Query psy1521
Match_columns 175
No_of_seqs 218 out of 1547
Neff 8.8
Searched_HMMs 46136
Date Fri Aug 16 23:30:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1521.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1521hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3209|consensus 99.9 2.8E-27 6.1E-32 199.4 12.1 173 2-175 680-933 (984)
2 KOG3209|consensus 99.8 1.1E-19 2.4E-24 153.8 9.7 93 2-94 784-974 (984)
3 PRK10779 zinc metallopeptidase 99.6 1.1E-14 2.4E-19 122.6 13.3 89 2-94 132-269 (449)
4 KOG3580|consensus 99.6 1.4E-15 3E-20 127.6 7.4 54 44-97 220-273 (1027)
5 TIGR00054 RIP metalloprotease 99.6 1.6E-14 3.6E-19 120.5 13.1 89 2-94 134-251 (420)
6 KOG3580|consensus 99.5 1.2E-13 2.5E-18 116.2 9.9 50 44-94 430-479 (1027)
7 PRK10139 serine endoprotease; 99.5 3.4E-13 7.3E-18 113.6 12.2 89 2-94 296-438 (455)
8 TIGR02037 degP_htrA_DO peripla 99.5 2.4E-13 5.3E-18 113.8 10.9 86 2-91 263-407 (428)
9 PRK10942 serine endoprotease; 99.5 6.2E-13 1.3E-17 112.5 11.2 89 2-94 317-456 (473)
10 PF00595 PDZ: PDZ domain (Also 99.4 1.6E-12 3.6E-17 84.4 5.7 51 43-94 25-75 (81)
11 KOG3605|consensus 99.3 9.8E-12 2.1E-16 105.3 7.4 90 3-94 680-806 (829)
12 KOG3550|consensus 99.1 1.2E-10 2.5E-15 82.7 6.3 54 44-97 116-169 (207)
13 cd00136 PDZ PDZ domain, also c 99.1 8.2E-10 1.8E-14 69.4 7.5 49 43-92 13-61 (70)
14 KOG3605|consensus 99.1 7.9E-11 1.7E-15 100.0 3.4 83 45-161 675-758 (829)
15 KOG3553|consensus 99.1 1.2E-10 2.6E-15 76.9 3.3 47 43-90 59-105 (124)
16 cd00988 PDZ_CTP_protease PDZ d 99.0 3.1E-09 6.6E-14 69.3 9.2 51 43-94 13-63 (85)
17 PF13180 PDZ_2: PDZ domain; PD 99.0 1.6E-09 3.4E-14 70.5 7.7 45 43-90 14-58 (82)
18 smart00228 PDZ Domain present 99.0 2.3E-09 5E-14 69.4 7.5 51 43-94 26-76 (85)
19 cd00992 PDZ_signaling PDZ doma 99.0 3.9E-09 8.4E-14 68.1 7.4 51 43-94 26-76 (82)
20 PF00595 PDZ: PDZ domain (Also 98.9 2.8E-09 6.1E-14 69.0 4.2 41 2-43 31-71 (81)
21 cd00991 PDZ_archaeal_metallopr 98.9 1.9E-08 4.1E-13 64.9 8.1 46 43-91 10-55 (79)
22 TIGR02037 degP_htrA_DO peripla 98.8 9E-08 2E-12 80.4 11.1 45 43-90 257-301 (428)
23 KOG3551|consensus 98.7 5.2E-09 1.1E-13 84.5 2.3 54 44-97 111-164 (506)
24 cd00986 PDZ_LON_protease PDZ d 98.7 1.7E-07 3.7E-12 60.3 9.0 44 43-90 8-51 (79)
25 cd00989 PDZ_metalloprotease PD 98.7 1E-07 2.2E-12 61.1 7.9 46 44-92 13-58 (79)
26 cd00987 PDZ_serine_protease PD 98.7 1.2E-07 2.6E-12 62.2 7.9 63 26-91 4-69 (90)
27 PLN00049 carboxyl-terminal pro 98.7 1.1E-07 2.4E-12 79.0 8.7 50 44-94 103-152 (389)
28 COG0793 Prc Periplasmic protea 98.6 1.3E-07 2.8E-12 78.8 8.5 50 44-94 113-162 (406)
29 cd00990 PDZ_glycyl_aminopeptid 98.6 1.3E-07 2.9E-12 60.8 6.8 35 43-78 12-46 (80)
30 KOG3549|consensus 98.6 5.2E-08 1.1E-12 77.9 5.7 53 44-96 81-133 (505)
31 KOG1892|consensus 98.6 4.7E-08 1E-12 86.5 5.8 53 44-96 961-1013(1629)
32 cd00136 PDZ PDZ domain, also c 98.6 6.7E-08 1.5E-12 60.5 5.1 41 2-43 19-59 (70)
33 TIGR00225 prc C-terminal pepti 98.6 2.8E-07 6E-12 75.0 9.0 50 44-94 63-112 (334)
34 PRK10139 serine endoprotease; 98.5 1.2E-06 2.6E-11 74.1 11.6 45 43-90 290-334 (455)
35 TIGR03279 cyano_FeS_chp putati 98.5 8E-07 1.7E-11 74.0 8.6 74 47-161 2-76 (433)
36 PRK10942 serine endoprotease; 98.5 2E-06 4.4E-11 73.1 11.0 46 43-91 311-356 (473)
37 PRK11186 carboxy-terminal prot 98.5 7.9E-07 1.7E-11 78.1 8.6 51 44-94 256-311 (667)
38 KOG3571|consensus 98.4 2.9E-07 6.4E-12 76.7 4.5 52 43-94 277-328 (626)
39 KOG3550|consensus 98.4 2.8E-07 6E-12 65.7 3.7 43 2-44 121-163 (207)
40 PRK10779 zinc metallopeptidase 98.4 1.3E-06 2.9E-11 73.8 8.5 42 45-89 128-169 (449)
41 cd00992 PDZ_signaling PDZ doma 98.4 8.4E-07 1.8E-11 57.0 5.0 41 2-43 32-72 (82)
42 cd00988 PDZ_CTP_protease PDZ d 98.3 1.1E-06 2.5E-11 56.9 4.9 40 2-42 19-58 (85)
43 TIGR02038 protease_degS peripl 98.3 2.3E-06 5E-11 70.2 7.6 45 43-90 278-322 (351)
44 TIGR01713 typeII_sec_gspC gene 98.3 3E-06 6.6E-11 66.6 7.6 45 44-91 192-236 (259)
45 KOG3606|consensus 98.3 2.3E-06 5E-11 66.5 6.2 51 44-94 195-245 (358)
46 PRK10898 serine endoprotease; 98.3 5.9E-06 1.3E-10 67.9 8.8 45 43-90 279-323 (353)
47 KOG3552|consensus 98.3 1.4E-06 3.1E-11 77.2 5.3 51 44-96 76-126 (1298)
48 smart00228 PDZ Domain present 98.2 2.4E-06 5.2E-11 55.0 5.0 41 2-43 32-72 (85)
49 PF04495 GRASP55_65: GRASP55/6 98.2 9.1E-06 2E-10 58.0 8.2 84 43-162 43-131 (138)
50 PF13180 PDZ_2: PDZ domain; PD 98.2 7.7E-07 1.7E-11 57.7 2.0 37 2-41 20-56 (82)
51 KOG3651|consensus 98.2 4.4E-06 9.5E-11 65.9 6.4 51 44-94 31-81 (429)
52 TIGR02860 spore_IV_B stage IV 98.2 1.5E-05 3.3E-10 65.9 9.3 39 53-94 123-161 (402)
53 KOG3553|consensus 98.1 1.3E-06 2.8E-11 57.9 2.1 41 2-43 65-105 (124)
54 cd00991 PDZ_archaeal_metallopr 98.0 4.2E-06 9.1E-11 53.9 3.0 38 2-42 16-53 (79)
55 KOG4407|consensus 98.0 5.4E-06 1.2E-10 75.7 3.8 92 3-97 103-196 (1973)
56 cd00989 PDZ_metalloprotease PD 98.0 1.1E-05 2.4E-10 51.5 4.3 37 2-41 18-54 (79)
57 PF12812 PDZ_1: PDZ-like domai 97.9 0.00019 4.2E-09 46.1 9.0 74 17-93 3-77 (78)
58 TIGR00054 RIP metalloprotease 97.9 5.2E-05 1.1E-09 63.7 8.1 48 44-94 129-176 (420)
59 cd00990 PDZ_glycyl_aminopeptid 97.9 1E-05 2.3E-10 51.8 2.5 30 2-32 18-47 (80)
60 KOG3542|consensus 97.9 6.2E-06 1.3E-10 71.4 1.8 48 44-92 563-610 (1283)
61 KOG0609|consensus 97.8 2.9E-05 6.4E-10 65.5 5.4 53 44-96 147-199 (542)
62 KOG3129|consensus 97.8 0.00013 2.8E-09 54.9 7.6 34 45-79 141-174 (231)
63 cd00987 PDZ_serine_protease PD 97.8 1.8E-05 4E-10 51.6 2.8 32 2-34 30-61 (90)
64 KOG3651|consensus 97.8 2.4E-05 5.2E-10 61.8 3.7 42 1-42 35-76 (429)
65 TIGR00225 prc C-terminal pepti 97.8 3.6E-05 7.9E-10 62.7 4.9 40 2-42 68-107 (334)
66 KOG1892|consensus 97.8 2E-05 4.4E-10 70.4 3.4 41 2-42 966-1006(1629)
67 PLN00049 carboxyl-terminal pro 97.8 4.1E-05 8.8E-10 63.7 5.1 40 2-42 108-147 (389)
68 cd00986 PDZ_LON_protease PDZ d 97.7 3.7E-05 8.1E-10 49.2 2.9 30 2-33 14-43 (79)
69 TIGR03279 cyano_FeS_chp putati 97.7 3.8E-05 8.3E-10 64.1 3.4 32 2-34 4-35 (433)
70 COG0793 Prc Periplasmic protea 97.6 7.2E-05 1.6E-09 62.5 4.8 41 2-43 118-158 (406)
71 COG3480 SdrC Predicted secrete 97.6 0.0004 8.6E-09 55.4 8.3 45 44-92 131-175 (342)
72 KOG3551|consensus 97.6 5.1E-05 1.1E-09 61.9 2.6 41 2-42 116-156 (506)
73 KOG4371|consensus 97.5 0.00015 3.2E-09 65.5 5.1 75 15-89 1187-1316(1332)
74 PF14685 Tricorn_PDZ: Tricorn 97.5 0.00085 1.8E-08 44.1 7.3 50 43-94 12-70 (88)
75 KOG3571|consensus 97.5 8.3E-05 1.8E-09 62.4 2.8 41 2-42 283-323 (626)
76 KOG1421|consensus 97.4 0.00042 9.2E-09 60.4 7.0 76 15-94 786-909 (955)
77 KOG3834|consensus 97.4 0.00086 1.9E-08 55.5 7.8 88 2-94 21-158 (462)
78 PRK11186 carboxy-terminal prot 97.4 0.0002 4.3E-09 63.3 4.2 42 2-43 261-307 (667)
79 TIGR01713 typeII_sec_gspC gene 97.4 0.00037 8.1E-09 54.9 5.3 41 2-43 197-238 (259)
80 KOG3552|consensus 97.3 0.00023 4.9E-09 63.7 3.8 75 2-78 81-173 (1298)
81 COG0265 DegQ Trypsin-like seri 97.2 0.00088 1.9E-08 54.8 6.3 45 44-91 271-315 (347)
82 KOG3938|consensus 97.2 0.0003 6.5E-09 54.8 3.2 50 45-94 151-200 (334)
83 PRK09681 putative type II secr 97.2 0.0012 2.7E-08 52.2 6.6 56 49-133 210-268 (276)
84 KOG1421|consensus 97.2 0.005 1.1E-07 54.0 10.5 84 2-94 309-450 (955)
85 KOG4371|consensus 97.1 0.00095 2.1E-08 60.5 5.2 100 45-173 1171-1278(1332)
86 KOG3606|consensus 97.0 0.00063 1.4E-08 53.2 3.2 40 2-41 200-239 (358)
87 KOG0606|consensus 96.9 0.0014 3.1E-08 59.9 5.3 50 46-96 661-710 (1205)
88 TIGR02038 protease_degS peripl 96.9 0.00076 1.6E-08 55.4 3.2 32 2-34 284-315 (351)
89 PRK10898 serine endoprotease; 96.9 0.00082 1.8E-08 55.3 3.1 32 2-34 285-316 (353)
90 KOG0609|consensus 96.9 0.0013 2.7E-08 55.9 4.1 42 2-43 152-193 (542)
91 COG3975 Predicted protease wit 96.8 0.00055 1.2E-08 58.1 1.4 30 44-74 463-492 (558)
92 KOG1320|consensus 96.8 0.015 3.4E-07 49.2 9.8 47 44-93 399-445 (473)
93 KOG3549|consensus 96.6 0.0013 2.9E-08 53.2 2.6 42 2-43 86-127 (505)
94 TIGR02860 spore_IV_B stage IV 96.6 0.0036 7.8E-08 52.1 5.1 28 6-34 123-150 (402)
95 KOG3834|consensus 96.5 0.011 2.3E-07 49.2 6.8 82 44-160 16-100 (462)
96 KOG3542|consensus 96.4 0.0012 2.6E-08 57.7 1.1 41 2-43 568-608 (1283)
97 COG3975 Predicted protease wit 95.7 0.0041 9E-08 52.9 0.9 25 2-27 468-492 (558)
98 PF04495 GRASP55_65: GRASP55/6 95.6 0.01 2.2E-07 42.4 2.4 31 2-33 49-80 (138)
99 KOG0606|consensus 95.5 0.012 2.6E-07 54.1 3.1 40 2-42 664-703 (1205)
100 KOG3532|consensus 95.4 0.038 8.2E-07 48.7 5.7 48 44-94 399-446 (1051)
101 COG0265 DegQ Trypsin-like seri 95.3 0.017 3.6E-07 47.3 3.3 31 2-33 276-306 (347)
102 KOG3532|consensus 95.2 0.016 3.6E-07 50.8 2.9 49 2-51 404-453 (1051)
103 KOG3129|consensus 95.0 0.036 7.8E-07 42.0 3.8 31 2-33 145-175 (231)
104 COG3031 PulC Type II secretory 94.2 0.16 3.4E-06 39.4 5.8 45 47-94 211-255 (275)
105 PRK09681 putative type II secr 94.2 0.051 1.1E-06 43.1 3.3 35 8-43 219-254 (276)
106 KOG1320|consensus 93.9 0.041 8.9E-07 46.7 2.4 32 2-34 404-435 (473)
107 KOG1738|consensus 93.8 0.058 1.3E-06 46.9 3.2 52 44-95 226-277 (638)
108 PF14685 Tricorn_PDZ: Tricorn 92.8 0.12 2.6E-06 33.9 2.8 26 7-32 31-57 (88)
109 COG3031 PulC Type II secretory 91.0 0.35 7.5E-06 37.6 3.9 35 5-42 216-250 (275)
110 KOG1738|consensus 89.4 0.33 7.2E-06 42.4 2.9 42 2-43 231-272 (638)
111 COG0750 Predicted membrane-ass 89.3 0.89 1.9E-05 37.4 5.4 42 47-91 133-174 (375)
112 COG0750 Predicted membrane-ass 88.2 0.51 1.1E-05 38.8 3.2 31 3-34 136-166 (375)
113 COG3480 SdrC Predicted secrete 86.9 1 2.2E-05 36.5 4.0 37 2-42 136-172 (342)
114 KOG3938|consensus 85.5 0.26 5.6E-06 38.8 0.1 42 2-43 155-196 (334)
115 PF07591 PT-HINT: Pretoxin HIN 84.6 0.54 1.2E-05 33.1 1.4 57 15-75 14-90 (130)
116 PF12812 PDZ_1: PDZ-like domai 83.4 1.3 2.8E-05 28.3 2.6 27 6-33 40-66 (78)
117 KOG4407|consensus 69.8 3 6.6E-05 39.9 2.0 41 2-43 149-189 (1973)
118 KOG2921|consensus 68.0 13 0.00028 31.2 5.0 45 44-90 221-265 (484)
119 PF11874 DUF3394: Domain of un 64.8 8.1 0.00018 28.9 3.1 28 43-71 122-149 (183)
120 PF14453 ThiS-like: ThiS-like 64.6 28 0.00061 20.8 5.2 50 21-71 2-54 (57)
121 COG5233 GRH1 Peripheral Golgi 55.3 7.2 0.00016 31.8 1.5 30 47-77 67-96 (417)
122 COG4072 Uncharacterized protei 55.1 30 0.00065 24.6 4.3 37 15-72 87-123 (161)
123 COG3127 Predicted ABC-type tra 43.5 19 0.00041 32.8 2.4 57 19-78 542-628 (829)
124 PRK13810 orotate phosphoribosy 41.9 34 0.00074 25.6 3.2 36 59-94 116-151 (187)
125 TIGR01164 rplP_bact ribosomal 40.9 27 0.00059 24.4 2.4 37 53-94 87-123 (126)
126 PRK09203 rplP 50S ribosomal pr 40.6 31 0.00066 24.5 2.7 37 53-94 88-124 (138)
127 cd01433 Ribosomal_L16_L10e Rib 39.5 31 0.00068 23.4 2.5 38 53-94 67-104 (112)
128 PF01455 HupF_HypC: HupF/HypC 39.5 38 0.00083 20.9 2.7 28 62-89 38-65 (68)
129 KOG2921|consensus 39.1 19 0.00041 30.3 1.5 21 13-34 238-258 (484)
130 PRK02290 3-dehydroquinate synt 38.7 8.6 0.00019 31.6 -0.4 67 4-70 238-324 (344)
131 PF14239 RRXRR: RRXRR protein 35.1 1.9E+02 0.0041 21.5 6.6 69 68-162 3-71 (176)
132 COG4100 Cystathionine beta-lya 34.4 31 0.00066 28.3 2.0 30 56-87 98-127 (416)
133 PRK07440 hypothetical protein; 32.4 92 0.002 19.1 3.6 52 19-71 4-64 (70)
134 COG5233 GRH1 Peripheral Golgi 32.1 31 0.00066 28.3 1.7 28 2-30 69-96 (417)
135 PRK06437 hypothetical protein; 31.6 1.2E+02 0.0027 18.3 5.0 51 19-71 2-61 (67)
136 PRK03760 hypothetical protein; 30.6 30 0.00066 23.8 1.3 25 43-69 89-113 (117)
137 KOG0792|consensus 30.2 25 0.00054 33.2 1.0 43 52-94 757-800 (1144)
138 PRK05659 sulfur carrier protei 30.0 84 0.0018 18.7 3.1 48 22-70 3-59 (66)
139 TIGR00223 panD L-aspartate-alp 29.9 95 0.0021 21.7 3.6 58 9-73 33-90 (126)
140 COG0197 RplP Ribosomal protein 29.9 53 0.0011 23.6 2.4 37 53-94 91-127 (146)
141 COG1625 Fe-S oxidoreductase, r 29.4 42 0.00092 28.4 2.1 31 2-33 7-38 (414)
142 cd06919 Asp_decarbox Aspartate 29.0 1E+02 0.0022 21.1 3.6 57 10-73 33-89 (111)
143 PRK13812 orotate phosphoribosy 28.9 69 0.0015 23.6 3.0 37 58-94 100-136 (176)
144 TIGR01744 XPRTase xanthine pho 28.8 64 0.0014 24.2 2.9 33 62-94 114-146 (191)
145 COG4273 Uncharacterized conser 28.6 1E+02 0.0022 21.7 3.5 73 16-94 14-91 (135)
146 PRK05449 aspartate alpha-decar 28.2 1E+02 0.0023 21.5 3.6 58 9-73 33-90 (126)
147 TIGR00739 yajC preprotein tran 28.1 43 0.00092 21.6 1.6 14 61-74 37-50 (84)
148 PRK09219 xanthine phosphoribos 28.0 62 0.0013 24.2 2.7 34 61-94 113-146 (189)
149 KOG3369|consensus 27.9 36 0.00078 25.3 1.3 29 55-84 46-74 (199)
150 COG0461 PyrE Orotate phosphori 27.9 86 0.0019 23.8 3.4 39 56-94 103-141 (201)
151 PRK08053 sulfur carrier protei 27.2 1.5E+02 0.0032 17.8 4.1 49 22-71 3-60 (66)
152 PRK05585 yajC preprotein trans 27.0 42 0.00092 22.7 1.5 15 61-75 52-66 (106)
153 KOG1712|consensus 26.9 96 0.0021 22.9 3.3 41 54-94 111-151 (183)
154 KOG1703|consensus 26.8 22 0.00047 30.6 0.1 49 45-94 23-71 (479)
155 PF06838 Met_gamma_lyase: Meth 26.5 50 0.0011 27.7 2.1 27 59-87 90-116 (403)
156 KOG0125|consensus 26.2 1.2E+02 0.0026 25.0 4.1 17 142-158 126-142 (376)
157 COG1625 Fe-S oxidoreductase, r 26.1 64 0.0014 27.3 2.6 34 46-80 4-38 (414)
158 PRK04199 rpl10e 50S ribosomal 25.7 78 0.0017 23.4 2.8 31 61-94 125-155 (172)
159 PRK10413 hydrogenase 2 accesso 25.5 1E+02 0.0022 19.8 3.0 27 15-41 43-69 (82)
160 KOG1753|consensus 25.5 53 0.0011 23.2 1.7 33 15-47 24-56 (145)
161 CHL00044 rpl16 ribosomal prote 25.3 73 0.0016 22.5 2.5 36 54-94 89-124 (135)
162 PLN02293 adenine phosphoribosy 24.9 87 0.0019 23.3 3.0 35 60-94 120-154 (187)
163 PRK13809 orotate phosphoribosy 24.5 92 0.002 23.6 3.1 36 59-94 112-147 (206)
164 PRK05500 bifunctional orotidin 24.5 87 0.0019 27.1 3.2 39 56-94 384-422 (477)
165 TIGR00074 hypC_hupF hydrogenas 24.2 1.2E+02 0.0026 19.1 3.1 29 62-90 36-64 (76)
166 PRK05886 yajC preprotein trans 24.0 53 0.0012 22.4 1.5 14 61-74 38-51 (109)
167 COG2519 GCD14 tRNA(1-methylade 23.6 1.3E+02 0.0028 23.8 3.8 57 15-72 43-102 (256)
168 TIGR00336 pyrE orotate phospho 23.6 88 0.0019 22.8 2.8 37 58-94 101-137 (173)
169 COG0307 RibC Riboflavin syntha 23.6 38 0.00082 25.8 0.8 15 15-30 33-47 (204)
170 PRK06531 yajC preprotein trans 23.3 52 0.0011 22.6 1.4 14 61-74 36-49 (113)
171 COG0853 PanD Aspartate 1-decar 23.1 1.3E+02 0.0027 21.1 3.2 58 9-73 32-89 (126)
172 COG2104 ThiS Sulfur transfer p 23.0 1.9E+02 0.0042 17.7 4.1 50 21-71 4-62 (68)
173 PF01079 Hint: Hint module; I 22.9 44 0.00095 25.7 1.1 27 44-70 84-114 (217)
174 PRK06083 sulfur carrier protei 22.9 1.8E+02 0.0039 18.7 3.8 53 18-71 17-78 (84)
175 PF15057 DUF4537: Domain of un 22.5 70 0.0015 22.2 2.0 24 47-71 42-65 (124)
176 PRK05863 sulfur carrier protei 22.3 1.9E+02 0.004 17.3 3.6 48 22-71 3-59 (65)
177 COG1465 Predicted alternative 22.2 38 0.00082 27.5 0.6 67 5-72 271-358 (376)
178 PF10902 DUF2693: Protein of u 22.0 40 0.00087 21.8 0.6 13 19-31 67-79 (83)
179 PF06838 Met_gamma_lyase: Meth 20.7 42 0.00092 28.1 0.6 27 12-40 90-116 (403)
180 PRK11536 6-N-hydroxylaminopuri 20.5 4.1E+02 0.0088 20.5 6.9 69 15-92 104-182 (223)
181 PRK03818 putative transporter; 20.4 2.5E+02 0.0053 24.8 5.3 53 20-72 207-262 (552)
182 COG1862 YajC Preprotein transl 20.4 75 0.0016 21.2 1.7 15 61-75 43-57 (97)
183 PF13403 Hint_2: Hint domain 20.3 84 0.0018 22.4 2.0 21 52-73 12-32 (147)
184 COG0260 PepB Leucyl aminopepti 20.3 1.1E+02 0.0024 26.6 3.1 32 45-78 300-331 (485)
185 PRK13669 hypothetical protein; 20.1 2.5E+02 0.0053 18.0 3.9 41 49-90 30-70 (78)
No 1
>KOG3209|consensus
Probab=99.95 E-value=2.8e-27 Score=199.40 Aligned_cols=173 Identities=27% Similarity=0.406 Sum_probs=129.3
Q ss_pred ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC--------------------------------------
Q psy1521 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG-------------------------------------- 43 (175)
Q Consensus 2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~-------------------------------------- 43 (175)
.|+|.|+|++||||+.||.|++|+|.+|...+|.+++.++..
T Consensus 680 ~Iv~lGaAe~DGRL~~gDElv~iDG~pV~GksH~~vv~Lm~~AArnghV~LtVRRkv~~~~~~rsp~~s~~~~~~yDV~l 759 (984)
T KOG3209|consen 680 AIVPLGAAEEDGRLREGDELVCIDGIPVEGKSHSEVVDLMEAAARNGHVNLTVRRKVRTGPARRSPRNSAAPSGPYDVVL 759 (984)
T ss_pred eeeecccccccCcccCCCeEEEecCeeccCccHHHHHHHHHHHHhcCceEEEEeeeeeeccccCCcccccCCCCCeeeEE
Confidence 478999999999999999999999999999999999999841
Q ss_pred -------------------CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCCCCCCCCCCCC
Q psy1521 44 -------------------GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVPSE 104 (175)
Q Consensus 44 -------------------gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~~~~~~~~~~~ 104 (175)
+.-|.+|++||||+++|+|++||+|++|||+++.+++|.+.+++||.++..++++..++.+
T Consensus 760 hR~ENeGFGFVi~sS~~kp~sgiGrIieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIKdaGlsVtLtIip~ee 839 (984)
T KOG3209|consen 760 HRKENEGFGFVIMSSQNKPESGIGRIIEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIKDAGLSVTLTIIPPEE 839 (984)
T ss_pred ecccCCceeEEEEecccCCCCCccccccCChhHhhccccccceEEEecCeeeeccCchhHHHHHHhcCceEEEEEcChhc
Confidence 1227799999999999999999999999999999999999999999999998877665544
Q ss_pred CCCCCCCC-----Ccccceeeeee--eeeecccCCC----------------CCCCCCceEEEEEEeCCCCCcCEEEEcC
Q psy1521 105 PNANATTG-----EKTTFYFHFQV--KLVVLRDTVT----------------KEDDLLEFVDVELTKKAGKGFGLSLVGR 161 (175)
Q Consensus 105 ~~~~~~~~-----~~~~~~~~~~v--~l~v~r~~~~----------------~~~~~~~~~~v~l~k~~~~~lGfsi~gg 161 (175)
.....++. .+.....++.. .+.-.|+.-. ........++|+|+ ++..||||||+||
T Consensus 840 ~~~~~~~~sa~~~s~~t~~~~~~q~~glp~~~~s~~~~~pqpdt~~~~~~~~r~~qn~~~~~VelE-rG~kGFGFSiRGG 918 (984)
T KOG3209|consen 840 AGPPTSMTSAEKQSPFTQNGPYEQQYGLPGPRPSVYEEHPQPDTFQGLSINDRMSQNGDLYTVELE-RGAKGFGFSIRGG 918 (984)
T ss_pred cCCCCCCcchhhcCcccccCCHhHccCCCCCCccccccCCCCccccceeccccccccCCeeEEEee-ccccccceEeecc
Confidence 32211110 11111111111 1111110000 11122368999999 6779999999999
Q ss_pred c-CCCceEEEeccCC
Q psy1521 162 K-QGPGVFISDLVSE 175 (175)
Q Consensus 162 ~-~~~gi~I~~i~~~ 175 (175)
+ ++.++||.++..+
T Consensus 919 reynM~LfVLRlAeD 933 (984)
T KOG3209|consen 919 REYNMDLFVLRLAED 933 (984)
T ss_pred cccccceEEEEeccC
Confidence 7 8899999988653
No 2
>KOG3209|consensus
Probab=99.81 E-value=1.1e-19 Score=153.85 Aligned_cols=93 Identities=29% Similarity=0.586 Sum_probs=89.4
Q ss_pred ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC--------------------------------------
Q psy1521 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG-------------------------------------- 43 (175)
Q Consensus 2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~-------------------------------------- 43 (175)
+|++||||++.|+|+.||+|++|||+++.+++|.+.+.+++.
T Consensus 784 rIieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIKdaGlsVtLtIip~ee~~~~~~~~sa~~~s~~t~~~~~~q 863 (984)
T KOG3209|consen 784 RIIEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIKDAGLSVTLTIIPPEEAGPPTSMTSAEKQSPFTQNGPYEQ 863 (984)
T ss_pred ccccCChhHhhccccccceEEEecCeeeeccCchhHHHHHHhcCceEEEEEcChhccCCCCCCcchhhcCcccccCCHhH
Confidence 689999999999999999999999999999999999999961
Q ss_pred ------------------------------------------------------------CeEEEEecCCCcccccCCcC
Q psy1521 44 ------------------------------------------------------------GILVHDIYPEGAAAKDARLK 63 (175)
Q Consensus 44 ------------------------------------------------------------gi~V~~v~~gg~A~~~G~L~ 63 (175)
++||.++..+|||.++|+++
T Consensus 864 ~~glp~~~~s~~~~~pqpdt~~~~~~~~r~~qn~~~~~VelErG~kGFGFSiRGGreynM~LfVLRlAeDGPA~rdGrm~ 943 (984)
T KOG3209|consen 864 QYGLPGPRPSVYEEHPQPDTFQGLSINDRMSQNGDLYTVELERGAKGFGFSIRGGREYNMDLFVLRLAEDGPAIRDGRMR 943 (984)
T ss_pred ccCCCCCCccccccCCCCccccceeccccccccCCeeEEEeeccccccceEeecccccccceEEEEeccCCCccccCcee
Confidence 68999999999999999999
Q ss_pred CCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521 64 FGDQILELTGEDFRNITHAKAMAHLRLTPAK 94 (175)
Q Consensus 64 ~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~ 94 (175)
+||+|++|||++..+++|..|.++||+.+..
T Consensus 944 VGDqi~eINGesTkgmtH~rAIelIk~gg~~ 974 (984)
T KOG3209|consen 944 VGDQITEINGESTKGMTHDRAIELIKQGGRR 974 (984)
T ss_pred ecceEEEecCcccCCCcHHHHHHHHHhCCeE
Confidence 9999999999999999999999999998877
No 3
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=99.61 E-value=1.1e-14 Score=122.56 Aligned_cols=89 Identities=24% Similarity=0.378 Sum_probs=71.6
Q ss_pred ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHH-HHHHh-----------hC--------------------------
Q psy1521 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEE-VATIM-----------KG-------------------------- 43 (175)
Q Consensus 2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~-~~~~l-----------~~-------------------------- 43 (175)
.|.|+|||+++| ||+||+|++|||+++.+++.-. .+... ++
T Consensus 132 ~V~~~SpA~kAG-Lk~GDvI~~vnG~~V~~~~~l~~~v~~~~~g~~v~v~v~R~gk~~~~~v~l~~~~~~~~~~~~~~~~ 210 (449)
T PRK10779 132 EIAPNSIAAQAQ-IAPGTELKAVDGIETPDWDAVRLALVSKIGDESTTITVAPFGSDQRRDKTLDLRHWAFEPDKQDPVS 210 (449)
T ss_pred ccCCCCHHHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhhccCCceEEEEEeCCccceEEEEecccccccCccccchhh
Confidence 588999999999 9999999999999999885421 11000 00
Q ss_pred -----------CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521 44 -----------GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK 94 (175)
Q Consensus 44 -----------gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~ 94 (175)
+..|..|.++|||+++| |++||+|++|||+.+. ++++..+.++...+.
T Consensus 211 ~lGl~~~~~~~~~vV~~V~~~SpA~~AG-L~~GDvIl~Ing~~V~--s~~dl~~~l~~~~~~ 269 (449)
T PRK10779 211 SLGIRPRGPQIEPVLAEVQPNSAASKAG-LQAGDRIVKVDGQPLT--QWQTFVTLVRDNPGK 269 (449)
T ss_pred cccccccCCCcCcEEEeeCCCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhCCCC
Confidence 26799999999999999 9999999999999995 568888888764433
No 4
>KOG3580|consensus
Probab=99.61 E-value=1.4e-15 Score=127.57 Aligned_cols=54 Identities=30% Similarity=0.404 Sum_probs=50.7
Q ss_pred CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCCCCC
Q psy1521 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKP 97 (175)
Q Consensus 44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~~~~ 97 (175)
-|||+++...|.|+++|+|+.||.||.|||...++++..++..+|.+...++++
T Consensus 220 qIFvKeit~~gLAardgnlqEGDiiLkINGtvteNmSLtDar~LIEkS~GKL~l 273 (1027)
T KOG3580|consen 220 QIFVKEITRTGLAARDGNLQEGDIILKINGTVTENMSLTDARKLIEKSRGKLQL 273 (1027)
T ss_pred hhhhhhhcccchhhccCCcccccEEEEECcEeeccccchhHHHHHHhccCceEE
Confidence 589999999999999999999999999999999999999999999998888553
No 5
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=99.60 E-value=1.6e-14 Score=120.53 Aligned_cols=89 Identities=26% Similarity=0.385 Sum_probs=72.4
Q ss_pred ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHH-HHHHhh----------------------------CCeEEEEecC
Q psy1521 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEE-VATIMK----------------------------GGILVHDIYP 52 (175)
Q Consensus 2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~-~~~~l~----------------------------~gi~V~~v~~ 52 (175)
.|.|+|||+++| |++||.|++|||..+.++.+-. .+.... .++.|..|.+
T Consensus 134 ~V~~~SpA~~AG-L~~GDvI~~vng~~v~~~~dl~~~ia~~~~~v~~~I~r~g~~~~l~v~l~~~~~~~~~g~vV~~V~~ 212 (420)
T TIGR00054 134 LLDKNSIALEAG-IEPGDEILSVNGNKIPGFKDVRQQIADIAGEPMVEILAERENWTFEVMKELIPRGPKIEPVLSDVTP 212 (420)
T ss_pred ccCCCCHHHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhhcccceEEEEEecCceEecccccceecCCCcCcEEEEECC
Confidence 578999999999 9999999999999998875421 111110 1468999999
Q ss_pred CCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521 53 EGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK 94 (175)
Q Consensus 53 gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~ 94 (175)
+|||+++| |++||+|++|||+++. ++++....++.....
T Consensus 213 ~SpA~~aG-L~~GD~Iv~Vng~~V~--s~~dl~~~l~~~~~~ 251 (420)
T TIGR00054 213 NSPAEKAG-LKEGDYIQSINGEKLR--SWTDFVSAVKENPGK 251 (420)
T ss_pred CCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhCCCC
Confidence 99999999 9999999999999995 478888888764443
No 6
>KOG3580|consensus
Probab=99.50 E-value=1.2e-13 Score=116.19 Aligned_cols=50 Identities=34% Similarity=0.525 Sum_probs=47.3
Q ss_pred CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK 94 (175)
Q Consensus 44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~ 94 (175)
||||..|..|+||++.| |+.||+||.||..++.++..++|+..|-..+..
T Consensus 430 GIFVaGvqegspA~~eG-lqEGDQIL~VN~vdF~nl~REeAVlfLL~lPkG 479 (1027)
T KOG3580|consen 430 GIFVAGVQEGSPAEQEG-LQEGDQILKVNTVDFRNLVREEAVLFLLELPKG 479 (1027)
T ss_pred eEEEeecccCCchhhcc-ccccceeEEeccccchhhhHHHHHHHHhcCCCC
Confidence 89999999999999999 999999999999999999999999998876655
No 7
>PRK10139 serine endoprotease; Provisional
Probab=99.49 E-value=3.4e-13 Score=113.58 Aligned_cols=89 Identities=21% Similarity=0.312 Sum_probs=72.9
Q ss_pred ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHH-HHHHHhh--------------------------------------
Q psy1521 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQE-EVATIMK-------------------------------------- 42 (175)
Q Consensus 2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~-~~~~~l~-------------------------------------- 42 (175)
.|.|+|||+++| |+.||+|++|||+++.+|..- .++...+
T Consensus 296 ~V~~~SpA~~AG-L~~GDvIl~InG~~V~s~~dl~~~l~~~~~g~~v~l~V~R~G~~~~l~v~~~~~~~~~~~~~~~~~~ 374 (455)
T PRK10139 296 EVLPNSGSAKAG-VKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTSTSSSASAEMITPA 374 (455)
T ss_pred EECCCChHHHCC-CCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEECCCCCccccccccccc
Confidence 578999999999 999999999999999988642 2222110
Q ss_pred ---------------CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521 43 ---------------GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK 94 (175)
Q Consensus 43 ---------------~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~ 94 (175)
.|++|..|.++|||+++| |++||+|++|||+.+. ++++...++++.+..
T Consensus 375 ~~g~~l~~~~~~~~~~Gv~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~--~~~~~~~~l~~~~~~ 438 (455)
T PRK10139 375 LQGATLSDGQLKDGTKGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVN--SIAEMRKVLAAKPAI 438 (455)
T ss_pred ccccEecccccccCCCceEEEEeCCCChHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhCCCe
Confidence 146799999999999999 9999999999999995 578888888875433
No 8
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=99.49 E-value=2.4e-13 Score=113.83 Aligned_cols=86 Identities=27% Similarity=0.421 Sum_probs=71.8
Q ss_pred ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCH-HHHHHHhh--------------------------------------
Q psy1521 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQ-EEVATIMK-------------------------------------- 42 (175)
Q Consensus 2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~-~~~~~~l~-------------------------------------- 42 (175)
.|.|+|||+++| |+.||+|++|||..+.++.+ .+++....
T Consensus 263 ~V~~~spA~~aG-L~~GDvI~~Vng~~i~~~~~~~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~~~~~~~~~~~~~lG 341 (428)
T TIGR02037 263 QVLPGSPAEKAG-LKAGDVILSVNGKPISSFADLRRAIGTLKPGKKVTLGILRKGKEKTITVTLGASPEEQASSSNPFLG 341 (428)
T ss_pred EccCCCChHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEECcCCCccccccccccc
Confidence 578999999999 99999999999999998753 22222110
Q ss_pred --------------------CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcC
Q psy1521 43 --------------------GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT 91 (175)
Q Consensus 43 --------------------~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~ 91 (175)
.|++|..|.++|+|+++| |++||+|++|||+.+. +.++..+++++.
T Consensus 342 i~~~~l~~~~~~~~~l~~~~~Gv~V~~V~~~SpA~~aG-L~~GDvI~~Ing~~V~--s~~d~~~~l~~~ 407 (428)
T TIGR02037 342 LTVANLSPEIRKELRLKGDVKGVVVTKVVSGSPAARAG-LQPGDVILSVNQQPVS--SVAELRKVLDRA 407 (428)
T ss_pred eEEecCCHHHHHHcCCCcCcCceEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhc
Confidence 268999999999999999 9999999999999996 468888888864
No 9
>PRK10942 serine endoprotease; Provisional
Probab=99.46 E-value=6.2e-13 Score=112.50 Aligned_cols=89 Identities=27% Similarity=0.384 Sum_probs=72.8
Q ss_pred ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHH-HHHHHhh--------------------------------------
Q psy1521 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQE-EVATIMK-------------------------------------- 42 (175)
Q Consensus 2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~-~~~~~l~-------------------------------------- 42 (175)
.|.|+|||+++| |+.||.|++|||..+.++..- .++....
T Consensus 317 ~V~~~SpA~~AG-L~~GDvIl~InG~~V~s~~dl~~~l~~~~~g~~v~l~v~R~G~~~~v~v~l~~~~~~~~~~~~~~lG 395 (473)
T PRK10942 317 QVLPNSSAAKAG-IKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKPVNVNVELQQSSQNQVDSSNIFNG 395 (473)
T ss_pred EECCCChHHHcC-CCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEECCeEEEEEEEeCcCccccccccccccc
Confidence 578999999999 999999999999999987531 2221110
Q ss_pred ------------CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521 43 ------------GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK 94 (175)
Q Consensus 43 ------------~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~ 94 (175)
.|++|..|.++|+|+++| |++||+|++|||+.+.+ .++..+++++.+..
T Consensus 396 l~g~~l~~~~~~~gvvV~~V~~~S~A~~aG-L~~GDvIv~VNg~~V~s--~~dl~~~l~~~~~~ 456 (473)
T PRK10942 396 IEGAELSNKGGDKGVVVDNVKPGTPAAQIG-LKKGDVIIGANQQPVKN--IAELRKILDSKPSV 456 (473)
T ss_pred ceeeecccccCCCCeEEEEeCCCChHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhCCCe
Confidence 147799999999999999 99999999999999965 68888888875533
No 10
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.35 E-value=1.6e-12 Score=84.36 Aligned_cols=51 Identities=29% Similarity=0.610 Sum_probs=48.9
Q ss_pred CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521 43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK 94 (175)
Q Consensus 43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~ 94 (175)
.++||..|.++|+|+++| |++||+|++|||+++.+++|.+++.+++.+...
T Consensus 25 ~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~ 75 (81)
T PF00595_consen 25 KGVFVSSVVPGSPAERAG-LKVGDRILEINGQSVRGMSHDEVVQLLKSASNP 75 (81)
T ss_dssp EEEEEEEECTTSHHHHHT-SSTTEEEEEETTEESTTSBHHHHHHHHHHSTSE
T ss_pred CCEEEEEEeCCChHHhcc-cchhhhhheeCCEeCCCCCHHHHHHHHHCCCCc
Confidence 378999999999999999 999999999999999999999999999998877
No 11
>KOG3605|consensus
Probab=99.27 E-value=9.8e-12 Score=105.34 Aligned_cols=90 Identities=31% Similarity=0.538 Sum_probs=80.2
Q ss_pred cCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC-------------------------------------Ce
Q psy1521 3 AVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG-------------------------------------GI 45 (175)
Q Consensus 3 v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~-------------------------------------gi 45 (175)
...+|||++.|+|-.||+|++|||..+..+.-..+-..+++ ||
T Consensus 680 mm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~KnQT~VkltiV~cpPV~~V~I~RPd~kyQLGFSVQNGi 759 (829)
T KOG3605|consen 680 MMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQTAVKLNIVSCPPVTTVLIRRPDLRYQLGFSVQNGI 759 (829)
T ss_pred cccCChhhhcCCccccceeEeecCceeccccHHHHHHHHhcccccceEEEEEecCCCceEEEeecccchhhccceeeCcE
Confidence 46799999999999999999999999999987766666652 54
Q ss_pred EEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521 46 LVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK 94 (175)
Q Consensus 46 ~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~ 94 (175)
|-++..||.|+|.| +++|-||++|||+++-...|+..+++|.++-..
T Consensus 760 -ICSLlRGGIAERGG-VRVGHRIIEINgQSVVA~pHekIV~lLs~aVGE 806 (829)
T KOG3605|consen 760 -ICSLLRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVQLLSNAVGE 806 (829)
T ss_pred -eehhhcccchhccC-ceeeeeEEEECCceEEeccHHHHHHHHHHhhhh
Confidence 66789999999998 999999999999999999999999999877665
No 12
>KOG3550|consensus
Probab=99.14 E-value=1.2e-10 Score=82.69 Aligned_cols=54 Identities=31% Similarity=0.458 Sum_probs=51.2
Q ss_pred CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCCCCC
Q psy1521 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKP 97 (175)
Q Consensus 44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~~~~ 97 (175)
+|||++|+|||.|++.|.|+.||++++|||.++++-.|+.|+.+||.+-..+++
T Consensus 116 piyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~gsvkl 169 (207)
T KOG3550|consen 116 PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAVGSVKL 169 (207)
T ss_pred ceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhcCcEEE
Confidence 899999999999999999999999999999999999999999999999888443
No 13
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=99.07 E-value=8.2e-10 Score=69.35 Aligned_cols=49 Identities=31% Similarity=0.535 Sum_probs=46.4
Q ss_pred CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCC
Q psy1521 43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTP 92 (175)
Q Consensus 43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~ 92 (175)
.+++|..|.+++||+.+| |++||+|++|||.++.+++++++.++++...
T Consensus 13 ~~~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~ 61 (70)
T cd00136 13 GGVVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKNLTLEDVAELLKKEV 61 (70)
T ss_pred CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhhCC
Confidence 378999999999999999 9999999999999999999999999999876
No 14
>KOG3605|consensus
Probab=99.07 E-value=7.9e-11 Score=99.97 Aligned_cols=83 Identities=18% Similarity=0.353 Sum_probs=68.8
Q ss_pred eEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCcccceeeeeee
Q psy1521 45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVPSEPNANATTGEKTTFYFHFQVK 124 (175)
Q Consensus 45 i~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 124 (175)
++|.+...+|||+++|+|..||+|++|||.+|-+++...+..++|+.++.. .|+
T Consensus 675 VViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~KnQT--------------------------~Vk 728 (829)
T KOG3605|consen 675 VVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQT--------------------------AVK 728 (829)
T ss_pred HHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHHhcccccc--------------------------eEE
Confidence 457789999999999999999999999999999999999999999988873 288
Q ss_pred eeecccCCCCCCCCCceEEEEEEeC-CCCCcCEEEEcC
Q psy1521 125 LVVLRDTVTKEDDLLEFVDVELTKK-AGKGFGLSLVGR 161 (175)
Q Consensus 125 l~v~r~~~~~~~~~~~~~~v~l~k~-~~~~lGfsi~gg 161 (175)
|++.+..+. .+|.+.+. -...|||++..|
T Consensus 729 ltiV~cpPV--------~~V~I~RPd~kyQLGFSVQNG 758 (829)
T KOG3605|consen 729 LNIVSCPPV--------TTVLIRRPDLRYQLGFSVQNG 758 (829)
T ss_pred EEEecCCCc--------eEEEeecccchhhccceeeCc
Confidence 998876443 56666542 256799998764
No 15
>KOG3553|consensus
Probab=99.06 E-value=1.2e-10 Score=76.87 Aligned_cols=47 Identities=30% Similarity=0.476 Sum_probs=45.4
Q ss_pred CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHc
Q psy1521 43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRL 90 (175)
Q Consensus 43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~ 90 (175)
.|+||++|.+||||+.+| |+.+|.|+.+||.++.-++|++|+..|++
T Consensus 59 ~GiYvT~V~eGsPA~~AG-LrihDKIlQvNG~DfTMvTHd~Avk~i~k 105 (124)
T KOG3553|consen 59 KGIYVTRVSEGSPAEIAG-LRIHDKILQVNGWDFTMVTHDQAVKRITK 105 (124)
T ss_pred ccEEEEEeccCChhhhhc-ceecceEEEecCceeEEEEhHHHHHHhhH
Confidence 499999999999999999 99999999999999999999999999987
No 16
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=99.03 E-value=3.1e-09 Score=69.26 Aligned_cols=51 Identities=27% Similarity=0.517 Sum_probs=45.2
Q ss_pred CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521 43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK 94 (175)
Q Consensus 43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~ 94 (175)
.+++|..|.+++||+++| |++||+|++|||+.+.++++.++..+++.....
T Consensus 13 ~~~~V~~v~~~s~a~~~g-l~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~ 63 (85)
T cd00988 13 GGLVITSVLPGSPAAKAG-IKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGT 63 (85)
T ss_pred CeEEEEEecCCCCHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCC
Confidence 378999999999999999 999999999999999998889998888764333
No 17
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=99.03 E-value=1.6e-09 Score=70.49 Aligned_cols=45 Identities=31% Similarity=0.515 Sum_probs=38.9
Q ss_pred CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHc
Q psy1521 43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRL 90 (175)
Q Consensus 43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~ 90 (175)
.+++|..|.++|||+++| |++||+|++|||..+. +..+....+.+
T Consensus 14 ~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~--~~~~~~~~l~~ 58 (82)
T PF13180_consen 14 GGVVVVSVIPGSPAAKAG-LQPGDIILAINGKPVN--SSEDLVNILSK 58 (82)
T ss_dssp SSEEEEEESTTSHHHHTT-S-TTEEEEEETTEESS--SHHHHHHHHHC
T ss_pred CeEEEEEeCCCCcHHHCC-CCCCcEEEEECCEEcC--CHHHHHHHHHh
Confidence 489999999999999999 9999999999999994 45777777753
No 18
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=99.00 E-value=2.3e-09 Score=69.44 Aligned_cols=51 Identities=39% Similarity=0.646 Sum_probs=47.2
Q ss_pred CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521 43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK 94 (175)
Q Consensus 43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~ 94 (175)
.+++|..|.++++|+++| |++||+|++|||+.+.++++.+...+++..+..
T Consensus 26 ~~~~i~~v~~~s~a~~~g-l~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~~ 76 (85)
T smart00228 26 GGVVVSSVVPGSPAAKAG-LKVGDVILEVNGTSVEGLTHLEAVDLLKKAGGK 76 (85)
T ss_pred CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCe
Confidence 489999999999999999 999999999999999999999999998886555
No 19
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=98.96 E-value=3.9e-09 Score=68.14 Aligned_cols=51 Identities=35% Similarity=0.658 Sum_probs=47.2
Q ss_pred CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521 43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK 94 (175)
Q Consensus 43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~ 94 (175)
.+++|..|.++++|+++| |++||+|++|||.++.++++.++..+++.....
T Consensus 26 ~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~~ 76 (82)
T cd00992 26 GGIFVSRVEPGGPAERGG-LRVGDRILEVNGVSVEGLTHEEAVELLKNSGDE 76 (82)
T ss_pred CCeEEEEECCCChHHhCC-CCCCCEEEEECCEEcCccCHHHHHHHHHhCCCe
Confidence 478999999999999988 999999999999999999999999999986554
No 20
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=98.87 E-value=2.8e-09 Score=69.02 Aligned_cols=41 Identities=39% Similarity=0.695 Sum_probs=38.7
Q ss_pred ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43 (175)
Q Consensus 2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~ 43 (175)
.|.|+|+|+++| |+.||+|++|||.++.++++.+++.+++.
T Consensus 31 ~v~~~~~a~~~g-l~~GD~Il~INg~~v~~~~~~~~~~~l~~ 71 (81)
T PF00595_consen 31 SVVPGSPAERAG-LKVGDRILEINGQSVRGMSHDEVVQLLKS 71 (81)
T ss_dssp EECTTSHHHHHT-SSTTEEEEEETTEESTTSBHHHHHHHHHH
T ss_pred EEeCCChHHhcc-cchhhhhheeCCEeCCCCCHHHHHHHHHC
Confidence 578999999999 99999999999999999999999999874
No 21
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.87 E-value=1.9e-08 Score=64.93 Aligned_cols=46 Identities=24% Similarity=0.380 Sum_probs=41.1
Q ss_pred CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcC
Q psy1521 43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT 91 (175)
Q Consensus 43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~ 91 (175)
.|++|..|.+++||+++| |++||+|++|||+.+. ++.+....++..
T Consensus 10 ~Gv~V~~V~~~spa~~aG-L~~GDiI~~Ing~~v~--~~~d~~~~l~~~ 55 (79)
T cd00991 10 AGVVIVGVIVGSPAENAV-LHTGDVIYSINGTPIT--TLEDFMEALKPT 55 (79)
T ss_pred CcEEEEEECCCChHHhcC-CCCCCEEEEECCEEcC--CHHHHHHHHhcC
Confidence 388999999999999999 9999999999999996 467888888764
No 22
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=98.76 E-value=9e-08 Score=80.38 Aligned_cols=45 Identities=31% Similarity=0.458 Sum_probs=39.3
Q ss_pred CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHc
Q psy1521 43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRL 90 (175)
Q Consensus 43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~ 90 (175)
.|++|..|.++|||+++| |++||+|++|||+.+.+ +.+...++..
T Consensus 257 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Vng~~i~~--~~~~~~~l~~ 301 (428)
T TIGR02037 257 RGALVAQVLPGSPAEKAG-LKAGDVILSVNGKPISS--FADLRRAIGT 301 (428)
T ss_pred CceEEEEccCCCChHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHh
Confidence 489999999999999999 99999999999999964 5666666654
No 23
>KOG3551|consensus
Probab=98.72 E-value=5.2e-09 Score=84.49 Aligned_cols=54 Identities=33% Similarity=0.487 Sum_probs=51.5
Q ss_pred CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCCCCC
Q psy1521 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKP 97 (175)
Q Consensus 44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~~~~ 97 (175)
+|.|++|++|-+|++.+.|..||.|++|||.++.+.||+||++.||+.+..+.+
T Consensus 111 PIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKraGkeV~l 164 (506)
T KOG3551|consen 111 PILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRAGKEVLL 164 (506)
T ss_pred ceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhhCceeee
Confidence 789999999999999999999999999999999999999999999999998644
No 24
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.72 E-value=1.7e-07 Score=60.28 Aligned_cols=44 Identities=25% Similarity=0.431 Sum_probs=38.6
Q ss_pred CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHc
Q psy1521 43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRL 90 (175)
Q Consensus 43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~ 90 (175)
.|++|..|.++|||+. | |++||.|++|||..+. ++++...+++.
T Consensus 8 ~Gv~V~~V~~~s~A~~-g-L~~GD~I~~Ing~~v~--~~~~~~~~l~~ 51 (79)
T cd00986 8 HGVYVTSVVEGMPAAG-K-LKAGDHIIAVDGKPFK--EAEELIDYIQS 51 (79)
T ss_pred cCEEEEEECCCCchhh-C-CCCCCEEEEECCEECC--CHHHHHHHHHh
Confidence 3789999999999996 8 9999999999999996 46778888875
No 25
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.72 E-value=1e-07 Score=61.07 Aligned_cols=46 Identities=26% Similarity=0.512 Sum_probs=40.2
Q ss_pred CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCC
Q psy1521 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTP 92 (175)
Q Consensus 44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~ 92 (175)
.++|..|.++++|+++| |++||+|++|||+.+.+ ++++...++...
T Consensus 13 ~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~--~~~~~~~l~~~~ 58 (79)
T cd00989 13 EPVIGEVVPGSPAAKAG-LKAGDRILAINGQKIKS--WEDLVDAVQENP 58 (79)
T ss_pred CcEEEeECCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHHCC
Confidence 46899999999999999 99999999999999964 678888887653
No 26
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.70 E-value=1.2e-07 Score=62.17 Aligned_cols=63 Identities=30% Similarity=0.440 Sum_probs=47.3
Q ss_pred CeeCCCCCHHHHHHH-h--hCCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcC
Q psy1521 26 GTDVRDKSQEEVATI-M--KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT 91 (175)
Q Consensus 26 g~~v~~~~~~~~~~~-l--~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~ 91 (175)
|..+.+.++...... + ..|++|..|.+++||+++| |++||+|++|||+.+.+ ..+...+++..
T Consensus 4 G~~~~~~~~~~~~~~~~~~~~g~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~i~~--~~~~~~~l~~~ 69 (90)
T cd00987 4 GVTVQDLTPDLAEELGLKDTKGVLVASVDPGSPAAKAG-LKPGDVILAVNGKPVKS--VADLRRALAEL 69 (90)
T ss_pred ceEEeECCHHHHHHcCCCCCCEEEEEEECCCCHHHHcC-CCcCCEEEEECCEECCC--HHHHHHHHHhc
Confidence 455555554433321 1 3489999999999999999 99999999999999965 46677777654
No 27
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=98.67 E-value=1.1e-07 Score=78.97 Aligned_cols=50 Identities=26% Similarity=0.411 Sum_probs=44.9
Q ss_pred CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK 94 (175)
Q Consensus 44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~ 94 (175)
+++|..|.++|||+++| |++||+|++|||+++.+.+..++..+|+.....
T Consensus 103 g~~V~~V~~~SPA~~aG-l~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~ 152 (389)
T PLN00049 103 GLVVVAPAPGGPAARAG-IRPGDVILAIDGTSTEGLSLYEAADRLQGPEGS 152 (389)
T ss_pred cEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCC
Confidence 68899999999999999 999999999999999998888988888764444
No 28
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=98.65 E-value=1.3e-07 Score=78.79 Aligned_cols=50 Identities=26% Similarity=0.407 Sum_probs=47.3
Q ss_pred CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK 94 (175)
Q Consensus 44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~ 94 (175)
++.|.++.+++||+++| |++||+|+.|||.++.+++.++++..|+.....
T Consensus 113 ~~~V~s~~~~~PA~kag-i~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt 162 (406)
T COG0793 113 GVKVVSPIDGSPAAKAG-IKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGT 162 (406)
T ss_pred CcEEEecCCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHhCCCCCC
Confidence 67899999999999999 999999999999999999999999999987776
No 29
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.65 E-value=1.3e-07 Score=60.75 Aligned_cols=35 Identities=23% Similarity=0.241 Sum_probs=32.5
Q ss_pred CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCC
Q psy1521 43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRN 78 (175)
Q Consensus 43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~ 78 (175)
+++.|..|.++|+|+++| |++||+|++|||+.+.+
T Consensus 12 ~~~~V~~V~~~s~a~~aG-l~~GD~I~~Ing~~v~~ 46 (80)
T cd00990 12 GLGKVTFVRDDSPADKAG-LVAGDELVAVNGWRVDA 46 (80)
T ss_pred CcEEEEEECCCChHHHhC-CCCCCEEEEECCEEhHH
Confidence 368999999999999999 99999999999999865
No 30
>KOG3549|consensus
Probab=98.64 E-value=5.2e-08 Score=77.94 Aligned_cols=53 Identities=25% Similarity=0.377 Sum_probs=51.3
Q ss_pred CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCCCC
Q psy1521 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96 (175)
Q Consensus 44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~~~ 96 (175)
+++|++|..+..|+..|.|-+||-|+.|||+.++.++|+|++++|+++++.++
T Consensus 81 PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNAGdeVt 133 (505)
T KOG3549|consen 81 PVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRNAGDEVT 133 (505)
T ss_pred cEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHhcCCEEE
Confidence 78999999999999999999999999999999999999999999999999965
No 31
>KOG1892|consensus
Probab=98.64 E-value=4.7e-08 Score=86.52 Aligned_cols=53 Identities=32% Similarity=0.499 Sum_probs=51.2
Q ss_pred CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCCCC
Q psy1521 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96 (175)
Q Consensus 44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~~~ 96 (175)
||||++|.+||+|+.+|+|+.||++|+|||+++-+++.+.|..++-+.+..+.
T Consensus 961 GIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtrtg~vV~ 1013 (1629)
T KOG1892|consen 961 GIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTRTGNVVH 1013 (1629)
T ss_pred ceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHhccCCeEE
Confidence 99999999999999999999999999999999999999999999999988864
No 32
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=98.64 E-value=6.7e-08 Score=60.49 Aligned_cols=41 Identities=41% Similarity=0.678 Sum_probs=37.9
Q ss_pred ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43 (175)
Q Consensus 2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~ 43 (175)
.|.++|||+..| |++||+|++|||.++.+++++++.++++.
T Consensus 19 ~v~~~s~a~~~g-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~ 59 (70)
T cd00136 19 SVEPGSPAERAG-LQAGDVILAVNGTDVKNLTLEDVAELLKK 59 (70)
T ss_pred EeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhh
Confidence 578999999988 99999999999999999999999988875
No 33
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=98.60 E-value=2.8e-07 Score=75.05 Aligned_cols=50 Identities=22% Similarity=0.393 Sum_probs=43.6
Q ss_pred CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK 94 (175)
Q Consensus 44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~ 94 (175)
+++|..|.++|||+++| |++||+|++|||+.+.+++..++..+++.....
T Consensus 63 ~~~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~ 112 (334)
T TIGR00225 63 EIVIVSPFEGSPAEKAG-IKPGDKIIKINGKSVAGMSLDDAVALIRGKKGT 112 (334)
T ss_pred EEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhccCCCCC
Confidence 57899999999999999 999999999999999988777888777654333
No 34
>PRK10139 serine endoprotease; Provisional
Probab=98.54 E-value=1.2e-06 Score=74.12 Aligned_cols=45 Identities=27% Similarity=0.483 Sum_probs=40.3
Q ss_pred CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHc
Q psy1521 43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRL 90 (175)
Q Consensus 43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~ 90 (175)
.|++|..|.++|||+++| |++||+|++|||+.+.+ +.+....+..
T Consensus 290 ~Gv~V~~V~~~SpA~~AG-L~~GDvIl~InG~~V~s--~~dl~~~l~~ 334 (455)
T PRK10139 290 RGAFVSEVLPNSGSAKAG-VKAGDIITSLNGKPLNS--FAELRSRIAT 334 (455)
T ss_pred CceEEEEECCCChHHHCC-CCCCCEEEEECCEECCC--HHHHHHHHHh
Confidence 589999999999999999 99999999999999964 6787777765
No 35
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=98.47 E-value=8e-07 Score=73.95 Aligned_cols=74 Identities=19% Similarity=0.290 Sum_probs=57.7
Q ss_pred EEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCcccceeeeeeeee
Q psy1521 47 VHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVPSEPNANATTGEKTTFYFHFQVKLV 126 (175)
Q Consensus 47 V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~ 126 (175)
|..|.|+|+|+++| |++||+|++|||+.+. ++.+....+. ... +.+.
T Consensus 2 I~~V~pgSpAe~AG-Le~GD~IlsING~~V~--Dw~D~~~~l~--~e~----------------------------l~L~ 48 (433)
T TIGR03279 2 ISAVLPGSIAEELG-FEPGDALVSINGVAPR--DLIDYQFLCA--DEE----------------------------LELE 48 (433)
T ss_pred cCCcCCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHhc--CCc----------------------------EEEE
Confidence 67899999999999 9999999999999995 4567665553 233 6777
Q ss_pred ec-ccCCCCCCCCCceEEEEEEeCCCCCcCEEEEcC
Q psy1521 127 VL-RDTVTKEDDLLEFVDVELTKKAGKGFGLSLVGR 161 (175)
Q Consensus 127 v~-r~~~~~~~~~~~~~~v~l~k~~~~~lGfsi~gg 161 (175)
+. |++ +.+++.+.++....||+.....
T Consensus 49 V~~rdG--------e~~~l~Ie~~~dedlG~~f~~~ 76 (433)
T TIGR03279 49 VLDANG--------ESHQIEIEKDLDEDLGLEFTTA 76 (433)
T ss_pred EEcCCC--------eEEEEEEecCCCCCCcEEeccc
Confidence 75 432 4578889888788999988653
No 36
>PRK10942 serine endoprotease; Provisional
Probab=98.46 E-value=2e-06 Score=73.11 Aligned_cols=46 Identities=30% Similarity=0.460 Sum_probs=40.3
Q ss_pred CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcC
Q psy1521 43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT 91 (175)
Q Consensus 43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~ 91 (175)
.|++|..|.++|||+++| |+.||+|++|||+.+.+ +++....++..
T Consensus 311 ~GvlV~~V~~~SpA~~AG-L~~GDvIl~InG~~V~s--~~dl~~~l~~~ 356 (473)
T PRK10942 311 RGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPISS--FAALRAQVGTM 356 (473)
T ss_pred CceEEEEECCCChHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHhc
Confidence 489999999999999999 99999999999999965 57777777653
No 37
>PRK11186 carboxy-terminal protease; Provisional
Probab=98.46 E-value=7.9e-07 Score=78.05 Aligned_cols=51 Identities=22% Similarity=0.333 Sum_probs=43.6
Q ss_pred CeEEEEecCCCcccccCCcCCCCEEEEEC--C---eecCCCCHHHHHHHHHcCCCC
Q psy1521 44 GILVHDIYPEGAAAKDARLKFGDQILELT--G---EDFRNITHAKAMAHLRLTPAK 94 (175)
Q Consensus 44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VN--G---~~l~~~~~~~a~~~lk~~~~~ 94 (175)
.++|..|.+||||++++.|++||+|++|| | .++.+++.++++.+|+...+.
T Consensus 256 ~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt 311 (667)
T PRK11186 256 YTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGS 311 (667)
T ss_pred eEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCC
Confidence 47899999999999983399999999999 4 356688889999999987766
No 38
>KOG3571|consensus
Probab=98.41 E-value=2.9e-07 Score=76.72 Aligned_cols=52 Identities=37% Similarity=0.572 Sum_probs=48.8
Q ss_pred CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521 43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK 94 (175)
Q Consensus 43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~ 94 (175)
+||||..|.++|+.+.+|++.+||.||.||.+++++++..+|+..|+..-.+
T Consensus 277 ggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV~~ 328 (626)
T KOG3571|consen 277 GGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAVSR 328 (626)
T ss_pred CceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHhcc
Confidence 5999999999999999999999999999999999999999999999965544
No 39
>KOG3550|consensus
Probab=98.41 E-value=2.8e-07 Score=65.68 Aligned_cols=43 Identities=37% Similarity=0.765 Sum_probs=40.7
Q ss_pred ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhCC
Q psy1521 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44 (175)
Q Consensus 2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~g 44 (175)
+|+|||.|++-|.|+-||++|+|||++|+.-.|+.++++|+..
T Consensus 121 riipggvadrhgglkrgdqllsvngvsvege~hekavellkaa 163 (207)
T KOG3550|consen 121 RIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAA 163 (207)
T ss_pred eecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHh
Confidence 6899999999999999999999999999999999999999853
No 40
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=98.40 E-value=1.3e-06 Score=73.84 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=35.2
Q ss_pred eEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHH
Q psy1521 45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89 (175)
Q Consensus 45 i~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk 89 (175)
.+|..|.++|||+++| |++||+|++|||+.+.+. ++....+.
T Consensus 128 ~lV~~V~~~SpA~kAG-Lk~GDvI~~vnG~~V~~~--~~l~~~v~ 169 (449)
T PRK10779 128 PVVGEIAPNSIAAQAQ-IAPGTELKAVDGIETPDW--DAVRLALV 169 (449)
T ss_pred ccccccCCCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHH
Confidence 3689999999999999 999999999999999765 55544443
No 41
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=98.36 E-value=8.4e-07 Score=57.04 Aligned_cols=41 Identities=39% Similarity=0.680 Sum_probs=37.5
Q ss_pred ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43 (175)
Q Consensus 2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~ 43 (175)
.|.++++|++.| |++||+|++|||.++.++++.++...++.
T Consensus 32 ~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~~~~~~~~~l~~ 72 (82)
T cd00992 32 RVEPGGPAERGG-LRVGDRILEVNGVSVEGLTHEEAVELLKN 72 (82)
T ss_pred EECCCChHHhCC-CCCCCEEEEECCEEcCccCHHHHHHHHHh
Confidence 578899999988 99999999999999999999999988864
No 42
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.32 E-value=1.1e-06 Score=56.95 Aligned_cols=40 Identities=35% Similarity=0.624 Sum_probs=36.3
Q ss_pred ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42 (175)
Q Consensus 2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~ 42 (175)
.|.+++||++.| |++||+|++|||..+.++++.++...++
T Consensus 19 ~v~~~s~a~~~g-l~~GD~I~~vng~~i~~~~~~~~~~~l~ 58 (85)
T cd00988 19 SVLPGSPAAKAG-IKAGDIIVAIDGEPVDGLSLEDVVKLLR 58 (85)
T ss_pred EecCCCCHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHhc
Confidence 578999999998 9999999999999999998888887774
No 43
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=98.31 E-value=2.3e-06 Score=70.19 Aligned_cols=45 Identities=27% Similarity=0.473 Sum_probs=39.9
Q ss_pred CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHc
Q psy1521 43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRL 90 (175)
Q Consensus 43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~ 90 (175)
.|++|..|.+++||+++| |++||+|++|||+.+.+ +++....+++
T Consensus 278 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s--~~dl~~~l~~ 322 (351)
T TIGR02038 278 RGIVITGVDPNGPAARAG-ILVRDVILKYDGKDVIG--AEELMDRIAE 322 (351)
T ss_pred ccceEeecCCCChHHHCC-CCCCCEEEEECCEEcCC--HHHHHHHHHh
Confidence 389999999999999999 99999999999999954 6777777765
No 44
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=98.29 E-value=3e-06 Score=66.61 Aligned_cols=45 Identities=24% Similarity=0.304 Sum_probs=40.3
Q ss_pred CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcC
Q psy1521 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT 91 (175)
Q Consensus 44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~ 91 (175)
|+.|..+.++++|+++| |++||.|++|||+++.+ .+++.+++.+.
T Consensus 192 G~~v~~v~~~s~a~~aG-Lr~GDvIv~ING~~i~~--~~~~~~~l~~~ 236 (259)
T TIGR01713 192 GYRLNPGKDPSLFYKSG-LQDGDIAVALNGLDLRD--PEQAFQALQML 236 (259)
T ss_pred EEEEEecCCCCHHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhc
Confidence 88899999999999999 99999999999999964 57788778764
No 45
>KOG3606|consensus
Probab=98.27 E-value=2.3e-06 Score=66.50 Aligned_cols=51 Identities=22% Similarity=0.380 Sum_probs=48.0
Q ss_pred CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK 94 (175)
Q Consensus 44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~ 94 (175)
||||+++.|||.|+..|-|-+.|++++|||+.+.+.|.+++..|+-+....
T Consensus 195 GIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDMMvANshN 245 (358)
T KOG3606|consen 195 GIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMVANSHN 245 (358)
T ss_pred ceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHHHHHHhhcccc
Confidence 999999999999999999999999999999999999999999998766555
No 46
>PRK10898 serine endoprotease; Provisional
Probab=98.26 E-value=5.9e-06 Score=67.86 Aligned_cols=45 Identities=24% Similarity=0.468 Sum_probs=38.9
Q ss_pred CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHc
Q psy1521 43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRL 90 (175)
Q Consensus 43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~ 90 (175)
.|++|..|.++|||+++| |++||+|++|||+.+.+ +.+....+.+
T Consensus 279 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s--~~~l~~~l~~ 323 (353)
T PRK10898 279 QGIVVNEVSPDGPAAKAG-IQVNDLIISVNNKPAIS--ALETMDQVAE 323 (353)
T ss_pred CeEEEEEECCCChHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHh
Confidence 489999999999999999 99999999999999954 5666666654
No 47
>KOG3552|consensus
Probab=98.25 E-value=1.4e-06 Score=77.20 Aligned_cols=51 Identities=22% Similarity=0.419 Sum_probs=47.9
Q ss_pred CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCCCC
Q psy1521 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96 (175)
Q Consensus 44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~~~ 96 (175)
+++|..|.+|||+. |+|++||+|++|||.++...+++.++++++.+...+.
T Consensus 76 PviVr~VT~GGps~--GKL~PGDQIl~vN~Epv~daprervIdlvRace~sv~ 126 (1298)
T KOG3552|consen 76 PVIVRFVTEGGPSI--GKLQPGDQILAVNGEPVKDAPRERVIDLVRACESSVN 126 (1298)
T ss_pred ceEEEEecCCCCcc--ccccCCCeEEEecCcccccccHHHHHHHHHHHhhhcc
Confidence 67899999999998 7899999999999999999999999999999999843
No 48
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=98.24 E-value=2.4e-06 Score=55.03 Aligned_cols=41 Identities=39% Similarity=0.585 Sum_probs=36.9
Q ss_pred ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43 (175)
Q Consensus 2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~ 43 (175)
.|.++|+|+++| |++||+|++|||..+.++++.+....++.
T Consensus 32 ~v~~~s~a~~~g-l~~GD~I~~In~~~v~~~~~~~~~~~~~~ 72 (85)
T smart00228 32 SVVPGSPAAKAG-LKVGDVILEVNGTSVEGLTHLEAVDLLKK 72 (85)
T ss_pred EECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence 478899999999 99999999999999999999888777654
No 49
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=98.23 E-value=9.1e-06 Score=57.96 Aligned_cols=84 Identities=19% Similarity=0.188 Sum_probs=57.8
Q ss_pred CCeEEEEecCCCcccccCCcCC-CCEEEEECCeecCCCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCcccceeee
Q psy1521 43 GGILVHDIYPEGAAAKDARLKF-GDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVPSEPNANATTGEKTTFYFHF 121 (175)
Q Consensus 43 ~gi~V~~v~~gg~A~~~G~L~~-GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (175)
.++-|.+|.|+|||+++| |++ .|.|+.+++..+.+ .++..+.+++..+.
T Consensus 43 ~~~~Vl~V~p~SPA~~AG-L~p~~DyIig~~~~~l~~--~~~l~~~v~~~~~~--------------------------- 92 (138)
T PF04495_consen 43 EGWHVLRVAPNSPAAKAG-LEPFFDYIIGIDGGLLDD--EDDLFELVEANENK--------------------------- 92 (138)
T ss_dssp CEEEEEEE-TTSHHHHTT---TTTEEEEEETTCE--S--TCHHHHHHHHTTTS---------------------------
T ss_pred ceEEEeEecCCCHHHHCC-ccccccEEEEccceecCC--HHHHHHHHHHcCCC---------------------------
Confidence 366799999999999999 998 69999999999875 46777788877666
Q ss_pred eeeeeecccCCCCCCCCCceEEEEEEeC----CCCCcCEEEEcCc
Q psy1521 122 QVKLVVLRDTVTKEDDLLEFVDVELTKK----AGKGFGLSLVGRK 162 (175)
Q Consensus 122 ~v~l~v~r~~~~~~~~~~~~~~v~l~k~----~~~~lGfsi~gg~ 162 (175)
++.|.|+.... ...++|++... +.+-||.+|..|-
T Consensus 93 ~l~L~Vyns~~------~~vR~V~i~P~~~WgG~GlLGc~ig~G~ 131 (138)
T PF04495_consen 93 PLQLYVYNSKT------DSVREVTITPSRNWGGRGLLGCHIGYGY 131 (138)
T ss_dssp -EEEEEEETTT------TCEEEEEE---TTSSSSTSSSEEEE-SG
T ss_pred cEEEEEEECCC------CeEEEEEEEcCCCCCCCeeeeEEeccee
Confidence 48898875422 34688888653 3456899997653
No 50
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=98.20 E-value=7.7e-07 Score=57.68 Aligned_cols=37 Identities=35% Similarity=0.689 Sum_probs=30.1
Q ss_pred ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHh
Q psy1521 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIM 41 (175)
Q Consensus 2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l 41 (175)
.|.++|||+++| |+.||.|++|||.++.++ .+....+
T Consensus 20 ~V~~~spA~~aG-l~~GD~I~~ing~~v~~~--~~~~~~l 56 (82)
T PF13180_consen 20 SVIPGSPAAKAG-LQPGDIILAINGKPVNSS--EDLVNIL 56 (82)
T ss_dssp EESTTSHHHHTT-S-TTEEEEEETTEESSSH--HHHHHHH
T ss_pred EeCCCCcHHHCC-CCCCcEEEEECCEEcCCH--HHHHHHH
Confidence 578999999999 999999999999999665 4444444
No 51
>KOG3651|consensus
Probab=98.19 E-value=4.4e-06 Score=65.93 Aligned_cols=51 Identities=20% Similarity=0.447 Sum_probs=48.4
Q ss_pred CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK 94 (175)
Q Consensus 44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~ 94 (175)
-+||..|..+.||+++|+++.||.|++|||+++.+.+..++.++++...+.
T Consensus 31 ClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~~e 81 (429)
T KOG3651|consen 31 CLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSLNE 81 (429)
T ss_pred eEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhccc
Confidence 368999999999999999999999999999999999999999999988777
No 52
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=98.16 E-value=1.5e-05 Score=65.93 Aligned_cols=39 Identities=15% Similarity=0.386 Sum_probs=33.8
Q ss_pred CCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521 53 EGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK 94 (175)
Q Consensus 53 gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~ 94 (175)
++||+++| |++||+|++|||+.+. +++++.+++++....
T Consensus 123 ~SPAa~AG-Lq~GDiIvsING~~V~--s~~DL~~iL~~~~g~ 161 (402)
T TIGR02860 123 HSPGEEAG-IQIGDRILKINGEKIK--NMDDLANLINKAGGE 161 (402)
T ss_pred CCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhCCCC
Confidence 68999999 9999999999999995 468888888876544
No 53
>KOG3553|consensus
Probab=98.14 E-value=1.3e-06 Score=57.93 Aligned_cols=41 Identities=24% Similarity=0.346 Sum_probs=37.7
Q ss_pred ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43 (175)
Q Consensus 2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~ 43 (175)
.|..||||+.+| ||.+|+|+.|||.+..-++|+.|++.++.
T Consensus 65 ~V~eGsPA~~AG-LrihDKIlQvNG~DfTMvTHd~Avk~i~k 105 (124)
T KOG3553|consen 65 RVSEGSPAEIAG-LRIHDKILQVNGWDFTMVTHDQAVKRITK 105 (124)
T ss_pred EeccCChhhhhc-ceecceEEEecCceeEEEEhHHHHHHhhH
Confidence 578999999999 99999999999999999999999887764
No 54
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.04 E-value=4.2e-06 Score=53.87 Aligned_cols=38 Identities=26% Similarity=0.387 Sum_probs=31.4
Q ss_pred ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42 (175)
Q Consensus 2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~ 42 (175)
.|.++|+|+++| |++||.|++|||..+.++. ++...+.
T Consensus 16 ~V~~~spa~~aG-L~~GDiI~~Ing~~v~~~~--d~~~~l~ 53 (79)
T cd00991 16 GVIVGSPAENAV-LHTGDVIYSINGTPITTLE--DFMEALK 53 (79)
T ss_pred EECCCChHHhcC-CCCCCEEEEECCEEcCCHH--HHHHHHh
Confidence 578999999999 9999999999999999764 4444443
No 55
>KOG4407|consensus
Probab=97.99 E-value=5.4e-06 Score=75.74 Aligned_cols=92 Identities=15% Similarity=0.264 Sum_probs=79.2
Q ss_pred cCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh--CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCC
Q psy1521 3 AVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK--GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNIT 80 (175)
Q Consensus 3 v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~--~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~ 80 (175)
+..++++..+| +-.+|.|..|||..+...+ .....+++ ..+||+.|.+++||..+. |+.||+++.||...+.++-
T Consensus 103 ~~s~~~~~nsG-~~s~~~v~~itG~e~~~~T-S~~~~~vk~~eT~~~~eV~~n~~~~~a~-LQ~~~~V~~v~~q~~A~i~ 179 (1973)
T KOG4407|consen 103 EASSAAGSNSG-SSSSVGVAGITGLEPTSPT-SLPPYQVKAMETIFIKEVQANGPAHYAN-LQTGDRVLMVNNQPIAGIA 179 (1973)
T ss_pred hcccCcccccC-cccccceeeecccccCCCc-cccHHHHhhhhhhhhhhhccCChhHHHh-hhccceeEEeecCcccchh
Confidence 34567777888 9999999999999998877 55555555 378999999999999998 9999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCC
Q psy1521 81 HAKAMAHLRLTPAKAKP 97 (175)
Q Consensus 81 ~~~a~~~lk~~~~~~~~ 97 (175)
..+++.++|+.....+|
T Consensus 180 ~s~~~S~~~qt~~~~~~ 196 (1973)
T KOG4407|consen 180 YSTIVSMIKQTPAVLTL 196 (1973)
T ss_pred hhhhhhhhccCCCCCCc
Confidence 99999999988776543
No 56
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.99 E-value=1.1e-05 Score=51.48 Aligned_cols=37 Identities=32% Similarity=0.663 Sum_probs=30.8
Q ss_pred ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHh
Q psy1521 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIM 41 (175)
Q Consensus 2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l 41 (175)
.|.++|+|++.| |++||.|++|||.++.++ +++...+
T Consensus 18 ~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~--~~~~~~l 54 (79)
T cd00989 18 EVVPGSPAAKAG-LKAGDRILAINGQKIKSW--EDLVDAV 54 (79)
T ss_pred eECCCCHHHHcC-CCCCCEEEEECCEECCCH--HHHHHHH
Confidence 578999999999 999999999999999976 3444444
No 57
>PF12812 PDZ_1: PDZ-like domain
Probab=97.91 E-value=0.00019 Score=46.12 Aligned_cols=74 Identities=14% Similarity=0.099 Sum_probs=61.7
Q ss_pred CCCEEEEECCeeCCCCCHHHHHHHh-hCCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCC
Q psy1521 17 KGDQIMSVDGTDVRDKSQEEVATIM-KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPA 93 (175)
Q Consensus 17 ~GD~Il~Vng~~v~~~~~~~~~~~l-~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~ 93 (175)
.-|+.+++-|-.+.+++|+.+.... .-+.++.....++++...| +..|-.|.+|||+++.+ .++..+.+|+.++
T Consensus 3 tp~r~v~~~Ga~f~~Ls~q~aR~~~~~~~gv~v~~~~g~~~~~~~-i~~g~iI~~Vn~kpt~~--Ld~f~~vvk~ipd 77 (78)
T PF12812_consen 3 TPSRFVEVCGAVFHDLSYQQARQYGIPVGGVYVAVSGGSLAFAGG-ISKGFIITSVNGKPTPD--LDDFIKVVKKIPD 77 (78)
T ss_pred cCCEEEEEcCeecccCCHHHHHHhCCCCCEEEEEecCCChhhhCC-CCCCeEEEeECCcCCcC--HHHHHHHHHhCCC
Confidence 3589999999999999999998873 3355566677888888766 99999999999999965 5899999988765
No 58
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=97.91 E-value=5.2e-05 Score=63.68 Aligned_cols=48 Identities=15% Similarity=0.273 Sum_probs=39.8
Q ss_pred CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK 94 (175)
Q Consensus 44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~ 94 (175)
+.+|..|.++|||+++| |++||+|++|||+.+.+ ..+..+.+......
T Consensus 129 g~~V~~V~~~SpA~~AG-L~~GDvI~~vng~~v~~--~~dl~~~ia~~~~~ 176 (420)
T TIGR00054 129 GPVIELLDKNSIALEAG-IEPGDEILSVNGNKIPG--FKDVRQQIADIAGE 176 (420)
T ss_pred CceeeccCCCCHHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhhccc
Confidence 66799999999999999 99999999999999965 56666666554444
No 59
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.86 E-value=1e-05 Score=51.78 Aligned_cols=30 Identities=27% Similarity=0.375 Sum_probs=27.6
Q ss_pred ccCCCChhhhcCCCCCCCEEEEECCeeCCCC
Q psy1521 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDK 32 (175)
Q Consensus 2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~ 32 (175)
.|.++|+|+++| |++||+|++|||.++.++
T Consensus 18 ~V~~~s~a~~aG-l~~GD~I~~Ing~~v~~~ 47 (80)
T cd00990 18 FVRDDSPADKAG-LVAGDELVAVNGWRVDAL 47 (80)
T ss_pred EECCCChHHHhC-CCCCCEEEEECCEEhHHH
Confidence 578999999999 999999999999999873
No 60
>KOG3542|consensus
Probab=97.86 E-value=6.2e-06 Score=71.39 Aligned_cols=48 Identities=46% Similarity=0.758 Sum_probs=45.9
Q ss_pred CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCC
Q psy1521 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTP 92 (175)
Q Consensus 44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~ 92 (175)
||||..|.||+.|+++| |+.||+|++|||++.++++...|..+|++.-
T Consensus 563 gifV~~V~pgskAa~~G-lKRgDqilEVNgQnfenis~~KA~eiLrnnt 610 (1283)
T KOG3542|consen 563 GIFVAEVFPGSKAAREG-LKRGDQILEVNGQNFENISAKKAEEILRNNT 610 (1283)
T ss_pred eeEEeeecCCchHHHhh-hhhhhhhhhccccchhhhhHHHHHHHhcCCc
Confidence 89999999999999999 9999999999999999999999999998754
No 61
>KOG0609|consensus
Probab=97.84 E-value=2.9e-05 Score=65.53 Aligned_cols=53 Identities=26% Similarity=0.371 Sum_probs=50.0
Q ss_pred CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCCCC
Q psy1521 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96 (175)
Q Consensus 44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~~~ 96 (175)
.+||.+|..||.|++.|.|+.||+|++|||+++.+....+...+|+++.+.++
T Consensus 147 ~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~G~it 199 (542)
T KOG0609|consen 147 KVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSRGSIT 199 (542)
T ss_pred ccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCCCcEE
Confidence 58999999999999999999999999999999999999999999999987744
No 62
>KOG3129|consensus
Probab=97.79 E-value=0.00013 Score=54.88 Aligned_cols=34 Identities=26% Similarity=0.419 Sum_probs=28.7
Q ss_pred eEEEEecCCCcccccCCcCCCCEEEEECCeecCCC
Q psy1521 45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNI 79 (175)
Q Consensus 45 i~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~ 79 (175)
.+|..|.|+|||+.+| |+.||.|+.+.+..--+.
T Consensus 141 a~V~sV~~~SPA~~aG-l~~gD~il~fGnV~sgn~ 174 (231)
T KOG3129|consen 141 AVVDSVVPGSPADEAG-LCVGDEILKFGNVHSGNF 174 (231)
T ss_pred EEEeecCCCChhhhhC-cccCceEEEecccccccc
Confidence 4689999999999999 999999999876554443
No 63
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.78 E-value=1.8e-05 Score=51.60 Aligned_cols=32 Identities=38% Similarity=0.602 Sum_probs=28.9
Q ss_pred ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCH
Q psy1521 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQ 34 (175)
Q Consensus 2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~ 34 (175)
.|.++++|+++| |++||.|++|||..+.++..
T Consensus 30 ~v~~~s~a~~~g-l~~GD~I~~Ing~~i~~~~~ 61 (90)
T cd00987 30 SVDPGSPAAKAG-LKPGDVILAVNGKPVKSVAD 61 (90)
T ss_pred EECCCCHHHHcC-CCcCCEEEEECCEECCCHHH
Confidence 578999999999 99999999999999988754
No 64
>KOG3651|consensus
Probab=97.77 E-value=2.4e-05 Score=61.84 Aligned_cols=42 Identities=36% Similarity=0.594 Sum_probs=39.0
Q ss_pred CccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521 1 MRAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42 (175)
Q Consensus 1 ~~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~ 42 (175)
++|..++||+++|+++.||.|+.|||+.|...+..++.++++
T Consensus 35 VQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ 76 (429)
T KOG3651|consen 35 VQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQ 76 (429)
T ss_pred EEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHH
Confidence 368899999999999999999999999999999988888876
No 65
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=97.77 E-value=3.6e-05 Score=62.69 Aligned_cols=40 Identities=23% Similarity=0.511 Sum_probs=35.7
Q ss_pred ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42 (175)
Q Consensus 2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~ 42 (175)
.|.++|||+++| |+.||+|++|||.++.+++..++...++
T Consensus 68 ~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~~~~~~~~~l~ 107 (334)
T TIGR00225 68 SPFEGSPAEKAG-IKPGDKIIKINGKSVAGMSLDDAVALIR 107 (334)
T ss_pred EeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhcc
Confidence 578999999999 9999999999999999998777777664
No 66
>KOG1892|consensus
Probab=97.77 E-value=2e-05 Score=70.43 Aligned_cols=41 Identities=49% Similarity=0.702 Sum_probs=38.9
Q ss_pred ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42 (175)
Q Consensus 2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~ 42 (175)
+|++||+|+.||||+.||++|+|||..+..++.+.|.+++.
T Consensus 966 sVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmt 1006 (1629)
T KOG1892|consen 966 SVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMT 1006 (1629)
T ss_pred EeccCCccccccccccCceeeeecCcccccccHHHHHHHHh
Confidence 68999999999999999999999999999999999998874
No 67
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=97.76 E-value=4.1e-05 Score=63.70 Aligned_cols=40 Identities=38% Similarity=0.570 Sum_probs=36.2
Q ss_pred ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42 (175)
Q Consensus 2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~ 42 (175)
.|.|+|||+++| |+.||+|++|||+++.+++..++..+++
T Consensus 108 ~V~~~SPA~~aG-l~~GD~Iv~InG~~v~~~~~~~~~~~l~ 147 (389)
T PLN00049 108 APAPGGPAARAG-IRPGDVILAIDGTSTEGLSLYEAADRLQ 147 (389)
T ss_pred EeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHh
Confidence 478999999999 9999999999999999998888877775
No 68
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.68 E-value=3.7e-05 Score=49.22 Aligned_cols=30 Identities=37% Similarity=0.522 Sum_probs=26.5
Q ss_pred ccCCCChhhhcCCCCCCCEEEEECCeeCCCCC
Q psy1521 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKS 33 (175)
Q Consensus 2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~ 33 (175)
.|.++|+|+. | |+.||.|++|||..+.++.
T Consensus 14 ~V~~~s~A~~-g-L~~GD~I~~Ing~~v~~~~ 43 (79)
T cd00986 14 SVVEGMPAAG-K-LKAGDHIIAVDGKPFKEAE 43 (79)
T ss_pred EECCCCchhh-C-CCCCCEEEEECCEECCCHH
Confidence 5789999986 8 9999999999999998764
No 69
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=97.66 E-value=3.8e-05 Score=64.08 Aligned_cols=32 Identities=34% Similarity=0.597 Sum_probs=30.0
Q ss_pred ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCH
Q psy1521 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQ 34 (175)
Q Consensus 2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~ 34 (175)
.|.|+|+|+++| |++||+|++|||..+.+|..
T Consensus 4 ~V~pgSpAe~AG-Le~GD~IlsING~~V~Dw~D 35 (433)
T TIGR03279 4 AVLPGSIAEELG-FEPGDALVSINGVAPRDLID 35 (433)
T ss_pred CcCCCCHHHHcC-CCCCCEEEEECCEECCCHHH
Confidence 689999999999 99999999999999998864
No 70
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=97.64 E-value=7.2e-05 Score=62.50 Aligned_cols=41 Identities=32% Similarity=0.588 Sum_probs=38.4
Q ss_pred ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43 (175)
Q Consensus 2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~ 43 (175)
...+++||+++| |++||+|++|||.++.+++.++++..+++
T Consensus 118 s~~~~~PA~kag-i~~GD~I~~IdG~~~~~~~~~~av~~irG 158 (406)
T COG0793 118 SPIDGSPAAKAG-IKPGDVIIKIDGKSVGGVSLDEAVKLIRG 158 (406)
T ss_pred ecCCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHhCC
Confidence 568999999999 99999999999999999999999999875
No 71
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=97.61 E-value=0.0004 Score=55.45 Aligned_cols=45 Identities=20% Similarity=0.401 Sum_probs=38.8
Q ss_pred CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCC
Q psy1521 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTP 92 (175)
Q Consensus 44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~ 92 (175)
|+|+..+..+++|. |.|+.||.|.+|||+++.+ .++....+++..
T Consensus 131 gvyv~~v~~~~~~~--gkl~~gD~i~avdg~~f~s--~~e~i~~v~~~k 175 (342)
T COG3480 131 GVYVLSVIDNSPFK--GKLEAGDTIIAVDGEPFTS--SDELIDYVSSKK 175 (342)
T ss_pred eEEEEEccCCcchh--ceeccCCeEEeeCCeecCC--HHHHHHHHhccC
Confidence 89999999999987 5699999999999999954 588888887543
No 72
>KOG3551|consensus
Probab=97.55 E-value=5.1e-05 Score=61.85 Aligned_cols=41 Identities=37% Similarity=0.626 Sum_probs=39.3
Q ss_pred ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42 (175)
Q Consensus 2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~ 42 (175)
+|.+|=.|++.+-|..||.||+|||.++.+.+|+|+++.|+
T Consensus 116 KIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLK 156 (506)
T KOG3551|consen 116 KIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALK 156 (506)
T ss_pred HhccccccccccceeeccEEEEecchhhhhcchHHHHHHHH
Confidence 68899999999999999999999999999999999999997
No 73
>KOG4371|consensus
Probab=97.51 E-value=0.00015 Score=65.48 Aligned_cols=75 Identities=31% Similarity=0.620 Sum_probs=68.9
Q ss_pred CCCCCEEEEECCeeCCCCCHHHHHHHhhC---------------------------------------------------
Q psy1521 15 LLKGDQIMSVDGTDVRDKSQEEVATIMKG--------------------------------------------------- 43 (175)
Q Consensus 15 L~~GD~Il~Vng~~v~~~~~~~~~~~l~~--------------------------------------------------- 43 (175)
|+.||.++.|||+.++..-|.+++.++++
T Consensus 1187 ~~~g~~l~~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~d~~~~s~~~~~~~l~~~~~~~~p~~~~~~~~~~~ 1266 (1332)
T KOG4371|consen 1187 IRVGDVLLYVNGIAVEGKVHQEVVAMLRGGGDRVVLGVQRPPPAYSDQHHASSTSASAPLISVMLLKKPMATLGLSLAKR 1266 (1332)
T ss_pred cchhhhhhhccceeeechhhHHHHHHHhccCceEEEEeecCCcccccchhhhhhcccchhhhheeeeccccccccccccc
Confidence 88999999999999999999999999862
Q ss_pred ----CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHH
Q psy1521 44 ----GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89 (175)
Q Consensus 44 ----gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk 89 (175)
|+|+..+...+.|.-.|.+++||++...+|+++.+.+..+..+-++
T Consensus 1267 ~~s~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~~~ 1316 (1332)
T KOG4371|consen 1267 TMSDGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDGFTPATILEKLK 1316 (1332)
T ss_pred CcCCceeeecccccccccccccccccceeeccCCccCCCCChHHHHHHhh
Confidence 8999999999999999999999999999999999998887776666
No 74
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=97.49 E-value=0.00085 Score=44.10 Aligned_cols=50 Identities=28% Similarity=0.425 Sum_probs=31.2
Q ss_pred CCeEEEEecCC--------CcccccC-CcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521 43 GGILVHDIYPE--------GAAAKDA-RLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK 94 (175)
Q Consensus 43 ~gi~V~~v~~g--------g~A~~~G-~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~ 94 (175)
+++-|.+|.++ ||..+.| .+++||.|++|||+.+..- .....+|.+..++
T Consensus 12 ~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~--~~~~~lL~~~agk 70 (88)
T PF14685_consen 12 GGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTAD--ANPYRLLEGKAGK 70 (88)
T ss_dssp TEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BTT--B-HHHHHHTTTTS
T ss_pred CEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCCC--CCHHHHhcccCCC
Confidence 35678999986 5655555 3569999999999999754 4456667766666
No 75
>KOG3571|consensus
Probab=97.46 E-value=8.3e-05 Score=62.43 Aligned_cols=41 Identities=27% Similarity=0.560 Sum_probs=39.3
Q ss_pred ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42 (175)
Q Consensus 2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~ 42 (175)
.|.++|+.|.|||+.+||.||.||.++.+|++..+|++.|+
T Consensus 283 sImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLR 323 (626)
T KOG3571|consen 283 SIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLR 323 (626)
T ss_pred eeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHH
Confidence 57899999999999999999999999999999999999997
No 76
>KOG1421|consensus
Probab=97.45 E-value=0.00042 Score=60.36 Aligned_cols=76 Identities=24% Similarity=0.194 Sum_probs=62.3
Q ss_pred CCCCCEEEEECCeeCCCCCHHHHHHHhh------------------------------------------------CCeE
Q psy1521 15 LLKGDQIMSVDGTDVRDKSQEEVATIMK------------------------------------------------GGIL 46 (175)
Q Consensus 15 L~~GD~Il~Vng~~v~~~~~~~~~~~l~------------------------------------------------~gi~ 46 (175)
|..||.||+|||+.+..++.-.-+..+. .|+|
T Consensus 786 l~~gdiilsvngk~itr~~dl~d~~eid~~ilrdg~~~~ikipt~p~~et~r~vi~~gailq~ph~av~~q~edlp~gvy 865 (955)
T KOG1421|consen 786 LGVGDIILSVNGKMITRLSDLHDFEEIDAVILRDGIEMEIKIPTYPEYETSRAVIWMGAILQPPHSAVFEQVEDLPEGVY 865 (955)
T ss_pred cccccEEEEecCeEEeeehhhhhhhhhheeeeecCcEEEEEeccccccccceEEEEEeccccCchHHHHHHHhccCCceE
Confidence 8899999999999988776311122221 3999
Q ss_pred EEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521 47 VHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK 94 (175)
Q Consensus 47 V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~ 94 (175)
+...-.||||.+ + |++-.-|.+|||+.. .+.++...+++..+..
T Consensus 866 vt~rg~gspalq-~-l~aa~fitavng~~t--~~lddf~~~~~~ipdn 909 (955)
T KOG1421|consen 866 VTSRGYGSPALQ-M-LRAAHFITAVNGHDT--NTLDDFYHMLLEIPDN 909 (955)
T ss_pred EeecccCChhHh-h-cchheeEEEeccccc--CcHHHHHHHHhhCCCC
Confidence 999999999999 7 999999999999998 4579999999887776
No 77
>KOG3834|consensus
Probab=97.39 E-value=0.00086 Score=55.47 Aligned_cols=88 Identities=17% Similarity=0.213 Sum_probs=63.8
Q ss_pred ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC--------------------------------------
Q psy1521 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG-------------------------------------- 43 (175)
Q Consensus 2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~-------------------------------------- 43 (175)
+|..+++|.++|-.---|-|++|||.-+.. ..+....+++.
T Consensus 21 kVqedSpa~~aglepffdFIvSI~g~rL~~-dnd~Lk~llk~~sekVkltv~n~kt~~~R~v~I~ps~~wggqllGvsvr 99 (462)
T KOG3834|consen 21 KVQEDSPAHKAGLEPFFDFIVSINGIRLNK-DNDTLKALLKANSEKVKLTVYNSKTQEVRIVEIVPSNNWGGQLLGVSVR 99 (462)
T ss_pred EeecCChHHhcCcchhhhhhheeCcccccC-chHHHHHHHHhcccceEEEEEecccceeEEEEecccccccccccceEEE
Confidence 688999999999555569999999998853 33333333320
Q ss_pred ----------CeEEEEecCCCcccccCCcC-CCCEEEEE-CCeecCCCCHHHHHHHHHcCCCC
Q psy1521 44 ----------GILVHDIYPEGAAAKDARLK-FGDQILEL-TGEDFRNITHAKAMAHLRLTPAK 94 (175)
Q Consensus 44 ----------gi~V~~v~~gg~A~~~G~L~-~GD~Il~V-NG~~l~~~~~~~a~~~lk~~~~~ 94 (175)
-+-|-+|.+++||+++| |+ -+|.|+-+ |.+. ...++...+|.....+
T Consensus 100 Fcsf~~A~~~vwHvl~V~p~SPaalAg-l~~~~DYivG~~~~~~---~~~eDl~~lIeshe~k 158 (462)
T KOG3834|consen 100 FCSFDGAVESVWHVLSVEPNSPAALAG-LRPYTDYIVGIWDAVM---HEEEDLFTLIESHEGK 158 (462)
T ss_pred eccCccchhheeeeeecCCCCHHHhcc-cccccceEecchhhhc---cchHHHHHHHHhccCC
Confidence 12377899999999999 87 78999988 5533 3456777777776666
No 78
>PRK11186 carboxy-terminal protease; Provisional
Probab=97.37 E-value=0.0002 Score=63.25 Aligned_cols=42 Identities=36% Similarity=0.529 Sum_probs=35.8
Q ss_pred ccCCCChhhhcCCCCCCCEEEEECC-----eeCCCCCHHHHHHHhhC
Q psy1521 2 RAVPGGIAATDGRLLKGDQIMSVDG-----TDVRDKSQEEVATIMKG 43 (175)
Q Consensus 2 ~v~~~~~A~~~G~L~~GD~Il~Vng-----~~v~~~~~~~~~~~l~~ 43 (175)
.|+|||||++++.|++||+|++||+ +++.+|+.++++.++++
T Consensus 261 ~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG 307 (667)
T PRK11186 261 SLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKG 307 (667)
T ss_pred EccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcC
Confidence 5889999999944999999999994 35668888899999974
No 79
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=97.36 E-value=0.00037 Score=54.87 Aligned_cols=41 Identities=22% Similarity=0.384 Sum_probs=32.3
Q ss_pred ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCH-HHHHHHhhC
Q psy1521 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQ-EEVATIMKG 43 (175)
Q Consensus 2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~-~~~~~~l~~ 43 (175)
.+.++++|++.| ||+||.|++|||.++.++.. .+++..++.
T Consensus 197 ~v~~~s~a~~aG-Lr~GDvIv~ING~~i~~~~~~~~~l~~~~~ 238 (259)
T TIGR01713 197 PGKDPSLFYKSG-LQDGDIAVALNGLDLRDPEQAFQALQMLRE 238 (259)
T ss_pred ecCCCCHHHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhcCC
Confidence 357899999999 99999999999999998754 333444433
No 80
>KOG3552|consensus
Probab=97.31 E-value=0.00023 Score=63.73 Aligned_cols=75 Identities=31% Similarity=0.467 Sum_probs=52.8
Q ss_pred ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC---CeEEEEecC---CCc------ccccCCcCCCCEE-
Q psy1521 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG---GILVHDIYP---EGA------AAKDARLKFGDQI- 68 (175)
Q Consensus 2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~---gi~V~~v~~---gg~------A~~~G~L~~GD~I- 68 (175)
-|.+|||+ .|+|++||+||.|||.+|.+...+.++++++. .+-+.-+.| .|| |++..+|+..-.=
T Consensus 81 ~VT~GGps--~GKL~PGDQIl~vN~Epv~daprervIdlvRace~sv~ltV~qPc~~p~pKStflSa~KrArLkSnPvkV 158 (1298)
T KOG3552|consen 81 FVTEGGPS--IGKLQPGDQILAVNGEPVKDAPRERVIDLVRACESSVNLTVCQPCVLPGPKSTFLSAGKRARLKSNPVKV 158 (1298)
T ss_pred EecCCCCc--cccccCCCeEEEecCcccccccHHHHHHHHHHHhhhcceEEeccccCCCchhhhhhhhhhhhhccCCcee
Confidence 36799999 89999999999999999999999999999873 333333332 111 3333447766422
Q ss_pred -----EEECCeecCC
Q psy1521 69 -----LELTGEDFRN 78 (175)
Q Consensus 69 -----l~VNG~~l~~ 78 (175)
+-|||..+..
T Consensus 159 rFaEeV~InG~~~~~ 173 (1298)
T KOG3552|consen 159 RFAEEVCINGAPLFP 173 (1298)
T ss_pred eeehhheecCcccCC
Confidence 3478876643
No 81
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.00088 Score=54.81 Aligned_cols=45 Identities=27% Similarity=0.408 Sum_probs=37.6
Q ss_pred CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcC
Q psy1521 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT 91 (175)
Q Consensus 44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~ 91 (175)
|++|..+.+++||+++| ++.||.|+++||..+.+ ..+....+...
T Consensus 271 G~~V~~v~~~spa~~ag-i~~Gdii~~vng~~v~~--~~~l~~~v~~~ 315 (347)
T COG0265 271 GAVVLGVLPGSPAAKAG-IKAGDIITAVNGKPVAS--LSDLVAAVASN 315 (347)
T ss_pred ceEEEecCCCChHHHcC-CCCCCEEEEECCEEccC--HHHHHHHHhcc
Confidence 68999999999999999 99999999999999965 45555555433
No 82
>KOG3938|consensus
Probab=97.22 E-value=0.0003 Score=54.78 Aligned_cols=50 Identities=18% Similarity=0.260 Sum_probs=46.8
Q ss_pred eEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521 45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK 94 (175)
Q Consensus 45 i~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~ 94 (175)
.||+.|.++|.-++--.+++||.|-+|||+++-++.|.++..+||.....
T Consensus 151 AFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~rg 200 (334)
T KOG3938|consen 151 AFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPRG 200 (334)
T ss_pred eeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcccC
Confidence 48999999999998878999999999999999999999999999987766
No 83
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=97.20 E-value=0.0012 Score=52.16 Aligned_cols=56 Identities=25% Similarity=0.424 Sum_probs=42.5
Q ss_pred EecCCCcc---cccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCcccceeeeeeee
Q psy1521 49 DIYPEGAA---AKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVPSEPNANATTGEKTTFYFHFQVKL 125 (175)
Q Consensus 49 ~v~~gg~A---~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l 125 (175)
++.|+..+ .+.| |++||.+++|||.++.+ .+++.++++...... .++|
T Consensus 210 rl~Pgkd~~lF~~~G-Lq~GDva~sING~dL~D--~~qa~~l~~~L~~~t--------------------------ei~l 260 (276)
T PRK09681 210 AVKPGADRSLFDASG-FKEGDIAIALNQQDFTD--PRAMIALMRQLPSMD--------------------------SIQL 260 (276)
T ss_pred EECCCCcHHHHHHcC-CCCCCEEEEeCCeeCCC--HHHHHHHHHHhccCC--------------------------eEEE
Confidence 67777544 5678 99999999999999975 477777777655541 2889
Q ss_pred eecccCCC
Q psy1521 126 VVLRDTVT 133 (175)
Q Consensus 126 ~v~r~~~~ 133 (175)
++.|++..
T Consensus 261 tVeRdGq~ 268 (276)
T PRK09681 261 TVLRKGAR 268 (276)
T ss_pred EEEECCEE
Confidence 99998654
No 84
>KOG1421|consensus
Probab=97.19 E-value=0.005 Score=53.97 Aligned_cols=84 Identities=19% Similarity=0.251 Sum_probs=64.6
Q ss_pred ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh---------------------------------------
Q psy1521 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK--------------------------------------- 42 (175)
Q Consensus 2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~--------------------------------------- 42 (175)
.+.|+|+|.+. |++||.+++||+..+.++. ++-+.|-
T Consensus 309 ~vL~~gpa~k~--Le~GDillavN~t~l~df~--~l~~iLDegvgk~l~LtI~Rggqelel~vtvqdlh~itp~R~levc 384 (955)
T KOG1421|consen 309 TVLPEGPAEKK--LEPGDILLAVNSTCLNDFE--ALEQILDEGVGKNLELTIQRGGQELELTVTVQDLHGITPDRFLEVC 384 (955)
T ss_pred EeccCCchhhc--cCCCcEEEEEcceehHHHH--HHHHHHhhccCceEEEEEEeCCEEEEEEEEeccccCCCCceEEEEc
Confidence 47899999654 9999999999988776542 2222221
Q ss_pred -------------------CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521 43 -------------------GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK 94 (175)
Q Consensus 43 -------------------~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~ 94 (175)
+|+||++-- ++++.+.+ +. |-.|.+||+++..+ .+..+..+|.....
T Consensus 385 Gav~hdlsyq~ar~y~lP~~GvyVa~~~-gsf~~~~~-~y-~~ii~~vanK~tPd--LdaFidvlk~L~dg 450 (955)
T KOG1421|consen 385 GAVFHDLSYQLARLYALPVEGVYVASPG-GSFRHRGP-RY-GQIIDSVANKPTPD--LDAFIDVLKELPDG 450 (955)
T ss_pred ceEecCCCHHHHhhcccccCcEEEccCC-CCccccCC-cc-eEEEEeecCCcCCC--HHHHHHHHHhccCC
Confidence 288998876 88888866 66 88999999999854 58889999988777
No 85
>KOG4371|consensus
Probab=97.06 E-value=0.00095 Score=60.50 Aligned_cols=100 Identities=26% Similarity=0.367 Sum_probs=77.0
Q ss_pred eEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCcccceeeeeee
Q psy1521 45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVPSEPNANATTGEKTTFYFHFQVK 124 (175)
Q Consensus 45 i~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 124 (175)
+.++...-.+.-.+-. |+.||.++.+||+-+++.-|.+++.+++..++. +.
T Consensus 1171 ~~~~~~~~~~~~~~pd-~~~g~~l~~~n~i~~~~~~~~~~~~~~~~~~~~----------------------------~~ 1221 (1332)
T KOG4371|consen 1171 VCIKQLTSEPAISHPD-IRVGDVLLYVNGIAVEGKVHQEVVAMLRGGGDR----------------------------VV 1221 (1332)
T ss_pred eehhhcccCCCCCCCC-cchhhhhhhccceeeechhhHHHHHHHhccCce----------------------------EE
Confidence 3445555444444445 999999999999999999999999999999888 78
Q ss_pred eeecccCCCCC--------CCCCceEEEEEEeCCCCCcCEEEEcCcCCCceEEEecc
Q psy1521 125 LVVLRDTVTKE--------DDLLEFVDVELTKKAGKGFGLSLVGRKQGPGVFISDLV 173 (175)
Q Consensus 125 l~v~r~~~~~~--------~~~~~~~~v~l~k~~~~~lGfsi~gg~~~~gi~I~~i~ 173 (175)
|.+.|+.+.-. ......+.+.|.+++..++|+++.......||||..|.
T Consensus 1222 ~~~~r~~~~~~d~~~~s~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~ 1278 (1332)
T KOG4371|consen 1222 LGVQRPPPAYSDQHHASSTSASAPLISVMLLKKPMATLGLSLAKRTMSDGIFIRNIA 1278 (1332)
T ss_pred EEeecCCcccccchhhhhhcccchhhhheeeecccccccccccccCcCCceeeeccc
Confidence 88877765311 11124577788889999999999988877899998764
No 86
>KOG3606|consensus
Probab=97.01 E-value=0.00063 Score=53.19 Aligned_cols=40 Identities=38% Similarity=0.736 Sum_probs=37.4
Q ss_pred ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHh
Q psy1521 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIM 41 (175)
Q Consensus 2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l 41 (175)
+++|||.|+..|-|..+|.||+|||+.|..++-+++-.++
T Consensus 200 RlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDMM 239 (358)
T KOG3606|consen 200 RLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMM 239 (358)
T ss_pred eecCCccccccceeeecceeEEEcCEEeccccHHHHHHHH
Confidence 5789999999999999999999999999999998888876
No 87
>KOG0606|consensus
Probab=96.94 E-value=0.0014 Score=59.85 Aligned_cols=50 Identities=24% Similarity=0.302 Sum_probs=46.5
Q ss_pred EEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCCCC
Q psy1521 46 LVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96 (175)
Q Consensus 46 ~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~~~ 96 (175)
.|.+|.+++||..+| |++||.|+.|||+++.++.|.|++++|-+.+.++.
T Consensus 661 ~v~sv~egsPA~~ag-ls~~DlIthvnge~v~gl~H~ev~~Lll~~gn~v~ 710 (1205)
T KOG0606|consen 661 SVGSVEEGSPAFEAG-LSAGDLITHVNGEPVHGLVHTEVMELLLKSGNKVT 710 (1205)
T ss_pred eeeeecCCCCccccC-CCccceeEeccCcccchhhHHHHHHHHHhcCCeeE
Confidence 478999999999999 99999999999999999999999999998888844
No 88
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=96.92 E-value=0.00076 Score=55.42 Aligned_cols=32 Identities=38% Similarity=0.531 Sum_probs=29.0
Q ss_pred ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCH
Q psy1521 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQ 34 (175)
Q Consensus 2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~ 34 (175)
.|.++|||+++| |++||.|++|||.++.++..
T Consensus 284 ~V~~~spA~~aG-L~~GDvI~~Ing~~V~s~~d 315 (351)
T TIGR02038 284 GVDPNGPAARAG-ILVRDVILKYDGKDVIGAEE 315 (351)
T ss_pred ecCCCChHHHCC-CCCCCEEEEECCEEcCCHHH
Confidence 578999999999 99999999999999987643
No 89
>PRK10898 serine endoprotease; Provisional
Probab=96.88 E-value=0.00082 Score=55.27 Aligned_cols=32 Identities=28% Similarity=0.386 Sum_probs=29.0
Q ss_pred ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCH
Q psy1521 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQ 34 (175)
Q Consensus 2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~ 34 (175)
.|.++|||+++| |+.||.|++|||.++.++..
T Consensus 285 ~V~~~spA~~aG-L~~GDvI~~Ing~~V~s~~~ 316 (353)
T PRK10898 285 EVSPDGPAAKAG-IQVNDLIISVNNKPAISALE 316 (353)
T ss_pred EECCCChHHHcC-CCCCCEEEEECCEEcCCHHH
Confidence 578999999999 99999999999999987643
No 90
>KOG0609|consensus
Probab=96.87 E-value=0.0013 Score=55.93 Aligned_cols=42 Identities=38% Similarity=0.694 Sum_probs=39.1
Q ss_pred ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43 (175)
Q Consensus 2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~ 43 (175)
+|..||.|++.|.|+.||.|++|||+.+.+.+..++..++++
T Consensus 152 RI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~ 193 (542)
T KOG0609|consen 152 RIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRN 193 (542)
T ss_pred eeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHh
Confidence 578899999999999999999999999999999999988863
No 91
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=96.79 E-value=0.00055 Score=58.05 Aligned_cols=30 Identities=30% Similarity=0.486 Sum_probs=28.6
Q ss_pred CeEEEEecCCCcccccCCcCCCCEEEEECCe
Q psy1521 44 GILVHDIYPEGAAAKDARLKFGDQILELTGE 74 (175)
Q Consensus 44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~ 74 (175)
...|+.|.++|||+++| |.+||+|++|||.
T Consensus 463 ~~~i~~V~~~gPA~~AG-l~~Gd~ivai~G~ 492 (558)
T COG3975 463 HEKITFVFPGGPAYKAG-LSPGDKIVAINGI 492 (558)
T ss_pred eeEEEecCCCChhHhcc-CCCccEEEEEcCc
Confidence 56799999999999999 9999999999998
No 92
>KOG1320|consensus
Probab=96.76 E-value=0.015 Score=49.25 Aligned_cols=47 Identities=21% Similarity=0.379 Sum_probs=40.7
Q ss_pred CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCC
Q psy1521 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPA 93 (175)
Q Consensus 44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~ 93 (175)
+++++.|.+++++...+ +++||.|++|||+.+.++ .+...+++.+..
T Consensus 399 ~v~is~Vlp~~~~~~~~-~~~g~~V~~vng~~V~n~--~~l~~~i~~~~~ 445 (473)
T KOG1320|consen 399 LVLVSQVLPGSINGGYG-LKPGDQVVKVNGKPVKNL--KHLYELIEECST 445 (473)
T ss_pred EEEEEEeccCCCccccc-ccCCCEEEEECCEEeech--HHHHHHHHhcCc
Confidence 57899999999999988 999999999999999886 556677776654
No 93
>KOG3549|consensus
Probab=96.65 E-value=0.0013 Score=53.16 Aligned_cols=42 Identities=31% Similarity=0.494 Sum_probs=38.7
Q ss_pred ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43 (175)
Q Consensus 2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~ 43 (175)
+|..+-.|+..|.|=.||-||.|||+.|++..|+|++.+|++
T Consensus 86 kI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRN 127 (505)
T KOG3549|consen 86 KIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRN 127 (505)
T ss_pred hhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHh
Confidence 566777899999999999999999999999999999999985
No 94
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=96.63 E-value=0.0036 Score=52.11 Aligned_cols=28 Identities=18% Similarity=0.503 Sum_probs=25.4
Q ss_pred CChhhhcCCCCCCCEEEEECCeeCCCCCH
Q psy1521 6 GGIAATDGRLLKGDQIMSVDGTDVRDKSQ 34 (175)
Q Consensus 6 ~~~A~~~G~L~~GD~Il~Vng~~v~~~~~ 34 (175)
++||+++| |+.||.|++|||.++.+|..
T Consensus 123 ~SPAa~AG-Lq~GDiIvsING~~V~s~~D 150 (402)
T TIGR02860 123 HSPGEEAG-IQIGDRILKINGEKIKNMDD 150 (402)
T ss_pred CCHHHHcC-CCCCCEEEEECCEECCCHHH
Confidence 68999999 99999999999999998754
No 95
>KOG3834|consensus
Probab=96.48 E-value=0.011 Score=49.19 Aligned_cols=82 Identities=26% Similarity=0.282 Sum_probs=60.2
Q ss_pred CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCcccceeeeee
Q psy1521 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVPSEPNANATTGEKTTFYFHFQV 123 (175)
Q Consensus 44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 123 (175)
|.-|.+|..+++|+++|-.---|-|++|||..|.. ..+....+||..-.+ |
T Consensus 16 g~hvlkVqedSpa~~aglepffdFIvSI~g~rL~~-dnd~Lk~llk~~sek----------------------------V 66 (462)
T KOG3834|consen 16 GYHVLKVQEDSPAHKAGLEPFFDFIVSINGIRLNK-DNDTLKALLKANSEK----------------------------V 66 (462)
T ss_pred eEEEEEeecCChHHhcCcchhhhhhheeCcccccC-chHHHHHHHHhcccc----------------------------e
Confidence 66799999999999999445568999999999864 355666666766666 7
Q ss_pred eeeecccCCCCCCCCCceEEEEEEeCCCCC---cCEEEEc
Q psy1521 124 KLVVLRDTVTKEDDLLEFVDVELTKKAGKG---FGLSLVG 160 (175)
Q Consensus 124 ~l~v~r~~~~~~~~~~~~~~v~l~k~~~~~---lGfsi~g 160 (175)
+|++...+. ...|.+.+......+ ||++|+-
T Consensus 67 kltv~n~kt------~~~R~v~I~ps~~wggqllGvsvrF 100 (462)
T KOG3834|consen 67 KLTVYNSKT------QEVRIVEIVPSNNWGGQLLGVSVRF 100 (462)
T ss_pred EEEEEeccc------ceeEEEEecccccccccccceEEEe
Confidence 888764422 356778887655444 7888863
No 96
>KOG3542|consensus
Probab=96.44 E-value=0.0012 Score=57.74 Aligned_cols=41 Identities=34% Similarity=0.666 Sum_probs=38.7
Q ss_pred ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43 (175)
Q Consensus 2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~ 43 (175)
.|.||+-|+++| |+-||+|++|||++.++++-..|.++|++
T Consensus 568 ~V~pgskAa~~G-lKRgDqilEVNgQnfenis~~KA~eiLrn 608 (1283)
T KOG3542|consen 568 EVFPGSKAAREG-LKRGDQILEVNGQNFENISAKKAEEILRN 608 (1283)
T ss_pred eecCCchHHHhh-hhhhhhhhhccccchhhhhHHHHHHHhcC
Confidence 478999999999 99999999999999999999999999975
No 97
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=95.67 E-value=0.0041 Score=52.91 Aligned_cols=25 Identities=40% Similarity=0.719 Sum_probs=23.8
Q ss_pred ccCCCChhhhcCCCCCCCEEEEECCe
Q psy1521 2 RAVPGGIAATDGRLLKGDQIMSVDGT 27 (175)
Q Consensus 2 ~v~~~~~A~~~G~L~~GD~Il~Vng~ 27 (175)
.|.++|||+++| |.+||+|++|||.
T Consensus 468 ~V~~~gPA~~AG-l~~Gd~ivai~G~ 492 (558)
T COG3975 468 FVFPGGPAYKAG-LSPGDKIVAINGI 492 (558)
T ss_pred ecCCCChhHhcc-CCCccEEEEEcCc
Confidence 478999999999 9999999999998
No 98
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=95.56 E-value=0.01 Score=42.37 Aligned_cols=31 Identities=35% Similarity=0.478 Sum_probs=22.9
Q ss_pred ccCCCChhhhcCCCCC-CCEEEEECCeeCCCCC
Q psy1521 2 RAVPGGIAATDGRLLK-GDQIMSVDGTDVRDKS 33 (175)
Q Consensus 2 ~v~~~~~A~~~G~L~~-GD~Il~Vng~~v~~~~ 33 (175)
+|.|+|||+++| |++ .|.|+.+++..+.+.+
T Consensus 49 ~V~p~SPA~~AG-L~p~~DyIig~~~~~l~~~~ 80 (138)
T PF04495_consen 49 RVAPNSPAAKAG-LEPFFDYIIGIDGGLLDDED 80 (138)
T ss_dssp EE-TTSHHHHTT---TTTEEEEEETTCE--STC
T ss_pred EecCCCHHHHCC-ccccccEEEEccceecCCHH
Confidence 588999999999 998 6999999998888654
No 99
>KOG0606|consensus
Probab=95.45 E-value=0.012 Score=54.09 Aligned_cols=40 Identities=30% Similarity=0.383 Sum_probs=38.0
Q ss_pred ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42 (175)
Q Consensus 2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~ 42 (175)
.|.+|+||..+| |+.||.|+.|||..+.+..|.++++++-
T Consensus 664 sv~egsPA~~ag-ls~~DlIthvnge~v~gl~H~ev~~Lll 703 (1205)
T KOG0606|consen 664 SVEEGSPAFEAG-LSAGDLITHVNGEPVHGLVHTEVMELLL 703 (1205)
T ss_pred eecCCCCccccC-CCccceeEeccCcccchhhHHHHHHHHH
Confidence 688999999999 9999999999999999999999999975
No 100
>KOG3532|consensus
Probab=95.38 E-value=0.038 Score=48.65 Aligned_cols=48 Identities=23% Similarity=0.309 Sum_probs=41.4
Q ss_pred CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK 94 (175)
Q Consensus 44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~ 94 (175)
.+-|-.|.++++|.++. |++||.+++|||.+++ +..++...++..-..
T Consensus 399 ~v~v~tv~~ns~a~k~~-~~~gdvlvai~~~pi~--s~~q~~~~~~s~~~~ 446 (1051)
T KOG3532|consen 399 AVKVCTVEDNSLADKAA-FKPGDVLVAINNVPIR--SERQATRFLQSTTGD 446 (1051)
T ss_pred EEEEEEecCCChhhHhc-CCCcceEEEecCccch--hHHHHHHHHHhcccc
Confidence 34577899999999998 9999999999999995 568999999876655
No 101
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.33 E-value=0.017 Score=47.32 Aligned_cols=31 Identities=39% Similarity=0.574 Sum_probs=28.6
Q ss_pred ccCCCChhhhcCCCCCCCEEEEECCeeCCCCC
Q psy1521 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKS 33 (175)
Q Consensus 2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~ 33 (175)
.+.|+|||+++| ++.||.|+++||.++.+..
T Consensus 276 ~v~~~spa~~ag-i~~Gdii~~vng~~v~~~~ 306 (347)
T COG0265 276 GVLPGSPAAKAG-IKAGDIITAVNGKPVASLS 306 (347)
T ss_pred ecCCCChHHHcC-CCCCCEEEEECCEEccCHH
Confidence 588999999999 9999999999999998754
No 102
>KOG3532|consensus
Probab=95.18 E-value=0.016 Score=50.83 Aligned_cols=49 Identities=14% Similarity=0.234 Sum_probs=37.4
Q ss_pred ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCH-HHHHHHhhCCeEEEEec
Q psy1521 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQ-EEVATIMKGGILVHDIY 51 (175)
Q Consensus 2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~-~~~~~~l~~gi~V~~v~ 51 (175)
.|.|+++|.++. |++||.+++|||++++.... ..+++.+.+.+|+..+.
T Consensus 404 tv~~ns~a~k~~-~~~gdvlvai~~~pi~s~~q~~~~~~s~~~~~~~l~~~ 453 (1051)
T KOG3532|consen 404 TVEDNSLADKAA-FKPGDVLVAINNVPIRSERQATRFLQSTTGDLTVLVER 453 (1051)
T ss_pred EecCCChhhHhc-CCCcceEEEecCccchhHHHHHHHHHhcccceEEEEee
Confidence 578999999999 99999999999999986533 23344455667765543
No 103
>KOG3129|consensus
Probab=94.95 E-value=0.036 Score=41.97 Aligned_cols=31 Identities=29% Similarity=0.432 Sum_probs=27.5
Q ss_pred ccCCCChhhhcCCCCCCCEEEEECCeeCCCCC
Q psy1521 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKS 33 (175)
Q Consensus 2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~ 33 (175)
.|.|+|||+.+| |+.||.|+++..+.--++.
T Consensus 145 sV~~~SPA~~aG-l~~gD~il~fGnV~sgn~~ 175 (231)
T KOG3129|consen 145 SVVPGSPADEAG-LCVGDEILKFGNVHSGNFL 175 (231)
T ss_pred ecCCCChhhhhC-cccCceEEEecccccccch
Confidence 588999999999 9999999999988766665
No 104
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=94.22 E-value=0.16 Score=39.43 Aligned_cols=45 Identities=13% Similarity=0.114 Sum_probs=31.8
Q ss_pred EEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521 47 VHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK 94 (175)
Q Consensus 47 V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~ 94 (175)
+.-..+++.-+..| ||.||..++||+.++++ .+++..+|+.....
T Consensus 211 ~~pgkd~slF~~sg-lq~GDIavaiNnldltd--p~~m~~llq~l~~m 255 (275)
T COG3031 211 FEPGKDGSLFYKSG-LQRGDIAVAINNLDLTD--PEDMFRLLQMLRNM 255 (275)
T ss_pred ecCCCCcchhhhhc-CCCcceEEEecCcccCC--HHHHHHHHHhhhcC
Confidence 33334456667778 99999999999999854 46666666654443
No 105
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=94.21 E-value=0.051 Score=43.14 Aligned_cols=35 Identities=14% Similarity=0.301 Sum_probs=26.5
Q ss_pred hhhhcCCCCCCCEEEEECCeeCCCCCH-HHHHHHhhC
Q psy1521 8 IAATDGRLLKGDQIMSVDGTDVRDKSQ-EEVATIMKG 43 (175)
Q Consensus 8 ~A~~~G~L~~GD~Il~Vng~~v~~~~~-~~~~~~l~~ 43 (175)
...+.| ||+||.+++|||.++.+..+ .++.+.|+.
T Consensus 219 lF~~~G-Lq~GDva~sING~dL~D~~qa~~l~~~L~~ 254 (276)
T PRK09681 219 LFDASG-FKEGDIAIALNQQDFTDPRAMIALMRQLPS 254 (276)
T ss_pred HHHHcC-CCCCCEEEEeCCeeCCCHHHHHHHHHHhcc
Confidence 457788 99999999999999987654 244455554
No 106
>KOG1320|consensus
Probab=93.89 E-value=0.041 Score=46.75 Aligned_cols=32 Identities=34% Similarity=0.668 Sum_probs=29.9
Q ss_pred ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCH
Q psy1521 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQ 34 (175)
Q Consensus 2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~ 34 (175)
+|.|++++...+ +..||+|++|||++|.|..|
T Consensus 404 ~Vlp~~~~~~~~-~~~g~~V~~vng~~V~n~~~ 435 (473)
T KOG1320|consen 404 QVLPGSINGGYG-LKPGDQVVKVNGKPVKNLKH 435 (473)
T ss_pred EeccCCCccccc-ccCCCEEEEECCEEeechHH
Confidence 688999999999 99999999999999999866
No 107
>KOG1738|consensus
Probab=93.82 E-value=0.058 Score=46.90 Aligned_cols=52 Identities=19% Similarity=0.293 Sum_probs=46.1
Q ss_pred CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCCC
Q psy1521 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKA 95 (175)
Q Consensus 44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~~ 95 (175)
..+|+.+.+++||+...+|..||.++.||+..+.++.+.-.+..|+.....+
T Consensus 226 ~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sgi 277 (638)
T KOG1738|consen 226 PHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAGI 277 (638)
T ss_pred ceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCcccc
Confidence 4568889999999999999999999999999999999999898888766663
No 108
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=92.82 E-value=0.12 Score=33.91 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=16.6
Q ss_pred ChhhhcC-CCCCCCEEEEECCeeCCCC
Q psy1521 7 GIAATDG-RLLKGDQIMSVDGTDVRDK 32 (175)
Q Consensus 7 ~~A~~~G-~L~~GD~Il~Vng~~v~~~ 32 (175)
||.++-| .++.||.|++|||+++..-
T Consensus 31 sPL~~pGv~v~~GD~I~aInG~~v~~~ 57 (88)
T PF14685_consen 31 SPLAQPGVDVREGDYILAINGQPVTAD 57 (88)
T ss_dssp -GGGGGS----TT-EEEEETTEE-BTT
T ss_pred CCccCCCCCCCCCCEEEEECCEECCCC
Confidence 6666666 2569999999999999854
No 109
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=91.01 E-value=0.35 Score=37.56 Aligned_cols=35 Identities=23% Similarity=0.533 Sum_probs=27.8
Q ss_pred CCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521 5 PGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42 (175)
Q Consensus 5 ~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~ 42 (175)
+++..++.| ||.||..+++|+.++.+ ++++..+++
T Consensus 216 d~slF~~sg-lq~GDIavaiNnldltd--p~~m~~llq 250 (275)
T COG3031 216 DGSLFYKSG-LQRGDIAVAINNLDLTD--PEDMFRLLQ 250 (275)
T ss_pred Ccchhhhhc-CCCcceEEEecCcccCC--HHHHHHHHH
Confidence 466778888 99999999999998874 466666654
No 110
>KOG1738|consensus
Probab=89.44 E-value=0.33 Score=42.42 Aligned_cols=42 Identities=14% Similarity=0.276 Sum_probs=38.4
Q ss_pred ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43 (175)
Q Consensus 2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~ 43 (175)
++.+++||....++.+||.++.||+..|..|.+.-++..++.
T Consensus 231 ~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~ 272 (638)
T KOG1738|consen 231 KIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRE 272 (638)
T ss_pred ccccCChHHHhhcccCccceeeecccccccchhHhHHhhccc
Confidence 577899999999999999999999999999999988888763
No 111
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=89.32 E-value=0.89 Score=37.37 Aligned_cols=42 Identities=29% Similarity=0.408 Sum_probs=33.9
Q ss_pred EEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcC
Q psy1521 47 VHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT 91 (175)
Q Consensus 47 V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~ 91 (175)
+..+..+++|+.+| |++||+++++|+..+.+ .++....+...
T Consensus 133 ~~~v~~~s~a~~a~-l~~Gd~iv~~~~~~i~~--~~~~~~~~~~~ 174 (375)
T COG0750 133 VGEVAPKSAAALAG-LRPGDRIVAVDGEKVAS--WDDVRRLLVAA 174 (375)
T ss_pred eeecCCCCHHHHcC-CCCCCEEEeECCEEccC--HHHHHHHHHhc
Confidence 44688999999999 99999999999999965 46655555443
No 112
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=88.17 E-value=0.51 Score=38.79 Aligned_cols=31 Identities=39% Similarity=0.572 Sum_probs=28.6
Q ss_pred cCCCChhhhcCCCCCCCEEEEECCeeCCCCCH
Q psy1521 3 AVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQ 34 (175)
Q Consensus 3 v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~ 34 (175)
+.++++|+.+| ++.||+++++|+.++..+..
T Consensus 136 v~~~s~a~~a~-l~~Gd~iv~~~~~~i~~~~~ 166 (375)
T COG0750 136 VAPKSAAALAG-LRPGDRIVAVDGEKVASWDD 166 (375)
T ss_pred cCCCCHHHHcC-CCCCCEEEeECCEEccCHHH
Confidence 67889999999 99999999999999998865
No 113
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=86.87 E-value=1 Score=36.50 Aligned_cols=37 Identities=24% Similarity=0.456 Sum_probs=29.1
Q ss_pred ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42 (175)
Q Consensus 2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~ 42 (175)
.+..+++| .|+|..||.|++|||.++.+ .++.+..++
T Consensus 136 ~v~~~~~~--~gkl~~gD~i~avdg~~f~s--~~e~i~~v~ 172 (342)
T COG3480 136 SVIDNSPF--KGKLEAGDTIIAVDGEPFTS--SDELIDYVS 172 (342)
T ss_pred EccCCcch--hceeccCCeEEeeCCeecCC--HHHHHHHHh
Confidence 35567777 78899999999999999875 466666654
No 114
>KOG3938|consensus
Probab=85.53 E-value=0.26 Score=38.81 Aligned_cols=42 Identities=26% Similarity=0.417 Sum_probs=37.2
Q ss_pred ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43 (175)
Q Consensus 2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~ 43 (175)
.|-+||.-.+--.++.||.|=+|||.++..+.|-++.++|+.
T Consensus 155 rIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKe 196 (334)
T KOG3938|consen 155 RIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKE 196 (334)
T ss_pred eecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHh
Confidence 356788888877799999999999999999999999999874
No 115
>PF07591 PT-HINT: Pretoxin HINT domain; InterPro: IPR011451 This entry represents a cluster of homologous proteins identified in Leptospira interrogans. One member (Q8EZX6 from SWISSPROT) has been predicted to be a phenazine biosynthesis family protein.; PDB: 2JNQ_A 2JMZ_A.
Probab=84.65 E-value=0.54 Score=33.07 Aligned_cols=57 Identities=23% Similarity=0.335 Sum_probs=12.3
Q ss_pred CCCCCEEEEECCeeCC-------CCCHHHHHHHhh-------------CCeEEEEecCCCcccccCCcCCCCEEEEECCe
Q psy1521 15 LLKGDQIMSVDGTDVR-------DKSQEEVATIMK-------------GGILVHDIYPEGAAAKDARLKFGDQILELTGE 74 (175)
Q Consensus 15 L~~GD~Il~Vng~~v~-------~~~~~~~~~~l~-------------~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~ 74 (175)
++.||++++-|...-. ..-..+..++++ -++|+.. ++ .-+++.|++||+|+..+|.
T Consensus 14 I~~GD~Vls~d~~tg~~~~~~V~~~f~~~~~~l~~i~~~~~~i~~T~~HPF~~~~---~g-Wv~A~~L~~GD~L~~~~G~ 89 (130)
T PF07591_consen 14 IKVGDRVLSYDEETGETEYKPVTATFVRETDELVDITLEDETITTTPNHPFWVEG---KG-WVEAEDLKVGDRLLTADGS 89 (130)
T ss_dssp --------------------------------------------------------------EEGGG--TTSEEEEE-SS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccch---Hh-hhhHhhCCCCCEEEcCCCC
Confidence 8999999999865321 111111111111 1444431 23 3344569999999999996
Q ss_pred e
Q psy1521 75 D 75 (175)
Q Consensus 75 ~ 75 (175)
.
T Consensus 90 ~ 90 (130)
T PF07591_consen 90 W 90 (130)
T ss_dssp E
T ss_pred E
Confidence 5
No 116
>PF12812 PDZ_1: PDZ-like domain
Probab=83.41 E-value=1.3 Score=28.29 Aligned_cols=27 Identities=37% Similarity=0.479 Sum_probs=21.3
Q ss_pred CChhhhcCCCCCCCEEEEECCeeCCCCC
Q psy1521 6 GGIAATDGRLLKGDQIMSVDGTDVRDKS 33 (175)
Q Consensus 6 ~~~A~~~G~L~~GD~Il~Vng~~v~~~~ 33 (175)
|+++. ++.+..|-.|.+|||+++.++.
T Consensus 40 g~~~~-~~~i~~g~iI~~Vn~kpt~~Ld 66 (78)
T PF12812_consen 40 GSLAF-AGGISKGFIITSVNGKPTPDLD 66 (78)
T ss_pred CChhh-hCCCCCCeEEEeECCcCCcCHH
Confidence 44444 4449999999999999998874
No 117
>KOG4407|consensus
Probab=69.78 E-value=3 Score=39.91 Aligned_cols=41 Identities=17% Similarity=0.331 Sum_probs=37.4
Q ss_pred ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43 (175)
Q Consensus 2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~ 43 (175)
.|.++++|..+- ||.||+++.||..++..+-..+++.+++.
T Consensus 149 eV~~n~~~~~a~-LQ~~~~V~~v~~q~~A~i~~s~~~S~~~q 189 (1973)
T KOG4407|consen 149 EVQANGPAHYAN-LQTGDRVLMVNNQPIAGIAYSTIVSMIKQ 189 (1973)
T ss_pred hhccCChhHHHh-hhccceeEEeecCcccchhhhhhhhhhcc
Confidence 478999999998 99999999999999999988999888874
No 118
>KOG2921|consensus
Probab=68.03 E-value=13 Score=31.24 Aligned_cols=45 Identities=20% Similarity=0.272 Sum_probs=34.5
Q ss_pred CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHc
Q psy1521 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRL 90 (175)
Q Consensus 44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~ 90 (175)
++.|..|...||+.--..|.+||.|.++||.++.+. ++=.+.++.
T Consensus 221 gV~Vtev~~~Spl~gprGL~vgdvitsldgcpV~~v--~dW~ecl~t 265 (484)
T KOG2921|consen 221 GVTVTEVPSVSPLFGPRGLSVGDVITSLDGCPVHKV--SDWLECLAT 265 (484)
T ss_pred eEEEEeccccCCCcCcccCCccceEEecCCcccCCH--HHHHHHHHh
Confidence 788999999999765533999999999999999764 333444433
No 119
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=64.78 E-value=8.1 Score=28.89 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=25.5
Q ss_pred CCeEEEEecCCCcccccCCcCCCCEEEEE
Q psy1521 43 GGILVHDIYPEGAAAKDARLKFGDQILEL 71 (175)
Q Consensus 43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~V 71 (175)
+.+.|..|..||+|+++| +..+++|.+|
T Consensus 122 ~~~~Vd~v~fgS~A~~~g-~d~d~~I~~v 149 (183)
T PF11874_consen 122 GKVIVDEVEFGSPAEKAG-IDFDWEITEV 149 (183)
T ss_pred CEEEEEecCCCCHHHHcC-CCCCcEEEEE
Confidence 357899999999999999 9999999887
No 120
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=64.60 E-value=28 Score=20.81 Aligned_cols=50 Identities=18% Similarity=0.208 Sum_probs=35.2
Q ss_pred EEEECCeeCCC---CCHHHHHHHhhCCeEEEEecCCCcccccCCcCCCCEEEEE
Q psy1521 21 IMSVDGTDVRD---KSQEEVATIMKGGILVHDIYPEGAAAKDARLKFGDQILEL 71 (175)
Q Consensus 21 Il~Vng~~v~~---~~~~~~~~~l~~gi~V~~v~~gg~A~~~G~L~~GD~Il~V 71 (175)
.+.|||..+.. .+-.+..+.++...=|. |.-|-|...+-.|+.||+|+-|
T Consensus 2 ~I~vN~k~~~~~~~~tl~~lr~~~k~~~DI~-I~NGF~~~~d~~L~e~D~v~~I 54 (57)
T PF14453_consen 2 KIKVNEKEIETEENTTLFELRKESKPDADIV-ILNGFPTKEDIELKEGDEVFLI 54 (57)
T ss_pred EEEECCEEEEcCCCcCHHHHHHhhCCCCCEE-EEcCcccCCccccCCCCEEEEE
Confidence 46899988764 23456666666543333 6678888888889999999866
No 121
>COG5233 GRH1 Peripheral Golgi membrane protein [Intracellular trafficking and secretion]
Probab=55.32 E-value=7.2 Score=31.75 Aligned_cols=30 Identities=33% Similarity=0.554 Sum_probs=26.7
Q ss_pred EEEecCCCcccccCCcCCCCEEEEECCeecC
Q psy1521 47 VHDIYPEGAAAKDARLKFGDQILELTGEDFR 77 (175)
Q Consensus 47 V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~ 77 (175)
+.+|.+.++|+++| .-.||.|+-+|+-++.
T Consensus 67 ~lrv~~~~~~e~~~-~~~~dyilg~n~Dp~~ 96 (417)
T COG5233 67 VLRVNPESPAEKAG-MVVGDYILGINEDPLR 96 (417)
T ss_pred heeccccChhHhhc-cccceeEEeecCCcHH
Confidence 66888999999999 9999999999986654
No 122
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=55.12 E-value=30 Score=24.61 Aligned_cols=37 Identities=35% Similarity=0.570 Sum_probs=25.6
Q ss_pred CCCCCEEEEECCeeCCCCCHHHHHHHhhCCeEEEEecCCCcccccCCcCCCCEEEEEC
Q psy1521 15 LLKGDQIMSVDGTDVRDKSQEEVATIMKGGILVHDIYPEGAAAKDARLKFGDQILELT 72 (175)
Q Consensus 15 L~~GD~Il~Vng~~v~~~~~~~~~~~l~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VN 72 (175)
|+.||+++.+ +++ |..|.-| |+-..+++.||.+-+|.
T Consensus 87 lkkGd~ll~i---PvE-------------GYvVtpI-----aDvG~RvrkGd~~AAvt 123 (161)
T COG4072 87 LKKGDELLLI---PVE-------------GYVVTPI-----ADVGNRVRKGDPFAAVT 123 (161)
T ss_pred ecCCCEEEEE---ecC-------------cEEEEEe-----ecccchhcCCCceeEEE
Confidence 7888888876 443 6566655 34446688899888874
No 123
>COG3127 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=43.46 E-value=19 Score=32.75 Aligned_cols=57 Identities=23% Similarity=0.404 Sum_probs=38.9
Q ss_pred CEEEEECCeeCCCCC-HHHHHHHhhC------------------C----------eEEEEecCCCcccccCCcCCCCEEE
Q psy1521 19 DQIMSVDGTDVRDKS-QEEVATIMKG------------------G----------ILVHDIYPEGAAAKDARLKFGDQIL 69 (175)
Q Consensus 19 D~Il~Vng~~v~~~~-~~~~~~~l~~------------------g----------i~V~~v~~gg~A~~~G~L~~GD~Il 69 (175)
-||.+|||+++...+ +.+....++. | .-|+ .+.+.|..-| ||.||++.
T Consensus 542 GRl~aiNGq~v~~~~~~~~~~~al~rd~~LT~~~~~P~~n~l~aG~Ww~~~~~g~P~VS--~e~~~A~~Lg-lKLGDtvT 618 (829)
T COG3127 542 GRLTAINGQPVTEMSVPPSARWALRRDLNLTWAEKRPENNPLTAGRWWPKNDSGEPEVS--MEEGEAKRLG-LKLGDTVT 618 (829)
T ss_pred eeEEEecCccCccccCCchHHHHHhcccCcchhhcCCCCCccccccCCCCCCCCCCccc--hhHhHHHHhC-CccCCEEE
Confidence 489999999998754 3445555542 0 1122 3456788888 99999885
Q ss_pred -EECCeecCC
Q psy1521 70 -ELTGEDFRN 78 (175)
Q Consensus 70 -~VNG~~l~~ 78 (175)
.|+|++++-
T Consensus 619 f~v~gq~i~A 628 (829)
T COG3127 619 FMVLGQNITA 628 (829)
T ss_pred EEeccceEEe
Confidence 489988753
No 124
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=41.93 E-value=34 Score=25.55 Aligned_cols=36 Identities=22% Similarity=0.109 Sum_probs=33.0
Q ss_pred cCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521 59 DARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK 94 (175)
Q Consensus 59 ~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~ 94 (175)
.|.+.+||+++-|+..--.+-|..++.+++++.+..
T Consensus 116 ~g~~~~g~rVlIVDDVitTGgS~~~~i~~l~~~Ga~ 151 (187)
T PRK13810 116 VGDLKPEDRIVMLEDVTTSGGSVREAIEVVREAGAY 151 (187)
T ss_pred EccCCCcCEEEEEEeccCCChHHHHHHHHHHHCCCE
Confidence 466899999999999999999999999999998876
No 125
>TIGR01164 rplP_bact ribosomal protein L16, bacterial/organelle. This model describes bacterial and organellar ribosomal protein L16. The homologous protein of the eukaryotic cytosol is designated L10
Probab=40.91 E-value=27 Score=24.37 Aligned_cols=37 Identities=24% Similarity=0.310 Sum_probs=27.1
Q ss_pred CCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521 53 EGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK 94 (175)
Q Consensus 53 gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~ 94 (175)
|.+..-+-++++|+.|++|.+ .+.+.|..+|+.....
T Consensus 87 G~~~~~varV~~G~ilfEi~~-----~~~~~a~~al~~a~~K 123 (126)
T TIGR01164 87 GNPEYWVAVVKPGKILFEIAG-----VPEEVAREAFRLAASK 123 (126)
T ss_pred CCCCEEEEEECCCCEEEEEeC-----CCHHHHHHHHHHHHhc
Confidence 344444445899999999988 4568888888876554
No 126
>PRK09203 rplP 50S ribosomal protein L16; Reviewed
Probab=40.64 E-value=31 Score=24.53 Aligned_cols=37 Identities=30% Similarity=0.341 Sum_probs=28.3
Q ss_pred CCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521 53 EGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK 94 (175)
Q Consensus 53 gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~ 94 (175)
|.+..-+-++++|+.|+++.| .+.+.|..+|+.+...
T Consensus 88 G~~~~~varVk~G~iifEi~~-----~~~~~a~~al~~a~~K 124 (138)
T PRK09203 88 GSPEYWVAVVKPGRILFEIAG-----VSEELAREALRLAAAK 124 (138)
T ss_pred CCCcEEEEEECCCCEEEEEeC-----CCHHHHHHHHHHHhcc
Confidence 344444446899999999988 3568899999988766
No 127
>cd01433 Ribosomal_L16_L10e Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts. Large subunits that lack L16 are defective in peptidyl transferase activity, peptidyl-tRNA hydrolysis activity, association with the 30S subunit, binding of aminoacyl-tRNA and interaction with antibiotics. L16 is required for the function of elongation factor P (EF-P), a protein involved in peptide bond synthesis through the stimulation of peptidyl transferase activity by the ribosome. Mutations in L16 and the adjoining bases of 23S rRNA confer antibiotic resistance in bacteria, suggesting a role for L16 in the formation of the antibiotic binding site. The GTPase RbgA (YlqF) is essential for the assembly of the large subunit, and it is believed to regulate the incorporation of L16. L10e is the archaeal and eukaryotic cytosolic homolog of bacterial L16. L16 and L10e exhibit structural differences at the N-terminus.
Probab=39.53 E-value=31 Score=23.36 Aligned_cols=38 Identities=26% Similarity=0.226 Sum_probs=28.8
Q ss_pred CCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521 53 EGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK 94 (175)
Q Consensus 53 gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~ 94 (175)
|.+....-++++|+.|+++.|.+- .+.+...|+.....
T Consensus 67 G~~~~~~a~v~~G~iifEi~~~~~----~~~~~~alk~a~~K 104 (112)
T cd01433 67 GKPEGWVARVKPGQILFEVRGVPE----EEVAKEALRRAAKK 104 (112)
T ss_pred CCccEEEEEECCCCEEEEEeCcCc----HHHHHHHHHHhhcc
Confidence 444455556999999999998764 67888888877666
No 128
>PF01455 HupF_HypC: HupF/HypC family; InterPro: IPR001109 The large subunit of [NiFe]-hydrogenase, as well as other nickel metalloenzymes, is synthesised as a precursor devoid of the metalloenzyme active site. This precursor then undergoes a complex post-translational maturation process that requires a number of accessory proteins. The hydrogenase expression/formation proteins (HupF/HypC) form a family of small proteins that are hydrogenase precursor-specific chaperones required for this maturation process []. They are believed to keep the hydrogenase precursor in a conformation accessible for metal incorporation [, ].; PDB: 3D3R_A 2Z1C_C 2OT2_A.
Probab=39.53 E-value=38 Score=20.89 Aligned_cols=28 Identities=29% Similarity=0.389 Sum_probs=22.9
Q ss_pred cCCCCEEEEECCeecCCCCHHHHHHHHH
Q psy1521 62 LKFGDQILELTGEDFRNITHAKAMAHLR 89 (175)
Q Consensus 62 L~~GD~Il~VNG~~l~~~~~~~a~~~lk 89 (175)
.++||.++-=.|.-++-++.++|.+.++
T Consensus 38 v~~Gd~VLVHaG~Ai~~ideeeA~e~l~ 65 (68)
T PF01455_consen 38 VKVGDYVLVHAGFAIEKIDEEEAEETLD 65 (68)
T ss_dssp B-TT-EEEEETTEEEEEE-HHHHHHHHH
T ss_pred CCCCCEEEEecChhheeCCHHHHHHHHH
Confidence 8899999999999999999999988775
No 129
>KOG2921|consensus
Probab=39.07 E-value=19 Score=30.35 Aligned_cols=21 Identities=48% Similarity=0.635 Sum_probs=18.7
Q ss_pred CCCCCCCEEEEECCeeCCCCCH
Q psy1521 13 GRLLKGDQIMSVDGTDVRDKSQ 34 (175)
Q Consensus 13 G~L~~GD~Il~Vng~~v~~~~~ 34 (175)
| |.+||.|.++||.+|.+.+.
T Consensus 238 G-L~vgdvitsldgcpV~~v~d 258 (484)
T KOG2921|consen 238 G-LSVGDVITSLDGCPVHKVSD 258 (484)
T ss_pred c-CCccceEEecCCcccCCHHH
Confidence 5 99999999999999987653
No 130
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=38.69 E-value=8.6 Score=31.58 Aligned_cols=67 Identities=25% Similarity=0.430 Sum_probs=37.9
Q ss_pred CCCChhhhcCCCCCCCEEEEECCeeCCCC-----------C---------HHHHHHHhhCCeEEEEecCCCcccccCCcC
Q psy1521 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDK-----------S---------QEEVATIMKGGILVHDIYPEGAAAKDARLK 63 (175)
Q Consensus 4 ~~~~~A~~~G~L~~GD~Il~Vng~~v~~~-----------~---------~~~~~~~l~~gi~V~~v~~gg~A~~~G~L~ 63 (175)
.||+-...-.-|+.||+++.||-.--... + -....-+|++.-.|.-+.|+|-+-.--.|+
T Consensus 238 ~pgg~T~YLsEL~sG~eVlvVd~~G~tR~~~VGRvKIE~RPL~lIeAe~~g~~~~viLQnaetIrlv~~dG~~vsVt~Lk 317 (344)
T PRK02290 238 VPGDKTRYLSELRSGDEVLVVDADGNTREAIVGRVKIEKRPLLLIEAEYGGKRIRTILQNAETIRLVTPDGKPVSVVDLK 317 (344)
T ss_pred cCCCcchhhHhhcCCCEEEEEeCCCCEEEEEeeEEEEeeccEEEEEEEeCCeEEEEEEecCcEEEEECCCCCEeeeeecC
Confidence 35555555455999999999985310000 0 000011123455677777877543333499
Q ss_pred CCCEEEE
Q psy1521 64 FGDQILE 70 (175)
Q Consensus 64 ~GD~Il~ 70 (175)
+||+||-
T Consensus 318 ~GD~VL~ 324 (344)
T PRK02290 318 PGDEVLG 324 (344)
T ss_pred CCCEEEE
Confidence 9999875
No 131
>PF14239 RRXRR: RRXRR protein
Probab=35.13 E-value=1.9e+02 Score=21.53 Aligned_cols=69 Identities=19% Similarity=0.269 Sum_probs=41.6
Q ss_pred EEEECCeecCCCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCcccceeeeeeeeeecccCCCCCCCCCceEEEEEE
Q psy1521 68 ILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVPSEPNANATTGEKTTFYFHFQVKLVVLRDTVTKEDDLLEFVDVELT 147 (175)
Q Consensus 68 Il~VNG~~l~~~~~~~a~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~v~r~~~~~~~~~~~~~~v~l~ 147 (175)
++..||++|.-+....|..+|++....+- ...|+.+.|..... ....++..+-+.
T Consensus 3 Vld~~gkPLmP~~p~rAR~LLk~GkA~V~--------------------r~~PFtI~L~~~~~-----~~~~qpi~lgiD 57 (176)
T PF14239_consen 3 VLDKNGKPLMPCHPARARKLLKQGKAKVV--------------------RRYPFTIQLKYEPS-----GSYTQPIRLGID 57 (176)
T ss_pred EECCCCCcCCCCCHHHHHHHHHCCCEEEE--------------------ecCCeEEEEEeccC-----CCcccCEEEEEC
Confidence 56779999999988899999987655421 01111234433211 122345666654
Q ss_pred eCCCCCcCEEEEcCc
Q psy1521 148 KKAGKGFGLSLVGRK 162 (175)
Q Consensus 148 k~~~~~lGfsi~gg~ 162 (175)
.++.-.||+++...
T Consensus 58 -pGsk~tGiav~~~~ 71 (176)
T PF14239_consen 58 -PGSKTTGIAVVSEK 71 (176)
T ss_pred -CCCCeEEEEEEeCC
Confidence 44556799998765
No 132
>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]
Probab=34.41 E-value=31 Score=28.27 Aligned_cols=30 Identities=27% Similarity=0.375 Sum_probs=21.5
Q ss_pred ccccCCcCCCCEEEEECCeecCCCCHHHHHHH
Q psy1521 56 AAKDARLKFGDQILELTGEDFRNITHAKAMAH 87 (175)
Q Consensus 56 A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~ 87 (175)
++.-|-|++||.+++|.|.+-. |.+|++-+
T Consensus 98 ~aLfg~LRpgDell~i~G~PYD--TLeevIG~ 127 (416)
T COG4100 98 CALFGILRPGDELLYITGSPYD--TLEEVIGL 127 (416)
T ss_pred HHHHhccCCCCeEEEecCCcch--hHHHHhcc
Confidence 3444779999999999998763 34555433
No 133
>PRK07440 hypothetical protein; Provisional
Probab=32.42 E-value=92 Score=19.12 Aligned_cols=52 Identities=13% Similarity=0.142 Sum_probs=29.8
Q ss_pred CEEEEECCeeCCC---CCHHHHHHHhh---CCeEEE---EecCCCcccccCCcCCCCEEEEE
Q psy1521 19 DQIMSVDGTDVRD---KSQEEVATIMK---GGILVH---DIYPEGAAAKDARLKFGDQILEL 71 (175)
Q Consensus 19 D~Il~Vng~~v~~---~~~~~~~~~l~---~gi~V~---~v~~gg~A~~~G~L~~GD~Il~V 71 (175)
...+.|||....- .+-.+.+..+. .++.|. .+.+.+-.+..- |+.||+|.=|
T Consensus 4 ~m~i~vNG~~~~~~~~~tl~~lL~~l~~~~~~vav~~N~~iv~r~~w~~~~-L~~gD~IEIv 64 (70)
T PRK07440 4 PITLQVNGETRTCSSGTSLPDLLQQLGFNPRLVAVEYNGEILHRQFWEQTQ-VQPGDRLEIV 64 (70)
T ss_pred ceEEEECCEEEEcCCCCCHHHHHHHcCCCCCeEEEEECCEEeCHHHcCcee-cCCCCEEEEE
Confidence 3568899986543 34455555442 244433 455554444444 8999987544
No 134
>COG5233 GRH1 Peripheral Golgi membrane protein [Intracellular trafficking and secretion]
Probab=32.13 E-value=31 Score=28.28 Aligned_cols=28 Identities=29% Similarity=0.548 Sum_probs=24.7
Q ss_pred ccCCCChhhhcCCCCCCCEEEEECCeeCC
Q psy1521 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVR 30 (175)
Q Consensus 2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~ 30 (175)
+|.|-++|.++| +-.||.|+-+|+-++.
T Consensus 69 rv~~~~~~e~~~-~~~~dyilg~n~Dp~~ 96 (417)
T COG5233 69 RVNPESPAEKAG-MVVGDYILGINEDPLR 96 (417)
T ss_pred eccccChhHhhc-cccceeEEeecCCcHH
Confidence 578999999999 9999999999987653
No 135
>PRK06437 hypothetical protein; Provisional
Probab=31.62 E-value=1.2e+02 Score=18.33 Aligned_cols=51 Identities=16% Similarity=0.253 Sum_probs=25.1
Q ss_pred CEEEEECC-----eeCC-CCCHHHHHHHhh---CCeEEEEecCCCcccccCCcCCCCEEEEE
Q psy1521 19 DQIMSVDG-----TDVR-DKSQEEVATIMK---GGILVHDIYPEGAAAKDARLKFGDQILEL 71 (175)
Q Consensus 19 D~Il~Vng-----~~v~-~~~~~~~~~~l~---~gi~V~~v~~gg~A~~~G~L~~GD~Il~V 71 (175)
|.-+.||| ..+. +.+-.+.++.|. ..+.|. .-+-....+-.|+.||+|--+
T Consensus 2 ~~~~~v~g~~~~~~~i~~~~tv~dLL~~Lgi~~~~vaV~--vNg~iv~~~~~L~dgD~Veiv 61 (67)
T PRK06437 2 IAMIRVKGHINKTIEIDHELTVNDIIKDLGLDEEEYVVI--VNGSPVLEDHNVKKEDDVLIL 61 (67)
T ss_pred cceEEecCCcceEEEcCCCCcHHHHHHHcCCCCccEEEE--ECCEECCCceEcCCCCEEEEE
Confidence 34567888 4453 345555555442 233222 222222234448888876543
No 136
>PRK03760 hypothetical protein; Provisional
Probab=30.63 E-value=30 Score=23.78 Aligned_cols=25 Identities=16% Similarity=0.090 Sum_probs=17.9
Q ss_pred CCeEEEEecCCCcccccCCcCCCCEEE
Q psy1521 43 GGILVHDIYPEGAAAKDARLKFGDQIL 69 (175)
Q Consensus 43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il 69 (175)
...+|-++. .|.+++.| +++||+|.
T Consensus 89 ~a~~VLEl~-aG~~~~~g-i~~Gd~v~ 113 (117)
T PRK03760 89 PARYIIEGP-VGKIRVLK-VEVGDEIE 113 (117)
T ss_pred cceEEEEeC-CChHHHcC-CCCCCEEE
Confidence 345777774 45666668 99999984
No 137
>KOG0792|consensus
Probab=30.19 E-value=25 Score=33.22 Aligned_cols=43 Identities=28% Similarity=0.473 Sum_probs=37.2
Q ss_pred CCCccccc-CCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521 52 PEGAAAKD-ARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK 94 (175)
Q Consensus 52 ~gg~A~~~-G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~ 94 (175)
|+++|+.. =++..||.++.|||.......|+..+.+++++...
T Consensus 757 p~s~~d~~~P~~~e~dq~~~ingr~~~~~~~~~~vs~irs~r~~ 800 (1144)
T KOG0792|consen 757 PESTADDCTPRLNEGDQVTSINGRDVSESEHDQVVSLIRSPREN 800 (1144)
T ss_pred CCCCccccccCCCcccceeeecccccccccccchHHHHhhhhhc
Confidence 88888665 35888999999999999999999999999887764
No 138
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=29.97 E-value=84 Score=18.66 Aligned_cols=48 Identities=19% Similarity=0.261 Sum_probs=24.5
Q ss_pred EEECCeeCC---CCCHHHHHHHhh---CCeEEE---EecCCCcccccCCcCCCCEEEE
Q psy1521 22 MSVDGTDVR---DKSQEEVATIMK---GGILVH---DIYPEGAAAKDARLKFGDQILE 70 (175)
Q Consensus 22 l~Vng~~v~---~~~~~~~~~~l~---~gi~V~---~v~~gg~A~~~G~L~~GD~Il~ 70 (175)
+.|||.... +.+-.+++..+. ..+.|. .+.+..-.... .|+.||+|--
T Consensus 3 i~vNG~~~~~~~~~tl~~lL~~l~~~~~~vav~vNg~iv~r~~~~~~-~l~~gD~vei 59 (66)
T PRK05659 3 IQLNGEPRELPDGESVAALLAREGLAGRRVAVEVNGEIVPRSQHAST-ALREGDVVEI 59 (66)
T ss_pred EEECCeEEEcCCCCCHHHHHHhcCCCCCeEEEEECCeEeCHHHcCcc-cCCCCCEEEE
Confidence 578988653 244556665543 222222 12222323333 3888888653
No 139
>TIGR00223 panD L-aspartate-alpha-decarboxylase. Members of this family are aspartate 1-decarboxylase, the enzyme that makes beta-alanine and C02 from aspartate. Beta-alanine is then used to make the vitamin pantothenate, from which coenzyme A is made. Aspartate 1-decarboxylase is synthesized as a proenzyme, then cleaved to an alpha (C-terminal) and beta (N-terminal) subunit with a pyruvoyl group.
Probab=29.91 E-value=95 Score=21.74 Aligned_cols=58 Identities=21% Similarity=0.232 Sum_probs=32.5
Q ss_pred hhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhCCeEEEEecCCCcccccCCcCCCCEEEEECC
Q psy1521 9 AATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGGILVHDIYPEGAAAKDARLKFGDQILELTG 73 (175)
Q Consensus 9 A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG 73 (175)
-+.+| +.++.++.-+|=.+=..++. .+ +.+.-=-..+.-+|+|++- .++||+|+-..=
T Consensus 33 m~aag-i~p~E~V~V~Nv~NG~Rf~T-Yv---I~G~~GSg~I~lNGAAArl--~~~GD~VII~sy 90 (126)
T TIGR00223 33 LDAAG-ILENEKVDIVNVNNGKRFST-YA---IAGKRGSRIICVNGAAARC--VSVGDIVIIASY 90 (126)
T ss_pred HHhcC-CCCCCEEEEEECCCCcEEEE-EE---EEcCCCCCEEEeCCHHHhc--CCCCCEEEEEEC
Confidence 34567 88998887776443322210 00 0000001134557888885 799999887654
No 140
>COG0197 RplP Ribosomal protein L16/L10E [Translation, ribosomal structure and biogenesis]
Probab=29.89 E-value=53 Score=23.65 Aligned_cols=37 Identities=30% Similarity=0.319 Sum_probs=27.2
Q ss_pred CCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521 53 EGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK 94 (175)
Q Consensus 53 gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~ 94 (175)
|.|-.-+-++++|..|++|.|.+ .+.|.++|+.+..+
T Consensus 91 G~pegwaArVkpG~vlfei~g~~-----e~~A~EAlr~Aa~K 127 (146)
T COG0197 91 GKPEGWAARVKPGRVLFEIAGVP-----EELAREALRRAAAK 127 (146)
T ss_pred CCccEEEEEecCCcEEEEEecCc-----HHHHHHHHHHHhhc
Confidence 33433344599999999999865 34589999988777
No 141
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=29.41 E-value=42 Score=28.36 Aligned_cols=31 Identities=26% Similarity=0.333 Sum_probs=27.3
Q ss_pred ccCCCChhhhcCCCCCCCEEEEEC-CeeCCCCC
Q psy1521 2 RAVPGGIAATDGRLLKGDQIMSVD-GTDVRDKS 33 (175)
Q Consensus 2 ~v~~~~~A~~~G~L~~GD~Il~Vn-g~~v~~~~ 33 (175)
++.+++.++.+| +..||.++.|| +....+..
T Consensus 7 ~v~~~~~~d~~G-fe~~~~l~~Vn~~~~~~~c~ 38 (414)
T COG1625 7 KVGGISGADCDG-FEEGDYLLKVNPGFGCKDCI 38 (414)
T ss_pred eccCCCcccccC-ccccceeeecCCCCCCCcCC
Confidence 678999999999 99999999999 87776654
No 142
>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which requires a pyruvoyl group for its activity. The pyruvoyl cofactor is covalently bound to the enzyme. The protein is synthesized as a proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an alpha chain (C-terminal fragment) and beta chain (N-terminal fragment), and the pyruvoyl group. Beta-alanine is required for the biosynthesis of pantothenate, in which the enzyme plays a critical regulatory role. The active site of the tetrameric enzyme is located at the interface of two subunits, with a Lysine and a Histidine from the beta chain of one subunit forming the active site with residues from the alpha chain of the adjacent subunit. This alignment
Probab=29.04 E-value=1e+02 Score=21.10 Aligned_cols=57 Identities=21% Similarity=0.209 Sum_probs=31.0
Q ss_pred hhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhCCeEEEEecCCCcccccCCcCCCCEEEEECC
Q psy1521 10 ATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGGILVHDIYPEGAAAKDARLKFGDQILELTG 73 (175)
Q Consensus 10 ~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG 73 (175)
+.+| +.++.+|.-+|=.+=..++. .+ +.+.-=-..|.-+|+|++- .++||+|+-..=
T Consensus 33 ~aag-i~~~E~V~I~Nv~NG~Rf~T-Yv---I~g~~gSg~I~lNGAAAr~--~~~GD~vII~sy 89 (111)
T cd06919 33 EAAG-ILPYEKVLVVNVNNGARFET-YV---IPGERGSGVICLNGAAARL--GQPGDRVIIMAY 89 (111)
T ss_pred HhcC-CCCCCEEEEEECCCCcEEEE-EE---EEcCCCCCEEEeCCHHHhc--CCCCCEEEEEEC
Confidence 4566 88888887775433222210 00 0000001234457888885 789999876643
No 143
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=28.90 E-value=69 Score=23.59 Aligned_cols=37 Identities=22% Similarity=0.267 Sum_probs=33.5
Q ss_pred ccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521 58 KDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK 94 (175)
Q Consensus 58 ~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~ 94 (175)
..|.+..|++++-|+..--++-|..++++++++.+..
T Consensus 100 ~~g~~~~g~~VlIVDDvitTG~Tl~~~~~~l~~~Ga~ 136 (176)
T PRK13812 100 IEGRLDEGEEVVVLEDIATTGQSAVDAVEALREAGAT 136 (176)
T ss_pred EEecCCCcCEEEEEEEeeCCCHHHHHHHHHHHHCCCe
Confidence 3566889999999999999999999999999998876
No 144
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=28.80 E-value=64 Score=24.16 Aligned_cols=33 Identities=15% Similarity=0.013 Sum_probs=31.2
Q ss_pred cCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521 62 LKFGDQILELTGEDFRNITHAKAMAHLRLTPAK 94 (175)
Q Consensus 62 L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~ 94 (175)
+.+||+++-|+..--++-|...+.+++++.+..
T Consensus 114 l~~G~rVLIVDDvvtTGgT~~a~~~ll~~aGa~ 146 (191)
T TIGR01744 114 LSDQDRVLIIDDFLANGQAAHGLVDIAKQAGAK 146 (191)
T ss_pred CCCcCEEEEEEehhccChHHHHHHHHHHHCCCE
Confidence 789999999999999999999999999998877
No 145
>COG4273 Uncharacterized conserved protein [Function unknown]
Probab=28.62 E-value=1e+02 Score=21.71 Aligned_cols=73 Identities=22% Similarity=0.170 Sum_probs=52.1
Q ss_pred CCCCEEEEECCee-CCCCCHHHHHHHhhCCe----EEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHc
Q psy1521 16 LKGDQIMSVDGTD-VRDKSQEEVATIMKGGI----LVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRL 90 (175)
Q Consensus 16 ~~GD~Il~Vng~~-v~~~~~~~~~~~l~~gi----~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~ 90 (175)
++-+.|...-|-. |-.+.++-++.+-+.+. -+..|-.+.++..+- -+.|++|++++|-+ ..-|...|..
T Consensus 14 ~~l~lIfaCSG~snVgql~n~~av~L~kag~a~l~C~agvg~gv~~l~~~-arsgrrIlalDGCp-----~~Catk~l~~ 87 (135)
T COG4273 14 RKLPLIFACSGASNVGQLANQLAVALDKAGPAELSCTAGVGAGVPALVDA-ARSGRRILALDGCP-----LRCATKCLAE 87 (135)
T ss_pred CCCceEEEccccchHHHHHHHHHHHHhhcCcchheeeecccCCcHHHHHH-hhcCCceEEecCCh-----HHHHHHHHHH
Confidence 4667777777754 34555666776655442 366777888887776 88999999999944 5677777877
Q ss_pred CCCC
Q psy1521 91 TPAK 94 (175)
Q Consensus 91 ~~~~ 94 (175)
++-.
T Consensus 88 AGv~ 91 (135)
T COG4273 88 AGVQ 91 (135)
T ss_pred hccc
Confidence 7766
No 146
>PRK05449 aspartate alpha-decarboxylase; Provisional
Probab=28.25 E-value=1e+02 Score=21.55 Aligned_cols=58 Identities=21% Similarity=0.225 Sum_probs=31.8
Q ss_pred hhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhCCeEEEEecCCCcccccCCcCCCCEEEEECC
Q psy1521 9 AATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGGILVHDIYPEGAAAKDARLKFGDQILELTG 73 (175)
Q Consensus 9 A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG 73 (175)
-+++| |.++.+|.-+|=.+=..++. .+ +.+.-=-..|.-+|+|++. .++||+|+-..=
T Consensus 33 l~aag-i~p~E~V~V~Nv~NG~Rf~T-Yv---I~g~~GSg~I~lNGAAAr~--~~~GD~vII~ay 90 (126)
T PRK05449 33 LDAAG-ILENEKVQIVNVNNGARFET-YV---IAGERGSGVICLNGAAARL--VQVGDLVIIAAY 90 (126)
T ss_pred HHhcC-CCCCCEEEEEECCCCcEEEE-EE---EEcCCCCCEEEeCCHHHhc--CCCCCEEEEEEC
Confidence 34567 88888887776443222210 00 0000001134557888885 789999887643
No 147
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=28.12 E-value=43 Score=21.60 Aligned_cols=14 Identities=43% Similarity=0.693 Sum_probs=12.3
Q ss_pred CcCCCCEEEEECCe
Q psy1521 61 RLKFGDQILELTGE 74 (175)
Q Consensus 61 ~L~~GD~Il~VNG~ 74 (175)
+|++||+++...|.
T Consensus 37 ~L~~Gd~VvT~gGi 50 (84)
T TIGR00739 37 SLKKGDKVLTIGGI 50 (84)
T ss_pred hCCCCCEEEECCCe
Confidence 49999999999884
No 148
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=28.04 E-value=62 Score=24.19 Aligned_cols=34 Identities=18% Similarity=0.083 Sum_probs=31.8
Q ss_pred CcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521 61 RLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK 94 (175)
Q Consensus 61 ~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~ 94 (175)
.+.+||+++-|+..--.+-|...+.+++++.+..
T Consensus 113 ~i~~G~rVlIVDDviaTGgT~~a~~~lv~~aGa~ 146 (189)
T PRK09219 113 FLSEGDRVLIIDDFLANGQAALGLIDIIEQAGAK 146 (189)
T ss_pred hCCCCCEEEEEeehhhcChHHHHHHHHHHHCCCE
Confidence 4889999999999999999999999999998877
No 149
>KOG3369|consensus
Probab=27.94 E-value=36 Score=25.30 Aligned_cols=29 Identities=21% Similarity=0.367 Sum_probs=23.8
Q ss_pred cccccCCcCCCCEEEEECCeecCCCCHHHH
Q psy1521 55 AAAKDARLKFGDQILELTGEDFRNITHAKA 84 (175)
Q Consensus 55 ~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a 84 (175)
-+.++| ++.|-.+.+|||.++.+....+-
T Consensus 46 f~~kdg-ik~~~~~~~vNg~~v~g~~~~~G 74 (199)
T KOG3369|consen 46 FGSKDG-IKVGHLVQAVNGENVNGYILYDG 74 (199)
T ss_pred eecccc-cchhheeeeecccccccceeccc
Confidence 367888 99999999999999987755543
No 150
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=27.85 E-value=86 Score=23.83 Aligned_cols=39 Identities=13% Similarity=0.054 Sum_probs=35.3
Q ss_pred ccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521 56 AAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK 94 (175)
Q Consensus 56 A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~ 94 (175)
....|....|++++-|+..-..+.+-.+++++|+..+..
T Consensus 103 ~~ieG~~~~G~kVvvVEDViTTG~Si~eai~~l~~~G~~ 141 (201)
T COG0461 103 GLIEGGEVKGEKVVVVEDVITTGGSILEAVEALREAGAE 141 (201)
T ss_pred ceeEecCCCCCEEEEEEecccCCHhHHHHHHHHHHcCCe
Confidence 555666789999999999999999999999999998887
No 151
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=27.23 E-value=1.5e+02 Score=17.77 Aligned_cols=49 Identities=20% Similarity=0.329 Sum_probs=26.5
Q ss_pred EEECCeeCC---CCCHHHHHHHhh---CCeEEE---EecCCCcccccCCcCCCCEEEEE
Q psy1521 22 MSVDGTDVR---DKSQEEVATIMK---GGILVH---DIYPEGAAAKDARLKFGDQILEL 71 (175)
Q Consensus 22 l~Vng~~v~---~~~~~~~~~~l~---~gi~V~---~v~~gg~A~~~G~L~~GD~Il~V 71 (175)
+.|||.... +.+-.+.+..+. .++.|. .+.+.+-.+..- |+.||+|.-+
T Consensus 3 i~vNg~~~~~~~~~tl~~ll~~l~~~~~~vaVavN~~iv~r~~w~~~~-L~~gD~Ieii 60 (66)
T PRK08053 3 ILFNDQPMQCAAGQTVHELLEQLNQLQPGAALAINQQIIPREQWAQHI-VQDGDQILLF 60 (66)
T ss_pred EEECCeEEEcCCCCCHHHHHHHcCCCCCcEEEEECCEEeChHHcCccc-cCCCCEEEEE
Confidence 578888764 234455555443 233332 444444334433 8888876543
No 152
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=27.00 E-value=42 Score=22.67 Aligned_cols=15 Identities=27% Similarity=0.310 Sum_probs=12.7
Q ss_pred CcCCCCEEEEECCee
Q psy1521 61 RLKFGDQILELTGED 75 (175)
Q Consensus 61 ~L~~GD~Il~VNG~~ 75 (175)
+|++||+|+.+.|.-
T Consensus 52 ~Lk~Gd~VvT~gGi~ 66 (106)
T PRK05585 52 SLAKGDEVVTNGGII 66 (106)
T ss_pred hcCCCCEEEECCCeE
Confidence 499999999998843
No 153
>KOG1712|consensus
Probab=26.91 E-value=96 Score=22.90 Aligned_cols=41 Identities=17% Similarity=0.062 Sum_probs=35.8
Q ss_pred CcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521 54 GAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK 94 (175)
Q Consensus 54 g~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~ 94 (175)
...-+.|.+++|++++-|+..--.+-|..-|.+++.+.+..
T Consensus 111 ~~Emq~~Ai~~g~rvvvVDDllATGGTl~AA~~Ll~r~ga~ 151 (183)
T KOG1712|consen 111 RFEMQKGAIKPGQRVVVVDDLLATGGTLAAATELLERVGAE 151 (183)
T ss_pred ceeeeccccCCCCeEEEEechhhcCccHHHHHHHHHHhccE
Confidence 34445577999999999999999999999999999998887
No 154
>KOG1703|consensus
Probab=26.80 E-value=22 Score=30.64 Aligned_cols=49 Identities=27% Similarity=0.424 Sum_probs=43.1
Q ss_pred eEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521 45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK 94 (175)
Q Consensus 45 i~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~ 94 (175)
+-+..+.+++.++.+. +..+|.+..+++.+-..+.|.++..-.+..+..
T Consensus 23 l~~~~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (479)
T KOG1703|consen 23 LRILRVTPGGKAADAE-LDPGDIIAAIDGENEETMTHLEAQNKIKGSGSQ 71 (479)
T ss_pred cceeccCCCCcccccc-ccccccccccccccccccccccccCcccccccc
Confidence 6788999999999998 999999999999998999999988777666555
No 155
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=26.52 E-value=50 Score=27.71 Aligned_cols=27 Identities=26% Similarity=0.455 Sum_probs=15.7
Q ss_pred cCCcCCCCEEEEECCeecCCCCHHHHHHH
Q psy1521 59 DARLKFGDQILELTGEDFRNITHAKAMAH 87 (175)
Q Consensus 59 ~G~L~~GD~Il~VNG~~l~~~~~~~a~~~ 87 (175)
-|-|++||+++++.|.+-. |.+++.-+
T Consensus 90 fg~LrpGD~ll~~tG~PYD--TL~~VIG~ 116 (403)
T PF06838_consen 90 FGVLRPGDELLSITGKPYD--TLEEVIGI 116 (403)
T ss_dssp HHH--TT-EEEESSSS--C--CHHHHHTS
T ss_pred HhcCCCCCeEEEcCCCchh--hHHHHhCC
Confidence 3569999999999998864 45665533
No 156
>KOG0125|consensus
Probab=26.21 E-value=1.2e+02 Score=25.01 Aligned_cols=17 Identities=29% Similarity=0.724 Sum_probs=11.2
Q ss_pred EEEEEEeCCCCCcCEEE
Q psy1521 142 VDVELTKKAGKGFGLSL 158 (175)
Q Consensus 142 ~~v~l~k~~~~~lGfsi 158 (175)
++|.+..++++||||--
T Consensus 126 VEIIfNERGSKGFGFVT 142 (376)
T KOG0125|consen 126 VEIIFNERGSKGFGFVT 142 (376)
T ss_pred EEEEeccCCCCccceEE
Confidence 44555557788888853
No 157
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=26.07 E-value=64 Score=27.33 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=29.2
Q ss_pred EEEEecCCCcccccCCcCCCCEEEEEC-CeecCCCC
Q psy1521 46 LVHDIYPEGAAAKDARLKFGDQILELT-GEDFRNIT 80 (175)
Q Consensus 46 ~V~~v~~gg~A~~~G~L~~GD~Il~VN-G~~l~~~~ 80 (175)
.|+.+.+++.|+..| +..||-++.|| |.....+.
T Consensus 4 ~i~~v~~~~~~d~~G-fe~~~~l~~Vn~~~~~~~c~ 38 (414)
T COG1625 4 KISKVGGISGADCDG-FEEGDYLLKVNPGFGCKDCI 38 (414)
T ss_pred ceeeccCCCcccccC-ccccceeeecCCCCCCCcCC
Confidence 467889999999999 99999999999 77766553
No 158
>PRK04199 rpl10e 50S ribosomal protein L10e; Reviewed
Probab=25.67 E-value=78 Score=23.44 Aligned_cols=31 Identities=23% Similarity=0.245 Sum_probs=24.4
Q ss_pred CcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521 61 RLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK 94 (175)
Q Consensus 61 ~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~ 94 (175)
++++|+.|++|.+.. .+.+.|.++|+.+..+
T Consensus 125 ~Vk~G~ilfei~~~~---~~~~~akeAlr~a~~K 155 (172)
T PRK04199 125 RVEKGQKIFTVRVNP---EHLEAAKEALRRAAMK 155 (172)
T ss_pred EECcCCEEEEEEecC---CCHHHHHHHHHHhhcc
Confidence 468899999998754 3567888899887766
No 159
>PRK10413 hydrogenase 2 accessory protein HypG; Provisional
Probab=25.48 E-value=1e+02 Score=19.81 Aligned_cols=27 Identities=15% Similarity=0.166 Sum_probs=23.4
Q ss_pred CCCCCEEEEECCeeCCCCCHHHHHHHh
Q psy1521 15 LLKGDQIMSVDGTDVRDKSQEEVATIM 41 (175)
Q Consensus 15 L~~GD~Il~Vng~~v~~~~~~~~~~~l 41 (175)
++.||.+|-=.|..++-++.+++.+.+
T Consensus 43 ~~vGDyVLVHaGfAi~~ideeeA~etl 69 (82)
T PRK10413 43 DLLGQWVLVHVGFAMSIIDEDEAKATL 69 (82)
T ss_pred cccCCEEEEecchhhhhCCHHHHHHHH
Confidence 678999999999999999988887664
No 160
>KOG1753|consensus
Probab=25.46 E-value=53 Score=23.17 Aligned_cols=33 Identities=15% Similarity=0.216 Sum_probs=26.2
Q ss_pred CCCCCEEEEECCeeCCCCCHHHHHHHhhCCeEE
Q psy1521 15 LLKGDQIMSVDGTDVRDKSQEEVATIMKGGILV 47 (175)
Q Consensus 15 L~~GD~Il~Vng~~v~~~~~~~~~~~l~~gi~V 47 (175)
-+.|+-+++|||.+++-+.+.-....|..++.+
T Consensus 24 ck~G~glikvNg~ple~ie~~~L~~Kl~Epvll 56 (145)
T KOG1753|consen 24 CKHGSGLIKVNGRPLELIEPEILRYKLLEPVLL 56 (145)
T ss_pred eecCceEEEECCcchHhccHHHHHHHHhhhHhh
Confidence 578999999999999988877776666665543
No 161
>CHL00044 rpl16 ribosomal protein L16
Probab=25.26 E-value=73 Score=22.54 Aligned_cols=36 Identities=22% Similarity=0.213 Sum_probs=26.5
Q ss_pred CcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521 54 GAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK 94 (175)
Q Consensus 54 g~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~ 94 (175)
.+..-.-++++|+.|+++.|.+ .+.|..+|+.+...
T Consensus 89 ~~~~~va~V~~G~ilfEi~g~~-----~~~ak~al~~a~~K 124 (135)
T CHL00044 89 SPEYWVAVVKPGRILYEMGGVS-----ETIARAAIKIAAYK 124 (135)
T ss_pred CccEEEEEECCCcEEEEEeCCC-----HHHHHHHHHHHhhc
Confidence 3333344589999999998844 46888888887766
No 162
>PLN02293 adenine phosphoribosyltransferase
Probab=24.89 E-value=87 Score=23.35 Aligned_cols=35 Identities=17% Similarity=0.089 Sum_probs=32.0
Q ss_pred CCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521 60 ARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK 94 (175)
Q Consensus 60 G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~ 94 (175)
|.+..|++++-|+..--++-|...+.+++++.+..
T Consensus 120 ~~i~~G~rVlIVDDvitTG~T~~~~~~~l~~~Ga~ 154 (187)
T PLN02293 120 GAVEPGERALVIDDLIATGGTLCAAINLLERAGAE 154 (187)
T ss_pred CccCCCCEEEEEeccccchHHHHHHHHHHHHCCCE
Confidence 55889999999999999999999999999998876
No 163
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=24.51 E-value=92 Score=23.63 Aligned_cols=36 Identities=8% Similarity=-0.020 Sum_probs=32.5
Q ss_pred cCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521 59 DARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK 94 (175)
Q Consensus 59 ~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~ 94 (175)
.|.+..|++++-|+..-.++.|..++.++|++.+..
T Consensus 112 ~g~~~~g~~VlIVDDViTTG~Ti~~a~~~L~~~G~~ 147 (206)
T PRK13809 112 EGLFTPGQTCLVINDMVSSGKSIIETAVALEEEGLV 147 (206)
T ss_pred ccccCCCCEEEEEEeccccCHHHHHHHHHHHHCCCE
Confidence 455789999999999999999999999999998776
No 164
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=24.45 E-value=87 Score=27.14 Aligned_cols=39 Identities=5% Similarity=0.076 Sum_probs=35.1
Q ss_pred ccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521 56 AAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK 94 (175)
Q Consensus 56 A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~ 94 (175)
....|.+.+||+++-|+..-.++.|..++++++++.+..
T Consensus 384 ~~ieG~~~~G~rVlIVDDViTTGgSi~eaie~l~~aG~~ 422 (477)
T PRK05500 384 RLIEGNFHPGETVVVVDDILITGKSVMEGAEKLKSAGLN 422 (477)
T ss_pred ceEecCCCCcCEEEEEEeccccCHHHHHHHHHHHHCCCE
Confidence 345678999999999999999999999999999998877
No 165
>TIGR00074 hypC_hupF hydrogenase assembly chaperone HypC/HupF. An additional proposed function is to shuttle the iron atom that has been liganded at the HypC/HypD complex to the precursor of the large hydrogenase (HycE) subunit. PubMed:12441107.
Probab=24.18 E-value=1.2e+02 Score=19.14 Aligned_cols=29 Identities=24% Similarity=0.304 Sum_probs=25.7
Q ss_pred cCCCCEEEEECCeecCCCCHHHHHHHHHc
Q psy1521 62 LKFGDQILELTGEDFRNITHAKAMAHLRL 90 (175)
Q Consensus 62 L~~GD~Il~VNG~~l~~~~~~~a~~~lk~ 90 (175)
.++||.++-=.|.-++-++.++|...++.
T Consensus 36 ~~vGD~VLVH~G~Ai~~ide~eA~e~l~~ 64 (76)
T TIGR00074 36 VKVGDYVLVHVGFAISVLDEEEARETLDA 64 (76)
T ss_pred CCCCCEEEEecChhhhhCCHHHHHHHHHH
Confidence 88999999999999999999999877753
No 166
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=24.00 E-value=53 Score=22.38 Aligned_cols=14 Identities=29% Similarity=0.463 Sum_probs=12.3
Q ss_pred CcCCCCEEEEECCe
Q psy1521 61 RLKFGDQILELTGE 74 (175)
Q Consensus 61 ~L~~GD~Il~VNG~ 74 (175)
.|++||+|+.+.|.
T Consensus 38 ~Lk~GD~VvT~gGi 51 (109)
T PRK05886 38 SLQPGDRVHTTSGL 51 (109)
T ss_pred hcCCCCEEEECCCe
Confidence 49999999999884
No 167
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=23.65 E-value=1.3e+02 Score=23.80 Aligned_cols=57 Identities=21% Similarity=0.127 Sum_probs=42.5
Q ss_pred CCCCCEEEEECCe--eCCCCCHHHHHHHhh-CCeEEEEecCCCcccccCCcCCCCEEEEEC
Q psy1521 15 LLKGDQIMSVDGT--DVRDKSQEEVATIMK-GGILVHDIYPEGAAAKDARLKFGDQILELT 72 (175)
Q Consensus 15 L~~GD~Il~Vng~--~v~~~~~~~~~~~l~-~gi~V~~v~~gg~A~~~G~L~~GD~Il~VN 72 (175)
...|+.|.+..|. -|...+..+....++ ...+|---..+-.+.+.| |.+|++|++..
T Consensus 43 k~~G~~i~s~~G~~f~vl~p~~~d~~~~~~R~tQiIyPKD~~~I~~~~g-i~pg~rVlEAG 102 (256)
T COG2519 43 KPYGEVIKSHLGVKFYVLKPTPEDYLLSMKRRTQIIYPKDAGYIVARLG-ISPGSRVLEAG 102 (256)
T ss_pred CCCCceEEeeCCceEEEeCCCHHHHHHhCcCCCceecCCCHHHHHHHcC-CCCCCEEEEcc
Confidence 5669999999995 455667777776665 455555555566688888 99999999984
No 168
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=23.64 E-value=88 Score=22.80 Aligned_cols=37 Identities=11% Similarity=0.128 Sum_probs=32.8
Q ss_pred ccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521 58 KDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK 94 (175)
Q Consensus 58 ~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~ 94 (175)
..|.+..|++++-|+..--++-|..++.++|++.+..
T Consensus 101 ~~g~~~~g~~VlIVDDvi~TG~Tl~~a~~~l~~~Ga~ 137 (173)
T TIGR00336 101 IEGELLEGDKVVVVEDVITTGTSILEAVEIIQAAGGQ 137 (173)
T ss_pred eecCCCCCCEEEEEeccccChHHHHHHHHHHHHcCCe
Confidence 3355889999999999999999999999999998776
No 169
>COG0307 RibC Riboflavin synthase alpha chain [Coenzyme metabolism]
Probab=23.61 E-value=38 Score=25.78 Aligned_cols=15 Identities=33% Similarity=0.552 Sum_probs=12.9
Q ss_pred CCCCCEEEEECCeeCC
Q psy1521 15 LLKGDQIMSVDGTDVR 30 (175)
Q Consensus 15 L~~GD~Il~Vng~~v~ 30 (175)
+..||-| +|||+++.
T Consensus 33 ~~lGdSI-AvnGvCLT 47 (204)
T COG0307 33 VKLGDSI-AVNGVCLT 47 (204)
T ss_pred CccCCeE-EECCEEEE
Confidence 8889998 89999864
No 170
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=23.33 E-value=52 Score=22.58 Aligned_cols=14 Identities=21% Similarity=0.565 Sum_probs=12.1
Q ss_pred CcCCCCEEEEECCe
Q psy1521 61 RLKFGDQILELTGE 74 (175)
Q Consensus 61 ~L~~GD~Il~VNG~ 74 (175)
.|++||+|+.+.|.
T Consensus 36 sLk~GD~VvT~GGi 49 (113)
T PRK06531 36 AIQKGDEVVTIGGL 49 (113)
T ss_pred hcCCCCEEEECCCc
Confidence 49999999998874
No 171
>COG0853 PanD Aspartate 1-decarboxylase [Coenzyme metabolism]
Probab=23.06 E-value=1.3e+02 Score=21.07 Aligned_cols=58 Identities=22% Similarity=0.253 Sum_probs=32.1
Q ss_pred hhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhCCeEEEEecCCCcccccCCcCCCCEEEEECC
Q psy1521 9 AATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGGILVHDIYPEGAAAKDARLKFGDQILELTG 73 (175)
Q Consensus 9 A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG 73 (175)
.+.+| |.++.++--+|-.+-..++. .+ +.+.---..+.-+|+|++. .++||+++-..=
T Consensus 32 ldaag-ile~EkV~I~N~nNGaRf~T-Yv---I~g~rGSg~I~lNGAAArl--~~~GD~VII~sy 89 (126)
T COG0853 32 LDAAG-ILENEKVDIVNVNNGARFST-YV---IAGERGSGVICLNGAAARL--VQVGDLVIIMSY 89 (126)
T ss_pred HhhcC-CCCCceEEEEECCCCcEEEE-EE---EEccCCCcEEEechHHHhh--CCCCCEEEEEEc
Confidence 34567 88888887776544322210 00 0000001234457888886 799999887654
No 172
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=22.96 E-value=1.9e+02 Score=17.73 Aligned_cols=50 Identities=24% Similarity=0.383 Sum_probs=25.4
Q ss_pred EEEECCeeCCCCC---HHHHHHHhh---CCeEEE---EecCCCcccccCCcCCCCEEEEE
Q psy1521 21 IMSVDGTDVRDKS---QEEVATIMK---GGILVH---DIYPEGAAAKDARLKFGDQILEL 71 (175)
Q Consensus 21 Il~Vng~~v~~~~---~~~~~~~l~---~gi~V~---~v~~gg~A~~~G~L~~GD~Il~V 71 (175)
-+.+||..++-.. -.+.+..+. .++.+. .+.|.+-.+..- |+.||+|.-|
T Consensus 4 ~i~~ng~~~e~~~~~tv~dLL~~l~~~~~~vav~vNg~iVpr~~~~~~~-l~~gD~ievv 62 (68)
T COG2104 4 TIQLNGKEVEIAEGTTVADLLAQLGLNPEGVAVAVNGEIVPRSQWADTI-LKEGDRIEVV 62 (68)
T ss_pred EEEECCEEEEcCCCCcHHHHHHHhCCCCceEEEEECCEEccchhhhhcc-ccCCCEEEEE
Confidence 3567777765333 233333332 122222 445555444443 8888887544
No 173
>PF01079 Hint: Hint module; InterPro: IPR001767 This domain identifies a group of cysteine peptidases correspond to MEROPS peptidase family C46 (clan CH). The type example is the Hedgehog protein from Drosophila melanogaster (Fruit fly). These are involved in intracellular signalling required for a variety of patterning events during development. The hedgehog family of proteins self process by a cysteine-dependent mechanism, which is a one-time autolytic cleavage. It is differentiated from a typical peptidase reaction by the fact that the newly-formed carboxyl group is esterified with cholesterol, rather than being left free. The three-dimensional structure of the autolytic domain of the hedgehog protein of D. melanogaster shows that it is formed from two divergent copies of a module that also occurs in inteins, called a Hint domain [,].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3K7H_B 3K7I_B 3K7G_B 1AT0_A 3MXW_A 3M1N_B 3HO5_H 2WFR_A 2WFQ_A 2WG3_B ....
Probab=22.88 E-value=44 Score=25.67 Aligned_cols=27 Identities=26% Similarity=0.273 Sum_probs=14.7
Q ss_pred CeEEEEecCCC----cccccCCcCCCCEEEE
Q psy1521 44 GILVHDIYPEG----AAAKDARLKFGDQILE 70 (175)
Q Consensus 44 gi~V~~v~~gg----~A~~~G~L~~GD~Il~ 70 (175)
-||+..-.... .+-.+.++++||.|+.
T Consensus 84 LI~v~~~~~~~~~~~~~vfA~~V~~Gd~v~~ 114 (217)
T PF01079_consen 84 LIFVADCNGSESSNFRAVFASDVRVGDCVLV 114 (217)
T ss_dssp EEEEEETTTTEE---EEEEGGG--TT-EEEE
T ss_pred EEEEecCCCCcccccceeehhhCCCCCEEEE
Confidence 35666544332 2455667999999998
No 174
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=22.87 E-value=1.8e+02 Score=18.65 Aligned_cols=53 Identities=15% Similarity=0.204 Sum_probs=29.9
Q ss_pred CCEEEEECCeeCCC---CCHHHHHHHhh---CCeEEE---EecCCCcccccCCcCCCCEEEEE
Q psy1521 18 GDQIMSVDGTDVRD---KSQEEVATIMK---GGILVH---DIYPEGAAAKDARLKFGDQILEL 71 (175)
Q Consensus 18 GD~Il~Vng~~v~~---~~~~~~~~~l~---~gi~V~---~v~~gg~A~~~G~L~~GD~Il~V 71 (175)
...-+.|||....- .+-.+.+..+. .++.|. .+.|.+-.+..- |+.||+|--+
T Consensus 17 ~~m~I~VNG~~~~~~~~~tl~~LL~~l~~~~~~vAVevNg~iVpr~~w~~t~-L~egD~IEIv 78 (84)
T PRK06083 17 VLITISINDQSIQVDISSSLAQIIAQLSLPELGCVFAINNQVVPRSEWQSTV-LSSGDAISLF 78 (84)
T ss_pred ceEEEEECCeEEEcCCCCcHHHHHHHcCCCCceEEEEECCEEeCHHHcCccc-CCCCCEEEEE
Confidence 35558999987643 34455555442 233332 455555555444 8888877544
No 175
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=22.52 E-value=70 Score=22.16 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=17.6
Q ss_pred EEEecCCCcccccCCcCCCCEEEEE
Q psy1521 47 VHDIYPEGAAAKDARLKFGDQILEL 71 (175)
Q Consensus 47 V~~v~~gg~A~~~G~L~~GD~Il~V 71 (175)
...+++.+.|. .-.|++||.+|+-
T Consensus 42 ~~~iI~~~~~~-~~~L~~GD~VLA~ 65 (124)
T PF15057_consen 42 ISDIIALSDAM-RHSLQVGDKVLAP 65 (124)
T ss_pred hHHeEEccCcc-cCcCCCCCEEEEe
Confidence 34556666666 4459999999998
No 176
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=22.31 E-value=1.9e+02 Score=17.29 Aligned_cols=48 Identities=19% Similarity=0.292 Sum_probs=25.2
Q ss_pred EEECCeeCCC---CCHHHHHHHhh---CCeEEE---EecCCCcccccCCcCCCCEEEEE
Q psy1521 22 MSVDGTDVRD---KSQEEVATIMK---GGILVH---DIYPEGAAAKDARLKFGDQILEL 71 (175)
Q Consensus 22 l~Vng~~v~~---~~~~~~~~~l~---~gi~V~---~v~~gg~A~~~G~L~~GD~Il~V 71 (175)
+.|||....- .+-.+++..+. .++.|. .+.+....+. .|+.||+|-=+
T Consensus 3 i~vNG~~~~~~~~~tl~~ll~~l~~~~~~vav~~N~~iv~r~~~~~--~L~~gD~ieIv 59 (65)
T PRK05863 3 VVVNEEQVEVDEQTTVAALLDSLGFPEKGIAVAVDWSVLPRSDWAT--KLRDGARLEVV 59 (65)
T ss_pred EEECCEEEEcCCCCcHHHHHHHcCCCCCcEEEEECCcCcChhHhhh--hcCCCCEEEEE
Confidence 5788887643 34455555443 233332 3444444443 38888876543
No 177
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=22.15 E-value=38 Score=27.48 Aligned_cols=67 Identities=27% Similarity=0.422 Sum_probs=37.1
Q ss_pred CCChhhhcCCCCCCCEEEEECCeeCCCCC--------------------HHHHHHHhhCCeEEEEecCCCc-ccccCCcC
Q psy1521 5 PGGIAATDGRLLKGDQIMSVDGTDVRDKS--------------------QEEVATIMKGGILVHDIYPEGA-AAKDARLK 63 (175)
Q Consensus 5 ~~~~A~~~G~L~~GD~Il~Vng~~v~~~~--------------------~~~~~~~l~~gi~V~~v~~gg~-A~~~G~L~ 63 (175)
||+--..-.-|++||.++-|+..--.... -.+...+|++.=.|.-+.++|- -.-+- |+
T Consensus 271 Pg~kTkYLaEL~aGDeV~iVD~dGr~R~aiVGRvKIErRPl~lIeAey~g~~i~tiLQNAETIkLv~~dG~pvSV~e-Lk 349 (376)
T COG1465 271 PGGKTKYLAELKAGDEVLIVDFDGRTRSAIVGRVKIERRPLMLIEAEYEGVEISTILQNAETIKLVNPDGEPVSVAE-LK 349 (376)
T ss_pred CCCceEEhhhhcCCCeEEEEecCCceeEEEEEEEEeecCceEEEEEEecCcEEEEEeccceeEEEEcCCCcEeeeEe-cC
Confidence 34333333349999999988753211100 0111122344556777777764 44444 99
Q ss_pred CCCEEEEEC
Q psy1521 64 FGDQILELT 72 (175)
Q Consensus 64 ~GD~Il~VN 72 (175)
+||.++--=
T Consensus 350 ~GD~vlv~~ 358 (376)
T COG1465 350 PGDEVLVYL 358 (376)
T ss_pred CCCEEEEEe
Confidence 999988643
No 178
>PF10902 DUF2693: Protein of unknown function (DUF2693); InterPro: IPR024401 This family of proteins is found in bacteria and bacteriophages. Its function is unknown.
Probab=21.97 E-value=40 Score=21.80 Aligned_cols=13 Identities=31% Similarity=0.713 Sum_probs=11.0
Q ss_pred CEEEEECCeeCCC
Q psy1521 19 DQIMSVDGTDVRD 31 (175)
Q Consensus 19 D~Il~Vng~~v~~ 31 (175)
|.+++|||..+.+
T Consensus 67 dnLIsV~gl~~~~ 79 (83)
T PF10902_consen 67 DNLISVNGLKIET 79 (83)
T ss_pred eeEEEECCcChHh
Confidence 8899999988754
No 179
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=20.68 E-value=42 Score=28.11 Aligned_cols=27 Identities=37% Similarity=0.500 Sum_probs=16.1
Q ss_pred cCCCCCCCEEEEECCeeCCCCCHHHHHHH
Q psy1521 12 DGRLLKGDQIMSVDGTDVRDKSQEEVATI 40 (175)
Q Consensus 12 ~G~L~~GD~Il~Vng~~v~~~~~~~~~~~ 40 (175)
-|-||+||.++++.|.+-+++ ++++.+
T Consensus 90 fg~LrpGD~ll~~tG~PYDTL--~~VIG~ 116 (403)
T PF06838_consen 90 FGVLRPGDELLSITGKPYDTL--EEVIGI 116 (403)
T ss_dssp HHH--TT-EEEESSSS--CCH--HHHHTS
T ss_pred HhcCCCCCeEEEcCCCchhhH--HHHhCC
Confidence 355999999999999997753 555543
No 180
>PRK11536 6-N-hydroxylaminopurine resistance protein; Provisional
Probab=20.54 E-value=4.1e+02 Score=20.53 Aligned_cols=69 Identities=14% Similarity=0.122 Sum_probs=44.0
Q ss_pred CCCCCEEEEECCeeCCCCCHH----------HHHHHhhCCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHH
Q psy1521 15 LLKGDQIMSVDGTDVRDKSQE----------EVATIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKA 84 (175)
Q Consensus 15 L~~GD~Il~Vng~~v~~~~~~----------~~~~~l~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a 84 (175)
+|.|+.+|+|----...+... .+.+.-+.|+|..=+.+ |.+++||.|.-+.-- ..+|..++
T Consensus 104 ~riG~avleVsqpR~PC~kl~~r~~~~~~~~~~~~~g~~G~Y~RVL~~-------G~V~~GD~v~l~~r~--~~~tv~~~ 174 (223)
T PRK11536 104 FRWGEALIQVTQPRSPCYKLNYHFDISDIAQLMQNSGKCGWLYRVIAP-------GKVSADAPLELVSRV--SDVSVQEA 174 (223)
T ss_pred EEECCEEEEEecCCCCCCchhhhccchhHHHHHHhhCCcEEEEEEECC-------cEEcCCCEEEEEeCC--CCCCHHHH
Confidence 667777787765444443321 22222345888765555 469999998888664 36888888
Q ss_pred HHHHHcCC
Q psy1521 85 MAHLRLTP 92 (175)
Q Consensus 85 ~~~lk~~~ 92 (175)
..++-...
T Consensus 175 ~~~~~~~~ 182 (223)
T PRK11536 175 AAIAWHMP 182 (223)
T ss_pred HHHHhcCC
Confidence 88876543
No 181
>PRK03818 putative transporter; Validated
Probab=20.43 E-value=2.5e+02 Score=24.83 Aligned_cols=53 Identities=11% Similarity=0.236 Sum_probs=37.3
Q ss_pred EEEEECCeeCCCCCHHHHHHHhhCCeEEEEecCCCc---ccccCCcCCCCEEEEEC
Q psy1521 20 QIMSVDGTDVRDKSQEEVATIMKGGILVHDIYPEGA---AAKDARLKFGDQILELT 72 (175)
Q Consensus 20 ~Il~Vng~~v~~~~~~~~~~~l~~gi~V~~v~~gg~---A~~~G~L~~GD~Il~VN 72 (175)
+=+.|.+-++...+-.|.......++.|.++..++- ...+-.|+.||+|+-+-
T Consensus 207 r~~~V~~s~liGkTv~el~~~~~~~v~V~~I~R~g~~~~p~~~~~L~~GDiLlV~G 262 (552)
T PRK03818 207 INIRVENPNLHGKAIKDVPILNGDKFVCSRLKRGDTLMVPSPDTIIQLGDLLHLVG 262 (552)
T ss_pred EEEEEeCCCCCCCcHHHHHhhhCCCEEEEEEEECCEEECCCCCCccCCCCEEEEEE
Confidence 445566555666677777777778899999988762 12334699999988763
No 182
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=20.40 E-value=75 Score=21.17 Aligned_cols=15 Identities=33% Similarity=0.539 Sum_probs=12.5
Q ss_pred CcCCCCEEEEECCee
Q psy1521 61 RLKFGDQILELTGED 75 (175)
Q Consensus 61 ~L~~GD~Il~VNG~~ 75 (175)
.|+.||+++.+.|.-
T Consensus 43 sL~kGD~VvT~gGi~ 57 (97)
T COG1862 43 SLKKGDEVVTIGGIV 57 (97)
T ss_pred hccCCCEEEEcCCeE
Confidence 399999999998743
No 183
>PF13403 Hint_2: Hint domain
Probab=20.30 E-value=84 Score=22.40 Aligned_cols=21 Identities=33% Similarity=0.710 Sum_probs=16.0
Q ss_pred CCCcccccCCcCCCCEEEEECC
Q psy1521 52 PEGAAAKDARLKFGDQILELTG 73 (175)
Q Consensus 52 ~gg~A~~~G~L~~GD~Il~VNG 73 (175)
+.|+..-.. |++||+++.-+|
T Consensus 12 ~~G~~~Ve~-L~~GD~V~T~dg 32 (147)
T PF13403_consen 12 PDGPRPVED-LRPGDRVLTRDG 32 (147)
T ss_pred CCcCeEeec-cCCCCEEEecCC
Confidence 455555555 999999999975
No 184
>COG0260 PepB Leucyl aminopeptidase [Amino acid transport and metabolism]
Probab=20.28 E-value=1.1e+02 Score=26.57 Aligned_cols=32 Identities=16% Similarity=0.188 Sum_probs=24.8
Q ss_pred eEEEEecCCCcccccCCcCCCCEEEEECCeecCC
Q psy1521 45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRN 78 (175)
Q Consensus 45 i~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~ 78 (175)
+.|....++-|...+ .++||.|.+-||+.++=
T Consensus 300 ~~vl~~~ENm~~g~A--~rPGDVits~~GkTVEV 331 (485)
T COG0260 300 VGVLPAVENMPSGNA--YRPGDVITSMNGKTVEV 331 (485)
T ss_pred EEEEeeeccCCCCCC--CCCCCeEEecCCcEEEE
Confidence 445566677777665 89999999999999873
No 185
>PRK13669 hypothetical protein; Provisional
Probab=20.12 E-value=2.5e+02 Score=17.95 Aligned_cols=41 Identities=12% Similarity=0.083 Sum_probs=32.9
Q ss_pred EecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHc
Q psy1521 49 DIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRL 90 (175)
Q Consensus 49 ~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~ 90 (175)
.|..-|.....| +-.-.--.-|||..+...|.++.++.++.
T Consensus 30 dVie~gCls~CG-~C~~~~FAlVng~~V~a~t~eeL~~kI~~ 70 (78)
T PRK13669 30 DVLEYGCLGYCG-ICSEGLFALVNGEVVEGETPEELVENIYA 70 (78)
T ss_pred eEEEcchhhhCc-CcccCceEEECCeEeecCCHHHHHHHHHH
Confidence 345667777788 77777778899999999999998877764
Done!