~~g~~~~ 206 (232)
+|+|..... --++|+-||..+-
T Consensus 2 tltC~s~~s--LPiswYcN~TRLl 23 (71)
T PF11049_consen 2 TLTCPSNAS--LPISWYCNGTRLL 23 (71)
T ss_pred ceecCCCCC--CcccEEECCceee
Confidence 467766443 2488999987664
No 412
>PHA03189 UL14 tegument protein; Provisional
Probab=61.63 E-value=25 Score=26.49 Aligned_cols=13 Identities=31% Similarity=0.618 Sum_probs=10.4
Q ss_pred cccCCceEEEEec
Q psy15206 218 TSEGTTGSLQCKV 230 (232)
Q Consensus 218 ~~~~d~g~Y~C~~ 230 (232)
+..+.+|.|.|..
T Consensus 140 v~t~taG~Y~CvL 152 (348)
T PHA03189 140 VSTSTAGMYECVL 152 (348)
T ss_pred EEecccceEEEEe
Confidence 4558889999975
No 413
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=60.47 E-value=1.1e+02 Score=26.30 Aligned_cols=197 Identities=14% Similarity=0.153 Sum_probs=106.2
Q ss_pred EeecCCeEEEEEEecCCCCCeEEEEeCcE------------------eeeeEEEEee---------ee---cCceeecC-
Q psy15206 24 VAKEGQSVQLECHAEGHPIPTISWRRNFK------------------RLGRLHLAIP---------YT---SPEAQVDT- 72 (232)
Q Consensus 24 ~~~~G~~v~l~C~~~~~p~~~~~W~~~~~------------------~~~~~~~~~~---------~~---~~~l~v~~- 72 (232)
....|+.+.|...+.|.-...+++...+. ..|.|.+.+. |. .+...+..
T Consensus 301 ~ql~g~~I~ika~a~GG~~llYrf~I~G~~~e~~~Y~~~n~~~w~P~~~G~Y~I~v~VKDk~S~~eyD~~~~v~f~i~~~ 380 (667)
T PRK14081 301 PQLTDTDIELKAVAEGGKELLYRFIIKGKESEDSGYIRNNIYTWKPKIAGKYSITLWVKDISSKGEYEDKSSIDYTIEEK 380 (667)
T ss_pred CeecCceEEEEEEecCCCceEEEEEECCcEEeeccccccceEEEeeCCCceEEEEEEEEcCcCcccccceEEEEEEEccc
Confidence 34689999999999875555555333221 2245655551 11 33333332
Q ss_pred --CcEEe-c-CCCCceEeecCCcEEEEeeeccCCCCeEE-EE-eCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeE
Q psy15206 73 --PPVIL-N-NSPQLSVAKEGQSVQLECHAEGHPIPTIS-WR-RENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQ 146 (232)
Q Consensus 73 --~p~~~-~-~~~~~~~~~~g~~~~l~C~~~~~~~~~~~-W~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~ 146 (232)
.|..+ . ..+.......|+.+.+.+.+.+.....+. |. .+|..+.. ..+ ..+..+. ..+.-+|.|+-.+.
T Consensus 381 ~~~p~~I~~vl~d~~~~~lvG~~i~i~v~a~gg~~~lY~f~ik~ng~~ve~-~~Y-~~~~~~~---f~P~~~G~Y~IeV~ 455 (667)
T PRK14081 381 SKEPIKIEDVILDKGKHILKGEEIKIRVIAEGGTNLRYSFIIKKDGKEEEK-IDY-GKNNWVN---FIPEEKGNYELEVR 455 (667)
T ss_pred CCCCeEEEEEEECCCCceEeCCeEEEEEEecCCCeEEEEEEEEECCEEEEE-eec-ccccEEE---EEECCCeeEEEEEE
Confidence 23211 1 11222345579999999999876554433 33 34544321 111 1122222 33467799988865
Q ss_pred eC--CC---CceeeEEEEEEEe-ccE-EE--eccceeeeeccCeEEEEEEeecCCCCe--EEEeeCCEEec-----CCCe
Q psy15206 147 NG--IG---RGARRKIEVKVEF-API-VT--VQSTRIGQALHHDMDLDCHIEAYPHPI--LYWAKDGEIVV-----NDEY 210 (232)
Q Consensus 147 ~~--~~---~~~~~~~~l~v~~-~p~-~~--~~~~~~~~~~g~~~~l~C~~~~~p~~~--~~W~~~g~~~~-----~~~~ 210 (232)
-. .. -...+.+.+.|.. .|. +. +.+.......|+.+++.|.+++..... +.-..+|.-+. ....
T Consensus 456 vKdk~S~~~yD~~k~v~l~V~e~~P~~i~~il~~~~~~~~vg~~i~~~~~~~~~k~v~y~y~~~~NG~~v~~t~Ys~~~~ 535 (667)
T PRK14081 456 VKDKYSDKEYDAHTIVYIKVHEYIPAEIDYILLPVKEYYLVGDDIEIEVIIQNTKDVLIKYILKINGHKVEETDYIKNKK 535 (667)
T ss_pred EecccCchhcccceEEEEEEeccCceeeeeEEecccccEEeCCEEEEEEEEeCCCeEEEEEEEEECCEEEEEeeccccce
Confidence 32 11 1235566777764 453 22 234444567899999999998765443 44455676553 2334
Q ss_pred EEEEEeccccCCceEEEEec
Q psy15206 211 HSISNFGTSEGTTGSLQCKV 230 (232)
Q Consensus 211 ~~~~~~~~~~~d~g~Y~C~~ 230 (232)
+.+.+ .-+|.|+-.|
T Consensus 536 ysf~P-----~~~GkY~I~V 550 (667)
T PRK14081 536 YKFIP-----KCSGKYTIEV 550 (667)
T ss_pred EEEee-----cCCceEEEEE
Confidence 44443 3447776544
No 414
>PF15096 G6B: G6B family
Probab=53.77 E-value=35 Score=23.58 Aligned_cols=22 Identities=18% Similarity=0.289 Sum_probs=14.5
Q ss_pred eeccCeEEEEEEeecCCCCeEEE
Q psy15206 176 QALHHDMDLDCHIEAYPHPILYW 198 (232)
Q Consensus 176 ~~~g~~~~l~C~~~~~p~~~~~W 198 (232)
-..|+.|+|+|.....| ..+.|
T Consensus 8 GrPGDRVnlSCvGVs~p-~RWaW 29 (224)
T PF15096_consen 8 GRPGDRVNLSCVGVSHP-IRWAW 29 (224)
T ss_pred CCCCCeeeeeeccCCCc-ceeee
Confidence 34688899999875553 24555
No 415
>PHA03189 UL14 tegument protein; Provisional
Probab=52.82 E-value=1e+02 Score=23.48 Aligned_cols=26 Identities=23% Similarity=0.436 Sum_probs=17.7
Q ss_pred CCCCCCCeEEEEEeEeCCCCceeeEE
Q psy15206 132 RITKEDRGAYYCVAQNGIGRGARRKI 157 (232)
Q Consensus 132 ~~~~~~~g~y~C~~~~~~~~~~~~~~ 157 (232)
++..+.+|.|.|...|.........+
T Consensus 139 ~v~t~taG~Y~CvLrN~tHglv~~rf 164 (348)
T PHA03189 139 RVSTSTAGMYECVLRNETHGLVLQRF 164 (348)
T ss_pred EEEecccceEEEEeccccceeeeEEe
Confidence 46667789999999986544333333
No 416
>PHA03286 envelope glycoprotein E; Provisional
Probab=48.06 E-value=1.5e+02 Score=24.06 Aligned_cols=76 Identities=14% Similarity=0.153 Sum_probs=47.4
Q ss_pred CCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEEe-----ccEEE--ecc------------ceeeeeccCeEEEE
Q psy15206 125 GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEF-----APIVT--VQS------------TRIGQALHHDMDLD 185 (232)
Q Consensus 125 ~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~-----~p~~~--~~~------------~~~~~~~g~~~~l~ 185 (232)
.+.|.|.++...++|.|+-...+..+......+.+.|.. +|.+. ..| ...-...|+++.+.
T Consensus 126 ~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~vS 205 (492)
T PHA03286 126 GKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDAS 205 (492)
T ss_pred CCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEEE
Confidence 457999999999999999999887666555556666631 11111 111 11223468888777
Q ss_pred EEee-c-C---CCCeEEEee
Q psy15206 186 CHIE-A-Y---PHPILYWAK 200 (232)
Q Consensus 186 C~~~-~-~---p~~~~~W~~ 200 (232)
-... . . ...++.|+.
T Consensus 206 v~l~~~~~d~~Fsl~i~W~y 225 (492)
T PHA03286 206 VTAHLTNWAGAFSLEFRVLF 225 (492)
T ss_pred EEEeecccCCCceEEEEEEE
Confidence 6654 1 1 123699975
No 417
>PHA02935 Hypothetical protein; Provisional
Probab=45.99 E-value=1e+02 Score=21.64 Aligned_cols=85 Identities=16% Similarity=0.257 Sum_probs=41.3
Q ss_pred eEEEEeCCeeeCCCCcEE-------------eeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEEeccEEE-ec
Q psy15206 105 TISWRRENNAILPNGQTI-------------FTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVT-VQ 170 (232)
Q Consensus 105 ~~~W~~~~~~~~~~~~~~-------------~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~-~~ 170 (232)
.-.|+.+++.+....... ..-.-|.|..++.+|+|.|.-...-..|-.......+.|. ..+. ..
T Consensus 68 ytswyyndkvialatedrtsgyissfikrvnisltclnisslryedsgsykgvshlkdgvivtttmnisvk--aniidlt 145 (349)
T PHA02935 68 YTSWYYNDKVIALATEDRTSGYISSFIKRVNISLTCLNISSLRYEDSGSYKGVSHLKDGVIVTTTMNISVK--ANIIDLT 145 (349)
T ss_pred cceeeecCEEEEEeeccccccHHHHHHhhheeeEEEeeccceeeccCCcccCchhhcCceEEEEEEEEEEE--eeeEecc
Confidence 467998887653221110 1112356777888999998765443333222222222222 1111 11
Q ss_pred cceeee-eccCeEEEEEEeecC
Q psy15206 171 STRIGQ-ALHHDMDLDCHIEAY 191 (232)
Q Consensus 171 ~~~~~~-~~g~~~~l~C~~~~~ 191 (232)
...... ..-..+.+.|+.+++
T Consensus 146 grvryltrnycevkirceiksf 167 (349)
T PHA02935 146 GRVRYLTRNYCEVKIRCEIKSF 167 (349)
T ss_pred ceeeeeccccEEEEEEEEEeee
Confidence 111111 123568889987654
No 418
>KOG0200|consensus
Probab=44.74 E-value=1.1e+02 Score=26.06 Aligned_cols=98 Identities=20% Similarity=0.340 Sum_probs=52.8
Q ss_pred CCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEE-EEe-ccEEE-eccceeeeeccCeEEEEEEeecCCCCeEEEeeC
Q psy15206 125 GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVK-VEF-APIVT-VQSTRIGQALHHDMDLDCHIEAYPHPILYWAKD 201 (232)
Q Consensus 125 ~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~-v~~-~p~~~-~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~ 201 (232)
...+.+..+...+.|.|+|.+.+ .. ..+.+. ... .+... ..+.......+....+ +...+.+.+.|...
T Consensus 12 ~~~~~~~~~~~~~~~~y~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 83 (609)
T KOG0200|consen 12 HWFLIIDSVVPGDKGFYTCLVSN--IN---LIISLDDIVIHRPILLAGENANPNTVVTVGVPL---AFSIPQPFIKWGTN 83 (609)
T ss_pred cceEEEEEEEecCCccEEEEEec--Cc---eeeEeecccCcccccccCCCCCcceeeccccee---eeecCCCcceeeee
Confidence 44677788888999999999998 11 111111 111 11111 1122233344555555 33333556667654
Q ss_pred CEEe-----c-------------------CCCeEEEEEeccccCCceEEEEec
Q psy15206 202 GEIV-----V-------------------NDEYHSISNFGTSEGTTGSLQCKV 230 (232)
Q Consensus 202 g~~~-----~-------------------~~~~~~~~~~~~~~~d~g~Y~C~~ 230 (232)
.... . ......+...+....+.|.|.|..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~ 136 (609)
T KOG0200|consen 84 LEIECEDGLFEYKTKKTLSFVEIEYNRLVDGTFESGLIYNVSLTEAGEYLCWT 136 (609)
T ss_pred ecccccccCcchhheeeeeeeeccccccccCceEeeeeeccChhhcceeeccC
Confidence 3210 0 124456666777888889998865
No 419
>PHA03283 envelope glycoprotein E; Provisional
Probab=43.15 E-value=1.9e+02 Score=23.96 Aligned_cols=38 Identities=26% Similarity=0.117 Sum_probs=29.0
Q ss_pred CCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEEe
Q psy15206 125 GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEF 163 (232)
Q Consensus 125 ~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~ 163 (232)
.+.|.|.+++.+++|.|+-...+..+ .....+.+.|..
T Consensus 133 ~~~l~I~~at~~~aGVYtly~r~d~~-~~~~vflvtVk~ 170 (542)
T PHA03283 133 RSVLQIQRATPNIAGVYTLHVSSDGM-MKHSVFFVTVKK 170 (542)
T ss_pred CCeeEEEecccccCeEEEEEecCCCc-eEEEEEEEEecC
Confidence 46799999999999999999887554 355556666654
No 420
>PHA03240 envelope glycoprotein M; Provisional
Probab=41.98 E-value=66 Score=22.91 Aligned_cols=21 Identities=33% Similarity=0.434 Sum_probs=17.1
Q ss_pred eCCeEEECCCCCCCCeEEEEE
Q psy15206 124 TGSTLQIPRITKEDRGAYYCV 144 (232)
Q Consensus 124 ~~~~l~i~~~~~~~~g~y~C~ 144 (232)
.+++|.|.++..+|.|+|.-.
T Consensus 103 ~NstL~i~~vn~sd~~nYcr~ 123 (258)
T PHA03240 103 HNSTLIIAHLNLSDAGEYCRK 123 (258)
T ss_pred ccceEEEEEEeecCcchhhhc
Confidence 467899999999999998433
No 421
>PF05955 Herpes_gp2: Equine herpesvirus glycoprotein gp2; InterPro: IPR010278 This entry consists of a number of glycoprotein Gp2 sequences mainly found from equine herpesviruses [].; GO: 0016032 viral reproduction, 0016021 integral to membrane
Probab=41.09 E-value=1.2e+02 Score=20.98 Aligned_cols=50 Identities=12% Similarity=0.295 Sum_probs=29.0
Q ss_pred EEEEEee-cCCCCeEEEeeCCEEecCCCeE----------------EEEEeccccCCceEEEEecCC
Q psy15206 183 DLDCHIE-AYPHPILYWAKDGEIVVNDEYH----------------SISNFGTSEGTTGSLQCKVPV 232 (232)
Q Consensus 183 ~l~C~~~-~~p~~~~~W~~~g~~~~~~~~~----------------~~~~~~~~~~d~g~Y~C~~~~ 232 (232)
...|.+. -..+|.|+|.-....+.+++.. .+.+...+..+.-.|.|.+.+
T Consensus 111 rAvCitseL~s~PtitWsVgs~rl~n~gftqtwy~iqPGvCgilrS~v~~~R~~G~~~~~y~c~~~~ 177 (226)
T PF05955_consen 111 RAVCITSELVSQPTITWSVGSDRLRNDGFTQTWYGIQPGVCGILRSEVRIPRAEGRDNVDYLCEIRA 177 (226)
T ss_pred EEEEeeccccCCCeEEEEeccceeecCCccceeecccCcceeeEeeeeecccCCCCCcccEEecccc
Confidence 4457653 3446789998765555544322 122333444666779998753
No 422
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=41.04 E-value=35 Score=27.54 Aligned_cols=38 Identities=26% Similarity=0.342 Sum_probs=0.0
Q ss_pred CCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEE
Q psy15206 125 GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE 162 (232)
Q Consensus 125 ~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~ 162 (232)
.+.|.|.+++.+|+|.|+-...+..+......+.+.|.
T Consensus 88 ~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~ 125 (439)
T PF02480_consen 88 KGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVK 125 (439)
T ss_dssp --------------------------------------
T ss_pred CCceEEeccccccCeeEEEEecCCCCceEEEEEEEEEc
Confidence 45799999999999999999886555434444555544
No 423
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=39.88 E-value=34 Score=23.20 Aligned_cols=28 Identities=7% Similarity=-0.054 Sum_probs=22.5
Q ss_pred ecCCCeEEEEEeccccCCceEEEEecCC
Q psy15206 205 VVNDEYHSISNFGTSEGTTGSLQCKVPV 232 (232)
Q Consensus 205 ~~~~~~~~~~~~~~~~~d~g~Y~C~~~~ 232 (232)
...+....+.+.+.+.+|+|.|.-++.+
T Consensus 118 ~~~~~~~lL~i~~p~~~dsG~Y~lRV~l 145 (161)
T PF01688_consen 118 TSPENGVLLRIRNPRPEDSGIYYLRVWL 145 (161)
T ss_pred cCCCcceEEEeCCCCcccceEEEEEEEE
Confidence 3455677888899999999999988754
No 424
>PHA03112 IL-18 binding protein; Provisional
Probab=38.75 E-value=52 Score=21.72 Aligned_cols=29 Identities=28% Similarity=0.391 Sum_probs=21.8
Q ss_pred eEeecCCeEEEEEEecCC-CC-CeEEEEeCc
Q psy15206 23 SVAKEGQSVQLECHAEGH-PI-PTISWRRNF 51 (232)
Q Consensus 23 ~~~~~G~~v~l~C~~~~~-p~-~~~~W~~~~ 51 (232)
+...+|++++|+|.+-++ |. .-+.|....
T Consensus 33 vp~k~~~~vvL~C~gcs~fp~fS~lYWl~gn 63 (141)
T PHA03112 33 IPTKETEKVVLECRGCSYFPKFSYVYWLIGN 63 (141)
T ss_pred cccCCCCEEEEEEECccCCCCceEEEEEcCC
Confidence 345789999999999874 54 457799644
No 425
>PHA03282 envelope glycoprotein E; Provisional
Probab=35.24 E-value=1.4e+02 Score=24.43 Aligned_cols=43 Identities=19% Similarity=0.230 Sum_probs=28.7
Q ss_pred cEEeeCCeEEECCCCCCCCeEEEEEeEeCCCC-ceeeEEEEEEE
Q psy15206 120 QTIFTGSTLQIPRITKEDRGAYYCVAQNGIGR-GARRKIEVKVE 162 (232)
Q Consensus 120 ~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-~~~~~~~l~v~ 162 (232)
+....+.+|.|.+++.+|+|.|.-.+...... .....+.+.|.
T Consensus 118 rvs~~n~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~ 161 (540)
T PHA03282 118 RVAVVNGTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVVG 161 (540)
T ss_pred ceeEecceEEEeeccccCCceEEEEecCCCCchhheEEEEEEec
Confidence 33445778999999999999999987543222 23334555554
No 426
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=32.42 E-value=70 Score=20.27 Aligned_cols=29 Identities=17% Similarity=0.346 Sum_probs=20.0
Q ss_pred CcceEeecCCeEEEEEEecCCCCCeEEEE
Q psy15206 20 TQLSVAKEGQSVQLECHAEGHPIPTISWR 48 (232)
Q Consensus 20 ~~~~~~~~G~~v~l~C~~~~~p~~~~~W~ 48 (232)
.+.+.+.+|+.|.+.-.-....+.++.|-
T Consensus 25 GPtI~v~~Gd~v~i~~~N~l~~~~siH~H 53 (117)
T PF07732_consen 25 GPTIRVREGDTVRITVTNNLDEPTSIHWH 53 (117)
T ss_dssp EEEEEEETTEEEEEEEEEESSSGBSEEEE
T ss_pred CCEEEEEcCCeeEEEEEeccccccccccc
Confidence 44566888888888777665445566665
No 427
>smart00089 PKD Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.
Probab=26.96 E-value=1.3e+02 Score=16.99 Aligned_cols=26 Identities=4% Similarity=-0.011 Sum_probs=16.5
Q ss_pred ccCeEEEEEEeec-CCCCeEEEeeCCE
Q psy15206 178 LHHDMDLDCHIEA-YPHPILYWAKDGE 203 (232)
Q Consensus 178 ~g~~~~l~C~~~~-~p~~~~~W~~~g~ 203 (232)
.+..+.+.....+ .....+.|...+.
T Consensus 13 ~~~~v~f~~~~~~~~~~~~~~W~fgdg 39 (79)
T smart00089 13 AGESVTFTATSSDDGSIVSYTWDFGDG 39 (79)
T ss_pred CCCEEEEEEECCCCCCeEEEEEEeCCC
Confidence 5777788877654 2344688876443
No 428
>cd00602 IPT_TF IPT domain of eukaryotic transcription factors NF-kappaB/Rel, nuclear factor of activated Tcells (NFAT), and recombination signal J-kappa binding protein (RBP-Jkappa). The IPT domains in these proteins are involved in DNA binding. Most NF-kappaB/Rel proteins form homo- and heterodimers, while NFAT proteins are largely monomeric (with TonEBP being an exception). While the majority of sequence-specific DNA binding elements are found in the N-terminal domain, several are found in the IPT domain in loops adjacent to, and including, the linker region.
Probab=22.61 E-value=2e+02 Score=17.79 Aligned_cols=33 Identities=15% Similarity=0.171 Sum_probs=24.7
Q ss_pred CcceEeecCCeEEEEEEecCCCCCeEEEEeCcE
Q psy15206 20 TQLSVAKEGQSVQLECHAEGHPIPTISWRRNFK 52 (232)
Q Consensus 20 ~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~ 52 (232)
.....+.-|+.+.|.|.-...+...+.++....
T Consensus 8 ~~s~~~~GG~ev~Ll~~k~~k~dikV~F~e~~~ 40 (101)
T cd00602 8 SLSGSVNGGDEVFLLCDKVNKPDIKVWFGEKGP 40 (101)
T ss_pred CCeeEcCCCcEEEEEecCCCCCCCEEEEEecCC
Confidence 345567789999999998887777876666433
No 429
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=21.69 E-value=1.5e+02 Score=16.48 Aligned_cols=21 Identities=29% Similarity=0.619 Sum_probs=13.4
Q ss_pred eecCCeEEEEEEecCCCCCeEEEEe
Q psy15206 25 AKEGQSVQLECHAEGHPIPTISWRR 49 (232)
Q Consensus 25 ~~~G~~v~l~C~~~~~p~~~~~W~~ 49 (232)
|..|++++|. |.+...++|++
T Consensus 2 v~~G~N~TL~----Gp~~~~V~Wy~ 22 (63)
T PF02440_consen 2 VTVGSNVTLV----GPPDGPVTWYK 22 (63)
T ss_pred EeEcCcEEEe----CCCCCceEEEE
Confidence 4567777763 33556788985
No 430
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=20.81 E-value=2.3e+02 Score=18.81 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=25.3
Q ss_pred eEEEeeCCEEe--------cCCCeEEEEEecc-ccCCceEEEEecCC
Q psy15206 195 ILYWAKDGEIV--------VNDEYHSISNFGT-SEGTTGSLQCKVPV 232 (232)
Q Consensus 195 ~~~W~~~g~~~--------~~~~~~~~~~~~~-~~~d~g~Y~C~~~~ 232 (232)
.+.|.+++..+ ..+..+.+.+.++ .....|.|...+++
T Consensus 81 ~v~~~~~~~~i~I~f~~PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~a 127 (146)
T PF10989_consen 81 EVEWDEDGRTITITFDEPVPPGTTVTVVLSPVRNPRSGGTYQFNVTA 127 (146)
T ss_pred EEEEcCCCCEEEEEeCCCCCCCCEEEEEEEeeeCCCCCCeEEEEEEE
Confidence 57888776554 3566777777655 33555899888753
No 431
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=20.79 E-value=3.3e+02 Score=19.61 Aligned_cols=91 Identities=18% Similarity=0.296 Sum_probs=43.8
Q ss_pred eEEEEeCcEeeeeEEEEeeeecCceeecCCcEEecCCCCceEeecCCcEEEEeeeccCCC--CeEEEEeCCeeeCCCCcE
Q psy15206 44 TISWRRNFKRLGRLHLAIPYTSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPI--PTISWRRENNAILPNGQT 121 (232)
Q Consensus 44 ~~~W~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~~~W~~~~~~~~~~~~~ 121 (232)
++.|+++.....+++- ...-.|+.+|.+.. ....| ...|.+..-|. ..+.|..++.........
T Consensus 58 ~v~W~r~~v~~~r~~a-----~~~P~Vy~~P~vsv------~F~~g---~AVC~A~CVP~~~v~l~W~v~d~~~~~~~~~ 123 (211)
T PF02124_consen 58 QVTWYRDSVSETRFNA-----TATPSVYPKPRVSV------RFEDG---YAVCTARCVPRGNVTLRWSVGDDPSPAPAAT 123 (211)
T ss_pred EEEEccCCCeeeEeec-----ccccceecCCEEEE------EecCC---EEEEEcceeeCCCeEEEEEECCccCCCCCce
Confidence 5668877665555532 33444444444332 12122 33466554442 579999877543111111
Q ss_pred Ee------eCCeEEECCC--CCCCCe--EEEEEeEeC
Q psy15206 122 IF------TGSTLQIPRI--TKEDRG--AYYCVAQNG 148 (232)
Q Consensus 122 ~~------~~~~l~i~~~--~~~~~g--~y~C~~~~~ 148 (232)
.. ..+...|... .....| .|+|....-
T Consensus 124 ~~~g~C~~~pglvnirs~~pls~~~~~~~YtC~l~GY 160 (211)
T PF02124_consen 124 EITGVCAEHPGLVNIRSRRPLSDEDGPVEYTCRLIGY 160 (211)
T ss_pred eecCcccCCcceeEeecccCCCccCCceeEEEEEeeC
Confidence 11 1122333322 223334 899998763
Done!