Query psy15211
Match_columns 68
No_of_seqs 124 out of 1007
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 23:32:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15211.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15211hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03952 Enolase_N: Enolase, N 100.0 1E-29 2.3E-34 163.6 5.5 67 2-68 64-132 (132)
2 PRK08350 hypothetical protein; 99.9 6.7E-28 1.4E-32 174.2 6.1 67 2-68 51-119 (341)
3 COG0148 Eno Enolase [Carbohydr 99.9 6.8E-27 1.5E-31 171.8 6.1 67 2-68 65-133 (423)
4 PLN00191 enolase 99.9 2.7E-24 5.8E-29 159.9 6.5 67 2-68 88-156 (457)
5 KOG2670|consensus 99.9 1.5E-24 3.3E-29 157.7 4.6 67 2-68 64-134 (433)
6 PTZ00081 enolase; Provisional 99.9 7.3E-24 1.6E-28 156.9 6.2 67 2-68 65-139 (439)
7 PTZ00378 hypothetical protein; 99.9 2.3E-22 4.9E-27 151.4 6.2 62 7-68 111-174 (518)
8 cd03313 enolase Enolase: Enola 99.8 2.1E-21 4.5E-26 142.0 6.8 67 2-68 61-129 (408)
9 PRK00077 eno enolase; Provisio 99.8 1.3E-20 2.7E-25 138.5 6.8 67 2-68 66-134 (425)
10 TIGR01060 eno phosphopyruvate 99.8 4.9E-20 1.1E-24 135.4 7.2 67 2-68 63-131 (425)
11 cd03327 MR_like_2 Mandelate ra 98.8 9.5E-09 2.1E-13 73.3 6.1 66 3-68 34-101 (341)
12 PF02746 MR_MLE_N: Mandelate r 98.8 1.2E-08 2.7E-13 62.8 5.1 60 4-68 56-116 (117)
13 PRK15440 L-rhamnonate dehydrat 98.6 2.1E-07 4.4E-12 68.4 6.6 64 5-68 83-148 (394)
14 cd03314 MAL Methylaspartate am 98.5 2.3E-07 5E-12 67.9 6.4 65 4-68 52-116 (369)
15 TIGR01502 B_methylAsp_ase meth 98.5 2.5E-07 5.5E-12 68.5 6.2 64 4-68 89-152 (408)
16 cd03317 NAAAR N-acylamino acid 98.5 2.7E-07 5.8E-12 65.7 6.0 60 4-68 60-119 (354)
17 cd03328 MR_like_3 Mandelate ra 98.5 3.1E-07 6.7E-12 66.0 6.3 64 5-68 54-119 (352)
18 PRK15072 bifunctional D-altron 98.4 7.7E-07 1.7E-11 65.0 6.8 64 5-68 45-109 (404)
19 cd03329 MR_like_4 Mandelate ra 98.4 6.1E-07 1.3E-11 64.6 5.9 62 4-68 58-119 (368)
20 cd03322 rpsA The starvation se 98.4 9.6E-07 2.1E-11 63.6 6.9 64 5-68 44-108 (361)
21 cd03316 MR_like Mandelate race 98.3 1.2E-06 2.6E-11 62.1 5.9 65 4-68 53-119 (357)
22 cd03318 MLE Muconate Lactonizi 98.3 2.3E-06 5E-11 61.3 6.4 60 4-68 64-124 (365)
23 cd03326 MR_like_1 Mandelate ra 98.3 2.9E-06 6.3E-11 62.1 6.3 62 6-68 60-133 (385)
24 TIGR02534 mucon_cyclo muconate 98.2 3.4E-06 7.4E-11 60.6 6.4 60 4-68 63-123 (368)
25 cd03325 D-galactonate_dehydrat 98.2 3.9E-06 8.4E-11 60.2 6.5 62 6-68 43-105 (352)
26 PRK14017 galactonate dehydrata 98.2 6.9E-06 1.5E-10 59.5 6.8 60 9-68 46-106 (382)
27 cd03324 rTSbeta_L-fuconate_deh 98.1 8.1E-06 1.8E-10 60.4 6.6 62 7-68 64-134 (415)
28 cd03321 mandelate_racemase Man 98.1 9.8E-06 2.1E-10 58.1 6.6 61 6-68 61-124 (355)
29 TIGR03247 glucar-dehydr glucar 98.1 1E-05 2.3E-10 60.3 6.0 61 7-68 61-132 (441)
30 TIGR01928 menC_lowGC/arch o-su 98.0 1.2E-05 2.6E-10 57.2 5.6 59 4-68 57-115 (324)
31 COG4948 L-alanine-DL-glutamate 98.0 2E-05 4.3E-10 56.7 5.7 59 10-68 64-123 (372)
32 cd03319 L-Ala-DL-Glu_epimerase 97.9 3.6E-05 7.7E-10 54.1 6.2 57 5-67 59-115 (316)
33 cd03323 D-glucarate_dehydratas 97.4 0.00046 1E-08 50.6 5.9 65 3-68 53-129 (395)
34 PF05034 MAAL_N: Methylasparta 96.9 0.0033 7.3E-08 42.0 5.3 58 4-62 90-147 (159)
35 PRK15129 L-Ala-D/L-Glu epimera 95.7 0.023 4.9E-07 40.4 4.7 52 4-68 59-111 (321)
36 cd00308 enolase_like Enolase-s 94.6 0.023 4.9E-07 38.3 1.8 25 44-68 43-67 (229)
37 PLN02980 2-oxoglutarate decarb 94.2 0.057 1.2E-06 46.1 3.7 53 10-68 1011-1063(1655)
38 cd03315 MLE_like Muconate lact 90.8 0.18 3.9E-06 34.6 2.1 29 40-68 40-68 (265)
39 COG3799 Mal Methylaspartate am 72.7 11 0.00024 28.2 5.1 55 5-61 91-146 (410)
40 PRK05105 O-succinylbenzoate sy 71.4 9.1 0.0002 27.3 4.3 23 44-66 85-107 (322)
41 cd05024 S-100A10 S-100A10: A s 57.7 24 0.00052 21.4 3.7 49 7-57 33-86 (91)
42 PF11307 DUF3109: Protein of u 50.9 5.8 0.00013 27.2 0.3 14 55-68 151-164 (183)
43 TIGR03884 sel_bind_Methan sele 50.7 0.44 9.5E-06 28.3 -4.6 26 25-50 26-51 (74)
44 COG0533 QRI7 Metal-dependent p 47.7 27 0.00058 26.0 3.3 22 44-65 85-106 (342)
45 TIGR00228 ruvC crossover junct 43.8 23 0.00051 23.4 2.3 28 40-67 68-99 (156)
46 PF06545 DUF1116: Protein of u 43.1 94 0.002 21.8 5.3 48 5-60 108-157 (216)
47 PF11293 DUF3094: Protein of u 41.2 27 0.00058 19.6 1.9 17 18-34 4-20 (55)
48 COG1214 Inactive homolog of me 39.9 23 0.00051 24.1 1.9 23 44-66 72-94 (220)
49 PF09715 Plasmod_dom_1: Plasmo 38.7 25 0.00054 20.5 1.6 50 19-68 11-60 (67)
50 TIGR01927 menC_gamma/gm+ o-suc 37.4 64 0.0014 22.8 3.9 40 5-59 55-94 (307)
51 COG3856 Sbp Uncharacterized co 36.7 34 0.00073 21.6 2.1 25 38-65 60-84 (113)
52 KOG4253|consensus 35.0 66 0.0014 21.9 3.4 45 23-67 76-123 (175)
53 TIGR01519 plasmod_dom_1 Plasmo 33.5 26 0.00056 20.6 1.1 51 18-68 10-60 (70)
54 cd06405 PB1_Mekk2_3 The PB1 do 33.4 31 0.00066 20.7 1.4 16 19-34 49-64 (79)
55 TIGR03725 bact_YeaZ universal 32.6 55 0.0012 21.7 2.8 26 41-66 65-90 (202)
56 PTZ00340 O-sialoglycoprotein e 32.4 71 0.0015 23.6 3.5 26 41-66 81-106 (345)
57 TIGR03723 bact_gcp putative gl 32.3 79 0.0017 22.6 3.7 26 40-65 80-105 (314)
58 PF12091 DUF3567: Protein of u 32.0 74 0.0016 19.3 3.0 27 6-34 49-75 (85)
59 cd07050 BMC_EutL_repeat2 ethan 29.9 43 0.00092 20.4 1.7 44 15-59 21-73 (87)
60 PF03640 Lipoprotein_15: Secre 29.1 17 0.00037 19.4 -0.1 10 58-67 14-23 (48)
61 cd05027 S-100B S-100B: S-100B 26.9 80 0.0017 18.4 2.5 19 15-34 43-61 (88)
62 cd05022 S-100A13 S-100A13: S-1 26.6 1.4E+02 0.0031 17.5 3.6 27 7-34 31-57 (89)
63 PF12431 CitT: Transcriptional 26.3 46 0.00099 16.0 1.2 12 22-33 2-13 (30)
64 PF06947 DUF1290: Protein of u 26.1 67 0.0015 19.6 2.1 24 39-65 41-64 (88)
65 PF08815 Nuc_rec_co-act: Nucle 24.4 32 0.00069 19.0 0.4 23 9-31 11-33 (51)
66 PRK01217 hypothetical protein; 23.0 9.8 0.00021 23.9 -2.1 20 35-54 74-93 (114)
67 PRK03732 hypothetical protein; 21.8 5.7 0.00012 25.1 -3.3 18 35-52 74-91 (114)
68 COG5109 Uncharacterized conser 20.9 1.7E+02 0.0037 22.2 3.7 31 4-34 238-268 (396)
69 PF00814 Peptidase_M22: Glycop 20.5 1.1E+02 0.0024 21.3 2.6 26 41-66 61-86 (268)
No 1
>PF03952 Enolase_N: Enolase, N-terminal domain; InterPro: IPR020811 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3OTR_F 3QTP_A 1PDY_A 1PDZ_A 3TQP_B 2PTZ_A 2PTW_A ....
Probab=99.96 E-value=1e-29 Score=163.56 Aligned_cols=67 Identities=39% Similarity=0.577 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHHHHcCCChhhHHHHHHHHHhhc--cCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 2 NADILLESEISEAIMGFSSNEQFFLDYTLTNLS--KNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 2 ~Av~~in~~i~p~L~g~~~~~q~~iD~~L~~ld--~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
+||++||+.|+|+|+|++++||++||+.|+++| +|||++|+|+++|||||+|||+|+.+++|||+||
T Consensus 64 ~Av~~vn~~i~~~L~g~~~~dQ~~iD~~L~~lDgT~nk~~lGaNa~lavS~A~a~AaA~~~~~pL~~~l 132 (132)
T PF03952_consen 64 KAVENVNEIIAPALIGLDPTDQEEIDQILIELDGTPNKSRLGANAILAVSLAVAKAAAAAKGIPLYRYL 132 (132)
T ss_dssp HHHHHHHHTHHHHHTTSBTT-HHHHHHHHHHHHTSTTSTTT-HHHHHHHHHHHHHHHHHHHTS-HHHHH
T ss_pred hhhhhHHHHHHHHHHhcchhhHHHhCccceeccCChhhhcccchHHHHHHHHHHHHHHHHcCCChhhcC
Confidence 799999999999999999999999999999999 9999999999999999999999999999999996
No 2
>PRK08350 hypothetical protein; Provisional
Probab=99.94 E-value=6.7e-28 Score=174.17 Aligned_cols=67 Identities=34% Similarity=0.517 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHHHHcCCChhhHHHHHHHHHhhc--cCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 2 NADILLESEISEAIMGFSSNEQFFLDYTLTNLS--KNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 2 ~Av~~in~~i~p~L~g~~~~~q~~iD~~L~~ld--~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
+||++||+.|+|+|+|+|++||++||+.|+++| +|||++|+||++|||||+|||+|.++|+|||+||
T Consensus 51 ~AV~nVn~~Iap~LiG~d~~dQ~~ID~~mielDGT~nKs~lGaNAiLavS~A~akAaA~~~~~PLy~yl 119 (341)
T PRK08350 51 RAVSEVDEIIGPELIGFDASEQELIDSYLWEIDGTEDFSHIGANTALAVSVAVAKAAANSKNMPLYSYI 119 (341)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccCCccccccCchhhHHHHHHHHHHHHHHcCCcHHHHh
Confidence 799999999999999999999999999999999 9999999999999999999999999999999997
No 3
>COG0148 Eno Enolase [Carbohydrate transport and metabolism]
Probab=99.93 E-value=6.8e-27 Score=171.77 Aligned_cols=67 Identities=40% Similarity=0.659 Sum_probs=66.1
Q ss_pred hHHHHHHHHHHHHHcCCChhhHHHHHHHHHhhc--cCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 2 NADILLESEISEAIMGFSSNEQFFLDYTLTNLS--KNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 2 ~Av~~in~~i~p~L~g~~~~~q~~iD~~L~~ld--~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
+||++||++|+|+|+|+|++||..||+.|+++| +|||++|+|+++|||||++||+|+++++|||+||
T Consensus 65 ~AV~nVn~~Iap~LiG~da~dQ~~ID~~lielDGT~Nks~lGaNailgVSlAvAkAAA~~l~~PLy~Yl 133 (423)
T COG0148 65 KAVANVNEIIAPALIGLDATDQALIDSLLIELDGTENKSKLGANAILGVSLAVAKAAAASLGIPLYRYL 133 (423)
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHHccCCCcccccccHHHHHHHHHHHHHHHHhcCCcHHHHh
Confidence 699999999999999999999999999999999 9999999999999999999999999999999997
No 4
>PLN00191 enolase
Probab=99.90 E-value=2.7e-24 Score=159.87 Aligned_cols=67 Identities=34% Similarity=0.514 Sum_probs=65.9
Q ss_pred hHHHHHHHHHHHHHcCCChhhHHHHHHHHHhhc--cCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 2 NADILLESEISEAIMGFSSNEQFFLDYTLTNLS--KNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 2 ~Av~~in~~i~p~L~g~~~~~q~~iD~~L~~ld--~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
+||++||+.|+|+|+|+|++||++||+.|+++| +|||++|+||++|||||++||+|+.+|+|||+||
T Consensus 88 ~Av~~v~~~ia~~LiG~~~~dq~~iD~~l~~ldgt~nk~~lGanailavS~A~a~AaA~~~~~PLy~~l 156 (457)
T PLN00191 88 KAVKNVNEIIAPALIGMDPTDQTQIDNFMLELDGTPNKGKLGANAILAVSLAVCKAGAAEKGVPLYKHI 156 (457)
T ss_pred HHHHHHHHHHHHHHcCCChhhHHHHHHHHHHccCCCCccccchhHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 799999999999999999999999999999999 9999999999999999999999999999999996
No 5
>KOG2670|consensus
Probab=99.90 E-value=1.5e-24 Score=157.67 Aligned_cols=67 Identities=34% Similarity=0.468 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHHHHcCC--ChhhHHHHHHHHHhhc--cCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 2 NADILLESEISEAIMGF--SSNEQFFLDYTLTNLS--KNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 2 ~Av~~in~~i~p~L~g~--~~~~q~~iD~~L~~ld--~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
+||.+||+.|+|+|+++ |+++|+.||+.|+++| +|||++|+|||++||+|+|||+|..+++|||+||
T Consensus 64 kaV~niN~~i~pali~~~~dv~~Q~~iD~~mi~LDGTeNKsklGaNaIlgvSlavckagAa~k~vplykhi 134 (433)
T KOG2670|consen 64 KAVGNINNTIAPALIKKNLDVTDQKAIDNFMIELDGTENKSKLGANAILGVSLAVCKAGAAEKGVPLYKHI 134 (433)
T ss_pred HHHHHHHHHHHHHHHccCCChhhHHHHHHHHHhccCCcccccccchhhHHHHHHHHhhhhhhcCCcHHHHH
Confidence 79999999999999977 9999999999999999 9999999999999999999999999999999996
No 6
>PTZ00081 enolase; Provisional
Probab=99.89 E-value=7.3e-24 Score=156.85 Aligned_cols=67 Identities=37% Similarity=0.547 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHHHHcCCChhhHHHHHHHHHh-hc--cC-----cchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 2 NADILLESEISEAIMGFSSNEQFFLDYTLTN-LS--KN-----KSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 2 ~Av~~in~~i~p~L~g~~~~~q~~iD~~L~~-ld--~n-----ks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
+||++||+.|+|+|+|+|++||++||+.|++ +| +| ||++|+|+++|||||++||+|+.+|+|||+||
T Consensus 65 ~Av~~v~~~i~~~LiG~d~~dq~~iD~~l~~~ldgt~n~~~~~ks~lGanailavS~A~a~AaA~~~~~PLy~yL 139 (439)
T PTZ00081 65 KAVENVNEIIAPALIGKDVTDQKKLDKLMVEQLDGTKNEWGWCKSKLGANAILAVSMAVARAAAAAKGVPLYKYL 139 (439)
T ss_pred HHHHHHHHHHHHHHcCCChhhHHHHHHHHHHhccCCcccccccccccchHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 7999999999999999999999999999999 99 88 99999999999999999999999999999996
No 7
>PTZ00378 hypothetical protein; Provisional
Probab=99.86 E-value=2.3e-22 Score=151.44 Aligned_cols=62 Identities=18% Similarity=0.252 Sum_probs=59.8
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHhhc--cCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 7 LESEISEAIMGFSSNEQFFLDYTLTNLS--KNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 7 in~~i~p~L~g~~~~~q~~iD~~L~~ld--~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
|++.|+|+|+|++++||++||+.|+++| +|||++|+|+++|||||++||+|...++|||+||
T Consensus 111 v~~~i~p~Lig~~~~dQ~~iD~~Li~lDGT~nks~lGaNailavS~A~akAAA~~~~~PLy~yL 174 (518)
T PTZ00378 111 LQNSYFPRLLQLGARDQREFDSTLRAALSTSPLANVGSAVQWALSIVASLAAARCRSVPLFQYL 174 (518)
T ss_pred HHhhhHHHHcCCChHhHHHHHHHHHHhcCCCcccchhhHHHHHHHHHHHHHHHHHcCCCHHHHh
Confidence 3378999999999999999999999999 9999999999999999999999999999999996
No 8
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=99.85 E-value=2.1e-21 Score=141.99 Aligned_cols=67 Identities=42% Similarity=0.609 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHHHHcCCChhhHHHHHHHHHhhc--cCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 2 NADILLESEISEAIMGFSSNEQFFLDYTLTNLS--KNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 2 ~Av~~in~~i~p~L~g~~~~~q~~iD~~L~~ld--~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
+||.+|++.|+|.|+|+|+.||++||+.|+++| +||+++|+||++|||||++||+|+.+|+||||||
T Consensus 61 ~av~~i~~~iap~LiG~d~~dq~~id~~l~~~dgt~~~~~~G~nAi~avsiAl~da~A~~~g~PLy~~L 129 (408)
T cd03313 61 KAVKNVNEIIAPALIGMDVTDQRAIDKLLIELDGTPNKSKLGANAILGVSLAVAKAAAAALGLPLYRYL 129 (408)
T ss_pred HHHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCcccccchHHHHHHHHHHHHHHHHHcCCcHHHHh
Confidence 689999999999999999999999999999999 8999999999999999999999999999999996
No 9
>PRK00077 eno enolase; Provisional
Probab=99.83 E-value=1.3e-20 Score=138.47 Aligned_cols=67 Identities=42% Similarity=0.650 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHHHHcCCChhhHHHHHHHHHhhc--cCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 2 NADILLESEISEAIMGFSSNEQFFLDYTLTNLS--KNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 2 ~Av~~in~~i~p~L~g~~~~~q~~iD~~L~~ld--~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
+||.+|++.|+|.|+|+|+.||++||+.|.++| +|++++|+||++|||||++|++|+..|+|||+||
T Consensus 66 ~av~~v~~~iap~LiG~d~~d~~~id~~l~~ldgt~~~~~~G~nAi~avsiAl~da~ak~~g~PLy~lL 134 (425)
T PRK00077 66 KAVENVNEEIAPALIGLDALDQRAIDKAMIELDGTPNKSKLGANAILGVSLAVAKAAADSLGLPLYRYL 134 (425)
T ss_pred HHHHHHHHHHHHHHcCCChhhHHHHHHHHHHhhCccccCccchHHHHHHHHHHHHHHHHHhCCcHHHHh
Confidence 689999999999999999999999999999999 8999999999999999999999999999999986
No 10
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=99.81 E-value=4.9e-20 Score=135.38 Aligned_cols=67 Identities=40% Similarity=0.597 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHHHHcCCChhhHHHHHHHHHhhc--cCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 2 NADILLESEISEAIMGFSSNEQFFLDYTLTNLS--KNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 2 ~Av~~in~~i~p~L~g~~~~~q~~iD~~L~~ld--~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
+||.+|++.|+|.|+|+|+.||+.||+.|.++| +|++++|+||++|||||++|++|+..|+|||+||
T Consensus 63 ~av~~i~~~iap~LiG~d~~d~~~id~~l~~~d~t~~~~~~G~nAi~avs~Al~da~ak~~g~Ply~lL 131 (425)
T TIGR01060 63 KAVENVNDIIAPALIGMDAFDQREIDQIMIELDGTPNKSKLGANAILGVSMAVAKAAAKSLGLPLYRYL 131 (425)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHhCCcHHHHh
Confidence 689999999999999999999999999999998 8999999999999999999999999999999986
No 11
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=98.83 E-value=9.5e-09 Score=73.31 Aligned_cols=66 Identities=14% Similarity=0.203 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHcCCChhhHHHHHHHHHhhc--cCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 3 ADILLESEISEAIMGFSSNEQFFLDYTLTNLS--KNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 3 Av~~in~~i~p~L~g~~~~~q~~iD~~L~~ld--~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
++..+++.++|.|+|+|+.+.+.+.+.|.... ...+.+...|+.|++||+.++.++..|+|+|++|
T Consensus 34 ~~~~i~~~l~p~liG~dp~~~~~~~~~l~~~~~~~~~~~~~~~a~said~AlwDl~gK~~g~Pv~~LL 101 (341)
T cd03327 34 ACWIVDQHLARFLIGKDPSDIEKLWDQMYRATLAYGRKGIAMAAISAVDLALWDLLGKIRGEPVYKLL 101 (341)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHhhccccCCccHHHhHHHHHHHHHHHhcccccCCCHHHHc
Confidence 34567788999999999999999999987654 2223344569999999999999999999999975
No 12
>PF02746 MR_MLE_N: Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; InterPro: IPR013341 Mandelate racemase 5.1.2.2 from EC (MR) and muconate lactonizing enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the N-terminal region of these proteins.; PDB: 2OX4_F 3T9P_A 2QQ6_A 3CYJ_C 3GY1_A 3S47_B 3RRA_B 3RR1_A 3STP_A 3T8Q_A ....
Probab=98.79 E-value=1.2e-08 Score=62.78 Aligned_cols=60 Identities=18% Similarity=0.201 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHhhc-cCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 4 DILLESEISEAIMGFSSNEQFFLDYTLTNLS-KNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 4 v~~in~~i~p~L~g~~~~~q~~iD~~L~~ld-~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
...+.+.+.|.++|+++.+.+.+.+.+...- . ..-|+.|+++|+.++.|+..|+|||++|
T Consensus 56 ~~~~~~~l~~~l~g~~~~~~~~~~~~~~~~~~~-----~~~a~aaid~AlwDl~gK~~g~Pl~~Ll 116 (117)
T PF02746_consen 56 ASALEDYLAPLLIGQDPDDIEDIWQELYRLIKG-----NPAAKAAIDMALWDLLGKIAGQPLYQLL 116 (117)
T ss_dssp HHHHHHTHHHHHTTSBTTGHHHHHHHHHHHTSS-----HHHHHHHHHHHHHHHHHHHHTSBHHHHT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccc-----hHHHHHHHHHHHHHHHHHHcCCCHHHHc
Confidence 4567778999999999999999988776654 4 3349999999999999999999999975
No 13
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=98.56 E-value=2.1e-07 Score=68.36 Aligned_cols=64 Identities=17% Similarity=0.319 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHhhc--cCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 5 ILLESEISEAIMGFSSNEQFFLDYTLTNLS--KNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 5 ~~in~~i~p~L~g~~~~~q~~iD~~L~~ld--~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
..+++.++|.|+|+|+.+.+.+-+.|...- .....+..+|+.|++||+.++.++..|+|+|++|
T Consensus 83 ~~v~~~l~p~LiG~dp~~~e~l~~~m~~~~~~~g~~g~~~~A~saIDiALwDl~gK~~g~Pv~~LL 148 (394)
T PRK15440 83 FIVEKHLNRFIEGKCVSDIELIWDQMLNATLYYGRKGLVMNTISCVDLALWDLLGKVRGLPVYKLL 148 (394)
T ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHhhccccCCccHhhhHHHHHHHHHHHHhhhHcCCcHHHHc
Confidence 457788999999999999999988886542 1112233579999999999999999999999975
No 14
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=98.54 E-value=2.3e-07 Score=67.92 Aligned_cols=65 Identities=14% Similarity=0.070 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHhhccCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 4 DILLESEISEAIMGFSSNEQFFLDYTLTNLSKNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 4 v~~in~~i~p~L~g~~~~~q~~iD~~L~~ld~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
...|++.++|.|+|+|+.|.+.+.+.|...-.........++.|+++|+.++.++..|+|||++|
T Consensus 52 ~~~i~~~lap~LiG~d~~~i~~i~~~m~~~~~~g~~~~~aaksAIDiALwDl~gK~~g~Pv~~LL 116 (369)
T cd03314 52 IPVIEKVIAPALVGRDVANFRPAAAVLDKMRLDGNRLHTAIRYGVSQALLDAVALAQRRTMAEVL 116 (369)
T ss_pred HHHHHHhhhhHhcCCCHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHHHHHHhCCcHHHHc
Confidence 34678889999999999999999888865421000111236789999999999999999999875
No 15
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=98.52 E-value=2.5e-07 Score=68.55 Aligned_cols=64 Identities=14% Similarity=0.156 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHhhccCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 4 DILLESEISEAIMGFSSNEQFFLDYTLTNLSKNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 4 v~~in~~i~p~L~g~~~~~q~~iD~~L~~ld~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
+..|++.++|.|+|+|+++.+++-+.|.....+.. +-.-++.||++|+.++.|+..|+|+|+.|
T Consensus 89 ~~~i~~~laP~LiG~d~~~~~~l~~~~~~~~~~~~-~~~a~kaavd~AL~D~~ak~~g~pl~~LL 152 (408)
T TIGR01502 89 IPVIEKEVAPKLIGRDITNFKDMAEVFEKMTVNRN-LHTAIRYGVSQALLDAAAKTRKTTMAEVI 152 (408)
T ss_pred HHHHHHHhhHHHcCCCccCHHHHHHHHHHHhhcCc-chhHHHHHHHHHHHHHHHHHcCCcHHHHh
Confidence 46788889999999999999999888887641111 22335699999999999999999999865
No 16
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=98.52 E-value=2.7e-07 Score=65.72 Aligned_cols=60 Identities=15% Similarity=0.154 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHhhccCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 4 DILLESEISEAIMGFSSNEQFFLDYTLTNLSKNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 4 v~~in~~i~p~L~g~~~~~q~~iD~~L~~ld~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
+..+++.+.|.|+|+++.+.+++.+.|..+..+ ..++.|+++|+.++.++..|+|+|+.|
T Consensus 60 ~~~i~~~~~p~l~g~~~~~~~~~~~~~~~~~~~-----~~a~aaid~AlwDl~gk~~g~Pv~~LL 119 (354)
T cd03317 60 WHILKDYLLPLLLGREFSHPEEVSERLAPIKGN-----NMAKAGLEMAVWDLYAKAQGQSLAQYL 119 (354)
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHhcCC-----hHHHHHHHHHHHHHHHHHcCCCHHHHh
Confidence 556788899999999999999998888764332 238999999999999999999999865
No 17
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=98.52 E-value=3.1e-07 Score=65.98 Aligned_cols=64 Identities=19% Similarity=0.227 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHhhc-cC-cchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 5 ILLESEISEAIMGFSSNEQFFLDYTLTNLS-KN-KSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 5 ~~in~~i~p~L~g~~~~~q~~iD~~L~~ld-~n-ks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
..+++.++|.|+|+|+.+.+.+-+.|.... .+ .+.....|+.|++||+.+..++..|+|+|++|
T Consensus 54 ~~i~~~~~p~liG~d~~~~~~l~~~~~~~~~~~~~~g~~~~a~aaiD~AlwDl~gK~~g~Pv~~LL 119 (352)
T cd03328 54 ALVDGLLAPVVEGRDALDPPAAWEAMQRAVRNAGRPGVAAMAISAVDIALWDLKARLLGLPLARLL 119 (352)
T ss_pred HHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHhhhhcCCcHHHHh
Confidence 457778999999999999999988886643 11 12223468999999999999999999999875
No 18
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=98.44 E-value=7.7e-07 Score=65.03 Aligned_cols=64 Identities=16% Similarity=0.243 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHhhc-cCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 5 ILLESEISEAIMGFSSNEQFFLDYTLTNLS-KNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 5 ~~in~~i~p~L~g~~~~~q~~iD~~L~~ld-~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
..+.+.++|.|+|+|+.+.+.+-+.|...- -........++.|+++|+.++.++..|+|||++|
T Consensus 45 ~~~~~~l~p~l~G~d~~~~e~~~~~l~~~~~~~~~~~~~~a~aaID~AlwDl~gK~~g~Pl~~LL 109 (404)
T PRK15072 45 SYLQDHVCPLLIGRDAHRIEDIWQYLYRGAYWRRGPVTMSAIAAVDMALWDIKAKAAGMPLYQLL 109 (404)
T ss_pred HHHHHHHHHHcCCCChhHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHhhhhcCCcHHHHc
Confidence 346678999999999999999988886532 1112233458999999999999999999999875
No 19
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=98.42 E-value=6.1e-07 Score=64.56 Aligned_cols=62 Identities=23% Similarity=0.287 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHhhccCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 4 DILLESEISEAIMGFSSNEQFFLDYTLTNLSKNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 4 v~~in~~i~p~L~g~~~~~q~~iD~~L~~ld~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
...+.+.++|.|+|+|+.+.+++-+.|..... .....|+.|++||+.+..++..|+|||+.|
T Consensus 58 ~~~~~~~l~p~liG~d~~~~~~~~~~~~~~~~---~~~~~A~said~AlwDl~gk~~g~Pl~~LL 119 (368)
T cd03329 58 PALVDRFLKKVLIGQDPLDRERLWQDLWRLQR---GLTDRGLGLVDIALWDLAGKYLGLPVHRLL 119 (368)
T ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHhc---CcchhHHHHHHHHHHHHhhhhcCCcHHHHh
Confidence 34577889999999999999999888766431 123358999999999999999999999865
No 20
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=98.42 E-value=9.6e-07 Score=63.57 Aligned_cols=64 Identities=19% Similarity=0.264 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHhhc-cCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 5 ILLESEISEAIMGFSSNEQFFLDYTLTNLS-KNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 5 ~~in~~i~p~L~g~~~~~q~~iD~~L~~ld-~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
..+++.++|.|+|+|+.+.+.+-+.|.... .........++.|+++|+.++.++..|+|||+.|
T Consensus 44 ~~i~~~l~p~l~G~d~~~~~~~~~~~~~~~~~~~~~~~~~a~aaid~AlwDl~gk~~g~Pl~~LL 108 (361)
T cd03322 44 AYLREHLKPLLIGRDANRIEDIWQYLYRGAYWRRGPVTMNAIAAVDMALWDIKGKAAGMPLYQLL 108 (361)
T ss_pred HHHHHHHHHHcCCCChhHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHhHhhcCCcHHHHc
Confidence 457778999999999999999988886532 0001122348999999999999999999999875
No 21
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=98.35 E-value=1.2e-06 Score=62.13 Aligned_cols=65 Identities=17% Similarity=0.186 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHhhc-cCc-chhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 4 DILLESEISEAIMGFSSNEQFFLDYTLTNLS-KNK-SQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 4 v~~in~~i~p~L~g~~~~~q~~iD~~L~~ld-~nk-s~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
...+++.++|.|+|+++.+.+++.+.|.... .+. +..-..++.|+++|+.++.++..|+|+|+.|
T Consensus 53 ~~~l~~~~~p~l~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~aid~Al~Dl~gk~~g~pl~~ll 119 (357)
T cd03316 53 AAAIEDLLAPLLIGRDPLDIERLWEKLYRRLFWRGRGGVAMAAISAVDIALWDIKGKAAGVPVYKLL 119 (357)
T ss_pred HHHHHHHHHHHccCCChHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHhcccccCCcHhhcc
Confidence 3456777999999999999999988876653 221 1112458999999999999999999999875
No 22
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=98.30 E-value=2.3e-06 Score=61.28 Aligned_cols=60 Identities=17% Similarity=0.230 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHhhc-cCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 4 DILLESEISEAIMGFSSNEQFFLDYTLTNLS-KNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 4 v~~in~~i~p~L~g~~~~~q~~iD~~L~~ld-~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
+..+++.+.|.|+|+|+.+.+.+-+.|.... .+. .++.|+++|+.++.++..|+|+|+.|
T Consensus 64 ~~~l~~~~~~~l~G~~~~~~~~~~~~l~~~~~~~~-----~a~said~AlwDl~gK~~g~Pl~~LL 124 (365)
T cd03318 64 KAIIDRYLAPLLIGRDATNIGAAMALLDRAVAGNL-----FAKAAIEMALLDAQGRRLGLPVSELL 124 (365)
T ss_pred HHHHHHhhHHHHcCCChHHHHHHHHHHHHHhcCCc-----cHHHHHHHHHHHHHHhHcCCCHHHHc
Confidence 4567778999999999999888877665532 332 38999999999999999999999864
No 23
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=98.26 E-value=2.9e-06 Score=62.05 Aligned_cols=62 Identities=18% Similarity=0.187 Sum_probs=47.0
Q ss_pred HHHHHHHHHHcCCChhhH----------HHHHHHHHhhc--cCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 6 LLESEISEAIMGFSSNEQ----------FFLDYTLTNLS--KNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 6 ~in~~i~p~L~g~~~~~q----------~~iD~~L~~ld--~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
.|++.++|.|+|+|+.+. +.+=+.|.... .+. .....|+.|++||+.++.++..|+|+|+.|
T Consensus 60 ~i~~~~~p~LiG~dp~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~A~saID~ALwDl~gK~~g~Pv~~LL 133 (385)
T cd03326 60 LLRERFIPRLLAAAPDSLLDDAGGNLDPARAWAAMMRNEKPGGH-GERAVAVGALDMAVWDAVAKIAGLPLYRLL 133 (385)
T ss_pred HHHHHHHHHhcCCChHHhhhcccccCCHHHHHHHHHhcCccCCC-CHHHHHHHHHHHHHHHHhHHHcCCcHHHHc
Confidence 378889999999999966 66655554321 111 123458999999999999999999999865
No 24
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=98.25 E-value=3.4e-06 Score=60.61 Aligned_cols=60 Identities=18% Similarity=0.296 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHhhc-cCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 4 DILLESEISEAIMGFSSNEQFFLDYTLTNLS-KNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 4 v~~in~~i~p~L~g~~~~~q~~iD~~L~~ld-~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
...+++.+.|.|+|+|+.+.+.+-+.|...- .+.. ++.||++|+.++.++..|+|+|+.|
T Consensus 63 ~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~-----a~said~AlwDl~gK~~g~Pv~~LL 123 (368)
T TIGR02534 63 KANIDTYLAPVLVGRDATEIAAIMADLEKVVAGNRF-----AKAAVDTALHDAQARRLGVPVSELL 123 (368)
T ss_pred HHHHHHhhHHHHcCCChhhHHHHHHHHHHHhcCCch-----HHHHHHHHHHHHHHHHcCCcHHHHh
Confidence 3457778999999999988877766665532 2222 8999999999999999999999865
No 25
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=98.24 E-value=3.9e-06 Score=60.19 Aligned_cols=62 Identities=10% Similarity=0.143 Sum_probs=47.5
Q ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHhhc-cCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 6 LLESEISEAIMGFSSNEQFFLDYTLTNLS-KNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 6 ~in~~i~p~L~g~~~~~q~~iD~~L~~ld-~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
.++. ++|.|+|+|+.+.+.+-+.|.... .........++.|+++|+.++.++..|+|+|+.|
T Consensus 43 ~~~~-l~p~l~G~d~~~~~~~~~~~~~~~~~~~~~~~~~a~aaid~Al~Dl~gk~~g~pv~~LL 105 (352)
T cd03325 43 AVQE-LEDYLIGKDPMNIEHHWQVMYRGGFYRGGPVLMSAISGIDQALWDIKGKVLGVPVHQLL 105 (352)
T ss_pred HHHH-HHHHhCCCCHHHHHHHHHHHHHhcCcCCcchhhhHHHHHHHHHHHHhhhhcCCcHHHHc
Confidence 3454 999999999999998877774421 1111122458999999999999999999999865
No 26
>PRK14017 galactonate dehydratase; Provisional
Probab=98.18 E-value=6.9e-06 Score=59.48 Aligned_cols=60 Identities=12% Similarity=0.159 Sum_probs=46.7
Q ss_pred HHHHHHHcCCChhhHHHHHHHHHhhc-cCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 9 SEISEAIMGFSSNEQFFLDYTLTNLS-KNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 9 ~~i~p~L~g~~~~~q~~iD~~L~~ld-~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
+.++|.|+|+|+.+.+.+-+.|.... .........|+.|++||+.++.++..|+|+|++|
T Consensus 46 ~~~~p~l~G~d~~~~~~~~~~l~~~~~~~~~~~~~~A~aaid~AlwDl~gK~~g~Pv~~LL 106 (382)
T PRK14017 46 HELADYLIGKDPRRIEDHWQVMYRGGFYRGGPILMSAIAGIDQALWDIKGKALGVPVHELL 106 (382)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhcccCCchHHhhHHHHHHHHHHHHhhhhcCCcHHHHc
Confidence 36899999999999999888875421 0111112348999999999999999999999875
No 27
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=98.14 E-value=8.1e-06 Score=60.35 Aligned_cols=62 Identities=13% Similarity=0.066 Sum_probs=45.2
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHhhc-cC------c--chhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 7 LESEISEAIMGFSSNEQFFLDYTLTNLS-KN------K--SQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 7 in~~i~p~L~g~~~~~q~~iD~~L~~ld-~n------k--s~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
+.+.++|.|+|+|+.+.+.+-+.|.... .+ . ......|+.|++||+.+..++..|+|+|+.|
T Consensus 64 ~~~~lap~liG~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~saiD~AlwDl~gK~~g~Pv~~LL 134 (415)
T cd03324 64 AIEALAHLVVGRDLESIVADMGKFWRRLTSDSQLRWIGPEKGVIHLATAAVVNAVWDLWAKAEGKPLWKLL 134 (415)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhccccceecCCcccHHHHHHHHHHHHHHHHhhhhcCCcHHHHh
Confidence 4457999999999999855544443322 11 0 1112369999999999999999999999865
No 28
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=98.12 E-value=9.8e-06 Score=58.10 Aligned_cols=61 Identities=18% Similarity=0.235 Sum_probs=45.2
Q ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHhhc---cCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 6 LLESEISEAIMGFSSNEQFFLDYTLTNLS---KNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 6 ~in~~i~p~L~g~~~~~q~~iD~~L~~ld---~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
.+.+.++|.|+|+++ +.+.+.+.+...- .+ ..+...|+.|+++|+.++.++..|+|+|++|
T Consensus 61 ~~~~~l~p~LiG~~~-~~~~~~~~~~~~~~~~~~-~~~~~~a~aaid~AlwDl~gk~~g~Pv~~Ll 124 (355)
T cd03321 61 QLLDDMAALLVGEPL-APAELERALAKRFRLLGY-TGLVRMAAAGIDMAAWDALAKVHGLPLAKLL 124 (355)
T ss_pred HHHHHHHHHhCCCCC-ChHHHHHHHHHHHHhhcC-CcHHHHHHHHHHHHHHHHHHHHcCCcHHHHh
Confidence 344569999999986 5666666655432 22 1123458999999999999999999999875
No 29
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=98.07 E-value=1e-05 Score=60.28 Aligned_cols=61 Identities=15% Similarity=0.198 Sum_probs=47.3
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHhhc-c----Ccc------hhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 7 LESEISEAIMGFSSNEQFFLDYTLTNLS-K----NKS------QFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 7 in~~i~p~L~g~~~~~q~~iD~~L~~ld-~----nks------~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
++ .++|.|+|+|+.+.+.+-+.|...- . ..+ +...-|+.|++||+.++.++..|+|||+.|
T Consensus 61 l~-~lap~LiG~dp~~~e~i~~~m~~~~~~~~~~~~g~~~~~~~~~~~A~aAIDiALWDl~gK~~g~Pl~~LL 132 (441)
T TIGR03247 61 LE-DARPLVVGKPLGEYQNVLNDVRATFADRDAGGRGLQTFDLRTTIHAVTAIESALLDLLGQHLGVPVAALL 132 (441)
T ss_pred HH-HHHHHhcCCCHHHHHHHHHHHHHHhhcccccccCcccccchhHHHHHHHHHHHHHHHhhhHcCCCHHHHh
Confidence 44 6899999999999999988775431 0 001 012348999999999999999999999875
No 30
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=98.04 E-value=1.2e-05 Score=57.20 Aligned_cols=59 Identities=10% Similarity=-0.077 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHhhccCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 4 DILLESEISEAIMGFSSNEQFFLDYTLTNLSKNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 4 v~~in~~i~p~L~g~~~~~q~~iD~~L~~ld~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
...+++.+.|.|+| ++.+.+++-+.|..... +..++.|+++|+.++.++..|+|+|+.|
T Consensus 57 ~~~i~~~~~~~l~g-~~~~~~~~~~~~~~~~~-----~~~a~said~AlwDl~gk~~g~Pl~~ll 115 (324)
T TIGR01928 57 KHIIEDFFEPNINK-EFEHPSEALELVRSLKG-----TPMAKAGLEMALWDMYHKLPSFSLAYGQ 115 (324)
T ss_pred HHHHHHHHHHHhcC-CCCCHHHHHHHHHHccC-----CcHHHHHHHHHHHHHHHhhhCCcHHHHh
Confidence 45677788999999 99998888877754322 2238999999999999999999999864
No 31
>COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]
Probab=97.97 E-value=2e-05 Score=56.66 Aligned_cols=59 Identities=17% Similarity=0.274 Sum_probs=47.9
Q ss_pred HHHHHHcCCChhhHHHHHHHHHhhc-cCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 10 EISEAIMGFSSNEQFFLDYTLTNLS-KNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 10 ~i~p~L~g~~~~~q~~iD~~L~~ld-~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
.+++.++|.++.+.+.+.+.|.... .+...+.-.++.||++|+.+..|+..|+|||+.|
T Consensus 64 ~~~~~l~g~d~~~i~~~~~~~~~~~~~~~~~~~~~a~sAvd~ALwDl~gK~~g~Pv~~LL 123 (372)
T COG4948 64 LLAPLLIGRDPFDIERIWQKLYRAGFARRGGITMAAISAVDIALWDLAGKALGVPVYKLL 123 (372)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHhHcCCcHHHHc
Confidence 5899999999999999666666544 3323333479999999999999999999999975
No 32
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=97.92 E-value=3.6e-05 Score=54.12 Aligned_cols=57 Identities=30% Similarity=0.280 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHhhccCcchhhHHHHHHHHHHHHHHHhhhhCCCcccc
Q psy15211 5 ILLESEISEAIMGFSSNEQFFLDYTLTNLSKNKSQFIKNALLSVSIAIAKASSNELGLPLYRY 67 (68)
Q Consensus 5 ~~in~~i~p~L~g~~~~~q~~iD~~L~~ld~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~ 67 (68)
..++. +.|.|+|.|+. .+.+-+.|..... -+..++.|+++|+.++.++..|+|+|+.
T Consensus 59 ~~~~~-~~~~l~G~~~~-~~~~~~~l~~~~~----~~~~a~~aid~AlwDl~gk~~g~pv~~l 115 (316)
T cd03319 59 AALKS-VRPALIGGDPR-LEKLLEALQELLP----GNGAARAAVDIALWDLEAKLLGLPLYQL 115 (316)
T ss_pred HHHHH-HHHHhcCCCch-HHHHHHHHHHhcc----CChHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 34555 59999999998 8877777755421 1233899999999999999999999986
No 33
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=97.41 E-value=0.00046 Score=50.60 Aligned_cols=65 Identities=12% Similarity=0.140 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHcCCCh-hhHHHHHHHHHhhc--cCcch---------hhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 3 ADILLESEISEAIMGFSS-NEQFFLDYTLTNLS--KNKSQ---------FIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 3 Av~~in~~i~p~L~g~~~-~~q~~iD~~L~~ld--~nks~---------lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
++..+. .+.|.|+|.++ .+.+.+-+.|...- ...++ +-..|+.||++|+.+..++..|+|+|+.|
T Consensus 53 ~~~~~~-~~~~~llg~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~saiD~ALwDl~gK~~g~Pl~~LL 129 (395)
T cd03323 53 ALEALL-EAARSLVGGDVFGAYLAVLESVRVAFADRDAGGRGLQTFDLRTTVHVVTAFEVALLDLLGQALGVPVADLL 129 (395)
T ss_pred HHHHHH-HHhHHHhCCCcchhhHHHHHHHHHHHhcccccccCccccchhHHHHHHHHHHHHHHHHhhhhcCCCHHHHh
Confidence 344554 57889999887 34444333443321 22221 12568999999999999999999999865
No 34
>PF05034 MAAL_N: Methylaspartate ammonia-lyase N-terminus; InterPro: IPR022665 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the N-terminal region of methylaspartate ammonia-lyase. This domain is structurally related to PF03952 from PFAM []. This domain is associated with the catalytic domain PF07476 from PFAM. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=96.87 E-value=0.0033 Score=41.98 Aligned_cols=58 Identities=14% Similarity=0.088 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHhhccCcchhhHHHHHHHHHHHHHHHhhhhCC
Q psy15211 4 DILLESEISEAIMGFSSNEQFFLDYTLTNLSKNKSQFIKNALLSVSIAIAKASSNELGL 62 (68)
Q Consensus 4 v~~in~~i~p~L~g~~~~~q~~iD~~L~~ld~nks~lGana~~AvSiA~~~a~A~~~~~ 62 (68)
+..|++.|+|.|+|+|++..++.=..+.++ .+-.++..-.--+||.|+.+|.|+..+.
T Consensus 90 ip~ie~~v~p~L~g~d~~~Fr~~a~~~d~~-~~g~rlhtAiRYGvsQALL~A~A~a~~~ 147 (159)
T PF05034_consen 90 IPVIEKEVAPRLVGRDLSSFRENAEKFDEL-VDGKRLHTAIRYGVSQALLDAAAKAQRT 147 (159)
T ss_dssp HHHHHHHTHHHHTT-B-S-CHHHHHHHHH--ETTEE--HHHHHHHHHHHHHHHHHHCTS
T ss_pred HHHHHhhccHHHcCCcHHHHHHHHHHHHhc-ccCCcchhHHHHhHHHHHHHHHHHHcCC
Confidence 456889999999999999888777766666 3445677777789999999999998775
No 35
>PRK15129 L-Ala-D/L-Glu epimerase; Provisional
Probab=95.73 E-value=0.023 Score=40.43 Aligned_cols=52 Identities=15% Similarity=0.103 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHc-CCChhhHHHHHHHHHhhccCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 4 DILLESEISEAIM-GFSSNEQFFLDYTLTNLSKNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 4 v~~in~~i~p~L~-g~~~~~q~~iD~~L~~ld~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
...+. .+.|.|+ |.+. +.+++.+ .+.+ ++.|+++|+.++.++..|+|+|+.|
T Consensus 59 ~~~l~-~~~~~l~~~~~~---~~~~~~~----~~~~-----a~~aid~AlwDl~gk~~~~pl~~ll 111 (321)
T PRK15129 59 MAQIM-SVVPQLEKGLTR---EALQKLL----PAGA-----ARNAVDCALWDLAARQQQQSLAQLI 111 (321)
T ss_pred HHHHH-HHHHHHhCCCCH---HHHHhhc----cChH-----HHHHHHHHHHHHHHHHcCCcHHHHc
Confidence 34453 5788887 4332 3333321 2223 8999999999999999999999864
No 36
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=94.57 E-value=0.023 Score=38.26 Aligned_cols=25 Identities=20% Similarity=0.484 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 44 ALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 44 a~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
++.|+++|+.++.++..|+|+|+++
T Consensus 43 ~~~aid~Al~Dl~gk~~~~pl~~ll 67 (229)
T cd00308 43 VISGIDMALWDLAAKALGVPLAELL 67 (229)
T ss_pred HHHHHHHHHHHHhHhHcCCcHHHHc
Confidence 4899999999999999999999864
No 37
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=94.21 E-value=0.057 Score=46.07 Aligned_cols=53 Identities=17% Similarity=0.161 Sum_probs=35.7
Q ss_pred HHHHHHcCCChhhHHHHHHHHHhhccCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 10 EISEAIMGFSSNEQFFLDYTLTNLSKNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 10 ~i~p~L~g~~~~~q~~iD~~L~~ld~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
.+.|.|+|++.. .+...|. . . .+.....++.|++||+.++.++..|+|+|++|
T Consensus 1011 ~l~p~l~G~~~~---~~~~~l~-~-~-~~~~~psa~~ald~ALwDl~gk~~g~Pl~~LL 1063 (1655)
T PLN02980 1011 FMLPLLKGSFSS---WIWSELG-I-P-PSSIFPSVRCGLEMAILNAIAVRHGSSLLNIL 1063 (1655)
T ss_pred hhhHhhcCcchH---HHHHHhh-c-c-ccccchHHHHHHHHHHHHHHHHHcCCcHHHHh
Confidence 457889998542 1112221 1 1 11233449999999999999999999999864
No 38
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=90.83 E-value=0.18 Score=34.55 Aligned_cols=29 Identities=21% Similarity=0.437 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 40 FIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 40 lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
.|.-++.|+++|+.++.++..|+|+|+.+
T Consensus 40 ~GE~~~~aid~Al~Dl~gk~~g~pv~~ll 68 (265)
T cd03315 40 WAEATKAAVDMALWDLWGKRLGVPVYLLL 68 (265)
T ss_pred EeccHHHHHHHHHHHHHHHHcCCcHHHHc
Confidence 34444899999999999999999998753
No 39
>COG3799 Mal Methylaspartate ammonia-lyase [Amino acid transport and metabolism]
Probab=72.67 E-value=11 Score=28.22 Aligned_cols=55 Identities=15% Similarity=0.150 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHhh-ccCcchhhHHHHHHHHHHHHHHHhhhhC
Q psy15211 5 ILLESEISEAIMGFSSNEQFFLDYTLTNL-SKNKSQFIKNALLSVSIAIAKASSNELG 61 (68)
Q Consensus 5 ~~in~~i~p~L~g~~~~~q~~iD~~L~~l-d~nks~lGana~~AvSiA~~~a~A~~~~ 61 (68)
..+|..+.|.|+|.|+.-.-.--+....+ |+ ..+---.-.+||.|+.+|+|...+
T Consensus 91 ~~~~~~v~p~LvgrDv~~~ldnA~vfe~l~d~--~~LhtAvrYGvSQALl~Aaa~a~~ 146 (410)
T COG3799 91 PFLNDHVKPLLVGRDVDAFLDNARVFEKLIDG--NLLHTAVRYGVSQALLDAAALATG 146 (410)
T ss_pred HHHhhhhhhhhhCccHHhhcchhHHhHhhccC--CcchHHHHhhHHHHHHHHHHHhhc
Confidence 45788999999999975432211222222 22 222333557899999999887654
No 40
>PRK05105 O-succinylbenzoate synthase; Provisional
Probab=71.39 E-value=9.1 Score=27.31 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHhhhhCCCccc
Q psy15211 44 ALLSVSIAIAKASSNELGLPLYR 66 (68)
Q Consensus 44 a~~AvSiA~~~a~A~~~~~PLy~ 66 (68)
+..++++|+++..++..+.|+|+
T Consensus 85 a~~~i~~Al~dl~gk~~~~~~~~ 107 (322)
T PRK05105 85 VAFGLSCALAELAGTLPQAANYR 107 (322)
T ss_pred HHHHHHHHHHHhcCCCCCCCCcc
Confidence 77899999999999999999885
No 41
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=57.69 E-value=24 Score=21.39 Aligned_cols=49 Identities=18% Similarity=0.268 Sum_probs=28.8
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHhhccCcc-hh----hHHHHHHHHHHHHHHHh
Q psy15211 7 LESEISEAIMGFSSNEQFFLDYTLTNLSKNKS-QF----IKNALLSVSIAIAKASS 57 (68)
Q Consensus 7 in~~i~p~L~g~~~~~q~~iD~~L~~ld~nks-~l----Gana~~AvSiA~~~a~A 57 (68)
++..+.+-|. ...|+..+|++|..+|.|+. ++ =-.-+..+.+|+-+..-
T Consensus 33 l~~Elp~~l~--~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~~ac~~~~~ 86 (91)
T cd05024 33 MEKEFSEFLK--NQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLLIACNDYYV 86 (91)
T ss_pred HHHHhHHHHc--CCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443 35589999999999993221 11 11255667777766554
No 42
>PF11307 DUF3109: Protein of unknown function (DUF3109); InterPro: IPR021458 This bacterial family of proteins has no known function.
Probab=50.87 E-value=5.8 Score=27.16 Aligned_cols=14 Identities=36% Similarity=1.047 Sum_probs=9.5
Q ss_pred HHhhhhCCCccccC
Q psy15211 55 ASSNELGLPLYRYI 68 (68)
Q Consensus 55 a~A~~~~~PLy~~l 68 (68)
...+.+++|+|+||
T Consensus 151 ~~G~el~vpvy~Fl 164 (183)
T PF11307_consen 151 SLGKELGVPVYKFL 164 (183)
T ss_pred HhchhhCCcHHHHh
Confidence 45667777777764
No 43
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=50.67 E-value=0.44 Score=28.28 Aligned_cols=26 Identities=19% Similarity=0.141 Sum_probs=18.2
Q ss_pred HHHHHHHhhccCcchhhHHHHHHHHH
Q psy15211 25 FLDYTLTNLSKNKSQFIKNALLSVSI 50 (68)
Q Consensus 25 ~iD~~L~~ld~nks~lGana~~AvSi 50 (68)
..|+.+.++-+.-.++|+||++++.+
T Consensus 26 d~d~Al~eM~e~A~~lGAnAVVGvr~ 51 (74)
T TIGR03884 26 NVDEIVENLREKVKAKGGMGLIAFRI 51 (74)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEEEE
Confidence 45666666654456799999987654
No 44
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=47.65 E-value=27 Score=26.05 Aligned_cols=22 Identities=36% Similarity=0.323 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHhhhhCCCcc
Q psy15211 44 ALLSVSIAIAKASSNELGLPLY 65 (68)
Q Consensus 44 a~~AvSiA~~~a~A~~~~~PLy 65 (68)
-.+-|-..++|+.|..+++||+
T Consensus 85 gaL~VG~~~Ak~LA~a~~kPli 106 (342)
T COG0533 85 GALLVGATAAKALALALNKPLI 106 (342)
T ss_pred hHHHHHHHHHHHHHHHhCCCEe
Confidence 3456667889999999999987
No 45
>TIGR00228 ruvC crossover junction endodeoxyribonuclease RuvC. Endonuclease that resolves Holliday junction intermediates in genetic recombination. The active form of the protein is a dimer. Structure studies reveals that the catalytic center, comprised of four acidic residues, lies at the bottom of a cleft that fits a DNA duplex. The model hits a single Synechocystis PCC6803 protein at a score of 30, below the trusted cutoff, that appears orthologous and may act as authentic RuvC.
Probab=43.79 E-value=23 Score=23.37 Aligned_cols=28 Identities=25% Similarity=0.464 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHHHHH----HHhhhhCCCcccc
Q psy15211 40 FIKNALLSVSIAIAK----ASSNELGLPLYRY 67 (68)
Q Consensus 40 lGana~~AvSiA~~~----a~A~~~~~PLy~~ 67 (68)
++.|...+..++=++ .++...++|+|+|
T Consensus 68 ~~~N~~sa~~lg~arGvilla~~~~~ipv~Ey 99 (156)
T TIGR00228 68 MAKNADSALKLGQARGVAIVAAVNQELPVFEY 99 (156)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 355677676666555 6778999999987
No 46
>PF06545 DUF1116: Protein of unknown function (DUF1116); InterPro: IPR009499 This family contains hypothetical bacterial proteins of unknown function.; PDB: 3CLQ_A.
Probab=43.06 E-value=94 Score=21.79 Aligned_cols=48 Identities=23% Similarity=0.262 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHcC--CChhhHHHHHHHHHhhccCcchhhHHHHHHHHHHHHHHHhhhh
Q psy15211 5 ILLESEISEAIMG--FSSNEQFFLDYTLTNLSKNKSQFIKNALLSVSIAIAKASSNEL 60 (68)
Q Consensus 5 ~~in~~i~p~L~g--~~~~~q~~iD~~L~~ld~nks~lGana~~AvSiA~~~a~A~~~ 60 (68)
..+-..|.|.+.. .+..+..++.+.|.+-| . --+-++||.||+.....
T Consensus 108 ~ll~~~L~P~l~~~~~~~~~~~~v~~fl~~nd---~-----FFLnl~MAa~K~~~daa 157 (216)
T PF06545_consen 108 SLLLRELAPALVDTDFPKDDKAEVLEFLASND---H-----FFLNLSMAACKAMMDAA 157 (216)
T ss_dssp HHHHHHHHHHHHTSSS-HHHHHHHHHHHTS-T---T-----TTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccCCChHHHHHHHHHHhcCC---c-----eeehHHHHHHHHHHHHh
Confidence 3455679999994 44555666666666544 2 34578899999776554
No 47
>PF11293 DUF3094: Protein of unknown function (DUF3094); InterPro: IPR021444 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=41.18 E-value=27 Score=19.59 Aligned_cols=17 Identities=18% Similarity=0.081 Sum_probs=14.3
Q ss_pred CChhhHHHHHHHHHhhc
Q psy15211 18 FSSNEQFFLDYTLTNLS 34 (68)
Q Consensus 18 ~~~~~q~~iD~~L~~ld 34 (68)
+++.||+.+|+.|..--
T Consensus 4 L~pEDQ~~Vd~yL~a~~ 20 (55)
T PF11293_consen 4 LNPEDQQRVDEYLQAGV 20 (55)
T ss_pred CCHHHHHHHHHHHhCCC
Confidence 57899999999998653
No 48
>COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=39.88 E-value=23 Score=24.13 Aligned_cols=23 Identities=30% Similarity=0.418 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHhhhhCCCccc
Q psy15211 44 ALLSVSIAIAKASSNELGLPLYR 66 (68)
Q Consensus 44 a~~AvSiA~~~a~A~~~~~PLy~ 66 (68)
+-+=|+++++|..|-.+++|+|-
T Consensus 72 TGlRIG~~~AkgLA~~l~iplvg 94 (220)
T COG1214 72 TGLRIGVAFAKGLALALNIPLVG 94 (220)
T ss_pred cchhhHHHHHHHHHHHcCCCEEE
Confidence 44557889999999999999974
No 49
>PF09715 Plasmod_dom_1: Plasmodium protein of unknown function (Plasmod_dom_1); InterPro: IPR006410 These sequences represent an uncharacterised family consisting of a small number of hypothetical proteins of the malaria parasite Plasmodium falciparum (isolate 3D7).
Probab=38.67 E-value=25 Score=20.46 Aligned_cols=50 Identities=26% Similarity=0.462 Sum_probs=30.0
Q ss_pred ChhhHHHHHHHHHhhccCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 19 SSNEQFFLDYTLTNLSKNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 19 ~~~~q~~iD~~L~~ld~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
+..|---||+.+..--.||+.--.--+..-+++.+.|+.--.++|-|.||
T Consensus 11 ~~fDnifidklId~~i~nk~s~~~e~v~~n~l~~~~a~~p~~~i~~~~Yi 60 (67)
T PF09715_consen 11 DIFDNIFIDKLIDNNIQNKSSFIPEDVPENSLSLMTAAIPFFAIPIFPYI 60 (67)
T ss_pred HHHHHHHHHHHHccccccCCCCcHHHhHHHHHHHHHHhccchhhHHHHHH
Confidence 44444445444332225666444445666777888887777788887774
No 50
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=37.43 E-value=64 Score=22.84 Aligned_cols=40 Identities=13% Similarity=0.037 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHhhccCcchhhHHHHHHHHHHHHHHHhhh
Q psy15211 5 ILLESEISEAIMGFSSNEQFFLDYTLTNLSKNKSQFIKNALLSVSIAIAKASSNE 59 (68)
Q Consensus 5 ~~in~~i~p~L~g~~~~~q~~iD~~L~~ld~nks~lGana~~AvSiA~~~a~A~~ 59 (68)
..++ .+.|.|+|.++.+.. + .+.+ +..|+++|+.++.++.
T Consensus 55 ~~l~-~l~~~l~~~~~~~~~-------~--~~~~-----~~~aie~Al~Dl~~k~ 94 (307)
T TIGR01927 55 DFCR-ALIEEITRGDIEAID-------D--QLPS-----VAFGFESALIELESGD 94 (307)
T ss_pred HHHH-HHHHHhcccchhhcc-------c--cCcH-----HHHHHHHHHHHHhcCC
Confidence 3455 377888887765322 1 1223 6889999999998863
No 51
>COG3856 Sbp Uncharacterized conserved protein (small basic protein) [Function unknown]
Probab=36.71 E-value=34 Score=21.64 Aligned_cols=25 Identities=36% Similarity=0.639 Sum_probs=19.3
Q ss_pred chhhHHHHHHHHHHHHHHHhhhhCCCcc
Q psy15211 38 SQFIKNALLSVSIAIAKASSNELGLPLY 65 (68)
Q Consensus 38 s~lGana~~AvSiA~~~a~A~~~~~PLy 65 (68)
|-.=.|.++|+|++.. ...+|+|+|
T Consensus 60 sgFffNiilA~~lvyl---Gd~LGv~~y 84 (113)
T COG3856 60 SGFFFNIILAASLVYL---GDQLGVDLY 84 (113)
T ss_pred hHHHHHHHHHHHHHHH---hhhcCcchH
Confidence 4456799999999874 567777777
No 52
>KOG4253|consensus
Probab=35.00 E-value=66 Score=21.86 Aligned_cols=45 Identities=18% Similarity=0.076 Sum_probs=32.6
Q ss_pred HHHHHHHHHhhc---cCcchhhHHHHHHHHHHHHHHHhhhhCCCcccc
Q psy15211 23 QFFLDYTLTNLS---KNKSQFIKNALLSVSIAIAKASSNELGLPLYRY 67 (68)
Q Consensus 23 q~~iD~~L~~ld---~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~ 67 (68)
-++||++..|+. +|+.---+--+.+.|.+++..-......|.|++
T Consensus 76 nRKi~kl~~ele~qs~n~~~q~~~~K~vlSv~f~vl~~~~~~~~~~K~ 123 (175)
T KOG4253|consen 76 NRKINKLDKELETQSKNKTAQAHLHKWVLSVAFYVLKIMYGKTPVYKL 123 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhceeeee
Confidence 356666666665 555544555677899999998888888888865
No 53
>TIGR01519 plasmod_dom_1 Plasmodium falciparum uncharacterized domain. This model represents an uncharacterized domain present in roughly eight hypothetical proteins of the malaria parasite Plasmodium falciparum.
Probab=33.53 E-value=26 Score=20.55 Aligned_cols=51 Identities=24% Similarity=0.422 Sum_probs=28.7
Q ss_pred CChhhHHHHHHHHHhhccCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 18 FSSNEQFFLDYTLTNLSKNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 18 ~~~~~q~~iD~~L~~ld~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
++..|---||+.+..=-.||+..=.--+...|.+.+.|.--..++|-|.||
T Consensus 10 m~~fDnifidklid~~v~nk~S~~~~~~~~n~v~l~~A~~p~~~i~i~~Yi 60 (70)
T TIGR01519 10 MNIFDNIFIDKLIDNNVHNKGSIISEDVVPNSLLLSKALTPLTAIPILSYI 60 (70)
T ss_pred HHHHHHHHHHHHHccccccCCCcccHHHHHHHHHHHhcccchhhhhhHHHH
Confidence 344444445544332226663232335667777887766656778877764
No 54
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=33.43 E-value=31 Score=20.68 Aligned_cols=16 Identities=25% Similarity=0.127 Sum_probs=14.3
Q ss_pred ChhhHHHHHHHHHhhc
Q psy15211 19 SSNEQFFLDYTLTNLS 34 (68)
Q Consensus 19 ~~~~q~~iD~~L~~ld 34 (68)
...+|+++|+.+.-+|
T Consensus 49 Pl~~Q~DLDkAie~ld 64 (79)
T cd06405 49 PLKNQEDLDRAIELLD 64 (79)
T ss_pred eccCHHHHHHHHHHHc
Confidence 4678999999999998
No 55
>TIGR03725 bact_YeaZ universal bacterial protein YeaZ. This family describes a protein family, YeaZ, that appears to be universal in bacteria, but whose function is unknown. This family is related to the gcp (glycoprotease) protein family, also universal in bacteria and unknown in function. In Gram-positive lineages, members of these two related families often belong to the same operon, along with the ribosomal-protein-alanine acetyltransferase gene. Members of this family may occur as fusions with gcp or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI.
Probab=32.64 E-value=55 Score=21.65 Aligned_cols=26 Identities=31% Similarity=0.330 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCCccc
Q psy15211 41 IKNALLSVSIAIAKASSNELGLPLYR 66 (68)
Q Consensus 41 Gana~~AvSiA~~~a~A~~~~~PLy~ 66 (68)
|.=+-+=|+++++|..|...++|++-
T Consensus 65 GSfTGlRig~~~akgla~~~~~p~~~ 90 (202)
T TIGR03725 65 GSFTGLRIGLATAKGLALALGIPLVG 90 (202)
T ss_pred ChHHhHHHHHHHHHHHHHHhCCCEEe
Confidence 55555778899999999999999873
No 56
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=32.36 E-value=71 Score=23.60 Aligned_cols=26 Identities=35% Similarity=0.262 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCCccc
Q psy15211 41 IKNALLSVSIAIAKASSNELGLPLYR 66 (68)
Q Consensus 41 Gana~~AvSiA~~~a~A~~~~~PLy~ 66 (68)
|-=.-+-|.++++|+.|...++|++-
T Consensus 81 Gl~~~LrVG~~~Ak~LA~a~~~Plig 106 (345)
T PTZ00340 81 GMGAPLSVGAVVARTLSLLWGKPLVG 106 (345)
T ss_pred CcHhhHHHHHHHHHHHHHHcCCCEee
Confidence 44466778899999999999999873
No 57
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=32.29 E-value=79 Score=22.56 Aligned_cols=26 Identities=31% Similarity=0.184 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHHHHHHhhhhCCCcc
Q psy15211 40 FIKNALLSVSIAIAKASSNELGLPLY 65 (68)
Q Consensus 40 lGana~~AvSiA~~~a~A~~~~~PLy 65 (68)
.|.-+-+=|.++++|..|...++|++
T Consensus 80 PGsftglrig~~~Ak~la~~~~~p~~ 105 (314)
T TIGR03723 80 PGLIGALLVGVSFAKALALALNKPLI 105 (314)
T ss_pred CChHHhHHHHHHHHHHHHHHhCCCEE
Confidence 46667778899999999999999987
No 58
>PF12091 DUF3567: Protein of unknown function (DUF3567); InterPro: IPR021951 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved EIVDK sequence motif.
Probab=32.00 E-value=74 Score=19.28 Aligned_cols=27 Identities=15% Similarity=0.218 Sum_probs=19.1
Q ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHhhc
Q psy15211 6 LLESEISEAIMGFSSNEQFFLDYTLTNLS 34 (68)
Q Consensus 6 ~in~~i~p~L~g~~~~~q~~iD~~L~~ld 34 (68)
.+++.|. +|+..+| ++++||..|...+
T Consensus 49 ~Fr~~V~-~li~~~P-t~EevDdfL~~y~ 75 (85)
T PF12091_consen 49 MFREDVQ-ALIASEP-TQEEVDDFLGGYD 75 (85)
T ss_pred HHHHHHH-HHHhcCC-CHHHHHHHHHHHH
Confidence 3444444 5666666 5999999999875
No 59
>cd07050 BMC_EutL_repeat2 ethanolamine utilization protein S (EutS), Bacterial Micro-Compartment (BMC) domain repeat 2. EutL proteins are homologs of the carboxysome shell protein. They are encoded within the eut operon and might be required for the formation of the outer shell of the bacterial eut polyhedral organelles which are involved in the cobalamin-dependent degradation of ethanolamine. Although it has been suggested that EutL might form hexamers and further assemble into the flat facets of the polyhedral outer shell of eut organelles at present no experimental evidence directly supports this view. EutL proteins contain two tandem BMC domains. This CD includes domain 2 (the second BMC domain of EutL).
Probab=29.86 E-value=43 Score=20.38 Aligned_cols=44 Identities=25% Similarity=0.272 Sum_probs=27.5
Q ss_pred HcCCChhhHHHHHHHHHhhc---------cCcchhhHHHHHHHHHHHHHHHhhh
Q psy15211 15 IMGFSSNEQFFLDYTLTNLS---------KNKSQFIKNALLSVSIAIAKASSNE 59 (68)
Q Consensus 15 L~g~~~~~q~~iD~~L~~ld---------~nks~lGana~~AvSiA~~~a~A~~ 59 (68)
||.-...--..+|..|+..| +...+.|+ +.+.=|.+.||++...
T Consensus 21 LIapPlEa~y~lDaALKAAdV~~~~~~~PPSetNfgG-alLtGsqsAC~aAc~A 73 (87)
T cd07050 21 LIAPPLEAMYGLDAALKAADVELATFFPPPSETNFGG-ALLTGSQSACKAACNA 73 (87)
T ss_pred eecCcHHHHHHHHHHHHhhceeeEeeeCCCccccccc-eeeecCHHHHHHHHHH
Confidence 44555666788999999888 12224444 4555566667766543
No 60
>PF03640 Lipoprotein_15: Secreted repeat of unknown function; InterPro: IPR005297 This repeat is found in tandem in a set of lipoproteins. The alignment contains a Y-X4-D motif.
Probab=29.11 E-value=17 Score=19.36 Aligned_cols=10 Identities=40% Similarity=0.952 Sum_probs=7.8
Q ss_pred hhhCCCcccc
Q psy15211 58 NELGLPLYRY 67 (68)
Q Consensus 58 ~~~~~PLy~~ 67 (68)
...|.|||.|
T Consensus 14 ~~~G~~LY~f 23 (48)
T PF03640_consen 14 DYNGMPLYYF 23 (48)
T ss_pred CCCCCEEEEE
Confidence 3568999987
No 61
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=26.89 E-value=80 Score=18.37 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=15.0
Q ss_pred HcCCChhhHHHHHHHHHhhc
Q psy15211 15 IMGFSSNEQFFLDYTLTNLS 34 (68)
Q Consensus 15 L~g~~~~~q~~iD~~L~~ld 34 (68)
+.|..+ ++.++|.++.++|
T Consensus 43 ~lg~~~-~~~~v~~~i~~~D 61 (88)
T cd05027 43 FLEEIK-EQEVVDKVMETLD 61 (88)
T ss_pred HhcCCC-CHHHHHHHHHHhC
Confidence 456554 6788999999998
No 62
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=26.58 E-value=1.4e+02 Score=17.47 Aligned_cols=27 Identities=11% Similarity=0.150 Sum_probs=17.9
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHhhc
Q psy15211 7 LESEISEAIMGFSSNEQFFLDYTLTNLS 34 (68)
Q Consensus 7 in~~i~p~L~g~~~~~q~~iD~~L~~ld 34 (68)
+...+...| |...++++++|++|.++|
T Consensus 31 Lk~ll~~el-g~~ls~~~~v~~mi~~~D 57 (89)
T cd05022 31 FQELLTQQL-PHLLKDVEGLEEKMKNLD 57 (89)
T ss_pred HHHHHHHHh-hhhccCHHHHHHHHHHhC
Confidence 334444333 544566689999999998
No 63
>PF12431 CitT: Transcriptional regulator
Probab=26.33 E-value=46 Score=16.03 Aligned_cols=12 Identities=17% Similarity=0.083 Sum_probs=9.4
Q ss_pred hHHHHHHHHHhh
Q psy15211 22 EQFFLDYTLTNL 33 (68)
Q Consensus 22 ~q~~iD~~L~~l 33 (68)
+|..||+++..-
T Consensus 2 ~Q~~VD~lf~~~ 13 (30)
T PF12431_consen 2 DQSDVDALFNSQ 13 (30)
T ss_pred CHHHHHHHHCcc
Confidence 689999887653
No 64
>PF06947 DUF1290: Protein of unknown function (DUF1290); InterPro: IPR009709 This family consists of several bacterial small basic proteins of around 100 residues in length. The function of this family is unknown.
Probab=26.10 E-value=67 Score=19.58 Aligned_cols=24 Identities=33% Similarity=0.634 Sum_probs=18.0
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhCCCcc
Q psy15211 39 QFIKNALLSVSIAIAKASSNELGLPLY 65 (68)
Q Consensus 39 ~lGana~~AvSiA~~~a~A~~~~~PLy 65 (68)
-.=+|+++|+-++.- ....|+|||
T Consensus 41 gFf~N~~lAa~L~~l---Gd~LGv~Ly 64 (88)
T PF06947_consen 41 GFFSNVLLAALLVYL---GDRLGVDLY 64 (88)
T ss_pred hhHHHHHHHHHHHHH---HhhcCchhH
Confidence 456799999877763 677788877
No 65
>PF08815 Nuc_rec_co-act: Nuclear receptor coactivator; InterPro: IPR014920 This entry represents the interlocking domain of the eukaryotic nuclear receptor coactivators Ncoa1, Ncoa2 and Ncoa3. The interlocking domain forms a 3-helical non-globular array that forms interlocked heterodimers with its target. Nuclear receptors are ligand-activated transcription factors involved in the regulation of many processes, including development, reproduction and homeostasis. Nuclear receptor coactivators act to modulate the function of nuclear receptors. Coactivators associate with promoters and enhancers primarily through protein-protein contacts to facilitate the interaction between DNA-bound transcription factors and the transcription machinery. In addition to their role as coactivators of various nuclear receptors, Ncoa1 and Ncoa3 both have histone acetyltransferase activity (2.3.1.48 from EC), but Ncoa2 does not [, ]. ; GO: 0003713 transcription coactivator activity, 0035257 nuclear hormone receptor binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2C52_B 1KBH_A.
Probab=24.43 E-value=32 Score=19.00 Aligned_cols=23 Identities=9% Similarity=0.013 Sum_probs=18.2
Q ss_pred HHHHHHHcCCChhhHHHHHHHHH
Q psy15211 9 SEISEAIMGFSSNEQFFLDYTLT 31 (68)
Q Consensus 9 ~~i~p~L~g~~~~~q~~iD~~L~ 31 (68)
+.+-..|.+.|.+.-++||+.|-
T Consensus 11 dQL~s~L~~~D~~~LeEIDraLG 33 (51)
T PF08815_consen 11 DQLYSLLSNTDVTGLEEIDRALG 33 (51)
T ss_dssp HHHHHHCCTSSGCCCHCCHHHTT
T ss_pred HHHHHHHhccchhhHHHHHHHhC
Confidence 34566788899999999998874
No 66
>PRK01217 hypothetical protein; Provisional
Probab=23.00 E-value=9.8 Score=23.94 Aligned_cols=20 Identities=15% Similarity=0.250 Sum_probs=14.1
Q ss_pred cCcchhhHHHHHHHHHHHHH
Q psy15211 35 KNKSQFIKNALLSVSIAIAK 54 (68)
Q Consensus 35 ~nks~lGana~~AvSiA~~~ 54 (68)
++-.++||||+++|.+-...
T Consensus 74 ~~A~~lGAnAVVgvrfd~s~ 93 (114)
T PRK01217 74 DHAKELGANAVINVRFDSNE 93 (114)
T ss_pred HHHHHcCCCEEEEEEEEHHH
Confidence 34577999999887665443
No 67
>PRK03732 hypothetical protein; Provisional
Probab=21.85 E-value=5.7 Score=25.10 Aligned_cols=18 Identities=17% Similarity=0.206 Sum_probs=13.2
Q ss_pred cCcchhhHHHHHHHHHHH
Q psy15211 35 KNKSQFIKNALLSVSIAI 52 (68)
Q Consensus 35 ~nks~lGana~~AvSiA~ 52 (68)
++-.++||||+++|.+-.
T Consensus 74 ~~A~~lGAnAVVgvr~d~ 91 (114)
T PRK03732 74 LHAKELGANAVVNFRFAT 91 (114)
T ss_pred HHHHHcCCCEEEEEEEEe
Confidence 445789999998876543
No 68
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=20.92 E-value=1.7e+02 Score=22.17 Aligned_cols=31 Identities=6% Similarity=0.089 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHhhc
Q psy15211 4 DILLESEISEAIMGFSSNEQFFLDYTLTNLS 34 (68)
Q Consensus 4 v~~in~~i~p~L~g~~~~~q~~iD~~L~~ld 34 (68)
.++|...|...++|.+..+...+|.-..++.
T Consensus 238 mqnI~~~l~ksligqPiEdIDkvnk~~k~l~ 268 (396)
T COG5109 238 MQNIQEALKKSLIGQPIEDIDKVNKSRKKLI 268 (396)
T ss_pred HHHHHHHHHHhhcCCcHHHHHHhhhhHHHHH
Confidence 4678888999999999888888887777663
No 69
>PF00814 Peptidase_M22: Glycoprotease family; InterPro: IPR000905 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase (3.4.24.57 from EC) from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues []. Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 [, ]. Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion [, ]. Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis []. The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2A6A_A 2GEL_G 2GEM_B 1OKJ_B 3ENO_A 3EN9_B 2VWB_B 3ENH_B 2IVO_D 2IVP_A ....
Probab=20.55 E-value=1.1e+02 Score=21.27 Aligned_cols=26 Identities=27% Similarity=0.263 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCCccc
Q psy15211 41 IKNALLSVSIAIAKASSNELGLPLYR 66 (68)
Q Consensus 41 Gana~~AvSiA~~~a~A~~~~~PLy~ 66 (68)
|.=+-+=|.++++|+.|...++|++-
T Consensus 61 GsftgLrvG~~~Ak~La~~~~~Pli~ 86 (268)
T PF00814_consen 61 GSFTGLRVGLSFAKGLALALNIPLIG 86 (268)
T ss_dssp S-HHHHHHHHHHHHHHHHHTT--EEE
T ss_pred CcccccHHHHHHHHHHHHHhCCCeEe
Confidence 55566788899999999999999873
Done!