RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15211
(68 letters)
>gnl|CDD|234617 PRK00077, eno, enolase; Provisional.
Length = 425
Score = 75.5 bits (187), Expect = 4e-18
Identities = 27/63 (42%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 8 ESEISEAIMGFSSNEQFFLDYTLTNL--SKNKSQFIKNALLSVSIAIAKASSNELGLPLY 65
EI+ A++G + +Q +D + L + NKS+ NA+L VS+A+AKA+++ LGLPLY
Sbjct: 72 NEEIAPALIGLDALDQRAIDKAMIELDGTPNKSKLGANAILGVSLAVAKAAADSLGLPLY 131
Query: 66 RYI 68
RY+
Sbjct: 132 RYL 134
>gnl|CDD|202827 pfam03952, Enolase_N, Enolase, N-terminal domain.
Length = 132
Score = 67.5 bits (166), Expect = 2e-16
Identities = 28/63 (44%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 8 ESEISEAIMGFSSNEQFFLDYTLTNL--SKNKSQFIKNALLSVSIAIAKASSNELGLPLY 65
I+ A++G + +Q +D TL L + NKS+ NA+L+VS+A+AKA++ LGLPLY
Sbjct: 70 NEIIAPALIGMDARDQRAIDKTLIELDGTPNKSKLGANAILAVSLAVAKAAAAALGLPLY 129
Query: 66 RYI 68
RY+
Sbjct: 130 RYL 132
>gnl|CDD|223226 COG0148, Eno, Enolase [Carbohydrate transport and metabolism].
Length = 423
Score = 68.4 bits (168), Expect = 1e-15
Identities = 26/63 (41%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 8 ESEISEAIMGFSSNEQFFLDYTLTNL--SKNKSQFIKNALLSVSIAIAKASSNELGLPLY 65
I+ A++G + +Q +D L L ++NKS+ NA+L VS+A+AKA++ LG+PLY
Sbjct: 71 NEIIAPALIGLDATDQALIDSLLIELDGTENKSKLGANAILGVSLAVAKAAAASLGIPLY 130
Query: 66 RYI 68
RY+
Sbjct: 131 RYL 133
>gnl|CDD|239429 cd03313, enolase, Enolase: Enolases are homodimeric enzymes that
catalyse the reversible dehydration of
2-phospho-D-glycerate to phosphoenolpyruvate as part of
the glycolytic and gluconeogenesis pathways. The
reaction is facilitated by the presence of metal ions.
Length = 408
Score = 67.9 bits (167), Expect = 2e-15
Identities = 27/63 (42%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 8 ESEISEAIMGFSSNEQFFLDYTLTNL--SKNKSQFIKNALLSVSIAIAKASSNELGLPLY 65
I+ A++G +Q +D L L + NKS+ NA+L VS+A+AKA++ LGLPLY
Sbjct: 67 NEIIAPALIGMDVTDQRAIDKLLIELDGTPNKSKLGANAILGVSLAVAKAAAAALGLPLY 126
Query: 66 RYI 68
RY+
Sbjct: 127 RYL 129
>gnl|CDD|213580 TIGR01060, eno, phosphopyruvate hydratase. Alternate name: enolase
[Energy metabolism, Glycolysis/gluconeogenesis].
Length = 425
Score = 61.2 bits (149), Expect = 4e-13
Identities = 26/63 (41%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 8 ESEISEAIMGFSSNEQFFLDYTLTNL--SKNKSQFIKNALLSVSIAIAKASSNELGLPLY 65
I+ ++G + +Q +D L L + NKS+ NA+L VS+A+AKA+++ LGLPLY
Sbjct: 69 NEIIAPELIGMDATDQREIDQILIELDGTPNKSKLGANAILGVSMAVAKAAADSLGLPLY 128
Query: 66 RYI 68
RY+
Sbjct: 129 RYL 131
>gnl|CDD|215095 PLN00191, PLN00191, enolase.
Length = 457
Score = 47.4 bits (113), Expect = 3e-08
Identities = 22/60 (36%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 11 ISEAIMGFSSNEQFFLDYTLTNL--SKNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68
I+ A++G +Q +D + L + NK + NA+L+VS+A+ KA + E G+PLY++I
Sbjct: 97 IAPALIGMDPTDQTQIDNFMLELDGTPNKGKLGANAILAVSLAVCKAGAAEKGVPLYKHI 156
>gnl|CDD|240259 PTZ00081, PTZ00081, enolase; Provisional.
Length = 439
Score = 44.3 bits (105), Expect = 5e-07
Identities = 22/66 (33%), Positives = 40/66 (60%), Gaps = 8/66 (12%)
Query: 11 ISEAIMGFSSNEQFFLDYTLTNL---SKNKSQFIK-----NALLSVSIAIAKASSNELGL 62
I+ A++G +Q LD + +KN+ + K NA+L+VS+A+A+A++ G+
Sbjct: 74 IAPALIGKDVTDQKKLDKLMVEQLDGTKNEWGWCKSKLGANAILAVSMAVARAAAAAKGV 133
Query: 63 PLYRYI 68
PLY+Y+
Sbjct: 134 PLYKYL 139
>gnl|CDD|169397 PRK08350, PRK08350, hypothetical protein; Provisional.
Length = 341
Score = 43.3 bits (102), Expect = 1e-06
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 6/66 (9%)
Query: 9 SEISEAI----MGFSSNEQFFLDYTLTNL--SKNKSQFIKNALLSVSIAIAKASSNELGL 62
SE+ E I +GF ++EQ +D L + +++ S N L+VS+A+AKA++N +
Sbjct: 54 SEVDEIIGPELIGFDASEQELIDSYLWEIDGTEDFSHIGANTALAVSVAVAKAAANSKNM 113
Query: 63 PLYRYI 68
PLY YI
Sbjct: 114 PLYSYI 119
>gnl|CDD|239435 cd03319, L-Ala-DL-Glu_epimerase, L-Ala-D/L-Glu epimerase catalyzes
the epimerization of L-Ala-D/L-Glu and other dipeptides.
The genomic context and the substrate specificity of
characterized members of this family from E.coli and
B.subtilis indicates a possible role in the metabolism
of the murein peptide of peptidoglycan, of which
L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a
member of the enolase-superfamily, which is
characterized by the presence of an enolate anion
intermediate which is generated by abstraction of the
alpha-proton of the carboxylate substrate by an active
site residue and is stabilized by coordination to the
essential Mg2+ ion.
Length = 316
Score = 28.7 bits (65), Expect = 0.17
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 9 SEISEAIMGFSSNEQFFLDYTLTNLSKNKSQFIKNALLSVSIAIAKASSNELGLPLYRY 67
+ A++G + L+ L N + + A V IA+ + LGLPLY+
Sbjct: 62 KSVRPALIGGDPRLEKLLEALQELLPGNGA--ARAA---VDIALWDLEAKLLGLPLYQL 115
>gnl|CDD|214338 CHL00025, ndhF, NADH dehydrogenase subunit 5.
Length = 741
Score = 25.6 bits (57), Expect = 2.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 26 LDYTLTNLSKNKSQFIKNALLSVSIAI 52
L + +N S + +F+ NA+ SVSIA
Sbjct: 584 LLHQNSNNSVDWYEFLTNAIFSVSIAF 610
>gnl|CDD|216241 pfam01010, Oxidored_q1_C, NADH-Ubiquinone oxidoreductase (complex
I) subunit C-terminus. This sub-family represents a
carboxyl terminal extension of pfam00361. It includes
subunit 5 from chloroplasts, and bacterial subunit L.
This sub-family is part of complex I which catalyzes the
transfer of two electrons from NADH to ubiquinone in a
reaction that is associated with proton translocation
across the membrane.
Length = 242
Score = 25.2 bits (56), Expect = 2.7
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 32 NLSKNKSQFIKNALLSVSIAI 52
N S + +F+KNA+ SVSIA
Sbjct: 146 NNSVDWYEFLKNAIFSVSIAY 166
>gnl|CDD|132842 cd07203, cPLA2_Fungal_PLB, Fungal Phospholipase B-like; cPLA2
GrpIVA homologs; catalytic domain. Fungal
phospholipase B are Group IV cPLA2 homologs.
Aspergillus PLA2 is Ca-dependent, yet it does not
contain a C2 domain. PLB deacylates both sn-1 and sn-2
chains of phospholipids and are abundantly expressed in
fungi. It shows lysophospholipase (lysoPL) and
transacylase activities. The active site residues from
cPLA2 are also conserved in PLB. Like cPLA2, PLB also
has a consensus sequence of Sm-X-Nu-Sm (Sm = small
residue, X = any residue and Nu = nucleophile). It
includes PLB1 from Schizosaccharomyces pombe, PLB2 from
Candida glabrata, and PLB3 from Saccharomyces
cerevisiae. PLB1, PLB2, and PLB3 show PLB and lysoPL
activities; PLB3 is specific for phosphoinositides.
Length = 552
Score = 25.0 bits (55), Expect = 3.5
Identities = 12/50 (24%), Positives = 22/50 (44%)
Query: 11 ISEAIMGFSSNEQFFLDYTLTNLSKNKSQFIKNALLSVSIAIAKASSNEL 60
I A G S+NEQ +L+ + + F+ A L+ + +S+
Sbjct: 13 IRSASDGLSTNEQEYLEKRRSITNSALKDFLSRANLNGDDDLDSNNSSNG 62
>gnl|CDD|130582 TIGR01519, plasmod_dom_1, Plasmodium falciparum uncharacterized
domain. This model represents an uncharacterized
domain present in roughly eight hypothetical proteins
of the malaria parasite Plasmodium falciparum.
Length = 70
Score = 23.6 bits (51), Expect = 6.7
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 25 FLDYTLTNLSKNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68
F+D + N NK I ++ S+ ++KA + +P+ YI
Sbjct: 17 FIDKLIDNNVHNKGSIISEDVVPNSLLLSKALTPLTAIPILSYI 60
>gnl|CDD|219026 pfam06432, GPI2, Phosphatidylinositol
N-acetylglucosaminyltransferase.
Glycosylphosphatidylinositol (GPI) represents an
important anchoring molecule for cell surface proteins.
The first step in its synthesis is the transfer of
N-acetylglucosamine (GlcNAc) from
UDP-N-acetylglucosamine to phosphatidylinositol (PI).
This step involves products of three or four genes in
both yeast (GPI1, GPI2 and GPI3) and mammals (GPI1, PIG
A, PIG H and PIG C), respectively.
Length = 268
Score = 23.7 bits (52), Expect = 8.9
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 24 FFLDYTLTNLSKNKSQFIKNALLSVSIAIA 53
F DY N + S NA L SI +A
Sbjct: 145 LFHDYGYLNTKQLSSSLSTNAALFASIVLA 174
>gnl|CDD|236594 PRK09618, flgD, flagellar basal body rod modification protein;
Provisional.
Length = 142
Score = 23.4 bits (51), Expect = 9.8
Identities = 8/28 (28%), Positives = 16/28 (57%), Gaps = 6/28 (21%)
Query: 18 FSSNEQFFLDYTLTNLSKNKSQFIKNAL 45
FSS EQ +TN++K+ + + ++
Sbjct: 61 FSSLEQ------MTNMNKSMEKLVSSSD 82
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.130 0.335
Gapped
Lambda K H
0.267 0.0662 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,205,403
Number of extensions: 225055
Number of successful extensions: 235
Number of sequences better than 10.0: 1
Number of HSP's gapped: 231
Number of HSP's successfully gapped: 20
Length of query: 68
Length of database: 10,937,602
Length adjustment: 39
Effective length of query: 29
Effective length of database: 9,207,796
Effective search space: 267026084
Effective search space used: 267026084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.3 bits)