RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15208
(1027 letters)
>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics,
seattle structural G center for infectious disease; HET:
ADN NAD; 2.39A {Brucella melitensis biovar abortus}
Length = 464
Score = 838 bits (2167), Expect = 0.0
Identities = 296/466 (63%), Positives = 361/466 (77%), Gaps = 3/466 (0%)
Query: 562 SADFVIADINLSQWGRKEIEIAETEMFSLISIREEFVKSKPLKGARISGSIHMTIQTAVL 621
V+ DI+L+ WGRKE++IAETEM L++ REEF KS+PLKGARISGS+HMTIQTAVL
Sbjct: 2 PGSMVVKDISLADWGRKELDIAETEMPGLMAAREEFGKSQPLKGARISGSLHMTIQTAVL 61
Query: 622 IETLKCLGAEVRWSSCNIYSTQDHAAAAIASKGIPVFAFKGESISDYWEFNHRIFDWPGN 681
IETLK LGAEVRW+SCNI+STQDHAAAAIA+ G PVFA KGE++ +YW + +IF WP
Sbjct: 62 IETLKVLGAEVRWASCNIFSTQDHAAAAIAATGTPVFAVKGETLEEYWTYTDQIFQWP-- 119
Query: 682 SNTEQANMILDDGGDATFLLHLGAQAENNISILSNPCSEEEVCLFKSIKNKLKIDSKWYS 741
+ E +NMILDDGGDAT + +GA+AE +LSNP SEEE LF IK ++ +++
Sbjct: 120 -DGEPSNMILDDGGDATMYILIGARAEAGEDVLSNPQSEEEEVLFAQIKKRMAATPGFFT 178
Query: 742 SRLKQIKGVTEETTTGVYRLRRMFKEGKLSFPAINVNDSVTKSKFDNLYGCRESLIDGIK 801
+ IKGVTEETTTGV RL ++ K+G L FPAINVNDSVTKSKFDN YGC+ESL+DGI+
Sbjct: 179 KQRAAIKGVTEETTTGVNRLYQLQKKGLLPFPAINVNDSVTKSKFDNKYGCKESLVDGIR 238
Query: 802 RATDVMIAGKIAVIIGYGDVGKGSAQAMRALSAQVWIIEIDPICALQAAMEGFLVVTMEY 861
R TDVM+AGK+AV+ GYGDVGKGSAQ++ A+V + E+DPICALQAAM+GF VVT++
Sbjct: 239 RGTDVMMAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDGFEVVTLDD 298
Query: 862 AKKYGDIFVTCTGNYHVITHDHMRDMKDQAIVCNIGHFDNEIEVEKLKKYKWENIKPQVD 921
A DI VT TGN VIT DHMR MKD IV NIGHFDNEI+V L+ KW N+KPQVD
Sbjct: 299 AASTADIVVTTTGNKDVITIDHMRKMKDMCIVGNIGHFDNEIQVAALRNLKWTNVKPQVD 358
Query: 922 HIIFPDGKKIILLAEGRLVNLGCGTGHPSYVMSSSFANQTLAQIELFNNTSNYPIGIYTL 981
I FPDGK++ILL+EGRL+NLG TGHPS+VMS+SF NQ L QIELF T Y +Y L
Sbjct: 359 LIEFPDGKRLILLSEGRLLNLGNATGHPSFVMSASFTNQVLGQIELFTRTDAYKNEVYVL 418
Query: 982 PKILDEKVARLQLKKLNVQLSKLTDQQAKYIGVSKNGPYKLDNYRY 1027
PK LDEKVARL L KL +L+ L+++QA YIGV+ GP+K ++YRY
Sbjct: 419 PKHLDEKVARLHLDKLGAKLTVLSEEQAAYIGVTPQGPFKSEHYRY 464
>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid,
S-adenosyl-L-homocysteine hydro NAD, one-carbon
metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei}
PDB: 3glq_A*
Length = 494
Score = 814 bits (2103), Expect = 0.0
Identities = 331/476 (69%), Positives = 388/476 (81%), Gaps = 3/476 (0%)
Query: 552 LTDKAEVLKNSADFVIADINLSQWGRKEIEIAETEMFSLISIREEFVKSKPLKGARISGS 611
+ ++ D+V+ADI L+ WGRKE+ IAETEM L+ IR+E+ +PLKGARI+GS
Sbjct: 22 MNAAVIDSHSAQDYVVADIALAGWGRKELNIAETEMPGLVQIRDEYKAQQPLKGARIAGS 81
Query: 612 IHMTIQTAVLIETLKCLGAEVRWSSCNIYSTQDHAAAAIASKGIPVFAFKGESISDYWEF 671
+HMTIQT VLIETLK LGA+VRW+SCNI+STQDHAAAAI G PVFAFKGES+ +YWEF
Sbjct: 82 LHMTIQTGVLIETLKALGADVRWASCNIFSTQDHAAAAIVEAGTPVFAFKGESLDEYWEF 141
Query: 672 NHRIFDWPGNSNTEQANMILDDGGDATFLLHLGAQAENNISILSNPCSEEEVCLFKSIKN 731
+HRIF+WP E ANMILDDGGDAT LL LG++AE + S+++ P +EEEV LFKSI+
Sbjct: 142 SHRIFEWPNG---EFANMILDDGGDATLLLILGSKAEKDRSVIARPTNEEEVALFKSIER 198
Query: 732 KLKIDSKWYSSRLKQIKGVTEETTTGVYRLRRMFKEGKLSFPAINVNDSVTKSKFDNLYG 791
L+ID WYS RL IKGVTEETTTGV+RL +M K+G+L FPA NVNDSVTKSKFDNLYG
Sbjct: 199 HLEIDGSWYSKRLAHIKGVTEETTTGVHRLYQMEKDGRLPFPAFNVNDSVTKSKFDNLYG 258
Query: 792 CRESLIDGIKRATDVMIAGKIAVIIGYGDVGKGSAQAMRALSAQVWIIEIDPICALQAAM 851
CRESL+DGIKRATDVMIAGKIAV+ GYGDVGKG AQ++R L A VW+ EIDPICALQAAM
Sbjct: 259 CRESLVDGIKRATDVMIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAM 318
Query: 852 EGFLVVTMEYAKKYGDIFVTCTGNYHVITHDHMRDMKDQAIVCNIGHFDNEIEVEKLKKY 911
EG+ VVTMEYA DIFVT TGNYHVI HDHM+ M+ AIVCNIGHFD+EI+V ++Y
Sbjct: 319 EGYRVVTMEYAADKADIFVTATGNYHVINHDHMKAMRHNAIVCNIGHFDSEIDVASTRQY 378
Query: 912 KWENIKPQVDHIIFPDGKKIILLAEGRLVNLGCGTGHPSYVMSSSFANQTLAQIELFNNT 971
+WENIKPQVDHIIFPDGK++ILLAEGRLVNLGC TGHPS+VMS+SF NQTLAQIELF
Sbjct: 379 QWENIKPQVDHIIFPDGKRVILLAEGRLVNLGCATGHPSFVMSNSFTNQTLAQIELFTRG 438
Query: 972 SNYPIGIYTLPKILDEKVARLQLKKLNVQLSKLTDQQAKYIGVSKNGPYKLDNYRY 1027
Y +Y LPK LDEKVARL L ++ QLS+L+D QA YIGVSK GP+K D+YRY
Sbjct: 439 GEYANKVYVLPKHLDEKVARLHLARIGAQLSELSDDQAAYIGVSKAGPFKPDHYRY 494
>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD
cofactor, regul SAM-dependent methylation reactions; HET:
NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*
Length = 488
Score = 790 bits (2041), Expect = 0.0
Identities = 264/489 (53%), Positives = 328/489 (67%), Gaps = 15/489 (3%)
Query: 551 ELTDKAEVLKNSADFVIADINLSQWGRKEIEIAETEMFSLISIREEFVKSKPLKGARISG 610
+ E + ++ + D++ + +GR EIE+AE EM L++ R EF S+P KGA+I+G
Sbjct: 3 HMALLVEKTTSGREYKVKDMSQADFGRLEIELAEVEMPGLMASRSEFGPSQPFKGAKITG 62
Query: 611 SIHMTIQTAVLIETLKCLGAEVRWSSCNIYSTQDHAAAAIASKGIPVFAFKGESISDYWE 670
S+HMTIQTAVLIETL LGAEVRW SCNI+STQDHAAAAIA VFA+KGE++ +YW
Sbjct: 63 SLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSAAVFAWKGETLQEYWW 122
Query: 671 FNHRIFDWPGNSNTEQANMILDDGGDATFLLHLGAQAENN------ISILSNPCSEEEVC 724
R DW ++I+DDGGD T L+H G +AE + + E
Sbjct: 123 CTERALDWGPG---GGPDLIVDDGGDTTLLIHEGVKAEEIYEKSGQFPDPDSTDNAEFKI 179
Query: 725 LFKSIKNKLKIDSKWYSSRLKQIKGVTEETTTGVYRLRRMFKEGKLSFPAINVNDSVTKS 784
+ IK LK D K Y ++ GV+EETTTGV RL +M G L FPAINVNDSVTKS
Sbjct: 180 VLSIIKEGLKTDPKRYHKMKDRVVGVSEETTTGVKRLYQMQANGTLLFPAINVNDSVTKS 239
Query: 785 KFDNLYGCRESLIDGIKRATDVMIAGKIAVIIGYGDVGKGSAQAMRALSAQVWIIEIDPI 844
KFDNLYGCR SL DG+ RATDVMIAGK+AV+ GYGDVGKG A A++ A+V + EIDPI
Sbjct: 240 KFDNLYGCRHSLPDGLMRATDVMIAGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPI 299
Query: 845 CALQAAMEGFLVVTMEYAKKYGDIFVTCTGNYHVITHDHMRDMKDQAIVCNIGHFDNEIE 904
CALQA MEG V+T+E DIFVT TGN +I DHM+ MK+ AIVCNIGHFDNEI+
Sbjct: 300 CALQATMEGLQVLTLEDVVSEADIFVTTTGNKDIIMLDHMKKMKNNAIVCNIGHFDNEID 359
Query: 905 VEKLKKY---KWENIKPQVDHIIFPDGKK-IILLAEGRLVNLGCGTGHPSYVMSSSFANQ 960
+ L+ + K IKPQ D +FP+ II+LAEGRL+NLGC TGHPS+VMS SF NQ
Sbjct: 360 MLGLETHPGVKRITIKPQTDRWVFPETNTGIIILAEGRLMNLGCATGHPSFVMSCSFTNQ 419
Query: 961 TLAQIELFNN--TSNYPIGIYTLPKILDEKVARLQLKKLNVQLSKLTDQQAKYIGVSKNG 1018
+AQ+EL+N + Y +Y LPK LDEKVA L L+KL +L+KL+ QA YI V G
Sbjct: 420 VIAQLELWNEKSSGKYEKKVYVLPKHLDEKVAALHLEKLGAKLTKLSKDQADYISVPVEG 479
Query: 1019 PYKLDNYRY 1027
PYK +YRY
Sbjct: 480 PYKPFHYRY 488
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics,
SGC stockholm, S genomics consortium, SGC, hydrolase,
NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB:
3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A*
1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*
Length = 436
Score = 782 bits (2023), Expect = 0.0
Identities = 250/473 (52%), Positives = 311/473 (65%), Gaps = 45/473 (9%)
Query: 563 ADFVIADINLSQWGRKEIEIAETEMFSLISIREEFVKSKPLKGARISGSIHMTIQTAVLI 622
+ + + DI+L++WGR+E+E+AE EM L+ +R E+ SKPLKGA+I+G +HMT+QTAVLI
Sbjct: 1 SMYKVRDISLAEWGRRELELAENEMPGLMELRREYGPSKPLKGAKIAGCLHMTMQTAVLI 60
Query: 623 ETLKCLGAEVRWSSCNIYSTQDHAAAAIASKGIPVFAFKGESISDYWEFNHRIFDWPGNS 682
ETL LGAEVRW+SCNI+STQDHAAAAIA +GIPVFA+KGE+ +Y +
Sbjct: 61 ETLVELGAEVRWASCNIFSTQDHAAAAIAKRGIPVFAWKGETEEEYMWCMKQTLKGFSGD 120
Query: 683 NTEQANMILDDGGDATFLLHLGAQAENNISILSNPCSEEEVCLFKSIKNKLKIDSKWYSS 742
NM+LDDGGD T +
Sbjct: 121 G--YPNMLLDDGGDLTNYVL-----------------------------------DECKE 143
Query: 743 RLKQIKGVTEETTTGVYRLRRMFKEGKLSFPAINVNDSVTKSKFDNLYGCRESLIDGIKR 802
+I GV+EETTTGV L + + GKL+ PA+NVNDSVTKSKFDNLYGCRESL+DGIKR
Sbjct: 144 LDGKIYGVSEETTTGVKNLYKRLQRGKLTIPAMNVNDSVTKSKFDNLYGCRESLVDGIKR 203
Query: 803 ATDVMIAGKIAVIIGYGDVGKGSAQAMRALSAQVWIIEIDPICALQAAMEGFLVVTMEYA 862
ATDVMIAGK A + GYGDVGKG A A+R A+V + E+DPI ALQAAMEG+ V+ +E
Sbjct: 204 ATDVMIAGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQVLLVEDV 263
Query: 863 KKYGDIFVTCTGNYHVITHDHMRDMKDQAIVCNIGHFDNEIEVEKLKKY--KWENIKPQV 920
+ IFVT TGN +IT +H M+D AIVCNIGHFD EI+V LK + +KPQV
Sbjct: 264 VEEAHIFVTTTGNDDIITSEHFPRMRDDAIVCNIGHFDTEIQVAWLKANAKERVEVKPQV 323
Query: 921 DHIIFPDGKKIILLAEGRLVNLGCGTGHPSYVMSSSFANQTLAQIELFNN------TSNY 974
D +G+ IILLAEGRLVNLGC +GHPS+VMS+SF NQ LAQIEL+ N
Sbjct: 324 DRYTMANGRHIILLAEGRLVNLGCASGHPSFVMSNSFCNQVLAQIELWTNRDTGKYPRGA 383
Query: 975 PIGIYTLPKILDEKVARLQLKKLNVQLSKLTDQQAKYIGVSKNGPYKLDNYRY 1027
+Y LPK LDEKVA L L KL +L+KLT +QA+YI +GP+K D+YRY
Sbjct: 384 KAQVYFLPKKLDEKVAALHLGKLGAKLTKLTPKQAEYINCPVDGPFKPDHYRY 436
>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers,
NAD binding DOMA amino acid insertional region,
hydrolase; HET: ADN NAD; 1.60A {Mycobacterium
tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*
Length = 494
Score = 783 bits (2023), Expect = 0.0
Identities = 264/483 (54%), Positives = 334/483 (69%), Gaps = 16/483 (3%)
Query: 559 LKNSADFVIADINLSQWGRKEIEIAETEMFSLISIREEFVKSKPLKGARISGSIHMTIQT 618
++N DF IAD++L+ +GRKE+ IAE EM L+S+R E+ + +PLKGARISGS+HMT+QT
Sbjct: 14 VRNGIDFKIADLSLADFGRKELRIAEHEMPGLMSLRREYAEVQPLKGARISGSLHMTVQT 73
Query: 619 AVLIETLKCLGAEVRWSSCNIYSTQDHAAAA---------IASKGIPVFAFKGESISDYW 669
AVLIETL LGAEVRW+SCNI+STQDHAAAA KG+PVFA+KGE++ +YW
Sbjct: 74 AVLIETLTALGAEVRWASCNIFSTQDHAAAAVVVGPHGTPDEPKGVPVFAWKGETLEEYW 133
Query: 670 EFNHRIFDWPGNSNTEQANMILDDGGDATFLLHLGAQAENNISILS--NPCSEEEVCLFK 727
++ WP + ANMILDDGGDAT L+ G Q E + E
Sbjct: 134 WAAEQMLTWPDPD--KPANMILDDGGDATMLVLRGMQYEKAGVVPPAEEDDPAEWKVFLN 191
Query: 728 SIKNKLKIDSKWYSSRLKQIKGVTEETTTGVYRLRRMFKEGKLSFPAINVNDSVTKSKFD 787
++ + + D ++ + +KGVTEETTTGV RL + G L+FPAINVNDSVTKSKFD
Sbjct: 192 LLRTRFETDKDKWTKIAESVKGVTEETTTGVLRLYQFAAAGDLAFPAINVNDSVTKSKFD 251
Query: 788 NLYGCRESLIDGIKRATDVMIAGKIAVIIGYGDVGKGSAQAMRALSAQVWIIEIDPICAL 847
N YG R SLIDGI R TD +I GK +I GYGDVGKG A+AM+ A+V + EIDPI AL
Sbjct: 252 NKYGTRHSLIDGINRGTDALIGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINAL 311
Query: 848 QAAMEGFLVVTMEYAKKYGDIFVTCTGNYHVITHDHMRDMKDQAIVCNIGHFDNEIEVEK 907
QA MEGF VVT+E A DI VT TGN +I +H++ MKD AI+ NIGHFDNEI++
Sbjct: 312 QAMMEGFDVVTVEEAIGDADIVVTATGNKDIIMLEHIKAMKDHAILGNIGHFDNEIDMAG 371
Query: 908 LKKY--KWENIKPQVDHIIFPD-GKKIILLAEGRLVNLGCGTGHPSYVMSSSFANQTLAQ 964
L++ N+KPQVD F D G+ II+L+EGRL+NLG TGHPS+VMS+SFANQT+AQ
Sbjct: 372 LERSGATRVNVKPQVDLWTFGDTGRSIIVLSEGRLLNLGNATGHPSFVMSNSFANQTIAQ 431
Query: 965 IELFNNTSNYPIGIYTLPKILDEKVARLQLKKLNVQLSKLTDQQAKYIGVSKNGPYKLDN 1024
IEL+ Y +Y LPK LDEKVAR+ ++ L L+KLT +QA+Y+GV GPYK D+
Sbjct: 432 IELWTKNDEYDNEVYRLPKHLDEKVARIHVEALGGHLTKLTKEQAEYLGVDVEGPYKPDH 491
Query: 1025 YRY 1027
YRY
Sbjct: 492 YRY 494
>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium
falciparum} SCOP: c.2.1.4 c.23.12.3
Length = 479
Score = 777 bits (2009), Expect = 0.0
Identities = 246/478 (51%), Positives = 334/478 (69%), Gaps = 13/478 (2%)
Query: 562 SADFVIADINLSQWGRKEIEIAETEMFSLISIREEFVKSKPLKGARISGSIHMTIQTAVL 621
+ DI+L+ +G+ ++EI+E EM L+ IREE+ K +PLK A+I+G +HMT++ A+L
Sbjct: 3 ENKSKVKDISLAPFGKMQMEISENEMPGLMRIREEYGKDQPLKNAKITGCLHMTVECALL 62
Query: 622 IETLKCLGAEVRWSSCNIYSTQDHAAAA-IASKGIPVFAFKGESISDYWEFNHRIFDWPG 680
IETL+ LGA++RW SCNIYST D+AAAA + + VFA+K E++ +YW W
Sbjct: 63 IETLQKLGAQIRWCSCNIYSTADYAAAAVSTLENVTVFAWKNETLEEYWWCVESALTWG- 121
Query: 681 NSNTEQANMILDDGGDATFLLHLGAQAENN------ISILSNPCSEEEVCLFKSIKNKLK 734
+ + +MI+DDGGDAT L+H G + E + +EEE C +KN +
Sbjct: 122 DGDDNGPDMIVDDGGDATLLVHKGVEYEKLYEEKNILPDPEKAKNEEERCFLTLLKNSIL 181
Query: 735 IDSKWYSSRLKQIKGVTEETTTGVYRLRRMFKEGKLSFPAINVNDSVTKSKFDNLYGCRE 794
+ K +++ K+I GV+EETTTGV RL++M K+ +L F AINVND+VTK K+DN+YGCR
Sbjct: 182 KNPKKWTNIAKKIIGVSEETTTGVLRLKKMDKQNELLFTAINVNDAVTKQKYDNVYGCRH 241
Query: 795 SLIDGIKRATDVMIAGKIAVIIGYGDVGKGSAQAMRALSAQVWIIEIDPICALQAAMEGF 854
SL DG+ RATD +I+GKI VI GYGDVGKG A +M+ L A+V+I EIDPICA+QA MEGF
Sbjct: 242 SLPDGLMRATDFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGF 301
Query: 855 LVVTMEYAKKYGDIFVTCTGNYHVITHDHMRDMKDQAIVCNIGHFDNEIEVEKLKKY--- 911
VVT++ GD F+TCTGN VI +H+ MK+ A+V NIGHFD+EI+V +L Y
Sbjct: 302 NVVTLDEIVDKGDFFITCTGNVDVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELFNYKGI 361
Query: 912 KWENIKPQVDHIIFPDGKKIILLAEGRLVNLGCGTGHPSYVMSSSFANQTLAQIELFNN- 970
EN+KPQVD I P+G KII+LA GRL+NLGC TGHP++VMS SF NQT AQ++L+ N
Sbjct: 362 HIENVKPQVDRITLPNGNKIIVLARGRLLNLGCATGHPAFVMSFSFCNQTFAQLDLWQNK 421
Query: 971 -TSNYPIGIYTLPKILDEKVARLQLKKLNVQLSKLTDQQAKYIGVSKNGPYKLDNYRY 1027
T+ Y +Y LPK LDEKVA LKKLN L++L D Q +++GV+K+GP+K + YRY
Sbjct: 422 DTNKYENKVYLLPKHLDEKVALYHLKKLNASLTELDDNQCQFLGVNKSGPFKSNEYRY 479
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD,
one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A
{Homo sapiens} PDB: 3mtg_A*
Length = 435
Score = 769 bits (1989), Expect = 0.0
Identities = 224/467 (47%), Positives = 306/467 (65%), Gaps = 43/467 (9%)
Query: 560 KNSADFVIADINLSQWGRKEIEIAETEMFSLISIREEFVKSKPLKGARISGSIHMTIQTA 619
K S+DF + +I +++GR+EIEIAE EM +L+++R+ KPL GA+I G H+T QTA
Sbjct: 9 KGSSDFCVKNIKQAEFGRREIEIAEQEMPALMALRKRAQGEKPLAGAKIVGCTHITAQTA 68
Query: 620 VLIETLKCLGAEVRWSSCNIYSTQDHAAAAIASKGIPVFAFKGESISDYWEFNHRIFDWP 679
VL+ETL LGA+ RW++CNIYST + AAA+A G PVFA+KGES D+W R +
Sbjct: 69 VLMETLGALGAQCRWAACNIYSTLNEVAAALAESGFPVFAWKGESEDDFWWCIDRCVNVE 128
Query: 680 GNSNTEQANMILDDGGDATFLLHLGAQAENNISILSNPCSEEEVCLFKSIKNKLKIDSKW 739
G Q NMILDDGGD T ++ K
Sbjct: 129 G----WQPNMILDDGGDLTHWIY-----------------------------------KK 149
Query: 740 YSSRLKQIKGVTEETTTGVYRLRRMFKEGKLSFPAINVNDSVTKSKFDNLYGCRESLIDG 799
Y + K+IKG+ EE+ TGV+RL ++ K GKL PA+NVNDSVTK KFDNLY CRES++DG
Sbjct: 150 YPNMFKKIKGIVEESVTGVHRLYQLSKAGKLCVPAMNVNDSVTKQKFDNLYCCRESILDG 209
Query: 800 IKRATDVMIAGKIAVIIGYGDVGKGSAQAMRALSAQVWIIEIDPICALQAAMEGFLVVTM 859
+KR TD+M GK V+ GYG+VGKG A++A+ + V++ EIDPICALQA M+GF +V +
Sbjct: 210 LKRTTDMMFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGFRLVKL 269
Query: 860 EYAKKYGDIFVTCTGNYHVITHDHMRDMKDQAIVCNIGHFDNEIEVEKLKK--YKWENIK 917
+ DI +TCTGN +V+T +H+ MK+ IVCN+GH + EI+V L+ WE ++
Sbjct: 270 NEVIRQVDIVITCTGNKNVVTREHLDRMKNSCIVCNMGHSNTEIDVASLRTPELTWERVR 329
Query: 918 PQVDHIIFPDGKKIILLAEGRLVNLGCGTGHPSYVMSSSFANQTLAQIELFNNT-SNYPI 976
QVDH+I+PDGK+I+LLAEGRL+NL C T P++V+S + Q LA IEL+N Y
Sbjct: 330 SQVDHVIWPDGKRIVLLAEGRLLNLSCST-VPTFVLSITATTQALALIELYNAPEGRYKQ 388
Query: 977 GIYTLPKILDEKVARLQLKKLNVQLSKLTDQQAKYIGVSKNGPYKLD 1023
+Y LPK +DE VA L L + L++LTD+QAKY+G++KNGP+K +
Sbjct: 389 DVYLLPKKMDEYVASLHLPTFDAHLTELTDEQAKYLGLNKNGPFKPN 435
>3iml_A S-adenosylmethionine synthetase; structural genomics, ATP-BI
cobalt, magnesium, metal-binding, nucleotide-binding,
one-C metabolism; 2.35A {Burkholderia pseudomallei}
Length = 399
Score = 762 bits (1971), Expect = 0.0
Identities = 268/377 (71%), Positives = 321/377 (85%), Gaps = 1/377 (0%)
Query: 188 ESVSEGHPDKIADQISDAILDEIFLKDLKARVAAETLCNNNLIVLSGEITTDANIDYVNI 247
ESVSEGHPDK+ADQISDAILD I +D +RVAAETLCN L+VL+GEITT ANIDY+ I
Sbjct: 14 ESVSEGHPDKVADQISDAILDAILAQDKYSRVAAETLCNTGLVVLAGEITTTANIDYIQI 73
Query: 248 VRKTIKDIGYNNIDYGIDYKSCAVLLIYNKQSLDIAQGVNEGEGLNFDQGAGDQGLMFGY 307
R TIK IGY+N DYGIDY+ CAVL+ Y+KQS DIAQGV+ N DQGAGDQGLMFGY
Sbjct: 74 ARDTIKRIGYDNTDYGIDYRGCAVLVAYDKQSPDIAQGVDRAHDNNLDQGAGDQGLMFGY 133
Query: 308 ACDETPELMPSAIYYSHLIVKRQSELRKNGNLPWLRPDAKSQVTLRYDNGKPVAIDTIVL 367
ACDETPELMP I+ SH +V+RQ+ LR++G LPWLRPDAKSQVT+RY +GKP +IDT+VL
Sbjct: 134 ACDETPELMPLPIHLSHRLVERQANLRRDGRLPWLRPDAKSQVTVRYVDGKPHSIDTVVL 193
Query: 368 STQHDPEIPYRSIKEAAIEEIIRPIIPKNLL-KNTRYLINPTGRFVIGGPKGDCGLTGRK 426
STQH PEI +++EA IEE+I+P +P +L+ + ++L+NPTGRFVIGGP+GDCGLTGRK
Sbjct: 194 STQHAPEIDLPALREAVIEEVIKPTLPADLIKGDIKFLVNPTGRFVIGGPQGDCGLTGRK 253
Query: 427 IIVDTYGGAAPHGGGAFSGKDPSKIDRSAAYVGRYIAKNIVAANLAKRCQIQISYAIGVA 486
IIVDTYGGAAPHGGGAFSGKDPSK+DRSAAY GRY+AKNIVAA LA R IQ+SYAIGVA
Sbjct: 254 IIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLASRALIQVSYAIGVA 313
Query: 487 KPTSIMVTSFGSGKISDEKLTMLVKKHFDLRPKNIIKMLNLLRPIYKKTSVYGHFGRKEP 546
+PTS+MV +FG+G++SDE +T LV++HFDLRPK II+ML+LLRPIY+KT+ YGHFGR+EP
Sbjct: 314 EPTSVMVNTFGTGRVSDETITKLVREHFDLRPKGIIQMLDLLRPIYEKTAAYGHFGREEP 373
Query: 547 EFTWELTDKAEVLKNSA 563
EF+WE DKA L +A
Sbjct: 374 EFSWEAADKALALAEAA 390
>1p7l_A S-adenosylmethionine synthetase; AMPPNP, SAM, transferase; HET: SAM
ANP PPK; 2.50A {Escherichia coli} SCOP: d.130.1.1
d.130.1.1 d.130.1.1 PDB: 1fug_A 1mxb_A* 1mxc_A* 1mxa_A*
1rg9_A* 1xra_A 1xrb_A 1xrc_A
Length = 383
Score = 751 bits (1943), Expect = 0.0
Identities = 243/377 (64%), Positives = 297/377 (78%), Gaps = 5/377 (1%)
Query: 188 ESVSEGHPDKIADQISDAILDEIFLKDLKARVAAETLCNNNLIVLSGEITTDANIDYVNI 247
ESVSEGHPDKIADQISDA+LD I +D KARVA ET ++++ GEITT A +D I
Sbjct: 8 ESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVDIEEI 67
Query: 248 VRKTIKDIGYNNIDYGIDYKSCAVLLIYNKQSLDIAQGVNEGEGLNFDQGAGDQGLMFGY 307
R T+++IGY + D G D SCAVL KQS DI QGV+ + L +QGAGDQGLMFGY
Sbjct: 68 TRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPDINQGVDRADPL--EQGAGDQGLMFGY 125
Query: 308 ACDETPELMPSAIYYSHLIVKRQSELRKNGNLPWLRPDAKSQVTLRYDNGKPVAIDTIVL 367
A +ET LMP+ I Y+H +V+RQ+E+RKNG LPWLRPDAKSQVT +YD+GK V ID +VL
Sbjct: 126 ATNETDVLMPAPITYAHRLVQRQAEVRKNGTLPWLRPDAKSQVTFQYDDGKIVGIDAVVL 185
Query: 368 STQHDPEIPYRSIKEAAIEEIIRPIIPKNLL-KNTRYLINPTGRFVIGGPKGDCGLTGRK 426
STQH EI +S++EA +EEII+PI+P L T++ INPTGRFVIGGP GDCGLTGRK
Sbjct: 186 STQHSEEIDQKSLQEAVMEEIIKPILPAEWLTSATKFFINPTGRFVIGGPMGDCGLTGRK 245
Query: 427 IIVDTYGGAAPHGGGAFSGKDPSKIDRSAAYVGRYIAKNIVAANLAKRCQIQISYAIGVA 486
IIVDTYGG A HGGGAFSGKDPSK+DRSAAY RY+AKNIVAA LA RC+IQ+SYAIGVA
Sbjct: 246 IIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVA 305
Query: 487 KPTSIMVTSFGSGKISDEKLTMLVKKHFDLRPKNIIKMLNLLRPIYKKTSVYGHFGRKEP 546
+PTSIMV +FG+ K+ E+LT+LV++ FDLRP +I+ML+LL PIYK+T+ YGHFGR
Sbjct: 306 EPTSIMVETFGTEKVPSEQLTLLVREFFDLRPYGLIQMLDLLHPIYKETAAYGHFGR--E 363
Query: 547 EFTWELTDKAEVLKNSA 563
F WE TDKA++L+++A
Sbjct: 364 HFPWEKTDKAQLLRDAA 380
>3s82_A S-adenosylmethionine synthase; seattle structural genomics center
for infectious disease, S adenosylmethionine synthetase,
transferase; 1.73A {Mycobacterium avium} PDB: 3tde_A
3rv2_A
Length = 407
Score = 738 bits (1909), Expect = 0.0
Identities = 195/390 (50%), Positives = 262/390 (67%), Gaps = 17/390 (4%)
Query: 188 ESVSEGHPDKIADQISDAILDEIFLKDLKARVAAETLCNNNLIVLSGEITTDANIDYVN- 246
ESV+EGHPDKI D ISD++LD + +D ++RVA ETL + + GE+TT A + +
Sbjct: 15 ESVTEGHPDKICDAISDSVLDALLAQDPRSRVAVETLVTTGQVHVVGEVTTTAKEAFADI 74
Query: 247 --IVRKTIKDIGYNNIDYGIDYKSCAVLLIYNKQSLDIAQGVNEGEGLNF--------DQ 296
VR+ I DIGY++ D G D SC V + QS DIAQGV+ Q
Sbjct: 75 TNTVRERILDIGYDSSDKGFDGASCGVNIGIGAQSPDIAQGVDTAHETRVEGAADPLDAQ 134
Query: 297 GAGDQGLMFGYACDETPELMPSAIYYSHLIVKRQSELRKNGNLPWLRPDAKSQVTLRYDN 356
GAGDQGLMFGYA ++TPE MP I +H + +R +E+RKNG LP+LRPD K+QVT+ +++
Sbjct: 135 GAGDQGLMFGYAINDTPERMPLPIALAHRLSRRLTEVRKNGVLPYLRPDGKTQVTIEFED 194
Query: 357 GKPVAIDTIVLSTQHDPEIPYRS-----IKEAAIEEIIRPIIPKNLL-KNTRYLINPTGR 410
PV +DT+V+STQH +I + I+E + ++ + L +TR L+NPTG+
Sbjct: 195 DVPVRLDTVVISTQHAADIDLENTLTPDIREKVLNTVLNDLAHDTLDTSSTRLLVNPTGK 254
Query: 411 FVIGGPKGDCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKIDRSAAYVGRYIAKNIVAAN 470
FV+GGP GD GLTGRKIIVDTYGG A HGGGAFSGKDPSK+DRSAAY R++AKNIVAA
Sbjct: 255 FVVGGPMGDAGLTGRKIIVDTYGGWARHGGGAFSGKDPSKVDRSAAYAMRWVAKNIVAAG 314
Query: 471 LAKRCQIQISYAIGVAKPTSIMVTSFGSGKISDEKLTMLVKKHFDLRPKNIIKMLNLLRP 530
LA+R ++Q++YAIG A P + + +FG+ + K+ +V + FDLRP II+ L+LLRP
Sbjct: 315 LAERVEVQVAYAIGKAAPVGLFIETFGTATVDPVKIEKIVPEVFDLRPGAIIRDLDLLRP 374
Query: 531 IYKKTSVYGHFGRKEPEFTWELTDKAEVLK 560
IY +T+ YGHFGR + E WE +K + LK
Sbjct: 375 IYAQTAAYGHFGRTDVELPWEQLNKVDDLK 404
>3so4_A Methionine-adenosyltransferase; structural genomics, medical
structural genomics of pathogen protozoa, MSGPP; 3.18A
{Entamoeba histolytica}
Length = 415
Score = 735 bits (1900), Expect = 0.0
Identities = 198/378 (52%), Positives = 254/378 (67%), Gaps = 6/378 (1%)
Query: 188 ESVSEGHPDKIADQISDAILDEIFLKDLKARVAAETLCNNNLIVLSGEITTDANIDYVNI 247
ESVS GHPDK+ DQISDAILD +D K+ VA ET LI++ GEITT+A ID I
Sbjct: 28 ESVSGGHPDKMCDQISDAILDACLAQDPKSHVACETATKTGLILVLGEITTNAVIDIPKI 87
Query: 248 VRKTIKDIGYNNIDYGIDYKSCAVLLIYNKQSLDIAQGVNEGEGLNFDQGAGDQGLMFGY 307
VR +K IGY++ + G DY++C+VL +QS DIA+GV+ + D GAGDQG+MFGY
Sbjct: 88 VRGVVKSIGYDDTNKGFDYQTCSVLSCVEQQSQDIAKGVHVEKKEE-DIGAGDQGIMFGY 146
Query: 308 ACDETPELMPSAIYYSHLIVKRQSELRKNGNLPWLRPDAKSQVTLRYDNG----KPVAID 363
A DE+ E+MP S ++ R E R+ G LPWLRPD+KSQVTL Y+ KP+ +
Sbjct: 147 ATDESKEMMPLTHVLSTKLILRLQECREKGILPWLRPDSKSQVTLEYEEVEGHLKPIRVH 206
Query: 364 TIVLSTQHDPEIPYRSIKEAAIEEIIRPIIPKNLL-KNTRYLINPTGRFVIGGPKGDCGL 422
TIV+STQH + I + EE+ + +IPK L+ NP+GRFVIGGP GD GL
Sbjct: 207 TIVISTQHADNVSNEEIAKGLEEEVTQKVIPKELMDDKMLRYYNPSGRFVIGGPMGDAGL 266
Query: 423 TGRKIIVDTYGGAAPHGGGAFSGKDPSKIDRSAAYVGRYIAKNIVAANLAKRCQIQISYA 482
TGRKIIVDTYGG HGGGAFSGKD SK+DRS AY R+IAK++V A L R +Q+SYA
Sbjct: 267 TGRKIIVDTYGGWGAHGGGAFSGKDSSKVDRSGAYCARWIAKSLVHAGLCHRVLVQLSYA 326
Query: 483 IGVAKPTSIMVTSFGSGKISDEKLTMLVKKHFDLRPKNIIKMLNLLRPIYKKTSVYGHFG 542
IGV+ P SI V ++G+G + L +V K+FD+RP IIK L L RPI++KT+V GHFG
Sbjct: 327 IGVSHPLSINVNTYGTGICDESILVDIVNKNFDMRPGMIIKELGLTRPIFQKTAVGGHFG 386
Query: 543 RKEPEFTWELTDKAEVLK 560
R +P+F WE + E+
Sbjct: 387 RNDPDFKWEFPKELEIPA 404
>2p02_A S-adenosylmethionine synthetase isoform type-2; structural
genomics, structural genomics consortium, SGC,
transferase; HET: SAM; 1.21A {Homo sapiens} SCOP:
d.130.1.1 d.130.1.1 d.130.1.1 PDB: 1qm4_A 1o92_A*
1o93_A* 1o90_A* 1o9t_A 2obv_A*
Length = 396
Score = 723 bits (1869), Expect = 0.0
Identities = 194/375 (51%), Positives = 266/375 (70%), Gaps = 8/375 (2%)
Query: 188 ESVSEGHPDKIADQISDAILDEIFLKDLKARVAAETLCNNNLIVLSGEITTDANIDYVNI 247
ESV EGHPDKI DQISDA+LD +D A+VA ET+ +I+L+GEIT+ A +DY +
Sbjct: 24 ESVGEGHPDKICDQISDAVLDAHLQQDPDAKVACETVAKTGMILLAGEITSRAAVDYQKV 83
Query: 248 VRKTIKDIGYNNIDYGIDYKSCAVLLIYNKQSLDIAQGVNEGEGLNFDQGAGDQGLMFGY 307
VR+ +K IGY++ G DYK+C VL+ +QS DIAQGV+ D GAGDQGLMFGY
Sbjct: 84 VREAVKHIGYDDSSKGFDYKTCNVLVALEQQSPDIAQGVHLDRNEE-DIGAGDQGLMFGY 142
Query: 308 ACDETPELMPSAIYYSHLIVKRQSELRKNGNLPWLRPDAKSQVTLRYDNGK----PVAID 363
A DET E MP I +H + + +ELR+NG LPWLRPD+K+QVT++Y + P+ +
Sbjct: 143 ATDETEECMPLTIVLAHKLNAKLAELRRNGTLPWLRPDSKTQVTVQYMQDRGAVLPIRVH 202
Query: 364 TIVLSTQHDPEIPYRSIKEAAIEEIIRPIIPKNLL-KNTRYLINPTGRFVIGGPKGDCGL 422
TIV+S QHD E+ +++A E++I+ ++P L ++T Y + P+GRFVIGGP+GD GL
Sbjct: 203 TIVISVQHDEEVCLDEMRDALKEKVIKAVVPAKYLDEDTIYHLQPSGRFVIGGPQGDAGL 262
Query: 423 TGRKIIVDTYGGAAPHGGGAFSGKDPSKIDRSAAYVGRYIAKNIVAANLAKRCQIQISYA 482
TGRKIIVDTYGG HGGGAFSGKD +K+DRSAAY R++AK++V L +R +Q+SYA
Sbjct: 263 TGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKGGLCRRVLVQVSYA 322
Query: 483 IGVAKPTSIMVTSFGSGKISDEKLTMLVKKHFDLRPKNIIKMLNLLRPIYKKTSVYGHFG 542
IGV+ P SI + +G+ + S+ +L +VKK+FDLRP I++ L+L +PIY++T+ YGHFG
Sbjct: 323 IGVSHPLSISIFHYGTSQKSERELLEIVKKNFDLRPGVIVRDLDLKKPIYQRTAAYGHFG 382
Query: 543 RKEPEFTWELTDKAE 557
R F WE+ K +
Sbjct: 383 R--DSFPWEVPKKLK 395
>3trd_A Alpha/beta hydrolase; cellular processes; 1.50A {Coxiella burnetii}
Length = 208
Score = 135 bits (342), Expect = 2e-36
Identities = 68/190 (35%), Positives = 103/190 (54%), Gaps = 15/190 (7%)
Query: 10 INGSVGILHCAINFPSSIKLLKLKGVVLIAHPHPLFGGTMDNKVVQTLVRVMLSLGYISI 69
I G VG L I P I+ +I HPHPL GGTM+NKVV TL + + LG ++
Sbjct: 11 IQGPVGQLEVMITRPKGIEK---SVTGIICHPHPLHGGTMNNKVVTTLAKALDELGLKTV 67
Query: 70 RMNFRGVGASSGTYDSGNGETDDMEILLRYIQKKYPYLPIILAGFSFGTFVQAKLQKRLD 129
R NFRGVG S G YD+G GE +D++ +LR+++ + I LAGFSFG ++ AK+
Sbjct: 68 RFNFRGVGKSQGRYDNGVGEVEDLKAVLRWVEHHWSQDDIWLAGFSFGAYISAKVAYDQK 127
Query: 130 KEISIKILILISVAVKKW---LIPEVPKNTIIIHGELDEIIPLKDVFLWANPLDIPV--V 184
+ LI ++ V + ++ +I+ G+ DE++P + V + N + PV V
Sbjct: 128 ----VAQLISVAPPVFYEGFASLTQMASPWLIVQGDQDEVVPFEQVKAFVNQISSPVEFV 183
Query: 185 VIPESVSEGH 194
V+ + H
Sbjct: 184 VMSGA---SH 190
>2fuk_A XC6422 protein; A/B hydrolase, structural genomics, X-RAY
diffraction; 1.60A {Xanthomonas campestris} SCOP:
c.69.1.36
Length = 220
Score = 120 bits (302), Expect = 4e-31
Identities = 56/210 (26%), Positives = 99/210 (47%), Gaps = 7/210 (3%)
Query: 1 MISNTKFFNINGSVGILHCAINFPSSIKLLKLKGVVLIAHPHPLFGGTMDNKVVQTLVRV 60
+ + ++G VG L A++ P ++ ++ HP GG+M NKVV R
Sbjct: 6 FPTESAALTLDGPVGPLDVAVDLPEPDVAVQ-PVTAIVCHPLSTEGGSMHNKVVTMAARA 64
Query: 61 MLSLGYISIRMNFRGVGASSGTYDSGNGETDDMEILLRYIQKKYPYLPIILAGFSFGTFV 120
+ LG +R NFR VG S+G++D G+GE DD+ + +++ + P + LAGFSFG +V
Sbjct: 65 LRELGITVVRFNFRSVGTSAGSFDHGDGEQDDLRAVAEWVRAQRPTDTLWLAGFSFGAYV 124
Query: 121 QAKLQKRLDKEISIKILILISVAVKKWLIPEVPKNTIIIHGELDEIIPLKDVFLWANPLD 180
L+ E + I I + + P ++I G+ DEI+ + V+ W L+
Sbjct: 125 S--LRAAAALEPQVLISIAPPAGRWDFSDVQPPAQWLVIQGDADEIVDPQAVYDWLETLE 182
Query: 181 IP--VVVIPES--VSEGHPDKIADQISDAI 206
+V +P++ + + +
Sbjct: 183 QQPTLVRMPDTSHFFHRKLIDLRGALQHGV 212
>2qjw_A Uncharacterized protein XCC1541; putative hydrolase of the
alpha/beta superfamily, structural genomics; HET: MSE
TLA P6G; 1.35A {Xanthomonas campestris PV}
Length = 176
Score = 117 bits (294), Expect = 2e-30
Identities = 37/158 (23%), Positives = 67/158 (42%), Gaps = 11/158 (6%)
Query: 33 KGVVLIAHPHPLFGGTMDNKVVQTLVRVMLSLGYISIRMNFRGVGASSGTYDSGNGETDD 92
+G ++AH F D V L V LG+ R +F + A G+
Sbjct: 4 RGHCILAHG---FESGPDALKVTALAEVAERLGWTHERPDFTDLDARRDLGQLGDVR-GR 59
Query: 93 MEILLRYIQKKYPYLPIILAGFSFGTFVQAKLQKRLDKEISIKILILISVAVKKWLIPEV 152
++ LL + P++LAG S G+++ A ++ ++ + L L+ K +P +
Sbjct: 60 LQRLLEIARAATEKGPVVLAGSSLGSYIAA----QVSLQVPTRALFLMVPPTKMGPLPAL 115
Query: 153 PKNTI---IIHGELDEIIPLKDVFLWANPLDIPVVVIP 187
+ I+H DE+IP DV WA ++++
Sbjct: 116 DAAAVPISIVHAWHDELIPAADVIAWAQARSARLLLVD 153
>2i3d_A AGR_C_3351P, hypothetical protein ATU1826; structural genomics,
APC5865, hydrolase, PSI-2, protein STRU initiative; HET:
MSE; 1.50A {Agrobacterium tumefaciens str} SCOP:
c.69.1.36
Length = 249
Score = 111 bits (277), Expect = 2e-27
Identities = 55/219 (25%), Positives = 91/219 (41%), Gaps = 13/219 (5%)
Query: 1 MISNTKFFNINGSVGILHCAINFPSSIKLLKLKGVVLIAHPHPLFGGTMDNKVVQTLVRV 60
+ NG G L + +I HPHP FGGTM+N++V L +
Sbjct: 19 FQGHMPEVIFNGPAGRLEGRYQPSKEKS----APIAIILHPHPQFGGTMNNQIVYQLFYL 74
Query: 61 MLSLGYISIRMNFRGVGASSGTYDSGNGETDDMEILLRYIQKKYP-YLPIILAGFSFGTF 119
G+ ++R NFR +G S G +D G GE D L ++Q +P +AG+SFG +
Sbjct: 75 FQKRGFTTLRFNFRSIGRSQGEFDHGAGELSDAASALDWVQSLHPDSKSCWVAGYSFGAW 134
Query: 120 VQAKLQKRLDKEISIKILILISVAVKKWLIPEVPKNTIIIHGELDEIIPLKDVFLWANPL 179
+ +L R + + + P + +II+G+ D++ P KDV L
Sbjct: 135 IGMQLLMRRPEIEGFMSIAPQPNTYDFSFLAPCPSSGLIINGDADKVAPEKDVNGLVEKL 194
Query: 180 ------DIPVVVIPES--VSEGHPDKIADQISDAILDEI 210
I +P + G D++ + D + +
Sbjct: 195 KTQKGILITHRTLPGANHFFNGKVDELMGECEDYLDRRL 233
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 82.7 bits (204), Expect = 3e-17
Identities = 31/199 (15%), Positives = 66/199 (33%), Gaps = 19/199 (9%)
Query: 707 AENNISILSNPCSEEEVCLFKSIKNKLKIDSKWYSSRLKQ----IKGVTEETTTGVYRLR 762
+ +L + E + N+ + ++ + G++ L
Sbjct: 57 NTVDAILLPISGTNEAGKVDTIFSNESIVLTEEMIEKTPNHCVVYSGISNT------YLN 110
Query: 763 RMFKEGKLSFPAINVNDSVTKSKFDNLYGCRESLIDGIKRATDVMIAGKIAVIIGYGDVG 822
+ K+ + + D + N E I + TD I G ++G G VG
Sbjct: 111 QCMKKTNRTLVKLMERDDIA---IYNSIPTAEGTIMMAIQHTDFTIHGANVAVLGLGRVG 167
Query: 823 KGSAQAMRALSAQVWIIEIDPICALQAAMEGFLVVTM----EYAKKYGDIFVTCTGNYHV 878
A+ AL A+V + + + A G + + + D+ + T V
Sbjct: 168 MSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDV-DVCI-NTIPALV 225
Query: 879 ITHDHMRDMKDQAIVCNIG 897
+T + + +M V ++
Sbjct: 226 VTANVLAEMPSHTFVIDLA 244
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 71.4 bits (174), Expect = 1e-12
Identities = 85/591 (14%), Positives = 163/591 (27%), Gaps = 178/591 (30%)
Query: 492 MVTSFGSGKISDEKLTMLVKKHF--DLRPKNIIKMLNLLRPIYKKTSVYGHFGRKEPE-- 547
M G + + + + + F + K++ ++ + I K + K+
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDV---QDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 548 ---FTWELTDKAE---------VLKNSADFVIADINLSQWGRKEIEIAETEMFSLISIRE 595
W L K E VL+ + F+++ I + E I R+
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI------KTEQRQPSMMTRMYIEQRD 117
Query: 596 EFVKSKPL--KGARISGSIHMTIQTA---------VLIETLK-----CLGAEVRWSSCNI 639
+ K ++ ++ A VLI+ + + +V C
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV----CLS 173
Query: 640 YSTQDHAAAAIASKGIPVFAFKGESISDYWEFNHRIFDWPGNSNTEQANMILDDGGDATF 699
Y Q + +IF W
Sbjct: 174 YKVQCK-------------------------MDFKIF-W--------------------- 186
Query: 700 LLHLGAQAENNISILSNPCSEEEVCLFKSIKNKL--KIDSKWYSSRLKQIKGVTEETTTG 757
L+L C+ E L + KL +ID W +SR + +
Sbjct: 187 -LNLKN------------CNSPETVL--EMLQKLLYQIDPNW-TSRSDHSSNIKLRIHSI 230
Query: 758 VYRLRRMFKEGKLSFPA---I--NVNDSVTKSKFDNLYGCRESLIDGIKRATDVMIAGKI 812
LRR+ K + + NV ++ + F+ C+ L K+ TD + A
Sbjct: 231 QAELRRLLKSKP--YENCLLVLLNVQNAKAWNAFNL--SCKILLTTRFKQVTDFLSAATT 286
Query: 813 AVI-IGYGDVGKGSAQAMRALSAQVWIIEID-PICALQAAMEGFLVVTMEYAKKYGDIFV 870
I + + + + L + D P + +++
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP---REVLTTNPRRLSIIAES------- 336
Query: 871 TCTGNYHVITHDHMRDMKDQAIVCNIGHFDN--EIEVEKLK---KYKWENIKPQ------ 919
+RD +DN + +KL + ++P
Sbjct: 337 -------------IRDGLA--------TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375
Query: 920 VDHIIFPDGKKIILLAEGRLVNL-GCGTGHPSYVMSSSFANQTLAQIELFNNTSNYPIGI 978
+FP I L + V+ + +L + + +T I I
Sbjct: 376 DRLSVFPPSAHI---PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST----ISI 428
Query: 979 YTLPKILDEKVARLQLKKLNVQLSKLTDQQAKYIGVSKNG--PYKLDNYRY 1027
++ L+ KV L+ + D + P LD Y Y
Sbjct: 429 PSI--YLELKVKLENEYALH---RSIVDHYNIPKTFDSDDLIPPYLDQYFY 474
Score = 65.3 bits (158), Expect = 9e-11
Identities = 67/467 (14%), Positives = 138/467 (29%), Gaps = 136/467 (29%)
Query: 28 KLLKLK---GVVLIAHPHPLFG-GTMDNKVVQTLVRVMLSLGYISIRMNFRGVGASSGTY 83
LL+L+ V++ + G G K + + + +M+F+ +
Sbjct: 143 ALLELRPAKNVLI----DGVLGSG----K--TWVALDVCLSYKVQCKMDFKIFWLNLKNC 192
Query: 84 DSGNGETDDMEILLRYIQKKY---------PYLPIILAGFSFGTFVQAKLQKR----LD- 129
+S + ++ LL I + L I +++K + L
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
Query: 130 ---KEI------SIKILIL---ISVAVKKWLIPEVPKNTIIIHGEL----DEIIPLKDVF 173
+ S KIL+ V +L + + H + DE +K +
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVT--DFLSAATTTHISLDHHSMTLTPDE---VKSLL 307
Query: 174 LWANPLDIPVVVIPESVSEGHPDKIA---------------------DQISDAI------ 206
LD +P V +P +++ D+++ I
Sbjct: 308 --LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365
Query: 207 LDE-----------IFLKDLKARVAAETLCNNNLIVLSGEITTDANIDYVN-IVRKTIKD 254
L+ +F + L ++ ++ + VN + + ++ +
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAH--IPTILLS-----LIWFDVIKSDVMVVVNKLHKYSLVE 418
Query: 255 IGYNNIDYGI-----DYKSCAVLLIYNKQSL--DIAQGVNEGEGLNFDQGAGDQGLMFGY 307
I + K + + N+ +L I N + + D + Y
Sbjct: 419 KQPKESTISIPSIYLELK----VKLENEYALHRSIVDHYNIPKTFDSDDLIPPY--LDQY 472
Query: 308 ACDETPELMPSAIYYSHLIVKRQSE----LRKN-GNLPWLRPDAKSQVTLRYDNGKPVAI 362
S I + HL E R + +L K +R+D
Sbjct: 473 FY--------SHIGH-HLKNIEHPERMTLFRMVFLDFRFLE--QK----IRHD-STAWNA 516
Query: 363 DTIVLSTQHDPEIPYRS-I--KEAAIEEIIRPIIPKNLLKNTRYLIN 406
+L+T + Y+ I + E ++ I+ L K LI
Sbjct: 517 SGSILNTLQQLKF-YKPYICDNDPKYERLVNAIL-DFLPKIEENLIC 561
Score = 61.4 bits (148), Expect = 2e-09
Identities = 98/664 (14%), Positives = 182/664 (27%), Gaps = 166/664 (25%)
Query: 348 SQVTLRYDNGKPVAIDTIV--LSTQHDPEIPYRSIKEAAIEEIIRPIIPKNLLKNTRYLI 405
+ +Y + V D V + ++P + + I+ II + K+ + T L
Sbjct: 12 GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHII---MSKDAVSGTLRLF 68
Query: 406 --------NPTGRFVIGGPKGDCGLTGRKIIVDTYGGAAP-----------HGGGAFSGK 446
+FV + + I + + + K
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 447 D----PSKI---------DRSAAYVGRY----IAKNIVAANLAKRCQIQISYAIGVAKPT 489
R A V K VA ++ SY +
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL------SYKVQCKMDF 182
Query: 490 SIMVTSFGSGKISDEKLTMLVKKHFDLRPKNIIKMLNLLRPIYKKTSVYGHFGRKEPEFT 549
I + + + L ML K + + P + + + S+ R
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR-----L 237
Query: 550 WELTDKAEVLKNSADFVIADINLSQWGRKEIEIAETEMFS-----LISIREEFVKSKPLK 604
+ L V+ ++ K F+ L++ R + V
Sbjct: 238 LKSKPYENCL-----LVLLNV----QNAKAW-----NAFNLSCKILLTTRFKQVTDFLSA 283
Query: 605 GARISGSIHMTIQTAVLIETLKCLGAEVRWSSCNIYSTQDHAAAAIASKGIP-VFAFKGE 663
S+ T E L ++ C QD + P + E
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLL---KYLDC---RPQDLPREVL--TTNPRRLSIIAE 335
Query: 664 SISDY---WEFNHRIFDWPGNSNTEQANMILDDGGDATFLLHLGAQAENNISILSNPCSE 720
SI D W+ W + N ++ I++ + L L P
Sbjct: 336 SIRDGLATWDN------WK-HVNCDKLTTIIE-----SSLNVL------------EP--A 369
Query: 721 EEVCLFKSI----KNKLKIDSK-----WYSSRLKQIKGVTEETTTGVYR---LRRMFKEG 768
E +F + + I + W+ IK +++ + + KE
Sbjct: 370 EYRKMFDRLSVFPPS-AHIPTILLSLIWFDV----IKSDVMVVVNKLHKYSLVEKQPKES 424
Query: 769 KLSFPAINVNDSVTKSKFDNLYGCRESLID--GIKRATD------VMIAGKIAVIIGYGD 820
+S P+I + K K +N Y S++D I + D + IG+
Sbjct: 425 TISIPSIYLE---LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL 481
Query: 821 VGKGSAQAMRALSA--------QVWIIEIDPICALQAAMEGFLVVTMEYAKKYGDIFVTC 872
+ M + I ++ L Y K Y
Sbjct: 482 KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY-KPY------- 533
Query: 873 TGNYHVITHDHMRDMKDQAIVCNIGHFDNEIEVEKLKKYKWENIKPQVDHIIFPDGKKII 932
I D+ D K + +V I F +IE E L K+ ++ + + + + I
Sbjct: 534 ------IC-DN--DPKYERLVNAILDFLPKIE-ENLICSKYTDL---LRIALMAEDEAIF 580
Query: 933 LLAE 936
A
Sbjct: 581 EEAH 584
>3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase,
cinnamoyl/Fe esterase, hydroxycinammates, extracellular;
HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A*
3pfc_A* 3s2z_A* 3pf8_A 3qm1_A*
Length = 270
Score = 67.9 bits (166), Expect = 2e-12
Identities = 36/251 (14%), Positives = 77/251 (30%), Gaps = 65/251 (25%)
Query: 17 LHCAINFPSSIKLLKLKGVVLIAHPHPLFGGTMDNKVVQTLVRVMLSLGYISIRMNFRGV 76
L P + +I H F + +++ + + S+R +F G
Sbjct: 34 LVGTREEPFGEI----YDMAIIFHG---FTANRNTSLLREIANSLRDENIASVRFDFNGH 86
Query: 77 GASSGTYDSGN--GETDDMEILLRYIQKKYPYLPIILAGFSFGTFVQAKLQKRLDKEISI 134
G S G +++ E +D +L Y++ I L G + G V + L I
Sbjct: 87 GDSDGKFENMTVLNEIEDANAILNYVKTDPHVRNIYLVGHAQGGVVASMLAGLYPDL--I 144
Query: 135 KILILIS--------------------------------VAVKKWLIPEVPKNTI----- 157
K ++L++ + + + + + I
Sbjct: 145 KKVVLLAPAATLKGDALEGNTQGVTYNPDHIPDRLPFKDLTLGGFYLRIAQQLPIYEVSA 204
Query: 158 -------IIHGELDEIIPLKDVFLWANPL-DIPVVVIPE---SVSEGHPDKIADQISDAI 206
+IHG D ++ + + + +I S+ + + +D
Sbjct: 205 QFTKPVCLIHGTDDTVVSPNASKKYDQIYQNSTLHLIEGADHCFSDSYQKNAVNLTTD-- 262
Query: 207 LDEIFLKDLKA 217
FL++ A
Sbjct: 263 ----FLQNNNA 269
>2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A*
Length = 251
Score = 62.0 bits (151), Expect = 1e-10
Identities = 33/216 (15%), Positives = 66/216 (30%), Gaps = 56/216 (25%)
Query: 3 SNTKFFNINGS--VGILHCAINFPSSIKLLKLKGVVLIAHPHPLFGGTMDNKVVQTLVRV 60
S + + +G L N P L +I H F G + + + +
Sbjct: 1 SGAMYIDCDGIKLNAYLDMPKNNPEKCPL------CIIIHG---FTGHSEERHIVAVQET 51
Query: 61 MLSLGYISIRMNFRGVGASSGTYDSGN--GETDDMEILLRYIQKKYPYLPIILAGFSFG- 117
+ +G ++R + G G S G ++ ++ ++ Y +K I +AG S G
Sbjct: 52 LNEIGVATLRADMYGHGKSDGKFEDHTLFKWLTNILAVVDYAKKLDFVTDIYMAGHSQGG 111
Query: 118 ------------------------------TFVQAKLQKRLDKEISIKILILISVAVKKW 147
+ K + I ++ +K
Sbjct: 112 LSVMLAAAMERDIIKALIPLSPAAMIPEIARTGELLGLKFDPENIPDELDAWDGRKLKGN 171
Query: 148 LI------------PEVPKNTIIIHGELDEIIPLKD 171
+ + K +I+HG+ DE +P +
Sbjct: 172 YVRVAQTIRVEDFVDKYTKPVLIVHGDQDEAVPYEA 207
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 62.4 bits (151), Expect = 8e-10
Identities = 119/670 (17%), Positives = 199/670 (29%), Gaps = 215/670 (32%)
Query: 342 LRPDAKSQVTLRYDN---GKPVAIDTIVLSTQHDPE----IPYRSIKEAAIEEIIRPIIP 394
RP +TL + + V + +++Q + +P + AA +E P P
Sbjct: 6 TRP-----LTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDE---PTTP 57
Query: 395 KNLLKNTRYLINPTGRFVIGG-PKGDCGLTGR--KIIVD----TY-GGAAPHG-GGAFSG 445
L+ ++L +V G + + + Y G H
Sbjct: 58 AELV--GKFL-----GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQ 110
Query: 446 KDPSKIDRSAAYVGRYI-AKNIVAANLAKRCQIQISYAI--GVAKPTSIMVTSFGS-GKI 501
++ + + ++ + YI A+ + K+ + A+ G A+ +I FG G
Sbjct: 111 ENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI----FGGQGNT 166
Query: 502 S---DEKLTMLVKKHFDLRPKNIIKMLNLLRPIYKKTSVYGHFGRKEPEFTWELTDK-AE 557
+E LR +Y+ Y +L AE
Sbjct: 167 DDYFEE-----------------------LRDLYQ---TYHVLVG-------DLIKFSAE 193
Query: 558 VLKN------SADFVIAD-INLSQWGRKEIEIAETEMFSLISIREEFVKSKPLKGARISG 610
L A+ V +N+ +W + + I I S PL
Sbjct: 194 TLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI------SCPL------- 240
Query: 611 SIHMTIQTAVLIETLKCLG---AEVRWSSCNIYSTQDH-----AAAAIASKGIPVFAFKG 662
I + Q A + T K LG E+R H A AIA
Sbjct: 241 -IGVI-QLAHYVVTAKLLGFTPGELRSYLK---GATGHSQGLVTAVAIAE---------- 285
Query: 663 ESISDYWE-FNHRIFDWPGNSNTEQANMILDDGGDATFLLHLGAQAENNISILSNPCSEE 721
+D WE F + T L +G + S P S
Sbjct: 286 ---TDSWESFF------------VSVRKAI------TVLFFIGVRCYEAYPNTSLPPSIL 324
Query: 722 EVCLFKSIKNKLKIDSKWYSSRLKQIKGVT-EETTTGVYRLRRMFKEGK-LSFPAINVND 779
E S++N + S + I +T E+ V + GK + +N
Sbjct: 325 E----DSLENNEGV-----PSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAK 375
Query: 780 S--VT---KSKFDNLYGCRESLIDGIKRATDVMIAGKIAVIIGYGDVGKGSAQAMRALSA 834
+ V+ +S LYG +L R K G Q+ R +
Sbjct: 376 NLVVSGPPQS----LYGLNLTL-----R--------KAK-------APSGLDQS-RIPFS 410
Query: 835 Q---VWIIEIDPICA------LQAAMEGFL----VVTMEYAKKYGDIFVTCTGNYHVITH 881
+ + P+ + L A + + + K I V Y
Sbjct: 411 ERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV-----YDTFDG 465
Query: 882 DHMRDMKDQAIVCNIGHFDNEIEVEKLKKYKWENI-KPQVDHII-F-PDGKKIILLAEGR 938
+R + +I I D I + KWE + + HI+ F P G + G
Sbjct: 466 SDLRVLSG-SISERI--VD-CIIRLPV---KWETTTQFKATHILDFGPGGASGL----GV 514
Query: 939 LVNLGC-GTG 947
L + GTG
Sbjct: 515 LTHRNKDGTG 524
Score = 59.7 bits (144), Expect = 5e-09
Identities = 93/619 (15%), Positives = 167/619 (26%), Gaps = 285/619 (46%)
Query: 17 LHC-AINFPSS--IKLLKLKGVVLI--------------AHPHPLFGGTMDNKVVQTLVR 59
+H A L+K K ++ LF + +
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNA-----Q 155
Query: 60 VMLSLGYISIRMNFRGVGASSGTYDSGNGETDDMEILLRYIQKKYPYL--PIILAGFSFG 117
++ G G G + ++ E LR + + Y L +I
Sbjct: 156 LVAIFG---------GQGNTDDYFE---------E--LRDLYQTYHVLVGDLI------- 188
Query: 118 TFVQAKLQKRLDKEISIKILILISVAVKKWLIPEVPKNTIIIHGELDEIIPLKDVFLWAN 177
F L + + + + + + + +WL E P NT P KD +L +
Sbjct: 189 KFSAETLSELIRTTLDAEKVFTQGLNILEWL--ENPSNT-----------PDKD-YLLSI 234
Query: 178 PLDIPVVVIPESVSEGHPDKIADQISDAILDEIFLK-------DLKARVAAETLCNNNLI 230
P+ P++ + Q++ + + K +L++ + T + L+
Sbjct: 235 PISCPLIGVI-------------QLAHYV---VTAKLLGFTPGELRSYLKGATGHSQGLV 278
Query: 231 V---LSGEITTDANIDYVNIVRKTIKD---IGYNNIDYGIDYKSCAVLLIYNKQSLD--- 281
++ + + + VRK I IG Y SL
Sbjct: 279 TAVAIAETDSWE---SFFVSVRKAITVLFFIG------------VRCYEAYPNTSLPPSI 323
Query: 282 IAQGVNEGEGLNFDQGAGDQGLMFGYACDETPELMPSAIYYSHLIVK--RQSELRK---- 335
+ + EG P M L + Q +++
Sbjct: 324 LEDSLENNEG--------------------VPSPM--------LSISNLTQEQVQDYVNK 355
Query: 336 -NGNLPWLRPDAKSQVTLRYDNGKPVAIDTIVLSTQHDPEIPYRSIKEAAIEEIIRPIIP 394
N +LP + +++L NG
Sbjct: 356 TNSHLP---AGKQVEISLV--NG------------------------------------A 374
Query: 395 KNLLKNTRYLINPTGRFVIGGPKGD-CGLTG--RKIIVDTYGGAAPHGGGAFSGKDPSKI 451
KN V+ GP GL RK AP SG D S+I
Sbjct: 375 KN--------------LVVSGPPQSLYGLNLTLRKA-------KAP------SGLDQSRI 407
Query: 452 ---DRSAAYVGRYI-------------AKNIVAANLAKRCQIQISYAIGVAKPTSIMVTS 495
+R + R++ A +++ +L K + + AK I V
Sbjct: 408 PFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKN-NVSFN-----AKDIQIPVYD 461
Query: 496 FGSGKISDEKLTMLVKKHFDLR------PKNIIKMLNLLRPIYKKTSVYGHFGRKEPEFT 549
G DLR + I+ + + P+
Sbjct: 462 TFDGS--------------DLRVLSGSISERIVDCI-IRLPVK----------------- 489
Query: 550 WELTDKAE---VLKNSADF 565
WE T + + +L DF
Sbjct: 490 WETTTQFKATHIL----DF 504
Score = 59.3 bits (143), Expect = 6e-09
Identities = 50/288 (17%), Positives = 85/288 (29%), Gaps = 112/288 (38%)
Query: 16 ILHCAINFPSSIKLLKLKGVVLIAHPHPLFGGTMDNKVVQTLVRVMLSLGYISIRMNFRG 75
IL IN P ++ + FGG + IR N+
Sbjct: 1661 ILDIVINNPVNLTIH--------------FGGEKGKR----------------IRENY-- 1688
Query: 76 VGASSGTYDSGNGETDDMEILLRYIQKKYPYLPIILAGFSFG--------T-FVQ-AKLQ 125
S+ +++ E + + I + ++F T F Q A
Sbjct: 1689 ---SAMIFETIVDGKLKTEKIFKEINEH-------STSYTFRSEKGLLSATQFTQPA--- 1735
Query: 126 KRLDKEISIKILILISVAV----KKWLIPEVPKNTIII-H--GE------LDEIIPLKD- 171
L L+ A K + +P + H GE L +++ ++
Sbjct: 1736 -----------LTLMEKAAFEDLKSKGL--IPADATFAGHSLGEYAALASLADVMSIESL 1782
Query: 172 ---VFL------WANPLDIPVVVIPESVSEGHPDKIADQISDAILDEIFLKDLKARVAAE 222
VF A P D + + +P ++A S L + RV
Sbjct: 1783 VEVVFYRGMTMQVAVPRD-ELGRSNYGMIAINPGRVAASFSQEALQYVV-----ERVGKR 1836
Query: 223 T--LC---NNNL----IVLSGEITTDANIDYVNIVRKTIKDIGYNNID 261
T L N N+ V +G++ +D V + I ID
Sbjct: 1837 TGWLVEIVNYNVENQQYVAAGDL---RALDTVT---NVLNFIKLQKID 1878
Score = 42.0 bits (98), Expect = 0.001
Identities = 66/357 (18%), Positives = 116/357 (32%), Gaps = 144/357 (40%)
Query: 683 NTEQANMILDDGGDATFLLHLGAQAENNISIL----SNPCSEEEVCLF-----KSIK--- 730
++ A + + D F G SIL +NP F K I+
Sbjct: 1638 TSKAAQDVWNRA-DNHFKDTYG------FSILDIVINNP--VNLTIHFGGEKGKRIRENY 1688
Query: 731 NKLKIDSKW--YSSRLKQIKGVTEETTTGVYRLRRMFK--EGKLS---F--PAINVNDSV 781
+ + ++ K K + E +T+ Y F+ +G LS F PA+ + +
Sbjct: 1689 SAMIFETIVDGKLKTEKIFKEINEHSTS--Y----TFRSEKGLLSATQFTQPALTL---M 1739
Query: 782 TKSKFDNLYGCRESLIDGIKRATDVMIAG--KIAVIIG-YGDVGKGSAQAMRALSAQVWI 838
K+ F++L + G+ A AG +G Y AL++
Sbjct: 1740 EKAAFEDL---KS---KGLIPADATF-AGHS-----LGEYA-----------ALAS---- 1772
Query: 839 IEIDPICA----LQAAMEGFLV----VTMEYAKKYGDIFVTCTGNYHVITHDHMRDMKDQ 890
A +++ +E +V +TM+ A ++ NY M
Sbjct: 1773 ------LADVMSIESLVE--VVFYRGMTMQVAVPRDEL---GRSNY---------GM--- 1809
Query: 891 AIVCNIGHFDNEIEVEKLKKYKWENIKPQVDHIIFPDGKKIILLAEGRLVNLGCGTGHPS 950
I N G E L+ V+ + GK+ L E +VN
Sbjct: 1810 -IAINPGRVAASFSQEALQYV--------VERV----GKRTGWLVE--IVNYNV------ 1848
Query: 951 YVMSSSFANQTLAQI----ELFNNTSNYPIGIYTLPKILDE-KVARLQLKKLNVQLS 1002
NQ Q +L + T+ +L+ K+ ++ + +L LS
Sbjct: 1849 -------ENQ---QYVAAGDL--------RALDTVTNVLNFIKLQKIDIIELQKSLS 1887
Score = 41.6 bits (97), Expect = 0.002
Identities = 63/378 (16%), Positives = 100/378 (26%), Gaps = 150/378 (39%)
Query: 557 EVLKNSADFVIADINLSQWGRKEIEIAETEMFSLISIREEFVKSKPLKGARISGSIHMTI 616
++ K S D+ W R + +T FS++ I V + P ++ +IH
Sbjct: 1634 DLYKTSK--AAQDV----WNRADNHFKDTYGFSILDI----VINNP-----VNLTIHFGG 1678
Query: 617 QTAVLIETLKCLGAEVRWSSCNIYSTQDHAAAAIAS-KGIPVFAFKGESISDYWEFNHRI 675
+ G +R YS K +F E + Y
Sbjct: 1679 EK----------GKRIR----ENYSAMIFETIVDGKLKTEKIFKEINEHSTSY------T 1718
Query: 676 FDWPGN-----SNTEQANMILDDGGDATFLLHLGAQAENNISILSNPCSEEEVCLFKSIK 730
F T Q A L+ E F+ +K
Sbjct: 1719 FRSEKGLLSATQFT-QP---------ALTLM--------------------EKAAFEDLK 1748
Query: 731 NKLKIDSKW---------YSSRLKQIKGV-TEETTTGVYRLRRMFKEGKLSFPAINVNDS 780
+K I + Y++ L + V + E+ V R G A+ D
Sbjct: 1749 SKGLIPADATFAGHSLGEYAA-LASLADVMSIESLVEVVFYR-----GMTMQVAVP-RDE 1801
Query: 781 VTKSKFDNLYGCRESLIDGIKRATDVMIAGKIAVIIGYGDVGKGSAQAMRALSAQVWIIE 840
+ +S YG MIA I G V +Q
Sbjct: 1802 LGRSN----YG---------------MIA------INPGRVAASFSQE-----------A 1825
Query: 841 IDPICALQAAMEGFLVVTMEYAKKYGDIFVTCTGNYHVITHDHMRDMKDQAIVCNIGHFD 900
+ + G+LV E NY+V ++Q V G
Sbjct: 1826 LQYVVERVGKRTGWLV---EIV------------NYNV---------ENQQYVAA-GDLR 1860
Query: 901 N-EIEVEKLKKYKWENIK 917
+ L K + I
Sbjct: 1861 ALDTVTNVLNFIKLQKID 1878
Score = 31.6 bits (71), Expect = 1.9
Identities = 57/362 (15%), Positives = 101/362 (27%), Gaps = 152/362 (41%)
Query: 296 QGAGDQGLMFGYACDETPELMPSAIYYSHLIVKRQSELRKNGNLPWLRPDAKSQVTLRYD 355
QG+ +QG M G +L Y + + ++ W R D + T +
Sbjct: 1624 QGSQEQG-M-GM------DL-----YKTSKAAQ---DV-------WNRADNHFKDTYGF- 1659
Query: 356 NGKPVAIDTIVLS-----TQHDPEIPYRSIKE---AAIEEIIR--PIIPKNLLKNTRYLI 405
+I IV++ T H + I+E A I E I + + + K I
Sbjct: 1660 -----SILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKE----I 1710
Query: 406 NPTGRFVI-GGPKGDCGLT---------------------GRKIIVDTYGGAAPH--G-- 439
N KG T G T+ G H G
Sbjct: 1711 NEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAG---HSLGEY 1767
Query: 440 ------GGAFSGKDPSKI--DRSAAYVGRYIAKNIVAANLAKRCQIQIS-YAIGVAKPTS 490
S + ++ R G + R ++ S Y + P
Sbjct: 1768 AALASLADVMSIESLVEVVFYR-----GMTM------QVAVPRDELGRSNYGMIAINPGR 1816
Query: 491 IMVTSFGSGKISDEKLTMLVKKHFDLRPKNIIKMLNLLRPIYKKTSVYGHFGRKEPEFTW 550
+ + S E L +V++ + K+T
Sbjct: 1817 VAAS------FSQEALQYVVER------------------VGKRTG-------------- 1838
Query: 551 ELTDKAEVLK----NSAD--FVIA-DIN--------LSQWGRKEIEIAE-TEMFSLISIR 594
+++ N + +V A D+ L+ ++I+I E + SL +
Sbjct: 1839 ------WLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVE 1892
Query: 595 EE 596
Sbjct: 1893 GH 1894
Score = 30.4 bits (68), Expect = 4.3
Identities = 18/114 (15%), Positives = 42/114 (36%), Gaps = 24/114 (21%)
Query: 13 SVG---ILHC---AINFPSSIKLLKLKGVVLIAHPHPLFGGTMDNKVVQTLV--RVMLSL 64
S+G L ++ S ++++ +G + + P N + + RV S
Sbjct: 1763 SLGEYAALASLADVMSIESLVEVVFYRG-MTMQVAVPRDELGRSNYGMIAINPGRVAASF 1821
Query: 65 GYISIRMNFRGVGASSGT------YDSGN------GETDDMEIL---LRYIQKK 103
+++ VG +G Y+ N G+ ++ + L +I+ +
Sbjct: 1822 SQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQ 1875
>3ksr_A Putative serine hydrolase; catalytic triad, structural genomics,
JOIN for structural genomics, JCSG; 2.69A {Xanthomonas
campestris PV}
Length = 290
Score = 59.5 bits (144), Expect = 1e-09
Identities = 38/213 (17%), Positives = 69/213 (32%), Gaps = 58/213 (27%)
Query: 30 LKLKGVVLIAHPHPL------FGGTMDNKVVQTLVRVMLSLGYISIRMNFRGVGASSGTY 83
+L G +L P +GG+ + +V R + LG I + + RG +
Sbjct: 16 DELSGTLLTPTGMPGVLFVHGWGGSQHHSLV--RAREAVGLGCICMTFDLRGHEGYASMR 73
Query: 84 D--SGNGETDDMEILLRYIQKKYPYL---PIILAGFSFGTFVQAKLQKRLDKEISIKILI 138
+ DD++ + PY+ I + G S+G ++ A L + ++ L
Sbjct: 74 QSVTRAQNLDDIKAAYDQLASL-PYVDAHSIAVVGLSYGGYLSALLTRERP----VEWLA 128
Query: 139 LISVAVKKWLIPEVPKNTI---------------------------------IIHGELDE 165
L S A+ K + PK ++ ++ E D
Sbjct: 129 LRSPALYKDAHWDQPKVSLNADPDLMDYRRRALAPGDNLALAACAQYKGDVLLVEAENDV 188
Query: 166 IIPLKD----VFLWANPLDIPVVVIPESVSEGH 194
I+P + N + VI H
Sbjct: 189 IVPHPVMRNYADAFTNARSLTSRVIAG---ADH 218
>1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 1.60A {Thermus thermophilus} SCOP:
c.69.1.27
Length = 238
Score = 54.7 bits (131), Expect = 3e-08
Identities = 40/225 (17%), Positives = 70/225 (31%), Gaps = 49/225 (21%)
Query: 33 KGVVLIAHPHPLFGGTMDNKVVQTLVRVMLSLGYISIRMNFRGVGASSGTYDSG------ 86
K ++L H G + + L+ G++ + + G G S
Sbjct: 24 KALLLALH-----GLQGSKEHILALLPGYAERGFLLLAFDAPRHGEREGPPPSSKSPRYV 78
Query: 87 ----NGETDDMEILLRYIQK--KYPYLPIILAGFSFGTFVQAKLQKRLDKEISIKILILI 140
E R ++ + LP+ LAG S G FV L + + I
Sbjct: 79 EEVYRVALGFKEEARRVAEEAERRFGLPLFLAGGSLGAFVAHLLLAEGFRPRGVLAFIGS 138
Query: 141 SV--AVKKWLIPEVP-------------------KNTIIIHGELDEIIPLKDVF-----L 174
+ + + E P + +HG D I+PL + L
Sbjct: 139 GFPMKLPQGQVVEDPGVLALYQAPPATRGEAYGGVPLLHLHGSRDHIVPLARMEKTLEAL 198
Query: 175 WANPLDIPVVVIPESVSEGHPDKIADQISDAILDEIFLKD-LKAR 218
+ + + E EG + ++ L FL+ L+AR
Sbjct: 199 RPHYPEGRLARFVE---EGAGHTLTPLMARVGLA--FLEHWLEAR 238
>2rau_A Putative esterase; NP_343859.1, putative lipase, structural
genomics, joint CEN structural genomics, JCSG; HET: PG4
UNL; 1.85A {Sulfolobus solfataricus P2}
Length = 354
Score = 51.5 bits (122), Expect = 7e-07
Identities = 18/116 (15%), Positives = 40/116 (34%), Gaps = 12/116 (10%)
Query: 36 VLIAHPHPLFGGTMDNKVVQTLVRVMLSLGYISIRMNFRGVGASSGTYDSGNGET----- 90
++ + + D + +++V + G+ +++R D T
Sbjct: 66 LVTISWNGVHYTIPDYR--KSIVLYLARNGFNVYTIDYRTHYVPPFLKDRQLSFTANWGW 123
Query: 91 ----DDMEILLRYIQKKYPYLPIILAGFSFGTFVQAK-LQKRLDKEISIKILILIS 141
D++ ++ +I++ I LAG SFG +I IL+
Sbjct: 124 STWISDIKEVVSFIKRDSGQERIYLAGESFGGIAALNYSSLYWKNDIKGLILLDGG 179
>1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13
Length = 305
Score = 50.8 bits (121), Expect = 9e-07
Identities = 29/166 (17%), Positives = 58/166 (34%), Gaps = 15/166 (9%)
Query: 17 LHCAINFPSSIKLLKLKGVVLIAHPHPLFGGTMDNKVVQTLVRVMLSLGYISIRMNFRG- 75
LH P + +LIA F MD+ L + + G+ R +
Sbjct: 20 LHVWETPPKE-NVPFKNNTILIASG---FARRMDH--FAGLAEYLSTNGFHVFRYDSLHH 73
Query: 76 VGASSGTYDSGN--GETDDMEILLRYIQKKYPYLPIILAGFSFGTFVQAKLQKRLDKEIS 133
VG SSG+ D + + + ++Q K I L S V ++ L+
Sbjct: 74 VGLSSGSIDEFTMTTGKNSLCTVYHWLQTKGT-QNIGLIAASLSARVAYEVISDLELSFL 132
Query: 134 IKILILISVA-----VKKWLIPEVPKNTIIIHGELDEIIPLKDVFL 174
I + ++++ + +P + + + + +VF+
Sbjct: 133 ITAVGVVNLRDTLEKALGFDYLSLPIDELPNDLDFEGHKLGSEVFV 178
>2o2g_A Dienelactone hydrolase; YP_324580.1, structural genomics, JO center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.92A {Anabaena variabilis}
Length = 223
Score = 46.4 bits (110), Expect = 2e-05
Identities = 27/187 (14%), Positives = 59/187 (31%), Gaps = 20/187 (10%)
Query: 33 KGVVLIAHPHPLFGGTMDNKVVQTLVRVMLSLGYISIRMNFRGVGASSGTYDSGNGETD- 91
G+VL AH G + + + + V+ G ++ ++ + + D
Sbjct: 35 TGIVLFAHG---SGSSRYSPRNRYVAEVLQQAGLATLLIDLLTQEEEEIDLRTRHLRFDI 91
Query: 92 -----DMEILLRYIQKKY--PYLPIILAGFSFGTFVQAKLQKRLDKEISIKILI--LISV 142
+ ++ +L + G S G + + + +
Sbjct: 92 GLLASRLVGATDWLTHNPDTQHLKVGYFGASTGGGAALVAAAERPETVQAVVSRGGRPDL 151
Query: 143 AVKKWLIPEVPKNTIIIHGEL-DEIIPLKDVFLWANPLDIPVVVIPESV----SEGHPDK 197
A +P V T++I G +I + + L +V+IP + G
Sbjct: 152 APS--ALPHVKAPTLLIVGGYDLPVIAMNEDALEQLQTSKRLVIIPRASHLFEEPGALTA 209
Query: 198 IADQISD 204
+A S+
Sbjct: 210 VAQLASE 216
>3hju_A Monoglyceride lipase; alpha/beta hydrolase, hydrolase, serine
esterase; 2.20A {Homo sapiens}
Length = 342
Score = 46.6 bits (111), Expect = 3e-05
Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 18/96 (18%)
Query: 33 KGVVLIAHPHPLFG-----GTMDNKVVQTLVRVMLSLGYISIRMNFRGVGASSGT---YD 84
K ++ ++H G G + L R+++ L + + G G S G
Sbjct: 60 KALIFVSH-----GAGEHSGRYEE-----LARMLMGLDLLVFAHDHVGHGQSEGERMVVS 109
Query: 85 SGNGETDDMEILLRYIQKKYPYLPIILAGFSFGTFV 120
+ D+ + +QK YP LP+ L G S G +
Sbjct: 110 DFHVFVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAI 145
>3pe6_A Monoglyceride lipase; alpha-beta hydrolase fold,
2-arachidonyl-glycerol, M associated, hydrolase,
hydrolase-hydrolase inhibitor comple; HET: ZYH; 1.35A
{Homo sapiens} PDB: 3jw8_A 3jwe_A*
Length = 303
Score = 45.7 bits (109), Expect = 4e-05
Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 18/96 (18%)
Query: 33 KGVVLIAHPHPLFG-----GTMDNKVVQTLVRVMLSLGYISIRMNFRGVGASSGT---YD 84
K ++ ++H G G + L R+++ L + + G G S G
Sbjct: 42 KALIFVSH-----GAGEHSGRYEE-----LARMLMGLDLLVFAHDHVGHGQSEGERMVVS 91
Query: 85 SGNGETDDMEILLRYIQKKYPYLPIILAGFSFGTFV 120
+ D+ + +QK YP LP+ L G S G +
Sbjct: 92 DFHVFVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAI 127
>3llc_A Putative hydrolase; structural genomics, joint center for ST
genomics, JCSG, protein structure initiative, PSI-2;
HET: MSE PG4; 1.80A {Agrobacterium vitis}
Length = 270
Score = 45.1 bits (106), Expect = 5e-05
Identities = 21/162 (12%), Positives = 54/162 (33%), Gaps = 5/162 (3%)
Query: 45 FGGTMDNKVVQTLVRVMLSLGYISIRMNFRGVGASSGTYDSGN--GETDDMEILLRYIQK 102
+ M + + SLG +IR ++ G GAS G + G ++ +L + +
Sbjct: 46 YRSDMTGTKALEMDDLAASLGVGAIRFDYSGHGASGGAFRDGTISRWLEEALAVLDHFKP 105
Query: 103 KYPYLPIILAGFSFGTFVQAKLQKRLDKEISIKILILISVAVKKWLIPEVPKNTIIIHGE 162
+ I++ G +Q+ + + + + + ++ E
Sbjct: 106 EK---AILVGSSMGGWIALRLIQELKARHDNPTQVSGMVLIAPAPDFTSDLIEPLLGDRE 162
Query: 163 LDEIIPLKDVFLWANPLDIPVVVIPESVSEGHPDKIADQISD 204
E+ + P + + +G +++ + D
Sbjct: 163 RAELAENGYFEEVSEYSPEPNIFTRALMEDGRANRVMAGMID 204
>2r8b_A AGR_C_4453P, uncharacterized protein ATU2452; APC6088,
agrobacterium tumefaciens STR. C58 structural genomics,
PSI-2; 2.56A {Agrobacterium tumefaciens str} SCOP:
c.69.1.14
Length = 251
Score = 44.6 bits (105), Expect = 8e-05
Identities = 33/171 (19%), Positives = 60/171 (35%), Gaps = 31/171 (18%)
Query: 66 YISIRMNFRGVGASSGTYDSGNGETDDMEI---------LLRYIQKKYPYLPIILAGFSF 116
+S + GA+ +G G D +++ ++ ++ Y P+I GFS
Sbjct: 91 ILSPVGDVSEHGAARFFRRTGEGVYDMVDLERATGKMADFIKANREHYQAGPVIGLGFSN 150
Query: 117 GTFVQAKLQKRLDKEISIKILILIS--VAVKKWLIPEVPKNTI-IIHGELDEIIPLKDV- 172
G + A + + +L+ + + + P P + I GE D I P++
Sbjct: 151 GANILANVLIEQPE--LFDAAVLMHPLIPFEPKISPAKPTRRVLITAGERDPICPVQLTK 208
Query: 173 ----FLWANPLDIPVVVIPESVSEGHPDKIADQISDAILDEI--FLKDLKA 217
L A + V P GH +I +D + FL
Sbjct: 209 ALEESLKAQGGTVETVWHP----GGH------EIRSGEIDAVRGFLAAYGG 249
>2q0x_A Protein DUF1749, uncharacterized protein; alpha/beta hydrolase
fold, structural genomics, structural G of pathogenic
protozoa consortium; 2.20A {Trypanosoma brucei}
Length = 335
Score = 42.0 bits (98), Expect = 8e-04
Identities = 18/120 (15%), Positives = 41/120 (34%), Gaps = 14/120 (11%)
Query: 63 SLGYISIRMNFRGVGASSGTYDSGNGETDDMEILLRYIQKKYPYLPIILAGFSFGTFVQA 122
+ + + G G +D +D++ L+ + + + + L S GT +
Sbjct: 69 AFVQVEVPSGKIGSGPQDHAHD-----AEDVDDLIGILLRDHCMNEVALFATSTGTQLVF 123
Query: 123 KLQKRLDKEISIKILILISVAV---KKWLIPEVPKNTI------IIHGELDEIIPLKDVF 173
+L + + SI +IL V PE + G ++ + + +
Sbjct: 124 ELLENSAHKSSITRVILHGVVCDPENPLFTPEGCAARKEHVEKLMAEGRGEDSLAMLKHY 183
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Length = 286
Score = 40.0 bits (93), Expect = 0.002
Identities = 11/75 (14%), Positives = 27/75 (36%)
Query: 799 GIKRATDVMIAGKIAVIIGYGDVGKGSAQAMRALSAQVWIIEIDPICALQAAMEGFLVVT 858
G+ + + + +A++ G +G + + + + IEI P + G +
Sbjct: 1 GMVKDKNDVGPKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLTD 60
Query: 859 MEYAKKYGDIFVTCT 873
+ D+ V
Sbjct: 61 GDGWIDEADVVVLAL 75
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343,
PSI-2, structure initiative; HET: MSE NAP; 2.79A
{Bacillus subtilis}
Length = 300
Score = 40.2 bits (94), Expect = 0.003
Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 4/93 (4%)
Query: 804 TDVMIAGKIAVIIGYGDVGKGSAQAMRALSAQVWIIEIDPICALQAAMEGFLVVTMEYAK 863
TD I G ++G G G A+ AL A V + + G + + K
Sbjct: 151 TDYTIHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITEMGLVPFHTDELK 210
Query: 864 KY---GDIFVTCTGNYHVITHDHMRDMKDQAIV 893
++ DI + T ++ + M + ++
Sbjct: 211 EHVKDIDICIN-TIPSMILNQTVLSSMTPKTLI 242
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB;
TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus
rimd 2210633}
Length = 183
Score = 39.0 bits (91), Expect = 0.003
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 8/56 (14%)
Query: 813 AVIIGYGDVGKGSAQAMRA-LSAQVWIIEIDPICALQAAMEGFLVVTMEYAKKYGD 867
+I+G G +G G+ +RA IEI A Q EG V+ GD
Sbjct: 42 VLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVI-------SGD 90
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center
for structural genomics of infec diseases, csgid; HET:
NAD; 2.36A {Salmonella enterica subsp}
Length = 381
Score = 40.0 bits (94), Expect = 0.004
Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 14/110 (12%)
Query: 795 SLIDGIKRATDVMIAGKIAVIIGYGDVGKGSAQAMRALSAQVWIIEIDPICALQAAMEGF 854
S + + + + I+G G+VG + AL + + DP A +
Sbjct: 104 SALLMLAERDGFSLRDRTIGIVGVGNVGSRLQTRLEALGIRT--LLCDPP--RAARGDEG 159
Query: 855 LVVTMEYAKKYGDIFVTC------TGNY---HVITHDHMRDMKDQAIVCN 895
T++ + D +T G Y H+ +R +K AI+ N
Sbjct: 160 DFRTLDELVQEAD-VLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILIN 208
>3b5e_A MLL8374 protein; NP_108484.1, carboxylesterase, structural
genomics, joint CE structural genomics, JCSG, protein
structure initiative; 1.75A {Mesorhizobium loti} SCOP:
c.69.1.14
Length = 223
Score = 39.1 bits (91), Expect = 0.004
Identities = 15/99 (15%), Positives = 28/99 (28%), Gaps = 3/99 (3%)
Query: 73 FRGVGASSGTYDSGNGETDDMEILLRYIQKKY--PYLPIILAGFSFGTFVQAKLQKRLDK 130
F + + S ET K++ G+S G + + L
Sbjct: 75 FERIDPTRFEQKSILAETAAFAAFTNEAAKRHGLNLDHATFLGYSNGANLVSSLMLLHPG 134
Query: 131 EISIKILILISVAVKKWLIPEVPKNTI-IIHGELDEIIP 168
+ + L+ + ++ II G DE
Sbjct: 135 IVRLAALLRPMPVLDHVPATDLAGIRTLIIAGAADETYG 173
>2qs9_A Retinoblastoma-binding protein 9; B5T overexpressed gene protein,
BOG, RBBP9, RBBP10, HR2978, NESG, structural genomics,
PSI-2; 1.72A {Homo sapiens}
Length = 194
Score = 38.6 bits (89), Expect = 0.004
Identities = 13/101 (12%), Positives = 26/101 (25%), Gaps = 17/101 (16%)
Query: 108 PIILAGFSFGTFVQAKL--QKRLDKEISIKILILISVAVKKWL------------IPEVP 153
I+ G S G + R+ + + + I
Sbjct: 68 KTIIIGHSSGAIAAMRYAETHRVYAIVLVSAYTSDLGDENERASGYFTRPWQWEKIKANC 127
Query: 154 KNTIIIHGELDEIIPLKDVFLWANPLDIPVVVIPESVSEGH 194
+ D +P K+ A+ L+ + + GH
Sbjct: 128 PYIVQFGSTDDPFLPWKEQQEVADRLETKLHKFTDC---GH 165
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann
fold, transport, cell cycle, transferrin, flavoprotein,
alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB:
2vq3_A*
Length = 215
Score = 38.4 bits (89), Expect = 0.006
Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 1/89 (1%)
Query: 811 KIAVIIGYGDVGKGSAQAMRALSAQVWIIEIDPICALQAAMEGFLVVTMEYAKKYGDIFV 870
K+ I+G GD + A + +V + +P + V E A ++
Sbjct: 30 KVG-ILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQVTFQEEAVSSPEVIF 88
Query: 871 TCTGNYHVITHDHMRDMKDQAIVCNIGHF 899
H + + D I+ ++ +
Sbjct: 89 VAVFREHYSSLCSLSDQLAGKILVDVSNP 117
>2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase;
alpha/beta hydrolase, META-cleavage pathway; 2.1A
{Arthrobacter nicotinovorans} SCOP: c.69.1.41
Length = 386
Score = 38.8 bits (90), Expect = 0.007
Identities = 11/67 (16%), Positives = 18/67 (26%), Gaps = 10/67 (14%)
Query: 57 LVRVMLSLGYISIRMNFRGVGASSGTYDSGNGETDDMEILLRYIQKKYPYLP------II 110
+ ++L G + + G G D E + L I
Sbjct: 171 MENLVLDRGMATATFDGPGQGEMFEYK----RIAGDYEKYTSAVVDLLTKLEAIRNDAIG 226
Query: 111 LAGFSFG 117
+ G S G
Sbjct: 227 VLGRSLG 233
>2fx5_A Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pseudomonas
mendocina}
Length = 258
Score = 38.1 bits (88), Expect = 0.009
Identities = 18/158 (11%), Positives = 36/158 (22%), Gaps = 19/158 (12%)
Query: 35 VVLIAHPHPLFGGTMDNKVVQTLVRVMLSLGYISIRMNFRGVGASSGTYDSGNGETDDME 94
V+L + G L+ S G++ G + + +
Sbjct: 51 VILWGN-----GTGAGPSTYAGLLSHWASHGFVVAAAETSNAGTGREMLACLDYLVREND 105
Query: 95 ILLRYIQKKYPYLPIILAGFSFGTFVQAKLQKRLDKEISIKILILIS-------VAVKKW 147
K + +G S G + ++ I
Sbjct: 106 TPYGTYSGKLNTGRVGTSGHSQGGGGSIMAGQD----TRVRTTAPIQPYTLGLGHDSASQ 161
Query: 148 LIPEVPKNTIIIHGELDEIIPLKDVFLWA-NPLDIPVV 184
+ P ++ G D I ++PV
Sbjct: 162 RRQQGP--MFLMSGGGDTIAFPYLNAQPVYRRANVPVF 197
>3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad,
rotation; 1.60A {Lactobacillus rhamnosus} PDB: 3dlt_A
3dyi_A 3dyv_A 3e1g_A
Length = 251
Score = 37.9 bits (88), Expect = 0.012
Identities = 32/239 (13%), Positives = 64/239 (26%), Gaps = 69/239 (28%)
Query: 33 KGVVLIAHPHPLFGGTMDNKVVQTLVRVMLSLGYISIRMNFRGVGASSG----TYDSGNG 88
GVVL+ H G D + + R + GY F G G T + +
Sbjct: 23 TGVVLL---HAYTGSPND---MNFMARALQRSGYGVYVPLFSGHGTVEPLDILTKGNPDI 76
Query: 89 ETDDMEILLRYIQKKYPYLPIILAGFSFGTFVQAKLQKRLDKEISIKILILISVAVKKWL 148
+ + ++ KY + + G S G K + L + + + K L
Sbjct: 77 WWAESSAAVAHMTAKYA--KVFVFGLSLGGIFAMKALETLPGITAGGVFSSPILPGKHHL 134
Query: 149 IP---------------------------------------------EVPKNTIIIHGEL 163
+P V + T I
Sbjct: 135 VPGFLKYAEYMNRLAGKSDESTQILAYLPGQLAAIDQFATTVAADLNLVKQPTFIGQAGQ 194
Query: 164 DEIIPLKDVFL----WANPLDIPVVVIPESVSEGH---PDKIADQISDAILDEIFLKDL 215
DE++ + + N + ++ H + + + ++ F++
Sbjct: 195 DELVDGRLAYQLRDALINAARVDFHWYDDA---KHVITVNSAHHALEEDVIA--FMQQE 248
>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET:
NAP; 2.20A {Rattus norvegicus}
Length = 201
Score = 37.3 bits (86), Expect = 0.014
Identities = 16/101 (15%), Positives = 28/101 (27%), Gaps = 5/101 (4%)
Query: 800 IKRATDVMIAGKIAVIIGYGDVGKGSAQAMRALSAQVWIIEIDPICALQAAMEGFLVVTM 859
+ + + I G GD GK M V +P G V+
Sbjct: 13 VDSSEKQGVVC----IFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ-VSSLLPRGAEVLCY 67
Query: 860 EYAKKYGDIFVTCTGNYHVITHDHMRDMKDQAIVCNIGHFD 900
A D+ V H + D ++ ++ +
Sbjct: 68 SEAASRSDVIVLAVHREHYDFLAELADSLKGRVLIDVSNNQ 108
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein
structure initiative; 2.20A {Lactobacillus plantarum}
Length = 324
Score = 37.6 bits (88), Expect = 0.015
Identities = 19/96 (19%), Positives = 33/96 (34%), Gaps = 9/96 (9%)
Query: 808 IAGKIAVIIGYGDVGKGSAQAMRALSAQVWIIEIDPICALQAAMEGFLVVTMEYAKKYGD 867
+ G+ +I G G +G+ A AL V + E A +
Sbjct: 135 LTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGH-PADHFHETVAFTATADALATAN 193
Query: 868 IFVTC------TGNYHVITHDHMRDMKDQAIVCNIG 897
V T +H+ + + + K Q ++ NIG
Sbjct: 194 FIVNALPLTPTT--HHLFSTELFQQTKQQPMLINIG 227
>3og9_A Protein YAHD A copper inducible hydrolase; alpha/beta hydrolase,
copper homeostasis, malic acid; 1.88A {Lactococcus
lactis subsp}
Length = 209
Score = 37.1 bits (86), Expect = 0.017
Identities = 25/176 (14%), Positives = 52/176 (29%), Gaps = 36/176 (20%)
Query: 66 YISIRMNFRGVGASSGTYDSGNGETDDMEI--------------LLRYIQKKY--PYLPI 109
+SIR G + G G + + +K+ +
Sbjct: 45 ILSIRGRINEQGVNRYFKLRGLGGFTKENFDLESLDEETDWLTDEVSLLAEKHDLDVHKM 104
Query: 110 ILAGFSFGTFVQAKLQKRLDKEISIKILILISVAVKKWLIPEVPKNT--IIIHGELDEII 167
I G+S G V + R KI+ + ++ + + + + D I+
Sbjct: 105 IAIGYSNGANVALNMFLRGKINFD-KIIAFHGMQLEDFEQTVQLDDKHVFLSYAPNDMIV 163
Query: 168 PLKDV-----FLWANPLDIPVVVIPESVSEGHPDKIADQISDAILDEI--FLKDLK 216
P K+ L + + + GH Q++ + +L + K
Sbjct: 164 PQKNFGDLKGDLEDSGCQLEIYESS----LGH------QLTQEEVLAAKKWLTETK 209
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase,
reversible interconversion of pyruvate INTO D-lactate;
1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4
c.23.12.1 PDB: 1j49_A* 2dld_A*
Length = 333
Score = 37.6 bits (88), Expect = 0.017
Identities = 19/93 (20%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Query: 808 IAGKIAVIIGYGDVGKGSAQAMRALSAQVWIIEIDPICALQAAMEGFLVVTMEYAKKYGD 867
+ ++ ++G G +G+ Q M A+V I D + +G+ V +++ K D
Sbjct: 144 VRDQVVGVVGTGHIGQVFMQIMEGFGAKV--ITYDIFRNPELEKKGYYVDSLDDLYKQAD 201
Query: 868 IFVT--C---TGNYHVITHDHMRDMKDQAIVCN 895
+ ++ N H+I + + MK ++ N
Sbjct: 202 V-ISLHVPDVPANVHMINDESIAKMKQDVVIVN 233
>4ao6_A Esterase; hydrolase, thermo label; 1.60A {Unidentified} PDB: 4ao7_A
4ao8_A
Length = 259
Score = 37.2 bits (85), Expect = 0.021
Identities = 26/163 (15%), Positives = 56/163 (34%), Gaps = 30/163 (18%)
Query: 35 VVLIAHPHPLFGGTMDNKVVQTLVRVMLSLGYISIRMNFRGVGASSGTYDSGNGETD--- 91
+VL+ H + ++ + ++++ G ++ ++ G G +
Sbjct: 58 LVLLGHG---GTTHKKVEYIEQVAKLLVGRGISAMAIDGPGHGERASVQAGREPTDVVGL 114
Query: 92 ------------------DMEILLRYIQKKYPYLPIILAGFSFGTFVQAKLQKRLDKEIS 133
D L +I+ + P G S GT + + DK I
Sbjct: 115 DAFPRMWHEGGGTAAVIADWAAALDFIEAEEGPRPTGWWGLSMGTMMGLPVTAS-DKRIK 173
Query: 134 IKILILISV--AVKKWLIPEVPKNTI---IIHGELDEIIPLKD 171
+ +L L+ V + L+ P+ T + DE++ L+
Sbjct: 174 VALLGLMGVEGVNGEDLVRLAPQVTCPVRYLLQWDDELVSLQS 216
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION
transporter, symporter, transport protein; HET: NAI;
2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A*
2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Length = 144
Score = 35.4 bits (82), Expect = 0.027
Identities = 19/125 (15%), Positives = 36/125 (28%), Gaps = 22/125 (17%)
Query: 814 VIIGYGDVGKGSAQAMRALSAQVWIIEIDPICALQAAMEGFLVVTM-----EYAKKYG-- 866
+IG G G + + + +V ++I+ A V G
Sbjct: 10 AVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIR 69
Query: 867 --DIFVTCTGNYH---VITHDHMRDMKDQAIVCNIGHFDNEIEVEKLKKYKWENIKPQVD 921
+ + G +T ++++ I N + L+K D
Sbjct: 70 NFEYVIVAIGANIQASTLTTLLLKELDIPNIWVKA---QNYYHHKVLEKIG-------AD 119
Query: 922 HIIFP 926
II P
Sbjct: 120 RIIHP 124
>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure,
structural genomics, NPPSFA; HET: MSE NAD; 2.12A
{Aquifex aeolicus VF5} PDB: 3kb6_A*
Length = 334
Score = 36.8 bits (86), Expect = 0.031
Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 8/93 (8%)
Query: 808 IAGKIAVIIGYGDVGKGSAQAMRALSAQVWIIEIDPICALQAAMEGFLVVTMEYAKKYGD 867
+ +IG G +G A A +V + D + +G + +++ K D
Sbjct: 139 LNRLTLGVIGTGRIGSRVAMYGLAFGMKV--LCYDVVKREDLKEKGCVYTSLDELLKESD 196
Query: 868 IFVTC-----TGNYHVITHDHMRDMKDQAIVCN 895
+ ++ +H+I + + MKD + N
Sbjct: 197 V-ISLHVPYTKETHHMINEERISLMKDGVYLIN 228
>1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta
hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP:
c.69.1.29 PDB: 1r1d_A* 4diu_A
Length = 247
Score = 36.3 bits (84), Expect = 0.032
Identities = 40/245 (16%), Positives = 76/245 (31%), Gaps = 78/245 (31%)
Query: 33 KGVVLIAHPHPLFGGTMDNKVVQTLVRVMLSLGYISIRMNFRGVGASSG--TYDSGNGET 90
+ V+L+ H G + D V+ L R + S GY ++G G + +
Sbjct: 17 RAVLLL---HGFTGNSAD---VRMLGRFLESKGYTCHAPIYKGHGVPPEELVHTGPDDWW 70
Query: 91 DDMEILLRYIQKKYPYLPIILAGFSFGTFVQAKLQKRLDKEISIKILILISVAVK----- 145
D+ +++ K Y I +AG S G KL + I+ ++ + +
Sbjct: 71 QDVMNGYEFLKNK-GYEKIAVAGLSLGGVFSLKLGYTVP----IEGIVTMCAPMYIKSEE 125
Query: 146 -------KWLIPEVPKN------------------------------------------T 156
++ + T
Sbjct: 126 TMYEGVLEYAREYKKREGKSEEQIEQEMEKFKQTPMKTLKALQELIADVRDHLDLIYAPT 185
Query: 157 IIIHGELDEIIPLKDVFLWANPLDIP---VVVIPESVSEGH---PDKIADQISDAILDEI 210
++ DE+I + N ++ P + +S GH D+ DQ+ + I
Sbjct: 186 FVVQARHDEMINPDSANIIYNEIESPVKQIKWYEQS---GHVITLDQEKDQLHEDIYA-- 240
Query: 211 FLKDL 215
FL+ L
Sbjct: 241 FLESL 245
>3bdv_A Uncharacterized protein DUF1234; DUF1234 family protein,
alpha/beta-hydrolases fold, structur genomics; HET: MSE;
1.66A {Pectobacterium atrosepticum SCRI1043}
Length = 191
Score = 35.7 bits (82), Expect = 0.034
Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 16/96 (16%)
Query: 108 PIILAGFSFGTFVQAKLQKRLDKEISIKILILISVAVKKWLIPEVPKN---------TII 158
P+IL G SFG + ++ + I ++ VA + + E+ T+
Sbjct: 75 PVILIGHSFGALAACHVVQQGQE----GIAGVMLVAPAEPMRFEIDDRIQASPLSVPTLT 130
Query: 159 IHGELDEIIPLKDVFLWANPLDIPVVVIPESVSEGH 194
D ++ WA D +V + E+ GH
Sbjct: 131 FASHNDPLMSFTRAQYWAQAWDSELVDVGEA---GH 163
>3fsg_A Alpha/beta superfamily hydrolase; PF00561, MCSG, PSI, PSI-2,
structural genomics, protein structure initiative,
midwest for structural genomics; 2.00A {Oenococcus oeni}
Length = 272
Score = 36.2 bits (84), Expect = 0.044
Identities = 11/77 (14%), Positives = 26/77 (33%), Gaps = 22/77 (28%)
Query: 151 EVPKNTIIIHGELDEIIPLKDVFLWANPLDIP---VVVIPESVSEGH------PDKIADQ 201
+ P I+ G D+++ ++ N +V++ + GH + +
Sbjct: 208 QFP--FKIMVGRNDQVVGYQEQLKLIN--HNENGEIVLLNRT---GHNLMIDQREAVGFH 260
Query: 202 ISDAILDEIFLKDLKAR 218
FL +L +
Sbjct: 261 FDL------FLDELNSN 271
>3fob_A Bromoperoxidase; structural genomics, IDP00046, bacillus ANT
peroxidase, oxidoreductase; 1.74A {Bacillus anthracis
str}
Length = 281
Score = 35.8 bits (83), Expect = 0.052
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 21/72 (29%)
Query: 152 VPKNTIIIHGELDEIIPLKDVFLWANPLDIP---VVVIPESVSEGH------PDKIADQI 202
+P T+IIHG+ D +P + + IP V +I H +
Sbjct: 222 IP--TLIIHGDSDATVPFEYSGKLTHEA-IPNSKVALIKGG---PHGLNATHAKEFN--- 272
Query: 203 SDAILDEIFLKD 214
+A+L FLKD
Sbjct: 273 -EALLL--FLKD 281
>2hdw_A Hypothetical protein PA2218; alpha/beta hydrolase fold, structural
genomics, PSI, structure initiative; 2.00A {Pseudomonas
aeruginosa}
Length = 367
Score = 35.8 bits (82), Expect = 0.058
Identities = 16/91 (17%), Positives = 31/91 (34%), Gaps = 15/91 (16%)
Query: 35 VVLIAHPHPLFGGTMDNKVVQTLV---RVMLSLGYISIRMNFRGVGASSGT---YDSGNG 88
++I P FG + Q+ + M G++++ + G S G S +
Sbjct: 98 AIVIGGP---FGAVKE----QSSGLYAQTMAERGFVTLAFDPSYTGESGGQPRNVASPDI 150
Query: 89 ETDDMEILLRYIQKKYPYLP--IILAGFSFG 117
T+D + +I I + G
Sbjct: 151 NTEDFSAAVDFISLLPEVNRERIGVIGICGW 181
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD,
tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A
{Pseudomonas aeruginosa}
Length = 380
Score = 35.7 bits (83), Expect = 0.062
Identities = 18/110 (16%), Positives = 39/110 (35%), Gaps = 14/110 (12%)
Query: 795 SLIDGIKRATDVMIAGKIAVIIGYGDVGKGSAQAMRALSAQVWIIEIDPICALQAAMEGF 854
+ + +A + ++G G VG + +R L +V + DP QA
Sbjct: 101 GCLLAMAEVRGADLAERTYGVVGAGQVGGRLVEVLRGLGWKV--LVCDPP--RQAREPDG 156
Query: 855 LVVTMEYAKKYGDIFVTC------TGNY---HVITHDHMRDMKDQAIVCN 895
V++E D ++ G + H++ + ++ + N
Sbjct: 157 EFVSLERLLAEAD-VISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVN 205
>3vis_A Esterase; alpha/beta-hydrolase fold, polyethylene terephthal
hydrolase; HET: PE4; 1.76A {Thermobifida alba}
Length = 306
Score = 35.5 bits (81), Expect = 0.069
Identities = 23/142 (16%), Positives = 47/142 (33%), Gaps = 22/142 (15%)
Query: 35 VVLIAHPHPLFGGTMDNKVVQTLVRVMLSLGYISIRMNFRGVGASSGTYDSGNGETDDME 94
+ I+ + GT + + L + S G++ I ++ T D + +
Sbjct: 98 AIAISPG---YTGTQSS--IAWLGERIASHGFVVIAIDTNT------TLDQPDSRARQLN 146
Query: 95 ILLRYIQKK-----YPYLP---IILAGFSFGTFVQAKLQKRLDKEISIKILILISVAVKK 146
L Y+ + + + G S G +L + +K I ++
Sbjct: 147 AALDYMLTDASSAVRNRIDASRLAVMGHSMGGGGTLRLASQ---RPDLKAAIPLTPWHLN 203
Query: 147 WLIPEVPKNTIIIHGELDEIIP 168
++ T+II E D I
Sbjct: 204 KSWRDITVPTLIIGAEYDTIAS 225
>1mpx_A Alpha-amino acid ester hydrolase; alpha/beta hydrolase, jellyroll,
selenomethionine; 1.90A {Xanthomonas citri} SCOP:
b.18.1.13 c.69.1.21
Length = 615
Score = 35.9 bits (82), Expect = 0.075
Identities = 14/70 (20%), Positives = 22/70 (31%), Gaps = 13/70 (18%)
Query: 65 GYISIRMNFRGVGASSGTYD-----------SGNGETDDMEILLRYIQKKYPYLP--IIL 111
GYI + + RG S G Y S D + ++ K + +
Sbjct: 89 GYIRVFQDVRGKYGSEGDYVMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESNGKVGM 148
Query: 112 AGFSFGTFVQ 121
G S+ F
Sbjct: 149 IGSSYEGFTV 158
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A
{Archaeoglobus fulgidus}
Length = 236
Score = 35.1 bits (80), Expect = 0.076
Identities = 30/187 (16%), Positives = 58/187 (31%), Gaps = 19/187 (10%)
Query: 811 KIAVIIGYGDVGKGSAQAMRALSAQVWIIEIDPICALQAAMEGFLVVTMEYAKKYGDIFV 870
+ +IGYG +GK A+ + EI I ++ E + E+ ++ D+ V
Sbjct: 2 LVG-LIGYGAIGKFLAEWLERNG-----FEIAAILDVRGEHEKMVRGIDEFLQREMDVAV 55
Query: 871 TCTGNYHVITH-----DHMRDMKDQAIVCNIGHFDNEIEVEKLKKYKWENIKPQVDHIIF 925
V + D+ IV + G F + + ++++ + +
Sbjct: 56 EAASQQAVKDYAEKILKAGIDL----IVLSTGAFADRDFLSRVREVCRKTGRRVYIASGA 111
Query: 926 PDGKKIILLAEGRLVNLGCGTGHPSYVMS---SSFANQTLAQIELFNNTSNYPIGIYTLP 982
G I A + + T F + F N ++
Sbjct: 112 IGGLDAIFSASELIEEIVLTTRKNWRQFGRKGVIFEGSASEAAQKFPKNLNVAAT-LSIA 170
Query: 983 KILDEKV 989
D KV
Sbjct: 171 SGKDVKV 177
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.090
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 827 QAMRALSAQVWIIEID--PICALQAAME 852
QA++ L A + + D P A++A ME
Sbjct: 20 QALKKLQASLKLYADDSAPALAIKATME 47
>1xkl_A SABP2, salicylic acid-binding protein 2; alpha-beta protein,
structural genomics, protein structure initiative, PSI;
HET: STH; 2.00A {Nicotiana tabacum} SCOP: c.69.1.20 PDB:
1y7i_A* 1y7h_A*
Length = 273
Score = 34.9 bits (80), Expect = 0.095
Identities = 16/103 (15%), Positives = 30/103 (29%), Gaps = 14/103 (13%)
Query: 35 VVLIAHPHPLFGGTMD----NKVVQTLVRVMLSLGYISIRMNFRGVGASSGTYDSGNGET 90
VL+ H G K+ L G+ ++ G +
Sbjct: 7 FVLV---H---GACHGGWSWYKLKPLLEA----AGHKVTALDLAASGTDLRKIEELRTLY 56
Query: 91 DDMEILLRYIQKKYPYLPIILAGFSFGTFVQAKLQKRLDKEIS 133
D L+ ++ +IL G S G ++ ++I
Sbjct: 57 DYTLPLMELMESLSADEKVILVGHSLGGMNLGLAMEKYPQKIY 99
>3i2k_A Cocaine esterase; alpha/beta hydrolase, hydrolase; HET: DBC GOL;
1.51A {Rhodococcus SP} PDB: 3i2j_A* 3puh_A 3i2h_A*
3i2i_A* 3i2g_A* 3ida_A* 3i2f_A* 3pui_A 1ju3_A 1ju4_A
1l7q_A 1l7r_A
Length = 587
Score = 35.3 bits (81), Expect = 0.11
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 9/62 (14%)
Query: 65 GYISIRMNFRGVGASSGTYDSGNGETDDMEILLRYIQKKYPYLP-----IILAGFSFGTF 119
GY + + RG+ AS G + + D E L +I + + + G S+
Sbjct: 66 GYAVVIQDTRGLFASEGEFVPHVDDEADAEDTLSWILE----QAWCDGNVGMFGVSYLGV 121
Query: 120 VQ 121
Q
Sbjct: 122 TQ 123
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI,
M structural genomics; 1.70A {Archaeoglobus fulgidus}
Length = 141
Score = 33.4 bits (77), Expect = 0.12
Identities = 13/124 (10%), Positives = 37/124 (29%), Gaps = 21/124 (16%)
Query: 814 VIIGYGDVGKGSAQAMRALSAQVWIIEIDPICALQAAMEGFLVVTM-----EYAKKYG-- 866
++IG G G + + A +V ++ EGF V + +
Sbjct: 10 IVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLE 69
Query: 867 --DIFVTCTGNYH--VITHDHMRDMKDQAIVCNIGHFDNEIEVEKLKKYKWENIKPQVDH 922
+ + + +R + D + + + + E+ ++ +
Sbjct: 70 GVSAVLITGSDDEFNLKILKALRSVSDVYAIVRV---SSPKKKEEFEEAG-------ANL 119
Query: 923 IIFP 926
++
Sbjct: 120 VVLV 123
>3vdx_A Designed 16NM tetrahedral protein CAGE containing bromoperoxidase
BPO-A2 and matrix...; protein design, bionanotechnology;
3.00A {Streptomyces aureofaciens} PDB: 4d9j_A
Length = 456
Score = 34.8 bits (80), Expect = 0.13
Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 13/78 (16%)
Query: 152 VPKNTIIIHGELDEIIPLKDVFLWANPLDIP---VVVIPESVSEGH--PDKIADQISDAI 206
VP +I+HG D +P+++ + +P V + + H A++++ A+
Sbjct: 219 VP--ALILHGTGDRTLPIENTARVFHKA-LPSAEYVEVEGA---PHGLLWTHAEEVNTAL 272
Query: 207 LDEIFLKDLKARVAAETL 224
L FL + L
Sbjct: 273 LA--FLAKALEAQKQKLL 288
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium
channel, BK channel, rossmann fold, membrane protein;
2.40A {Escherichia coli} SCOP: c.2.1.9
Length = 153
Score = 33.5 bits (77), Expect = 0.13
Identities = 8/58 (13%), Positives = 17/58 (29%), Gaps = 11/58 (18%)
Query: 814 VIIGYGDVGKGSAQAMRALSAQVWIIEIDP----ICALQAAMEGFLVVTMEYAKKYGD 867
++ G+ + + + V +I P Q + V+ GD
Sbjct: 7 IVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVI-------PGD 57
>3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase
fold, hydrolase; 1.20A {Bacillus SP}
Length = 270
Score = 34.4 bits (79), Expect = 0.13
Identities = 31/246 (12%), Positives = 62/246 (25%), Gaps = 77/246 (31%)
Query: 33 KGVVLIAHPHPLFGGTMDNKVVQTLVRVMLSLGYISIRMNFRGVGASSGTYDSGNGE--T 90
GV+L+ H G ++ L GY +G G +
Sbjct: 41 VGVLLV---HGFTGTPHS---MRPLAEAYAKAGYTVCLPRLKGHGTHYEDMERTTFHDWV 94
Query: 91 DDMEILLRYIQKKYPYLPIILAGFSFGTFVQAKLQKRLDKEISIKILILISVAVK----- 145
+E +++++ I + G S G + L + I ++ I+ AV
Sbjct: 95 ASVEEGYGWLKQRCQ--TIFVTGLSMGGTLTLYLAEHHPD---ICGIVPINAAVDIPAIA 149
Query: 146 ------KWLIPEVPKN------------------------------------------TI 157
L + +
Sbjct: 150 AGMTGGGELPRYLDSIGSDLKNPDVKELAYEKTPTASLLQLARLMAQTKAKLDRIVCPAL 209
Query: 158 IIHGELDEIIPLKDVFLWANPL---DIPVVVIPESVSEGH---PDKIADQISDAILDEIF 211
I + D ++P + + + + +V + S H D I + L+ F
Sbjct: 210 IFVSDEDHVVPPGNADIIFQGISSTEKEIVRLRNS---YHVATLDYDQPMIIERSLE--F 264
Query: 212 LKDLKA 217
Sbjct: 265 FAKHAG 270
>3ia2_A Arylesterase; alpha-beta hydrolase fold, transition state analog,
hydrolas oxidoreductase, peroxidase; 1.65A {Pseudomonas
fluorescens} PDB: 1va4_A 3hi4_A 3hea_A
Length = 271
Score = 34.6 bits (80), Expect = 0.14
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 21/71 (29%)
Query: 152 VPKNTIIIHGELDEIIPLKDVFLWANPLDIP---VVVIPESVSEGH------PDKIADQI 202
VP T++IHG+ D+I+P + A L I + V ++ H ++ + +
Sbjct: 212 VP--TLVIHGDGDQIVPFETTGKVAAEL-IKGAELKVYKDA---PHGFAVTHAQQLNEDL 265
Query: 203 SDAILDEIFLK 213
FLK
Sbjct: 266 LA------FLK 270
>2h1i_A Carboxylesterase; structural genomics, PSI-2, protein struct
initiative, midwest center for structural genomics,
MCSG, H; HET: MSE; 2.80A {Bacillus cereus} SCOP:
c.69.1.14
Length = 226
Score = 34.0 bits (78), Expect = 0.15
Identities = 19/117 (16%), Positives = 37/117 (31%), Gaps = 14/117 (11%)
Query: 66 YISIRMNFRGVGASSGTYDSGNGETDDMEIL---------LRYIQKKY--PYLPIILAGF 114
+S+R N G G D+ +++ L K+Y I+ G+
Sbjct: 67 VLSVRGNVLENGMPRFFRRLAEGIFDEEDLIFRTKELNEFLDEAAKEYKFDRNNIVAIGY 126
Query: 115 SFGTFVQAKLQKRLDKEISIKILILISVAVKKWLIPEVPKNT--IIIHGELDEIIPL 169
S G + A L + + ++ + ++ + I G D I
Sbjct: 127 SNGANIAASLLFHYENALK-GAVLHHPMVPRRGMQLANLAGKSVFIAAGTNDPICSS 182
>1brt_A Bromoperoxidase A2; haloperoxidase, oxidoreductase, alpha/beta
hydrolase fold, mutant M99T; 1.50A {Streptomyces
aureofaciens} SCOP: c.69.1.12 PDB: 1bro_A 1a8u_A 1a7u_A
Length = 277
Score = 34.2 bits (79), Expect = 0.16
Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 13/67 (19%)
Query: 152 VPKNTIIIHGELDEIIPLKDVFLWANPLDIP---VVVIPESVSEGH--PDKIADQISDAI 206
VP +I+HG D +P+++ + +P V + + H A++++ A+
Sbjct: 218 VP--ALILHGTGDRTLPIENTARVFHKA-LPSAEYVEVEGA---PHGLLWTHAEEVNTAL 271
Query: 207 LDEIFLK 213
L FL
Sbjct: 272 LA--FLA 276
>2y6u_A Peroxisomal membrane protein LPX1; hydrolase, putative esterase,
putative lipase; HET: CME CSO; 1.90A {Saccharomyces
cerevisiae} PDB: 2y6v_A*
Length = 398
Score = 34.7 bits (79), Expect = 0.16
Identities = 31/219 (14%), Positives = 61/219 (27%), Gaps = 40/219 (18%)
Query: 12 GSVGILHCAINFPSSIKLLKLKGVVLIAHPHPLFGGTMDNKVVQTLVRVMLSLGYISIRM 71
G L C + P+ LL L V+I G + + + +
Sbjct: 147 GGFQALACDVLQPNLFHLLILIEPVVITRKAIGAGRPGLPPDSPQIPENLYNSLRLKTCD 206
Query: 72 NFRGVGASSGTYDSGNGETDDMEILLRYIQKKYPYL---PIILAGFSFGTFVQAKLQKRL 128
+F + ++Y++ + IL +A
Sbjct: 207 HF-----------------ANESEYVKYMRNGSFFTNAHSQILQNIIDFERTKASGDDED 249
Query: 129 DKEISIKILILISVAVKKWLIPEVPKN----------TIIIHGELDEIIPLKDVFLWANP 178
+ K+ ++ + P TI I G P ++
Sbjct: 250 GGPVRTKMEQAQNLLCYMNMQTFAPFLISNVKFVRKRTIHIVGARSNWCPPQNQLFLQKT 309
Query: 179 L-DIPVVVIPESVSEGH------PDKIADQISDAILDEI 210
L + + VIP H PD + ++I+ I + +
Sbjct: 310 LQNYHLDVIPGG---SHLVNVEAPDLVIERINHHIHEFV 345
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold,
structural genomics; HET: NAP F42; 1.65A {Archaeoglobus
fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Length = 212
Score = 33.7 bits (76), Expect = 0.18
Identities = 20/149 (13%), Positives = 44/149 (29%), Gaps = 16/149 (10%)
Query: 811 KIAVIIGYGDVGKGSAQAMRALSAQVWIIEIDPICALQAAMEGFLVVTMEYAKKYGDIFV 870
++A++ G G++GKG A + L ++ + A A E +
Sbjct: 2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAE----------------YR 45
Query: 871 TCTGNYHVITHDHMRDMKDQAIVCNIGHFDNEIEVEKLKKYKWENIKPQVDHIIFPDGKK 930
G+ + + + I +++ I+ + K + G K
Sbjct: 46 RIAGDASITGMKNEDAAEACDIAVLTIPWEHAIDTARDLKNILREKIVVSPLVPVSRGAK 105
Query: 931 IILLAEGRLVNLGCGTGHPSYVMSSSFAN 959
+ R S + S+
Sbjct: 106 GFTYSSERSAAEIVAEVLESEKVVSALHT 134
>1a8q_A Bromoperoxidase A1; haloperoxidase, oxidoreductase; 1.75A
{Streptomyces aureofaciens} SCOP: c.69.1.12
Length = 274
Score = 34.2 bits (79), Expect = 0.19
Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 17/70 (24%)
Query: 152 VPKNTIIIHGELDEIIPLKDVFLWANPLDIP---VVVIPES-----VSEGHPDKIADQIS 203
+P T+++HG+ D+++P+ + + IP + V S + G +K
Sbjct: 213 IP--TLVVHGDDDQVVPIDATGRKSAQI-IPNAELKVYEGSSHGIAMVPGDKEKFN---- 265
Query: 204 DAILDEIFLK 213
+L+ FL
Sbjct: 266 RDLLE--FLN 273
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein;
structural genomics; 1.80A {Aeromonas salmonicida subsp}
Length = 324
Score = 34.2 bits (79), Expect = 0.19
Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 23/103 (22%)
Query: 808 IAGKIAVIIGYGDVGKGSAQAMRALSAQVWII-----EIDPI--CALQAAMEGFLVVTME 860
+ G+ +I+G G +G+ A + +V + E A+ L
Sbjct: 138 LKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGFDQVYQLPALNKMLAQA-- 195
Query: 861 YAKKYGDIFVTC------TGNYHVITHDHMRDMKDQAIVCNIG 897
D+ V+ T +H+ T K AI+ N+G
Sbjct: 196 ------DVIVSVLPATRET--HHLFTASRFEHCKPGAILFNVG 230
>3iii_A COCE/NOND family hydrolase; structural genomics, center for
structural genomi infectious diseases, csgid; HET: MSE
PLM; 1.95A {Staphylococcus aureus subsp} PDB: 3ib3_A*
Length = 560
Score = 34.6 bits (79), Expect = 0.19
Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 10/63 (15%)
Query: 65 GYISIRMNFRGVGASSGTYDS-GNGETDDMEILLRYIQKKYPYLP-----IILAGFSFGT 118
Y+ +++ RG S G E +D ++ + I G S+
Sbjct: 117 DYVVVKVALRGSDKSKGVLSPWSKREAEDYYEVIEWAAN----QSWSNGNIGTNGVSYLA 172
Query: 119 FVQ 121
Q
Sbjct: 173 VTQ 175
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 34.5 bits (79), Expect = 0.22
Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 13/47 (27%)
Query: 794 ESLIDG---IKR-ATDVMIAGKIAVIIGYGDVGK-GSA--QAMRALS 833
ES+ G I + I G GY D + GS M+A S
Sbjct: 1111 ESVDIGVETILSGKARICIVG------GYDDFQEEGSFEFGNMKATS 1151
>1m33_A BIOH protein; alpha-betta-alpha sandwich, structural genomics, PSI,
protei structure initiative; HET: MSE 3OH; 1.70A
{Escherichia coli} SCOP: c.69.1.26
Length = 258
Score = 33.8 bits (78), Expect = 0.25
Identities = 11/76 (14%), Positives = 25/76 (32%), Gaps = 24/76 (31%)
Query: 152 VPKNTIIIHGELDEIIPLKDV-FLWANPLDIP---VVVIPESVSEGH------PDKIADQ 201
+P + ++G LD ++P K V L P + ++ H P +
Sbjct: 197 MP--FLRLYGYLDGLVPRKVVPMLDKL---WPHSESYIFAKA---AHAPFISHPAEFCHL 248
Query: 202 ISDAILDEIFLKDLKA 217
+ + + +
Sbjct: 249 LVA------LKQRVGS 258
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural
genomics, PSI-2, Pro structure initiative; HET: MSE AMP;
1.79A {Escherichia coli k-12}
Length = 140
Score = 32.5 bits (75), Expect = 0.25
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 7/55 (12%)
Query: 813 AVIIGYGDVGKGSAQAMRALSAQVWIIEIDPICALQAAMEGFLVVTMEYAKKYGD 867
A+++GYG VG + + A + +IE + G V G+
Sbjct: 10 ALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAV-------LGN 57
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Length = 313
Score = 33.7 bits (78), Expect = 0.27
Identities = 22/103 (21%), Positives = 41/103 (39%), Gaps = 13/103 (12%)
Query: 801 KRATDVMIAGKIAVIIGYGDVGKGSAQAMRALSAQVWIIEIDPICALQAAME-GFLVVTM 859
K+ + +AGK I+G+G +G A+ +V + D + + A + V++
Sbjct: 133 KKIEGLELAGKTIGIVGFGRIGTKVGIIANAMGMKV--LAYDILDIREKAEKINAKAVSL 190
Query: 860 EYAKKYGDIFVTC-------TGNYHVITHDHMRDMKDQAIVCN 895
E K D ++ +I + MKD I+ N
Sbjct: 191 EELLKNSD-VISLHVTVSKDA--KPIIDYPQFELMKDNVIIVN 230
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold,
helix-turn-helix, Ca2+ binding, flexible interface;
1.70A {Methanothermobacterthermautotrophicus} PDB:
2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Length = 234
Score = 33.1 bits (76), Expect = 0.33
Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 814 VIIGYGDVGKGSAQAMRALSAQVWIIEIDPICALQAAMEGFLVV 857
VI G+ + + +R ++V+++ D + G V
Sbjct: 13 VICGWSESTLECLRELRG--SEVFVLAEDENVRKKVLRSGANFV 54
>1ycd_A Hypothetical 27.3 kDa protein in AAP1-SMF2 intergenic region;
esterase, lipase, serine hydrolase, structural genomics;
HET: LI5; 1.70A {Saccharomyces cerevisiae}
Length = 243
Score = 33.0 bits (74), Expect = 0.39
Identities = 26/161 (16%), Positives = 51/161 (31%), Gaps = 39/161 (24%)
Query: 83 YDSGNGETDDMEILLRYIQKKYPYLPIILAGFSFG----TFVQAKLQKRLDKEISIKILI 138
++ ++ ++ +I+ PY + G S G + + K+ + + K+ +
Sbjct: 80 ISHELDISEGLKSVVDHIKANGPY--DGIVGLSQGAALSSIITNKISELVPDHPQFKVSV 137
Query: 139 LISVAVKKWLIPEVPKN--------------------TIIIHGELDEIIPLKDVFLWANP 178
+IS PE P I I+G D+ +P +
Sbjct: 138 VISGYSFTEPDPEHPGELRITEKFRDSFAVKPDMKTKMIFIYGASDQAVPSVRSKYLYDI 197
Query: 179 LDIPVVVIPESV-----SEGH--P------DKIADQISDAI 206
E V GH P I +QI+ ++
Sbjct: 198 YLKAQNGNKEKVLAYEHPGGHMVPNKKDIIRPIVEQITSSL 238
>1a88_A Chloroperoxidase L; haloperoxidase, oxidoreductase; 1.90A
{Streptomyces lividans} SCOP: c.69.1.12
Length = 275
Score = 33.0 bits (76), Expect = 0.39
Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 13/67 (19%)
Query: 152 VPKNTIIIHGELDEIIPLKDVFLWANPLDIP---VVVIPESVSEGH--PDKIADQISDAI 206
VP ++ HG D+++P D + L + + H + ++ +
Sbjct: 216 VP--VLVAHGTDDQVVPYADAAPKSAEL-LANATLKSYEGL---PHGMLSTHPEVLNPDL 269
Query: 207 LDEIFLK 213
L F+K
Sbjct: 270 LA--FVK 274
>3e0x_A Lipase-esterase related protein; APC60309, clostridium
acetobutylicum ATCC 824, structural genomics, PSI-2;
HET: MSE; 1.45A {Clostridium acetobutylicum}
Length = 245
Score = 32.7 bits (75), Expect = 0.43
Identities = 29/164 (17%), Positives = 55/164 (33%), Gaps = 22/164 (13%)
Query: 69 IRMNFRGVGASSGT-YDSGNGETDDMEILLRYIQKKYPYLPIILAGFSFGTFV----QAK 123
I ++ +G G S G + G D++ + + I L G+S G + K
Sbjct: 45 ILLDLKGHGESKGQCPSTVYGYIDNVANFITNSEVTKHQKNITLIGYSMGGAIVLGVALK 104
Query: 124 LQKRLDKEISIKILILISVAVKKWLIPEVPKNTI--IIHGELDEIIPLKDVFLWANPLDI 181
+ K ++ +S + ++ K+ + I H +LD L+ + NPL
Sbjct: 105 KLPNVRK------VVSLSGGAR---FDKLDKDFMEKIYHNQLDNNYLLECIGGIDNPLSE 155
Query: 182 PVVVIPESVSEGHPDKIADQISDAILDEIFLKDLKARVAAETLC 225
E + I A + +LK +
Sbjct: 156 KYFETLEKDPD-----IMINDLIACKLIDLVDNLK-NIDIPVKA 193
Score = 30.4 bits (69), Expect = 2.3
Identities = 4/65 (6%), Positives = 20/65 (30%), Gaps = 14/65 (21%)
Query: 149 IPEVPKNTIIIHGELDEIIPLKDVFLWANPLDIP---VVVIPESVSEGH------PDKIA 199
+ + I + + + ++ + ++ + + H +A
Sbjct: 184 LKNIDIPVKAIVAKDELLTLVEYSEIIKK--EVENSELKIFETG---KHFLLVVNAKGVA 238
Query: 200 DQISD 204
++I +
Sbjct: 239 EEIKN 243
>3sty_A Methylketone synthase 1; alpha/beta hydrolase, decarboxylase,
hydrolase; HET: DKA; 1.70A {Lycopersicon hirsutum F}
PDB: 3stu_A* 3stt_A* 3stv_A* 3stw_A* 3stx_A*
Length = 267
Score = 33.0 bits (75), Expect = 0.43
Identities = 15/82 (18%), Positives = 34/82 (41%)
Query: 57 LVRVMLSLGYISIRMNFRGVGASSGTYDSGNGETDDMEILLRYIQKKYPYLPIILAGFSF 116
+V +M S G+ ++ G + +D + L+ ++ IIL G +
Sbjct: 31 IVALMRSSGHNVTALDLGASGINPKQALQIPNFSDYLSPLMEFMASLPANEKIILVGHAL 90
Query: 117 GTFVQAKLQKRLDKEISIKILI 138
G +K + ++IS+ + +
Sbjct: 91 GGLAISKAMETFPEKISVAVFL 112
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose
reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2
c.2.1.1
Length = 352
Score = 33.0 bits (76), Expect = 0.45
Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 799 GIKRATDVMIAGKIAVIIGYGDVGKGSAQAMRALSAQVWIIEIDPICALQAAME 852
+RA G ++IG G +G S A +A A V P L+ A
Sbjct: 160 ACRRAGVQ--LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRR-LEVAKN 210
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation
phosphoglycerate dehydrogenase PGDH, oxidoreductase;
HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4
c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A*
2pa3_A* 2p9g_A*
Length = 404
Score = 33.0 bits (76), Expect = 0.46
Identities = 18/93 (19%), Positives = 29/93 (31%), Gaps = 9/93 (9%)
Query: 808 IAGKIAVIIGYGDVGKGSAQAMRALSAQVWIIEIDPICALQAAMEGFLVVTMEYAKKYGD 867
GK IIGYG +G +L V D L V + D
Sbjct: 143 ARGKKLGIIGYGHIGTQLGILAESLGMYV--YFYDIENKLPLGN-ATQVQHLSDLLNMSD 199
Query: 868 IFVTC-----TGNYHVITHDHMRDMKDQAIVCN 895
V+ +++ + MK +++ N
Sbjct: 200 -VVSLHVPENPSTKNMMGAKEISLMKPGSLLIN 231
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate
dehydrogenase, D-lactate dehydrogenas oxidoreductase;
HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4
c.23.12.1
Length = 333
Score = 33.0 bits (76), Expect = 0.48
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 9/93 (9%)
Query: 808 IAGKIAVIIGYGDVGKGSAQAMRALSAQVWIIEIDPICALQAAMEGFLVVTMEYAKKYGD 867
+ + ++G G +G+ + + + A+V I DP + F V++E K D
Sbjct: 143 LGQQTVGVMGTGHIGQVAIKLFKGFGAKV--IAYDPYPM-KGDHPDFDYVSLEDLFKQSD 199
Query: 868 IFVT--C---TGNYHVITHDHMRDMKDQAIVCN 895
+ + N H+I MK AIV N
Sbjct: 200 V-IDLHVPGIEQNTHIINEAAFNLMKPGAIVIN 231
>1hkh_A Gamma lactamase; hydrolase, alpha/beta hydrolase, CO-factor free
haloperoxidase,; 1.73A {Microbacterium} SCOP: c.69.1.12
PDB: 1hl7_A*
Length = 279
Score = 32.8 bits (75), Expect = 0.51
Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 19/67 (28%)
Query: 156 TIIIHGELDEIIPLKDVFLWANPLDIP---VVVIPESVSEGH------PDKIADQISDAI 206
T+I+HG D I+P+ + +P V + + H D++ A+
Sbjct: 222 TLILHGTKDNILPIDATARRFHQA-VPEADYVEVEGA---PHGLLWTHADEVN----AAL 273
Query: 207 LDEIFLK 213
FL
Sbjct: 274 KT--FLA 278
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural
variant of the BAB rossmann fold, oxidoreductase; 1.98A
{Acidaminococcus fermentans}
Length = 331
Score = 33.0 bits (76), Expect = 0.51
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 9/93 (9%)
Query: 808 IAGKIAVIIGYGDVGKGSAQAMRALSAQVWIIEIDPICALQAAMEGFLVVTMEYAKKYGD 867
+ ++G G +G+ +AQ + A V I D + + V+++ + D
Sbjct: 144 VRNCTVGVVGLGRIGRVAAQIFHGMGATV--IGEDVFEI-KGIEDYCTQVSLDEVLEKSD 200
Query: 868 IFVT--C---TGNYHVITHDHMRDMKDQAIVCN 895
I +T N V+T D ++ MKD AI+ N
Sbjct: 201 I-ITIHAPYIKENGAVVTRDFLKKMKDGAILVN 232
>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG,
PSI-2, GFO/IDH/MO family, protein structure initiative;
HET: MSE EPE; 1.80A {Porphyromonas gingivalis}
Length = 304
Score = 33.0 bits (75), Expect = 0.53
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 811 KIAV-IIGYGDVGKGSAQAMRALSAQ--VWIIEIDPICALQAAMEGFLVVTMEYAKKYGD 867
KI I+GYG++G+ + QA+R I+ +P + ++ F VV+ + D
Sbjct: 9 KIRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNP-AEVPFELQPFRVVSDIEQLESVD 67
Query: 868 IFVTCTGN 875
+ + C+ +
Sbjct: 68 VALVCSPS 75
>2b9v_A Alpha-amino acid ester hydrolase; catalytic triad,
alpha/beta-hydrolase; 2.00A {Acetobacter pasteurianus}
SCOP: b.18.1.13 c.69.1.21 PDB: 2b4k_A 1nx9_A* 1ryy_A
Length = 652
Score = 33.2 bits (75), Expect = 0.57
Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 13/70 (18%)
Query: 65 GYISIRMNFRGVGASSGTYDS-----------GNGETDDMEILLRYIQKKYPYLP--IIL 111
GYI + + RG S G Y ET D + ++ P + +
Sbjct: 102 GYIRVFQDIRGKYGSQGDYVMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESNGRVGM 161
Query: 112 AGFSFGTFVQ 121
G S+ F
Sbjct: 162 TGSSYEGFTV 171
>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum
aerophilum} SCOP: c.2.1.4 c.23.12.1
Length = 303
Score = 32.6 bits (75), Expect = 0.59
Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 11/96 (11%)
Query: 807 MIAGKIAVIIGYGDVGKGSAQAMRALSAQVWIIEIDPICALQAAMEGFLVVTMEYAKKYG 866
+I G+ ++G G++G + + AL AQV P ++E A +
Sbjct: 121 LIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTP-----KEGPWRFTNSLEEALREA 175
Query: 867 DIFVTCT-----GNYHVITHDHMRDMKDQAIVCNIG 897
C ++ + H+ M + A+ N+G
Sbjct: 176 R-AAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVG 210
>3guu_A Lipase A; protein structure, hydrolase; HET: 1PE; 2.10A {Candida
antarctica} PDB: 2veo_A*
Length = 462
Score = 33.0 bits (74), Expect = 0.63
Identities = 33/260 (12%), Positives = 72/260 (27%), Gaps = 21/260 (8%)
Query: 12 GSVGILHCAINFPSSIKLLKLKGVVLIAHPHPLFGGTMD-NKVVQTLVRVMLSLGYISIR 70
G+ + S L + G P N + G
Sbjct: 207 GAHATVWATSLAESYAPELNIVGASHGGTPVSAKDTFTFLNGGPFAGFALAGVSGLSLAH 266
Query: 71 MNFRGVGASSGTYDSGN--GETDDMEILLRYIQKKYPYLPIILAGFSFGTFVQAKLQKRL 128
+ + + L + YP+L + +A + L
Sbjct: 267 PDMESFIEARLNAKGQRTLKQIRGRGFCLPQVVLTYPFLNVFSLVNDTNLLNEAPIASIL 326
Query: 129 DKEISIKILILISVAVKKWLIPEVPKNTIIIHGELDEIIPLKDVFLWANPL-----DIPV 183
+E ++ + A +P+ P I H DEI+P + + +I
Sbjct: 327 KQE-----TVVQAEASYTVSVPKFP--RFIWHAIPDEIVPYQPAATYVKEQCAKGANINF 379
Query: 184 VVIPESVSEGHPDKIADQISDAILDEIFLKDLKARVAAETLCNNNLIVLSGEITTDANID 243
P + H + ++ F+K + +C + ++G T A+
Sbjct: 380 SPYPIA---EHLTAEIFGLVPSLW---FIKQAFDGTTPKVICGTPIPAIAGITTPSADQV 433
Query: 244 YVNIVRKTIKDIGYNNIDYG 263
+ + ++ + +G
Sbjct: 434 LGSDLANQLRSLDGKQSAFG 453
>2ltl_A NIFU-like protein, mitochondrial; structural genomics, northeast
structural consortium, NESG, PSI-biology; NMR
{Saccharomyces cerevisiae}
Length = 119
Score = 30.7 bits (69), Expect = 0.72
Identities = 9/43 (20%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 893 VCNIGHFDNEIEVEKLKKYKWENIKPQVDHII---FPDGKKII 932
V ++ D+ + + K + W +IKP++ ++ G+ +I
Sbjct: 74 VESLMIGDDFLTINKDRMVHWNSIKPEIIDLLTKQLAYGEDVI 116
>3hss_A Putative bromoperoxidase; alpha beta hydrolase, oxidoreductase,
hydrolase; 1.90A {Mycobacterium tuberculosis} PDB:
3e3a_A 3hys_A 3hzo_A
Length = 293
Score = 32.3 bits (74), Expect = 0.74
Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 14/71 (19%)
Query: 152 VPKNTIIIHGELDEIIPLKDVFLWANPLDIP---VVVIPESVSEGH--PDKIADQISDAI 206
P ++I D + P A+ +P + IP++ GH + + ++ A+
Sbjct: 232 AP--VLVIGFADDVVTPPYLGREVAD--ALPNGRYLQIPDA---GHLGFFERPEAVNTAM 284
Query: 207 LDEIFLKDLKA 217
L F +KA
Sbjct: 285 LK--FFASVKA 293
>1a8s_A Chloroperoxidase F; haloperoxidase, oxidoreductase, propionate
complex; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.12
Length = 273
Score = 32.3 bits (74), Expect = 0.78
Identities = 12/71 (16%), Positives = 31/71 (43%), Gaps = 21/71 (29%)
Query: 152 VPKNTIIIHGELDEIIPLKDVFLWANPLDIP---VVVIPESVSEGH------PDKIADQI 202
VP T+++HG+ D+++P++ + + L + + + + H D++ +
Sbjct: 214 VP--TLVVHGDADQVVPIEASGIASAAL-VKGSTLKIYSGA---PHGLTDTHKDQLNADL 267
Query: 203 SDAILDEIFLK 213
F+K
Sbjct: 268 LA------FIK 272
>3oos_A Alpha/beta hydrolase family protein; APC67239.0, protein structure
initiative, PSI-2, structural midwest center for
structural genomics, MCSG; HET: MSE PG4; 1.65A {Bacillus
anthracis}
Length = 278
Score = 31.9 bits (73), Expect = 0.80
Identities = 14/58 (24%), Positives = 19/58 (32%), Gaps = 14/58 (24%)
Query: 156 TIIIHGELDEIIPLKDVFLWANPLDIP---VVVIPESVSEGH------PDKIADQISD 204
+ I G+ D P AN IP + ES H DK ++D
Sbjct: 224 SFIYCGKHDVQCPYIFSCEIAN--LIPNATLTKFEES---NHNPFVEEIDKFNQFVND 276
>1wwk_A Phosphoglycerate dehydrogenase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus
horikoshii}
Length = 307
Score = 32.1 bits (74), Expect = 0.84
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 13/96 (13%)
Query: 808 IAGKIAVIIGYGDVGKGSAQAMRALSAQVWIIEIDPICALQAAME-GFLVVTMEYAKKYG 866
+ GK IIG+G +G A+ AL + + DP + A E V +E K
Sbjct: 140 LEGKTIGIIGFGRIGYQVAKIANALGMNI--LLYDPYPNEERAKEVNGKFVDLETLLKES 197
Query: 867 DIFVTC-------TGNYHVITHDHMRDMKDQAIVCN 895
D VT T YH+I + ++ MK AI+ N
Sbjct: 198 D-VVTIHVPLVEST--YHLINEERLKLMKKTAILIN 230
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J,
structural genomics, protein structure initiative; 2.20A
{Thermoplasma acidophilum}
Length = 290
Score = 32.2 bits (74), Expect = 0.85
Identities = 16/102 (15%), Positives = 35/102 (34%), Gaps = 14/102 (13%)
Query: 801 KRATDVMIAGKIAVIIGYGDVGKGSAQAMRALSAQVWIIEIDPICALQAAMEGFLVVTME 860
+++ ++ GK I+GYG +G+ A +A +V I + +
Sbjct: 113 RQSPTTLLYGKALGILGYGGIGRRVAHLAKAFGMRV--IAYTRS--SVDQNVDVISESPA 168
Query: 861 YAKKYGDIFVTC-------TGNYHVITHDHMRDMKDQAIVCN 895
+ D FV T ++ + + + + N
Sbjct: 169 DLFRQSD-FVLIAIPLTDKT--RGMVNSRLLANARKNLTIVN 207
>3qvm_A OLEI00960; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, alpha-beta hydrolase fold,
hydrolase; 2.00A {Oleispira antarctica}
Length = 282
Score = 31.8 bits (73), Expect = 1.00
Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 14/72 (19%)
Query: 152 VPKNTIIIHGELDEIIPLKDVFLWANPLDIP---VVVIPESVSEGH--PDKIADQISDAI 206
P +I D + + A +IP + +I GH A I+ +
Sbjct: 219 TP--ALIFQSAKDSLASPEVGQYMAE--NIPNSQLELIQAE---GHCLHMTDAGLITPLL 271
Query: 207 LDEIFLKDLKAR 218
+ F+++ + R
Sbjct: 272 IH--FIQNNQTR 281
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate
dehydrogenase (EC...; 1574749, chorismate mutase type
II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae}
SCOP: a.100.1.12 c.2.1.6
Length = 298
Score = 31.9 bits (73), Expect = 1.0
Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Query: 793 RESLID----GIKRATDVMIAGKIAVIIGYGDVGKGS-AQAMRALSAQVWIIEIDPICAL 847
RES + G K + KI ++ GYG +G G A+ +RA + I++ +
Sbjct: 3 RESYANENQFGFKTINSDI--HKIVIVGGYGKLG-GLFARYLRASGYPISILDREDWAVA 59
Query: 848 QAAMEGF-LVV 857
++ + +V+
Sbjct: 60 ESILANADVVI 70
>1iup_A META-cleavage product hydrolase; aromatic compounds, cumene,
isopropylbenzene, META-cleavage compound hydrolase;
1.60A {Pseudomonas fluorescens} SCOP: c.69.1.10 PDB:
1iun_A 1iuo_A 1uk6_A 1uk7_A 1uk8_A 1uk9_A 1uka_A 1ukb_A
2d0d_A
Length = 282
Score = 31.5 bits (72), Expect = 1.1
Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 13/73 (17%)
Query: 156 TIIIHGELDEIIPLKDVFLWANPLDIP---VVVIPESVSEGH--PDKIADQISDAILDEI 210
T+IIHG D+++PL I + V GH + D+ + +++
Sbjct: 216 TLIIHGREDQVVPLSSSLRLGE--LIDRAQLHVFGRC---GHWTQIEQTDRFNRLVVE-- 268
Query: 211 FLKDLK-ARVAAE 222
F + ++
Sbjct: 269 FFNEANTPKLVGR 281
>3au8_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH binding;
HET: NDP; 1.86A {Plasmodium falciparum} PDB: 3au9_A*
3aua_A*
Length = 488
Score = 31.9 bits (73), Expect = 1.1
Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 179 LDIPVVVIPESVSEGHPDKIADQISDAILDEIFLKDLKARVAAETLCN 226
DI ++ V E + + S+ ++ +I A+ A + N
Sbjct: 438 FDISSII--SQVLESFNSQKVSENSEDLMKQILQIHSWAKDKATDIYN 483
>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative
deamination mechanism, oxidoreductase; HET: PHE NAD;
1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB:
1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*
Length = 355
Score = 31.8 bits (73), Expect = 1.1
Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 6/89 (6%)
Query: 808 IAGKIAVIIGYGDVGKGSAQAMRALSAQVWIIEIDPICALQAAMEGFLVVTME--YAKKY 865
+ G ++ G G VG A AQ+ + + D A G V +E +
Sbjct: 173 LDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTPC 232
Query: 866 GDIFVTC-TGNYHVITHDHMRDMKDQAIV 893
D+F C G VIT + R + +
Sbjct: 233 -DVFAPCAMGG--VITTEVARTLDCSVVA 258
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase,
phosphoglycerate dehydrogenase deficiency, S metabolism,
2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo
sapiens}
Length = 335
Score = 31.8 bits (73), Expect = 1.1
Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 13/96 (13%)
Query: 808 IAGKIAVIIGYGDVGKGSAQAMRALSAQVWIIEIDPICALQAAME-GFLVVTMEYAKKYG 866
+ GK I+G G +G+ A M++ + I DPI + + + G + +E
Sbjct: 163 LNGKTLGILGLGRIGREVATRMQSFGMKT--IGYDPIISPEVSASFGVQQLPLEEIWPLC 220
Query: 867 DIFVTC-------TGNYHVITHDHMRDMKDQAIVCN 895
D F+T T ++ + K V N
Sbjct: 221 D-FITVHTPLLPST--TGLLNDNTFAQCKKGVRVVN 253
>1u2e_A 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; alpha/beta
hydrolase fold; 2.10A {Escherichia coli}
Length = 289
Score = 31.2 bits (71), Expect = 1.5
Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 20/74 (27%)
Query: 149 IPEVPKNTIIIHGELDEIIPLKDVFLWANPLDIP---VVVIPESVSEGH------PDKIA 199
+ E+ T+I+ G D +P+ + I + + + GH D
Sbjct: 225 LAEIKAQTLIVWGRNDRFVPMDAGLRLLS--GIAGSELHIFRDC---GHWAQWEHADAFN 279
Query: 200 DQISDAILDEIFLK 213
+ + FL
Sbjct: 280 QLVLN------FLA 287
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine
biosy structural genomics, PSI, protein structure
initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis}
SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A*
3ddn_A*
Length = 529
Score = 31.5 bits (72), Expect = 1.5
Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 7/93 (7%)
Query: 808 IAGKIAVIIGYGDVGKGSAQAMRALSAQVWIIEIDPICALQAAME-GFLVVTMEYAKKYG 866
I GK ++G G +G+ AQ + A A V + DP + A + G +++++
Sbjct: 140 IFGKTVGVVGLGRIGQLVAQRIAAFGAYV--VAYDPYVSPARAAQLGIELLSLDDLLARA 197
Query: 867 DIFVTCTG----NYHVITHDHMRDMKDQAIVCN 895
D +I + + K I+ N
Sbjct: 198 DFISVHLPKTPETAGLIDKEALAKTKPGVIIVN 230
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii
OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus
horikoshii} PDB: 2dfv_A* 3gfb_A*
Length = 348
Score = 31.4 bits (72), Expect = 1.6
Identities = 19/111 (17%), Positives = 39/111 (35%), Gaps = 14/111 (12%)
Query: 808 IAGKIAVIIGYGDVGKGSAQAMRALSA-QVWIIEIDPI-----------CALQAAMEGFL 855
I+GK +I G G +G +A A V + E + E +
Sbjct: 166 ISGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVV 225
Query: 856 VVTMEYAKKYG-DIFVTCTGNYHVITHDHMRDMKDQAIVCNIGHFDNEIEV 905
M+ G D+F+ +G + ++ + V +G + ++ +
Sbjct: 226 KEVMDITDGNGVDVFLEFSGAPKAL-EQGLQAVTPAGRVSLLGLYPGKVTI 275
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase,
oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A
{Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Length = 366
Score = 31.2 bits (71), Expect = 1.8
Identities = 12/99 (12%), Positives = 30/99 (30%), Gaps = 10/99 (10%)
Query: 809 AGKIAVIIGYGDVGKGSAQAMRALSAQVWIIEIDPICALQAAMEGFLVVTM--------E 860
+ +++G G +G R +VW+ ++ + +
Sbjct: 180 NCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYYNSSNGYDK 239
Query: 861 YAKKYG--DIFVTCTGNYHVITHDHMRDMKDQAIVCNIG 897
G D+ + TG I + + + ++ G
Sbjct: 240 LKDSVGKFDVIIDATGADVNILGNVIPLLGRNGVLGLFG 278
>2wue_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolase BPHD; HET: KEK;
1.80A {Mycobacterium tuberculosis} PDB: 2wud_A* 2wuf_A*
2wug_A* 2vf2_A
Length = 291
Score = 31.1 bits (71), Expect = 1.8
Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 14/65 (21%)
Query: 149 IPEVPKNTIIIHGELDEIIPLKDVFLWANPLDIP---VVVIPESVSEGH------PDKIA 199
+ + + ++I G D + PL + IP + V + GH D+
Sbjct: 226 VYRLRQPVLLIWGREDRVNPLDGALVALK--TIPRAQLHVFGQC---GHWVQVEKFDEFN 280
Query: 200 DQISD 204
+
Sbjct: 281 KLTIE 285
>1j1i_A META cleavage compound hydrolase; carbazole degradation, META
cleavage product hydrolase, histidine tagged protein,
alpha/beta-hydrolase; 1.86A {Janthinobacterium} SCOP:
c.69.1.10
Length = 296
Score = 31.2 bits (71), Expect = 1.9
Identities = 16/79 (20%), Positives = 34/79 (43%), Gaps = 12/79 (15%)
Query: 148 LIPEVPKNTIIIHGELDEIIPLKDVFLWANPLDIP---VVVIPESVSEGH--PDKIADQI 202
I +V T+++ G+ D+++P++ + + + I +IP GH + +
Sbjct: 217 FIRKVQVPTLVVQGKDDKVVPVETAYKFLD--LIDDSWGYIIPHC---GHWAMIEHPEDF 271
Query: 203 SDAILDEIFLKDLKARVAA 221
++A L FL A
Sbjct: 272 ANATLS--FLSLRVDITPA 288
>2puj_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; C-C bond
hydrolase, hydrolase; HET: HPZ; 1.57A {Burkholderia
xenovorans} PDB: 2pu7_A* 3v1m_A* 3v1l_A* 2puh_A* 3v1n_A*
3v1k_A* 2og1_A 2pu5_A 2rhw_A* 2rht_A* 2ri6_A
Length = 286
Score = 30.8 bits (70), Expect = 1.9
Identities = 14/74 (18%), Positives = 23/74 (31%), Gaps = 20/74 (27%)
Query: 149 IPEVPKNTIIIHGELDEIIPLKDVFLWANPLDIP---VVVIPESVSEGH------PDKIA 199
+ E+ T I G D +PL +I + V + G D+
Sbjct: 222 LGEIKAKTFITWGRDDRFVPLDHGLKLLW--NIDDARLHVFSKC---GAWAQWEHADEFN 276
Query: 200 DQISDAILDEIFLK 213
+ D FL+
Sbjct: 277 RLVID------FLR 284
>1onw_A Isoaspartyl dipeptidase; amidohydrolase, hydrolase,
metalloprotease; HET: KCX; 1.65A {Escherichia coli}
SCOP: b.92.1.7 c.1.9.13 PDB: 1onx_A* 1po9_A* 1poj_A*
1pok_B* 2aqo_A* 1ybq_A* 2aqv_A*
Length = 390
Score = 30.9 bits (70), Expect = 2.3
Identities = 17/91 (18%), Positives = 28/91 (30%), Gaps = 10/91 (10%)
Query: 807 MIAGKI-AVIIGYGDVGKGSAQAMRALSAQVWIIEIDPICALQAAM----EGFLVVTMEY 861
++ GK + GD K L PI L +E+
Sbjct: 190 LLGGKPGVTVFHMGDSKKALQPIYDLLEN-----CDVPISKLLPTHVNRNVPLFEQALEF 244
Query: 862 AKKYGDIFVTCTGNYHVITHDHMRDMKDQAI 892
A+K G I +T + + V + + I
Sbjct: 245 ARKGGTIDITSSIDEPVAPAEGIARAVQAGI 275
>2ocg_A Valacyclovir hydrolase; alpha beta hydrolase fold; 1.75A {Homo
sapiens} PDB: 2oci_A* 2ock_A 2ocl_A
Length = 254
Score = 30.7 bits (70), Expect = 2.3
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 14/64 (21%)
Query: 156 TIIIHGELDEIIPLKDV-FLWANPLDIP---VVVIPESVSEGH--PDKIADQISDAILDE 209
+I+HGE D ++P F+ + + + ++PE H + AD+ + D
Sbjct: 199 ALIVHGEKDPLVPRFHADFIHKH---VKGSRLHLMPEG---KHNLHLRFADEFNKLAED- 251
Query: 210 IFLK 213
FL+
Sbjct: 252 -FLQ 254
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein,
phosphorylation, transcriptional corepresso
transcription repressor; HET: NAD; 1.95A {Homo sapiens}
SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A*
3ga0_A 2ome_A*
Length = 347
Score = 30.7 bits (70), Expect = 2.3
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 10/95 (10%)
Query: 808 IAGKIAVIIGYGDVGKGSAQAMRALSAQVWIIEIDPIC--ALQAAMEGFLVVTMEYAKKY 865
I G+ IIG G VG+ A +A V + DP ++ A+ V T++ +
Sbjct: 166 IRGETLGIIGLGRVGQAVALRAKAFGFNV--LFYDPYLSDGVERALGLQRVSTLQDLLFH 223
Query: 866 GDIFVTC-----TGNYHVITHDHMRDMKDQAIVCN 895
D VT N+H+I ++ M+ A + N
Sbjct: 224 SD-CVTLHCGLNEHNHHLINDFTVKQMRQGAFLVN 257
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold,
oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB:
2xaa_A*
Length = 345
Score = 30.7 bits (70), Expect = 2.4
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 799 GIKRATDVMIAGKIAVIIGYGDVGKGSAQAMRALSA-QVWIIEIDPICALQAAME 852
I R ++ G AV+IG G +G Q +RA+SA +V +++D L A E
Sbjct: 161 AISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDD-RLALARE 214
>2wfl_A Polyneuridine-aldehyde esterase; alkaloid metabolism, monoterpenoid
indole alkaloids, PNAE, hydrolase, serine esterase; HET:
CME; 2.10A {Rauvolfia serpentina} PDB: 2wfm_A 3gzj_A*
Length = 264
Score = 30.7 bits (69), Expect = 2.5
Identities = 16/82 (19%), Positives = 33/82 (40%)
Query: 57 LVRVMLSLGYISIRMNFRGVGASSGTYDSGNGETDDMEILLRYIQKKYPYLPIILAGFSF 116
L ++ S G+ ++ G + D + D E L+ + P ++L G SF
Sbjct: 29 LKPLLESAGHKVTAVDLSAAGINPRRLDEIHTFRDYSEPLMEVMASIPPDEKVVLLGHSF 88
Query: 117 GTFVQAKLQKRLDKEISIKILI 138
G + ++IS+ + +
Sbjct: 89 GGMSLGLAMETYPEKISVAVFM 110
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP
oxidoreductase coenzyme F420-dependent, structural
genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum
WCFS1}
Length = 209
Score = 30.2 bits (67), Expect = 2.5
Identities = 7/46 (15%), Positives = 13/46 (28%), Gaps = 1/46 (2%)
Query: 811 KIAVIIGYGDVGKGSAQAMRALSAQVWIIEIDPICALQAAMEGFLV 856
+I I G G++G+ +V + V
Sbjct: 21 EIT-IFGKGNMGQAIGHNFEIAGHEVTYYGSKDQATTLGEIVIMAV 65
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus
sphaericus} SCOP: c.2.1.7 c.58.1.1
Length = 364
Score = 30.6 bits (70), Expect = 2.5
Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 808 IAGKIAVIIGYGDVGKGSAQAMRALSAQVWIIEIDPICALQAAMEGFLVVTMEYAKKYG- 866
+ G + G G+V K + + A++ + +++ A+ AA+ + YG
Sbjct: 171 LEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNK-AAVSAAVAEEGADAVAPNAIYGV 229
Query: 867 --DIFVTC-TGNYHVITHDHMRDMKDQAIV 893
DIF C G V+ + +K + I
Sbjct: 230 TCDIFAPCALGA--VLNDFTIPQLKAKVIA 257
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator
(CDF), transporter, zinc, membrane protein, cytosolic
domain; 2.84A {Thermotoga maritima}
Length = 107
Score = 28.9 bits (65), Expect = 2.8
Identities = 6/33 (18%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 179 LDIPVVVIPE-SVSEGHPDKIADQISDAILDEI 210
+++ + V + SV + H ++ +I +L
Sbjct: 42 IEMDIEVDGKMSVKDAH--ELTVKIRKEMLKRR 72
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle,
zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP:
b.35.1.2 c.2.1.1
Length = 359
Score = 30.3 bits (69), Expect = 3.0
Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 799 GIKRATDVMIAGKIAVIIGYGDVGKGSAQAMRAL-SAQVWIIEIDPICALQAAME 852
+K+A + G I+G G +G + Q ++ + A V +++ L+ A
Sbjct: 176 AVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEE-KLKLAER 229
>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase,
structural genomics, NPPSFA; HET: MES; 2.50A {Thermus
thermophilus} PDB: 2ejv_A*
Length = 343
Score = 30.2 bits (69), Expect = 3.1
Identities = 21/119 (17%), Positives = 43/119 (36%), Gaps = 16/119 (13%)
Query: 799 GIKRATDVMIAGKIAVIIGYGDVGKGSAQAMRALSA-QVWIIEIDPICALQAAME-GFLV 856
+ + ++GK +I G G +G +A +RA A + + + +P L A +
Sbjct: 156 TVYAGS--GVSGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPY-RLAFARPYADRL 212
Query: 857 V---------TMEYAKKYG-DIFVTCTGNYHVITHDHMRDMKDQAIVCNIGHFDNEIEV 905
V + G ++ + +GN I H + + +G + I
Sbjct: 213 VNPLEEDLLEVVRRVTGSGVEVLLEFSGNEAAI-HQGLMALIPGGEARILGIPSDPIRF 270
>1pqx_A Conserved hypothetical protein; ZR18,structure,
autostructure,spins,autoassign, northeast structural
genomics consortium; NMR {Staphylococcus aureus subsp}
SCOP: d.267.1.1 PDB: 2ffm_A
Length = 91
Score = 28.5 bits (64), Expect = 3.1
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 893 VCNIGHFDNEIEVEKLKKYKWENIKPQVDHII 924
V +I H + I V+K WE + P+V+ +
Sbjct: 51 VKSIFHVMDFISVDKENDANWETVLPKVEAVF 82
>1zoi_A Esterase; alpha/beta hydrolase fold; 1.60A {Pseudomonas putida}
PDB: 4dgq_A
Length = 276
Score = 29.9 bits (68), Expect = 3.5
Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 13/67 (19%)
Query: 152 VPKNTIIIHGELDEIIPLKDVFLWANPLDIP---VVVIPESVSEGH--PDKIADQISDAI 206
P +++HG+ D+I+P ++ + + L +P + H P AD I+ +
Sbjct: 217 QP--VLVMHGDDDQIVPYENSGVLSAKL-LPNGALKTYKGY---PHGMPTTHADVINADL 270
Query: 207 LDEIFLK 213
L F++
Sbjct: 271 LA--FIR 275
>1vkh_A Putative serine hydrolase; structural genomics, joint center
structural genomics, JCSG, protein structure initiative,
PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae}
SCOP: c.69.1.32
Length = 273
Score = 30.0 bits (67), Expect = 3.5
Identities = 23/188 (12%), Positives = 59/188 (31%), Gaps = 46/188 (24%)
Query: 46 GGTMDNKVVQTL-----VRVMLSLGYISIRMNFRGVGASSGTYDSGNGETDDMEILLRYI 100
G T +++ L L + + + V G Y L+ +
Sbjct: 124 GATFIWQILAALKDPQEKMSEAQLQMLGLLQIVKRVFLLDGIYS------------LKEL 171
Query: 101 QKKYPYLPIILAGFSFGTFVQAKLQKRLDKEISIKILILISVAVKKWLIPEVPKNTIIIH 160
+YP F+ F ++ +E +++ + A+ ++ I ++H
Sbjct: 172 LIEYP----EYDCFTRLAFPDGI---QMYEEEPSRVMPYVKKALSRFSID-----MHLVH 219
Query: 161 GELDEIIPLKDVFLWANPLD---IPVVVIPESVSEGHPDKIADQISDAILDEIFLKDLKA 217
DE++ L+ + L + + + H ++++ A
Sbjct: 220 SYSDELLTLRQTNCLISCLQDYQLSFKLYLDD-LGLH-------------NDVYKNGKVA 265
Query: 218 RVAAETLC 225
+ + +C
Sbjct: 266 KYIFDNIC 273
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics,
metal-binding, oxidoreductase, PSI-2, protein structure
initiative; 2.09A {Thermotoga maritima}
Length = 404
Score = 30.4 bits (69), Expect = 3.5
Identities = 22/114 (19%), Positives = 40/114 (35%), Gaps = 17/114 (14%)
Query: 809 AGKIAVIIGYGDVGKGSAQAMRALSA-QVWIIEIDPI-----------CALQAAMEGFLV 856
G VI+G G +G + ++ A +V + E + + E F+
Sbjct: 213 PGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTKENFVE 272
Query: 857 VTMEYAKKYG-DIFVTCTGNYHV----ITHDHMRDMKDQAIVCNIGHFDNEIEV 905
++Y G +F+ TG + I R A V + D +I +
Sbjct: 273 AVLDYTNGLGAKLFLEATGVPQLVWPQIEEVIWRARGINATVAIVARADAKIPL 326
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center
for structural genomics of infec diseases, csgid; 2.10A
{Salmonella enterica subsp} PDB: 3kbo_A
Length = 315
Score = 30.0 bits (68), Expect = 3.7
Identities = 15/103 (14%), Positives = 33/103 (32%), Gaps = 23/103 (22%)
Query: 808 IAGKIAVIIGYGDVGKGSAQAMRALSAQVWII-----EIDPICAL--QAAMEGFLVVTME 860
I+G G +G A++++A + + + + + FL T
Sbjct: 137 REEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELRAFLNQT-- 194
Query: 861 YAKKYGDIFVTC------TGNYHVITHDHMRDMKDQAIVCNIG 897
+ + T +I + + + D A V N+
Sbjct: 195 ------RVLINLLPNTAQT--VGIINSELLDQLPDGAYVLNLA 229
>1lnq_A MTHK channels, potassium channel related protein; rossman fold,
helix bundle, membrane protein; 3.30A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Length = 336
Score = 30.1 bits (68), Expect = 3.8
Identities = 8/50 (16%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 814 VIIGYGDVGKGSAQAMRALSAQVWIIEIDPICALQAAMEGFLVVTMEYAK 863
VI G+ + + +R ++V+++ D + G V + +
Sbjct: 119 VICGWSESTLECLRELRG--SEVFVLAEDENVRKKVLRSGANFVHGDPTR 166
>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein);
rossmann fold, NADPH, knotted protein, branched-chain
amino biosynthesis; 1.55A {Oryza sativa japonica group}
PDB: 3fr8_A* 1qmg_A* 1yve_I*
Length = 525
Score = 30.2 bits (68), Expect = 4.0
Identities = 22/125 (17%), Positives = 41/125 (32%), Gaps = 18/125 (14%)
Query: 761 LRRMFKEGKLSFPAINVNDSVTKSKFDNLYGCRESLIDG----IKRATDVMIAGKIAVII 816
+ + P+++ + SV + +L G E ++ G + K +I
Sbjct: 1 MVAAPPAVGAAMPSLDFDTSVFNKEKVSLAGHEEYIVRGGRNLFPLLPEAFKGIKQIGVI 60
Query: 817 GYGDVGKGSAQAMRALSAQVWIIEIDPICAL--------QAAMEGFLVVT-----MEYAK 863
G+G G AQ +R S +I L +A GF + +
Sbjct: 61 GWGSQGPAQAQNLRD-SLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETV 119
Query: 864 KYGDI 868
D+
Sbjct: 120 SGSDL 124
>1c4x_A BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoat hydrolase);
PCB degradation; 2.40A {Rhodococcus SP} SCOP: c.69.1.10
Length = 285
Score = 30.0 bits (68), Expect = 4.2
Identities = 11/67 (16%), Positives = 21/67 (31%), Gaps = 20/67 (29%)
Query: 156 TIIIHGELDEIIPLKDVFLWANPLDIP---VVVIPESVSEGH------PDKIADQISDAI 206
++ HG D I+PL + +VV+ GH D + + +
Sbjct: 228 VLVFHGRQDRIVPLDTSLYLTK--HLKHAELVVLDRC---GHWAQLERWDAMGPMLME-- 280
Query: 207 LDEIFLK 213
+
Sbjct: 281 ----HFR 283
>3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7;
2.10A {Thermoanaerobacterium SP}
Length = 346
Score = 29.8 bits (67), Expect = 4.3
Identities = 34/199 (17%), Positives = 52/199 (26%), Gaps = 70/199 (35%)
Query: 63 SLGYISIRMNFRGVGASSGTYDSGNGET----------------------DDMEILLRYI 100
+ G+ + M+ RG G S G T D L +
Sbjct: 132 AAGFTVVAMDVRGQGGQSQDVGGVTGNTLNGHIIRGLDDDADNMLFRHIFLDTAQLAGIV 191
Query: 101 QKKYPYLP--IILAGFSFG---TFVQAKLQKRLDKEISIK-ILILISVAVKKWLI----- 149
+ + G S G + A L+ R+ K +S L L
Sbjct: 192 MNMPEVDEDRVGVMGPSQGGGLSLACAALEPRVRKVVSEYPFLSDYKRVWDLDLAKNAYQ 251
Query: 150 ----------------PEV--------PKN--------TIIIHGELDEIIPLKDVFLWAN 177
EV KN ++ G +D++ P VF N
Sbjct: 252 EITDYFRLFDPRHERENEVFTKLGYIDVKNLAKRIKGDVLMCVGLMDQVCPPSTVFAAYN 311
Query: 178 PLDIPV--VVIPESVSEGH 194
+ V P+ GH
Sbjct: 312 NIQSKKDIKVYPD---YGH 327
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}
Length = 144
Score = 29.0 bits (66), Expect = 4.3
Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 7/87 (8%)
Query: 808 IAGKIAVIIGYGDVGKGSAQAMRALSAQVWII--EIDPICALQAAMEGFLVVTMEYAKKY 865
G +++G G + A +V + ID + A A + V +
Sbjct: 19 NGGNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAF-AEKYEYEYVLINDIDSL 77
Query: 866 ---GDIFVTCTG-NYHVITHDHMRDMK 888
D+ +T T ++ + K
Sbjct: 78 IKNNDVIITATSSKTPIVEERSLMPGK 104
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein
structure initiative, PSI, structural genomics; 1.70A
{Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A
1zwl_A*
Length = 200
Score = 29.3 bits (66), Expect = 5.0
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 7/48 (14%)
Query: 430 DTYGGAAPHGGGAFSGKD----PSKIDRSAA-YVGRYIAKNIVAANLA 472
+T GG P+G F+G D + + + +G+ +A+ A L
Sbjct: 154 ETRGGGTPYGASHFAGADGKRSLDEHELTLCRALGKRLAE--TAGKLG 199
>1lns_A X-prolyl dipeptidyl aminopetidase; alpha beta hydrolase fold; 2.20A
{Lactococcus lactis} SCOP: a.40.2.1 b.18.1.13 c.69.1.21
Length = 763
Score = 30.1 bits (67), Expect = 5.1
Identities = 8/42 (19%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 65 GYISIRMNFRGVGASSGTYDS-GNGETDDMEILLRYIQKKYP 105
G+ SI + G +S G S + M ++ ++ +
Sbjct: 281 GFASIYVAGVGTRSSDGFQTSGDYQQIYSMTAVIDWLNGRAR 322
>3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga
maritima} PDB: 3doi_A
Length = 380
Score = 29.7 bits (66), Expect = 5.1
Identities = 13/99 (13%), Positives = 30/99 (30%), Gaps = 5/99 (5%)
Query: 84 DSGNGETDDMEILLRYIQKKYPYLP--IILAGFSFGTFVQAKLQKRLDKEISIKILILIS 141
+ + ++R + +Y I + G S G + + I I
Sbjct: 238 FNPEKPLLAVIKIIRKLLDEYNIDENRIYITGLSMGGYGTWTAIMEFPELF--AAAIPIC 295
Query: 142 -VAVKKWLIPEVPKNTIIIHGELDEIIPLKDVFLWANPL 179
+ + H E D ++P+++ + L
Sbjct: 296 GGGDVSKVERIKDIPIWVFHAEDDPVVPVENSRVLVKKL 334
>3tjm_A Fatty acid synthase; thioesterase domain, fatty acid synthesis,
hydrolase-hydrola inhibitor complex; HET: 7FA; 1.48A
{Homo sapiens} PDB: 1xkt_A
Length = 283
Score = 29.5 bits (66), Expect = 5.4
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 91 DDM-EILLRYIQKKYPYLPIILAGFSFGTFV----QAKLQKRLDKEISIKILILI 140
+ + I++ P P +AG+S+G V ++LQ + + L L
Sbjct: 66 HSLAAYYIDCIRQVQPEGPYRVAGYSYGACVAFEMCSQLQAQQSPAPTHNSLFLF 120
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre,
flavoproteins, lactamase-fold; HET: FMN; 2.5A
{Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Length = 402
Score = 29.8 bits (67), Expect = 5.4
Identities = 17/137 (12%), Positives = 40/137 (29%), Gaps = 23/137 (16%)
Query: 73 FRGVGASSGTYDSGNGETDDMEILLRYIQKKYPYLPIILAGFSFGTFVQAKLQKRLDKEI 132
F A+S + + Y Y I+ + ++ + +
Sbjct: 167 FGQNIAASERFSDQIPVHTLERAMREY------YANIVNP---YAPQTLKAIETLVGAGV 217
Query: 133 SIKILILISVAVKKWLIPEVPKNTIIIHGELDEIIPLKDVFLWANPLDIPVVVIPESVSE 192
+ + + P + +I G ++ +A VVI
Sbjct: 218 APEFI--------------CPDHGVIFRGADQCTFAVQKYVEYAEQKPTNKVVIFYDSMW 263
Query: 193 GHPDKIADQISDAILDE 209
+K+A ++++ DE
Sbjct: 264 HSTEKMARVLAESFRDE 280
>3thi_A Protein (thiaminase I); thiamin degradation, transferase; 2.00A
{Bacillus subtilis} SCOP: c.94.1.1 PDB: 2thi_A 4thi_A
Length = 371
Score = 29.6 bits (66), Expect = 5.4
Identities = 27/142 (19%), Positives = 39/142 (27%), Gaps = 23/142 (16%)
Query: 142 VAVKKWLIPEVPKNTIIIHGELDEIIPLKDVFLWANPLDIPVVVIPESVSEGHPDKIADQ 201
+ +K + P VP + D + P + + P D
Sbjct: 1 ITLKVAIYPYVPDPARFQAA-------VLDQWQRQEP-GVKLEFTDWDSYSADPPDDLDV 52
Query: 202 ISDAILDEIFLKDLKARVAAETLCNNNLIVLSGEITTDANIDYVNIVRKTIKDIGYNNID 261
LD IFL ++ G D D + + K N
Sbjct: 53 FV---LDSIFLSHFVD---------AGYLLPFGSQDIDQAEDVLPFALQGAK---RNGEV 97
Query: 262 YGIDYKSCAVLLIYNKQSLDIA 283
YG+ C LL Y K L I
Sbjct: 98 YGLPQILCTNLLFYRKGDLKIG 119
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A
{Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A
1pl6_A* 3qe3_A
Length = 356
Score = 29.5 bits (67), Expect = 6.1
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 799 GIKRATDVMIAGKIAVIIGYGDVGKGSAQAMRALSA-QVWIIEIDPICALQAAME 852
+R G ++ G G +G + +A+ A QV + ++ L A E
Sbjct: 163 ACRRGGVT--LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATR-LSKAKE 214
>3h75_A Periplasmic sugar-binding domain protein; protein structure
initiative II (PSI II), sugar binding PROT alpha/beta
fold; 1.60A {Pseudomonas fluorescens pf-5}
Length = 350
Score = 29.4 bits (66), Expect = 6.7
Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
Query: 797 IDGIKRATDVMIAGKIAVIIGYGDVGKGSAQAMRALSAQVWIIEIDPICALQAAMEGFLV 856
++ A +I GK++V+ G G A+ AL ++ + + F
Sbjct: 240 VNSSPEALQALIDGKLSVLEA-GHFTLG-GWALVALHDDALGLDARRLGGPDWQLSLFQA 297
Query: 857 VTMEYAKKY 865
+T A++
Sbjct: 298 LTPAQARQL 306
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural
genomics, PSI-2, P structure initiative; 1.90A
{Ralstonia solanacearum}
Length = 352
Score = 29.1 bits (66), Expect = 7.1
Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 14/97 (14%)
Query: 808 IAGKIAVIIGYGDVGKGSAQAMRALSAQV--WIIEIDPICALQAAME-GF-LVVTMEYAK 863
+ G+ I GYG +G+ A RA V W + + A GF + + +
Sbjct: 158 LKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVW----GRENSKERARADGFAVAESKDALF 213
Query: 864 KYGDIFVT--CTGN---YHVITHDHMRDMKDQAIVCN 895
+ D ++ N +IT + MK A+ N
Sbjct: 214 EQSD-VLSVHLRLNDETRSIITVADLTRMKPTALFVN 249
>2k1h_A Uncharacterized protein Ser13; structural genomics, unknown
function, PSI-2, protein struct initiative; NMR
{Staphylococcus epidermidis}
Length = 94
Score = 27.4 bits (61), Expect = 7.5
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 893 VCNIGHFDNEIEVEKLKKYKWENIKPQVDHII 924
V +I + + I ++K W + PQ+++
Sbjct: 51 VKSIFYVLDFISIDKEDNANWNELLPQIENTF 82
>2y1e_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase,
DOXP/MEP pathway; 1.65A {Mycobacterium tuberculosis}
PDB: 2jcv_A* 2jcz_A* 2jd2_A 2jd1_A 2y1d_A* 2y1c_A
2y1f_A* 2y1g_A* 3ras_A* 4a03_A* 4aic_A* 2jcx_A* 2jcy_A
2jd0_A* 2c82_A
Length = 398
Score = 29.0 bits (66), Expect = 8.3
Identities = 6/49 (12%), Positives = 15/49 (30%), Gaps = 5/49 (10%)
Query: 179 LDIPVVVIPESVSEGHPDKIADQISDAILDEIFLKDLKARVAAETLCNN 227
I ++ V + + +D++ AR A+ +
Sbjct: 354 PAIVGII--ADVLHAADQWAVEPAT---VDDVLDAQRWARERAQRAVSG 397
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter,
adenosine triphosph archaeal proteins, cation transport
proteins; 10.00A {Archaeoglobus fulgidus}
Length = 645
Score = 29.4 bits (67), Expect = 8.4
Identities = 9/19 (47%), Positives = 12/19 (63%), Gaps = 3/19 (15%)
Query: 482 AIGVAKPTSIMVTSFGSGK 500
A G+A PT++ V G GK
Sbjct: 291 AFGLATPTALTV---GMGK 306
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding,
hydrolase, ION transp magnesium, Cu+, membrane,
metal-binding; 3.20A {Legionella pneumophila subsp}
Length = 736
Score = 29.4 bits (67), Expect = 8.4
Identities = 11/19 (57%), Positives = 13/19 (68%), Gaps = 3/19 (15%)
Query: 482 AIGVAKPTSIMVTSFGSGK 500
A+G+A P SIMV G GK
Sbjct: 385 ALGLATPMSIMV---GVGK 400
>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor
ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A
{Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB:
1dap_A* 2dap_A* 3dap_A*
Length = 320
Score = 29.1 bits (65), Expect = 8.4
Identities = 17/105 (16%), Positives = 33/105 (31%), Gaps = 23/105 (21%)
Query: 807 MIAGKIAVIIGYGDVGKGSAQAMRALSAQVWIIEIDPICALQAAMEGFLVVTMEYAKKYG 866
M ++A I+GYG++G+ + + Q M+ + +
Sbjct: 1 MTNIRVA-IVGYGNLGRSVEKLIAK----------------QPDMDLVGIFSRRATLDTK 43
Query: 867 DIFVTCTGNYHVITHDHMRDMKDQAIVCNIGHFDNEIEVEKLKKY 911
T + V D D D +C D + K ++
Sbjct: 44 ------TPVFDVADVDKHADDVDVLFLCMGSATDIPEQAPKFAQF 82
>1uqw_A Putative binding protein YLIB; Zn binding protein, transport,
lipoprotein, bacterial targets at IGS-CNRS, france,
BIGS, structural genomics; 2.72A {Escherichia coli}
SCOP: c.94.1.1
Length = 509
Score = 28.8 bits (65), Expect = 9.4
Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 24/96 (25%)
Query: 850 AMEGFLVVTMEYAKKYGDIFVT---CTGNYHVITHDHMRDMKDQAIVCNIGHFDNEIEVE 906
A +++ +KYG TG Y + T + + ++V+
Sbjct: 156 AHPATAMISPAALEKYGKEIGFYPVGTGPYELDTWNQ----------------TDFVKVK 199
Query: 907 KLKKYKWENIKPQVDHIIFPDGKKIILLAEGRLVNL 942
K Y W+ P++D I + + + R L
Sbjct: 200 KFAGY-WQPGLPKLDSITW----RPVADNNTRAAML 230
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary
protein KEFF; potassium channel regulation, domains,
antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli}
PDB: 3eyw_A* 3l9x_A*
Length = 413
Score = 29.0 bits (65), Expect = 9.5
Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 7/54 (12%)
Query: 814 VIIGYGDVGKGSAQAMRALSAQVWIIEIDPICALQAAMEGFLVVTMEYAKKYGD 867
+I G+G G+ + + + + ++ +++ DP G V YGD
Sbjct: 8 IIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVF-------YGD 54
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.138 0.404
Gapped
Lambda K H
0.267 0.0774 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 16,193,468
Number of extensions: 1054041
Number of successful extensions: 3045
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2957
Number of HSP's successfully gapped: 184
Length of query: 1027
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 924
Effective length of database: 3,825,930
Effective search space: 3535159320
Effective search space used: 3535159320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.6 bits)