RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1521
(175 letters)
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90,
GLUR6, cell juncti membrane, lipoprotein, membrane,
palmitate, phosphoprotein; 2.05A {Rattus norvegicus}
PDB: 3zrt_A 2ka9_A
Length = 196
Score = 83.3 bits (206), Expect = 1e-20
Identities = 35/137 (25%), Positives = 48/137 (35%), Gaps = 48/137 (35%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK--------------------- 42
+PGG AA DGRL D I+ V+ DVR+ + +K
Sbjct: 43 IPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVM 102
Query: 43 ---------------------------GGILVHDIYPEGAAAKDARLKFGDQILELTGED 75
I V I GAA KD RL+ GD+IL +
Sbjct: 103 EIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVG 162
Query: 76 FRNITHAKAMAHLRLTP 92
++ H A+A L+ T
Sbjct: 163 LEDVMHEDAVAALKNTY 179
Score = 68.2 bits (167), Expect = 7e-15
Identities = 31/139 (22%), Positives = 49/139 (35%), Gaps = 39/139 (28%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTV 101
I + I P GAAA+D RL+ D IL + D R +TH+ A+ L+ +
Sbjct: 34 DPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGS-------- 85
Query: 102 PSEPNANATTGEKTTFYFHFQVKLVVLRDTVTKEDDLLEFVDVELTKKAGKGFGLSLVGR 161
V+L V+R E V K KG G S+ G
Sbjct: 86 --------------------IVRLYVMRRKPPA-----EKVMEIKLIKGPKGLGFSIAGG 120
Query: 162 KQGP------GVFISDLVS 174
++++ ++
Sbjct: 121 VGNQHIPGDNSIYVTKIIE 139
Score = 30.5 bits (69), Expect = 0.17
Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 7/40 (17%)
Query: 140 EFVDVELTKKAGKGFGLSLVG------RKQGPGVFISDLV 173
E+ ++ L ++ G G S+ G P +FI+ ++
Sbjct: 5 EYEEITL-ERGNSGLGFSIAGGTDNPHIGDDPSIFITKII 43
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein
complex, PDZ domain, peptide binding protein; 2.60A
{Drosophila melanogaster}
Length = 206
Score = 78.4 bits (193), Expect = 1e-18
Identities = 26/151 (17%), Positives = 43/151 (28%), Gaps = 49/151 (32%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKS--QEEVATIMK------------------- 42
P G A D RL D I ++GT + S +V +
Sbjct: 53 YPEGQVAADKRLKIFDHICDINGTPIHVGSMTTLKVHQLFHTTYEKAVTLTVFRADPPEL 112
Query: 43 -----------------------GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNI 79
G + D+ D++L+ GD I + G+ +
Sbjct: 113 EKFNVDLMKKAGKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGL 172
Query: 80 THAKAMAHLRLTPAK-----AKPCPTVPSEP 105
A + K +P PT+ +E
Sbjct: 173 PFQVCYALFKGANGKVSMEVTRPKPTLRTEA 203
Score = 70.7 bits (173), Expect = 9e-16
Identities = 36/137 (26%), Positives = 51/137 (37%), Gaps = 35/137 (25%)
Query: 39 TIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFR--NITHAKAMAHLRLTPAKAK 96
+ G ++ +YPEG A D RLK D I ++ G ++T K T KA
Sbjct: 41 NHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTTLKVHQLFHTTYEKAV 100
Query: 97 PCPTVPSEPNANATTGEKTTFYFHFQVKLVVLRDTVTKEDDLLEFVDVELTKKAGKGFGL 156
L V R + + +V+L KKAGK GL
Sbjct: 101 ---------------------------TLTVFRADPPELE----KFNVDLMKKAGKELGL 129
Query: 157 SLVGRKQGPGVFISDLV 173
SL + G I+DL+
Sbjct: 130 SLSPNE--IGCTIADLI 144
Score = 29.1 bits (65), Expect = 0.69
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 140 EFVDVELTKKAGKGFGLSLVG---RKQGPGVFISDLV 173
+ + +EL K K G+ + G G I+ +
Sbjct: 18 KKILIEL-KVEKKPMGVIVCGGKNNHVTTGCVITHVY 53
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem
repeats, scaffold protein, protein binding; NMR {Rattus
norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Length = 196
Score = 77.9 bits (192), Expect = 1e-18
Identities = 19/141 (13%), Positives = 40/141 (28%), Gaps = 52/141 (36%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG-------------------- 43
A G L GD++M+++G D + EE +++
Sbjct: 44 EADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVI 103
Query: 44 --------------------------------GILVHDIYPEGAAAKDARLKFGDQILEL 71
+++ DI A + L+ GD++L +
Sbjct: 104 PSSGTFHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAI 163
Query: 72 TGEDFRNITHAKAMAHLRLTP 92
+ + A+ L+
Sbjct: 164 DNIRLDSCSMEDAVQILQQCE 184
Score = 76.7 bits (189), Expect = 3e-18
Identities = 25/134 (18%), Positives = 45/134 (33%), Gaps = 29/134 (21%)
Query: 43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVP 102
L+ I + A + L+ GD+++ + G + T +A LR + +
Sbjct: 36 SPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITS------- 88
Query: 103 SEPNANATTGEKTTFYFHFQVKLVVLRDTVTKEDDLLEFVDVELTKKAGKGFGLSLVG-- 160
+V L + D V+L KK G+++
Sbjct: 89 -------------------KVTLEIEFDVAESVIPSSGTFHVKLPKKHSVELGITISSPS 129
Query: 161 -RKQGPGVFISDLV 173
RK G + ISD+
Sbjct: 130 SRKPGDPLVISDIK 143
Score = 34.0 bits (78), Expect = 0.012
Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 5/39 (12%)
Query: 140 EFVDVELTKKAGKGFGLSLVGRKQGP-----GVFISDLV 173
E +V LT GFG+ L G IS +
Sbjct: 6 ETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIE 44
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 79.2 bits (194), Expect = 8e-18
Identities = 53/244 (21%), Positives = 84/244 (34%), Gaps = 75/244 (30%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK--------------------- 42
+PGG AA DGRL D I+ V+ DVR+ + +K
Sbjct: 97 IPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVM 156
Query: 43 ---------------------------GGILVHDIYPEGAAAKDARLKFGDQILELTGED 75
I V I GAA KD RL+ GD+IL +
Sbjct: 157 EIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVG 216
Query: 76 FRNITHAKAMAHLR-----LTPAKAKPC----------PTVPSEPNANATTGEKTTFYFH 120
++ H A+A L+ + AKP P + + + + + Y
Sbjct: 217 LEDVMHEDAVAALKNTYDVVYLKVAKPSNAYLSDSYAPPDITTSYSQHLDNEISHSSYLG 276
Query: 121 FQVKLV-----------VLRDTVTKEDDLLEFVDVELTKKAGKGFGLSLVGRKQGPGVFI 169
V +D + +ED E + + + G G ++VG + G G+FI
Sbjct: 277 TDYPTAMTPTSPRRYSPVAKDLLGEEDIPREPRRIVIHRG-STGLGFNIVGGEDGEGIFI 335
Query: 170 SDLV 173
S ++
Sbjct: 336 SFIL 339
Score = 61.5 bits (148), Expect = 1e-11
Identities = 22/102 (21%), Positives = 35/102 (34%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTV 101
I + I P GAAA+D RL+ D IL + D R +TH+ A+ L+ + +
Sbjct: 88 DPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMR 147
Query: 102 PSEPNANATTGEKTTFYFHFQVKLVVLRDTVTKEDDLLEFVD 143
P + + D +V
Sbjct: 148 RKPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVT 189
Score = 54.5 bits (130), Expect = 2e-09
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
GI + I G A L+ GDQIL + G D RN +H +A L+
Sbjct: 330 GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALK 377
Score = 48.0 bits (113), Expect = 4e-07
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
+ GG A G L KGDQI+SV+G D+R+ S E+ A +K
Sbjct: 337 FILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKN 378
Score = 29.9 bits (66), Expect = 0.49
Identities = 12/86 (13%), Positives = 29/86 (33%), Gaps = 9/86 (10%)
Query: 94 KAKPCPTVPSEPNANATTGEKTTFYFHFQVKLVVLRDTVTKEDDLLEFVDVELTKKAGKG 153
+ + P + P + + V + +E+ ++ L ++ G
Sbjct: 15 QDEDTPPLKHSPAHLPNQANSPPVIVNTDT--LEAPGYVNGTEGEMEYEEITL-ERGNSG 71
Query: 154 FGLSLVG------RKQGPGVFISDLV 173
G S+ G P +FI+ ++
Sbjct: 72 LGFSIAGGTDNPHIGDDPSIFITKII 97
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding;
2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A
1u37_A 1u38_A 2yt8_A
Length = 388
Score = 72.3 bits (176), Expect = 1e-15
Identities = 26/125 (20%), Positives = 44/125 (35%), Gaps = 37/125 (29%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG-------------------- 43
+ GG AA G+L GDQIMS++GT + I+KG
Sbjct: 240 MNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSCPPVTTV 299
Query: 44 ----------------GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAH 87
++ + G A + ++ G +I+E+ G+ H K +
Sbjct: 300 LIKRPDLKYQLGFSVQNGIICSLMRGGIAERG-GVRVGHRIIEINGQSVVATAHEKIVQA 358
Query: 88 LRLTP 92
L +
Sbjct: 359 LSNSV 363
Score = 57.7 bits (138), Expect = 2e-10
Identities = 10/61 (16%), Positives = 26/61 (42%)
Query: 41 MKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPT 100
+ +++ ++ G AA+ +L GDQI+ + G + A ++ + +
Sbjct: 230 ILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLN 289
Query: 101 V 101
+
Sbjct: 290 I 290
>2opg_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 1.50A
{Homo sapiens}
Length = 98
Score = 65.0 bits (159), Expect = 1e-14
Identities = 28/52 (53%), Positives = 36/52 (69%)
Query: 43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK 94
G I++H++Y EGAA KD RL GDQILE+ G D R TH +A+ LR TP +
Sbjct: 30 GAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQR 81
Score = 53.1 bits (128), Expect = 4e-10
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
G A DGRL GDQI+ V+G D+R + +E +++
Sbjct: 38 YEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLR 76
Score = 26.5 bits (59), Expect = 2.2
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 144 VELTKKAGKGFGLSLVGRKQGP--GVFISDLV 173
+E+ K G GLS+VG + I ++
Sbjct: 8 IEI-SKGRTGLGLSIVGGSDTLLGAIIIHEVY 38
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated
to tight junctions, PATJ; NMR {Homo sapiens}
Length = 116
Score = 65.5 bits (160), Expect = 1e-14
Identities = 28/52 (53%), Positives = 37/52 (71%)
Query: 43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK 94
I++H++Y EGAAA+D RL GDQILE+ G D RN +H +A+ LR TP K
Sbjct: 43 NAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTPQK 94
Score = 53.9 bits (130), Expect = 3e-10
Identities = 19/41 (46%), Positives = 25/41 (60%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
G AA DGRL GDQI+ V+G D+R+ S EE T ++
Sbjct: 51 YEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQT 91
Score = 26.6 bits (59), Expect = 2.5
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 140 EFVDVELTKKAGKGFGLSLVGRKQGP--GVFISDLV 173
+ + +E+ K G GLS+VG K P + I ++
Sbjct: 17 QEMIIEI-SKGRSGLGLSIVGGKDTPLNAIVIHEVY 51
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; PDZ domain, ATP-binding, cell junction, cell
membrane; NMR {Homo sapiens} PDB: 2kpl_A
Length = 129
Score = 64.8 bits (158), Expect = 3e-14
Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 9/78 (11%)
Query: 43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTP---------A 93
+ + + +G AA D +++ GD I+ + THA+ + + P
Sbjct: 43 EFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELC 102
Query: 94 KAKPCPTVPSEPNANATT 111
+ P P P +PN + T
Sbjct: 103 RGYPLPFDPDDPNTSLVT 120
Score = 53.6 bits (129), Expect = 6e-10
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
V G AA DG++ GD I+SV+ T V + +V I +
Sbjct: 51 VLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQS 90
Score = 31.7 bits (72), Expect = 0.043
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 140 EFVDVELTKKAGKGFGLSLVGRKQ-GPGVFISDLV 173
+F+ +L +K+ +GFG ++VG + + I LV
Sbjct: 18 KFIHTKL-RKSSRGFGFTVVGGDEPDEFLQIKSLV 51
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ
tandem, alternative splicing, cell junction, cytoplasm;
2.30A {Rattus norvegicus}
Length = 200
Score = 66.3 bits (162), Expect = 3e-14
Identities = 26/141 (18%), Positives = 43/141 (30%), Gaps = 38/141 (26%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTV 101
G V ++ G AA+ +L GD I + G + H + ++ L+
Sbjct: 32 DGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKNVGE-------- 83
Query: 102 PSEPNANATTGEKTTFYFHFQVKLVVLRDTVTKEDDLLE----FVDVELTKKAGKGFGLS 157
+V L V + V+V L K G FG
Sbjct: 84 --------------------RVVLEVEYELPPVSIQGSSVMFRTVEVTL-HKEGNTFGFV 122
Query: 158 LVG-----RKQGPGVFISDLV 173
+ G R + V I+ +
Sbjct: 123 IRGGAHDDRNKSRPVVITCVR 143
Score = 53.2 bits (128), Expect = 2e-09
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTP 92
+++ + P G A ++ +K GD++L + G THA+AM+ L+
Sbjct: 136 PVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCG 184
Score = 53.2 bits (128), Expect = 2e-09
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
GGIAA +L GD I +V+G ++ +E+ +++K
Sbjct: 41 RQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLK 79
Score = 50.5 bits (121), Expect = 2e-08
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
PGG A +G + GD+++SVDG + + E +I+K
Sbjct: 143 RPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQ 182
Score = 34.7 bits (80), Expect = 0.008
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 144 VELTKKAGKGFGLSLVGRK-QGPGVFISDLVS 174
VEL KK G GL++ G + +S+L
Sbjct: 11 VELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQ 42
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor
(LCF), structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.2
Length = 119
Score = 64.4 bits (157), Expect = 4e-14
Identities = 17/79 (21%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK----- 96
I VH ++P G A+++ ++ G+++L + G+ + TH A+A LR +
Sbjct: 41 NKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVT 100
Query: 97 ---PCPTVPSEPNANATTG 112
+P ++ ++G
Sbjct: 101 RKLTPEAMPDLNSSGPSSG 119
Score = 54.4 bits (131), Expect = 2e-10
Identities = 9/40 (22%), Positives = 25/40 (62%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
P G+A+ +G + KG++++S++G ++ + + I++
Sbjct: 50 FPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQ 89
Score = 28.6 bits (64), Expect = 0.51
Identities = 8/33 (24%), Positives = 12/33 (36%), Gaps = 2/33 (6%)
Query: 144 VELTKKAGKGFGLSLVGRKQGP--GVFISDLVS 174
L K+ G G G SL G + + +
Sbjct: 19 TILHKEEGAGLGFSLAGGADLENKVITVHRVFP 51
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand,
cytoplasm, developmental protein, phosphoprotein, WNT
signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A
3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A*
1mc7_A
Length = 108
Score = 63.6 bits (155), Expect = 6e-14
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKP 97
GGI + I GA A D R++ GD +L++ +F N+++ A+ LR K P
Sbjct: 32 DGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHKPGP 87
Score = 52.0 bits (125), Expect = 1e-09
Identities = 10/39 (25%), Positives = 22/39 (56%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
+ GG A DGR+ GD ++ V+ + + S ++ +++
Sbjct: 41 MKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLR 79
Score = 34.7 bits (80), Expect = 0.003
Identities = 8/38 (21%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 139 LEFVDVELTKKAGKGFGLSLVGRKQGP---GVFISDLV 173
+ + V L + G+S+VG+ G++I ++
Sbjct: 4 MNIITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIM 41
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 124
Score = 63.6 bits (155), Expect = 8e-14
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
+ I V I PEG AA D R++ GD++LE+ + +H A A ++ P+K K
Sbjct: 50 RMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPSKVK 104
Score = 52.8 bits (127), Expect = 1e-09
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
P G AA DGR+ GD+++ ++ + +S + + I+K
Sbjct: 59 NPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTA 99
Score = 27.8 bits (62), Expect = 0.99
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 140 EFVDVELTKKAGKGFGLSLVGRKQGP--GVFISDLV 173
E +EL +K G GLSL G K +F+ +
Sbjct: 25 ELHIIEL-EKDKNGLGLSLAGNKDRSRMSIFVVGIN 59
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 123
Score = 63.6 bits (155), Expect = 9e-14
Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 9/78 (11%)
Query: 43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTP---------A 93
+ V + P+G AA+D +++ GD I+ + THA + + P
Sbjct: 44 EFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLC 103
Query: 94 KAKPCPTVPSEPNANATT 111
+ P P P +P + +
Sbjct: 104 RGYPLPFDPEDPANSGPS 121
Score = 53.6 bits (129), Expect = 5e-10
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
+P G AA DG++ GD I+ ++ V + +V + +
Sbjct: 52 IPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQS 91
Score = 31.6 bits (72), Expect = 0.045
Identities = 8/35 (22%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 140 EFVDVELTKKAGKGFGLSLVGRKQ-GPGVFISDLV 173
F+ L KK+ GFG +++G + + + ++
Sbjct: 19 TFLSTTL-KKSNMGFGFTIIGGDEPDEFLQVKSVI 52
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics,
PDZ domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB:
2koh_A 2k1z_A 2k20_A
Length = 127
Score = 63.7 bits (155), Expect = 9e-14
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCP 99
GI + I GAA KD RL+ DQ++ + GE ++ +AM LR + +
Sbjct: 55 LGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIR 111
Score = 52.5 bits (126), Expect = 1e-09
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
+ GG A DGRL DQ+++V+G + KS E ++
Sbjct: 63 IHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLR 101
Score = 30.9 bits (70), Expect = 0.079
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
Query: 131 TVTKEDDLLEFVDVELTKKAGKGFGLSLVGRKQGP-----GVFISDLV 173
++ E +++ L G G+SL G K G+FI ++
Sbjct: 16 ALSLESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSII 63
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 63.1 bits (154), Expect = 1e-13
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK-----AK 96
K GI V + GAA +D R++ DQI+E+ G +T A LR T +
Sbjct: 39 KLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGR 98
Query: 97 PCPTVPS 103
P+ PS
Sbjct: 99 EKPSGPS 105
Score = 52.7 bits (127), Expect = 7e-10
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
GG A DGR+ DQI+ VDG + +Q AT+++
Sbjct: 48 TEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNT 88
Score = 30.4 bits (69), Expect = 0.11
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 8/48 (16%)
Query: 133 TKEDDLLEFVDVELTKKAGKGFGLSLVGRKQG-------PGVFISDLV 173
+ LE VEL +K G G+S++G G G+F+ +
Sbjct: 2 SSGSSGLELFPVEL-EKDEDGLGISIIGMGVGADAGLEKLGIFVKTVT 48
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural
proteomics in europe, spine, structural genomics,
hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 108
Score = 62.7 bits (153), Expect = 1e-13
Identities = 20/55 (36%), Positives = 28/55 (50%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
GGI V + P+GAA D R+ GD++L + G TH +A+ LR T
Sbjct: 41 HGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVH 95
Score = 52.3 bits (126), Expect = 9e-10
Identities = 11/41 (26%), Positives = 25/41 (60%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
+P G A +DGR+ KGD++++V+G + + ++ ++
Sbjct: 50 IPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNT 90
Score = 25.8 bits (57), Expect = 4.1
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 140 EFVDVELTKKAGKGFGLSLVGRKQGPGV 167
+ +VEL K G+S+ GV
Sbjct: 9 DIFEVEL-AKNDNSLGISVTVLFDKGGV 35
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 111
Score = 62.8 bits (153), Expect = 1e-13
Identities = 17/63 (26%), Positives = 28/63 (44%)
Query: 30 RDKSQEEVATIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
GI + + P GAA +D RL+ G ++LE+ + +TH +A+ LR
Sbjct: 31 ARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLR 90
Query: 90 LTP 92
Sbjct: 91 SVG 93
Score = 51.6 bits (124), Expect = 2e-09
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
P G A DGRL G +++ V+ + + E +++
Sbjct: 52 SPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLR 90
Score = 29.6 bits (67), Expect = 0.21
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 10/44 (22%)
Query: 140 EFVDVELTKKAGKGFGLSLVGRKQGP----------GVFISDLV 173
++ + K G+ G+S+ G +G G+FIS +
Sbjct: 9 GLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVS 52
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, unknown function; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 62.7 bits (153), Expect = 1e-13
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK-----AK 96
G+ + + P AA D RL GD+ILE+ G + + +A+ +R K AK
Sbjct: 35 APGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAK 94
Query: 97 PCPTVPSEPNANATTG 112
+ ++ ++G
Sbjct: 95 SDVETAKKIHSGPSSG 110
Score = 53.9 bits (130), Expect = 3e-10
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
+PG AA DGRL GD+I+ V+G+ + +++ G
Sbjct: 44 LPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHG 84
Score = 29.6 bits (67), Expect = 0.19
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Query: 140 EFVDVELTKKAGKGFGLSLVGRKQG----PGVFISDLV 173
VEL ++ G G+ L+ PG++I L+
Sbjct: 8 YVFTVEL-ERGPSGLGMGLIDGMHTHLGAPGLYIQTLL 44
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Length = 118
Score = 62.9 bits (153), Expect = 2e-13
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKA 95
G ++V +Y GAA + + GD+I+ + G+ + T A+A A L+ +
Sbjct: 43 GKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQG 95
Score = 52.8 bits (127), Expect = 7e-10
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
GG A G ++KGD+IM+++G V D + E ++
Sbjct: 51 YEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQ 89
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction,
membrane, phosphorylati domain, protein binding; 1.70A
{Homo sapiens} PDB: 2jwe_A 2osg_A
Length = 81
Score = 61.5 bits (150), Expect = 2e-13
Identities = 16/66 (24%), Positives = 31/66 (46%)
Query: 29 VRDKSQEEVATIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHL 88
V+ + EE + I V +I + AA+D ++ GD +L++ G N++ A +
Sbjct: 7 VKSRKNEEYGLRLASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLI 66
Query: 89 RLTPAK 94
+ K
Sbjct: 67 ERSKGK 72
Score = 52.3 bits (126), Expect = 6e-10
Identities = 10/41 (24%), Positives = 22/41 (53%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
+AA DG + +GD ++ ++GT + S + T+++
Sbjct: 29 SQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERS 69
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR
{Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A
1vj6_A 1gm1_A 1ozi_A
Length = 96
Score = 61.8 bits (151), Expect = 2e-13
Identities = 20/55 (36%), Positives = 28/55 (50%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
GGI V + P+GAA D R+ GD++L + G TH +A+ LR T
Sbjct: 32 HGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVH 86
Score = 52.6 bits (127), Expect = 5e-10
Identities = 11/41 (26%), Positives = 25/41 (60%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
+P G A +DGR+ KGD++++V+G + + ++ ++
Sbjct: 41 IPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNT 81
Score = 29.1 bits (66), Expect = 0.23
Identities = 8/38 (21%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 140 EFVDVELTKKAGKGFGLSLVGRK----QGPGVFISDLV 173
+ +VEL K G+S+ G + G+++ ++
Sbjct: 5 DIFEVEL-AKNDNSLGISVTGGVNTSVRHGGIYVKAVI 41
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane
protein 25, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 120
Score = 62.5 bits (152), Expect = 2e-13
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKA----KPCP 99
GI V I GAAA D RL+ GD+IL + G+D +N+ H A+ R +
Sbjct: 48 GIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRL 107
Query: 100 TVPSEPNANATTG 112
V + P + ++G
Sbjct: 108 QVQNGPISGPSSG 120
Score = 51.7 bits (124), Expect = 2e-09
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
G AA DGRL +GD+I+SV+G D+++ ++ + +
Sbjct: 55 KENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNA 95
Score = 28.6 bits (64), Expect = 0.51
Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 7/46 (15%)
Query: 134 KEDDLLEFVDVELTKKAGKGFGLSLVG------RKQGPGVFISDLV 173
+ D L+ ++ LT+ G G ++VG G+++S +
Sbjct: 11 RVDYLVTEEEINLTRGPS-GLGFNIVGGTDQQYVSNDSGIYVSRIK 55
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain,
structural genomics, structural genom consortium, SGC,
phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 62.4 bits (152), Expect = 2e-13
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
I V I GAA KD RL+ GD++L + +TH +A+A L+ T
Sbjct: 55 SIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVY 107
Score = 53.9 bits (130), Expect = 3e-10
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
+ GG A DGRL GD+++ V+ + + + EE I+K
Sbjct: 62 IDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNT 102
Score = 27.0 bits (60), Expect = 1.9
Identities = 8/41 (19%), Positives = 19/41 (46%), Gaps = 7/41 (17%)
Query: 139 LEFVDVELTKKAGKGFGLSLVGRKQGP------GVFISDLV 173
+ V+++L K KG G S+ G ++++ ++
Sbjct: 23 MTVVEIKL-FKGPKGLGFSIAGGVGNQHIPGDNSIYVTKII 62
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell
adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A*
1t2m_A 2ain_A
Length = 106
Score = 62.0 bits (151), Expect = 2e-13
Identities = 17/51 (33%), Positives = 24/51 (47%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTP 92
K GI V + GAA D RL GDQ+L + G ++ +A + T
Sbjct: 37 KLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTS 87
Score = 55.8 bits (135), Expect = 5e-11
Identities = 20/39 (51%), Positives = 24/39 (61%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
V GG A DGRL GDQ++SVDG + SQE A +M
Sbjct: 46 VKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMT 84
Score = 27.3 bits (61), Expect = 1.4
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 144 VELTKKAGKGFGLSLVGRKQGP----GVFISDLV 173
+ +T K G GLS+V K G+++ +V
Sbjct: 13 ITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVV 46
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1
interacting protein 1, activin receptor interacting
protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 61.6 bits (150), Expect = 3e-13
Identities = 16/53 (30%), Positives = 33/53 (62%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
+ V + +G A ++ R++ GDQI+E+ GE R++THA+A+ ++ + +
Sbjct: 37 DLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVR 89
Score = 50.8 bits (122), Expect = 4e-09
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
G A +GR+ GDQI+ ++G RD + ++K G
Sbjct: 44 AEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSG 84
Score = 30.0 bits (68), Expect = 0.15
Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 140 EFVDVELTKKAGKGFGLSLV-GRKQGPGVFISDLV 173
++ V++ +K KGFG S+ GR+ +++ L
Sbjct: 11 DYFTVDM-EKGAKGFGFSIRGGREYKMDLYVLRLA 44
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics,
alternative splicing, cell cycle, cell division, cell
junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Length = 111
Score = 61.6 bits (150), Expect = 4e-13
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKA------ 95
I V +I P GAA +D RLK GD+++E+ G D + + ++ LR T +
Sbjct: 38 SAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLV 97
Query: 96 --KPCPTVPSEPNA 107
+ P E NA
Sbjct: 98 FRQEEAFHPREMNA 111
Score = 56.6 bits (137), Expect = 3e-11
Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
+P G A DGRL GD+++ V+G D+ KSQEEV ++++
Sbjct: 47 LPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLR 85
Score = 28.8 bits (65), Expect = 0.43
Identities = 7/38 (18%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 140 EFVDVELTKKAGKGFGLSLVGRKQGP----GVFISDLV 173
+ ++++L KK +G G S+ R +++ +++
Sbjct: 11 KRLNIQL-KKGTEGLGFSITSRDVTIGGSAPIYVKNIL 47
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal
transduction, structural genom structural genomics
consortium, SGC, signaling protein; 1.85A {Homo
sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A
1iu0_A 1iu2_A
Length = 102
Score = 61.2 bits (149), Expect = 4e-13
Identities = 17/55 (30%), Positives = 26/55 (47%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
GI + I P GAAA D RL D +L + D + H++A+ L+ +
Sbjct: 33 DPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKEAGPVVR 87
Score = 51.6 bits (124), Expect = 2e-09
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
+PGG AA DGRL D ++ V+ DV + +K
Sbjct: 42 IPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKEA 82
Score = 28.8 bits (65), Expect = 0.36
Identities = 9/40 (22%), Positives = 20/40 (50%), Gaps = 7/40 (17%)
Query: 140 EFVDVELTKKAGKGFGLSLVGRK------QGPGVFISDLV 173
++ ++ L ++ G G S+ G PG+FI+ ++
Sbjct: 4 KYEEIVL-ERGNSGLGFSIAGGIDNPHVPDDPGIFITKII 42
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti
density, glutametergic receptors, carbohydrate
metabolism, cycle, cell division; HET: MES; 1.85A
{Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Length = 170
Score = 63.0 bits (153), Expect = 4e-13
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
K GI V + GAA +D R++ D ++E+ G +T + A + LR T + +
Sbjct: 110 KLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVR 164
Score = 53.4 bits (128), Expect = 1e-09
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
GG A DGR+ D ++ VDGT + +Q A++++
Sbjct: 119 TEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNT 159
Score = 29.9 bits (67), Expect = 0.28
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 8/50 (16%)
Query: 131 TVTKEDDLLEFVDVELTKKAGKGFGLSLVGRKQG-------PGVFISDLV 173
+ K + LE VEL K +G G+S++G G G+F+ +
Sbjct: 71 ELEKRVERLELFPVELEKD-SEGLGISIIGMGAGADMGLEKLGIFVKTVT 119
>2awx_A Synapse associated protein 97; membrane protein, synaptic
signaling, trafficking protein; HET: HIS; 1.80A {Rattus
norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Length = 105
Score = 61.2 bits (149), Expect = 4e-13
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
I V I GAA KD +L+ GD++L + +TH +A+ L+ T
Sbjct: 34 SIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNTSDFVY 86
Score = 51.2 bits (123), Expect = 3e-09
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
+ GG A DG+L GD++++V+ + + + EE T +K
Sbjct: 41 IEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNT 81
Score = 27.3 bits (61), Expect = 1.3
Identities = 7/40 (17%), Positives = 19/40 (47%), Gaps = 7/40 (17%)
Query: 140 EFVDVELTKKAGKGFGLSLVGRKQGP------GVFISDLV 173
+ ++++L K KG G S+ G ++++ ++
Sbjct: 3 KIMEIKL-IKGPKGLGFSIAGGVGNQHIPGDNSIYVTKII 41
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane,
mitochondria distribution, PDZ, membrane, scaffold,
mitochondrion, membrane protein; 1.35A {Homo sapiens}
PDB: 2jin_A
Length = 101
Score = 61.2 bits (149), Expect = 4e-13
Identities = 21/53 (39%), Positives = 28/53 (52%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
GI V I GAAA D RL+ GD+IL + G+D +N+ H A+ R
Sbjct: 38 GIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVS 90
Score = 51.9 bits (125), Expect = 1e-09
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
G AA DGRL +GD+I+SV+G D+++ ++ + +
Sbjct: 45 KENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNA 85
Score = 29.2 bits (66), Expect = 0.22
Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Query: 136 DDLLEFVDVELTKKAGKGFGLSLVG------RKQGPGVFISDLV 173
D L+ ++ LT+ G G ++VG G+++S +
Sbjct: 3 DYLVTEEEINLTRGPS-GLGFNIVGGTDQQYVSNDSGIYVSRIK 45
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein,
STXBP4 protein, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: b.36.1.1
Length = 109
Score = 61.3 bits (149), Expect = 5e-13
Identities = 13/54 (24%), Positives = 28/54 (51%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKP 97
+ +H++ P G KD RLK GDQ++ + E ++ +A + + +++
Sbjct: 42 LVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSES 95
Score = 55.9 bits (135), Expect = 6e-11
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
+PGG DGRL GDQ++S++ + S EE +I+
Sbjct: 49 IPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIIT 87
Score = 28.9 bits (65), Expect = 0.40
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 130 DTVTKEDDLLEFVDVELTKKAGKGFGLSLVG---RKQGPGVFISDLV 173
+ D V K G GL ++G R +GP V+I +++
Sbjct: 4 GSSGSPLDRDPAFRVITVTK-ETGLGLKILGGINRNEGPLVYIHEVI 49
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic
domain associated protein, structural genomics; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 61.3 bits (149), Expect = 5e-13
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
GI V I G AAK+ L+ D+I+E+ G D TH +A+ +
Sbjct: 40 SEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFK 87
Score = 51.6 bits (124), Expect = 2e-09
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
V G AA +G L D+I+ V+G D+ + ++ K
Sbjct: 49 VDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFK 87
Score = 25.0 bits (55), Expect = 9.1
Identities = 7/43 (16%), Positives = 17/43 (39%), Gaps = 10/43 (23%)
Query: 140 EFVDVELTKKAGKGFGLSLVG---------RKQGPGVFISDLV 173
+ + + L + G +++G G+F+S +V
Sbjct: 8 KSLTLVL-HRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIV 49
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex,
peptide binding protein; 1.54A {Rattus norvegicus}
SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Length = 119
Score = 61.3 bits (149), Expect = 5e-13
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
GI + I G A L+ GDQIL + G D RN +H +A L+
Sbjct: 37 GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALK 84
Score = 53.2 bits (128), Expect = 7e-10
Identities = 19/41 (46%), Positives = 26/41 (63%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
+ GG A G L KGDQI+SV+G D+R+ S E+ A +K
Sbjct: 46 LAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNA 86
Score = 34.7 bits (80), Expect = 0.004
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 130 DTVTKEDDLLEFVDVELTKKAGKGFGLSLVGRKQGPGVFISDLV 173
+ + +ED E + + + G G ++VG + G G+FIS ++
Sbjct: 4 EFLGEEDIPREPRRIVI-HRGSTGLGFNIVGGEDGEGIFISFIL 46
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Length = 108
Score = 61.2 bits (149), Expect = 5e-13
Identities = 14/55 (25%), Positives = 25/55 (45%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
GI V + P AAA D R++ D+IL + + + + + + LR +
Sbjct: 43 ATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLRNAGNPVR 97
Score = 53.1 bits (128), Expect = 5e-10
Identities = 14/39 (35%), Positives = 25/39 (64%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
+PG AA DGR+ D+I+ VD +V+ +Q +V +++
Sbjct: 52 IPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLR 90
Score = 27.3 bits (61), Expect = 1.5
Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 7/47 (14%)
Query: 134 KEDDLLEFVDVELTK-KAGKGFGLSLVG------RKQGPGVFISDLV 173
+ VEL + K G+S+ G + G+++ L+
Sbjct: 6 SDASGFSLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLI 52
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural
genomics, structural GEN consortium, SGC, structural
protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1
PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Length = 94
Score = 60.8 bits (148), Expect = 6e-13
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
I + I GAA KD RL+ GD++L + + +++ H +A+A L+ T
Sbjct: 34 SIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVY 86
Score = 50.8 bits (122), Expect = 3e-09
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
+ GG A DGRL GD++++V+ T+++D EE +K
Sbjct: 41 IEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNT 81
Score = 27.6 bits (62), Expect = 0.80
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 7/41 (17%)
Query: 139 LEFVDVELTKKAGKGFGLSLVGRKQGP------GVFISDLV 173
+ ++V L K KG G S+ G ++I+ ++
Sbjct: 2 MTIMEVNLLKGP-KGLGFSIAGGIGNQHIPGDNSIYITKII 41
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding
protein, membrane, sensory transduction, vision; 1.55A
{Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Length = 96
Score = 60.8 bits (148), Expect = 6e-13
Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 5/68 (7%)
Query: 41 MKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK-----A 95
+ G + D+ D++L+ GD I + G+ + + A + K
Sbjct: 29 NEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKGANGKVSMEVT 88
Query: 96 KPCPTVPS 103
+P P S
Sbjct: 89 RPKPAAAS 96
Score = 58.5 bits (142), Expect = 3e-12
Identities = 9/40 (22%), Positives = 16/40 (40%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
+ G D +L +GD I +G + + + KG
Sbjct: 39 IQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKG 78
Score = 43.5 bits (103), Expect = 2e-06
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 137 DLLEFVDVELTKKAGKGFGLSLVGRKQGPGVFISDLV 173
+ LE +V+L KKAGK GLSL + G I+DL+
Sbjct: 5 NSLEKFNVDLMKKAGKELGLSLSPNE--IGCTIADLI 39
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated
to tight junctions, PATJ; NMR {Homo sapiens}
Length = 111
Score = 60.8 bits (148), Expect = 6e-13
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
G++V I P G A +D RL+ GD IL++ G + + +T + LR +
Sbjct: 38 SGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNCGNSVR 91
Score = 56.6 bits (137), Expect = 3e-11
Identities = 18/41 (43%), Positives = 28/41 (68%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
VPGG+A DGRL GD I+ + GT+V+ + E+VA +++
Sbjct: 46 VPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNC 86
Score = 31.2 bits (71), Expect = 0.052
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 140 EFVDVELTKKAGKGFGLSLVGRKQGPGVFISDLV 173
+VEL G G G +VG K GV + +V
Sbjct: 15 HVEEVEL-INDGSGLGFGIVGGK-TSGVVVRTIV 46
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell
junction, membrane, phosphoprot domain, tight junction,
transmembrane; 2.40A {Homo sapiens}
Length = 92
Score = 60.5 bits (147), Expect = 6e-13
Identities = 16/66 (24%), Positives = 30/66 (45%)
Query: 29 VRDKSQEEVATIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHL 88
V+ EE + I V +I + AA+D ++ GD +L++ G N++ A +
Sbjct: 9 VKSAKNEEYGLRLASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLI 68
Query: 89 RLTPAK 94
+ K
Sbjct: 69 ERSKGK 74
Score = 51.6 bits (124), Expect = 1e-09
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
+AA DG + +GD ++ ++GT + S + T+++
Sbjct: 31 SQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIER 70
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI,
structural genomics, alternative splicing, cell cycle,
cell division, cell junction; NMR {Homo sapiens}
Length = 121
Score = 61.3 bits (149), Expect = 7e-13
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK 94
I V +I P GAA +D RLK GD+++E+ G D + + ++ LR T +
Sbjct: 57 SAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKME 109
Score = 57.4 bits (139), Expect = 2e-11
Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
+P G A DGRL GD+++ V+G D+ KSQEEV ++++
Sbjct: 66 LPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLR 104
Score = 29.3 bits (66), Expect = 0.29
Identities = 7/48 (14%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 130 DTVTKEDDLLEFVDVELTKKAGKGFGLSLVGRKQGP----GVFISDLV 173
+ + ++++L KK +G G S+ R +++ +++
Sbjct: 20 QGSYNTKKIGKRLNIQL-KKGTEGLGFSITSRDVTIGGSAPIYVKNIL 66
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3,
DLG3-human presynaptic protein, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 113
Score = 60.8 bits (148), Expect = 7e-13
Identities = 19/48 (39%), Positives = 25/48 (52%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
GI V I G A L+ GD+IL + G + RN TH +A A L+
Sbjct: 38 GEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALK 85
Score = 52.4 bits (126), Expect = 1e-09
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
+ GG A G L +GD+I+SV+G ++R+ + E+ A +K
Sbjct: 47 LAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRA 87
Score = 34.7 bits (80), Expect = 0.003
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 135 EDDLLEFVDVELTKKAGKGFGLSLVGRKQGPGVFISDLV 173
D E + L K G G ++VG + G G+F+S ++
Sbjct: 10 GGDAREPRKIIL-HKGSTGLGFNIVGGEDGEGIFVSFIL 47
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural
genomics, structural genomics consortium, SGC,
metal-binding; 1.75A {Homo sapiens}
Length = 118
Score = 60.9 bits (148), Expect = 7e-13
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTP 92
I V + P G ++D R+K GD +L + G + ++ ++A+A L+ T
Sbjct: 52 DLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRTS 102
Score = 54.7 bits (132), Expect = 2e-10
Identities = 14/39 (35%), Positives = 26/39 (66%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
PGG+ + DGR+ GD +++VDG ++ + S+ E ++K
Sbjct: 61 EPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLK 99
Score = 31.6 bits (72), Expect = 0.053
Identities = 5/34 (14%), Positives = 14/34 (41%), Gaps = 4/34 (11%)
Query: 144 VELTKKAGKGFGLSLVGRKQGP----GVFISDLV 173
V + K G+ G+++ G +++ +
Sbjct: 28 VNIQKDPGESLGMTVAGGASHREWDLPIYVISVE 61
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 105
Score = 60.8 bits (148), Expect = 7e-13
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
GI V I GAA + L+ GD++L + G D H A++ L
Sbjct: 39 GIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLT 84
Score = 50.4 bits (121), Expect = 5e-09
Identities = 11/41 (26%), Positives = 21/41 (51%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
GG A G L GD+++S++G DV + + +++
Sbjct: 46 AEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAA 86
Score = 25.0 bits (55), Expect = 7.8
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 8/37 (21%)
Query: 144 VELTKKAGKGFGLSLVG-------RKQGPGVFISDLV 173
L ++ +G G S+ G R G+F+S +
Sbjct: 11 ACL-ARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIA 46
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1,
HOST-virus interaction, structural genomics consortium,
synaptosome, tight junction; 1.35A {Homo sapiens}
Length = 97
Score = 60.4 bits (147), Expect = 9e-13
Identities = 17/55 (30%), Positives = 26/55 (47%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
GI V I A D R++ GDQI+ + G + + T+ +A+ LR T
Sbjct: 32 PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVL 86
Score = 51.5 bits (124), Expect = 2e-09
Identities = 11/41 (26%), Positives = 23/41 (56%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
DGR+ GDQI++VDGT+++ + ++ +++
Sbjct: 41 TKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 81
Score = 28.8 bits (65), Expect = 0.31
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
Query: 140 EFVDVELTKKAGKGFGLSLVG-----RKQGPGVFISDLV 173
E DVELTK +G G+++ G + + G+F+ +
Sbjct: 4 ETFDVELTKN-VQGLGITIAGYIGDKKLEPSGIFVKSIT 41
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission,
protein binding; NMR {Rattus norvegicus}
Length = 113
Score = 60.5 bits (147), Expect = 9e-13
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK-----AK 96
K GI V + GAA +D R++ D ++E+ G +T + A + LR T + +
Sbjct: 34 KLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGR 93
Query: 97 PCPTVPSEP 105
P SE
Sbjct: 94 ERPGEQSEV 102
Score = 52.4 bits (126), Expect = 1e-09
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
GG A DGR+ D ++ VDGT + +Q A++++
Sbjct: 43 TEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNT 83
Score = 30.4 bits (69), Expect = 0.11
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 8/42 (19%)
Query: 139 LEFVDVELTKKAGKGFGLSLVGRKQG-------PGVFISDLV 173
+E VEL +K +G G+S++G G G+F+ +
Sbjct: 3 MELFPVEL-EKDSEGLGISIIGMGAGADMGLEKLGIFVKTVT 43
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1;
endoplasmic reticulum, postsynaptic membrane, membrane,
MEMB protein; 1.5A {Homo sapiens}
Length = 97
Score = 59.9 bits (146), Expect = 9e-13
Identities = 15/53 (28%), Positives = 29/53 (54%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
+++ + P G A ++ +K GD++L + G THA+AM+ L+ +A
Sbjct: 33 PVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEAA 85
Score = 53.0 bits (128), Expect = 5e-10
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
PGG A +G + GD+++SVDG + + E +I+K
Sbjct: 40 RPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILK 78
Score = 29.1 bits (66), Expect = 0.23
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 6/40 (15%)
Query: 139 LEFVDVELTKKAGKGFGLSLVG-----RKQGPGVFISDLV 173
+ V+V L K G FG + G R + V I+ +
Sbjct: 2 MRTVEVTL-HKEGNTFGFVIRGGAHDDRNKSRPVVITSVR 40
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane,
HOST- interaction, structural genomics consortium,
synaptosome, T junction; 1.80A {Homo sapiens}
Length = 123
Score = 60.5 bits (147), Expect = 1e-12
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
GI + + + A K+ LK GD+I+E+ G D R+ +H +A+ +R
Sbjct: 60 GIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIR 105
Score = 51.7 bits (124), Expect = 2e-09
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
+ A +G L GD+I+ VDG D+RD S E+ ++
Sbjct: 67 LEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIR 105
Score = 32.0 bits (73), Expect = 0.040
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 10/57 (17%)
Query: 127 VLRDTVTKEDDLLEFVDVELTKKAGKGFGLSLVG----------RKQGPGVFISDLV 173
V T ++ VEL ++ K G+S+VG + G+FI ++
Sbjct: 11 VDLGTENLYFQSMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVL 67
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker,
structural genomics, struc genomics consortium, SGC,
structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 60.1 bits (146), Expect = 1e-12
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 30 RDKSQEEVATIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
R + GI + + + A K+ LK GD+I+E+ G D R+ +H +A+ +R
Sbjct: 26 RGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIR 85
Score = 50.8 bits (122), Expect = 3e-09
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
+ A +G L GD+I+ VDG D+RD S E+ ++
Sbjct: 47 LEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIR 85
Score = 29.6 bits (67), Expect = 0.18
Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 10/45 (22%)
Query: 139 LEFVDVELTKKAGKGFGLSLVG----------RKQGPGVFISDLV 173
++ VEL ++ K G+S+VG + G+FI ++
Sbjct: 3 MQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVL 47
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc,
LNX2_human, zinc-finger, polymorphism, ring finger
protein 1; 1.3A {Homo sapiens}
Length = 95
Score = 59.6 bits (145), Expect = 1e-12
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
G+ + D+ G AA+D RL D++L + G D + T A ++
Sbjct: 30 GVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQ 75
Score = 58.1 bits (141), Expect = 5e-12
Identities = 14/39 (35%), Positives = 27/39 (69%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
+ GG+AA DGRL D++++++G D++ + E A I++
Sbjct: 37 LEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQ 75
Score = 41.5 bits (98), Expect = 1e-05
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 139 LEFVDVELTKKA-GKGFGLSLVGRKQGPGVFISDLV 173
+E + V L K+ G+ G+ LV R PGVFI DL+
Sbjct: 2 MEILQVALHKRDSGEQLGIKLVRRTDEPGVFILDLL 37
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor,
PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Length = 130
Score = 60.6 bits (147), Expect = 1e-12
Identities = 11/51 (21%), Positives = 26/51 (50%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTP 92
+ ++ I+ A+ + ++ GD+IL+L G + +T +A ++ P
Sbjct: 56 DKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALP 106
Score = 54.0 bits (130), Expect = 4e-10
Identities = 9/41 (21%), Positives = 19/41 (46%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
G + + GD+I+ + GT ++ ++ E I+K
Sbjct: 65 FKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKAL 105
Score = 27.9 bits (62), Expect = 1.1
Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 5/38 (13%)
Query: 140 EFVDVELTKKAGKGFGLSLVGRKQGP----GVFISDLV 173
V L +K G G SL G K + I+ +
Sbjct: 29 TVCTVTL-EKMSAGLGFSLEGGKGSLHGDKPLTINRIF 65
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 93
Score = 59.6 bits (145), Expect = 1e-12
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
I + + P G A + LK GDQ+L + G H KA+ L+
Sbjct: 29 NSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLK 76
Score = 53.0 bits (128), Expect = 5e-10
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
+PGG+A G L +GDQ++SV+G V + E+ ++K
Sbjct: 38 IPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAA 78
Score = 28.4 bits (64), Expect = 0.51
Identities = 10/31 (32%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 144 VELTKKAGKGFGLSLVG-RKQGPGVFISDLV 173
VEL K +G G +++G ++Q ++IS ++
Sbjct: 9 VEL-PKTDEGLGFNIMGGKEQNSPIYISRVI 38
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated
to tight junctions, PATJ; NMR {Homo sapiens}
Length = 117
Score = 60.2 bits (146), Expect = 1e-12
Identities = 16/60 (26%), Positives = 31/60 (51%)
Query: 30 RDKSQEEVATIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
+ + GI + + + A K LK GD+ILE++G D +N +H++A+ ++
Sbjct: 37 QTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIK 96
Score = 50.9 bits (122), Expect = 5e-09
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
+ A L GD+I+ V G D+++ S E +K
Sbjct: 58 LEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKNA 98
Score = 30.5 bits (69), Expect = 0.13
Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 10/41 (24%)
Query: 143 DVELTKKAGKGFGLSLVGRK----------QGPGVFISDLV 173
VE+ ++ G+S+VG + + G+FI ++
Sbjct: 18 IVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVL 58
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.7A {Homo sapiens} PDB:
2iwp_A
Length = 120
Score = 60.1 bits (146), Expect = 1e-12
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
I + ++P G AA+ +L+ GD+I+ + G +TH +A+ L+
Sbjct: 54 PIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLK 99
Score = 53.5 bits (129), Expect = 6e-10
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
P G+AA +L GD+I+++ GT + + ++K
Sbjct: 61 HPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLK 99
Score = 33.1 bits (76), Expect = 0.015
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Query: 140 EFVDVELTKKAGKGFGLSLVGRKQGP----GVFISDLV 173
VE+ K G+S+ G P +FI+ +
Sbjct: 24 GLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMH 61
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; transferase, STRU genomics, structural genomics
consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo
sapiens}
Length = 112
Score = 59.7 bits (145), Expect = 2e-12
Identities = 13/53 (24%), Positives = 31/53 (58%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
+ V + +G A + +++ GD+ILE+ GE +N+ H++A+ ++ + +
Sbjct: 50 DLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKNGGRRVR 102
Score = 50.4 bits (121), Expect = 5e-09
Identities = 9/41 (21%), Positives = 19/41 (46%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
G A G++ GD+I+ ++G ++ ++K G
Sbjct: 57 AEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKNG 97
Score = 30.4 bits (69), Expect = 0.10
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 130 DTVTKEDDLLEFVDVELTKKAGKGFGLSLVG-RKQGPGVFISDLV 173
T ++F VEL ++ KGFG SL G R+ +++ L
Sbjct: 14 GTENLYFQSMDFYTVEL-ERGAKGFGFSLRGGREYNMDLYVLRLA 57
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide;
peptide binding protein; NMR {Drosophila melanogaster}
Length = 106
Score = 59.7 bits (145), Expect = 2e-12
Identities = 10/54 (18%), Positives = 20/54 (37%)
Query: 41 MKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK 94
+ G + D+ D++L+ GD I + G+ + A + K
Sbjct: 23 NEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGK 76
Score = 58.9 bits (143), Expect = 3e-12
Identities = 9/40 (22%), Positives = 16/40 (40%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
+ G D +L +GD I +G + + + KG
Sbjct: 33 IQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKG 72
Score = 44.3 bits (105), Expect = 1e-06
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 139 LEFVDVELTKKAGKGFGLSLVGRKQGPGVFISDLV 173
LE +V+L KKAGK GLSL + G I+DL+
Sbjct: 1 LEKFNVDLMKKAGKELGLSLSPNE--IGCTIADLI 33
>2fne_A Multiple PDZ domain protein; structural protein, structural
genomics, SGC, structural genomics consortium, unknown
function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 60.1 bits (146), Expect = 2e-12
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTP 92
I V ++ +GAA++D RLK GDQI+ + G+ +TH +A+A L+ T
Sbjct: 52 DLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTK 102
Score = 54.7 bits (132), Expect = 2e-10
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
G A+ DGRL +GDQI++V+G + + EE I+K
Sbjct: 61 FAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRT 101
Score = 29.2 bits (66), Expect = 0.30
Identities = 7/38 (18%), Positives = 16/38 (42%), Gaps = 5/38 (13%)
Query: 140 EFVDVELTKKAGKGFGLSLVGRKQGP----GVFISDLV 173
+ + L ++ G G S+VG P +++ +
Sbjct: 25 QCKSITL-ERGPDGLGFSIVGGYGSPHGDLPIYVKTVF 61
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 59.6 bits (145), Expect = 2e-12
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
+ V + +G A + RL+ GD +L + GE + +THA+A+ +R +
Sbjct: 39 PLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAGGPQLH 91
Score = 49.6 bits (119), Expect = 9e-09
Identities = 9/41 (21%), Positives = 19/41 (46%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
+ G A GRL GD ++ ++G + + + ++ G
Sbjct: 46 LKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAG 86
Score = 29.2 bits (66), Expect = 0.28
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Query: 140 EFVDVELTKKAGKGFGLSLVGRK---QGPGVFISDLV 173
VEL + GFGL+L G + + + L+
Sbjct: 11 GHFSVEL-VRGYAGFGLTLGGGRDVAGDTPLAVRGLL 46
>3e17_A Tight junction protein ZO-2; domain swapping, alternative
promoter usage, alternative splicing, cell junction,
cell membrane, disease mutation; 1.75A {Homo sapiens}
Length = 88
Score = 58.9 bits (143), Expect = 2e-12
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 29 VRDKSQEEVATIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHL 88
++ ++ EE + I V ++ G A KD L GD IL++ G N++ A +
Sbjct: 7 MKSRANEEYGLRLGSQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLI 66
Query: 89 R 89
Sbjct: 67 E 67
Score = 51.9 bits (125), Expect = 1e-09
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
G+A DG L +GD I+ ++GT + S + +++
Sbjct: 29 TRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEK 68
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative
splicing, cell junction, cell membrane, lipoprotein,
membrane, palmitate, phosphoprotein; 1.35A {Homo
sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Length = 104
Score = 59.2 bits (144), Expect = 2e-12
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
GI + I G A L+ GDQIL + G D RN +H +A L+
Sbjct: 34 GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALK 81
Score = 53.1 bits (128), Expect = 4e-10
Identities = 19/41 (46%), Positives = 26/41 (63%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
+ GG A G L KGDQI+SV+G D+R+ S E+ A +K
Sbjct: 43 LAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNA 83
Score = 34.6 bits (80), Expect = 0.003
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 131 TVTKEDDLLEFVDVELTKKAGKGFGLSLVGRKQGPGVFISDLV 173
+ +ED E + + + G G ++VG + G G+FIS ++
Sbjct: 2 GLGEEDIPREPRRIVI-HRGSTGLGFNIVGGEXGEGIFISFIL 43
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.40A {Homo sapiens}
Length = 92
Score = 58.8 bits (143), Expect = 3e-12
Identities = 22/51 (43%), Positives = 26/51 (50%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTP 92
G+ V DI G A D RL GDQIL + GED RN T A L+ +
Sbjct: 28 DTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSL 78
Score = 57.3 bits (139), Expect = 9e-12
Identities = 23/39 (58%), Positives = 31/39 (79%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
V GGIA DGRL++GDQI+ V+G DVR+ +QE VA ++K
Sbjct: 37 VKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLK 75
Score = 44.9 bits (107), Expect = 4e-07
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 140 EFVDVELTKKAGKGFGLSLVGRKQGPGVFISDLV 173
+ + + L KK GKG GLS+VG++ GVF+SD+V
Sbjct: 4 DTLTIGLQKKPGKGLGLSIVGKRNDTGVFVSDIV 37
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain,
RAB3-interacting molecule, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Length = 131
Score = 59.8 bits (145), Expect = 3e-12
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTV 101
+ + A L+ GD++LE G + T + + ++KP P V
Sbjct: 66 CAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIIL----ESKPEPQV 119
Score = 57.9 bits (140), Expect = 2e-11
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
G +A T G L GD+++ +G ++ + EEV I+
Sbjct: 73 KKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIIL 111
Score = 30.9 bits (70), Expect = 0.082
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Query: 140 EFVDVELTKKAGKGFGLSLVGRKQGP----GVFISDLV 173
D + + +G GL +VG K FI+ +
Sbjct: 36 RLKDGSVPRDSGAMLGLKVVGGKMTESGRLCAFITKVK 73
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated
to tight junctions, PATJ; NMR {Homo sapiens}
Length = 129
Score = 59.4 bits (144), Expect = 3e-12
Identities = 11/48 (22%), Positives = 22/48 (45%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
GI V + P AA + ++ D+I+ + G + + + + LR
Sbjct: 45 ASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLR 92
Score = 52.1 bits (125), Expect = 2e-09
Identities = 10/39 (25%), Positives = 24/39 (61%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
+PG A +G + D+I++VDG +++ + +V +++
Sbjct: 54 IPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLR 92
Score = 36.6 bits (85), Expect = 9e-04
Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 135 EDDLLEFVDVELTKKAGKGFGLSLVGRKQGP------GVFISDLV 173
+ L E +VEL +K G+ G+ +VG G+++ ++
Sbjct: 10 DSSLFETYNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVI 54
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS,
nitric oxide synthase, oxidoreductase; NMR {Rattus
norvegicus} SCOP: b.36.1.1
Length = 127
Score = 59.5 bits (144), Expect = 3e-12
Identities = 12/51 (23%), Positives = 25/51 (49%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTP 92
K +++ D+ GAA + ++ GD IL + ++++ A+ LR
Sbjct: 32 KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIA 82
Score = 54.9 bits (132), Expect = 2e-10
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
+ GG A G + GD I++V+ + D S + +++G
Sbjct: 41 IRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRG 80
Score = 42.9 bits (101), Expect = 5e-06
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 140 EFVDVELTKKAGKGFGLSLVGRKQGPGVFISDLV 173
+ V L K+ G G + R P V ISDL+
Sbjct: 8 NVISVRLFKRKVGGLGFLVKERVSKPPVIISDLI 41
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 1; Cys Ser mutant, S genomics consortium, SGC,
transferase; 2.00A {Homo sapiens}
Length = 90
Score = 58.4 bits (142), Expect = 3e-12
Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 16/80 (20%)
Query: 33 SQEEVATIMKG----------------GILVHDIYPEGAAAKDARLKFGDQILELTGEDF 76
S E+ + + I + I P GAA D RL+ GD+++ + G
Sbjct: 1 SMEQDIFLWRKETGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPV 60
Query: 77 RNITHAKAMAHLRLTPAKAK 96
+H + ++ +
Sbjct: 61 IGKSHQLVVQLMQQAAKQGH 80
Score = 56.5 bits (137), Expect = 2e-11
Identities = 21/39 (53%), Positives = 27/39 (69%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
VP G A TDGRL GD+++SVDGT V KS + V +M+
Sbjct: 35 VPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQ 73
Score = 29.9 bits (68), Expect = 0.10
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 143 DVELTKKAGKGFGLSLVGRK-QGPGVFISDLV 173
D+ L +K GFG ++G G ++I +V
Sbjct: 5 DIFLWRK-ETGFGFRILGGNEPGEPIYIGHIV 35
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger,
oxidoreductase; 1.25A {Rattus norvegicus} SCOP:
b.36.1.1 PDB: 1qav_B
Length = 112
Score = 58.6 bits (142), Expect = 5e-12
Identities = 12/51 (23%), Positives = 25/51 (49%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTP 92
K +++ D+ GAA + ++ GD IL + ++++ A+ LR
Sbjct: 25 KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIA 75
Score = 54.0 bits (130), Expect = 3e-10
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
+ GG A G + GD I++V+ + D S + +++G
Sbjct: 34 IRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRG 73
Score = 42.5 bits (100), Expect = 6e-06
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 142 VDVELTKKAGKGFGLSLVGRKQGPGVFISDLV 173
+ V L K+ G G + R P V ISDL+
Sbjct: 3 ISVRLFKRKVGGLGFLVKERVSKPPVIISDLI 34
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling
protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Length = 98
Score = 57.7 bits (140), Expect = 7e-12
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
GI + I P+ A RLK GD+IL L G+D RN T + ++
Sbjct: 38 GIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIK 83
Score = 51.5 bits (124), Expect = 2e-09
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
VP A GRL GD+I+S++G DVR+ +++ V ++K
Sbjct: 45 VPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIK 83
Score = 32.7 bits (75), Expect = 0.015
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 7/41 (17%)
Query: 140 EFVDVELTKKAGKGFGLSLVG-------RKQGPGVFISDLV 173
V L K K FG+ +V + G+FI +V
Sbjct: 5 LIHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIV 45
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer,
membrane protein-oxidoreductase CO; 1.90A {Mus
musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Length = 90
Score = 57.3 bits (139), Expect = 8e-12
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
K IL+ I+ AA + L GD IL + GED + TH +A+ L+
Sbjct: 29 KMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALK 76
Score = 48.0 bits (115), Expect = 2e-08
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
G A L GD I+SV+G D+ + +E +K
Sbjct: 38 FKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKT 78
Score = 33.0 bits (76), Expect = 0.011
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 144 VELTKKAGKGFGLSLVG-RKQGPGVFISDLV 173
V + K G G+S+ G R+ + IS +
Sbjct: 8 VTVRKADAGGLGISIKGGRENKMPILISKIF 38
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Length = 263
Score = 60.9 bits (147), Expect = 9e-12
Identities = 20/66 (30%), Positives = 30/66 (45%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTV 101
K IL+ I+ AA + L GD IL + GED + TH +A+ L+ T +
Sbjct: 102 KMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKY 161
Query: 102 PSEPNA 107
E +
Sbjct: 162 MKEVSP 167
Score = 49.7 bits (118), Expect = 7e-08
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
+ G A L GD I+SV+G D+ + +E +K
Sbjct: 109 KIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALK 149
Score = 34.7 bits (79), Expect = 0.010
Identities = 24/122 (19%), Positives = 40/122 (32%), Gaps = 16/122 (13%)
Query: 54 GAAAKDARLKFGDQILELTG-EDFRNITHAKAMAHLRLTPAKAKPCPTVPSEPNANATTG 112
A + L+ G E ++ + + A L ++PA +P P P N
Sbjct: 4 RRAPRTGLLELRCGAGSGAGGERWQRVLLSLAEDALTVSPADGEPGPE-PEPAQLNGAA- 61
Query: 113 EKTTFYFHFQVKLVVLRDTVTKEDDLLEFVDVELTKKAGKGFGLSLVG-RKQGPGVFISD 171
E LL+ V + K G G+S+ G R+ + IS
Sbjct: 62 ------------EPGAAPPQLPEALLLQRRRVTVRKADAGGLGISIKGGRENKMPILISK 109
Query: 172 LV 173
+
Sbjct: 110 IF 111
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain,
scaffolding protein signaling protein; 1.56A {Homo
sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A
1obz_A 1w9o_A 1w9q_A 1ybo_A
Length = 166
Score = 59.1 bits (143), Expect = 1e-11
Identities = 17/120 (14%), Positives = 38/120 (31%), Gaps = 36/120 (30%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG-------------------- 43
A+ G L GDQ++ ++G + S ++ ++K
Sbjct: 35 QANSPASLVG-LRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIRDRPFERTIT 93
Query: 44 --------------GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
+ I + +AA++ L I E+ G++ + ++ L
Sbjct: 94 MHKDSTGHVGFIFKNGKITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILS 152
Score = 50.2 bits (120), Expect = 2e-08
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
GI V + A+ L+FGDQ+L++ GE+ + KA L+
Sbjct: 27 NGIFVQLVQANSPASL-VGLRFGDQVLQINGENCAGWSSDKAHKVLK 72
Score = 29.0 bits (65), Expect = 0.48
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 143 DVELTKKAGKGFGLSLVGRKQGPGVFISDLVSE 175
+V L K GL L G+F+ + +
Sbjct: 7 EVILCKDQDGKIGLRLKSI--DNGIFVQLVQAN 37
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion;
1.99A {Homo sapiens} PDB: 3shu_A
Length = 124
Score = 57.9 bits (140), Expect = 1e-11
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPA 93
GI V + + AAK+ L+ GDQIL + DF NI +A+ L P
Sbjct: 52 GIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPK 100
Score = 46.7 bits (111), Expect = 2e-07
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
+ AA +G L +GDQI+ V+ D + +EE +
Sbjct: 59 LEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLD 97
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 57.3 bits (139), Expect = 1e-11
Identities = 15/71 (21%), Positives = 30/71 (42%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTV 101
IL+ + G+A +D RL GD+++ + G TH + + + TV
Sbjct: 33 GQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTV 92
Query: 102 PSEPNANATTG 112
+ + ++G
Sbjct: 93 RRKVLSGPSSG 103
Score = 56.2 bits (136), Expect = 4e-11
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
+ G A DGRL GD+++ VDG V K+ V +M
Sbjct: 42 IAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMH 80
Score = 30.4 bits (69), Expect = 0.10
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 140 EFVDVELTKKAGKGFGLSLVGRK-QGPGVFISDLV 173
+ +DV L + GFG ++G G + I ++
Sbjct: 9 KELDVHLRRMES-GFGFRILGGDEPGQPILIGAVI 42
>2i04_A Membrane-associated guanylate kinase, WW and PDZ
domain-containing protein 1; PDZ, E6 binding, tumor
suppressor, peptide binding protein; 2.15A {Mus
musculus}
Length = 85
Score = 56.9 bits (138), Expect = 1e-11
Identities = 11/50 (22%), Positives = 23/50 (46%)
Query: 43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTP 92
+ + + +G AA D +++ GD I+ + THA+ + + P
Sbjct: 25 EFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIP 74
Score = 53.4 bits (129), Expect = 2e-10
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
V G AA DG++ GD I+SV+ T V + +V I +
Sbjct: 33 VLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQS 72
Score = 31.1 bits (71), Expect = 0.048
Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 142 VDVELTKKAGKGFGLSLVGRKQ-GPGVFISDLV 173
+ +L +K+ +GFG ++VG + + I LV
Sbjct: 2 IHTKL-RKSSRGFGFTVVGGDEPDEFLQIKSLV 33
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing
isoform B; GOPC PDZ domain, structural protein; NMR
{Homo sapiens}
Length = 103
Score = 57.4 bits (139), Expect = 1e-11
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
IL+ +I+P A + L GD IL + G + R+ H +A+ L
Sbjct: 36 PILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILS 81
Score = 50.4 bits (121), Expect = 5e-09
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
PG A G L GD I++V+G ++RD +E TI+
Sbjct: 43 HPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILS 81
Score = 32.7 bits (75), Expect = 0.014
Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 144 VELTKKAGKGFGLSLVG-RKQGPGVFISDLV 173
V L K+ +G G+S+ G ++ G + IS++
Sbjct: 13 VLLLKEDHEGLGISITGGKEHGVPILISEIH 43
>2o2t_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 2.70A
{Homo sapiens}
Length = 117
Score = 57.8 bits (140), Expect = 1e-11
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDF-RNITHAKAMAHLRLTP 92
+ GI V +I A +D RLK DQIL + G+ + ITH +A++ L+
Sbjct: 48 ELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKAK 99
Score = 49.3 bits (118), Expect = 2e-08
Identities = 11/41 (26%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDV-RDKSQEEVATIMKG 43
G +A DGRL + DQI++++G + + + ++ +I++
Sbjct: 57 QEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQK 97
Score = 33.5 bits (77), Expect = 0.011
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 140 EFVDVELTKKAGKGFGLSLVGRKQGP----GVFISDLV 173
EL K G G S+VG + G+F+ ++
Sbjct: 20 HVEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQ 57
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein;
structural protein-hydrolase complex, peptide binding
protei; NMR {Homo sapiens}
Length = 112
Score = 57.5 bits (139), Expect = 1e-11
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
IL+ +I+P A + L GD IL + G + R+ H +A+ L
Sbjct: 52 GVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILS 99
Score = 51.7 bits (124), Expect = 2e-09
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
PG A G L GD I++V+G ++RD +E TI+
Sbjct: 61 HPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILS 99
Score = 33.6 bits (77), Expect = 0.008
Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 140 EFVDVELTKKAGKGFGLSLVG-RKQGPGVFISDLV 173
V L K+ +G G+S+ G ++ G + IS++
Sbjct: 27 GIRKVLLLKEDHEGLGISITGGKEHGVPILISEIH 61
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight
junction protein, protein associated to tight junctions,
PATJ, structural genomics; NMR {Homo sapiens}
Length = 128
Score = 57.5 bits (139), Expect = 2e-11
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDF-RNITHAKAMAHLRLTPAKAK 96
K I V D+ P A +D RLK DQIL + +NI+H +A+A L+ T +
Sbjct: 53 KVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQTTGSLR 108
Score = 51.3 bits (123), Expect = 4e-09
Identities = 11/40 (27%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDV-RDKSQEEVATIMK 42
PG +A D RL + DQI++++ T + ++ S ++ +++
Sbjct: 62 QPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQ 101
Score = 33.2 bits (76), Expect = 0.014
Identities = 6/50 (12%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Query: 128 LRDTVTKEDDLLEFVDVELTKKAGKGFGLSLVGRKQGP----GVFISDLV 173
+ + + +++ + + G G S+V + +F+ D+
Sbjct: 13 FNSVIQQMAQGRQIEYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDVQ 62
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 124
Score = 57.2 bits (138), Expect = 2e-11
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAM 85
GI + +I P AAKD R++ GD+I+++ G + +N A A+
Sbjct: 49 GIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNREEAVAL 90
Score = 47.9 bits (114), Expect = 8e-08
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
P IAA DGR+ +GD+I+ ++G +V+++ + +
Sbjct: 56 DPNSIAAKDGRIREGDRIIQINGIEVQNREEAVALLTSEEN 96
Score = 32.5 bits (74), Expect = 0.027
Identities = 10/39 (25%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 139 LEFVDVELTKKAGK-GFGLSLVGR---KQGPGVFISDLV 173
LE +V+L + + GL++ R + G++IS++
Sbjct: 18 LELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEID 56
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural
genomics, structura genomics consortium, SGC, signaling
protein; 1.12A {Homo sapiens} PDB: 2pku_A
Length = 114
Score = 56.7 bits (137), Expect = 3e-11
Identities = 8/46 (17%), Positives = 19/46 (41%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
+ + ++ AA D + GD+I + G + T + ++
Sbjct: 51 CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQ 96
Score = 51.3 bits (123), Expect = 3e-09
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
AA DG + GD+I V+G ++ K++ EVA +++
Sbjct: 58 FDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQ 96
Score = 30.5 bits (69), Expect = 0.094
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 144 VELTKKAGKGFGLSLVG-RKQGPGVFISDLVSE 175
V L K A G+S+ G + P ++I +
Sbjct: 28 VTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDN 60
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 56.3 bits (136), Expect = 4e-11
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
G + I P G+A + +L G Q+LE G + T+ + + +
Sbjct: 50 GAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIIS 95
Score = 56.3 bits (136), Expect = 4e-11
Identities = 14/39 (35%), Positives = 25/39 (64%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
+PGG A G+L++G Q++ +G + K+ EEV +I+
Sbjct: 57 LPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIIS 95
Score = 29.0 bits (65), Expect = 0.41
Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 6/37 (16%)
Query: 143 DVELTKKAGKGFGLSLVGRKQGP------GVFISDLV 173
D + +G G G+ +VG K+ P G +I+ ++
Sbjct: 21 DSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKIL 57
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune
enteropathy-related antigen AIE-75 ,antigen
NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2kbs_A
Length = 114
Score = 56.3 bits (136), Expect = 4e-11
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
K GI + + P +A+ L+ GDQI+E+ G DF N+ H +A+ L+
Sbjct: 40 KPGIFISHVKPGSLSAEV-GLEIGDQIVEVNGVDFSNLDHKEAVNVLK 86
Score = 42.5 bits (100), Expect = 6e-06
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 5 PGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
PG ++A G L GDQI+ V+G D + +E ++K
Sbjct: 50 PGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLKSS 88
Score = 32.5 bits (74), Expect = 0.022
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 144 VELTKKAGKGFGLSLV-GRKQGPGVFIS 170
V ++ +G G S+ G Q PG+FIS
Sbjct: 19 VFISLVGSRGLGCSISSGPIQKPGIFIS 46
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding;
1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Length = 97
Score = 55.8 bits (135), Expect = 5e-11
Identities = 9/48 (18%), Positives = 21/48 (43%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
I++ + G A + + GD+IL + + ++A+ L+
Sbjct: 29 FDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQ 76
Score = 51.9 bits (125), Expect = 1e-09
Identities = 9/43 (20%), Positives = 22/43 (51%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
GG+A G + GD+I++++ + ++ K E +++
Sbjct: 36 SLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMA 78
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 55.5 bits (134), Expect = 6e-11
Identities = 13/47 (27%), Positives = 19/47 (40%)
Query: 43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
+ I G+A +LK G ILE+ G R H +A +
Sbjct: 32 PLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIA 78
Score = 50.9 bits (122), Expect = 4e-09
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
GG A G+L G I+ V+G +R K E A I+
Sbjct: 38 TIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIA 78
Score = 25.8 bits (57), Expect = 4.7
Identities = 6/32 (18%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 144 VELTKKAGKGFGLSLVG--RKQGPGVFISDLV 173
+ KK+ G+++ G + P I +
Sbjct: 9 LVRVKKSAATLGIAIEGGANTRQPLPRIVTIQ 40
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated
to tight junctions, PATJ; NMR {Homo sapiens}
Length = 108
Score = 55.5 bits (134), Expect = 6e-11
Identities = 11/49 (22%), Positives = 24/49 (48%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTP 92
I++ + +G A + L GD+++ + N + A+A+ L+ P
Sbjct: 45 VIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVP 93
Score = 54.3 bits (131), Expect = 2e-10
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
V G+A G LL GD+++SV+ + + S E I+K
Sbjct: 52 VADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKA 91
Score = 27.7 bits (62), Expect = 0.98
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 6/39 (15%)
Query: 140 EFVDVELTKKAGKGFGLSLVGRKQGP-----GVFISDLV 173
E VEL K KG G S++ + + I LV
Sbjct: 15 EVKIVEL-VKDCKGLGFSILDYQDPLDPTRSVIVIRSLV 52
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 104
Score = 55.4 bits (134), Expect = 7e-11
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
GI + + P+ A + L+ GDQ+L + DF++I H+KA+ L+
Sbjct: 42 GIFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQDIEHSKAVEILK 86
Score = 42.7 bits (101), Expect = 4e-06
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 5 PGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
P A G L +GDQ+++V+ D +D + I+K
Sbjct: 50 PDSDAHRAG-LQEGDQVLAVNDVDFQDIEHSKAVEILKTA 88
Score = 33.5 bits (77), Expect = 0.009
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 144 VELTKKAGKGFGLSLV-GRKQGPGVFIS 170
V L K G G ++ G+ G+FIS
Sbjct: 19 VTLKKPPGAQLGFNIRGGKASQLGIFIS 46
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase,
protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Length = 125
Score = 55.9 bits (135), Expect = 7e-11
Identities = 8/46 (17%), Positives = 19/46 (41%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
+ + ++ AA D + GD+I + G + T + ++
Sbjct: 46 CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQ 91
Score = 52.5 bits (126), Expect = 1e-09
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
AA DG + GD+I V+G ++ K++ EVA +++
Sbjct: 53 FDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQ 91
Score = 32.4 bits (74), Expect = 0.026
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 140 EFVDVELTKKAGKGFGLSLVG-RKQGPGVFISDLV 173
V L K A G+S+ G + P ++I +
Sbjct: 19 VPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVF 53
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken
structural genomics/proteomics initiative, RSGI, protein
binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 55.5 bits (134), Expect = 8e-11
Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 6/77 (7%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPA----KAKP 97
K I + I P + L GD IL + G + + +A L + P
Sbjct: 41 KSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASISEKVRLEILP 100
Query: 98 CPTV--PSEPNANATTG 112
P P P++ ++G
Sbjct: 101 VPQSQRPLRPSSGPSSG 117
Score = 53.2 bits (128), Expect = 6e-10
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
R P + G L GD I+S+DGT + S E ++
Sbjct: 48 RIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLA 88
Score = 32.4 bits (74), Expect = 0.021
Identities = 12/46 (26%), Positives = 16/46 (34%), Gaps = 5/46 (10%)
Query: 130 DTVTKEDDLLEFVDVELTKKAGKGFGLSLVGRK--QGPGVFISDLV 173
DTV L VE+ K G G+SL + I +
Sbjct: 8 DTVANASGPL---MVEIVKTPGSALGISLTTTSLRNKSVITIDRIK 50
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 117
Score = 55.6 bits (134), Expect = 9e-11
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
KGGI V + A + L++GDQ+LE G + R+ T +A +
Sbjct: 41 KGGIYVSKVTVGSIAHQA-GLEYGDQLLEFNGINLRSATEQQARLIIG 87
Score = 45.5 bits (108), Expect = 5e-07
Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
G IA G L GDQ++ +G ++R ++++ I+
Sbjct: 50 TVGSIAHQAG-LEYGDQLLEFNGINLRSATEQQARLIIGQQ 89
Score = 27.8 bits (62), Expect = 1.1
Identities = 6/23 (26%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 148 KKAGKGFGLSLVGRKQGPGVFIS 170
+K + G+S+V + G+++S
Sbjct: 26 QKGSEPLGISIVSGE-KGGIYVS 47
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 101
Score = 54.7 bits (132), Expect = 1e-10
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
GI V + P A K+ L+ GDQIL + + +THA+A+ L+
Sbjct: 36 GIYVSLVEPGSLAEKE-GLRVGDQILRVNDKSLARVTHAEAVKALK 80
Score = 41.6 bits (98), Expect = 1e-05
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
PG +A +G L GDQI+ V+ + + E +KG
Sbjct: 43 EPGSLAEKEG-LRVGDQILRVNDKSLARVTHAEAVKALKGS 82
Score = 28.5 bits (64), Expect = 0.46
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 144 VELTK-KAGKGFGLSLVG-RKQGPGVFISDLV 173
V L + KA +G G S+ G + G G+++S +
Sbjct: 12 VSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVE 43
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 117
Score = 54.8 bits (132), Expect = 2e-10
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
I++ D+ P G A D L+ D+++ + G ++ H+ A+ LR + A
Sbjct: 47 SIVISDVLPGGPA--DGLLQENDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAA 97
Score = 43.6 bits (103), Expect = 2e-06
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
+PGG A DG L + D+++ V+GT + D ++
Sbjct: 54 LPGGPA--DGLLQENDRVVMVNGTPMEDVLHSFAVQQLR 90
Score = 35.1 bits (81), Expect = 0.003
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 7/46 (15%)
Query: 135 EDDLLEFVDVELTKKAGKGFGLSLVGRKQGP-------GVFISDLV 173
E+ + E V L K + +GFG+++ G + P + ISD++
Sbjct: 9 EEVIWEQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVL 54
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural
genomics, mouse cDNA, riken structural
genomics/proteomics initiative; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 126
Score = 54.9 bits (132), Expect = 2e-10
Identities = 11/57 (19%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 39 TIMKGG--ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPA 93
+++ G + + + +GAAA D L+ GD ++ + + T + + L+
Sbjct: 43 VVIQNGPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITI 99
Score = 53.3 bits (128), Expect = 7e-10
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
+ G AA+DG L GD ++SV +V + E +++
Sbjct: 57 INKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQN 96
Score = 29.4 bits (66), Expect = 0.26
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 140 EFVDVELTKKAGKGFGLSLVGRKQGPGVFISDLV 173
+ + +LT G GL ++ GP + IS L+
Sbjct: 27 KVIQTKLTVGN-LGLGLVVIQN--GPYLQISHLI 57
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high
affinity ligand, cell adhesio; 1.60A {Homo sapiens}
PDB: 2h2c_A 2h3m_A 2rrm_A
Length = 107
Score = 54.3 bits (131), Expect = 2e-10
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
I++ D+ G A + +L+ D++ + G N+ HA A+ LR + AK
Sbjct: 40 SIVISDVLKGGPA--EGQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAK 90
Score = 43.1 bits (102), Expect = 3e-06
Identities = 8/39 (20%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
+ GG A +G+L + D++ V+G + + ++
Sbjct: 47 LKGGPA--EGQLQENDRVAMVNGVSMDNVEHAFAVQQLR 83
Score = 32.3 bits (74), Expect = 0.022
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 7/41 (17%)
Query: 140 EFVDVELTKKAGKGFGLSLVG-------RKQGPGVFISDLV 173
E V L + G GFG+++ G + + ISD++
Sbjct: 7 EQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVL 47
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 128
Score = 54.4 bits (131), Expect = 2e-10
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
GI + + P A LK GDQILE+ G F NI H +A+ L+
Sbjct: 47 GIYITGVDPGSEAEGS-GLKVGDQILEVNGRSFLNILHDEAVRLLK 91
Score = 41.7 bits (98), Expect = 1e-05
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
PG A G L GDQI+ V+G + +E ++K
Sbjct: 52 GVDPGSEAEGSG-LKVGDQILEVNGRSFLNILHDEAVRLLKSS 93
Score = 32.9 bits (75), Expect = 0.018
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 144 VELTKKAGKGFGLSLVG-RKQGPGVFIS 170
V L G+ GL++ G + G G++I+
Sbjct: 24 VNLVLGDGRSLGLTIRGGAEYGLGIYIT 51
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 53.9 bits (130), Expect = 2e-10
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
GI + + EG AA+ ++ GD++LE+ G + H +A+ LR +
Sbjct: 47 GIFISRVSEEGPAARA-GVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQ 98
Score = 44.3 bits (105), Expect = 1e-06
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
G AA G + GD+++ V+G ++ E ++G
Sbjct: 54 SEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALRGA 93
Score = 27.3 bits (61), Expect = 1.3
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 8/41 (19%)
Query: 140 EFVDVELTKKAGKGFGLSLVG-------RKQGPGVFISDLV 173
E + + + ++ G G G+S+ G + G+FIS +
Sbjct: 15 EELTLTILRQTG-GLGISIAGGKGSTPYKGDDEGIFISRVS 54
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL
conjugation, leucine-rich repeat, alternative splicing,
cytoplasm, circletail, coiled coil; 1.30A {Homo
sapiens}
Length = 97
Score = 53.4 bits (129), Expect = 3e-10
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
GI + + EG AA+ ++ GD++LE+ G + H +A+ LR +
Sbjct: 35 GIFISRVSEEGPAARA-GVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQ 86
Score = 42.7 bits (101), Expect = 3e-06
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
G AA G + GD+++ V+G ++ E ++G
Sbjct: 42 SEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALRGA 81
Score = 27.2 bits (61), Expect = 1.0
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 8/42 (19%)
Query: 139 LEFVDVELTKKAGKGFGLSLVGRKQGP-------GVFISDLV 173
+E + + + ++ G G G+S+ G K G+FIS +
Sbjct: 2 MEELTLTILRQTG-GLGISIAGGKGSTPYKGDDEGIFISRVS 42
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase
binding domain, signaling protein; HET: GNP; 2.10A {Mus
musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A
2lc7_A 1rzx_A
Length = 128
Score = 54.1 bits (130), Expect = 3e-10
Identities = 10/60 (16%), Positives = 19/60 (31%)
Query: 30 RDKSQEEVATIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
GI + + P G A L D++LE+ G + + + +
Sbjct: 52 SSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMI 111
Score = 52.9 bits (127), Expect = 1e-09
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
R VPGG+A + G L D+++ V+G +V KS ++V +M
Sbjct: 71 RLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMI 111
Score = 25.2 bits (55), Expect = 8.3
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 11/42 (26%)
Query: 143 DVELTK-KAGKGFGLSLVG----------RKQGPGVFISDLV 173
V L K K G + ++ PG+FIS LV
Sbjct: 32 RVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLV 73
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3;
neuron-specific X11L2 protein, neuronal
MUNC18-1-interacting protein 3, MINT-3; NMR {Homo
sapiens}
Length = 101
Score = 53.6 bits (129), Expect = 3e-10
Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 6/67 (8%)
Query: 41 MKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK---- 96
+ ++ ++ G A + L GD++ + G + A A +R T ++
Sbjct: 35 LLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTSVTLS 94
Query: 97 --PCPTV 101
CP V
Sbjct: 95 IVHCPPV 101
Score = 52.4 bits (126), Expect = 1e-09
Identities = 9/39 (23%), Positives = 18/39 (46%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
+ GG A G L GD++ +++GT + ++
Sbjct: 45 LHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVR 83
Score = 33.6 bits (77), Expect = 0.007
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 143 DVELTKKAGKGFGLSLVGRKQG---PGVFISDLV 173
+V L K+ G+G G++LV G P I++L+
Sbjct: 12 EVHLEKRRGEGLGVALVESGWGSLLPTAVIANLL 45
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 100
Score = 53.1 bits (128), Expect = 5e-10
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
GI V + +A + L GD+I E+ G + T A+ L
Sbjct: 37 GIFVSKVEEGSSAERA-GLCVGDKITEVNGLSLESTTMGSAVKVLT 81
Score = 42.3 bits (100), Expect = 4e-06
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
+ G A G L GD+I V+G + + ++
Sbjct: 42 KVEEGSSAERAG-LCVGDKITEVNGLSLESTTMGSAVKVLTSS 83
Score = 30.0 bits (68), Expect = 0.15
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 144 VELTKKAGKGFGLSLVG-RKQGPGVFIS 170
V + K G S+ G + G G+F+S
Sbjct: 14 VRVEKSPAGRLGFSVRGGSEHGLGIFVS 41
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 114
Score = 53.2 bits (128), Expect = 5e-10
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 9/69 (13%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMA---------HLRLTPAK 94
+ I A + A+LK GD+IL + G+ N+ HA + LR+ P +
Sbjct: 44 PHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQE 103
Query: 95 AKPCPTVPS 103
P+ PS
Sbjct: 104 ELNSPSGPS 112
Score = 48.2 bits (115), Expect = 5e-08
Identities = 9/39 (23%), Positives = 21/39 (53%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
+ G A +L GD+I++V+G + + ++ ++K
Sbjct: 51 IDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIK 89
Score = 30.1 bits (68), Expect = 0.14
Identities = 8/47 (17%), Positives = 16/47 (34%), Gaps = 8/47 (17%)
Query: 135 EDDLLEFVDVELTKKAGKGFGLSLVG--------RKQGPGVFISDLV 173
L+ DV + +K +GFG ++ I ++
Sbjct: 5 SSGSLQTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRII 51
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex,
erbin., signaling protein; 1.25A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1mfl_A
Length = 95
Score = 52.8 bits (127), Expect = 6e-10
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
GI V + PEG A L+ GD+I++ G F NI H +A++ L+ +
Sbjct: 36 GIFVTRVQPEGPA--SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVE 86
Score = 40.8 bits (96), Expect = 2e-05
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
R P G A L GD+I+ +G + + +++K
Sbjct: 41 RVQPEGPA--SKLLQPGDKIIQANGYSFINIEHGQAVSLLK 79
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal
peptide complex, high affnity ligand, signaling
protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Length = 103
Score = 52.8 bits (127), Expect = 6e-10
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
GI V + PEG A L+ GD+I++ G F NI H +A++ L+ +
Sbjct: 44 GIFVTRVQPEGPA--SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVE 94
Score = 40.9 bits (96), Expect = 2e-05
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
R P G A L GD+I+ +G + + +++K
Sbjct: 49 RVQPEGPA--SKLLQPGDKIIQANGYSFINIEHGQAVSLLK 87
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1
protein, structural genomics, riken structural
genomics/proteomics initiative; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 113
Score = 53.2 bits (128), Expect = 6e-10
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
R V GG A G L +GD+++ ++G ++R K EV ++
Sbjct: 54 RIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSD 95
Score = 50.5 bits (121), Expect = 6e-09
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
+++ I GAA K L GD++LE+ G + R + L
Sbjct: 47 MDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLS 94
Score = 30.1 bits (68), Expect = 0.17
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 144 VELTKKAGKGFGLSLVGRKQGPGVFISDLV 173
V + K G ++ R + V IS +V
Sbjct: 29 VRIEKARDIPLGATV--RNEMDSVIISRIV 56
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled
coil, deafness, hearing, non-syndromic deafness,
polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A
Length = 192
Score = 54.6 bits (131), Expect = 8e-10
Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 9/71 (12%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMA------HLRLT--PAKA 95
G+ + + G A L+ GD+I+ + G + TH + + + +
Sbjct: 111 GLFISHLIKGGQADSVG-LQVGDEIVRINGYSISSCTHEEVINLIRTEKTVSIKVRHIGL 169
Query: 96 KPCPTVPSEPN 106
P + P EP
Sbjct: 170 IPVKSSPDEPL 180
Score = 44.6 bits (105), Expect = 3e-06
Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
+ GG A + G L GD+I+ ++G + + EEV +++
Sbjct: 118 IKGGQADSVG-LQVGDEIVRINGYSISSCTHEEVINLIRTE 157
Score = 34.5 bits (79), Expect = 0.008
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 140 EFVDVELTKKAGKGFGLSLVG-RKQGPGVFISDLV 173
+ +V L + +G GLS+ G + G G+FIS L+
Sbjct: 84 KLKEVRLDRLHPEGLGLSVRGGLEFGCGLFISHLI 118
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding,
nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens}
PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Length = 139
Score = 53.1 bits (127), Expect = 1e-09
Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Query: 26 GTDVRDKSQEEVATIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAM 85
G D GI V + G A L+ GD+I+++ G D +TH +A
Sbjct: 47 GIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIA-GLQIGDKIMQVNGWDMTMVTHDQAR 105
Query: 86 AHLR 89
L
Sbjct: 106 KRLT 109
Score = 40.4 bits (94), Expect = 4e-05
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
R GG A G L GD+IM V+G D+ + ++ +
Sbjct: 70 RVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLT 109
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L
homolog; PDZ domain, cellular signaling, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 122
Score = 51.4 bits (123), Expect = 3e-09
Identities = 12/55 (21%), Positives = 24/55 (43%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
L+ I + A + L+ GD+++ + G + T +A LR + +K
Sbjct: 44 SSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSK 98
Score = 46.4 bits (110), Expect = 3e-07
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
A G L GD++M+++G D + EE +++
Sbjct: 53 EADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLR 91
Score = 31.7 bits (72), Expect = 0.038
Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 5/39 (12%)
Query: 140 EFVDVELTKKAGKGFGLSLVG-----RKQGPGVFISDLV 173
E +V LT GFG+ L G IS +
Sbjct: 15 ETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIE 53
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding
site complex, protein binding; 1.43A {Homo sapiens}
PDB: 3nfl_A 2vph_A
Length = 107
Score = 49.8 bits (119), Expect = 9e-09
Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 44 GILVHDIYPEGAAAK-DARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
++V + P A RL GDQ++ + G D TH + + ++ + +
Sbjct: 44 PVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHS 97
Score = 46.0 bits (109), Expect = 3e-07
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 2 RAVPGGIAA-TDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
R PG A RL +GDQ++ ++G D+ + + ++V +K
Sbjct: 49 RVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKAS 92
Score = 30.2 bits (68), Expect = 0.15
Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 140 EFVDVELTKKAGKGFGLSLVG-RKQGPGVFISDLV 173
V + + FG ++ G Q V +S +
Sbjct: 17 NLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVA 51
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane
protein; NMR {Homo sapiens} PDB: 2ev8_A
Length = 97
Score = 49.3 bits (118), Expect = 1e-08
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
R + GG+ G L GD+I+ ++GT+V + S +++ MK
Sbjct: 42 RILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMK 82
Score = 47.4 bits (113), Expect = 7e-08
Identities = 12/48 (25%), Positives = 20/48 (41%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
K V I G + L GD+ILE+ G + N + + ++
Sbjct: 35 KQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMK 82
Score = 30.4 bits (69), Expect = 0.094
Identities = 3/31 (9%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 144 VELTKKAGKGFGLSLVGRKQGPGVFISDLVS 174
++ K + G+ L ++ ++ ++
Sbjct: 16 IQFEKVTEEPMGICLKLNEKQS-CTVARILH 45
>3gge_A PDZ domain-containing protein GIPC2; structural genomics,
structural genomics consort protein binding; 2.60A
{Homo sapiens}
Length = 95
Score = 49.0 bits (117), Expect = 2e-08
Identities = 10/51 (19%), Positives = 15/51 (29%)
Query: 43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPA 93
G + I G + GD I + GE+ H L+
Sbjct: 28 GYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKK 78
Score = 48.2 bits (115), Expect = 3e-08
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
R GG+ + + GD I S++G ++ +VA +K
Sbjct: 34 RIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKE 75
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two
alpha-helices, protein binding; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 91
Score = 48.5 bits (116), Expect = 2e-08
Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
G+ V +I P G LK D++L++ R+ + +
Sbjct: 33 GVYVKNIRPAGPGDL-GGLKPYDRLLQVNHVRTRDFDCCLVVPLIA 77
Score = 42.0 bits (99), Expect = 5e-06
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
P G G L D+++ V+ RD V ++
Sbjct: 38 NIRPAGPGDLGG-LKPYDRLLQVNHVRTRDFDCCLVVPLIAES 79
Score = 35.0 bits (81), Expect = 0.002
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 139 LEFVDVELTK-KAGKGFGLSLVGRKQGPGVFISDLV 173
+E V L K + FG S+ GV++ ++
Sbjct: 5 VELHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIR 40
>2eaq_A LIM domain only protein 7; conserved hypothetical protein,
structural genomics, NPPSFA; 1.46A {Homo sapiens}
Length = 90
Score = 48.6 bits (116), Expect = 2e-08
Identities = 8/46 (17%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
GI V + A ++L+ D+I+ + F + +
Sbjct: 29 GIFVASVEAGSPAEF-SQLQVDDEIIAINNTKFSYNDSKEWEEAMA 73
Score = 42.8 bits (101), Expect = 2e-06
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
G A +L D+I++++ T +E M
Sbjct: 36 EAGS-PAEFSQLQVDDEIIAINNTKFSYNDSKEWEEAMAKA 75
Score = 25.8 bits (57), Expect = 3.5
Identities = 6/30 (20%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 142 VDVELTKKAGKGFGLSLVGRKQGPGVFISD 171
+ + T FG ++ PG+F++
Sbjct: 7 ISINQTPGKSLDFGFTIKW--DIPGIFVAS 34
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor
clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Length = 88
Score = 48.1 bits (115), Expect = 2e-08
Identities = 11/41 (26%), Positives = 24/41 (58%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
R + GG+ G L GD+I ++G V +++ E++ +++
Sbjct: 31 RIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLR 71
Score = 47.3 bits (113), Expect = 6e-08
Identities = 13/48 (27%), Positives = 18/48 (37%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
+V I G + L GD+I E+ G N T + LR
Sbjct: 24 LNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLR 71
Score = 31.2 bits (71), Expect = 0.049
Identities = 4/30 (13%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 144 VELTKKAGKGFGLSLVGRKQGPGVFISDLV 173
V+ K + G++L + ++ ++
Sbjct: 5 VQFQKNTDEPMGITLKMNELN-HCIVARIM 33
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated
protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 96
Score = 47.7 bits (114), Expect = 4e-08
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK-----AKPC 98
+ V + G+A +L GDQIL++ E +++ +A+ LR +
Sbjct: 32 PLTVVAVTAGGSA--HGKLFPGDQILQMNNEPAEDLSWERAVDILREAEDSLSITVVRCT 89
Query: 99 PTVPS 103
+ PS
Sbjct: 90 SSGPS 94
Score = 45.0 bits (107), Expect = 4e-07
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
GG A G+L GDQI+ ++ D S E I++
Sbjct: 39 TAGGSA--HGKLFPGDQILQMNNEPAEDLSWERAVDILREA 77
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain,
ptpase, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 119
Score = 48.3 bits (115), Expect = 4e-08
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 44 GILVHDIYPEGAAAK-DARLKFGDQILELTGEDFRNITHAKAMAHLR 89
++V + P A RL GDQ++ + G D TH + + ++
Sbjct: 42 PVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIK 88
Score = 46.0 bits (109), Expect = 3e-07
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 2 RAVPGGIAA-TDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
R PG A RL +GDQ++ ++G D+ + + ++V +K
Sbjct: 47 RVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKAS 90
Score = 29.8 bits (67), Expect = 0.17
Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 140 EFVDVELTKKAGKGFGLSLVG-RKQGPGVFISDLV 173
V + + FG ++ G Q V +S +
Sbjct: 15 NLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVA 49
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics
consortium, SGC, protein BIN; 1.30A {Homo sapiens}
Length = 93
Score = 47.7 bits (114), Expect = 4e-08
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
R + GG A G + GD++ V+G V DK EE+ I+
Sbjct: 34 RIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILA 74
Score = 46.6 bits (111), Expect = 9e-08
Identities = 12/48 (25%), Positives = 21/48 (43%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
G I+V I GAA + + GD++ E+ G + + + L
Sbjct: 27 TGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILA 74
Score = 28.1 bits (63), Expect = 0.59
Identities = 4/30 (13%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 144 VELTKKAGKGFGLSLVGRKQGPGVFISDLV 173
+ L K + G ++ +Q + ++ ++
Sbjct: 8 IRL-VKNREPLGATIKKDEQTGAIIVARIM 36
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere,
structural protein; NMR {Homo sapiens} SCOP: b.36.1.1
PDB: 1wjl_A
Length = 85
Score = 46.9 bits (112), Expect = 8e-08
Identities = 11/46 (23%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
+ + I P AA+ ++L GD ++ + G + +TH +A ++
Sbjct: 26 PLTISRITPGSKAAQ-SQLSQGDLVVAIDGVNTDTMTHLEAQNKIK 70
Score = 38.8 bits (91), Expect = 6e-05
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
R PG AA +L +GD ++++DG + + E +K
Sbjct: 31 RITPGSKAA-QSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSA 72
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma
homolog, phosphorylation, signaling PR LIM domain, PDZ
domain; 1.5A {Homo sapiens}
Length = 88
Score = 46.9 bits (112), Expect = 9e-08
Identities = 11/46 (23%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
+ + + G AA+ A ++ GD +L + G + + +TH +A ++
Sbjct: 28 PLTISSLKDGGKAAQ-ANVRIGDVVLSIDGINAQGMTHLEAQNKIK 72
Score = 40.7 bits (96), Expect = 2e-05
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
GG AA + GD ++S+DG + + + E +KG
Sbjct: 33 SLKDGGKAA-QANVRIGDVVLSIDGINAQGMTHLEAQNKIKGC 74
Score = 26.9 bits (60), Expect = 1.5
Identities = 5/29 (17%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 143 DVELTKKAGKGFGLSLV-GRKQGPGVFIS 170
+ ++ +G L G+ + IS
Sbjct: 4 NYSVSLVGPAPWGFRLQGGKDFNMPLTIS 32
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics,
structural genomics consort metal binding protein;
1.70A {Homo sapiens} PDB: 3pdv_A
Length = 87
Score = 46.1 bits (110), Expect = 2e-07
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
I+V + G A A L+ GD I+ + GE + HA+A + +R
Sbjct: 27 PIMVTKVAERGKAKD-ADLRPGDIIVAINGESAEGMLHAEAQSKIR 71
Score = 39.2 bits (92), Expect = 5e-05
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
+ G A D L GD I++++G E + ++
Sbjct: 32 KVAERGKAK-DADLRPGDIIVAINGESAEGMLHAEAQSKIRQS 73
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 48.7 bits (115), Expect = 2e-07
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 38 ATIMKG---GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK 94
+ G GI V + + AAK+ L+ GDQIL + DF NI +A+ L P
Sbjct: 23 LRLAGGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKG 81
Query: 95 AKPCPTVPSEPN 106
+ + +
Sbjct: 82 EEVTILAQKKKD 93
Score = 44.0 bits (103), Expect = 7e-06
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
+ AA +G L +GDQI+ V+ D + +EE +
Sbjct: 37 GVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLL 76
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 45.8 bits (109), Expect = 2e-07
Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 11/74 (14%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMA-------HLRLT---PA 93
+ + + G A++ A ++ GD +L + G + +TH +A L +T +
Sbjct: 30 PLTISSLKDGGKASQ-AHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRAS 88
Query: 94 KAKPCPTVPSEPNA 107
A V S P++
Sbjct: 89 AAAKSEPVSSGPSS 102
Score = 39.7 bits (93), Expect = 5e-05
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
GG A+ + GD ++S+DG + + E +K
Sbjct: 35 SLKDGGKAS-QAHVRIGDVVLSIDGISAQGMTHLEAQNKIKAC 76
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural
genomics consortium, SGC; 1.11A {Homo sapiens}
Length = 89
Score = 45.4 bits (108), Expect = 3e-07
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
+ + + P G AA+ A + GD +L + GE+ ++TH +A +R
Sbjct: 28 PLSISRLTPGGKAAQ-AGVAVGDWVLSIDGENAGSLTHIEAQNKIR 72
Score = 39.2 bits (92), Expect = 5e-05
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
R PGG AA G + GD ++S+DG + + E ++
Sbjct: 33 RLTPGGKAAQAG-VAVGDWVLSIDGENAGSLTHIEAQNKIRAC 74
Score = 25.0 bits (55), Expect = 6.0
Identities = 5/28 (17%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 144 VELTKKAGKGFGLSLVG-RKQGPGVFIS 170
++ + +G L G + + IS
Sbjct: 5 FKVVLEGPAPWGFRLQGGKDFNVPLSIS 32
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium
channel 3 chimera; PDZ domain, PDZ binding, GIRK3
regulation, early endosomes; 1.68A {Rattus norvegicus}
PDB: 3qdo_A 3qgl_A
Length = 107
Score = 45.8 bits (109), Expect = 3e-07
Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 24 VDGTDVRDKSQEEVATIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAK 83
+ + + V + P GAA + A ++ GD+ILE+ G + TH +
Sbjct: 24 RGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADR-AGVRKGDRILEVNGVNVEGATHKQ 82
Query: 84 AMAHLR 89
+ +R
Sbjct: 83 VVDLIR 88
Score = 43.1 bits (102), Expect = 3e-06
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
+PGG A G + KGD+I+ V+G +V + ++V +++ G
Sbjct: 51 LPGGAADRAG-VRKGDRILEVNGVNVEGATHKQVVDLIRAG 90
>2edp_A Fragment, shroom family member 4; APX/shroom family member,
KIAA1202 protein, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 100
Score = 45.4 bits (108), Expect = 3e-07
Identities = 9/46 (19%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
+ V I G AA +++ GD+++ + G + +A+ ++
Sbjct: 36 PLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYG-SRQEALILIK 80
Score = 41.9 bits (99), Expect = 6e-06
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
+ GG AA ++ GD++++++GT + QE + I
Sbjct: 41 KIEDGGKAALSQKMRTGDELVNINGTPLYGSRQEALILIKGSF 83
Score = 25.8 bits (57), Expect = 4.4
Identities = 6/28 (21%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 144 VELTKKAGKGFGLSLVG-RKQGPGVFIS 170
V + + G +G +L G + + +S
Sbjct: 13 VPVQLQGGAPWGFTLKGGLEHCEPLTVS 40
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain,
intracellular signaling cascade, signal transduction;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 111
Score = 45.9 bits (109), Expect = 3e-07
Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 7/76 (9%)
Query: 43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKA------K 96
+ VH + P +A+ A K GD I+ + G D + +T ++ M L+ +
Sbjct: 36 TPVQVHFLDPHCSASL-AGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVS 94
Query: 97 PCPTVPSEPNANATTG 112
+ S N + +
Sbjct: 95 LLDSTSSMHNKSGPSS 110
Score = 43.6 bits (103), Expect = 2e-06
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
P A+ G +GD I+S+ G D + + EV ++K
Sbjct: 44 DPHCSASLAG-AKEGDYIVSIQGVDCKWLTVSEVMKLLKS 82
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation,
cell projection, disease mutation, membrane,
phosphoprotein, polymorphism; NMR {Homo sapiens}
Length = 216
Score = 47.5 bits (112), Expect = 4e-07
Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
K G + + P+ A + L+ D+I+E+ G H ++ +R
Sbjct: 32 KPGQFIRSVDPDSPAEA-SGLRAQDRIVEVNGVCMEGKQHGDVVSAIR 78
Score = 40.5 bits (94), Expect = 8e-05
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 5 PGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
P A G L D+I+ V+G + K +V + ++ G
Sbjct: 42 PDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAG 80
Score = 31.3 bits (70), Expect = 0.11
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 144 VELTKKAGKGFGLSLVGRKQGPGVFISDL 172
+ KK G+G +L K PG FI +
Sbjct: 13 CTM-KKGPSGYGFNLHSDKSKPGQFIRSV 40
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ
domain, cytoskeleton, actin binding, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 45.0 bits (107), Expect = 6e-07
Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 11/74 (14%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMA-------HLRLT---PA 93
+++ I P AA A L GD IL + G ++THA A L L
Sbjct: 30 PLVITRITPGSKAAA-ANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAE 88
Query: 94 KAKPCPTVPSEPNA 107
P V S P++
Sbjct: 89 TRLWSPQVSSGPSS 102
Score = 40.0 bits (94), Expect = 4e-05
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
R PG AA L GD I+++DG + + +K
Sbjct: 35 RITPGSKAA-AANLCPGDVILAIDGFGTESMTHADAQDRIKAA 76
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 44.6 bits (106), Expect = 6e-07
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
+ + ++ AA A L GD I + GE +TH +A ++
Sbjct: 33 PLTISRVHAGSKAAL-AALCPGDLIQAINGESTELMTHLEAQNRIK 77
Score = 40.7 bits (96), Expect = 2e-05
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
R G AA L GD I +++G + E +KG
Sbjct: 38 RVHAGSKAALAA-LCPGDLIQAINGESTELMTHLEAQNRIKGC 79
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ
domain, protein, acetylation, cell projection, disease
mutation, membrane; NMR {Homo sapiens}
Length = 128
Score = 45.2 bits (107), Expect = 6e-07
Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
K G + + P+ A + L+ D+I+E+ G H ++ +R
Sbjct: 32 KPGQFIRSVDPDSPAEA-SGLRAQDRIVEVNGVCMEGKQHGDVVSAIR 78
Score = 40.2 bits (94), Expect = 5e-05
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 5 PGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
P A G L D+I+ V+G + K +V + ++ G
Sbjct: 42 PDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAG 80
Score = 30.6 bits (69), Expect = 0.12
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 144 VELTKKAGKGFGLSLVGRKQGPGVFISDL 172
+ KK G+G +L K PG FI +
Sbjct: 13 CTM-KKGPSGYGFNLHSDKSKPGQFIRSV 40
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding,
protein-binding, RHOB, nitration, cytoplasm, PDZ
domain, CAsp8; 1.82A {Homo sapiens}
Length = 109
Score = 44.8 bits (106), Expect = 6e-07
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
+ VH + P +A+ A + GD I+ + D + +T ++ M L+
Sbjct: 45 PVQVHFLDPYCSASV-AGAREGDYIVSIQLVDCKWLTLSEVMKLLK 89
Score = 44.8 bits (106), Expect = 7e-07
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
P A+ G +GD I+S+ D + + EV ++K
Sbjct: 52 DPYCSASVAG-AREGDYIVSIQLVDCKWLTLSEVMKLLK 89
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ
domain, PDZ2, acetylation, cell projection, membrane,
polymorphism; NMR {Homo sapiens}
Length = 98
Score = 44.3 bits (105), Expect = 1e-06
Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
K G + + P+ A + L+ D+I+E+ G H ++ +R
Sbjct: 32 KPGQFIRSVDPDSPAEA-SGLRAQDRIVEVNGVCMEGKQHGDVVSAIR 78
Score = 38.9 bits (91), Expect = 8e-05
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 5 PGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
P A G L D+I+ V+G + K +V + ++ G
Sbjct: 42 PDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAG 80
Score = 30.0 bits (68), Expect = 0.13
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 144 VELTKKAGKGFGLSLVGRKQGPGVFISDL 172
+ KK G+G +L K PG FI +
Sbjct: 13 CTM-KKGPSGYGFNLHSDKSKPGQFIRSV 40
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 1; structural genomi consortium, SGC,
ATP-binding, cell junction; 1.60A {Homo sapiens}
Length = 88
Score = 43.8 bits (104), Expect = 1e-06
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPA 93
GG V I + + LK GD I+E+ ++ + +TH + + L +P
Sbjct: 26 GGGQRVKQIVD---SPRSRGLKEGDLIVEVNKKNVQALTHNQVVDMLVESPK 74
Score = 42.7 bits (101), Expect = 3e-06
Identities = 7/36 (19%), Positives = 17/36 (47%)
Query: 9 AATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
+ L +GD I+ V+ +V+ + +V ++
Sbjct: 37 SPRSRGLKEGDLIVEVNKKNVQALTHNQVVDMLVES 72
Score = 32.6 bits (75), Expect = 0.014
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 139 LEFVDVELTKKAGKGFGLSLVGRKQGPGVFISDLVS 174
+E + V + K GFG ++ G G + +V
Sbjct: 2 MELITVHIVKGP-MGFGFTIADSPGGGGQRVKQIVD 36
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics,
structural genomics consort unknown function; HET: PG4;
1.50A {Homo sapiens} PDB: 2v1w_A*
Length = 91
Score = 43.5 bits (103), Expect = 1e-06
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
+ + + P AA A L GD I + GE+ N+TH +A ++
Sbjct: 28 PLAISRVTPGSKAAL-ANLCIGDVITAIDGENTSNMTHLEAQNRIK 72
Score = 38.9 bits (91), Expect = 7e-05
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
R PG AA L GD I ++DG + + + E +KG
Sbjct: 33 RVTPGSKAAL-ANLCIGDVITAIDGENTSNMTHLEAQNRIKGC 74
Score = 25.0 bits (55), Expect = 7.4
Identities = 6/28 (21%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 144 VELTKKAGKGFGLSLVG-RKQGPGVFIS 170
++ + +G LVG + + IS
Sbjct: 5 QQIDLQGPGPWGFRLVGGKDFEQPLAIS 32
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 94
Score = 43.4 bits (103), Expect = 1e-06
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
I+V + G A A L+ GD I+ + G+ N+ HA+A + +R
Sbjct: 31 PIIVTKVTERGKAEA-ADLRPGDIIVAINGQSAENMLHAEAQSKIR 75
Score = 39.6 bits (93), Expect = 5e-05
Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
+ G A L GD I++++G + E + ++
Sbjct: 36 KVTERGKAEAAD-LRPGDIIVAINGQSAENMLHAEAQSKIRQS 77
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 46.1 bits (108), Expect = 2e-06
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 38 ATIMKG---GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK 94
+ G GI V + + AAK+ L+ GDQIL + DF NI +A+ L P
Sbjct: 15 LRLAGGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKG 73
Query: 95 AKPCPTVPSEPN 106
+ + +
Sbjct: 74 EEVTILAQKKKD 85
Score = 43.8 bits (102), Expect = 1e-05
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
+ AA +G L +GDQI+ V+ D + +EE +
Sbjct: 29 GVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLL 68
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 106
Score = 43.5 bits (103), Expect = 2e-06
Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
K G+ + DI P+G A + A + D ++E+ GE+ + +H + + ++
Sbjct: 31 KKGVYMTDITPQGVAMR-AGVLADDHLIEVNGENVEDASHEEVVEKVK 77
Score = 42.4 bits (100), Expect = 5e-06
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
P G+A G +L D ++ V+G +V D S EEV +K
Sbjct: 40 TPQGVAMRAG-VLADDHLIEVNGENVEDASHEEVVEKVKKS 79
Score = 29.3 bits (66), Expect = 0.23
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 144 VELTKKAGKGFGLSLVGRKQGPGVFISDLV 173
L K G +G SL + GV+++D+
Sbjct: 12 CYL-VKEGGSYGFSLKTVQGKKGVYMTDIT 40
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo
sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A
2ocs_A
Length = 91
Score = 43.0 bits (102), Expect = 2e-06
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
K G + + P A K A L GD+++E+ GE+ TH + ++ +R
Sbjct: 26 KLGQYIRLVEPGSPAEK-AGLLAGDRLVEVNGENVEKETHQQVVSRIR 72
Score = 41.5 bits (98), Expect = 7e-06
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
PG A G LL GD+++ V+G +V ++ ++V + ++
Sbjct: 33 LVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQVVSRIRAA 74
Score = 29.6 bits (67), Expect = 0.17
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 144 VELTKKAGKGFGLSLVGRKQGPGVFISDL 172
L +K G+G L G K G +I +
Sbjct: 7 CCL-EKGPNGYGFHLHGEKGKLGQYIRLV 34
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs
large homolog 2, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 91
Score = 42.8 bits (101), Expect = 2e-06
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
G +++ I G A+ L GD I E+ G+ + LR
Sbjct: 28 GGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPVGS-DPRALQELLR 74
Score = 40.5 bits (95), Expect = 2e-05
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
R + GG+ A G L GD I V+G V + +++
Sbjct: 35 RILHGGMVAQQGLLHVGDIIKEVNGQPVG-SDPRALQELLRN 75
Score = 30.9 bits (70), Expect = 0.063
Identities = 8/30 (26%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 144 VELTKKAGKGFGLSLVGRKQGPGVFISDLV 173
V + K AG+ G++ R +G + I+ ++
Sbjct: 10 VGIRKTAGEHLGVTF--RVEGGELVIARIL 37
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation,
structural genomics, structural genomics consortium,
SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Length = 90
Score = 42.7 bits (101), Expect = 3e-06
Identities = 11/48 (22%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
+ G + + P AA+ + L+ D+++E+ G++ + HA+ +A ++
Sbjct: 27 RPGQYIRSVDPGSPAAR-SGLRAQDRLIEVNGQNVEGLRHAEVVASIK 73
Score = 40.3 bits (95), Expect = 2e-05
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
PG AA G L D+++ V+G +V EV +K
Sbjct: 36 DPGSPAARSG-LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 75
Score = 30.3 bits (69), Expect = 0.076
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 144 VELTKKAGKGFGLSLVGRKQGPGVFISDLV 173
L +K +G+G +L K PG +I +
Sbjct: 8 CHL-RKGPQGYGFNLHSDKSRPGQYIRSVD 36
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3,
human, structural genomics, structural GE consortium,
SGC, signaling protein; 2.39A {Homo sapiens} SCOP:
b.36.1.1
Length = 91
Score = 42.0 bits (99), Expect = 5e-06
Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 6/68 (8%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK-----PC 98
+ V + G A + A L+ D +L+L + + +R P++
Sbjct: 25 PVRVQAVDSGGPAER-AGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRMV 83
Query: 99 PTVPSEPN 106
P V P+
Sbjct: 84 PQVKPGPD 91
Score = 41.6 bits (98), Expect = 7e-06
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
GG A G L + D ++ ++ V E+A ++
Sbjct: 32 DSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSC 71
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function;
1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 43.8 bits (102), Expect = 5e-06
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVPS 103
GI V + PEG A L+ GD+I++ G F NI H +A++ L+ +
Sbjct: 25 GIFVTRVQPEGPA--SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV 82
Query: 104 EPNANATTGEKTT 116
A +
Sbjct: 83 GNGAKQEIRVRVE 95
Score = 34.1 bits (77), Expect = 0.011
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
P G A L GD+I+ +G + + +++K
Sbjct: 32 QPEGPA--SKLLQPGDKIIQANGYSFINIEHGQAVSLLKT 69
Score = 29.9 bits (66), Expect = 0.31
Identities = 9/42 (21%), Positives = 12/42 (28%), Gaps = 2/42 (4%)
Query: 4 VPG-GIAATDGRLLKG-DQIMSVDGTDVRDKSQEEVATIMKG 43
VP AT L G D ++V S +
Sbjct: 152 VPYSSSTATISGLKPGVDYTITVYAYSDYYGSHHYSPISINY 193
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling
protein; NMR {Homo sapiens}
Length = 83
Score = 41.8 bits (99), Expect = 5e-06
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
+ G A G L GDQI++V+ +V+ S E+V ++
Sbjct: 31 MRGSPADFVG-LRAGDQILAVNEINVKKASHEDVVKLIGKC 70
Score = 40.7 bits (96), Expect = 1e-05
Identities = 8/46 (17%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
++ + A L+ GDQIL + + + +H + +
Sbjct: 24 PCVLSCVMRGSPADF-VGLRAGDQILAVNEINVKKASHEDVVKLIG 68
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ
domain, arhgef11, KIAA0380, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Length = 93
Score = 41.5 bits (98), Expect = 7e-06
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 5 PGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
PGG A G + +GD+I+ V+GT V + S EV ++K G
Sbjct: 38 PGGAAMKAG-VKEGDRIIKVNGTMVTNSSHLEVVKLIKSG 76
Score = 41.5 bits (98), Expect = 8e-06
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHA------KAMAHLRLTPAKAKP 97
+LV + P GAA K A +K GD+I+++ G N +H K+ A++ LT +
Sbjct: 30 IVLVQSVRPGGAAMK-AGVKEGDRIIKVNGTMVTNSSHLEVVKLIKSGAYVALTLLGSSS 88
Query: 98 CPT 100
P+
Sbjct: 89 GPS 91
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, signaling protein; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 100
Score = 41.3 bits (97), Expect = 1e-05
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 5 PGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
GG A G L + D ++ ++ V E+A ++
Sbjct: 45 SGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSC 83
Score = 40.5 bits (95), Expect = 2e-05
Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
+ V + G A + A L+ D +L+L + + +R P++
Sbjct: 37 PVRVQAVDSGGPAER-AGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEII 88
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 102
Score = 41.6 bits (98), Expect = 1e-05
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
+ G ++ DI P A A LK D ++ + G+ + H + +R
Sbjct: 29 QKGQIIKDIEPGSPAEA-AGLKNNDLVVAVNGKSVEALDHDGVVEMIR 75
Score = 38.5 bits (90), Expect = 1e-04
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 5 PGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
PG A G L D +++V+G V + V +++ G
Sbjct: 39 PGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEMIRKG 77
Score = 28.9 bits (65), Expect = 0.35
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 148 KKAGKGFGLSLVGRKQGPGVFISD 171
KK G+G L + G I D
Sbjct: 13 KKGSNGYGFYLRAGPEQKGQIIKD 36
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain,
structural genomics, KIAA0705 protein; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 96
Score = 40.8 bits (96), Expect = 1e-05
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPA 93
G V I L GD I+E+ ++ +N++H + + L+ P
Sbjct: 31 PTGQRVKQILDIQGCP---GLCEGDLIVEINQQNVQNLSHTEVVDILKDCPI 79
Score = 38.1 bits (89), Expect = 1e-04
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 12 DGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
L +GD I+ ++ +V++ S EV I+K
Sbjct: 45 CPGLCEGDLIVEINQQNVQNLSHTEVVDILKDC 77
Score = 26.2 bits (58), Expect = 2.8
Identities = 7/28 (25%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 140 EFVDVELTKKAGKGFGLSLVGRKQGPGV 167
E + + + K +GFG ++ G V
Sbjct: 10 ELMTLTI-VKGAQGFGFTIADSPTGQRV 36
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Length = 82
Score = 40.4 bits (95), Expect = 2e-05
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
V AA +G LL I ++G +V ++A I+
Sbjct: 31 VKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILSTS 70
Score = 33.4 bits (77), Expect = 0.005
Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 41 MKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
K G + I + +AA+ L I E+ G++ + ++ L
Sbjct: 22 FKNGK-ITSIVKDSSAAR-NGLLTEHNICEINGQNVIGLKDSQIADILS 68
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm,
phosphoprotein, transport protein, CAsp; 2.60A {Homo
sapiens} PDB: 2eej_A
Length = 91
Score = 40.3 bits (95), Expect = 2e-05
Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
G + ++ G A A L+ D I+E+ G + + + K + ++
Sbjct: 26 LPGSFIKEVQKGGPADL-AGLEDEDVIIEVNGVNVLDEPYEKVVDRIQ 72
Score = 39.6 bits (93), Expect = 4e-05
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
GG A G L D I+ V+G +V D+ E+V ++
Sbjct: 35 QKGGPADLAG-LEDEDVIIEVNGVNVLDEPYEKVVDRIQSS 74
Score = 28.8 bits (65), Expect = 0.36
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 144 VELTKKAGKGFGLSLVGRKQGPGVFISDLV 173
L K G+G L + PG FI ++
Sbjct: 7 CRL-AKGENGYGFHLNAIRGLPGSFIKEVQ 35
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A
{Homo sapiens}
Length = 96
Score = 40.4 bits (95), Expect = 3e-05
Identities = 12/56 (21%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 34 QEEVATIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
+EE + G + ++ P A K A ++ GD+++ + GE + H + ++ ++
Sbjct: 21 REEKGLDGRPGQFLWEVDPGLPAKK-AGMQAGDRLVAVAGESVEGLGHEETVSRIQ 75
Score = 39.6 bits (93), Expect = 4e-05
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 5 PGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
PG A G + GD++++V G V EE + ++G
Sbjct: 39 PGLPAKKAG-MQAGDRLVAVAGESVEGLGHEETVSRIQGQ 77
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3,
microtubule associated serine/threonine kinase 3, PDZ
domain, structural genomics; 1.20A {Homo sapiens} PDB:
2w7r_A 2kqf_A 2kyl_A 3ps4_A
Length = 99
Score = 40.5 bits (95), Expect = 3e-05
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 53 EGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
+G+ A++A L+ GD I + GE + H + L
Sbjct: 43 DGSPAQEAGLRAGDLITHINGESVLGLVHMDVVELLL 79
Score = 38.5 bits (90), Expect = 1e-04
Identities = 10/43 (23%), Positives = 17/43 (39%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
+V G A + L GD I ++G V +V ++
Sbjct: 39 WSVEDGSPAQEAGLRAGDLITHINGESVLGLVHMDVVELLLKS 81
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain,
adaptor protein, SR-BI, signaling protein; 1.30A {Mus
musculus} PDB: 3r69_A*
Length = 95
Score = 40.3 bits (95), Expect = 3e-05
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
+ G ++ DI P A A LK D ++ + G+ + H + +R
Sbjct: 28 QKGQIIKDIEPGSPAEA-AGLKNNDLVVAVNGKSVEALDHDGVVEMIR 74
Score = 38.4 bits (90), Expect = 1e-04
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
PG A G L D +++V+G V + V +++ G
Sbjct: 37 EPGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEMIRKG 76
Score = 28.4 bits (64), Expect = 0.52
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 148 KKAGKGFGLSLVGRKQGPGVFISD 171
KK G+G L + G I D
Sbjct: 12 KKGSNGYGFYLRAGPEQKGQIIKD 35
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 3; structural genomics consortium, SGC, PDZ
domain, signaling P; 1.60A {Homo sapiens}
Length = 113
Score = 39.8 bits (93), Expect = 5e-05
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 9 AATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
+ L KGD I + +V++ + +V ++K
Sbjct: 44 SQWCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQ 78
Score = 38.7 bits (90), Expect = 2e-04
Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 4/74 (5%)
Query: 43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTV- 101
+ + L+ GD I E+ ++ +N+TH + + L+ P A +
Sbjct: 31 DSPTGQKVKMILDSQWCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLIL 90
Query: 102 ---PSEPNANATTG 112
P P A G
Sbjct: 91 RGGPPSPTKTAKMG 104
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 126
Score = 39.9 bits (93), Expect = 7e-05
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 5 PGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
GG A G L GD+I+ V+G V K+ +V +++
Sbjct: 70 EGGPAFEAG-LCTGDRIIKVNGESVIGKTYSQVIALIQNS 108
Score = 39.1 bits (91), Expect = 1e-04
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
I V + G A + A L GD+I+++ GE T+++ +A ++
Sbjct: 60 MDTIFVKQVKEGGPAFE-AGLCTGDRIIKVNGESVIGKTYSQVIALIQ 106
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI,
signaling protein; 1.80A {Mus musculus}
Length = 106
Score = 39.0 bits (91), Expect = 9e-05
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
G L+ I A K A L GD++L + G HA+ + +R
Sbjct: 25 TDGHLIRVIEEGSPAEK-AGLLDGDRVLRINGVFVDKEEHAQVVELVR 71
Score = 36.6 bits (85), Expect = 7e-04
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
G A G LL GD+++ ++G V + +V +++
Sbjct: 32 VIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVELVRKS 73
Score = 30.9 bits (70), Expect = 0.066
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 143 DVELTKKAGKGFGLSLVGRKQGPGVFIS 170
+ +L+K+ G+ +G L K G I
Sbjct: 4 ESKLSKQEGQNYGFFLRIEKDTDGHLIR 31
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 39.2 bits (91), Expect = 1e-04
Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 10/70 (14%)
Query: 43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMA---------HLRLTPA 93
+ V+ + G A+K LK GD+ILE+ + + +R P
Sbjct: 44 RRLYVNSVKETGLASK-KGLKAGDEILEINNRAADALNSSMLKDFLSQPSLGLLVRTYPE 102
Query: 94 KAKPCPTVPS 103
+ + PS
Sbjct: 103 LEEGVESGPS 112
Score = 36.9 bits (85), Expect = 6e-04
Identities = 7/39 (17%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
G+A+ G L GD+I+ ++ + + +
Sbjct: 52 KETGLASKKG-LKAGDEILEINNRAADALNSSMLKDFLS 89
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70
kDa, Na/PI cotransporter C- terminal-associated
protein, NAPI-CAP1; NMR {Mus musculus}
Length = 114
Score = 39.0 bits (91), Expect = 1e-04
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
G L+ I A K A L GD++L + G HA+ + +R
Sbjct: 37 TDGHLIRVIEEGSPAEK-AGLLDGDRVLRINGVFVDKEEHAQVVELVR 83
Score = 37.4 bits (87), Expect = 4e-04
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
G A G LL GD+++ ++G V + +V +++
Sbjct: 44 VIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVELVRKS 85
Score = 31.7 bits (72), Expect = 0.044
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 143 DVELTKKAGKGFGLSLVGRKQGPGVFIS 170
+ +L+K+ G+ +G L K G I
Sbjct: 16 ECKLSKQEGQNYGFFLRIEKDTDGHLIR 43
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1;
copper chaperone for superoxide dismutase, neuronal
adaptor, protein transport; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 90
Score = 38.2 bits (89), Expect = 1e-04
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
+ GGIA G + G +I+ ++G V E++ I+
Sbjct: 37 SLMRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVHILSNA 78
Score = 35.5 bits (82), Expect = 0.001
Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 30 RDKSQEEVATIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
R + ++ ++ GI + + G A + ++ G +I+E+ G+ H K + L
Sbjct: 19 RPDLRYQLGFSVQNGI-ICSLMRGGIAER-GGVRVGHRIIEINGQSVVATPHEKIVHILS 76
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ,
cell junction, cell adhesion, signaling protein,
nucleotide exchange factor; 1.30A {Homo sapiens} PDB:
3kze_A
Length = 94
Score = 38.4 bits (89), Expect = 1e-04
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 5/65 (7%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTV 101
+ V+ + G A+K LK GD+ILE+ + + L + V
Sbjct: 34 IRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDFLS----QPSLGLLV 88
Query: 102 PSEPN 106
+ P
Sbjct: 89 RTYPE 93
Score = 35.7 bits (82), Expect = 0.001
Identities = 7/40 (17%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
G+A+ G L GD+I+ ++ + + +
Sbjct: 43 KETGLASKKG-LKAGDEILEINNRAADALNSSMLKDFLSQ 81
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding
protein; PDZ domain, cytoplasm, membrane, polymorphism,
protein binding; 2.70A {Homo sapiens}
Length = 104
Score = 37.8 bits (88), Expect = 2e-04
Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
L+ I + A A L+ GD + + G T+ + + +R
Sbjct: 49 FTLICKIQEDSPAHC-AGLQAGDVLANINGVSTEGFTYKQVVDLIR 93
Score = 35.9 bits (83), Expect = 0.001
Identities = 7/40 (17%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 5 PGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
A G L GD + +++G + ++V +++
Sbjct: 57 EDSPAHCAG-LQAGDVLANINGVSTEGFTYKQVVDLIRSS 95
Score = 26.7 bits (59), Expect = 2.4
Identities = 4/24 (16%), Positives = 9/24 (37%)
Query: 143 DVELTKKAGKGFGLSLVGRKQGPG 166
V + K+ + FG + +
Sbjct: 18 LVTVEKQDNETFGFEIQSYRPQNQ 41
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus
norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A
3o5n_A*
Length = 109
Score = 37.9 bits (88), Expect = 2e-04
Identities = 10/46 (21%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
+ + G A + A L+ GD ++E+ G++ + H + + +R
Sbjct: 46 LQYLESVDEGGVAWR-AGLRMGDFLIEVNGQNVVKVGHRQVVNMIR 90
Score = 36.0 bits (83), Expect = 0.001
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 5 PGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
GG+A G L GD ++ V+G +V +V +++ G
Sbjct: 54 EGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVNMIRQG 92
>2ego_A General receptor for phosphoinositides 1- associated scaffold
protein; PDZ domain, ligand-free, protein binding;
1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Length = 96
Score = 37.7 bits (88), Expect = 2e-04
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
V ++ A A L GD I + G + I H + + ++
Sbjct: 38 VTFVARVHESSPAQL-AGLTPGDTIASVNGLNVEGIRHREIVDIIK 82
Score = 36.6 bits (85), Expect = 6e-04
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 5 PGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
A G L GD I SV+G +V E+ I+K
Sbjct: 46 ESSPAQLAG-LTPGDTIASVNGLNVEGIRHREIVDIIKAS 84
Score = 25.0 bits (55), Expect = 8.1
Identities = 4/23 (17%), Positives = 7/23 (30%)
Query: 144 VELTKKAGKGFGLSLVGRKQGPG 166
+ L K + FG +
Sbjct: 8 LTLEKGDNQTFGFEIQTYGLHHR 30
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil,
PDZ, guanine-nucleotide releasing factor,
phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Length = 132
Score = 38.4 bits (89), Expect = 3e-04
Identities = 10/46 (21%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
+ + G A + A L+ GD ++E+ G++ + H + + +R
Sbjct: 66 LQYLESVDEGGVAWR-AGLRMGDFLIEVNGQNVVKVGHRQVVNMIR 110
Score = 35.7 bits (82), Expect = 0.002
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 5 PGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
GG+A G L GD ++ V+G +V +V +++ G
Sbjct: 74 EGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVNMIRQG 112
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease,
serine protease, serine- lysine catalytic DYAD, PDZ
domain, photosynthesis; 1.80A {Scenedesmus obliquus}
SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Length = 388
Score = 35.3 bits (82), Expect = 0.005
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 15 LLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
GD I++VDGT V+ S +V+ +++G
Sbjct: 117 ARAGDVIVTVDGTAVKGMSLYDVSDLLQG 145
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta
protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4
b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A*
1sot_A 1soz_A 1vcw_A 2r3y_A
Length = 318
Score = 33.7 bits (78), Expect = 0.019
Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVP 102
GI+V+++ P+G AA A ++ D I+ + + + A+ +P +P
Sbjct: 245 GIVVNEVSPDGPAAN-AGIQVNDLIISVDNKPAIS------ALETMDQVAEIRPGSVIP 296
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR
{Streptococcus pneumoniae}
Length = 134
Score = 32.6 bits (75), Expect = 0.023
Identities = 15/131 (11%), Positives = 41/131 (31%), Gaps = 36/131 (27%)
Query: 18 GDQIMSVDGTDVRDKSQEEVATIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFR 77
G Q++++ D + + + + G++V + A + L+ D I ++ ++
Sbjct: 32 GIQMVNLSNVSTSDIRRLNIPSNVTSGVIVRSVQSNMPA--NGHLEKYDVITKVDDKEIA 89
Query: 78 NITHAKAMAHLRLTPAKAKPCPTVPSEPNANATTGEKTTFYFHFQVKLVVLRDTVTKEDD 137
+ L+ G+ +K+ R+ +
Sbjct: 90 S------STDLQSALYNHSI--------------GDT--------IKITYYRNGKEET-- 119
Query: 138 LLEFVDVELTK 148
++L K
Sbjct: 120 ----TSIKLNK 126
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane,
cell membrane, membrane, metal-binding,
metalloprotease, transmembrane; 1.67A {Escherichia coli
k-12} PDB: 2zpl_A
Length = 95
Score = 31.9 bits (72), Expect = 0.030
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
IAA + G ++ +VDG + D + + K G
Sbjct: 10 AANSIAAEAQ-IAPGTELKAVDGIETPDWDAVRLQLVDKIG 49
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase;
2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Length = 451
Score = 33.1 bits (76), Expect = 0.037
Identities = 11/71 (15%), Positives = 20/71 (28%), Gaps = 1/71 (1%)
Query: 9 AATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGGILVHDIYPEGAAAKDARLKFGDQI 68
+ G +R QE G+ V A A ++ GD I
Sbjct: 352 DIKSHEQKLQSNNPFLYGLALRAFEQESPPHGNVIGVQVVGASENSAGW-RAGIRPGDII 410
Query: 69 LELTGEDFRNI 79
+ + ++
Sbjct: 411 ISANKKPVTDV 421
Score = 31.5 bits (72), Expect = 0.11
Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 7/59 (11%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVP 102
G LV + P A A LK GD I ++ ++ T + + TV
Sbjct: 283 GALVSQVNPNSPAEL-AGLKAGDIITQINDTKITQ------ATQVKTTISLLRVGSTVK 334
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 118
Score = 31.7 bits (71), Expect = 0.046
Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 44 GILVHDIYPEGAAAKD-ARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK 94
+ V ++ + + + GD+ILE+ G R + + ++ T
Sbjct: 45 TVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEEVEDAIKQTSQT 96
Score = 30.6 bits (68), Expect = 0.11
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 4 VPGGIAATD-GRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
I+ + + GD+I+ ++GT VR EEV +K
Sbjct: 52 NRMHISPNNRNAIHPGDRILEINGTPVRTLRVEEVEDAIK 91
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone,
hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A
4a9g_A
Length = 436
Score = 32.2 bits (74), Expect = 0.067
Identities = 35/135 (25%), Positives = 49/135 (36%), Gaps = 36/135 (26%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVPS 103
G V ++ P +AK A +K GD I L G+ + A LR A +P
Sbjct: 264 GAFVSEVLPGSGSAK-AGVKAGDIITSLNGKPLNS------FAELRSRIATTEP------ 310
Query: 104 EPNANATTGEKTTFYFHFQVKLVVLRD------TVTKEDDLLEFVDVELTKKAGKGFGLS 157
G K VKL +LR+ VT + E+ A +G LS
Sbjct: 311 --------GTK--------VKLGLLRNGKPLEVEVTLDTSTSSSASAEMITPALEGATLS 354
Query: 158 LVGRKQGP-GVFISD 171
K G G+ I +
Sbjct: 355 DGQLKDGGKGIKIDE 369
Score = 32.2 bits (74), Expect = 0.072
Identities = 12/71 (16%), Positives = 27/71 (38%), Gaps = 5/71 (7%)
Query: 9 AATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGGILVHDIYPEGAAAKDARLKFGDQI 68
+T +++G + D ++ GI + ++ AA A L+ D I
Sbjct: 333 TSTSSSASAEMITPALEGATLSDGQLKDG----GKGIKIDEVVKGSPAA-QAGLQKDDVI 387
Query: 69 LELTGEDFRNI 79
+ + + +I
Sbjct: 388 IGVNRDRVNSI 398
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone,
DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Length = 345
Score = 32.2 bits (74), Expect = 0.073
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVP 102
G V ++ P +AK A +K GD I L G+ + A LR A +P V
Sbjct: 264 GAFVSEVLPGSGSAK-AGVKAGDIITSLNGKPLNS------FAELRSRIATTEPGTKVK 315
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease,
trypsin, chaperone, PDZ, ATP-independent,
temperature-regulated, periplasm; 2.80A {Escherichia
coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A
3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Length = 448
Score = 31.9 bits (73), Expect = 0.077
Identities = 29/127 (22%), Positives = 41/127 (32%), Gaps = 35/127 (27%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVPS 103
G V + P +AAK A +K GD I L G+ + A LR
Sbjct: 287 GAFVSQVLPNSSAAK-AGIKAGDVITSLNGKPISS------FAALRAQVGTMPV------ 333
Query: 104 EPNANATTGEKTTFYFHFQVKLVVLRD------TVTKEDDLLEFVDVELTKKAGKGFGLS 157
G K + L +LRD + + VD +G +S
Sbjct: 334 --------GSK--------LTLGLLRDGKQVNVNLELQQSSQNQVDSSSIFNGIEGAEMS 377
Query: 158 LVGRKQG 164
G+ QG
Sbjct: 378 NKGKDQG 384
Score = 29.6 bits (67), Expect = 0.49
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNI 79
G++V+++ AA LK GD I+ + +NI
Sbjct: 382 DQGVVVNNVKTGTPAA-QIGLKKGDVIIGANQQAVKNI 418
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 1.70A {Listeria monocytogenes} PDB:
2kjk_A 3i1e_A
Length = 100
Score = 30.0 bits (68), Expect = 0.13
Identities = 23/119 (19%), Positives = 37/119 (31%), Gaps = 39/119 (32%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVPS 103
G+ V + + AA L GD I E+ G F++ K
Sbjct: 8 GVYVMSVKDDVPAAD--VLHAGDLITEIDGNAFKS------SQEFIDYIHSKKV------ 53
Query: 104 EPNANATTGEKTTFYFHFQVKLVVLRDTVTKEDDLLEFVDVELTKKAGK---GFGLSLV 159
G+ VK+ ++ D++LT K G G++LV
Sbjct: 54 --------GDT--------VKINYKHGDKNEQ------ADIKLTAIDKKGTPGIGITLV 90
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria,
peptid module, hydrolase; 2.75A {Homo sapiens} SCOP:
b.36.1.4
Length = 113
Score = 30.0 bits (68), Expect = 0.17
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRN 78
G+L+H + A + A L+ GD IL + + +N
Sbjct: 36 GVLIHKVILGSPAHR-AGLRPGDVILAIGEQMVQN 69
Score = 25.7 bits (57), Expect = 5.2
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQ 34
+ G A G L GD I+++ V++
Sbjct: 43 ILGSPAHRAG-LRPGDVILAIGEQMVQNAED 72
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB:
3nzi_A 3nwu_A 2ytw_A 2joa_A
Length = 332
Score = 30.7 bits (70), Expect = 0.24
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGED 75
G + ++ P+ A LK D I+ + G+
Sbjct: 255 GAYIIEVIPDTPAEA-GGLKENDVIISINGQS 285
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high
affinity ligand, protein BIND; 1.70A {Homo sapiens}
Length = 112
Score = 29.6 bits (67), Expect = 0.25
Identities = 8/32 (25%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGED 75
GI V ++ P + + ++ GD I+++ G
Sbjct: 36 GIYVQEVAPNSPSQR-GGIQDGDIIVKVNGRP 66
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein
structure initiative; NMR
{Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Length = 125
Score = 29.4 bits (66), Expect = 0.33
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQ 34
VPG A L G I S++G + +
Sbjct: 33 VPGSPA--SKVLTPGLVIESINGMPTSNLTT 61
Score = 28.7 bits (64), Expect = 0.53
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNIT 80
G+ + + P A+K L G I + G N+T
Sbjct: 26 GVQIDSVVPGSPASK--VLTPGLVIESINGMPTSNLT 60
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation,
binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4
b.47.1.1
Length = 325
Score = 29.9 bits (68), Expect = 0.35
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRN 78
G+L+H + A + A L+ GD IL + + +N
Sbjct: 257 GVLIHKVILGSPAHR-AGLRPGDVILAIGEQMVQN 290
>3k50_A Putative S41 protease; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative;
2.00A {Bacteroides fragilis nctc 9343}
Length = 403
Score = 30.1 bits (68), Expect = 0.38
Identities = 15/85 (17%), Positives = 30/85 (35%), Gaps = 4/85 (4%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGGI---LVHDIYPEGAAAKDA 60
VPG A G L +G IM ++G + K + E+ + + ++ E
Sbjct: 98 VPGSPAEEAG-LQRGHWIMMMNGDYITKKVESELLQGSTRQLQIGVYKEVVGEDGEVTGG 156
Query: 61 RLKFGDQILELTGEDFRNITHAKAM 85
+ G+ + + H +
Sbjct: 157 VVPIGETTMPASRSLVDKPVHRFEI 181
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium; NMR {Geobacillus thermodenitrificans}
Length = 94
Score = 28.4 bits (64), Expect = 0.41
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRN 78
G+ V + P AA RL+ GD+I + G+
Sbjct: 6 GVYVMSVLPNMPAA--GRLEAGDRIAAIDGQPINT 38
Score = 24.9 bits (55), Expect = 6.6
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQ 34
+P AA GRL GD+I ++DG + Q
Sbjct: 13 LPNMPAA--GRLEAGDRIAAIDGQPINTSEQ 41
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell
membrane, hydrolase, membrane, protease, serine
protease, transmembrane; NMR {Bacillus subtilis}
Length = 91
Score = 28.4 bits (64), Expect = 0.49
Identities = 7/35 (20%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRN 78
GI + A +++ GD+I+ G+++++
Sbjct: 2 GIYASSVVENMPA--KGKIEVGDKIISADGKNYQS 34
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 29.5 bits (66), Expect = 0.76
Identities = 28/122 (22%), Positives = 38/122 (31%), Gaps = 34/122 (27%)
Query: 22 MSVDGTDVRDKSQE---EVATIMKGGILVHDIYPEGA--------------AAKDARLKF 64
M G + S E E+A IM G I H+ +G KD + K+
Sbjct: 840 MEAFG----EFSLEGCVEMAWIM-GFISYHNGNLKGRPYTGWVDSKTKEPVDDKDVKAKY 894
Query: 65 GDQILELTG------EDFRNI-THAKAMAHLRLTPAKAKPCPTVPSEPNANA---TTGEK 114
ILE +G E F K M + P S+ A G+K
Sbjct: 895 ETSILEHSGIRLIEPELFNGYNPEKKEMIQ--EVIVEEDLEPFEASKETAEQFKHQHGDK 952
Query: 115 TT 116
Sbjct: 953 VD 954
>2dka_A Phosphoacetylglucosamine mutase; isomerase; 1.93A {Candida
albicans} PDB: 2dkc_A* 2dkd_A*
Length = 544
Score = 28.4 bits (63), Expect = 1.2
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 13 GRLLKGDQIMSVDGTDVRD-KSQEEVATIMKGGILVHDIYPEGAAAKDARLKFG 65
+LL GD++ ++ ++ Q + I +V Y G++ K
Sbjct: 307 FKLLDGDKLSTLFALFLQQLFKQIDPTKISLNIGVVQTAYANGSSTKYVEDVLK 360
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.1 bits (62), Expect = 1.9
Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 14/62 (22%)
Query: 25 DGTDVRDKSQEEVATIMKGGILVHDIYPEGAAAKDAR--LKFG-----------DQILEL 71
DG+D+R S I+ I+ + E A L FG + +
Sbjct: 464 DGSDLRVLSGSISERIVD-CIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDG 522
Query: 72 TG 73
TG
Sbjct: 523 TG 524
>1tu1_A Hypothetical protein PA0094; structural genomics, PSI, PROT
structure initiative, midwest center for structural
genomic unknown function; 1.95A {Pseudomonas aeruginosa}
SCOP: d.107.1.3
Length = 148
Score = 27.3 bits (60), Expect = 2.0
Identities = 8/42 (19%), Positives = 15/42 (35%)
Query: 121 FQVKLVVLRDTVTKEDDLLEFVDVELTKKAGKGFGLSLVGRK 162
+ V+ RD + ++V +L + G L R
Sbjct: 36 REASFVISRDASQGDAPFADYVARQLENAEKQLPGFKLHKRW 77
>1k32_A Tricorn protease; protein degradation, substrate gating, serine
protease, beta propeller, proteasome, hydrolase; 2.00A
{Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1
b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Length = 1045
Score = 27.8 bits (61), Expect = 2.1
Identities = 6/38 (15%), Positives = 11/38 (28%), Gaps = 2/38 (5%)
Query: 6 GGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
G G I +DG V + + ++
Sbjct: 766 KSPIFEYGIDPTGYLIEDIDGETV--GAGSNIYRVLSE 801
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane
protein, PDZ domain, hydrolase, inner membrane,
membrane, metal-binding; HET: MLY MSE; 0.98A
{Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A
Length = 91
Score = 25.5 bits (56), Expect = 3.9
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQ 34
P A+ G L GD+I+ VDG +
Sbjct: 12 QPNSAASXAG-LQAGDRIVXVDGQPLTQWVT 41
>3i3w_A Phosphoglucosamine mutase; csgid, IDP02164, isomerase, magne
metal-binding, phosphoprotein, structural genomics; HET:
SEP; 2.30A {Francisella tularensis subsp}
Length = 443
Score = 26.7 bits (60), Expect = 4.3
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 12 DGRLLKGDQIMSVDGTDVRDKSQEE--VATIM 41
+G+ + GD I+++ V T M
Sbjct: 251 NGQEIDGDGILNILAQYSDICGGTNGIVGTQM 282
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin,
membrane protein; 1.65A {Homo sapiens}
Length = 209
Score = 26.2 bits (57), Expect = 5.0
Identities = 8/45 (17%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 1 MRAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGGI 45
+R G D I+S++G+ + +K + + ++K +
Sbjct: 21 LRVQENSPGHRAGLEPFFDFIVSINGSRL-NKDNDTLKDLLKANV 64
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type
2 secretion system, protein transport, membrane
protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Length = 105
Score = 25.3 bits (55), Expect = 5.9
Identities = 7/30 (23%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 5 PGGIAATDGRLLKGDQIMSVDGTDVRDKSQ 34
+ + G L GD ++++G D+ D +
Sbjct: 46 DPVLFESIG-LQDGDMAVALNGLDLTDPNV 74
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics,
PSI, protein structure initiative; 2.00A {Mycobacterium
tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Length = 324
Score = 26.1 bits (58), Expect = 6.4
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQ 34
V GG AA G + KG + VD +
Sbjct: 250 VAGGAAANAG-VPKGVVVTKVDDRPINSADA 279
>3pdk_A Phosphoglucosamine mutase; 4-domain architecture, mixed A/B fold,
phosphohexomutase; 2.70A {Bacillus anthracis}
Length = 469
Score = 25.9 bits (58), Expect = 7.6
Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Query: 12 DGRLLKGDQIMSVDGTDVRDKSQEE----VATIM 41
G ++ GDQIM + +++ Q + V+T+M
Sbjct: 273 KGNIVDGDQIMFICAKYMKETGQLKHNTVVSTVM 306
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.136 0.385
Gapped
Lambda K H
0.267 0.0749 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,675,907
Number of extensions: 158014
Number of successful extensions: 887
Number of sequences better than 10.0: 1
Number of HSP's gapped: 836
Number of HSP's successfully gapped: 517
Length of query: 175
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 88
Effective length of database: 4,272,666
Effective search space: 375994608
Effective search space used: 375994608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.5 bits)