RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15210
         (278 letters)



>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation;
           2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X
           2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
          Length = 365

 Score =  484 bits (1247), Expect = e-174
 Identities = 123/272 (45%), Positives = 173/272 (63%)

Query: 3   KEIEDNTNKLNNKIKEIEFHQFFNDPLDFNNCFIDIQSGAGGIEAQDWASMLLRQYLRYC 62
           + ++    +   K+ E+      N P    N  + IQ GAGG EA DWA MLLR Y R+ 
Sbjct: 85  EALKPELEEAAKKLDELYHQTLLNFPHAEKNAILTIQPGAGGTEACDWAEMLLRMYTRFA 144

Query: 63  ERKGFIVEILEKSNGEITGIKTVTLKIKGKYAYGFLKSESGIHRLVRKSPFDSSNNRHTS 122
           ER+GF VE+++ + G   GI    + +KG+ AYG L  E+G+HRLVR SPFD+S  RHTS
Sbjct: 145 ERQGFQVEVVDLTPGPEAGIDYAQILVKGENAYGLLSPEAGVHRLVRPSPFDASGRRHTS 204

Query: 123 FSSLFVYPEINNLINININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVQCQN 182
           F+ + V PE++  + + + P +LRID  RASG GGQ +N TDSAVR+ H+PTGI V CQ 
Sbjct: 205 FAGVEVIPEVDEEVEVVLKPEELRIDVMRASGPGGQGVNTTDSAVRVVHLPTGITVTCQT 264

Query: 183 DRSQHRNKSEAWDMLKSKLYKLKLQYQIKEKKKLEDTKKDIKWGYQIRSYVLDKSRIKDL 242
            RSQ +NK  A  +LK++LY+L+ + + +E K L    + I+WG QIRSYVLDK+ +KD 
Sbjct: 265 TRSQIKNKELALKILKARLYELERKKREEELKALRGEVRPIEWGSQIRSYVLDKNYVKDH 324

Query: 243 RTNLETKNIKDILDGDLDNFIIASLKQHLLNK 274
           RT L   + +++LDGDL + I A L+     +
Sbjct: 325 RTGLMRHDPENVLDGDLMDLIWAGLEWKAGRR 356


>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular
           mimicry, translation; 1.81A {Escherichia coli} SCOP:
           e.38.1.1 PDB: 1mi6_A 1ml5_Z*
          Length = 365

 Score =  484 bits (1247), Expect = e-174
 Identities = 167/271 (61%), Positives = 212/271 (78%)

Query: 1   MLKEIEDNTNKLNNKIKEIEFHQFFNDPLDFNNCFIDIQSGAGGIEAQDWASMLLRQYLR 60
              E     + L  K+ ++EF + F+   D  +C++DIQ+G+GG EAQDWASML R YLR
Sbjct: 95  TFNEAVAELDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLR 154

Query: 61  YCERKGFIVEILEKSNGEITGIKTVTLKIKGKYAYGFLKSESGIHRLVRKSPFDSSNNRH 120
           + E +GF  EI+E+S GE+ GIK+VT+KI G YAYG+L++E+G+HRLVRKSPFDS   RH
Sbjct: 155 WAESRGFKTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRH 214

Query: 121 TSFSSLFVYPEINNLINININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVQC 180
           TSFSS FVYPE+++ I+I INPADLRID YRASGAGGQH+N+T+SAVRITHIPTGIV QC
Sbjct: 215 TSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQC 274

Query: 181 QNDRSQHRNKSEAWDMLKSKLYKLKLQYQIKEKKKLEDTKKDIKWGYQIRSYVLDKSRIK 240
           QNDRSQH+NK +A   +K+KLY++++Q +  EK+ +ED K DI WG QIRSYVLD SRIK
Sbjct: 275 QNDRSQHKNKDQAMKQMKAKLYEVEMQKKNAEKQAMEDNKSDIGWGSQIRSYVLDDSRIK 334

Query: 241 DLRTNLETKNIKDILDGDLDNFIIASLKQHL 271
           DLRT +ET+N + +LDG LD FI ASLK  L
Sbjct: 335 DLRTGVETRNTQAVLDGSLDQFIEASLKAGL 365


>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide
           release factor 1, ribosome, structural genomics, BSGC
           structure funded by NIH; 2.65A {Thermotoga maritima}
           SCOP: e.38.1.1 PDB: 2fvo_A
          Length = 342

 Score =  262 bits (672), Expect = 4e-87
 Identities = 114/266 (42%), Positives = 166/266 (62%), Gaps = 11/266 (4%)

Query: 4   EIEDNTNKLNNKIKEIEFHQFFNDPLDFNNCFIDIQSGAGGIEAQDWASMLLRQYLRYCE 63
           EIE    +L+   +E+    F   P   +   ++I+ G GG EA  +A  L R Y RY E
Sbjct: 61  EIEKYEKELDQLYQEL---LFLLSPEASDKAIVEIRPGTGGEEAALFARDLFRMYTRYAE 117

Query: 64  RKGFIVEILEKSNGEITGIKTVTLKIKGKYAYGFLKSESGIHRLVRKSPFDSSNNR-HTS 122
           RKG+ +E+ E    ++ GI+ V   +KGK AYG LK ESG+HR V++ P   S  R HTS
Sbjct: 118 RKGWNLEVAEIHETDLGGIREVVFFVKGKNAYGILKYESGVHR-VQRVPVTESGGRIHTS 176

Query: 123 FSSLFVYPEINNLINININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVQCQN 182
            +++ V PEI    +I I P DL+I+T+RASG GGQ++NKT+SAVRITH+PTGIVV CQN
Sbjct: 177 TATVAVLPEIEE-KDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLPTGIVVSCQN 235

Query: 183 DRSQHRNKSEAWDMLKSKLYKLKLQYQIKEKKKLEDTKKDIKWG---YQIRSYVLDKSRI 239
           +RSQ++NK  A  +L+++LY+L+ + + +E    +  K  I  G    +IR+Y   ++R+
Sbjct: 236 ERSQYQNKQTALRILRARLYQLQKEQKEREIS--QKRKSQIGTGERSEKIRTYNFPQNRV 293

Query: 240 KDLRTNLETKNIKDILDGDLDNFIIA 265
            D R N  +  +++ILDGDLD  I  
Sbjct: 294 TDHRINYTSYRLQEILDGDLDEIISK 319


>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein,
           ribosomal protein, RNA-binding, binding, metal-binding,
           zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y
           3d5c_X 3mr8_V 3ms0_V
          Length = 354

 Score =  262 bits (672), Expect = 5e-87
 Identities = 94/266 (35%), Positives = 149/266 (56%), Gaps = 8/266 (3%)

Query: 4   EIEDNTNKLNNKIKEIEFHQFFNDPLDFNNCFIDIQSGAGGIEAQDWASMLLRQYLRYCE 63
           E E    +     KE+E H    DP+D  +  ++I++G GG EA  +A  L   YLR+ E
Sbjct: 77  EREALLARKEALEKELERHLLPKDPMDERDAIVEIRAGTGGEEAALFARDLFNMYLRFAE 136

Query: 64  RKGFIVEILEKSNGEITGIKTVTLKIKGKYAYGFLKSESGIHRLVRKSPFDSSNNR-HTS 122
             GF  E+L+    ++ G   V  +++G  AYG  K ESG+HR V++ P   +  R HTS
Sbjct: 137 EMGFETEVLDSHPTDLGGFSKVVFEVRGPGAYGTFKYESGVHR-VQRVPVTETQGRIHTS 195

Query: 123 FSSLFVYPEINNLINININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVQCQN 182
            +++ V P+     +  +N  ++RID  RASG GGQ +N TDSAVR+ H+PTGI+V CQ+
Sbjct: 196 TATVAVLPKAEE-EDFALNMDEIRIDVMRASGPGGQGVNTTDSAVRVVHLPTGIMVTCQD 254

Query: 183 DRSQHRNKSEAWDMLKSKLYKLKLQYQIKEKKKLEDTKKDIKWG---YQIRSYVLDKSRI 239
            RSQ +N+ +A  +L+S+L ++K   + +  +  +     I  G    +IR+Y   +SR+
Sbjct: 255 SRSQIKNREKALMILRSRLLEMKRAEEAERLR--KTRLAQIGTGERSEKIRTYNFPQSRV 312

Query: 240 KDLRTNLETKNIKDILDGDLDNFIIA 265
            D R    T +++ +L G L   + A
Sbjct: 313 TDHRIGFTTHDLEGVLSGHLTPILEA 338


>2b3t_B RF-1, peptide chain release factor 1; translation termination,
           methylation, conformational changes; HET: SAH; 3.10A
           {Escherichia coli} SCOP: e.38.1.1
          Length = 360

 Score =  259 bits (665), Expect = 6e-86
 Identities = 103/266 (38%), Positives = 159/266 (59%), Gaps = 7/266 (2%)

Query: 4   EIEDNTNKLNNKIKEIEFHQFFNDPLDFNNCFIDIQSGAGGIEAQDWASMLLRQYLRYCE 63
           E+ +   K     ++++      DP D  N F+++++G GG EA  +A  L R Y RY E
Sbjct: 81  ELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAE 140

Query: 64  RKGFIVEILEKSNGEITGIKTVTLKIKGKYAYGFLKSESGIHRLVRKSPFDSSNNR-HTS 122
            + + VEI+  S GE  G K +  KI G   YG LK ESG HR V++ P   S  R HTS
Sbjct: 141 ARRWRVEIMSASEGEHGGYKEIIAKISGDGVYGRLKFESGGHR-VQRVPATESQGRIHTS 199

Query: 123 FSSLFVYPEINNLINININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVQCQN 182
             ++ V PE+ +    ++NPADLRIDT+R+SGAGGQH+N TDSA+RITH+PTGIVV+CQ+
Sbjct: 200 ACTVAVMPELPDAELPDVNPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQD 259

Query: 183 DRSQHRNKSEAWDMLKSKLYKLKLQYQIKEKKKLEDTKKDIKWGY---QIRSYVLDKSRI 239
           +RSQH+NK++A  +L ++++  ++  + + +      +  +  G    + R+Y   + R+
Sbjct: 260 ERSQHKNKAKALSVLGARIHAAEMAKRQQAEA--STRRNLLGSGDRSDRNRTYNFPQGRV 317

Query: 240 KDLRTNLETKNIKDILDGDLDNFIIA 265
            D R NL    + ++++G LD  I  
Sbjct: 318 TDHRINLTLYRLDEVMEGKLDMLIEP 343


>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor
           1 (RF-1), structural joint center for structural
           genomics, JCSG; 2.34A {Streptococcus mutans}
          Length = 371

 Score =  259 bits (664), Expect = 1e-85
 Identities = 92/266 (34%), Positives = 147/266 (55%), Gaps = 8/266 (3%)

Query: 4   EIEDNTNKLNNKIKEIEFHQFFNDPLDFNNCFIDIQSGAGGIEAQDWASMLLRQYLRYCE 63
           E++++        +++ F     DP D  N  ++I+  AGG EA  +A  LL  Y +Y E
Sbjct: 95  ELKNSKVAKEEYEEKLRFLLLPKDPNDDKNIILEIRGAAGGDEAALFAGDLLNMYQKYAE 154

Query: 64  RKGFIVEILEKSNGEITGIKTVTLKIKGKYAYGFLKSESGIHRLVRKSPFDSSNNR-HTS 122
            +G+  E++E S   + G+K V   + G+  Y  LK ESG HR V++ P   S  R HTS
Sbjct: 155 NQGWKFEVMEASANGVGGLKEVVAMVSGQSVYSKLKYESGAHR-VQRVPVTESQGRVHTS 213

Query: 123 FSSLFVYPEINNLINININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVQCQN 182
            +++ V PE+   +   I+P DLR+D Y ASGAGGQ++NK  +AVRI H+PT I V+ Q 
Sbjct: 214 TATVLVMPEVEE-VEYEIDPKDLRVDIYHASGAGGQNVNKVATAVRIIHLPTNIKVEMQE 272

Query: 183 DRSQHRNKSEAWDMLKSKLYKLKLQYQIKEKKKLEDTKKDIKWG---YQIRSYVLDKSRI 239
           +R+Q +N+ +A  ++++++     Q    E+    + K  +  G    +IR+Y   ++R+
Sbjct: 273 ERTQQKNRDKAMKIIRARVADHFAQIAQDEQD--AERKSTVGTGDRSERIRTYNFPQNRV 330

Query: 240 KDLRTNLETKNIKDILDGDLDNFIIA 265
            D R  L  + +  IL G LD  I A
Sbjct: 331 TDHRIGLTLQKLDSILSGKLDEVIDA 356


>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial;
           GGQ domain, translation; NMR {Mus musculus}
          Length = 115

 Score =  175 bits (445), Expect = 4e-56
 Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 5/112 (4%)

Query: 100 SESGI--HRLVRKSPFDSSNNRHTSFSSLFVYPEINNLINININPADLRIDTYRASGAGG 157
             SG    RL  K           + S++ V    +    + +N ++L     +  G GG
Sbjct: 4   GSSGKWGLRLQEKPALLFP---GMAASTVQVAGRKDYPALLPLNESELEEQFVKGHGPGG 60

Query: 158 QHINKTDSAVRITHIPTGIVVQCQNDRSQHRNKSEAWDMLKSKLYKLKLQYQ 209
           Q  NKT + V + H+P+GIVV+C   RS  +N+  A  +L+ K+        
Sbjct: 61  QATNKTSNCVVLKHVPSGIVVKCHQTRSVDQNRKIARKVLQEKVDVFYNSGP 112


>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F
           alternative rescue factor, ARFB, release factor, rescue
           of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
          Length = 140

 Score =  113 bits (285), Expect = 1e-31
 Identities = 29/137 (21%), Positives = 54/137 (39%), Gaps = 29/137 (21%)

Query: 136 INININPADLRIDTYRASGAGGQHINKTDSAVRIT------------------------H 171
            ++ I   +L I   RA GAGGQH+NKT +A+ +                          
Sbjct: 6   RHVAIPDGELEITAIRAQGAGGQHVNKTSTAIHLRFDIRASSLPEYYKERLLAASHHLIS 65

Query: 172 IPTGIVVQCQNDRSQHRNKSEAWDMLKSKLYKLKLQYQIKEKKKLEDTKKDIKWGYQIRS 231
               IV++ Q  RSQ  N+  A   L + + +L  + + +   +     K+ +   + + 
Sbjct: 66  SDGVIVIKAQEYRSQELNREAALARLVAMIKELTTEKKARRPTRPTRASKERRLASKAQK 125

Query: 232 YVLDKSRIKDLRTNLET 248
                S +K +R  + +
Sbjct: 126 -----SSVKAMRGKVRS 137


>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural
           genomics, PSI-2, protein STRU initiative; NMR
           {Pseudomonas syringae PV}
          Length = 108

 Score = 79.6 bits (196), Expect = 3e-19
 Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 24/91 (26%)

Query: 137 NININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTG--------------------- 175
           N+++  A++ +   RA GAGGQ++NK  SA+ +                           
Sbjct: 7   NVHLPDAEIELTAIRAQGAGGQNVNKVSSAMHLRFDINASSLPPFYKERLLALNDSRITS 66

Query: 176 ---IVVQCQNDRSQHRNKSEAWDMLKSKLYK 203
              IV++ Q  R+Q +N+++A   L   +  
Sbjct: 67  DGVIVLKAQQYRTQEQNRADALLRLSELIVN 97


>1j26_A Immature colon carcinoma transcript 1; peptide chain release
           factors, RF-1, the GGQ motif, immature carcinoma
           transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
          Length = 112

 Score = 73.2 bits (179), Expect = 1e-16
 Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 25/99 (25%)

Query: 130 PEINNLINININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTG-------------- 175
            E     +  I    L I   R+SG GGQ++NK +S   +                    
Sbjct: 7   GEHAKQASSYIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIAL 66

Query: 176 -----------IVVQCQNDRSQHRNKSEAWDMLKSKLYK 203
                      +V+  ++ R Q RN +E    ++  + +
Sbjct: 67  THKNKINKAGELVLTSESSRYQFRNLAECLQKIRDMIAE 105


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 37.0 bits (85), Expect = 0.006
 Identities = 40/254 (15%), Positives = 76/254 (29%), Gaps = 97/254 (38%)

Query: 51  ASMLLRQYLRYCERKGFIVEILEKSNGEITGIKTV--TLK-------IKGKYA--YGF-- 97
           + ML    +    ++  + + + K+N  +   K V  +L        + G     YG   
Sbjct: 336 SPMLS---ISNLTQE-QVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNL 391

Query: 98  ----LKSESGIHRLVRKSPFDSSNNRHTSFSSLF--------------VYPEINN---LI 136
                K+ SG+ +   + PF     R   FS+ F                  IN      
Sbjct: 392 TLRKAKAPSGLDQ--SRIPFSE---RKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKN 446

Query: 137 NININPADLRI---DTYRASGAGGQHINKTDSAVRITHIPTGIVVQCQNDRSQHRNKSEA 193
           N++ N  D++I   DT+      G  +     ++    +   I+                
Sbjct: 447 NVSFNAKDIQIPVYDTF-----DGSDLRVLSGSISERIVDC-IIRLPVK----------- 489

Query: 194 WDMLKSKLYKLKLQYQIKEKKKLEDTKKDIKWGYQIRSYVLD-----KSRIKDL-RTNLE 247
           W+                       T+          +++LD      S +  L   N +
Sbjct: 490 WETT---------------------TQFKA-------THILDFGPGGASGLGVLTHRNKD 521

Query: 248 TKNIKDILDGDLDN 261
              ++ I+ G LD 
Sbjct: 522 GTGVRVIVAGTLDI 535



 Score = 30.4 bits (68), Expect = 0.88
 Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 19/48 (39%)

Query: 60   RYCERKGFIVEILEKSN-----------GEITGIKTVT-----LKIKG 91
            R  +R G++VEI    N           G++  + TVT     +K++ 
Sbjct: 1832 RVGKRTGWLVEI---VNYNVENQQYVAAGDLRALDTVTNVLNFIKLQK 1876


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 36.0 bits (82), Expect = 0.013
 Identities = 32/206 (15%), Positives = 60/206 (29%), Gaps = 74/206 (35%)

Query: 113 FDSSNNRHTSFSSLFVYPEINNLINININPADLRI---------------DTYRASGAGG 157
            + +  R   F  L V+P      + +I    L +                 ++ S    
Sbjct: 366 LEPAEYRK-MFDRLSVFPP-----SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419

Query: 158 QHINKTDSAVRITHIPTGIVVQCQNDRSQHRNKSEAWDMLKSKLYKLKLQYQIKEKKKLE 217
           Q   K +S + I  I   + V+ +N+ + HR               +   Y I +    +
Sbjct: 420 Q--PK-ESTISIPSIYLELKVKLENEYALHR--------------SIVDHYNIPKTFDSD 462

Query: 218 DTKKDIKWGYQIRSYV--------------------LD----KSRIKDLRTNLE-TKNIK 252
           D        Y   S++                    LD    + +I+   T    + +I 
Sbjct: 463 DLIPPYLDQY-FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL 521

Query: 253 DILDGDLDNFIIASLKQHLLNKITKN 278
           + L   L  +     K +    I  N
Sbjct: 522 NTL-QQLKFY-----KPY----ICDN 537


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 27.6 bits (60), Expect = 2.7
 Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 12/39 (30%)

Query: 212 EK---KKLEDTKKDIKWGYQIRSYVLDKSRIKDLRTNLE 247
           EK   KKL+ +         ++ Y  D +    ++  +E
Sbjct: 18  EKQALKKLQAS---------LKLYADDSAPALAIKATME 47


>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein,
           GTPase-activating protein for RHO family members,
           structural genomics, NPPSFA; NMR {Homo sapiens} PDB:
           2ee5_A
          Length = 209

 Score = 26.8 bits (60), Expect = 6.9
 Identities = 4/37 (10%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 236 KSRIKDLRTNLETKNIKDILDGDLDNFIIAS-LKQHL 271
           K+   +++   +  +  +++  ++    +A  LK   
Sbjct: 55  KTDQDNIQKQFDQDHNINLVSMEVTVNAVAGALKAFF 91


>2yik_A Endoglucanase; hydrolase; 2.10A {Clostridium thermocellum}
          Length = 611

 Score = 27.3 bits (60), Expect = 7.1
 Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 4/60 (6%)

Query: 218 DTKKDIKWGYQIRSYVLDKSRIKDLRTNLETKNIKDILDGDLDNFIIASLKQHLLNKITK 277
           D K        ++ Y++          N   +      DG +++  +  LK++LL  I  
Sbjct: 553 DQKVTSTDYTMLKRYLMKSIDR----FNTSEQAADLNRDGKINSTDLTILKRYLLYSIPS 608


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.318    0.136    0.390 

Gapped
Lambda     K      H
   0.267   0.0460    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,202,637
Number of extensions: 245308
Number of successful extensions: 588
Number of sequences better than 10.0: 1
Number of HSP's gapped: 573
Number of HSP's successfully gapped: 28
Length of query: 278
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 186
Effective length of database: 4,133,061
Effective search space: 768749346
Effective search space used: 768749346
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.4 bits)