RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15211
         (68 letters)



>d1w6ta2 d.54.1.1 (A:1-137) Enolase {Streptococcus pneumoniae
           [TaxId: 1313]}
          Length = 137

 Score = 57.3 bits (138), Expect = 4e-13
 Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 2/70 (2%)

Query: 1   MNADILLESEISEAIMGFSSNEQFFLDYTLTNL--SKNKSQFIKNALLSVSIAIAKASSN 58
             A   + + I+EAI+G+   +Q  +D  +  L  + NK +   NA+L VSIA+A+A+++
Sbjct: 65  QKAVDNVNNIIAEAIIGYDVRDQQAIDRAMIALDGTPNKGKLGANAILGVSIAVARAAAD 124

Query: 59  ELGLPLYRYI 68
            L +PLY Y+
Sbjct: 125 YLEIPLYSYL 134


>d2akza2 d.54.1.1 (A:1-139) Enolase {Human (Homo sapiens), gamma
           isoform [TaxId: 9606]}
          Length = 139

 Score = 55.7 bits (134), Expect = 1e-12
 Identities = 29/65 (44%), Positives = 41/65 (63%), Gaps = 4/65 (6%)

Query: 8   ESEISEAIM--GFSSNEQFFLDYTLTNL--SKNKSQFIKNALLSVSIAIAKASSNELGLP 63
            S I+ A++  G S  EQ  LD  +  L  ++NKS+F  NA+L VS+A+ KA + E  LP
Sbjct: 69  NSTIAPALISSGLSVVEQEKLDNLMLELDGTENKSKFGANAILGVSLAVCKAGAAERELP 128

Query: 64  LYRYI 68
           LYR+I
Sbjct: 129 LYRHI 133


>d2fyma2 d.54.1.1 (A:1-139) Enolase {Escherichia coli [TaxId: 562]}
          Length = 139

 Score = 50.7 bits (121), Expect = 1e-10
 Identities = 24/61 (39%), Positives = 43/61 (70%), Gaps = 2/61 (3%)

Query: 10  EISEAIMGFSSNEQFFLDYTLTNL--SKNKSQFIKNALLSVSIAIAKASSNELGLPLYRY 67
            I++A++G  + +Q  +D  + +L  ++NKS+F  NA+L+VS+A AKA++   G+PLY +
Sbjct: 73  PIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEH 132

Query: 68  I 68
           I
Sbjct: 133 I 133


>d2al1a2 d.54.1.1 (A:1-141) Enolase {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 141

 Score = 50.0 bits (119), Expect = 3e-10
 Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 2/56 (3%)

Query: 15  IMGFSSNEQFFLDYTLTNL--SKNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68
                  +Q  +D  L +L  + NKS+   NA+L VS+A ++A++ E  +PLY+++
Sbjct: 78  KANIDVKDQKAVDDFLISLDGTANKSKLGANAILGVSLAASRAAAAEKNVPLYKHL 133


>d1pdza2 d.54.1.1 (A:1-139) Enolase {European lobster (Homarus
           vulgaris) [TaxId: 6707]}
          Length = 139

 Score = 49.2 bits (117), Expect = 5e-10
 Identities = 20/35 (57%), Positives = 27/35 (77%)

Query: 34  SKNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68
           ++NKS    NA+L VS+AI KA + ELG+PLYR+I
Sbjct: 99  TENKSSLGANAILGVSLAICKAGAAELGIPLYRHI 133


>d2ptza2 d.54.1.1 (A:0-138) Enolase {Trypanosoma brucei [TaxId:
           5691]}
          Length = 139

 Score = 48.8 bits (116), Expect = 7e-10
 Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 2/63 (3%)

Query: 8   ESEISEAIMGFSSNEQFFLDYTLTNL--SKNKSQFIKNALLSVSIAIAKASSNELGLPLY 65
              I  A++G    +Q  LD  +  L  + NK +   NA+L  S+AI+KA++   G+PLY
Sbjct: 71  NEVIGPALIGRDELKQEELDTLMLRLDGTPNKGKLGANAILGCSMAISKAAAAAKGVPLY 130

Query: 66  RYI 68
           RY+
Sbjct: 131 RYL 133


>d1u0sa_ d.58.24.1 (A:) CheY-binding domain of CheA {Thermotoga
          maritima [TaxId: 2336]}
          Length = 86

 Score = 23.1 bits (50), Expect = 2.7
 Identities = 7/29 (24%), Positives = 14/29 (48%)

Query: 21 NEQFFLDYTLTNLSKNKSQFIKNALLSVS 49
           E+F  +  L  +S    + +  AL S++
Sbjct: 48 EEKFENEVELFVISPVDLEKLSEALSSIA 76


>d1kzyc2 c.15.1.4 (C:1867-1972) 53BP1 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 106

 Score = 22.4 bits (48), Expect = 4.8
 Identities = 5/24 (20%), Positives = 12/24 (50%)

Query: 6   LLESEISEAIMGFSSNEQFFLDYT 29
           +++  I    +GF  + ++  DY 
Sbjct: 81  VIQCLIVGERIGFKQHPKYKHDYV 104


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.130    0.335 

Gapped
Lambda     K      H
   0.267   0.0572    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 208,717
Number of extensions: 6361
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 10
Length of query: 68
Length of database: 2,407,596
Length adjustment: 37
Effective length of query: 31
Effective length of database: 1,899,586
Effective search space: 58887166
Effective search space used: 58887166
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.2 bits)