RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15211
(68 letters)
>3uj2_A Enolase 1; enzyme function initiative, EFI, lyase; 2.00A
{Anaerostipes caccae}
Length = 449
Score = 73.7 bits (182), Expect = 1e-17
Identities = 26/61 (42%), Positives = 44/61 (72%), Gaps = 2/61 (3%)
Query: 10 EISEAIMGFSSNEQFFLDYTLTNL--SKNKSQFIKNALLSVSIAIAKASSNELGLPLYRY 67
EISE + G +++ + +D + + +K+KS+F NA+L+VSIA AKA++ LG+PLYR+
Sbjct: 98 EISEILSGMDASDIYAVDRAMIDADGTKDKSKFGANAVLAVSIACAKAAAAALGVPLYRF 157
Query: 68 I 68
+
Sbjct: 158 L 158
>1w6t_A Enolase; bacterial infection, surface protein, moonlighting
protein, glycolysis, phosphopyruvate hydratase, lyase;
HET: 2PE; 2.10A {Streptococcus pneumoniae} SCOP:
c.1.11.1 d.54.1.1 PDB: 1iyx_A
Length = 444
Score = 73.7 bits (182), Expect = 1e-17
Identities = 24/61 (39%), Positives = 40/61 (65%), Gaps = 2/61 (3%)
Query: 10 EISEAIMGFSSNEQFFLDYTLTNL--SKNKSQFIKNALLSVSIAIAKASSNELGLPLYRY 67
I+EAI+G+ +Q +D + L + NK + NA+L VSIA+A+A+++ L +PLY Y
Sbjct: 84 IIAEAIIGYDVRDQQAIDRAMIALDGTPNKGKLGANAILGVSIAVARAAADYLEIPLYSY 143
Query: 68 I 68
+
Sbjct: 144 L 144
>3tqp_A Enolase; energy metabolism, lyase; 2.20A {Coxiella burnetii}
Length = 428
Score = 73.3 bits (181), Expect = 1e-17
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 10 EISEAIMGFSSNEQFFLDYTLTNL--SKNKSQFIKNALLSVSIAIAKASSNELGLPLYRY 67
I +A++G Q +D + L ++NK+ NA+L VS+A+A A++N LPLYRY
Sbjct: 75 PIRDALLGQDPRSQEEIDRIMIELDGTENKANLGANAILGVSLAVAYAAANNADLPLYRY 134
Query: 68 I 68
+
Sbjct: 135 L 135
>2fym_A Enolase; RNA degradosome, enolase, lyase; 1.60A {Escherichia coli}
SCOP: c.1.11.1 d.54.1.1 PDB: 1e9i_A 3h8a_A
Length = 431
Score = 73.3 bits (181), Expect = 1e-17
Identities = 24/61 (39%), Positives = 43/61 (70%), Gaps = 2/61 (3%)
Query: 10 EISEAIMGFSSNEQFFLDYTLTNL--SKNKSQFIKNALLSVSIAIAKASSNELGLPLYRY 67
I++A++G + +Q +D + +L ++NKS+F NA+L+VS+A AKA++ G+PLY +
Sbjct: 73 PIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEH 132
Query: 68 I 68
I
Sbjct: 133 I 133
>3qn3_A Enolase; structural genomics, center for structural genomics of
infec diseases, csgid, glycolysis, lyase; 2.13A
{Campylobacter jejuni}
Length = 417
Score = 73.3 bits (181), Expect = 1e-17
Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 9 SEISEAIMGFSSNEQFFLDYTLTNL--SKNKSQFIKNALLSVSIAIAKASSNELGLPLYR 66
I++ I+G + Q LD TL L + N S NA L VS+A A+A++ LG+PLYR
Sbjct: 75 ETIADEILGLDAFNQTQLDDTLRELDGTNNYSNLGANATLGVSMATARAAAAALGMPLYR 134
Query: 67 YI 68
Y+
Sbjct: 135 YL 136
>2pa6_A Enolase; glycolysis, lyase, magnesium, metal-binding, structural
GENO NPPSFA; 1.85A {Methanocaldococcus jannaschii}
Length = 427
Score = 72.2 bits (178), Expect = 4e-17
Identities = 23/62 (37%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 9 SEISEAIMGFSSNEQFFLDYTLTNL--SKNKSQFIKNALLSVSIAIAKASSNELGLPLYR 66
S I I+G+ + Q +D + L + NKS+ NA+L+VS+A+AKA++ +PLY+
Sbjct: 79 SIIRPEILGYDARMQREIDTIMIELDGTPNKSRLGANAILAVSLAVAKAAAATAKIPLYK 138
Query: 67 YI 68
Y+
Sbjct: 139 YL 140
>3qtp_A Enolase 1; glycolysis, lyase; HET: 2PG; 1.90A {Entamoeba
histolytica}
Length = 441
Score = 71.0 bits (175), Expect = 9e-17
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 9 SEISEAIMGFSSNEQFFLDYTLTNL--SKNKSQFIKNALLSVSIAIAKASSNELGLPLYR 66
+ I A++G + Q LD + L + NK + NA+L S++I +A++ E GLPLY+
Sbjct: 76 TIIGPALLGKNVLNQAELDEMMIKLDGTNNKGKLGANAILGCSMSICRAAAAEKGLPLYK 135
Query: 67 YI 68
Y+
Sbjct: 136 YL 137
>2ptz_A Enolase; lyase, glycolysis,His-TAG; 1.65A {Trypanosoma brucei}
SCOP: c.1.11.1 d.54.1.1 PDB: 2ptx_A 2pty_A* 2ptw_A
2pu0_A 2pu1_A* 1oep_A
Length = 432
Score = 71.0 bits (175), Expect = 1e-16
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 9 SEISEAIMGFSSNEQFFLDYTLTNL--SKNKSQFIKNALLSVSIAIAKASSNELGLPLYR 66
I A++G +Q LD + L + NK + NA+L S+AI+KA++ G+PLYR
Sbjct: 74 EVIGPALIGRDELKQEELDTLMLRLDGTPNKGKLGANAILGCSMAISKAAAAAKGVPLYR 133
Query: 67 YI 68
Y+
Sbjct: 134 YL 135
>2al1_A Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: PEP 2PG; 1.50A
{Saccharomyces cerevisiae} SCOP: c.1.11.1 d.54.1.1 PDB:
1ebg_A 1ebh_A* 1one_A* 2one_A* 1p48_A* 1p43_A* 1l8p_A
4enl_A 1nel_A 1els_A 3enl_A 5enl_A* 6enl_A 7enl_A*
2al2_A* 2al2_B* 2xh7_A* 2xgz_A* 2xh2_A* 2xh4_A* ...
Length = 436
Score = 66.0 bits (162), Expect = 5e-15
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 9 SEISEAIM--GFSSNEQFFLDYTLTNL--SKNKSQFIKNALLSVSIAIAKASSNELGLPL 64
I+ A + +Q +D L +L + NKS+ NA+L VS+A ++A++ E +PL
Sbjct: 70 DVIAPAFVKANIDVKDQKAVDDFLISLDGTANKSKLGANAILGVSLAASRAAAAEKNVPL 129
Query: 65 YRYI 68
Y+++
Sbjct: 130 YKHL 133
>2akz_A Gamma enolase, neural; fluoride inhibition, negative cooperativity,
glycolysis, , isothermal titration calorimetry, lyase;
1.36A {Homo sapiens} SCOP: c.1.11.1 d.54.1.1 PDB: 2akm_A
1te6_A 2psn_A 3b97_A 2xsx_A 1pdz_A 1pdy_A
Length = 439
Score = 66.0 bits (162), Expect = 6e-15
Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 4/64 (6%)
Query: 9 SEISEAIM--GFSSNEQFFLDYTLTNL--SKNKSQFIKNALLSVSIAIAKASSNELGLPL 64
S I+ A++ G S EQ LD + L ++NKS+F NA+L VS+A+ KA + E LPL
Sbjct: 70 STIAPALISSGLSVVEQEKLDNLMLELDGTENKSKFGANAILGVSLAVCKAGAAERELPL 129
Query: 65 YRYI 68
YR+I
Sbjct: 130 YRHI 133
>3otr_A Enolase; structural genomics, center for structural genomics of
infec diseases, csgid, alpha-beta barrel, TIM barrel;
2.75A {Toxoplasma gondii}
Length = 452
Score = 64.9 bits (159), Expect = 1e-14
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 8/68 (11%)
Query: 9 SEISEAIMGFSSNEQFFLDYTLTNL---SKNKSQFIK-----NALLSVSIAIAKASSNEL 60
EI A++G +Q +D + +KN+ + K NA+L VSIA +A +
Sbjct: 72 QEIKPALLGKDPCDQKGIDMLMVEQLDGTKNEWGYSKSKLGANAILGVSIACCRAGAASK 131
Query: 61 GLPLYRYI 68
GLPLY+YI
Sbjct: 132 GLPLYKYI 139
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 0.032
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 9/44 (20%)
Query: 19 SSNEQFF-------LDYTLTN-LSKNKSQFIKNALLSVSIAIAK 54
N+Q+ LD T+TN L+ K Q I L S+++ +
Sbjct: 1848 VENQQYVAAGDLRALD-TVTNVLNFIKLQKIDIIELQKSLSLEE 1890
Score = 24.6 bits (53), Expect = 3.3
Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 9/48 (18%)
Query: 17 GFSSNEQFF--LDYTLTNLSK-------NKSQFIKNALLSVSIAIAKA 55
G E+ F ++ T+ + + +QF + AL + A +
Sbjct: 1699 GKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFED 1746
Score = 24.2 bits (52), Expect = 3.8
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 6/64 (9%)
Query: 2 NADILLESEISEAIMGFSSNEQFF-----LDYTLTNLSKN-KSQFIKNALLSVSIAIAKA 55
+ D LL IS ++G + L +T L K + L ++AIA+
Sbjct: 227 DKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAET 286
Query: 56 SSNE 59
S E
Sbjct: 287 DSWE 290
>1tdh_A NEI endonuclease VIII-like 1; helix two turns helix, zinc-LESS
finger, hydrolase; 2.10A {Homo sapiens} SCOP: a.156.1.2
b.113.1.1 g.39.1.8
Length = 364
Score = 29.9 bits (67), Expect = 0.041
Identities = 7/29 (24%), Positives = 9/29 (31%)
Query: 18 FSSNEQFFLDYTLTNLSKNKSQFIKNALL 46
+QF K + I ALL
Sbjct: 138 LQEYQQFRESVLRNLADKAFDRPICEALL 166
>1kcz_A Beta-methylaspartase; beta zigzag, alpha/beta-barrel, lyase; 1.90A
{Clostridium tetanomorphum} SCOP: c.1.11.2 d.54.1.1 PDB:
1kd0_A* 3zvi_A 3zvh_A
Length = 413
Score = 28.9 bits (64), Expect = 0.089
Identities = 9/62 (14%), Positives = 23/62 (37%)
Query: 7 LESEISEAIMGFSSNEQFFLDYTLTNLSKNKSQFIKNALLSVSIAIAKASSNELGLPLYR 66
+E EI+ ++G + ++ N ++ ++ AI A + + +
Sbjct: 93 IEKEIAPKLIGREITNFKPMAEEFDKMTVNGNRLHTAIRYGITQAILDAVAKTRKVTMAE 152
Query: 67 YI 68
I
Sbjct: 153 VI 154
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA
repair, beta sandwich, zinc finger, helix two-turns
helix, hydrolase/DNA complex; HET: PED; 2.10A
{Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Length = 268
Score = 26.3 bits (59), Expect = 0.58
Identities = 7/25 (28%), Positives = 10/25 (40%), Gaps = 1/25 (4%)
Query: 22 EQFFLDYTLTNLSKNKSQFIKNALL 46
+ F +Y L K IK L+
Sbjct: 135 DDFNGEY-LHQKCAKKKTAIKPWLM 158
>4a17_H RPL10, 60S ribosomal protein L10; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_H 4a1c_H 4a1e_H
Length = 215
Score = 26.6 bits (58), Expect = 0.63
Identities = 10/50 (20%), Positives = 15/50 (30%)
Query: 16 MGFSSNEQFFLDYTLTNLSKNKSQFIKNALLSVSIAIAKASSNELGLPLY 65
G Y + +S K Q AL + IA K + +
Sbjct: 36 SGRKKATVEEFPYVVHIVSDEKEQITSEALEAARIAANKNLIKFISKDAF 85
>3twl_A Formamidopyrimidine-DNA glycosylase 1; helix two turns helix,
zinc-LESS finger, hydrolase, DNA DAMA repair,
DNA-binding, glycosidase, lyase; 1.70A {Arabidopsis
thaliana} PDB: 3twm_A* 3twk_A
Length = 310
Score = 26.1 bits (58), Expect = 0.78
Identities = 7/25 (28%), Positives = 8/25 (32%), Gaps = 1/25 (4%)
Query: 22 EQFFLDYTLTNLSKNKSQFIKNALL 46
E +D K IK LL
Sbjct: 153 EPMTVDE-FAESLAKKKITIKPLLL 176
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET:
VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A*
1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A
1pjj_A*
Length = 271
Score = 25.5 bits (57), Expect = 1.1
Identities = 6/25 (24%), Positives = 9/25 (36%), Gaps = 1/25 (4%)
Query: 22 EQFFLDYTLTNLSKNKSQFIKNALL 46
E F + ++ IK LL
Sbjct: 138 EDFDEKL-FREKLRKSTKKIKPYLL 161
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns
helix, riken STR genomics/proteomics initiative, RSGI,
structural genomics; 1.90A {Thermus thermophilus} SCOP:
a.156.1.2 b.113.1.1 g.39.1.8
Length = 266
Score = 25.2 bits (56), Expect = 1.9
Identities = 6/25 (24%), Positives = 9/25 (36%), Gaps = 1/25 (4%)
Query: 22 EQFFLDYTLTNLSKNKSQFIKNALL 46
E F K ++ +K LL
Sbjct: 128 EAFAFPG-FFRGLKESARPLKALLL 151
>3vk8_A Probable formamidopyrimidine-DNA glycosylase; DNA glycosylase,
hneil1 ortholog, DNA lesion, thymine glycol zincless
finger; HET: DNA CTG; 2.00A {Acanthamoeba polyphaga
mimivirus} PDB: 3vk7_A* 3a42_A 3a46_A* 3a45_A*
Length = 295
Score = 24.5 bits (54), Expect = 2.8
Identities = 5/25 (20%), Positives = 8/25 (32%)
Query: 22 EQFFLDYTLTNLSKNKSQFIKNALL 46
+ D + K Q I L+
Sbjct: 138 DFLKNDDIDISKIKKYKQPIVALLM 162
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.130 0.335
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 906,825
Number of extensions: 37882
Number of successful extensions: 132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 23
Length of query: 68
Length of database: 6,701,793
Length adjustment: 38
Effective length of query: 30
Effective length of database: 5,640,795
Effective search space: 169223850
Effective search space used: 169223850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.9 bits)