RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15206
(232 letters)
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 151 bits (383), Expect = 3e-45
Identities = 47/243 (19%), Positives = 78/243 (32%), Gaps = 43/243 (17%)
Query: 24 VAKEGQSVQLECHAEGHP-IPTISWRR-----------------NFKRLGRLHL------ 59
G+S C G ISW N L +
Sbjct: 13 EISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANID 72
Query: 60 -AIPYT-----------SPEAQVD-TPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTI 106
A Y V ++ N+P KEG+ + C PTI
Sbjct: 73 DAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTI 132
Query: 107 SWRRENNAILPNGQ---TIFTGSTLQIPRITKEDRGAYYCVAQNGIGRG-ARRKIEVKVE 162
W+ + ++ + + + LQI I K D G Y C + + I+V V
Sbjct: 133 IWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVN 192
Query: 163 FAPIVTVQSTRIGQALH--HDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSE 220
P V + + + + + L C + +P P + W KDGE + N+E + + +
Sbjct: 193 VPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDD 252
Query: 221 GTT 223
+
Sbjct: 253 SSE 255
Score = 100 bits (250), Expect = 1e-25
Identities = 29/132 (21%), Positives = 40/132 (30%), Gaps = 8/132 (6%)
Query: 80 SPQLSVAKEGQSVQLECHAEGHP-IPTISWRRENNAILPNGQTIFT-------GSTLQIP 131
P G+S C G ISW N L Q + STL I
Sbjct: 8 VPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIY 67
Query: 132 RITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAY 191
+D G Y CV G + + VK+ + T D + C + +
Sbjct: 68 NANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSS 127
Query: 192 PHPILYWAKDGE 203
P + W G
Sbjct: 128 LPPTIIWKHKGR 139
Score = 61.8 bits (150), Expect = 1e-11
Identities = 35/155 (22%), Positives = 48/155 (30%), Gaps = 57/155 (36%)
Query: 8 QVDTPPVI-LNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRLGRLHLAIPYTSP 66
V+ PP + S + A GQSV L C A+G P PT+SW ++
Sbjct: 190 IVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKD---------------- 233
Query: 67 EAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGS 126
G PI E + + S
Sbjct: 234 ---------------------------------GEPIENEEEDDEKHIFSDD------SS 254
Query: 127 TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161
L I + K D Y C+A+N G I +KV
Sbjct: 255 ELTIRNVDKNDEAEYVCIAENKAGE-QDASIHLKV 288
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 147 bits (373), Expect = 1e-43
Identities = 45/253 (17%), Positives = 87/253 (34%), Gaps = 43/253 (16%)
Query: 12 PPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL------------GRLHL 59
PP + +A G+S +CH G I+W ++ + + L
Sbjct: 5 PPFFDLKPVSVDLA-LGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATL 63
Query: 60 AIPYTSPE---------------------AQVDTPPVILNNSPQLSVAKEGQSVQLECHA 98
+ + V PP + + K+ + + EC
Sbjct: 64 TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKI 123
Query: 99 EGHPIPTISWRRENNAILPNGQTIFT----GSTLQIPRITKEDRGAYYCVAQNGIGRGAR 154
G P + W ++ I + + + + L++ ++ ED G Y C A N G A
Sbjct: 124 GGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGS-AS 182
Query: 155 RKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSIS 214
+KV+ P+ + + D+ L+C ++ P + W KD + + + + I
Sbjct: 183 SSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKI- 241
Query: 215 NFGTSEGTTGSLQ 227
SE S+
Sbjct: 242 ---MSENFLTSIH 251
Score = 116 bits (293), Expect = 6e-32
Identities = 35/192 (18%), Positives = 61/192 (31%), Gaps = 39/192 (20%)
Query: 8 QVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL---GRLH------ 58
V PP + + K+ + + EC G P + W ++ + +
Sbjct: 94 GVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVES 153
Query: 59 ---LAIPYTSPE--------AQ-------------VDTPPVILNNSPQLSVAKEGQSVQL 94
L + S E A V PPV P +G V L
Sbjct: 154 VAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKK-PHPVETLKGADVHL 212
Query: 95 ECHAEGHPIPTISWRRENNAILPNGQTIFT----GSTLQIPRITKEDRGAYYCVAQNGIG 150
EC +G P +SW ++ + + +++ I + D G Y C A N +G
Sbjct: 213 ECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVG 272
Query: 151 RGARRKIEVKVE 162
+ ++
Sbjct: 273 S-YTCVGSITLK 283
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 144 bits (366), Expect = 1e-40
Identities = 47/254 (18%), Positives = 89/254 (35%), Gaps = 43/254 (16%)
Query: 11 TPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL---GRL---------H 58
PP + +A G+S +CH G I+W ++ + + G
Sbjct: 196 VPPFFDLKPVSVDLA-LGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTAT 254
Query: 59 LAIPYTSPE--------A-------------QVDTPPVILNNSPQLSVAKEGQSVQLECH 97
L + + A V PP + + K+ + + EC
Sbjct: 255 LTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECK 314
Query: 98 AEGHPIPTISWRRENNAILPNG----QTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGA 153
G P + W ++ I + + + + L++ ++ ED G Y C A N G A
Sbjct: 315 IGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGS-A 373
Query: 154 RRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSI 213
+KV+ P+ + + D+ L+C ++ P + W KD + + + + I
Sbjct: 374 SSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKI 433
Query: 214 SNFGTSEGTTGSLQ 227
SE S+
Sbjct: 434 ----MSENFLTSIH 443
Score = 134 bits (340), Expect = 6e-37
Identities = 44/257 (17%), Positives = 83/257 (32%), Gaps = 42/257 (16%)
Query: 8 QVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRLGRLH--------- 58
V PP + + K+ + + EC G P + W ++ +
Sbjct: 286 GVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVES 345
Query: 59 ---LAIP---------------------YTSPEAQVDTPPVILNNSPQLSVAKEGQSVQL 94
L + +S +V PPV P +G V L
Sbjct: 346 VAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKK-PHPVETLKGADVHL 404
Query: 95 ECHAEGHPIPTISWRRENNAILPNGQTIFT----GSTLQIPRITKEDRGAYYCVAQNGIG 150
EC +G P +SW ++ + + +++ I + D G Y C A N +G
Sbjct: 405 ECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVG 464
Query: 151 RGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEY 210
+ ++ P + + I + ++ L IE + W KD +V +
Sbjct: 465 S-DTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESD 523
Query: 211 HSISNFGTSEGTTGSLQ 227
+ ++ +LQ
Sbjct: 524 NIWISY---SENIATLQ 537
Score = 134 bits (338), Expect = 1e-36
Identities = 47/259 (18%), Positives = 77/259 (29%), Gaps = 48/259 (18%)
Query: 10 DTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL------------GRL 57
PP + G V EC G +SW ++ + L
Sbjct: 99 KLPPSFARKLKDVHE-TLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVA 157
Query: 58 HLAIPYTSPE------------------------AQVDTPPVILNNSPQLSVAKEGQSVQ 93
L I T ++ + PP P G+S
Sbjct: 158 TLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDL-KPVSVDLALGESGT 216
Query: 94 LECHAEGHPIPTISWRRENNAILPNG----QTIFTGSTLQIPRITKEDRGAYYCVAQNGI 149
+CH G I+W ++N I P G + +TL + ++TK D G Y C A N
Sbjct: 217 FKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVA 276
Query: 150 GRGARRKIEVKVEFAP-IVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVND 208
G+ ++ V+ P + +C I P + W KD +
Sbjct: 277 GK-DSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQES 335
Query: 209 EYHSISNFGTSEGTTGSLQ 227
+ + + L+
Sbjct: 336 SKFRM----SFVESVAVLE 350
Score = 132 bits (333), Expect = 8e-36
Identities = 45/259 (17%), Positives = 78/259 (30%), Gaps = 50/259 (19%)
Query: 12 PPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL------------GRLHL 59
PP + + G+ + L+C +G P I+W + +L L
Sbjct: 5 PPYFIEPLEHVEA-AIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASL 63
Query: 60 AIPYTSPE------------------------AQVDTPPVILNNSPQLSVAKEGQSVQLE 95
I + PP + G V E
Sbjct: 64 VINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFAR-KLKDVHETLGFPVAFE 122
Query: 96 CHAEGHPIPTISWRRENNAILPNGQTIFT----GSTLQIPRITKEDRGAYYCVAQNGIGR 151
C G +SW ++ + + + +TLQI + + G Y C A N +G
Sbjct: 123 CRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGT 182
Query: 152 GARRKIEVKV---EFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVND 208
A ++ + E P ++ + AL CH+ + WAKD +
Sbjct: 183 -ASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPG 241
Query: 209 EYHSISNFGTSEGTTGSLQ 227
+ + T T +L
Sbjct: 242 GNYKM----TLVENTATLT 256
Score = 110 bits (276), Expect = 5e-28
Identities = 37/192 (19%), Positives = 61/192 (31%), Gaps = 41/192 (21%)
Query: 8 QVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL------------G 55
+V PPV + +G V LEC +G P +SW ++ + L
Sbjct: 380 KVKEPPVFRKKPHPVETL-KGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENF 438
Query: 56 RLHLAIPYTSPE--------A-------------QVDTPPVILNNSPQLSVAKEGQSVQL 94
+ I A + PP + G+ VQL
Sbjct: 439 LTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVK-KLSDISTVVGEEVQL 497
Query: 95 ECHAEGHPIPTISWRRENNAILPNGQTIFT-----GSTLQIPRITKEDRGAYYCVAQNGI 149
+ EG +++W ++ I+ I+ +TLQ R + G Y C +N
Sbjct: 498 QATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEA 557
Query: 150 GRGARRKIEVKV 161
G + V
Sbjct: 558 GT-QECFATLSV 568
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 138 bits (350), Expect = 3e-39
Identities = 59/252 (23%), Positives = 93/252 (36%), Gaps = 43/252 (17%)
Query: 8 QVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRLGRLH--------- 58
V P L+ T+ A G +V L+C G P+PTI W++N + L +
Sbjct: 117 MVAGPLRFLS-QTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLP 175
Query: 59 ---LAIP---------YT-----------SPEAQVD-------TPPVILNNSPQLSVAKE 88
L I Y EA+V + P +A E
Sbjct: 176 SGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIE 235
Query: 89 GQSVQLECHAEGHPIPTISWRRENNAILPNGQ--TIFTGSTLQIPRITKEDRGAYYCVAQ 146
G+ LEC G+P P+ +W R I + ++ GS L I +T +D G Y CV
Sbjct: 236 GKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVT 295
Query: 147 NGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVV 206
E+ V P + + D++ +C + P P + W K+G++V+
Sbjct: 296 YKNEN-ISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVI 354
Query: 207 NDEYHSISNFGT 218
+Y I
Sbjct: 355 PSDYFQIVGGSN 366
Score = 131 bits (331), Expect = 2e-36
Identities = 50/262 (19%), Positives = 84/262 (32%), Gaps = 53/262 (20%)
Query: 8 QVDTPPVILNNSTQLSVAKEGQSVQLECHAEG-HPIPTISWRRNFKRL------------ 54
++ + G +V L C AE +P I W+++ L
Sbjct: 17 GGRRSLHFVSEPSDAVT-MRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLP 75
Query: 55 -GRLHLAIPYTSPEAQVD--------------------------TPPVILNNSPQLSVAK 87
G L + S + D P L+ + A
Sbjct: 76 NGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLS-QTESITAF 134
Query: 88 EGQSVQLECHAEGHPIPTISWRRENNAILPNG----QTIFTGSTLQIPRITKEDRGAYYC 143
G +V L+C G P+PTI W++ + P + LQI R+ D G Y C
Sbjct: 135 MGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRC 194
Query: 144 VAQNGIGRGARRKIEVKV------EFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILY 197
A+N + EV++ + + + D L+C + YP P
Sbjct: 195 SARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFT 254
Query: 198 WAKDGE-IVVNDEYHSISNFGT 218
W + E I + + +S+
Sbjct: 255 WLRGEEVIQLRSKKYSLLGGSN 276
Score = 113 bits (284), Expect = 9e-30
Identities = 47/190 (24%), Positives = 75/190 (39%), Gaps = 35/190 (18%)
Query: 5 PESQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRN----------FKRL 54
+ + L + + EG+ LEC G+P P+ +W R + L
Sbjct: 214 SDPGLHRQLYFLQRPSNVIAI-EGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLL 272
Query: 55 GRLHLAIPYTSPE--------A-------------QVDTPPVILNNSPQLSVAKEGQSVQ 93
G +L I + + V PP LN P A E ++
Sbjct: 273 GGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLN-HPSNLYAYESMDIE 331
Query: 94 LECHAEGHPIPTISWRRENNAILPNG-QTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRG 152
EC G P+PT++W + + ++P+ I GS L+I + K D G Y CVA+N G
Sbjct: 332 FECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGN- 390
Query: 153 ARRKIEVKVE 162
A+ ++ V
Sbjct: 391 AQSSAQLIVP 400
Score = 31.7 bits (72), Expect = 0.17
Identities = 12/76 (15%), Positives = 23/76 (30%), Gaps = 6/76 (7%)
Query: 153 ARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEA-YPHPILYWAKDGEIVVNDEYH 211
+ + + + ++ L+C E+ P++ W KDG I+
Sbjct: 10 SHHHHHHGGRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDD 69
Query: 212 SISNFGTSEGTTGSLQ 227
GSL
Sbjct: 70 RKQQL-----PNGSLL 80
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 137 bits (347), Expect = 6e-39
Identities = 51/251 (20%), Positives = 87/251 (34%), Gaps = 44/251 (17%)
Query: 8 QVDTPPVILNNSTQLSVAKEGQSVQLECHA-EGHPIPTISWRRNFKRL------------ 54
Q + + GQ + L C + +W N
Sbjct: 97 QFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQET 156
Query: 55 GRLHLA-----------------------------IPYTSPEAQVDTPPVILNNSPQLSV 85
G L++A + + + P I P+
Sbjct: 157 GNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVP 216
Query: 86 AKEGQSVQLECHAEGHPIPTISWRRENNAILPNG-QTIFTGSTLQIPRITKEDRGAYYCV 144
A++G +V+LEC A G+P+PTI WRR + + + + L+IP +ED G+Y CV
Sbjct: 217 AEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECV 276
Query: 145 AQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEI 204
A+N G+ K ++ P I A+ + +C P P W K+G+
Sbjct: 277 AENSRGK-NVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDP 335
Query: 205 VVNDEYHSISN 215
++ + I
Sbjct: 336 LLTRDRIQIEQ 346
Score = 124 bits (313), Expect = 5e-34
Identities = 48/254 (18%), Positives = 78/254 (30%), Gaps = 49/254 (19%)
Query: 11 TPPVILN--NSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL------------GR 56
+ PV + + + E + V+L C +G+P P I W+ N + G
Sbjct: 4 SGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGS 63
Query: 57 LHLAIP--------YT-----------SPEA--QVDTPPVILNNSPQLSVAKEGQSVQLE 95
L + P Y S EA Q + + GQ + L
Sbjct: 64 LLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLL 123
Query: 96 CHA-EGHPIPTISWRRENNAILPNGQ--TIFTGSTLQIPRITKEDRGAYYCVAQNGIGRG 152
C + +W + + L I ++ K D G Y CV N +
Sbjct: 124 CGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNH 183
Query: 153 ARRKIEVKV---------EFAPIVTVQSTRIGQAL-HHDMDLDCHIEAYPHPILYWAK-D 201
+ E+ P + VQ A + L+C P P + W + D
Sbjct: 184 KVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRAD 243
Query: 202 GEIVVNDEYHSISN 215
G+ + SN
Sbjct: 244 GKPIARKARRHKSN 257
Score = 118 bits (298), Expect = 6e-32
Identities = 47/189 (24%), Positives = 66/189 (34%), Gaps = 32/189 (16%)
Query: 3 TSPESQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRN---------FKR 53
+ + P I + A++G +V+LEC A G+P+PTI WRR +
Sbjct: 195 RNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRH 254
Query: 54 LGRLHLAIPYTSPE--------A-------------QVDTPPVILNNSPQLSVAKEGQSV 92
L IP E A P + +SV
Sbjct: 255 KSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQ-IINDIHVAMEESV 313
Query: 93 QLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRG 152
EC A G P PT W + + +L + TL I + D G Y CVA+N G
Sbjct: 314 FWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHGV- 372
Query: 153 ARRKIEVKV 161
E+ V
Sbjct: 373 IFSSAELSV 381
Score = 97.2 bits (242), Expect = 7e-24
Identities = 30/159 (18%), Positives = 54/159 (33%), Gaps = 16/159 (10%)
Query: 72 TPPVILNNSPQLSV--AKEGQSVQLECHAEGHPIPTISWRRENNAI--LPNGQTIFTGST 127
+ PV + + E + V+L C +G+P P I W+ + + + +
Sbjct: 4 SGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGS 63
Query: 128 LQIPRITK-EDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQ-----STRIGQALHHD 181
L I K +D G Y C+A N G R+ +++ + + S R GQ +
Sbjct: 64 LLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMV-- 121
Query: 182 MDLDCHI-EAYPHPILYWAKDGE-IVVNDEYHSISNFGT 218
L C W + ++ G
Sbjct: 122 --LLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGN 158
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 138 bits (349), Expect = 8e-38
Identities = 51/267 (19%), Positives = 84/267 (31%), Gaps = 55/267 (20%)
Query: 4 SPESQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRLGRLH----- 58
+ P V+ + ++ L C A+G+P+P W + + R
Sbjct: 239 TEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLN 298
Query: 59 ---------LAIPYTSPE--------AQ-------------VDTPPVILNNSPQLSVAKE 88
L I E V P P
Sbjct: 299 DRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKI-DPPTQTVDF 357
Query: 89 GQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNG 148
G+ C G+PI T+SW ++ AI + S L+I + KED+G Y C +N
Sbjct: 358 GRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE------SVLRIESVKKEDKGMYQCFVRND 411
Query: 149 IGRGARRKIEVKVE-------FAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKD 201
A E+K+ ++ G + L C P P + W D
Sbjct: 412 RES-AEASAELKLGGRFDPPVIRQAFQEETMEPGP----SVFLKCVAGGNPTPEISWELD 466
Query: 202 GEIVVNDEYHSISNFGTSEGT-TGSLQ 227
G+ + N++ + + + T G L
Sbjct: 467 GKKIANNDRYQVGQYVTVNGDVVSYLN 493
Score = 134 bits (338), Expect = 3e-36
Identities = 60/257 (23%), Positives = 96/257 (37%), Gaps = 44/257 (17%)
Query: 8 QVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL------------- 54
P ++ + Q + G SV L+C A G+P P ISW + K++
Sbjct: 424 GGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVT 483
Query: 55 ----GRLHLAIPYTSPE--------AQ-------------VDTPPVILNNSPQLSVAKEG 89
+L I A+ V P I + G
Sbjct: 484 VNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYI--RQMEKKAIVAG 541
Query: 90 QSVQLECHAEGHPIPTISWRRENNAILPNG-QTIFTGSTLQIPRITK-EDRGAYYCVAQN 147
+++ + C G+PI +I W R+N A+ N Q +F TL I + + D+ Y CVA+N
Sbjct: 542 ETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKN 601
Query: 148 GIGRGARRKIEVKVEFAP-IVTVQSTRIGQALHHDMDLDCHIEAYPHPI-LYWAKDGEIV 205
G AR +EV+V P I+ + + L C + P+ + W DG+ +
Sbjct: 602 QEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAI 661
Query: 206 VNDEYHSISNFGTSEGT 222
D + S G
Sbjct: 662 SEDLGITTSRVGRRGSV 678
Score = 133 bits (337), Expect = 4e-36
Identities = 55/258 (21%), Positives = 87/258 (33%), Gaps = 42/258 (16%)
Query: 8 QVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRN---------FKRLGRLH 58
V P I + G+++ + C G+PI +I W R+ K
Sbjct: 523 NVYGLPYIRQMEKK--AIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGT 580
Query: 59 LAIP----------YT-------------SPEAQVDTPPVILNNSPQLSVAKEGQSVQLE 95
L I YT S E QV P I+ + + A+ GQ + L
Sbjct: 581 LIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLH 640
Query: 96 CHAEGHPIP-TISWRRENNAILPNGQTIFT-----GSTLQIPRITKEDRGAYYCVAQNGI 149
C G +P I W + AI + + GS L I + G + C A+N
Sbjct: 641 CSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLA 700
Query: 150 GRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDE 209
G + + V P ++ T A D ++C + +P P + W K +
Sbjct: 701 GH-QQFTTPLNVYVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGE- 758
Query: 210 YHSISNFGTSEGTTGSLQ 227
Y + G+L
Sbjct: 759 YKDLKKSDNIRVEEGTLH 776
Score = 133 bits (335), Expect = 7e-36
Identities = 52/247 (21%), Positives = 88/247 (35%), Gaps = 43/247 (17%)
Query: 9 VDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL--GRLHLAIPYTSP 66
V P + +V G+ C G+PI T+SW ++ K + L I
Sbjct: 340 VTAPLSAKIDPPTQTVD-FGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRIESVKK 398
Query: 67 E-------------------AQVD----TPPVILNNSPQLSVAKEGQSVQLECHAEGHPI 103
E A++ P ++ + Q + G SV L+C A G+P
Sbjct: 399 EDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPT 458
Query: 104 PTISWRRENNAILPNG---------QTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGAR 154
P ISW + I N S L I + D G Y C+A++ +G A
Sbjct: 459 PEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGV-AE 517
Query: 155 RKIEVKVEFAPIVTV---QSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYH 211
++ V P + ++ G+ + + C + YP + W +D + +
Sbjct: 518 HSAKLNVYGLPYIRQMEKKAIVAGE----TLIVTCPVAGYPIDSIVWERDNRALPINRKQ 573
Query: 212 SISNFGT 218
+ GT
Sbjct: 574 KVFPNGT 580
Score = 124 bits (313), Expect = 6e-33
Identities = 46/279 (16%), Positives = 77/279 (27%), Gaps = 60/279 (21%)
Query: 8 QVDTPPVILNNSTQLSVAKEGQSVQLECHAE---GHPIPTISWRRNFKRL--------GR 56
+ + + V G S ++C + +SW + + G+
Sbjct: 134 RAVVAQYYEADVNKEHVI-RGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGK 192
Query: 57 LH------LAIPYTSPE--------------------------------AQVDTPPVILN 78
L I PE P V+
Sbjct: 193 YLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSL 252
Query: 79 NSPQLSVAKEGQSVQLECHAEGHPIPTISWRRE------NNAILPNGQTIFTGSTLQIPR 132
+ ++ L C A+G+P+P W + A++ N + TL I
Sbjct: 253 AKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKD 312
Query: 133 ITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYP 192
ED G Y CV N +G + + V + C P
Sbjct: 313 AVVEDSGKYLCVVNNSVGG-ESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNP 371
Query: 193 HPILYWAKDGE-IVVNDEYHSISNFGTSEGTTGSLQCKV 230
+ W KDG+ I ++ I + + G QC V
Sbjct: 372 IKTVSWMKDGKAIGHSESVLRIESVKKED--KGMYQCFV 408
Score = 112 bits (282), Expect = 1e-28
Identities = 43/279 (15%), Positives = 73/279 (26%), Gaps = 58/279 (20%)
Query: 3 TSPESQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL-------- 54
+P PV L T ++EC A G+P+P I W R+
Sbjct: 29 ANPPDADQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLR 88
Query: 55 -----GRLHLAIP-------------YT-----------SPEAQVD-TPPVILNNSPQLS 84
G+L Y S + V
Sbjct: 89 QISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKE 148
Query: 85 VAKEGQSVQLECHAE---GHPIPTISWRRENNAILPNGQ------TIFTGSTLQIPRITK 135
G S ++C + +SW + G + L I +
Sbjct: 149 HVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGP 208
Query: 136 ED-RGAYYCVAQNGIGRGARRKIE---------VKVEFAPIVTVQSTRIGQAL-HHDMDL 184
ED +Y C ++ + R + +V++ + M L
Sbjct: 209 EDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMAL 268
Query: 185 DCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTT 223
C + YP P+ W K E + +++ T
Sbjct: 269 LCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGT 307
Score = 103 bits (259), Expect = 1e-25
Identities = 42/200 (21%), Positives = 66/200 (33%), Gaps = 43/200 (21%)
Query: 8 QVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIP-TISWRRNFKRL------------ 54
QV P I+ + + A+ GQ + L C G +P I W + + +
Sbjct: 614 QVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVG 673
Query: 55 -GRLHLAIPYTSPEAQ---------------------VDTPPVILNNSPQLSVAKEGQSV 92
L I V PP + P +G
Sbjct: 674 RRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILE-PTDKAFAQGSDA 732
Query: 93 QLECHAEGHPIPTISWRRENNAILPNGQTIFTG-------STLQIPRITKEDRGAYYCVA 145
++EC A+G P P ++W++ + + TL + I K + G Y C A
Sbjct: 733 KVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEA 792
Query: 146 QNGIGRGARRKIEVKVEFAP 165
NGIG G I + V+
Sbjct: 793 INGIGSGLSAVIMISVQAHH 812
Score = 101 bits (253), Expect = 6e-25
Identities = 34/176 (19%), Positives = 56/176 (31%), Gaps = 14/176 (7%)
Query: 64 TSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAIL---PNGQ 120
+P PV L ++EC A G+P+P I W R + + P +
Sbjct: 29 ANPPDADQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLR 88
Query: 121 TIFTGSTLQIPRITKEDR------GAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRI 174
I + L P ED Y C+A+N G R + V+ A +
Sbjct: 89 QISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKE 148
Query: 175 GQALHHDMDLDCHIEAY---PHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQ 227
+ + C I ++ ++ W D E + +G L
Sbjct: 149 HVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLP--SGELH 202
Score = 53.8 bits (129), Expect = 1e-08
Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 4/95 (4%)
Query: 128 LQIPRITKEDRGAYYCVAQNGIGRGARR-KIEVKVEFAPIVTVQST-RIGQALHHDMDLD 185
+ +P + + VA G + P+ + T RI + +++
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIE 60
Query: 186 CHIEAYPHPILYWAKDGEIVVND--EYHSISNFGT 218
C P P + W + V D IS+ G
Sbjct: 61 CKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGK 95
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 132 bits (334), Expect = 6e-36
Identities = 44/255 (17%), Positives = 78/255 (30%), Gaps = 39/255 (15%)
Query: 8 QVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRLGRL-----HLAIP 62
V P S + + G ++ L CHA +P SW + G + L I
Sbjct: 376 NVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLID----GNIQQHTQELFIS 431
Query: 63 YTSPE-------------------AQVD-----TPPVILNNSPQLSVAKEGQSVQLECHA 98
+ + P +S ++ +V C
Sbjct: 432 NITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEP 491
Query: 99 EGHPIPTISWRRENNAILPNG--QTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRK 156
E T W ++ + Q TL + +T+ D AY C QN +
Sbjct: 492 EAQN-TTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDP 550
Query: 157 IEVKVEFAP-IVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISN 215
+ + V + P + +++L CH + P P W +G + + I+
Sbjct: 551 VTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQHTQVLFIAK 610
Query: 216 FGTSEGTTGSLQCKV 230
+ G+ C V
Sbjct: 611 --ITPNNNGTYACFV 623
Score = 130 bits (327), Expect = 5e-35
Identities = 52/251 (20%), Positives = 86/251 (34%), Gaps = 31/251 (12%)
Query: 8 QVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL---GRLHL----- 59
V P S + + G+++ L CHA +P SW N L +
Sbjct: 198 NVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQELFIPNITV 257
Query: 60 --AIPYT------------SPEAQVD---TPPVILNNSPQLSVAKEGQSVQLECHAEGHP 102
+ YT + + PP S + ++ +V L C E
Sbjct: 258 NNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQN 317
Query: 103 IPTISWRRENNAILPNG--QTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVK 160
T W N ++ + Q TL + +T+ D G Y C QN + + +
Sbjct: 318 -TTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILN 376
Query: 161 VEFAP-IVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTS 219
V + P T+ + ++ L CH + P W DG I + + ISN +
Sbjct: 377 VLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQELFISN--IT 434
Query: 220 EGTTGSLQCKV 230
E +G C+
Sbjct: 435 EKNSGLYTCQA 445
Score = 120 bits (303), Expect = 1e-31
Identities = 43/241 (17%), Positives = 66/241 (27%), Gaps = 41/241 (17%)
Query: 12 PPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRLGRLH---------LAIP 62
PP S + ++ +V L C E + W N L +
Sbjct: 288 PPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLL 347
Query: 63 YTSPE----------------------AQVDTPPVILNNSPQLSVAKEGQSVQLECHAEG 100
+ V P SP + + G ++ L CHA
Sbjct: 348 SVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAAS 407
Query: 101 HPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIG---RGARRKI 157
+P SW +G L I IT+++ G Y C A N R + I
Sbjct: 408 NPPAQYSWLI-------DGNIQQHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTI 460
Query: 158 EVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFG 217
V E + + C EA L+W + V+ +
Sbjct: 461 TVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWVNGQSLPVSPRLQLSNGNR 520
Query: 218 T 218
T
Sbjct: 521 T 521
Score = 120 bits (303), Expect = 1e-31
Identities = 46/245 (18%), Positives = 69/245 (28%), Gaps = 42/245 (17%)
Query: 9 VDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRN---------FKRLGRLHL 59
P +S ++ +V C E + W N G L
Sbjct: 107 YPELPKPSISSNNSKPVEDKDAVAFTCEPETQDATYLWWVNNQSLPVSPRLQLSNGNRTL 166
Query: 60 AIP---------YT-----------SPEA--QVDTPPVILNNSPQLSVAKEGQSVQLECH 97
+ Y S V P SP + + G+++ L CH
Sbjct: 167 TLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCH 226
Query: 98 AEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIG---RGAR 154
A +P SW NG + L IP IT + G+Y C A N R
Sbjct: 227 AASNPPAQYSWFV-------NGTFQQSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTV 279
Query: 155 RKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSIS 214
I V E + + L C E L+W + + + +S
Sbjct: 280 TTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWW-VNNQSLPVSPRLQLS 338
Query: 215 NFGTS 219
N +
Sbjct: 339 NDNRT 343
Score = 100 bits (250), Expect = 1e-24
Identities = 35/181 (19%), Positives = 48/181 (26%), Gaps = 39/181 (21%)
Query: 12 PPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRLGRLHLAIP--------- 62
P +S ++ +V C E + W L +
Sbjct: 466 LPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWVNGQSLPVSPRLQLSNGNRTLTLF 525
Query: 63 ---------YT-----------SPEA--QVDTPPVILNNSPQLSVAKEGQSVQLECHAEG 100
Y S V P SP S G ++ L CH+
Sbjct: 526 NVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSAS 585
Query: 101 HPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVK 160
+P P SWR NG L I +IT + G Y C N G I
Sbjct: 586 NPSPQYSWRI-------NGIPQQHTQVLFIAKITPNNNGTYACFVSNLAT-GRNNSIVKS 637
Query: 161 V 161
+
Sbjct: 638 I 638
Score = 83.9 bits (207), Expect = 7e-19
Identities = 26/178 (14%), Positives = 44/178 (24%), Gaps = 28/178 (15%)
Query: 81 PQLSVAKEGQSVQLECHAEGHPIPTISWRR---------------ENNAILPNG-----Q 120
EG+ V L H + SW + P +
Sbjct: 6 STPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGRE 65
Query: 121 TIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRK--IEVKVEFAPIVTVQSTRIGQAL 178
I+ ++L I I + D G Y V E +
Sbjct: 66 IIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVED 125
Query: 179 HHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGT------SEGTTGSLQCKV 230
+ C E L+W + + V+ + T + T S +C+
Sbjct: 126 KDAVAFTCEPETQDATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCET 183
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 129 bits (326), Expect = 9e-36
Identities = 49/268 (18%), Positives = 86/268 (32%), Gaps = 55/268 (20%)
Query: 6 ESQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL----------- 54
++++ PP I S + + ++ +EC A+G+P P+ W RN +
Sbjct: 10 QNELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMR 69
Query: 55 ---GRLHLAIP-----------YT-----------SPEA--QVDTPPVILNNSPQLSVAK 87
G L + Y S QV P+ + V +
Sbjct: 70 RRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQ 129
Query: 88 EGQSVQLECHA-EGHPIPTISWRRENNAILPNG--QTIFTGSTLQIPRITKED-RGAYYC 143
EG + L+C+ G P P I W + + + L + +D + Y C
Sbjct: 130 EGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSC 189
Query: 144 VAQNGIGRGARRKIEVKV---------EFAPIVTVQSTRIGQ---ALHHDMDLDCHIEAY 191
A+ ++K + E P D+ L+C
Sbjct: 190 NARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGV 249
Query: 192 PHPILYWAKDGEIVVNDEYHSISNFGTS 219
P P + W K G + +D+ NF +
Sbjct: 250 PTPDIAWYKKGGDLPSDKAK-FENFNKA 276
Score = 129 bits (325), Expect = 1e-35
Identities = 53/257 (20%), Positives = 89/257 (34%), Gaps = 50/257 (19%)
Query: 8 QVDTPPVILNNSTQLSVAKEGQSVQLECHA-EGHPIPTISWRRNFKRL------------ 54
QV P+ + V +EG + L+C+ G P P I W +
Sbjct: 111 QVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHN 170
Query: 55 GRLH--------------------------------LAIPYTSPEAQVDTPPVILNNSPQ 82
G L+ L + T A+ + +
Sbjct: 171 GDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTAS 230
Query: 83 LSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTI-FTGSTLQIPRITKEDRGAY 141
+ G + LEC A G P P I+W ++ + + L+I +++ED G Y
Sbjct: 231 SQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEY 290
Query: 142 YCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKD 201
+C+A N +G R I V+V+ AP + + A D L C P P + W +
Sbjct: 291 FCLASNKMGS-IRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVN 349
Query: 202 GEIVV---NDEYHSISN 215
GE + + ++
Sbjct: 350 GEPLQSAPPNPNREVAG 366
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 128 bits (324), Expect = 1e-35
Identities = 48/253 (18%), Positives = 77/253 (30%), Gaps = 48/253 (18%)
Query: 8 QVDTPPVILNNSTQLSVAKEGQSVQLECHA-EGHPIPTISWRRNFKRL------------ 54
+ EG V C +P + W N
Sbjct: 96 RFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQ 155
Query: 55 --GRLHL------------------------------AIPYTSPEAQVDTPPVILNNSPQ 82
G L++ + + E P I P
Sbjct: 156 TTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPA 215
Query: 83 LSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYY 142
+ A GQ V LEC A G+P+P I WR+ + + + + + L I + ED G Y
Sbjct: 216 DTYALTGQMVTLECFAFGNPVPQIKWRKLDGS--QTSKWLSSEPLLHIQNVDFEDEGTYE 273
Query: 143 CVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDG 202
C A+N GR + + + P T + D+ C P P + W +DG
Sbjct: 274 CEAENIKGR-DTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDG 332
Query: 203 EIVVNDEYHSISN 215
+ + + +S
Sbjct: 333 QPLASQNRIEVSG 345
Score = 120 bits (302), Expect = 2e-32
Identities = 45/186 (24%), Positives = 66/186 (35%), Gaps = 29/186 (15%)
Query: 4 SPESQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRN------FKRLGRL 57
+ E P I + A GQ V LEC A G+P+P I WR+
Sbjct: 198 AAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEP 257
Query: 58 HLAIPYTSPE--------A-------------QVDTPPVILNNSPQLSVAKEGQSVQLEC 96
L I E A + P L+ + A G ++ C
Sbjct: 258 LLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLD-VITDTEADIGSDLRWSC 316
Query: 97 HAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRK 156
A G P P + W R+ + + +G L+ ++ ED G Y CVA+N G
Sbjct: 317 VASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGT-VYAS 375
Query: 157 IEVKVE 162
E+ V+
Sbjct: 376 AELTVQ 381
Score = 112 bits (282), Expect = 1e-29
Identities = 45/243 (18%), Positives = 63/243 (25%), Gaps = 51/243 (20%)
Query: 12 PPVILN--NSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL------------GRL 57
PV T + V L C A +P T W+ N L G L
Sbjct: 4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDL 63
Query: 58 HLAIP--------YT-----------SPEA--QVDTPPVILNNSPQLSVAKEGQSVQLEC 96
++ P Y S EA + EG V C
Sbjct: 64 VISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTC 123
Query: 97 HA-EGHPIPTISWRRENNAILPNGQ----TIFTGSTLQIPRITKEDRGAYYCVAQNGIGR 151
+P + W T L I + D G Y C A + I
Sbjct: 124 SPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDF 183
Query: 152 GARRKI----------EVKVEFAPIVTVQSTRIGQAL-HHDMDLDCHIEAYPHPILYWAK 200
+ E ++AP + + AL + L+C P P + W K
Sbjct: 184 ITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRK 243
Query: 201 DGE 203
Sbjct: 244 LDG 246
Score = 90.7 bits (225), Expect = 1e-21
Identities = 29/156 (18%), Positives = 46/156 (29%), Gaps = 10/156 (6%)
Query: 73 PPVILNNSPQLSV--AKEGQSVQLECHAEGHPIPTISWRRENNAI--LPNGQTIFTGSTL 128
PV + V L C A +P T W+ + P+ + L
Sbjct: 4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDL 63
Query: 129 QIPRITK-EDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALH-HDMDLDC 186
I K +D G+Y CVA N G R+ ++ F + + + + C
Sbjct: 64 VISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTC 123
Query: 187 HIEA-YPHPILYWAKDGE---IVVNDEYHSISNFGT 218
YP W + I + G
Sbjct: 124 SPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGN 159
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 127 bits (320), Expect = 1e-35
Identities = 46/256 (17%), Positives = 77/256 (30%), Gaps = 51/256 (19%)
Query: 9 VDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRN-------------FKRLG 55
+ PP + G C A G P P ++W + F
Sbjct: 3 GEEPPRFIKEPKDQIGV-SGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESA 61
Query: 56 RLHLAIP----------YT-------------------SPEAQVDTPPVILNNSPQLSVA 86
L I Y + P I PQL V
Sbjct: 62 GAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDM-GPQLKVV 120
Query: 87 KEGQSVQLECHAEGHPIPTISWRRENNAILPNGQ----TIFTGSTLQIPRITKEDRGAYY 142
+ ++ + C A G+P P I+W ++ + P+ LQI + D+G Y
Sbjct: 121 ERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYE 180
Query: 143 CVAQNGIGRGARRKIEVKV---EFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWA 199
CVA N G + V AP ++ ++++ C P P + W
Sbjct: 181 CVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWM 240
Query: 200 KDGEIVVNDEYHSISN 215
+ E + ++ +
Sbjct: 241 QGAEDLTPEDDMPVGR 256
Score = 105 bits (263), Expect = 2e-27
Identities = 39/204 (19%), Positives = 66/204 (32%), Gaps = 42/204 (20%)
Query: 4 SPESQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL------GRL 57
+ P I QL V + ++ + C A G+P P I+W ++F + GR+
Sbjct: 100 REDQLPSGFPNIDM-GPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRI 158
Query: 58 H------LAIP---------YT-----------SPEAQV-----DTPPVILNNSPQLSVA 86
L I Y S A + + P P
Sbjct: 159 KQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSIL-PMSHEI 217
Query: 87 KEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQ 146
G +V + C A G P+P + W + + P + +D Y CVA
Sbjct: 218 MPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDD--MPVGRNVLELTDVKDSANYTCVAM 275
Query: 147 NGIGRGARRKIEVKVEFAPIVTVQ 170
+ +G ++ V+ P +
Sbjct: 276 SSLGV-IEAVAQITVKSLPKAGTK 298
Score = 97.2 bits (242), Expect = 2e-24
Identities = 34/171 (19%), Positives = 57/171 (33%), Gaps = 19/171 (11%)
Query: 70 VDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT----- 124
+ PP + P+ + G C A G P P ++W ++ +
Sbjct: 3 GEEPPRFIK-EPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESA 61
Query: 125 GSTLQIPRI-TKEDRGAYYCVAQNGIGRGARRKIEVKVE-------FAPIVTVQSTRIGQ 176
G+ L+I + T D Y CVAQN +G ++ V P + +
Sbjct: 62 GAVLRIQPLRTPRDENVYECVAQNSVGE-ITVHAKLTVLREDQLPSGFPNIDMGPQLKVV 120
Query: 177 ALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQ 227
+ C P P + W KD V + + +G+LQ
Sbjct: 121 ERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGR----IKQLRSGALQ 167
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 126 bits (318), Expect = 1e-35
Identities = 41/248 (16%), Positives = 78/248 (31%), Gaps = 42/248 (16%)
Query: 12 PPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL------------GRLHL 59
+ + +++ ++ G+S C A G P + +++ R L
Sbjct: 4 LLQVTISLSKVELS-VGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRL 62
Query: 60 AIPYTSPE----------------------AQVDTPPVILNNSPQLSVAKEGQSVQLECH 97
I + E ++ K+G+ ++ C
Sbjct: 63 TIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFRE-VVSPQEFKQGEDAEVVCR 121
Query: 98 AEGHPIPTISWRRENNAILPNGQ---TIFTGSTLQIPRITKEDRGAYYCVAQN-GIGRGA 153
P P +SW N + + + LQI I K D G Y C + G
Sbjct: 122 VSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEID 181
Query: 154 RRKIEVKVEFAPIVTVQSTRIGQALH--HDMDLDCHIEAYPHPILYWAKDGEIVVNDEYH 211
R I V V P +++ +M C P P + W ++G+++ +E +
Sbjct: 182 FRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKY 241
Query: 212 SISNFGTS 219
+ T
Sbjct: 242 ILKGSNTE 249
Score = 111 bits (280), Expect = 6e-30
Identities = 38/195 (19%), Positives = 62/195 (31%), Gaps = 39/195 (20%)
Query: 8 QVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRN-----------FKRLGR 56
++ + +G+ ++ C P P +SW + F L
Sbjct: 94 EIYQKLTFREVVSPQEFK-QGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLAN 152
Query: 57 LHLAIPYTSPE-----------------------AQVDTPPVI-LNNSPQLSVAKEGQSV 92
+L I + V+ PP I + + A+ G+ +
Sbjct: 153 NNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEM 212
Query: 93 QLECHAEGHPIPTISWRRENNAILPNGQTIFT--GSTLQIPRITKEDRGAYYCVAQNGIG 150
C A G P P ISW R I N + I + L + I D G Y C A N G
Sbjct: 213 TFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAG 272
Query: 151 RGARRKIEVKVEFAP 165
++ ++V
Sbjct: 273 E-DEKQAFLQVFVQH 286
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 125 bits (315), Expect = 3e-34
Identities = 39/263 (14%), Positives = 75/263 (28%), Gaps = 61/263 (23%)
Query: 8 QVDTPPVILNNSTQLSVAKEGQSVQLECH-AEGHPIPTISWRRNFKRL------------ 54
+ T EG+ QL+C +P P I+W++
Sbjct: 96 RKTYLIAS-PAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRR 154
Query: 55 ------GRLHLA---------------------------------IPYTSPEAQVDTPPV 75
G L+ T + PV
Sbjct: 155 ITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPV 214
Query: 76 ILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNG------QTIFTGSTLQ 129
+ +AK G + C +P+ ++ + + N +G L
Sbjct: 215 PQY-VSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLL 273
Query: 130 IPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQA-LHHDMDLDCHI 188
ED G Y C NG+G+ + +++ V AP + ++ D+ + C +
Sbjct: 274 FKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKV 333
Query: 189 EAYPHPILYWAKDGEIVVNDEYH 211
P P + W+ + + +
Sbjct: 334 TGLPAPNVVWSHNAKPLSGGRAT 356
Score = 120 bits (303), Expect = 2e-32
Identities = 49/271 (18%), Positives = 82/271 (30%), Gaps = 58/271 (21%)
Query: 9 VDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPT-ISWRRNFKRL------------- 54
VD PV+ + ++ +E LEC EG+ SW+++ K
Sbjct: 3 VDKYPVLKDQPAEVLF-RENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDE 61
Query: 55 GRLHLAIP-------YT-----------SPEA--QVDTPPVILNNSPQLSVAKEGQSVQL 94
G L P Y S + EG+ QL
Sbjct: 62 GSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIAS-PAKTHEKTPIEGRPFQL 120
Query: 95 ECH-AEGHPIPTISWRRENNAILPNGQ--------TIFTGSTLQIPRITKEDR---GAYY 142
+C +P P I+W++ + PN T L +TKED Y
Sbjct: 121 DCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYV 180
Query: 143 CVAQNGIGRGARRKIEVKVE----------FAPIVTVQSTRIGQALHHDMDLDCHIEAYP 192
C A+N +E +++ P+ S + + C + P
Sbjct: 181 CTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNP 240
Query: 193 HPILYWAKDGEIVVNDEYHSISNFGTSEGTT 223
+ K+G+ V + I+ + G
Sbjct: 241 MGYPNYFKNGKDVNGNPEDRITRHNRTSGKR 271
Score = 117 bits (295), Expect = 2e-31
Identities = 43/197 (21%), Positives = 62/197 (31%), Gaps = 39/197 (19%)
Query: 1 PYTSPESQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRN---------- 50
T S PV S + K G + C +P+ ++ +N
Sbjct: 201 GVTKDNSGYKGEPVPQYVSKDMMA-KAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPED 259
Query: 51 ----FKRLGRLHLAIPYTSPEAQ----------------------VDTPPVILNNSPQLS 84
R L T PE + V + P ++
Sbjct: 260 RITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVI 319
Query: 85 VAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCV 144
V K+GQ V + C G P P + W N L G+ T S L I + D+G Y C
Sbjct: 320 VVKQGQDVTIPCKVTGLPAPNVVWSH-NAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCR 378
Query: 145 AQNGIGRGARRKIEVKV 161
A N G + V+V
Sbjct: 379 ATNEHGD-KYFETLVQV 394
Score = 106 bits (265), Expect = 4e-27
Identities = 35/163 (21%), Positives = 59/163 (36%), Gaps = 6/163 (3%)
Query: 70 VDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPT-ISWRRENNAILPNGQTIFT---G 125
VD PV+ + P + +E LEC EG+ SW+++ +
Sbjct: 3 VDKYPVLKD-QPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDE 61
Query: 126 STLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLD 185
+L R D G Y C A+ G + R I + + ++ LD
Sbjct: 62 GSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLD 121
Query: 186 CHI-EAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQ 227
C + AYP P++ W K + + + + G G+L
Sbjct: 122 CVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLY 164
Score = 33.0 bits (75), Expect = 0.072
Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 159 VKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILY-WAKDGEIVVNDEYHSISNFG 217
+ V+ P++ Q + ++ L+C IE + Y W KDG+ E+++
Sbjct: 1 LPVDKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKD 60
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 119 bits (300), Expect = 7e-34
Identities = 34/153 (22%), Positives = 52/153 (33%), Gaps = 4/153 (2%)
Query: 69 QVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF---TG 125
++ PVI + A + C E +P P ISW R I G
Sbjct: 3 KLPKAPVITT-PLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENG 61
Query: 126 STLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLD 185
L I + D G Y C A NG+G ++V+ P +T + L
Sbjct: 62 QLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLP 121
Query: 186 CHIEAYPHPILYWAKDGEIVVNDEYHSISNFGT 218
C P P + W K + + ++ G+
Sbjct: 122 CTTMGNPKPSVSWIKGDSALRENSRIAVLESGS 154
Score = 118 bits (298), Expect = 1e-33
Identities = 45/189 (23%), Positives = 69/189 (36%), Gaps = 36/189 (19%)
Query: 8 QVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL----GRLH----- 58
++ PVI + + C E +P P ISW RN + R
Sbjct: 3 KLPKAPVITTPLETVDAL-VEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENG 61
Query: 59 --LAIPYTSPE----------------------AQVDTPPVILNNSPQLSVAKEGQSVQL 94
L I QV P I P EG L
Sbjct: 62 QLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRP-PINVKIIEGLKAVL 120
Query: 95 ECHAEGHPIPTISWRRENNAILPNG-QTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGA 153
C G+P P++SW + ++A+ N + +L+I + KED G Y CVA+N +G
Sbjct: 121 PCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAY 180
Query: 154 RRKIEVKVE 162
+ ++++VE
Sbjct: 181 SKLVKLEVE 189
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 115 bits (290), Expect = 2e-32
Identities = 38/188 (20%), Positives = 61/188 (32%), Gaps = 39/188 (20%)
Query: 11 TPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRN-----------FKRLGRLHL 59
+ + +G+ ++ C P P +SW + F L +L
Sbjct: 1 SMLTFREVVSPQEFK-QGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNL 59
Query: 60 AIPYTSPE-----------------------AQVDTPPVI-LNNSPQLSVAKEGQSVQLE 95
I + V+ PP I + + A+ G+ +
Sbjct: 60 QILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFS 119
Query: 96 CHAEGHPIPTISWRRENNAILPNGQTIFT--GSTLQIPRITKEDRGAYYCVAQNGIGRGA 153
C A G P P ISW R I N + I + L + I D G Y C A N G
Sbjct: 120 CRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGE-D 178
Query: 154 RRKIEVKV 161
++ ++V
Sbjct: 179 EKQAFLQV 186
Score = 115 bits (290), Expect = 2e-32
Identities = 31/154 (20%), Positives = 53/154 (34%), Gaps = 7/154 (4%)
Query: 72 TPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT---GSTL 128
+ K+G+ ++ C P P +SW N + F + L
Sbjct: 1 SMLTFREV-VSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNL 59
Query: 129 QIPRITKEDRGAYYCVAQN-GIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMD--LD 185
QI I K D G Y C + G R I V V P +++ +
Sbjct: 60 QILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFS 119
Query: 186 CHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTS 219
C P P + W ++G+++ +E + + T
Sbjct: 120 CRASGSPEPAISWFRNGKLIEENEKYILKGSNTE 153
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 116 bits (291), Expect = 2e-32
Identities = 32/173 (18%), Positives = 58/173 (33%), Gaps = 17/173 (9%)
Query: 72 TPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILP------------NG 119
V +++S E V+L C G P + W+ +
Sbjct: 2 MGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYED 61
Query: 120 QTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRG-ARRKIEVKVEFAPIVTVQSTRIGQAL 178
+ F + + +T+ED G Y C+ G K+++ V P + +
Sbjct: 62 RVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATI 121
Query: 179 HHDMDLDC-HIEAYPHPILYWAKDGEIVVNDEYHSISNFGTS---EGTTGSLQ 227
+ L C + P W KDG ++ + + + +S TTG L
Sbjct: 122 GNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELV 174
Score = 104 bits (261), Expect = 5e-28
Identities = 36/207 (17%), Positives = 56/207 (27%), Gaps = 57/207 (27%)
Query: 11 TPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRLGRL------------- 57
V +++S E V+L C G P + W+ + RL
Sbjct: 2 MGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYED 61
Query: 58 -------HLAIPYTSPE--------AQ---------------VDTPPVILNNSPQLSVAK 87
+ + E V PP S A
Sbjct: 62 RVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSK-PTVNIPSSAT 120
Query: 88 EGQSVQLECHA-EGHPIPTISWRRENNAILPNGQ-----------TIFTGSTLQIPRITK 135
G L C +G P +W ++ + N + T L ++
Sbjct: 121 IGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSA 180
Query: 136 EDRGAYYCVAQNGIGRGARRKIEVKVE 162
D G Y C A+NG G V++E
Sbjct: 181 SDTGEYSCEARNGYGT-PMTSNAVRME 206
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 114 bits (286), Expect = 7e-32
Identities = 32/159 (20%), Positives = 56/159 (35%), Gaps = 7/159 (4%)
Query: 72 TPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTIS--WRRENNAILPNGQTIFTGSTLQ 129
P I+ S ++ + V L+C+ + W + N L + + +
Sbjct: 2 NEPRIVT-SEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTK-NGVELTATRKNASNMEYR 59
Query: 130 IPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIE 189
I + ED G Y+CV + ++V+ AP +T + D + C
Sbjct: 60 INKPRAEDSGEYHCVYHFV--SAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSV 117
Query: 190 AYPHPILYWAKDGEIVVNDEYHSISNFG-TSEGTTGSLQ 227
YPHP W K V + +S F ++ L
Sbjct: 118 GYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELN 156
Score = 98.4 bits (245), Expect = 9e-26
Identities = 38/191 (19%), Positives = 59/191 (30%), Gaps = 42/191 (21%)
Query: 11 TPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTIS--WRRNFKRL--GRLH-----LAI 61
P I+ S ++ + V L+C+ + W +N L R + I
Sbjct: 2 NEPRIVT-SEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNMEYRI 60
Query: 62 PYTSPE--------------------AQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGH 101
E +V P I + EGQ + C + G+
Sbjct: 61 NKPRAEDSGEYHCVYHFVSAPKANATIEVKAAPDITG-HKRSENKNEGQDAMMYCKSVGY 119
Query: 102 PIPTISWRRENNAILPNGQTIF---------TGSTLQIPRI-TKEDRGAYYCVAQNGIGR 151
P P WR++ N + + L I + ED G Y C A N IG
Sbjct: 120 PHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGS 179
Query: 152 G-ARRKIEVKV 161
+ V+V
Sbjct: 180 ASVSTVLRVRV 190
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 115 bits (288), Expect = 4e-31
Identities = 40/253 (15%), Positives = 68/253 (26%), Gaps = 41/253 (16%)
Query: 10 DTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRLGRLH-------LAIP 62
D PVI + +L V + G++V L C + G ++ W L L
Sbjct: 2 DPAPVIEPSGPELVV-EPGETVTLRCVSNG----SVEWDGPISPYWTLDPESPGSTLTTR 56
Query: 63 YTSPE---------------------AQVDTPPVILNNSPQLSVAKEGQSVQLECHAEG- 100
+ + V P N Q EGQ L C
Sbjct: 57 NATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDP 116
Query: 101 HPIPTISWRRENNAILPNGQTIF--TGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIE 158
++S RE + F I + D Y C I
Sbjct: 117 ALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIW 176
Query: 159 VKVE----FAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSIS 214
+KV P + ++ +++ + + C K G+ + +S
Sbjct: 177 LKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDF 236
Query: 215 NFGTSEGTTGSLQ 227
+ +L
Sbjct: 237 QDNYYKK-VRALS 248
Score = 91.9 bits (228), Expect = 2e-22
Identities = 32/206 (15%), Positives = 48/206 (23%), Gaps = 46/206 (22%)
Query: 9 VDTPPVILNNSTQLSVAKEGQSVQLECHAEG-HPIPTISWRRN----------FKRLGRL 57
V P N Q EGQ L C ++S R +
Sbjct: 85 VKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWR 144
Query: 58 HLAIPYTSPE--------------------------AQVDTPPVILNNSPQLSVAKEGQS 91
I PP I P V G++
Sbjct: 145 GFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKL-EPSKLVRIRGEA 203
Query: 92 VQLECHAEGHPIPTISWRRENNAILP-------NGQTIFTGSTLQIPRITKEDRGAYYCV 144
Q+ C A + + + L L + + +D G Y CV
Sbjct: 204 AQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCV 263
Query: 145 AQNGIGRGARRKIEVKVEFAPIVTVQ 170
A N +G + +V +
Sbjct: 264 ASNDVGT-RTATMNFQVVESHHHHHH 288
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 111 bits (280), Expect = 4e-31
Identities = 28/147 (19%), Positives = 51/147 (34%), Gaps = 8/147 (5%)
Query: 73 PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT------GS 126
++ +P +GQ V+L C EG P I W ++ + Q
Sbjct: 2 GLKLMG-APVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIG 60
Query: 127 TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDC 186
L + + + D G Y+C ++G + + + VE P TV+ + + L C
Sbjct: 61 FLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSC 120
Query: 187 HIEAYPHPILY-WAKDGEIVVNDEYHS 212
P P+ W + +
Sbjct: 121 EAVGPPEPVTIVWWRGTTKIGGPAPSP 147
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 116 bits (292), Expect = 6e-31
Identities = 44/278 (15%), Positives = 74/278 (26%), Gaps = 59/278 (21%)
Query: 8 QVDTPPVILNNSTQLSVAKEGQSVQLECHAEGH---PIPTISWRRNFKRL---------- 54
+ + + V G S ++C + +SW + +
Sbjct: 99 RAVVAQYYEADVNKEHVI-RGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGK 157
Query: 55 ------GRLHLA---------------------IPYTSPEAQV--------DTPPVILNN 79
G LH+ S + P
Sbjct: 158 YLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPAL 217
Query: 80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRE------NNAILPNGQTIFTGSTLQIPRI 133
+ ++ L C A+G P P+ W + A++ N + TL I
Sbjct: 218 VQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDA 277
Query: 134 TKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPH 193
ED G Y CV N +G + + V + C P
Sbjct: 278 VVEDSGKYLCVVNNSVGG-ESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPI 336
Query: 194 PILYWAKDGEIVVNDEYH-SISNFGTSEGTTGSLQCKV 230
+ W KDG+ + + E I + + G QC V
Sbjct: 337 KTVSWMKDGKAIGHSESVLRIESVKKED--KGMYQCFV 372
Score = 109 bits (274), Expect = 2e-28
Identities = 42/270 (15%), Positives = 70/270 (25%), Gaps = 59/270 (21%)
Query: 12 PPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL-------------GRLH 58
PV L T ++EC A G+P+P I W R+ G+L
Sbjct: 3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLV 62
Query: 59 LAIP-------------YT-----------SPEAQVD--TPPVILNNSPQLSVAKEGQSV 92
Y S + V G S
Sbjct: 63 FPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYY-EADVNKEHVIRGNSA 121
Query: 93 QLECHAEGH---PIPTISWRRENNAILPNGQ------TIFTGSTLQIPRITKED-RGAYY 142
++C + +SW + G + L I + ED +Y
Sbjct: 122 VIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQ 181
Query: 143 CVAQNGIGRGARRKIEVKV--------EFAPIVTVQSTRIGQAL-HHDMDLDCHIEAYPH 193
C ++ + R AP + + + H + L C + +P
Sbjct: 182 CRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPA 241
Query: 194 PILYWAKDGEIVVNDEYHSISNFGTSEGTT 223
P W K E + +++ T
Sbjct: 242 PSFRWYKFIEGTTRKQAVVLNDRVKQVSGT 271
Score = 99.2 bits (247), Expect = 1e-24
Identities = 32/167 (19%), Positives = 54/167 (32%), Gaps = 14/167 (8%)
Query: 73 PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNG---QTIFTGSTLQ 129
PV L ++EC A G+P+P I W R + + + + I + L
Sbjct: 3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLV 62
Query: 130 IPRITKED------RGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMD 183
P ED Y C+A+N G R + V+ A + +
Sbjct: 63 FPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAV 122
Query: 184 LDCHIEAY---PHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQ 227
+ C I ++ ++ W D E + +G L
Sbjct: 123 IKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKY--LVLPSGELH 167
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 116 bits (292), Expect = 7e-31
Identities = 35/267 (13%), Positives = 71/267 (26%), Gaps = 49/267 (18%)
Query: 8 QVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRN-----------FKRLGR 56
+ + + L C +E P P + W + +
Sbjct: 136 SIRNTLLYTLRRPYFRKMEN--QDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKK 193
Query: 57 LHLAIP------YT-----------SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHA- 98
+ + +D PQL + K G+ + + C A
Sbjct: 194 EEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFL-KVGEPLWIRCKAV 252
Query: 99 EGHPIPTISWRRENNAILP----------NGQTIFTGSTLQIPRITKEDRGAYYCVAQNG 148
+ ++W EN A+ +T+ + + + D G Y C +
Sbjct: 253 HVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH 312
Query: 149 IGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVND 208
+ A + + + T S + + +AYP W + +
Sbjct: 313 PSQSAL--VTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCE 370
Query: 209 EY-----HSISNFGTSEGTTGSLQCKV 230
+ +SIS F + G
Sbjct: 371 QKGLDNGYSISKFCNHKHQPGEYIFHA 397
Score = 107 bits (268), Expect = 2e-27
Identities = 26/244 (10%), Positives = 64/244 (26%), Gaps = 39/244 (15%)
Query: 9 VDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRN-----------FKRLGRL 57
+ + + S+ L+ + + W + G +
Sbjct: 46 PQSSGTVYEAAAV--EVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVV 103
Query: 58 HLAIPYTSPE---------------------AQVDTPPVILNNSPQLSVAKEGQSVQLEC 96
+ I + + + P + L C
Sbjct: 104 SMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMEN--QDALVC 161
Query: 97 HAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRK 156
+E P P + W ++ + + + + C A+N +GR R
Sbjct: 162 ISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRL 221
Query: 157 IEVKVEFAPIVTVQSTRIGQALHHDMDLDCH-IEAYPHPILYWAKDGEIVVNDEYHSISN 215
+ + P T+ + + + + C + L W + + + Y +S
Sbjct: 222 FTIDLNQTPQTTLPQLFL--KVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMST 279
Query: 216 FGTS 219
+ T+
Sbjct: 280 YSTN 283
Score = 97.4 bits (242), Expect = 7e-24
Identities = 23/195 (11%), Positives = 51/195 (26%), Gaps = 40/195 (20%)
Query: 9 VDTPPVILNNSTQLSVAKEGQSVQLECHA-EGHPIPTISWRRNFKRL------------- 54
+D QL + K G+ + + C A + ++W K L
Sbjct: 224 IDLNQTPQTTLPQLFL-KVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYST 282
Query: 55 -----GRLHLAIPYTSPE----------------AQV---DTPPVILNNSPQLSVAKEGQ 90
L + + A V + + NS + + +
Sbjct: 283 NRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSALVTIVEKGFINATNSSEDYEIDQYE 342
Query: 91 SVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIG 150
+ +P +W + + + G ++ K G Y A+N
Sbjct: 343 EFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDA 402
Query: 151 RGARRKIEVKVEFAP 165
+ + + +
Sbjct: 403 Q-FTKMFTLNIRSGT 416
Score = 43.5 bits (102), Expect = 3e-05
Identities = 8/85 (9%), Positives = 26/85 (30%), Gaps = 5/85 (5%)
Query: 136 EDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPI 195
+Y V+++ G + + + ++ + + + L ++A +
Sbjct: 25 GKSSSYPMVSESPEDLGCALRPQ-----SSGTVYEAAAVEVDVSASITLQVLVDAPGNIS 79
Query: 196 LYWAKDGEIVVNDEYHSISNFGTSE 220
W + + + N G
Sbjct: 80 CLWVFKHSSLNCQPHFDLQNRGVVS 104
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 111 bits (278), Expect = 1e-30
Identities = 44/193 (22%), Positives = 66/193 (34%), Gaps = 45/193 (23%)
Query: 12 PPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL----------GRLHLAI 61
P + + + + A+ G+ + C A G P P ISW RN K + L +
Sbjct: 3 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTV 62
Query: 62 PYTSPE--------A-------------QVDTPPVILNNSPQLSVAKEGQSVQLECHAEG 100
A QV P I+ + E V L C AEG
Sbjct: 63 RNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHII--QLKNETTYENGQVTLVCDAEG 120
Query: 101 HPIPTISWRRENNAILPNGQTIFTG-----------STLQIPRITKEDRGAYYCVAQNGI 149
PIP I+W+R + S+L I + D G Y C A + I
Sbjct: 121 EPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRI 180
Query: 150 GRGARRKIEVKVE 162
G ++ + + +E
Sbjct: 181 GG-HQKSMYLDIE 192
Score = 109 bits (275), Expect = 3e-30
Identities = 35/161 (21%), Positives = 60/161 (37%), Gaps = 9/161 (5%)
Query: 73 PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNG--QTIFTGSTLQI 130
P + + + A+ G+ + C A G P P ISW R I N + + L +
Sbjct: 3 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTV 62
Query: 131 PRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAP-IVTVQSTRIGQALHHDMDLDCHIE 189
I D G Y C A N G ++ ++V P I+ +++ + + L C E
Sbjct: 63 RNIINSDGGPYVCRATNKAGE-DEKQAFLQVFVQPHIIQLKNETT--YENGQVTLVCDAE 119
Query: 190 AYPHPILYWAKDGEIVVNDEYHSISN---FGTSEGTTGSLQ 227
P P + W + + E + + + SL
Sbjct: 120 GEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLH 160
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 113 bits (284), Expect = 1e-30
Identities = 38/253 (15%), Positives = 66/253 (26%), Gaps = 41/253 (16%)
Query: 10 DTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRN-------FKRLGRLHLAIP 62
+ PVI + +L V G +V L C G ++ W + L+
Sbjct: 2 GSIPVIEPSVPELVVK-PGATVTLRCVGNG----SVEWDGPPSPHWTLYSDGSSSILSTN 56
Query: 63 YTSPE---------------------AQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGH 101
+ + V P N Q V E Q L C
Sbjct: 57 NATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDP 116
Query: 102 PI-PTISWRRENNAILPNG--QTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIE 158
+ +S R L + I R Y C A G + I
Sbjct: 117 VLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIR 176
Query: 159 VKVE----FAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSIS 214
+KV+ P +T+ + + + C + + + + S
Sbjct: 177 LKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDF 236
Query: 215 NFGTSEGTTGSLQ 227
+ + +L
Sbjct: 237 HNNRYQ-KVLTLN 248
Score = 90.0 bits (223), Expect = 8e-22
Identities = 38/216 (17%), Positives = 57/216 (26%), Gaps = 52/216 (24%)
Query: 9 VDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPI-PTISWRRNFKRLGRLH--------- 58
V P N Q V E Q L C + +S R R H
Sbjct: 85 VKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWH 144
Query: 59 -LAIPYTSPE--------------------------AQVDTPPVILNNSPQLSVAKEGQS 91
I + PP + P V G++
Sbjct: 145 GFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTL-VPAELVRIRGEA 203
Query: 92 VQLECHAEGHPIPTISWRRENNAILPNGQT-------IFTGSTLQIPRITKEDRGAYYCV 144
Q+ C A + + + NN L Q TL + ++ + G Y CV
Sbjct: 204 AQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCV 263
Query: 145 AQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHH 180
A N G+ + +V + + HH
Sbjct: 264 ASNVQGK-HSTSMFFRVVESAGNSHHHH------HH 292
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 110 bits (276), Expect = 5e-30
Identities = 39/197 (19%), Positives = 61/197 (30%), Gaps = 47/197 (23%)
Query: 12 PPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL---GRLHLAIP------ 62
I N +V GQ V+L C A GHP W + K + L
Sbjct: 18 GSKITVNPESKAVL-AGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTSELIFNAVHVKD 76
Query: 63 ---YT-----------SPEAQVD-----------------TPPVILNNSPQLSVAKEGQS 91
Y S +Q+D + I P G +
Sbjct: 77 AGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVE-PTSQKLMPGST 135
Query: 92 VQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGR 151
+ L+C A G PIP W + + T +P + E +G Y+C N
Sbjct: 136 LVLQCVAVGSPIPHYQWFKNELPLTHE-----TKKLYMVPYVDLEHQGTYWCHVYNDRDS 190
Query: 152 GARRKIEVKVEFAPIVT 168
+K+E+ ++ +
Sbjct: 191 QDSKKVEIIIDELNNLG 207
Score = 94.9 bits (236), Expect = 4e-24
Identities = 36/173 (20%), Positives = 52/173 (30%), Gaps = 21/173 (12%)
Query: 73 PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPR 132
I +P+ GQ V+L C A GHP W + N I PNG S L
Sbjct: 18 GSKITV-NPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEI-PNG----NTSELIFNA 71
Query: 133 ITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALH------------- 179
+ +D G Y C N + ++ V P +S
Sbjct: 72 VHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLM 131
Query: 180 --HDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQCKV 230
+ L C P P W K+ + ++ G+ C V
Sbjct: 132 PGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQGTYWCHV 184
Score = 51.4 bits (123), Expect = 3e-08
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 3 TSPESQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL---GRLHL 59
S + ++ I T + G ++ L+C A G PIP W +N L +
Sbjct: 109 RSVDGVSESKLQICVEPTSQKLM-PGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLY 167
Query: 60 AIPYTSPE 67
+PY E
Sbjct: 168 MVPYVDLE 175
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 110 bits (275), Expect = 5e-30
Identities = 31/172 (18%), Positives = 56/172 (32%), Gaps = 19/172 (11%)
Query: 74 PVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILP------------NGQT 121
+ + V E +S++L C G P + W+ + +
Sbjct: 2 GSVYTAQSDVQVP-ENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRV 60
Query: 122 IFTGSTLQIPRITKEDRGAYYCVAQNGIGRG-ARRKIEVKVEFAPIVTVQSTRIGQALHH 180
F+ S + +T++D G Y C+ G+ I + V P S + +
Sbjct: 61 TFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGN 120
Query: 181 DMDLDCH-IEAYPHPILYWAKDGEIVVNDEYHSISNFGTS----EGTTGSLQ 227
L C + P W KDG ++ + F S + +G L
Sbjct: 121 RAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLI 172
Score = 97.7 bits (243), Expect = 2e-25
Identities = 34/209 (16%), Positives = 54/209 (25%), Gaps = 59/209 (28%)
Query: 13 PVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRR--------------------NFK 52
+ + + V E +S++L C G P + W+ +
Sbjct: 2 GSVYTAQSDVQVP-ENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRV 60
Query: 53 RLGRLHLAIPYTSPE--------AQ---------------VDTPPVILNNSPQLSVAKEG 89
+ + + V PP S G
Sbjct: 61 TFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPT-ISVPSSVTIG 119
Query: 90 QSVQLECHA-EGHPIPTISWRRENNAILPNGQTIFT------------GSTLQIPRITKE 136
L C +G P SW ++ ++L L +T
Sbjct: 120 NRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAF 179
Query: 137 DRGAYYCVAQNGIGRGARRKIEVKVEFAP 165
D G YYC AQNG G A R ++
Sbjct: 180 DSGEYYCQAQNGYGT-AMRSEAAHMDAVE 207
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 113 bits (283), Expect = 5e-30
Identities = 37/224 (16%), Positives = 67/224 (29%), Gaps = 52/224 (23%)
Query: 24 VAKEGQSVQLECHAEGHPIPTISWRRN-----------------------------FKRL 54
+ K+G +V+L C A W+ +
Sbjct: 5 LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQ 64
Query: 55 GRLHLAIPYTSPE-------------AQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGH 101
G L I E +V L + + +GQS+ L +
Sbjct: 65 GNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHL-LQGQSLTLTLESPPG 123
Query: 102 PIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161
P++ R P G+ I G TL + ++ +D G + C KI++ V
Sbjct: 124 SSPSVQCRS------PRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQK-KVEFKIDIVV 176
Query: 162 -EFAPIVTVQSTRIGQALHHDMDLDCHIEA-YPHPILYWAKDGE 203
F ++ + G+ + L +E L+W +
Sbjct: 177 LAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERA 220
Score = 76.8 bits (188), Expect = 1e-16
Identities = 28/168 (16%), Positives = 50/168 (29%), Gaps = 33/168 (19%)
Query: 85 VAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT-------------------- 124
+ K+G +V+L C A W+ N + Q F
Sbjct: 5 LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQ 64
Query: 125 -GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMD 183
L I + ED Y C ++ +++ V + GQ+L
Sbjct: 65 GNFPLIIKNLKIEDSDTYICEVEDQKEE-----VQLLVFGLTANSDTHLLQGQSL----T 115
Query: 184 LDCHIEAYPHPILYWAK-DGEIVVNDEYHSISNFGTSEGTTGSLQCKV 230
L P + G+ + + S+S + +G+ C V
Sbjct: 116 LTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQD--SGTWTCTV 161
Score = 69.8 bits (170), Expect = 3e-14
Identities = 33/258 (12%), Positives = 65/258 (25%), Gaps = 66/258 (25%)
Query: 23 SVAKEGQSVQLECHAEGHPIPTISWRRNFKRL----GRLHLA------------------ 60
+ +GQS+ L + P++ R + L ++
Sbjct: 106 THLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQ 165
Query: 61 --------------IPYTSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIP-- 104
+S + + V + +V K S +L AE
Sbjct: 166 KKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKS 225
Query: 105 --TISW--------RRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGAR 154
T R + L G+ + TL G + G+
Sbjct: 226 WITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGK-LH 284
Query: 155 RKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHP--ILYWAKDGEIVVNDEYHS 212
+++ + V +A +L C + P +L + + +
Sbjct: 285 QEVNLVVM-------------RATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREK 331
Query: 213 ISNFGTSEGTTGSLQCKV 230
E G QC +
Sbjct: 332 AVWVLNPE--AGMWQCLL 347
Score = 58.3 bits (140), Expect = 3e-10
Identities = 25/192 (13%), Positives = 52/192 (27%), Gaps = 36/192 (18%)
Query: 1 PYTSPESQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIP----TISW--------- 47
+S + + V + +V K S +L AE T
Sbjct: 181 KASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKR 240
Query: 48 -----RRNFKRLGRLHLAIPYTSPEA--------QVDTPPVILNNSPQLSVAK-EGQSVQ 93
+ + LHL +P P+ ++ L+ L V +
Sbjct: 241 VTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRATQLQKN 300
Query: 94 LECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGA 153
L C G P + + + + + + G + C+ +
Sbjct: 301 LTCEVWGPTSPKLMLSLK-----LENKEAKVSKREKAVWVLNPEAGMWQCLLSD----SG 351
Query: 154 RRKIEVKVEFAP 165
+ +E ++ P
Sbjct: 352 QVLLESNIKVLP 363
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 110 bits (276), Expect = 4e-29
Identities = 45/262 (17%), Positives = 75/262 (28%), Gaps = 65/262 (24%)
Query: 7 SQVDTPPVILNNSTQLSVAKEGQSVQLECHAE-GHPIPTISWRRNFKRL--------GRL 57
+ P + V G +V+L C G P+ W ++ L G
Sbjct: 2 GRAAEVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQ 61
Query: 58 HLAIPYTSPE------------------------------------------AQVDTPPV 75
L + S E P
Sbjct: 62 RLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPY 121
Query: 76 IL---NNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNG-----QTIFTGST 127
+L +V+ C A G+P P+ISW + + +
Sbjct: 122 WTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWS 181
Query: 128 LQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV-EFAPIVTVQSTRIGQ----ALHHDM 182
L + + DRG Y CV +N G R+ + V E +P + + L D+
Sbjct: 182 LVMESVVPSDRGNYTCVVENKFGS-IRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDV 240
Query: 183 DLDCHIEAYPHPILYWAKDGEI 204
+ C + + P + W K E+
Sbjct: 241 EFHCKVYSDAQPHIQWLKHVEV 262
Score = 100 bits (249), Expect = 3e-25
Identities = 42/226 (18%), Positives = 66/226 (29%), Gaps = 59/226 (26%)
Query: 3 TSPESQVDTPPVIL---NNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFK------R 53
P +L +V+ C A G+P P+ISW +N + R
Sbjct: 110 AEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHR 169
Query: 54 LGRLH-------LAIPYTSPE-------------------------AQVDTPPVILNNSP 81
+G + L + P + P++ P
Sbjct: 170 IGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLP 229
Query: 82 QLSVAKEGQSVQLECHAEGHPIPTISWRRE----NNAILPNGQTIFT------------- 124
A G V+ C P I W + + + P+G T
Sbjct: 230 ANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKE 289
Query: 125 GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQ 170
L + +T ED G Y C+A N IG + + V A V+
Sbjct: 290 LEVLSLHNVTFEDAGEYTCLAGNSIGF-SHHSAWLVVLPAEEELVE 334
Score = 95.8 bits (238), Expect = 1e-23
Identities = 25/175 (14%), Positives = 50/175 (28%), Gaps = 25/175 (14%)
Query: 73 PPVILNNSPQLSVAKEGQSVQLECHAE-GHPIPTISWRRENNAILPNGQTIFTGSTLQIP 131
P + V G +V+L C G P+ W ++ ++P+ + + LQ+
Sbjct: 7 VPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQVL 66
Query: 132 RITKEDRGAYYCVAQNGIGRGARRKIEVKV------------------------EFAPIV 167
+ ED GAY C + + V +
Sbjct: 67 NASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPE 126
Query: 168 TVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGT 222
+ + + + C P P + W K+G + + +
Sbjct: 127 RMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWS 181
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 107 bits (269), Expect = 5e-29
Identities = 47/205 (22%), Positives = 72/205 (35%), Gaps = 47/205 (22%)
Query: 9 VDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL----GRLHLAIP-- 62
PP I+ V + G C A G P P+I WR+N K++ R +
Sbjct: 3 GAHPPEIIRKPQNQGV-RVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPG 61
Query: 63 ------------------YT-----------SPEAQVD---------TPPVILNNSPQLS 84
Y S +A + PVI P
Sbjct: 62 GISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQG-PGTR 120
Query: 85 VAKEGQSVQLECHAEGHPIPTISWRRENNAILPNG-QTIFTGSTLQIPRITKEDRGAYYC 143
V + G +V + C A G+P P I W + + + + LQI +ED+G Y C
Sbjct: 121 VIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYEC 180
Query: 144 VAQNGIGRGARRKIEVKVEFAPIVT 168
VA+N +G + + V+ + T
Sbjct: 181 VAENSMGTEHSKATNLYVKVRRVGT 205
Score = 102 bits (255), Expect = 5e-27
Identities = 36/163 (22%), Positives = 54/163 (33%), Gaps = 15/163 (9%)
Query: 70 VDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNG---QTIFTGS 126
PP I+ PQ + G C A G P P+I WR+ + +
Sbjct: 3 GAHPPEIIR-KPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPG 61
Query: 127 TLQIPRIT----KEDRGAYYCVAQNGIGRGARRKIEVKV-------EFAPIVTVQSTRIG 175
+ I RI D Y CVA+NG+G + + P++T
Sbjct: 62 GISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRV 121
Query: 176 QALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGT 218
+ H + + C P P +YW K+ V G
Sbjct: 122 IEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGF 164
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 106 bits (266), Expect = 8e-29
Identities = 43/201 (21%), Positives = 68/201 (33%), Gaps = 46/201 (22%)
Query: 6 ESQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIP--TISWRRNFKRL--------- 54
P ++ V KEG+ + L C H + W N +
Sbjct: 2 PGSGYLDPFPPEERPEVRV-KEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRF 60
Query: 55 -----GRLHLA----------------------------IPYTSPEAQVDTPPVILNNSP 81
G L++A PE P +
Sbjct: 61 VSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQF 120
Query: 82 QLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAY 141
+ A GQ+V LEC A G+P+P I WR+ + + +G+ L+I I ED G Y
Sbjct: 121 KDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIY 180
Query: 142 YCVAQNGIGRGARRKIEVKVE 162
C A+N G+ + + + V+
Sbjct: 181 ECEAENIRGK-DKHQARIYVQ 200
Score = 82.2 bits (203), Expect = 1e-19
Identities = 28/158 (17%), Positives = 50/158 (31%), Gaps = 16/158 (10%)
Query: 73 PPVILNNSPQLSVAKEGQSVQLECHAEGHPIP--TISWRRENNAILPNGQ----TIFTGS 126
P P++ V KEG+ + L C H + W + T
Sbjct: 8 DPFPPEERPEVRV-KEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNG 66
Query: 127 TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV---------EFAPIVTVQSTRIGQA 177
L I + D+G Y C + + + + + + VQ +
Sbjct: 67 NLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYAL 126
Query: 178 LHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISN 215
+ ++ L+C P P + W K E + + S S
Sbjct: 127 MGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSG 164
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 106 bits (266), Expect = 1e-28
Identities = 40/181 (22%), Positives = 61/181 (33%), Gaps = 44/181 (24%)
Query: 24 VAKEGQSVQLECHAEGHPIPTISWRRNFKRL--------------GRLHLAIPYTSPE-- 67
V EG + E H G P+P +SW R+ + + GR L IP +
Sbjct: 16 VVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANS 75
Query: 68 ----------------------AQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPT 105
PP + Q ++G V+L+ G P P
Sbjct: 76 GRYSLKATNGSGQATSTAELLVKAETAPPNFVQ-RLQSMTVRQGSQVRLQVRVTGIPTPV 134
Query: 106 ISWRRENNAILPNGQTIFT----GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161
+ + R+ I + + +L I ED G Y A N +GR A E+ V
Sbjct: 135 VKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGR-ATSTAELLV 193
Query: 162 E 162
+
Sbjct: 194 Q 194
Score = 104 bits (261), Expect = 4e-28
Identities = 41/168 (24%), Positives = 62/168 (36%), Gaps = 23/168 (13%)
Query: 73 PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT------GS 126
P Q V EG + E H G P+P +SW R+ I + +
Sbjct: 5 APTFTQ-PLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 127 TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE---FAPIVTV----QSTRIGQALH 179
L IP +TK + G Y A NG G+ A E+ V+ P + R G
Sbjct: 64 KLTIPAVTKANSGRYSLKATNGSGQ-ATSTAELLVKAETAPPNFVQRLQSMTVRQGS--- 119
Query: 180 HDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQ 227
+ L + P P++ + +DG + + I + EG SL
Sbjct: 120 -QVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQI----SQEGDLYSLL 162
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 106 bits (265), Expect = 1e-28
Identities = 29/178 (16%), Positives = 47/178 (26%), Gaps = 41/178 (23%)
Query: 24 VAKEGQSVQLECHAEGHPIPTISWRRNFKRL------------GRLHLAIPYTSPE---- 67
G+S C A G P + +++ R L I + E
Sbjct: 13 ELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGI 72
Query: 68 ------------------AQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWR 109
++ K+G+ ++ C P P +SW
Sbjct: 73 YRCQATDAKGQTQEATVVLEIYQKLTFREV-VSPQEFKQGEDAEVVCRVSSSPAPAVSWL 131
Query: 110 RENNAILPNGQ---TIFTGSTLQIPRITKEDRGAYYCVAQNGIG---RGARRKIEVKV 161
N + + + LQI I K D G Y C + + V V
Sbjct: 132 YHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNV 189
Score = 103 bits (259), Expect = 8e-28
Identities = 26/145 (17%), Positives = 48/145 (33%), Gaps = 6/145 (4%)
Query: 80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF----TGSTLQIPRITK 135
S G+S C A G P + + I+ + + S L I
Sbjct: 8 SLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANI 67
Query: 136 EDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPI 195
ED G Y C A + G+ + +++ + D ++ C + + P P
Sbjct: 68 EDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPA 127
Query: 196 LYWAKDGEIV--VNDEYHSISNFGT 218
+ W E V ++D ++
Sbjct: 128 VSWLYHNEEVTTISDNRFAMLANNN 152
Score = 37.8 bits (88), Expect = 0.001
Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 4/64 (6%)
Query: 164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTT 223
VT+ +++ ++ C P I ++ GE +++ + + EG
Sbjct: 2 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQK----EGVR 57
Query: 224 GSLQ 227
L
Sbjct: 58 SRLT 61
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 106 bits (266), Expect = 1e-28
Identities = 39/203 (19%), Positives = 61/203 (30%), Gaps = 51/203 (25%)
Query: 9 VDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL--GRLHLAIP---- 62
+TPP + G C A G P P I W + K++ R +
Sbjct: 3 GETPPRFTRTPVDQTG-VSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGS 61
Query: 63 -----------------YT-------------------SPEAQVDTPPVILNNSPQLSVA 86
Y + P I PQL V
Sbjct: 62 GSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDM-GPQLKVV 120
Query: 87 KEGQSVQLECHAEGHPIPTISWRRENNAILPNGQ-------TIFTGSTLQIPRITKEDRG 139
+ ++ + C A G+P P I+W ++ + + + LQI + + D+G
Sbjct: 121 ERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQG 180
Query: 140 AYYCVAQNGIGRGARRKIEVKVE 162
Y CVA N G + V
Sbjct: 181 KYECVATNSAGTRYSAPANLYVR 203
Score = 97.2 bits (242), Expect = 4e-25
Identities = 37/171 (21%), Positives = 53/171 (30%), Gaps = 16/171 (9%)
Query: 70 VDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF-----T 124
+TPP +P G C A G P P I W ++ + + +
Sbjct: 3 GETPPRFTR-TPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGS 61
Query: 125 GSTLQI-PRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALH---- 179
GS L+I P T D Y CVA N +G + V + I
Sbjct: 62 GSVLRIQPLRTPRDEAIYECVASNNVGE-ISVSTRLTVLREDQIPRGFPTIDMGPQLKVV 120
Query: 180 ---HDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQ 227
+ C P P + W KD V + + G+LQ
Sbjct: 121 ERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQ-LRSESIGALQ 170
Score = 49.4 bits (118), Expect = 1e-07
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 3 TSPESQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL 54
+ P I QL V + ++ + C A G+P P I+W ++F +
Sbjct: 99 LREDQIPRGFPTIDM-GPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPV 149
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 112 bits (280), Expect = 1e-28
Identities = 47/248 (18%), Positives = 79/248 (31%), Gaps = 52/248 (20%)
Query: 12 PPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFK------------------- 52
V+L+ S + + G+ + L C A I + +
Sbjct: 224 YDVVLSPSHGIEL-SVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSG 282
Query: 53 ---RLGRLHLAIP---------YT------------SPEAQVDTPPVI--LNNSPQLSVA 86
+ L I YT S +V P + + L A
Sbjct: 283 SEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEA 342
Query: 87 KEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQ 146
G+ V++ G+P P I W + N L + TI G L I +++ D G Y +
Sbjct: 343 TVGERVRIPAKYLGYPPPEIKWYK-NGIPLESNHTIKAGHVLTIMEVSERDTGNYTVILT 401
Query: 147 NGIGRG-ARRKIEVKVEFAPIV---TVQSTRIGQALHHDMDLDCHIEAYPHPI-LYWAKD 201
N I + + + V P + ++ S L C + A P P ++W
Sbjct: 402 NPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQ 461
Query: 202 GEIVVNDE 209
E +E
Sbjct: 462 LEEECANE 469
Score = 102 bits (254), Expect = 4e-25
Identities = 32/256 (12%), Positives = 65/256 (25%), Gaps = 53/256 (20%)
Query: 12 PPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRN-----------FKRLGRLHLA 60
V + + ++V + C + R +
Sbjct: 127 ASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFT 186
Query: 61 IPYTSPE------------------------AQVDTPPVILNNSPQLSVAKEGQSVQLEC 96
IP ++ + G+ + L C
Sbjct: 187 IPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNC 246
Query: 97 HAEGHPIPTISW--------------RRENNAILPNGQTIFTGSTLQIPRITKEDRGAYY 142
A I + + + STL I +T+ D+G Y
Sbjct: 247 TARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYT 306
Query: 143 CVAQNGIGRGARRKIEVKVEFAPIVTV---QSTRIGQALHHDMDLDCHIEAYPHPILYWA 199
C A +G+ + V+V P V + + + + + YP P + W
Sbjct: 307 CAASSGLMT-KKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWY 365
Query: 200 KDGEIVVNDEYHSISN 215
K+G + ++ +
Sbjct: 366 KNGIPLESNHTIKAGH 381
Score = 100 bits (251), Expect = 1e-24
Identities = 49/278 (17%), Positives = 71/278 (25%), Gaps = 74/278 (26%)
Query: 8 QVDTPPVILNNSTQLSV--AKEGQSVQLECHAEGHPIPTISWRRNFKRLGRLH------- 58
+V P + S S+ A G+ V++ G+P P I W +N L H
Sbjct: 323 RVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHV 382
Query: 59 LAIPYTSPE--------A---------------QVDTPPVILNNS--PQLSVAKEGQSVQ 93
L I S V PP I S + + G +
Sbjct: 383 LTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQT 442
Query: 94 LECHAEGHPIP-TISWRRENNAILPNGQTIF----------------------------- 123
L C P P I W + N +
Sbjct: 443 LTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKN 502
Query: 124 --------TGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIG 175
+ + Y C A N +GR R I V P +T+Q
Sbjct: 503 QFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGR-GERVISFHVTRGPEITLQPDMQ- 560
Query: 176 QALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSI 213
+ L C + L W K G + +
Sbjct: 561 PTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGEL 598
Score = 98.3 bits (244), Expect = 9e-24
Identities = 39/217 (17%), Positives = 66/217 (30%), Gaps = 63/217 (29%)
Query: 8 QVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL------------- 54
V P I E +SV L C A+ ++W + +
Sbjct: 546 HVTRGPEITLQPDM--QPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVC 603
Query: 55 -------------------GRLHLAIPYTSPE-------------------------AQV 70
L + + S +
Sbjct: 604 KNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLE 663
Query: 71 DTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT--GSTL 128
P I N + G+S+++ C A G+P P I W ++N ++ + + L
Sbjct: 664 RVAPTITGN-LENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNL 722
Query: 129 QIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAP 165
I R+ KED G Y C A + +G A+ + +E A
Sbjct: 723 TIRRVRKEDEGLYTCQACSVLGC-AKVEAFFIIEGAQ 758
Score = 95.6 bits (237), Expect = 7e-23
Identities = 33/178 (18%), Positives = 61/178 (34%), Gaps = 29/178 (16%)
Query: 69 QVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTG--- 125
V P I P + E +SV L C A+ ++W + LP
Sbjct: 546 HVTRGPEITL-QPDMQPT-EQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVC 603
Query: 126 ---------------------STLQIPRITKEDRGAYYCVAQNGIGRG---ARRKIEVKV 161
+++ + +D+G Y C+AQ+ + R++ V
Sbjct: 604 KNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLE 663
Query: 162 EFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTS 219
AP +T ++ +++ C P P + W KD E +V D + + +
Sbjct: 664 RVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRN 721
Score = 93.7 bits (232), Expect = 4e-22
Identities = 29/254 (11%), Positives = 63/254 (24%), Gaps = 47/254 (18%)
Query: 11 TPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRLGRLH------------ 58
P + L++ K ++Q+ C G W N +
Sbjct: 30 DLPRLSIQKDILTI-KANTTLQITC--RGQRDLDWLWPNNQSGSEQRVEVTECSDGLFCK 86
Query: 59 -LAIPYTSPE-------------------------AQVDTPPVILNNSPQLSVAKEGQSV 92
L IP V + + ++V
Sbjct: 87 TLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTV 146
Query: 93 QLECHAEGHPIP-TISWRRENNAILPNGQTIFT--GSTLQIPRITKEDRGAYYCVAQNGI 149
+ C + ++ R +P+G I IP G +C A+
Sbjct: 147 VIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKIND 206
Query: 150 G---RGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVV 206
+ V +V S I ++ + L+C + + + +
Sbjct: 207 ESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSK 266
Query: 207 NDEYHSISNFGTSE 220
+ ++ ++
Sbjct: 267 HQHKKLVNRDLKTQ 280
Score = 33.2 bits (75), Expect = 0.065
Identities = 11/102 (10%), Positives = 27/102 (26%), Gaps = 16/102 (15%)
Query: 139 GAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYW 198
+ CV + + + P +++Q + + + + C W
Sbjct: 10 ALWLCVETRAASV-GLPSVSLDL---PRLSIQKDILTIKANTTLQITC--RGQRDLDWLW 63
Query: 199 AKDGEIVVNDEYHSISNFGTSEGT----------TGSLQCKV 230
+ + + G T TG+ +C
Sbjct: 64 PNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFY 105
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 105 bits (263), Expect = 2e-28
Identities = 32/186 (17%), Positives = 55/186 (29%), Gaps = 51/186 (27%)
Query: 24 VAKEGQSVQLECHAEGHPIPTISWRRN-----------------------------FKRL 54
+ K+G +V+L C A W+ +
Sbjct: 6 LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQ 65
Query: 55 GRLHLAIPYTSPE-------------AQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGH 101
G L I E +V L + + +GQS+ L +
Sbjct: 66 GNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHL-LQGQSLTLTLESPPG 124
Query: 102 PIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161
P++ R P G+ I G TL + ++ +D G + C + KI++ V
Sbjct: 125 SSPSVQCRS------PRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKK-VEFKIDIVV 177
Query: 162 -EFAPI 166
F
Sbjct: 178 LAFQKA 183
Score = 78.1 bits (192), Expect = 4e-18
Identities = 27/168 (16%), Positives = 47/168 (27%), Gaps = 33/168 (19%)
Query: 85 VAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF--------------------- 123
+ K+G +V+L C A W+ N + Q F
Sbjct: 6 LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQ 65
Query: 124 TGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMD 183
L I + ED Y C ++ + + GQ+L
Sbjct: 66 GNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHL-----LQGQSLT---- 116
Query: 184 LDCHIEAYPHPILYWAK-DGEIVVNDEYHSISNFGTSEGTTGSLQCKV 230
L P + G+ + + S+S + +G+ C V
Sbjct: 117 LTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQD--SGTWTCTV 162
Score = 45.7 bits (108), Expect = 2e-06
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 6 ESQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRN 50
E Q+ + N+ T L +GQS+ L + P++ R
Sbjct: 93 EVQLLVFGLTANSDTHL---LQGQSLTLTLESPPGSSPSVQCRSP 134
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 105 bits (264), Expect = 2e-28
Identities = 49/202 (24%), Positives = 72/202 (35%), Gaps = 46/202 (22%)
Query: 8 QVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL------------- 54
Q D PP I+ + + L V+ +G+ L C AEG P PTI W + +R+
Sbjct: 5 QEDFPPRIVEHPSDLIVS-KGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRML 63
Query: 55 ---GRLHLAIPYTSPEAQVDT--------------------------PPVILNNSPQLSV 85
G L +++ D N P +
Sbjct: 64 LPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQN-PSDVM 122
Query: 86 AKEGQSVQLECHA-EGHPIPTISWRRENNAILPN-GQTIFTGSTLQIPRITKEDRGAYYC 143
G+ +EC GHP PTISW+++ + + + G L I K D G Y C
Sbjct: 123 VAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYVC 182
Query: 144 VAQNGIGRGARRKIEVKVEFAP 165
V N +G E+ V P
Sbjct: 183 VGTNMVGERESEVAELTVLERP 204
Score = 99.5 bits (248), Expect = 5e-26
Identities = 38/163 (23%), Positives = 63/163 (38%), Gaps = 14/163 (8%)
Query: 69 QVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQ------TI 122
Q D PP I+ P + +G+ L C AEG P PTI W + + + +
Sbjct: 5 QEDFPPRIVE-HPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRML 63
Query: 123 FTGSTLQIPRI-----TKEDRGAYYCVAQNGIGRGARRKIEVKV-EFAPIVTVQSTRIGQ 176
+L RI ++ D G Y CVA+N +G ++V + +
Sbjct: 64 LPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMV 123
Query: 177 ALHHDMDLDCH-IEAYPHPILYWAKDGEIVVNDEYHSISNFGT 218
A+ ++C +P P + W KDG + + + G
Sbjct: 124 AVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGK 166
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 110 bits (277), Expect = 2e-28
Identities = 30/247 (12%), Positives = 67/247 (27%), Gaps = 43/247 (17%)
Query: 8 QVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL-----------GR 56
+ + + + S+ L+ + + W L G
Sbjct: 45 RPQSSGTVYEAAAV--EVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGV 102
Query: 57 LHLAIPYTSPE---------------------AQVDTPPVILNNSPQLSVAKEGQSVQLE 95
+ + I + + + P + L
Sbjct: 103 VSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMEN--QDALV 160
Query: 96 CHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARR 155
C +E P P + W ++ + + + + C A+N +GR R
Sbjct: 161 CISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTR 220
Query: 156 KIEVKVEFAPIVTVQST--RIGQALHHDMDLDCHIEAYPHPI-LYWAKDGEIVVNDEYHS 212
+ + P T+ ++G+ L + C H L W + + + Y
Sbjct: 221 LFTIDLNQTPQTTLPQLFLKVGEPLW----IRCKAVHVNHGFGLTWELENKALEEGNYFE 276
Query: 213 ISNFGTS 219
+S + T+
Sbjct: 277 MSTYSTN 283
Score = 110 bits (275), Expect = 4e-28
Identities = 32/257 (12%), Positives = 64/257 (24%), Gaps = 50/257 (19%)
Query: 8 QVDTPPVILNNSTQLSVAKEGQSVQLECHA-EGHPIPTISWRRNFKRLGRLH-------- 58
++ P L K G+ + + C A + ++W K L +
Sbjct: 225 DLNQTPQTTLPQLFL---KVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYS 281
Query: 59 ----------LAIP---------YT---------SPEAQVDTPPVI-LNNSPQLSVAKEG 89
+ YT S + I NS + +
Sbjct: 282 TNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSALVTIVEKGFINATNSSEDYEIDQY 341
Query: 90 QSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGI 149
+ + +P +W + + + G ++ K G Y A+N
Sbjct: 342 EEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDD 401
Query: 150 GRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDE 209
+ + + P V +++ C + YP P W K + N
Sbjct: 402 A-QFTKMFTLNIRRKPQVLAEAS--------ASQASCFSDGYPLPSWTWKKCSDKSPNCT 452
Query: 210 YHSISNFGTSEGTTGSL 226
+
Sbjct: 453 EEITEGVWNRKANRKVF 469
Score = 108 bits (270), Expect = 2e-27
Identities = 30/248 (12%), Positives = 64/248 (25%), Gaps = 44/248 (17%)
Query: 8 QVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRLGRLH--------- 58
+ + + L C +E P P + W +
Sbjct: 136 SIRNTLLYTLRRPYFRKMEN--QDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKK 193
Query: 59 --------LAIPYT-----------SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHA- 98
+ +D PQL + K G+ + + C A
Sbjct: 194 EEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFL-KVGEPLWIRCKAV 252
Query: 99 EGHPIPTISWRRENNAILPN----------GQTIFTGSTLQIPRITKEDRGAYYCVAQNG 148
+ ++W EN A+ +T+ + + + D G Y C +
Sbjct: 253 HVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH 312
Query: 149 IGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVND 208
+ A + + + T S + + +AYP W + +
Sbjct: 313 PSQSAL--VTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCE 370
Query: 209 EYHSISNF 216
+ + +
Sbjct: 371 QKGLDNGY 378
Score = 93.6 bits (232), Expect = 3e-22
Identities = 20/168 (11%), Positives = 53/168 (31%), Gaps = 12/168 (7%)
Query: 69 QVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTG--- 125
+ + + + S+ L+ + + W +++++
Sbjct: 45 RPQSSGTVYEAAAV--EVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGV 102
Query: 126 STLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLD 185
++ I ++T+ G Y Q+ V + + T++ + + + L
Sbjct: 103 VSMVILKMTETQAGEYLLFIQSEAT-NYTILFTVSIRNTLLYTLRRPYF-RKMENQDALV 160
Query: 186 CHIEAYPHPILYWAKDGEIV--VNDEYHSISNFGT---SEGTTGSLQC 228
C E+ P PI+ W +E ++ E ++C
Sbjct: 161 CISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRC 208
Score = 82.4 bits (203), Expect = 2e-18
Identities = 26/218 (11%), Positives = 57/218 (26%), Gaps = 55/218 (25%)
Query: 8 QVDTPPVI-LNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL--------GRLH 58
+ I NS++ + + + +P +W + K
Sbjct: 320 TIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYS 379
Query: 59 LAIPYTSPE--------AQ-------------VDTPPVILNNSPQLSVAKEGQSVQLECH 97
++ A+ + P +L E + Q C
Sbjct: 380 ISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQVL---------AEASASQASCF 430
Query: 98 AEGHPIPTISWRRENNAILPNGQTIFTG---------------STLQIPRITKEDRGAYY 142
++G+P+P+ +W++ ++ + I G S+ +
Sbjct: 431 SDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVK 490
Query: 143 CVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHH 180
C A N +G + I + HH
Sbjct: 491 CCAYNSLGT-SCETILLNSPGPFPFIQDGGTKHHHHHH 527
Score = 41.6 bits (97), Expect = 1e-04
Identities = 8/84 (9%), Positives = 26/84 (30%), Gaps = 5/84 (5%)
Query: 136 EDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPI 195
+Y V+++ G + + + ++ + + + L ++A +
Sbjct: 25 GKSSSYPMVSESPEDLGCALRPQ-----SSGTVYEAAAVEVDVSASITLQVLVDAPGNIS 79
Query: 196 LYWAKDGEIVVNDEYHSISNFGTS 219
W + + + N G
Sbjct: 80 CLWVFKHSSLNCQPHFDLQNRGVV 103
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 104 bits (261), Expect = 1e-27
Identities = 42/232 (18%), Positives = 69/232 (29%), Gaps = 59/232 (25%)
Query: 4 SPESQVDT-PPVILN---NSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL----- 54
P++ VDT P +L +V+ C A G+P P+ISW +N +
Sbjct: 2 DPDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHR 61
Query: 55 --------GRLHLAIPYTSPE-------------------------AQVDTPPVILNNSP 81
+ L + P + P++ P
Sbjct: 62 IGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLP 121
Query: 82 QLSVAKEGQSVQLECHAEGHPIPTISWRRENNA----ILPNGQTIFT------------G 125
A G V+ C P I W + + P+G T
Sbjct: 122 ANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEAD 181
Query: 126 STLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQA 177
L++ +++ D G Y C A N IG A + + V + +A
Sbjct: 182 VRLRLANVSERDGGEYLCRATNFIGV-AEKAFWLSVHGPRAAEEELVEADEA 232
Score = 96.2 bits (239), Expect = 2e-24
Identities = 37/181 (20%), Positives = 64/181 (35%), Gaps = 23/181 (12%)
Query: 65 SPEAQVDT-PPVILN---NSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQ 120
P+ VDT P +L +V+ C A G+P P+ISW + +
Sbjct: 2 DPDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHR 61
Query: 121 T-----IFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE---------FAPI 166
+L + + DRG Y CV +N G R+ + V A +
Sbjct: 62 IGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGS-IRQTYTLDVLERSPHRPILQAGL 120
Query: 167 VTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSL 226
Q+ +G D++ C + + P + W K E+ + + + T + S
Sbjct: 121 PANQTAVLGS----DVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISE 176
Query: 227 Q 227
Sbjct: 177 S 177
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 102 bits (256), Expect = 2e-27
Identities = 31/156 (19%), Positives = 47/156 (30%), Gaps = 11/156 (7%)
Query: 73 PPVILNNSPQLSVAKEGQSVQLECHAEGHP-IPTISWRRENNAILPNGQTIFT------- 124
+ + P G+S C G ISW N L Q +
Sbjct: 2 VLQV-DIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60
Query: 125 GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDL 184
STL I +D G Y CV G + + VK+ + T D +
Sbjct: 61 SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVI 120
Query: 185 DCHIEAYPHPILYWAKDGEIVV--NDEYHSISNFGT 218
C + + P + W G V+ D + +
Sbjct: 121 VCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY 156
Score = 97.6 bits (243), Expect = 2e-25
Identities = 31/192 (16%), Positives = 55/192 (28%), Gaps = 44/192 (22%)
Query: 12 PPVILNNSTQLSVAKEGQSVQLECHAEGHP-IPTISWRRN---------------FKRLG 55
+ +Q ++ G+S C G ISW +
Sbjct: 2 VLQVDIVPSQGEIS-VGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60
Query: 56 RLHLAIPYTSPE--------AQ--------------VDTPPVILNNSPQLSVAKEGQSVQ 93
L I + + + + N +P KEG+
Sbjct: 61 SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKN-APTPQEFKEGEDAV 119
Query: 94 LECHAEGHPIPTISWRRENNAILPNG---QTIFTGSTLQIPRITKEDRGAYYCVAQNGIG 150
+ C PTI W+ + ++ + + + LQI I K D G Y C +
Sbjct: 120 IVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILAR 179
Query: 151 RGARRKIEVKVE 162
G +++V
Sbjct: 180 -GEINFKDIQVI 190
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 102 bits (256), Expect = 3e-27
Identities = 27/157 (17%), Positives = 51/157 (32%), Gaps = 13/157 (8%)
Query: 73 PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT------GS 126
P + + + L C GHP P + W R+ I+ +G
Sbjct: 4 APHFKE-ELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH 62
Query: 127 TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE-----FAPIVTVQSTRIGQALHHD 181
L I +T +D Y A N G ++VE P +
Sbjct: 63 QLIIASVTDDDATVYQVRATNQGGS-VSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEV 121
Query: 182 MDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGT 218
+ + P P++ W K +++ N+ ++ + +
Sbjct: 122 VSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRS 158
Score = 100 bits (251), Expect = 1e-26
Identities = 38/195 (19%), Positives = 62/195 (31%), Gaps = 46/195 (23%)
Query: 12 PPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL--------------GRL 57
P L+V + + L C GHP P + W R K + G
Sbjct: 4 APHFKEELRNLNV-RYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH 62
Query: 58 HLAIP---------------------YTSPEAQVDTPPVILN----NSPQLSVAKEGQSV 92
L I + +V+ P I A G+ V
Sbjct: 63 QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVV 122
Query: 93 QLECHAEGHPIPTISWRRENNAILPNGQTIFT-----GSTLQIPRITKEDRGAYYCVAQN 147
++ G P P I+W++ + I NG S + + ++D G Y A+N
Sbjct: 123 SIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKN 182
Query: 148 GIGRGARRKIEVKVE 162
G ++ +E+ V
Sbjct: 183 RFGI-DQKTVELDVA 196
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 107 bits (268), Expect = 4e-27
Identities = 39/268 (14%), Positives = 72/268 (26%), Gaps = 54/268 (20%)
Query: 9 VDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL----------GRLH 58
V P + L KE + C + S + + +
Sbjct: 111 VRDPAKLFLVDRSLYG-KEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAG 169
Query: 59 LAIP---------------------YTSPEAQV------DTPPVILNNSPQLSVAKEGQS 91
+ I S + + PV+ + + +EG+
Sbjct: 170 IMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLL-REGEE 228
Query: 92 VQLECHAEGHPIPT-ISWRRENNAILPNGQ---------TIFTGSTLQIPRITKEDRGAY 141
+ C + +W+REN+ + +TL I D G +
Sbjct: 229 FTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVF 288
Query: 142 YCVAQNGIGRGARRKIEVKVEFAPIVTV---QSTRIGQALHHDMDLDCHIEAYPHPILY- 197
C A N G A ++V + + +T + ++DL EA+P P
Sbjct: 289 MCYANNTFGS-ANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQ 347
Query: 198 WAKDGEIVVNDEYHSISNFGTSEGTTGS 225
W + + S S
Sbjct: 348 WIYMNRTFTDKWEDYPKSENESNIRYVS 375
Score = 105 bits (263), Expect = 2e-26
Identities = 36/258 (13%), Positives = 60/258 (23%), Gaps = 59/258 (22%)
Query: 9 VDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPT-ISWRRN----------------- 50
PV+ + + +EG+ + C + +W+R
Sbjct: 208 FKAVPVVSVSKASYLL-REGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGD 266
Query: 51 FKRLGRLHLAIPYTSPE---------------------AQVDTPPVILNNSPQLSV--AK 87
F + L I +V I +
Sbjct: 267 FNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVN 326
Query: 88 EGQSVQLECHAEGHPIPT-ISWRRENNAILPNG---------QTIFTGSTLQIPRITKED 137
+G++V L E P P W N I S L + R+ +
Sbjct: 327 DGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTE 386
Query: 138 RGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILY 197
G Y + N A V V P + + L C +P P +
Sbjct: 387 GGTYTFLVSNSDVN-AAIAFNVYVNTKPEILTYDR------LVNGMLQCVAAGFPEPTID 439
Query: 198 WAKDGEIVVNDEYHSISN 215
W +
Sbjct: 440 WYFCPGTEQRCSASVLPV 457
Score = 96.3 bits (239), Expect = 3e-23
Identities = 32/248 (12%), Positives = 61/248 (24%), Gaps = 36/248 (14%)
Query: 8 QVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRLGRL----HLAIPY 63
+PP I + L V + G ++L C G + W
Sbjct: 32 GEPSPPSIHPGKSDLIV-RVGDEIRLLCTDPG----FVKWTFEILDETNENKQNEWITEK 86
Query: 64 TSPE------------------AQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPT 105
V P + + KE + C +
Sbjct: 87 AEATNTGKYTCTNKHGLSNSIYVFVRDPAKLFL-VDRSLYGKEDNDTLVRCPLTDPEVTN 145
Query: 106 ISWRRENNAILPNGQTIFTGS--TLQIPRITK-EDRGAYYCVAQNGIGRGARRKIEVKV- 161
S + LP + I + + R +C K +KV
Sbjct: 146 YSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVR 205
Query: 162 ---EFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPI-LYWAKDGEIVVNDEYHSISNFG 217
+ P+V+V + + C I+ + W ++ E ++ + G
Sbjct: 206 PAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHG 265
Query: 218 TSEGTTGS 225
+
Sbjct: 266 DFNYERQA 273
Score = 85.5 bits (211), Expect = 2e-19
Identities = 29/213 (13%), Positives = 50/213 (23%), Gaps = 51/213 (23%)
Query: 8 QVDTPPVILNNSTQLSV--AKEGQSVQLECHAEGHPIPT-ISWRRNFKRLGRLHLAIPYT 64
+V I + +G++V L E P P W + P +
Sbjct: 306 EVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKS 365
Query: 65 SPEAQVD-------------------------------TPPVILNNSPQLSVAKEGQSVQ 93
E+ + V +N P++ +
Sbjct: 366 ENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEILTYDRLVNGM 425
Query: 94 LECHAEGHPIPTISWRRENNAILPNGQTIFTG----------------STLQIPRITKED 137
L+C A G P PTI W ++ I +
Sbjct: 426 LQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKH 485
Query: 138 RGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQ 170
G C A N +G+ + +
Sbjct: 486 NGTVECKAYNDVGK-TSAYFNFAFKGNNKEQIH 517
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 101 bits (254), Expect = 6e-27
Identities = 34/191 (17%), Positives = 61/191 (31%), Gaps = 42/191 (21%)
Query: 12 PPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL-----------GRLH-L 59
P I ++ K G++ QL C G P+P I W R K L GR H L
Sbjct: 7 APGIRKEMKDVTT-KLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTL 65
Query: 60 AIP---------------------YTSPEAQVDTPPVIL--NNSPQLSVAKEGQSVQLEC 96
+ TS + + P + G +++L
Sbjct: 66 TVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHV 125
Query: 97 HAEGHPIPTISWRRENNAILPNGQTIFT----GSTLQIPRITKE-DRGAYYCVAQNGIGR 151
G P+P ++W + + + L + + ++ G Y N G
Sbjct: 126 MYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGT 185
Query: 152 GARRKIEVKVE 162
++V+++
Sbjct: 186 -VDAILDVEIQ 195
Score = 100 bits (250), Expect = 2e-26
Identities = 33/152 (21%), Positives = 58/152 (38%), Gaps = 9/152 (5%)
Query: 73 PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT----GSTL 128
P I + K G++ QL C G P+P I W R ++ + + + TL
Sbjct: 7 APGIRK-EMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTL 65
Query: 129 QIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQST---RIGQALHHDMDLD 185
+ +ED G Y C+A N +G ++ ++ P + A+ + L
Sbjct: 66 TVMTEEQEDEGVYTCIATNEVGE-VETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLH 124
Query: 186 CHIEAYPHPILYWAKDGEIVVNDEYHSISNFG 217
P P + W +++ N E +I N
Sbjct: 125 VMYIGRPVPAMTWFHGQKLLQNSENITIENTE 156
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 103 bits (258), Expect = 7e-27
Identities = 38/254 (14%), Positives = 65/254 (25%), Gaps = 39/254 (15%)
Query: 1 PYTSPESQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRLGRLH-- 58
P SP +PP I ++L V + G ++ L C + W +
Sbjct: 3 PSASPGE--PSPPSIHPAQSELIV-EAGDTLSLTCIDPD----FVRWTFKTYFNEMVENK 55
Query: 59 ---LAIPYTSPE------------------AQVDTPPVILNNSPQLSVAKEGQSVQLECH 97
V P + L KE + C
Sbjct: 56 KNEWIQEKAEATRTGTYTCSNSNGLTSSIYVFVRDPAKLFLVGLPLFG-KEDSDALVRCP 114
Query: 98 AEGHPIPTISWRRENNAILPNGQTIFTGS--TLQIPRITK-EDRGAYYCVAQNGIGRGAR 154
+ S + LP T + I + + R C AQ
Sbjct: 115 LTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHS 174
Query: 155 RKIEVKV----EFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPI-LYWAKDGEIVVNDE 209
K +KV + P+V+V T + C I+ + W K +
Sbjct: 175 DKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIA 234
Query: 210 YHSISNFGTSEGTT 223
+++ +
Sbjct: 235 QVKHNSWHRGDFNY 248
Score = 84.0 bits (207), Expect = 1e-19
Identities = 30/202 (14%), Positives = 48/202 (23%), Gaps = 52/202 (25%)
Query: 9 VDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRN------------------ 50
V P + L KE + C + S
Sbjct: 88 VRDPAKLFLVGLPLFG-KEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAG 146
Query: 51 --FKRLGRLHLAIPYT-----------SPEAQVD------TPPVILNNSPQLSVAKEGQS 91
K + R + + S + + PV+ + K+G +
Sbjct: 147 ITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSV-PETSHLLKKGDT 205
Query: 92 VQLECHAEGHPIP-TISWRRENNAILPNGQTIFTG-----------STLQIPRITKEDRG 139
+ C + W + N Q TL I +D G
Sbjct: 206 FTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSG 265
Query: 140 AYYCVAQNGIGRGARRKIEVKV 161
+ C A N G A +KV
Sbjct: 266 VFMCYANNTFGS-ANVTTTLKV 286
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 101 bits (254), Expect = 2e-26
Identities = 39/231 (16%), Positives = 64/231 (27%), Gaps = 34/231 (14%)
Query: 13 PVILNNSTQLSVAKEGQSVQLECHAEGHPIP-TISWRRNFKRLGRL--HLAIPYTSPE-- 67
VI +SV + ++V L C P + W N I S
Sbjct: 2 AVITLQPPWVSVF-QEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTPSYRITSASVNDS 60
Query: 68 -----------------AQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGH-PIPTISWR 109
++ ++L V EG+ + L CHA + + +
Sbjct: 61 GEYRCQRGLSGRSDPIQLEIHRGWLLL--QVSSRVFTEGEPLALRCHAWKDKLVYNVLYY 118
Query: 110 RENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIG-RGARRKIEVKVEFAPIVT 168
R A S L I + G Y+C A + VK F V
Sbjct: 119 RNGKAFKFFHW----NSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVL 174
Query: 169 VQSTRIGQALHHDMDLDCHIEAYPH---PILYWAKDGEIVVNDEYHSISNF 216
S + + L C + LY++ ++ S +
Sbjct: 175 NASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSEY 225
Score = 91.5 bits (227), Expect = 2e-22
Identities = 38/183 (20%), Positives = 60/183 (32%), Gaps = 32/183 (17%)
Query: 8 QVDTPPVILNNSTQLSVAKEGQSVQLECHAEGH-PIPTISWRRNFKRLGRLH----LAIP 62
++ ++L V EG+ + L CHA + + + RN K H L I
Sbjct: 79 EIHRGWLLL--QVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWNSNLTIL 136
Query: 63 YTSPEA-----------------------QVDTPPVILNNSPQLSVAKEGQSVQLECHAE 99
T+ + P +LN S + EG V L C +
Sbjct: 137 KTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLL-EGNLVTLSCETK 195
Query: 100 GHPI-PTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIE 158
P + + T S QI +ED G Y+C A G +R E
Sbjct: 196 LLLQRPGLQLYFSFYMGSKTLRGRNTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPE 255
Query: 159 VKV 161
+++
Sbjct: 256 LEL 258
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 97.2 bits (242), Expect = 2e-26
Identities = 24/99 (24%), Positives = 37/99 (37%), Gaps = 3/99 (3%)
Query: 65 SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAE-GHPIPTISWRRENNAILPNGQTIF 123
+P A P ++ + + G V C A+ P T+ W R +N LP+ F
Sbjct: 1 APLAAPSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDF 60
Query: 124 TGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE 162
G L I + D G Y C N + + V+
Sbjct: 61 NG-ILTIRNVQPSDAGTYVCTGSNMFAM-DQGTATLHVQ 97
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 102 bits (256), Expect = 2e-26
Identities = 41/283 (14%), Positives = 85/283 (30%), Gaps = 73/283 (25%)
Query: 8 QVDTPPVILNNSTQLSV-AKEGQSVQLECHAEG-HPIPTISWRRNFKRL----------G 55
T P + LS +V L+C I W ++ + + G
Sbjct: 3 DPFTGPHFV---EYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDG 59
Query: 56 RLHLAIPYTSPE---------------------AQVDTPPVILNNSPQLSVAKEGQSVQL 94
L I S + + ++ +A +++
Sbjct: 60 ICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELM-MEVCKKIALSATDLKI 118
Query: 95 ECHAEG----------HPIPTISWRRENNAILPNG--QTIFTG--STLQIPRITKEDRGA 140
+ AEG ++W +AI + +T TG LQI T D+G
Sbjct: 119 QSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGK 178
Query: 141 YYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMD----------------- 183
Y +G ++ +++ + + R+ QA + +
Sbjct: 179 YVMELFDGKTG-HQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEG 237
Query: 184 ----LDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGT 222
L C++ P P + W K+ + + +D++ ++
Sbjct: 238 KALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAY 280
Score = 97.3 bits (242), Expect = 2e-24
Identities = 25/172 (14%), Positives = 54/172 (31%), Gaps = 20/172 (11%)
Query: 69 QVDTPPVILNNSPQLSVAKEGQSVQLECHAEG-HPIPTISWRRENNAILPNGQTIFT--G 125
T P + +V L+C I W ++ I + + F
Sbjct: 3 DPFTGPHFV--EYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGI 60
Query: 126 STLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLD 185
TL I +K+D G Y + ++ G+ + ++++ E + ++ + D+ +
Sbjct: 61 CTLLITEFSKKDAGIYEVILKDDRGK-DKSRLKLVDEAFKELMMEVCKKIALSATDLKIQ 119
Query: 186 CHIEA----------YPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQ 227
E + W+ +G + + G LQ
Sbjct: 120 STAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKT----GVTGEQIWLQ 167
Score = 83.8 bits (207), Expect = 2e-19
Identities = 32/219 (14%), Positives = 60/219 (27%), Gaps = 60/219 (27%)
Query: 2 YTSPESQVDTPPVILNNSTQLSVAKEGQSVQLECHAE-GHPIPTISWRRNFKRL------ 54
E ++ I ++T L + + +QL ++W N +
Sbjct: 96 EAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRV 155
Query: 55 ------GRLHLAIPYTSPE----------------------------------------- 67
++ L I +P
Sbjct: 156 KTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAA 215
Query: 68 AQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT--- 124
+L P + +EG+++ L C+ G P P +SW + A+ +
Sbjct: 216 IAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEA 275
Query: 125 --GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161
+ I ++ D G Y V +N G V V
Sbjct: 276 GRTAYFTINGVSTADSGKYGLVVKNKYGS-ETSDFTVSV 313
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 100 bits (250), Expect = 4e-26
Identities = 38/204 (18%), Positives = 58/204 (28%), Gaps = 56/204 (27%)
Query: 4 SPESQVDTPPVILN---NSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFK------RL 54
S S P N +L +V+ C A G+P+PT+ W +N K R+
Sbjct: 7 SENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRI 66
Query: 55 GRLH-------LAIPYTSPE-------------------------AQVDTPPVILNNSPQ 82
G L + P + P++ P
Sbjct: 67 GGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPA 126
Query: 83 LSVAKEGQSVQLECHAEGHPIPTISWRRENNA----ILPNGQTIFT-----------GST 127
+ G V+ C P I W + P+G
Sbjct: 127 NASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEV 186
Query: 128 LQIPRITKEDRGAYYCVAQNGIGR 151
L + +T+ D G Y C N IG+
Sbjct: 187 LALFNVTEADAGEYICKVSNYIGQ 210
Score = 94.2 bits (234), Expect = 1e-23
Identities = 32/156 (20%), Positives = 54/156 (34%), Gaps = 22/156 (14%)
Query: 65 SPEAQVDTPPVILN---NSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNG-- 119
S + P N +L +V+ C A G+P+PT+ W +
Sbjct: 7 SENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRI 66
Query: 120 ---QTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV----EFAPIVTV--- 169
+ +L + + D+G Y CV +N G + V PI+
Sbjct: 67 GGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGS-INHTYHLDVVERSRHRPILQAGLP 125
Query: 170 --QSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGE 203
ST +G D++ C + + P + W K E
Sbjct: 126 ANASTVVGG----DVEFVCKVYSDAQPHIQWIKHVE 157
Score = 36.0 bits (83), Expect = 0.005
Identities = 7/79 (8%), Positives = 22/79 (27%), Gaps = 2/79 (2%)
Query: 144 VAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGE 203
+A++ + + + ++ + + C P P + W K+G+
Sbjct: 1 MAEDFVS--ENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGK 58
Query: 204 IVVNDEYHSISNFGTSEGT 222
+ +
Sbjct: 59 EFKQEHRIGGYKVRNQHWS 77
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 102 bits (257), Expect = 6e-26
Identities = 35/161 (21%), Positives = 64/161 (39%), Gaps = 14/161 (8%)
Query: 74 PVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTG-------- 125
P I+ + E V L C AEG PIP I+W+R +
Sbjct: 2 PHII--QLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQ 59
Query: 126 ---STLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDM 182
S+L I + D G Y C A + IG G ++ + + +E+AP T + +
Sbjct: 60 HGSSSLHIKDVKLSDSGRYDCEAASRIG-GHQKSMYLDIEYAPKFISNQTIYYSWEGNPI 118
Query: 183 DLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTT 223
++ C +++ P ++W +D ++ ++ + T
Sbjct: 119 NISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMI 159
Score = 96.8 bits (241), Expect = 9e-24
Identities = 41/199 (20%), Positives = 66/199 (33%), Gaps = 50/199 (25%)
Query: 13 PVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL----------GRLH---- 58
P I+ + E V L C AEG PIP I+W+R GR+
Sbjct: 2 PHII--QLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQ 59
Query: 59 -----LAIPYTSPE--------A-------------QVDTPPVILNNSPQLSVAKEGQSV 92
L I A ++ P ++ + + + EG +
Sbjct: 60 HGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFIS-NQTIYYSWEGNPI 118
Query: 93 QLECHAEGHPIPTISWRRENNAILPNGQTIF------TGSTLQIPRITKEDRGAYYCVAQ 146
+ C + +P +I WRR+ + T L+I + D G Y C A
Sbjct: 119 NISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTAT 178
Query: 147 NGIGRGARRKIEVKVEFAP 165
N IG ++ + + P
Sbjct: 179 NHIGT-RFQEYILALADVP 196
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 96.1 bits (239), Expect = 1e-24
Identities = 43/211 (20%), Positives = 70/211 (33%), Gaps = 51/211 (24%)
Query: 4 SPESQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL--------- 54
+P + P I+ + T L V + + L C EG P PTI W ++ + +
Sbjct: 1 APLAGQYQSPRIIEHPTDLVVK-KNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHR 59
Query: 55 -----GRLHLAIP-----------YT-----------SPEAQVD---TPPVILNNSPQLS 84
G L Y S A + P+ +
Sbjct: 60 VQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVE-PKDT 118
Query: 85 VAKEGQSVQLECH-AEGHPIPTISWRRENNAILPNG---------QTIFTGSTLQIPRIT 134
+G++ LEC +G P PT+ W ++ + I G L I +
Sbjct: 119 RVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVE 178
Query: 135 KEDRGAYYCVAQNGIGRGARRKIEVKVEFAP 165
D G Y C+AQN +G ++ V+
Sbjct: 179 PIDEGNYKCIAQNLVGTRESSYAKLIVQVKA 209
Score = 91.8 bits (228), Expect = 6e-23
Identities = 39/161 (24%), Positives = 64/161 (39%), Gaps = 11/161 (6%)
Query: 65 SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF- 123
+P A P I+ P V K+ + L C EG P PTI W ++ + N +
Sbjct: 1 APLAGQYQSPRIIE-HPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHR 59
Query: 124 ----TGS---TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV-EFAPIVTVQSTRIG 175
G+ + ++D G Y+CVA+N +G+ R +++ V+
Sbjct: 60 VQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTR 119
Query: 176 QALHHDMDLDCH-IEAYPHPILYWAKDGEIVVNDEYHSISN 215
A L+C + P P L W KDG + + + S
Sbjct: 120 VAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGA 160
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 96.3 bits (239), Expect = 3e-24
Identities = 33/182 (18%), Positives = 58/182 (31%), Gaps = 37/182 (20%)
Query: 8 QVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRLGRLHLAIPYTSPE 67
+ + P T+ V EG V ++C A T++ R L + T +
Sbjct: 94 TIYSFPAPNVILTKPEV-SEGTEVTVKCEAHPRAKVTLNGVPAQPLGPRAQLLLKATPED 152
Query: 68 A-------------------------QVDTPPVILN-NSPQLSVAKEGQSVQLECHAEGH 101
+V P + + P E C A G+
Sbjct: 153 NGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGN 212
Query: 102 PIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161
P+P + ++ LP G + +T++ G Y C A++ G R++ V V
Sbjct: 213 PLPELKCLKDGTFPLPIG---------ESVTVTRDLEGTYLCRARSTQGE-VTREVTVNV 262
Query: 162 EF 163
Sbjct: 263 LS 264
Score = 68.5 bits (167), Expect = 5e-14
Identities = 35/236 (14%), Positives = 64/236 (27%), Gaps = 53/236 (22%)
Query: 11 TPPVILNNSTQLSVAKEGQSVQLECHAEGH---PIPTISWRRNFKRL-------GRLHLA 60
TPP + V + + C +G + +RL A
Sbjct: 5 TPPQL----VSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSA 60
Query: 61 IPYTSPEAQ-------------------------VDTPPVILNNSPQLSVAKEGQSVQLE 95
S A+ + + P + V EG V ++
Sbjct: 61 KASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEV-SEGTEVTVK 119
Query: 96 CHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARR 155
C E HP ++ Q + + L + +++ ++ C A +
Sbjct: 120 C--EAHPRAKVTLNGVP------AQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIH 171
Query: 156 K---IEVKVEFAPIVTVQSTRIGQALH--HDMDLDCHIEAYPHPILYWAKDGEIVV 206
K E++V + P + + C P P L KDG +
Sbjct: 172 KNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPL 227
Score = 54.3 bits (130), Expect = 4e-09
Identities = 25/166 (15%), Positives = 47/166 (28%), Gaps = 16/166 (9%)
Query: 72 TPPVILNNSPQLSVAKEGQSVQLECHAEGH---PIPTISWRRENNAILPN---GQTIFTG 125
TPP + SP+ V + + C +G + + + P G F+
Sbjct: 5 TPPQL--VSPR--VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSA 60
Query: 126 STLQIPRITKEDRGAYYCVAQNGIGRG-ARRKIEVKVEFAPIVTVQSTRIGQALHHDMDL 184
E C G + + + AP V + + + ++ +
Sbjct: 61 KASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEV--SEGTEVTV 118
Query: 185 DCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQCKV 230
C EA+P + + + T E S C
Sbjct: 119 KC--EAHPRAKVTLNGVPAQPLGPRAQLLLK-ATPEDNGRSFSCSA 161
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 96.8 bits (240), Expect = 5e-24
Identities = 36/275 (13%), Positives = 77/275 (28%), Gaps = 54/275 (19%)
Query: 4 SPESQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPI---------PTISWRRNFKRL 54
+ P + T +A G+ +C + ++W + K
Sbjct: 20 PAKDSKWLNPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTR 79
Query: 55 GRLHLAIP-----------------YT-------------SPEAQVDTPPVILNNSPQLS 84
L+ + Y + + PP + + +L
Sbjct: 80 RPLNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELG 139
Query: 85 VAKEGQSVQLECH-AEGHPIPTISWRRENNAILPNG-QTIFTGSTLQIPRITKEDRGAYY 142
+ + L C I+W + N ++ +G + +G L I ED G Y
Sbjct: 140 TH-DKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRYD 198
Query: 143 CVAQNGIGRG-----ARRKIEVKV---EFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHP 194
C R R + V + + +I + ++ C +
Sbjct: 199 CYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLL 258
Query: 195 ----ILYWAKDGEIVVNDEYHSISNFGTSEGTTGS 225
++ W ++ ++ S +S G T +
Sbjct: 259 VDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEA 293
Score = 82.6 bits (203), Expect = 8e-19
Identities = 23/170 (13%), Positives = 49/170 (28%), Gaps = 12/170 (7%)
Query: 60 AIPYTSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPI---------PTISWRR 110
+ P + +A G+ +C + ++W +
Sbjct: 15 MRDTLPAKDSKWLNPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEK 74
Query: 111 ENNAILPNGQTIFTGSTLQIPRITKEDRGAYY-CVAQNGIGRGARRKIEVKVEFAPIVTV 169
P + + L I T D Y C G + + + P
Sbjct: 75 IGKTRRPLNRRV-KNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIP 133
Query: 170 QSTRIGQALHHDMDLDCHI-EAYPHPILYWAKDGEIVVNDEYHSISNFGT 218
++ +G + +DL C I A + + W K+ + ++ D +
Sbjct: 134 ETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQN 183
Score = 79.9 bits (196), Expect = 7e-18
Identities = 31/209 (14%), Positives = 56/209 (26%), Gaps = 57/209 (27%)
Query: 8 QVDTPPVILNNSTQLSVAKEGQSVQLECH-AEGHPIPTISWRRNFKRL---------GRL 57
+ PP + + +L + + L C I+W +N + L
Sbjct: 124 HIRKPPSCIPETYELGTH-DKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQ 182
Query: 58 HLAIPYTSPE------------------------------AQVDTPPVILNNSPQLSVAK 87
+L I E L P+++V
Sbjct: 183 NLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVT- 241
Query: 88 EGQSVQLECHAEGHPIP----TISWRRENNAILPNGQTIFT---------GSTLQIPRIT 134
G+ + C A + I W + I+ +++ +TL +T
Sbjct: 242 IGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVT 301
Query: 135 KEDRGAYY-CVAQNGIGRGARRKIEVKVE 162
+E G Y C N V +E
Sbjct: 302 EEYIGNTYTCRGHNYYFD-KTLTTTVVLE 329
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 91.8 bits (228), Expect = 2e-23
Identities = 26/174 (14%), Positives = 51/174 (29%), Gaps = 29/174 (16%)
Query: 11 TPPVILNNSTQLSVAKEGQSVQLECHAEGHPIP-TISWRRNFKRLGRL--HLAIPYTSPE 67
P +L + SV L C P +I W N + +
Sbjct: 2 PPKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNN 61
Query: 68 -------------------AQVDTPPVILNNSPQLSVAKEGQSVQLECHAE-GHPIPTIS 107
V ++L +EG+++ L CH+ P+ ++
Sbjct: 62 DSGEYTCQTGQTSLSDPVHLTVLFEWLVLQTPH--LEFQEGETIMLRCHSWKDKPLVKVT 119
Query: 108 WRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161
+ + + + T IP+ G Y+C G + + + + V
Sbjct: 120 FFQNGKSQKFSH----LDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169
Score = 71.4 bits (175), Expect = 8e-16
Identities = 25/136 (18%), Positives = 39/136 (28%), Gaps = 12/136 (8%)
Query: 72 TPPVILNNSPQLSVAKEGQSVQLECHAEGHPIP-TISWRRENNAILPNGQTIFTGSTLQI 130
P +L P + SV L C P +I W N I + Q
Sbjct: 2 PPKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQ------PSYR 55
Query: 131 PRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEA 190
+ D G Y C + + V F +V Q + L CH
Sbjct: 56 FKANNNDSGEYTCQTGQTSLSDP---VHLTVLFEWLVLQTPHLEFQE-GETIMLRCHSWK 111
Query: 191 YPHPILY-WAKDGEIV 205
+ + ++G+
Sbjct: 112 DKPLVKVTFFQNGKSQ 127
Score = 37.1 bits (86), Expect = 0.001
Identities = 9/44 (20%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 8 QVDTPPVILNNSTQLSVAKEGQSVQLECHAE-GHPIPTISWRRN 50
V ++L +EG+++ L CH+ P+ +++ +N
Sbjct: 82 TVLFEWLVLQTPH--LEFQEGETIMLRCHSWKDKPLVKVTFFQN 123
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 94.1 bits (234), Expect = 4e-23
Identities = 28/162 (17%), Positives = 53/162 (32%), Gaps = 13/162 (8%)
Query: 73 PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTI------FTGS 126
P + + + L C GHP P + W R+ I+ +G
Sbjct: 4 APHFKEE-LRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH 62
Query: 127 TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQA-----LHHD 181
L I +T +D Y A N G ++VE + + T G
Sbjct: 63 QLIIASVTDDDATVYQVRATNQGGS-VSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEV 121
Query: 182 MDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTT 223
+ + P P++ W K +++ N+ ++ + +
Sbjct: 122 VSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLV 163
Score = 92.9 bits (231), Expect = 9e-23
Identities = 41/194 (21%), Positives = 63/194 (32%), Gaps = 46/194 (23%)
Query: 12 PPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL--------------GRL 57
P L+V + + L C GHP P + W R K + G
Sbjct: 4 APHFKEELRNLNV-RYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH 62
Query: 58 HLAIP---------YT----------SPEAQ--VDTPPVI----LNNSPQLSVAKEGQSV 92
L I Y S A V+ P I A G+ V
Sbjct: 63 QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVV 122
Query: 93 QLECHAEGHPIPTISWRRENNAILPNGQTIFT-----GSTLQIPRITKEDRGAYYCVAQN 147
++ G P P I+W++ + I NG S + + ++D G Y A+N
Sbjct: 123 SIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKN 182
Query: 148 GIGRGARRKIEVKV 161
G ++ +E+ V
Sbjct: 183 RFGI-DQKTVELDV 195
Score = 42.4 bits (100), Expect = 4e-05
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 11 TPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL 54
P L + G+ V ++ G P P I+W++ +
Sbjct: 103 HLPKTLEGMGAVHA-LRGEVVSIKIPFSGKPDPVITWQKGQDLI 145
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 89.1 bits (221), Expect = 4e-23
Identities = 30/113 (26%), Positives = 45/113 (39%), Gaps = 12/113 (10%)
Query: 69 QVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQ------TI 122
Q D PP I+ P + +G+ L C AEG P PTI W + + + +
Sbjct: 5 QEDFPPRIVE-HPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRML 63
Query: 123 FTGSTLQIPRI-----TKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQ 170
+L RI ++ D G Y CVA+N +G ++V A
Sbjct: 64 LPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAAHHHHH 116
Score = 32.9 bits (75), Expect = 0.029
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
Query: 161 VEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSE 220
+F P + + + + L+C E P P + W K GE V D+ S+
Sbjct: 6 EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLP 65
Query: 221 GTTGSLQ 227
GSL
Sbjct: 66 S--GSLF 70
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 88.2 bits (219), Expect = 8e-23
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 69 QVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT--GS 126
P I N + G+S+++ C A G+P P I W ++N ++ + +
Sbjct: 6 LERVAPTITGN-LENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNR 64
Query: 127 TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVT 168
L I R+ KED G Y C A + +G A+ + +E A T
Sbjct: 65 NLTIRRVRKEDEGLYTCQACSVLGC-AKVEAFFIIEGAQEKT 105
Score = 49.6 bits (119), Expect = 2e-08
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 8 QVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRN 50
P I N + G+S+++ C A G+P P I W ++
Sbjct: 6 LERVAPTITGNLENQTT-SIGESIEVSCTASGNPPPQIMWFKD 47
Score = 43.5 bits (103), Expect = 4e-06
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
Query: 155 RKIEVKVEFAPIVTV----QSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEY 210
R++ V AP +T Q+T IG+ +++ C P P + W KD E +V D
Sbjct: 1 RQLTVLERVAPTITGNLENQTTSIGE----SIEVSCTASGNPPPQIMWFKDNETLVEDSG 56
Query: 211 HSISNFGTS 219
+ + +
Sbjct: 57 IVLKDGNRN 65
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 90.0 bits (223), Expect = 1e-22
Identities = 34/177 (19%), Positives = 55/177 (31%), Gaps = 27/177 (15%)
Query: 10 DTPPVILNNSTQLSVAKEGQSVQLECHAEGHP-IPTISWRRNFKRLGRLH--LAIP---- 62
P V LN +G++V L C+ + + W N + L I
Sbjct: 3 QKPKVSLNPPWN--RIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSSLNIVNAKF 60
Query: 63 -----YT--------SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAE-GHPIPTISW 108
Y S ++ L V EGQ + L CH + + +
Sbjct: 61 EDSGEYKCQHQQVNESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIY 120
Query: 109 RRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAP 165
++ A+ + + I T ED G YYC + + + V AP
Sbjct: 121 YKDGEALKYWYE----NHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAP 173
Score = 35.6 bits (82), Expect = 0.005
Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 8 QVDTPPVILNNSTQLSVAKEGQSVQLECHAE-GHPIPTISWRRN 50
+V + ++L S + V EGQ + L CH + + + ++
Sbjct: 82 EVFSDWLLLQASAE--VVMEGQPLFLRCHGWRNWDVYKVIYYKD 123
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 90.3 bits (224), Expect = 1e-22
Identities = 27/157 (17%), Positives = 46/157 (29%), Gaps = 16/157 (10%)
Query: 73 PPVILNNSPQLSVAKEGQSVQLECHAE-GHPIPTISWRRENNAILPNGQT---------- 121
+ +P G + L C + P + W R+ + T
Sbjct: 2 ESPFVG-NPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDE 60
Query: 122 ---IFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQAL 178
S L+I + D G Y C+ G + V +E P + A
Sbjct: 61 QDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAA 120
Query: 179 HHDMDLDCHIEAYPHPILY-WAKDGEIVVNDEYHSIS 214
+ +L C + P P+ W +D + H
Sbjct: 121 NTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQ 157
Score = 85.7 bits (212), Expect = 6e-21
Identities = 30/196 (15%), Positives = 51/196 (26%), Gaps = 50/196 (25%)
Query: 12 PPVILNNSTQLSVAKEGQSVQLECHAE-GHPIPTISWRRNFKRLGRL------------- 57
+ N ++ A G + L C + P + W R+ + L
Sbjct: 2 ESPFVGNPGNITGA-RGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDE 60
Query: 58 --------HLAIPYTSPE----------------------AQVDTPPVILNNSPQLSVAK 87
L I ++ P L P+
Sbjct: 61 QDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLE-EPEDRTVA 119
Query: 88 EGQSVQLECHAEGHPIPT-ISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQ 146
L C A+G P P + W + + L +L +P + ++ C A
Sbjct: 120 ANTPFNLSCQAQGPPEPVDLLWLQ-DAVPLATAPGHGPQRSLHVPGL--NKTSSFSCEAH 176
Query: 147 NGIGRGARRKIEVKVE 162
N G R + V
Sbjct: 177 NAKGVTTSRTATITVL 192
Score = 44.9 bits (106), Expect = 5e-06
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 8 QVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPT-ISWRRNFKRLGR 56
++ P L +VA L C A+G P P + W ++ L
Sbjct: 102 GLEGLPYFLEEPEDRTVA-ANTPFNLSCQAQGPPEPVDLLWLQDAVPLAT 150
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 94.2 bits (233), Expect = 2e-22
Identities = 31/182 (17%), Positives = 55/182 (30%), Gaps = 39/182 (21%)
Query: 8 QVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRLGRLHLAIPYTSPE 67
P ++ + EG V ++C A T++ R L + T +
Sbjct: 281 YSFPAPNVILTKPE---VSEGTEVTVKCEAHPRAKVTLNGVPAQPLGPRAQLLLKATPED 337
Query: 68 A-------------------------QVDTPPVILNNS-PQLSVAKEGQSVQLECHAEGH 101
+V P + P E C A G+
Sbjct: 338 NGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGN 397
Query: 102 PIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161
P+P + ++ LP G + +T++ G Y C A++ G R++ V V
Sbjct: 398 PLPELKCLKDGTFPLPIG---------ESVTVTRDLEGTYLCRARSTQGE-VTREVTVNV 447
Query: 162 EF 163
Sbjct: 448 LS 449
Score = 75.7 bits (185), Expect = 4e-16
Identities = 31/243 (12%), Positives = 60/243 (24%), Gaps = 47/243 (19%)
Query: 3 TSPESQVDTPPVILNNSTQLSVAKEGQSVQLECHAEG---HPIPTISWRRNFKRLGR--- 56
+ Q P V + + C +G + +RL
Sbjct: 178 APYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVT 237
Query: 57 ------LHLAIPYTSPE--------AQVDTPPVILNNSPQLSV--------------AKE 88
A + E V +++ E
Sbjct: 238 YGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSE 297
Query: 89 GQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNG 148
G V ++C A T++ Q + + L + +++ ++ C A
Sbjct: 298 GTEVTVKCEAHPRAKVTLNGVP--------AQPLGPRAQLLLKATPEDNGRSFSCSATLE 349
Query: 149 IGRGARRK---IEVKVEFAPIVTVQSTRIGQALH--HDMDLDCHIEAYPHPILYWAKDGE 203
+ K E++V + P + + C P P L KDG
Sbjct: 350 VAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGT 409
Query: 204 IVV 206
+
Sbjct: 410 FPL 412
Score = 68.7 bits (167), Expect = 9e-14
Identities = 26/222 (11%), Positives = 51/222 (22%), Gaps = 43/222 (19%)
Query: 24 VAKEGQSVQLECHAEGHPIPTISWRRNFKR-------LGRLHLAIPYTSPEAQ------- 69
+ G SV + C + + R + ++Q
Sbjct: 10 ILPRGGSVLVTCSTSCDQPMLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQPMCYSNC 69
Query: 70 ------------VDTPPVILNNSPQLSVAKEGQSVQLECHAEG-HPIP--TISWRRENNA 114
V P + +P S G+++ L C EG P T+ R
Sbjct: 70 PDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLR-GEK 128
Query: 115 ILPNGQTIF--TGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQST 172
L + T + + C + + E + T
Sbjct: 129 ELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLP 188
Query: 173 RIGQALHHDMD--------LDCHIEA---YPHPILYWAKDGE 203
L + C ++ ++ A +
Sbjct: 189 ATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQ 230
Score = 66.0 bits (160), Expect = 8e-13
Identities = 32/242 (13%), Positives = 60/242 (24%), Gaps = 50/242 (20%)
Query: 9 VDTPPVILNNSTQLSVAKEGQSVQLECHAEG-HPIP--TISWRRNFKRLGR--------- 56
V P + + S G+++ L C EG P T+ R K L R
Sbjct: 82 VYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAE 141
Query: 57 --LHLAI-------PYT--------------------SPEAQVDTPPVILNNSPQLSVAK 87
+ + ++ + Q P V +
Sbjct: 142 VTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLE 201
Query: 88 EGQSVQLECHAEG---HPIPTISWRRENNAILPNG-QTIFTGSTLQIPRITKEDRGAYY- 142
+ C +G + + + P + S +T ED G
Sbjct: 202 VDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRL 261
Query: 143 -CVAQNGIGRG-ARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAK 200
C G + + + AP V + + + ++ + C L
Sbjct: 262 TCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSE--GTEVTVKCEAHPRAKVTLNGVP 319
Query: 201 DG 202
Sbjct: 320 AQ 321
Score = 59.1 bits (142), Expect = 2e-10
Identities = 20/162 (12%), Positives = 51/162 (31%), Gaps = 16/162 (9%)
Query: 80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITK-EDR 138
SP + G SV + C + LP + + G+ ++ ++ ++
Sbjct: 5 SPSKVILPRGGSVLVTCSTSCDQPMLLGIETP----LPKKELLLPGNNRKVYELSNVQED 60
Query: 139 GAYYCVAQNGIGRGARRKIEVKVEFAP-IVTVQSTRIGQALHHDMDLDCHIEA---YPHP 194
C + + K + V + P V + Q + ++ L C +E +
Sbjct: 61 SQPMCYSNCP-DGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANL 119
Query: 195 ILYWAKDGEIVVNDEYHSISNFGTS------EGTTGSLQCKV 230
+ + + + + T+ + + C+
Sbjct: 120 TVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRT 161
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 86.6 bits (215), Expect = 2e-22
Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 6/91 (6%)
Query: 72 TPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIP 131
+ I P G ++ L+C A G PIP W + N L + T +P
Sbjct: 2 SKLQICV-EPTSQKLMPGSTLVLQCVAVGSPIPHYQWFK-NELPLTHE----TKKLYMVP 55
Query: 132 RITKEDRGAYYCVAQNGIGRGARRKIEVKVE 162
+ E +G Y+C N +K+E+ ++
Sbjct: 56 YVDLEHQGTYWCHVYNDRDSQDSKKVEIIID 86
Score = 49.3 bits (118), Expect = 2e-08
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 11 TPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRLG---RLHLAIPYTSPE 67
+ I T + G ++ L+C A G PIP W +N L + +PY E
Sbjct: 2 SKLQICVEPTSQKLM-PGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLE 60
Score = 25.4 bits (56), Expect = 7.7
Identities = 9/49 (18%), Positives = 15/49 (30%), Gaps = 4/49 (8%)
Query: 184 LDCHIEAYPHPILYWAKDGEIVVNDEYHS--ISNFGTSEGTTGSLQCKV 230
L C P P W K+ + ++ + G+ C V
Sbjct: 23 LQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEH--QGTYWCHV 69
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 91.0 bits (225), Expect = 6e-22
Identities = 36/205 (17%), Positives = 57/205 (27%), Gaps = 43/205 (20%)
Query: 9 VDTPPVILNNSTQLSV----AKEGQSVQLECH-AEGHPIPTISWRRNFKRL--------- 54
V P TQ + ++ + + C A G P +SW K
Sbjct: 127 VMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNP 186
Query: 55 -------GRLHL-----------------AIPYTSPEAQVD--TPPVILNNSPQLSVAKE 88
R L + ++ P + + +
Sbjct: 187 NGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQ 246
Query: 89 GQSVQLECHAEGHPIPT-ISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQN 147
V+L C A+ +P T W N + LP G + I G Y C A N
Sbjct: 247 RMDVKLTCKADANPPATEYHWTTLNGS-LPKGVEAQNRTLFFKGPINYSLAGTYICEATN 305
Query: 148 GIGRGARRKIEVKVEFAPIVTVQST 172
IG ++EV + A +
Sbjct: 306 PIGTR-SGQVEVNITEAAALEHHHH 329
Score = 80.2 bits (197), Expect = 6e-18
Identities = 29/188 (15%), Positives = 58/188 (30%), Gaps = 23/188 (12%)
Query: 34 ECHAEGHPIPTISWRRNFKRLGRLHLAIPYTSPEAQVDTPPVILNNSPQLSVAKEGQSVQ 93
C P +L+L + P ++ +L ++ + +
Sbjct: 108 ICEFATFPTGNRE--------SQLNLTVM-AKPTNWIEGTQAVLRAKK----GQDDKVLV 154
Query: 94 LECH-AEGHPIPTISWRRENN------AILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQ 146
C A G P +SW I T+ S ++ + + + C+
Sbjct: 155 ATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVN 214
Query: 147 NGIGRGARRKIEVKVEFAPIVTVQSTRIGQAL-HHDMDLDCHIEAYPHPILY-WAKDGEI 204
+ R + + + V++ P VT++ L D+ L C +A P Y W
Sbjct: 215 YHMDR-FKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGS 273
Query: 205 VVNDEYHS 212
+
Sbjct: 274 LPKGVEAQ 281
Score = 58.2 bits (140), Expect = 3e-10
Identities = 25/189 (13%), Positives = 47/189 (24%), Gaps = 32/189 (16%)
Query: 67 EAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHP----IPTISWRRENNAILPNGQTI 122
Q+ P + G V L C I ++W++ N N
Sbjct: 7 GQQMGRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIY 66
Query: 123 FTG----------------------STLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVK 160
T+++ R+ ED G Y C ++ +
Sbjct: 67 NPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLT 126
Query: 161 VEFAPIVTVQSTRIGQALHHDMD-----LDCHI-EAYPHPILYWAKDGEIVVNDEYHSIS 214
V P ++ T+ D C P ++ W + +
Sbjct: 127 VMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNP 186
Query: 215 NFGTSEGTT 223
N + +
Sbjct: 187 NGTVTVISR 195
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 85.2 bits (211), Expect = 8e-22
Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 2/96 (2%)
Query: 66 PEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTG 125
P P + + + G +QL C +I+W R+ ++ + +T TG
Sbjct: 1 PTLPEQAQPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRITG 59
Query: 126 STLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161
+++ D G Y CV + G V V
Sbjct: 60 EEVEVRDSIPADSGLYACVTSSPSGS-DTTYFSVNV 94
Score = 45.6 bits (108), Expect = 5e-07
Identities = 12/71 (16%), Positives = 23/71 (32%), Gaps = 9/71 (12%)
Query: 5 PESQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL---GRLH--- 58
P P + + + G +QL C +I+W R+ +L R
Sbjct: 1 PTLPEQAQPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRITG 59
Query: 59 --LAIPYTSPE 67
+ + + P
Sbjct: 60 EEVEVRDSIPA 70
Score = 27.5 bits (61), Expect = 1.6
Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Query: 165 PIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISN 215
V V+ + + L C + + W +DG +V I+
Sbjct: 10 WGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRITG 59
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 90.3 bits (223), Expect = 1e-21
Identities = 39/274 (14%), Positives = 63/274 (22%), Gaps = 72/274 (26%)
Query: 24 VAKEGQSVQLECH-----------AEGHPIPTISWRRN------------FKRLGRLH-- 58
E + +++C T+ W R+
Sbjct: 18 QVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKE 77
Query: 59 ---LAIPYTSPE------------------------AQVDTPPVILNNSPQLSVAKEGQS 91
L T Q D+ P + E
Sbjct: 78 KDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGI 137
Query: 92 VQLEC-----HAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQ 146
++ C + PTI+W I I G L + G Y CV
Sbjct: 138 QRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCVVT 197
Query: 147 ---NGIGRGARRKIEVKVEFAPIVTV--------QSTRIGQALHHDMDLDCHI----EAY 191
NG R + VKV +P V + ++ + C +
Sbjct: 198 YPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMD 257
Query: 192 PHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGS 225
++W DG+ + N S T
Sbjct: 258 SRNEVWWTIDGKKPDDITIDVTINESISHSRTED 291
Score = 64.1 bits (155), Expect = 3e-12
Identities = 23/219 (10%), Positives = 54/219 (24%), Gaps = 62/219 (28%)
Query: 5 PESQVDTPPVILNNSTQLSVAKEGQSV--QLECHAEGHPIPTISWRRNFKRLGRLH---- 58
+ P+ L + ++ + PTI+W ++ +
Sbjct: 115 QKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIP 174
Query: 59 ----LAIPYTSPE------------------------------AQVDTPPVILNNSPQLS 84
L+ + + P ++++
Sbjct: 175 EGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHV 234
Query: 85 V--AKEGQSVQLECHA----EGHPIPTISWRRENNAILPNGQTIF--------------T 124
V + G+ + + C + W + +
Sbjct: 235 VYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETR 294
Query: 125 GSTLQIPRITKEDRGA-YYCVAQNGIGRGARRKIEVKVE 162
L I ++T ED Y C A++ G + +VK +
Sbjct: 295 TQILSIKKVTSEDLKRSYVCHARSAKGE-VAKAAKVKQK 332
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 89.4 bits (221), Expect = 2e-21
Identities = 30/194 (15%), Positives = 51/194 (26%), Gaps = 44/194 (22%)
Query: 8 QVDTPPVILNNSTQLSVAKEGQSVQLECHAE-GHPIPTISWRRNFKRL------------ 54
+V P ++ + C + G P I+W + +
Sbjct: 113 RVLAKPQNTAEVQKVQLT-GEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSG 171
Query: 55 ------------GRLHLAIPYT---------SPEA-----QVDTPPVILNNSPQLSVAKE 88
T P+ V PP + + +
Sbjct: 172 TVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLG 231
Query: 89 GQSVQLECHAEGHPIPT-ISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQN 147
L C A +P PT +W LP G+ L I + K C N
Sbjct: 232 QNEATLTCDARSNPEPTGYNWST-TMGPLPPFAVA-QGAQLLIRPVDKPINTTLICNVTN 289
Query: 148 GIGRGARRKIEVKV 161
+G + ++ V+V
Sbjct: 290 ALGA-RQAELTVQV 302
Score = 82.8 bits (204), Expect = 5e-19
Identities = 24/176 (13%), Positives = 51/176 (28%), Gaps = 15/176 (8%)
Query: 69 QVDTPPVILNNSPQLSVAKEGQSVQLECHAE-GHPIPTISWRRENNAILPNGQ------- 120
+V P ++ + C + G P I+W + + Q
Sbjct: 113 RVLAKPQNTAEVQKVQLT-GEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSG 171
Query: 121 TIFTGSTLQIPRITKEDRGAYYCVAQNGIGRG-ARRKIEVKVEFAPIVTVQ-STRIGQAL 178
T+ S + ++ D C ++ + + V + P V++
Sbjct: 172 TVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLG 231
Query: 179 HHDMDLDCHIEAYPHPILY-WAKDGEIVVNDEYHSISNF---GTSEGTTGSLQCKV 230
++ L C + P P Y W+ + + + +L C V
Sbjct: 232 QNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQGAQLLIRPVDKPINTTLICNV 287
Score = 68.6 bits (167), Expect = 7e-14
Identities = 25/167 (14%), Positives = 45/167 (26%), Gaps = 28/167 (16%)
Query: 80 SPQLSVAKEGQSVQLECHAEGHPIPT-----ISWRRENNAI------------------- 115
+P G SV L C+ + + ++W R +
Sbjct: 6 APTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRL 65
Query: 116 ---LPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQST 172
++L++ + ED G Y C+ I ++V P T +
Sbjct: 66 EFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQ 125
Query: 173 RIGQALHHDMDLDCH-IEAYPHPILYWAKDGEIVVNDEYHSISNFGT 218
++ C P + W D + N GT
Sbjct: 126 KVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGT 172
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 86.5 bits (214), Expect = 2e-21
Identities = 29/175 (16%), Positives = 54/175 (30%), Gaps = 29/175 (16%)
Query: 10 DTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIP-TISWRRNFKRLGRLH--LAIPYTSP 66
D P ++ Q E SV L+C P + W N + I +
Sbjct: 4 DLPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSYFIDAATV 63
Query: 67 E-------------------AQVDTPPVILNNSPQLSVAKEGQSVQLECHA-EGHPIPTI 106
+V ++L V KE + L CH+ + + +
Sbjct: 64 NDSGEYRCQTNLSTLSDPVQLEVHIGWLLLQAPR--WVFKEEDPIHLRCHSWKNTALHKV 121
Query: 107 SWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161
++ + S IP+ T +D G+Y+C G + + + +
Sbjct: 122 TYLQNGKDRKYFHH----NSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITI 172
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 89.4 bits (221), Expect = 3e-21
Identities = 36/248 (14%), Positives = 67/248 (27%), Gaps = 60/248 (24%)
Query: 23 SVAKEGQSVQLEC-------HAEGHPIPTISWRRNFKRL-------GRLH-----LAIPY 63
EG+ V L C A P ++W +N R+ L +
Sbjct: 28 EFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLP 87
Query: 64 TSPE-------------------AQVD---TPPVILNNSPQLSVAKEGQSVQLECH---- 97
E ++ L + S L C
Sbjct: 88 ALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSE 147
Query: 98 -AEGHPIPTISWRRENNAILPNGQTIFT---GSTLQIPRITKEDRGAYYCVAQNGIGRG- 152
I W +++ + + + + + L + + ED G Y CV
Sbjct: 148 FTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQ 207
Query: 153 --ARRKIEVKV-----EFAPIVTVQSTRIGQALHHDMDLDCHIEA---YPHPILYWAKDG 202
R IE+++ E P++ I +L + + C + P + W
Sbjct: 208 YNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTAN 267
Query: 203 EIVVNDEY 210
+ + Y
Sbjct: 268 DTHIESAY 275
Score = 88.6 bits (219), Expect = 5e-21
Identities = 31/157 (19%), Positives = 51/157 (32%), Gaps = 19/157 (12%)
Query: 81 PQLSVAKEGQSVQLEC-------HAEGHPIPTISWRRENNAILPNGQ----TIFTGSTLQ 129
+ EG+ V L C A P ++W + ++A G+ L
Sbjct: 25 YKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALW 84
Query: 130 IPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALH-------HDM 182
+ +ED G Y C +N + IE++V + Q L
Sbjct: 85 LLPALQEDSGTYVCTTRNASYC-DKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCP 143
Query: 183 DLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTS 219
DL + W KD ++ D +S GT+
Sbjct: 144 DLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTT 180
Score = 65.9 bits (160), Expect = 6e-13
Identities = 28/217 (12%), Positives = 50/217 (23%), Gaps = 67/217 (30%)
Query: 12 PPVILNNSTQLSVAKEGQSVQLECH-----AEGHPIPTISWRRNFKRL-----------G 55
L + + S L C I W ++ L G
Sbjct: 119 TDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRG 178
Query: 56 RLHLAIPYTSPE-----------------------AQVDTPPVILNNSPQLSVAKEGQSV 92
HL + + E ++ P + + S
Sbjct: 179 TTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISA 238
Query: 93 Q------LECHA---EGHPIPTISWRRENNAILPNG-----------------QTIFTGS 126
+ C G P+ T+ W N+ + + +
Sbjct: 239 SLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEV 298
Query: 127 TLQIPRITKEDRGAYY-CVAQNGIGRGARRKIEVKVE 162
L +T+ED + CV N + + VK
Sbjct: 299 PLIFDPVTREDLHMDFKCVVHNTLSF-QTLRTTVKEH 334
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 89.4 bits (221), Expect = 3e-21
Identities = 28/151 (18%), Positives = 48/151 (31%), Gaps = 8/151 (5%)
Query: 76 ILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQ--TIFTGSTLQIPRI 133
L + G V L C EG + W L + +
Sbjct: 160 TLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANV 219
Query: 134 TKE-DRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYP 192
T + +R C A+N +GR A ++V V F V + + H + ++ P
Sbjct: 220 TSDLNRKNVTCWAENDVGR-AEVSVQVNVSFPASVQLHTAVE----MHHWCIPFSVDGQP 274
Query: 193 HPILYWAKDGEIVVNDEYHSISNFGTSEGTT 223
P L W +G ++ + + T
Sbjct: 275 APSLRWLFNGSVLNETSFIFTEFLEPAANET 305
Score = 81.3 bits (200), Expect = 2e-18
Identities = 28/191 (14%), Positives = 45/191 (23%), Gaps = 43/191 (22%)
Query: 15 ILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL------------GRLHLAIP 62
L + G V L C EG + W L L
Sbjct: 160 TLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTL-AN 218
Query: 63 YTS-----------------PEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPT 105
TS E V + + + + +G P P+
Sbjct: 219 VTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEM-HHWCIPFSVDGQPAPS 277
Query: 106 ISWRRENNAILPNG-----------QTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGAR 154
+ W + + L++ + T + G Y +A N G+ A
Sbjct: 278 LRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQ-AS 336
Query: 155 RKIEVKVEFAP 165
I P
Sbjct: 337 ASIMAAFMDNP 347
Score = 27.0 bits (59), Expect = 5.0
Identities = 12/73 (16%), Positives = 23/73 (31%), Gaps = 10/73 (13%)
Query: 165 PIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDG---------EIVVNDEYHSISN 215
P + VQ + D+ L C +E W + +++N
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLAN 218
Query: 216 FGTSEGTTGSLQC 228
TS+ ++ C
Sbjct: 219 -VTSDLNRKNVTC 230
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 88.6 bits (219), Expect = 3e-21
Identities = 20/186 (10%), Positives = 45/186 (24%), Gaps = 37/186 (19%)
Query: 12 PPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRLG-----RLHLAIPYTSP 66
+ + E + + C P ++ +
Sbjct: 94 GFLPNDAEELFIFLTEITEITIPCRVTD-PQLVVTLHEKKGDVALPVPYDHQRGFSGIFE 152
Query: 67 EA---------------------QVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPT 105
+ ++ + ++ + +V ++G+++ L C G+ +
Sbjct: 153 DRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVN 212
Query: 106 ISWRRENNAI---------LPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRG-ARR 155
W S L IP ED G Y C + +
Sbjct: 213 FEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEK 272
Query: 156 KIEVKV 161
I + V
Sbjct: 273 AINITV 278
Score = 77.4 bits (190), Expect = 3e-17
Identities = 19/230 (8%), Positives = 45/230 (19%), Gaps = 51/230 (22%)
Query: 14 VILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRLGRLH-----------LAIP 62
V+ +L + + L C + W R + + L +
Sbjct: 2 VVTPPGPELVL-NVSSTFVLTCSGSA----PVVWERMSQEPPQEMAKAQDGTFSSVLTLT 56
Query: 63 YTSPE---------------------------AQVDTPPVILNNSPQLSVAKEGQSVQLE 95
+ + + E + +
Sbjct: 57 NLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIP 116
Query: 96 CHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARR 155
C P ++ + + Q + +Y C G
Sbjct: 117 CRVTD-PQLVVTLHEKKGDVALPVP-----YDHQRGFSGIFEDRSYICKTTIGDREVDSD 170
Query: 156 KIEVKVEFAPIVTVQSTRIGQALH--HDMDLDCHIEAYPHPILYWAKDGE 203
V + V + + ++ L C + W +
Sbjct: 171 AYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRK 220
Score = 69.3 bits (169), Expect = 3e-14
Identities = 25/165 (15%), Positives = 48/165 (29%), Gaps = 15/165 (9%)
Query: 75 VILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTG---STLQIP 131
V+ P+L + + L C + W R + G S L +
Sbjct: 2 VVTPPGPELVL-NVSSTFVLTCSGSA----PVVWERMSQEPPQEMAKAQDGTFSSVLTLT 56
Query: 132 RITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAP------IVTVQSTRIGQALHHDMDLD 185
+T D G Y+C + G + + + + I ++ +
Sbjct: 57 NLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIP 116
Query: 186 CHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQCKV 230
C + + K G++ + Y F + S CK
Sbjct: 117 CRVTDPQLVVTLHEKKGDVALPVPYDHQRGF-SGIFEDRSYICKT 160
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 83.6 bits (207), Expect = 3e-21
Identities = 28/80 (35%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Query: 73 PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQ--TIFTGSTLQI 130
PP+IL P + L+C A G P+P ISW +E TI TLQI
Sbjct: 8 PPIILQ-GPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQI 66
Query: 131 PRITKEDRGAYYCVAQNGIG 150
+ D G Y CVA + G
Sbjct: 67 KNLRISDTGTYTCVATSSSG 86
Score = 31.2 bits (71), Expect = 0.073
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 184 LDCHIEAYPHPILYWAKDGE-IVVNDEYHSISNFGT 218
L C P P++ W K+G D +I GT
Sbjct: 28 LKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGT 63
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 85.9 bits (212), Expect = 5e-21
Identities = 29/176 (16%), Positives = 54/176 (30%), Gaps = 39/176 (22%)
Query: 23 SVAKEGQSVQLECHAEGHPIPTIS--WRRNFKRL-------GRLHLAI------------ 61
+V G + L C W + L + +
Sbjct: 8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVDSDDQWGEYSCV 67
Query: 62 ----PYTSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHP-IPTISWRRENN--- 113
P + Q+ PP + EG++ L C +E P + +W + +
Sbjct: 68 FLPEPMGTANIQLHGPPRVK-AVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSED 126
Query: 114 -AILPNGQTIFT------GSTLQIPRIT-KEDRGAYYCVAQNGIGRGARRKIEVKV 161
A++ ++ F S L I + + D G Y C + G + I ++V
Sbjct: 127 KALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGS-DQAIITLRV 181
Score = 77.8 bits (191), Expect = 4e-18
Identities = 19/123 (15%), Positives = 35/123 (28%), Gaps = 10/123 (8%)
Query: 84 SVAKEGQSVQLECHAEGHPIPTIS--WRRENNAILPNGQTIFTGSTLQIPRITKEDRGAY 141
+V G + L C W + +L G + + + G Y
Sbjct: 8 TVEDLGSKILLTCSLNDSATEVTGHRWLK-GGVVLKEDAL--PGQKTEFKVDSDDQWGEY 64
Query: 142 YCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILY-WAK 200
CV A ++ + + + G+ L C E+ P + W K
Sbjct: 65 SCVFLPEPMGTANIQLHGPPRVKAVKSSEHINEGE----TAMLVCKSESVPPVTDWAWYK 120
Query: 201 DGE 203
+
Sbjct: 121 ITD 123
Score = 26.9 bits (59), Expect = 4.8
Identities = 9/51 (17%), Positives = 15/51 (29%), Gaps = 6/51 (11%)
Query: 164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHPIL--YWAKDGEIVVNDEYHS 212
A V +G + L C + + W K G ++ D
Sbjct: 2 AGTVFTTVEDLGSKIL----LTCSLNDSATEVTGHRWLKGGVVLKEDALPG 48
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 83.7 bits (207), Expect = 5e-21
Identities = 29/103 (28%), Positives = 38/103 (36%), Gaps = 4/103 (3%)
Query: 73 PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNG--QTIFTGSTLQI 130
PPVI P + L C A G P+PTI WR++ + LQI
Sbjct: 8 PPVIRQG-PVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQI 66
Query: 131 PRITKEDRGAYYCVAQNGIGRG-ARRKIEVKVEFAPIVTVQST 172
D G Y C+A G IEV+ P+ + T
Sbjct: 67 RYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPT 109
Score = 32.4 bits (74), Expect = 0.039
Identities = 12/56 (21%), Positives = 17/56 (30%), Gaps = 1/56 (1%)
Query: 164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGE-IVVNDEYHSISNFGT 218
P++ A+ L C P P + W KDG + D G
Sbjct: 8 PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGV 63
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 82.8 bits (205), Expect = 8e-21
Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 2/85 (2%)
Query: 81 PQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGA 140
+ + G +QL C +I+W R+ + + +T TG +++ D G
Sbjct: 10 VESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGEEVEVQDSVPADSGL 68
Query: 141 YYCVAQNGIGRGARRKIEVKVEFAP 165
Y CV + G V V A
Sbjct: 69 YACVTSSPSGS-DTTYFSVNVSDAL 92
Score = 30.4 bits (69), Expect = 0.13
Identities = 8/52 (15%), Positives = 15/52 (28%), Gaps = 1/52 (1%)
Query: 164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISN 215
+ V+ + L C + I W +DG + I+
Sbjct: 3 SGSSGVEVESFLVHPGDLLQLRCRLRDDVQSIN-WLRDGVQLAESNRTRITG 53
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 82.4 bits (204), Expect = 1e-20
Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 6/99 (6%)
Query: 68 AQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNG----QTIF 123
++ IL P+ EG+S + C +G P+PT++W R+ + + T
Sbjct: 9 SKTTLAARILT-KPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTK 67
Query: 124 TGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE 162
ST +I + D G Y V +N G+ + + ++
Sbjct: 68 YKSTFEISSVQASDEGNYSVVVENSEGK-QEAEFTLTIQ 105
Score = 37.3 bits (87), Expect = 5e-04
Identities = 10/73 (13%), Positives = 24/73 (32%), Gaps = 12/73 (16%)
Query: 159 VKVEFAPIVTV----QSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSIS 214
K A + + G++ C + P P + W + G+++ H +
Sbjct: 9 SKTTLAARILTKPRSMTVYEGESAR----FSCDTDGEPVPTVTWLRKGQVLSTSARHQV- 63
Query: 215 NFGTSEGTTGSLQ 227
T+ + +
Sbjct: 64 ---TTTKYKSTFE 73
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 86.6 bits (214), Expect = 2e-20
Identities = 28/273 (10%), Positives = 65/273 (23%), Gaps = 71/273 (26%)
Query: 12 PPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL------------GRLHL 59
P + S+ EC + P SW +++ + +
Sbjct: 3 DPFTKEVVVNVDD-DGVISLNFECD-KMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKM 60
Query: 60 AIPYTSPE---------------------------------AQVDTPPVILNNSPQLSVA 86
+ + P V + + + +
Sbjct: 61 TFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEIL 120
Query: 87 KEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGS------TLQIPRITKEDRGA 140
++GQ + +++ I + + + ++ ED G
Sbjct: 121 EKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGT 180
Query: 141 YYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALH-----------------HDMD 183
Y Q+G + V F + + + + ++
Sbjct: 181 YTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVL 240
Query: 184 LDCHIEAY-PHPILYWAKDGEIVVNDEYHSISN 215
L C + + W KD + DE H +
Sbjct: 241 LKCKVANIKKETHIVWYKDEREISVDEKHDFKD 273
Score = 79.3 bits (195), Expect = 1e-17
Identities = 30/206 (14%), Positives = 62/206 (30%), Gaps = 56/206 (27%)
Query: 12 PPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL--------------GRL 57
P V + + + + ++GQ + +++ N K + G +
Sbjct: 107 PTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGII 166
Query: 58 HLAIP---------YT------------------------SPEAQVDTPPVILNNSPQLS 84
+ + YT EA+ I P
Sbjct: 167 EMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFV 226
Query: 85 -----VAKEGQSVQLECHAEGHPIPT-ISWRRENNAILPNGQTIFTG--STLQIPRITKE 136
+V L+C T I W ++ I + + F TL I +K+
Sbjct: 227 EYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKK 286
Query: 137 DRGAYYCVAQNGIGRGARRKIEVKVE 162
D G Y + ++ G+ + ++++ E
Sbjct: 287 DAGIYEVILKDDRGK-DKSRLKLVDE 311
Score = 34.6 bits (79), Expect = 0.019
Identities = 12/78 (15%), Positives = 22/78 (28%), Gaps = 13/78 (16%)
Query: 1 PYTSPESQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPT-ISWRRNFKRL----- 54
+ E P + + +V L+C T I W ++ + +
Sbjct: 211 EFQRQEWIRKQGPHFVEYLSW--EVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEK 268
Query: 55 -----GRLHLAIPYTSPE 67
G L I S +
Sbjct: 269 HDFKDGICTLLITEFSKK 286
Score = 28.8 bits (64), Expect = 1.6
Identities = 7/44 (15%), Positives = 14/44 (31%), Gaps = 5/44 (11%)
Query: 184 LDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQ 227
+C + P W+KD + + S+G +
Sbjct: 23 FECD-KMTPKSEFSWSKDYVSTEDSPRLEV----ESKGNKTKMT 61
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 84.1 bits (207), Expect = 3e-20
Identities = 29/146 (19%), Positives = 56/146 (38%), Gaps = 5/146 (3%)
Query: 85 VAKEGQSVQLECHAEGHPIPTISWRRENNAILPNG-QTIFTGSTLQIPRITKEDRGAYYC 143
+A+ G SV L C G P SWR + ++ L T STL + ++ + +Y C
Sbjct: 12 LAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLC 71
Query: 144 VAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIE-AYPHPIL--YWAK 200
A + + I+V++ P + + C + YP L K
Sbjct: 72 TATCESRK-LEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLK 130
Query: 201 DGEIVVNDEYHSISNFGTSEGTTGSL 226
++ + E+ ++ + E + +
Sbjct: 131 GDHLMKSQEFLEDADRKSLETKSLEV 156
Score = 72.1 bits (176), Expect = 1e-15
Identities = 29/192 (15%), Positives = 54/192 (28%), Gaps = 48/192 (25%)
Query: 24 VAKEGQSVQLECHAEGHPIPTISWRRN---------FKRLGRLHLAIPYTSPEA------ 68
+A+ G SV L C G P SWR L + S
Sbjct: 12 LAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLC 71
Query: 69 ---------------QVDTPPVILNNSPQLSVAKEGQSVQLECHAEGH---PIPTISWRR 110
++ + P + + G+ + ++C I +
Sbjct: 72 TATCESRKLEKGIQVEIYSFPKDPEIHLSGPL-EAGKPITVKCSVADVYPFDRLEIDLLK 130
Query: 111 ENNAI-------LPNGQTIFTGSTLQIPRITKEDRGAYY-CVAQNGIGRGA------RRK 156
++ + + +++ T S ED G C A+ I +
Sbjct: 131 GDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAV 190
Query: 157 IEVKVEFAPIVT 168
E++V +P T
Sbjct: 191 KELQVYISPKNT 202
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 80.8 bits (200), Expect = 4e-20
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 64 TSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF 123
+S + ++ P + + EGQ L+C G P+P I+W I T
Sbjct: 2 SSGSSGMEVAPSFSSV-LKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCE 60
Query: 124 TG-STLQIPRITKEDRGAYYCVAQNGIGR 151
G + L I ED G Y C+A+N +G+
Sbjct: 61 AGVAELHIQDALPEDHGTYTCLAENALGQ 89
Score = 39.2 bits (92), Expect = 1e-04
Identities = 11/65 (16%), Positives = 20/65 (30%), Gaps = 8/65 (12%)
Query: 158 EVKVEFAPIVTV----QSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSI 213
+E AP + + GQ L C + P P + W +G+ +
Sbjct: 5 SSGMEVAPSFSSVLKDCAVIEGQDFV----LQCSVRGTPVPRITWLLNGQPIQYARSTCE 60
Query: 214 SNFGT 218
+
Sbjct: 61 AGVAE 65
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 78.9 bits (195), Expect = 2e-19
Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 6/94 (6%)
Query: 73 PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT----GSTL 128
P IL + + K G + LE G P PT +W ++ + + +++
Sbjct: 2 KPKILT-ASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSI 60
Query: 129 QIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE 162
P + D G Y +N +G EV V+
Sbjct: 61 FFPSAKRADSGNYKLKVKNELGE-DEAIFEVIVQ 93
Score = 34.6 bits (80), Expect = 0.004
Identities = 4/36 (11%), Positives = 8/36 (22%)
Query: 184 LDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTS 219
L+ P P W + ++
Sbjct: 22 LEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSST 57
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 78.2 bits (193), Expect = 4e-19
Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 7/98 (7%)
Query: 65 SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT 124
S + ++ P+ G +V L C P P I W ++ + +
Sbjct: 2 SSGSSGLEEVQLVVE-PEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPL-----PLPP 55
Query: 125 GSTLQIPRITKEDRGAYYCVAQNGIGRG-ARRKIEVKV 161
L +P I +D+G Y CVA + R + + +
Sbjct: 56 SPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISI 93
Score = 51.6 bits (124), Expect = 4e-09
Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 4/67 (5%)
Query: 4 SPESQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL---GRLHLA 60
S S ++ +VA G +V L C P P I W ++ L L
Sbjct: 2 SSGSSGLEEVQLVVEPEGGAVA-PGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLI 60
Query: 61 IPYTSPE 67
+P P+
Sbjct: 61 LPEIGPQ 67
Score = 30.5 bits (69), Expect = 0.12
Identities = 11/49 (22%), Positives = 18/49 (36%)
Query: 164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHS 212
+ V+ A + L C + A P P ++W KDG +
Sbjct: 10 EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPV 58
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 81.1 bits (200), Expect = 5e-19
Identities = 31/187 (16%), Positives = 60/187 (32%), Gaps = 30/187 (16%)
Query: 10 DTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIP-TISWRRNFKRLGRLH--LAIPYTSP 66
D P ++ Q E SV L+C P + W N + I +
Sbjct: 4 DLPKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQASSYFIDAATV 63
Query: 67 EA-------------------QVDTPPVILNNSPQLSVAKEGQSVQLECHAE-GHPIPTI 106
+ +V ++L V KE + L CH+ + +
Sbjct: 64 DDSGEYRCQTQLSTLSDPVQLEVHIGWLLLQAPR--WVFKEEDPIHLRCHSWKNTALHKV 121
Query: 107 SWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV-EFAP 165
++ + S IP+ T +D G+Y+C G + +++ + +
Sbjct: 122 TYLQNGKGRKYFHH----NSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLA 177
Query: 166 IVTVQST 172
+ T+ S
Sbjct: 178 VSTISSF 184
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 77.8 bits (192), Expect = 8e-19
Identities = 25/108 (23%), Positives = 37/108 (34%), Gaps = 6/108 (5%)
Query: 62 PYTSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQT 121
P + +PP L P+ G +L+C G P P + W + + + +
Sbjct: 2 PMKASSGDQGSPPCFLR-FPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERL 60
Query: 122 IFT----GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAP 165
F L + D G Y C A+N G A V V P
Sbjct: 61 SFPADGAEHGLLLTAALPTDAGVYVCRARNAAGE-AYAAAAVTVLEPP 107
Score = 35.8 bits (83), Expect = 0.002
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 184 LDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQ 227
L C + P P++ W K G+ + E S ++G L
Sbjct: 33 LKCVVLGEPPPVVVWEKGGQQLAASERLSF----PADGAEHGLL 72
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 80.5 bits (198), Expect = 9e-19
Identities = 31/199 (15%), Positives = 52/199 (26%), Gaps = 54/199 (27%)
Query: 25 AKEGQSVQLECHAEGHPIPTISWRR-----------------NFKRLGRLH--------- 58
E +V L H + +W + N G+ +
Sbjct: 11 VAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSN 70
Query: 59 --LAIPYTSPE----------------------AQVDTPPVILNNSPQLSVAKEGQSVQL 94
L + + V P + KE SV L
Sbjct: 71 GSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTL 130
Query: 95 ECHAEGHPIPTISWRRENNAILPNGQTIFT--GSTLQIPRITKEDRGAYYCVAQNGIGRG 152
C + I W + ++ + + S L+I I +ED G Y C N +
Sbjct: 131 TCLSNDIG-ANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVR 189
Query: 153 ARRKIEVKVEFAP-IVTVQ 170
I++ + F P
Sbjct: 190 RSNSIKLDIIFDPHHHHHH 208
Score = 67.8 bits (165), Expect = 4e-14
Identities = 22/173 (12%), Positives = 44/173 (25%), Gaps = 29/173 (16%)
Query: 86 AKEGQSVQLECHAEGHPIPTISWRRENNAILP--------------------NGQTIFTG 125
E +V L H + +W + N + + I++
Sbjct: 11 VAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSN 70
Query: 126 STLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLD 185
+L IT +D G Y + R + + V D +
Sbjct: 71 GSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELD-SVT 129
Query: 186 CHIEAYPHPILY-WAKDGEIVVNDEYHSISN-------FGTSEGTTGSLQCKV 230
+ W + + + E ++S G QC++
Sbjct: 130 LTCLSNDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEI 182
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 78.1 bits (192), Expect = 1e-18
Identities = 28/110 (25%), Positives = 38/110 (34%), Gaps = 19/110 (17%)
Query: 69 QVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTG--- 125
+ + +P G SV+L C A G P+P I W E ++ G
Sbjct: 17 RGSHMAGFVQ-APLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARL 75
Query: 126 --------------STLQIPRITKEDRGAYYCVAQNGIGRG-ARRKIEVK 160
ST+ I + +ED G Y C A N R R VK
Sbjct: 76 DRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVK 125
Score = 27.7 bits (61), Expect = 2.2
Identities = 10/81 (12%), Positives = 22/81 (27%), Gaps = 14/81 (17%)
Query: 139 GAYYCVAQNGIGRGARRKIEVKVEFAPIVTV----QSTRIGQALHHDMDLDCHIEAYPHP 194
G+ + + G + + Q +G ++ L C P P
Sbjct: 2 GSSHHHHHHSSG------LVPRGSHMAGFVQAPLSQQRWVGGSVE----LHCEAVGSPVP 51
Query: 195 ILYWAKDGEIVVNDEYHSISN 215
+ W +G+ +
Sbjct: 52 EIQWWFEGQGPNDICSQLWDG 72
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 79.7 bits (196), Expect = 1e-18
Identities = 18/147 (12%), Positives = 33/147 (22%), Gaps = 26/147 (17%)
Query: 30 SVQLECHAEGHPIPTISWRRNFKRLGRLHL---------------AIPYTSPEAQVD--- 71
+ + P L + + T Q
Sbjct: 42 RMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSV 101
Query: 72 TPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAI----LPNGQ-TIFTGS 126
P+ L+ + S + + + C P P + W NG
Sbjct: 102 VKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDG 161
Query: 127 TLQI---PRITKEDRGAYYCVAQNGIG 150
+L + + K CV +N
Sbjct: 162 SLSVAVDLSLPKPWHLPVTCVGKNDKE 188
Score = 70.1 bits (171), Expect = 5e-15
Identities = 31/210 (14%), Positives = 53/210 (25%), Gaps = 47/210 (22%)
Query: 24 VAKEGQSVQLECHAE---GHPIPTISWRRNFKRLGRLHLAIPYTSPEAQVDTPPVILNNS 80
A G+ V L + P +SW +
Sbjct: 2 TAFLGERVTLTSYWRRVSLGPEIEVSWFKL-----------------------------G 32
Query: 81 PQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGA 140
P G + + P + L + G
Sbjct: 33 PGEEQVLIG-RMHHDVIFIEWPFRGFFDIHRSA----------NTFFLVVTAANISHDGN 81
Query: 141 YYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAK 200
Y C + G ++ + V ++V S R + + C + A+PHP + W
Sbjct: 82 YLCRMKLGETE-VTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLM 140
Query: 201 DGEIVVNDEYHSISNFGTSEGTTGSLQCKV 230
+ +N G + GSL V
Sbjct: 141 PEGVEPAPTA---ANGGVMKEKDGSLSVAV 167
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 79.9 bits (197), Expect = 2e-18
Identities = 25/174 (14%), Positives = 56/174 (32%), Gaps = 30/174 (17%)
Query: 80 SPQLSVAKEGQSVQLECH-AEGHPIPTISWRRENNAILPNGQTIFT----GSTLQIPRIT 134
+ L + + +QL ++W +AI + + LQI T
Sbjct: 8 ATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPT 67
Query: 135 KEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMD----------- 183
D+G Y +G ++ +++ + + R+ QA + +
Sbjct: 68 PNDKGKYVMELFDGKTG-HQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDV 126
Query: 184 ----------LDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQ 227
L C++ P P + W K+ + + ++ ++ G T
Sbjct: 127 VTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKF---EAGRTAYFT 177
Score = 78.4 bits (193), Expect = 5e-18
Identities = 31/204 (15%), Positives = 57/204 (27%), Gaps = 62/204 (30%)
Query: 19 STQLSVAKEGQSVQLECH-AEGHPIPTISWRRNFKRL------------GRLHLAIPYTS 65
+T L + + +QL ++W N + ++ L I +
Sbjct: 8 ATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPT 67
Query: 66 PE------------------------------------------AQVDTPPVILNNSPQL 83
P A+ + V+ P +
Sbjct: 68 PNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGG-LPDV 126
Query: 84 SVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT-----GSTLQIPRITKEDR 138
+EG+++ L C+ G P P +SW + A+ + I ++ D
Sbjct: 127 VTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADS 186
Query: 139 GAYYCVAQNGIGRGARRKIEVKVE 162
G Y V +N G V V
Sbjct: 187 GKYGLVVKNKYGS-ETSDFTVSVF 209
Score = 44.9 bits (106), Expect = 5e-06
Identities = 11/47 (23%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 4 SPESQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRN 50
+ ++ + V+ +++ +EG+++ L C+ G P P +SW +N
Sbjct: 109 AAIAEKNRARVLGGLPDVVTI-QEGKALNLTCNVWGDPPPEVSWLKN 154
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 77.2 bits (190), Expect = 2e-18
Identities = 30/115 (26%), Positives = 45/115 (39%), Gaps = 15/115 (13%)
Query: 69 QVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIP-TISWRRENNAILPNGQTIFTG-- 125
V+ PP+I +S Q A G+ Q++C P P I+W + N + +T
Sbjct: 10 TVNGPPII--SSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVET 67
Query: 126 --------STLQIPRITKEDRGAYY-CVAQNGIGRGARRKIEVKVEFAPIVTVQS 171
STL I I + D Y C A N G I +K + + + S
Sbjct: 68 ISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGS-DTEIIRLKEQGSEMSGPSS 121
Score = 46.8 bits (111), Expect = 4e-07
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 8 QVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIP-TISWRRNFKRL 54
V+ PP+I + TQ A G+ Q++C P P I+W L
Sbjct: 10 TVNGPPIISSTQTQ--HALHGEKGQIKCFIRSTPPPDRIAWSWKENVL 55
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 76.6 bits (189), Expect = 2e-18
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 5/85 (5%)
Query: 70 VDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT----G 125
+ + PVI+ Q + + A G P PT W ++ AI G+ + G
Sbjct: 3 ISSKPVIVTG-LQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGG 61
Query: 126 STLQIPRITKEDRGAYYCVAQNGIG 150
L+I + D G Y C +N G
Sbjct: 62 FFLEIHKTDTSDSGLYTCTVKNSAG 86
Score = 35.0 bits (81), Expect = 0.003
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 184 LDCHIEAYPHPILYWAKDGEIVVNDEYHSISN 215
P P W KDG+ + + +S
Sbjct: 26 FAVKATGEPRPTAIWTKDGKAITQGGKYKLSE 57
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 76.7 bits (189), Expect = 2e-18
Identities = 30/111 (27%), Positives = 41/111 (36%), Gaps = 8/111 (7%)
Query: 65 SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT 124
+ P+ + PQ EG SV+LEC P P + W+R N + N I
Sbjct: 7 HHSHEHKRAPMFIYK-PQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISL 65
Query: 125 ------GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTV 169
TL I + K+D G Y A N G + V P T+
Sbjct: 66 YQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGV-TTCNTRLDVTARPNQTL 115
Score = 32.8 bits (75), Expect = 0.031
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 184 LDCHIEAYPHPILYWAKDG-EIVVNDEYHSISNFGTSEGT 222
L+C I A P P L+W ++ + N + S+ T T
Sbjct: 35 LECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVT 74
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 76.2 bits (188), Expect = 3e-18
Identities = 23/97 (23%), Positives = 34/97 (35%), Gaps = 8/97 (8%)
Query: 72 TPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT------G 125
PP I P EG+ + + C G P P ++W I Q F
Sbjct: 4 IPPKIEA-LPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDL 62
Query: 126 STLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE 162
+TL I + K+D G Y N G + + +
Sbjct: 63 TTLIIMDVQKQDGGLYTLSLGNEFGS-DSATVNIHIR 98
Score = 31.9 bits (73), Expect = 0.036
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 184 LDCHIEAYPHPILYWAKDGEIVVNDEYHSIS 214
+ C P P + W+ G + + E
Sbjct: 25 VACAFTGEPTPEVTWSCGGRKIHSQEQGRFH 55
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 75.6 bits (186), Expect = 4e-18
Identities = 20/98 (20%), Positives = 34/98 (34%), Gaps = 9/98 (9%)
Query: 72 TPPVILN---NSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNG-----QTIF 123
P N +L +V+ C A G+P+PT+ W + +
Sbjct: 3 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRN 62
Query: 124 TGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161
+L + + D+G Y CV +N G + V
Sbjct: 63 QHWSLIMESVVPSDKGNYTCVVENEYGS-INHTYHLDV 99
Score = 31.6 bits (72), Expect = 0.048
Identities = 6/61 (9%), Positives = 16/61 (26%)
Query: 162 EFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEG 221
+ ++ + + C P P + W K+G+ +
Sbjct: 6 YWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHW 65
Query: 222 T 222
+
Sbjct: 66 S 66
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 77.6 bits (191), Expect = 5e-18
Identities = 25/165 (15%), Positives = 52/165 (31%), Gaps = 29/165 (17%)
Query: 85 VAKEGQSVQLECH--AEGHPIPTISWRRENN----AILPNGQTIFTGS---------TLQ 129
GQ + L+ I I W + ++ A + F TL+
Sbjct: 10 WGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLK 69
Query: 130 IPRITKEDRGAYYCVAQNGIGRG-ARRKIEVKVEFA---PIVTVQSTRIGQALHHDMDLD 185
I + +D+ Y + G+ + ++K++ P ++ L
Sbjct: 70 IKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISWTCINT--------TLT 121
Query: 186 CHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQCKV 230
C + P L +DG+ + + + TS + +C
Sbjct: 122 CEVMNGTDPELNLYQDGKHLKLSQRVITHKWTTSL--SAKFKCTA 164
Score = 36.4 bits (84), Expect = 0.003
Identities = 3/28 (10%), Positives = 10/28 (35%)
Query: 23 SVAKEGQSVQLECHAEGHPIPTISWRRN 50
++ + L C P ++ ++
Sbjct: 110 KISWTCINTTLTCEVMNGTDPELNLYQD 137
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 75.4 bits (186), Expect = 6e-18
Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 6/99 (6%)
Query: 71 DTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT----GS 126
+ P I+ P+ + G+SV+L G T +W + I + GS
Sbjct: 5 SSGPQIIQ-FPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGS 63
Query: 127 TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAP 165
L I +E G Y + +N +G + ++ + V P
Sbjct: 64 KLTILAARQEHCGCYTLLVENKLGS-RQAQVNLTVVDKP 101
Score = 34.6 bits (80), Expect = 0.005
Identities = 5/36 (13%), Positives = 10/36 (27%)
Query: 184 LDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTS 219
L + W K + + E+ + N
Sbjct: 27 LFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENG 62
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 75.0 bits (185), Expect = 6e-18
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 7/96 (7%)
Query: 72 TPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGS----- 126
PP S +EGQ V + +G P P +SW R + P+ + +
Sbjct: 4 APPTFKV-SLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLC 62
Query: 127 TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE 162
L+I + D G Y C A N G + + ++V
Sbjct: 63 RLRILAAERGDAGFYTCKAVNEYGA-RQCEARLEVR 97
Score = 34.2 bits (79), Expect = 0.007
Identities = 8/44 (18%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 184 LDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQ 227
+ ++ P P++ W ++ + V D+ +EG L+
Sbjct: 25 MSIRVQGEPKPVVSWLRNRQPVRPDQRRFAE---EAEGGLCRLR 65
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 75.5 bits (186), Expect = 7e-18
Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 6/97 (6%)
Query: 70 VDTPPVIL--NNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT--- 124
+ PP I + Q + K G+ + L +G P P + W + + + + T
Sbjct: 18 IAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDF 77
Query: 125 GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161
+ + + + D G Y Q + I ++V
Sbjct: 78 DTVFFVRQAARSDSGEYELSVQIENMK-DTATIRIRV 113
Score = 34.3 bits (79), Expect = 0.009
Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 7/64 (10%)
Query: 156 KIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISN 215
KI + ++G+ L+ L + P P + W K G + H ++
Sbjct: 23 KIRLPRHLRQTYIR---KVGEQLN----LVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTS 75
Query: 216 FGTS 219
+
Sbjct: 76 DFDT 79
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 75.1 bits (185), Expect = 9e-18
Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 7/101 (6%)
Query: 70 VDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT----- 124
P L +P +EG+ +++C G P P +SW+ + + P+
Sbjct: 6 SGFRPHFLQ-APGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENG 64
Query: 125 GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAP 165
+L I +T D G Y C+A N G+ +E+ V
Sbjct: 65 VHSLIIEPVTSRDAGIYTCIATNRAGQ-NSFSLELVVAAKE 104
Score = 35.4 bits (82), Expect = 0.003
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 184 LDCHIEAYPHPILYWAKDGEIVVNDEYHSI 213
+DC + P P L W DG+ V D H +
Sbjct: 29 MDCKVSGLPTPDLSWQLDGKPVRPDSAHKM 58
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 77.6 bits (191), Expect = 1e-17
Identities = 26/124 (20%), Positives = 41/124 (33%), Gaps = 15/124 (12%)
Query: 63 YTSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTI 122
P P + P EG V + C +P TISW R+ + + +
Sbjct: 9 ALVPRGSHMYAPKL--QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSN 66
Query: 123 FT------GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAP------IVTVQ 170
S L++ ++ D G Y C A N IG+ + + P V
Sbjct: 67 IKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQ-ESLEFILVQADTPSSPSIDQVEPY 125
Query: 171 STRI 174
S+
Sbjct: 126 SSTA 129
Score = 40.6 bits (95), Expect = 1e-04
Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 14/88 (15%)
Query: 139 GAYYCVAQNGIGRGARRKIEVKVEFAPIVTV---QSTRIGQALHHDMDLDCHIEAYPHPI 195
Y + + R +AP + T G ++ + C + AYP
Sbjct: 1 ATYAAASSALVPR-------GSHMYAPKLQGPVAVYTWEGNQVN----ITCEVFAYPSAT 49
Query: 196 LYWAKDGEIVVNDEYHSISNFGTSEGTT 223
+ W +DG+++ + Y +I + T +
Sbjct: 50 ISWFRDGQLLPSSNYSNIKIYNTPSASY 77
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 79.0 bits (194), Expect = 1e-17
Identities = 30/217 (13%), Positives = 59/217 (27%), Gaps = 65/217 (29%)
Query: 9 VDTPPVILNNSTQLS--VAKEGQSVQLECH------AEGHPIPTISWRRNFKRL------ 54
V+ P + N+ + L C E + +P + W ++ K L
Sbjct: 97 VENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIH 156
Query: 55 ---GRLHLAIPYTSPE------------------------------AQVDTPPVILNNSP 81
+ L + + + T PVI++ +
Sbjct: 157 FSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPAN 216
Query: 82 QLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTG---------------- 125
+ G +QL C+ G W+ + I + +
Sbjct: 217 ETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLI 276
Query: 126 STLQIPRITKED-RGAYYCVAQNGIGRGARRKIEVKV 161
+ L I I + + C A+N G I++
Sbjct: 277 TVLNISEIESRFYKHPFTCFAKNTHGI-DAAYIQLIY 312
Score = 72.1 bits (176), Expect = 4e-15
Identities = 29/153 (18%), Positives = 46/153 (30%), Gaps = 16/153 (10%)
Query: 81 PQLSVAKEGQSVQLECHAEGHP-IPTISWRRENNAILPNGQ----TIFTGSTLQIPRITK 135
+ V+ + C + TI+W ++++ + + L
Sbjct: 12 KIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKV 71
Query: 136 EDRGAYYCVAQNGIGRGARRKIEVKV--------EFAPIVTVQSTRIGQ--ALHHDMDLD 185
ED G YYCV +N R KI K A + Q + L
Sbjct: 72 EDSGHYYCVVRNSSYC-LRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEF 130
Query: 186 CHIEAYPHPILYWAKDGEIVVNDEYHSISNFGT 218
E P L W KD + ++ D H
Sbjct: 131 FKNENNELPKLQWYKDCKPLLLDNIHFSGVKDR 163
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 79.0 bits (195), Expect = 3e-17
Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 5/93 (5%)
Query: 73 PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQ----TIFTGSTL 128
I + Q EG +VQ C A+G P P I W ++ T+F TL
Sbjct: 384 RARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTL 443
Query: 129 QIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161
++ +D G Y C+A N G + V
Sbjct: 444 EVRYAQVQDNGTYLCIAANAGGN-DSMPAHLHV 475
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 72.7 bits (179), Expect = 5e-17
Identities = 19/98 (19%), Positives = 34/98 (34%), Gaps = 6/98 (6%)
Query: 69 QVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGS-- 126
+D P I + GQ+ + + + P + W + + + +T +
Sbjct: 4 TLDHAPRITLR-MRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSG 62
Query: 127 --TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE 162
TL+I +D G Y V N G A + V
Sbjct: 63 VLTLEILDCHTDDSGTYRAVCTNYKGE-ASDYATLDVT 99
Score = 35.7 bits (83), Expect = 0.002
Identities = 9/61 (14%), Positives = 21/61 (34%), Gaps = 8/61 (13%)
Query: 159 VKVEFAPIVTV----QSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSIS 214
++ AP +T+ GQ ++++ P + W +G + +
Sbjct: 3 FTLDHAPRITLRMRSHRVPCGQNTR----FILNVQSKPTAEVKWYHNGVELQESSKIHYT 58
Query: 215 N 215
N
Sbjct: 59 N 59
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 72.7 bits (179), Expect = 6e-17
Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 7/95 (7%)
Query: 73 PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT-----GST 127
PP + P+ EG+ +++ G P P +SW + + +
Sbjct: 5 PPRFIQ-VPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHS 63
Query: 128 LQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE 162
L + D GAY CVA+N G A +++ V
Sbjct: 64 LIFEVVRASDAGAYACVAKNRAGE-ATFTVQLDVL 97
Score = 37.7 bits (88), Expect = 4e-04
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 184 LDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQ 227
+D + P P + W +G V +D+ H + SE SL
Sbjct: 25 MDFKVSGLPAPDVSWYLNGRTVQSDDLHKMI---VSEKGLHSLI 65
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 72.5 bits (178), Expect = 6e-17
Identities = 18/105 (17%), Positives = 31/105 (29%), Gaps = 14/105 (13%)
Query: 70 VDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT----- 124
V P I L + +G+P P + W + +
Sbjct: 1 VHFAPTIT----FLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTN 56
Query: 125 ----GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAP 165
LQ+ T + G Y +A+N G+ ++I P
Sbjct: 57 HTEYHGCLQLDNPTHMNNGDYTLIAKNEYGK-DEKQISAHFMGWP 100
Score = 41.3 bits (97), Expect = 2e-05
Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 4/68 (5%)
Query: 161 VEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSE 220
V FAP +T H + ++ P P L W +G I+ +Y T+
Sbjct: 1 VHFAPTITFLE---SPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNH 57
Query: 221 -GTTGSLQ 227
G LQ
Sbjct: 58 TEYHGCLQ 65
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 75.4 bits (185), Expect = 6e-17
Identities = 27/196 (13%), Positives = 57/196 (29%), Gaps = 56/196 (28%)
Query: 22 LSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL--------------GRLHLAIP----- 62
+ + ++GQ + +++ N K + G + + +
Sbjct: 12 VEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDE 71
Query: 63 ----YT------------------------SPEAQVDTPPVILNNSPQLSV-----AKEG 89
YT EA+ I P
Sbjct: 72 DEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGE 131
Query: 90 QSVQLECHAEGH-PIPTISWRRENNAILPNGQTIFTG--STLQIPRITKEDRGAYYCVAQ 146
+V L+C I W ++ I + + F TL I +K+D G Y + +
Sbjct: 132 CNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILK 191
Query: 147 NGIGRGARRKIEVKVE 162
+ G+ + ++++ E
Sbjct: 192 DDRGK-DKSRLKLVDE 206
Score = 69.6 bits (170), Expect = 8e-15
Identities = 22/157 (14%), Positives = 48/157 (30%), Gaps = 24/157 (15%)
Query: 83 LSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGS------TLQIPRITKE 136
+ + ++GQ + +++ I + + + ++ E
Sbjct: 12 VEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDE 71
Query: 137 DRGAYYCVAQNGIGR---------GARRKIEVKVEF--APIVTVQSTRIGQALH------ 179
D G Y Q+G +K++ + EF + Q + L
Sbjct: 72 DEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGE 131
Query: 180 HDMDLDCHIEAY-PHPILYWAKDGEIVVNDEYHSISN 215
++ L C + + W KD + DE H +
Sbjct: 132 CNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKD 168
Score = 36.8 bits (85), Expect = 0.003
Identities = 11/78 (14%), Positives = 21/78 (26%), Gaps = 13/78 (16%)
Query: 1 PYTSPESQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGH-PIPTISWRRNFKRL----- 54
+ E P + + +V L+C I W ++ + +
Sbjct: 106 EFQRQEWIRKQGPHFVEYLSW--EVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEK 163
Query: 55 -----GRLHLAIPYTSPE 67
G L I S +
Sbjct: 164 HDFKDGICTLLITEFSKK 181
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 74.7 bits (183), Expect = 1e-16
Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 5/96 (5%)
Query: 69 QVDTPPVILNNSPQLSVAKEGQSVQLECHA-EGHPIPTISWRRENNAILPNGQTIF--TG 125
V P + G +L+C EG W++ +++ + T
Sbjct: 117 TVLVKPSGTR-CFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTS 175
Query: 126 STLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161
+ + + E G Y C QN +G + + + V
Sbjct: 176 PVISVKNASSEYSGTYSCTVQNRVG-SDQCMLRLDV 210
Score = 67.0 bits (163), Expect = 8e-14
Identities = 29/191 (15%), Positives = 50/191 (26%), Gaps = 41/191 (21%)
Query: 80 SPQLSVAKEGQSVQLECHAEGHPIPT----ISWRRENNAILPNGQTIFT----------- 124
Q +G++ L C P I W + Q I
Sbjct: 6 PEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYY 65
Query: 125 -----------------GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIV 167
+++ + + D G Y C + G A +K + V P
Sbjct: 66 PDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGV-ANKKFLLTVLVKPSG 124
Query: 168 TVQSTRIGQALHHDMDLDCH-IEAYPHPILYWAKDGE-IVVNDEYHSISNFGT------S 219
T + + +D L C E W K + + + + S
Sbjct: 125 TRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNAS 184
Query: 220 EGTTGSLQCKV 230
+G+ C V
Sbjct: 185 SEYSGTYSCTV 195
Score = 41.2 bits (96), Expect = 1e-04
Identities = 9/44 (20%), Positives = 14/44 (31%), Gaps = 2/44 (4%)
Query: 8 QVDTPPVILNNSTQLSVAKEGQSVQLECHA-EGHPIPTISWRRN 50
V P S + G +L+C EG W++
Sbjct: 117 TVLVKPSGTRCFVDGSE-EIGNDFKLKCEPKEGSLPLQFEWQKL 159
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 72.0 bits (177), Expect = 1e-16
Identities = 23/85 (27%), Positives = 30/85 (35%), Gaps = 7/85 (8%)
Query: 73 PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNG--QTIFTGS---- 126
P + EG V C G+P P I W ++ I P TI
Sbjct: 8 APFFEM-KLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTC 66
Query: 127 TLQIPRITKEDRGAYYCVAQNGIGR 151
+L T +D G Y +A N GR
Sbjct: 67 SLHTTASTLDDDGNYTIMAANPQGR 91
Score = 34.6 bits (80), Expect = 0.005
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 184 LDCHIEAYPHPILYWAKDG-EIVVNDEYHSISN 215
C + P P +YW KDG +I ++++I
Sbjct: 28 FTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQR 60
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 72.0 bits (176), Expect = 9e-16
Identities = 24/170 (14%), Positives = 44/170 (25%), Gaps = 42/170 (24%)
Query: 24 VAKEGQSVQLECHAEGHPIPTISWRRNFKRL---------------------GRLHLAIP 62
G SV LEC + + R + G+ IP
Sbjct: 13 TVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIP 72
Query: 63 -------------------YTSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPI 103
+ V + ++ VQL C A G+P+
Sbjct: 73 SVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQARGYPL 132
Query: 104 PTISWRRENNAILPNGQTIFTG--STLQIPRITKEDRGAYYCVAQNGIGR 151
+SW+ + + G + R+ + + C+ N +
Sbjct: 133 AEVSWQNVSVPANTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMK 182
Score = 70.1 bits (171), Expect = 5e-15
Identities = 26/166 (15%), Positives = 46/166 (27%), Gaps = 22/166 (13%)
Query: 85 VAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTG-------------STLQIP 131
G SV LEC + + R + + N ++ + + IP
Sbjct: 13 TVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIP 72
Query: 132 RITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAY 191
+ D G Y C+ G + + VKV+ + + ++ L C Y
Sbjct: 73 SVQVRDSGQYRCLVICGAAWD-YKYLTVKVKASYMRIDTRILEVPG-TGEVQLTCQARGY 130
Query: 192 PHPILYWAKDGEIVVNDE-------YHSISNFGTSEGTTGSLQCKV 230
P + W Y S + + C
Sbjct: 131 PLAEVSWQNVSVPANTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMF 176
Score = 38.9 bits (90), Expect = 5e-04
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 8 QVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRN 50
V + T++ VQL C A G+P+ +SW+
Sbjct: 98 TVKVKASYMRIDTRILEVPGTGEVQLTCQARGYPLAEVSWQNV 140
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 70.7 bits (173), Expect = 1e-15
Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 6/92 (6%)
Query: 65 SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT 124
E + P EG + + +C EG+P P + W +++N + +
Sbjct: 33 VAEEKPHVKPYFTKT-ILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQID 91
Query: 125 -----GSTLQIPRITKEDRGAYYCVAQNGIGR 151
+L I + +D Y C A N +G
Sbjct: 92 YDEEGNCSLTISEVCGDDDAKYTCKAVNSLGE 123
Score = 43.3 bits (102), Expect = 9e-06
Identities = 18/92 (19%), Positives = 24/92 (26%), Gaps = 11/92 (11%)
Query: 130 IPRITKEDRGAYYCVAQNGIGRGA---RRKIEVKVEFAPIVTV----QSTRIGQALHHDM 182
+ + N + E K P T G A
Sbjct: 4 MSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAAR--- 60
Query: 183 DLDCHIEAYPHPILYWAKDGEIVVNDEYHSIS 214
DC +E YP P + W KD V + I
Sbjct: 61 -FDCKVEGYPDPEVMWFKDDNPVKESRHFQID 91
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 68.8 bits (169), Expect = 2e-15
Identities = 17/83 (20%), Positives = 24/83 (28%), Gaps = 6/83 (7%)
Query: 73 PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT-----GST 127
P I Q +G G P P W + I + + +
Sbjct: 5 APKIFER-IQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE 63
Query: 128 LQIPRITKEDRGAYYCVAQNGIG 150
L I +T ED + A N G
Sbjct: 64 LVIRDVTGEDSASIMVKAINIAG 86
Score = 42.6 bits (101), Expect = 7e-06
Identities = 12/69 (17%), Positives = 17/69 (24%), Gaps = 14/69 (20%)
Query: 12 PPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRN-------------FKRLGRLH 58
P I +V +G G P P W +N +
Sbjct: 5 APKIFERIQSQTVG-QGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE 63
Query: 59 LAIPYTSPE 67
L I + E
Sbjct: 64 LVIRDVTGE 72
Score = 31.9 bits (73), Expect = 0.042
Identities = 5/31 (16%), Positives = 9/31 (29%)
Query: 184 LDCHIEAYPHPILYWAKDGEIVVNDEYHSIS 214
+ P P W K+G + +
Sbjct: 25 FRVRVVGKPDPECEWYKNGVKIERSDRIYWY 55
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 67.5 bits (165), Expect = 7e-15
Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 13/105 (12%)
Query: 69 QVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPN--------GQ 120
V PP ++ L + +E G+P PT+ W + + +
Sbjct: 4 TVYYPPRVV----SLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQE 59
Query: 121 TIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAP 165
+ L + T + G Y +A+N +G A + I P
Sbjct: 60 GEISEGCLLFNKPTHYNNGNYTLIAKNPLGT-ANQTINGHFLKEP 103
Score = 46.0 bits (109), Expect = 7e-07
Identities = 12/71 (16%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Query: 157 IEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNF 216
+ + V + P V + L + ++ + P P L+W +G+ + + + +
Sbjct: 1 VALTVYYPPRVV---SLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYY 57
Query: 217 GTSEGTTGSLQ 227
E + G L
Sbjct: 58 QEGEISEGCLL 68
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 66.6 bits (163), Expect = 8e-15
Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 85 VAKEGQSVQLECHAEGHPIPT-ISWRRENNAILPNG--QTIFTG--STLQIPRITKEDRG 139
V +EG V+ C E + T ++W + + + + + L + ITK D G
Sbjct: 12 VGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDG 71
Query: 140 AYYCVAQNGIGRGARRKIEVKVE 162
Y C N G E+ V+
Sbjct: 72 TYRCKVVNDYGE-DSSYAELFVK 93
Score = 29.6 bits (67), Expect = 0.27
Identities = 8/33 (24%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 184 LDCHIEAYPHPI-LYWAKDGEIVVNDEYHSISN 215
C IE Y + W + N E + I+
Sbjct: 21 YVCKIENYDQSTQVTWYFGVRQLENSEKYEITY 53
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 68.4 bits (167), Expect = 1e-14
Identities = 24/164 (14%), Positives = 47/164 (28%), Gaps = 19/164 (11%)
Query: 80 SPQLSVAKEGQSVQLECH--AEGHPIPTISWRRENNAIL----------PNG-QTIFTGS 126
G + L I + W R + + +G I
Sbjct: 2 DSGTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANG 61
Query: 127 TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDC 186
L+I +T++D G Y + G K + + +V+ + L C
Sbjct: 62 DLKIKNLTRDDSGTYNVTVYSTNGTRILNK-ALDLRILEMVSKPMIYWE---CSNATLTC 117
Query: 187 HIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQCKV 230
+ L + E + + ++S T+ +CK
Sbjct: 118 EVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNL--RAPFKCKA 159
Score = 54.2 bits (130), Expect = 2e-09
Identities = 13/166 (7%), Positives = 33/166 (19%), Gaps = 45/166 (27%)
Query: 24 VAKEGQSVQLECH--AEGHPIPTISWRRNFKRLGRLHLAIPYTSPEAQVDTPP------- 74
G + L I + W R + + +
Sbjct: 7 WGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIK 66
Query: 75 -----------VILNNS------------------PQLSVAKEGQSVQLECHAEGHPIPT 105
V + ++ + + E + L C
Sbjct: 67 NLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPMIYWECSNATLTCEVLEGTDVE 126
Query: 106 ISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGR 151
+ + + + + + R + C A N + +
Sbjct: 127 LKLYQ-------GKEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQ 165
Score = 31.1 bits (70), Expect = 0.17
Identities = 6/52 (11%), Positives = 18/52 (34%), Gaps = 3/52 (5%)
Query: 20 TQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL---GRLHLAIPYTSPEA 68
++ + E + L C + + + L + ++ +T+ A
Sbjct: 102 SKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNLRA 153
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 66.3 bits (161), Expect = 2e-14
Identities = 25/113 (22%), Positives = 41/113 (36%), Gaps = 16/113 (14%)
Query: 73 PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNA--------------ILPN 118
V+L+ S + + G+ + L C A I + E +
Sbjct: 8 YDVVLSPSHGIEL-SVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSG 66
Query: 119 GQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQS 171
+ STL I +T+ D+G Y C A +G+ + V+V P V S
Sbjct: 67 SEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMT-KKNSTFVRVHEKPFVAFGS 118
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 70.3 bits (172), Expect = 2e-14
Identities = 16/87 (18%), Positives = 27/87 (31%), Gaps = 4/87 (4%)
Query: 78 NNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQT---IFTGSTLQIPRIT 134
A G ++ + C + + + N +L G L ++
Sbjct: 250 EYKESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQ 309
Query: 135 KEDRGAYYCVAQNGIGRGARRKIEVKV 161
ED G Y C A +E+KV
Sbjct: 310 VEDGGVYTCYAMGETFN-ETLSVELKV 335
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 69.8 bits (171), Expect = 4e-14
Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 8/102 (7%)
Query: 65 SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQ---- 120
PVI+ L+V EG + +L+C A + ++SW N ++ +G
Sbjct: 333 DQNYFTCYAPVIVEPPADLNVT-EGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVR 390
Query: 121 -TIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161
+ + TL +T +D G Y C+ N +G + V
Sbjct: 391 IAVLSDGTLNFTNVTVQDTGMYTCMVSNSVGN-TTASATLNV 431
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 67.5 bits (164), Expect = 5e-14
Identities = 28/205 (13%), Positives = 54/205 (26%), Gaps = 52/205 (25%)
Query: 12 PPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL------------GRLHL 59
V + + ++V + C +S + +
Sbjct: 8 ASVSDQHGVVYITENKNKTVVIPCLG-SISNLNVSLCARYPEKRFVPDGNRISWDSKKGF 66
Query: 60 AIPYTSP--------EAQVD----------------TPPVILNNSPQLSVAKEGQSVQLE 95
IP EA+++ ++ + G+ + L
Sbjct: 67 TIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLN 126
Query: 96 CHAEGHPIPTISWR--------------RENNAILPNGQTIFTGSTLQIPRITKEDRGAY 141
C A I + + + STL I +T+ D+G Y
Sbjct: 127 CTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLY 186
Query: 142 YCVAQNGIGRGARRKIEVKVEFAPI 166
C A +G+ + V+V PI
Sbjct: 187 TCAASSGLMT-KKNSTFVRVHEDPI 210
Score = 59.8 bits (144), Expect = 4e-11
Identities = 21/144 (14%), Positives = 38/144 (26%), Gaps = 10/144 (6%)
Query: 73 PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNA--ILPNGQTIF--TGSTL 128
V + + ++V + C +S +P+G I +
Sbjct: 8 ASVSDQHGVVYITENKNKTVVIPCLG-SISNLNVSLCARYPEKRFVPDGNRISWDSKKGF 66
Query: 129 QIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQ---STRIGQALHHDMDLD 185
IP G +C A+ V V I V S I ++ + L+
Sbjct: 67 TIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLN 126
Query: 186 CHIEAYPHP--ILYWAKDGEIVVN 207
C + W +
Sbjct: 127 CTARTELNVGIDFNWEYPSSKHQH 150
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 68.6 bits (168), Expect = 1e-13
Identities = 20/102 (19%), Positives = 41/102 (40%), Gaps = 9/102 (8%)
Query: 65 SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQ---- 120
+ + P I++ L+++ EG+ +L+C P+ ++ W N +L +
Sbjct: 344 DQASFQCSAPFIMDAPRDLNIS-EGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPR 400
Query: 121 -TIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161
++ TL + D G Y C+ N G + + V
Sbjct: 401 ISVLNDGTLNFSHVLLSDTGVYTCMVTNVAGN-SNASAYLNV 441
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 65.7 bits (159), Expect = 3e-13
Identities = 11/114 (9%), Positives = 23/114 (20%), Gaps = 26/114 (22%)
Query: 73 PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT-------- 124
+ ++ ++ EG + + C ++W +
Sbjct: 135 SNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQF 194
Query: 125 -----------------GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161
L I D G +C G G +
Sbjct: 195 GITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGE-LDADRSSTI 247
Score = 64.2 bits (155), Expect = 2e-12
Identities = 26/207 (12%), Positives = 47/207 (22%), Gaps = 39/207 (18%)
Query: 25 AKEGQSVQLECH---AEGHPIPTISWRRNFKRLGRLHLAIPYTSPEAQVDTPPVILNNSP 81
G +V+L C A P ISW + SP
Sbjct: 14 VHAGGTVELPCSYQLANDTQPPVISWLKG----------------------------ASP 45
Query: 82 QLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAY 141
S + + G + + TL++ + +D G Y
Sbjct: 46 DRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRY 105
Query: 142 YCVAQNGIGRGARRKIEVKVEF--------APIVTVQSTRIGQALHHDMDLDCHIEAYPH 193
+C R V + + + +D+ + C +
Sbjct: 106 WCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCAN 165
Query: 194 PILYWAKDGEIVVNDEYHSISNFGTSE 220
+ W N E +
Sbjct: 166 ANVTWYTGPTFFENYETGTYQPLANKN 192
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 65.0 bits (158), Expect = 5e-13
Identities = 22/107 (20%), Positives = 33/107 (30%), Gaps = 14/107 (13%)
Query: 73 PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF--------- 123
P N L V +L C AEG+P + W ++ +L T
Sbjct: 115 APYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLF 174
Query: 124 -TGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTV 169
STL RI +YC + E+ + P+
Sbjct: 175 NVTSTL---RINTTTNEIFYCTFRRLDP-EENHTAELVIPELPLAHP 217
Score = 60.0 bits (145), Expect = 3e-11
Identities = 29/159 (18%), Positives = 53/159 (33%), Gaps = 30/159 (18%)
Query: 85 VAKEGQSVQLECHAEGHPIP-----TISWRRENNAIL--PNGQTIFTG------------ 125
V + G ++ +EC + W E+ I+ +G+
Sbjct: 12 VVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLL 71
Query: 126 --------STLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQA 177
+ LQI + +D G Y C+ G ++I VKV Q +
Sbjct: 72 KDQLSLGNAALQITDVKLQDAGVYRCMISYGGAD--YKRITVKVNAPYNKINQRILVVDP 129
Query: 178 LHHDMDLDCHIEAYPHPILYWAK-DGEIVVNDEYHSISN 215
+ + +L C E YP + W D +++ + S
Sbjct: 130 VTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSK 168
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 61.2 bits (149), Expect = 1e-12
Identities = 17/98 (17%), Positives = 27/98 (27%), Gaps = 10/98 (10%)
Query: 72 TPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF----TGST 127
+ +G V+ P + W + I P+ + IF
Sbjct: 6 SGAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRI 64
Query: 128 LQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAP 165
L I D YY A + + E+ V P
Sbjct: 65 LFINNCQMTDDSEYYVTAGD-----EKCSTELFVRSGP 97
Score = 28.9 bits (65), Expect = 0.55
Identities = 7/44 (15%), Positives = 14/44 (31%), Gaps = 5/44 (11%)
Query: 184 LDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQ 227
+ A P + W K+G+ + + +G L
Sbjct: 28 FVVEL-ADPKLEVKWYKNGQEIRPSTKYIFE----HKGCQRILF 66
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 61.6 bits (149), Expect = 1e-12
Identities = 20/91 (21%), Positives = 30/91 (32%), Gaps = 15/91 (16%)
Query: 74 PVILNNSPQLSVAKEGQSVQLECHAEGHPIP--TISWRRENNAI------------LPNG 119
P I P+ A G V C A T +W +N A+ G
Sbjct: 11 PQITVQ-PETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGG 69
Query: 120 QTIFTGSTLQIPRITKEDRGAYYCVAQNGIG 150
+ + + L++ + G Y CV N G
Sbjct: 70 ELMEYTTILRLRNVEFTSEGXYQCVISNHFG 100
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 63.4 bits (153), Expect = 2e-12
Identities = 24/165 (14%), Positives = 42/165 (25%), Gaps = 34/165 (20%)
Query: 82 QLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAY 141
++ +E SV L C A I+W ++ I + + K+ RG Y
Sbjct: 11 KVYDYQEDGSVLLTCDA---EAKNITWFKDGKMIGFLTED---KKKWNLGSNAKDPRGMY 64
Query: 142 YCVAQNGIGR-----------GARRKIEVKVEFAPIVTVQSTRIGQALH----------- 179
C + +K K + A +
Sbjct: 65 QCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKV 124
Query: 180 ----HDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSE 220
+ L C YP + W + + + DE
Sbjct: 125 SISGTTVILTC--PQYPGSEILWQHNDKNIGGDEDDKNIGSDEDH 167
Score = 60.3 bits (145), Expect = 2e-11
Identities = 30/201 (14%), Positives = 53/201 (26%), Gaps = 61/201 (30%)
Query: 17 NNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRLG--------------------- 55
N+ ++ +E SV L C A I+W ++ K +G
Sbjct: 7 NHLVKVYDYQEDGSVLLTCDA---EAKNITWFKDGKMIGFLTEDKKKWNLGSNAKDPRGM 63
Query: 56 -----------------RLHLAIPYTSPEAQVDTPPVILNNS--------------PQLS 84
R+ A A+ D
Sbjct: 64 YQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYK 123
Query: 85 VAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT---GSTLQIPRITK-EDRGA 140
V+ G +V L C +P I W+ + I + L + ++ E G
Sbjct: 124 VSISGTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGY 181
Query: 141 YYCVAQNGIGRGARRKIEVKV 161
Y C + A + ++
Sbjct: 182 YVCYPRGSKPEDANFYLYLRA 202
Score = 36.4 bits (83), Expect = 0.004
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 4 SPESQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL 54
+ + T V+ G +V L C +P I W+ N K +
Sbjct: 104 KKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQ--YPGSEILWQHNDKNI 152
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 62.2 bits (151), Expect = 3e-12
Identities = 31/170 (18%), Positives = 53/170 (31%), Gaps = 29/170 (17%)
Query: 80 SPQLSVAKEGQSVQLECHA-EGHPIPTISWRRENN----AILPNGQTIFTGS-------- 126
S A G +V L ++W N PNG+ S
Sbjct: 5 SVPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDL 64
Query: 127 -----TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEF-APIVTVQSTRIGQALHH 180
L+I ++KEDRG YY + + +EV P++ + +
Sbjct: 65 DKTNGALRIYNVSKEDRGDYYMRMLHETEDQWKITMEVYEMVSKPMIYWECSNA------ 118
Query: 181 DMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQCKV 230
L C + L + E + + ++S T+ +CK
Sbjct: 119 --TLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNL--RAPFKCKA 164
Score = 52.2 bits (125), Expect = 9e-09
Identities = 19/183 (10%), Positives = 40/183 (21%), Gaps = 55/183 (30%)
Query: 8 QVDTPPVILNNSTQLSVAKEGQSVQLECHA-EGHPIPTISWRRNFKRL------------ 54
Q + P + A G +V L ++W +
Sbjct: 2 QDQSVPNV--------NAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTV 53
Query: 55 ------GRLH-------LAIPYTSPE------AQVDTPPV--------ILNNSPQLSVAK 87
R+ L I S E ++ + + +
Sbjct: 54 FESVFKDRVDLDKTNGALRIYNVSKEDRGDYYMRMLHETEDQWKITMEVYEMVSKPMIYW 113
Query: 88 EGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQN 147
E + L C + + + + + + R + C A N
Sbjct: 114 ECSNATLTCEVLEGTDVELKLYQ-------GKEHLRSLRQKTMSYQWTNLRAPFKCKAVN 166
Query: 148 GIG 150
+
Sbjct: 167 RVS 169
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 60.2 bits (146), Expect = 4e-12
Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 11/113 (9%)
Query: 64 TSPEAQVDTPPVILNNSPQLSV-AKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTI 122
+S + D I+ S ++ V A + V L C P + W ++ ++ + +
Sbjct: 2 SSGSSGTDVSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALL 60
Query: 123 FTG----STLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQS 171
L +P + ED G Y C + V V P+ + S
Sbjct: 61 LQKEDTVRRLVLPAVQLEDSGEYLCEIDD-----ESASFTVTVTEPPVRIIYS 108
Score = 28.2 bits (63), Expect = 1.1
Identities = 13/44 (29%), Positives = 16/44 (36%), Gaps = 5/44 (11%)
Query: 184 LDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQ 227
L C + P + W KDGE VV + E T L
Sbjct: 33 LTCEL-CRPWAEVRWTKDGEEVVESPALLLQ----KEDTVRRLV 71
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 60.1 bits (145), Expect = 8e-12
Identities = 28/154 (18%), Positives = 53/154 (34%), Gaps = 33/154 (21%)
Query: 12 PPVI-LNNSTQLS---VAKEGQSVQLECHAEGHPIPTISWRRNFKRLGRLHLAIPYTSPE 67
PP I L+ ++ V G ++L+ G P PT+ W++ + + +PE
Sbjct: 13 PPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPE 72
Query: 68 AQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGST 127
D+ + + + + V++E + S
Sbjct: 73 DTGDSDEWVFDKKL---LCETEGRVRVETTKD-------------------------RSI 104
Query: 128 LQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161
+ KED G Y +N +G + + VKV
Sbjct: 105 FTVEGAEKEDEGVYTVTVKNPVGE-DQVNLTVKV 137
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 58.2 bits (141), Expect = 2e-11
Identities = 18/113 (15%), Positives = 33/113 (29%), Gaps = 10/113 (8%)
Query: 64 TSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF 123
+ V V + + +EG S C + W + + N
Sbjct: 3 SGSSGLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEI 62
Query: 124 TGS-----TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQS 171
L + ++ +D G Y A + R ++V P V +S
Sbjct: 63 DAQPGGYHVLTLRQLALKDSGTIYFEAGD-----QRASAALRVTEKPSVFSRS 110
Score = 38.5 bits (90), Expect = 3e-04
Identities = 5/26 (19%), Positives = 8/26 (30%)
Query: 25 AKEGQSVQLECHAEGHPIPTISWRRN 50
+EG S C + W +
Sbjct: 25 VQEGSSATFRCRISPANYEPVHWFLD 50
Score = 33.9 bits (78), Expect = 0.010
Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 3/44 (6%)
Query: 184 LDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQ 227
C I + ++W D + +E + I G L
Sbjct: 33 FRCRISPANYEPVHWFLDKTPLHANELNEID---AQPGGYHVLT 73
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 60.3 bits (145), Expect = 2e-11
Identities = 27/162 (16%), Positives = 50/162 (30%), Gaps = 12/162 (7%)
Query: 70 VDTPPVILNNSPQLSVAKEGQSVQLECHAEG-HPIPTISWRRENNAILPNGQTIFTGSTL 128
+ P+ + + G S QL C ++ WR + + L Q+ S L
Sbjct: 3 LQVKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTS-LGAVQSDTGRSVL 61
Query: 129 QIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV-EFAPIVTVQSTRIGQALHHDMDLDCH 187
+ + G CV G GR + +++ V F +TV + + D ++ C
Sbjct: 62 TVRNASLSAAGTRVCVGSCG-GRTFQHTVQLLVYAFPNQLTVSPAAL---VPGDPEVACT 117
Query: 188 IEAYP-----HPILYWAKDGEIVVNDEYHSISNFGTSEGTTG 224
G+ + + E G
Sbjct: 118 AHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQG 159
Score = 39.5 bits (91), Expect = 3e-04
Identities = 20/165 (12%), Positives = 38/165 (23%), Gaps = 29/165 (17%)
Query: 9 VDTPPVILNNSTQLSVAKEGQSVQLECHAEG-HPIPTISWRRNFKRLGRL---------- 57
+ P+ + + G S QL C ++ WR LG +
Sbjct: 3 LQVKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGRSVLT 62
Query: 58 --------------HLAIPYTSPEAQVDTPPVILNNSPQLS-VAKEGQSVQLECHAEGHP 102
+ + + V N +S A ++ C A
Sbjct: 63 VRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQLTVSPAALVPGDPEVACTAHKVT 122
Query: 103 ---IPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCV 144
+S+ G + + D + V
Sbjct: 123 PVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRV 167
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 61.0 bits (148), Expect = 4e-11
Identities = 17/93 (18%), Positives = 31/93 (33%), Gaps = 4/93 (4%)
Query: 63 YTSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTI 122
P + EGQS C P ++W +++ + + + +
Sbjct: 471 IRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYM 530
Query: 123 FT----GSTLQIPRITKEDRGAYYCVAQNGIGR 151
L I R+ +D+G Y A+N G
Sbjct: 531 KRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGT 563
Score = 36.4 bits (84), Expect = 0.007
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 25 AKEGQSVQLECHAEGHPIPTISWRRNFKRL 54
EGQS C P ++W ++ + L
Sbjct: 494 VGEGQSANFYCRVIASSPPVVTWHKDDREL 523
Score = 34.0 bits (78), Expect = 0.031
Identities = 7/34 (20%), Positives = 12/34 (35%)
Query: 184 LDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFG 217
C + A P++ W KD + + G
Sbjct: 502 FYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNG 535
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 57.0 bits (138), Expect = 4e-11
Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 11/101 (10%)
Query: 66 PEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTG 125
PE P + P+ G E E + W+R + I + +
Sbjct: 1 PEP-GKKPVSAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLAT 58
Query: 126 ----STLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE 162
TL + + D+G+Y +A + ++ K ++KV
Sbjct: 59 EGTRHTLTVREVGPADQGSYAVIAGS-----SKVKFDLKVI 94
Score = 26.9 bits (60), Expect = 2.2
Identities = 7/44 (15%), Positives = 15/44 (34%), Gaps = 5/44 (11%)
Query: 184 LDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQ 227
+ E + W + G + + + +EGT +L
Sbjct: 28 FEAETER-AGVKVRWQRGGSDISASNKYGL----ATEGTRHTLT 66
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 57.6 bits (139), Expect = 5e-11
Identities = 24/105 (22%), Positives = 37/105 (35%), Gaps = 18/105 (17%)
Query: 73 PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT-------- 124
P + QL A E + +G P P++ W N ++L IFT
Sbjct: 3 MPASV----QLHTAVEMHHWCIPFSVDGQPAPSLRWLF-NGSVLNETSFIFTEFLEPAAN 57
Query: 125 ----GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAP 165
L++ + T + G Y +A N G+ A I P
Sbjct: 58 ETVRHGCLRLNQPTHVNNGNYTLLAANPFGQ-ASASIMAAFMDNP 101
Score = 29.1 bits (65), Expect = 0.51
Identities = 8/49 (16%), Positives = 16/49 (32%)
Query: 180 HDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQC 228
H + ++ P P L W +G ++ + + T C
Sbjct: 16 HHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGC 64
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 56.6 bits (137), Expect = 6e-11
Identities = 14/90 (15%), Positives = 25/90 (27%), Gaps = 6/90 (6%)
Query: 63 YTSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNG--- 119
+ +G ++L + W + I +G
Sbjct: 5 HHHSSMDEKKSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKY 63
Query: 120 --QTIFTGSTLQIPRITKEDRGAYYCVAQN 147
++I TL I + + D AY CV
Sbjct: 64 IFESIGAKRTLTISQCSLADDAAYQCVVGG 93
Score = 34.3 bits (79), Expect = 0.008
Identities = 4/43 (9%), Positives = 9/43 (20%), Gaps = 1/43 (2%)
Query: 8 QVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRN 50
+G ++L + W +N
Sbjct: 11 DEKKSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKN 52
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 60.4 bits (145), Expect = 7e-11
Identities = 28/254 (11%), Positives = 54/254 (21%), Gaps = 64/254 (25%)
Query: 25 AKEGQSVQLECHAEGHPIPTISWRRNFKRL---------------GRLHLAIPYTSPE-- 67
+ + C + KR G + I E
Sbjct: 243 PEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDA 302
Query: 68 ----------------------AQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPT 105
+ SP + G SV + C +
Sbjct: 303 GRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKS 362
Query: 106 ISWRRENNAILPNGQTIFTGS-----------------------TLQIPRITKEDRGAYY 142
I + + S T+ + ++T D G Y+
Sbjct: 363 IKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYW 422
Query: 143 CVAQNGIGRGARRKIEVKVEFAPIVTVQSTR--IGQALHHDMDLDCHIEAYPHPILYWAK 200
C+ +I++ + + +G+ L C +Y W
Sbjct: 423 CLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNN 482
Query: 201 DGEIVVNDEYHSIS 214
G + + S
Sbjct: 483 TGCQALPSQDEGPS 496
Score = 60.4 bits (145), Expect = 8e-11
Identities = 31/242 (12%), Positives = 58/242 (23%), Gaps = 72/242 (29%)
Query: 25 AKEGQSVQLECHAEGHPIPTIS-WRRNFKRLGRLHLAIPYTSPEAQVDTPP--------- 74
G SV + C +I W + + +
Sbjct: 343 GVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPG 402
Query: 75 -----VILNN-----------------------------------SPQLSVAKEGQSVQL 94
VILN P A G+++++
Sbjct: 403 NGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKV 462
Query: 95 ECH----AEGHPIPTISWRRENNAILPNGQTIFTGS-----------TLQIPRITKEDRG 139
CH + W LP+ + + +L + +T+ D G
Sbjct: 463 PCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEG 522
Query: 140 AYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRI-------GQALHHDMDLDCHIEAYP 192
Y+C + G G + V VE + + + + + +A
Sbjct: 523 WYWCGVKQGHFYGETAAVYVAVEERKAAGSRDVSLAKADAAPDEKVLDSGFREIENKAIQ 582
Query: 193 HP 194
P
Sbjct: 583 DP 584
Score = 58.1 bits (139), Expect = 4e-10
Identities = 17/146 (11%), Positives = 36/146 (24%), Gaps = 11/146 (7%)
Query: 86 AKEGQSVQLECHAEGHPIPTISWRRENNAILP-NGQTIFT------GSTLQIPRITKEDR 138
+ + C + G+ + ++ I + KED
Sbjct: 243 PEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDA 302
Query: 139 GAYYCVAQNGIGRG---ARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHP- 194
G Y C A + + ++ V + T + + + C
Sbjct: 303 GRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKS 362
Query: 195 ILYWAKDGEIVVNDEYHSISNFGTSE 220
I YW + + G +
Sbjct: 363 IKYWCLWEGAQNGRCPLLVDSEGWVK 388
Score = 53.1 bits (126), Expect = 2e-08
Identities = 32/282 (11%), Positives = 66/282 (23%), Gaps = 85/282 (30%)
Query: 25 AKEGQSVQLECHAE---GHPIPTISWRRNFKRL-----------------GRLHL----- 59
+ EG SV + C+ + W R R GR +L
Sbjct: 12 SVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPE 71
Query: 60 -----------------------AIPYTSPEAQVDTPPV---ILNNSPQLSVAKEGQSVQ 93
I V L N ++ G++V
Sbjct: 72 NGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVT 131
Query: 94 LECHAEGHPIPTISWRRENNAILPNGQTIFTGS---------------------TLQIPR 132
+ C + + + P +G ++ I +
Sbjct: 132 INCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQ 191
Query: 133 ITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPI----------VTVQSTRIGQALHHDM 182
+ D G Y C A + ++ +++V VT +G + +
Sbjct: 192 LRLSDAGQYLCQAGDD-SNSNKKNADLQVLKPEPELVYEDLRGSVTFH-CALGPEVANVA 249
Query: 183 DLDCHIEAYPHPILYWAKDG-EIVVNDEYHSISNFGTSEGTT 223
C + + + G + ++ +
Sbjct: 250 KFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFS 291
Score = 53.1 bits (126), Expect = 2e-08
Identities = 23/172 (13%), Positives = 46/172 (26%), Gaps = 25/172 (14%)
Query: 80 SPQLSVAKEGQSVQLECHAE---GHPIPTISWRRENNAILPNGQTIFTGS---------- 126
P+ + EG SV + C+ + W R+ G
Sbjct: 6 GPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRAN 65
Query: 127 ----------TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQ 176
+ I +++++D G Y C RG + ++V P + +
Sbjct: 66 LTNFPENGTFVVNIAQLSQDDSGRYKCGLGIN-SRGLSFDVSLEVSQGPGLLNDTKVYTV 124
Query: 177 ALHHDMDLDCHIEA-YPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQ 227
L + ++C + K + S + L
Sbjct: 125 DLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLD 176
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 56.9 bits (137), Expect = 7e-11
Identities = 21/120 (17%), Positives = 42/120 (35%), Gaps = 14/120 (11%)
Query: 74 PVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENN-AILPNGQTIFTGS------ 126
+ N++ ++V EGQ++ L+C ++ W + I N + S
Sbjct: 2 GSLTNHTETITVE-EGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLH 60
Query: 127 ------TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHH 180
++ +P +T +D G Y C+ + K+ V + HH
Sbjct: 61 HSANQLSITVPNVTLQDEGVYKCLHYSDSVSTKEVKVIVLATMKGEFCRYPSHWRPLEHH 120
Score = 32.7 bits (74), Expect = 0.032
Identities = 8/37 (21%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 13 PVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRR 49
+ N++ ++V EGQ++ L+C ++ W
Sbjct: 2 GSLTNHTETITVE-EGQTLTLKCVTSLRKNSSLQWLT 37
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 58.0 bits (140), Expect = 8e-11
Identities = 23/167 (13%), Positives = 49/167 (29%), Gaps = 31/167 (18%)
Query: 81 PQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAIL--PNGQTIFTGS------------ 126
Q +V P+ + W+++ + + N + S
Sbjct: 2 SQQIYGVVYGNVTFHV-PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSG 60
Query: 127 TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEF---APIVTVQSTRIGQALHHDMD 183
+L I +T D Y + N K + V P++ + + +
Sbjct: 61 SLTIYNLTSSDEDEYEMESPNITD---TMKFFLYVLEMVSKPMIYWECS--------NAT 109
Query: 184 LDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQCKV 230
L C + L + E + + ++S T+ +CK
Sbjct: 110 LTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNL--RAPFKCKA 154
Score = 49.9 bits (119), Expect = 5e-08
Identities = 16/163 (9%), Positives = 37/163 (22%), Gaps = 43/163 (26%)
Query: 24 VAKEGQSVQLECHAEGHPIPTISWRRNFKRL---------------GRLHL--------- 59
+V P+ + W++ ++ R++L
Sbjct: 6 YGVVYGNVTFHV-PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTI 64
Query: 60 -------AIPYT-SPEAQVDTPPVILN---NSPQLSVAKEGQSVQLECHAEGHPIPTISW 108
Y DT L + + E + L C +
Sbjct: 65 YNLTSSDEDEYEMESPNITDTMKFFLYVLEMVSKPMIYWECSNATLTCEVLEGTDVELKL 124
Query: 109 RRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGR 151
+ + + + + R + C A N + +
Sbjct: 125 YQ-------GKEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQ 160
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 56.9 bits (137), Expect = 8e-11
Identities = 16/104 (15%), Positives = 29/104 (27%), Gaps = 17/104 (16%)
Query: 81 PQLSVAKEGQSVQLECHAEGHPI---PTISWRRENNAILPNG-------------QTIFT 124
PQ K G+ + + + PTI W + L + +
Sbjct: 14 PQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVY 73
Query: 125 GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVT 168
+QI + G Y C +++V + T
Sbjct: 74 TFEMQIIKAKDNFAGNYRCEVTYKDKF-DSCSFDLEVHESTGTT 116
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 56.5 bits (136), Expect = 9e-11
Identities = 15/96 (15%), Positives = 23/96 (23%), Gaps = 16/96 (16%)
Query: 71 DTPPVILNNSPQLSVAKEGQSVQLECHAEGHPI---PTISWRRENNAILPNG-------- 119
D P + PQ G S+ G + P + W + L +
Sbjct: 1 DDPIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLH 60
Query: 120 -----QTIFTGSTLQIPRITKEDRGAYYCVAQNGIG 150
+ L I G+Y C
Sbjct: 61 DSYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDK 96
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 58.1 bits (140), Expect = 9e-11
Identities = 23/173 (13%), Positives = 46/173 (26%), Gaps = 23/173 (13%)
Query: 80 SPQLSVAKEGQSVQLEC-HAEGHPIPTISWRRENNAIL-------------------PNG 119
+P + G+SV L G + I+W ++
Sbjct: 4 TPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKR 63
Query: 120 QTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALH 179
+LQ+ + ED G+Y + + V +
Sbjct: 64 LNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNM 123
Query: 180 HD-MDLDCHIE-AYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQCKV 230
+ L C +E A + W G + + ++S + + C
Sbjct: 124 TCELHLTCSVEDADDNVSFRWEALGNTLSSQPNLTVS-WDPRISSEQDYTCIA 175
Score = 49.6 bits (118), Expect = 1e-07
Identities = 13/82 (15%), Positives = 23/82 (28%), Gaps = 11/82 (13%)
Query: 72 TPPVILNNSPQLSVAKEGQSVQLECHAE-GHPIPTISWRRENNAILPNGQTIFTGSTLQI 130
+ N+S + L C E + W G T+ + L +
Sbjct: 109 RNIQVTNHSQ--LFQNMTCELHLTCSVEDADDNVSFRWEA-------LGNTLSSQPNLTV 159
Query: 131 -PRITKEDRGAYYCVAQNGIGR 151
Y C+A+N +
Sbjct: 160 SWDPRISSEQDYTCIAENAVSN 181
Score = 29.2 bits (65), Expect = 0.98
Identities = 6/41 (14%), Positives = 10/41 (24%), Gaps = 3/41 (7%)
Query: 11 TPPVILNNSTQLSVAKEGQSVQLECHAE-GHPIPTISWRRN 50
+ N+S + L C E + W
Sbjct: 109 RNIQVTNHSQ--LFQNMTCELHLTCSVEDADDNVSFRWEAL 147
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 55.9 bits (135), Expect = 1e-10
Identities = 15/102 (14%), Positives = 31/102 (30%), Gaps = 12/102 (11%)
Query: 67 EAQVDTPPVILNNSPQLS--VAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT 124
+ V P A+ G S L C ++W ++ + + +
Sbjct: 2 SSGSSGKVVFAKEQPAHREVQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSSKVRVE 60
Query: 125 ----GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE 162
L + + + + G Y C A G + ++V
Sbjct: 61 AVGCTRRLVVQQAGQAEAGEYSCEA-----GGQQLSFRLQVA 97
Score = 28.9 bits (65), Expect = 0.53
Identities = 11/67 (16%), Positives = 20/67 (29%), Gaps = 9/67 (13%)
Query: 161 VEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSE 220
+ P G + L C + + W KDG+ + + + +
Sbjct: 12 AKEQPAHREVQAEAGASAT----LSCEVAQ-AQTEVTWYKDGKKLSSSSKVRVE----AV 62
Query: 221 GTTGSLQ 227
G T L
Sbjct: 63 GCTRRLV 69
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 55.4 bits (134), Expect = 2e-10
Identities = 16/77 (20%), Positives = 24/77 (31%), Gaps = 6/77 (7%)
Query: 73 PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNG--QTIFTGS--TL 128
+E + C HP T++WR+ + +G Q G L
Sbjct: 8 ANCFTEE-LTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQEGLTLRL 65
Query: 129 QIPRITKEDRGAYYCVA 145
I + K D Y C
Sbjct: 66 TISALEKADSDTYTCDI 82
Score = 29.2 bits (66), Expect = 0.36
Identities = 11/44 (25%), Positives = 14/44 (31%), Gaps = 5/44 (11%)
Query: 184 LDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQ 227
C E +P + W K + H S EG T L
Sbjct: 28 FTCKTE-HPAATVTWRKGLLELRASGKHQPS----QEGLTLRLT 66
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 57.5 bits (138), Expect = 3e-10
Identities = 28/189 (14%), Positives = 51/189 (26%), Gaps = 38/189 (20%)
Query: 67 EAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEG-HPIPTISWRRENNAILPNGQTIFTG 125
E ++ PP++ G+SV L+C G H + W + +
Sbjct: 1 EVRLSVPPLV--------EVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEM 52
Query: 126 S------------------------TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161
L + D Y CV + G A + V
Sbjct: 53 QGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNV 112
Query: 162 EFAP----IVTVQSTRIGQALHHDMDLDCHIE-AYPHPILYWAKDGEIVVNDEYHSISNF 216
P + + T C+ P P + W ++G+ + + +
Sbjct: 113 FAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGY 172
Query: 217 GTSEGTTGS 225
TS +
Sbjct: 173 MTSRTVREA 181
Score = 52.9 bits (126), Expect = 1e-08
Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 20/106 (18%)
Query: 72 TPPVILNNSPQLSVAKEGQSVQLECHAE-GHPIPTISWRRENNAI--------------- 115
+ N LSV ++ C++ G+P P I+W R +
Sbjct: 117 EATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSR 176
Query: 116 --LPNGQTIFTGSTLQIPRITKEDRGA-YYCVAQNGIGRGARRKIE 158
+ STL + R+ K+DR A ++C A + G +++
Sbjct: 177 TVREASGLLSLTSTLYL-RLRKDDRDASFHCAAHYSLPEGRHGRLD 221
Score = 47.9 bits (113), Expect = 5e-07
Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 5/104 (4%)
Query: 11 TPPVILNNSTQLSVAKEGQSVQLECHAE-GHPIPTISWRRNFKRL---GRLHLAIPYTSP 66
+ N LSV ++ C++ G+P P I+W RN +RL ++ TS
Sbjct: 117 EATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSR 176
Query: 67 EAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRR 110
+ + + L ++ L + K+ + C A + +P R
Sbjct: 177 TVREASGLLSLTSTLYLRLRKDDRDASFHCAAH-YSLPEGRHGR 219
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 57.5 bits (138), Expect = 4e-10
Identities = 35/244 (14%), Positives = 68/244 (27%), Gaps = 60/244 (24%)
Query: 12 PPVILNNSTQLSVAKEGQSVQLECHAEG-HPIP---TISWRRNFKRL----GRLHL---- 59
+ S + G L G P+P T +W ++ + L +
Sbjct: 2 AFTVSIQSNKRCFL-AGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTATLTVADAT 60
Query: 60 ---AIPYT------------SPEAQV--DTPPVILNNSPQLSVAKEGQSVQLEC---HAE 99
A Y E + + ++ PQ V+L +
Sbjct: 61 SENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSG 120
Query: 100 GHPIP-----TISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGAR 154
G SW + I T + I T + G Y +
Sbjct: 121 GKTPADNYELHYSWSK-------GEDVIDTTQDITIQEFTADKNGVYTVKVWGESED-SA 172
Query: 155 RKIEVKVEFAPI------VTVQSTRIGQ--ALHHDMDLDCHIEAYPHPIL------YWAK 200
K+ A + V ++ +G +L++ + D ++ P L Y +
Sbjct: 173 ASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQR 232
Query: 201 DGEI 204
+G++
Sbjct: 233 EGQL 236
Score = 56.8 bits (136), Expect = 7e-10
Identities = 26/172 (15%), Positives = 55/172 (31%), Gaps = 23/172 (13%)
Query: 73 PPVILNNSPQLSVAKEGQSVQLECHAEG-HPIP---TISWRRENNAILPNGQTIFTGSTL 128
+ + G L G P+P T +W +++ T +TL
Sbjct: 2 AFTV-SIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPH--ENNT----ATL 54
Query: 129 QIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALH--HDMDLDC 186
+ T E+ G+Y Q+ + +E A ++ + + D++L
Sbjct: 55 TVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHA 114
Query: 187 HIEAY---PHPILY-----WAKDGEIVVNDEYHSISNFGTSEGTTGSLQCKV 230
++ Y W+K +++ + +I + G KV
Sbjct: 115 TVKFSGGKTPADNYELHYSWSKGEDVIDTTQDITIQE--FTADKNGVYTVKV 164
Score = 45.6 bits (107), Expect = 4e-06
Identities = 26/193 (13%), Positives = 48/193 (24%), Gaps = 53/193 (27%)
Query: 11 TPPVILNNSTQLSVAKEGQSVQLEC---HAEGHPIP-----TISWRRNFKRLGRLH-LAI 61
++ Q V+L + G SW + + + I
Sbjct: 90 AELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQDITI 149
Query: 62 P---------YT------------SPEAQVDTPPVILNNSPQLSV-AKEGQSVQLEC--- 96
YT S ++ + ++ S G + L
Sbjct: 150 QEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVS 209
Query: 97 -----HAEGHPIPTISW---RRENNAILP-----------NGQTIFTGSTLQIPRITKED 137
+ G P TI + + + P G +I L T +D
Sbjct: 210 EDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDD 269
Query: 138 RGAYYCVAQNGIG 150
++CVA+
Sbjct: 270 TAKFWCVAKLYQQ 282
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 54.2 bits (131), Expect = 4e-10
Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 7/94 (7%)
Query: 73 PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT----GSTL 128
P I+ V G+ V+L C P + W ++ AI + + + L
Sbjct: 8 PAAIIKPLEDQWV-APGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAML 65
Query: 129 QIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE 162
I + +D G Y C + A +E K
Sbjct: 66 VIRGASLKDAGEYTCEVEASKST-ASLHVEEKAS 98
Score = 30.3 bits (69), Expect = 0.16
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 184 LDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQ 227
L C + P+ W KD + + + + + EGT L
Sbjct: 28 LRCELSRAGTPVH-WLKDRKAIRKSQKYDV----VCEGTMAMLV 66
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 54.3 bits (131), Expect = 4e-10
Identities = 13/80 (16%), Positives = 28/80 (35%), Gaps = 6/80 (7%)
Query: 73 PPVILNNSPQLSV-AKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTG----ST 127
P IL+ ++S+ + V L C +W ++ + + +
Sbjct: 8 PVHILSPQDKVSLTFTTSERVVLTCEL-SRVDFPATWYKDGQKVEESELLVVKMDGRKHR 66
Query: 128 LQIPRITKEDRGAYYCVAQN 147
L +P +D G + C +
Sbjct: 67 LILPEAKVQDSGEFECRTEG 86
Score = 28.5 bits (64), Expect = 0.65
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 5/44 (11%)
Query: 184 LDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQ 227
L C + + W KDG+ V E + +G L
Sbjct: 30 LTCEL-SRVDFPATWYKDGQKVEESELLVVK----MDGRKHRLI 68
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 53.8 bits (130), Expect = 6e-10
Identities = 10/66 (15%), Positives = 18/66 (27%), Gaps = 5/66 (7%)
Query: 86 AKEGQSVQLECHAEGHPIPTISWRRENNAILPNG--QTIFTG--STLQIPRITKEDRGAY 141
G++ E P W+ + + + + I G L + G
Sbjct: 17 VFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEV 75
Query: 142 YCVAQN 147
A N
Sbjct: 76 SFQAAN 81
Score = 29.2 bits (66), Expect = 0.38
Identities = 15/76 (19%), Positives = 24/76 (31%), Gaps = 13/76 (17%)
Query: 152 GARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYH 211
GA IEV+ V V +G+ H + + + P W G+ +
Sbjct: 1 GAMALIEVEKPLYG-VEVF---VGETAH----FEIEL-SEPDVHGQWKLKGQPLAASPDC 51
Query: 212 SISNFGTSEGTTGSLQ 227
I +G L
Sbjct: 52 EI----IEDGKKHILI 63
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 53.9 bits (130), Expect = 6e-10
Identities = 21/106 (19%), Positives = 32/106 (30%), Gaps = 11/106 (10%)
Query: 64 TSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF 123
TS V P+ + A EG + L C + W + + + +
Sbjct: 9 TSAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLRDGDRHSL 66
Query: 124 TGS----TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAP 165
LQI + ED G Y C+ R + V P
Sbjct: 67 RQDGARCELQIRGLVAEDAGEYLCMCGK-----ERTSAMLTVRAMP 107
Score = 26.9 bits (60), Expect = 3.0
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 6/44 (13%)
Query: 184 LDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQ 227
L C + W K E + + + HS+ +G LQ
Sbjct: 39 LRCELSKMAPVE--WWKGHETLRDGDRHSL----RQDGARCELQ 76
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 53.5 bits (129), Expect = 7e-10
Identities = 15/77 (19%), Positives = 24/77 (31%), Gaps = 6/77 (7%)
Query: 73 PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF----TGSTL 128
P + + EG + L C P + W NN + P + L
Sbjct: 8 PVRFQE-ALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLEL 65
Query: 129 QIPRITKEDRGAYYCVA 145
+ + +D G Y C
Sbjct: 66 VVRNLRPQDSGRYSCSF 82
Score = 31.1 bits (71), Expect = 0.094
Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 5/44 (11%)
Query: 184 LDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQ 227
L C + + P+ W ++ + +S+ EG L
Sbjct: 28 LRCVLSSVAAPVK-WCYGNNVLRPGDKYSLR----QEGAMLELV 66
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 53.9 bits (130), Expect = 8e-10
Identities = 18/103 (17%), Positives = 33/103 (32%), Gaps = 12/103 (11%)
Query: 73 PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGS----TL 128
P + + A EG + L+C + + W++ + G+ L
Sbjct: 8 PARFTQD-LKTKEASEGATATLQCELS--KVAPVEWKKGPETLRDGGRYSLKQDGTRCEL 64
Query: 129 QIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQS 171
QI ++ D G Y C+ R + V P +
Sbjct: 65 QIHDLSVADAGEYSCMCGQ-----ERTSATLTVRALPARFTEG 102
Score = 27.7 bits (62), Expect = 1.5
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 6/44 (13%)
Query: 184 LDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQ 227
L C E + W K E + + +S+ +GT LQ
Sbjct: 28 LQC--ELSKVAPVEWKKGPETLRDGGRYSLK----QDGTRCELQ 65
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 53.5 bits (129), Expect = 8e-10
Identities = 12/85 (14%), Positives = 22/85 (25%), Gaps = 8/85 (9%)
Query: 86 AKEGQSVQLECH-AEGHPIPTISWRRENNAILPNGQTIFTG----STLQIPRITKEDRGA 140
EG+S EC + W + + + T L + D G
Sbjct: 20 VLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGE 79
Query: 141 YYCVAQNGIGRGARRKIEVKVEFAP 165
+ + + V+ P
Sbjct: 80 VVFSVRGLTSKA---SLIVRERSGP 101
Score = 34.7 bits (80), Expect = 0.004
Identities = 11/56 (19%), Positives = 17/56 (30%), Gaps = 13/56 (23%)
Query: 25 AKEGQSVQLECH-AEGHPIPTISWRRNFKRL-----------GRLH-LAIPYTSPE 67
EG+S EC + W K + GR + L + +P
Sbjct: 20 VLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPS 75
Score = 29.7 bits (67), Expect = 0.24
Identities = 7/45 (15%), Positives = 12/45 (26%), Gaps = 5/45 (11%)
Query: 184 LDCHI-EAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQ 227
+C + W G+ V + T +G L
Sbjct: 28 FECVLSHESASDPAMWTVGGKTVGSSSRFQA----TRQGRKYILV 68
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 55.4 bits (133), Expect = 1e-09
Identities = 25/144 (17%), Positives = 44/144 (30%), Gaps = 23/144 (15%)
Query: 85 VAKEGQSVQLECH----AEGHPIPTISWRRENNAILP--NGQTIFTGS------------ 126
+ + L C E I W++E +L +G
Sbjct: 5 TKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNN 64
Query: 127 -TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE---FAPIVTVQSTRIGQALHHDM 182
++ I + D G Y CV +R+ +V A T + +
Sbjct: 65 LSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIR 124
Query: 183 DLDCHIE-AYPHPILYWAKDGEIV 205
+ C +P P L W ++GE +
Sbjct: 125 RIICSTSGGFPEPHLSWLENGEEL 148
Score = 43.8 bits (103), Expect = 1e-05
Identities = 12/90 (13%), Positives = 22/90 (24%), Gaps = 13/90 (14%)
Query: 69 QVDTPPVILNNSPQLSVAKEGQSVQLECHAEG-HPIPTISWRRENNAILPNGQTIFTG-- 125
+ S ++ C G P P +SW + T+
Sbjct: 101 TLSVKADFPTPSISDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPE 160
Query: 126 -------STLQIPRITKEDRGAYYCVAQNG 148
S L ++ C+ + G
Sbjct: 161 TELYAVSSKL---DFNMTTNHSFMCLIKYG 187
Score = 33.0 bits (75), Expect = 0.046
Identities = 7/31 (22%), Positives = 10/31 (32%), Gaps = 1/31 (3%)
Query: 21 QLSVAKEGQSVQLECHAEG-HPIPTISWRRN 50
++ C G P P +SW N
Sbjct: 114 SDFEIPTSNIRRIICSTSGGFPEPHLSWLEN 144
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 56.0 bits (134), Expect = 1e-09
Identities = 29/184 (15%), Positives = 55/184 (29%), Gaps = 35/184 (19%)
Query: 73 PPVILNNSPQLSVAKEGQSVQLECH---AEGHPIPTISWRRENNAILPNGQTIFTGS--- 126
P + +SPQL V G+SV + C E + + W + + +F S
Sbjct: 5 LPGLTVSSPQLRVH-VGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLS 63
Query: 127 ---------------------TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAP 165
+L + + K D G Y C + K V++
Sbjct: 64 VPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMV-MKKPVELW--- 119
Query: 166 IVTVQSTRIGQALHHDMDLDCHIEAYPHP---ILYWAKDGEIVVNDEYHSISNFGTSEGT 222
++ + + + + C I++ + W +E + G
Sbjct: 120 VLPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGK 179
Query: 223 TGSL 226
SL
Sbjct: 180 FQSL 183
Score = 52.6 bits (125), Expect = 2e-08
Identities = 24/170 (14%), Positives = 45/170 (26%), Gaps = 40/170 (23%)
Query: 2 YTSPESQVDTPPVILN---NSTQLSVAKEGQSVQLECHAEGHP---IPTISWRRNFKRLG 55
ES V PV L + + G + Q+ C + + ++W +
Sbjct: 104 RLKNESMVMKKPVELWVLPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHT 163
Query: 56 RLHLAIPYTSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAI 115
+ Y S S R N +
Sbjct: 164 EEETVLSYDS---------------------------------NMRSGKFQSLGRFRNRV 190
Query: 116 LPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAP 165
G ++++ + + D+G Y C G +R+ I + V
Sbjct: 191 DLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLE-SRKTIVLHVVQDE 239
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 52.4 bits (126), Expect = 2e-09
Identities = 12/87 (13%), Positives = 23/87 (26%), Gaps = 8/87 (9%)
Query: 86 AKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTG----STLQIPRITKEDRGAY 141
K + +C T W + + P+ + + L I + ED G Y
Sbjct: 20 VKAAEQAVFKCEV-SDEKVTGKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDY 78
Query: 142 YCVAQNGIGRGARRKIEVKVEFAPIVT 168
V ++ +
Sbjct: 79 TFVPDGYAL---SLSAKLNFLEIKVSG 102
Score = 25.8 bits (57), Expect = 5.8
Identities = 9/44 (20%), Positives = 13/44 (29%), Gaps = 5/44 (11%)
Query: 184 LDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQ 227
C + W K+G V + +IS G L
Sbjct: 28 FKCEVSD-EKVTGKWYKNGVEVRPSKRITIS----HVGRFHKLV 66
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 52.3 bits (126), Expect = 2e-09
Identities = 12/84 (14%), Positives = 23/84 (27%), Gaps = 10/84 (11%)
Query: 73 PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF--------T 124
P +I+ + G V++ + W + +
Sbjct: 8 PVLIVT-PLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFKKDGK 65
Query: 125 GSTLQIPRITKEDRGAYYCVAQNG 148
L + +EDRG Y + G
Sbjct: 66 RHILIFSDVVQEDRGRYQVITNGG 89
Score = 25.8 bits (57), Expect = 5.5
Identities = 5/44 (11%), Positives = 14/44 (31%), Gaps = 1/44 (2%)
Query: 184 LDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQ 227
+ + + + W K+G + ++ +G L
Sbjct: 28 MAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFKKDGKRHILI 70
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 51.6 bits (124), Expect = 3e-09
Identities = 16/99 (16%), Positives = 27/99 (27%), Gaps = 10/99 (10%)
Query: 71 DTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNG--QTIFTG--S 126
+ IL G+ + L+C + W + + + + + G
Sbjct: 5 SSGLKILT-PLTDQTVNLGKEICLKCEISENI--PGKWTKNGLPVQESDRLKVVQKGRIH 61
Query: 127 TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAP 165
L I ED G Y +V V P
Sbjct: 62 KLVIANALTEDEGDYVFAPDAY---NVTLPAKVHVISGP 97
Score = 27.7 bits (62), Expect = 1.2
Identities = 9/44 (20%), Positives = 13/44 (29%), Gaps = 6/44 (13%)
Query: 184 LDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQ 227
L C I W K+G V + + +G L
Sbjct: 27 LKCEISENIPGK--WTKNGLPVQESDRLKVV----QKGRIHKLV 64
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 55.2 bits (132), Expect = 5e-09
Identities = 26/174 (14%), Positives = 44/174 (25%), Gaps = 34/174 (19%)
Query: 27 EGQSVQLECHAEGHPIPTISWRRN---FKRLGRLHLAIP--------------------- 62
+ + P+ W + + R LAI
Sbjct: 90 PPGLLNVYVKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGY 149
Query: 63 YTSPEAQVDTPP---VILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNG 119
E +V P Q GQ +C A G + + +
Sbjct: 150 LAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAP 209
Query: 120 QTIF-------TGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPI 166
++ + TK D G Y C+ + G G E+ V+ P+
Sbjct: 210 LKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPV 263
Score = 27.4 bits (60), Expect = 4.2
Identities = 11/84 (13%), Positives = 21/84 (25%), Gaps = 3/84 (3%)
Query: 2 YTSPESQVDTPP---VILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRLGRLH 58
E +V P Q GQ +C A G + +
Sbjct: 150 LAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAP 209
Query: 59 LAIPYTSPEAQVDTPPVILNNSPQ 82
L + + ++N + +
Sbjct: 210 LKEIKVTSSRRFIASFNVVNTTKR 233
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 51.8 bits (124), Expect = 5e-09
Identities = 13/107 (12%), Positives = 32/107 (29%), Gaps = 14/107 (13%)
Query: 68 AQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGS- 126
++V + ++V EG + L C + + ++ W L
Sbjct: 1 SKVKGSQGQFPLTQNVTVV-EGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDN 59
Query: 127 ------------TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161
++ + ++ D G Y C + ++ + V
Sbjct: 60 RIELVRASWHELSISVSDVSLSDEGQYTCSLFTMPVKTSKAYLTVLG 106
Score = 31.4 bits (71), Expect = 0.078
Identities = 8/44 (18%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 7 SQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRN 50
S+V + ++V EG + L C + + ++ W
Sbjct: 1 SKVKGSQGQFPLTQNVTVV-EGGTAILTCRVDQNDNTSLQWSNP 43
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 51.2 bits (123), Expect = 5e-09
Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 7/86 (8%)
Query: 69 QVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF----- 123
+ +++ + + A G+ V+LEC + W + I+P ++ +
Sbjct: 2 SSGSSGIMVTKQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVE 60
Query: 124 -TGSTLQIPRITKEDRGAYYCVAQNG 148
L I TK D Y + G
Sbjct: 61 GKKHILIIEGATKADAAEYSVMTTGG 86
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 52.1 bits (124), Expect = 7e-09
Identities = 17/110 (15%), Positives = 30/110 (27%), Gaps = 13/110 (11%)
Query: 65 SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT 124
A ++ G +V L+C + H ++ W L G+
Sbjct: 29 KAMADINLSQDDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRAL 88
Query: 125 GS-------------TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161
++ I + D G Y C R A+ + V
Sbjct: 89 RDNRIQLVTSTPHELSISISNVALADEGEYTCSIFTMPVRTAKSLVTVLG 138
Score = 27.8 bits (61), Expect = 1.9
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 17 NNSTQLSVAKEGQSVQLECHAEGHPIPTISWRR 49
T G +V L+C + H ++ W
Sbjct: 42 QPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSN 74
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 52.6 bits (125), Expect = 2e-08
Identities = 17/88 (19%), Positives = 27/88 (30%), Gaps = 6/88 (6%)
Query: 80 SPQLSVAKEGQSVQLECHA-EGHPIPTISWRRENNAILP-NGQTIFTGSTLQIPRITKED 137
+ + + G SV L C E T+ W A + G L + + D
Sbjct: 12 ARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHD 71
Query: 138 RGAYYCVAQNGIGRGARRKIEVKVEFAP 165
G Y C + + V+ P
Sbjct: 72 SGNYSCYRAGRPAGT----VHLLVDVPP 95
Score = 35.2 bits (80), Expect = 0.014
Identities = 17/96 (17%), Positives = 23/96 (23%), Gaps = 15/96 (15%)
Query: 12 PPVILNNSTQLSVAKEGQSVQLECHA-EGHPIPTISWRRNFKRLGRLHLAIPYTSPEAQV 70
P L+ G SV L C E T+ W G
Sbjct: 6 CPAQEVARGVLTS-LPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPS----------- 53
Query: 71 DTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTI 106
+ L + S C+ G P T+
Sbjct: 54 --RWAGMGRRLLLRSVQLHDSGNYSCYRAGRPAGTV 87
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 52.0 bits (124), Expect = 2e-08
Identities = 24/166 (14%), Positives = 45/166 (27%), Gaps = 28/166 (16%)
Query: 81 PQLSVAKEGQSVQLECHAEGHPIPT-----ISWRRENNA--------------------- 114
P G SV L C+ + + ++W R +
Sbjct: 6 PTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLE 65
Query: 115 -ILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTR 173
+ ++L++ + ED G+Y C+ I ++V P T + +
Sbjct: 66 FVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQK 125
Query: 174 IGQALHHDMDLDCHI-EAYPHPILYWAKDGEIVVNDEYHSISNFGT 218
+ C P + W D + GT
Sbjct: 126 VQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQVPGFLSGT 171
Score = 46.2 bits (109), Expect = 2e-06
Identities = 13/97 (13%), Positives = 27/97 (27%), Gaps = 9/97 (9%)
Query: 80 SPQLSVAKEGQSVQLECHAEG-HPIPTISWRRENNAILPNGQTI------FTGSTLQIPR 132
Q C + G P I+W + + Q T ++L I
Sbjct: 122 EVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQVPGFLSGTVTVTSLWILV 181
Query: 133 ITKEDRGAYY-CVAQN-GIGRGARRKIEVKVEFAPIV 167
+ + G C ++ + + + V +
Sbjct: 182 PSSQVDGKQVTCKVEHESFEKPQLLTVSLTVYYPHHH 218
Score = 30.4 bits (68), Expect = 0.40
Identities = 7/48 (14%), Positives = 15/48 (31%), Gaps = 2/48 (4%)
Query: 8 QVDTPPVILNNSTQLSVAKEGQSVQLECHAEG-HPIPTISWRRNFKRL 54
+V P ++ + C + G P I+W + +
Sbjct: 112 RVLAKPQNTAEVQKVQL-TGEPVPMARCVSTGGRPPAQITWHSDLGGM 158
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 52.2 bits (124), Expect = 3e-08
Identities = 30/209 (14%), Positives = 51/209 (24%), Gaps = 48/209 (22%)
Query: 9 VDTPPVILNNSTQLSVAKEGQSVQLECHAEG-HPIP--TISWRRNFKRL----------- 54
V P + + S G+++ L C EG P T+ R K L
Sbjct: 82 VYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAE 141
Query: 55 -------GRLHLAIPYT--------------------SPEAQVDTPPVILNNSPQLSVAK 87
R H ++ + Q P V +
Sbjct: 142 VTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLE 201
Query: 88 EGQSVQLECHAEG-HPIPTISWRRENNAILPNGQTIFTGSTLQIP---RITKEDRGAYYC 143
+ C +G P+ N + + +T ED G
Sbjct: 202 VDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRL 261
Query: 144 VAQNGIGRG---ARRKIEVKVEFAPIVTV 169
+G + + + AP V +
Sbjct: 262 TCAVILGNQSQETLQTVTIYSFPAPNVIL 290
Score = 49.5 bits (117), Expect = 3e-07
Identities = 27/222 (12%), Positives = 58/222 (26%), Gaps = 43/222 (19%)
Query: 24 VAKEGQSVQLECHAEGHPIPTISWRRNFKR-------LGRLHLAIPYTSPEAQ------- 69
+ G SV + C + + R + ++Q
Sbjct: 10 ILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQPMCYSNC 69
Query: 70 ------------VDTPPVILNNSPQLSVAKEGQSVQLECHAEG-HPIP--TISWRRENNA 114
V P + +P S G+++ L C EG P T+ R
Sbjct: 70 PDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKE 129
Query: 115 ILPNGQTIFTGSTLQIPRITKEDRGAYY-CVAQNGIG-------RGARRKIEVKVEFAPI 166
+ + ++ GA + C + + +++ P
Sbjct: 130 LKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPA 189
Query: 167 VTVQ--STRIGQALHHDMDLDCHIEAYPHP---ILYWAKDGE 203
Q S R+ + + C ++ ++ A +
Sbjct: 190 TPPQLVSPRVLEV-DTQGTVVCSLDGLFPVSEAQVHLALGDQ 230
Score = 47.2 bits (111), Expect = 1e-06
Identities = 19/144 (13%), Positives = 47/144 (32%), Gaps = 10/144 (6%)
Query: 80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITK-EDR 138
SP + G SV + C + LP + + G+ ++ ++ ++
Sbjct: 5 SPSKVILPRGGSVLVTCSTSCDQPKLLGIETP----LPKKELLLPGNNRKVYELSNVQED 60
Query: 139 GAYYCVAQNGIGRGARRKIEVKVEFAP-IVTVQSTRIGQALHHDMDLDCHIEA---YPHP 194
C + G+ + + V + P V + Q + ++ L C +E +
Sbjct: 61 SQPMCYSNCPDGQSTAK-TFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANL 119
Query: 195 ILYWAKDGEIVVNDEYHSISNFGT 218
+ + + + + T
Sbjct: 120 TVVLLRGEKELKREPAVGEPAEVT 143
Score = 31.0 bits (69), Expect = 0.27
Identities = 13/92 (14%), Positives = 25/92 (27%), Gaps = 8/92 (8%)
Query: 8 QVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRLGRLHLAIPYTSPE 67
Q P V + + C +G + + RL+ + Y +
Sbjct: 183 QTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDS 242
Query: 68 AQVDTPPVILNNSPQLSVAKEGQSVQLECHAE 99
S ++ EG + +L C
Sbjct: 243 -------FSAKASVSVTAEDEG-TQRLTCAVI 266
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 49.3 bits (117), Expect = 2e-07
Identities = 24/162 (14%), Positives = 46/162 (28%), Gaps = 32/162 (19%)
Query: 80 SPQLSVAKEGQSVQLECHAEGHPIP-----TISWRR-----------------ENNAILP 117
+V + C+ I+W A P
Sbjct: 10 GGTQITPL-NDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRP 68
Query: 118 NGQTIFTGS-----TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQST 172
+L++P I E+ G Y C + + ++++V +P +
Sbjct: 69 GAIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKA-QGTVQLEVVASPASRLLLD 127
Query: 173 RIGQALHHDMDLDCHIEA-YPHPI-LYWAKDGEIVVNDEYHS 212
++G + D C YP I + W K + + S
Sbjct: 128 QVGMKENEDK-YMCESSGFYPEAINITWEKQTQKFPHPIEIS 168
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 48.5 bits (115), Expect = 2e-07
Identities = 18/139 (12%), Positives = 38/139 (27%), Gaps = 8/139 (5%)
Query: 80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRG 139
P+++ + G S+ L C Q+ I E
Sbjct: 8 QPRVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRGL--RWLARQLVDIR-EPET 64
Query: 140 AYYCVAQNGIGRGARRKIEVKVEFAP-IVTVQSTRIGQALHHDMDLDCHIE-AYPHPIL- 196
C + R + + ++ P V + Q + + L C + A P L
Sbjct: 65 QPVCFFRCA-RRTLQARGLIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLT 123
Query: 197 -YWAKDGEIVVNDEYHSIS 214
+ + ++ +
Sbjct: 124 LTLLRGAQELIRRSFAGEP 142
Score = 40.8 bits (95), Expect = 1e-04
Identities = 19/167 (11%), Positives = 42/167 (25%), Gaps = 35/167 (20%)
Query: 19 STQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKR------LGRLHLAIP---------- 62
+++ + G S+ L C + +R L L +
Sbjct: 8 QPRVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRGLRWLARQLVDIREPETQPV 67
Query: 63 --YTSPEAQVDTPPVILNNSPQLSV--------AKEGQSVQLECHAEG-HPIP--TISWR 109
+ + +I V G++ L C G P T++
Sbjct: 68 CFFRCARRTLQARGLIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLTLL 127
Query: 110 RENNAILPNGQTIFTG------STLQIPRITKEDRGAYYCVAQNGIG 150
R ++ T + ++ + C A+ +
Sbjct: 128 RGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAELDLR 174
Score = 29.3 bits (65), Expect = 0.74
Identities = 18/101 (17%), Positives = 27/101 (26%), Gaps = 15/101 (14%)
Query: 9 VDTPPVILNNSTQLSVAKEGQSVQLECHAEG-HPIP--TISWRRNFKRLGRLHLAIPYTS 65
P + G++ L C G P T++ R + L R
Sbjct: 85 TFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELIR--------- 135
Query: 66 PEAQVDTPPVILNNSPQLSV--AKEGQSVQLECHAEGHPIP 104
+ PP +V +E C AE P
Sbjct: 136 -RSFAGEPPRARGAVLTATVLARREDHGANFSCRAELDLRP 175
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.7 bits (118), Expect = 3e-07
Identities = 38/219 (17%), Positives = 70/219 (31%), Gaps = 82/219 (37%)
Query: 46 SWRRNFKR-------LG-RLHLAIPYTSPEAQV--------DTPPVILNNSPQLSVAKEG 89
S+ + ++ +G R + A P TS + + P SP LS++
Sbjct: 291 SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP-----SPMLSISNLT 345
Query: 90 QSVQLECHAEGHPIPTISWRRENNAILP----------NGQTIF--TG--STLQIPRITK 135
Q Q++ + + N+ LP NG +G +L +T
Sbjct: 346 QE-QVQDYVN-----------KTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTL 393
Query: 136 EDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYP-H- 193
A + Q+ I + RK++ F P+ P H
Sbjct: 394 RKAKAPSGLDQSRI-PFSERKLKFSNRFLPV-AS----------------------PFHS 429
Query: 194 PILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQCKVPV 232
+L A D ++ D + +F + ++PV
Sbjct: 430 HLLVPASD--LINKDLVKNNVSFNAKD-------IQIPV 459
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 45.3 bits (107), Expect = 1e-06
Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 24/116 (20%)
Query: 68 AQVDTPPVILNNSPQLSVAKEGQSVQLECHAEG--HPIPTISWRRENNAILP----NGQT 121
++T I A++G S+ L+CH + ++W +++ + G
Sbjct: 5 GTIETTGNI--------SAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWH 56
Query: 122 I----------FTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIV 167
I G L + +T D G Y+C+ +I ++V + +
Sbjct: 57 ISPSFKDRVAPGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSVA 112
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 47.4 bits (111), Expect = 1e-06
Identities = 20/130 (15%), Positives = 39/130 (30%), Gaps = 9/130 (6%)
Query: 74 PVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRI 133
+ G+ V L C + I+W + ++ + + +G TL I
Sbjct: 6 KDVYVVELDWYPDAPGEMVVLTC--DTPEEDGITWTLDQSS-----EVLGSGKTLTIQVK 58
Query: 134 TKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPH 193
D G Y C + + + K + I + + + + L C + Y
Sbjct: 59 EFGDAGQYTCHKGGEVLSHSLLLLHKKED--GIWSTDILKDQKEPKNKTFLRCEAKNYSG 116
Query: 194 PILYWAKDGE 203
W
Sbjct: 117 RFTCWWLTTI 126
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 46.2 bits (109), Expect = 2e-06
Identities = 30/185 (16%), Positives = 58/185 (31%), Gaps = 42/185 (22%)
Query: 85 VAKEGQSVQLECH---AEGHPIPTISWRRENNA----ILPNGQTIFTG------------ 125
+A G+ L CH + W + + +G+ +
Sbjct: 15 LAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSIL 74
Query: 126 --------STLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQA 177
+ L+I +T D G Y C Q+G K V+++ A + + +
Sbjct: 75 RDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYE---KALVELKVAALGSDLHVDVKGY 131
Query: 178 LHHDMDLDCHIE-AYPHPILYWAKDG--------EIVVNDE---YHSISNFGTSEGTTGS 225
+ L+C YP P + W+ + VV D Y ++ +
Sbjct: 132 KDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEG 191
Query: 226 LQCKV 230
+ C +
Sbjct: 192 VSCTI 196
Score = 45.5 bits (107), Expect = 4e-06
Identities = 17/113 (15%), Positives = 35/113 (30%), Gaps = 15/113 (13%)
Query: 65 SPEAQVDTPPVILNNSPQLSV-AKEGQSVQLECHAEG-HPIPTISWRRENNAILPNGQTI 122
+A V+ L + + V + + LEC + G +P P I W +P +
Sbjct: 108 YEKALVELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAP 167
Query: 123 FTG---------STLQIPRITKEDRGAYYCVAQNGI-GRGARRKIEVKVEFAP 165
+++ + C ++ + G I + F
Sbjct: 168 VVADGVGLYAVAASV---IMRGSSGEGVSCTIRSSLLGLEKTASISIADPFFR 217
Score = 30.4 bits (68), Expect = 0.34
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 27 EGQSVQLECHAEG-HPIPTISWRRN 50
+ + LEC + G +P P I W N
Sbjct: 132 KDGGIHLECRSTGWYPQPQIQWSNN 156
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 44.4 bits (104), Expect = 2e-06
Identities = 17/103 (16%), Positives = 30/103 (29%), Gaps = 16/103 (15%)
Query: 64 TSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPI---PTISWRRENNAILP--- 117
+S + + P + P + G+ + G + PTI W + L
Sbjct: 2 SSGSSGAEEPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKS 61
Query: 118 ----------NGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIG 150
N + L I ++ DRG Y +
Sbjct: 62 GARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDT 104
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 44.9 bits (106), Expect = 6e-06
Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 3/73 (4%)
Query: 73 PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPR 132
P + + V G+++ L C + P S +E LP Q+ + +
Sbjct: 107 PFLSADRGL---VLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANFSLGP 163
Query: 133 ITKEDRGAYYCVA 145
+ G Y C
Sbjct: 164 VDLNVSGIYRCYG 176
Score = 44.5 bits (105), Expect = 7e-06
Identities = 21/127 (16%), Positives = 37/127 (29%), Gaps = 7/127 (5%)
Query: 84 SVAKEGQSVQLECHAE-GHPIPTISWRRENNAILPNGQTIFTGST---LQIPRITKEDRG 139
V SV+++C A + + + + + F T I + G
Sbjct: 18 PVIPLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAG 77
Query: 140 AYYCVAQNGIGRGARRK---IEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPIL 196
Y C + G R + V + + ++ L C P
Sbjct: 78 RYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENISLTCSSAHIPFDRF 137
Query: 197 YWAKDGE 203
AK+GE
Sbjct: 138 SLAKEGE 144
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 44.5 bits (104), Expect = 6e-06
Identities = 31/180 (17%), Positives = 51/180 (28%), Gaps = 57/180 (31%)
Query: 20 TQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRLG---RLHLAIP----------YT-- 64
+ V+ G SV+L C + + W +N + L HL + Y
Sbjct: 6 IEYKVSISGTSVELTCPLD--SDENLKWEKNGQELPQKHDKHLVLQDFSEVEDSGYYVCY 63
Query: 65 ---------------------------------SPEAQVDTPPVILNNSP-QLSVAKEGQ 90
+A+ D + Q+ ++
Sbjct: 64 TPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDG 123
Query: 91 SVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIG 150
SV L C TI W ++ + I P T +T + K+ RG Y C
Sbjct: 124 SVLLTCGL---TDKTIKWLKDGSIISPLNAT---KNTWNLGNNAKDPRGTYQCQGAKETS 177
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 44.9 bits (106), Expect = 9e-06
Identities = 22/159 (13%), Positives = 37/159 (23%), Gaps = 14/159 (8%)
Query: 73 PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILP---NGQTIFTGS--T 127
L P + K G+ V L+C ++ +E + P GQ S
Sbjct: 118 RKPSLLAHPG-PLVKSGERVILQCWSDIMFE-HFFLHKEGISKDPSRLVGQIHDGVSKAN 175
Query: 128 LQIPRITKEDRGAYYCVAQNGIGRGARRK------IEVKVEFAPIVTVQSTRIGQALHHD 181
I + G Y C I V +
Sbjct: 176 FSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQAGES 235
Query: 182 MDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSE 220
+ L C + +++G T +
Sbjct: 236 VTLSCSSRSSYDMYH-LSREGGAHERRLPAVRKVNRTFQ 273
Score = 43.7 bits (103), Expect = 2e-05
Identities = 21/147 (14%), Positives = 37/147 (25%), Gaps = 12/147 (8%)
Query: 84 SVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYC 143
+V G V L CH H +E+ +P + + +T G Y C
Sbjct: 33 AVVPRGGHVTLRCHYR-HRFNNFMLYKEDRIHIPIFHGRIFQESFNMSPVTTAHAGNYTC 91
Query: 144 VAQNGIGRGAR------RKIEVKVEFAP--IVTVQSTRIGQALHHDMDLDCHIEAYPHPI 195
+ I V ++ + + L C +
Sbjct: 92 RGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLV--KSGERVILQCWSDIMFEHF 149
Query: 196 LYWAKDGEIVVNDEYHSISNFGTSEGT 222
K+G + G S+
Sbjct: 150 F-LHKEGISKDPSRLVGQIHDGVSKAN 175
Score = 29.5 bits (66), Expect = 0.97
Identities = 27/177 (15%), Positives = 46/177 (25%), Gaps = 47/177 (26%)
Query: 12 PPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRLGRLHLAIPYTSPEAQVD 71
P +L + + K G+ V L+C ++ + L ++ +
Sbjct: 119 KPSLLAH--PGPLVKSGERVILQCWSDIMFE-HFFLHKEGISKDPSRLVGQIHDGVSKAN 175
Query: 72 --TPPVILNNS---------------------------------PQLSV-----AKEGQS 91
P++L + P LS + G+S
Sbjct: 176 FSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQAGES 235
Query: 92 VQLECHAEGHPIPTISWRRENNAI---LPNGQTIFTGSTLQIPRITKEDRGAYYCVA 145
V L C + RE A LP + + P G Y C
Sbjct: 236 VTLSCSSRSSYD-MYHLSREGGAHERRLPAVRKVNRTFQADFPLGPATHGGTYRCFG 291
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 44.4 bits (103), Expect = 1e-05
Identities = 15/89 (16%), Positives = 36/89 (40%), Gaps = 7/89 (7%)
Query: 90 QSVQLECHAEGHPIPTISWRRENNAILPNGQ--TIFTGSTLQIPRITKEDRGAYYCVAQ- 146
+ +L+C + + + W+ +N + + L I +++ D G Y C+++
Sbjct: 549 GTAELKCSQK-SNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEE 607
Query: 147 NGIGRGARR---KIEVKVEFAPIVTVQST 172
+ + K ++V+ P V T
Sbjct: 608 RVKNKTVFQVVAKHVLEVKVVPKPVVAPT 636
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 42.2 bits (99), Expect = 2e-05
Identities = 15/94 (15%), Positives = 25/94 (26%), Gaps = 17/94 (18%)
Query: 85 VAKEGQSVQLECHA-EGHPIPTISWRRENNAIL----PNGQTIFTGS------------T 127
G +V L ++W + + F
Sbjct: 15 TVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGA 74
Query: 128 LQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161
L I ++ KED Y G KI+++V
Sbjct: 75 LYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQV 108
Score = 27.6 bits (61), Expect = 1.7
Identities = 4/28 (14%), Positives = 7/28 (25%), Gaps = 1/28 (3%)
Query: 24 VAKEGQSVQLECHA-EGHPIPTISWRRN 50
G +V L ++W
Sbjct: 15 TVVSGSNVTLNISESLPENYKQLTWFYT 42
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 41.5 bits (97), Expect = 2e-05
Identities = 22/108 (20%), Positives = 30/108 (27%), Gaps = 30/108 (27%)
Query: 63 YTSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECH----AEGHPIPTISWRRENNA---I 115
Y V PP I EG S L C I +++W R+
Sbjct: 4 YFQGALWVSQPPEI--------RTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKE 55
Query: 116 LPNGQTIFTG---------------STLQIPRITKEDRGAYYCVAQNG 148
+ NG F G + L I + D Y C +
Sbjct: 56 VRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVL 103
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta
barrel, immunoglobulin fold, IGV domain, TIM, immune
system; 1.50A {Mus musculus}
Length = 115
Score = 41.1 bits (96), Expect = 3e-05
Identities = 21/112 (18%), Positives = 28/112 (25%), Gaps = 26/112 (23%)
Query: 80 SPQLSVAKEGQSVQLECH--AEGHPIPTISWRRENNAILPNGQTI--------------- 122
S G V L C I + W +++
Sbjct: 3 SHTAVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSR 62
Query: 123 --FTGS------TLQIPRITKEDRGAYYC-VAQNGIGRGARRKIEVKVEFAP 165
G+ +L I D G Y C V G +EVK E P
Sbjct: 63 YQLKGNISEGNVSLTIENTVVGDGGPYCCVVEIPGAFHFVDYMLEVKPELVP 114
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 43.5 bits (102), Expect = 3e-05
Identities = 17/106 (16%), Positives = 26/106 (24%), Gaps = 14/106 (13%)
Query: 70 VDTPPVILNNSPQLSVAKEGQSVQLEC-------HAEGHPIPTISWRRENNAILPNGQTI 122
+D I SP+ V + + C I W+ + I TI
Sbjct: 2 LDPCGYI---SPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTI 58
Query: 123 --FTGSTLQIPRITKEDRGAYYCVAQNGIGRG-ARRKIEVKVEFAP 165
T S++ I C I + P
Sbjct: 59 INRTASSVTFTDIAS-LNIQLTCNILTFGQLEQNVYGITIISGLPP 103
Score = 32.3 bits (73), Expect = 0.12
Identities = 17/166 (10%), Positives = 35/166 (21%), Gaps = 29/166 (17%)
Query: 9 VDTPPVILNNSTQLSVAKEGQSVQLEC-------HAEGHPIPTISWRRNFKRLGRLH--- 58
+D I S + V + + C I W+ N + +
Sbjct: 2 LDPCGYI---SPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTI 58
Query: 59 -------LAIPYTSPEAQVDTPPVILNNSPQLSVA--------KEGQSVQLECHAEGHPI 103
+ + T ++ + +V + L C
Sbjct: 59 INRTASSVTFTDIASLNIQLTCNILTFGQLEQNVYGITIISGLPPEKPKNLSCIVNEGKK 118
Query: 104 PTISWRRENNAILPNGQTIF-TGSTLQIPRITKEDRGAYYCVAQNG 148
W L T+ +T + + C
Sbjct: 119 MRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYS 164
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C
region, hinge region, immunoglobulin; HET: NAG FUL NDG
BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2
Length = 434
Score = 43.0 bits (101), Expect = 4e-05
Identities = 40/253 (15%), Positives = 73/253 (28%), Gaps = 32/253 (12%)
Query: 4 SPESQVDTPPVILNN-----STQLSV-AKEGQSVQLECHAEGHPIPTISWRRNFKRLGRL 57
S S V T P +L + S+ ++V + S + C+ T ++ R
Sbjct: 159 SLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPRDCG- 217
Query: 58 HLAIPYTSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEG--HPIPTISWRRE---- 111
+ V + + ++ C P + +
Sbjct: 218 ----CKPCICTVPEVSSVFIFPPKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNV 273
Query: 112 --NNAILPNGQTIFTG-----STLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE-- 162
+ A + F S L I + + C + K K +
Sbjct: 274 EVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGK 333
Query: 163 -FAPIVTVQSTRIGQALHHDMDLDCHIEAY-PHPI-LYWAKDGEIVVNDEYHSISNFGTS 219
AP V Q + L C I + P I + W DG+ N Y + +
Sbjct: 334 PRAPQVYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQSDGQAPEN--YKNTQPIMDT 391
Query: 220 EGTTGSLQCKVPV 232
+G+ + K+ V
Sbjct: 392 DGSY-FVYSKLNV 403
Score = 33.0 bits (75), Expect = 0.067
Identities = 35/189 (18%), Positives = 64/189 (33%), Gaps = 43/189 (22%)
Query: 85 VAKEGQSVQLECHAEGHPIP--TISWRREN--------NAILPNGQTI---------FTG 125
+A+ G SV++ C A G+ TI W ++ I P+ T
Sbjct: 10 LARPGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATL 69
Query: 126 S--------TLQIPRITKEDRGAYYCVAQNGI---GRGARRKIEVKVEFAPIVTVQSTRI 174
+ + + +T +D YYCV + + G+G + P V +
Sbjct: 70 TRDRSSNTANIHLSSLTSDDSAVYYCVREGEVPYWGQGTTVTVSSAKTTPPSVYPLAPGS 129
Query: 175 GQALHHDMDLDCHIEAY-PHPI-LYWAKDGEIVV---------NDEYHSIS--NFGTSEG 221
+ + L C ++ Y P P+ + W +D Y S +S
Sbjct: 130 AAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPR 189
Query: 222 TTGSLQCKV 230
+ ++ C V
Sbjct: 190 PSETVTCNV 198
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 42.2 bits (99), Expect = 5e-05
Identities = 14/126 (11%), Positives = 30/126 (23%), Gaps = 8/126 (6%)
Query: 84 SVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGST---LQIPRITKEDRGA 140
+ + + V + C + E + + IP + G
Sbjct: 16 FMVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQ 74
Query: 141 YYCVAQNGIG---RGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILY 197
Y C+ + G + V + + C ++ L
Sbjct: 75 YSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTATSMFLL 134
Query: 198 WAKDGE 203
K+G
Sbjct: 135 L-KEGR 139
Score = 40.7 bits (95), Expect = 2e-04
Identities = 13/77 (16%), Positives = 23/77 (29%), Gaps = 4/77 (5%)
Query: 71 DTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQI 130
DTP + ++ P G+ V C + +E + + +
Sbjct: 101 DTPTLSVHPGP---EVISGEKVTFYCRLDTAT-SMFLLLKEGRSSHVQRGYGKVQAEFPL 156
Query: 131 PRITKEDRGAYYCVAQN 147
+T RG Y C
Sbjct: 157 GPVTTAHRGTYRCFGSY 173
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold,
cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A
{Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Length = 192
Score = 41.7 bits (97), Expect = 6e-05
Identities = 19/155 (12%), Positives = 40/155 (25%), Gaps = 11/155 (7%)
Query: 80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRG 139
P+ + S+++ C + N IL + Q
Sbjct: 8 RPKKLAVEPKGSLEVNCSTTCNQPEVGGLETSLNKILLDEQA----QWKHYLVSNISHDT 63
Query: 140 AYYCVAQNGIGRGARRKIEVKVEFAP-IVTVQSTRIGQALHHDMDLDCHIE-AYPHPIL- 196
C G+ V V P V + A+ ++C + P L
Sbjct: 64 VLQCHFTCS-GKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLT 122
Query: 197 -YWAKDGEIVVNDEYHSISNFGTSEGTTGSLQCKV 230
+ + E + + + + + T +
Sbjct: 123 LFLFRGNETLHYETFGKAA--PAPQEATATFNSTA 155
Score = 35.9 bits (82), Expect = 0.005
Identities = 18/163 (11%), Positives = 39/163 (23%), Gaps = 38/163 (23%)
Query: 24 VAKEGQSVQLECHAEGHPIPTISWRRNFKRLGRLH------------------------- 58
+ S+++ C + + ++
Sbjct: 13 AVEPKGSLEVNCSTTCNQPEVGGLETSLNKILLDEQAQWKHYLVSNISHDTVLQCHFTCS 72
Query: 59 --LAIPYTSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEG-HPIP--TISWRRENN 113
++ VIL P L G+S +EC P+ T+ R N
Sbjct: 73 GKQESMNSNVSVYQPPRQVILTLQPTL--VAVGKSFTIECRVPTVEPLDSLTLFLFRGNE 130
Query: 114 AILPNGQTIFTG------STLQIPRITKEDRGAYYCVAQNGIG 150
+ +T ++ + C+A +
Sbjct: 131 TLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLM 173
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 41.0 bits (96), Expect = 8e-05
Identities = 14/126 (11%), Positives = 30/126 (23%), Gaps = 8/126 (6%)
Query: 84 SVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGST---LQIPRITKEDRGA 140
+ + + V + C + E + + IP + G
Sbjct: 13 FMVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQ 71
Query: 141 YYCVAQNGIGRGARR---KIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILY 197
Y C+ + G + V + + C ++ L
Sbjct: 72 YSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTATSMFL- 130
Query: 198 WAKDGE 203
K+G
Sbjct: 131 LLKEGR 136
Score = 39.4 bits (92), Expect = 3e-04
Identities = 12/73 (16%), Positives = 20/73 (27%), Gaps = 2/73 (2%)
Query: 73 PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPR 132
L+ P V G+ V C + +E + + +
Sbjct: 98 DTPTLSVHPGPEV-ISGEKVTFYCRLDTAT-SMFLLLKEGRSSHVQRGYGKVQAEFPLGP 155
Query: 133 ITKEDRGAYYCVA 145
+T RG Y C
Sbjct: 156 VTTAHRGTYRCFG 168
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens}
PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A
1f6a_B 1g84_A
Length = 323
Score = 41.6 bits (97), Expect = 1e-04
Identities = 21/177 (11%), Positives = 40/177 (22%), Gaps = 18/177 (10%)
Query: 64 TSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIP----TISWRRENNAILPNG 119
+ P +S + C ++W R + + +
Sbjct: 103 KKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHS 162
Query: 120 QTI---FTG------STLQIPRITKEDRGAYYCVAQNGI---GRGARRKIEVKVEFAPIV 167
STL + + Y C + AP V
Sbjct: 163 TRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEV 222
Query: 168 TVQSTRIGQALHHDMDLDCHIEA-YPHPI-LYWAKDGEIVVNDEYHSISNFGTSEGT 222
+T L C I+ P I + W + + + + + T
Sbjct: 223 YAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSG 279
Score = 30.0 bits (67), Expect = 0.55
Identities = 26/176 (14%), Positives = 48/176 (27%), Gaps = 20/176 (11%)
Query: 72 TPP-VILNNSPQLSVAKEGQSVQLECHAEGH-PIP-TISWRRENNAILPNGQTI------ 122
TPP V + S ++QL C G+ P I+W + + + T
Sbjct: 6 TPPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEG 65
Query: 123 ---FTGSTLQIPRITKEDRGAYYCVAQ--NGIGRGARRKIEVKVEFAPIVTV-QSTRIGQ 176
T S L + + Y C + +K + + +
Sbjct: 66 ELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSRPSPFDL 125
Query: 177 ALHHDMDLDCHIEAYPHPI----LYWAKDGEIVVNDEYHSISNF-GTSEGTTGSLQ 227
+ + C + L W++ VN + T +L
Sbjct: 126 FIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLP 181
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 39.4 bits (91), Expect = 1e-04
Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 6/81 (7%)
Query: 85 VAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT---GSTLQIPRITK-EDRGA 140
V+ G +V L C P I W+ + I + L + ++ E G
Sbjct: 17 VSISGTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGY 74
Query: 141 YYCVAQNGIGRGARRKIEVKV 161
Y C + A + ++
Sbjct: 75 YVCYPRGSKPEDANFYLYLRA 95
Score = 27.1 bits (59), Expect = 2.6
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 10 DTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL 54
+ I ++S++ G +V L C P I W+ N K +
Sbjct: 5 EEMGGITQTPYKVSIS--GTTVILTCPQY--PGSEILWQHNDKNI 45
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 41.0 bits (95), Expect = 1e-04
Identities = 29/185 (15%), Positives = 49/185 (26%), Gaps = 40/185 (21%)
Query: 86 AKEGQSVQLEC-------HAEGHPIPTISWRRENNAILPN-----------------GQT 121
+EG V + C P + W R+ G+
Sbjct: 12 VQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRF 71
Query: 122 IFTGS------TLQIPRITKEDRGAYYCVAQNGIGRG---ARRKIEVKVEFAPIVTVQST 172
G +L I ED G+Y+ + G + K+ ++V
Sbjct: 72 RLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHF 131
Query: 173 RIGQALHHDMDLDCHI----EAYPHPILYWAKDGEIVVNDEYHSISNF---GTSEGTTGS 225
L C + EA P W + ++ E S E +
Sbjct: 132 LEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPETTRSSELTLTPRPEDHGTN 191
Query: 226 LQCKV 230
L C++
Sbjct: 192 LTCQM 196
Score = 40.6 bits (94), Expect = 2e-04
Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 6/69 (8%)
Query: 87 KEGQSVQLECH----AEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYY 142
+ G+ +L C E P T SW NA+ P S L + ++
Sbjct: 136 ESGRPTRLSCSLPGSCEAGPPLTFSWTG--NALSPLDPETTRSSELTLTPRPEDHGTNLT 193
Query: 143 CVAQNGIGR 151
C + +
Sbjct: 194 CQMKRQGAQ 202
Score = 26.3 bits (57), Expect = 8.9
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 4/35 (11%)
Query: 20 TQLSVAKEGQSVQLECH----AEGHPIPTISWRRN 50
L + G+ +L C E P T SW N
Sbjct: 130 HFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGN 164
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 41.5 bits (96), Expect = 1e-04
Identities = 24/132 (18%), Positives = 36/132 (27%), Gaps = 4/132 (3%)
Query: 34 ECHAEGHPIPTISWRRNFKRLGRLHLAIPYTSPE--AQVDTPPVILNNSPQLSVAKEGQS 91
C P R + +P + P Q
Sbjct: 458 GCLMSRDPYCGWDQGRCISIYSSERSVLQSINPAEPHKECPNPKPDKAPLQKVSLAPNSR 517
Query: 92 VQLECHAEGHPIPTISWRRENNAILPNGQTIFTGS-TLQIPRITKEDRGAYYCVAQNGIG 150
L C E T SWR + N + + L I +T + G Y+C AQ G
Sbjct: 518 YYLSCPMES-RHATYSWRHKENVEQSCEPGHQSPNCILFIENLTAQQYGHYFCEAQEGSY 576
Query: 151 RGARRKIEVKVE 162
+ ++ E
Sbjct: 577 FREAQHWQLLPE 588
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin
mucin, signaling protein; 1.95A {Mus musculus} PDB:
3kaa_A*
Length = 109
Score = 39.1 bits (91), Expect = 1e-04
Identities = 13/105 (12%), Positives = 35/105 (33%), Gaps = 27/105 (25%)
Query: 85 VAKEGQSVQLECH---AEGHPIPTISWRRE--------NNAILPNGQTIFTGS------- 126
+ G++ L C + + W + N + + + +
Sbjct: 5 KVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLK 64
Query: 127 --------TLQIPRITKEDRGAYYC-VAQNGIGRGARRKIEVKVE 162
+L I +T +D G Y C + G+ + ++++ ++
Sbjct: 65 GDLNKGDVSLIIKNVTLDDHGTYCCRIQFPGLMNDKKLELKLDIK 109
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 40.2 bits (94), Expect = 2e-04
Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 4/70 (5%)
Query: 84 SVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTG---STLQIPRITKEDRGA 140
SV G SV + C +E + + Q + IP +T++ G
Sbjct: 14 SVISWGNSVTIWCQGT-LEAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGR 72
Query: 141 YYCVAQNGIG 150
Y C ++ +G
Sbjct: 73 YRCYYRSPVG 82
Score = 36.7 bits (85), Expect = 0.003
Identities = 24/161 (14%), Positives = 38/161 (23%), Gaps = 42/161 (26%)
Query: 23 SVAKEGQSVQLECHAEGHPIPTISWRRNFKRLGRLHLAIPYTSPEAQVDTPPVILNNS-- 80
SV G SV + C + +A+ P + + +
Sbjct: 14 SVISWGNSVTIWCQGT-LEAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGR 72
Query: 81 ----------------------------PQLS-----VAKEGQSVQLECHAEGHPIPTIS 107
P LS + G+SV L C + T
Sbjct: 73 YRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSPLVTSGKSVTLLCQSRSPM-DTFL 131
Query: 108 WRRENNAILPNGQTIFTGS-----TLQIPRITKEDRGAYYC 143
+E A G+ + +T G Y C
Sbjct: 132 LCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRC 172
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1; immunoglobulin-like fold, immune system; 1.85A {Homo
sapiens}
Length = 196
Score = 39.9 bits (93), Expect = 2e-04
Identities = 19/126 (15%), Positives = 35/126 (27%), Gaps = 8/126 (6%)
Query: 84 SVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGS---TLQIPRITKEDRGA 140
SV G SV + C +E + + Q IP +T+ G
Sbjct: 14 SVISRGNSVTIRCQGT-LEAQEYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGR 72
Query: 141 YYCVAQNGIGRGARR---KIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILY 197
Y C + G ++ V + ++ L C +
Sbjct: 73 YRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVTLQCGSRLRFDRFI- 131
Query: 198 WAKDGE 203
++G+
Sbjct: 132 LTEEGD 137
Score = 36.0 bits (83), Expect = 0.004
Identities = 14/81 (17%), Positives = 24/81 (29%), Gaps = 8/81 (9%)
Query: 73 PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILP---NGQTIFTGS--- 126
L+ P V G++V L+C + E + L + Q +G
Sbjct: 99 NKPTLSALPSPVV-TSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLDSQLTPSGQFQA 156
Query: 127 TLQIPRITKEDRGAYYCVAQN 147
+ +T R C
Sbjct: 157 LFPVGPVTPSHRWMLRCYGSR 177
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 39.1 bits (91), Expect = 3e-04
Identities = 20/128 (15%), Positives = 32/128 (25%), Gaps = 28/128 (21%)
Query: 80 SPQLSVAKEGQSVQLECH---AEGHPIPTISWRREN-----------------------N 113
A G +L C + + W R
Sbjct: 12 PGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRG 71
Query: 114 AILPNGQTIFTGS-TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQST 172
++I G L+I + D G Y C ++ + +E+KVE
Sbjct: 72 RTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQE-EAAVELKVEDPFYWINPGR 130
Query: 173 RIGQALHH 180
HH
Sbjct: 131 SRSHHHHH 138
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 38.3 bits (89), Expect = 3e-04
Identities = 26/100 (26%), Positives = 36/100 (36%), Gaps = 23/100 (23%)
Query: 86 AKEGQSVQLECHA-EGHPIPTISWR-RENNAIL---PNGQTIF--------------TGS 126
A G +V L+ H P I+W +N IL N G+
Sbjct: 15 AYTGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEENNGA 74
Query: 127 TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPI 166
L I + KED+G YY KI ++V F P+
Sbjct: 75 -LHISNVRKEDKGTYYMRVLRETENE--LKITLEV-FDPV 110
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 40.6 bits (94), Expect = 3e-04
Identities = 13/107 (12%), Positives = 26/107 (24%), Gaps = 1/107 (0%)
Query: 44 TISWRRNFKRLGRLHLAIPYTSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPI 103
I + L ++ + P PQ V G + C ++ +
Sbjct: 168 EIRCYIDNLHFSGLEEWSDWSPVKQISWIPDSQTKVFPQDKVILVGSDITFCCVSQEKVL 227
Query: 104 PTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIG 150
+ I +G+ + I + N G
Sbjct: 228 SALIGHTNCPLIHLDGENVAI-KIRNISVSASSGTNVVFTTEDNIFG 273
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C
region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC;
2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
b.1.1.2
Length = 444
Score = 40.3 bits (94), Expect = 3e-04
Identities = 42/254 (16%), Positives = 72/254 (28%), Gaps = 28/254 (11%)
Query: 4 SPESQVDTPPVILNNST-----QLSV-AKEGQSVQLECHAEGHPIPT-ISWRRNFKRLGR 56
S S V T P +L + ++V + S + C+ T + + +
Sbjct: 163 SLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPRGPTI 222
Query: 57 LHLAIPYTSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEG--HPIPTISWRRE-NN 113
+ P V + V S + C P + NN
Sbjct: 223 KPCPPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNN 282
Query: 114 AILPNGQTIF----------TGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE- 162
+ QT S L I + C N + K +
Sbjct: 283 VEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPAPIERTISKPKG 342
Query: 163 --FAPIVTVQSTRIGQALHHDMDLDCHIEA-YPHPI-LYWAKDGEIVVNDEYHSISNFGT 218
AP V V + + L C + P I + W +G+ +N Y +
Sbjct: 343 SVRAPQVYVLPPPEEEMTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELN--YKNTEPVLD 400
Query: 219 SEGTTGSLQCKVPV 232
S+G+ + K+ V
Sbjct: 401 SDGSY-FMYSKLRV 413
Score = 27.6 bits (61), Expect = 4.5
Identities = 20/86 (23%), Positives = 29/86 (33%), Gaps = 27/86 (31%)
Query: 85 VAKEGQSVQLECHAEGHPIPT--ISWRRENN--------AILPNGQTI---------FTG 125
+ + G S++L C G + W R+ I G + FT
Sbjct: 11 LVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTI 70
Query: 126 S--------TLQIPRITKEDRGAYYC 143
S LQ+ R+ ED YYC
Sbjct: 71 SRDNAKNTLYLQMSRLKSEDTAMYYC 96
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 39.0 bits (91), Expect = 4e-04
Identities = 22/123 (17%), Positives = 39/123 (31%), Gaps = 11/123 (8%)
Query: 84 SVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYC 143
S+ + V L C + + +++ + L IP + + G Y C
Sbjct: 17 SLVPLEKPVTLRCQGP-PGVDLYRLEKLSSSRYQDQAV------LFIPAMKRSLAGRYRC 69
Query: 144 VAQNGIGRGARRK-IEVKVEFAPIVTVQSTRIGQALH--HDMDLDCHIEAYPHPILYWAK 200
QNG +E+ S + G A+ D+ L C K
Sbjct: 70 SYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGDVTLQCQTRYGFDQFA-LYK 128
Query: 201 DGE 203
+G+
Sbjct: 129 EGD 131
Score = 37.9 bits (88), Expect = 0.001
Identities = 23/149 (15%), Positives = 38/149 (25%), Gaps = 32/149 (21%)
Query: 23 SVAKEGQSVQLECHAEGHPIPTISWR----RNFKRLGRLHLAIPYTSPE------AQVDT 72
S+ + V L C P +R + + + L IP
Sbjct: 17 SLVPLEKPVTLRCQG---PPGVDLYRLEKLSSSRYQDQAVLFIPAMKRSLAGRYRCSYQN 73
Query: 73 P--------PVILN-----NSPQLS-----VAKEGQSVQLECHAEGHPIPTISWRRENNA 114
+ L P LS G V L+C + +E +
Sbjct: 74 GSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGDVTLQCQTRYGF-DQFALYKEGDP 132
Query: 115 ILPNGQTIFTGSTLQIPRITKEDRGAYYC 143
+ ++ I +T G Y C
Sbjct: 133 APYKNPERWYRASFPIITVTAAHSGTYRC 161
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG
BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Length = 457
Score = 39.5 bits (92), Expect = 6e-04
Identities = 36/233 (15%), Positives = 71/233 (30%), Gaps = 22/233 (9%)
Query: 19 STQLSV-AKEGQSVQLECHAEGHPIPTISWRRNFKRLGRLHLAIPYTSPEAQVDTPPVIL 77
S+ ++V + + C+ P T ++ + P + P V L
Sbjct: 193 SSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKAEPKSCDKTHTCPPCPAPELLGGPSVFL 252
Query: 78 NNSPQLSVAKEGQSVQLECHAEG--HPIPTISW-RRENNAILPNGQTIF----------T 124
++ ++ C H P + + + + N +T
Sbjct: 253 FPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRV 312
Query: 125 GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE---FAPIVTVQSTRIGQALHHD 181
S L + + Y C N K K + P V + +
Sbjct: 313 VSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQ 372
Query: 182 MDLDCHIEAY-PHPI-LYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQCKVPV 232
+ L C ++ + P I + W +G+ N Y + S+G+ L K+ V
Sbjct: 373 VSLTCLVKGFYPSDIAVEWESNGQPENN--YKTTPPVLDSDGSF-FLYSKLTV 422
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 38.7 bits (90), Expect = 7e-04
Identities = 30/167 (17%), Positives = 47/167 (28%), Gaps = 44/167 (26%)
Query: 23 SVAKEGQSVQLECHA-----------EGHPIPTISWRRNFKRLGRLHLAIPYTSPE---- 67
SV +G V L C E P I+ + + + IP + E
Sbjct: 14 SVITQGSPVTLRCQGGQETQEYRLYREKKTAPWITRIPQ-ELVKKGQFPIPSITWEHTGR 72
Query: 68 ----------------AQVDTPPVILNNSPQLS-----VAKEGQSVQLECHAEGHPIPTI 106
++ P LS V G +V L+C ++
Sbjct: 73 YRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPSPVVNSGGNVTLQCDSQVAF-DGF 131
Query: 107 SWRRENNAILP---NGQTIFTGS---TLQIPRITKEDRGAYYCVAQN 147
+E P N Q GS + ++ R Y C A +
Sbjct: 132 ILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYD 178
Score = 36.7 bits (85), Expect = 0.002
Identities = 16/68 (23%), Positives = 19/68 (27%), Gaps = 4/68 (5%)
Query: 84 SVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGS---TLQIPRITKEDRGA 140
SV +G V L C RE + IP IT E G
Sbjct: 14 SVITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGR 72
Query: 141 YYCVAQNG 148
Y C +
Sbjct: 73 YRCYYGSD 80
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus
receptor, cell adhesion, integrin ligand, glycopr LFA-1
ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo
sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A
1d3e_I 1d3i_I 3tcx_A
Length = 185
Score = 38.2 bits (88), Expect = 8e-04
Identities = 20/136 (14%), Positives = 44/136 (32%), Gaps = 10/136 (7%)
Query: 80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITK-EDR 138
SP + G SV + C + LP + + G+ ++ ++ ++
Sbjct: 5 SPSKVILPRGGSVLVTCSTSCDQPKLLGIE----TPLPKKELLLPGNNRKVYELSNVQED 60
Query: 139 GAYYCVAQNGIGRGARRKIEVKVEFAP-IVTVQSTRIGQALHHDMDLDCHIEA-YPHPIL 196
C + + K + V + P V + Q + + L C +E P L
Sbjct: 61 SQPMCYSNCP-DGQSTAKTFLTVYWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQL 119
Query: 197 --YWAKDGEIVVNDEY 210
+ + + +
Sbjct: 120 TVVLLRGEKELKREPA 135
Score = 34.3 bits (78), Expect = 0.018
Identities = 22/159 (13%), Positives = 37/159 (23%), Gaps = 34/159 (21%)
Query: 24 VAKEGQSVQLECHAEGHPIPTISWRRNFKRLGRL---------------HLAIPY----- 63
+ G SV + C + + L + P
Sbjct: 10 ILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQPMCYSNC 69
Query: 64 ------TSPEAQVDTPP--VILNNSPQLSVAKEGQSVQLECHAEG-HPIP--TISWRREN 112
V P V L P G+ + L C EG P T+ R
Sbjct: 70 PDGQSTAKTFLTVYWTPERVELAPLPSW--QPVGKQLTLRCQVEGGAPRAQLTVVLLRGE 127
Query: 113 NAILPNGQTIFTGSTLQIPRITKEDRGAYY-CVAQNGIG 150
+ + ++ GA + C + +
Sbjct: 128 KELKREPAVGEPAEVTTTVLVRRDHHGAQFSCRTELDLR 166
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 38.8 bits (90), Expect = 0.001
Identities = 25/97 (25%), Positives = 32/97 (32%), Gaps = 26/97 (26%)
Query: 67 EAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEG-HPIPTISWRRENNAIL--------- 116
E QV P +SV G+S L C P+ I W R
Sbjct: 3 ELQVIQPD------KSVSV-AAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEG 55
Query: 117 --PNGQTI-FTGS------TLQIPRITKEDRGAYYCV 144
P T+ + ++ I IT D G YYCV
Sbjct: 56 HFPRVTTVSESTKRENMDFSISISNITPADAGTYYCV 92
Score = 38.0 bits (88), Expect = 0.002
Identities = 25/167 (14%), Positives = 57/167 (34%), Gaps = 19/167 (11%)
Query: 64 TSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEG--HPIPTISWRRENNAILPNGQT 121
T + ++ S + A +V C + G T+ W + N L + QT
Sbjct: 109 TELSVRAKPSAPVV--SGPAARATPQHTVSFTCESHGFSPRDITLKWFK-NGNELSDFQT 165
Query: 122 IF----------TGSTLQIPRITKEDRGAYYCVAQNGIGRGA--RRKIEVKVEFAPIVTV 169
ST ++ ++ C + +G R + T+
Sbjct: 166 NVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTL 225
Query: 170 QSTRIGQALHHDMDLDCHIEA-YPHPI-LYWAKDGEIVVNDEYHSIS 214
+ T+ + +++ C + YP + L W ++G + + +++
Sbjct: 226 EVTQQPVRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVT 272
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 36.7 bits (85), Expect = 0.001
Identities = 17/101 (16%), Positives = 34/101 (33%), Gaps = 23/101 (22%)
Query: 85 VAKEGQSVQLECH-----AEGHPIPTISWRRENNAIL---PNGQTIFTGS---------- 126
A ++ L C + + W+ + N +L G+ F
Sbjct: 5 QAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSF 64
Query: 127 -----TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE 162
TL++ + +D+G Y C+ + G R ++ E
Sbjct: 65 DSDSWTLRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQMNSE 105
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN;
1.75A {Gallus gallus}
Length = 231
Score = 38.1 bits (88), Expect = 0.001
Identities = 24/181 (13%), Positives = 52/181 (28%), Gaps = 17/181 (9%)
Query: 64 TSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIP---TISWRRENNAILPNGQ 120
+ AQ +P + P +L C P +++W RE + L
Sbjct: 3 SPDGAQSCSPIQLYAIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDP 62
Query: 121 TI--------FTG-STLQIPRITKEDRGAYYCVAQNG---IGRGARRKIEVKVEFAPIVT 168
+ ++ S + + + C Q+ + P++
Sbjct: 63 MVLQEHFNGTYSASSAVPVSTQDWLSGERFTCTVQHEELPLPLSKSVYRNTGPTTPPLIY 122
Query: 169 VQSTRIGQALHHDMDLDCHIEA-YPHPI-LYWAKDGEIVVNDEYHSISNFGTSEGTTGSL 226
+ + + L C + P I + W +D V E+ + + G+
Sbjct: 123 PFAPHPEELSLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATEFVTTAVLPEERTANGAG 182
Query: 227 Q 227
Sbjct: 183 G 183
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC,
antigen recognition, TCR-PMHC, membrane receptor system;
2.75A {Mus musculus}
Length = 256
Score = 37.8 bits (88), Expect = 0.001
Identities = 13/85 (15%), Positives = 24/85 (28%), Gaps = 21/85 (24%)
Query: 80 SPQLSVAKEGQSVQLECHAE-------------GHPIPTISWRRENNAILPNGQTI-FTG 125
SP+ V G++V L C GH + I + + +
Sbjct: 143 SPRNKVTVTGENVTLSCRQTNSHNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKA 202
Query: 126 S-------TLQIPRITKEDRGAYYC 143
+ L + + Y+C
Sbjct: 203 TRTTQEDFFLTLESASPSQTSLYFC 227
Score = 35.1 bits (81), Expect = 0.011
Identities = 14/80 (17%), Positives = 23/80 (28%), Gaps = 21/80 (26%)
Query: 85 VAKEGQSVQLECHAEGHPIPTISWRRE-------------NNAILPNGQTIFTGS----- 126
EG S+QL C P + W + + + G F
Sbjct: 14 TVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSD 73
Query: 127 ---TLQIPRITKEDRGAYYC 143
L+ + + D Y+C
Sbjct: 74 SSFHLRKASVHRSDSAVYFC 93
Score = 26.6 bits (59), Expect = 7.1
Identities = 10/31 (32%), Positives = 12/31 (38%), Gaps = 3/31 (9%)
Query: 20 TQLS---VAKEGQSVQLECHAEGHPIPTISW 47
TQ EG S+QL C P + W
Sbjct: 7 TQPDARVTVSEGASLQLRCKYSYSATPYLFW 37
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL
BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2
b.1.1.2 PDB: 1i1a_D*
Length = 239
Score = 37.6 bits (87), Expect = 0.002
Identities = 23/153 (15%), Positives = 45/153 (29%), Gaps = 18/153 (11%)
Query: 71 DTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIP----TISWRRENNAILP--------- 117
+ V + V G + ++ C SW ++ +
Sbjct: 14 EVSSVFIFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQ 73
Query: 118 NGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEF---APIVTVQSTRI 174
+ T+ + S L I + + C +G K K E P V +
Sbjct: 74 SNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFPAPIEKSISKPEGTPRGPQVYTMAPPK 133
Query: 175 GQALHHDMDLDCHIEA-YPHPI-LYWAKDGEIV 205
+ + + C ++ YP I W +G+
Sbjct: 134 EEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQ 166
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid
IG-like receptor, inhibitory receptor, myelo-monocytic
cells; 2.60A {Homo sapiens}
Length = 124
Score = 36.4 bits (84), Expect = 0.002
Identities = 17/114 (14%), Positives = 34/114 (29%), Gaps = 24/114 (21%)
Query: 81 PQLSVAKEGQSVQLECH-AEGHPIPTISWRRENNAILPNGQTIFTGS------------- 126
P E S+ ++C G W R + T
Sbjct: 9 PTTVNGLERGSLTVQCVYRSGWETYLKWWCRGAIWRDCKI-LVKTSGSEQEVKRDRVSIK 67
Query: 127 --------TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQST 172
T+ + + K D Y+C + G ++V ++ AP+ +++
Sbjct: 68 DNQKNRTFTVTMEDLMKTDADTYWCGIEKT-GNDLGVTVQVTIDPAPVTQEETS 120
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta
barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 36.1 bits (83), Expect = 0.002
Identities = 16/108 (14%), Positives = 33/108 (30%), Gaps = 26/108 (24%)
Query: 85 VAKEGQSVQLECH--AEGHPIPTISWRRENNAILPNGQTI-----------------FTG 125
+ GQ V L CH + ++ W + + + G
Sbjct: 7 IGFLGQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTLLG 66
Query: 126 S------TLQIPRITKEDRGAYYC-VAQNGIGRGARRKIEVKVEFAPI 166
+L I + D G Y C + G ++ + +++ A +
Sbjct: 67 KVQFGEVSLTISNTNRGDSGVYCCRIEVPGWFNDVKKNVRLELRRALV 114
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell
receptor delta, immune system; HET: NAG MAN FUC; 3.40A
{Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 207
Score = 37.2 bits (86), Expect = 0.002
Identities = 36/180 (20%), Positives = 56/180 (31%), Gaps = 39/180 (21%)
Query: 69 QVDTPPVILNNSPQLSVAKEGQSVQLECHAE-------------GHPIPTISWRRENNAI 115
QV+ P LS+ EG L C+ + ++ +
Sbjct: 3 QVEQSP------SALSL-HEGTDSALRCNFTTTMRSVQWFRQNSRGSLISLFYLASGTK- 54
Query: 116 LPNGQ-TIFTGS------TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAP--I 166
NG+ S TL I ED G Y+C A K+ F
Sbjct: 55 -ENGRLKSAFDSKERRYSTLHIRDAQLEDSGTYFCAADTWHISEGYELGTDKLVFGQGTQ 113
Query: 167 VTVQSTRIGQA------LHHDMDLDCHI-EAYPHPI-LYWAKDGEIVVNDEYHSISNFGT 218
VTV+ A + + ++ C + + YP + + +IV D IS G
Sbjct: 114 VTVEPKSQPPAKPSVFIMKNGTNVACLVKDFYPKEVTISLRSSKKIVEFDPAIVISPSGK 173
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 36.0 bits (83), Expect = 0.002
Identities = 20/125 (16%), Positives = 35/125 (28%), Gaps = 40/125 (32%)
Query: 69 QVDTPPVILNNSPQLSVAKEGQSVQLECH----AEGHPIPTISWRRENNA--------IL 116
+ TP ++ +G++ L C E I W IL
Sbjct: 7 SITTPEEMI-------EKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIIL 59
Query: 117 PNGQTIFTGS--------------------TLQIPRITKEDRGAYYCVAQNGIGRGARRK 156
+G I+ ++ + + D G Y C + G +K
Sbjct: 60 YSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVA-NKK 118
Query: 157 IEVKV 161
I + V
Sbjct: 119 IHLVV 123
>4f9p_D 103.2 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin,
CD277, immune system; 3.52A {Mus musculus}
Length = 254
Score = 36.5 bits (85), Expect = 0.003
Identities = 25/95 (26%), Positives = 34/95 (35%), Gaps = 20/95 (21%)
Query: 86 AKEGQSVQLECHAEGHPIPTISWRRE-----------NNAILPNG-QTIFTGS------T 127
G SV L C A + W R+ + G + F+GS T
Sbjct: 149 VTPGDSVSLSCRASQSISNNLHWYRQKSHESPRLLIKYASQSIFGIPSRFSGSGSGTEFT 208
Query: 128 LQIPRITKEDRGAYYCVAQNGIGR--GARRKIEVK 160
L I + ED G Y+C N G K+E+K
Sbjct: 209 LSINSVETEDFGIYFCQQSNSWPHTFGTGTKLELK 243
>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system;
3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Length = 242
Score = 36.5 bits (85), Expect = 0.004
Identities = 23/100 (23%), Positives = 32/100 (32%), Gaps = 28/100 (28%)
Query: 81 PQLSVAKE-GQSVQLECHAEGHPIPT--ISWRREN--------NAILPNGQTI------- 122
PQ+S K ++ +LEC G I + W RE +I +G
Sbjct: 7 PQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPS 66
Query: 123 --FTGS--------TLQIPRITKEDRGAYYCVAQNGIGRG 152
F TL I + K+D YYC
Sbjct: 67 GKFEVDRIPETSTSTLTIHNVEKQDIATYYCALWEAQQEL 106
>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV,
immune system; 2.10A {Mus musculus} PDB: 3h3b_C
Length = 264
Score = 36.2 bits (84), Expect = 0.004
Identities = 21/112 (18%), Positives = 38/112 (33%), Gaps = 26/112 (23%)
Query: 75 VILNNSPQLSVAKEGQSVQLECHAEGHPIPT------ISWRRE------------NNAIL 116
++L +P G+ V + C + + + ++W ++
Sbjct: 6 IVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRK 65
Query: 117 PNGQTIFTGS------TLQIPRITKEDRGAYYCVAQNGIGR--GARRKIEVK 160
FTGS TL I + ED YYC + G ++E+K
Sbjct: 66 SGVPDRFTGSGSGTDFTLTIGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIK 117
Score = 27.0 bits (60), Expect = 4.6
Identities = 24/96 (25%), Positives = 35/96 (36%), Gaps = 27/96 (28%)
Query: 85 VAKEGQSVQLECHAEGHPIPT--ISWRREN--------NAILPN-----------GQTIF 123
V K G SV++ C A G+ I+W ++N I + + F
Sbjct: 149 VVKTGASVKISCKASGYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAF 208
Query: 124 TGST------LQIPRITKEDRGAYYCVAQNGIGRGA 153
T T +Q+ +T ED YYCV A
Sbjct: 209 TVDTSSSTAFMQLNSLTSEDSADYYCVRSGNYEEYA 244
>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody,
virus/viral protein/antibiotic complex; 2.30A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.1
Length = 247
Score = 36.1 bits (84), Expect = 0.005
Identities = 27/111 (24%), Positives = 39/111 (35%), Gaps = 20/111 (18%)
Query: 75 VILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRE-----------NNAILPNG-QTI 122
L SP G+ L C A ++W ++ + + G
Sbjct: 136 TTLTQSPATLSLSPGERATLSCRASQSVRSNLAWYQQKPGQAPRPLIYDASTRATGIPDR 195
Query: 123 FTGS------TLQIPRITKEDRGAYYCVAQNGIGR--GARRKIEVKVEFAP 165
F+GS TL I R+ ED YYC ++ G K+EVK P
Sbjct: 196 FSGSGSGTDFTLTISRLEPEDFAVYYCQQRSNWPPTFGQGTKVEVKSGLVP 246
Score = 26.5 bits (59), Expect = 6.4
Identities = 21/93 (22%), Positives = 31/93 (33%), Gaps = 27/93 (29%)
Query: 85 VAKEGQSVQLECHAEGHPIPT--ISWRREN--------NAILPNGQTI---------FTG 125
V + G+S++L C A G + + W R+ I +G FT
Sbjct: 13 VVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTI 72
Query: 126 S--------TLQIPRITKEDRGAYYCVAQNGIG 150
S LQ+ + ED YYC
Sbjct: 73 SRDNSKNTLYLQMNSLRAEDTAVYYCARDRSYY 105
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens}
PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Length = 246
Score = 36.0 bits (83), Expect = 0.005
Identities = 25/123 (20%), Positives = 37/123 (30%), Gaps = 33/123 (26%)
Query: 80 SPQLSVAKEGQSVQLECHAEGHPIPTISW--------------RRENNAILPNGQTI--- 122
P ++K G SV++EC + T+ W E +
Sbjct: 7 HPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDK 66
Query: 123 FTGS-------TLQIPRITKEDRGAYYCVAQN---------GIGRGARRKIEVKVEFAPI 166
F + TL + ED Y C A+ G G ++K F P
Sbjct: 67 FLINHASLTLSTLTVTSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPE 126
Query: 167 VTV 169
V V
Sbjct: 127 VAV 129
Score = 26.3 bits (58), Expect = 7.7
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 20 TQLS---VAKEGQSVQLECHAEGHPIPTISW 47
+Q ++K G SV++EC + T+ W
Sbjct: 5 SQHPSWVISKSGTSVKIECRSLDFQATTMFW 35
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 34.9 bits (80), Expect = 0.006
Identities = 22/120 (18%), Positives = 34/120 (28%), Gaps = 33/120 (27%)
Query: 70 VDTPPVILNNSPQLSVAKEGQSVQLECHAEG-HPIPTISWRR--------ENNAILPNGQ 120
+D+ + G V L C I T W R +N I NG
Sbjct: 1 MDSYVEV--------KGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGH 52
Query: 121 TIFTGS---------------TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAP 165
+ +L I + D G Y C + G +K+ ++ P
Sbjct: 53 RVTYQKSSRYNLKGHISEGDVSLTIENSVESDSGLYCCRVEIP-GWFNDQKVTFSLQVKP 111
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system;
2.68A {Homo sapiens} PDB: 3hg1_E
Length = 245
Score = 36.0 bits (83), Expect = 0.006
Identities = 24/122 (19%), Positives = 34/122 (27%), Gaps = 32/122 (26%)
Query: 80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRR-------------ENNAILPNG-QTIFTG 125
P V G + LEC EG P + W R + + +
Sbjct: 7 WPATLVQPVGSPLSLECTVEGTSNPNLYWYRQAAGRGLQLLFYSVGIGQISSEVPQNLSA 66
Query: 126 S-------TLQIPRITKEDRGAYYCVAQNGIGRGARR-------KIEVKVE----FAPIV 167
S L ++ D G Y C +G G + V + F P V
Sbjct: 67 SRPQDRQFILSSKKLLLSDSGFYLCAWSVSVGAGVPTIYFGEGSWLTVVEDLNKVFPPEV 126
Query: 168 TV 169
V
Sbjct: 127 AV 128
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell,
HLA, major histocompatibility complex class I (MHC class
I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 257
Score = 36.1 bits (83), Expect = 0.006
Identities = 20/148 (13%), Positives = 42/148 (28%), Gaps = 13/148 (8%)
Query: 84 SVAKEGQSVQLECHAEGHPIPTISWRRENNAILP---NGQTIFTGS--TLQIPRITKEDR 138
+ K ++V L+C ++ RE G+ S I + ++
Sbjct: 16 PLVKSEETVILQCWSD-VRFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLA 74
Query: 139 GAYYCVAQNGIGRGARRK----IEVKVEFAPIVTVQSTRIGQALH--HDMDLDCHIEAYP 192
G Y C +++ + S + G + + L C +
Sbjct: 75 GTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVLAGESVTLSCSSRSSY 134
Query: 193 HPILYWAKDGEIVVNDEYHSISNFGTSE 220
+++GE GT +
Sbjct: 135 DMYH-LSREGEAHERRFSAGPKVNGTFQ 161
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse
IGG, zinc-finger, DNA-binding, RNA-binding, tripartite
motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus
musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Length = 207
Score = 35.6 bits (82), Expect = 0.007
Identities = 18/135 (13%), Positives = 32/135 (23%), Gaps = 18/135 (13%)
Query: 89 GQSVQLECHAEGHPIP----TISWRRENNAILPNGQTIFTG---------STLQIPRITK 135
+ ++ C SW ++ + S L I
Sbjct: 18 TLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDW 77
Query: 136 EDRGAYYCVAQNG---IGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEA-Y 191
+ + C + AP V Q + L C I +
Sbjct: 78 LNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFF 137
Query: 192 PHPI-LYWAKDGEIV 205
P I + W +G+
Sbjct: 138 PEDITVEWESNGQPA 152
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II,
MEM receptor, molecular mimicry, multiple sclerosis,
immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo
sapiens}
Length = 279
Score = 36.0 bits (83), Expect = 0.007
Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 24/93 (25%)
Query: 75 VILNNSPQLSVAKEGQSVQLECHAEGHPIPTISW--------------RRENNAILPNGQ 120
+++ P ++K G SV++EC + T+ W E +
Sbjct: 25 AVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQG 84
Query: 121 TI---FTGS-------TLQIPRITKEDRGAYYC 143
F + TL + ED Y C
Sbjct: 85 VEKDKFLINHASLTLSTLTVTSAHPEDSSFYIC 117
Score = 26.4 bits (58), Expect = 8.1
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 24 VAKEGQSVQLECHAEGHPIPTISW 47
++K G SV++EC + T+ W
Sbjct: 35 ISKSGTSVKIECRSLDFQATTMFW 58
>4f9l_D 20.1 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin,
CD277, immune system; HET: NAG; 3.14A {Mus musculus}
Length = 259
Score = 35.7 bits (83), Expect = 0.007
Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 18/87 (20%)
Query: 75 VILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRR------------ENNAILPNGQTI 122
++L SP A G ++ + CHA + +SW + + + +
Sbjct: 2 IVLTQSPSSLSASLGDTITITCHASQNINLWLSWYQQRPGNIPKLLIYRASNLHTGVPSR 61
Query: 123 FTGS------TLQIPRITKEDRGAYYC 143
F+GS TL I + ED YYC
Sbjct: 62 FSGSGSATGFTLTISSLQPEDIATYYC 88
Score = 26.5 bits (59), Expect = 7.5
Identities = 21/94 (22%), Positives = 31/94 (32%), Gaps = 27/94 (28%)
Query: 87 KEGQSVQLECHAEGHPIPT--ISWRREN--------NAILPNGQTI-----FTG------ 125
K G SV+L C A G+ + W ++ I PN F
Sbjct: 144 KPGASVKLSCKASGYTFTRYYLYWVKQRPGQGLEWIGEINPNNGGTKFNEKFKSKATLTV 203
Query: 126 ----ST--LQIPRITKEDRGAYYCVAQNGIGRGA 153
T +Q+ +T ED YYC ++
Sbjct: 204 DKSSRTTYIQLSSLTSEDSAVYYCSREDDYDGTP 237
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D,
mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo
sapiens}
Length = 253
Score = 35.3 bits (81), Expect = 0.010
Identities = 12/94 (12%), Positives = 26/94 (27%), Gaps = 21/94 (22%)
Query: 80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRR---------------ENNAILPNGQTIFT 124
+P+ + GQ+V L C + P +SW + + + +
Sbjct: 7 NPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADY 66
Query: 125 GS------TLQIPRITKEDRGAYYCVAQNGIGRG 152
+ L++ YC +
Sbjct: 67 LATRVTDTELRLQVANMSQGRTLYCTSSADHWTN 100
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin
fold, immune surveillance of cell stress PROT A/B,
MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Length = 259
Score = 35.2 bits (81), Expect = 0.010
Identities = 10/89 (11%), Positives = 22/89 (24%), Gaps = 25/89 (28%)
Query: 80 SPQLSVAKEGQSVQLECHAEGHPIPTISW-----------------RRENNAILPNGQTI 122
+ + + G S ++ C I W + +
Sbjct: 8 RTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPG 67
Query: 123 FTGS--------TLQIPRITKEDRGAYYC 143
+ + + + + D G YYC
Sbjct: 68 KYDTYGSTRKNLRMILRNLIENDSGVYYC 96
Score = 32.5 bits (74), Expect = 0.078
Identities = 17/157 (10%), Positives = 35/157 (22%), Gaps = 34/157 (21%)
Query: 29 QSVQLE------CHAEGHPIPTISWRRNFKRLGRLHLAIPYTSPEAQVDTPPVILNNSPQ 82
+++ C + + + + Q
Sbjct: 84 RNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQ 143
Query: 83 LSV-AKEGQSVQLECHAEGH-PIPTISWRR---------------ENNAILPNGQTIFTG 125
SV ++V L C E I W + + ++
Sbjct: 144 SSVSMPVRKAVTLNCLYETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGR---YSV 200
Query: 126 S--------TLQIPRITKEDRGAYYCVAQNGIGRGAR 154
+ L I + ED Y+C + R +
Sbjct: 201 NFKKAAKSVALTISALQLEDSAKYFCALGESLTRADK 237
Score = 28.6 bits (64), Expect = 1.7
Identities = 5/24 (20%), Positives = 9/24 (37%)
Query: 24 VAKEGQSVQLECHAEGHPIPTISW 47
+ + G S ++ C I W
Sbjct: 13 IRQTGSSAEITCDLAEGSTGYIHW 36
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 34.9 bits (80), Expect = 0.011
Identities = 21/150 (14%), Positives = 40/150 (26%), Gaps = 13/150 (8%)
Query: 84 SVAKEGQSVQLECHAEGHPIPTISWRRENNAI---LPNGQTIFTGST--LQIPRITKEDR 138
+ K ++V L+C ++ RE G+ S I R+T++
Sbjct: 17 PLVKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLA 75
Query: 139 GAYYCVAQNGIGRGARRK------IEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYP 192
G Y C I + + ++ L C +
Sbjct: 76 GTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPTVLAGENVTLSCSSRSSY 135
Query: 193 HPILYWAKDGEIVVNDEYHSISNFGTSEGT 222
+++GE GT +
Sbjct: 136 DMYH-LSREGEAHERRLPAGPKVNGTFQAD 164
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein
complex, hydrolase/immune system complex; 1.45A
{Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Length = 113
Score = 33.5 bits (77), Expect = 0.013
Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 27/102 (26%)
Query: 68 AQVDTPPVILNNSPQLSVAKEGQSVQLECHAEG--HPIPTISW--------RRENNAI-- 115
A+VD P ++ G+S+ + C + + + W E+ +
Sbjct: 1 ARVDQTP------RSVTKE-TGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGG 53
Query: 116 -----LPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRG 152
+ +G F+ L+I +T ED G Y C G
Sbjct: 54 RYVETVNSGSKSFS---LRINDLTVEDGGTYRCGLGVAGGYC 92
>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F
membrane, envelope protein, fusion protein, membrane,
trans virion; HET: NAG BMA; 3.20A {Homo sapiens}
Length = 280
Score = 35.0 bits (81), Expect = 0.013
Identities = 19/89 (21%), Positives = 30/89 (33%), Gaps = 21/89 (23%)
Query: 75 VILNNSPQLSVAKEGQSVQLECHAEGHPIPT--ISWRRE-----------NNAILPNG-Q 120
L P +S Q+ L C + + +W ++ N P+G
Sbjct: 141 PGLTQPPSVSK-GLRQTATLTCTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGIS 199
Query: 121 TIFTGS------TLQIPRITKEDRGAYYC 143
F+ S +L I + ED YYC
Sbjct: 200 ERFSASRSGNTASLTITGLQPEDEADYYC 228
>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell
surface receptor, triggering receptor, platelet
receptor, ITIM, immune system; 1.19A {Homo sapiens}
Length = 106
Score = 33.3 bits (76), Expect = 0.013
Identities = 16/103 (15%), Positives = 33/103 (32%), Gaps = 25/103 (24%)
Query: 81 PQLSVAKEGQSVQLECH-AEGHPIPTISWRREN--------------------NAILPN- 118
P++ A G S+ ++CH W R L +
Sbjct: 4 PEVLQAPVGSSILVQCHYRLQDVKAQKVWCRFLPEGCQPLVSSAVDRRAPAGRRTFLTDL 63
Query: 119 GQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161
G + +++ + +ED G Y C+ G ++ + +
Sbjct: 64 GGGLLQ---VEMVTLQEEDAGEYGCMVDGARGPQILHRVSLNI 103
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 33.7 bits (77), Expect = 0.013
Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 27/85 (31%)
Query: 86 AKEGQSVQLECHAEGHPIPT-----ISWRRENNA-------------ILPNGQTIFTGS- 126
G SV L C+ + + ++W R + + + F +
Sbjct: 12 GFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAAR 71
Query: 127 --------TLQIPRITKEDRGAYYC 143
+L++ + ED G Y C
Sbjct: 72 LGAELRNASLRMFGLRVEDEGNYTC 96
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC
complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A
{Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A*
3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A*
3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A*
2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Length = 207
Score = 34.5 bits (79), Expect = 0.013
Identities = 22/149 (14%), Positives = 40/149 (26%), Gaps = 18/149 (12%)
Query: 73 PPVILNNSPQLSVAKEGQSVQLECHAEG----HPIPTISWRRENNAILPNGQTIFTG--- 125
P V L ++ ++ C P +W + +
Sbjct: 2 PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYN 61
Query: 126 ------STLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEF---APIVTVQSTRIGQ 176
S L + + Y C N K K + P V +
Sbjct: 62 STYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDE 121
Query: 177 ALHHDMDLDCHIEA-YPHPI-LYWAKDGE 203
+ + L C ++ YP I + W +G+
Sbjct: 122 LTKNQVSLTCLVKGFYPSDIAVEWESNGQ 150
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 33.8 bits (77), Expect = 0.015
Identities = 21/123 (17%), Positives = 38/123 (30%), Gaps = 30/123 (24%)
Query: 25 AKEGQSVQLECH----AEGHPIPTISWRRNFKRLGRLHLAIPYTSPEAQVDTPPVILNNS 80
+ G +V+L CH G I ++W+R ++A +
Sbjct: 14 GQLGGTVELPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPK--------------- 58
Query: 81 PQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGA 140
G S +S+ + + + +TL + +T ED G
Sbjct: 59 -------MGPSFPSPKPGSER----LSFVSAKQSTGQDTEAELQDATLALHGLTVEDEGN 107
Query: 141 YYC 143
Y C
Sbjct: 108 YTC 110
>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen,
beta-turn, immune system; HET: NLE; NMR {Rattus
norvegicus} SCOP: b.1.1.1 b.1.1.1
Length = 257
Score = 34.7 bits (80), Expect = 0.015
Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 26/86 (30%)
Query: 84 SVAKEGQSVQLECHAEGHPIPT--ISWRREN--------NAILPNGQTI--------FTG 125
+ + +++ L C G + + +SW R + +G T +
Sbjct: 10 GLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSI 69
Query: 126 S--------TLQIPRITKEDRGAYYC 143
S L++ + +D G YYC
Sbjct: 70 SRDTSKNQVFLKMNSLQTDDTGTYYC 95
Score = 27.0 bits (60), Expect = 4.7
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 9/46 (19%)
Query: 123 FTGS------TLQIPRITKEDRGAYYCVAQNGIGR--GARRKIEVK 160
F+GS TL I + ED Y+C Q G GA K+E+K
Sbjct: 200 FSGSGSGTDYTLTISSLQPEDVATYFC-YQYNNGYTFGAGTKLELK 244
>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor
CD8AB MHC complex, immune response, membrane, MHC I,
phosphoprotein, transmembrane; 2.60A {Mus musculus}
Length = 166
Score = 34.2 bits (78), Expect = 0.015
Identities = 19/119 (15%), Positives = 35/119 (29%), Gaps = 29/119 (24%)
Query: 80 SPQLSVAKEGQSVQLECHAEGHPIPTISW--RRENNAI---------------------L 116
P+ A+ GQ V L C G SW + ++ + L
Sbjct: 15 FPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKL 74
Query: 117 PNGQTIFTGS------TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTV 169
+ + L + + +KE+ G Y+C + + V + T
Sbjct: 75 NSSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYFSSVVPVLQKVNSTTTK 133
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin
domain, microsome, protein disulfide isomerase,
thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo
sapiens}
Length = 401
Score = 35.0 bits (79), Expect = 0.016
Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 6/85 (7%)
Query: 124 TGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTV--QSTRIGQALHHD 181
T +PR+ G Y +G + +E+ V P V++ +
Sbjct: 252 GNGTFWLPRVQPFQEGTYLATIHLPYLQG-QVTLELAVYKPPKVSLMPATLARAAPGEAP 310
Query: 182 MDLDCHIEA-YPHPI--LYWAKDGE 203
+L C + YP + W G
Sbjct: 311 PELLCLVSHFYPSGGLEVEWELRGG 335
Score = 28.4 bits (62), Expect = 2.3
Identities = 22/113 (19%), Positives = 31/113 (27%), Gaps = 20/113 (17%)
Query: 70 VDTPPVILNNSPQLSVAKEGQSVQLECHAEGH---PIPTISWRR----ENNAILPNGQTI 122
P V L + A +L C + W + GQ
Sbjct: 289 YKPPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRW 348
Query: 123 FTG------------STLQIPRITKEDRGAYY-CVAQNGIGRGARRKIEVKVE 162
+ LQ P +T E GA Y C + + R EV +E
Sbjct: 349 LSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPASGRSAEVTLE 401
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology,
X-RAY solution scattering, constrained modelling, immune
system; NMR {Homo sapiens}
Length = 523
Score = 34.8 bits (80), Expect = 0.017
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 19/92 (20%)
Query: 75 VILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRE-----------NNAILPNG-QTI 122
+L P S GQ V + C T++W ++ +A+ P+G T
Sbjct: 2 SVLTQPPSASG-TPGQRVTISCTGTSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTR 60
Query: 123 FTGS------TLQIPRITKEDRGAYYCVAQNG 148
F+GS +L I + ED YYC + N
Sbjct: 61 FSGSKSGTSASLAISGLEAEDESDYYCASWNS 92
Score = 32.1 bits (73), Expect = 0.14
Identities = 27/179 (15%), Positives = 48/179 (26%), Gaps = 20/179 (11%)
Query: 62 PYTSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEG----HPIPTISWRRENNAIL- 116
+ P V L ++ ++ C P +W + +
Sbjct: 307 KVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHN 366
Query: 117 --------PNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE---FAP 165
T S L + D Y C N K K + P
Sbjct: 367 AKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKAKGQPREP 426
Query: 166 IVTVQSTRIGQALHHDMDLDCHIEA-YPHPIL-YWAKDGEIVVNDEYHSISNFGTSEGT 222
V + + + L C ++ YP I W +G+ + Y + S+G+
Sbjct: 427 QVYTLPPSREEMTKNQVSLTCLVKGFYPSDIAVEWESNGQPE--NNYKTTPPVLDSDGS 483
>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune
system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A*
3uyp_A* 3uzv_B 1dzb_A
Length = 253
Score = 34.6 bits (80), Expect = 0.018
Identities = 20/105 (19%), Positives = 34/105 (32%), Gaps = 24/105 (22%)
Query: 80 SPQLSVAKEGQSVQLECHAEGHPIP----TISWRR------------ENNAILPNGQTIF 123
+P GQ + C A + + W + + + F
Sbjct: 139 TPASLAVSLGQRATISCRASENVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARF 198
Query: 124 TGS------TLQIPRITKEDRGAYYCVAQNGIGR--GARRKIEVK 160
+GS TL I + +D Y+C N + G K+E+K
Sbjct: 199 SGSGSRTDFTLTINPVEADDVATYFCQRSNEVPWTFGGGTKLEIK 243
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody,
immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL
SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2
b.1.1.2 PDB: 2qej_A*
Length = 214
Score = 34.5 bits (79), Expect = 0.018
Identities = 21/152 (13%), Positives = 38/152 (25%), Gaps = 15/152 (9%)
Query: 89 GQSVQLECHAEGHPIP---TISWRRENNAILPNGQ-------TIFTGSTLQIPRITKEDR 138
G L C G T +W + G S L
Sbjct: 19 GSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHG 78
Query: 139 GAYYCVAQNGIGRGARRKIEVKVEFAPIVTV---QSTRIGQALHHDMDLDCHIEA-YPHP 194
+ C A + K V AL+ + L C P
Sbjct: 79 KTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKD 138
Query: 195 I-LYWAKDGEIVVNDEYHSISNFGTSEGTTGS 225
+ + W + + + ++Y + ++ T +
Sbjct: 139 VLVRWLQGSQELPREKYLTWASRQEPSQGTTT 170
>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY
high affinity, antibody binding, electrostatics,
directed evolution; HET: FLU; 1.50A {Homo sapiens}
Length = 268
Score = 34.3 bits (79), Expect = 0.020
Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 23/92 (25%)
Query: 75 VILNNSPQLSVAKEGQSVQLECHAEGHPIPT-----ISWRRE-----------NNAILPN 118
V++ +P G + C + + + + W + + +
Sbjct: 16 VVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVS 75
Query: 119 G-QTIFTGS------TLQIPRITKEDRGAYYC 143
G F+GS TL+I R+ ED G Y+C
Sbjct: 76 GVPDRFSGSGSGTDFTLKINRVEAEDLGVYFC 107
Score = 30.4 bits (69), Expect = 0.37
Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 29/90 (32%)
Query: 84 SVAKEGQSVQLECHAEGHPIPT--ISWRREN-----------NAILPNGQTI-------- 122
+ + G +++L C G ++W R++ N +T
Sbjct: 161 GLVQPGGAMKLSCVTSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGR 220
Query: 123 FTGS--------TLQIPRITKEDRGAYYCV 144
FT S LQ+ + ED G YYC
Sbjct: 221 FTISRDDSKSSVYLQMNNLRVEDTGIYYCT 250
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus
musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A
1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B
2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B*
2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Length = 238
Score = 34.2 bits (78), Expect = 0.025
Identities = 27/160 (16%), Positives = 47/160 (29%), Gaps = 34/160 (21%)
Query: 80 SPQLSVAKEGQSVQLECHAE-------------GHPIPTISWRRENNAILPNG-QTIFTG 125
SP+ VA G V L C GH + I + + +
Sbjct: 5 SPRNKVAVTGGKVTLSCQQTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKA 64
Query: 126 S-------TLQIPRITKEDRGAYYCVAQN----------GIGRGARRKIEVKVEFAPIVT 168
S +L + T Y+C + G G +++ P V+
Sbjct: 65 SRPSQEQFSLILELATPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVS 124
Query: 169 VQSTRIGQALHHDM-DLDCHIEA-YPHPI-LYWAKDGEIV 205
+ + + L C +P + L W +G+ V
Sbjct: 125 LFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEV 164
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor,
immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 33.0 bits (75), Expect = 0.026
Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 28/104 (26%)
Query: 88 EGQSVQLECHAEG--HPIPTISWRRENNAILPNGQTIFTGS------------------- 126
GQ++ + C W +E +A++ + + +
Sbjct: 24 AGQTLTVRCQYPPTGSLYEKKGWCKEASALVCI-RLVTSSKPRTMAWTSRFTIWDDPDAG 82
Query: 127 --TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVT 168
T+ + + +ED G Y+C I R + + V F +V+
Sbjct: 83 FFTVTMTDLREEDSGHYWC----RIYRPSDNSVSKSVRFYLVVS 122
>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system;
3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Length = 229
Score = 33.8 bits (78), Expect = 0.027
Identities = 21/100 (21%), Positives = 32/100 (32%), Gaps = 23/100 (23%)
Query: 75 VILNNSPQLSVAKEGQSVQLECHAEGHPIPT--ISWRR------------ENNAILPNGQ 120
++ + V G L C +G I I+W R E + P +
Sbjct: 3 ELVPEHQTVPV-SIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFK 61
Query: 121 TIFTGS--------TLQIPRITKEDRGAYYCVAQNGIGRG 152
F G L+I ++ D G+YYC G
Sbjct: 62 DNFQGDIDIAKNLAVLKILAPSERDEGSYYCACDTLGMGG 101
>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V,
NKP44-like, natural killer cell IG-like receptor,
inhibitory receptor; 1.70A {Homo sapiens}
Length = 110
Score = 32.5 bits (74), Expect = 0.032
Identities = 20/99 (20%), Positives = 32/99 (32%), Gaps = 21/99 (21%)
Query: 88 EGQSVQLECH-AEGHPIPTISWRRENNAILP------NGQTIFTGS-------------T 127
G S+ ++C + H W R L G T
Sbjct: 10 VGGSLSVQCPYEKEHRTLNKYWCRPPQIFLCDKIVETKGSAGKRNGRVSIRDSPANLSFT 69
Query: 128 LQIPRITKEDRGAYYC-VAQNGIGRGARRKIEVKVEFAP 165
+ + +T+ED G Y+C V + +EV+V P
Sbjct: 70 VTLENLTEEDAGTYWCGVDTPWLQDFHDPVVEVEVSVFP 108
>1smo_A Triggering receptor expressed on myeloid cells 1; activating
receptors, TREM-1, innate immune system receptor,
system; HET: TLA; 1.47A {Homo sapiens} SCOP: b.1.1.1
Length = 119
Score = 32.5 bits (74), Expect = 0.034
Identities = 15/116 (12%), Positives = 35/116 (30%), Gaps = 35/116 (30%)
Query: 85 VAKEGQSVQLECHAEGHPIPT--ISWRRENNAILP------------------------- 117
KEGQ++ ++C + +W+ + +P
Sbjct: 10 ELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILED 69
Query: 118 -NGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQST 172
+ + +++ + ED G Y C I + + + +VT +
Sbjct: 70 YHDHGLLR---VRMVNLQVEDSGLYQC----VIYQPPKEPHMLFDRIRLVVTKGFS 118
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule,
IGV, immunoglobulin variable, IGC, immunoglobulin
constant, signaling protein; 2.04A {Homo sapiens}
Length = 111
Score = 32.6 bits (74), Expect = 0.034
Identities = 15/94 (15%), Positives = 26/94 (27%), Gaps = 28/94 (29%)
Query: 71 DTPPVILNNSPQLSVAKEGQSVQLECH-AEGHPIPTISWRRENNAIL-----PNGQTIFT 124
D+ +N G+SV + E + I+W + + + T
Sbjct: 3 DSEIFTVN-------GILGESVTFPVNIQEPRQVKIIAWTSKTSVAYVTPGDSETAPVVT 55
Query: 125 GS---------------TLQIPRITKEDRGAYYC 143
+ L I + ED G Y
Sbjct: 56 VTHRNYYERIHALGPNYNLVISDLRMEDAGDYKA 89
>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer,
SCFV, variable domain, immune system; 2.60A {Mus
musculus} SCOP: b.1.1.1 b.1.1.1
Length = 240
Score = 33.5 bits (77), Expect = 0.035
Identities = 17/91 (18%), Positives = 29/91 (31%), Gaps = 22/91 (24%)
Query: 75 VILNNSPQLSVAKEGQSVQLECHA--EGHPIPT--ISWRRE------------NNAILPN 118
++L SP GQ + C A + W ++ + +
Sbjct: 2 IVLTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESG 61
Query: 119 GQTIFTGS------TLQIPRITKEDRGAYYC 143
F+G+ TL I + +D YYC
Sbjct: 62 IPVRFSGTGSRTDFTLIIDPVEADDVATYYC 92
Score = 29.2 bits (66), Expect = 0.80
Identities = 22/84 (26%), Positives = 29/84 (34%), Gaps = 27/84 (32%)
Query: 87 KEGQSVQLECHAEGHPIPT--ISWRREN--------NAILPNGQ--------------TI 122
+ G SV+L C A G I + W ++ I P T
Sbjct: 132 EPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITA 191
Query: 123 FTGST---LQIPRITKEDRGAYYC 143
T S LQ+ +T ED YYC
Sbjct: 192 DTSSNTAYLQLTSLTSEDTAVYYC 215
>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120,
broadly neutralizing antibody, 3B3 single chain variable
fragment, immune system; 2.50A {Homo sapiens}
Length = 256
Score = 33.5 bits (77), Expect = 0.036
Identities = 22/107 (20%), Positives = 35/107 (32%), Gaps = 21/107 (19%)
Query: 75 VILNNSPQLSVAKEGQSVQLECHAEGHPIPT-ISWRRE-----------NNAILPNG-QT 121
++L +P G+ C + ++W + + +G
Sbjct: 150 IVLTQAPGTLSLSPGERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISD 209
Query: 122 IFTGS------TLQIPRITKEDRGAYYCVAQNGIGR--GARRKIEVK 160
F+GS TL I R+ ED YYC G K+E K
Sbjct: 210 RFSGSGSGTDFTLTITRVEPEDFALYYCQVYGASSYTFGQGTKLERK 256
>1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D 3kps_D
3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A
Length = 206
Score = 33.4 bits (76), Expect = 0.037
Identities = 19/95 (20%), Positives = 27/95 (28%), Gaps = 19/95 (20%)
Query: 80 SPQLSVAKEGQSVQLECHAEG-HPIPTISWRR------------ENNAILPNGQTIFTG- 125
P + E + V L C+ I W R + + N
Sbjct: 5 QPNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIA 64
Query: 126 -----STLQIPRITKEDRGAYYCVAQNGIGRGARR 155
STL + R T D YYC+ G +
Sbjct: 65 EDRKSSTLILHRATLRDAAVYYCILPLAGGTSYGK 99
>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody,
domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP:
b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H
Length = 256
Score = 33.5 bits (77), Expect = 0.039
Identities = 22/111 (19%), Positives = 38/111 (34%), Gaps = 25/111 (22%)
Query: 75 VILNNSPQLSVAKEGQSVQLECHAEGHPIPT-----ISWRR------------ENNAILP 117
+ L +P G + C + + + + W + +
Sbjct: 122 IELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFS 181
Query: 118 NGQTIFTGS------TLQIPRITKEDRGAYYCVAQNGIGR--GARRKIEVK 160
F+GS TL+I R+ ED G YYC + + G K+E+K
Sbjct: 182 GVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIK 232
>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET:
NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G*
3b9k_A* 2atp_A* 2arj_R
Length = 128
Score = 32.2 bits (73), Expect = 0.048
Identities = 17/98 (17%), Positives = 29/98 (29%), Gaps = 29/98 (29%)
Query: 80 SPQLSVAKEGQSVQLECHAEGHPIPTISW-----------------------RRENNAIL 116
P+ A+ GQ V L C G SW + + L
Sbjct: 10 FPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKL 69
Query: 117 PNGQTIFTGS------TLQIPRITKEDRGAYYCVAQNG 148
+ + L + + +KE+ G Y+C +
Sbjct: 70 NSSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVISN 107
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 32.2 bits (73), Expect = 0.050
Identities = 14/108 (12%), Positives = 32/108 (29%), Gaps = 25/108 (23%)
Query: 80 SPQLSVAKEGQSVQLECH---AEGHPIPTISWRRENNA------ILPNGQTIFTGS---- 126
+P+ V+++C G+ + W + + + + +
Sbjct: 7 TPESVTGTWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKYRG 66
Query: 127 ------------TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE 162
+LQI + +DR Y C G + + +E
Sbjct: 67 RLKVSHKVPGDVSLQINTLQMDDRNHYTCEVTWQTPDGNQVIRDKIIE 114
>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen
complex, HIV inhibiting antibody; 1.89A {Mus musculus}
PDB: 1jp5_A
Length = 247
Score = 33.0 bits (76), Expect = 0.057
Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 23/92 (25%)
Query: 75 VILNNSPQLSVAKEGQSVQLECHAEGHPIPT-----ISWRRE-----------NNAILPN 118
+++ +P G + C + + + W + + +
Sbjct: 2 ILMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFS 61
Query: 119 G-QTIFTGS------TLQIPRITKEDRGAYYC 143
G F+GS TL+I R+ ED G YYC
Sbjct: 62 GVPDRFSGSGSGTDFTLKISRVEAEDLGIYYC 93
Score = 30.3 bits (69), Expect = 0.46
Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 28/96 (29%)
Query: 84 SVAKEGQSVQLECHAEGHPIPT--ISWRREN--------NAILPN-----------GQTI 122
+ K G++V++ C A + + W ++ I G+
Sbjct: 137 ELKKPGETVKISCKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFA 196
Query: 123 FTGST------LQIPRITKEDRGAYYCVAQNGIGRG 152
F+ T LQI + ED Y+C ++ G
Sbjct: 197 FSLDTSTSTAFLQINNLKNEDTATYFC-VRDRHDYG 231
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold,
diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Length = 238
Score = 32.8 bits (75), Expect = 0.058
Identities = 17/88 (19%), Positives = 26/88 (29%), Gaps = 23/88 (26%)
Query: 80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRR------------------ENNAILPNGQT 121
SP+ VA G V L C+ + W R +P+G
Sbjct: 6 SPRNKVAVTGGKVTLSCNQTN-NHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYK 64
Query: 122 IFTGS----TLQIPRITKEDRGAYYCVA 145
S +L + T Y+C +
Sbjct: 65 ASRPSQENFSLILELATPSQTSVYFCAS 92
Score = 32.8 bits (75), Expect = 0.060
Identities = 16/84 (19%), Positives = 25/84 (29%), Gaps = 20/84 (23%)
Query: 80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRREN-----------NAILPNGQT-IFTGS- 126
SPQ EG++ L C E W ++ ++ + FT
Sbjct: 133 SPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFF 192
Query: 127 -------TLQIPRITKEDRGAYYC 143
+L I D Y+C
Sbjct: 193 NKREKKLSLHIADSQPGDSATYFC 216
>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked
with A synthetic...; single-chain FV, monoclonal
antibody, immunoglobulin; 1.30A {Mus musculus} PDB:
3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*
Length = 250
Score = 33.0 bits (76), Expect = 0.062
Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 19/87 (21%)
Query: 75 VILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRE------------NNAILPNGQTI 122
V++ ++ LS G V + C A ++W ++ + + +
Sbjct: 6 VLIQSTSSLSA-SLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSR 64
Query: 123 FTGS------TLQIPRITKEDRGAYYC 143
F+GS +L I + +ED G Y+C
Sbjct: 65 FSGSGSGTDYSLTISNLEQEDIGTYFC 91
Score = 26.8 bits (60), Expect = 6.3
Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 27/84 (32%)
Query: 87 KEGQSVQLECHAEGHPIPT--ISWRREN--------NAILP-NGQTIF------------ 123
K G SV++ C G+ + ++W ++ I P +G T +
Sbjct: 144 KPGASVKISCKDSGYAFSSSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTA 203
Query: 124 --TGST--LQIPRITKEDRGAYYC 143
+ ST +Q+ +T D Y+C
Sbjct: 204 DKSSSTAYMQLSSLTSVDSAVYFC 227
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 31.7 bits (72), Expect = 0.062
Identities = 13/92 (14%), Positives = 23/92 (25%), Gaps = 27/92 (29%)
Query: 79 NSPQLSVAKEGQSVQLEC------HAEGHPIPTISWRRENNAILP--------------- 117
+SP+ G + + C T W + +
Sbjct: 5 SSPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRF 64
Query: 118 NGQTIFTGS------TLQIPRITKEDRGAYYC 143
G+ G+ L + + ED G Y
Sbjct: 65 RGRAELMGNMDHKVCNLLLKDLKPEDSGTYNF 96
>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system;
1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N
Length = 121
Score = 31.9 bits (73), Expect = 0.064
Identities = 28/129 (21%), Positives = 52/129 (40%), Gaps = 25/129 (19%)
Query: 68 AQVDTPPVILNNSPQLSVAKEGQSVQLECHAEG--HPIPTISWRREN------NAILPNG 119
A+VD P +++ + G+S+ + C + T W R+ +I G
Sbjct: 1 ARVDQTP------QRITK-ETGESLTINCVVRDSRCVLSTGYWYRKPPGSRNEESISDGG 53
Query: 120 ---QTIFTGS---TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAP--IVTVQS 171
+T+ GS +L+I +T +D G Y C ++ G + ++ +VTV +
Sbjct: 54 RYVETVNRGSKSFSLRINDLTVKDSGTYRCKPESRYGSYDAVCAALNDQYGGGTVVTVNA 113
Query: 172 TRIGQALHH 180
HH
Sbjct: 114 AA--HHHHH 120
>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain
FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus}
SCOP: b.1.1.1 b.1.1.1
Length = 282
Score = 32.7 bits (75), Expect = 0.066
Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 21/101 (20%)
Query: 80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRE-----------NNAILPNG-QTIFTGS- 126
SP + A G+ V + C A + + W ++ + + L +G F+GS
Sbjct: 168 SPAIMSASPGEKVTITCSA-SSSVSYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSG 226
Query: 127 -----TLQIPRITKEDRGAYYCVAQNGIGR--GARRKIEVK 160
+L I R+ ED YYC ++ GA K+E+K
Sbjct: 227 SGTSYSLTISRMEAEDAATYYCQQRSSYPLTFGAGTKLELK 267
>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system;
2.88A {Mus musculus}
Length = 291
Score = 32.7 bits (75), Expect = 0.071
Identities = 22/112 (19%), Positives = 37/112 (33%), Gaps = 26/112 (23%)
Query: 75 VILNNSPQLSVAKEGQSVQLECHAEGHPIPT------ISW------------RRENNAIL 116
++++ SP G+ V + C + + ++W +
Sbjct: 160 LVMSQSPSSLAVSAGEKVTMSCKSSQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRE 219
Query: 117 PNGQTIFTGS------TLQIPRITKEDRGAYYCVAQNGIGR--GARRKIEVK 160
FTGS TL I + ED YYC G+ K+E+K
Sbjct: 220 SGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYYHMYTFGSGTKLEIK 271
Score = 26.5 bits (59), Expect = 7.0
Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 27/86 (31%)
Query: 85 VAKEGQSVQLECHAEGHPIPT--ISWRREN--------NAILPNGQTI-----FTG---- 125
+ K G SV++ C A G+ + + W ++ I P F G
Sbjct: 33 LVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATL 92
Query: 126 ------ST--LQIPRITKEDRGAYYC 143
ST +++ +T ED YYC
Sbjct: 93 TSDKSSSTAYMELSSLTSEDSAVYYC 118
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor,
structural genomics, PSI, protein structure initiative;
2.10A {Mus musculus}
Length = 113
Score = 31.2 bits (71), Expect = 0.080
Identities = 18/110 (16%), Positives = 33/110 (30%), Gaps = 30/110 (27%)
Query: 81 PQLSVAKEGQSVQLECH-AEGHPIPTISWRRENNAILPNGQ---TIFTGS---------- 126
P+ +E S+ ++C G W + +P + T +
Sbjct: 8 PEEVSGQEQGSLTVQCRYTSGWKDYKKYWCQG----VPQRSCKTLVETDASEQLVKKNRV 63
Query: 127 -----------TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAP 165
T+ + + D G Y+C G G K+ V + P
Sbjct: 64 SIRDNQRDFIFTVTMEDLRMSDAGIYWCGITKG-GLDPMFKVTVNIGPVP 112
>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B,
CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin
protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB:
3kho_A*
Length = 133
Score = 31.5 bits (72), Expect = 0.087
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 12/74 (16%)
Query: 80 SPQLSVAKEGQSVQLECHAEGHPIPTISW--RRENNA--ILPNGQTIFTGS------TLQ 129
P+ + K V+ C+ ++W +R + L + + + TL
Sbjct: 23 HPRFAAKKRSSMVKFHCYTNHSGA--LTWFRKRGSQQPQELVSEEGRIVQTQNGSVYTLT 80
Query: 130 IPRITKEDRGAYYC 143
I I ED G Y+C
Sbjct: 81 IQNIQYEDNGIYFC 94
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor
complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 b.1.2.1 PDB: 1p9m_A
Length = 303
Score = 32.5 bits (73), Expect = 0.088
Identities = 14/106 (13%), Positives = 23/106 (21%), Gaps = 12/106 (11%)
Query: 69 QVDTPPVILNNSPQLSVAKEGQSVQLEC-------HAEGHPIPTISWRRENNAILPNGQT 121
+D I SP+ V + + C I W+ + I T
Sbjct: 2 LLDPCGYI---SPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYT 58
Query: 122 IFTGSTLQIPRIT-KEDRGAYYCVAQNGIGRGARRK-IEVKVEFAP 165
I + + C I + P
Sbjct: 59 IINRTASSVTFTDIASLNIQLTCNILTFGQLEQNVYGITIISGLPP 104
>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein,
T cell receptor delta, immune system; HET: NAG MAN FUC;
3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 230
Score = 32.2 bits (74), Expect = 0.089
Identities = 17/97 (17%), Positives = 29/97 (29%), Gaps = 27/97 (27%)
Query: 81 PQLSVAKE-GQSVQLECHAEGHPIPT--ISWRR----------------ENNAILPNGQT 121
P++S+++ ++ Q+ C + I W R + L
Sbjct: 7 PEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYK 66
Query: 122 IFTGS--------TLQIPRITKEDRGAYYCVAQNGIG 150
S L I + +ED YYC G
Sbjct: 67 KMEASKNPSASTSILTIYSLEEEDEAIYYCSYGEGSS 103
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane,
immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B*
3q5t_A
Length = 240
Score = 32.3 bits (73), Expect = 0.094
Identities = 25/177 (14%), Positives = 50/177 (28%), Gaps = 36/177 (20%)
Query: 80 SPQLSVAKEGQSVQLECHAE-GHPIPTISWRR-------------ENNAILPNGQTI--F 123
SP+ + ++G L C GH + W + G F
Sbjct: 8 SPRHIIKEKGGRSVLTCIPISGHS--NVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRF 65
Query: 124 TGS-------TLQIPRITKEDRGAYYCVAQNGI--------GRGARRKIEVKVEFAPIVT 168
+ + + + ED Y+C + G +++ P V+
Sbjct: 66 SVQQFDDYHSEMNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVS 125
Query: 169 VQSTRIGQALHHDM-DLDCHIEAY--PHPILYWAKDGEIVVNDEYHSISNFGTSEGT 222
+ + + L C + H L W +G+ V + + S +
Sbjct: 126 LFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYS 182
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 31.1 bits (70), Expect = 0.12
Identities = 13/113 (11%), Positives = 28/113 (24%), Gaps = 31/113 (27%)
Query: 80 SPQLSVAKEGQSVQLECH----AEGHPIPTISWRR--------------------ENNAI 115
+ + G V L C + +WR +
Sbjct: 5 TDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVG 64
Query: 116 LPNGQTIFTGS------TLQIPRITKEDRGAYYCVAQNGIGRGARRK-IEVKV 161
+ + G ++ I + D G + C +N + + + V
Sbjct: 65 TFKERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYV 117
>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like
domain, immunoglobulin-like, immune system receptor;
HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1
Length = 127
Score = 31.0 bits (70), Expect = 0.13
Identities = 13/93 (13%), Positives = 30/93 (32%), Gaps = 31/93 (33%)
Query: 80 SPQLSVAKEGQSVQLECHAEGHPIPT--ISWRRENNAILP-------------------- 117
+ + KEGQ++ ++C + +W+ + +P
Sbjct: 10 TEEKYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGR 69
Query: 118 ------NGQTIFTGSTLQIPRITKEDRGAYYCV 144
+ + +++ + ED G Y CV
Sbjct: 70 IILEDYHDHGLLR---VRMVNLQVEDSGLYQCV 99
>3ux9_B SCFV antibody; five helices, long loop connecting helix,
hydrophobic intera cytokine-immune system complex; 2.80A
{Homo sapiens}
Length = 256
Score = 31.8 bits (73), Expect = 0.13
Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 21/98 (21%)
Query: 75 VILNNSPQLSVAKEGQSVQLECHAEGHPIPT--ISWRRE-----------NNAILPNG-Q 120
++L P +S GQ V + C I + +SW ++ +N P+G
Sbjct: 4 IVLTQPPSVSG-APGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVP 62
Query: 121 TIFTGS------TLQIPRITKEDRGAYYCVAQNGIGRG 152
F+GS +L I + ED YYC ++
Sbjct: 63 DRFSGSKSGTSASLAITGLQSEDEADYYCQVRDNNENE 100
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus
musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Length = 218
Score = 31.5 bits (72), Expect = 0.14
Identities = 24/103 (23%), Positives = 35/103 (33%), Gaps = 28/103 (27%)
Query: 75 VILNNSPQLSVAKEGQSVQLECHAEG-HPIPTISW---------------RRENNAILPN 118
++L S S + G S +L C H TI W +++ + +
Sbjct: 2 LVLTQSSSASFSL-GASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGD 60
Query: 119 GQTI---FTGS------TLQIPRITKEDRGAYYCVAQNGIGRG 152
G I F+GS L I I ED Y C + I
Sbjct: 61 G--IPDRFSGSSSGADRYLSISNIQPEDEAIYICGVGDTIKEQ 101
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 30.7 bits (69), Expect = 0.15
Identities = 10/92 (10%), Positives = 22/92 (23%), Gaps = 16/92 (17%)
Query: 72 TPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGS----- 126
+ L + +G+ + I +W + N
Sbjct: 6 SGTARLVAGLEDVQVYDGEDAVFSL--DLSTIIQGTWFLNGEELKSNEPEGQVEPGALRY 63
Query: 127 ---------TLQIPRITKEDRGAYYCVAQNGI 149
L + + +D GA + G+
Sbjct: 64 RIEQKGLQHRLILHAVKHQDSGALVGFSCPGV 95
>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo
sapiens} PDB: 2nx5_D 4dzb_A
Length = 200
Score = 31.4 bits (71), Expect = 0.15
Identities = 15/93 (16%), Positives = 29/93 (31%), Gaps = 24/93 (25%)
Query: 81 PQLSVAKEGQSVQLECHAEGHPIPTISW-------------RRENNAILPNGQTIFTG-- 125
+++ EG VQ+ C + + W + + G+ F+
Sbjct: 7 TEMTAT-EGAIVQINCTYQTSGFNGLFWYQQHAGEAPTFLSYNVLDGLEEKGR--FSSFL 63
Query: 126 ------STLQIPRITKEDRGAYYCVAQNGIGRG 152
S L + + +D +Y C Q G
Sbjct: 64 SRSKGYSYLLLKELQMKDSASYLCAVQASGGSY 96
>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain,
variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 116
Score = 30.7 bits (70), Expect = 0.15
Identities = 20/101 (19%), Positives = 27/101 (26%), Gaps = 33/101 (32%)
Query: 80 SPQLSVAKEGQSVQLECHAEG-HPIPTISWRRENNAILPNGQTI---------------- 122
SP +VA G V L C + + P + W R P+
Sbjct: 7 SPDQTVA-SGSEVVLLCTYDTVYSNPDLFWYRI----RPDYSFQFVFYGDDSRSEGADFT 61
Query: 123 ---FTGS--------TLQIPRITKEDRGAYYCVAQNGIGRG 152
F+ L I + ED YYC
Sbjct: 62 QGRFSVKHILTQKAFHLVISPVRTEDSATYYCAFTLPPPTD 102
Score = 25.3 bits (56), Expect = 8.9
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 4/32 (12%)
Query: 20 TQLS---VAKEGQSVQLECHAEG-HPIPTISW 47
TQ S G V L C + + P + W
Sbjct: 4 TQSSPDQTVASGSEVVLLCTYDTVYSNPDLFW 35
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A
{Mus musculus}
Length = 270
Score = 31.5 bits (71), Expect = 0.15
Identities = 33/162 (20%), Positives = 54/162 (33%), Gaps = 38/162 (23%)
Query: 80 SPQLSVAKEGQSVQLECHAE-GHPIPTISWRR-------------ENNAILPNGQTI--- 122
+P+ V +GQ ++ C E GHP + W + +N +L
Sbjct: 33 TPRYLVKGQGQKAKMRCIPEKGHP--VVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKR 90
Query: 123 FTGS-------TLQIPRITKEDRGAYYCVAQNGIGR-------GARRKI--EVKVEFAPI 166
F+ +L+I D Y C + + G R + ++K F P
Sbjct: 91 FSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPE 150
Query: 167 VTVQSTRIGQALHHDMD-LDCHIEAY--PHPILYWAKDGEIV 205
V V + H L C + H L W +G+ V
Sbjct: 151 VAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEV 192
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine;
HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Length = 240
Score = 31.5 bits (71), Expect = 0.17
Identities = 29/183 (15%), Positives = 52/183 (28%), Gaps = 21/183 (11%)
Query: 58 HLAIPYTSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEG----HPIPTISWRRENN 113
H P +PE P V L ++ ++ C P +W +
Sbjct: 9 HTCPPCPAPELLGG-PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGV 67
Query: 114 AILPNGQTIFTG---------STLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEF- 163
+ S L + + Y C N K K +
Sbjct: 68 EVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQ 127
Query: 164 --APIVTVQSTRIGQALHHDMDLDCHIEA-YPHPI-LYWAKDGEIVVNDEYHSISNFGTS 219
P V + + + L C ++ YP I + W +G+ + Y + S
Sbjct: 128 PREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPE--NNYKATPPVLDS 185
Query: 220 EGT 222
+G+
Sbjct: 186 DGS 188
>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor,
immune system/receptor/complex, TCR, MHC,
immunodominance, FLU, complex; 1.40A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E
2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D*
3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E
3kxf_E 2cde_B ...
Length = 252
Score = 31.5 bits (71), Expect = 0.17
Identities = 33/158 (20%), Positives = 47/158 (29%), Gaps = 32/158 (20%)
Query: 80 SPQLSVAKEGQSVQLECHAE-------------GHPIPTISWRRENNAILPNGQTI-FTG 125
SP+ KEGQ+V L C G + I + + N ++
Sbjct: 9 SPKYLFRKEGQNVTLSCEQNLNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSV 68
Query: 126 S-------TLQIPRITKEDRGAYYC--------VAQNGIGRGARRKIEVKVEFAPIVTVQ 170
S L + K Y C G G ++K F P V V
Sbjct: 69 SREKKESFPLTVTSAQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVF 128
Query: 171 STRIGQALHHDM-DLDCHIEA-YPHPI-LYWAKDGEIV 205
+ H L C YP + L W +G+ V
Sbjct: 129 EPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEV 166
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.17
Identities = 6/29 (20%), Positives = 14/29 (48%), Gaps = 5/29 (17%)
Query: 48 RRNFKRL-GRLHLAIPYTSP----EAQVD 71
++ K+L L L ++P +A ++
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATME 47
Score = 26.5 bits (57), Expect = 6.8
Identities = 5/23 (21%), Positives = 15/23 (65%), Gaps = 5/23 (21%)
Query: 155 RKIE--VKV---EFAPIVTVQST 172
+K++ +K+ + AP + +++T
Sbjct: 23 KKLQASLKLYADDSAPALAIKAT 45
>2ziu_B Crossover junction endonuclease EME1; helix-hairpin-helix,
alternative splicing, DNA damage, DNA recombination,
DNA repair, hydrolase, magnesium; 2.70A {Homo sapiens}
PDB: 2ziw_B 2zix_B 2ziv_B
Length = 341
Score = 31.7 bits (71), Expect = 0.17
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 5 PESQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIP-TISWRRN 50
V PV+L + Q+++ C E +P +++WRR
Sbjct: 21 KHIIVVLDPVLLQMEGGGQLLGALQTMECRCVIEAQAVPCSVTWRRR 67
Score = 31.0 bits (69), Expect = 0.33
Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 66 PEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIP-TISWRR 110
V PV+L + Q+++ C E +P +++WRR
Sbjct: 21 KHIIVVLDPVLLQMEGGGQLLGALQTMECRCVIEAQAVPCSVTWRR 66
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune
system, antibody, ENA11His antibody, immunoglobulin
domain; 2.75A {Mus musculus}
Length = 254
Score = 31.7 bits (72), Expect = 0.17
Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 11/111 (9%)
Query: 123 FTGS------TLQIPRITKEDRGAYYCVAQNGIGR--GARRKIEVKVEFA-PIVTVQSTR 173
FTGS TL+I R+ ED G YYCV + GA K+E+K A P V++
Sbjct: 104 FTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVSIFPPS 163
Query: 174 IGQALHHDMDLDCHIEAYPHPILY--WAKDGEIVVNDEYHSISNFGTSEGT 222
Q + C + + + W DG N +S ++ + + T
Sbjct: 164 SEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDST 214
>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo
sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A*
3sdx_E* 2po6_C* 2cde_A 3to4_C*
Length = 210
Score = 31.2 bits (70), Expect = 0.18
Identities = 19/95 (20%), Positives = 29/95 (30%), Gaps = 20/95 (21%)
Query: 80 SPQLSVAKEGQSVQLECHAEGHPIPTISW--------------RRENNAILPNG------ 119
SPQ + EG++ L+C+ P + W + NG
Sbjct: 9 SPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATL 68
Query: 120 QTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGAR 154
S+L I D +Y CV + R
Sbjct: 69 DADTKQSSLHITASQLSDSASYICVVSDRGSTLGR 103
>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7,
immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB:
2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*
Length = 132
Score = 30.7 bits (69), Expect = 0.19
Identities = 15/100 (15%), Positives = 19/100 (19%), Gaps = 30/100 (30%)
Query: 79 NSPQLSVAKEGQSVQLEC-------HAEGHPIPTISWRRENNAILPNGQTIFTGS----- 126
+EG V + C W R N I
Sbjct: 11 TMQSSVTVQEGMCVHVRCSFSYPVDSDTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQ 70
Query: 127 ------------------TLQIPRITKEDRGAYYCVAQNG 148
TL I D G Y+ + G
Sbjct: 71 EETRDRFHLLGDPQTKNCTLSIRDARMSDAGRYFFRMEKG 110
>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human cytomegalovirus,
PP65, T cell receptor (TCR), immune response, public
response; 2.80A {Homo sapiens}
Length = 199
Score = 31.1 bits (70), Expect = 0.20
Identities = 19/101 (18%), Positives = 24/101 (23%), Gaps = 28/101 (27%)
Query: 80 SPQLSVAKEGQSVQLECHAEGHPIPTISW--------------RRENNAILPNGQTIFTG 125
SPQ +EG S C + W N G+ +
Sbjct: 6 SPQSLHVQEGDSTNFTCSFPSSNFYALHWYRWETAKSPEALFVMTLNGDEKKKGR--ISA 63
Query: 126 S--------TLQIPRITKEDRGAYYCVAQNG----IGRGAR 154
+ L I ED Y C G G G
Sbjct: 64 TLNTKEGYSYLYIKGSQPEDSATYLCARNTGNQFYFGTGTS 104
>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral
virus, virus-immune SYST complex; 30.00A {Mus musculus}
SCOP: i.6.1.1
Length = 438
Score = 31.4 bits (72), Expect = 0.21
Identities = 24/117 (20%), Positives = 33/117 (28%), Gaps = 32/117 (27%)
Query: 69 QVDTPPVILNNSPQL-----SVAKEGQSVQLECHAEGHPIPT--ISWRREN--------N 113
+ L + K G S++L C A G +SW R+
Sbjct: 208 PIVKSFNRNECEVMLVESGGGLVKPGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLEWVA 267
Query: 114 AILPNGQTI---------FTGS--------TLQIPRITKEDRGAYYCVAQNGIGRGA 153
I G FT S LQ+ + D YYCV + G
Sbjct: 268 TISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRSADTAMYYCVRREDGGDEG 324
Score = 29.1 bits (66), Expect = 1.4
Identities = 17/85 (20%), Positives = 28/85 (32%), Gaps = 23/85 (27%)
Query: 81 PQLSVAKEGQSVQLECHAEGHPIPT----ISWRREN--------NAILPNGQTI----FT 124
L+V GQ + C A + + W ++ N ++ F+
Sbjct: 9 ASLAV-SLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFS 67
Query: 125 GST------LQIPRITKEDRGAYYC 143
GS L I + +D YYC
Sbjct: 68 GSGSRTDFTLTIDPVEADDVATYYC 92
>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2
Length = 185
Score = 31.0 bits (70), Expect = 0.22
Identities = 17/101 (16%), Positives = 29/101 (28%), Gaps = 24/101 (23%)
Query: 81 PQLSVAKEGQSVQLECHAEGHPIPTISW--------------------RRENNAILPNGQ 120
L+V EG++ L C E W ++E+
Sbjct: 8 QSLTVW-EGETAILNCSYEDSTFDYFPWYHQFPGESPALLIAIRPVSNKKEDGRFTIFFN 66
Query: 121 TIFTGSTLQIPRITKEDRGAYYCVAQNGI---GRGARRKIE 158
+L I D Y+C A + G G + ++
Sbjct: 67 KREKKFSLHIADSQPGDSATYFCAASDNRIFFGDGTQLVVK 107
>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_C 4elk_A
4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D 3qfj_D 1qsf_D
1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D 2gj6_D 3utp_D*
3uts_D 1qrn_D 3hg1_D 3rdt_A ...
Length = 208
Score = 30.8 bits (69), Expect = 0.28
Identities = 14/98 (14%), Positives = 20/98 (20%), Gaps = 27/98 (27%)
Query: 80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF---------------- 123
SP+ EG L C + W R++
Sbjct: 8 SPESLSVPEGGMASLNCTSSDRNFQYFWWYRQH----SGEGPKALMSIFSDGDKKEGRFT 63
Query: 124 -------TGSTLQIPRITKEDRGAYYCVAQNGIGRGAR 154
+L I D Y+C A
Sbjct: 64 AHLNKASLHVSLHIRDSQPSDSALYFCAASEQNNYAQG 101
>3kg5_A B-cell antigen receptor complex-associated protei chain; CD79B,
IG-beta, BCR, immunoglobulin domain, protein binding;
3.20A {Homo sapiens}
Length = 134
Score = 30.0 bits (68), Expect = 0.28
Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 11/71 (15%)
Query: 84 SV-AKEGQSVQLECHAEGHPIPTISWRRENN----AILPNGQTIFTGS------TLQIPR 132
+ K G +V++ C+ ++ L + S TL I
Sbjct: 27 FIARKRGFTVKMHCYMNSASGNVSWLWKQEMDENPQQLKLEKGRMEESQNESLATLTIQG 86
Query: 133 ITKEDRGAYYC 143
I ED G Y+C
Sbjct: 87 IRFEDNGIYFC 97
>1oga_D T-cell receptor alpha chain V region, beta-2-microglobulin; immune
system/receptor, immune system/receptor/complex, TCR,
MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.2 PDB: 2xna_A 2xn9_A 2vlm_D 2vlk_D
2vlj_D 2vlr_D 2cdf_A 2wbj_C* 3qdm_D 3qeq_D
Length = 215
Score = 30.7 bits (69), Expect = 0.30
Identities = 20/104 (19%), Positives = 33/104 (31%), Gaps = 24/104 (23%)
Query: 80 SPQLSVAKEGQSVQLECHAEGHPIPTISW--------------RRENNAILPNGQTIFTG 125
SPQ +EG+++ + C++ ++ W + + F
Sbjct: 7 SPQFLSIQEGENLTVYCNSSS-VFSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQF 65
Query: 126 ------STLQIPRITKEDRGAYYCVAQNGIGR---GARRKIEVK 160
S+L I D G Y C G G K+ VK
Sbjct: 66 GDARKDSSLHITAAQPGDTGLYLCAGAGSQGNLIFGKGTKLSVK 109
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B
4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B
3qjh_B 3qiw_D* 3qiu_D
Length = 245
Score = 30.8 bits (69), Expect = 0.32
Identities = 32/162 (19%), Positives = 47/162 (29%), Gaps = 38/162 (23%)
Query: 80 SPQLSVAKEGQSVQLECHA-EGHPIPTISWRR-------------ENNAILPNGQTI--- 122
P + GQ V L C H W + N ++ +
Sbjct: 8 IPSHQIIDMGQMVTLNCDPVSNHL--YFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQ 65
Query: 123 FTGS-------TLQIPRITKEDRGAYYCVAQNGI---------GRGARRKIEVKVEFAPI 166
F+ TL+I ED Y+C + G ++K F P
Sbjct: 66 FSVERPDGSYFTLKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPE 125
Query: 167 VTVQSTRIGQALHHDM-DLDCHIEA-YPHPI-LYWAKDGEIV 205
V V + H L C YP + L W +G+ V
Sbjct: 126 VAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEV 167
>1flt_X FLT-1, VGR1, FMS-like tyrosine kinase 1; complex (growth
factor-transferase), FLT-1 receptor, cystine
glycoprotein; 1.70A {Homo sapiens} SCOP: b.1.1.4 PDB:
1qsv_A 1qsz_A 1qty_X 2xac_C 1rv6_X*
Length = 95
Score = 29.3 bits (65), Expect = 0.32
Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 2/72 (2%)
Query: 79 NSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGST--LQIPRITKE 136
P++ EG+ + + C I + + ++P+G+ I S I T +
Sbjct: 10 EIPEIIHMTEGRELVIPCRVTSPNITVTLKKFPLDTLIPDGKRIIWDSRKGFIISNATYK 69
Query: 137 DRGAYYCVAQNG 148
+ G C A
Sbjct: 70 EIGLLTCEATVN 81
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin,
glycosylation, immune system; HET: NAG FUC MAN GAL;
2.13A {Mus musculus}
Length = 218
Score = 30.3 bits (68), Expect = 0.35
Identities = 28/159 (17%), Positives = 44/159 (27%), Gaps = 19/159 (11%)
Query: 66 PEAQVDTPP-VILNNSPQLSVAKEGQSVQLECHAEG----HPIPTISWRRENNAILPNGQ 120
P ++ P V + V + ++ C P ISW N +
Sbjct: 2 PAPNLEGGPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQT 61
Query: 121 TIFTG---------STLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEF---APIVT 168
STL I + C N + K++ AP V
Sbjct: 62 QTHREDYNSTIRVVSTLPIQHQDWMSGKEFKCKVNNKDLPSPIERTISKIKGLVRAPQVY 121
Query: 169 VQSTRIGQALHHDMDLDCHIEA-YPHPI-LYWAKDGEIV 205
+ Q D+ L C + P I + W +G
Sbjct: 122 ILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTSNGHTE 160
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system;
1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 117
Score = 29.5 bits (66), Expect = 0.37
Identities = 18/104 (17%), Positives = 35/104 (33%), Gaps = 24/104 (23%)
Query: 81 PQLSVAKEGQSVQLECHAE---GHPIPTISWRRE--------------NNAILPNGQTIF 123
P+ + EG SV + C+ + W R+ + G+
Sbjct: 7 PEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANL 66
Query: 124 TGS------TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161
T + I +++++D G Y C RG + ++V
Sbjct: 67 TNFPENGTFVVNIAQLSQDDSGRYKCGLGIN-SRGLSFDVSLEV 109
>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate
immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus
musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C*
3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C*
3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C*
3sdc_C* ...
Length = 229
Score = 30.1 bits (67), Expect = 0.45
Identities = 19/89 (21%), Positives = 30/89 (33%), Gaps = 20/89 (22%)
Query: 80 SPQLSVAKEGQSVQLECHAEGHPIPTISW--------------RRENNAILPNG------ 119
SPQ V ++G++ L+C+ P + W + NG
Sbjct: 7 SPQSLVVRQGENCVLQCNYSVTPDNHLRWYKQDTGKGLVLLTVLVDQKDKTSNGRYSATL 66
Query: 120 QTIFTGSTLQIPRITKEDRGAYYCVAQNG 148
STL I +D Y+CV +
Sbjct: 67 DKDAKHSTLHITATLLDDTATYFCVVGDR 95
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END
product-specific receptor; RAGE, AGER, scavenger
receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3cjj_A
2l7u_A* 2e5e_A
Length = 581
Score = 30.7 bits (69), Expect = 0.45
Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 4/101 (3%)
Query: 23 SVAKEGQSVQLECHAEGHPIPTISWRRNFKRLGRLHLAIPYTSPEAQVDTPPVILNNSPQ 82
SVA+ + L A G I + R G+ Y Q+ P I++++ +
Sbjct: 424 SVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKET-KSNYRVRVYQIPGKPEIVDSASE 482
Query: 83 LSVAKEGQSVQLECHAEG-HPIPTISWRRENNAILPNGQTI 122
L+ + C +EG +P T+SW + ++PN + +
Sbjct: 483 LTAGVPNKVGT--CVSEGSYPAGTLSWHLDGKPLVPNEKGV 521
>1dlf_L Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus
musculus} SCOP: b.1.1.1 PDB: 1wz1_L* 2dlf_L 1maj_A
1mak_A 1ktr_L 2cju_L* 2uud_K* 1dsf_L 3nn8_B 1n4x_L
1bfv_L* 1cfv_L* 2bfv_L* 1wt5_C
Length = 113
Score = 29.0 bits (66), Expect = 0.53
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 6/27 (22%)
Query: 123 FTGS------TLQIPRITKEDRGAYYC 143
F+GS TL+I R+ ED G Y+C
Sbjct: 67 FSGSGSGTDFTLKISRVEAEDLGVYFC 93
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 28.7 bits (63), Expect = 0.82
Identities = 20/131 (15%), Positives = 31/131 (23%), Gaps = 31/131 (23%)
Query: 25 AKEGQSVQLECH---AEGHPIPTISWRRNFKRLGRLHLAIPYTSPEAQVDTPPVILNNSP 81
G +V+L C A P ISW + +V
Sbjct: 16 VHAGGTVELPCSYQLANDTQPPVISWLKG-----------ASPDRSTKVFKGNYNWQGEG 64
Query: 82 QLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAY 141
V + A + N TL++ + +D G Y
Sbjct: 65 LGFVESDSYKESFG-------------DFLGRASVAN----LAAPTLRLTHVHPQDGGRY 107
Query: 142 YCVAQNGIGRG 152
+C R
Sbjct: 108 WCQVAQWSIRT 118
>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist
peptide T-cell vaccines, transmembrane, immunoglobulin
domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D
2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D
3mv9_D 3utt_D 2cdg_A
Length = 203
Score = 29.2 bits (65), Expect = 0.84
Identities = 16/95 (16%), Positives = 25/95 (26%), Gaps = 24/95 (25%)
Query: 80 SPQLSVAKEGQSVQLECHAEGHPIPTISW--------------RRENNAILPNGQTIFTG 125
P EG+++ L C I + W + + +G+
Sbjct: 6 IPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGR--LNA 63
Query: 126 --------STLQIPRITKEDRGAYYCVAQNGIGRG 152
STL I D Y C + G
Sbjct: 64 SLDKSSGRSTLYIAASQPGDSATYLCAVRPTSGGS 98
>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A
{Orectolobus maculatus} PDB: 2ywy_A
Length = 111
Score = 28.4 bits (64), Expect = 0.89
Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 22/91 (24%)
Query: 80 SPQLSVAKEGQSVQLECHAEGHPIPT--ISWRRENNAILP---NGQTI-----FTGS--- 126
+P+ + G+S+ ++C + H +W R N +TI + +
Sbjct: 6 TPRTITKETGESLTIKCVLKDHSCGLSSTTWYRT----QLGSTNEKTISIGGRYDETVDK 61
Query: 127 -----TLQIPRITKEDRGAYYCVAQNGIGRG 152
+L+I + ED G Y C A
Sbjct: 62 GSKSFSLRISDLRVEDSGTYKCQADYSPSCY 92
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 79
Score = 27.6 bits (61), Expect = 1.00
Identities = 10/62 (16%), Positives = 23/62 (37%), Gaps = 11/62 (17%)
Query: 82 QLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAY 141
++ + + V + C+ +I+W G + + L + + + RG Y
Sbjct: 2 KIPIEELEDRVFVNCNT------SITWVEGTV-----GTLLSDITRLDLGKRILDPRGIY 50
Query: 142 YC 143
C
Sbjct: 51 RC 52
>2jju_A Signal regulatory protein beta-1; immunoglobulin domain,
immunoglobulin superfamily, immune system,
transmembrane, paired receptor; 1.19A {Homo sapiens}
PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A
Length = 127
Score = 28.5 bits (64), Expect = 1.1
Identities = 22/81 (27%), Positives = 28/81 (34%), Gaps = 20/81 (24%)
Query: 83 LSVAKEGQSVQLECHA-EGHPIPTISWRRENNAI----------LPNGQTIFTGS----- 126
+SVA G+S L C P+ I W R A T +
Sbjct: 13 VSVAA-GESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKEGHFPRVTTVSELTKRNN 71
Query: 127 ---TLQIPRITKEDRGAYYCV 144
++ I IT D G YYCV
Sbjct: 72 LDFSISISNITPADAGTYYCV 92
>3tjh_C 42F3 alpha; IG MHC, antigen recognition, TCR-PMHC, membrane
receptor, IM system; 2.12A {Mus musculus} PDB: 3tpu_A
3tfk_C 1j8h_D* 1fyt_D* 3rev_A 1mwa_A* 1g6r_A* 1tcr_A*
2ckb_A 1zgl_M 3c5z_A 1i9e_A* 2oi9_B 2e7l_A 2icw_I 3e2h_B
3e3q_D
Length = 226
Score = 28.8 bits (64), Expect = 1.2
Identities = 15/93 (16%), Positives = 27/93 (29%), Gaps = 22/93 (23%)
Query: 81 PQLSVAKEGQSVQLECHAEGHPIPTISW-------------RRENNAILPNGQTIFTG-- 125
+++V+ EG S+QL C P + W + + + G F
Sbjct: 17 ARVTVS-EGASLQLRCKYSYSATPYLFWYVQYPRQGLQMLLKYYSGDPVVQGVNGFEAEF 75
Query: 126 ------STLQIPRITKEDRGAYYCVAQNGIGRG 152
L+ + D Y+C
Sbjct: 76 SKSDSSFHLRKASVHWSDSAVYFCAVSAKGTGS 108
>2ol3_A BM3.3 T-cell receptor alpha-chain; T cell receptor, class I MHC,
H-2KBM8, TCR-PMHC complex, IMM system; HET: NAG; 2.90A
{Mus musculus} SCOP: b.1.1.1
Length = 142
Score = 28.1 bits (63), Expect = 1.3
Identities = 17/99 (17%), Positives = 26/99 (26%), Gaps = 23/99 (23%)
Query: 79 NSPQLSVAKEGQSVQLEC----------------HAEGHPIPTISWRRENNAILPNG--- 119
+SV E +V ++C A G + I G
Sbjct: 6 TQTSISVM-EKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYS 64
Query: 120 ---QTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARR 155
Q + L I ED Y+C + G +
Sbjct: 65 LNFQKPKSSIGLIITATQIEDSAVYFCAMRGDYGGSGNK 103
>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized
SCFV), SCFV, monovalent antibo antibody engineering,
immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L
Length = 276
Score = 28.8 bits (65), Expect = 1.3
Identities = 24/96 (25%), Positives = 31/96 (32%), Gaps = 27/96 (28%)
Query: 85 VAKEGQSVQLECHAEGHPIPT--ISWRREN--------NAILPNGQTI---------FTG 125
+ + G S++L C A G I I W R+ I P G FT
Sbjct: 145 LVQPGGSLRLSCAASGFTISDYWIHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTI 204
Query: 126 ST--------LQIPRITKEDRGAYYCVAQNGIGRGA 153
S LQ+ + ED YYC A
Sbjct: 205 SADTSKNTAYLQMNSLRAEDTAVYYCARFVFFLPYA 240
Score = 27.6 bits (62), Expect = 3.2
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 6/27 (22%)
Query: 123 FTGS------TLQIPRITKEDRGAYYC 143
F+GS TL I + ED YYC
Sbjct: 73 FSGSGSGTDFTLTISSLQPEDFATYYC 99
>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A
Length = 117
Score = 27.7 bits (62), Expect = 1.5
Identities = 16/108 (14%), Positives = 27/108 (25%), Gaps = 27/108 (25%)
Query: 80 SPQLSVAKEGQSVQLECHAEGHPI-PTISWRRENNAILPNGQTIFTGS------------ 126
P EG + C ++W R + + Q F+
Sbjct: 5 YPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQI 64
Query: 127 ---------TLQIPRITKEDRGAYYCVAQNG-----IGRGARRKIEVK 160
+ I + D G Y C A + I ++ V
Sbjct: 65 IQLPNRHDFHMNILDTRRNDSGIYLCGAISLHPKLKIEESPGAELVVT 112
>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1;
beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus
musculus}
Length = 120
Score = 27.6 bits (62), Expect = 1.5
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 127 TLQIPRITKEDRGAYYCV 144
+++I +T ED G YYCV
Sbjct: 79 SIRISNVTPEDAGTYYCV 96
>1a64_A CD2; domain swapping, hinge loop, oligomer evolution; 2.00A {Rattus
norvegicus} SCOP: b.1.1.1 PDB: 1a7b_A 1cdc_B 1a6p_A
1t6w_A
Length = 97
Score = 27.3 bits (60), Expect = 1.6
Identities = 11/69 (15%), Positives = 25/69 (36%), Gaps = 10/69 (14%)
Query: 103 IPTISWRRENNAI--LPNGQ-------TIFTGSTLQIPRITKEDRGAYYCVAQNGIGRG- 152
I + W R + + I L+I +T++D G Y + G
Sbjct: 27 IDEVRWERGSTLVAEFKRKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRI 86
Query: 153 ARRKIEVKV 161
+ +++++
Sbjct: 87 LDKALDLRI 95
>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB,
TCR-PMHC complex, immune system; 2.50A {Mus musculus}
SCOP: b.1.1.1 PDB: 1nam_A*
Length = 116
Score = 27.6 bits (62), Expect = 1.7
Identities = 16/103 (15%), Positives = 30/103 (29%), Gaps = 31/103 (30%)
Query: 79 NSPQLSVAKEGQSVQLECHAE-GHPIPTISWRRENNAILPNGQTIF-------------- 123
+SV E +V ++C E + W ++ +G+ +F
Sbjct: 6 TQTSISVM-EKTTVTMDCVYETQDSSYFLFWYKQT----ASGEIVFLIRQDSYKKENATV 60
Query: 124 -----------TGSTLQIPRITKEDRGAYYCVAQNGIGRGARR 155
+ L I ED Y+C + G +
Sbjct: 61 GHYSLNFQKPKSSIGLIITATQIEDSAVYFCAMRGDYGGSGNK 103
>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA,
IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB:
3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A
Length = 257
Score = 28.4 bits (64), Expect = 2.0
Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 21/107 (19%)
Query: 75 VILNNSPQLSVAKEGQSVQLECHAEGHPIP-TISWRRE-----------NNAILPNG-QT 121
++L SP + A G+ V L C A + W ++ + + L +G
Sbjct: 142 IVLTQSPAIMSASPGEKVTLTCSASSSVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPA 201
Query: 122 IFTGST------LQIPRITKEDRGAYYCVAQNGIGR--GARRKIEVK 160
F+GS L I + ED +Y+C + G+ K+E+K
Sbjct: 202 RFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSFPFTFGSGTKLEIK 248
Score = 28.0 bits (63), Expect = 2.3
Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 26/85 (30%)
Query: 85 VAKEGQSVQLECHAEGHPIPT--ISWRREN--------NAILPNGQTI--------FTGS 126
+ K Q++ L C G + + SW R+ I G T + +
Sbjct: 19 LVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISIT 78
Query: 127 --------TLQIPRITKEDRGAYYC 143
LQ+ ++ ED YYC
Sbjct: 79 RDTSKNQVYLQLKSVSSEDTATYYC 103
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2,
alzheimer'S disease, immunotherapies, APP, immune
system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B*
1h3p_L
Length = 252
Score = 28.1 bits (63), Expect = 2.2
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 6/27 (22%)
Query: 123 FTGS------TLQIPRITKEDRGAYYC 143
F+GS TL+I R+ ED G YYC
Sbjct: 100 FSGSGSGTDFTLRISRVEAEDLGVYYC 126
>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4
protein; AB-ignar, AB-12Y-2, glycoprotein, membran
protease inhibitor; 2.05A {Orectolobus maculatus} PDB:
2z8w_C 2z8v_C 1ves_A 1ver_A
Length = 126
Score = 27.4 bits (61), Expect = 2.3
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Query: 121 TIFTGS---TLQIPRITKEDRGAYYC 143
T+ GS +L+I + ED G Y C
Sbjct: 58 TVNKGSKSFSLRISDLRVEDSGTYKC 83
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex,
immunoglobulin fold, immune receptor, membr immune
system; HET: NAG; 2.55A {Homo sapiens}
Length = 268
Score = 28.1 bits (62), Expect = 2.3
Identities = 25/121 (20%), Positives = 37/121 (30%), Gaps = 33/121 (27%)
Query: 80 SPQLSVAKEGQSVQLECHAE-GHPIPTISWRR-------------ENNAILPNGQTI--- 122
+P V ++G+ V+L C GH + W R + +
Sbjct: 32 TPSNKVTEKGKYVELRCDPISGH--TALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDR 89
Query: 123 FTGS-------TLQIPRITKEDRGAYYCVAQN-------GIGRGARRKIEVKVEFAPIVT 168
F TL+I R + D Y C G G ++K F P V
Sbjct: 90 FFAVRPEGSVSTLKIQRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVA 149
Query: 169 V 169
V
Sbjct: 150 V 150
>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2,
immune system; 2.10A {Orectolobus maculatus}
Length = 108
Score = 26.9 bits (60), Expect = 2.5
Identities = 21/100 (21%), Positives = 32/100 (32%), Gaps = 23/100 (23%)
Query: 68 AQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIP--TISWRRENNAILPNGQTI--- 122
A+VD P I G+S+ + C + +W R QTI
Sbjct: 1 ARVDQTPRIATKET-------GESLTINCVLRDTACALDSTNWYRTKLGSTKE-QTISIG 52
Query: 123 --FTGS--------TLQIPRITKEDRGAYYCVAQNGIGRG 152
++ + +L I + ED G Y C A
Sbjct: 53 GRYSETVDEGSNSASLTIRDLRVEDSGTYKCKAYRRCAFN 92
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG,
immune system; 2.94A {Cricetulus migratorius} PDB:
3mj9_L*
Length = 213
Score = 27.7 bits (62), Expect = 2.5
Identities = 28/117 (23%), Positives = 44/117 (37%), Gaps = 29/117 (24%)
Query: 80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRE-----------NNAILPNGQTI---FTG 125
P +SVA GQ + C + + W ++ + P+G I F+G
Sbjct: 7 PPLVSVAL-GQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSG--IPDHFSG 63
Query: 126 S------TLQIPRITKEDRGAYYCVAQNG------IGRGARRKIEVKVEFAPIVTVQ 170
S TL I + D YYC + +G G G + + + AP VT+
Sbjct: 64 SNSGNMATLTISKAQAGDEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLF 120
>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1,
CD172B antigen, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 136
Score = 27.2 bits (61), Expect = 2.5
Identities = 22/81 (27%), Positives = 28/81 (34%), Gaps = 20/81 (24%)
Query: 83 LSVAKEGQSVQLECHA-EGHPIPTISWRRENNA----------ILPNGQTIFTGS----- 126
+SVA G+S L C P+ I W R A T +
Sbjct: 18 VSVAA-GESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKEGHFPRVTTVSELTKRNN 76
Query: 127 ---TLQIPRITKEDRGAYYCV 144
++ I IT D G YYCV
Sbjct: 77 LDFSISISNITPADAGTYYCV 97
>3rgv_A YAE62 TCR A chain; TCR, MHC, MHC class I, immune system; 2.90A {Mus
musculus} PDB: 3c60_A
Length = 200
Score = 27.7 bits (61), Expect = 2.7
Identities = 21/114 (18%), Positives = 34/114 (29%), Gaps = 31/114 (27%)
Query: 69 QVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISW---------------RRENN 113
V Q++++ E + + C PT+ W NN
Sbjct: 2 SVTQMQ------GQVTLS-ENDFLFINCTYSTTGYPTLFWYVQYSGEGPQLLLQVTTANN 54
Query: 114 AILPNGQTIF-----TGSTLQIPRITKEDRGAYYCVAQNGI----GRGARRKIE 158
G T LQ + + D YYC A +G G G + ++
Sbjct: 55 KGSSRGFEATYDKGTTSFHLQKTSVQEIDSAVYYCAANSGTYQRFGTGTKLQVV 108
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera
phosphorylation, transmembrane, tyrosine-protein kinase,
glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB:
2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Length = 536
Score = 27.8 bits (61), Expect = 3.3
Identities = 10/109 (9%), Positives = 26/109 (23%), Gaps = 8/109 (7%)
Query: 74 PVILNNSPQLSVAKEGQSVQL--ECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIP 131
P++ A +G+ + +C + + + + +
Sbjct: 241 VPPGGEEPRMHCAVDGEWLVPIGQCLCQAGYEKVEDACQACSPGFFKFEASESPCLECPE 300
Query: 132 RITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAP------IVTVQSTRI 174
GA C + G R + + P ++
Sbjct: 301 HTLPSPEGATSCECEEGFFRAPQDPASMPCTRPPSAPHYLTAVGMGAKV 349
>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand
complex, immunoglobulin-like sandwich, T cell, B cell,
programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1
Length = 134
Score = 27.1 bits (60), Expect = 3.4
Identities = 12/108 (11%), Positives = 24/108 (22%), Gaps = 27/108 (25%)
Query: 80 SPQLSVAKEGQSVQLECHAE----------------GHPIPTISWRRENNAILPNGQTIF 123
P EG + C ++ + + + +
Sbjct: 15 YPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQI 74
Query: 124 TGS------TLQIPRITKEDRGAYYCVAQNG-----IGRGARRKIEVK 160
+ I + D G Y C A + I ++ V
Sbjct: 75 IQLPNRHDFHMNILDTRRNDSGIYLCGAISLHPKAKIEESPGAELVVT 122
>3nl4_H Antigen binding fragment,immunoglobulin IGG - HEA; FAB, rabbit,
conformation-specific, amyloid, immune system; 1.54A
{Oryctolagus cuniculus}
Length = 215
Score = 27.5 bits (62), Expect = 3.6
Identities = 20/84 (23%), Positives = 27/84 (32%), Gaps = 24/84 (28%)
Query: 85 VAKEGQSVQLECHAEGHPIPT--ISWRREN--------NAILPNGQTI--------FTGS 126
+ G + L C G + T + W R+ I G FT S
Sbjct: 10 LVTPGTPLTLACTVSGFSLNTYSMFWVRQAPGKGLQWIGIISNFGVIYYATWAKGRFTIS 69
Query: 127 T------LQIPRITKEDRGAYYCV 144
L+I T ED Y+CV
Sbjct: 70 KTSTTVDLKITSPTTEDTATYFCV 93
>1fgj_A Hydroxylamine oxidoreductase; nitrification; HET: HEM HEC; 2.80A
{Nitrosomonas europaea} SCOP: a.138.1.3
Length = 546
Score = 27.9 bits (60), Expect = 3.6
Identities = 14/168 (8%), Positives = 37/168 (22%), Gaps = 6/168 (3%)
Query: 33 LECHAEGHPIPTISWR-----RNFKRLGRLHLAIPYTSPEAQVDTPPVILNNSPQLSVAK 87
+ECH++ P+ +W+ K Y + + +
Sbjct: 80 VECHSDETPVWVRAWKRSTHANLDKIRNLKSDDPLYYKKGKLEEVENNLRSMGKLGEKET 139
Query: 88 EGQSVQLECHAEGHPIPTISWRRENNAILPNG-QTIFTGSTLQIPRITKEDRGAYYCVAQ 146
+ ++CH + + ++ + T +
Sbjct: 140 LKEVGCIDCHVDVNKKDKADHTKDIRMPTADTCGTCHLREFAERESERDTMVWPNGQWPA 199
Query: 147 NGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHP 194
++ + + G + H C H
Sbjct: 200 GRPSHALDYTANIETTVWATMPQREVAEGCTMCHTNQNKCDNCHTRHE 247
>2w0c_L Protein 2; virus, member of PRD1-adeno viral lineage,
membrane-containing bacteriophage, virus virion,
membrane; 7.00A {Pseudoalteromonas phage PM2}
Length = 335
Score = 27.8 bits (61), Expect = 3.7
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 197 YWAKDGEIVVNDEYHSISNFGTSEGTTGSLQCKVP 231
YW D EI V EY + + + +EG T VP
Sbjct: 161 YWVSDEEIRVFKEYSARAKYAQNEGRTALEANNVP 195
>2vve_A Spike protein P1; viral stem-receptor binding domain, viral
protein; 1.77A {Pseudoalteromonas phage PM2} PDB: 2vvd_A
Length = 254
Score = 27.4 bits (60), Expect = 4.2
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 197 YWAKDGEIVVNDEYHSISNFGTSEGTTGSLQCKVP 231
YW D EI V EY + + + +EG T VP
Sbjct: 80 YWVSDEEIRVFKEYSARAKYAQNEGRTALEANNVP 114
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 27.4 bits (60), Expect = 4.4
Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 8/74 (10%)
Query: 96 CHAEGHPIPT---ISWRRENNAILPNGQTI----FTGSTLQIPRITKEDRGAYYCVAQNG 148
C A G P+PT ++ + + +L F+ + I RI D G + C
Sbjct: 348 CKASGWPLPTNEEMTLVKPDGTVLHPKDFNHTDHFSVAIFTIHRILPPDSGVWVCSVNTV 407
Query: 149 IGR-GARRKIEVKV 161
G I VKV
Sbjct: 408 AGMVEKPFNISVKV 421
>3nn8_A Engineered SCFV, heavy chain; beta barrel, antibody fragment,
immunoglobulin, immune syste; 3.10A {Mus musculus}
Length = 122
Score = 26.3 bits (59), Expect = 4.7
Identities = 19/88 (21%), Positives = 28/88 (31%), Gaps = 30/88 (34%)
Query: 85 VAKEGQSVQLECHAEGHPIPTISWRREN-------------NAILPNGQTI----FTG-- 125
K G SV++ C A G+ + + S N I +
Sbjct: 11 DVKPGASVKISCKASGYSL-STSGMGVNWVKQSPGKGLEWLAHIYWDDDKRYNPSLKSRA 69
Query: 126 --------ST--LQIPRITKEDRGAYYC 143
ST L++ +T ED YYC
Sbjct: 70 TLTVDKTSSTVYLELRSLTSEDSSVYYC 97
>2zzj_A Glucuronan lyase A; beta-jelly roll; HET: CIT; 1.80A {Trichoderma
reesei}
Length = 238
Score = 27.0 bits (59), Expect = 4.8
Identities = 6/54 (11%), Positives = 15/54 (27%)
Query: 170 QSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTT 223
QS I Q + + C + + + W ++ ++
Sbjct: 85 QSYNIAQFIANRPGAGCGGDDWMPSTMIWIQNNQLYSRYVNGHYRQPNCGRNIV 138
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1
neutralizing antibody, GP120, immune system; HET: PCA
MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L*
2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A*
1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A
1mcl_A* 1mcn_A* 1mcq_A 1mcr_A ...
Length = 211
Score = 26.6 bits (59), Expect = 5.4
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 11/59 (18%)
Query: 123 FTGS------TLQIPRITKEDRGAYYCVAQNG-----IGRGARRKIEVKVEFAPIVTVQ 170
F+GS +L + + +D YYC + G G G + + + + AP VT+
Sbjct: 59 FSGSKSGNTASLTVSGLQTDDEAVYYCGSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLF 117
>3taw_A Hypothetical glycoside hydrolase; 5-bladed beta-propeller,
structural genomics, joint center F structural genomics,
JCSG; HET: MSE; 1.70A {Parabacteroides distasonis} PDB:
3r67_A*
Length = 356
Score = 27.0 bits (59), Expect = 5.8
Identities = 9/53 (16%), Positives = 15/53 (28%), Gaps = 4/53 (7%)
Query: 106 ISWRRENNAIL----PNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGAR 154
I + R+ N + PRI + G Y + + R
Sbjct: 92 IHFERDTKPAFYPAKDNQAENECPGGTEDPRIAMTEDGTYVLLYTQWNRKVPR 144
>1fo0_B Protein (BM3.3 T cell receptor beta-chain); class I MHC, H-2KB,
TCR-PMHC complex, immune system; 2.50A {Mus musculus}
SCOP: b.1.1.1 PDB: 1nam_B* 2ol3_B* 1kb5_B 1kj2_B*
Length = 112
Score = 25.7 bits (57), Expect = 6.3
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 80 SPQLSVAKEGQSVQLECHAE--GHPIPTISW 108
+P+ + GQ+V L C + + P +SW
Sbjct: 7 NPRWRLVPRGQAVNLRCILKNSQY--PWMSW 35
>3rrq_A Protein PD-1, programmed cell death protein 1; programmed death-1,
costimulatory, immune system; 2.10A {Homo sapiens}
Length = 129
Score = 26.1 bits (58), Expect = 7.0
Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 124 TGSTLQIPRITKEDRGAYYCVAQNGIGR---GARRKIEVKV 161
+ + R + D G Y C A + + + E++V
Sbjct: 73 RDFHMSVVRARRNDSGTYLCGAISLAPKLQIKESLRAELRV 113
>3qjh_A 5C.C7 alpha chain; immunoglobulin domain, T cell receptor, immune
system; 1.90A {Mus musculus} PDB: 3qiu_C* 3qiw_C* 3qjf_A
3qib_C 2ial_A 2iam_C 2ian_D 3rug_E* 3axl_A
Length = 205
Score = 26.2 bits (57), Expect = 7.7
Identities = 20/89 (22%), Positives = 27/89 (30%), Gaps = 17/89 (19%)
Query: 80 SPQLSVAKEGQSVQLEC--------------HAEGHP---IPTISWRRENNAILPNGQTI 122
SP EG L C ++ G S +EN + +
Sbjct: 9 SPSALSLHEGTGSALRCNFTTTMRAVQWFRKNSRGSLINLFYLASGTKENGRLKSAFDSK 68
Query: 123 FTGSTLQIPRITKEDRGAYYCVAQNGIGR 151
STL I ED G Y+C A+
Sbjct: 69 ERYSTLHIRDAQLEDSGTYFCAAEASNTN 97
>3r8b_B G5-8, enterotoxin type B; immunoglobulin-like, OB-fold,
toxin-immune system complex; 2.95A {Rattus norvegicus}
Length = 125
Score = 25.6 bits (57), Expect = 7.8
Identities = 16/89 (17%), Positives = 26/89 (29%), Gaps = 28/89 (31%)
Query: 80 SPQLSVAKEGQSVQLECHA-EGHP-----------------IPTISWRRENNAILPNGQT 121
SP+ VA G+ V L C + + R +P+G
Sbjct: 11 SPRNKVAVTGEKVTLSCKQTNSYFNNMYWYRQDTGHELRLIFMSHGIRNVEKGDIPDG-- 68
Query: 122 IFTGS-------TLQIPRITKEDRGAYYC 143
+ S +L + T Y+C
Sbjct: 69 -YKASRPSQENFSLILELATPSQTSVYFC 96
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator,
signaling protein; 2.00A {Mycobacterium tuberculosis}
SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Length = 230
Score = 26.3 bits (58), Expect = 7.9
Identities = 11/85 (12%), Positives = 23/85 (27%), Gaps = 11/85 (12%)
Query: 100 GHPIPTISWRRENNAILPNGQTIFTGSTL-----------QIPRITKEDRGAYYCVAQNG 148
G+PIP + + + + L Q+ + D + G
Sbjct: 129 GNPIPGLDELGVGPEPGADDANLVRLTELPAGSPVAVVVRQLTEHVQGDIDLITRLKDAG 188
Query: 149 IGRGARRKIEVKVEFAPIVTVQSTR 173
+ AR +E + +
Sbjct: 189 VVPNARVTVETTPGGGVTIVIPGHE 213
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune
system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L
2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L*
1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L*
1mfb_L* ...
Length = 212
Score = 26.1 bits (58), Expect = 7.9
Identities = 9/27 (33%), Positives = 11/27 (40%), Gaps = 6/27 (22%)
Query: 123 FTGS------TLQIPRITKEDRGAYYC 143
F+GS L I ED Y+C
Sbjct: 64 FSGSLIGDKAALTITGAQTEDEAIYFC 90
>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus
musculus}
Length = 233
Score = 26.5 bits (59), Expect = 8.0
Identities = 8/27 (29%), Positives = 10/27 (37%), Gaps = 6/27 (22%)
Query: 123 FTGS------TLQIPRITKEDRGAYYC 143
F+ S I + ED YYC
Sbjct: 84 FSSSGYGTDFVFTIENMLSEDVADYYC 110
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A
{Homo sapiens}
Length = 368
Score = 26.1 bits (58), Expect = 9.9
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 7/38 (18%)
Query: 89 GQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGS 126
Q++Q+ H P+ TI W + PN + TGS
Sbjct: 118 NQAIQIAQH--DAPVKTIHWIKA-----PNYSCVMTGS 148
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.133 0.407
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,595,081
Number of extensions: 209868
Number of successful extensions: 2247
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1449
Number of HSP's successfully gapped: 801
Length of query: 232
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 142
Effective length of database: 4,188,903
Effective search space: 594824226
Effective search space used: 594824226
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.3 bits)