Query psy15210
Match_columns 278
No_of_seqs 179 out of 1516
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 23:32:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15210.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15210hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK08787 peptide chain release 100.0 1.1E-91 2.4E-96 653.9 29.6 272 1-272 34-305 (313)
2 COG0216 PrfA Protein chain rel 100.0 2.4E-91 5.2E-96 651.3 25.5 275 1-275 77-357 (363)
3 PRK07342 peptide chain release 100.0 3.3E-90 7.2E-95 650.8 29.8 273 1-273 57-330 (339)
4 PRK06746 peptide chain release 100.0 7E-90 1.5E-94 645.8 30.7 270 1-270 55-325 (326)
5 PRK05589 peptide chain release 100.0 9.8E-90 2.1E-94 645.5 31.0 270 1-270 54-324 (325)
6 TIGR00020 prfB peptide chain r 100.0 1.5E-88 3.4E-93 646.4 31.0 270 1-270 93-363 (364)
7 PRK00578 prfB peptide chain re 100.0 2E-88 4.3E-93 646.6 30.5 273 1-273 93-366 (367)
8 TIGR00019 prfA peptide chain r 100.0 1.6E-85 3.4E-90 624.6 30.3 272 1-273 76-352 (360)
9 PRK00591 prfA peptide chain re 100.0 2.2E-84 4.7E-89 617.0 31.2 274 1-275 76-354 (359)
10 KOG2726|consensus 100.0 1.6E-78 3.5E-83 574.4 24.1 271 2-272 106-378 (386)
11 COG1186 PrfB Protein chain rel 100.0 4.9E-75 1.1E-79 523.0 18.9 237 34-270 1-238 (239)
12 TIGR03072 release_prfH putativ 100.0 1.2E-66 2.6E-71 460.9 25.1 198 34-236 1-199 (200)
13 PRK08179 prfH peptide chain re 100.0 4.7E-66 1E-70 457.1 24.3 196 34-234 2-198 (200)
14 PF00472 RF-1: RF-1 domain; I 100.0 2.5E-35 5.5E-40 240.2 12.1 109 135-243 4-113 (113)
15 PF03462 PCRF: PCRF domain; I 100.0 2.4E-28 5.1E-33 199.6 11.6 101 1-101 11-115 (115)
16 PRK09256 hypothetical protein; 99.9 4.5E-24 9.8E-29 179.7 4.3 102 137-245 7-134 (138)
17 KOG3429|consensus 99.7 7E-17 1.5E-21 138.2 6.8 73 135-207 32-129 (172)
18 PF13710 ACT_5: ACT domain; PD 60.0 27 0.00059 25.2 5.1 38 55-92 6-43 (63)
19 PRK11152 ilvM acetolactate syn 57.4 29 0.00063 26.4 5.1 42 55-96 17-58 (76)
20 PRK06737 acetolactate synthase 55.4 36 0.00078 26.0 5.3 39 55-93 16-54 (76)
21 PRK13562 acetolactate synthase 47.1 50 0.0011 25.8 5.0 38 56-93 17-55 (84)
22 PF04350 PilO: Pilus assembly 40.1 2E+02 0.0043 23.2 8.5 59 51-109 52-115 (144)
23 PRK08178 acetolactate synthase 34.0 81 0.0018 25.3 4.4 39 57-95 24-62 (96)
24 PF10213 MRP-S28: Mitochondria 33.7 2.8E+02 0.0061 23.1 7.9 33 174-206 60-93 (127)
25 PF00587 tRNA-synt_2b: tRNA sy 33.3 1.1E+02 0.0024 25.7 5.6 45 45-89 121-166 (173)
26 KOG3409|consensus 30.9 85 0.0018 28.0 4.4 62 99-160 98-166 (193)
27 KOG1697|consensus 30.2 41 0.00089 31.6 2.5 18 116-133 154-171 (275)
28 PF02749 QRPTase_N: Quinolinat 28.0 36 0.00078 26.1 1.5 60 33-101 17-77 (88)
29 PF02815 MIR: MIR domain; Int 27.8 1E+02 0.0022 26.6 4.5 37 148-184 122-158 (190)
30 PF08169 RBB1NT: RBB1NT (NUC16 27.3 75 0.0016 25.5 3.2 45 104-153 8-52 (96)
31 PF04149 DUF397: Domain of unk 25.9 1.1E+02 0.0024 21.8 3.6 19 164-182 15-33 (56)
32 COG3978 Acetolactate synthase 25.7 1.1E+02 0.0023 24.1 3.6 49 52-100 14-62 (86)
33 COG0279 GmhA Phosphoheptose is 24.8 3E+02 0.0066 24.4 6.8 35 37-73 44-80 (176)
34 smart00322 KH K homology RNA-b 24.2 1.3E+02 0.0029 20.0 3.8 45 154-201 19-68 (69)
35 COG0103 RpsI Ribosomal protein 24.0 67 0.0014 27.2 2.5 17 115-131 8-24 (130)
36 smart00472 MIR Domain in ryano 22.5 84 0.0018 21.5 2.4 22 163-184 6-27 (57)
37 PF03101 FAR1: FAR1 DNA-bindin 21.7 1.4E+02 0.003 22.2 3.7 38 56-93 1-39 (91)
38 COG1847 Jag Predicted RNA-bind 20.2 4.5E+02 0.0097 24.0 7.1 64 29-98 42-105 (208)
No 1
>PRK08787 peptide chain release factor 2; Provisional
Probab=100.00 E-value=1.1e-91 Score=653.92 Aligned_cols=272 Identities=57% Similarity=0.959 Sum_probs=262.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCceEEEEEcCCChHHHHHHHHHHHHHHHHHHhhcCcEEEEeeecCCCcC
Q psy15210 1 MLKEIEDNTNKLNNKIKEIEFHQFFNDPLDFNNCFIDIQSGAGGIEAQDWASMLLRQYLRYCERKGFIVEILEKSNGEIT 80 (278)
Q Consensus 1 m~~e~~~~~~~~~~~l~~~~~~~ll~~~~d~~~~~leI~aG~Gg~Ea~~~~~~L~~mY~~~a~~~g~~~~~v~~~~~~~~ 80 (278)
|++|+++++..++..++.++++.||++|+|.++|+|+|+||+||+||++||++||+||++||+++||++++++..+++.+
T Consensus 34 ~~~~~~~e~~~l~~~~~~le~~~lL~~~~D~~~a~leI~aG~GG~Ea~~~a~~LlrMY~r~A~~~g~~~evi~~~~g~~~ 113 (313)
T PRK08787 34 TALAVIADLDKYQAHVEKLEFQRMFSGQMDGANAFVDIQAGAGGTEAQDWAEILLRMYLRWAESRGWKTELMEVSGGEVA 113 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCcEEEEECCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEecCCCCCc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEEEeccchhcccccccceeeEeeeCCCCCCCCceeeeeEEEEecccCccccCcCCCCCeeEEEeeecCCCCccc
Q psy15210 81 GIKTVTLKIKGKYAYGFLKSESGIHRLVRKSPFDSSNNRHTSFSSLFVYPEINNLINININPADLRIDTYRASGAGGQHI 160 (278)
Q Consensus 81 g~~sa~~~i~G~~ay~~lk~E~GvHr~~rvs~~~~~~kr~ts~a~V~v~P~~~~~~~~~i~~~dl~~~~~RssGpGGQ~V 160 (278)
|++||++.|+|++||++|++|+|||||||+|||+++||||||||+|.|+|.+++.+++.|+++||+++|+||||||||||
T Consensus 114 Giksa~l~I~G~~ayg~lk~E~GvHRv~R~sp~~s~~rrhTsfasV~V~P~~~~~~~i~i~~~dl~~~~~RssG~GGQ~V 193 (313)
T PRK08787 114 GIKSATVRIEGEYAYGWLKTEIGVHRLVRKSPFDSDNRRHTSFTSVFVSPEVDDNIEIDINPADLRTDVYRSSGAGGQHV 193 (313)
T ss_pred eeeEEEEEEecccHHHHHhhccCeeEEEecCCCCCCCCEEeeeEEEEEecCcCcccccccChhHeEEEEEECCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999997777899999999999999999999999
Q ss_pred cccCceEEEEEcCCeeEEEEcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCceeeEEecCCCccc
Q psy15210 161 NKTDSAVRITHIPTGIVVQCQNDRSQHRNKSEAWDMLKSKLYKLKLQYQIKEKKKLEDTKKDIKWGYQIRSYVLDKSRIK 240 (278)
Q Consensus 161 Nk~~saVrl~h~Ptgi~v~~~~~RSq~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~g~~iRtY~~~~~rVk 240 (278)
|||+|||||+|+||||+|+|+++|||++||+.|+++|+++|++.+.+++..+.+..+..+.+++||++||||||+|++||
T Consensus 194 Nkt~saVri~H~Ptgi~v~~q~eRSQ~~Nk~~A~~~L~~~L~~~~~e~~~~~~~~~~~~k~~i~~g~qIRtY~f~~~~V~ 273 (313)
T PRK08787 194 NKTESAVRITHIPTNTVVACQTGRSQHQNRDNAMKMLAAKLYELEVQKRNAEKDALEATKSDIGWGSQIRNYVLDQSRIK 273 (313)
T ss_pred CCEeeEEEEEECCCcEEEEECCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhCcccccccceeCCCCcce
Confidence 99999999999999999999999999999999999999999999998888877766666788999999999999999999
Q ss_pred cccccccccCcccccCCCcHHHHHHHHHhhhh
Q psy15210 241 DLRTNLETKNIKDILDGDLDNFIIASLKQHLL 272 (278)
Q Consensus 241 D~R~~~~~~~~~~vl~G~ld~~i~~~~~~~~~ 272 (278)
|||||++++|+++||+|+||+||++++.|..+
T Consensus 274 DhRtg~~~~~l~~vldG~ld~fI~a~l~~~~~ 305 (313)
T PRK08787 274 DLRTGIERSDTQKVLDGDLDEFVEASLKAGLA 305 (313)
T ss_pred eeccCceEcChhHhhCCChHHHHHHHHHHHHh
Confidence 99999999999999999999999999999654
No 2
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.4e-91 Score=651.27 Aligned_cols=275 Identities=41% Similarity=0.654 Sum_probs=256.1
Q ss_pred ChhHHHHHHHHHHHHHHHHH--Hhh--cCCCCCCCCceEEEEEcCCChHHHHHHHHHHHHHHHHHHhhcCcEEEEeeecC
Q psy15210 1 MLKEIEDNTNKLNNKIKEIE--FHQ--FFNDPLDFNNCFIDIQSGAGGIEAQDWASMLLRQYLRYCERKGFIVEILEKSN 76 (278)
Q Consensus 1 m~~e~~~~~~~~~~~l~~~~--~~~--ll~~~~d~~~~~leI~aG~Gg~Ea~~~~~~L~~mY~~~a~~~g~~~~~v~~~~ 76 (278)
|.++|++|+..++..+..++ |+. |+++|+|..+|+|||+||+||+||++||++||+||.+||+.+||++++++.++
T Consensus 77 m~ema~~Ei~~~~~~~~~le~~L~~lLlPkDpnd~knvilEIRagtGGdEAalFagDLfrMY~rYAe~kgWk~ei~s~se 156 (363)
T COG0216 77 MREMAEEEIKELEAKIEELEEELKILLLPKDPNDDKNIILEIRAGTGGDEAALFAGDLFRMYSRYAESKGWKVEILSASE 156 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCeEEEEecCCCchHHHHHHHHHHHHHHHHHHhCCCEEEEeecCc
Confidence 67899999999999999986 444 44799999999999999999999999999999999999999999999999999
Q ss_pred CCcCceeEEEEEEeccchhcccccccceeeEeeeCCCCCCCCceeeeeEEEEecccCccccCcCCCCCeeEEEeeecCCC
Q psy15210 77 GEITGIKTVTLKIKGKYAYGFLKSESGIHRLVRKSPFDSSNNRHTSFSSLFVYPEINNLINININPADLRIDTYRASGAG 156 (278)
Q Consensus 77 ~~~~g~~sa~~~i~G~~ay~~lk~E~GvHr~~rvs~~~~~~kr~ts~a~V~v~P~~~~~~~~~i~~~dl~~~~~RssGpG 156 (278)
++.+||+.+++.|+|.+||+.||+|+|||||||||.|+++||+|||+|+|+|+|++++..++.|+|+||+|++|||||+|
T Consensus 157 ~~~GG~kEii~~I~G~gvys~LKfEsGvHRVQRVP~TEsqGRIHTStaTVaVlPE~ee~~ei~I~~~DlrIDt~RsSGaG 236 (363)
T COG0216 157 SELGGYKEIIASISGKGVYSRLKFESGVHRVQRVPATESQGRIHTSAATVAVLPEVEEVEEIEINPKDLRIDTFRSSGAG 236 (363)
T ss_pred ccCCCceEEEEEEeccchhhhhhhccCccceeccccccCCCceeecceeEEeccCCCcccccccChHHceeeeeecCCCC
Confidence 99999999999999999999999999999999999999999999999999999999766689999999999999999999
Q ss_pred CccccccCceEEEEEcCCeeEEEEcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hccCCCCCCceeeEEecC
Q psy15210 157 GQHINKTDSAVRITHIPTGIVVQCQNDRSQHRNKSEAWDMLKSKLYKLKLQYQIKEKKKLE-DTKKDIKWGYQIRSYVLD 235 (278)
Q Consensus 157 GQ~VNk~~saVrl~h~Ptgi~v~~~~~RSq~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~~-~~~~~~~~g~~iRtY~~~ 235 (278)
|||||+|+|||||||+||||+|+||++|||++||+.||+.|+++|++.+.++++++.+..| .+.....|+++||||||+
T Consensus 237 GQhVNtTdSAVRiTHlPTGIvV~cQderSQ~kNk~kAmkvL~ARl~~~~~~~~~~~~~~~RksqVGSGDRSErIRTYNfP 316 (363)
T COG0216 237 GQHVNTTDSAVRITHLPTGIVVECQDERSQHKNKAKAMKVLRARLYDAERQKAQAEEASERKSQVGSGDRSERIRTYNFP 316 (363)
T ss_pred CCCcCccchhheeeecCCceEEEecchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhccCCC
Confidence 9999999999999999999999999999999999999999999999999888777765544 233444567799999999
Q ss_pred CCccccccccccccCcccccCC-CcHHHHHHHHHhhhhccc
Q psy15210 236 KSRIKDLRTNLETKNIKDILDG-DLDNFIIASLKQHLLNKI 275 (278)
Q Consensus 236 ~~rVkD~R~~~~~~~~~~vl~G-~ld~~i~~~~~~~~~~~~ 275 (278)
||||||||+|+++++|+.||+| +||++|++++.+..++.+
T Consensus 317 QnRVTDHRI~lTl~kLd~vm~gG~LDeii~aLi~~~q~~~L 357 (363)
T COG0216 317 QNRVTDHRINLTLYKLDEVMEGGKLDEIIDALIAEDQAEQL 357 (363)
T ss_pred CCcccchhcccccccHHHHhccCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999995 999999999999877654
No 3
>PRK07342 peptide chain release factor 2; Provisional
Probab=100.00 E-value=3.3e-90 Score=650.85 Aligned_cols=273 Identities=51% Similarity=0.900 Sum_probs=263.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCceEEEEEcCCChHHHHHHHHHHHHHHHHHHhhcCcEEEEeeecCCCcC
Q psy15210 1 MLKEIEDNTNKLNNKIKEIEFHQFFNDPLDFNNCFIDIQSGAGGIEAQDWASMLLRQYLRYCERKGFIVEILEKSNGEIT 80 (278)
Q Consensus 1 m~~e~~~~~~~~~~~l~~~~~~~ll~~~~d~~~~~leI~aG~Gg~Ea~~~~~~L~~mY~~~a~~~g~~~~~v~~~~~~~~ 80 (278)
|+++|.+++..+++.++.+++..||.+|+|.++|+|+|+||+||.||++||++||+||++||+++||++++++..+++.+
T Consensus 57 l~~~a~~e~~~l~~~l~~~el~~lL~~~~D~~~~~leI~aG~GG~Ea~~~a~~Ll~mY~~~a~~~g~~~~vi~~~~~~~~ 136 (339)
T PRK07342 57 IVEDAEKTIRDLKDEIDRRQIDALLSGEADANDTYLEVHAGAGGTESQDWASMLLRMYTRWAERQGRKVEVLEVHDGEEA 136 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCeeEEEECCCCcHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999989
Q ss_pred ceeEEEEEEeccchhcccccccceeeEeeeCCCCCCCCceeeeeEEEEecccCccccCcCCCCCeeEEEeeecCCCCccc
Q psy15210 81 GIKTVTLKIKGKYAYGFLKSESGIHRLVRKSPFDSSNNRHTSFSSLFVYPEINNLINININPADLRIDTYRASGAGGQHI 160 (278)
Q Consensus 81 g~~sa~~~i~G~~ay~~lk~E~GvHr~~rvs~~~~~~kr~ts~a~V~v~P~~~~~~~~~i~~~dl~~~~~RssGpGGQ~V 160 (278)
||++|+|.|+|++||++|++|+|||||||+|||+++||||||||+|.|+|.+++.+++.|+++||+++++||||||||||
T Consensus 137 g~ksa~l~i~G~~ay~~lk~E~GvHrv~rvsp~~~~~rrhTs~a~V~VlP~~~~~~~~~i~~~dl~~~~~RssG~GGQ~V 216 (339)
T PRK07342 137 GIKSATILVKGHNAYGWLKTESGVHRLVRISPYDSNARRHTSFASIWVYPVIDDNIEVDVNESDVRIDTYRSSGAGGQHV 216 (339)
T ss_pred ceEEEEEEEeccCHHHHHhhccceeEEEecCCCCCCCCeEeEEEEEEEEcCCCcccccccCcccEEEEEEECCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999997667899999999999999999999999
Q ss_pred cccCceEEEEEcCCeeEEEEcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCceeeEEec-CCCcc
Q psy15210 161 NKTDSAVRITHIPTGIVVQCQNDRSQHRNKSEAWDMLKSKLYKLKLQYQIKEKKKLEDTKKDIKWGYQIRSYVL-DKSRI 239 (278)
Q Consensus 161 Nk~~saVrl~h~Ptgi~v~~~~~RSq~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~g~~iRtY~~-~~~rV 239 (278)
|||+|||||+|+||||+|.|+++|||++||+.|+++|+++|++.+.+++..+.+..+.++.+++||++||||+| ++++|
T Consensus 217 Nkt~saVrl~H~ptgi~v~~~~eRSQ~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~~~~~~~i~~g~~IRtY~~~p~~rV 296 (339)
T PRK07342 217 NTTDSAVRITHIPTGIVVQCQQERSQHKNRAKAWSMLRARLYEEELKKREEATNAAAASKTDIGWGHQIRSYVLQPYQLV 296 (339)
T ss_pred cceeeeEEEEEcCCcEEEEECCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCCcCCccCCCCcee
Confidence 99999999999999999999999999999999999999999999999888888877888999999999999999 55789
Q ss_pred ccccccccccCcccccCCCcHHHHHHHHHhhhhc
Q psy15210 240 KDLRTNLETKNIKDILDGDLDNFIIASLKQHLLN 273 (278)
Q Consensus 240 kD~R~~~~~~~~~~vl~G~ld~~i~~~~~~~~~~ 273 (278)
||||||++++|++.||+|+||+||++++.|+...
T Consensus 297 tDhRtg~~~~~l~~vl~G~Ld~~I~a~l~~~~~~ 330 (339)
T PRK07342 297 KDLRTGVESTNPQDVLDGDLNEFMEAALAHRISG 330 (339)
T ss_pred eeeccCceecChHHhhCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999998654
No 4
>PRK06746 peptide chain release factor 2; Provisional
Probab=100.00 E-value=7e-90 Score=645.81 Aligned_cols=270 Identities=52% Similarity=0.847 Sum_probs=262.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCceEEEEEcCCChHHHHHHHHHHHHHHHHHHhhcCcEEEEeeecCCCcC
Q psy15210 1 MLKEIEDNTNKLNNKIKEIEFHQFFNDPLDFNNCFIDIQSGAGGIEAQDWASMLLRQYLRYCERKGFIVEILEKSNGEIT 80 (278)
Q Consensus 1 m~~e~~~~~~~~~~~l~~~~~~~ll~~~~d~~~~~leI~aG~Gg~Ea~~~~~~L~~mY~~~a~~~g~~~~~v~~~~~~~~ 80 (278)
|.+||++++..+++.++.+++..||++|+|.++|+|+|+||+||+||++||++||+||++||+++||++++++..+++.+
T Consensus 55 ~~~~a~~e~~~l~~~l~~le~~~l~~~~~D~~~~~leI~aG~GG~Ea~~~a~~Ll~MY~r~a~~~g~~~evi~~~~~~~~ 134 (326)
T PRK06746 55 LHEELESEVKGLIQEMNEYELQLLLSDPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRWAEKRGFKVETVDYLPGDEA 134 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCeEEEEECCCCcHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999989
Q ss_pred ceeEEEEEEeccchhcccccccceeeEeeeCCCCCCCCceeeeeEEEEecccCccccCcCCCCCeeEEEeeecCCCCccc
Q psy15210 81 GIKTVTLKIKGKYAYGFLKSESGIHRLVRKSPFDSSNNRHTSFSSLFVYPEINNLINININPADLRIDTYRASGAGGQHI 160 (278)
Q Consensus 81 g~~sa~~~i~G~~ay~~lk~E~GvHr~~rvs~~~~~~kr~ts~a~V~v~P~~~~~~~~~i~~~dl~~~~~RssGpGGQ~V 160 (278)
|++||+|.|+|++||++|++|+|||||||+|||+++||||||||+|.|+|.+++.+++.|+++||+++|+||||||||||
T Consensus 135 g~ksa~l~i~G~~ay~~lk~E~GvHrv~Rvsp~~s~~rrhTsfa~V~v~P~~~~~~~i~i~~~dl~~~~~rssG~GGQ~v 214 (326)
T PRK06746 135 GIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFVSCEVVPEFNDEVEIEVRTEDLKIDTYRASGAGGQHV 214 (326)
T ss_pred ceEEEEEEEeccCHHHHHhhccceEEEEecCCCCCCCCeEeeEEEEEEecCcCCccccccChHHeEEEEEeCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999997678999999999999999999999999
Q ss_pred cccCceEEEEEcCCeeEEEEcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCceeeEEecCC-Ccc
Q psy15210 161 NKTDSAVRITHIPTGIVVQCQNDRSQHRNKSEAWDMLKSKLYKLKLQYQIKEKKKLEDTKKDIKWGYQIRSYVLDK-SRI 239 (278)
Q Consensus 161 Nk~~saVrl~h~Ptgi~v~~~~~RSq~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~g~~iRtY~~~~-~rV 239 (278)
|||+|||||+|+||||+|+|+++|||++||+.|+++|+++|++.+.+++....+..|+.+...+||++||||||++ ++|
T Consensus 215 Nkt~saVrl~h~ptgi~v~~q~~RSQ~~Nk~~A~~~L~akL~~~~~~~~~~~~~~~r~~~~~~~rg~~IRtYnf~p~~rV 294 (326)
T PRK06746 215 NTTDSAVRITHTPTNTVVTCQSERSQIKNREHAMKMLKAKLYQKKLEEQQAELDEIRGEQKEIGWGSQIRSYVFHPYSLV 294 (326)
T ss_pred cceeeEEEEEEeCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccCCCeEEEECCCCcee
Confidence 9999999999999999999999999999999999999999999999999999998998888999999999999955 779
Q ss_pred ccccccccccCcccccCCCcHHHHHHHHHhh
Q psy15210 240 KDLRTNLETKNIKDILDGDLDNFIIASLKQH 270 (278)
Q Consensus 240 kD~R~~~~~~~~~~vl~G~ld~~i~~~~~~~ 270 (278)
||||||++++|++.||+|+||+||+++++|+
T Consensus 295 tDhR~~~~~~~l~~vl~G~ld~~I~~~~~~~ 325 (326)
T PRK06746 295 KDHRTNTEVGNVQAVMDGEIDPFIDAYLRSR 325 (326)
T ss_pred eeeecCceecChHHhhCCCHHHHHHHHHHcc
Confidence 9999999999999999999999999999875
No 5
>PRK05589 peptide chain release factor 2; Provisional
Probab=100.00 E-value=9.8e-90 Score=645.50 Aligned_cols=270 Identities=52% Similarity=0.860 Sum_probs=259.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCceEEEEEcCCChHHHHHHHHHHHHHHHHHHhhcCcEEEEeeecCCCcC
Q psy15210 1 MLKEIEDNTNKLNNKIKEIEFHQFFNDPLDFNNCFIDIQSGAGGIEAQDWASMLLRQYLRYCERKGFIVEILEKSNGEIT 80 (278)
Q Consensus 1 m~~e~~~~~~~~~~~l~~~~~~~ll~~~~d~~~~~leI~aG~Gg~Ea~~~~~~L~~mY~~~a~~~g~~~~~v~~~~~~~~ 80 (278)
|.+||.+++.++++.++.+++..||++|+|..+|+|+|+||+||+||++||++|++||++||+++||++++++..+++.+
T Consensus 54 ~~~~a~~e~~~l~~~l~~~e~~~l~~~~~D~~~~~leI~aG~GG~Ea~~fa~~L~~mY~~~a~~~g~~~~vi~~~~~~~~ 133 (325)
T PRK05589 54 MKKEIISEVKNIKEEIDRFKIETLLSGEYDRNNAILTLHSGVGGTDAQDWTEMLLRMYTRWAEKKGYKVEIIDLLEGDEA 133 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCCCeEEEEECCCCchHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999989
Q ss_pred ceeEEEEEEeccchhcccccccceeeEeeeCCCCCCCCceeeeeEEEEecccCccccCcCCCCCeeEEEeeecCCCCccc
Q psy15210 81 GIKTVTLKIKGKYAYGFLKSESGIHRLVRKSPFDSSNNRHTSFSSLFVYPEINNLINININPADLRIDTYRASGAGGQHI 160 (278)
Q Consensus 81 g~~sa~~~i~G~~ay~~lk~E~GvHr~~rvs~~~~~~kr~ts~a~V~v~P~~~~~~~~~i~~~dl~~~~~RssGpGGQ~V 160 (278)
||+||++.|+|++||++|++|+|||||||+|||+++||||||||+|.|+|.+++..++.|+++||+++++||||||||||
T Consensus 134 g~ks~~~~i~G~~ay~~lk~E~GvHrv~r~s~~~~~~rr~ts~a~V~VlP~~~~~~~~~i~~~dl~~~~~rssG~GGQ~V 213 (325)
T PRK05589 134 GIKSVTLKITGEFAYGYLKAEKGIHRLVRISPFNANGKRQTSFASVEVLPELTDDQDIEIRSEDLKIDTYRAGGAGGQHV 213 (325)
T ss_pred ceEEEEEEEeccCHHHHHhhccceEEEEEcCCCCCCCCeEeeeEEEEEecCcCccccccCCchheEEEEeeCCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999997666899999999999999999999999
Q ss_pred cccCceEEEEEcCCeeEEEEcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCceeeEEecC-CCcc
Q psy15210 161 NKTDSAVRITHIPTGIVVQCQNDRSQHRNKSEAWDMLKSKLYKLKLQYQIKEKKKLEDTKKDIKWGYQIRSYVLD-KSRI 239 (278)
Q Consensus 161 Nk~~saVrl~h~Ptgi~v~~~~~RSq~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~g~~iRtY~~~-~~rV 239 (278)
|||+|||||+|+||||+|.|+++|||++||+.|+++|+++|++.+.++...+.++.|..+.+++||++||||||+ +++|
T Consensus 214 Nkt~saVrl~H~ptgi~v~~q~eRSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~r~~~~~~~~g~~IRtY~~~p~~rV 293 (325)
T PRK05589 214 NKTESAVRITHIPTGIVVQCQNERSQHSNKETAMKMLKSKLVELKERAHKEKIEDLTGELKDMGWGSQIRSYVFHPYNLV 293 (325)
T ss_pred cceeeEEEEEECCCCEEEEECCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCceeeECCCCcee
Confidence 999999999999999999999999999999999999999999999888888888888777889999999999995 5789
Q ss_pred ccccccccccCcccccCCCcHHHHHHHHHhh
Q psy15210 240 KDLRTNLETKNIKDILDGDLDNFIIASLKQH 270 (278)
Q Consensus 240 kD~R~~~~~~~~~~vl~G~ld~~i~~~~~~~ 270 (278)
||||||++++|++.||+|+||+||++++.|.
T Consensus 294 tDhR~g~~~~~l~~vl~G~Ld~~I~a~l~~~ 324 (325)
T PRK05589 294 KDHRTGVETSNVDSVMDGDIDNFITQYLKGN 324 (325)
T ss_pred eeeccCceecChHHhhCCCHHHHHHHHHhhc
Confidence 9999999999999999999999999999874
No 6
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=100.00 E-value=1.5e-88 Score=646.39 Aligned_cols=270 Identities=60% Similarity=0.972 Sum_probs=262.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCceEEEEEcCCChHHHHHHHHHHHHHHHHHHhhcCcEEEEeeecCCCcC
Q psy15210 1 MLKEIEDNTNKLNNKIKEIEFHQFFNDPLDFNNCFIDIQSGAGGIEAQDWASMLLRQYLRYCERKGFIVEILEKSNGEIT 80 (278)
Q Consensus 1 m~~e~~~~~~~~~~~l~~~~~~~ll~~~~d~~~~~leI~aG~Gg~Ea~~~~~~L~~mY~~~a~~~g~~~~~v~~~~~~~~ 80 (278)
|+++|.+++.++++.++.++++.||++|+|..+|+|+|+||+||.||++||++||+||++||+++||++++++..+++.+
T Consensus 93 ~~~~a~~e~~~l~~~l~~le~~~ll~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~evi~~~~~~~~ 172 (364)
T TIGR00020 93 TFNELDAELKALEKKLAELELRTMLSGEYDANNAYLTIQAGAGGTEAQDWASMLYRMYLRWAERRGFKVEIIDYSEGEEA 172 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCeeEEEECCCCcHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCC
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999989
Q ss_pred ceeEEEEEEeccchhcccccccceeeEeeeCCCCCCCCceeeeeEEEEecccCccccCcCCCCCeeEEEeeecCCCCccc
Q psy15210 81 GIKTVTLKIKGKYAYGFLKSESGIHRLVRKSPFDSSNNRHTSFSSLFVYPEINNLINININPADLRIDTYRASGAGGQHI 160 (278)
Q Consensus 81 g~~sa~~~i~G~~ay~~lk~E~GvHr~~rvs~~~~~~kr~ts~a~V~v~P~~~~~~~~~i~~~dl~~~~~RssGpGGQ~V 160 (278)
|+++|++.|+|++||++|++|+|||||||+|||+++||||||||+|+|+|.+++.+++.|+++||+++++||||||||||
T Consensus 173 g~ks~~~~i~G~~ay~~lk~E~GvHrv~rvs~~~~~~rrhts~a~V~vlP~~~~~~~~~i~~~d~~~~~~rssG~GGQ~V 252 (364)
T TIGR00020 173 GIKSVTILIKGPYAYGYLKSEQGVHRLVRISPFDANGRRHTSFASVFVMPEVDDDIDIEIKPEDLRIDTYRASGAGGQHV 252 (364)
T ss_pred ceEEEEEEEeccCHHHHHhhccceEEEEecCCCCCCCCeEeeeEEEEEecCCCcccceecccccEEEEEeeCCCCCCccc
Confidence 99999999999999999999999999999999999999999999999999996668899999999999999999999999
Q ss_pred cccCceEEEEEcCCeeEEEEcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCceeeEEecCC-Ccc
Q psy15210 161 NKTDSAVRITHIPTGIVVQCQNDRSQHRNKSEAWDMLKSKLYKLKLQYQIKEKKKLEDTKKDIKWGYQIRSYVLDK-SRI 239 (278)
Q Consensus 161 Nk~~saVrl~h~Ptgi~v~~~~~RSq~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~g~~iRtY~~~~-~rV 239 (278)
|||+|||||+|+||||+|+|+++|||++||+.|+++|+++|++.+.+++....+..|..+.+++||++||||||++ +||
T Consensus 253 Nkt~saVri~H~ptgi~v~~q~~RSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~r~~~~~~~rg~~IRtY~~~~~~rV 332 (364)
T TIGR00020 253 NKTDSAVRITHIPTGIVVQCQNDRSQHKNKDSAMKVLKAKLYELEMEKEQAEKDAKEGEKSEIGWGSQIRSYVLHPYSMV 332 (364)
T ss_pred cccceEEEEEECCCcEEEEECCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccCCeEEEECCCCCcc
Confidence 9999999999999999999999999999999999999999999999999888888888889999999999999966 789
Q ss_pred ccccccccccCcccccCCCcHHHHHHHHHhh
Q psy15210 240 KDLRTNLETKNIKDILDGDLDNFIIASLKQH 270 (278)
Q Consensus 240 kD~R~~~~~~~~~~vl~G~ld~~i~~~~~~~ 270 (278)
||||||++++|++.||+|+||+||++++.|+
T Consensus 333 tDhR~g~~~~~l~~vl~G~Ld~~I~a~~~~~ 363 (364)
T TIGR00020 333 KDLRTGYETGNVQAVLDGDIDQFIEAYLKWK 363 (364)
T ss_pred cccccCCeecChHHHhCCChHHHHHHHHhhh
Confidence 9999999999999999999999999999985
No 7
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=100.00 E-value=2e-88 Score=646.61 Aligned_cols=273 Identities=60% Similarity=0.955 Sum_probs=264.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCceEEEEEcCCChHHHHHHHHHHHHHHHHHHhhcCcEEEEeeecCCCcC
Q psy15210 1 MLKEIEDNTNKLNNKIKEIEFHQFFNDPLDFNNCFIDIQSGAGGIEAQDWASMLLRQYLRYCERKGFIVEILEKSNGEIT 80 (278)
Q Consensus 1 m~~e~~~~~~~~~~~l~~~~~~~ll~~~~d~~~~~leI~aG~Gg~Ea~~~~~~L~~mY~~~a~~~g~~~~~v~~~~~~~~ 80 (278)
|+++|.+++..+++.++.++++.||++|+|..+|+|+|+||+||+||++||++||+||.+||+.+||++++++..+++.+
T Consensus 93 l~~~a~~e~~~l~~~l~~le~~~ll~~~~D~~~~~leI~aG~GG~Ea~lfa~~L~~mY~~~a~~~g~~~evi~~~~~~~g 172 (367)
T PRK00578 93 TLAEAEAELKALEKKLAALELERLLSGEYDANNAILTIHAGAGGTEAQDWASMLLRMYLRWAERHGFKVEVLDYSEGEEA 172 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCeEEEEecCCCcHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999989
Q ss_pred ceeEEEEEEeccchhcccccccceeeEeeeCCCCCCCCceeeeeEEEEecccCccccCcCCCCCeeEEEeeecCCCCccc
Q psy15210 81 GIKTVTLKIKGKYAYGFLKSESGIHRLVRKSPFDSSNNRHTSFSSLFVYPEINNLINININPADLRIDTYRASGAGGQHI 160 (278)
Q Consensus 81 g~~sa~~~i~G~~ay~~lk~E~GvHr~~rvs~~~~~~kr~ts~a~V~v~P~~~~~~~~~i~~~dl~~~~~RssGpGGQ~V 160 (278)
|+++|++.|+|++||++|++|+|||||||+|||+++||||||||+|+|+|.+++..++.|+++||+++++||||||||||
T Consensus 173 g~ks~~~~i~G~~a~~~lk~E~GvHrvqrvs~~~~~~r~hts~~~V~vlP~~~~~~~~~i~~~dl~~~~~rssGpGGQ~v 252 (367)
T PRK00578 173 GIKSATFKIKGPYAYGYLKSETGVHRLVRISPFDSAGRRHTSFASVEVYPEVDDTIEIEINPKDLRIDTYRSSGAGGQHV 252 (367)
T ss_pred CeeEEEEEEeccCHHHHHhhccceEEEEecCCCCCCCceecceeeEEecCCCCCccccccChhhEEEEEeeCCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999997666889999999999999999999999
Q ss_pred cccCceEEEEEcCCeeEEEEcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCceeeEEec-CCCcc
Q psy15210 161 NKTDSAVRITHIPTGIVVQCQNDRSQHRNKSEAWDMLKSKLYKLKLQYQIKEKKKLEDTKKDIKWGYQIRSYVL-DKSRI 239 (278)
Q Consensus 161 Nk~~saVrl~h~Ptgi~v~~~~~RSq~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~g~~iRtY~~-~~~rV 239 (278)
|||+|||||+|+||||+|+|+++|||++||+.|+++|+++|++.+.+++....+..|+.+.+++||++|||||| +++||
T Consensus 253 Nkt~saVrl~h~ptgi~v~~~~~RSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~r~~~~~~~rg~~IRtYn~~p~~rV 332 (367)
T PRK00578 253 NKTDSAVRITHIPTGIVVQCQNERSQHQNKASAMKMLKAKLYELELEKRAAEKDALKGEKKEIGWGSQIRSYVLHPYQMV 332 (367)
T ss_pred cceeeEEEEEECCCcEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCeEEEECCCCcee
Confidence 99999999999999999999999999999999999999999999999999888888888899999999999999 55889
Q ss_pred ccccccccccCcccccCCCcHHHHHHHHHhhhhc
Q psy15210 240 KDLRTNLETKNIKDILDGDLDNFIIASLKQHLLN 273 (278)
Q Consensus 240 kD~R~~~~~~~~~~vl~G~ld~~i~~~~~~~~~~ 273 (278)
||||||++++|++.||+|+||+||++++.+...+
T Consensus 333 tDhR~g~~~~~l~~vl~G~ld~~I~~l~~~~~~~ 366 (367)
T PRK00578 333 KDLRTGYETGNTQAVLDGDLDGFIEAYLRWRASQ 366 (367)
T ss_pred eeeccCceecCHHHhhCCChHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999998764
No 8
>TIGR00019 prfA peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift.
Probab=100.00 E-value=1.6e-85 Score=624.64 Aligned_cols=272 Identities=42% Similarity=0.665 Sum_probs=254.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHh----hcCCCCCCCCceEEEEEcCCChHHHHHHHHHHHHHHHHHHhhcCcEEEEeeecC
Q psy15210 1 MLKEIEDNTNKLNNKIKEIEFH----QFFNDPLDFNNCFIDIQSGAGGIEAQDWASMLLRQYLRYCERKGFIVEILEKSN 76 (278)
Q Consensus 1 m~~e~~~~~~~~~~~l~~~~~~----~ll~~~~d~~~~~leI~aG~Gg~Ea~~~~~~L~~mY~~~a~~~g~~~~~v~~~~ 76 (278)
|+++|.+++.+++..++.++.+ .|+++|+|.++|+|+|+||+||.||++||++|++||++||+++||++++++..+
T Consensus 76 ~~~~a~~e~~~l~~~~~~~e~~l~~~ll~~~~~D~~~~~leI~aG~GG~Ea~~~a~~Ll~mY~~~a~~~g~~~~vi~~~~ 155 (360)
T TIGR00019 76 MREMAKEELEELEEKIEELEEQLKVLLLPKDPNDEKNVILEIRAGTGGDEAAIFAGDLFRMYSRYAESKGWKVEILSANE 155 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCCeEEEEECCCCcHHHHHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 5678999999999999999854 466999999999999999999999999999999999999999999999999999
Q ss_pred CCcCceeEEEEEEeccchhcccccccceeeEeeeCCCCCCCCceeeeeEEEEecccCccccCcCCCCCeeEEEeeecCCC
Q psy15210 77 GEITGIKTVTLKIKGKYAYGFLKSESGIHRLVRKSPFDSSNNRHTSFSSLFVYPEINNLINININPADLRIDTYRASGAG 156 (278)
Q Consensus 77 ~~~~g~~sa~~~i~G~~ay~~lk~E~GvHr~~rvs~~~~~~kr~ts~a~V~v~P~~~~~~~~~i~~~dl~~~~~RssGpG 156 (278)
++.+|++||++.|+|++||++|++|.|||||||+|||++++|+|||||+|.|+|.+++ +++.|+++||+++++||||||
T Consensus 156 ~~~~g~ksa~l~i~G~~ay~~lk~E~GvHrv~Rvp~~~s~~R~hTsfa~V~v~P~~~~-~~~~i~~~dl~~~~~RssG~G 234 (360)
T TIGR00019 156 TELGGYKEVIAEIKGDGVYSRLKFESGVHRVQRVPVTESQGRIHTSAATVAVMPELEE-VEVDINPADLRIDTFRSSGAG 234 (360)
T ss_pred CCCCcceEEEEEEecccHHHHHhhcCeeEEEECCCCCCCCCCeecceeEEEEEcCCCc-cccccCcccEEEEEEECCCCC
Confidence 9989999999999999999999999999999999999999999999999999999864 678999999999999999999
Q ss_pred CccccccCceEEEEEcCCeeEEEEcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhccCCCCCCceeeEEecC
Q psy15210 157 GQHINKTDSAVRITHIPTGIVVQCQNDRSQHRNKSEAWDMLKSKLYKLKLQYQIKEK-KKLEDTKKDIKWGYQIRSYVLD 235 (278)
Q Consensus 157 GQ~VNk~~saVrl~h~Ptgi~v~~~~~RSq~~Nk~~A~~~L~~~L~~~~~~~~~~~~-~~~~~~~~~~~~g~~iRtY~~~ 235 (278)
|||||||+|||||+|+||||+|.|+++|||++||+.|+++|+++|++...+++.... ..+|..+....||++||||||+
T Consensus 235 GQ~VNkt~SaVrl~h~ptgi~V~~~~eRSQ~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~~~~~~Rs~~IRtY~~~ 314 (360)
T TIGR00019 235 GQHVNTTDSAVRITHLPTGIVVECQDERSQHKNKDKAMKVLRARLYEAEQEKQQAAQASTRKSQVGSGDRSERIRTYNFP 314 (360)
T ss_pred CCCcCceeeeEEEEECCCcEEEEECCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcceecccCCeEEEECC
Confidence 999999999999999999999999999999999999999999999999886554444 3445566777889999999999
Q ss_pred CCccccccccccccCcccccCCCcHHHHHHHHHhhhhc
Q psy15210 236 KSRIKDLRTNLETKNIKDILDGDLDNFIIASLKQHLLN 273 (278)
Q Consensus 236 ~~rVkD~R~~~~~~~~~~vl~G~ld~~i~~~~~~~~~~ 273 (278)
+++|||||||++++|+++||+|+||+||++++.+....
T Consensus 315 ~~rV~DhRtg~~~~~l~~vl~G~Ld~~I~~~l~~~~~~ 352 (360)
T TIGR00019 315 QNRVTDHRINLTLYKLDEVLEGDLDELIEALIAEDQAQ 352 (360)
T ss_pred CCeeeeeccCCeEcChHHHhCCchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999987544
No 9
>PRK00591 prfA peptide chain release factor 1; Validated
Probab=100.00 E-value=2.2e-84 Score=617.01 Aligned_cols=274 Identities=41% Similarity=0.672 Sum_probs=256.2
Q ss_pred ChhHHHHHHHHHHHHHHHHH--Hh--hcCCCCCCCCceEEEEEcCCChHHHHHHHHHHHHHHHHHHhhcCcEEEEeeecC
Q psy15210 1 MLKEIEDNTNKLNNKIKEIE--FH--QFFNDPLDFNNCFIDIQSGAGGIEAQDWASMLLRQYLRYCERKGFIVEILEKSN 76 (278)
Q Consensus 1 m~~e~~~~~~~~~~~l~~~~--~~--~ll~~~~d~~~~~leI~aG~Gg~Ea~~~~~~L~~mY~~~a~~~g~~~~~v~~~~ 76 (278)
|.+++++++..++..++.++ +. .|+++|+|.++|+|+|+||+||.||++||++|++||.+||+++||++++++..+
T Consensus 76 ~~~~~~~e~~~l~~~l~~~e~~l~~~ll~~~~~D~~~~~leI~aG~GG~Ea~~~a~~Ll~mY~~~a~~~g~~~~vi~~~~ 155 (359)
T PRK00591 76 MREMAKEELKELEERLEELEEELKILLLPKDPNDDKNVILEIRAGTGGDEAALFAGDLFRMYSRYAERQGWKVEILSASE 155 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCeEEEEECCCChHHHHHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 56788999999999999998 45 367999999999999999999999999999999999999999999999999999
Q ss_pred CCcCceeEEEEEEeccchhcccccccceeeEeeeCCCCCCCCceeeeeEEEEecccCccccCcCCCCCeeEEEeeecCCC
Q psy15210 77 GEITGIKTVTLKIKGKYAYGFLKSESGIHRLVRKSPFDSSNNRHTSFSSLFVYPEINNLINININPADLRIDTYRASGAG 156 (278)
Q Consensus 77 ~~~~g~~sa~~~i~G~~ay~~lk~E~GvHr~~rvs~~~~~~kr~ts~a~V~v~P~~~~~~~~~i~~~dl~~~~~RssGpG 156 (278)
++.+|++||++.|+|++||++|++|.|||||||+|||++++|+|||||+|+|+|.+++ +++.|+++||+++++||||||
T Consensus 156 ~~~~g~ksa~l~i~G~~ay~~Lk~E~GvHrv~R~p~~~s~~R~~tsfa~V~v~P~~~~-~~~~i~~~dl~~~~~RssG~G 234 (359)
T PRK00591 156 GELGGYKEVIAEISGDGVYSKLKFESGVHRVQRVPATESQGRIHTSAATVAVLPEAEE-VEVEINPKDLRIDTFRSSGAG 234 (359)
T ss_pred CCCCceeEEEEEEecccHHHHHhhcCeeEEEEeeCCCCCCCceecceEEEEEEcCCCc-cccccCcccEEEEEEECCCCC
Confidence 9989999999999999999999999999999999999999999999999999999865 589999999999999999999
Q ss_pred CccccccCceEEEEEcCCeeEEEEcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hccCCCCCCceeeEEecC
Q psy15210 157 GQHINKTDSAVRITHIPTGIVVQCQNDRSQHRNKSEAWDMLKSKLYKLKLQYQIKEKKKLE-DTKKDIKWGYQIRSYVLD 235 (278)
Q Consensus 157 GQ~VNk~~saVrl~h~Ptgi~v~~~~~RSq~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~~-~~~~~~~~g~~iRtY~~~ 235 (278)
|||||||+|||||+|+||||+|.|+++|||++||+.|+++|+++|++.+.+++....+..+ .......||++||||+|+
T Consensus 235 GQ~VNkt~saVrl~H~ptGi~v~~~~eRSQ~~Nk~~Al~~L~~~L~~~~~~~~~~~~~~~r~~~~~~~~Rse~IRtY~f~ 314 (359)
T PRK00591 235 GQHVNTTDSAVRITHLPTGIVVECQDERSQHKNKAKAMKVLRARLYDAERQKAQAEEAATRKSQVGSGDRSERIRTYNFP 314 (359)
T ss_pred CCCccceeeeEEEEECCCcEEEEECCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCeeeEECC
Confidence 9999999999999999999999999999999999999999999999999988887776443 445556677899999999
Q ss_pred CCccccccccccccCcccccCCCcHHHHHHHHHhhhhccc
Q psy15210 236 KSRIKDLRTNLETKNIKDILDGDLDNFIIASLKQHLLNKI 275 (278)
Q Consensus 236 ~~rVkD~R~~~~~~~~~~vl~G~ld~~i~~~~~~~~~~~~ 275 (278)
+++|||||||++++|+++||+|+||+||++++.+.....+
T Consensus 315 ~~~V~DhRtg~~~~~l~~vl~G~Ld~fI~~~l~~~~~~~l 354 (359)
T PRK00591 315 QGRVTDHRINLTLYKLDEVMEGDLDELIDALIAEDQAEKL 354 (359)
T ss_pred CCeeeeeccCCEEcChHHHhCCChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999876543
No 10
>KOG2726|consensus
Probab=100.00 E-value=1.6e-78 Score=574.45 Aligned_cols=271 Identities=42% Similarity=0.698 Sum_probs=251.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCceEEEEEcCCChHHHHHHHHHHHHHHHHHHhhcCcEEEEeeecCCCcCc
Q psy15210 2 LKEIEDNTNKLNNKIKEIEFHQFFNDPLDFNNCFIDIQSGAGGIEAQDWASMLLRQYLRYCERKGFIVEILEKSNGEITG 81 (278)
Q Consensus 2 ~~e~~~~~~~~~~~l~~~~~~~ll~~~~d~~~~~leI~aG~Gg~Ea~~~~~~L~~mY~~~a~~~g~~~~~v~~~~~~~~g 81 (278)
.+|+.+-..+++..+.++++..|+++|||..+|+|+|+||+||+||++|+.+|++||.+||+++||++++++..+++.+|
T Consensus 106 ~~E~~~~~~~i~~~~~~l~~~lLp~~~~D~~~~iiev~aGaGG~Ea~ift~el~~MY~~~a~~~~w~~~~l~~~~~~~~G 185 (386)
T KOG2726|consen 106 EEEAEEISKEIERSLHELELSLLPSDPYDAEACIIEVRAGAGGQEAQIFTMELVDMYQKYAERLGWKARVLEKAPGESGG 185 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcccccCeEEEEeCCCCcHHHHHHHHHHHHHHHHHHHhcccceeehhcCCccccc
Confidence 34555556666777778889999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEeccchhcccccccceeeEeeeCCCCCCCCceeeeeEEEEecccC-ccccCcCCCCCeeEEEeeecCCCCccc
Q psy15210 82 IKTVTLKIKGKYAYGFLKSESGIHRLVRKSPFDSSNNRHTSFSSLFVYPEIN-NLINININPADLRIDTYRASGAGGQHI 160 (278)
Q Consensus 82 ~~sa~~~i~G~~ay~~lk~E~GvHr~~rvs~~~~~~kr~ts~a~V~v~P~~~-~~~~~~i~~~dl~~~~~RssGpGGQ~V 160 (278)
|++|++.|+|++||++|++|.||||+||+|++++.||+||||++|.|+|.+. +++++.++++||+++++||||||||||
T Consensus 186 i~~At~~i~G~~ayg~l~~E~GvHRv~r~p~~e~~gr~htstasV~ViP~~~~~~~~~~~~~~dl~i~~~R~~G~GGQhv 265 (386)
T KOG2726|consen 186 IKSATLEIEGESAYGYLKFEAGVHRVQRVPSTETSGRRHTSTASVAVIPQPGRDEVDVEIDEKDLRIETFRASGPGGQHV 265 (386)
T ss_pred ceeeeeEecccchhheeeccCcccceeecCCcccccccccccceEEEeccCCCCccceecCchheeEEecccCCCCcccc
Confidence 9999999999999999999999999999999999999999999999999993 468999999999999999999999999
Q ss_pred cccCceEEEEEcCCeeEEEEcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hccCCCCCCceeeEEecCCCcc
Q psy15210 161 NKTDSAVRITHIPTGIVVQCQNDRSQHRNKSEAWDMLKSKLYKLKLQYQIKEKKKLE-DTKKDIKWGYQIRSYVLDKSRI 239 (278)
Q Consensus 161 Nk~~saVrl~h~Ptgi~v~~~~~RSq~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~~-~~~~~~~~g~~iRtY~~~~~rV 239 (278)
|||+|||||+|+||||+|+|+++|||++||+.|+.+|+++|+.....+.....++.+ .+.....|+++||||||+++||
T Consensus 266 NktdsaVrl~HiPTGIvv~cq~eRSq~~Nr~~A~~~L~akL~~~~~~~~~~~~~~~r~~qv~s~~rsekiRTy~~~q~rv 345 (386)
T KOG2726|consen 266 NKTDSAVRLTHIPTGIVVECQEERSQHKNRALALKRLRAKLAVIYREEKSEEEKKKRKAQVGSLKRSEKIRTYNFKQDRV 345 (386)
T ss_pred cccccceEEEeecCceEEEeecHHhHHhhHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHhhcccCchhceeecccCccch
Confidence 999999999999999999999999999999999999999999998887776664443 3445567999999999999999
Q ss_pred ccccccccccCcccccCCCcHHHHHHHHHhhhh
Q psy15210 240 KDLRTNLETKNIKDILDGDLDNFIIASLKQHLL 272 (278)
Q Consensus 240 kD~R~~~~~~~~~~vl~G~ld~~i~~~~~~~~~ 272 (278)
+|||++++.+++++||+|+||+||++++.++..
T Consensus 346 ~D~r~~~~~~d~~~~l~G~Ld~li~~~~~~~~~ 378 (386)
T KOG2726|consen 346 TDHRIGLESHDLESFLDGNLDELIEALLSLRRE 378 (386)
T ss_pred hhhhhcccccchHHHHhccHHHHHHHHHHHhhH
Confidence 999999999999999999999999999988654
No 11
>COG1186 PrfB Protein chain release factor B [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.9e-75 Score=523.04 Aligned_cols=237 Identities=62% Similarity=0.959 Sum_probs=231.0
Q ss_pred eEEEEEcCCChHHHHHHHHHHHHHHHHHHhhcCcEEEEeeecCCCcCceeEEEEEEeccchhcccccccceeeEeeeCCC
Q psy15210 34 CFIDIQSGAGGIEAQDWASMLLRQYLRYCERKGFIVEILEKSNGEITGIKTVTLKIKGKYAYGFLKSESGIHRLVRKSPF 113 (278)
Q Consensus 34 ~~leI~aG~Gg~Ea~~~~~~L~~mY~~~a~~~g~~~~~v~~~~~~~~g~~sa~~~i~G~~ay~~lk~E~GvHr~~rvs~~ 113 (278)
|+|+|+||+||+|||+||.+|++||++||+++||++++++..+|+.+|+|||+|.|+|++||++|+.|.|||||+|+|||
T Consensus 1 ~~l~i~~g~gg~e~~dw~~~l~rmy~r~a~~~g~~~e~l~~~~g~~~g~ks~~~~~~g~~a~g~~~~e~g~hrlvr~Spf 80 (239)
T COG1186 1 AYLTIHAGAGGTEAQDWASMLLRMYTRWAERKGFKVEVLDTSDGEEAGIKSATLKIKGENAYGYLKTETGVHRLVRISPF 80 (239)
T ss_pred CEEEEeCCCCchHHHHHHHHHHHHHHHHHHHcCCeEEEEeccCCcccccceEEEEEechHHHHHHHhhcceeEEEeecCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeeeeEEEEecccCccccCcCCCCCeeEEEeeecCCCCccccccCceEEEEEcCCeeEEEEcCcCCHHHHHHHH
Q psy15210 114 DSSNNRHTSFSSLFVYPEINNLINININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVQCQNDRSQHRNKSEA 193 (278)
Q Consensus 114 ~~~~kr~ts~a~V~v~P~~~~~~~~~i~~~dl~~~~~RssGpGGQ~VNk~~saVrl~h~Ptgi~v~~~~~RSq~~Nk~~A 193 (278)
++.++|||||++|.++|.++.++++.|+++||+++|+|||||||||||||+|||||||+||||+|.|+.+|||++|++.|
T Consensus 81 ~~~~~R~tsf~~v~v~p~~~~~i~i~I~~~dl~idt~RASGaGGQhVNKt~SAVrlth~ptgivv~cq~eRSq~~n~~~a 160 (239)
T COG1186 81 DSNGRRHTSFASVEVFPELDISIEIEIPDDDLRIDTYRASGAGGQHVNKTDSAVRLTHLPTGIVVLCQNERSQHLNKALA 160 (239)
T ss_pred CcCcccccceeeeeecCCCCcccceecCccceEEEEEEcCCCCCCccccccccEEEEEcCCCCEecCHHHHHHHHHHHHH
Confidence 99999999999999999998778999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCceeeEEecCCCc-cccccccccccCcccccCCCcHHHHHHHHHhh
Q psy15210 194 WDMLKSKLYKLKLQYQIKEKKKLEDTKKDIKWGYQIRSYVLDKSR-IKDLRTNLETKNIKDILDGDLDNFIIASLKQH 270 (278)
Q Consensus 194 ~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~g~~iRtY~~~~~r-VkD~R~~~~~~~~~~vl~G~ld~~i~~~~~~~ 270 (278)
+..|+.+|+..+++.+.++....+..+..++||+++|.|.+++++ +||+|++++..+.+.||+|++|.||++++.++
T Consensus 161 ~~~l~~kL~~~~~~~Rsqe~n~~~a~~k~i~wg~qirsyv~~p~~~vKd~Rt~~E~~~~~~v~dg~~~~~~~~~l~~~ 238 (239)
T COG1186 161 RKMLKGKLYILAQEKRSQEKNRERALKKLIGWGNQIRSYVLDPYQPTKDLRTGVERRNKSKVLDGDKDGFIKAYLKWD 238 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccccCCCccccccccccceeeccHHHhhhhhHHHHHHhhhhcc
Confidence 999999999999999988888888889999999999999999876 99999999999999999999999999999875
No 12
>TIGR03072 release_prfH putative peptide chain release factor H. Members of this protein family are bacterial proteins homologous to peptide chain release factors 1 (RF-1, product of the prfA gene), and 2 (RF-2, product of the prfB gene). The member from Escherichia coli K-12, designated prfH, appears to be a pseudogene. This class I release factor is always found as the downstream gene of a two-gene operon.
Probab=100.00 E-value=1.2e-66 Score=460.93 Aligned_cols=198 Identities=27% Similarity=0.422 Sum_probs=189.6
Q ss_pred eEEEEEcCCChHHHHHHHHHHHHHHHHHHhhcCcEEEEeeecCCCcC-ceeEEEEEEeccchhcccccccceeeEeeeCC
Q psy15210 34 CFIDIQSGAGGIEAQDWASMLLRQYLRYCERKGFIVEILEKSNGEIT-GIKTVTLKIKGKYAYGFLKSESGIHRLVRKSP 112 (278)
Q Consensus 34 ~~leI~aG~Gg~Ea~~~~~~L~~mY~~~a~~~g~~~~~v~~~~~~~~-g~~sa~~~i~G~~ay~~lk~E~GvHr~~rvs~ 112 (278)
++|||+||+||+||++||++||+||.+||+++||++++++..+++.+ |++||+|.|+|++||++|+.|.|+|+|++.||
T Consensus 1 ~~leI~aG~GG~Ea~lfa~~L~~my~~~a~~~g~~~eii~~~~~~~~gg~ksa~~~i~G~~ay~~l~~~~G~h~~v~~sp 80 (200)
T TIGR03072 1 ILLQLSSAQGPAECCLAVAKALERLTREAAARGVRVEVLEQEPGEVPGTLRSALVSLDGEAAAALADRWEGTLLWICPSP 80 (200)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCceEEEEEEEEccCHHHHhhcccceEEEEEcCC
Confidence 48999999999999999999999999999999999999999998874 69999999999999999999999999999999
Q ss_pred CCCCCCceeeeeEEEEecccCccccCcCCCCCeeEEEeeecCCCCccccccCceEEEEEcCCeeEEEEcCcCCHHHHHHH
Q psy15210 113 FDSSNNRHTSFSSLFVYPEINNLINININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVQCQNDRSQHRNKSE 192 (278)
Q Consensus 113 ~~~~~kr~ts~a~V~v~P~~~~~~~~~i~~~dl~~~~~RssGpGGQ~VNk~~saVrl~h~Ptgi~v~~~~~RSq~~Nk~~ 192 (278)
++++++|||||++|.|+|. +++|+++||+++++|||||||||||||+|+|||+|+||||+|+|+++|||++||+.
T Consensus 81 ~r~~~~R~ts~~~V~v~~~-----~~~i~~~dl~~~~~RssGpGGQ~vNkt~saVrl~h~ptgi~v~~~~~RSQ~~Nk~~ 155 (200)
T TIGR03072 81 YRPHHRRKNWFIGVQRFSA-----SEEATEDEIRFETLRSSGPGGQHVNKTESAVRATHLASGISVKVQSERSQHANKRL 155 (200)
T ss_pred CCCCCCeeEEEEEEEEecC-----ccccChhheEEEEEECCCCCcccccccceeEEEEECCCcEEEEECCccCHHHHHHH
Confidence 9999999999999999984 45789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCceeeEEecCC
Q psy15210 193 AWDMLKSKLYKLKLQYQIKEKKKLEDTKKDIKWGYQIRSYVLDK 236 (278)
Q Consensus 193 A~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~g~~iRtY~~~~ 236 (278)
|+++|+++|++.+.++.+...+.+|..+.+.+||+|||||+++.
T Consensus 156 A~~~L~~~l~~~~~~~~~~~~~~~r~~~~~~~Rg~~iRty~~~~ 199 (200)
T TIGR03072 156 ATLLLAVRLADLQQEQAAALRAERRTAHHQIERGNPVRVFKGEL 199 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCceEeeeCCc
Confidence 99999999999999888888888889999999999999999864
No 13
>PRK08179 prfH peptide chain release factor-like protein; Reviewed
Probab=100.00 E-value=4.7e-66 Score=457.13 Aligned_cols=196 Identities=28% Similarity=0.409 Sum_probs=188.6
Q ss_pred eEEEEEcCCChHHHHHHHHHHHHHHHHHHhhcCcEEEEeeecCCCc-CceeEEEEEEeccchhcccccccceeeEeeeCC
Q psy15210 34 CFIDIQSGAGGIEAQDWASMLLRQYLRYCERKGFIVEILEKSNGEI-TGIKTVTLKIKGKYAYGFLKSESGIHRLVRKSP 112 (278)
Q Consensus 34 ~~leI~aG~Gg~Ea~~~~~~L~~mY~~~a~~~g~~~~~v~~~~~~~-~g~~sa~~~i~G~~ay~~lk~E~GvHr~~rvs~ 112 (278)
++|||+||+||+||++||++||+||.+||+++||++++++..+++. +|++||+|.|+|++||++|+.|.|+|+|++.||
T Consensus 2 ~~leI~aG~Gg~Ea~~fa~~L~~my~~~a~~~g~~~~ii~~~~~~~~gg~ksa~~~i~G~~a~~~l~~~~G~~~~V~~sp 81 (200)
T PRK08179 2 ILLQLSSAQGPAECCLAVAKALERLLKEAARQGVRVTVLETETGRYPDTLRSALVSLDGDNAEALAESWCGTIQWICPSP 81 (200)
T ss_pred EEEEEeCCCChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCceEEEEEEEEccCHHHHhhcccCeeEEEecCC
Confidence 6899999999999999999999999999999999999999999987 459999999999999999999999999999999
Q ss_pred CCCCCCceeeeeEEEEecccCccccCcCCCCCeeEEEeeecCCCCccccccCceEEEEEcCCeeEEEEcCcCCHHHHHHH
Q psy15210 113 FDSSNNRHTSFSSLFVYPEINNLINININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVQCQNDRSQHRNKSE 192 (278)
Q Consensus 113 ~~~~~kr~ts~a~V~v~P~~~~~~~~~i~~~dl~~~~~RssGpGGQ~VNk~~saVrl~h~Ptgi~v~~~~~RSq~~Nk~~ 192 (278)
++++++|||||++|.|+|. ++.|+++||+++|+|||||||||||||+|||||+|+||||+|+|+++|||++||+.
T Consensus 82 ~~~~~~R~~s~~~V~v~~~-----~~~i~~~dl~~~~~RssGpGGQ~VNkt~saVrl~h~ptgi~v~~~~~RSQ~~Nk~~ 156 (200)
T PRK08179 82 YRPHHGRKNWFVGIGRFSA-----DEEEQSDEIRFETLRSSGPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRL 156 (200)
T ss_pred CCCCCCceEEEEEEEEeCC-----cCccCHHHeEEEEEEccCCcccccccccceEEEEEcCCcEEEEECCCCCHHHHHHH
Confidence 9999999999999999976 35889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCceeeEEec
Q psy15210 193 AWDMLKSKLYKLKLQYQIKEKKKLEDTKKDIKWGYQIRSYVL 234 (278)
Q Consensus 193 A~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~g~~iRtY~~ 234 (278)
|+++|+++|++.+.++.....+.+|..+.+.+||+|||||..
T Consensus 157 A~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~Rg~~IRt~~~ 198 (200)
T PRK08179 157 ARLLIAWKLEQQQQEQSAALKSQRRMFHHQIERGNPRRVFTG 198 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCceEeeec
Confidence 999999999999998888888888999999999999999974
No 14
>PF00472 RF-1: RF-1 domain; InterPro: IPR000352 Peptide chain release factors (RFs) are required for the termination of protein biosynthesis []. At present two classes of RFs can be distinguished. Class I RFs bind to ribosomes that have encountered a stop codon at their decoding site and induce release of the nascent polypeptide. Class II RFs are GTP-binding proteins that interact with class I RFs and enhance class I RF activity. In prokaryotes there are two class I RFs that act in a codon specific manner []: RF-1 (gene prfA) mediates UAA and UAG-dependent termination while RF-2 (gene prfB) mediates UAA and UGA-dependent termination. RF-1 and RF-2 are structurally and evolutionary related proteins which have been shown to be part of a larger family [].; GO: 0003747 translation release factor activity, 0006415 translational termination; PDB: 2JY9_A 1ZBT_A 1GQE_A 3F1G_X 3F1E_X 1RQ0_C 4DH9_Y 2JVA_A 1J26_A 3D5A_X ....
Probab=100.00 E-value=2.5e-35 Score=240.17 Aligned_cols=109 Identities=40% Similarity=0.661 Sum_probs=98.0
Q ss_pred cccCcCCCCCeeEEEeeecCCCCccccccCceEEEEEcCCeeEEEEcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15210 135 LINININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVQCQNDRSQHRNKSEAWDMLKSKLYKLKLQYQIKEKK 214 (278)
Q Consensus 135 ~~~~~i~~~dl~~~~~RssGpGGQ~VNk~~saVrl~h~Ptgi~v~~~~~RSq~~Nk~~A~~~L~~~L~~~~~~~~~~~~~ 214 (278)
..++.|+++||+++|+|||||||||||||+|+|+|+|+||||+|+|+++|||++|++.|+++|+++|.++..++......
T Consensus 4 ~~~~~i~~~dl~~~~~RssGpGGQ~VNk~~s~V~l~h~ptgi~v~~~~~Rsq~~Nr~~A~~~L~~~l~~~~~~~~~~~~~ 83 (113)
T PF00472_consen 4 EKEIDIPEKDLEISFSRSSGPGGQNVNKTNSKVRLRHIPTGIVVKCQESRSQHQNREDALEKLREKLDEAYREKRREKTR 83 (113)
T ss_dssp SSSSCC-GGGEEEEEEESSSSSSCHHHSSSEEEEEEETTTTEEEEEESSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccCHHHeEEEEEecCCCCCCcccccCCEEEEEEecccEEEEEcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999998666666655
Q ss_pred hhhhccCC-CCCCceeeEEecCCCcccccc
Q psy15210 215 KLEDTKKD-IKWGYQIRSYVLDKSRIKDLR 243 (278)
Q Consensus 215 ~~~~~~~~-~~~g~~iRtY~~~~~rVkD~R 243 (278)
..+..+.. ..++++||+|++++++|||||
T Consensus 84 ~~~~~~~~~~~~~~~iR~y~~~~~~vk~~R 113 (113)
T PF00472_consen 84 EIRKSQVKRLERKKKIRTYNFPRSRVKDHR 113 (113)
T ss_dssp TTTTTSCCCSSTTSEEEEEETTTTEEEETT
T ss_pred HHHHHHHhHHhhhcceecccCChhhcccCC
Confidence 55555444 789999999999999999998
No 15
>PF03462 PCRF: PCRF domain; InterPro: IPR005139 This domain is found in peptide chain release factors. Peptide chain release factors are important for protein synthesis since they direct the termination of translation in response to the peptide chain termination codons UAG and UAA. These are structurally distinct but both contain the PCRF domain [].; GO: 0016149 translation release factor activity, codon specific, 0006415 translational termination, 0005737 cytoplasm; PDB: 3D5A_X 3D5C_X 3MR8_V 3MS0_V 3F1G_X 3F1E_X 1ZBT_A 2IHR_1 2X9R_Y 2X9T_Y ....
Probab=99.95 E-value=2.4e-28 Score=199.61 Aligned_cols=101 Identities=45% Similarity=0.705 Sum_probs=93.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHh----hcCCCCCCCCceEEEEEcCCChHHHHHHHHHHHHHHHHHHhhcCcEEEEeeecC
Q psy15210 1 MLKEIEDNTNKLNNKIKEIEFH----QFFNDPLDFNNCFIDIQSGAGGIEAQDWASMLLRQYLRYCERKGFIVEILEKSN 76 (278)
Q Consensus 1 m~~e~~~~~~~~~~~l~~~~~~----~ll~~~~d~~~~~leI~aG~Gg~Ea~~~~~~L~~mY~~~a~~~g~~~~~v~~~~ 76 (278)
|++++.+++..+.++|+.++.+ .|+++|+|.++|+|+|+||+||+||++||.+|++||++||+++||++++++..+
T Consensus 11 ~~~~~~~e~~~~~~~l~~l~~~l~~~ll~~~~~d~~~~ileI~aG~GG~EA~lfa~~L~~MY~~~a~~~gw~~~~l~~~~ 90 (115)
T PF03462_consen 11 MRELAEEEIEQLEEELEELEKELLDSLLPSDPYDANNAILEIRAGAGGDEACLFAEELFRMYQRYAERRGWKVEVLDYSP 90 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHSSTTTSEEEEEEEE-SSTHHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCeEEEEecCCCchHHHHHHHHHHHHHHHHHHHcCCEEEEEecCC
Confidence 5789999999999999999866 566899999999999999999999999999999999999999999999999999
Q ss_pred CCcCceeEEEEEEeccchhcccccc
Q psy15210 77 GEITGIKTVTLKIKGKYAYGFLKSE 101 (278)
Q Consensus 77 ~~~~g~~sa~~~i~G~~ay~~lk~E 101 (278)
++.+|+++|++.|+|++||++|++|
T Consensus 91 ~~~~G~k~a~~~I~G~~aY~~Lk~E 115 (115)
T PF03462_consen 91 GEEGGIKSATLEISGEGAYGYLKFE 115 (115)
T ss_dssp -SSSSEEEEEEEEESTTHHHHHGGG
T ss_pred CCccceeEEEEEEEcCChHHhccCC
Confidence 9999999999999999999999987
No 16
>PRK09256 hypothetical protein; Provisional
Probab=99.89 E-value=4.5e-24 Score=179.72 Aligned_cols=102 Identities=30% Similarity=0.417 Sum_probs=84.4
Q ss_pred cCcCCCCCeeEEEeeecCCCCccccccCceEEEEE------cC-----------------Ce-eEEEEcCcCCHHHHHHH
Q psy15210 137 NININPADLRIDTYRASGAGGQHINKTDSAVRITH------IP-----------------TG-IVVQCQNDRSQHRNKSE 192 (278)
Q Consensus 137 ~~~i~~~dl~~~~~RssGpGGQ~VNk~~saVrl~h------~P-----------------tg-i~v~~~~~RSq~~Nk~~ 192 (278)
++.|+++|+++.|+|||||||||||||+|+|+|+| +| +| |+|+|+++|||++|+++
T Consensus 7 ~~~i~~~~l~~~~~RSSGPGGQ~VNKt~SkV~l~~~~~~~~lp~~~~~~l~~~~~~r~~~~g~l~i~~~~~RSQ~~Nr~~ 86 (138)
T PRK09256 7 RLVIPENELEWRFIRASGPGGQNVNKVSTAVELRFDIAASSLPEFYKERLLALAGHRITKDGVIVIKAQEFRSQERNRED 86 (138)
T ss_pred cCccCHHHeEEEEEEcCCCCcccccccceeeEEEechhhccCCHHHHHHHHHHhcCcccCCCcEEEEECCcCCHHHHHHH
Confidence 57899999999999999999999999999999996 77 35 99999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCceeeEEecCC--Ccccccccc
Q psy15210 193 AWDMLKSKLYKLKLQYQIKEKKKLEDTKKDIKWGYQIRSYVLDK--SRIKDLRTN 245 (278)
Q Consensus 193 A~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~g~~iRtY~~~~--~rVkD~R~~ 245 (278)
|+++|.++|.++.... ..+..+++..+.+.|+...+. +.+|..|..
T Consensus 87 al~kL~~~i~~~~~~p-------~~r~~tk~~~~~~~rRl~~Kk~~S~~K~~R~~ 134 (138)
T PRK09256 87 ALERLVALIREALKPP-------KKRRATKPTRGSKERRLESKKQRGEVKALRGK 134 (138)
T ss_pred HHHHHHHHHHHHhhcc-------ccccCCcccHHHHHHHHHHHHHHhHHHHhhCC
Confidence 9999999998876531 234567777777777766654 347776654
No 17
>KOG3429|consensus
Probab=99.67 E-value=7e-17 Score=138.18 Aligned_cols=73 Identities=29% Similarity=0.470 Sum_probs=64.9
Q ss_pred cccCcCCCCCeeEEEeeecCCCCccccccCceEEEEE-------cC------------------CeeEEEEcCcCCHHHH
Q psy15210 135 LINININPADLRIDTYRASGAGGQHINKTDSAVRITH-------IP------------------TGIVVQCQNDRSQHRN 189 (278)
Q Consensus 135 ~~~~~i~~~dl~~~~~RssGpGGQ~VNk~~saVrl~h-------~P------------------tgi~v~~~~~RSq~~N 189 (278)
.++-.||-+.+.+.|+||||||||||||++|+|.|++ || ..|+|.++.+|||+.|
T Consensus 32 ~~~g~ipld~~~i~y~RSSGPGGQNVNKvNTKv~vrf~vs~a~Wipe~~R~~~~~~~~~rink~gelvI~Sd~TRsq~~N 111 (172)
T KOG3429|consen 32 HFKGKIPLDQLEISYSRSSGPGGQNVNKVNTKVEVRFKVSNAEWIPEFLRNKLLTTEKNRINKDGELVIYSDKTRSQHKN 111 (172)
T ss_pred ccCCCCchhheEEEEeecCCCCCcccccccceEEEEEecchhhhccHHHHHHHHHHHHHhhccCccEEEecchhHHhhcc
Confidence 3456788899999999999999999999999999994 55 2499999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy15210 190 KSEAWDMLKSKLYKLKLQ 207 (278)
Q Consensus 190 k~~A~~~L~~~L~~~~~~ 207 (278)
.++||++|++.|.+.+..
T Consensus 112 iaDcleKlr~~I~~~~~~ 129 (172)
T KOG3429|consen 112 IADCLEKLRDIIRAAEQT 129 (172)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 999999999999887653
No 18
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=60.00 E-value=27 Score=25.23 Aligned_cols=38 Identities=29% Similarity=0.463 Sum_probs=29.2
Q ss_pred HHHHHHHHhhcCcEEEEeeecCCCcCceeEEEEEEecc
Q psy15210 55 LRQYLRYCERKGFIVEILEKSNGEITGIKTVTLKIKGK 92 (278)
Q Consensus 55 ~~mY~~~a~~~g~~~~~v~~~~~~~~g~~sa~~~i~G~ 92 (278)
+......+.++||+++-+...+.+..|+..+++.++|+
T Consensus 6 L~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~ 43 (63)
T PF13710_consen 6 LNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGD 43 (63)
T ss_dssp HHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-
T ss_pred HHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeC
Confidence 44455566799999999998887788999999999993
No 19
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=57.44 E-value=29 Score=26.44 Aligned_cols=42 Identities=17% Similarity=0.255 Sum_probs=32.8
Q ss_pred HHHHHHHHhhcCcEEEEeeecCCCcCceeEEEEEEeccchhc
Q psy15210 55 LRQYLRYCERKGFIVEILEKSNGEITGIKTVTLKIKGKYAYG 96 (278)
Q Consensus 55 ~~mY~~~a~~~g~~~~~v~~~~~~~~g~~sa~~~i~G~~ay~ 96 (278)
+......+.++||+++.+...+.+..++.++++.+.++.+..
T Consensus 17 L~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~~~~~i~ 58 (76)
T PRK11152 17 LERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVASERPID 58 (76)
T ss_pred HHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEECCCchHH
Confidence 444556667999999999998877788999999997665443
No 20
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=55.44 E-value=36 Score=25.96 Aligned_cols=39 Identities=15% Similarity=0.288 Sum_probs=31.8
Q ss_pred HHHHHHHHhhcCcEEEEeeecCCCcCceeEEEEEEeccc
Q psy15210 55 LRQYLRYCERKGFIVEILEKSNGEITGIKTVTLKIKGKY 93 (278)
Q Consensus 55 ~~mY~~~a~~~g~~~~~v~~~~~~~~g~~sa~~~i~G~~ 93 (278)
+......+.++||+++.+...+.+..|+...++.+.|..
T Consensus 16 L~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~ 54 (76)
T PRK06737 16 LLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTE 54 (76)
T ss_pred HHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCH
Confidence 445556667999999999988888889999999988753
No 21
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=47.06 E-value=50 Score=25.85 Aligned_cols=38 Identities=13% Similarity=0.253 Sum_probs=31.1
Q ss_pred HHHHHHHhhcCcEEEEeeecCCCcCceeEEEEEEe-ccc
Q psy15210 56 RQYLRYCERKGFIVEILEKSNGEITGIKTVTLKIK-GKY 93 (278)
Q Consensus 56 ~mY~~~a~~~g~~~~~v~~~~~~~~g~~sa~~~i~-G~~ 93 (278)
......+.++||+++.+...+.+..|+.+.++.+. |+.
T Consensus 17 ~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~ 55 (84)
T PRK13562 17 NRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDD 55 (84)
T ss_pred HHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCH
Confidence 33445556899999999999988899999999997 754
No 22
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=40.11 E-value=2e+02 Score=23.18 Aligned_cols=59 Identities=24% Similarity=0.378 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhhcCcEEEEeeecCCCc-Ccee--EEEEEEeccc--hhcccccccceeeEee
Q psy15210 51 ASMLLRQYLRYCERKGFIVEILEKSNGEI-TGIK--TVTLKIKGKY--AYGFLKSESGIHRLVR 109 (278)
Q Consensus 51 ~~~L~~mY~~~a~~~g~~~~~v~~~~~~~-~g~~--sa~~~i~G~~--ay~~lk~E~GvHr~~r 109 (278)
...++.-...+|...|..+..+...+... .++. .+.+.+.|.+ ...|+......-|++.
T Consensus 52 ~~~ll~~l~~~A~~~gv~l~~~~p~~~~~~~~~~~~pv~i~l~G~Y~~l~~Fl~~l~~l~riv~ 115 (144)
T PF04350_consen 52 IPSLLEDLNRLAKKSGVKLTSFEPGEEEKKEFYIEIPVTISLEGSYHQLLNFLNDLENLPRIVN 115 (144)
T ss_dssp HHHHHHHHHHHHHHTT-EEEEEEE---EE-SSEEEEEEEEEEEEEHHHHHHHHHHHHTSSS-EE
T ss_pred HHHHHHHHHHHHHHCCCeEEEeecCcccccCceEEEEEEEEEEeeHHHHHHHHHHHHcCCCeEE
Confidence 34567777889999999988887654332 3454 4677777854 3456655555444443
No 23
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=33.96 E-value=81 Score=25.28 Aligned_cols=39 Identities=13% Similarity=-0.002 Sum_probs=30.6
Q ss_pred HHHHHHhhcCcEEEEeeecCCCcCceeEEEEEEeccchh
Q psy15210 57 QYLRYCERKGFIVEILEKSNGEITGIKTVTLKIKGKYAY 95 (278)
Q Consensus 57 mY~~~a~~~g~~~~~v~~~~~~~~g~~sa~~~i~G~~ay 95 (278)
.-...+.++||+++.+...+.+..|+...++.+.++...
T Consensus 24 RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~~~~~i 62 (96)
T PRK08178 24 HVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVNDDQRL 62 (96)
T ss_pred HHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEcCchHH
Confidence 344445689999999998888888999999998875543
No 24
>PF10213 MRP-S28: Mitochondrial ribosomal subunit protein ; InterPro: IPR019349 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a conserved region of approx. 125 residues of one of the proteins that makes up the small subunit of the mitochondrial ribosome. In Saccharomyces cerevisiae (Baker's yeast) it is mitochondrial ribosomal protein S24 whereas in humans it is S35.
Probab=33.69 E-value=2.8e+02 Score=23.08 Aligned_cols=33 Identities=18% Similarity=0.160 Sum_probs=29.3
Q ss_pred Ce-eEEEEcCcCCHHHHHHHHHHHHHHHHHHHHH
Q psy15210 174 TG-IVVQCQNDRSQHRNKSEAWDMLKSKLYKLKL 206 (278)
Q Consensus 174 tg-i~v~~~~~RSq~~Nk~~A~~~L~~~L~~~~~ 206 (278)
+| +.+.|+..-++.+|+.-|...|...+.++..
T Consensus 60 ~d~l~i~sdr~~~~~qN~~~l~~~l~~L~~EA~~ 93 (127)
T PF10213_consen 60 TDILKISSDRFPTRAQNKKYLSDLLTRLIHEAKD 93 (127)
T ss_pred CCEEEEecccCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 55 7899999999999999999999999987754
No 25
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=33.34 E-value=1.1e+02 Score=25.72 Aligned_cols=45 Identities=22% Similarity=0.292 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCc-EEEEeeecCCCcCceeEEEEEE
Q psy15210 45 IEAQDWASMLLRQYLRYCERKGF-IVEILEKSNGEITGIKTVTLKI 89 (278)
Q Consensus 45 ~Ea~~~~~~L~~mY~~~a~~~g~-~~~~v~~~~~~~~g~~sa~~~i 89 (278)
.++..+...+++.|..+....|+ .+.++....++.+++.+....+
T Consensus 121 ~~~~~~~~~~~~~~~~i~~~lgl~~~~~~~~~~~~~~~~~~~~~d~ 166 (173)
T PF00587_consen 121 EQSEEEFEELLELYKEILEKLGLEPYRIVLSSSGELGAYAKYEFDI 166 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSGCEEEEEEETCTSCTTSSEEEEE
T ss_pred cccHHHHHHHHHHHHHHHHHcCCceEEEEEcCCCccCCCHHHcccH
Confidence 78999999999999999999999 9999998887766654444333
No 26
>KOG3409|consensus
Probab=30.93 E-value=85 Score=28.04 Aligned_cols=62 Identities=19% Similarity=0.114 Sum_probs=44.3
Q ss_pred ccccceeeEeeeCCCCCC-CCceeeeeE-----EEEec-ccCccccCcCCCCCeeEEEeeecCCCCccc
Q psy15210 99 KSESGIHRLVRKSPFDSS-NNRHTSFSS-----LFVYP-EINNLINININPADLRIDTYRASGAGGQHI 160 (278)
Q Consensus 99 k~E~GvHr~~rvs~~~~~-~kr~ts~a~-----V~v~P-~~~~~~~~~i~~~dl~~~~~RssGpGGQ~V 160 (278)
+.-.|++|.+-+-++++. -+...||.- -.|+. ....+.-+...++||=+-+.|||+.|+|-+
T Consensus 98 ~~FrglirkqdvR~tEkdrv~v~ksFrPgDiVlAkVis~~~~~~y~LTtAeneLGVV~a~as~~g~~M~ 166 (193)
T KOG3409|consen 98 KSFRGLIRKQDVRATEKDRVKVYKSFRPGDIVLAKVISLGDGSNYLLTTAENELGVVFARASETGEPMV 166 (193)
T ss_pred hhhcceeehhhccccccchhhhhhccCCCcEEEEEEeecCCCCcEEEEEecccceEEEEeccccCCcee
Confidence 456899999999899874 367777742 12333 112234467789999999999999999765
No 27
>KOG1697|consensus
Probab=30.15 E-value=41 Score=31.61 Aligned_cols=18 Identities=17% Similarity=0.220 Sum_probs=15.0
Q ss_pred CCCceeeeeEEEEecccC
Q psy15210 116 SNNRHTSFSSLFVYPEIN 133 (278)
Q Consensus 116 ~~kr~ts~a~V~v~P~~~ 133 (278)
.|+|+++.|.|.|.|-..
T Consensus 154 ~g~rK~a~A~V~v~~GtG 171 (275)
T KOG1697|consen 154 VGRRKCARATVKVQPGTG 171 (275)
T ss_pred ccceecceeEEEEecCce
Confidence 588999999999977653
No 28
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=28.02 E-value=36 Score=26.08 Aligned_cols=60 Identities=28% Similarity=0.319 Sum_probs=36.6
Q ss_pred ceEEEEEcCCChHHHHH-HHHHHHHHHHHHHhhcCcEEEEeeecCCCcCceeEEEEEEeccchhcccccc
Q psy15210 33 NCFIDIQSGAGGIEAQD-WASMLLRQYLRYCERKGFIVEILEKSNGEITGIKTVTLKIKGKYAYGFLKSE 101 (278)
Q Consensus 33 ~~~leI~aG~Gg~Ea~~-~~~~L~~mY~~~a~~~g~~~~~v~~~~~~~~g~~sa~~~i~G~~ay~~lk~E 101 (278)
.+...|.+-..|+=|+. ++..+|+++ |++++..-. .|+....-.+.++++|+ +...|..|
T Consensus 17 ~~~a~i~are~gV~aG~~~~~~i~~~l-------~~~v~~~~~-dG~~v~~g~~i~~i~G~-a~~ll~~E 77 (88)
T PF02749_consen 17 TGTATIIAREDGVLAGLEEAEEIFEKL-------GLEVEWLVK-DGDRVEPGDVILEIEGP-ARALLTAE 77 (88)
T ss_dssp EEEEEEEESSSEEE-SHHHHHHHHHHC-------TEEEEESS--TT-EEETTCEEEEEEEE-HHHHHHHH
T ss_pred EEEEEEEeCCCEEEECHHHHHHHHhhc-------cEEEEEEeC-CCCCccCCcEEEEEEeC-HHHHHHHH
Confidence 55677777766666654 777777665 788875533 33332223689999997 45555554
No 29
>PF02815 MIR: MIR domain; InterPro: IPR003608 The MIR domain is named after three of the proteins in which it occurs: protein Mannosyltransferase (2.4.1.109 from EC), Inositol 1,4,5-trisphosphate receptor (IP3R) and Ryanodine receptor (RyR). MIR domains have also been found in eukaryotic stromal cell-derived factor 2 (SDF-2) and in Chlamydia trachomatis protein CT153. The MIR domain may have a ligand transferase function. This domain has a closed beta-barrel structure with a hairpin triplet, and has an internal pseudo-threefold symmetry. The MIR motifs that make up the MIR domain consist of ~50 residues and are often found in multiple copies. Inositol 1,4,5-trisphosphate (InsP3) is an intracellular second messenger that transduces growth factor and neurotransmitter signals. InsP3 mediates the release of Ca2+ from intracellular stores by binding to specific Ca2+ channel-coupled receptors. Ryanodine receptors are involved in communication between transverse-tubules and the sarcoplamic reticulum of cardiac and skeletal muscle. The proteins function as a Ca2+-release channels following depolarisation of transverse-tubules []. The function is modulated by Ca2+, Mg2+, ATP and calmodulin. Deficiency in the ryanodine receptor may be the cause of malignant hyperthermia (MH) and of central core disease of muscle (CCD) []. protein O-mannosyltransferases transfer mannose from DOL-P-mannose to ser or thr residues on proteins.; GO: 0016020 membrane; PDB: 1T9F_A 3UJ4_B 3UJ0_B 3T8S_B 3MAL_B 2XOA_A 1N4K_A.
Probab=27.80 E-value=1e+02 Score=26.60 Aligned_cols=37 Identities=24% Similarity=0.476 Sum_probs=29.6
Q ss_pred EEeeecCCCCccccccCceEEEEEcCCeeEEEEcCcC
Q psy15210 148 DTYRASGAGGQHINKTDSAVRITHIPTGIVVQCQNDR 184 (278)
Q Consensus 148 ~~~RssGpGGQ~VNk~~saVrl~h~Ptgi~v~~~~~R 184 (278)
+..-..|.++..+-..+|.+||+|..||..+.++..+
T Consensus 122 ~~~~~~~~~~~~~~~~~s~frL~H~~t~~~L~~~~~~ 158 (190)
T PF02815_consen 122 EEKSSTGMGEDEIKTLDSYFRLRHVATGCWLHSHDVK 158 (190)
T ss_dssp EEEESSSCSSSSBBBTTSEEEEEETTTTEEEEEEEEE
T ss_pred EecccCCccCCcEEecccEEEEEECCcCEEEecCCcc
Confidence 3444557678888888999999999999988888754
No 30
>PF08169 RBB1NT: RBB1NT (NUC162) domain; InterPro: IPR012603 This domain is found N-terminal to the ARID/BRIGHT domain in DNA-binding proteins of the Retinoblastoma-binding protein 1 family [].; PDB: 2YRV_A.
Probab=27.34 E-value=75 Score=25.51 Aligned_cols=45 Identities=16% Similarity=0.438 Sum_probs=24.7
Q ss_pred eeeEeeeCCCCCCCCceeeeeEEEEecccCccccCcCCCCCeeEEEeeec
Q psy15210 104 IHRLVRKSPFDSSNNRHTSFSSLFVYPEINNLINININPADLRIDTYRAS 153 (278)
Q Consensus 104 vHr~~rvs~~~~~~kr~ts~a~V~v~P~~~~~~~~~i~~~dl~~~~~Rss 153 (278)
+=+|++| ++..++.+||-++.|-|...+ ++.|...++-+..++-|
T Consensus 8 lGkVV~V---~~~~~k~~W~PALVVsPsc~d--dv~VkKD~~lVRSFkD~ 52 (96)
T PF08169_consen 8 LGKVVCV---ESTKKKTSWFPALVVSPSCND--DVTVKKDQCLVRSFKDG 52 (96)
T ss_dssp TTSEEEE---E-SS-SS-EEEEEEE--SS-S--S----TT-EEEEESSS-
T ss_pred cCcEEEE---EcCCCCCceeeEEEEcCCccc--eeeeccceEEEEEeccC
Confidence 3467777 445568899999999998754 56777888888877643
No 31
>PF04149 DUF397: Domain of unknown function (DUF397); InterPro: IPR007278 The function of this family is unknown. It has been suggested that some members of this family are regulators of transcription.
Probab=25.91 E-value=1.1e+02 Score=21.82 Aligned_cols=19 Identities=21% Similarity=0.551 Sum_probs=11.7
Q ss_pred CceEEEEEcCCeeEEEEcC
Q psy15210 164 DSAVRITHIPTGIVVQCQN 182 (278)
Q Consensus 164 ~saVrl~h~Ptgi~v~~~~ 182 (278)
+++|.+...|.++.|.-+.
T Consensus 15 ~~CVEva~~~~~v~vRDSk 33 (56)
T PF04149_consen 15 GNCVEVARLPGGVAVRDSK 33 (56)
T ss_pred CCcEEEEeecceEEEecCC
Confidence 4567777777765555443
No 32
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=25.68 E-value=1.1e+02 Score=24.07 Aligned_cols=49 Identities=20% Similarity=0.304 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhhcCcEEEEeeecCCCcCceeEEEEEEeccchhccccc
Q psy15210 52 SMLLRQYLRYCERKGFIVEILEKSNGEITGIKTVTLKIKGKYAYGFLKS 100 (278)
Q Consensus 52 ~~L~~mY~~~a~~~g~~~~~v~~~~~~~~g~~sa~~~i~G~~ay~~lk~ 100 (278)
-++++.-++--+.+||.+-.+.-++.-.+|..++.+.|+|+.+..+|.+
T Consensus 14 pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s~R~~~lL~~ 62 (86)
T COG3978 14 PETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDSDRSVDLLTS 62 (86)
T ss_pred hHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcCCCChHHHHH
Confidence 3445556666789999999998877766888999999999988877754
No 33
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=24.80 E-value=3e+02 Score=24.44 Aligned_cols=35 Identities=29% Similarity=0.461 Sum_probs=27.6
Q ss_pred EEEcCCCh--HHHHHHHHHHHHHHHHHHhhcCcEEEEee
Q psy15210 37 DIQSGAGG--IEAQDWASMLLRQYLRYCERKGFIVEILE 73 (278)
Q Consensus 37 eI~aG~Gg--~Ea~~~~~~L~~mY~~~a~~~g~~~~~v~ 73 (278)
.|.-|.|| .+|+.||++|...|.+ ++.++..-.+.
T Consensus 44 vl~cGNGgSaadAqHfaael~gRf~~--eR~~lpaIaLt 80 (176)
T COG0279 44 VLACGNGGSAADAQHFAAELTGRFEK--ERPSLPAIALS 80 (176)
T ss_pred EEEECCCcchhhHHHHHHHHhhHHHh--cCCCCCeeEee
Confidence 45558886 5788899999999998 78888776665
No 34
>smart00322 KH K homology RNA-binding domain.
Probab=24.25 E-value=1.3e+02 Score=20.01 Aligned_cols=45 Identities=29% Similarity=0.426 Sum_probs=27.0
Q ss_pred CCCCccccccC--ceEEEEEcCCe---eEEEEcCcCCHHHHHHHHHHHHHHHH
Q psy15210 154 GAGGQHINKTD--SAVRITHIPTG---IVVQCQNDRSQHRNKSEAWDMLKSKL 201 (278)
Q Consensus 154 GpGGQ~VNk~~--saVrl~h~Ptg---i~v~~~~~RSq~~Nk~~A~~~L~~~L 201 (278)
|++|.+++... +.+++.-.+.+ -.+..... ..+...|...|...+
T Consensus 19 G~~G~~i~~i~~~~~~~i~~~~~~~~~~~v~i~g~---~~~v~~a~~~i~~~~ 68 (69)
T smart00322 19 GKGGSTIKKIEEETGVKIDIPEDGSEERVVEITGP---PENVEKAAELILEIL 68 (69)
T ss_pred CCCchHHHHHHHHHCCEEEECCCCCCccEEEEEcC---HHHHHHHHHHHHHHh
Confidence 78898887443 45554443322 44555544 577777777776654
No 35
>COG0103 RpsI Ribosomal protein S9 [Translation, ribosomal structure and biogenesis]
Probab=24.05 E-value=67 Score=27.20 Aligned_cols=17 Identities=12% Similarity=0.378 Sum_probs=14.4
Q ss_pred CCCCceeeeeEEEEecc
Q psy15210 115 SSNNRHTSFSSLFVYPE 131 (278)
Q Consensus 115 ~~~kr~ts~a~V~v~P~ 131 (278)
..|||+|+.|.|.+.|.
T Consensus 8 ~tGkRK~AvArv~l~~g 24 (130)
T COG0103 8 TTGKRKSAVARVRLVPG 24 (130)
T ss_pred eeccccceEEEEEEEcC
Confidence 46899999999998776
No 36
>smart00472 MIR Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases.
Probab=22.52 E-value=84 Score=21.45 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=17.9
Q ss_pred cCceEEEEEcCCeeEEEEcCcC
Q psy15210 163 TDSAVRITHIPTGIVVQCQNDR 184 (278)
Q Consensus 163 ~~saVrl~h~Ptgi~v~~~~~R 184 (278)
..+.|||+|..||--+.+++.+
T Consensus 6 ~g~~vrL~H~~tg~yL~s~~~~ 27 (57)
T smart00472 6 WGDVVRLRHVTTGRYLHSHENK 27 (57)
T ss_pred cCCEEEEEEhhhCcEeecCCCC
Confidence 3589999999999777777665
No 37
>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants. It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.
Probab=21.67 E-value=1.4e+02 Score=22.23 Aligned_cols=38 Identities=29% Similarity=0.358 Sum_probs=28.4
Q ss_pred HHHHHHHhhcCcEEEEeeecCCCcCc-eeEEEEEEeccc
Q psy15210 56 RQYLRYCERKGFIVEILEKSNGEITG-IKTVTLKIKGKY 93 (278)
Q Consensus 56 ~mY~~~a~~~g~~~~~v~~~~~~~~g-~~sa~~~i~G~~ 93 (278)
+.|..||...||.+..-........| +.++.+.-.-.|
T Consensus 1 ~fy~~yA~~~GF~vr~~~s~~~~~~~~~~~~~~~C~r~G 39 (91)
T PF03101_consen 1 DFYNSYARRHGFSVRKSSSRKSKKNGEIKRVTFVCSRGG 39 (91)
T ss_pred CHHHHhcCcCCeEEEEeeeEeCCCCceEEEEEEEECCcc
Confidence 36999999999999998765553444 777777776544
No 38
>COG1847 Jag Predicted RNA-binding protein [General function prediction only]
Probab=20.24 E-value=4.5e+02 Score=23.99 Aligned_cols=64 Identities=19% Similarity=0.193 Sum_probs=44.6
Q ss_pred CCCCceEEEEEcCCChHHHHHHHHHHHHHHHHHHhhcCcEEEEeeecCCCcCceeEEEEEEeccchhccc
Q psy15210 29 LDFNNCFIDIQSGAGGIEAQDWASMLLRQYLRYCERKGFIVEILEKSNGEITGIKTVTLKIKGKYAYGFL 98 (278)
Q Consensus 29 ~d~~~~~leI~aG~Gg~Ea~~~~~~L~~mY~~~a~~~g~~~~~v~~~~~~~~g~~sa~~~i~G~~ay~~l 98 (278)
+.++.+.+.+.+.+-+.--..++..+....+...+.+|+.+++--...+ +.+.+.|.|+. -+.|
T Consensus 42 ~g~k~a~v~v~~~~~~~~~~~~~~~~~~~L~ell~~m~~~~~i~v~~~~-----~~v~~~i~~~~-~~~L 105 (208)
T COG1847 42 FGKKPAVVKVEPKADETVIEKIAQEAKDYLEELLELMDFEVTITVSEEG-----RRVVVSIEGED-AGRL 105 (208)
T ss_pred CCCccccceeeeccccchhhHHHHHHHHHHHHHHHHhCCceEEEEeecC-----cEEEEEecCCc-hhhh
Confidence 6778888888888776213345556666666666899999888655433 57899999987 4444
Done!