RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15210
(278 letters)
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2)
{Escherichia coli [TaxId: 562]}
Length = 362
Score = 256 bits (654), Expect = 7e-85
Identities = 167/271 (61%), Positives = 212/271 (78%)
Query: 1 MLKEIEDNTNKLNNKIKEIEFHQFFNDPLDFNNCFIDIQSGAGGIEAQDWASMLLRQYLR 60
E + L K+ ++EF + F+ D +C++DIQ+G+GG EAQDWASML R YLR
Sbjct: 92 TFNEAVAELDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLR 151
Query: 61 YCERKGFIVEILEKSNGEITGIKTVTLKIKGKYAYGFLKSESGIHRLVRKSPFDSSNNRH 120
+ E +GF EI+E+S GE+ GIK+VT+KI G YAYG+L++E+G+HRLVRKSPFDS RH
Sbjct: 152 WAESRGFKTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRH 211
Query: 121 TSFSSLFVYPEINNLINININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVQC 180
TSFSS FVYPE+++ I+I INPADLRID YRASGAGGQH+N+T+SAVRITHIPTGIV QC
Sbjct: 212 TSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQC 271
Query: 181 QNDRSQHRNKSEAWDMLKSKLYKLKLQYQIKEKKKLEDTKKDIKWGYQIRSYVLDKSRIK 240
QNDRSQH+NK +A +K+KLY++++Q + EK+ +ED K DI WG QIRSYVLD SRIK
Sbjct: 272 QNDRSQHKNKDQAMKQMKAKLYEVEMQKKNAEKQAMEDNKSDIGWGSQIRSYVLDDSRIK 331
Query: 241 DLRTNLETKNIKDILDGDLDNFIIASLKQHL 271
DLRT +ET+N + +LDG LD FI ASLK L
Sbjct: 332 DLRTGVETRNTQAVLDGSLDQFIEASLKAGL 362
>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1
{Escherichia coli [TaxId: 562]}
Length = 344
Score = 201 bits (511), Expect = 2e-63
Identities = 100/266 (37%), Positives = 156/266 (58%), Gaps = 1/266 (0%)
Query: 6 EDNTNKLNNKIKEIEFHQFFNDPLDFNNCFIDIQSGAGGIEAQDWASMLLRQYLRYCERK 65
+ K ++++ DP D N F+++++G GG EA +A L R Y RY E +
Sbjct: 73 REAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAEAR 132
Query: 66 GFIVEILEKSNGEITGIKTVTLKIKGKYAYGFLKSESGIHRLVRKSPFDSSNNRHTSFSS 125
+ VEI+ S GE G K + KI G YG LK ESG HR+ R +S HTS +
Sbjct: 133 RWRVEIMSASEGEHGGYKEIIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACT 192
Query: 126 LFVYPEINNLINININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVQCQNDRS 185
+ V PE+ + ++NPADLRIDT+R+SGAGGQH+N TDSA+RITH+PTGIVV+CQ++RS
Sbjct: 193 VAVMPELPDAELPDVNPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERS 252
Query: 186 QHRNKSEAWDMLKSKLYKLKLQYQIKEKKKLEDTKK-DIKWGYQIRSYVLDKSRIKDLRT 244
QH+NK++A +L ++++ ++ + + + + R+Y + R+ D R
Sbjct: 253 QHKNKAKALSVLGARIHAAEMAKRQQAEASTRRNLLGSGDRSDRNRTYNFPQGRVTDHRI 312
Query: 245 NLETKNIKDILDGDLDNFIIASLKQH 270
NL + ++++G LD I +++H
Sbjct: 313 NLTLYRLDEVMEGKLDMLIEPIIQEH 338
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1
{Thermotoga maritima [TaxId: 2336]}
Length = 333
Score = 181 bits (461), Expect = 3e-56
Identities = 109/282 (38%), Positives = 167/282 (59%), Gaps = 10/282 (3%)
Query: 1 MLKEIEDNTNKLNNKIKEIEF----HQFFNDPLDFNNCFIDIQSGAGGIEAQDWASMLLR 56
+L+E +N ++ KE++ F P + ++I+ G GG EA +A L R
Sbjct: 51 LLREEGENELEIEKYEKELDQLYQELLFLLSPEASDKAIVEIRPGTGGEEAALFARDLFR 110
Query: 57 QYLRYCERKGFIVEILEKSNGEITGIKTVTLKIKGKYAYGFLKSESGIHRLVRKSPFDSS 116
Y RY ERKG+ +E+ E ++ GI+ V +KGK AYG LK ESG+HR+ R +S
Sbjct: 111 MYTRYAERKGWNLEVAEIHETDLGGIREVVFFVKGKNAYGILKYESGVHRVQRVPVTESG 170
Query: 117 NNRHTSFSSLFVYPEINNLINININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGI 176
HTS ++ +I I P DL+I+T+RASG GGQ++NKT+SAVRITH+PTGI
Sbjct: 171 GRIHTSTAT-VAVLPEIEEKDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLPTGI 229
Query: 177 VVQCQNDRSQHRNKSEAWDMLKSKLYKLKLQYQIKEKKKLEDTKKDIKWG---YQIRSYV 233
VV CQN+RSQ++NK A +L+++LY+L+ + + +E + K I G +IR+Y
Sbjct: 230 VVSCQNERSQYQNKQTALRILRARLYQLQKEQKEREIS--QKRKSQIGTGERSEKIRTYN 287
Query: 234 LDKSRIKDLRTNLETKNIKDILDGDLDNFIIASLKQHLLNKI 275
++R+ D R N + +++ILDGDLD I ++ + N +
Sbjct: 288 FPQNRVTDHRINYTSYRLQEILDGDLDEIISKLIEHDIENNL 329
>d1j26a_ d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [TaxId:
10090]}
Length = 112
Score = 79.6 bits (196), Expect = 2e-19
Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 25/99 (25%)
Query: 130 PEINNLINININPADLRIDTYRASGAGGQHINKTDSAVRITHI----------------- 172
E + I L I R+SG GGQ++NK +S +
Sbjct: 7 GEHAKQASSYIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIAL 66
Query: 173 --------PTGIVVQCQNDRSQHRNKSEAWDMLKSKLYK 203
+V+ ++ R Q RN +E ++ + +
Sbjct: 67 THKNKINKAGELVLTSESSRYQFRNLAECLQKIRDMIAE 105
>d1otka_ a.25.1.2 (A:) Phenylacetic acid degradation protein PaaC
{Escherichia coli [TaxId: 562]}
Length = 244
Score = 28.6 bits (64), Expect = 0.63
Identities = 16/91 (17%), Positives = 32/91 (35%), Gaps = 11/91 (12%)
Query: 23 QFFNDPLDFNNCFI-DIQSGAGGIEAQDWASMLLRQYLRYCERKGFIVEILEKSNGEITG 81
F D F+N + + +G ++A + RQY ++E + ++
Sbjct: 70 AFTRDERQFSNLLLVEQPNG-------NFADTIARQYFIDAWHVALFTRLMESRDPQLAA 122
Query: 82 IKTVTLKIKGKYAYGFLKSESGIHRLVRKSP 112
I + K + Y S + RL +
Sbjct: 123 I---SAKAIKEARYHLRFSRGWLERLGNGTD 150
>d1s5ja2 e.8.1.1 (A:450-864) Family B DNA polymerase {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 415
Score = 28.0 bits (61), Expect = 1.4
Identities = 18/103 (17%), Positives = 38/103 (36%), Gaps = 18/103 (17%)
Query: 50 WASMLLRQYLRYCERKGFIVEILEKSNGEITGIKTVTLKIKGKYAYGF-LKSESGIHRLV 108
W L ++ +++ + E+ + + I+T L Y + +GI +
Sbjct: 5 WVKNLY---YWEHRKRNWLIPLKEEILAKSSNIRTSALIKGKGYKGAVVIDPPAGIFFNI 61
Query: 109 RKSPFDSSNNRHTSFSSLFVYPEINNLINININPADLRIDTYR 151
+ D F+SL YP I + N++ + I +
Sbjct: 62 --TVLD--------FASL--YPSI--IRTWNLSYETVDIQQCK 90
>d1ywfa1 c.45.1.5 (A:4-275) Phosphotyrosine protein phosphatase PtpB
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 272
Score = 26.3 bits (57), Expect = 4.5
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 223 IKWGYQIRSYVLDKSRIKDLRTNLETKNIKDILD 256
++ G RS L + T L I D+ D
Sbjct: 19 LRPGRLFRSSELSRLDDAGRAT-LRRLGITDVAD 51
>d2d6fa2 c.88.1.1 (A:84-435) Glutamyl-tRNA(Gln) amidotransferase
subunit D, GatD {Methanobacterium thermoautotrophicum
[TaxId: 145262]}
Length = 352
Score = 25.9 bits (56), Expect = 6.0
Identities = 14/83 (16%), Positives = 23/83 (27%), Gaps = 2/83 (2%)
Query: 104 IHRLVRKSPFDSSNNRHTSFSSLFVYPEINNLINININPADLRIDTYRASGAGGQHINKT 163
+R + S+ + + YP I+ I R +G G
Sbjct: 202 NYRKRGSDELELSDRVEERVAFIKSYPGISPDIIKWHLDEGYRGIVIEGTGLGHCPDTLI 261
Query: 164 DSAVRIT--HIPTGIVVQCQNDR 184
+P + QC N R
Sbjct: 262 PVIGEAHDMGVPVAMTSQCLNGR 284
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.390
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,053,954
Number of extensions: 49713
Number of successful extensions: 171
Number of sequences better than 10.0: 1
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 16
Length of query: 278
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 194
Effective length of database: 1,254,276
Effective search space: 243329544
Effective search space used: 243329544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.1 bits)