BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1521
(175 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DM8|A Chain A, Solution Structure Of The Eighth Pdz Domain Of Human
Inad- Like Protein
Length = 116
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 38/52 (73%)
Query: 45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
I++H++Y EGAAA+D RL GDQILE+ G D RN +H +A+ LR TP K +
Sbjct: 45 IVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTPQKVR 96
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 7 GIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
G AA DGRL GDQI+ V+G D+R+ S EE T ++
Sbjct: 54 GAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALR 89
>pdb|2OPG|A Chain A, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
pdb|2OPG|B Chain B, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
Length = 98
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 38/56 (67%)
Query: 41 MKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
+ G I++H++Y EGAA KD RL GDQILE+ G D R TH +A+ LR TP + +
Sbjct: 28 LLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQRVR 83
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 7 GIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
G A DGRL GDQI+ V+G D+R + +E +++
Sbjct: 41 GAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLR 76
>pdb|2QG1|A Chain A, Crystal Structure Of The 11th Pdz Domain Of Mpdz (Mupp1)
Length = 92
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 31/39 (79%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
V GGIA DGRL++GDQI+ V+G DVR+ +QE VA ++K
Sbjct: 37 VKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLK 75
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 26/48 (54%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT 91
G+ V DI G A D RL GDQIL + GED RN T A L+ +
Sbjct: 30 GVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCS 77
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 23/30 (76%)
Query: 144 VELTKKAGKGFGLSLVGRKQGPGVFISDLV 173
+ L KK GKG GLS+VG++ GVF+SD+V
Sbjct: 8 IGLQKKPGKGLGLSIVGKRNDTGVFVSDIV 37
>pdb|2FNE|A Chain A, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|B Chain B, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|C Chain C, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
Length = 117
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 32/47 (68%)
Query: 45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT 91
I V ++ +GAA++D RLK GDQI+ + G+ +TH +A+A L+ T
Sbjct: 55 IYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRT 101
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 7 GIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
G A+ DGRL +GDQI++V+G + + EE I+K
Sbjct: 64 GAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILK 99
>pdb|1Q7X|A Chain A, Solution Structure Of The Alternatively Spliced Pdz2
Domain (Pdz2b) Of Ptp-Bas (Hptp1e)
Length = 108
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 15 LLKGDQIMSVDGTDVRDKSQEEVATIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGE 74
L K D + + T + DK ++ GGI V + P+GAA D R+ GD++L + G
Sbjct: 15 LAKNDNSLGISVTVLFDKGGVN-TSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGV 73
Query: 75 DFRNITHAKAMAHLRLT 91
TH +A+ LR T
Sbjct: 74 SLEGATHKQAVETLRNT 90
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEE-VATIMKGGILVHDIYPEGAA 56
+P G A +DGR+ KGD++++V+G + + ++ V T+ G +VH + +G +
Sbjct: 50 IPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQS 103
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 92/245 (37%), Gaps = 79/245 (32%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQ-------EEVATIMK------------ 42
+ +PGG AA DGRL D I+ V+ DVR+ + +E +I++
Sbjct: 95 KIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEK 154
Query: 43 ------------------GG-----------ILVHDIYPEGAAAKDARLKFGDQILELTG 73
GG I V I GAA KD RL+ GD+IL +
Sbjct: 155 VMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNS 214
Query: 74 EDFRNITHAKAMAHLRLTP-----AKAKPCPTVPSEPNANATTGEKTTFYFHFQVKLV-- 126
++ H A+A L+ T AKP S ++ A T++ H ++
Sbjct: 215 VGLEDVMHEDAVAALKNTYDVVYLKVAKPSNAYLS--DSYAPPDITTSYSQHLDNEISHS 272
Query: 127 ---------------------VLRDTVTKEDDLLEFVDVELTKKAGKGFGLSLVGRKQGP 165
V +D + +ED E + + + G G ++VG + G
Sbjct: 273 SYLGTDYPTAMTPTSPRRYSPVAKDLLGEEDIPREPRRI-VIHRGSTGLGFNIVGGEDGE 331
Query: 166 GVFIS 170
G+FIS
Sbjct: 332 GIFIS 336
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 11/93 (11%)
Query: 6 GGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG----ILVHDIYPEGAAAKDAR 61
GG A G L KGDQI+SV+G D+R+ S E+ A +K ++ PE +
Sbjct: 341 GGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYS----- 395
Query: 62 LKFGDQILELTGEDFRNITHAKAMAHLRLTPAK 94
+F +I +L E N + A LR P +
Sbjct: 396 -RFEAKIHDLR-EQLMNSSLGSGTASLRSNPKR 426
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
I + I P GAAA+D RL+ D IL + D R +TH+ A+ L+
Sbjct: 91 IFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALK 135
Score = 34.3 bits (77), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
GI + I G A L+ GDQIL + G D RN +H +A L+
Sbjct: 332 GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALK 377
>pdb|2DAZ|A Chain A, Solution Structure Of The 7th Pdz Domain Of Inad-Like
Protein
Length = 124
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
I V I PEG AA D R++ GD++LE+ + +H A A ++ P+K K
Sbjct: 53 IFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPSKVK 104
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 5 PGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
P G AA DGR+ GD+++ ++ + +S + + I+K
Sbjct: 60 PEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIK 97
>pdb|3PDZ|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e
pdb|3LNX|A Chain A, Second Pdz Domain From Human Ptp1e
pdb|3LNX|B Chain B, Second Pdz Domain From Human Ptp1e
pdb|3LNX|C Chain C, Second Pdz Domain From Human Ptp1e
pdb|3LNX|D Chain D, Second Pdz Domain From Human Ptp1e
pdb|3LNX|E Chain E, Second Pdz Domain From Human Ptp1e
pdb|3LNX|F Chain F, Second Pdz Domain From Human Ptp1e
pdb|3LNY|A Chain A, Second Pdz Domain From Human Ptp1e In Complex With
Ra-Gef2 Peptide
Length = 96
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 39 TIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT 91
++ GGI V + P+GAA D R+ GD++L + G TH +A+ LR T
Sbjct: 29 SVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNT 81
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEE-VATIMKGGILVHDIYPEGAA 56
+P G A +DGR+ KGD++++V+G + + ++ V T+ G +VH + +G +
Sbjct: 41 IPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQS 94
>pdb|1GM1|A Chain A, Second Pdz Domain (Pdz2) Of Ptp-Bl
Length = 94
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 39 TIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT 91
++ GGI V I P+GAA D R+ GD++L + G TH +A+ LR T
Sbjct: 28 SVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNT 80
Score = 35.0 bits (79), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEE-VATIMKGGILVHDIYPEG 54
+P G A +DGR+ KGD++++V+G + + ++ V T+ G +VH + +G
Sbjct: 40 IPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKG 91
>pdb|1D5G|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e Complexed With A Peptide
Length = 96
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 39 TIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT 91
++ GGI V + P+GAA D R+ GD++L + G TH +A+ LR T
Sbjct: 29 SVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNT 81
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEE-VATIMKGGILVHDIYPEGAA 56
+P G A +DGR+ KGD++++V+G + + ++ V T+ G +VH + +G +
Sbjct: 41 IPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQS 94
>pdb|2ENO|A Chain A, Solution Structure Of The Pdz Domain From Human
Synaptojanin 2 Binding Protein
Length = 120
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
GI V I GAAA D RL+ GD+IL + G+D +N+ H A+ R
Sbjct: 48 GIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFR 93
Score = 33.9 bits (76), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
R G AA DGRL +GD+I+SV+G D+++ ++ + +
Sbjct: 53 RIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFR 93
>pdb|2JIN|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2
Binding Protein
Length = 102
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
GI V I GAAA D RL+ GD+IL + G+D +N+ H A+ R
Sbjct: 40 GIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFR 85
Score = 34.3 bits (77), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
R G AA DGRL +GD+I+SV+G D+++ ++ + +
Sbjct: 45 RIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFR 85
>pdb|1VJ6|A Chain A, Pdz2 From Ptp-Bl In Complex With The C-Terminal Ligand
From The Apc Protein
Length = 102
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 39 TIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT 91
++ GGI V I P+GAA D R+ GD++L + G TH +A+ LR T
Sbjct: 36 SVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNT 88
Score = 35.0 bits (79), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEE-VATIMKGGILVHDIYPEG 54
+P G A +DGR+ KGD++++V+G + + ++ V T+ G +VH + +G
Sbjct: 48 IPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKG 99
>pdb|1OZI|A Chain A, The Alternatively Spliced Pdz2 Domain Of Ptp-Bl
Length = 99
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 39 TIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT 91
++ GGI V I P+GAA D R+ GD++L + G TH +A+ LR T
Sbjct: 33 SVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNT 85
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEE-VATIMKGGILVHDIYPEG 54
+P G A +DGR+ KGD++++V+G + + ++ V T+ G +VH + +G
Sbjct: 45 IPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKG 96
>pdb|2JIK|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2
Binding Protein
pdb|2JIK|B Chain B, Crystal Structure Of Pdz Domain Of Synaptojanin-2
Binding Protein
Length = 101
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
GI V I GAAA D RL+ GD+IL + G+D +N+ H A+ R
Sbjct: 38 GIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFR 83
Score = 34.3 bits (77), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
R G AA DGRL +GD+I+SV+G D+++ ++ + +
Sbjct: 43 RIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFR 83
>pdb|3R0H|A Chain A, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
pdb|3R0H|B Chain B, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
pdb|3R0H|C Chain C, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
pdb|3R0H|D Chain D, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
pdb|3R0H|E Chain E, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
pdb|3R0H|F Chain F, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
pdb|3R0H|G Chain G, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
pdb|3R0H|H Chain H, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
Length = 206
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 55/131 (41%), Gaps = 31/131 (23%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVPS 103
G ++ +YPEG A D RLK D I ++ G H +M L++
Sbjct: 46 GCVITHVYPEGQVAADKRLKIFDHICDINGTPI----HVGSMTTLKVH------------ 89
Query: 104 EPNANATTGEKTTFYFHFQVKLVVLRDTVTKEDDLLEFVDVELTKKAGKGFGLSLVGRKQ 163
TT EK V L V R + LE +V+L KKAGK GLSL +
Sbjct: 90 --QLFHTTYEKA-------VTLTVFR----ADPPELEKFNVDLMKKAGKELGLSLSPNEI 136
Query: 164 GPGVFISDLVS 174
G I+DL+
Sbjct: 137 --GCTIADLIQ 145
>pdb|3GSL|A Chain A, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
pdb|3GSL|B Chain B, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
Length = 196
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 56/138 (40%), Gaps = 48/138 (34%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRD-------KSQEEVATIMK------------ 42
+ +PGG AA DGRL D I+ V+ DVR+ ++ +E +I++
Sbjct: 41 KIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEK 100
Query: 43 ------------------GG-----------ILVHDIYPEGAAAKDARLKFGDQILELTG 73
GG I V I GAA KD RL+ GD+IL +
Sbjct: 101 VMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNS 160
Query: 74 EDFRNITHAKAMAHLRLT 91
++ H A+A L+ T
Sbjct: 161 VGLEDVMHEDAVAALKNT 178
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
I + I P GAAA+D RL+ D IL + D R +TH+ A+ L+
Sbjct: 37 IFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALK 81
>pdb|2KA9|A Chain A, Solution Structure Of Psd-95 Pdz12 Complexed With Cypin
Peptide
Length = 189
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 56/138 (40%), Gaps = 48/138 (34%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRD-------KSQEEVATIMK------------ 42
+ +PGG AA DGRL D I+ V+ DVR+ ++ +E +I++
Sbjct: 38 KIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEK 97
Query: 43 ------------------GG-----------ILVHDIYPEGAAAKDARLKFGDQILELTG 73
GG I V I GAA KD RL+ GD+IL +
Sbjct: 98 VMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNS 157
Query: 74 EDFRNITHAKAMAHLRLT 91
++ H A+A L+ T
Sbjct: 158 VGLEDVMHEDAVAALKNT 175
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
I + I P GAAA+D RL+ D IL + D R +TH+ A+ L+
Sbjct: 34 IFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALK 78
>pdb|2DLU|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Inad- Like Protein
Length = 111
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
VPGG+A DGRL GD I+ + GT+V+ + E+VA +++
Sbjct: 46 VPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLR 84
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
G++V I P G A +D RL+ GD IL++ G + + +T + LR
Sbjct: 39 GVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLR 84
>pdb|3ZRT|A Chain A, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|B Chain B, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|C Chain C, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|D Chain D, Crystal Structure Of Human Psd-95 Pdz1-2
Length = 199
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 55/138 (39%), Gaps = 48/138 (34%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQ-------EEVATIMK------------ 42
+ +PGG AA DGRL D I+ V+ DVR+ + +E +I++
Sbjct: 48 KIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEK 107
Query: 43 ------------------GG-----------ILVHDIYPEGAAAKDARLKFGDQILELTG 73
GG I V I GAA KD RL+ GD+IL +
Sbjct: 108 VMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNS 167
Query: 74 EDFRNITHAKAMAHLRLT 91
++ H A+A L+ T
Sbjct: 168 VGLEDVMHEDAVAALKNT 185
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
I + I P GAAA+D RL+ D IL + D R +TH+ A+ L+
Sbjct: 44 IFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALK 88
>pdb|2KOJ|A Chain A, Solution Structure Of Mouse Par-3 Pdz2 (Residues
450-558)
Length = 111
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
+P G A DGRL GD+++ V+G D+ KSQEEV ++++
Sbjct: 47 LPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLR 85
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT 91
I V +I P GAA +D RLK GD+++E+ G D + + ++ LR T
Sbjct: 41 IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRST 87
>pdb|2OGP|A Chain A, Solution Structure Of The Second Pdz Domain Of Par-3
Length = 97
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
+P G A DGRL GD+++ V+G D+ KSQEEV ++++
Sbjct: 41 LPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLR 79
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT 91
I V +I P GAA +D RLK GD+++E+ G D + + ++ LR T
Sbjct: 35 IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRST 81
>pdb|1UJU|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 111
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
GI + + P GAA +D RL+ G ++LE+ + +TH +A+ LR
Sbjct: 45 GIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLR 90
>pdb|2Q9V|A Chain A, Crystal Structure Of The C890s Mutant Of The 4th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
Length = 90
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
VP G A TDGRL GD+++SVDGT V KS + V +M+
Sbjct: 35 VPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQ 73
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 45 ILVHDIYPEGAAAKDARLKFGDQILELTG 73
I + I P GAA D RL+ GD+++ + G
Sbjct: 29 IYIGHIVPLGAADTDGRLRSGDELISVDG 57
>pdb|1X6D|A Chain A, Solution Structures Of The Pdz Domain Of Human
Interleukin- 16
Length = 119
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 10/82 (12%)
Query: 18 GDQIMSVDGTDVRDKSQEEVATI---MKGG-------ILVHDIYPEGAAAKDARLKFGDQ 67
G + +DG V +EE A + + GG I VH ++P G A+++ ++ G++
Sbjct: 7 GATLKQLDGIHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNE 66
Query: 68 ILELTGEDFRNITHAKAMAHLR 89
+L + G+ + TH A+A LR
Sbjct: 67 VLSINGKSLKGTTHHDALAILR 88
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 10/41 (24%), Positives = 26/41 (63%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
R P G+A+ +G + KG++++S++G ++ + + I++
Sbjct: 48 RVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILR 88
>pdb|1WFV|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Human
Membrane Associated Guanylate Kinase Inverted-2
(Kiaa0705 Protein)
Length = 103
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 29/41 (70%)
Query: 45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAM 85
+ V + +G A ++ R++ GDQI+E+ GE R++THA+A+
Sbjct: 38 LYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAI 78
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 1 MRAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
+R G A +GR+ GDQI+ ++G RD + ++K G
Sbjct: 41 LRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSG 84
>pdb|2KOM|A Chain A, Solution Structure Of Humar Par-3b Pdz2 (Residues 451-549)
Length = 121
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
+P G A DGRL GD+++ V+G D+ KSQEEV ++++
Sbjct: 66 LPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLR 104
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT 91
I V +I P GAA +D RLK GD+++E+ G D + + ++ LR T
Sbjct: 60 IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRST 106
>pdb|2WL7|A Chain A, Crystal Structure Of The Psd93 Pdz1 Domain
Length = 102
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
GI + I P GAAA+D RL+ D IL + D ++H+KA+ L+
Sbjct: 40 GIFITKIIPGGAAAEDGRLRVNDCILRVNEVDVSEVSHSKAVEALK 85
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
+ +PGG AA DGRL D I+ V+ DV + S + +K
Sbjct: 45 KIIPGGAAAEDGRLRVNDCILRVNEVDVSEVSHSKAVEALK 85
>pdb|3K82|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 98
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 26/39 (66%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
+ GG A G L KGDQI+SV+G D+R+ S E+ A +K
Sbjct: 38 LAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALK 76
Score = 34.7 bits (78), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
GI + I G A L+ GDQIL + G D RN +H +A L+
Sbjct: 31 GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALK 76
>pdb|2HE2|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
pdb|2HE2|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
Length = 102
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG----ILVHDIYPEGAAAKD 59
+ GG A G L +GDQI+SV+G D+R S E+ A +KG ++ PE A +
Sbjct: 35 LAGGPADLSGELQRGDQILSVNGIDLRGASHEQAAAALKGAGQTVTIIAQYQPEDYARFE 94
Query: 60 ARL 62
A++
Sbjct: 95 AKI 97
Score = 34.3 bits (77), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
GI V I G A L+ GDQIL + G D R +H +A A L+
Sbjct: 28 GIFVSFILAGGPADLSGELQRGDQILSVNGIDLRGASHEQAAAALK 73
>pdb|1BE9|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95 In
Complex With A C-Terminal Peptide Derived From Cript.
pdb|1BFE|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95
Length = 119
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 25/37 (67%)
Query: 6 GGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
GG A G L KGDQI+SV+G D+R+ S E+ A +K
Sbjct: 48 GGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALK 84
Score = 35.0 bits (79), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
GI + I G A L+ GDQIL + G D RN +H +A L+
Sbjct: 39 GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALK 84
>pdb|3I4W|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|B Chain B, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|C Chain C, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|D Chain D, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 104
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 26/39 (66%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
+ GG A G L KGDQI+SV+G D+R+ S E+ A +K
Sbjct: 43 LAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALK 81
Score = 34.7 bits (78), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
GI + I G A L+ GDQIL + G D RN +H +A L+
Sbjct: 36 GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALK 81
>pdb|1ZOK|A Chain A, Pdz1 Domain Of Synapse Associated Protein 97
Length = 93
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
I + I GAAA+D RL+ D IL + D R++TH+KA+ L+
Sbjct: 33 IFITKIITGGAAAQDGRLRVNDCILRVNEADVRDVTHSKAVEALK 77
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
+ + GG AA DGRL D I+ V+ DVRD + + +K
Sbjct: 37 KIITGGAAAQDGRLRVNDCILRVNEADVRDVTHSKAVEALK 77
>pdb|2KOH|A Chain A, Nmr Structure Of Mouse Par3-Pdz3 In Complex With
Ve-Cadherin C-Terminus
Length = 111
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 31 DKSQEEVATIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
++S+E A + GI V I GAA+KD RL+ DQ++ + GE + +AM LR
Sbjct: 30 NRSKENHADL---GIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKANQEAMETLR 85
Score = 30.8 bits (68), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
+ GG A+ DGRL DQ+++V+G + K+ +E ++
Sbjct: 47 INGGAASKDGRLRVNDQLIAVNGESLLGKANQEAMETLR 85
>pdb|3RL7|B Chain B, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|A Chain A, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|C Chain C, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|D Chain D, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|E Chain E, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|F Chain F, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
Length = 107
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Query: 45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHL-------RLTPAKAKP 97
I + I GAAA+D RL+ D IL + D R++TH+KA+ L RL + KP
Sbjct: 43 IFITKIITGGAAAQDGRLRVNDCILRVNEVDVRDVTHSKAVEALKEAGSIVRLYVKRRKP 102
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
+ + GG AA DGRL D I+ V+ DVRD + + +K
Sbjct: 47 KIITGGAAAQDGRLRVNDCILRVNEVDVRDVTHSKAVEALK 87
>pdb|2K1Z|A Chain A, Solution Structure Of Par-3 Pdz3
pdb|2K20|A Chain A, Solution Structure Of Par-3 Pdz3 In Complex With Pten
Peptide
Length = 104
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 31 DKSQEEVATIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
++S+E A + GI V I GAA+KD RL+ DQ++ + GE + +AM LR
Sbjct: 27 NRSKENHADL---GIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKANQEAMETLR 82
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
+ GG A+ DGRL DQ+++V+G + K+ +E ++
Sbjct: 44 INGGAASKDGRLRVNDQLIAVNGESLLGKANQEAMETLR 82
>pdb|1TP3|A Chain A, Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv
Peptide Ligand
pdb|1TP5|A Chain A, Crystal Structure Of Pdz3 Domain Of Psd-95 Protein
Complexed With A Peptide Ligand Kketwv
pdb|1TQ3|A Chain A, Higher Resolution Crystal Structure Of The Third Pdz
Domain Of Post Synaptic Psd-95 Protein
Length = 119
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 25/37 (67%)
Query: 6 GGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
GG A G L KGDQI+SV+G D+R+ S E+ A +K
Sbjct: 48 GGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALK 84
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
GI + I G A L+ GDQIL + G D RN +H +A L+
Sbjct: 39 GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALK 84
>pdb|1RGR|A Chain A, Cyclic Peptides Targeting Pdz Domains Of Psd-95:
Structural Basis For Enhanced Affinity And Enzymatic
Stability
Length = 99
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
I + I P GAAA+D RL+ D IL + D R +TH+ A+ L+
Sbjct: 33 IFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALK 77
Score = 33.9 bits (76), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
+ +PGG AA DGRL D I+ V+ DVR+ + +K
Sbjct: 37 KIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALK 77
>pdb|1KEF|A Chain A, Pdz1 Of Sap90
Length = 93
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
I + I P GAAA+D RL+ D IL + D R +TH+ A+ L+
Sbjct: 33 IFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALK 77
Score = 33.9 bits (76), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
+ +PGG AA DGRL D I+ V+ DVR+ + +K
Sbjct: 37 KIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALK 77
>pdb|1IU0|A Chain A, The First Pdz Domain Of Psd-95
pdb|1IU2|A Chain A, The First Pdz Domain Of Psd-95
Length = 91
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
I + I P GAAA+D RL+ D IL + D R +TH+ A+ L+
Sbjct: 34 IFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALK 78
Score = 33.9 bits (76), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
+ +PGG AA DGRL D I+ V+ DVR+ + +K
Sbjct: 38 KIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALK 78
>pdb|1X5N|A Chain A, Solution Structure Of The Second Pdz Domain Of Harmonin
Protein
Length = 114
Score = 39.7 bits (91), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 40 IMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
I K GI + + P G+ + + L+ GDQI+E+ G DF N+ H +A+ L+
Sbjct: 38 IQKPGIFISHVKP-GSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLK 86
Score = 26.9 bits (58), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 5 PGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
PG ++A G L GDQI+ V+G D + +E ++K
Sbjct: 50 PGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLK 86
>pdb|3AXA|A Chain A, Crystal Structure Of Afadin Pdz Domain In Complex With
The C-Terminal Peptide From Nectin-3
pdb|3AXA|B Chain B, Crystal Structure Of Afadin Pdz Domain In Complex With
The C-Terminal Peptide From Nectin-3
Length = 106
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 24/38 (63%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIM 41
V GG A DGRL GDQ++SVDG + SQE A +M
Sbjct: 46 VKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELM 83
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKA 84
GI V + GAA D RL GDQ+L + G ++ +A
Sbjct: 39 GIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERA 79
>pdb|1T2M|A Chain A, Solution Structure Of The Pdz Domain Of Af-6
Length = 101
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 24/38 (63%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIM 41
V GG A DGRL GDQ++SVDG + SQE A +M
Sbjct: 40 VKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELM 77
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKA 84
GI V + GAA D RL GDQ+L + G ++ +A
Sbjct: 33 GIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERA 73
>pdb|2AIN|A Chain A, Solution Structure Of The Af-6 Pdz Domain Complexed With
The C-Terminal Peptide From The Bcr Protein
Length = 93
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 24/38 (63%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIM 41
V GG A DGRL GDQ++SVDG + SQE A +M
Sbjct: 40 VKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELM 77
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKA 84
GI V + GAA D RL GDQ+L + G ++ +A
Sbjct: 33 GIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERA 73
>pdb|1XZ9|A Chain A, Structure Of Af-6 Pdz Domain
pdb|2EXG|A Chain A, Making Protein-protein Interactions Drugable: Discovery
Of Low-molecular-weight Ligands For The Af6 Pdz Domain
Length = 101
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 24/38 (63%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIM 41
V GG A DGRL GDQ++SVDG + SQE A +M
Sbjct: 46 VKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELM 83
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKA 84
GI V + GAA D RL GDQ+L + G ++ +A
Sbjct: 39 GIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERA 79
>pdb|2KBS|A Chain A, Solution Structure Of Harmonin Pdz2 In Complex With The
Carboxyl Tail Peptide Of Cadherin23
Length = 92
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 40 IMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
I K GI + + P G+ + + L+ GDQI+E+ G DF N+ H +A+ L+
Sbjct: 24 IQKPGIFISHVKP-GSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLK 72
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 5 PGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
PG ++A G L GDQI+ V+G D + +E ++K
Sbjct: 36 PGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLK 72
>pdb|1UF1|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Kiaa1526 Protein
Length = 128
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVPS 103
GI + + P G+ A+ + LK GDQILE+ G F NI H +A+ L+ + V
Sbjct: 47 GIYITGVDP-GSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKSSRHLILTVKDVGR 105
Query: 104 EPNANATTGE 113
P+A T E
Sbjct: 106 LPHARTTVDE 115
>pdb|2EHR|A Chain A, Solution Structure Of The Sixth Pdz Domain Of Human
Inad- Like Protein
Length = 117
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 29/46 (63%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
GI + + + A K LK GD+ILE++G D +N +H++A+ ++
Sbjct: 51 GIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIK 96
>pdb|2VRF|A Chain A, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|B Chain B, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|C Chain C, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|D Chain D, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
Length = 95
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 41 MKGG------ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
+KGG IL+ I+P AA + L+ GD IL + G D R TH +A+ L+
Sbjct: 21 IKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQATHDQAVQALK 75
Score = 30.8 bits (68), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 7 GIAATDGRLLK-GDQIMSVDGTDVRDKSQEEVATIMK 42
G+AA R L+ GD I+SV+GTD+R + ++ +K
Sbjct: 39 GLAADQSRALRLGDAILSVNGTDLRQATHDQAVQALK 75
>pdb|2DKR|A Chain A, Solution Structure Of The Pdz Domain From Human Lin-7
Homolog B
Length = 93
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
R +PGG+A G L +GDQ++SV+G V + E+ ++K
Sbjct: 36 RVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLK 76
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 23/52 (44%)
Query: 45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
I + + P G A + LK GDQ+L + G H KA+ L+ K
Sbjct: 32 IYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVK 83
>pdb|2FE5|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Dlg3
Length = 94
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 29/47 (61%)
Query: 45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT 91
I + I GAA KD RL+ GD++L + + +++ H +A+A L+ T
Sbjct: 35 IYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNT 81
Score = 34.7 bits (78), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
+ + GG A DGRL GD++++V+ T+++D EE +K
Sbjct: 39 KIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLK 79
>pdb|3CBX|A Chain A, The Dvl2 Pdz Domain In Complex With The C1 Inhibitory
Peptide
pdb|3CBX|B Chain B, The Dvl2 Pdz Domain In Complex With The C1 Inhibitory
Peptide
Length = 105
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVP 102
GGI + I GA A D R++ GD +L++ +F N+++ A+ LR KP P V
Sbjct: 33 GGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLR--DIVHKPGPIVL 90
Query: 103 SEPNANATTGEKTTFYFHF 121
+ A +G +Y F
Sbjct: 91 TV----AKSGGGWKWYGWF 105
Score = 26.6 bits (57), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 6 GGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
GG A DGR+ GD ++ V+ + + S ++ +++
Sbjct: 43 GGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLR 79
>pdb|3CBZ|A Chain A, The Dvl2 Pdz Domain In Complex With The N2 Inhibitory
Peptide
Length = 108
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVP 102
GGI + I GA A D R++ GD +L++ +F N+++ A+ LR KP P V
Sbjct: 33 GGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLR--DIVHKPGPIVL 90
Query: 103 SEPNANATTGEKTTF 117
+ + +G +
Sbjct: 91 TVAKSGGGSGNEVWI 105
Score = 26.2 bits (56), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 6 GGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
GG A DGR+ GD ++ V+ + + S ++ +++
Sbjct: 43 GGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLR 79
>pdb|1WG6|A Chain A, Solution Structure Of Pdz Domain In Protein Xp_110852
Length = 127
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 26 GTDVRDKSQEEVATIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAM 85
G ++ E T + GI + I GAA KD RL+ DQ++ + GE ++ +AM
Sbjct: 40 GVSLKGNKSRETGTDL--GIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAM 97
Query: 86 AHLR 89
LR
Sbjct: 98 ETLR 101
Score = 29.6 bits (65), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
+ GG A DGRL DQ+++V+G + KS E ++
Sbjct: 63 IHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLR 101
>pdb|3CH8|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein
Length = 195
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
GI V + PEG A+K L+ GD+I++ G F NI H +A++ L+
Sbjct: 26 GIFVTRVQPEGPASK--LLQPGDKIIQANGYSFINIEHGQAVSLLK 69
>pdb|2QBW|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein
Length = 195
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
GI V + PEG A+K L+ GD+I++ G F NI H +A++ L+
Sbjct: 25 GIFVTRVQPEGPASK--LLQPGDKIIQANGYSFINIEHGQAVSLLK 68
>pdb|2REY|A Chain A, Crystal Structure Of The Pdz Domain Of Human Dishevelled 2
(Homologous To Drosophila Dsh)
Length = 100
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTV 101
GGI + I GA A D R++ GD +L++ +F N+++ A+ LR KP P V
Sbjct: 33 GGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLR--DIVHKPGPIV 89
Score = 26.6 bits (57), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 6 GGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
GG A DGR+ GD ++ V+ + + S ++ +++
Sbjct: 43 GGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLR 79
>pdb|3CC0|A Chain A, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
pdb|3CC0|B Chain B, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
pdb|3CC0|C Chain C, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
Length = 108
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTV 101
GGI + I GA A D R++ GD +L++ +F N+++ A+ LR KP P V
Sbjct: 33 GGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLR--DIVHKPGPIV 89
Score = 26.6 bits (57), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 6 GGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
GG A DGR+ GD ++ V+ + + S ++ +++
Sbjct: 43 GGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLR 79
>pdb|1MFG|A Chain A, The Structure Of Erbin Pdz Domain Bound To The Carboxy-
Terminal Tail Of The Erbb2 Receptor
pdb|1MFL|A Chain A, The Structure Of Erbin Pdz Domain Bound To The Carboxy-
Terminal Tail Of The Erbb2 Receptor
Length = 95
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
GI V + PEG A+K L+ GD+I++ G F NI H +A++ L+
Sbjct: 36 GIFVTRVQPEGPASK--LLQPGDKIIQANGYSFINIEHGQAVSLLK 79
>pdb|1IHJ|A Chain A, Crystal Structure Of The N-Terminal Pdz Domain Of Inad
In Complex With A Norpa C-Terminal Peptide
pdb|1IHJ|B Chain B, Crystal Structure Of The N-Terminal Pdz Domain Of Inad
In Complex With A Norpa C-Terminal Peptide
Length = 98
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITH 81
GI + I P+ A RLK GD+IL L G+D RN T
Sbjct: 38 GIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTE 75
Score = 33.5 bits (75), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
VP A GRL GD+I+S++G DVR+ +++ V ++K
Sbjct: 45 VPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIK 83
>pdb|3CBY|A Chain A, The Dvl2 Pdz Domain In Complex With The N1 Inhibitory
Peptide
pdb|3CBY|B Chain B, The Dvl2 Pdz Domain In Complex With The N1 Inhibitory
Peptide
Length = 108
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTV 101
GGI + I GA A D R++ GD +L++ +F N+++ A+ LR KP P V
Sbjct: 33 GGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLR--DIVHKPGPIV 89
>pdb|2DB5|A Chain A, Solution Structure Of The First Pdz Domain Of Inad-Like
Protein
Length = 128
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDF-RNITHAKAMAHLRLT 91
I V D+ P A +D RLK DQIL + +NI+H +A+A L+ T
Sbjct: 56 IFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQT 103
>pdb|2KAW|A Chain A, Nmr Structure Of The Mdvl1 Pdz Domain In Complex With
Its Inhibitor
Length = 90
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPC 98
GGI + I GA A D R++ GD +L++ +F N+++ A+ LR ++ P
Sbjct: 29 GGIYIGSIMKGGAVAADGRIEPGDMLLQVNDVNFENMSNDDAVRVLREIVSQTGPI 84
Score = 26.6 bits (57), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 6 GGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
GG A DGR+ GD ++ V+ + + S ++ +++
Sbjct: 39 GGAVAADGRIEPGDMLLQVNDVNFENMSNDDAVRVLR 75
>pdb|2FCF|A Chain A, The Crystal Structure Of The 7th Pdz Domain Of Mpdz
(Mupp-1)
Length = 103
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
GI + + + A K+ LK GD+I+E+ G D R+ +H +A+ +R
Sbjct: 40 GIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIR 85
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 9 AATDGRLLKGDQIMSVDGTDVRDKSQEE-VATIMKGG 44
A +G L GD+I+ VDG D+RD S E+ V I K G
Sbjct: 52 AGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAG 88
>pdb|2BYG|A Chain A, 2nd Pdz Domain Of Discs Large Homologue 2
Length = 117
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT 91
I V I GAA KD RL+ GD++L + +TH +A+A L+ T
Sbjct: 56 IYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNT 102
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
+ + GG A DGRL GD+++ V+ + + + EE I+K
Sbjct: 60 KIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILK 100
>pdb|2IWQ|A Chain A, 7th Pdz Domain Of Multiple Pdz Domain Protein Mpdz
Length = 123
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
GI + + + A K+ LK GD+I+E+ G D R+ +H +A+ +R
Sbjct: 60 GIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIR 105
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 9 AATDGRLLKGDQIMSVDGTDVRDKSQEE-VATIMKGG 44
A +G L GD+I+ VDG D+RD S E+ V I K G
Sbjct: 72 AGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAG 108
>pdb|1MC7|A Chain A, Solution Structure Of Mdvl1 Pdz Domain
Length = 95
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPC 98
GGI + I GA A D R++ GD +L++ +F N+++ A+ LR ++ P
Sbjct: 26 GGIYIGSIMKGGAVAADGRIEPGDMLLQVNDVNFENMSNDDAVRVLREIVSQTGPI 81
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 6 GGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
GG A DGR+ GD ++ V+ + + S ++ +++
Sbjct: 36 GGAVAADGRIEPGDMLLQVNDVNFENMSNDDAVRVLR 72
>pdb|2I1N|A Chain A, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3
pdb|2I1N|B Chain B, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3
Length = 102
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
GI + I P GAAA D RL D +L + D + H++A+ L+
Sbjct: 35 GIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALK 80
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
+ +PGG AA DGRL D ++ V+ DV + +K
Sbjct: 40 KIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALK 80
>pdb|1WH1|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Kiaa1095
Protein
Length = 124
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVPS 103
GI + +I P AAKD R++ GD+I+++ G + +N A A+ LT + K + +
Sbjct: 49 GIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNREEAVAL----LTSEENKNFSLLIA 104
Query: 104 EP 105
P
Sbjct: 105 RP 106
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Query: 5 PGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATI 40
P IAA DGR+ +GD+I+ ++G +V+++ +E VA +
Sbjct: 57 PNSIAAKDGRIREGDRIIQINGIEVQNR-EEAVALL 91
>pdb|2H3L|A Chain A, Crystal Structure Of Erbin Pdz
pdb|2H3L|B Chain B, Crystal Structure Of Erbin Pdz
pdb|1N7T|A Chain A, Erbin Pdz Domain Bound To A Phage-Derived Peptide
Length = 103
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
GI V + PEG A+K L+ GD+I++ G F NI H +A++ L+
Sbjct: 44 GIFVTRVQPEGPASK--LLQPGDKIIQANGYSFINIEHGQAVSLLK 87
>pdb|3B76|A Chain A, Crystal Structure Of The Third Pdz Domain Of Human
Ligand-of-numb Protein-x (lnx1) In Complex With The
C-terminal Peptide From The Coxsackievirus And
Adenovirus Receptor
pdb|3B76|B Chain B, Crystal Structure Of The Third Pdz Domain Of Human
Ligand-of-numb Protein-x (lnx1) In Complex With The
C-terminal Peptide From The Coxsackievirus And
Adenovirus Receptor
Length = 118
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 26/38 (68%)
Query: 5 PGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
PGG+ + DGR+ GD +++VDG ++ + S+ E ++K
Sbjct: 62 PGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLK 99
Score = 33.9 bits (76), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPA 93
I V + P G ++D R+K GD +L + G + ++ ++A+A L+ T +
Sbjct: 55 IYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRTSS 103
>pdb|1WF8|A Chain A, Solution Structure Of The Pdz Domain Of
SpinophilinNEURABINII PROTEIN
Length = 107
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 38 ATIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK--- 94
A + K GI V + GAA +D R++ DQI+E+ G +T A LR T
Sbjct: 35 AGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRF 94
Query: 95 --AKPCPTVPS 103
+ P+ PS
Sbjct: 95 VIGREKPSGPS 105
Score = 30.4 bits (67), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 6 GGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
GG A DGR+ DQI+ VDG + +Q AT+++
Sbjct: 50 GGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLR 86
>pdb|2IWN|A Chain A, 3rd Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
Length = 97
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT 91
GI V I A D R++ GDQI+ + G + + T+ +A+ LR T
Sbjct: 34 GIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 81
Score = 30.4 bits (67), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 23/31 (74%)
Query: 12 DGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
DGR+ GDQI++VDGT+++ + ++ +++
Sbjct: 49 DGRIQIGDQIIAVDGTNLQGFTNQQAVEVLR 79
>pdb|2IWO|A Chain A, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz
(Casp Target)
pdb|2IWO|B Chain B, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz
(Casp Target)
pdb|2IWP|A Chain A, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz
(Casp Target)
pdb|2IWP|B Chain B, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz
(Casp Target)
Length = 120
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 27/45 (60%)
Query: 45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
I + ++P G AA+ +L+ GD+I+ + G +TH +A+ L+
Sbjct: 55 IFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLK 99
>pdb|1QLC|A Chain A, Solution Structure Of The Second Pdz Domain Of
Postsynaptic Density-95
Length = 95
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT 91
I V I GAA KD RL+ GD+IL + ++ H A+A L+ T
Sbjct: 35 IYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNT 81
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
+ + GG A DGRL GD+I++V+ + D E+ +K
Sbjct: 39 KIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALK 79
>pdb|2FN5|A Chain A, Nmr Structure Of The Neurabin Pdz Domain (502-594)
Length = 94
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 38 ATIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
A + K GI V + GAA +D R++ DQI+E+ G +T A LR T +
Sbjct: 30 AGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVR 88
Score = 30.4 bits (67), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 6 GGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
GG A DGR+ DQI+ VDG + +Q AT+++
Sbjct: 45 GGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLR 81
>pdb|1UM7|A Chain A, Solution Structure Of The Third Pdz Domain Of Synapse-
Associated Protein 102
Length = 113
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 25/46 (54%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
GI V I G A L+ GD+IL + G + RN TH +A A L+
Sbjct: 40 GIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALK 85
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 26/39 (66%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
+ GG A G L +GD+I+SV+G ++R+ + E+ A +K
Sbjct: 47 LAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALK 85
>pdb|3JXT|A Chain A, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
pdb|3JXT|B Chain B, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
Length = 104
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 26/39 (66%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
+ GG A G L +GD+I+SV+G ++R+ + E+ A +K
Sbjct: 44 LAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALK 82
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 25/46 (54%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
GI V I G A L+ GD+IL + G + RN TH +A A L+
Sbjct: 37 GIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALK 82
>pdb|1NF3|C Chain C, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|D Chain D, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 128
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIM 41
R VPGG+A + G L D+++ V+G +V KS ++V +M
Sbjct: 71 RLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMM 110
>pdb|1UHP|A Chain A, Solution Structure Of Rsgi Ruh-005, A Pdz Domain In
Human Cdna, Kiaa1095
Length = 107
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAM 85
GI V I G AAK+ L+ D+I+E+ G D TH +A+
Sbjct: 42 GIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAV 83
>pdb|2F0A|A Chain A, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
pdb|2F0A|B Chain B, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
pdb|2F0A|C Chain C, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
pdb|2F0A|D Chain D, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
Length = 98
Score = 35.4 bits (80), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTV 101
GGI + I GA A D R++ GD +L++ +F N ++ A+ LR KP P V
Sbjct: 29 GGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRVLR--DIVHKPGPIV 85
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 6 GGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
GG A DGR+ GD ++ V+ + + S ++ +++
Sbjct: 39 GGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRVLR 75
>pdb|2DJT|A Chain A, Solution Structures Of The Pdz Domain Of Human Unnamed
Protein Product
Length = 104
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
+ V + +G A + RL+ GD +L + GE + +THA+A+ +R
Sbjct: 40 LAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIR 84
>pdb|1UM1|A Chain A, Solution Structure Of Rsgi Ruh-007, Pdz Domain In Human
Cdna
Length = 110
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
G+ + + P AA D RL GD+ILE+ G + + +A+ +R
Sbjct: 37 GLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIR 82
Score = 29.6 bits (65), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDV 29
+PG AA DGRL GD+I+ V+G+ +
Sbjct: 44 LPGSPAAADGRLSLGDRILEVNGSSL 69
>pdb|3FY5|A Chain A, Dishevelled Pdz Domain Homodimer
pdb|3FY5|B Chain B, Dishevelled Pdz Domain Homodimer
Length = 91
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTV 101
GGI + I GA A D R++ GD +L++ +F N ++ A+ LR KP P V
Sbjct: 27 GGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRVLR--DIVHKPGPIV 83
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 6 GGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
GG A DGR+ GD ++ V+ + + S ++ +++
Sbjct: 37 GGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRVLR 73
>pdb|2O2T|A Chain A, The Crystal Structure Of The 1st Pdz Domain Of Mpdz
pdb|2O2T|B Chain B, The Crystal Structure Of The 1st Pdz Domain Of Mpdz
Length = 117
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDF-RNITHAKAMAHLR 89
GI V +I A +D RLK DQIL + G+ + ITH +A++ L+
Sbjct: 50 GIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQ 96
Score = 26.2 bits (56), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 6 GGIAATDGRLLKGDQIMSVDG 26
G +A DGRL + DQI++++G
Sbjct: 59 GSVAHRDGRLKETDQILAING 79
>pdb|2R4H|B Chain B, Crystal Structure Of A C1190s Mutant Of The 6th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|A Chain A, Crystal Structure Of A C1190s Mutant Of The 6th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|C Chain C, Crystal Structure Of A C1190s Mutant Of The 6th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
Length = 112
Score = 35.0 bits (79), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 27/41 (65%)
Query: 45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAM 85
+ V + +G A + +++ GD+ILE+ GE +N+ H++A+
Sbjct: 51 LYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAI 91
>pdb|3HVQ|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
pdb|3HVQ|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
Length = 170
Score = 35.0 bits (79), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 38 ATIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
A + K GI V + GAA +D R++ DQI+E+ G +T A LR T +
Sbjct: 106 AGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVR 164
Score = 30.8 bits (68), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 6 GGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
GG A DGR+ DQI+ VDG + +Q AT+++
Sbjct: 121 GGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLR 157
>pdb|1L6O|A Chain A, Xenopus Dishevelled Pdz Domain
pdb|1L6O|B Chain B, Xenopus Dishevelled Pdz Domain
pdb|1L6O|C Chain C, Xenopus Dishevelled Pdz Domain
Length = 95
Score = 34.3 bits (77), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTV 101
GGI + I GA A D R++ GD +L++ +F N ++ A+ LR KP P V
Sbjct: 29 GGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRVLR--DIVHKPGPIV 85
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 6 GGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
GG A DGR+ GD ++ V+ + + S ++ +++
Sbjct: 39 GGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRVLR 75
>pdb|2AWX|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
pdb|2AWX|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
Length = 105
Score = 34.3 bits (77), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT 91
I V I GAA KD +L+ GD++L + +TH +A+ L+ T
Sbjct: 35 IYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNT 81
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
+ + GG A DG+L GD++++V+ + + + EE T +K
Sbjct: 39 KIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALK 79
>pdb|2AWW|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
pdb|2AWW|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
Length = 105
Score = 34.3 bits (77), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT 91
I V I GAA KD +L+ GD++L + +TH +A+ L+ T
Sbjct: 35 IYVTSIVEGGAAHKDGKLQIGDKLLAVNSVGLEEVTHEEAVTALKNT 81
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
V GG A DG+L GD++++V+ + + + EE T +K
Sbjct: 41 VEGGAAHKDGKLQIGDKLLAVNSVGLEEVTHEEAVTALK 79
>pdb|2X7Z|A Chain A, Crystal Structure Of The Sap97 Pdz2 I342w C378a Mutant
Protein Domain
Length = 99
Score = 33.9 bits (76), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT 91
I V I GAA KD +L+ GD++L + +TH +A+ L+ T
Sbjct: 40 IYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNT 86
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
+ + GG A DG+L GD++++V+ + + + EE T +K
Sbjct: 44 KIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALK 84
>pdb|1UIT|A Chain A, Solution Structure Of Rsgi Ruh-006, The Third Pdz Domain
Of Hdlg5 (Kiaa0583) Protein [homo Sapiens]
Length = 117
Score = 33.9 bits (76), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKA 84
KGGI V + G+ A A L++GDQ+LE G + R+ T +A
Sbjct: 41 KGGIYVSKV-TVGSIAHQAGLEYGDQLLEFNGINLRSATEQQA 82
>pdb|2AWU|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
pdb|2AWU|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
Length = 105
Score = 33.9 bits (76), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT 91
I V I GAA KD +L+ GD++L + +TH +A+ L+ T
Sbjct: 35 IYVTKIIEGGAAHKDGKLQIGDKLLAVNSVGLEEVTHEEAVTALKNT 81
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
+ + GG A DG+L GD++++V+ + + + EE T +K
Sbjct: 39 KIIEGGAAHKDGKLQIGDKLLAVNSVGLEEVTHEEAVTALK 79
>pdb|4G69|A Chain A, Structure Of The Human Discs Large 1 Pdz2 - Adenomatous
Polyposis Coli Cytoskeletal Polarity Complex
Length = 100
Score = 33.9 bits (76), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT 91
I V I GAA KD +L+ GD++L + +TH +A+ L+ T
Sbjct: 41 IYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEAVTALKNT 87
Score = 30.8 bits (68), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
+ + GG A DG+L GD++++V+ + + + EE T +K
Sbjct: 45 KIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEAVTALK 85
>pdb|3PDV|A Chain A, Structure Of The Pdlim2 Pdz Domain In Complex With The
C-Terminal 6- Peptide Extension Of Ns1
Length = 89
Score = 33.9 bits (76), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 53 EGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPA 93
E AKDA L+ GD I+ + GE + HA+A + +R +P+
Sbjct: 34 ERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQSPS 74
>pdb|1RZX|A Chain A, Crystal Structure Of A Par-6 Pdz-Peptide Complex
Length = 98
Score = 33.5 bits (75), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIM 41
R VPGG+A + G L D+++ V+G +V K+ ++V +M
Sbjct: 44 RLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMM 83
>pdb|1WI4|A Chain A, Solution Structure Of The Pdz Domain Of Syntaxin Binding
Protein 4
Length = 109
Score = 33.5 bits (75), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMA 86
+ +H++ P G KD RLK GDQ++ + E ++ +A +
Sbjct: 43 VYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKS 84
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIM 41
+PGG DGRL GDQ++S++ + S EE +I+
Sbjct: 49 IPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSII 86
>pdb|2OQS|A Chain A, Structure Of The HdlgSAP97 PDZ2 IN COMPLEX WITH HPV-18
Papillomavirus E6 Peptide
Length = 97
Score = 33.5 bits (75), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT 91
I V I GAA KD +L+ GD++L + +TH +A+ L+ T
Sbjct: 31 IYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEAVTALKNT 77
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
+ + GG A DG+L GD++++V+ + + + EE T +K
Sbjct: 35 KIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEAVTALK 75
>pdb|1WI2|A Chain A, Solution Structure Of The Pdz Domain From Riken Cdna
2700099c19
Length = 104
Score = 33.5 bits (75), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
GI + + P+ A + A L+ GDQ+L + DF++I H+KA+ L+
Sbjct: 42 GIFISKVIPDSDAHR-AGLQEGDQVLAVNDVDFQDIEHSKAVEILK 86
>pdb|2JRE|A Chain A, C60-1, A Pdz Domain Designed Using Statistical Coupling
Analysis
Length = 108
Score = 33.5 bits (75), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 25/39 (64%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
+PG AA DGR+ D+I+ VD +V+ +Q +V +++
Sbjct: 52 IPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLR 90
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 22 MSVDGTDVRDKSQEEVATIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITH 81
+S+ G +RD+S AT GI V + P AAA D R++ D+IL + + + +
Sbjct: 29 ISISG--MRDQSTTGEAT----GIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQ 82
Query: 82 AKAMAHLR 89
+ + LR
Sbjct: 83 SDVVEVLR 90
>pdb|2VWR|A Chain A, Crystal Structure Of The Second Pdz Domain Of
Numb-Binding Protein 2
Length = 95
Score = 33.5 bits (75), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 26/37 (70%)
Query: 6 GGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
GG+AA DGRL D++++++G D++ + E A I++
Sbjct: 39 GGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQ 75
Score = 30.4 bits (67), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFR 77
G+ + D+ G AA+D RL D++L + G D +
Sbjct: 30 GVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLK 63
Score = 30.4 bits (67), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 139 LEFVDVELTKK-AGKGFGLSLVGRKQGPGVFISDLV 173
+E + V L K+ +G+ G+ LV R PGVFI DL+
Sbjct: 2 MEILQVALHKRDSGEQLGIKLVRRTDEPGVFILDLL 37
>pdb|2PA1|A Chain A, Structure Of The Pdz Domain Of Human Pdlim2 Bound To A
C-Terminal Extension From Human Beta-Tropomyosin
Length = 87
Score = 33.5 bits (75), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 53 EGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPA 93
E AKDA L+ GD I+ + GE + HA+A + +R +P+
Sbjct: 35 ERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQSPS 75
>pdb|3RL8|A Chain A, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|B Chain B, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|C Chain C, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|D Chain D, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|E Chain E, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
Length = 105
Score = 33.5 bits (75), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT 91
I V I GAA KD +L+ GD++L + +TH +A+ L+ T
Sbjct: 43 IYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEAVTALKNT 89
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
+ + GG A DG+L GD++++V+ + + + EE T +K
Sbjct: 47 KIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEAVTALK 87
>pdb|1X8S|A Chain A, Structure Of The Par-6 Pdz Domain With A Pals1 Internal
Ligand
pdb|2LC7|A Chain A, Solution Structure Of The Isolated Par-6 Pdz Domain
Length = 102
Score = 33.5 bits (75), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIM 41
R VPGG+A + G L D+++ V+G +V K+ ++V +M
Sbjct: 46 RLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMM 85
>pdb|2LC6|A Chain A, Solution Structure Of Par-6 Q144cL164C
Length = 128
Score = 33.5 bits (75), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIM 41
R VPGG+A + G L D+++ V+G +V K+ ++V +M
Sbjct: 72 RLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMM 111
>pdb|2G2L|A Chain A, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
pdb|2G2L|B Chain B, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
Length = 105
Score = 33.5 bits (75), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT 91
I V I GAA KD +L+ GD++L + +TH +A+ L+ T
Sbjct: 35 IYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCLEEVTHEEAVTALKNT 81
Score = 30.8 bits (68), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
+ + GG A DG+L GD++++V+ + + + EE T +K
Sbjct: 39 KIIEGGAAHKDGKLQIGDKLLAVNSVCLEEVTHEEAVTALK 79
>pdb|1RY4|A Chain A, Nmr Structure Of The Crib-Pdz Module Of Par-6
Length = 128
Score = 33.5 bits (75), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIM 41
R VPGG+A + G L D+++ V+G +V K+ ++V +M
Sbjct: 72 RLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMM 111
>pdb|2I0L|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6.
pdb|2I0L|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 84
Score = 33.1 bits (74), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT 91
I V I GAA KD +L+ GD++L + +TH +A+ L+ T
Sbjct: 30 IYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCLEEVTHEEAVTALKNT 76
Score = 31.2 bits (69), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
+ + GG A DG+L GD++++V+ + + + EE T +K
Sbjct: 34 KIIEGGAAHKDGKLQIGDKLLAVNSVCLEEVTHEEAVTALK 74
>pdb|2G5M|B Chain B, Spinophilin Pdz Domain
Length = 113
Score = 33.1 bits (74), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
GI V + GAA +D R++ D ++E+ G +T + A + LR T + +
Sbjct: 36 GIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVR 88
Score = 26.6 bits (57), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 6 GGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
GG A DGR+ D ++ VDGT + +Q A++++
Sbjct: 45 GGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLR 81
>pdb|1UJD|A Chain A, Solution Structure Of Rsgi Ruh-003, A Pdz Domain Of
Hypothetical Kiaa0559 Protein From Human Cdna
Length = 117
Score = 33.1 bits (74), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIM 41
+ +PGG A G+L++G Q++ +G + K+ EEV +I+
Sbjct: 55 KILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSII 94
>pdb|4AMH|A Chain A, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
pdb|4AMH|B Chain B, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
Length = 106
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT 91
I V I GAA KD +L+ GD++L + +TH +A+ L+ T
Sbjct: 34 IYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNT 80
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
+ + GG A DG+L GD++++V+ + + + EE T +K
Sbjct: 38 KIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALK 78
>pdb|3EGH|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
pdb|3EGH|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
Length = 170
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
K GI V + GAA +D R++ D ++E+ G +T + A + LR T + +
Sbjct: 110 KLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVR 164
Score = 26.9 bits (58), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 6 GGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
GG A DGR+ D ++ VDGT + +Q A++++
Sbjct: 121 GGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLR 157
>pdb|1QAV|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 90
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT 91
IL+ I+ AA + L GD IL + GED + TH +A+ L+ T
Sbjct: 32 ILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKT 78
>pdb|3EGG|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
pdb|3EGG|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
Length = 170
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
K GI V + GAA +D R++ D ++E+ G +T + A + LR T + +
Sbjct: 110 KLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVR 164
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 6 GGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
GG A DGR+ D ++ VDGT + +Q A++++
Sbjct: 121 GGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLR 157
>pdb|2PDZ|A Chain A, Solution Structure Of The Syntrophin Pdz Domain In
Complex With The Peptide Gvkeslv, Nmr, 15 Structures
Length = 86
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT 91
IL+ I+ AA + L GD IL + GED + TH +A+ L+ T
Sbjct: 28 ILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKT 74
>pdb|1Z86|A Chain A, Solution Structure Of The Pdz Domain Of Alpha-Syntrophin
Length = 87
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT 91
IL+ I+ AA + L GD IL + GED + TH +A+ L+ T
Sbjct: 28 ILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKT 74
>pdb|1Z87|A Chain A, Solution Structure Of The Split Ph-Pdz Supramodule Of
Alpha- Syntrophin
Length = 263
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 41 MKGG------ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT 91
+KGG IL+ I+ AA + L GD IL + GED + TH +A+ L+ T
Sbjct: 95 IKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKT 151
>pdb|1UEZ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Kiaa1526 Protein
Length = 101
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 30 RDKSQEEVATIMKGG------ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAK 83
R K+ E + ++GG I V + P G+ A+ L+ GDQIL + + +THA+
Sbjct: 16 RAKAHEGLGFSIRGGSEHGVGIYVSLVEP-GSLAEKEGLRVGDQILRVNDKSLARVTHAE 74
Query: 84 AMAHLR 89
A+ L+
Sbjct: 75 AVKALK 80
>pdb|2QT5|A Chain A, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
pdb|2QT5|B Chain B, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
Length = 200
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 9/62 (14%)
Query: 28 DVRDKSQEEVATIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAH 87
D R+KS+ V T ++ P G A ++ +K GD++L + G THA+AM+
Sbjct: 129 DDRNKSRPVVITCVR---------PGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSI 179
Query: 88 LR 89
L+
Sbjct: 180 LK 181
Score = 29.6 bits (65), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 5 PGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
PGG A +G + GD+++SVDG + + E +I+K
Sbjct: 144 PGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILK 181
Score = 26.2 bits (56), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 6 GGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
GGIAA +L GD I +V+G ++ +E+ +++K
Sbjct: 43 GGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLK 79
>pdb|2EJY|A Chain A, Solution Structure Of The P55 Pdz T85c Domain Complexed
With The Glycophorin C F127c Peptide
Length = 97
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
R + GG+ G L GD+I+ ++GT+V + S +++ MK
Sbjct: 42 RILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMK 82
>pdb|2KG2|A Chain A, Solution Structure Of A Pdz Protein
Length = 124
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHL 88
GI V + EG A+ A L+ GD+I+++ G D +TH +A L
Sbjct: 54 GIYVTRV-SEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRL 97
>pdb|2EV8|A Chain A, Solution Structure Of The Erythroid P55 Pdz Domain
Length = 97
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
R + GG+ G L GD+I+ ++GT+V + S +++ MK
Sbjct: 42 RILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMK 82
>pdb|3DJ3|A Chain A, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|B Chain B, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|C Chain C, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|D Chain D, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
Length = 113
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 53 EGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHL 88
EG A+ A L+ GD+I+++ G D +TH +A L
Sbjct: 63 EGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRL 98
>pdb|3DIW|A Chain A, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DIW|B Chain B, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DJ1|A Chain A, Crystal Structure Of Tip-1 Wild Type
pdb|3DJ1|B Chain B, Crystal Structure Of Tip-1 Wild Type
Length = 124
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHL 88
GI V + EG A+ A L+ GD+I+++ G D +TH +A L
Sbjct: 54 GIYVTRV-SEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRL 97
>pdb|3GJ9|A Chain A, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|3GJ9|B Chain B, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|2L4S|A Chain A, Promiscuous Binding At The Crossroads Of Numerous Cancer
Pathways: Insight From The Binding Of Gip With
Glutaminase L
pdb|2L4T|A Chain A, GipGLUTAMINASE L PEPTIDE COMPLEX
Length = 124
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHL 88
GI V + EG A+ A L+ GD+I+++ G D +TH +A L
Sbjct: 54 GIYVTRV-SEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRL 97
>pdb|2VZ5|A Chain A, Structure Of The Pdz Domain Of Tax1 (Human T-Cell Leukemia
Virus Type I) Binding Protein 3
Length = 139
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHL 88
GI V + EG A+ A L+ GD+I+++ G D +TH +A L
Sbjct: 65 GIYVTRV-SEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRL 108
>pdb|2GZV|A Chain A, The Cystal Structure Of The Pdz Domain Of Human Pick1
(Casp Target)
Length = 114
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 9 AATDGRLLKGDQIMSVDGTDVRDKSQEEVATIM---KGGILVH 48
AA DG + GD+I V+G ++ K++ EVA ++ KG + +H
Sbjct: 63 AALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 105
>pdb|2JIL|A Chain A, Crystal Structure Of 2nd Pdz Domain Of Glutamate
Receptor Interacting Protein-1 (Grip1)
pdb|2JIL|B Chain B, Crystal Structure Of 2nd Pdz Domain Of Glutamate
Receptor Interacting Protein-1 (Grip1)
Length = 97
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 27/45 (60%)
Query: 45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
+++ + P G A ++ +K GD++L + G THA+AM+ L+
Sbjct: 34 VVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILK 78
Score = 29.6 bits (65), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 5 PGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
PGG A +G + GD+++SVDG + + E +I+K
Sbjct: 41 PGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILK 78
>pdb|2PKU|A Chain A, Solution Structure Of Pick1 Pdz In Complex With The
Carboxyl Tail Peptide Of Glur2
Length = 87
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 9 AATDGRLLKGDQIMSVDGTDVRDKSQEEVATIM---KGGILVH 48
AA DG + GD+I V+G ++ K++ EVA ++ KG + +H
Sbjct: 41 AALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 83
>pdb|1U3B|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 185
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 6 GGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
GG A G+L GDQIMS++GT + +I+KG
Sbjct: 39 GGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKG 76
>pdb|3HPM|A Chain A, Oxidized Dimeric Pick1 Pdz C46g Mutant In Complex With
The C Tail Peptide Of Glur2
pdb|3HPM|B Chain B, Oxidized Dimeric Pick1 Pdz C46g Mutant In Complex With
The C Tail Peptide Of Glur2
Length = 111
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 9 AATDGRLLKGDQIMSVDGTDVRDKSQEEVATIM---KGGILVH 48
AA DG + GD+I V+G ++ K++ EVA ++ KG + +H
Sbjct: 44 AALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 86
>pdb|3SFJ|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1)
Pdz Domain Bound To Ical36 Inhibitor Peptide
pdb|3SFJ|C Chain C, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1)
Pdz Domain Bound To Ical36 Inhibitor Peptide
Length = 104
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHL 88
GI V + EG A+ A L+ GD+I+++ G D +TH +A L
Sbjct: 46 GIYVTRV-SEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRL 89
>pdb|3SUZ|A Chain A, Crystal Structure Of Rat Mint2 Ppc
Length = 287
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 6 GGIAATDGRLLKGDQIMSVDGTDV 29
GG AA G+L GDQIMS++GT +
Sbjct: 226 GGPAARSGKLSIGDQIMSINGTSL 249
>pdb|3SHU|A Chain A, Crystal Structure Of Zo-1 Pdz3
pdb|3SHU|B Chain B, Crystal Structure Of Zo-1 Pdz3
Length = 95
Score = 31.2 bits (69), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTP 92
GI V + + AAK+ L+ GDQIL + DF NI +A+ L P
Sbjct: 27 GIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLP 74
>pdb|1VA8|A Chain A, Solution Structure Of The Pdz Domain Of Pals1 Protein
Length = 113
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
R V GG A G L +GD+++ ++G ++R K EV ++
Sbjct: 54 RIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLS 94
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFR 77
+++ I GAA K L GD++LE+ G + R
Sbjct: 50 VIISRIVKGGAAEKSGLLHEGDEVLEINGIEIR 82
>pdb|4E3B|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1)
Pdz Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E3B|B Chain B, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1)
Pdz Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 102
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHL 88
GI V + EG A+ A L+ GD+I+++ G D +TH +A L
Sbjct: 44 GIYVTRV-SEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRL 87
>pdb|3HPK|A Chain A, Oxidized Dimeric Pick1 Pdz In Complex With The Carboxyl
Tail Of Glur2
pdb|3HPK|B Chain B, Oxidized Dimeric Pick1 Pdz In Complex With The Carboxyl
Tail Of Glur2
Length = 125
Score = 31.2 bits (69), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 9 AATDGRLLKGDQIMSVDGTDVRDKSQEEVATIM---KGGILVH 48
AA DG + GD+I V+G ++ K++ EVA ++ KG + +H
Sbjct: 58 AALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 100
>pdb|3TSV|A Chain A, Crystal Structure Of The Third Pdz Domain Of The Human
Zo-1 Maguk Protein
Length = 124
Score = 30.8 bits (68), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTP 92
GI V + + AAK+ L+ GDQIL + DF NI +A+ L P
Sbjct: 52 GIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLP 99
>pdb|1X5Q|A Chain A, Solution Structure Of The First Pdz Domain Of Scribble
Homolog Protein (Hscrib)
Length = 110
Score = 30.8 bits (68), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
GI + + EG AA+ A ++ GD++LE+ G + H +A+ LR
Sbjct: 47 GIFISRVSEEGPAAR-AGVRVGDKLLEVNGVALQGAEHHEAVEALR 91
>pdb|3TSW|B Chain B, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of
Human Zo-1
Length = 194
Score = 30.8 bits (68), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHL 88
GI V + + AAK+ L+ GDQIL + DF NI +A+ L
Sbjct: 25 GIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFL 68
>pdb|1U38|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
pdb|1U37|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 89
Score = 30.8 bits (68), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 6 GGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
GG A G+L GDQIMS++GT + +I+KG
Sbjct: 39 GGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKG 76
>pdb|1UEW|A Chain A, Solution Structure Of The Forth Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 114
Score = 30.8 bits (68), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 9/58 (15%)
Query: 56 AAKDARLKFGDQILELTGEDFRNITHAKAM---------AHLRLTPAKAKPCPTVPSE 104
A + A+LK GD+IL + G+ N+ HA + LR+ P + P+ PS
Sbjct: 56 ADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQEELNSPSGPSS 113
>pdb|2W4F|A Chain A, Crystal Structure Of The First Pdz Domain Of Human
Scrib1
Length = 97
Score = 30.4 bits (67), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
GI + + EG AA+ A ++ GD++LE+ G + H +A+ LR
Sbjct: 35 GIFISRVSEEGPAAR-AGVRVGDKLLEVNGVALQGAEHHEAVEALR 79
>pdb|2LOB|A Chain A, Pdz Domain Of Cal (Cystic Fibrosis Transmembrane
Regulator-Associated Ligand)
Length = 112
Score = 30.4 bits (67), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 5 PGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIM 41
PG A G L GD I++V+G ++RD +E TI+
Sbjct: 62 PGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTIL 98
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAM 85
IL+ +I+P A + L GD IL + G + R+ H +A+
Sbjct: 55 ILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAV 95
>pdb|4E34|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E34|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E35|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E35|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 87
Score = 30.4 bits (67), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 5 PGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIM 41
PG A G L GD I++V+G ++RD +E TI+
Sbjct: 37 PGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTIL 73
Score = 30.0 bits (66), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAM 85
IL+ +I+P A + L GD IL + G + R+ H +A+
Sbjct: 30 ILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAV 70
>pdb|1X45|A Chain A, Solution Structure Of The First Pdz Domain Of Amyloid
Beta A4 Precursor Protein-Binding Family A, Member 1
Length = 98
Score = 30.4 bits (67), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 6 GGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
GG A G+L GDQIMS++GT + +I+KG
Sbjct: 43 GGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKG 80
>pdb|2DC2|A Chain A, Solution Structure Of Pdz Domain
Length = 103
Score = 30.4 bits (67), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 5 PGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIM 41
PG A G L GD I++V+G ++RD +E TI+
Sbjct: 44 PGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTIL 80
Score = 29.6 bits (65), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAM 85
IL+ +I+P A + L GD IL + G + R+ H +A+
Sbjct: 37 ILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAV 77
>pdb|3SHW|A Chain A, Crystal Structure Of Zo-1 Pdz3-Sh3-Guk Supramodule
Complex With Connexin-45 Peptide
Length = 468
Score = 30.4 bits (67), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHL 88
GI V + + AAK+ L+ GDQIL + DF NI +A+ L
Sbjct: 24 GIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFL 67
>pdb|3TSW|A Chain A, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of
Human Zo-1
pdb|3TSW|C Chain C, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of
Human Zo-1
pdb|3TSW|D Chain D, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of
Human Zo-1
pdb|3TSZ|A Chain A, Crystal Structure Of Pdz3-Sh3-Guk Core Module From Human
Zo-1 In Complex With 12mer Peptide From Human Jam-A
Cytoplasmic Tail
Length = 391
Score = 30.4 bits (67), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHL 88
GI V + + AAK+ L+ GDQIL + DF NI +A+ L
Sbjct: 32 GIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFL 75
>pdb|2DLS|A Chain A, Solution Structure Of The Pdz Domain Of Human Rho
Guanine Nucleotide Exchange Factor 11
Length = 93
Score = 30.0 bits (66), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 5 PGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGGILV 47
PGG A G + +GD+I+ V+GT V + S EV ++K G V
Sbjct: 38 PGGAAMKAG-VKEGDRIIKVNGTMVTNSSHLEVVKLIKSGAYV 79
>pdb|1UEQ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 123
Score = 30.0 bits (66), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Query: 47 VHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTP---------AKAKP 97
V + P+G AA+D +++ GD I+ + THA + + P + P
Sbjct: 48 VKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRGYP 107
Query: 98 CPTVPSEP-NANATTG 112
P P +P N+ ++G
Sbjct: 108 LPFDPEDPANSGPSSG 123
>pdb|1WHA|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 105
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHL 88
GI V I GAA + L+ GD++L + G D H A++ L
Sbjct: 39 GIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLL 83
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIM 41
R GG A G L GD+++S++G DV + + +++
Sbjct: 44 RIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLL 83
>pdb|2DMZ|A Chain A, Solution Structure Of The Third Pdz Domain Of Human
Inad- Like Protein
Length = 129
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK-GGILVH 48
+PG A +G + D+I++VDG +++ + +V +++ G +VH
Sbjct: 54 IPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRNAGQVVH 99
>pdb|4G6Z|A Chain A, Crystal Structure Of A Glutamyl-Trna Synthetase Glurs From
Burkholderia Thailandensis Bound To L-Glutamate
Length = 490
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 13 GRLLKGDQIMSVDGTDVRDKSQEEVATIMKGGILVHDIYPEGAAAKDARLKFGDQIL 69
R +KG ++ ++ TDV SQE V I++G + Y EG + R+ ++L
Sbjct: 53 ARKMKGTFVLRIEDTDVERSSQEAVDAILEGMAWLGLDYDEGPYYQMQRMDRYREVL 109
>pdb|1UEP|A Chain A, Solution Structure Of The Third Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 103
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 7 GIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIM 41
G A DGRL GD+++ VDG V K+ V +M
Sbjct: 45 GSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLM 79
>pdb|1X5R|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Glutamate
Receptor Interacting Protein 2
Length = 112
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 5 PGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGGILVHDIYPE 53
P A G L GD+++S++G D + EE +++ L H + E
Sbjct: 54 PDSPAERCGLLQVGDRVLSINGIATEDGTMEEANQLLRDAALAHKVVLE 102
>pdb|3QE1|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The C-Terminal Residues (Eseskv) Of
Girk3
Length = 107
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
+PGG A G + KGD+I+ V+G +V + ++V +++ G
Sbjct: 51 LPGGAADRAG-VRKGDRILEVNGVNVEGATHKQVVDLIRAG 90
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 54 GAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
G AA A ++ GD+ILE+ G + TH + + +R
Sbjct: 53 GGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIR 88
>pdb|1I92|A Chain A, Structural Basis Of The Nherf Pdz1-Cftr Interaction
Length = 91
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 54 GAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
G+ A+ A L GD+++E+ GE+ TH + ++ +R
Sbjct: 37 GSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIR 72
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 26/45 (57%)
Query: 1 MRAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGGI 45
+R V G A LL GD+++ V+G +V ++ ++V + ++ +
Sbjct: 31 IRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAAL 75
>pdb|3QGL|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide
Corresponding To The C-Terminal Tail Of Girk3
pdb|3QGL|B Chain B, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide
Corresponding To The C-Terminal Tail Of Girk3
pdb|3QGL|C Chain C, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide
Corresponding To The C-Terminal Tail Of Girk3
pdb|3QGL|D Chain D, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide
Corresponding To The C-Terminal Tail Of Girk3
pdb|3QGL|E Chain E, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide
Corresponding To The C-Terminal Tail Of Girk3
Length = 101
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
+PGG A G + KGD+I+ V+G +V + ++V +++ G
Sbjct: 51 LPGGAADRAG-VRKGDRILEVNGVNVEGATHKQVVDLIRAG 90
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 54 GAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
G AA A ++ GD+ILE+ G + TH + + +R
Sbjct: 53 GGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIR 88
>pdb|3FOL|A Chain A, Crystal Structure Of The Class I Mhc Molecule H-2kwm7 With
A Single Self Peptide Vndiferi
pdb|3FOM|A Chain A, Crystal Structure Of The Class I Mhc Molecule H-2kwm7 With
A Single Self Peptide Iqqsierl
pdb|3FON|A Chain A, Crystal Structure Of The Class I Mhc Molecule H-2kwm7 With
A Single Self Peptide Vndifeai
pdb|3FON|C Chain C, Crystal Structure Of The Class I Mhc Molecule H-2kwm7 With
A Single Self Peptide Vndifeai
Length = 274
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 6 GGIAATDGRLLKGDQIMSVDGTD---VRDKSQEEVATIMKGGILVHDIYPEGAAAKD 59
G +DGRLL+G Q ++ DG D + + + A M I H GAA +D
Sbjct: 100 GCEVGSDGRLLRGYQQVAYDGRDYIALNEDLKTWTAADMAALITKHKWEQAGAAERD 156
>pdb|1GQ4|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2ar And Pdgfr
Length = 90
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 54 GAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
G+ A+ A L GD+++E+ GE+ TH + ++ +R
Sbjct: 36 GSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIR 71
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 26/45 (57%)
Query: 1 MRAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGGI 45
+R V G A LL GD+++ V+G +V ++ ++V + ++ +
Sbjct: 30 IRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAAL 74
>pdb|1G9O|A Chain A, First Pdz Domain Of The Human Na+H+ EXCHANGER REGULATORY
Factor
Length = 91
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 54 GAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
G+ A+ A L GD+++E+ GE+ TH + ++ +R
Sbjct: 37 GSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIR 72
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 26/45 (57%)
Query: 1 MRAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGGI 45
+R V G A LL GD+++ V+G +V ++ ++V + ++ +
Sbjct: 31 IRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAAL 75
>pdb|1GQ5|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2- Ar And Pdgfr
Length = 91
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 54 GAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
G+ A+ A L GD+++E+ GE+ TH + ++ +R
Sbjct: 37 GSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIR 72
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 26/45 (57%)
Query: 1 MRAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGGI 45
+R V G A LL GD+++ V+G +V ++ ++V + ++ +
Sbjct: 31 IRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAAL 75
>pdb|3QDO|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The Gly-Gly Linker Followed By
C-Terminal (Eseskv) Of Girk3
Length = 109
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
+PGG A G + KGD+I+ V+G +V + ++V +++ G
Sbjct: 51 LPGGAADRAG-VRKGDRILEVNGVNVEGATHKQVVDLIRAG 90
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 54 GAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
G AA A ++ GD+ILE+ G + TH + + +R
Sbjct: 53 GGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIR 88
>pdb|2Q3G|A Chain A, Structure Of The Pdz Domain Of Human Pdlim7 Bound To A
C- Terminal Extension From Human Beta-Tropomyosin
pdb|2Q3G|B Chain B, Structure Of The Pdz Domain Of Human Pdlim7 Bound To A
C- Terminal Extension From Human Beta-Tropomyosin
Length = 89
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 47 VHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
+ + P G AA+ A + GD +L + GE+ ++TH +A +R
Sbjct: 31 ISRLTPGGKAAQ-AGVAVGDWVLSIDGENAGSLTHIEAQNKIR 72
>pdb|1V6B|A Chain A, Solution Structure Of The Third Pdz Domain Of Mouse
Harmonin
Length = 118
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
G ++V +Y GAA + + GD+I+ + G+ + T A+A A L+
Sbjct: 43 GKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQ 89
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 6 GGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
GG A G ++KGD+IM+++G V D + E ++
Sbjct: 53 GGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQ 89
>pdb|3O46|A Chain A, Crystal Structure Of The Pdz Domain Of Mpp7
Length = 93
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIM 41
R GG A G + GD++ V+G V DK EE+ I+
Sbjct: 34 RIXRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQIL 73
>pdb|2PKT|A Chain A, Crystal Structure Of The Human Clp-36 (Pdlim1) Bound To
The C-Terminal Peptide Of Human Alpha-Actinin-1
Length = 91
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 54 GAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
G+ A A L GD I + GE+ N+TH +A ++
Sbjct: 37 GSKAALANLCIGDVITAIDGENTSNMTHLEAQNRIK 72
>pdb|1KWA|A Chain A, Human CaskLIN-2 Pdz Domain
pdb|1KWA|B Chain B, Human CaskLIN-2 Pdz Domain
Length = 88
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 24/41 (58%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
R + GG+ G L GD+I ++G V +++ E++ +++
Sbjct: 31 RIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLR 71
>pdb|1PDR|A Chain A, Crystal Structure Of The Third Pdz Domain From The Human
Homolog Of Discs Large Protein
Length = 99
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVR 30
+ GG A G L KGD+I+SV+ D+R
Sbjct: 39 LAGGPADLSGELRKGDRIISVNSVDLR 65
>pdb|3NFK|A Chain A, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of A Rabies Virus G Protein
pdb|3NFK|B Chain B, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of A Rabies Virus G Protein
pdb|3NFL|A Chain A, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|B Chain B, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|C Chain C, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|D Chain D, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
Length = 107
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 14 RLLKGDQIMSVDGTDVRDKSQEEVATIMKGGILVH 48
RL +GDQ++ ++G D+ + + ++V +K H
Sbjct: 62 RLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERH 96
>pdb|2QKV|A Chain A, Crystal Structure Of The C645s Mutant Of The 5th Pdz
Domain Of Inad
pdb|2QKV|B Chain B, Crystal Structure Of The C645s Mutant Of The 5th Pdz
Domain Of Inad
Length = 96
Score = 26.9 bits (58), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 139 LEFVDVELTKKAGKGFGLSLVGRKQGPGVFISDLV 173
LE +V+L KKAGK GLSL + G I+DL+
Sbjct: 7 LEKFNVDLMKKAGKELGLSLSPNEI--GCTIADLI 39
>pdb|2CS5|A Chain A, Solution Structure Of Pdz Domain Of Protein Tyrosine
Phosphatase, Non-Receptor Type 4
Length = 119
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 14 RLLKGDQIMSVDGTDVRDKSQEEVATIMKGGILVH 48
RL +GDQ++ ++G D+ + + ++V +K H
Sbjct: 60 RLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERH 94
>pdb|2QKT|A Chain A, Crystal Structure Of The 5th Pdz Domain Of Inad
pdb|2QKT|B Chain B, Crystal Structure Of The 5th Pdz Domain Of Inad
Length = 90
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 139 LEFVDVELTKKAGKGFGLSLVGRKQGPGVFISDLV 173
LE +V+L KKAGK GLSL + G I+DL+
Sbjct: 1 LEKFNVDLMKKAGKELGLSLSPNEI--GCTIADLI 33
>pdb|2KPK|A Chain A, Magi-1 Pdz1
pdb|2KPL|A Chain A, Magi-1 Pdz1 E6CT
Length = 129
Score = 26.9 bits (58), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 7 GIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
G AA DG++ GD I+SV+ T V + +V I +
Sbjct: 54 GPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQ 89
>pdb|2QKU|A Chain A, The 5th Pdz Domain Of Inad In 10mm Dtt
pdb|2QKU|B Chain B, The 5th Pdz Domain Of Inad In 10mm Dtt
pdb|2QKU|C Chain C, The 5th Pdz Domain Of Inad In 10mm Dtt
Length = 90
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 139 LEFVDVELTKKAGKGFGLSLVGRKQGPGVFISDLV 173
LE +V+L KKAGK GLSL + G I+DL+
Sbjct: 1 LEKFNVDLXKKAGKELGLSLSPNEI--GCTIADLI 33
>pdb|2EEI|A Chain A, Solution Structure Of Second Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 106
Score = 26.9 bits (58), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 5 PGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
P G+A G +L D ++ V+G +V D S EEV +K
Sbjct: 41 PQGVAMRAG-VLADDHLIEVNGENVEDASHEEVVEKVK 77
>pdb|2VPH|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase, Non-Receptor Type 4, Pdz Domain
pdb|2VPH|B Chain B, Crystal Structure Of The Human Protein Tyrosine
Phosphatase, Non-Receptor Type 4, Pdz Domain
Length = 100
Score = 26.9 bits (58), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 14 RLLKGDQIMSVDGTDVRDKSQEEVATIMKGGILVH 48
RL +GDQ++ ++G D+ + + ++V +K H
Sbjct: 49 RLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERH 83
>pdb|2W7R|A Chain A, Structure Of The Pdz Domain Of Human Microtubule
Associated Serine-Threonine Kinase 4
pdb|2W7R|B Chain B, Structure Of The Pdz Domain Of Human Microtubule
Associated Serine-Threonine Kinase 4
Length = 98
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 53 EGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVPSE 104
EG+ A A LK GD I + GE + H + + L L T P E
Sbjct: 42 EGSPACQAGLKAGDLITHINGEPVHGLVHTEVIE-LLLKSGNKVSITTTPFE 92
>pdb|2I0I|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|C Chain C, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 85
Score = 26.6 bits (57), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVR 30
+ GG A G L KGD+I+SV+ D+R
Sbjct: 36 LAGGPADLSGELRKGDRIISVNSVDLR 62
>pdb|2LA8|A Chain A, Solution Structure Of Inad Pdz5 Complexed With Kon-Tiki
Peptide
Length = 106
Score = 26.6 bits (57), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 139 LEFVDVELTKKAGKGFGLSLVGRKQGPGVFISDLV 173
LE +V+L KKAGK GLSL + G I+DL+
Sbjct: 1 LEKFNVDLMKKAGKELGLSLSPNEI--GCTIADLI 33
>pdb|1FC6|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
Length = 388
Score = 26.6 bits (57), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 5 PGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
PGG A G GD I++VDGT V+ S +V+ +++G
Sbjct: 108 PGGPAEKAG-ARAGDVIVTVDGTAVKGXSLYDVSDLLQG 145
>pdb|2I04|A Chain A, X-Ray Crystal Structure Of Magi-1 Pdz1 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I04|B Chain B, X-Ray Crystal Structure Of Magi-1 Pdz1 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 85
Score = 26.2 bits (56), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 7 GIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
G AA DG++ GD I+SV+ T V + +V I +
Sbjct: 36 GPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQ 71
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,272,047
Number of Sequences: 62578
Number of extensions: 209190
Number of successful extensions: 963
Number of sequences better than 100.0: 196
Number of HSP's better than 100.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 608
Number of HSP's gapped (non-prelim): 374
length of query: 175
length of database: 14,973,337
effective HSP length: 92
effective length of query: 83
effective length of database: 9,216,161
effective search space: 764941363
effective search space used: 764941363
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)