BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15212
(329 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|445494814|ref|ZP_21461858.1| ribosomal RNA small subunit methyltransferase B [Janthinobacterium
sp. HH01]
gi|444790975|gb|ELX12522.1| ribosomal RNA small subunit methyltransferase B [Janthinobacterium
sp. HH01]
Length = 467
Score = 356 bits (914), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 163/326 (50%), Positives = 220/326 (67%), Gaps = 21/326 (6%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
M+NA+LR FLR++ + ++ + + WNYP WWI+ K +P W+ +L G+ P
Sbjct: 161 MVNAVLRRFLRERKALLETALLQPL-AKWNYPQWWIDAAKAAWPQ--DWQGVLAAGNGAP 217
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLRIN RKTT+ +Y L+ +G+ T IGP A++L P+ ++ IP F +G S+QDA
Sbjct: 218 PLTLRINARKTTMSAYLATLEAAGMAATQIGPYAVRLAKPVGVTLIPGFADGLVSVQDAG 277
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAAPLLD+R GM VLDAC+APGGKTCH+LE+AD + ++D + RL + ENL+RL
Sbjct: 278 AQLAAPLLDVRDGMRVLDACAAPGGKTCHILELADASVTALDADAKRLARVGENLERLGQ 337
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
+ATL +D ++ K FDRILAD+PCT SG+VRR+PDI W
Sbjct: 338 QATLRTADAQSAG-----------------WWDGKLFDRILADVPCTASGIVRRHPDIRW 380
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRRK D +L+ S KIL+NLW+ML PGGKLLFVTCSLW +ESE QA F+ ++ ++RL
Sbjct: 381 LRRKGDTLQLATLSSKILDNLWQMLAPGGKLLFVTCSLWPQESEAQAAAFAVRNQ-AVRL 439
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQK 326
++PGQLLP QD+DG FY+LFQK
Sbjct: 440 DAPGQLLPAGGAGQDHDGLFYALFQK 465
>gi|395760186|ref|ZP_10440855.1| tRNA and rRNA cytosine-C5-methylases [Janthinobacterium lividum
PAMC 25724]
Length = 475
Score = 347 bits (890), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 160/326 (49%), Positives = 225/326 (69%), Gaps = 21/326 (6%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
M+NA+LR FLR++ + ++ + + WNYP WWI+ +++ YP W+ IL G+ P
Sbjct: 168 MVNAVLRRFLRERKSLLEAALQQ-PVAQWNYPQWWIDSLRLAYPR--DWQAILTAGNAVP 224
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N+RK+TL +Y +L ++G+ +GP A++L PI ++ IP F G S+QDA
Sbjct: 225 PLTLRVNRRKSTLEAYLAVLAEAGIAARQVGPFAVRLDKPIGVALIPGFEQGVVSVQDAG 284
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAAPLLD++ GM VLDAC+APGGKTCH+LE+AD+++ ++D + RL I+ENL+RL L
Sbjct: 285 AQLAAPLLDLQDGMRVLDACAAPGGKTCHILELADVQVTAIDADAKRLPRIAENLERLGL 344
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A+L D ++ + +DRILAD+PCT SG+VRR+PDI W
Sbjct: 345 DASLKAQDAQSSA-----------------WWDGQQYDRILADVPCTASGIVRRHPDIRW 387
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRRK D +L+ S KIL+NLW+ML+P GKLLFVTCSLW +ESE QA F+ + ++ RL
Sbjct: 388 LRRKGDAFQLATLSAKILDNLWQMLRPDGKLLFVTCSLWPQESEAQAAAFAVRN-NATRL 446
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQK 326
+PGQLLPT + +QD+DG FY+LFQK
Sbjct: 447 TAPGQLLPTGSAEQDHDGLFYALFQK 472
>gi|427402481|ref|ZP_18893478.1| ribosomal RNA small subunit methyltransferase B [Massilia timonae
CCUG 45783]
gi|425718287|gb|EKU81234.1| ribosomal RNA small subunit methyltransferase B [Massilia timonae
CCUG 45783]
Length = 553
Score = 331 bits (849), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 158/327 (48%), Positives = 224/327 (68%), Gaps = 21/327 (6%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
M+NA+LR FLR++ E ++ + +NYP WWI+ ++ YP W+ +L+ G+ P
Sbjct: 246 MVNAVLRRFLRER-EALVAEALREPLARFNYPQWWIDTMRAAYPR--DWEAVLEAGNVHP 302
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N+RKT + +Y L ++GL+ +G A++L I++++IP F +G S+QDA
Sbjct: 303 PLTLRVNRRKTDVSAYLHALNEAGLQAEQVGLTAVRLAQAINVAQIPGFADGVVSVQDAG 362
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAAPLLD++ GM VLDAC+APGGK+ H+LE AD++L SVD + +RL + +NL RL L
Sbjct: 363 AQLAAPLLDLKDGMRVLDACAAPGGKSGHILETADVQLTSVDADPARLARVGDNLGRLGL 422
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
ATL+ +D + ++ + +DRILAD+PCT SG+VRR+PDI W
Sbjct: 423 DATLLAADAGSRD-----------------WWDGRQYDRILADVPCTASGIVRRHPDIRW 465
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRRK+D +L+ S KIL+NLW+ML P GKLLFVTCSLW +ESE QA F+ H D++RL
Sbjct: 466 LRRKSDTSQLATLSSKILDNLWQMLLPDGKLLFVTCSLWPQESEAQAAAFAARH-DAVRL 524
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQKR 327
++PGQLLP QD+DG FY+LFQK+
Sbjct: 525 DAPGQLLPLGGAGQDHDGLFYALFQKK 551
>gi|152981119|ref|YP_001351848.1| tRNA and rRNA cytosine-C5-methylases [Janthinobacterium sp.
Marseille]
gi|151281196|gb|ABR89606.1| tRNA and rRNA cytosine-C5-methylases [Janthinobacterium sp.
Marseille]
Length = 437
Score = 325 bits (832), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 168/326 (51%), Positives = 224/326 (68%), Gaps = 21/326 (6%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
M+NA+LR FLR++ + KS + WNYP WWI++++ YP W+ IL+ G+ P
Sbjct: 130 MVNAVLRRFLRERDALLKSA-GGTQFARWNYPDWWIDRMRSAYPQ--NWQAILEAGNAAP 186
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N+RKTT+ +Y LL + + T IGP A+KL P + +IP F G S+QDAA
Sbjct: 187 PLTLRVNRRKTTVDAYLALLAEQSVAATRIGPDAVKLAQPTPVGQIPGFNEGLVSVQDAA 246
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAA LLD+R GM VLDAC+APGGK+ H+LE AD++LI++DN R+ I+ENL+RL L
Sbjct: 247 AQLAASLLDLRDGMRVLDACAAPGGKSGHILESADVELIALDNEARRMPRIAENLERLQL 306
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
+ATL+ D S + ++ K FDRILAD+PCT SG+VRR+PDI W
Sbjct: 307 QATLLTGDASATD-----------------WWDGKPFDRILADVPCTASGIVRRHPDIRW 349
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRRK D +L+ S IL+NLW+ML+P GKLLFVTCSLW +ESE QA F+ + ++ RL
Sbjct: 350 LRRKGDTTQLAAISATILDNLWQMLQPDGKLLFVTCSLWPQESEAQAAAFAVRN-NATRL 408
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQK 326
+PGQLLPT N + D+DG FY+LFQK
Sbjct: 409 PAPGQLLPTANAESDHDGLFYALFQK 434
>gi|399021791|ref|ZP_10723882.1| ribosomal RNA small subunit methyltransferase RsmB [Herbaspirillum
sp. CF444]
gi|398090570|gb|EJL81038.1| ribosomal RNA small subunit methyltransferase RsmB [Herbaspirillum
sp. CF444]
Length = 438
Score = 325 bits (832), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 165/326 (50%), Positives = 225/326 (69%), Gaps = 17/326 (5%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NAILR FLR++ + ++ WNYP WWI+++K YP+ QW++IL G+ P
Sbjct: 127 VVNAILRRFLRERATLLP-QVEKTPAGAWNYPTWWIDRLKAAYPD--QWQDILRAGNAPP 183
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N+RKTT+ +Y + L G+ +GP A++L P +++IP F +G S+QDAA
Sbjct: 184 PLTLRVNRRKTTVAAYLQTLTAQGIGARQVGPDAVRLDKPAPVAQIPGFTDGLASVQDAA 243
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAAPLLD+ GMYVLDAC+APGGKT HLLE ADI L+++D++ RL I ENL+RL L
Sbjct: 244 AQLAAPLLDVHDGMYVLDACAAPGGKTGHLLECADIDLVALDHDPKRLRRIEENLQRLQL 303
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A L D + ++ K FDRILAD+PCT SG+VRR+PDI W
Sbjct: 304 SAVLKAGDA-------------RSDGAGDGWWDGKQFDRILADVPCTASGIVRRHPDIRW 350
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRRK D +L+ S +IL+NLW+MLKP GKLL VTCSLW +ESE+QA F++ ++ ++RL
Sbjct: 351 LRRKTDTTQLATLSSQILDNLWQMLKPDGKLLLVTCSLWPQESEDQAAAFAQRNQ-AVRL 409
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQK 326
+PGQLLPT + + D+DG FY+LFQK
Sbjct: 410 PAPGQLLPTASAETDHDGLFYALFQK 435
>gi|300309418|ref|YP_003773510.1| RNA methyltransferase [Herbaspirillum seropedicae SmR1]
gi|300072203|gb|ADJ61602.1| RNA methyltransferase (SUN protein) protein [Herbaspirillum
seropedicae SmR1]
Length = 424
Score = 322 bits (826), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 161/326 (49%), Positives = 223/326 (68%), Gaps = 21/326 (6%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NAILR LR++ + + WNYP WWI+++K YP QW+ IL G++ P
Sbjct: 117 VVNAILRRLLRERATLMP-QATKTPPGTWNYPTWWIDRLKAAYPE--QWQAILHAGNQAP 173
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N+R+TT+ Y L+++G+ +GP A++LH P+ + ++P F G S+QDAA
Sbjct: 174 PLTLRVNRRRTTVAQYLDTLQQAGMAARQVGPAAVRLHRPVPVQQLPGFAEGVVSVQDAA 233
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAAPLLD+ GM VLDAC+APGGKT HLLE+AD+ L ++D++ RL I+ENL RL L
Sbjct: 234 AQLAAPLLDVADGMRVLDACAAPGGKTGHLLELADLDLQALDHDTRRLQRIAENLDRLQL 293
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
KA L D + ++ + FDRILAD+PCT SG+VRR+PDI W
Sbjct: 294 KARLTTGDARADD-----------------WWDGQPFDRILADVPCTASGIVRRHPDIRW 336
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRRK D +L+ S +IL+ LW+ML+P GKLL VTCSLW +ESE+QA+ F++ H ++IRL
Sbjct: 337 LRRKTDTAQLATLSTQILDKLWQMLRPDGKLLLVTCSLWPQESEQQAVAFAQKH-NAIRL 395
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQK 326
+PGQLLPT ++ D+DG FY+LFQK
Sbjct: 396 PAPGQLLPTASETADHDGLFYALFQK 421
>gi|134093422|ref|YP_001098497.1| S-adenosyl-L-methionine-dependent RNA methyltransferase
[Herminiimonas arsenicoxydans]
Length = 449
Score = 317 bits (813), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 166/326 (50%), Positives = 229/326 (70%), Gaps = 21/326 (6%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
M+NAILR FLR++ + KS + WNYP WWI++++ YP W+ IL+ G+ P
Sbjct: 142 MVNAILRRFLRERDALMKSAA-GTQLARWNYPDWWIDRMRSAYPR--DWQAILEAGNAAP 198
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+NQRK ++ Y LL + G+ T+IGP+A++L P +++IP F +G S+QDAA
Sbjct: 199 PLTLRVNQRKISVSDYLALLAQQGIAATLIGPVAVRLAQPTPVNQIPGFSDGLVSVQDAA 258
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAAPLLD+R GM VLDAC+APGGK+ H+LE A ++L ++D++ RL I+ENL+RL L
Sbjct: 259 AQLAAPLLDLRDGMRVLDACAAPGGKSGHILETAVVELTALDSDERRLPRITENLQRLQL 318
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A+L++ D T N ++ K F+RILAD+PCT SG+VRR+PDI W
Sbjct: 319 NASLLVGD---------------ATGN--SWWDGKPFERILADVPCTASGIVRRHPDIRW 361
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRRK+D +L+ S +IL+NLW+ML+ GKLLFVTCSLW +ESE QA F+ ++ +IRL
Sbjct: 362 LRRKSDAVQLAAISAQILDNLWQMLQADGKLLFVTCSLWPQESEAQAAAFAVRNR-AIRL 420
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQK 326
+PGQLLPT N + D+DG FY+LFQK
Sbjct: 421 PAPGQLLPTANAEDDHDGLFYALFQK 446
>gi|193222202|emb|CAL60368.2| putative 16S rRNA methyltransferase B [Herminiimonas
arsenicoxydans]
Length = 453
Score = 317 bits (812), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 166/326 (50%), Positives = 229/326 (70%), Gaps = 21/326 (6%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
M+NAILR FLR++ + KS + WNYP WWI++++ YP W+ IL+ G+ P
Sbjct: 146 MVNAILRRFLRERDALMKSAA-GTQLARWNYPDWWIDRMRSAYPR--DWQAILEAGNAAP 202
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+NQRK ++ Y LL + G+ T+IGP+A++L P +++IP F +G S+QDAA
Sbjct: 203 PLTLRVNQRKISVSDYLALLAQQGIAATLIGPVAVRLAQPTPVNQIPGFSDGLVSVQDAA 262
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAAPLLD+R GM VLDAC+APGGK+ H+LE A ++L ++D++ RL I+ENL+RL L
Sbjct: 263 AQLAAPLLDLRDGMRVLDACAAPGGKSGHILETAVVELTALDSDERRLPRITENLQRLQL 322
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A+L++ D T N ++ K F+RILAD+PCT SG+VRR+PDI W
Sbjct: 323 NASLLVGD---------------ATGN--SWWDGKPFERILADVPCTASGIVRRHPDIRW 365
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRRK+D +L+ S +IL+NLW+ML+ GKLLFVTCSLW +ESE QA F+ ++ +IRL
Sbjct: 366 LRRKSDAVQLAAISAQILDNLWQMLQADGKLLFVTCSLWPQESEAQAAAFAVRNR-AIRL 424
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQK 326
+PGQLLPT N + D+DG FY+LFQK
Sbjct: 425 PAPGQLLPTANAEDDHDGLFYALFQK 450
>gi|323524427|ref|YP_004226580.1| sun protein [Burkholderia sp. CCGE1001]
gi|323381429|gb|ADX53520.1| sun protein [Burkholderia sp. CCGE1001]
Length = 479
Score = 313 bits (803), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 149/348 (42%), Positives = 228/348 (65%), Gaps = 38/348 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR FLR++ ++ ++ ++WNYP WWI+ V+ +P+ W+++L G+ +
Sbjct: 149 LVNAVLRNFLRER-DVLLTEAQADEVAHWNYPTWWIDAVRRAWPD--AWQDVLAAGNTQG 205
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N R +T+ +Y +L++ + + +G A+KL TP+ + +IP F G S+QDA
Sbjct: 206 PLTLRVNARHSTVEAYLHVLEQHHIAASKVGEYAVKLATPMPVDRIPGFNEGVVSVQDAG 265
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAA LL +R GM VLDAC+APGGKT HLLE+A+++L+++++++SR I ENL+RL L
Sbjct: 266 AQLAAQLLGVRDGMRVLDACAAPGGKTGHLLELANLQLVALESDVSRARRIGENLQRLKL 325
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
+A + + D + K + DI++ FDRILAD+PC+ SG+VRR+PDI W
Sbjct: 326 EAEVRIGDAGAPS--KWHDDIDQP------------FDRILADVPCSASGIVRRHPDIRW 371
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR +DI L + +IL+ LW ++KPGG+LL+VTCS++ EE E QA F H+D++RL
Sbjct: 372 LRRASDIPALVEAQRRILDALWPLVKPGGELLYVTCSIFPEEGELQAQWFGNKHQDAVRL 431
Query: 301 NSPGQLLPTVNKK---------------------QDYDGFFYSLFQKR 327
++PGQLLP+V + D+DGFFY+ FQKR
Sbjct: 432 DAPGQLLPSVARAPADPSAGSHAGEFAERSAGTNSDHDGFFYARFQKR 479
>gi|407711817|ref|YP_006832382.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
phenoliruptrix BR3459a]
gi|407234001|gb|AFT84200.1| Ribosomal RNA small subunit methyltransferase B [Burkholderia
phenoliruptrix BR3459a]
Length = 457
Score = 313 bits (802), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 149/348 (42%), Positives = 226/348 (64%), Gaps = 38/348 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR FLR++ + + ++WNYP WWI+ V+ +P+ W+++L G+ +
Sbjct: 127 LVNAVLRNFLRERDALLTEAQAD-EVAHWNYPTWWIDAVRRAWPD--AWQDVLAAGNTQG 183
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N R +T+ +Y +L++ + + +G A+KL TP+ + +IP F G S+QDA
Sbjct: 184 PLTLRVNARHSTVEAYLHVLEQHHIAASKVGEYAVKLATPMPVDRIPGFNEGVVSVQDAG 243
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAA LL +R GM VLDAC+APGGKT HLLE+A+++L+++++++SR I ENL+RL L
Sbjct: 244 AQLAAQLLGVRDGMRVLDACAAPGGKTGHLLELANLQLVALESDVSRARRIGENLQRLKL 303
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
+A + + D + K + DI++ FDRILAD+PC+ SG+VRR+PDI W
Sbjct: 304 EAEVRIGDAGAPS--KWHDDIDQP------------FDRILADVPCSASGIVRRHPDIRW 349
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR +DI L + +IL+ LW ++KPGG+LL+VTCS++ EE E QA F H+D++RL
Sbjct: 350 LRRASDIPALVEEQRRILDALWPLVKPGGELLYVTCSIFPEEGELQAQWFGNKHQDAVRL 409
Query: 301 NSPGQLLPTVNKK---------------------QDYDGFFYSLFQKR 327
++PGQLLP+V + D+DGFFY+ FQKR
Sbjct: 410 DAPGQLLPSVARAPADPSAGSHAGEFAEPSAGTNSDHDGFFYARFQKR 457
>gi|409408653|ref|ZP_11257088.1| RNA methyltransferase [Herbaspirillum sp. GW103]
gi|386431975|gb|EIJ44803.1| RNA methyltransferase [Herbaspirillum sp. GW103]
Length = 439
Score = 312 bits (800), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 163/327 (49%), Positives = 222/327 (67%), Gaps = 23/327 (7%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NAILR FLR++ + + + WNYP WWI+++K YP QW+ IL G++ P
Sbjct: 132 VVNAILRRFLRERATLM-PQAGKTPPATWNYPTWWIDRLKAAYPE--QWQAILHAGNQPP 188
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N+R+ ++ Y L+++G+ IGP A++L P+ + +IP F G S+QDAA
Sbjct: 189 PLTLRVNRRRASVEQYLATLQQAGIGARAIGPCAVRLDKPMPVQQIPGFAEGVVSVQDAA 248
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAAPLLD+ GM VLDAC+APGGKT HLLE+AD+ L ++D++ RL I+ENL RL L
Sbjct: 249 AQLAAPLLDVADGMRVLDACAAPGGKTGHLLELADLDLQALDHDPRRLQRIAENLDRLQL 308
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
KA L+ D + ++ + +DRILAD+PCT SG+VRR+PDI W
Sbjct: 309 KARLLTGDARDDS-----------------WWDGQGYDRILADVPCTASGIVRRHPDIRW 351
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFS-KNHKDSIR 299
LRRK D +L+ S +IL+ LW+ML+P GKLL VTCSLW +ESE+QAI F+ KNH +IR
Sbjct: 352 LRRKTDTVQLATLSAQILDKLWQMLRPDGKLLLVTCSLWPQESEQQAIAFAQKNH--AIR 409
Query: 300 LNSPGQLLPTVNKKQDYDGFFYSLFQK 326
L +PGQLLPT D+DG FY+LFQK
Sbjct: 410 LPAPGQLLPTARADADHDGLFYALFQK 436
>gi|307728146|ref|YP_003905370.1| sun protein [Burkholderia sp. CCGE1003]
gi|307582681|gb|ADN56079.1| sun protein [Burkholderia sp. CCGE1003]
Length = 479
Score = 312 bits (800), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 150/348 (43%), Positives = 224/348 (64%), Gaps = 38/348 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR FLR++ ++ + + WNYP WWI+ V+ +P W+++L G+ +
Sbjct: 149 LVNAVLRNFLREREQLLTEAQSD-EVARWNYPTWWIDAVRRAWPE--AWQDVLAAGNTQG 205
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N R +T+ +Y +LL++ + + G A+KL TP+ + +IP F G S+QDA
Sbjct: 206 PLTLRVNARHSTVEAYLQLLEQHHIAASKAGEHAVKLATPMPVDRIPGFNEGVVSVQDAG 265
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAA LL +R GM VLDAC+APGGKT HLLE+A+++L++++++++R I ENL+RL L
Sbjct: 266 AQLAAQLLGVRDGMRVLDACAAPGGKTGHLLELANLQLVALESDVARARRIGENLQRLKL 325
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
+A + + D + K + DI++ FDRILAD+PC+ SG+VRR+PDI W
Sbjct: 326 EAEVRIGDAGAPS--KWHDDIDQP------------FDRILADVPCSASGIVRRHPDIRW 371
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR +DI L +IL LW ++KPGG+LL+VTCS++ EE E QA F NH+D++RL
Sbjct: 372 LRRASDIPALVDEQRRILGALWPLVKPGGELLYVTCSIFPEEGELQAQWFGNNHQDAVRL 431
Query: 301 NSPGQLLPTVNKK---------------------QDYDGFFYSLFQKR 327
++PGQLLP+V + D+DGFFY+ FQKR
Sbjct: 432 DAPGQLLPSVARAPADTSAGSHAGGFADTSAGANSDHDGFFYARFQKR 479
>gi|187922320|ref|YP_001893962.1| sun protein [Burkholderia phytofirmans PsJN]
gi|187713514|gb|ACD14738.1| sun protein [Burkholderia phytofirmans PsJN]
Length = 457
Score = 311 bits (798), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 151/348 (43%), Positives = 223/348 (64%), Gaps = 38/348 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR FLR++ + K + + WNYP WWI+ VK +P+ W+++L G+ +
Sbjct: 127 LVNAVLRSFLREREALLKDAQDD-EVARWNYPAWWIDAVKRAWPD--AWQSVLAAGNTQG 183
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N R +T+ +Y + L+ + + +G A+KL TP+ + +IP F +G S+QDA
Sbjct: 184 PLTLRVNARHSTVDAYLQTLQNHHIAASKVGDYAVKLATPMPVDRIPGFNDGVVSVQDAG 243
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAAPLLD R GM VLDAC+APGGKT HLLE+A+++L++++++ SR I ENL+RL L
Sbjct: 244 AQLAAPLLDARDGMRVLDACAAPGGKTGHLLELANLQLVALESDASRARRIGENLQRLKL 303
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
+A + + D K + DI++ FDRILAD+PC+ SG+VRR+PDI W
Sbjct: 304 EAEVRIGDAGAP--AKWHDDIDQP------------FDRILADVPCSASGIVRRHPDIRW 349
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR +DI L +IL+ LW ++KPGG+LL+VTCS++ EE E QA F ++D++RL
Sbjct: 350 LRRASDIPALVTEQRRILDALWPLVKPGGELLYVTCSIFPEEGELQAQWFGNKYQDAVRL 409
Query: 301 NSPGQLLPTVNKK---------------------QDYDGFFYSLFQKR 327
++PGQLLP+ + D+DGFFY+ FQKR
Sbjct: 410 DAPGQLLPSAARAPADTSAGSHAGQPAEDSAGANSDHDGFFYARFQKR 457
>gi|295675129|ref|YP_003603653.1| sun protein [Burkholderia sp. CCGE1002]
gi|295434972|gb|ADG14142.1| sun protein [Burkholderia sp. CCGE1002]
Length = 479
Score = 311 bits (797), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 150/348 (43%), Positives = 223/348 (64%), Gaps = 38/348 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR FLR++ + + + ++WNYP WWI+ VK T+P W+++L G+ +
Sbjct: 149 LVNAVLRNFLRERDTLLAAVQAD-EVAHWNYPAWWIDAVKRTWPE--AWQSVLAAGNTQG 205
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N R +T+ +Y + L++ + G A+ L TP+ + +IP F G S+QDA
Sbjct: 206 PLTLRVNARHSTVDAYLQELQRQQITARKAGEHAVTLATPMPVERIPGFNEGVVSVQDAG 265
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAA LL +R GM VLDAC+APGGKT HLLE+A+I+L++++++ SR I ENL+RL L
Sbjct: 266 AQLAAQLLGVRDGMRVLDACAAPGGKTGHLLELANIQLVALESDASRARRIGENLRRLKL 325
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
+A + + D N + + D+++ FDRILAD+PC+ SG+VRR+PDI W
Sbjct: 326 EAEVRIGDAG--NPAQWHDDLDQP------------FDRILADVPCSASGIVRRHPDIRW 371
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR++DI L +IL+ LW ++KPGG+LL+VTCS++ EE E QA F H+D++RL
Sbjct: 372 LRRQSDIAALVSEQRRILDALWPLVKPGGELLYVTCSIFPEEGELQAQWFGNQHQDAVRL 431
Query: 301 NSPGQLLPTVNKK---------------------QDYDGFFYSLFQKR 327
++PGQLLP+V + D+DGFFY+ FQKR
Sbjct: 432 DAPGQLLPSVARAPADSSAGSHAGRPAEFSTGTNSDHDGFFYARFQKR 479
>gi|209515830|ref|ZP_03264692.1| sun protein [Burkholderia sp. H160]
gi|209503678|gb|EEA03672.1| sun protein [Burkholderia sp. H160]
Length = 479
Score = 310 bits (794), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 149/348 (42%), Positives = 221/348 (63%), Gaps = 38/348 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR FLR++ + + + + WNYP WWI+ VK +P W+++LD G+ +
Sbjct: 149 LVNAVLRNFLRERDTLLAAVQAD-EVARWNYPAWWIDAVKRAWPE--AWQSVLDAGNTQG 205
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N R +T+ +Y ++L++ + T G A+ L T + + +IP F G S+QDA
Sbjct: 206 PLTLRVNARHSTVDAYLQVLQRQQIAATKAGEHAVTLATAMPVERIPGFSEGIVSVQDAG 265
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAA LL +R GM VLDAC+APGGKT HLLE+A+I+L++++++ SR I ENL+RL L
Sbjct: 266 AQLAAQLLGVRDGMRVLDACAAPGGKTGHLLELANIQLVALESDASRARRIGENLRRLKL 325
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
+A + + D + + D+++ FDRILAD+PC+ SG+VRR+PDI W
Sbjct: 326 EAEVRIGDAGAP--AQWHDDLDQP------------FDRILADVPCSASGIVRRHPDIRW 371
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR++DI L +IL+ LW ++KPGG LL+VTCS++ EE E QA F H+D++RL
Sbjct: 372 LRRQSDIAALVAEQRRILDALWPLVKPGGVLLYVTCSIFPEEGEMQAQWFGNQHQDAVRL 431
Query: 301 NSPGQLLPTVNKK---------------------QDYDGFFYSLFQKR 327
++PGQLLP+V + D+DGFFY+ FQKR
Sbjct: 432 DAPGQLLPSVARAPADPSAGSHAGQPTEFSAGANSDHDGFFYARFQKR 479
>gi|91781434|ref|YP_556640.1| Fmu, rRNA SAM-dependent methyltransferase [Burkholderia xenovorans
LB400]
gi|91685388|gb|ABE28588.1| Fmu, rRNA SAM-dependent methyltransferase [Burkholderia xenovorans
LB400]
Length = 457
Score = 309 bits (791), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 151/348 (43%), Positives = 222/348 (63%), Gaps = 38/348 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR FLR++ E S + WNYP WWI+ VK +P+ W+++L G+ +
Sbjct: 127 LVNAVLRTFLRER-ETLLSAAQADEVARWNYPAWWIDAVKRAWPD--AWQSVLAAGNTQG 183
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N R++T+ +Y +LL+ + + G A+KL TP+ + +IP F +G S+QDA
Sbjct: 184 PLTLRVNARRSTVDAYLQLLQNQHIAASKAGDYAVKLATPMPVDRIPGFTDGVVSVQDAG 243
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAA LL + GM VLDAC+APGGKT HLLE+A+++L++++++ SR I ENL+RL L
Sbjct: 244 AQLAAQLLGVHDGMRVLDACAAPGGKTGHLLELANLQLVALESDASRARRIGENLQRLKL 303
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
+A + + D K + DI++ FDRILAD+PC+ SG+VRR+PDI W
Sbjct: 304 EAEVRIGDAG--TPAKWHDDIDQP------------FDRILADVPCSASGIVRRHPDIRW 349
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR +DI L +IL+ LW ++KPGG+LL+VTCS++ EE E QA F ++D++RL
Sbjct: 350 LRRASDIPALVAEQRRILDALWPLVKPGGELLYVTCSIFPEEGELQAQWFGNKYQDAVRL 409
Query: 301 NSPGQLLPTVNKK---------------------QDYDGFFYSLFQKR 327
++PGQLLP+V + D+DGFFY+ FQKR
Sbjct: 410 DAPGQLLPSVARAPADASAGSHAGQSAEDSAGANSDHDGFFYARFQKR 457
>gi|385207341|ref|ZP_10034209.1| ribosomal RNA small subunit methyltransferase RsmB [Burkholderia
sp. Ch1-1]
gi|385179679|gb|EIF28955.1| ribosomal RNA small subunit methyltransferase RsmB [Burkholderia
sp. Ch1-1]
Length = 457
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 151/348 (43%), Positives = 222/348 (63%), Gaps = 38/348 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR FLR++ E S + WNYP WWI+ VK +P+ W+++L G +
Sbjct: 127 LVNAVLRTFLRER-EALLSAAQTDEVACWNYPAWWIDAVKRAWPD--AWQSVLAAGDTQG 183
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N R++T+ +Y ++L+ + + G A+KL TP+ + +IP F +G S+QDA
Sbjct: 184 PLTLRVNARRSTVDAYLQVLQNHHIAASKGGDYAVKLATPMPVDRIPGFNDGVVSVQDAG 243
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAA LL +R GM VLDAC+APGGKT HLLE+AD++L++++++ +R I ENL+RL L
Sbjct: 244 AQLAAQLLGVRDGMRVLDACAAPGGKTGHLLELADLQLVALESDAARARRIGENLQRLKL 303
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
+A + + D K + DI++ FDRILAD+PC+ SG+VRR+PDI W
Sbjct: 304 EAEVRIGDAGAP--AKWHDDIDQP------------FDRILADVPCSASGIVRRHPDIRW 349
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR +DI L +IL+ LW ++KPGG+LL+VTCS++ EE E QA F ++D++RL
Sbjct: 350 LRRASDIPALVAEQRRILDALWPLVKPGGELLYVTCSIFPEEGELQAQWFGNKYQDAVRL 409
Query: 301 NSPGQLLPTVNKK---------------------QDYDGFFYSLFQKR 327
++PGQLLP+V + D+DGFFY+ FQKR
Sbjct: 410 DAPGQLLPSVARAPADTSAGSHAGQSAEDSAGANSDHDGFFYARFQKR 457
>gi|398836142|ref|ZP_10593489.1| ribosomal RNA small subunit methyltransferase RsmB [Herbaspirillum
sp. YR522]
gi|398213700|gb|EJN00292.1| ribosomal RNA small subunit methyltransferase RsmB [Herbaspirillum
sp. YR522]
Length = 445
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 157/326 (48%), Positives = 225/326 (69%), Gaps = 15/326 (4%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NAILR FLR++ + + WNYP WWI++++ YP QW+ IL G+++P
Sbjct: 132 VVNAILRRFLRERVSLMP-QAVKTPPGTWNYPTWWIDRLRAAYPE--QWQAILHAGNQEP 188
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N+R++++ Y L +G+ +GP+A++L + + +IP F +G S+QDAA
Sbjct: 189 PLTLRVNRRRSSVEQYIATLAGAGMAARQVGPVAVRLERAVPVQQIPGFADGVVSVQDAA 248
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAAPLLD+R GM VLDAC+APGGKT HLLE ADI+L ++D++ RL ISENL+RL
Sbjct: 249 AQLAAPLLDVRDGMRVLDACAAPGGKTGHLLECADIELDALDHDPRRLARISENLQRLRS 308
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
+A L+ D L ++ +++DRILAD+PCT SG+VRR+PDI W
Sbjct: 309 QARLLAGDARDAGLAP-----------GAGWWDGRHYDRILADVPCTASGIVRRHPDIRW 357
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRRK D ++L+ S +IL+NLW+ML+P GKLL VTCSLW ES++QA F++ + ++ RL
Sbjct: 358 LRRKTDAEQLATLSAQILDNLWQMLRPDGKLLLVTCSLWPLESQQQADAFAQRN-NATRL 416
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQK 326
+PGQLLPT + + D+DG FY+LFQK
Sbjct: 417 PAPGQLLPTASAETDHDGLFYALFQK 442
>gi|186474810|ref|YP_001856280.1| sun protein [Burkholderia phymatum STM815]
gi|184191269|gb|ACC69234.1| sun protein [Burkholderia phymatum STM815]
Length = 453
Score = 308 bits (789), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 149/344 (43%), Positives = 214/344 (62%), Gaps = 34/344 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+ NA+LR FLR++ E ++WNYP+WWI+ V+ +P+ W++IL G+ +
Sbjct: 127 LTNAVLRNFLRER-ETLLGDAQKDAVAHWNYPVWWIDAVRNAWPD--AWQDILTAGNNQG 183
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N R+ T+ +Y + L++ + T G A++L TP+ + +IP F G S+QDA
Sbjct: 184 PLTLRVNARRATVDAYLQTLREHQISATQAGDQAVRLETPMPVDRIPGFNEGVASVQDAG 243
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAA L +R GM VLDAC+APGGKT HLLE+ADI LI+++++ +R I ENL+RL L
Sbjct: 244 AQLAAQWLGVRDGMRVLDACAAPGGKTGHLLELADIDLIALESDATRARRIGENLQRLGL 303
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A + + D + ++ + FDRILAD+PC+ SG+VRR+PDI W
Sbjct: 304 SAHVRVGDAG--------------SPEQWHDAADAPFDRILADVPCSASGIVRRHPDIRW 349
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR +DI L + +IL LW ++KPGG+LL+VTCS++ EE E QA F H D++RL
Sbjct: 350 LRRASDIPVLVEEQRRILEALWTLVKPGGELLYVTCSIFPEEGELQAQWFGNRHADAVRL 409
Query: 301 NSPGQLLPTVNKKQ-----------------DYDGFFYSLFQKR 327
++PGQLLP V + D+DGFFY+ FQKR
Sbjct: 410 DAPGQLLPAVARAPADVSAGSRAGQSTGSSLDHDGFFYARFQKR 453
>gi|107024054|ref|YP_622381.1| sun protein [Burkholderia cenocepacia AU 1054]
gi|116691141|ref|YP_836764.1| sun protein [Burkholderia cenocepacia HI2424]
gi|105894243|gb|ABF77408.1| sun protein [Burkholderia cenocepacia AU 1054]
gi|116649230|gb|ABK09871.1| sun protein [Burkholderia cenocepacia HI2424]
Length = 463
Score = 308 bits (789), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 145/337 (43%), Positives = 215/337 (63%), Gaps = 29/337 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
M+NA+LR FLR++ + + M + + WNY WW++ VK +P W+ IL G ++
Sbjct: 146 MVNAVLRRFLRER-DALVAAMQDEPVARWNYRAWWVDAVKRAWPE--AWQAILAAGERQG 202
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N R+ ++ +Y L+ SG++ T IG A++L + + + +IP F +G S+QDA
Sbjct: 203 PLTLRVNARRASVDAYLDTLRASGIDATAIGRHAVRLASALPVERIPGFADGVVSVQDAG 262
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAA LD R GM VLDAC+APGGKT H+LE+AD ++++++++ +R I ENL RL+L
Sbjct: 263 AQLAAEWLDARDGMRVLDACAAPGGKTGHILELADAEVVALESDATRAARIGENLVRLSL 322
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A + + D +Y + FDRILAD+PC+ SG+VRR+PDI W
Sbjct: 323 AANVCVGDAGASGT----------------WYDGRPFDRILADVPCSASGIVRRHPDIRW 366
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR+ DI L +IL+ LW ++KPGG+LL+VTCS++ EE E QA F +D++RL
Sbjct: 367 LRREADIPALVAEQRRILSALWPLVKPGGELLYVTCSIFPEEGELQARWFEAACEDAVRL 426
Query: 301 NSPGQLLP----------TVNKKQDYDGFFYSLFQKR 327
++PGQLLP +++ D+DGFFY+ FQKR
Sbjct: 427 DAPGQLLPGSVQGRAAAGALDQNTDHDGFFYARFQKR 463
>gi|402565113|ref|YP_006614458.1| Ribosomal RNA small subunit methyltransferase B [Burkholderia
cepacia GG4]
gi|402246310|gb|AFQ46764.1| Ribosomal RNA small subunit methyltransferase B [Burkholderia
cepacia GG4]
Length = 462
Score = 306 bits (785), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 144/336 (42%), Positives = 213/336 (63%), Gaps = 28/336 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
M+NA+LR FLR++ + + M + WNY WW++ VK +P+ W+ +L G ++
Sbjct: 146 MVNAVLRRFLRER-DALVAAMQGDPVARWNYRTWWVDAVKRAWPD--AWQAMLAAGERQG 202
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N R+ T+ +Y L+ SG+E T IG A++L + + + +IP F +G S+QDA
Sbjct: 203 PLTLRVNARRATVDAYLDTLRASGIEATAIGRHAVRLASALPVDRIPGFADGVVSVQDAG 262
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAA L +R GM VLDAC+APGGKT H+LE+AD +++++++ +R I ENL RL+L
Sbjct: 263 AQLAAEWLGVRDGMRVLDACAAPGGKTGHILELADADVVALESDAARAARIGENLARLSL 322
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A + + D + +Y + FDRILAD+PC+ SG+VRR+PDI W
Sbjct: 323 TADVRVGDAGAPDA----------------WYDGRAFDRILADVPCSASGIVRRHPDIRW 366
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR+ DI L +IL LW ++K GG+LL+VTCS++ EE E QA F +D++RL
Sbjct: 367 LRREADIAALVAEQRRILAALWPLVKQGGELLYVTCSIFPEEGELQARWFEAACEDAVRL 426
Query: 301 NSPGQLLP---------TVNKKQDYDGFFYSLFQKR 327
++PGQLLP +++ D+DGFFY+ FQKR
Sbjct: 427 DAPGQLLPGGVHGGAAGALDQNTDHDGFFYARFQKR 462
>gi|421476812|ref|ZP_15924675.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
multivorans CF2]
gi|400227654|gb|EJO57642.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
multivorans CF2]
Length = 487
Score = 306 bits (784), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 145/341 (42%), Positives = 214/341 (62%), Gaps = 33/341 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
M+NA+LR FLR++ + + M+ + WNY WWI+ VK +P+ W+ IL G ++
Sbjct: 166 MVNAVLRRFLRER-DALVAAMHADPVARWNYRAWWIDAVKRAWPD--AWQAILAAGDRQG 222
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N R+ ++ +Y L+ +G+E IG A++L + + + +IP F +G S+QDA
Sbjct: 223 PLTLRVNARRASVDAYLGTLRDNGIEAAAIGRHAVRLASALPVERIPGFADGVVSVQDAG 282
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAA L R GM VLDAC+APGGKT H+LE+AD ++++++++ SR I ENL RL+L
Sbjct: 283 AQLAAEWLGARDGMRVLDACAAPGGKTGHILELADAEVVALESDASRATRIGENLARLSL 342
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A + + D + +Y + FDRILAD+PC+ SG+VRR+PDI W
Sbjct: 343 AAEVRVGDAGAPDA----------------WYDGRPFDRILADVPCSASGIVRRHPDIRW 386
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR+ DI L +IL+ LW ++KPGG+LL+VTCS++ EE E+QA F +D++RL
Sbjct: 387 LRREADIPALVAEQRRILSALWPLVKPGGELLYVTCSIFPEEGEQQARWFEAACEDAVRL 446
Query: 301 NSPGQLLPTV--------------NKKQDYDGFFYSLFQKR 327
++PGQLLP + D+DGFFY+ FQKR
Sbjct: 447 DAPGQLLPRAASGGAGSEGTAGVPDPTTDHDGFFYARFQKR 487
>gi|161526289|ref|YP_001581301.1| sun protein [Burkholderia multivorans ATCC 17616]
gi|160343718|gb|ABX16804.1| sun protein [Burkholderia multivorans ATCC 17616]
Length = 488
Score = 305 bits (782), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 145/341 (42%), Positives = 214/341 (62%), Gaps = 33/341 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
M+NA+LR FLR++ + + M+ + WNY WWI+ VK +P+ W+ IL G ++
Sbjct: 167 MVNAVLRRFLRER-DTLVAAMHADPVAQWNYRAWWIDAVKRAWPD--AWQAILAAGDRQG 223
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N R+T++ +Y L+ +G+E IG A++L + + + +IP F +G S+QDA
Sbjct: 224 PLTLRVNARRTSVDAYLGTLRDNGIEAAAIGRHAVRLASALPVERIPGFADGVVSVQDAG 283
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAA L R GM LDAC+APGGKT H+LE+AD ++++++++ SR I ENL RL+L
Sbjct: 284 AQLAAEWLGARDGMRALDACAAPGGKTGHILELADAEVVALESDASRATRIGENLARLSL 343
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A + + D + +Y + FDRILAD+PC+ SG+VRR+PDI W
Sbjct: 344 AADVRVGDAGAPDA----------------WYDGRPFDRILADVPCSASGIVRRHPDIRW 387
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR+ DI L +IL+ LW ++KPGG+LL+VTCS++ EE E+QA F +D++RL
Sbjct: 388 LRREADIPALVAEQRRILSALWPLVKPGGELLYVTCSIFPEEGEQQARWFEAACEDAVRL 447
Query: 301 NSPGQLLPTV--------------NKKQDYDGFFYSLFQKR 327
++PGQLLP + D+DGFFY+ FQKR
Sbjct: 448 DAPGQLLPRAASGGAGSEGAAGVPDPTTDHDGFFYARFQKR 488
>gi|430804747|ref|ZP_19431862.1| tRNA and rRNA cytosine-C5-methylase [Cupriavidus sp. HMR-1]
gi|429503067|gb|ELA01369.1| tRNA and rRNA cytosine-C5-methylase [Cupriavidus sp. HMR-1]
Length = 457
Score = 305 bits (782), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 143/341 (41%), Positives = 214/341 (62%), Gaps = 33/341 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR FLR++ + + + E+ WN P WW+ Q++ YP+ +W + + + +P
Sbjct: 135 LVNAVLRRFLRERKALMDA-IAKDEEARWNLPTWWLEQLRAAYPD--RWTALAESVNARP 191
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
P+TLR+N ++ ++ Y K L +G+ T IGP A++L +S++P F G S+QDA
Sbjct: 192 PMTLRVNSKRLSVDEYLKELANAGMAGTAIGPQAVRLVRAFPVSQVPGFATGDVSVQDAG 251
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAAPL ++ GM VLDAC+APGGKT HLLE+ADI + +V+++ R I ENL RL+
Sbjct: 252 AQLAAPLCEVADGMRVLDACAAPGGKTGHLLELADIHVTAVESDAERAARIHENLARLDQ 311
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
+A +I+ D S+ ++ + FDRILAD+PC+ SG+VRR+PDI W
Sbjct: 312 RAEVIVGDASRPQ----------------DWWDGQQFDRILADVPCSASGIVRRHPDIRW 355
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR++DI KL +I++ LW +LKPGG L++VTCS++ E EEQA+ F D+IRL
Sbjct: 356 LRRESDIAKLVNEQRRIVSQLWSLLKPGGILVYVTCSIFPTEGEEQALWFGAQLPDAIRL 415
Query: 301 NSPGQLLPTVNKKQ--------------DYDGFFYSLFQKR 327
+PGQLLP ++ D+DGF+Y+ FQKR
Sbjct: 416 QAPGQLLPGTKAQETAGTDMAGQPSLPSDHDGFYYARFQKR 456
>gi|421865395|ref|ZP_16297073.1| Ribosomal RNA small subunit methyltransferase B [Burkholderia
cenocepacia H111]
gi|358074613|emb|CCE47951.1| Ribosomal RNA small subunit methyltransferase B [Burkholderia
cenocepacia H111]
Length = 463
Score = 305 bits (782), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 144/337 (42%), Positives = 214/337 (63%), Gaps = 29/337 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
M+NA+LR FLR++ + + M + + WNY WW++ VK +P+ W+ IL G ++
Sbjct: 146 MVNAVLRRFLRER-DALVAAMQDDPVACWNYRAWWVDAVKRAWPD--AWQAILAAGERQG 202
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N R+ + +Y L+ SG+E IG A++L + + + +IP F +G S+QDA
Sbjct: 203 PLTLRVNARRANVDAYLDTLRASGIEAVAIGRHAVRLASALPVDRIPGFADGVVSVQDAG 262
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAA L R GM VLDAC+APGGKT H+LE+AD ++++++++ +R I ENL RL+L
Sbjct: 263 AQLAAEWLGARDGMRVLDACAAPGGKTGHILELADAEVVALESDATRAARIGENLVRLSL 322
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A + + D + +Y + FDRILAD+PC+ SG+VRR+PDI W
Sbjct: 323 AANVCVGDAGAPDA----------------WYDGRPFDRILADVPCSASGIVRRHPDIRW 366
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR+ DI L +IL+ LW ++KPGG+LL+VTCS++ EE E QA F +D++RL
Sbjct: 367 LRREADIPALVAEQRRILSALWPLVKPGGELLYVTCSIFPEEGEGQARWFEAACEDAVRL 426
Query: 301 NSPGQLLP----------TVNKKQDYDGFFYSLFQKR 327
++PGQLLP +++ D+DGFFY+ FQKR
Sbjct: 427 DAPGQLLPGGVQGRAAAGALDQNTDHDGFFYARFQKR 463
>gi|189348997|ref|YP_001944625.1| Sun protein [Burkholderia multivorans ATCC 17616]
gi|189333019|dbj|BAG42089.1| Sun protein [Burkholderia multivorans ATCC 17616]
Length = 467
Score = 305 bits (782), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 145/341 (42%), Positives = 214/341 (62%), Gaps = 33/341 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
M+NA+LR FLR++ + + M+ + WNY WWI+ VK +P+ W+ IL G ++
Sbjct: 146 MVNAVLRRFLRER-DTLVAAMHADPVAQWNYRAWWIDAVKRAWPD--AWQAILAAGDRQG 202
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N R+T++ +Y L+ +G+E IG A++L + + + +IP F +G S+QDA
Sbjct: 203 PLTLRVNARRTSVDAYLGTLRDNGIEAAAIGRHAVRLASALPVERIPGFADGVVSVQDAG 262
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAA L R GM LDAC+APGGKT H+LE+AD ++++++++ SR I ENL RL+L
Sbjct: 263 AQLAAEWLGARDGMRALDACAAPGGKTGHILELADAEVVALESDASRATRIGENLARLSL 322
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A + + D + +Y + FDRILAD+PC+ SG+VRR+PDI W
Sbjct: 323 AADVRVGDAGAPDA----------------WYDGRPFDRILADVPCSASGIVRRHPDIRW 366
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR+ DI L +IL+ LW ++KPGG+LL+VTCS++ EE E+QA F +D++RL
Sbjct: 367 LRREADIPALVAEQRRILSALWPLVKPGGELLYVTCSIFPEEGEQQARWFEAACEDAVRL 426
Query: 301 NSPGQLLPTV--------------NKKQDYDGFFYSLFQKR 327
++PGQLLP + D+DGFFY+ FQKR
Sbjct: 427 DAPGQLLPRAASGGAGSEGAAGVPDPTTDHDGFFYARFQKR 467
>gi|206558871|ref|YP_002229631.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
cenocepacia J2315]
gi|444360665|ref|ZP_21161852.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
cenocepacia BC7]
gi|444373420|ref|ZP_21172785.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
cenocepacia K56-2Valvano]
gi|198034908|emb|CAR50780.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
cenocepacia J2315]
gi|443591768|gb|ELT60634.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
cenocepacia K56-2Valvano]
gi|443599568|gb|ELT67833.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
cenocepacia BC7]
Length = 463
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 144/337 (42%), Positives = 214/337 (63%), Gaps = 29/337 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
M+NA+LR FLR++ + + M + + WNY WW++ VK +P+ W+ IL G ++
Sbjct: 146 MVNAVLRRFLRER-DALVAAMQDDPVACWNYRAWWVDAVKRAWPD--AWQAILAAGERQG 202
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N R+ + +Y L+ SG+E IG A++L + + + +IP F +G S+QDA
Sbjct: 203 PLTLRVNARRANVDAYLDTLRASGIEAVAIGRHAVRLASALPVDRIPGFADGVVSVQDAG 262
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAA L R GM VLDAC+APGGKT H+LE+AD ++++++++ +R I ENL RL+L
Sbjct: 263 AQLAAEWLGARDGMRVLDACAAPGGKTGHILELADAEVVALESDATRAARIGENLVRLSL 322
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A + + D + +Y + FDRILAD+PC+ SG+VRR+PDI W
Sbjct: 323 AANVCVGDAGAPDA----------------WYDGRPFDRILADVPCSASGIVRRHPDIRW 366
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR+ DI L +IL+ LW ++KPGG+LL+VTCS++ EE E QA F +D++RL
Sbjct: 367 LRREADIPALVAEQRRILSALWPLVKPGGELLYVTCSIFPEEGEGQARWFEAACEDAVRL 426
Query: 301 NSPGQLLP----------TVNKKQDYDGFFYSLFQKR 327
++PGQLLP +++ D+DGFFY+ FQKR
Sbjct: 427 DAPGQLLPGGVQGRAAAGALDQNTDHDGFFYARFQKR 463
>gi|330818681|ref|YP_004362386.1| Sun protein [Burkholderia gladioli BSR3]
gi|327371074|gb|AEA62430.1| Sun protein [Burkholderia gladioli BSR3]
Length = 476
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 144/341 (42%), Positives = 211/341 (61%), Gaps = 33/341 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR FLR++ E F ++ + WNY WWI+ V+ +P W++IL +
Sbjct: 155 LVNAVLRRFLRER-ETFAAQWQADRGARWNYRGWWIDAVERAWPE--HWQSILAAAERPG 211
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N R T + +Y L++ G+E +G A++L +P+ + +IP F +G S+QDA
Sbjct: 212 PLTLRVNARHTDVDAYLATLREHGIEADAVGRHAVRLASPLPVDRIPGFADGVVSVQDAG 271
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAA L R GM VLDAC+APGGKT HLLE+AD+++++++++ +R I ENL RL L
Sbjct: 272 AQLAAEWLGARDGMRVLDACAAPGGKTGHLLELADVEVVALESDATRAERIGENLARLKL 331
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A + + D ++ + FDRILAD+PC+ SG+VRR+PDI W
Sbjct: 332 AAEVRVGDAGAPEA----------------WHDGRAFDRILADVPCSASGIVRRHPDIRW 375
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR+ DI L +IL LW +LKPGG+LL+VTCS++ EE E+QA F +D++RL
Sbjct: 376 LRREADIAALVAEQRRILLALWPLLKPGGELLYVTCSIFPEEGEQQARWFEDAVQDAVRL 435
Query: 301 NSPGQLLP--------------TVNKKQDYDGFFYSLFQKR 327
++PGQLLP ++ D+DGFFY+ FQKR
Sbjct: 436 DAPGQLLPRAAASRLPGDAGHDEAARQADHDGFFYARFQKR 476
>gi|170734472|ref|YP_001766419.1| sun protein [Burkholderia cenocepacia MC0-3]
gi|169817714|gb|ACA92297.1| sun protein [Burkholderia cenocepacia MC0-3]
Length = 463
Score = 305 bits (780), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 144/337 (42%), Positives = 215/337 (63%), Gaps = 29/337 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
M+NA+LR FLR++ + + M + + WNY WW++ VK +P+ W+ IL G +
Sbjct: 146 MVNAVLRRFLRER-DALVAAMQDDPVARWNYRAWWVDAVKRAWPD--AWQAILAAGEHQG 202
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N R+ ++ +Y L+ SG++ T IG A++L + + + +IP F +G S+QDA
Sbjct: 203 PLTLRVNARRASVDAYLDTLRASGIDATAIGRHAVRLASALPVERIPGFADGVVSVQDAG 262
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAA L R GM VLDAC+APGGKT H+LE+AD ++++++++ +R I ENL RL+L
Sbjct: 263 AQLAAEWLGARDGMRVLDACAAPGGKTGHILELADAEVVALESDATRAARIGENLVRLSL 322
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A + + D + +Y + FDRILAD+PC+ SG+VRR+PDI W
Sbjct: 323 AANVCVGDAGAPDT----------------WYDGRPFDRILADVPCSASGIVRRHPDIRW 366
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR+ DI L +IL+ LW ++KPGG+LL+VTCS++ EE E QA F +D++RL
Sbjct: 367 LRREADIPALVAEQRRILSALWPLVKPGGELLYVTCSIFPEEGELQARWFEAACEDAVRL 426
Query: 301 NSPGQLLP----------TVNKKQDYDGFFYSLFQKR 327
++PGQLLP +++ D+DGFFY+ FQKR
Sbjct: 427 DAPGQLLPGSVQGRAAAGALDQNTDHDGFFYARFQKR 463
>gi|390569588|ref|ZP_10249873.1| 16S rRNA methyltransferase B [Burkholderia terrae BS001]
gi|389938448|gb|EIN00292.1| 16S rRNA methyltransferase B [Burkholderia terrae BS001]
Length = 473
Score = 305 bits (780), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 147/344 (42%), Positives = 216/344 (62%), Gaps = 34/344 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR FLR++ E + N ++WNYP+WWI+ V+ +P+ W+++L VG+ +
Sbjct: 147 LVNAVLRNFLRER-EALLADAQNDAVAHWNYPVWWIDAVRNAWPD--TWQDMLAVGNSQG 203
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N R++T+ +Y + L++ + G A++L TP+ + +IP F G S+QDA
Sbjct: 204 PLTLRVNARRSTVEAYLQTLREHQIAAIQAGDHAVRLDTPMPVDRIPGFSEGVVSVQDAG 263
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAA L +R GM VLDAC+APGGKT HLLE+AD+ LI+++++ +R I ENL+RL L
Sbjct: 264 AQLAAQWLGVRDGMRVLDACAAPGGKTGHLLELADVDLIALESDATRARRIGENLQRLGL 323
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A + + D ++ + FDRILAD+PC+ SG+VRR+PDI W
Sbjct: 324 HAHVRVGDAG--------------NPAQWHDAADLPFDRILADVPCSASGIVRRHPDIRW 369
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR +DI L + +IL LW ++K GG+LL+VTCS++ EE E QA F H D++RL
Sbjct: 370 LRRASDIPALVEEQRRILEALWPLVKTGGELLYVTCSIFPEEGELQAQWFGNQHADAVRL 429
Query: 301 NSPGQLLPTVNKKQ-----------------DYDGFFYSLFQKR 327
++PGQLLP V + D+DGFFY+ FQKR
Sbjct: 430 DAPGQLLPAVARAPADVSAGSRAGQSTGSSLDHDGFFYARFQKR 473
>gi|170694011|ref|ZP_02885167.1| sun protein [Burkholderia graminis C4D1M]
gi|170141083|gb|EDT09255.1| sun protein [Burkholderia graminis C4D1M]
Length = 479
Score = 304 bits (779), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 147/348 (42%), Positives = 221/348 (63%), Gaps = 38/348 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR FLR++ + + + WNYP WWI+ V+ +P W+++L G+ +
Sbjct: 149 LVNAVLRNFLRERDALLTEAQAD-EVARWNYPTWWIDAVRRAWPE--AWQDVLAAGNTQG 205
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N R +T+ +Y ++L+ + + +G A+ L TP+ + +IP F G S+QDA
Sbjct: 206 PLTLRVNARHSTVEAYLQVLEDHHISASKVGDYAVMLATPMPVDRIPGFNEGVVSVQDAG 265
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAA LL +R GM VLDAC+APGGKT HLLE+A+++L+++++++SR I ENL+RL L
Sbjct: 266 AQLAAQLLGVRDGMRVLDACAAPGGKTGHLLELANLQLVALESDVSRARRIGENLQRLKL 325
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
+A + + D + K + DI++ FDRILAD+PC+ SG+VRR+PDI W
Sbjct: 326 EAEVRIGDAGAPS--KWHDDIDQP------------FDRILADVPCSASGIVRRHPDIRW 371
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR +DI L +IL LW ++KPGG+LL+VTCS++ EE E QA F ++D++RL
Sbjct: 372 LRRASDIPALVDEQRRILGALWPLVKPGGELLYVTCSIFPEEGELQAQWFGNKYQDAVRL 431
Query: 301 NSPGQLLPTVNKK---------------------QDYDGFFYSLFQKR 327
++PGQLLP+V + D+DGFFY+ FQKR
Sbjct: 432 DAPGQLLPSVARAPADTSAGSHAGEFADISAGANSDHDGFFYARFQKR 479
>gi|254246867|ref|ZP_04940188.1| Fmu, rRNA SAM-dependent methyltransferase [Burkholderia cenocepacia
PC184]
gi|124871643|gb|EAY63359.1| Fmu, rRNA SAM-dependent methyltransferase [Burkholderia cenocepacia
PC184]
Length = 463
Score = 304 bits (779), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 144/337 (42%), Positives = 215/337 (63%), Gaps = 29/337 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
M+NA+LR FLR++ + + M + + WNY WW++ VK +P+ W+ IL G ++
Sbjct: 146 MVNAVLRRFLRER-DALVAAMQDDPVARWNYRAWWVDAVKRAWPD--AWQAILAAGERQG 202
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N R+ ++ +Y L+ SG++ T IG A++L + + + +IP F +G S+QDA
Sbjct: 203 PLTLRVNARRASVDAYLDTLRASGIDATAIGRHAVRLASALPVERIPGFADGVVSVQDAG 262
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAA L R GM VLDAC+APGGKT H+LE+AD ++++++++ +R I ENL RL+L
Sbjct: 263 AQLAAEWLGARDGMRVLDACAAPGGKTGHILELADAEVVALESDATRAARIGENLVRLSL 322
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A + + D + +Y + FDRILAD+PC+ SG+VRR+PDI W
Sbjct: 323 AANVCVGDAGTPDT----------------WYDGRPFDRILADVPCSASGIVRRHPDIRW 366
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR+ DI L +IL LW ++KPGG+LL+VTCS++ EE E QA F +D++RL
Sbjct: 367 LRREADIPALVAEQRRILWALWPLVKPGGELLYVTCSIFPEEGELQARWFEAACEDAVRL 426
Query: 301 NSPGQLLP----------TVNKKQDYDGFFYSLFQKR 327
++PGQLLP +++ D+DGFFY+ FQKR
Sbjct: 427 DAPGQLLPGSVQGRAAAGALDQNTDHDGFFYARFQKR 463
>gi|221201862|ref|ZP_03574899.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
multivorans CGD2M]
gi|221207632|ref|ZP_03580640.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
multivorans CGD2]
gi|221172478|gb|EEE04917.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
multivorans CGD2]
gi|221178282|gb|EEE10692.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
multivorans CGD2M]
Length = 467
Score = 304 bits (778), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 145/341 (42%), Positives = 213/341 (62%), Gaps = 33/341 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
M+NA+LR FLR++ + + M+ + WNY WWI+ VK +P+ W+ IL G ++
Sbjct: 146 MVNAVLRRFLRER-DTLVAAMHADPVAQWNYRAWWIDAVKRAWPD--AWQAILAAGDRQG 202
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N R+ ++ +Y L+ +G+E IG A++L + + + +IP F +G S+QDA
Sbjct: 203 PLTLRVNARRASVDAYLGTLRDNGIEAAAIGRHAVRLASALPVERIPGFADGVVSVQDAG 262
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAA L R GM VLDAC+APGGKT H+LE+AD ++++++++ SR I ENL RL+L
Sbjct: 263 AQLAAEWLGARDGMRVLDACAAPGGKTGHILELADAEVVALESDASRATRIGENLARLSL 322
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A + + D + +Y + FDRILAD+PC+ SG+VRR+PDI W
Sbjct: 323 AADVRVGDAGAPDT----------------WYDGRPFDRILADVPCSASGIVRRHPDIRW 366
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR+ DI L +IL+ LW +LK GG+LL+VTCS++ EE E+QA F +D++RL
Sbjct: 367 LRREADIPALVAEQRRILSALWPLLKQGGELLYVTCSIFPEEGEQQARWFEAACEDAVRL 426
Query: 301 NSPGQLLPTV--------------NKKQDYDGFFYSLFQKR 327
++PGQLLP + D+DGFFY+ FQKR
Sbjct: 427 DAPGQLLPRAASGGAGSEGTAGVPDPTTDHDGFFYARFQKR 467
>gi|221214672|ref|ZP_03587642.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
multivorans CGD1]
gi|221165562|gb|EED98038.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
multivorans CGD1]
Length = 490
Score = 303 bits (777), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 144/341 (42%), Positives = 214/341 (62%), Gaps = 33/341 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
M+NA+LR FLR++ + + M+ + WNY WWI+ V+ +P+ W+ IL G ++
Sbjct: 169 MVNAVLRRFLRER-DTLVAAMHADPVAQWNYRAWWIDAVRRAWPD--AWQAILAAGDRQG 225
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N R+ ++ +Y L+ +G+E IG A++L + + + +IP F +G S+QDA
Sbjct: 226 PLTLRVNARRASVDAYLGTLRDNGIEAAAIGRHAVRLASALPVERIPGFADGIVSVQDAG 285
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAA L R GM VLDAC+APGGKT H+LE+AD ++++++++ SR I ENL RL+L
Sbjct: 286 AQLAAEWLGARDGMRVLDACAAPGGKTGHILELADAEVVALESDASRATRIGENLARLSL 345
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A + + D + +Y + FDRILAD+PC+ SG+VRR+PDI W
Sbjct: 346 AAEVRVGDAGAPD----------------GWYDGRPFDRILADVPCSASGIVRRHPDIRW 389
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR+ DI L +IL+ LW ++KPGG+LL+VTCS++ EE E+QA F +D++RL
Sbjct: 390 LRREADIPALVAEQRRILSALWPLVKPGGELLYVTCSIFPEEGEQQARWFEAACEDAVRL 449
Query: 301 NSPGQLLPTV--------------NKKQDYDGFFYSLFQKR 327
++PGQLLP + D+DGFFY+ FQKR
Sbjct: 450 DAPGQLLPRAASGGAGSEGAAGVPDPTTDHDGFFYARFQKR 490
>gi|94312493|ref|YP_585703.1| tRNA and rRNA cytosine-C5-methylase [Cupriavidus metallidurans
CH34]
gi|93356345|gb|ABF10434.1| tRNA and rRNA cytosine-C5-methylase (sun protein) [Cupriavidus
metallidurans CH34]
Length = 457
Score = 303 bits (777), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 143/341 (41%), Positives = 214/341 (62%), Gaps = 33/341 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR FLR++ + + + E+ WN P WW+ Q++ YP+ +W + + + +P
Sbjct: 135 LVNAVLRRFLRERKALMDA-IAKDEEARWNLPTWWLEQLRAAYPD--RWMALAESVNVRP 191
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
P+TLR+N ++ ++ Y K L +G+ T IGP A++L +S++P F G S+QDA
Sbjct: 192 PMTLRVNTKRLSVDEYLKELANAGMAGTAIGPQAVRLVRAFPVSQVPGFATGDVSVQDAG 251
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAAPL ++ GM VLDAC+APGGKT HLLE+ADI + +V+++ R I ENL RL+
Sbjct: 252 AQLAAPLCEVADGMRVLDACAAPGGKTGHLLELADIHVTAVESDAERAARIHENLARLDQ 311
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
+A +I+ D S+ ++ + FDRILAD+PC+ SG+VRR+PDI W
Sbjct: 312 RAEVIVGDASRPK----------------DWWDGQQFDRILADVPCSASGIVRRHPDIRW 355
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR++DI KL +I++ LW +LKPGG L++VTCS++ E EEQA+ F D+IRL
Sbjct: 356 LRRESDIAKLVNEQRRIVSQLWSLLKPGGILVYVTCSIFPTEGEEQALWFGAQLPDAIRL 415
Query: 301 NSPGQLLPTVNKKQ--------------DYDGFFYSLFQKR 327
+PGQLLP ++ D+DGF+Y+ FQKR
Sbjct: 416 QAPGQLLPGTKAQETAGTNMAGQPSLPSDHDGFYYARFQKR 456
>gi|421467918|ref|ZP_15916498.1| ribosomal RNA small subunit methyltransferase B, partial
[Burkholderia multivorans ATCC BAA-247]
gi|400232958|gb|EJO62542.1| ribosomal RNA small subunit methyltransferase B, partial
[Burkholderia multivorans ATCC BAA-247]
Length = 445
Score = 303 bits (777), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 145/341 (42%), Positives = 213/341 (62%), Gaps = 33/341 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
M+NA+LR FLR++ + + M+ + WNY WWI+ VK +P+ W+ IL G ++
Sbjct: 124 MVNAVLRRFLRER-DTLVAAMHADPVAQWNYRAWWIDAVKRAWPD--AWQAILAAGDRQG 180
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N R+ ++ +Y L+ +G+E IG A++L + + + +IP F +G S+QDA
Sbjct: 181 PLTLRVNARRASVDAYLGTLRDNGIEAAAIGRHAVRLASALPVERIPGFADGVVSVQDAG 240
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAA L R GM VLDAC+APGGKT H+LE+AD ++++++++ SR I ENL RL+L
Sbjct: 241 AQLAAEWLGARDGMRVLDACAAPGGKTGHILELADAEVVALESDASRATRIGENLARLSL 300
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A + + D + +Y + FDRILAD+PC+ SG+VRR+PDI W
Sbjct: 301 AADVRVGDAGAPDT----------------WYDGRPFDRILADVPCSASGIVRRHPDIRW 344
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR+ DI L +IL+ LW +LK GG+LL+VTCS++ EE E+QA F +D++RL
Sbjct: 345 LRREADIPALVAEQRRILSALWPLLKEGGELLYVTCSIFPEEGEQQARWFEAACEDAVRL 404
Query: 301 NSPGQLLPTV--------------NKKQDYDGFFYSLFQKR 327
++PGQLLP + D+DGFFY+ FQKR
Sbjct: 405 DAPGQLLPRAASGGAGSEGTAGVPDPTTDHDGFFYARFQKR 445
>gi|78067943|ref|YP_370712.1| rRNA SAM-dependent methyltransferase [Burkholderia sp. 383]
gi|77968688|gb|ABB10068.1| Fmu, rRNA SAM-dependent methyltransferase [Burkholderia sp. 383]
Length = 463
Score = 303 bits (776), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 143/337 (42%), Positives = 216/337 (64%), Gaps = 29/337 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
M+NA+LR FLR++ + + ++ + WNY WW++ VK +P+ W+ IL G ++
Sbjct: 146 MVNAVLRRFLRERDALVAALQDDV-VARWNYRAWWVDSVKRAWPD--AWQAILAAGERQG 202
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N R+ ++ +Y L+ +G+E T IG A++L + + + +IP F +G S+QDA
Sbjct: 203 PLTLRVNARRASVDAYLDTLRANGIEATAIGRHAVRLASALPVDRIPGFADGVVSVQDAG 262
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAA L R GM VLDAC+APGGKT H+LE+AD ++++++++ +R I ENL RL+L
Sbjct: 263 AQLAAEWLGARDGMRVLDACAAPGGKTGHILELADAEVVALESDATRAARIGENLVRLSL 322
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
+A + + D +Y + FDRILAD+PC+ SG+VRR+PDI W
Sbjct: 323 EADVRVGDAGAPGA----------------WYDGRPFDRILADVPCSASGIVRRHPDIRW 366
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR+ DI L +IL+ LW ++KPGG+LL+VTCS++ EE E QA F +D++RL
Sbjct: 367 LRREADIPALVAEQRRILSALWPLVKPGGELLYVTCSVFPEEGELQARWFEAACEDAVRL 426
Query: 301 NSPGQLLP----------TVNKKQDYDGFFYSLFQKR 327
++PGQLLP +++ D+DGFFY+ FQKR
Sbjct: 427 DAPGQLLPGGVQGGAAAGALDQNTDHDGFFYAQFQKR 463
>gi|329910997|ref|ZP_08275426.1| Ribosomal RNA small subunit methyltransferase B [Oxalobacteraceae
bacterium IMCC9480]
gi|327546013|gb|EGF31091.1| Ribosomal RNA small subunit methyltransferase B [Oxalobacteraceae
bacterium IMCC9480]
Length = 437
Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 160/326 (49%), Positives = 215/326 (65%), Gaps = 21/326 (6%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
M+NA+LR FLR++ + +++ + WNYP WWI+ ++ YP QW+ IL G+ P
Sbjct: 130 MVNAVLRRFLRERATLL-AEVLRQPVAEWNYPGWWIDTMRNAYPQ--QWQAILHAGNAAP 186
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PL LR+NQR+TT +Y LL + +GP AI+L P+ + +IP F G S+QDAA
Sbjct: 187 PLILRVNQRRTTPDAYLALLADQQILARQVGPDAIRLERPVPVLQIPGFMEGLVSVQDAA 246
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAAPLLD R GM VLDAC+APGGKT HLLE A + LI++D++ RL I ENL+RL L
Sbjct: 247 AQLAAPLLDARDGMRVLDACAAPGGKTGHLLERAQLDLIALDSDPRRLKRIEENLQRLQL 306
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A L+ D + + ++ K FDRILAD+PCT SG++RR+PDI W
Sbjct: 307 TARLVAGDAAATD-----------------WWDGKPFDRILADVPCTASGILRRHPDIRW 349
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRRK D +L+ S +IL+NLW+ML P GKLLFVTCSLW +ESE QA F+ ++ + RL
Sbjct: 350 LRRKADTAQLAALSSRILDNLWRMLAPDGKLLFVTCSLWPQESEAQAAAFAMRNQ-AERL 408
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQK 326
+PGQLLP +D+DG FY+LF+K
Sbjct: 409 PAPGQLLPMATSNEDHDGLFYALFRK 434
>gi|416996031|ref|ZP_11939131.1| 16S rRNA methyltransferase B, partial [Burkholderia sp. TJI49]
gi|325518100|gb|EGC97891.1| 16S rRNA methyltransferase B [Burkholderia sp. TJI49]
Length = 362
Score = 302 bits (774), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 144/341 (42%), Positives = 216/341 (63%), Gaps = 33/341 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
M+NA+LR FLR++ + + + + WNY WWI+ VK +P+ W+ IL G ++
Sbjct: 41 MVNAVLRRFLRER-DALVAALQADPVARWNYRAWWIDAVKRAWPD--AWQAILAAGDRQG 97
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N R++T+ +Y L+ +G+E IG A++L + + + +IP F +G S+QDA
Sbjct: 98 PLTLRVNARRSTVDAYLDTLRANGIEAAAIGRHAVRLASALPVERIPGFADGVVSVQDAG 157
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAA L R GM VLDAC+APGGKT HLLE+AD+++++++++ +R I ENL RL+L
Sbjct: 158 AQLAAEWLGARDGMRVLDACAAPGGKTGHLLELADVEVVALESDATRATRIGENLARLSL 217
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A + + D + ++ + FDRILAD+PC+ SG+VRR+PDI W
Sbjct: 218 AADVRVGDAGSPDA----------------WHDGRPFDRILADVPCSASGIVRRHPDIRW 261
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR+ DI L +IL+ LW ++KPGG+LL+VTCS++ EE E QA F +D++RL
Sbjct: 262 LRREADIAALVAEQRRILSALWPLVKPGGELLYVTCSIFPEEGELQARWFEAACEDAVRL 321
Query: 301 NSPGQLLP--------------TVNKKQDYDGFFYSLFQKR 327
++PGQLLP +++ D+DGFFY+ FQKR
Sbjct: 322 DAPGQLLPRAVPDGVRGGAAVGALDQNTDHDGFFYARFQKR 362
>gi|340785767|ref|YP_004751232.1| ribosomal RNA small subunit methyltransferase B [Collimonas
fungivorans Ter331]
gi|340551034|gb|AEK60409.1| Ribosomal RNA small subunit methyltransferase B [Collimonas
fungivorans Ter331]
Length = 436
Score = 300 bits (769), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 163/326 (50%), Positives = 222/326 (68%), Gaps = 17/326 (5%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
M+NA+LR FLR++ E + WNYP+WWI+++K YP QW+ IL G+ P
Sbjct: 127 MVNAVLRRFLRER-ETLVAAAIKTPFGLWNYPVWWIDRMKAAYPQ--QWQAILTAGNAAP 183
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N+RKT++ +Y L + IGP AI+L T + +++IP F +G S+QDAA
Sbjct: 184 PLTLRVNRRKTSVAAYLDTLASHAITARQIGPDAIRLDTAMPVAQIPGFEDGLASVQDAA 243
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAAPLLD++ GM VLDAC+APGGKT H+LE AD++L ++DNN RL I++NL+RL L
Sbjct: 244 AQLAAPLLDLQDGMRVLDACAAPGGKTGHILESADVELTALDNNPKRLLRITQNLQRLQL 303
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
+A L L D + ++ + FDRILAD+PCT SG+VRR+PDI W
Sbjct: 304 EAKLQLGDAG-------------TGSQGGDWWDGQLFDRILADVPCTASGIVRRHPDIRW 350
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRRK D ++L+ S KIL+NLW+ML+P GKLL VTCS+W +ESE QA F+ + + RL
Sbjct: 351 LRRKTDTEQLATLSAKILDNLWQMLRPDGKLLLVTCSVWPQESEAQAAAFAARNN-ARRL 409
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQK 326
+PGQLLPT + + D+DG FY+LFQK
Sbjct: 410 PAPGQLLPTADAQHDHDGLFYALFQK 435
>gi|237746959|ref|ZP_04577439.1| tRNA and rRNA cytosine-C5-methylase [Oxalobacter formigenes HOxBLS]
gi|229378310|gb|EEO28401.1| tRNA and rRNA cytosine-C5-methylase [Oxalobacter formigenes HOxBLS]
Length = 441
Score = 300 bits (767), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 164/326 (50%), Positives = 214/326 (65%), Gaps = 21/326 (6%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR FLR++ K+ + E+ WNYP WWI Q + YP WK IL G+ P
Sbjct: 136 LVNAVLRRFLREQPNFLKAARQD-SEASWNYPGWWIEQAQQAYP--VHWKTILSAGNGVP 192
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N RKTT+ Y +L + +G+ IGP A+KL PI +++IP F G S+QDAA
Sbjct: 193 PLTLRVNVRKTTVNDYLELAEAAGIGCMAIGPYAVKLIQPIPVNRIPGFMEGLVSVQDAA 252
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAAPLL + GM VLDAC+APGGK H+LE+A I L+++D + RL MI ENL+RL L
Sbjct: 253 AQLAAPLLGLEDGMKVLDACAAPGGKAGHMLEMAHIDLLALDRDRRRLRMIQENLERLGL 312
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
+A DI R ++ FD ILAD+PCT SG++RR+PDI W
Sbjct: 313 RA-----------------DIKTGDATRSDWWDKSLFDCILADVPCTASGIIRRHPDIRW 355
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR++D +LS S +IL NLW MLKPGGKLL TCS+W EESE QA F+ + ++RL
Sbjct: 356 LRRQSDSHELSLVSARILKNLWPMLKPGGKLLLATCSIWPEESERQAEAFAA-YSGALRL 414
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQK 326
+PGQLLPTVN D+DG FY+LF+K
Sbjct: 415 PAPGQLLPTVNGMNDHDGLFYALFKK 440
>gi|113869632|ref|YP_728121.1| tRNA and rRNA cytosine-C5-methylase [Ralstonia eutropha H16]
gi|113528408|emb|CAJ94753.1| tRNA and rRNA cytosine-C5-methylase [Ralstonia eutropha H16]
Length = 466
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 140/345 (40%), Positives = 212/345 (61%), Gaps = 37/345 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR FLR++ + +++ ++ WN P WW+ ++ YP+ QW + + +P
Sbjct: 140 LVNAVLRRFLRERKALL-AEVNRDEQARWNLPPWWLRMLREAYPD--QWMALAASANVRP 196
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
P+T+R+N + ++ Y L +GL ++GP A++L + ++++P F G S+QDA
Sbjct: 197 PMTVRVNTARVSVQQYQTDLANAGLAGHVVGPQAVRLVRAVPVTQLPGFAEGVVSVQDAG 256
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAAPLL++ GM VLDAC+APGGKT HLLE+ADI++ +V+++ R I+ENL RL
Sbjct: 257 AQLAAPLLEVADGMRVLDACAAPGGKTGHLLELADIEVTAVESDPQRTTRIAENLARLGK 316
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
+A +++ D S+ ++ + FDRILAD+PC+ SG+VRR+PDI W
Sbjct: 317 QARIVVGDASRPA----------------DWWDGQPFDRILADVPCSASGIVRRHPDIRW 360
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR+ DI KL +I++ LW +LKPGG L++VTCS++ E EEQA F D+IRL
Sbjct: 361 LRRETDIAKLVTEQRRIVSQLWPLLKPGGILVYVTCSIFPTEGEEQARWFGAQLADAIRL 420
Query: 301 NSPGQLLPTVNKKQ------------------DYDGFFYSLFQKR 327
+PGQLLP + Q D+DGFFY+ FQKR
Sbjct: 421 QAPGQLLPGTHATQAAGANGEKDATAGTSLPSDHDGFFYARFQKR 465
>gi|387903637|ref|YP_006333976.1| ribosomal RNA small subunit methyltransferase B [Burkholderia sp.
KJ006]
gi|387578529|gb|AFJ87245.1| Ribosomal RNA small subunit methyltransferase B [Burkholderia sp.
KJ006]
Length = 462
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 140/336 (41%), Positives = 213/336 (63%), Gaps = 28/336 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR F R++ + + + + + WNY WWI+ VK +P+ W+ +L G ++
Sbjct: 146 LVNAVLRRFERER-DTLVAALQDDPVARWNYRPWWIDAVKRAWPD--AWQAVLAAGDRQG 202
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N R+ ++ +Y L+ SG++ T IG A++L + + + +IP F +G S+QDA
Sbjct: 203 PLTLRVNARRASVDAYLDTLRASGIDATAIGRHAVRLASALPVDRIPGFGDGVVSVQDAG 262
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAA L R GM VLDAC+APGGKT H+LE+AD+ +++++++ +R I ENL RL+L
Sbjct: 263 AQLAAEWLGARDGMRVLDACAAPGGKTGHILELADVDVVALESDAARAERIGENLARLSL 322
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A + + D +Y + FDRILAD+PC+ SG+VRR+PDI W
Sbjct: 323 SADVRVGDAGAPQA----------------WYDGRPFDRILADVPCSASGIVRRHPDIRW 366
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR+ DI L +IL+ LW ++KPGG+LL+VTCS++ +E E QA F +D++RL
Sbjct: 367 LRREADIAALVAEQRRILSALWPLVKPGGELLYVTCSIFPDEGELQARWFEAACEDAVRL 426
Query: 301 NSPGQLLP---------TVNKKQDYDGFFYSLFQKR 327
++PGQLLP ++ D+DGFFY+ FQKR
Sbjct: 427 DAPGQLLPGGVRGATAGALDPTTDHDGFFYARFQKR 462
>gi|344168503|emb|CCA80793.1| 16S rRNA m5C967 methyltransferase,S-adenosyl-L-methionine-dependent
[blood disease bacterium R229]
Length = 430
Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 141/340 (41%), Positives = 211/340 (62%), Gaps = 32/340 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
MIN +LR FLR++G++ + + + NYP WWI V+ YP W+ IL G+++P
Sbjct: 109 MINGVLRRFLREQGDLVAAMQADPVAAI-NYPAWWIGAVRDAYPE--AWQAILAAGNRRP 165
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
P+ LR+N R+ + +Y L ++G+E IG A++L + + +P F G S+QDA
Sbjct: 166 PMVLRVNPRRVPVDAYLARLAEAGIEAERIGGQAVRLARAMPVGDLPGFVEGDVSVQDAG 225
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLN 179
AQLAAPLLD+ G VLDAC+APGGKT HLLE+AD +++++++++ +R I ENL RL
Sbjct: 226 AQLAAPLLDVAPGQRVLDACAAPGGKTGHLLELADGLEVVALESDAARAERIGENLARLG 285
Query: 180 LKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIP 239
AT+ + D +K + ++ + FDRILAD+PC+ +G+VRR+PDI
Sbjct: 286 QTATVCVGDAAKPDA----------------WWDGRPFDRILADVPCSAAGIVRRHPDIR 329
Query: 240 WLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIR 299
WLRR D+ L+ I++ LW LKPGGKL++VTCS++ E E QA F +D+IR
Sbjct: 330 WLRRPADLPALAALQRDIVSALWACLKPGGKLVYVTCSIFPTEGEAQARWFESRLQDAIR 389
Query: 300 LNSPGQLLPTVNKKQ------------DYDGFFYSLFQKR 327
L+ PGQLLP +++ D+DGF+Y++FQKR
Sbjct: 390 LDGPGQLLPAMSEATGGFAPGVSSLPLDHDGFYYAVFQKR 429
>gi|172062101|ref|YP_001809753.1| sun protein [Burkholderia ambifaria MC40-6]
gi|171994618|gb|ACB65537.1| sun protein [Burkholderia ambifaria MC40-6]
Length = 462
Score = 297 bits (761), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 140/336 (41%), Positives = 213/336 (63%), Gaps = 28/336 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR F R++ + + + + + WNY WWI+ VK +P+ W+ IL G ++
Sbjct: 146 LVNAVLRRFQRER-DALVAALQDDPVARWNYRPWWIDAVKRAWPD--TWQAILAAGERQG 202
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N R+ ++ +Y L+ +G++ T IG A++L + + + +IP F +G S+QDA
Sbjct: 203 PLTLRVNARRASVDAYLDTLRANGIDATAIGRHAVRLASALPVDRIPGFADGVVSVQDAG 262
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAA L R GM VLDAC+APGGKT H+LE+A ++++++++ +R I ENL RL+L
Sbjct: 263 AQLAAEWLGARDGMRVLDACAAPGGKTGHILELAGAEVVALESDATRAARIGENLARLSL 322
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A + + D + +Y + FDRILAD+PC+ SG+VRR+PDI W
Sbjct: 323 AADVCVGDAGAPDA----------------WYDGRPFDRILADVPCSASGIVRRHPDIRW 366
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR+ DI L +IL LW ++KPGG+LL+VTCS++ EE E QA F +D++RL
Sbjct: 367 LRREADIAALVAEQRRILTALWPLVKPGGELLYVTCSIFPEEGELQARWFEAACEDAVRL 426
Query: 301 NSPGQLLP---------TVNKKQDYDGFFYSLFQKR 327
++PGQLLP +++ D+DGFFY+ FQKR
Sbjct: 427 DAPGQLLPGGVPAVAAGALDQNTDHDGFFYARFQKR 462
>gi|73543087|ref|YP_297607.1| rRNA SAM-dependent methyltransferase [Ralstonia eutropha JMP134]
gi|72120500|gb|AAZ62763.1| Fmu, rRNA SAM-dependent methyltransferase [Ralstonia eutropha
JMP134]
Length = 457
Score = 297 bits (760), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 142/341 (41%), Positives = 210/341 (61%), Gaps = 33/341 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR FLR++ + +++ ++ WN P WW+ ++ YP+ QW + + + +P
Sbjct: 135 LVNAVLRRFLRERKALL-AEVSRDDQARWNLPEWWLRMLREAYPD--QWTALAESANVRP 191
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
P+TLR+N + L Y L +GL IG A++L + +S++P F G S+QDA
Sbjct: 192 PMTLRVNTARIPLQQYLTDLANAGLAGQAIGTQAVRLVRAVPVSQVPGFDRGDVSVQDAG 251
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAAPLL++ GM VLDAC+APGGKT HLLE+ADI + +V+++ R + I ENL RL
Sbjct: 252 AQLAAPLLEVADGMRVLDACAAPGGKTGHLLELADIDVTAVESDAQRASRIDENLSRLGK 311
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
+A++++ D S+ ++ + FDRILAD+PC+ SG+VRR+PDI W
Sbjct: 312 RASIVVGDASRPG----------------DWWDGQQFDRILADVPCSASGIVRRHPDIRW 355
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR+ DI +L +I++ LW +LKPGG L++VTCS++ E EEQA F D+IRL
Sbjct: 356 LRREADIARLVNEQRRIVSQLWPLLKPGGILVYVTCSIFPTEGEEQARWFGAQLADAIRL 415
Query: 301 NSPGQLLPTVNKKQ--------------DYDGFFYSLFQKR 327
+PGQLLP + Q D+DGFFY+ FQKR
Sbjct: 416 QAPGQLLPGTHATQPAGDNHAGQVSLPSDHDGFFYARFQKR 456
>gi|300692914|ref|YP_003753909.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Ralstonia
solanacearum PSI07]
gi|299079974|emb|CBJ52651.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Ralstonia
solanacearum PSI07]
Length = 441
Score = 297 bits (760), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 141/340 (41%), Positives = 210/340 (61%), Gaps = 32/340 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
MIN +LR FLR++G++ + + + NYP WWI V+ YP W+ IL G+++P
Sbjct: 120 MINGVLRRFLREQGDLVAAMQADPVAAI-NYPAWWIGAVRDAYPE--AWQAILAAGNRRP 176
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
P+ LR+N R+ + +Y L ++G+E IG A++L + + +P F G S+QDA
Sbjct: 177 PMVLRVNPRRVPVDAYLARLAEAGIEAERIGGQAVRLARAMPVGDLPGFVEGDVSVQDAG 236
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLN 179
AQLAAPLLD+ G VLDAC+APGGKT HLLE+AD +++++++++ R I ENL RL
Sbjct: 237 AQLAAPLLDVAPGQRVLDACAAPGGKTGHLLELADGLEVVALESDAERAERIGENLARLG 296
Query: 180 LKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIP 239
AT+ + D +K + ++ + FDRILAD+PC+ +G+VRR+PDI
Sbjct: 297 QTATVCVGDAAKPDA----------------WWDGRSFDRILADVPCSAAGIVRRHPDIR 340
Query: 240 WLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIR 299
WLRR D+ L+ I++ LW LKPGGKL++VTCS++ E E QA F +D+IR
Sbjct: 341 WLRRPADLPALAALQRDIVSALWACLKPGGKLVYVTCSIFPTEGEAQARWFESRLQDAIR 400
Query: 300 LNSPGQLLPTVNKKQ------------DYDGFFYSLFQKR 327
L+ PGQLLP +++ D+DGF+Y++FQKR
Sbjct: 401 LDGPGQLLPAMSEATGGFAPGVSSLPLDHDGFYYAVFQKR 440
>gi|339327727|ref|YP_004687420.1| ribosomal RNA small subunit methyltransferase B [Cupriavidus
necator N-1]
gi|338167884|gb|AEI78939.1| ribosomal RNA small subunit methyltransferase B [Cupriavidus
necator N-1]
Length = 473
Score = 296 bits (759), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 140/345 (40%), Positives = 209/345 (60%), Gaps = 37/345 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR FLR++ + + + ++ WN P WW+ ++ YP+ QW + + +P
Sbjct: 147 LVNAVLRRFLRERKALL-ADVNRDEQARWNLPPWWLRMLREAYPD--QWMALAASANVRP 203
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
P+T+R+N + ++ Y L +GL ++GP A++L + ++++P F G S+QDA
Sbjct: 204 PMTVRVNTARVSVQQYQTDLANAGLAGHVVGPQAVRLVRAVPVTQLPGFTEGVVSVQDAG 263
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAAPLL++ GM VLDAC+APGGKT HLLE+ADI + +V+++ R I ENL RL
Sbjct: 264 AQLAAPLLEVADGMRVLDACAAPGGKTGHLLELADIDVTAVESDPQRTTRIGENLARLGK 323
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
+A +++ D S+ ++ + FDRILAD+PC+ SG+VRR+PDI W
Sbjct: 324 QARIVVGDASRPA----------------DWWDGQLFDRILADVPCSASGIVRRHPDIRW 367
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR+ DI KL +I++ LW +LKPGG L++VTCS++ E EEQA F D+IRL
Sbjct: 368 LRRETDIAKLITEQRRIVSQLWPLLKPGGILVYVTCSIFPTEGEEQARWFGAQLADAIRL 427
Query: 301 NSPGQLLPTVNKKQ------------------DYDGFFYSLFQKR 327
+PGQLLP + Q D+DGFFY+ FQKR
Sbjct: 428 QAPGQLLPGTHTTQAAGANGEKDATAGTSLPSDHDGFFYARFQKR 472
>gi|134297372|ref|YP_001121107.1| sun protein [Burkholderia vietnamiensis G4]
gi|134140529|gb|ABO56272.1| sun protein [Burkholderia vietnamiensis G4]
Length = 494
Score = 296 bits (759), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 139/336 (41%), Positives = 213/336 (63%), Gaps = 28/336 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR F R++ + + + + + WNY WWI+ VK +P+ W+ +L G ++
Sbjct: 178 LVNAVLRRFERER-DTLVAALQDDPVARWNYRPWWIDAVKRAWPD--AWQAVLAAGDRQG 234
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N R+ ++ +Y L+ +G++ T IG A++L + + + +IP F +G S+QDA
Sbjct: 235 PLTLRVNARRASVDAYLDTLRANGIDATAIGRHAVRLASALPVDRIPGFGDGVVSVQDAG 294
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAA L R GM VLDAC+APGGKT H+LE+AD+ +++++++ +R I ENL RL+L
Sbjct: 295 AQLAAEWLGARDGMRVLDACAAPGGKTGHILELADVDVVALESDAARAERIGENLARLSL 354
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A + + D +Y + FDRILAD+PC+ SG+VRR+PDI W
Sbjct: 355 SADVRVGDAGAPQA----------------WYDGRPFDRILADVPCSASGIVRRHPDIRW 398
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR+ DI L +IL+ LW ++KPGG+LL+VTCS++ +E E QA F +D++RL
Sbjct: 399 LRREADIAALVAEQRRILSALWPLVKPGGELLYVTCSIFPDEGELQARWFEAACEDAVRL 458
Query: 301 NSPGQLLP---------TVNKKQDYDGFFYSLFQKR 327
++PGQLLP ++ D+DGFFY+ FQKR
Sbjct: 459 DAPGQLLPGGVRGATAGALDPTTDHDGFFYARFQKR 494
>gi|171319444|ref|ZP_02908549.1| sun protein [Burkholderia ambifaria MEX-5]
gi|171095336|gb|EDT40317.1| sun protein [Burkholderia ambifaria MEX-5]
Length = 462
Score = 296 bits (758), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 140/336 (41%), Positives = 212/336 (63%), Gaps = 28/336 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR F R++ ++ + + + + WNY WWI+ VK +P+ W+ IL G ++
Sbjct: 146 LVNAVLRRFQRER-DVLVAALQDDPVARWNYRPWWIDAVKRAWPD--AWQAILAAGERQG 202
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N R+ ++ +Y L+ +G++ T IG A++L + + + +IP F +G S+QDA
Sbjct: 203 PLTLRVNARRASVDAYLDTLRANGIDATAIGRHAVRLASALPVDRIPGFADGVVSVQDAG 262
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAA L R GM VLDAC+APGGKT H+LE+A +++++++ +R I ENL RL+L
Sbjct: 263 AQLAAEWLGARDGMRVLDACAAPGGKTGHILELAGADVVALESDATRAARIGENLARLSL 322
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A + + D +Y + FDRILAD+PC+ SG+VRR+PDI W
Sbjct: 323 AADVRVGDAGAPGA----------------WYDGRPFDRILADVPCSASGIVRRHPDIRW 366
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR+ DI L +IL LW ++KPGG+LL+VTCS++ EE E QA F +D++RL
Sbjct: 367 LRREADIAALVAEQRRILTALWPLVKPGGELLYVTCSIFPEEGELQARWFEAACEDAVRL 426
Query: 301 NSPGQLLP---------TVNKKQDYDGFFYSLFQKR 327
++PGQLLP +++ D+DGFFY+ FQKR
Sbjct: 427 DAPGQLLPGGVHAGAAGALDQNTDHDGFFYARFQKR 462
>gi|167585080|ref|ZP_02377468.1| Fmu, rRNA SAM-dependent methyltransferase [Burkholderia ubonensis
Bu]
Length = 465
Score = 296 bits (758), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 142/339 (41%), Positives = 211/339 (62%), Gaps = 31/339 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
M+NA+LR FLR++ + + M + + WNY WW + V+ +P+ W+ +L G +
Sbjct: 146 MVNAVLRRFLRER-DAQVAAMQDDPVARWNYRAWWRDAVQAAWPD--GWQAMLAAGDRPG 202
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N R+TT+ +Y L+ G++ IG A++L +P+ + +IP F +G S+QDA
Sbjct: 203 PLTLRVNARRTTVDAYLDTLRSHGIDAAAIGKHAVRLASPLPVERIPGFADGVVSVQDAG 262
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAA L GM VLDAC+APGGKT H+LE+AD ++I+++++ +R I ENL RL+L
Sbjct: 263 AQLAAEWLGAADGMRVLDACAAPGGKTGHILELADAEVIALESDAARATRIGENLARLSL 322
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A + + D ++ + FDRILAD+PC+ SG+VRR+PDI W
Sbjct: 323 VADVRVGDAGAPG----------------EWHDGRPFDRILADVPCSASGIVRRHPDIRW 366
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR+ DI L +IL+ LW ++KPGG+LL+VTCS++ EE E QA F +D++RL
Sbjct: 367 LRREADIPALVAEQRRILSALWPLVKPGGELLYVTCSIFPEEGELQARWFEAACEDAVRL 426
Query: 301 NSPGQLLPTV------------NKKQDYDGFFYSLFQKR 327
++PGQLLP ++ D+DGFFY+ FQKR
Sbjct: 427 DAPGQLLPRAASGGAQAGAAGPDQNTDHDGFFYARFQKR 465
>gi|377819468|ref|YP_004975839.1| sun protein [Burkholderia sp. YI23]
gi|357934303|gb|AET87862.1| sun protein [Burkholderia sp. YI23]
Length = 472
Score = 295 bits (756), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 144/351 (41%), Positives = 208/351 (59%), Gaps = 43/351 (12%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR FLR++ N + WNYP WWI+ V+ + P+ W+ IL+ G+ +
Sbjct: 141 LVNAVLRNFLRERESSIDEARKN-EVARWNYPQWWIDAVRRSQPD--AWERILEAGNAQG 197
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N R ++ Y L+++ +E G A++L TP+ + +IP F G S+QDA
Sbjct: 198 PLTLRVNARHASVDDYLSRLREAHIEADAAGLHAVRLKTPMPVDRIPGFDEGVVSVQDAG 257
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAA LL + GM VLDAC+APGGKT H+LE+AD+ LI+++++ R I +NL RL L
Sbjct: 258 AQLAAQLLGAKDGMRVLDACAAPGGKTGHILELADVDLIALESDAERSGRIGQNLTRLKL 317
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A + + D + +++ FDRILAD+PC+ SG+VRR+PDI W
Sbjct: 318 DARIEVGD----------------AGDPAQWFDGTPFDRILADVPCSASGIVRRHPDIRW 361
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR +DI L +ILN LW ++ GG+LL+VTCS++ EE E QA F H+D++RL
Sbjct: 362 LRRASDIDALVAEQRRILNALWPLVAKGGELLYVTCSMFPEEGEAQARWFGTAHEDAVRL 421
Query: 301 NSPGQLLPTVNKKQ------------------------DYDGFFYSLFQKR 327
++PGQLLPT + D+DGFFY+ FQKR
Sbjct: 422 DAPGQLLPTAARASADAVQGSPDSTNLASPDRDAEIFADHDGFFYARFQKR 472
>gi|339905983|ref|YP_002913172.2| 16S rRNA methyltransferase B [Burkholderia glumae BGR1]
gi|339305137|gb|ACR30468.2| ribosomal RNA small subunit methyltransferase B [Burkholderia
glumae BGR1]
Length = 483
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 141/340 (41%), Positives = 206/340 (60%), Gaps = 32/340 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR FLR++ E ++ + WNY WWI ++ +P+ W+ IL G
Sbjct: 163 LVNAVLRRFLRER-ETLVAQAQADRVARWNYRPWWIEALERAWPD--DWQAILAAGDLAG 219
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N R+ ++ +Y L++ G++ G A++L P+ + +IP F +G S+QDA
Sbjct: 220 PLTLRVNARQASVAAYLATLREQGIDAAAAGRYAVRLAAPLPVERIPGFADGMVSVQDAG 279
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAA L GM VLDAC+APGGKT HLLE+AD+++++++++ SR I ENL RL L
Sbjct: 280 AQLAAEWLGATDGMRVLDACAAPGGKTGHLLELADLEVVALESDASRATRIGENLARLKL 339
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A + + D ++ + FDRILAD+PC+ SG+VRR+PDI W
Sbjct: 340 AAEVRVGDAGAPE----------------GWHDGRPFDRILADVPCSASGIVRRHPDIRW 383
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR+ DI L +IL LW +LKPGG+LL+VTCS++ EE E QA F +D++RL
Sbjct: 384 LRRETDIAALVAEQRRILQALWPLLKPGGELLYVTCSVFPEEGEAQARWFEGAVQDAVRL 443
Query: 301 NSPGQLLP-------------TVNKKQDYDGFFYSLFQKR 327
++PGQLLP ++ D+DGFFY+ FQKR
Sbjct: 444 DAPGQLLPRAAAGRLPYPGHDEAARQADHDGFFYARFQKR 483
>gi|374370222|ref|ZP_09628231.1| rRNA SAM-dependent methyltransferase [Cupriavidus basilensis OR16]
gi|373098224|gb|EHP39336.1| rRNA SAM-dependent methyltransferase [Cupriavidus basilensis OR16]
Length = 450
Score = 294 bits (753), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 138/340 (40%), Positives = 212/340 (62%), Gaps = 32/340 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR FLR++ E +++ E+ WN P WW++ ++ YP+ QW + + + +P
Sbjct: 129 LVNAVLRRFLRER-EALLAEVRQDDEARWNLPAWWLDALRKAYPD--QWTALAESANVRP 185
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
P+TLR+N + ++ Y K + +G+ IGP A++L +S+IP F G S+QDA
Sbjct: 186 PMTLRVNTARVSVPDYLKRVLNAGMAGVAIGPQAVRLVRAFPVSQIPGFAEGDVSVQDAG 245
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQ+AAPLLD+ G VLDAC+APGGKT H+LE+A +++ +++++ R I ENL RL
Sbjct: 246 AQMAAPLLDLADGQRVLDACAAPGGKTGHILELAKVEVTALESDAQRATRIDENLARLGQ 305
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
+AT+++ D S+ ++ N+ +DRILAD+PC+ SG+VRR+PDI W
Sbjct: 306 QATVVVGDASRPQ----------------DWWDNRQYDRILADVPCSASGIVRRHPDIRW 349
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR+ DI +L +I++ LW +LKPGG L++VTCS++ E+EEQA F D+IRL
Sbjct: 350 LRREVDIPRLVTEQRRIVSQLWNLLKPGGILVYVTCSIFPTENEEQARWFGAQLPDAIRL 409
Query: 301 NSPGQLLPTVNKK-------------QDYDGFFYSLFQKR 327
+PGQ+LP + D+DGFFY+ FQKR
Sbjct: 410 QAPGQMLPGSKDQLAGGGDGSQEGLPTDHDGFFYARFQKR 449
>gi|254251085|ref|ZP_04944403.1| tRNA and rRNA cytosine-C5-methylase [Burkholderia dolosa AUO158]
gi|124893694|gb|EAY67574.1| tRNA and rRNA cytosine-C5-methylase [Burkholderia dolosa AUO158]
Length = 366
Score = 294 bits (753), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 143/333 (42%), Positives = 207/333 (62%), Gaps = 33/333 (9%)
Query: 9 FLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPPLTLRINQ 68
FLR++ I + M + + WNY WWI+ VK +P+ W+ IL G ++ PLTLR+N
Sbjct: 53 FLRERDAIVAA-MQDDPVARWNYRAWWIDAVKHAWPD--AWQAILAAGERQGPLTLRVNA 109
Query: 69 RKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAAQLAAPLL 128
R+T++ +Y L SG+E IG A++L + + + +IP F +G S+QDA AQLAA L
Sbjct: 110 RRTSVDAYLDTLHASGIEAAAIGRHAVRLASALPVDRIPGFADGIVSVQDAGAQLAAEWL 169
Query: 129 DIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSD 188
D+R GM VLDAC+APGGKT H+LE+AD ++++++++ +R I ENL RL+L A + + D
Sbjct: 170 DVRDGMRVLDACAAPGGKTGHILELADAEVVALESDANRAARIGENLARLSLDAEVRVGD 229
Query: 189 ISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIK 248
+ +Y + FDRILAD+PC+ SG+VRR+PDI WLRR DI
Sbjct: 230 AGAPDT----------------WYDGRPFDRILADVPCSASGIVRRHPDIRWLRRATDIP 273
Query: 249 KLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLP 308
L +IL+ LW ++KPGG+LL+VTCS++ EE E QA F +D++RL++PGQLLP
Sbjct: 274 ALVAEQRRILSALWPLVKPGGELLYVTCSIFPEEGESQARWFEAACEDAVRLDAPGQLLP 333
Query: 309 TV--------------NKKQDYDGFFYSLFQKR 327
+ D+DGFFY+ FQKR
Sbjct: 334 SAAPGAAHRAATTGASGPNTDHDGFFYARFQKR 366
>gi|241664927|ref|YP_002983287.1| sun protein [Ralstonia pickettii 12D]
gi|240866954|gb|ACS64615.1| sun protein [Ralstonia pickettii 12D]
Length = 443
Score = 293 bits (750), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 143/342 (41%), Positives = 213/342 (62%), Gaps = 34/342 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
MIN +LR FLR++ + + M + NYP WWI+ V+ YP+ W+ IL G+++P
Sbjct: 120 MINGVLRRFLREQ-QALVADMQADPSAATNYPTWWIDAVRSAYPD--TWQTILAAGNRRP 176
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
P+ LR+N R+ + +Y L ++G++ IG A++L + +S++P F +G S+QDA
Sbjct: 177 PMVLRVNPRRIAVDAYLASLAEAGIDAERIGEQAVRLARAVPVSELPGFADGAVSVQDAG 236
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLN 179
AQLAA LLD+ G VLDAC+APGGKT HLLE+AD + + +++++ +R I ENL RLN
Sbjct: 237 AQLAATLLDVAPGQRVLDACAAPGGKTGHLLELADGLDVTALESDAARAVRIHENLARLN 296
Query: 180 LKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIP 239
AT+ + D +K + ++ + FDRILAD+PC+ +G+VRR+PDI
Sbjct: 297 QSATICVGDAAKPDT----------------WWDGRPFDRILADVPCSAAGIVRRHPDIR 340
Query: 240 WLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIR 299
WLRR D+K L+ I+ LW LKPGGKL++VTCS++ E E+QA F ++ +D+IR
Sbjct: 341 WLRRPADLKALAGLQRDIVRALWACLKPGGKLVYVTCSIFPTEGEDQAQWFERHLEDAIR 400
Query: 300 LNSPGQLLPTVNKKQ--------------DYDGFFYSLFQKR 327
L++PGQLLP D+DGFFY++FQKR
Sbjct: 401 LHAPGQLLPVSPDAAQTSGFAAGASPLPLDHDGFFYAVFQKR 442
>gi|187930737|ref|YP_001901224.1| sun protein [Ralstonia pickettii 12J]
gi|187727627|gb|ACD28792.1| sun protein [Ralstonia pickettii 12J]
Length = 443
Score = 293 bits (750), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 145/342 (42%), Positives = 212/342 (61%), Gaps = 34/342 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
MIN +LR FLR++ + + M + NYP+WWI+ V+ YP+ W+ IL G+++P
Sbjct: 120 MINGVLRRFLREQPALV-ADMQADPSAATNYPMWWIDAVRSAYPD--AWQTILAAGNRRP 176
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
P+ LR+N R+ + +Y L ++G++ IG A++L I +S +P F +G S+QDA
Sbjct: 177 PMVLRVNPRRIAVDAYLARLAEAGIDAERIGEQAVRLARAIPVSDVPGFADGDVSVQDAG 236
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLN 179
AQLAA LLD+ G VLDAC+APGGKT HLLE+AD + +++++ +R ISENL RLN
Sbjct: 237 AQLAATLLDVAPGQRVLDACAAPGGKTGHLLELADRLDATALESDAARAVRISENLTRLN 296
Query: 180 LKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIP 239
AT+ + D +K + ++ + FDRILAD+PC+ +G+VRR+PDI
Sbjct: 297 QTATICVGDAAKPDT----------------WWDGRPFDRILADVPCSAAGIVRRHPDIR 340
Query: 240 WLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIR 299
WLRR D+K L I+ LW LKPGGKL++VTCS++ E E+QA F ++ +D+IR
Sbjct: 341 WLRRPADLKALVALQRDIVRALWACLKPGGKLVYVTCSIFPTEGEDQARWFERHLEDAIR 400
Query: 300 LNSPGQLLPTVNKKQ--------------DYDGFFYSLFQKR 327
L++PGQLLP D+DGFFY++FQKR
Sbjct: 401 LHAPGQLLPVSPDAAQASGFASGASPMPLDHDGFFYAVFQKR 442
>gi|170697712|ref|ZP_02888799.1| sun protein [Burkholderia ambifaria IOP40-10]
gi|170137327|gb|EDT05568.1| sun protein [Burkholderia ambifaria IOP40-10]
Length = 462
Score = 292 bits (748), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 139/336 (41%), Positives = 212/336 (63%), Gaps = 28/336 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR F R++ + + + + + WNY WWI+ VK +P+ W+ IL G ++
Sbjct: 146 LVNAVLRRFQRER-DALVAALQDDPVARWNYRPWWIDAVKRAWPD--AWQAILAAGERQG 202
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N R+ ++ +Y L+ +G++ T IG A++L + + + +IP F +G S+QDA
Sbjct: 203 PLTLRVNARRASVDAYLDTLRANGIDATAIGRHAVRLASALPVDRIPGFADGVVSVQDAG 262
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAA L R GM VLDAC+APGGKT H+LE+A ++++++++ +R I ENL RL+L
Sbjct: 263 AQLAAEWLGARDGMRVLDACAAPGGKTGHILELAGAEVVALESDATRAARIGENLARLSL 322
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A + + D + +Y + FDRILAD+PC+ SG+VRR+PDI W
Sbjct: 323 AADVRVGDAGAPDA----------------WYDGRPFDRILADVPCSASGIVRRHPDIRW 366
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR+ DI L +IL LW ++KPGG+LL+VTCS++ EE E QA F +D++RL
Sbjct: 367 LRREADIAALVAEQRRILTALWPLVKPGGELLYVTCSIFPEEGELQARWFEAACEDAVRL 426
Query: 301 NSPGQLL---------PTVNKKQDYDGFFYSLFQKR 327
++PGQLL +++ D+DGFFY+ FQKR
Sbjct: 427 DAPGQLLPGGVPAGAAGALDQNTDHDGFFYARFQKR 462
>gi|309780267|ref|ZP_07675018.1| ribosomal RNA small subunit methyltransferase B [Ralstonia sp.
5_7_47FAA]
gi|404394867|ref|ZP_10986670.1| ribosomal RNA small subunit methyltransferase B [Ralstonia sp.
5_2_56FAA]
gi|308920970|gb|EFP66616.1| ribosomal RNA small subunit methyltransferase B [Ralstonia sp.
5_7_47FAA]
gi|348613931|gb|EGY63500.1| ribosomal RNA small subunit methyltransferase B [Ralstonia sp.
5_2_56FAA]
Length = 443
Score = 292 bits (748), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 141/342 (41%), Positives = 213/342 (62%), Gaps = 34/342 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
M+N +LR FLR++ + + M + NYP+WWI+ V+ YP+ W+ IL G+++P
Sbjct: 120 MVNGVLRRFLREQHALV-ADMQADPSAATNYPMWWIDAVRSAYPD--AWQTILAAGNRRP 176
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
P+ LR+N R+ + +Y L ++G++ IG A++L + +S++P F +G S+QDA
Sbjct: 177 PMVLRVNPRRIAVSAYLARLAEAGIDAERIGEQAVRLARAVPVSELPGFADGAVSVQDAG 236
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLN 179
AQLAA LD+ G VLDAC+APGGKT HLLE+AD + + +++++ +R I ENL RLN
Sbjct: 237 AQLAATFLDVAPGQRVLDACAAPGGKTGHLLELADGLDVTALESDAARAVRIHENLARLN 296
Query: 180 LKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIP 239
AT+ + D +K + ++ + FDRILAD+PC+ +G+VRR+PDI
Sbjct: 297 QSATICVGDAAKPDT----------------WWDGRPFDRILADVPCSAAGIVRRHPDIR 340
Query: 240 WLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIR 299
WLRR D+K L+ I+ LW LKPGGKL++VTCS++ E E+QA F ++ +D+IR
Sbjct: 341 WLRRPADLKALAGLQRDIVRALWACLKPGGKLVYVTCSIFPTEGEDQAQWFERHLEDAIR 400
Query: 300 LNSPGQLLPTVNKKQ--------------DYDGFFYSLFQKR 327
L++PGQLLP D+DGFFY++FQKR
Sbjct: 401 LHAPGQLLPVSPDAAQTSGFAAGASPLPLDHDGFFYAVFQKR 442
>gi|348618342|ref|ZP_08884870.1| 16S rRNA methyltransferase B (sun protein) [Candidatus
Glomeribacter gigasporarum BEG34]
gi|347816389|emb|CCD29582.1| 16S rRNA methyltransferase B (sun protein) [Candidatus
Glomeribacter gigasporarum BEG34]
Length = 509
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 138/328 (42%), Positives = 209/328 (63%), Gaps = 20/328 (6%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR FLR + ++ K+ + N + WNYP WWI+ V+ +P W+ IL G+ P
Sbjct: 201 LVNAVLRRFLRMRAQMLKAVLRN-PVARWNYPRWWIDAVRAAWP--VHWEEILSAGNTHP 257
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
P+TLR+N R+T + Y + L+ + AI+L P + ++P F G S+QDA
Sbjct: 258 PMTLRVNARRTNVAHYLEYLRARHISALAADEYAIQLTRPRPVEQLPGFKEGLVSVQDAG 317
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQ AA LL++R G+ VLDAC+APGGKT HLLE+A+++L+++D + +R I NL+RL L
Sbjct: 318 AQCAAKLLNVRDGLRVLDACAAPGGKTGHLLELANLELVALDIDGARAARIDANLQRLRL 377
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
+AT+ + D ++ +++ + FDRIL D PCTGSGV RR+PD+ W
Sbjct: 378 RATVCVGDAAQPA----------------QWWDGRRFDRILLDAPCTGSGVARRHPDLRW 421
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR +DI +L+ ++L +W +L GG+LL+ TCS++ EE E QA F + D++RL
Sbjct: 422 LRRASDIAQLAARQQQMLRAVWPLLNTGGELLYSTCSVFPEEGEAQARAFERAASDAVRL 481
Query: 301 NSPGQLLPTVN-KKQDYDGFFYSLFQKR 327
+PGQLLP+V +Q++DGFFY+ F KR
Sbjct: 482 PAPGQLLPSVTPAEQNHDGFFYARFLKR 509
>gi|115353229|ref|YP_775068.1| sun protein [Burkholderia ambifaria AMMD]
gi|115283217|gb|ABI88734.1| sun protein [Burkholderia ambifaria AMMD]
Length = 462
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 140/336 (41%), Positives = 212/336 (63%), Gaps = 28/336 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR F R++ + + + + + WNY WWI+ VK +P+ W+ IL G ++
Sbjct: 146 LVNAVLRRFQRER-DALVAALRDDPVARWNYRPWWIDAVKRAWPD--AWQAILAAGERQG 202
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N R+ ++ +Y L+ +G++ T IG A++L + + + +IP F +G S+QDA
Sbjct: 203 PLTLRVNARRASVDAYLDTLRANGIDATAIGRHAVRLASALPVDRIPGFADGVVSVQDAG 262
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAA L R GM VLDAC+APGGKT H+LE+A ++++++++ +R I ENL RL+L
Sbjct: 263 AQLAAEWLGARDGMRVLDACAAPGGKTGHILELAGAEVVALESDATRAARIGENLARLSL 322
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A + + D + +Y + FDRILAD+PC+ SG+VRR+PDI W
Sbjct: 323 TADVRVGDAGAPDA----------------WYDGRPFDRILADVPCSASGIVRRHPDIRW 366
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR+ DI L +IL LW ++KPGG+LL+VTCS++ EE E QA F +D++RL
Sbjct: 367 LRREADIAALVAEQRRILTALWPLVKPGGELLYVTCSIFPEEGELQARWFEAACEDAVRL 426
Query: 301 NSPGQLLPTV---------NKKQDYDGFFYSLFQKR 327
++PGQLLP ++ D+DGFFY+ FQKR
Sbjct: 427 DAPGQLLPGGVPAGAAGARDQTTDHDGFFYARFQKR 462
>gi|194291224|ref|YP_002007131.1| 16S rRNA m5c967 methyltransferase,
s-adenosyl-l-methionine-dependent [Cupriavidus
taiwanensis LMG 19424]
gi|193225059|emb|CAQ71070.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Cupriavidus
taiwanensis LMG 19424]
Length = 477
Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 138/349 (39%), Positives = 210/349 (60%), Gaps = 41/349 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR FLR++ + +++ ++ WN P WW+ ++ YP+ QW + + +P
Sbjct: 147 LVNAVLRRFLRERKALL-AEVNRDEQARWNLPPWWLRLLREAYPD--QWMALAASANVRP 203
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
P+T+R+N + ++ Y L +GL ++GP A++L + ++++P F G S+QDA
Sbjct: 204 PMTVRVNTARVSVPQYRTDLANAGLAGHVVGPQAVRLVRAVPVNQLPGFAEGVVSVQDAG 263
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAAPLL++ GM VLDAC+APGGKT HLLE+ADI++ +V+++ R I ENL RL
Sbjct: 264 AQLAAPLLEVADGMRVLDACAAPGGKTGHLLELADIEVTAVESDPQRATRIGENLARLGK 323
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A +++ D S+ ++ + FDRILAD+PC+ SG+VRR+PDI W
Sbjct: 324 SAKIVVGDASRPA----------------DWWDGQPFDRILADVPCSASGIVRRHPDIRW 367
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR+ DI +L +I++ LW +LKPGG L++VTCS++ E EEQA F + D+IRL
Sbjct: 368 LRRETDIARLITEQRRIVSQLWPLLKPGGILVYVTCSIFPTEGEEQARWFGEQLADAIRL 427
Query: 301 NSPGQLLPTVNKK----------------------QDYDGFFYSLFQKR 327
+PGQLLP + D+DGFFY+ FQKR
Sbjct: 428 QAPGQLLPGTHATLAAGADGDKATLDSSTDGTSLPSDHDGFFYARFQKR 476
>gi|393775079|ref|ZP_10363393.1| 16s rrna s-adenosyl-l-methionine-dependent [Ralstonia sp. PBA]
gi|392717656|gb|EIZ05216.1| 16s rrna s-adenosyl-l-methionine-dependent [Ralstonia sp. PBA]
Length = 450
Score = 291 bits (744), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 140/343 (40%), Positives = 205/343 (59%), Gaps = 35/343 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
M+NAILR R++ + + ++ + WNYP WWI V+ +P+ W++IL G+ +P
Sbjct: 126 MVNAILRRLQRERASLDMALADDV-VAQWNYPSWWIEAVRDAWPD--DWQHILQAGNVRP 182
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR++ + T+ Y + L L +G A++L TP+ +++IP F G S+QDA
Sbjct: 183 PLTLRVDAARVTVPDYLQQLASHALGGRQVGERAVRLDTPVPVTRIPGFAEGLVSVQDAG 242
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQ AA LLD++ G VLDAC+APGGK+ H+LE+A ++L ++D++ RL I ENL RL
Sbjct: 243 AQHAAALLDLQPGQRVLDACAAPGGKSGHILELAPVQLTALDSDAVRLRRIDENLARLGR 302
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A +I D + ++ + FDRILAD+PC+ SG+VRR+PDI W
Sbjct: 303 SANVIAGDAGRPET----------------WWDGQPFDRILADVPCSASGIVRRHPDIRW 346
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR D+ +L +I++ LW L PGGKLL+VTCS++ E E+QA F + +D+IRL
Sbjct: 347 LRRPEDLPQLQAVQRRIVSALWTTLAPGGKLLYVTCSIFPTEGEQQARWFETHLQDAIRL 406
Query: 301 NSPGQLLPTVNKKQ----------------DYDGFFYSLFQKR 327
+PGQLLP D+DGF+Y+LFQKR
Sbjct: 407 QAPGQLLPQSGTPAEPVADPPAGAAHDAMGDHDGFYYALFQKR 449
>gi|312797598|ref|YP_004030520.1| 16S rRNA m(5)C 967 methyltransferase [Burkholderia rhizoxinica HKI
454]
gi|312169373|emb|CBW76376.1| 16S rRNA m(5)C 967 methyltransferase (EC 2.1.1.-) [Burkholderia
rhizoxinica HKI 454]
Length = 460
Score = 290 bits (742), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 140/343 (40%), Positives = 214/343 (62%), Gaps = 35/343 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR +R + + M + + WNYP WWI+ ++ T+P+ Q +L+VG+
Sbjct: 137 LVNAVLRNMVRSRPALLAEAMLD-PVTRWNYPRWWIDALQRTWPDDAQ--RLLEVGNAHA 193
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLET---TIIGPLAIKLHTPISISKIPKFFNGFCSIQ 117
P+TLR+N+R+T + +Y + L+ SG++ + A+ L P+ + ++P F G S+Q
Sbjct: 194 PMTLRVNRRQTDVATYLERLRTSGIDALRNSACPDTALTLREPMPVERLPGFAQGTVSVQ 253
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKR 177
DA AQ AA LLD+R M VLDAC+APGGKT HLLE ADI+L+++D++ +R I ENL R
Sbjct: 254 DAGAQRAAALLDVRDRMRVLDACAAPGGKTGHLLECADIELVALDSDAARAARIKENLAR 313
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L+A++ + D + + +++ + FDRILAD+PC+ SG+VRR+PD
Sbjct: 314 LKLRASVQIGDAGEPS----------------QWHDGRRFDRILADVPCSASGIVRRHPD 357
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR DI L +I+ LW +L+ GG+LL+VTCS++ EE E+QA F +D+
Sbjct: 358 IRWLRRSTDIIALVAEQRRIVQALWPLLERGGQLLYVTCSIFPEEGEQQAAWFEHALEDA 417
Query: 298 IRLNSPGQLLPTVNKKQDY-------------DGFFYSLFQKR 327
+RL++PGQ+LPT + D+ DGFFY+ FQKR
Sbjct: 418 VRLDAPGQILPTAARSGDHCDAHRDARLDLDQDGFFYARFQKR 460
>gi|413963939|ref|ZP_11403166.1| 16S rRNA methyltransferase B [Burkholderia sp. SJ98]
gi|413929771|gb|EKS69059.1| 16S rRNA methyltransferase B [Burkholderia sp. SJ98]
Length = 472
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 141/351 (40%), Positives = 209/351 (59%), Gaps = 43/351 (12%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR FLR++ ++ + + WNYP WWI+ VK P+ W+ IL+ G+ +
Sbjct: 141 LVNAVLRNFLRER-DMLIDEARTSEVARWNYPQWWIDAVKRGQPD--AWERILEAGNAQG 197
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N R ++ L+ + +E G A++L TP+ + +IP F G S+QDA
Sbjct: 198 PLTLRVNARHASVDDCLARLRDARIEADAAGLHAVRLRTPMPVDRIPGFDEGVVSVQDAG 257
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAA LL ++ GM VLDAC+APGGKT H+LE+A++ LI+++++ R I +NL+RL L
Sbjct: 258 AQLAAQLLGVKDGMRVLDACAAPGGKTGHILELANVDLIALESDAERSGRIGQNLQRLKL 317
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A + + D + +++ FDRILAD+PC+ SG+VRR+PDI W
Sbjct: 318 DAQIKIGD----------------AGDPAQWFDGATFDRILADVPCSASGIVRRHPDIRW 361
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR +DI L +I++ LW ++ GG+LL+VTCS++ EE EEQA F H+D++RL
Sbjct: 362 LRRASDIDALVAEQRRIVSALWPLVAKGGELLYVTCSIFPEEGEEQARWFGTAHEDAVRL 421
Query: 301 NSPGQLLPT------------------------VNKKQDYDGFFYSLFQKR 327
++PGQLLPT D+DGFFY+ FQKR
Sbjct: 422 DAPGQLLPTAARASAVAAQGSPDSTNLASPHRDAETLADHDGFFYARFQKR 472
>gi|421483678|ref|ZP_15931251.1| methyltransferase [Achromobacter piechaudii HLE]
gi|400197961|gb|EJO30924.1| methyltransferase [Achromobacter piechaudii HLE]
Length = 422
Score = 289 bits (739), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 135/330 (40%), Positives = 209/330 (63%), Gaps = 19/330 (5%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
M+NA LR FLR++ + ++ + + E+ WN+P WW+ Q+ + YP QW+ IL +
Sbjct: 108 MLNACLRRFLRERAAL-EAAVADSPEAQWNHPGWWVKQLGVAYPQ--QWREILASANVPA 164
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N+R+ + +++GL +G + + +P ++++P F G+ S+QDA
Sbjct: 165 PLTLRVNRRRASREQVLAAFQEAGLSAEPVGQAGLVMSSPKPVTQLPGFAEGWWSVQDAG 224
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAA LL GM VLDACSAPGGKT HLLE+ADI L+++D + RL + +NL RL L
Sbjct: 225 AQLAAELLAPADGMRVLDACSAPGGKTAHLLELADIDLLALDADGERLERVEQNLDRLGL 284
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
+ +++ +K ++ ++ K FD +LAD+PCT SG+VRR+PDI W
Sbjct: 285 AS-------NRVQMKA------ADASDLDAWWDGKPFDAVLADVPCTASGIVRRHPDIRW 331
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR+ND+++ + KIL++LW+ + PGG+LL+VTCS++ E QA+ F + H ++ RL
Sbjct: 332 LRRENDVRRTATLQTKILDSLWQTVAPGGRLLYVTCSVFPIEGARQALEFLQRHPEAQRL 391
Query: 301 NSPGQLLPT---VNKKQDYDGFFYSLFQKR 327
++PGQLLP +DGFFY+LF K+
Sbjct: 392 DAPGQLLPVAVDATPAAQHDGFFYALFAKQ 421
>gi|293602344|ref|ZP_06684790.1| RNA methyltransferase Sun [Achromobacter piechaudii ATCC 43553]
gi|292819106|gb|EFF78141.1| RNA methyltransferase Sun [Achromobacter piechaudii ATCC 43553]
Length = 445
Score = 289 bits (739), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 136/331 (41%), Positives = 207/331 (62%), Gaps = 19/331 (5%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
M+NA LR FLR++ + ++ + + E+ WN+P WW+ Q+ I YP W+ IL+ +
Sbjct: 131 MLNACLRRFLRERAAL-EAAVADSPEAQWNHPGWWVKQLGIAYPQ--DWQRILESANVPA 187
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N+R+ T + +GL+ +G + + +P ++++P F G+ S+QDA
Sbjct: 188 PLTLRVNRRRATRDQVLAAFQDAGLQAEPVGQAGVVVGSPKPVTQLPGFAEGWWSVQDAG 247
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAA LL GM VLDACSAPGGKT HLLE+ADI L+++D + RL + +NL RL L
Sbjct: 248 AQLAAELLAPADGMRVLDACSAPGGKTAHLLELADIDLVALDADGERLERVEQNLDRLGL 307
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
+ +++L+ + K FD +LAD+PCT SG+VRR+PDI W
Sbjct: 308 AS-------DRVHLEAADAADLDAW------WDGKPFDAVLADVPCTASGIVRRHPDIRW 354
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR+ND+++ + +IL++LWK + PGG+LL+VTCS++ E QA+ F + H ++ RL
Sbjct: 355 LRRENDVRRTATLQARILDSLWKTVAPGGRLLYVTCSVFPIEGARQALEFMQRHPEAQRL 414
Query: 301 NSPGQLLPT---VNKKQDYDGFFYSLFQKRK 328
++PGQLLP + +DGFFY+LF K+
Sbjct: 415 DAPGQLLPVALDATPAEQHDGFFYALFAKQS 445
>gi|420247907|ref|ZP_14751289.1| ribosomal RNA small subunit methyltransferase RsmB, partial
[Burkholderia sp. BT03]
gi|398069795|gb|EJL61127.1| ribosomal RNA small subunit methyltransferase RsmB, partial
[Burkholderia sp. BT03]
Length = 449
Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 137/313 (43%), Positives = 204/313 (65%), Gaps = 17/313 (5%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR FLR++ E + N ++WNYP+WWI+ V+ +P+ W+++L VG+ +
Sbjct: 147 LVNAVLRNFLRER-EALLADAQNDAVAHWNYPVWWIDAVRNAWPD--TWQDMLAVGNSQG 203
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N R++T+ +Y + L++ + G A++L TP+ + +IP F G S+QDA
Sbjct: 204 PLTLRVNARRSTVEAYLQTLREHQIAAIQAGDHAVRLDTPMPVDRIPGFSEGVVSVQDAG 263
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAA L +R GM VLDAC+APGGKT HLLE+ADI LI+++++ +R I ENL+RL L
Sbjct: 264 AQLAAQWLGVRDGMRVLDACAAPGGKTGHLLELADIDLIALESDATRARRIGENLQRLGL 323
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A + + D +++ + FDRILAD+PC+ SG+VRR+ DI W
Sbjct: 324 HAHVRVGDAGN--------------PAQWQDAADLPFDRILADVPCSASGIVRRHADIRW 369
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR +DI L + +IL LW ++K GG+LL+VTCS++ EE E QA F H D++RL
Sbjct: 370 LRRASDIPALVEEQRRILEALWPLVKTGGELLYVTCSIFPEEGELQAQWFGNQHADAVRL 429
Query: 301 NSPGQLLPTVNKK 313
++PGQLLP V +
Sbjct: 430 DAPGQLLPAVARA 442
>gi|167568296|ref|ZP_02361170.1| sun protein [Burkholderia oklahomensis C6786]
Length = 470
Score = 288 bits (737), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 138/341 (40%), Positives = 208/341 (60%), Gaps = 33/341 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR FLR++ + ++ + + WNY WWI+ V+ +P+ W+ +L G
Sbjct: 149 LVNAVLRRFLRERAAWLE-RLQSDRRARWNYETWWIDAVERAWPD--AWQRMLAAGDAPG 205
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N R+ +Y +L+ ++ IG AI+L +P+ + +IP F +G S+QDA
Sbjct: 206 PLTLRVNARRMAADAYLDVLRAEQIDAEKIGRHAIRLASPLPVERIPGFVDGIVSVQDAG 265
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAA L R GM VLDAC+APGGKT H+LE+AD ++++++++ +R I ENL RL+L
Sbjct: 266 AQLAAEWLGARDGMRVLDACAAPGGKTGHILELADAEVVALESDPARAPRIGENLARLSL 325
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A + + D + +++ + FDRILAD+PC+ SG+VRR+PDI W
Sbjct: 326 AADVRIGD----------------AGDPAQWHDGRPFDRILADVPCSASGIVRRHPDIRW 369
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR DI L +IL LW ++KPGG+LL+ TCS++ EE E QA F ++D++RL
Sbjct: 370 LRRAADIPALVDEQRRILAALWPLVKPGGELLYATCSIFPEEGELQARWFGDAYQDAVRL 429
Query: 301 NSPGQLLP--------------TVNKKQDYDGFFYSLFQKR 327
++PGQLLP + D+DGFFY+ FQKR
Sbjct: 430 DAPGQLLPQGASGGAPAVGGSSEPGRHVDHDGFFYARFQKR 470
>gi|167561034|ref|ZP_02353950.1| sun protein [Burkholderia oklahomensis EO147]
Length = 470
Score = 286 bits (732), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 139/341 (40%), Positives = 208/341 (60%), Gaps = 33/341 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR FLR++ K ++ + + WNY WWI+ V+ +P+ W+ +L G
Sbjct: 149 LVNAVLRRFLRERAAWLK-RLQSDRRARWNYETWWIDAVERAWPD--AWQRMLAAGDAPG 205
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N R+ T +Y +L+ ++ IG AI+L +P+ + +IP F +G S+QDA
Sbjct: 206 PLTLRVNARRMTADAYLDVLRAEQIDAEKIGRHAIRLASPLPVERIPGFVDGIVSVQDAG 265
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAA L R GM VLDAC+APGGKT H+LE+AD ++++++++ +R I ENL RL+L
Sbjct: 266 AQLAAEWLGARDGMRVLDACAAPGGKTGHILELADAEVVALESDPARAPRIGENLARLSL 325
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A + + D + +++ + FDRILAD+PC+ SG+VRR+PDI W
Sbjct: 326 AADVRIGD----------------AGDPAQWHDGRPFDRILADVPCSASGIVRRHPDIRW 369
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR DI L +IL LW ++K GG+LL+ TCS++ EE E QA F ++D++RL
Sbjct: 370 LRRAADIPALVAEQRRILAALWPLVKLGGELLYATCSIFPEEGELQARWFGGAYQDAVRL 429
Query: 301 NSPGQLLP--------------TVNKKQDYDGFFYSLFQKR 327
++PGQLLP + D+DGFFY+ FQKR
Sbjct: 430 DAPGQLLPQGASGGAPAVGGSSEPGRHVDHDGFFYARFQKR 470
>gi|359799922|ref|ZP_09302474.1| ribosomal RNA small subunit methyltransferase B [Achromobacter
arsenitoxydans SY8]
gi|359362034|gb|EHK63779.1| ribosomal RNA small subunit methyltransferase B [Achromobacter
arsenitoxydans SY8]
Length = 422
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 136/330 (41%), Positives = 203/330 (61%), Gaps = 19/330 (5%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
M+NA LR FLR++ + ++ + + E+ WN+P WW+ Q+ + YP QW+ IL +
Sbjct: 108 MLNACLRRFLRERAAL-EAAVADSPEAKWNHPGWWVKQLTVAYPR--QWQEILAAANVPA 164
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N+R+ + + +GL +G + L TP ++++P F G+ S+QDA
Sbjct: 165 PLTLRVNRRRASREQVLAAFQDAGLAAEPVGQSGLVLATPKPVTQLPGFAEGWWSVQDAG 224
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAA LL + GM VLDACSAPGGKT HLLE+ADI L+++D + RL + +NL+RL L
Sbjct: 225 AQLAAELLAPKDGMRVLDACSAPGGKTAHLLELADINLLALDADADRLARVEQNLERLGL 284
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
+ + +K K FD +LAD+PCT SG+VRR+PDI W
Sbjct: 285 AG-------AHVQVKAADAADLDAWW------DGKPFDAVLADVPCTASGIVRRHPDIRW 331
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR+ND+++ + +IL++LW + PGG+LL+VTCS++ E QA+ F + H ++ RL
Sbjct: 332 LRRENDLRRTAALQARILDSLWATVAPGGRLLYVTCSVFPIEGTRQALEFLQRHPEATRL 391
Query: 301 NSPGQLLPT---VNKKQDYDGFFYSLFQKR 327
++PGQLLP +DGFFY+LF K+
Sbjct: 392 DAPGQLLPVAVDATPAGQHDGFFYALFAKQ 421
>gi|237749113|ref|ZP_04579593.1| tRNA and rRNA cytosine-C5-methylase [Oxalobacter formigenes OXCC13]
gi|229380475|gb|EEO30566.1| tRNA and rRNA cytosine-C5-methylase [Oxalobacter formigenes OXCC13]
Length = 443
Score = 283 bits (725), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 164/327 (50%), Positives = 221/327 (67%), Gaps = 21/327 (6%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR FLR+K EI K + WNYP WWI + + YP W++IL VG+ P
Sbjct: 138 LVNAVLRRFLREK-EILLEKSNLSLTAKWNYPSWWIKETRRIYPK--NWESILHVGNTAP 194
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N+RKTT+ Y L+ +G T IGP AI+L P+ + +IP F G S+QDAA
Sbjct: 195 PLTLRVNKRKTTVEGYLADLEAAGHPATAIGPYAIRLDNPLPVYRIPGFSEGLVSVQDAA 254
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAAPLL+++ GM VLDAC+APGGK+ H+LE+ADI L ++D+ RL I ENL RL L
Sbjct: 255 AQLAAPLLELQDGMRVLDACAAPGGKSGHMLEMADIDLHALDSEPERLKKIDENLTRLQL 314
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
AT++ D SK N ++ FD ILAD+PCT SG++RR+PDI W
Sbjct: 315 HATIMAGDASKKN-----------------WWDGNAFDCILADVPCTASGIIRRHPDIRW 357
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR D K+L+ S +IL+NLW++LKPGGKLL TCS+W ESE QA F+K + ++ RL
Sbjct: 358 LRRPEDAKELAVISARILDNLWELLKPGGKLLLATCSVWPLESEWQADAFAKRN-NAARL 416
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQKR 327
++PGQL PT +K +D+DG FY+LF+K+
Sbjct: 417 DAPGQLFPTSDKLKDHDGLFYALFKKQ 443
>gi|167917035|ref|ZP_02504126.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei BCC215]
Length = 469
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 139/341 (40%), Positives = 207/341 (60%), Gaps = 33/341 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR FLR++ E + ++ + WNY WWI+ V+ +P+ W+ IL G
Sbjct: 148 LVNAVLRRFLRERAEWLE-RLQADRRALWNYEPWWIDAVERAWPD--AWQRILAAGDAPG 204
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N R+ T +Y L+ ++ IG AI+L + + +IP F +G S+QDA
Sbjct: 205 PLTLRVNARRMTADAYLDTLRAERIDAEKIGLHAIRLASARPVERIPGFADGIVSVQDAG 264
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAA L R GM VLDAC+APGGKT H+LE+A ++++++++ +R I ENL RL+L
Sbjct: 265 AQLAAEWLGARDGMRVLDACAAPGGKTGHILELAHAEVVALESDPARAPRIGENLARLSL 324
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A + + D + + +++ + FDR+LAD+PC+ SG+VRR+PDI W
Sbjct: 325 TADVRVGDAA----------------DPAQWHDGRPFDRVLADVPCSASGIVRRHPDIRW 368
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR DI L +IL+ LW ++KPGG+LL+VTCS++ EE E QA F +D++RL
Sbjct: 369 LRRAADIPALVAEQRRILSALWPLVKPGGELLYVTCSIFPEEGELQARWFGDACQDAVRL 428
Query: 301 NSPGQLLP--------------TVNKKQDYDGFFYSLFQKR 327
++PGQLLP + D+DGFFY+ FQKR
Sbjct: 429 DAPGQLLPQGATGGAPAVGGSGESGRHVDHDGFFYARFQKR 469
>gi|167617463|ref|ZP_02386094.1| sun protein [Burkholderia thailandensis Bt4]
gi|257140661|ref|ZP_05588923.1| sun protein [Burkholderia thailandensis E264]
Length = 470
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 136/341 (39%), Positives = 207/341 (60%), Gaps = 33/341 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR FLR++ ++ ++ + + WNY WWI+ V+ +P+ W IL G
Sbjct: 149 LVNAVLRRFLRERA-VWLERLQSDRRARWNYEPWWIDAVERAWPD--AWPRILASGDAPG 205
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N R+ T +Y +L+ ++ +G AI+L + + + +IP F +G S+QDA
Sbjct: 206 PLTLRVNARRMTADAYLDVLRAERIDAEKVGRHAIRLASALPVERIPGFADGIVSVQDAG 265
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAA L R GM VLDAC+APGGKT H+LE+A ++++++++ +R I ENL RL+L
Sbjct: 266 AQLAAEWLGARDGMRVLDACAAPGGKTGHILELAHAEVVALESDPARAPRIGENLARLSL 325
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A + + D + +++ + FDR+LAD+PC+ SG+VRR+PDI W
Sbjct: 326 AADVRVGD----------------AGDPSQWHDGRAFDRVLADVPCSASGIVRRHPDIRW 369
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR DI L +IL+ LW ++KPGG+LL+ TCS++ EE E QA F +D++RL
Sbjct: 370 LRRAADIPALVAEQRRILSALWPLVKPGGELLYATCSIFPEEGELQARWFGDACQDAVRL 429
Query: 301 NSPGQLLPTV--------------NKKQDYDGFFYSLFQKR 327
++PGQLLP + D+DGFFY+ FQKR
Sbjct: 430 DAPGQLLPQGATGGAPAAGGSDEPGRHVDHDGFFYARFQKR 470
>gi|83719791|ref|YP_440691.1| sun protein [Burkholderia thailandensis E264]
gi|83653616|gb|ABC37679.1| sun protein [Burkholderia thailandensis E264]
Length = 571
Score = 281 bits (719), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 136/341 (39%), Positives = 207/341 (60%), Gaps = 33/341 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR FLR++ ++ ++ + + WNY WWI+ V+ +P+ W IL G
Sbjct: 250 LVNAVLRRFLRERA-VWLERLQSDRRARWNYEPWWIDAVERAWPD--AWPRILASGDAPG 306
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N R+ T +Y +L+ ++ +G AI+L + + + +IP F +G S+QDA
Sbjct: 307 PLTLRVNARRMTADAYLDVLRAERIDAEKVGRHAIRLASALPVERIPGFADGIVSVQDAG 366
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAA L R GM VLDAC+APGGKT H+LE+A ++++++++ +R I ENL RL+L
Sbjct: 367 AQLAAEWLGARDGMRVLDACAAPGGKTGHILELAHAEVVALESDPARAPRIGENLARLSL 426
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A + + D + +++ + FDR+LAD+PC+ SG+VRR+PDI W
Sbjct: 427 AADVRVGD----------------AGDPSQWHDGRAFDRVLADVPCSASGIVRRHPDIRW 470
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR DI L +IL+ LW ++KPGG+LL+ TCS++ EE E QA F +D++RL
Sbjct: 471 LRRAADIPALVAEQRRILSALWPLVKPGGELLYATCSIFPEEGELQARWFGDACQDAVRL 530
Query: 301 NSPGQLLPTV--------------NKKQDYDGFFYSLFQKR 327
++PGQLLP + D+DGFFY+ FQKR
Sbjct: 531 DAPGQLLPQGATGGAPAAGGSDEPGRHVDHDGFFYARFQKR 571
>gi|237810344|ref|YP_002894795.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei MSHR346]
gi|237505926|gb|ACQ98244.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei MSHR346]
Length = 469
Score = 281 bits (719), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 139/341 (40%), Positives = 207/341 (60%), Gaps = 33/341 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR FLR++ + ++ + WNY WWI+ V+ +P+ W+ IL VG
Sbjct: 148 LVNAVLRRFLRERAAWLE-RLQADRRALWNYEPWWIDAVERAWPD--AWQRILAVGDAPG 204
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N R+ T +Y L+ ++ IG AI+L + + +IP F +G S+QDA
Sbjct: 205 PLTLRVNARRMTADAYLDTLRAERIDAEKIGLHAIRLASARPVERIPGFADGIVSVQDAG 264
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAA L R GM VLDAC+APGGKT H+LE+A ++++++++ +R I ENL RL+L
Sbjct: 265 AQLAAEWLGARDGMRVLDACAAPGGKTGHILELAHAEVVALESDPARAPRIGENLARLSL 324
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A + + D + + +++ + FDR+LAD+PC+ SG+VRR+PDI W
Sbjct: 325 TADVRVGDAA----------------DPAQWHDGRPFDRVLADVPCSASGIVRRHPDIRW 368
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR DI L +IL+ LW ++KPGG+LL+VTCS++ EE E QA F +D++RL
Sbjct: 369 LRRAADIPALVAEQRRILSALWPLVKPGGELLYVTCSIFPEEGELQARWFGDACQDAVRL 428
Query: 301 NSPGQLLP--------------TVNKKQDYDGFFYSLFQKR 327
++PGQLLP + D+DGFFY+ FQKR
Sbjct: 429 DAPGQLLPQGATGGAPAVGGSGESGRHVDHDGFFYARFQKR 469
>gi|297537409|ref|YP_003673178.1| sun protein [Methylotenera versatilis 301]
gi|297256756|gb|ADI28601.1| sun protein [Methylotenera versatilis 301]
Length = 439
Score = 281 bits (719), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 144/340 (42%), Positives = 214/340 (62%), Gaps = 33/340 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NAILR FLR+K ++ +K+ + + ++YP WW++++K+ YPN W+ +L+ G++ P
Sbjct: 118 LVNAILRNFLRQKAQL-AAKLKSSDVAVYSYPQWWVSKLKVQYPN--HWQGMLETGNQHP 174
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
P+TLR+N +K ++ Y +LL + +E IG A+ L P+ + KIP F +G S+QD
Sbjct: 175 PMTLRVNTQKISMQDYLQLLTRQDIEAKHIGAQALILANPVPVEKIPGFSDGIVSVQDLG 234
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAA LL+ + GM VLDAC APGGKT H+LE+AD+ L ++D++ RL + NL R+ L
Sbjct: 235 AQLAAYLLEAKVGMNVLDACCAPGGKTGHILELADVALTALDSDEVRLQRVQSNLSRMKL 294
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
KA L++ D S + + KT + FDRILAD+PC+ SG+VRR+ DI W
Sbjct: 295 KANLLVGDASMTDWWS-----DAKTAPQL-------FDRILADVPCSASGIVRRHVDIKW 342
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR+ DI ++ KIL NLW+ML GGKLL+VTCS++ EE++ Q F +N+ D+ +L
Sbjct: 343 LRREADIASFTRQQAKILANLWQMLAKGGKLLYVTCSVFNEENQGQVDNFLQNNADATQL 402
Query: 301 --------------NSPGQLLPTVNKKQDYDGFFYSLFQK 326
GQL+PT +DGFFY+L QK
Sbjct: 403 PFALPDNYAAAEITQINGQLIPT----NAHDGFFYALLQK 438
>gi|224826197|ref|ZP_03699300.1| sun protein [Pseudogulbenkiania ferrooxidans 2002]
gi|347538126|ref|YP_004845550.1| 16S rRNA methyltransferase B [Pseudogulbenkiania sp. NH8B]
gi|224601834|gb|EEG08014.1| sun protein [Pseudogulbenkiania ferrooxidans 2002]
gi|345641303|dbj|BAK75136.1| 16S rRNA methyltransferase B [Pseudogulbenkiania sp. NH8B]
Length = 416
Score = 280 bits (715), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 131/327 (40%), Positives = 207/327 (63%), Gaps = 24/327 (7%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR +LR++ E+ K+ + E+ +N+P WWI ++ YP W+ ILD+ ++ P
Sbjct: 114 LVNAVLRNYLRQRDEL-KAAVAADDEARYNHPRWWIKALRRHYPQ--DWQAILDMDNQHP 170
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
P+TLR+N+R +Y + L+ +G+E +G AI+L P+ + ++P F +G S+QD
Sbjct: 171 PMTLRVNRRHVEPAAYLQRLRDAGIEAECLGEEAIQLARPVGVRELPGFADGDVSVQDQG 230
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQ AA LD+R G+ VLDAC+APGGKTCH+LE+AD+ + ++D + +RL +++NL RL L
Sbjct: 231 AQQAAYRLDLRDGLRVLDACAAPGGKTCHMLELADLDVTALDVDETRLGRVADNLARLQL 290
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A L+ +D + ++ FDRILAD+PC+ SGVVRR+PDI W
Sbjct: 291 SARLVAAD----------------AGDTASWWDGVPFDRILADVPCSASGVVRRHPDIKW 334
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR D +L++ +++ LW +L GGK+L+ TCS++ EE+ EQ F H D++ L
Sbjct: 335 LRRPGDFAELARQQSALVDALWPLLASGGKMLYATCSIFPEENREQLAAFLARHADAVCL 394
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQKR 327
+ QLLP+ + +DGF+Y+L KR
Sbjct: 395 DDQ-QLLPS----EQHDGFYYALLAKR 416
>gi|126439349|ref|YP_001057209.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 668]
gi|167908993|ref|ZP_02496084.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 112]
gi|217424987|ref|ZP_03456483.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 576]
gi|254295711|ref|ZP_04963168.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 406e]
gi|126218842|gb|ABN82348.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 668]
gi|157805800|gb|EDO82970.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 406e]
gi|217392007|gb|EEC32033.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 576]
Length = 469
Score = 280 bits (715), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 138/341 (40%), Positives = 206/341 (60%), Gaps = 33/341 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR FLR++ + ++ + WNY WWI+ V+ +P+ W+ IL G
Sbjct: 148 LVNAVLRRFLRERAAWLE-RLQADRRALWNYEPWWIDAVERAWPD--AWQRILAAGDAPG 204
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N R+ T +Y L+ ++ IG AI+L + + +IP F +G S+QDA
Sbjct: 205 PLTLRVNARRMTADAYLDTLRAERIDAEKIGLHAIRLASARPVERIPGFADGIVSVQDAG 264
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAA L R GM VLDAC+APGGKT H+LE+A ++++++++ +R I ENL RL+L
Sbjct: 265 AQLAAEWLGARDGMRVLDACAAPGGKTGHILELAHAEVVALESDPARAPRIGENLARLSL 324
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A + + D + + +++ + FDR+LAD+PC+ SG+VRR+PDI W
Sbjct: 325 TADVRVGDAA----------------DPAQWHDGRPFDRVLADVPCSASGIVRRHPDIRW 368
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR DI L +IL+ LW ++KPGG+LL+VTCS++ EE E QA F +D++RL
Sbjct: 369 LRRAADIPALVAEQRRILSALWPLVKPGGELLYVTCSIFPEEGELQARWFGDACQDAVRL 428
Query: 301 NSPGQLLP--------------TVNKKQDYDGFFYSLFQKR 327
++PGQLLP + D+DGFFY+ FQKR
Sbjct: 429 DAPGQLLPQGATGGAPAVGGSGESGRHVDHDGFFYARFQKR 469
>gi|134284097|ref|ZP_01770791.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 305]
gi|134244549|gb|EBA44653.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 305]
Length = 624
Score = 280 bits (715), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 138/341 (40%), Positives = 206/341 (60%), Gaps = 33/341 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR FLR++ + ++ + WNY WWI+ V+ +P+ W+ IL G
Sbjct: 303 LVNAVLRRFLRERAAWLE-RLQADRRALWNYEPWWIDAVERAWPD--AWQRILAAGDAPG 359
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N R+ T +Y L+ ++ IG AI+L + + +IP F +G S+QDA
Sbjct: 360 PLTLRVNARRMTADAYLDTLRAERIDAEKIGLHAIRLASARPVERIPGFADGIVSVQDAG 419
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAA L R GM VLDAC+APGGKT H+LE+A ++++++++ +R I ENL RL+L
Sbjct: 420 AQLAAEWLGARDGMRVLDACAAPGGKTGHILELAHAEVVALESDPARAPRIDENLARLSL 479
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A + + D + + +++ + FDR+LAD+PC+ SG+VRR+PDI W
Sbjct: 480 TADVRVGDAA----------------DPAQWHDGRPFDRVLADVPCSASGIVRRHPDIRW 523
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR DI L +IL+ LW ++KPGG+LL+VTCS++ EE E QA F +D++RL
Sbjct: 524 LRRAADIPALVAEQRRILSALWPLVKPGGELLYVTCSIFPEEGELQARWFGDACQDAVRL 583
Query: 301 NSPGQLLP--------------TVNKKQDYDGFFYSLFQKR 327
++PGQLLP + D+DGFFY+ FQKR
Sbjct: 584 DAPGQLLPQGATGGAPAVGGSGESGRHVDHDGFFYARFQKR 624
>gi|53717766|ref|YP_106752.1| NOL1/NOP2/Sun family protein [Burkholderia pseudomallei K96243]
gi|53724953|ref|YP_101986.1| sun protein [Burkholderia mallei ATCC 23344]
gi|67642457|ref|ZP_00441213.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
mallei GB8 horse 4]
gi|121599506|ref|YP_994096.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
mallei SAVP1]
gi|124385742|ref|YP_001028242.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
mallei NCTC 10229]
gi|126451630|ref|YP_001064449.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 1106a]
gi|167003288|ref|ZP_02269077.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
mallei PRL-20]
gi|167717523|ref|ZP_02400759.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei DM98]
gi|167813639|ref|ZP_02445319.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 91]
gi|167843776|ref|ZP_02469284.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei B7210]
gi|242316376|ref|ZP_04815392.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 1106b]
gi|254176710|ref|ZP_04883367.1| sun protein [Burkholderia mallei ATCC 10399]
gi|254197181|ref|ZP_04903604.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei S13]
gi|254203667|ref|ZP_04910027.1| sun protein [Burkholderia mallei FMH]
gi|254208643|ref|ZP_04914991.1| sun protein [Burkholderia mallei JHU]
gi|254360303|ref|ZP_04976573.1| sun protein [Burkholderia mallei 2002721280]
gi|403516819|ref|YP_006650952.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei BPC006]
gi|418375564|ref|ZP_12965636.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 354a]
gi|418552174|ref|ZP_13117063.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 354e]
gi|52208180|emb|CAH34111.1| NOL1/NOP2/Sun family protein [Burkholderia pseudomallei K96243]
gi|52428376|gb|AAU48969.1| sun protein [Burkholderia mallei ATCC 23344]
gi|121228316|gb|ABM50834.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
mallei SAVP1]
gi|126225272|gb|ABN88812.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 1106a]
gi|147745179|gb|EDK52259.1| sun protein [Burkholderia mallei FMH]
gi|147750519|gb|EDK57588.1| sun protein [Burkholderia mallei JHU]
gi|148029543|gb|EDK87448.1| sun protein [Burkholderia mallei 2002721280]
gi|160697751|gb|EDP87721.1| sun protein [Burkholderia mallei ATCC 10399]
gi|169653923|gb|EDS86616.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei S13]
gi|238523614|gb|EEP87051.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
mallei GB8 horse 4]
gi|242139615|gb|EES26017.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 1106b]
gi|243061145|gb|EES43331.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
mallei PRL-20]
gi|385373535|gb|EIF78557.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 354e]
gi|385378234|gb|EIF82717.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 354a]
gi|403072463|gb|AFR14043.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei BPC006]
Length = 469
Score = 278 bits (712), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 137/341 (40%), Positives = 206/341 (60%), Gaps = 33/341 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR FLR++ + ++ + WNY WWI+ V+ +P+ W+ IL G
Sbjct: 148 LVNAVLRRFLRERAAWLE-RLQADRRALWNYEPWWIDAVERAWPD--AWQRILAAGDAPG 204
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N R+ T +Y L+ ++ IG AI+L + + +IP F +G S+QDA
Sbjct: 205 PLTLRVNARRMTADAYLDTLRAERIDAEKIGLHAIRLASARPVERIPGFADGIVSVQDAG 264
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQL+A L R GM VLDAC+APGGKT H+LE+A ++++++++ +R I ENL RL+L
Sbjct: 265 AQLSAEWLGARDGMRVLDACAAPGGKTGHILELAHAEVVALESDPARAPRIGENLARLSL 324
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A + + D + + +++ + FDR+LAD+PC+ SG+VRR+PDI W
Sbjct: 325 TADVRVGDAA----------------DPAQWHDGRPFDRVLADVPCSASGIVRRHPDIRW 368
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR DI L +IL+ LW ++KPGG+LL+VTCS++ EE E QA F +D++RL
Sbjct: 369 LRRAADIPALVAEQRRILSALWPLVKPGGELLYVTCSIFPEEGELQARWFGDACQDAVRL 428
Query: 301 NSPGQLLP--------------TVNKKQDYDGFFYSLFQKR 327
++PGQLLP + D+DGFFY+ FQKR
Sbjct: 429 DAPGQLLPQGATGGAPAVGGSGESGRHVDHDGFFYARFQKR 469
>gi|167736565|ref|ZP_02409339.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 14]
gi|167822184|ref|ZP_02453655.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 9]
gi|226194606|ref|ZP_03790201.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei Pakistan 9]
gi|254182248|ref|ZP_04888845.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 1655]
gi|254188214|ref|ZP_04894726.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei Pasteur 52237]
gi|254260319|ref|ZP_04951373.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 1710a]
gi|386860244|ref|YP_006273193.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 1026b]
gi|418537471|ref|ZP_13103111.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 1026a]
gi|418539601|ref|ZP_13105188.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 1258a]
gi|418545760|ref|ZP_13111003.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 1258b]
gi|157935894|gb|EDO91564.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei Pasteur 52237]
gi|184212786|gb|EDU09829.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 1655]
gi|225933307|gb|EEH29299.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei Pakistan 9]
gi|254219008|gb|EET08392.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 1710a]
gi|385350180|gb|EIF56732.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 1026a]
gi|385364227|gb|EIF69956.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 1258a]
gi|385366242|gb|EIF71875.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 1258b]
gi|385657372|gb|AFI64795.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 1026b]
Length = 469
Score = 278 bits (712), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 137/341 (40%), Positives = 206/341 (60%), Gaps = 33/341 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR FLR++ + ++ + WNY WWI+ V+ +P+ W+ IL G
Sbjct: 148 LVNAVLRRFLRERAAWLE-RLQADRRALWNYEPWWIDAVERAWPD--AWQRILAAGDAPG 204
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N R+ T +Y L+ ++ IG AI+L + + +IP F +G S+QDA
Sbjct: 205 PLTLRVNARRMTADAYLDTLRAERIDAEKIGLHAIRLASARPVERIPGFADGIVSVQDAG 264
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQL+A L R GM VLDAC+APGGKT H+LE+A ++++++++ +R I ENL RL+L
Sbjct: 265 AQLSAEWLGARDGMRVLDACAAPGGKTGHILELAHAEVVALESDPARAPRIGENLARLSL 324
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A + + D + + +++ + FDR+LAD+PC+ SG+VRR+PDI W
Sbjct: 325 TADVRVGDAA----------------DPAQWHDGRPFDRVLADVPCSASGIVRRHPDIRW 368
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR DI L +IL+ LW ++KPGG+LL+VTCS++ EE E QA F +D++RL
Sbjct: 369 LRRAADIPALVAEQRRILSALWPLVKPGGELLYVTCSIFPEEGELQARWFGDACQDAVRL 428
Query: 301 NSPGQLLP--------------TVNKKQDYDGFFYSLFQKR 327
++PGQLLP + D+DGFFY+ FQKR
Sbjct: 429 DAPGQLLPQGATGGAPAVGGSGESGRHVDHDGFFYARFQKR 469
>gi|76812251|ref|YP_331765.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 1710b]
gi|76581704|gb|ABA51179.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 1710b]
Length = 519
Score = 278 bits (712), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 137/341 (40%), Positives = 206/341 (60%), Gaps = 33/341 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR FLR++ + ++ + WNY WWI+ V+ +P+ W+ IL G
Sbjct: 198 LVNAVLRRFLRERAAWLE-RLQADRRALWNYEPWWIDAVERAWPD--AWQRILAAGDAPG 254
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N R+ T +Y L+ ++ IG AI+L + + +IP F +G S+QDA
Sbjct: 255 PLTLRVNARRMTADAYLDTLRAERIDAEKIGLHAIRLASARPVERIPGFADGIVSVQDAG 314
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQL+A L R GM VLDAC+APGGKT H+LE+A ++++++++ +R I ENL RL+L
Sbjct: 315 AQLSAEWLGARDGMRVLDACAAPGGKTGHILELAHAEVVALESDPARAPRIGENLARLSL 374
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A + + D + + +++ + FDR+LAD+PC+ SG+VRR+PDI W
Sbjct: 375 TADVRVGDAA----------------DPAQWHDGRPFDRVLADVPCSASGIVRRHPDIRW 418
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR DI L +IL+ LW ++KPGG+LL+VTCS++ EE E QA F +D++RL
Sbjct: 419 LRRAADIPALVAEQRRILSALWPLVKPGGELLYVTCSIFPEEGELQARWFGDACQDAVRL 478
Query: 301 NSPGQLLP--------------TVNKKQDYDGFFYSLFQKR 327
++PGQLLP + D+DGFFY+ FQKR
Sbjct: 479 DAPGQLLPQGATGGAPAVGGSGESGRHVDHDGFFYARFQKR 519
>gi|167579362|ref|ZP_02372236.1| sun protein [Burkholderia thailandensis TXDOH]
Length = 470
Score = 278 bits (711), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 135/341 (39%), Positives = 206/341 (60%), Gaps = 33/341 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR FLR++ ++ ++ + + WNY WWI+ V+ +P+ W IL G
Sbjct: 149 LVNAVLRRFLRER-TVWLERLQSDRRARWNYEPWWIDAVERAWPD--AWPRILASGDASG 205
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N R+ T +Y +L+ ++ +G AI+L + + + +IP F +G S+QDA
Sbjct: 206 PLTLRVNARRMTADAYLDVLRAERIDAEKVGRHAIRLASALPVERIPGFADGIVSVQDAG 265
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAA L R GM VLDAC+APGGKT H+LE+A ++++++++ +R I ENL RL+L
Sbjct: 266 AQLAAEWLGARDGMRVLDACAAPGGKTGHILELAHAEVVALESDPARAPRIGENLARLSL 325
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A + + D + +++ + FDR+LAD+PC+ SG+VRR+PDI W
Sbjct: 326 AADVRVGD----------------AGDPSQWHDGRAFDRVLADVPCSASGIVRRHPDIRW 369
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR DI L +IL+ LW ++KPGG+LL+ TCS++ EE E A F +D++RL
Sbjct: 370 LRRAADIPALVAEQRRILSALWPLVKPGGELLYATCSIFPEEGELLARWFGDACQDAVRL 429
Query: 301 NSPGQLLPTV--------------NKKQDYDGFFYSLFQKR 327
++PGQLLP + D+DGFFY+ FQKR
Sbjct: 430 DAPGQLLPQGATGGAPAAGGSDEPGRHVDHDGFFYARFQKR 470
>gi|167892276|ref|ZP_02479678.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 7894]
Length = 469
Score = 278 bits (711), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 137/341 (40%), Positives = 206/341 (60%), Gaps = 33/341 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR FLR++ + ++ + WNY WWI+ V+ +P+ W+ IL G
Sbjct: 148 LVNAVLRRFLRERAAWLE-RLQADRRALWNYEPWWIDAVERAWPD--AWQRILAAGDAPG 204
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N R+ T +Y L+ ++ IG AI+L + + +IP F +G S+QDA
Sbjct: 205 PLTLRVNARRMTADAYLDTLRAERIDAEKIGLHAIRLASARPVERIPGFADGIVSVQDAG 264
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQL+A L R GM VLDAC+APGGKT H+LE+A ++++++++ +R I ENL RL+L
Sbjct: 265 AQLSAEWLGARDGMRVLDACAAPGGKTGHILELAHAEVVALESDPARAPRIGENLARLSL 324
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A + + D + + +++ + FDR+LAD+PC+ SG+VRR+PDI W
Sbjct: 325 TADVRVGDAA----------------DPAQWHDGRPFDRVLADVPCSASGIVRRHPDIRW 368
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR DI L +IL+ LW ++KPGG+LL+VTCS++ EE E QA F +D++RL
Sbjct: 369 LRRAADIPALVAEQRRILSALWPLVKPGGELLYVTCSIFPEEGELQARWFGDACQDAVRL 428
Query: 301 NSPGQLLP--------------TVNKKQDYDGFFYSLFQKR 327
++PGQLLP + D+DGFFY+ FQKR
Sbjct: 429 DAPGQLLPQGATGGAPAVGGSGESGRHVDHDGFFYARFQKR 469
>gi|167900770|ref|ZP_02487975.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei NCTC 13177]
Length = 469
Score = 278 bits (711), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 137/341 (40%), Positives = 206/341 (60%), Gaps = 33/341 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR FLR++ + ++ + WNY WWI+ V+ +P+ W+ IL G
Sbjct: 148 LVNAVLRRFLRERAAWLE-RLQADRRALWNYEPWWIDAVERAWPD--AWQRILAAGDAPG 204
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N R+ T +Y L+ ++ IG AI+L + + +IP F +G S+QDA
Sbjct: 205 PLTLRVNARRMTADAYLDTLRAERIDAEKIGLHAIRLASARPVERIPGFADGIVSVQDAG 264
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQL+A L R GM VLDAC+APGGKT H+LE+A ++++++++ +R I ENL RL+L
Sbjct: 265 AQLSAEWLGARDGMRVLDACAAPGGKTGHILELAHAEVVALESDPARAPRIDENLARLSL 324
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A + + D + + +++ + FDR+LAD+PC+ SG+VRR+PDI W
Sbjct: 325 TADVRVGDAA----------------DPAQWHDGRPFDRVLADVPCSASGIVRRHPDIRW 368
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR DI L +IL+ LW ++KPGG+LL+VTCS++ EE E QA F +D++RL
Sbjct: 369 LRRAADIPALVAEQRRILSALWPLVKPGGELLYVTCSIFPEEGELQARWFGDACQDAVRL 428
Query: 301 NSPGQLLP--------------TVNKKQDYDGFFYSLFQKR 327
++PGQLLP + D+DGFFY+ FQKR
Sbjct: 429 DAPGQLLPQGATGGAPAVGGSGESGRHVDHDGFFYARFQKR 469
>gi|332285815|ref|YP_004417726.1| hypothetical protein PT7_2562 [Pusillimonas sp. T7-7]
gi|330429768|gb|AEC21102.1| hypothetical protein PT7_2562 [Pusillimonas sp. T7-7]
Length = 451
Score = 278 bits (710), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 134/330 (40%), Positives = 206/330 (62%), Gaps = 23/330 (6%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++N +LR F+R++ I N E+ +N+P WWI+Q++ +YP+ QW+ +L +
Sbjct: 139 LLNGVLRGFIRERSAILAQAGENP-EAVFNHPAWWIDQLRRSYPD--QWQALLHSANVPG 195
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
P+TLR+NQR++++ L ++G+ + AI L TP + ++P F G+ S+QD A
Sbjct: 196 PMTLRVNQRRSSVPQILASLAEAGIPAVHVRDEAIALLTPRPVHEVPGFEQGWWSVQDLA 255
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQ A LL ++ GM VLDAC+APGGKT HLLE AD++L+++D + RL +++NL RL L
Sbjct: 256 AQQAGLLLPVQPGMRVLDACAAPGGKTAHLLERADVELLALDADQGRLERVTQNLDRLGL 315
Query: 181 KA---TLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
+ +L +D + + ++ + FD +LAD+PCT SGVVRR+PD
Sbjct: 316 NSKSVSLCCADAADVP----------------SWWDGRPFDAVLADVPCTASGVVRRHPD 359
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR DI K + I++ LW +KPGG +L+ TCS++ +E E+QA F+ H D+
Sbjct: 360 IRWLRRSADIAKTAALQRSIVDALWTTVKPGGHMLYATCSIFPQEGEQQAKKFATRHSDA 419
Query: 298 IRLNSPGQLLPTVNKKQ-DYDGFFYSLFQK 326
IRL +PGQLLP + + +DGFFY+LF K
Sbjct: 420 IRLAAPGQLLPLADDQAVSHDGFFYALFAK 449
>gi|167834982|ref|ZP_02461865.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
thailandensis MSMB43]
gi|424901715|ref|ZP_18325231.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
thailandensis MSMB43]
gi|390932090|gb|EIP89490.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
thailandensis MSMB43]
Length = 470
Score = 277 bits (709), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 135/341 (39%), Positives = 206/341 (60%), Gaps = 33/341 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR FLR++ + ++ + + WNY WWI+ V+ +P+ W IL G
Sbjct: 149 LVNAVLRRFLRERAAWLE-RLQSDRRARWNYEPWWIDAVERAWPD--AWPRILASGDTPG 205
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N R+ T +Y +L+ ++ IG AI+L + + + +IP F +G S+QDA
Sbjct: 206 PLTLRVNARRMTAQAYLDVLRAERIDAEKIGRHAIRLASALPVERIPGFADGLVSVQDAG 265
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAA L R GM VLDAC+APGGKT H+LE+A ++++++++ +R I ENL RL+L
Sbjct: 266 AQLAAEWLGARDGMRVLDACAAPGGKTGHILELAHAEVVALESDPARAPRIGENLARLSL 325
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A + + D + +++ + FDR+LAD+PC+ SG++RR+PDI W
Sbjct: 326 AADVRVGD----------------AGDPAQWHDGRPFDRVLADVPCSASGIMRRHPDIRW 369
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR DI L +IL+ LW ++KPGG+LL+ TCS++ +E E QA F +D++RL
Sbjct: 370 LRRAADIPALVAEQRRILSALWPLVKPGGELLYATCSIFPDEGELQARWFGDACQDAVRL 429
Query: 301 NSPGQLLP--------------TVNKKQDYDGFFYSLFQKR 327
++PGQLLP + D+DGFFY+ FQKR
Sbjct: 430 DAPGQLLPQGATGGAPAVGGSGEPGRHVDHDGFFYARFQKR 470
>gi|313199965|ref|YP_004038623.1| sun protein [Methylovorus sp. MP688]
gi|312439281|gb|ADQ83387.1| sun protein [Methylovorus sp. MP688]
Length = 427
Score = 277 bits (709), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 137/335 (40%), Positives = 206/335 (61%), Gaps = 31/335 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+ NA+LR FLR++ + K+ + ++YP WW+N+++ YP W+ +L G++ P
Sbjct: 114 LTNAVLRNFLRQQDALVKNIDPTDDVARYSYPQWWVNKLRHQYPQ--DWEAMLLAGNQHP 171
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
P+TLR+N+R ++ +Y++ L +G+ +++G A+ L PI + +IP F G S+QDA
Sbjct: 172 PMTLRVNRRHLSVEAYSQQLADAGIAASLLGGSAVTLTQPIPVERIPGFLEGDVSVQDAG 231
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQ AAPLLD+ GM VLDAC APGGKT H+LE+AD+ L+++D++ RL ENL+RL L
Sbjct: 232 AQWAAPLLDLAPGMRVLDACCAPGGKTGHILELADVDLVAMDSDAGRLRRTEENLQRLKL 291
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
KA L+ D + + ++ ++ FDRILAD+PCT SG+VRR+ DI W
Sbjct: 292 KAQLVTGDAADAS----------------GWWDSRPFDRILADVPCTASGIVRRHVDIKW 335
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR+ D+ + IL LW+ L GGKLL+ TCS++ EE+++Q F + H D+ +L
Sbjct: 336 LRREADVASFVRQQALILPQLWQCLAKGGKLLYATCSVFHEENQQQIDRFLQQHADAKQL 395
Query: 301 -----NSP----GQLLPTVNKKQDYDGFFYSLFQK 326
SP GQL P +DGFFY+L QK
Sbjct: 396 PLSQDASPHARHGQLYPCAA----HDGFFYALLQK 426
>gi|33591772|ref|NP_879416.1| hypothetical protein BP0569 [Bordetella pertussis Tohama I]
gi|384203075|ref|YP_005588814.1| hypothetical protein BPTD_0578 [Bordetella pertussis CS]
gi|408417231|ref|YP_006627938.1| hypothetical protein BN118_3498 [Bordetella pertussis 18323]
gi|33571415|emb|CAE44897.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
gi|332381189|gb|AEE66036.1| hypothetical protein BPTD_0578 [Bordetella pertussis CS]
gi|401779401|emb|CCJ64923.1| conserved hypothetical protein [Bordetella pertussis 18323]
Length = 444
Score = 276 bits (707), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 132/330 (40%), Positives = 201/330 (60%), Gaps = 19/330 (5%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA LR FLR++ E + + + WN+P WW+ ++ YP+ QW+ IL +
Sbjct: 130 LLNASLRRFLRER-EALQDSVAERPAARWNHPRWWVELLERAYPD--QWRGILAGANVPA 186
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N+R+ T+ + L ++G+ +G + L P + ++P + G+ S+QDA
Sbjct: 187 PLTLRVNRRRATVEQARQALAQAGVAAAPVGDAGLVLAEPRPVPQLPGYGAGWWSVQDAG 246
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAAPLL GM VLDAC+APGGKT HLLE+ADI L+++D ++ RL + +NL+RL L
Sbjct: 247 AQLAAPLLAPADGMRVLDACAAPGGKTAHLLELADIDLLALDADVQRLERVDQNLERLGL 306
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
+ + + + + D + FD +LAD+PCT SG+VRR+PDI W
Sbjct: 307 RTPRVRLAAADASDLDAWWD-------------GRPFDAVLADVPCTASGIVRRHPDIRW 353
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR D+ + + +I + LW+ + PGG+LL+VTCS++ E EQA F++ H D+ L
Sbjct: 354 LRRAKDVPRTAALQARIADALWRTVAPGGRLLYVTCSVFPAEGREQAEAFARRHADAAPL 413
Query: 301 NSPGQLLPT---VNKKQDYDGFFYSLFQKR 327
++PGQLLP + +DGFFY+LF KR
Sbjct: 414 DAPGQLLPVAIDATPQAQHDGFFYALFAKR 443
>gi|427817546|ref|ZP_18984609.1| conserved hypothetical protein [Bordetella bronchiseptica D445]
gi|410568546|emb|CCN16591.1| conserved hypothetical protein [Bordetella bronchiseptica D445]
Length = 444
Score = 276 bits (706), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 132/330 (40%), Positives = 200/330 (60%), Gaps = 19/330 (5%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA LR FLR++ E + + + WN+P WW+ ++ YP+ QW+ IL +
Sbjct: 130 LLNASLRRFLRER-EALQDSVAERPAARWNHPRWWVELLERAYPD--QWRGILAGANVPA 186
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N+R+ T+ + L ++G+ +G + L P + ++P + G+ S+QDA
Sbjct: 187 PLTLRVNRRRATVEQARQALAQAGVAAAPVGDAGLVLAEPRPVPQLPGYDAGWWSVQDAG 246
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAAPLL GM VLDAC+APGGKT HLLE+ADI L+++D + RL + +NL+RL L
Sbjct: 247 AQLAAPLLAPADGMRVLDACAAPGGKTAHLLELADIDLLALDADAQRLERVDQNLERLGL 306
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
+ + + + + D + FD +LAD+PCT SG+VRR+PDI W
Sbjct: 307 RTPRVRLAAADASDLDAWWD-------------GRPFDAVLADVPCTASGIVRRHPDIRW 353
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR D+ + + +I + LW+ + PGG+LL+VTCS++ E EQA F++ H D+ L
Sbjct: 354 LRRAEDVPRTAALQARIADALWRTVAPGGRLLYVTCSVFPAEGREQAEAFARRHADAAPL 413
Query: 301 NSPGQLLPT---VNKKQDYDGFFYSLFQKR 327
++PGQLLP + +DGFFY+LF KR
Sbjct: 414 DAPGQLLPVAIDATPQAQHDGFFYALFAKR 443
>gi|410418059|ref|YP_006898508.1| hypothetical protein BN115_0247 [Bordetella bronchiseptica MO149]
gi|408445354|emb|CCJ57003.1| conserved hypothetical protein [Bordetella bronchiseptica MO149]
Length = 444
Score = 276 bits (706), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 132/330 (40%), Positives = 200/330 (60%), Gaps = 19/330 (5%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA LR FLR++ E + + + WN+P WW+ ++ YP+ QW+ IL +
Sbjct: 130 LLNASLRRFLRER-EALQDSVAERPAARWNHPRWWVELLERAYPD--QWRGILAGANVPA 186
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N+R+ T+ + L ++G+ +G + L P + ++P + G+ S+QDA
Sbjct: 187 PLTLRVNRRRATVEQARQALAQAGVAAAPVGDAGLVLAEPRPVPQLPGYDAGWWSVQDAG 246
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAAPLL GM VLDAC+APGGKT HLLE+ADI L+++D + RL + +NL+RL L
Sbjct: 247 AQLAAPLLAPADGMRVLDACAAPGGKTAHLLELADIDLLALDADAQRLERVDQNLERLGL 306
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
+ + + + + D + FD +LAD+PCT SG+VRR+PDI W
Sbjct: 307 RTPRVRLAAADASDLDAWWD-------------GRPFDAVLADVPCTASGIVRRHPDIRW 353
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR D+ + + +I + LW+ + PGG+LL+VTCS++ E EQA F++ H D+ L
Sbjct: 354 LRRAEDVPRTAALQARIADALWRTVAPGGRLLYVTCSVFPAEGREQAEAFARRHADAAPL 413
Query: 301 NSPGQLLPT---VNKKQDYDGFFYSLFQKR 327
++PGQLLP + +DGFFY+LF KR
Sbjct: 414 DAPGQLLPVAIDATPQAQHDGFFYALFAKR 443
>gi|427823291|ref|ZP_18990353.1| conserved hypothetical protein [Bordetella bronchiseptica Bbr77]
gi|410588556|emb|CCN03615.1| conserved hypothetical protein [Bordetella bronchiseptica Bbr77]
Length = 459
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 132/330 (40%), Positives = 200/330 (60%), Gaps = 19/330 (5%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA LR FLR++ E + + + WN+P WW+ ++ YP+ QW+ IL +
Sbjct: 145 LLNASLRRFLRER-EALQDSVAERPAARWNHPRWWVELLERAYPD--QWRGILAGANVPA 201
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N+R+ T+ + L ++G+ +G + L P + ++P + G+ S+QDA
Sbjct: 202 PLTLRVNRRRATVEQARQALAQAGVAAAPVGDAGLVLAEPRPVPQLPGYDAGWWSVQDAG 261
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAAPLL GM VLDAC+APGGKT HLLE+ADI L+++D + RL + +NL+RL L
Sbjct: 262 AQLAAPLLAPADGMRVLDACAAPGGKTAHLLELADIDLLALDADAQRLERVDQNLERLGL 321
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
+ + + + + D + FD +LAD+PCT SG+VRR+PDI W
Sbjct: 322 RTPRVRLAAADASDLDAWWD-------------GRPFDAVLADVPCTASGIVRRHPDIRW 368
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR D+ + + +I + LW+ + PGG+LL+VTCS++ E EQA F++ H D+ L
Sbjct: 369 LRRAEDVPRTAALQARIADALWRTVAPGGRLLYVTCSVFPAEGREQAEAFARRHADAAPL 428
Query: 301 NSPGQLLPT---VNKKQDYDGFFYSLFQKR 327
++PGQLLP + +DGFFY+LF KR
Sbjct: 429 DAPGQLLPVAIDATPQAQHDGFFYALFAKR 458
>gi|412340447|ref|YP_006969202.1| hypothetical protein BN112_3155 [Bordetella bronchiseptica 253]
gi|408770281|emb|CCJ55072.1| conserved hypothetical protein [Bordetella bronchiseptica 253]
Length = 444
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 132/330 (40%), Positives = 199/330 (60%), Gaps = 19/330 (5%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA LR FLR++ E + + + WN+P WW+ ++ YP QW+ IL +
Sbjct: 130 LLNASLRRFLRER-EALQDSVAERPAARWNHPSWWVELLERAYPE--QWRGILAGANVPA 186
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N+R+ T+ + L ++G+ +G + L P + ++P + G+ S+QDA
Sbjct: 187 PLTLRVNRRRATVEQVRQALAQAGVAAAPVGDAGLVLAEPRPVPQLPGYDAGWWSVQDAG 246
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAAPLL GM VLDAC+APGGKT HLLE+ADI L+++D + RL + +NL+RL L
Sbjct: 247 AQLAAPLLAPADGMRVLDACAAPGGKTAHLLELADIDLLALDADAQRLERVDQNLERLGL 306
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
+ + + + + D + FD +LAD+PCT SG+VRR+PDI W
Sbjct: 307 RTPRVRLAAADASDLDAWWD-------------GRPFDAVLADVPCTASGIVRRHPDIRW 353
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR D+ + + +I + LW+ + PGG+LL+VTCS++ E EQA F++ H D+ L
Sbjct: 354 LRRAEDVPRTAALQARIADALWRTVAPGGRLLYVTCSVFPAEGREQAEAFARRHADAAPL 413
Query: 301 NSPGQLLPT---VNKKQDYDGFFYSLFQKR 327
++PGQLLP + +DGFFY+LF KR
Sbjct: 414 DAPGQLLPVAIDATPQAQHDGFFYALFAKR 443
>gi|33599251|ref|NP_886811.1| hypothetical protein BB0262 [Bordetella bronchiseptica RB50]
gi|33575297|emb|CAE30760.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
Length = 444
Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 132/330 (40%), Positives = 199/330 (60%), Gaps = 19/330 (5%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA LR FLR++ E + + + WN+P WW+ ++ YP QW+ IL +
Sbjct: 130 LLNASLRRFLRER-EALQDSVAERPAARWNHPSWWVELLERAYPE--QWRGILAGANVPA 186
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N+R+ T+ + L ++G+ +G + L P + ++P + G+ S+QDA
Sbjct: 187 PLTLRVNRRRATVEQARQALAQAGVAAAPVGDAGLVLAEPRPVPQLPGYDAGWWSVQDAG 246
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAAPLL GM VLDAC+APGGKT HLLE+ADI L+++D + RL + +NL+RL L
Sbjct: 247 AQLAAPLLAPADGMRVLDACAAPGGKTAHLLELADIDLLALDADAQRLERVDQNLERLGL 306
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
+ + + + + D + FD +LAD+PCT SG+VRR+PDI W
Sbjct: 307 RTPRVRLAAADASDLDAWWD-------------GRPFDAVLADVPCTASGIVRRHPDIRW 353
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR D+ + + +I + LW+ + PGG+LL+VTCS++ E EQA F++ H D+ L
Sbjct: 354 LRRAEDVPRTAALQARIADALWRTVAPGGRLLYVTCSVFPAEGREQAEAFARRHADAAPL 413
Query: 301 NSPGQLLPT---VNKKQDYDGFFYSLFQKR 327
++PGQLLP + +DGFFY+LF KR
Sbjct: 414 DAPGQLLPVAIDATPQAQHDGFFYALFAKR 443
>gi|427812512|ref|ZP_18979576.1| conserved hypothetical protein [Bordetella bronchiseptica 1289]
gi|410563512|emb|CCN21046.1| conserved hypothetical protein [Bordetella bronchiseptica 1289]
Length = 444
Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 132/330 (40%), Positives = 199/330 (60%), Gaps = 19/330 (5%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA LR FLR++ E + + + WN+P WW+ ++ YP QW+ IL +
Sbjct: 130 LLNASLRRFLRER-EALQDSVAERPAARWNHPSWWVELLERAYPE--QWRGILAGANVPA 186
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N+R+ T+ + L ++G+ +G + L P + ++P + G+ S+QDA
Sbjct: 187 PLTLRVNRRRATVEQVRQALAQAGVAAAPVGDAGLVLAEPRPVPQLPGYDAGWWSVQDAG 246
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAAPLL GM VLDAC+APGGKT HLLE+ADI L+++D + RL + +NL+RL L
Sbjct: 247 AQLAAPLLAPADGMRVLDACAAPGGKTAHLLELADIDLLALDADAQRLERVDQNLERLGL 306
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
+ + + + + D + FD +LAD+PCT SG+VRR+PDI W
Sbjct: 307 RTPRVRLAAADASDLDAWWD-------------GRPFDAVLADVPCTASGIVRRHPDIRW 353
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR D+ + + +I + LW+ + PGG+LL+VTCS++ E EQA F++ H D+ L
Sbjct: 354 LRRAEDVPRTAALQARIADALWRTVAPGGRLLYVTCSVFPAEGREQAEAFARRHADAAPL 413
Query: 301 NSPGQLLPT---VNKKQDYDGFFYSLFQKR 327
++PGQLLP + +DGFFY+LF KR
Sbjct: 414 DAPGQLLPVAIDATPQAQHDGFFYALFAKR 443
>gi|410471055|ref|YP_006894336.1| hypothetical protein BN117_0257 [Bordetella parapertussis Bpp5]
gi|408441165|emb|CCJ47590.1| conserved hypothetical protein [Bordetella parapertussis Bpp5]
Length = 444
Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 132/330 (40%), Positives = 199/330 (60%), Gaps = 19/330 (5%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA LR FLR++ E + + + WN+P WW+ ++ YP QW+ IL +
Sbjct: 130 LLNASLRRFLRER-EALQDSVAERPAARWNHPSWWVELLERAYPE--QWRGILAGANVPA 186
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N+R+ T+ + L ++G+ +G + L P + ++P + G+ S+QDA
Sbjct: 187 PLTLRVNRRRATVEQVRQALAQAGVAAAPVGDAGLVLAEPRPVPQLPGYDAGWWSVQDAG 246
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAAPLL GM VLDAC+APGGKT HLLE+ADI L+++D + RL + +NL+RL L
Sbjct: 247 AQLAAPLLAPADGMRVLDACAAPGGKTAHLLELADIDLLALDADAQRLERVDQNLERLGL 306
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
+ + + + + D + FD +LAD+PCT SG+VRR+PDI W
Sbjct: 307 RTPRVRLAAADASDLDAWWD-------------GRPFDAVLADVPCTASGIVRRHPDIRW 353
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR D+ + + +I + LW+ + PGG+LL+VTCS++ E EQA F++ H D+ L
Sbjct: 354 LRRAEDVPRTAALQARIADALWRTVAPGGRLLYVTCSVFPAEGREQAEAFARRHADAAPL 413
Query: 301 NSPGQLLPT---VNKKQDYDGFFYSLFQKR 327
++PGQLLP + +DGFFY+LF KR
Sbjct: 414 DAPGQLLPVAIDATPQAQHDGFFYALFAKR 443
>gi|253997900|ref|YP_003049963.1| sun protein [Methylovorus glucosetrophus SIP3-4]
gi|253984579|gb|ACT49436.1| sun protein [Methylovorus glucosetrophus SIP3-4]
Length = 427
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 137/335 (40%), Positives = 204/335 (60%), Gaps = 31/335 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+ NA+LR FLR++ + K+ + ++YP WW+N+++ YP +WK +L G++ P
Sbjct: 114 LTNAVLRNFLRQQDVLVKNIDPTDDVARYSYPQWWVNKLRHQYPQ--EWKAMLLAGNQHP 171
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
P+TLR+N+R ++ +Y++ L +G+ + +G A+ L PI + +IP F G S+QDA
Sbjct: 172 PMTLRVNRRHLSVEAYSQQLADAGIAASELGGSAVTLTQPIPVERIPGFLEGDVSVQDAG 231
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQ AAPLLD+ GM VLDAC APGGKT H+LE+AD+ L+++D++ RL ENL+RL L
Sbjct: 232 AQWAAPLLDLAPGMRVLDACCAPGGKTGHILELADVDLVAMDSDAGRLRRTEENLQRLKL 291
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
KA L+ D + + ++ + FDRILAD+PCT SG+VRR+ DI W
Sbjct: 292 KAQLVTGDAADAS----------------GWWDGRPFDRILADVPCTASGIVRRHVDIKW 335
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR+ D+ + IL LW+ L GGKLL+ TCS++ EE+++Q F + H D+ +L
Sbjct: 336 LRREADVASFVRQQALILPQLWQCLAKGGKLLYATCSVFHEENQQQIDRFLQQHADAKQL 395
Query: 301 -----NSP----GQLLPTVNKKQDYDGFFYSLFQK 326
SP GQ P +DGFFY+L QK
Sbjct: 396 PLSQDASPHARHGQFYPCAA----HDGFFYALLQK 426
>gi|33594975|ref|NP_882618.1| hypothetical protein BPP0259 [Bordetella parapertussis 12822]
gi|33565051|emb|CAE40000.1| conserved hypothetical protein [Bordetella parapertussis]
Length = 474
Score = 273 bits (699), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 131/330 (39%), Positives = 198/330 (60%), Gaps = 19/330 (5%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA LR FLR++ E + + + WN+P WW+ ++ YP QW+ IL +
Sbjct: 160 LLNASLRRFLRER-EALQDSVAERPAARWNHPSWWVELLERAYPE--QWRGILAGANVPA 216
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N+R+ T+ + L ++G+ +G + L P + ++P + G+ S+QDA
Sbjct: 217 PLTLRVNRRRATVEQVRQALAQAGVAAAPVGDAGLVLAEPRPVPQLPGYDAGWWSVQDAG 276
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAAPLL GM VLDAC+APGGKT HLLE+ADI L+++D + RL + +NL+RL L
Sbjct: 277 AQLAAPLLAPADGMRVLDACAAPGGKTAHLLELADIDLLALDADAQRLERVDQNLERLGL 336
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
+ + + + + D + FD +LAD+PCT SG+VRR+PDI W
Sbjct: 337 RTPRVRLAAADASDLDAWWD-------------GRPFDAVLADVPCTASGIVRRHPDIRW 383
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR D+ + + +I + LW+ + PGG+LL+VTCS++ E EQ F++ H D+ L
Sbjct: 384 LRRAEDVPRTAALQARIADALWRTVAPGGRLLYVTCSVFPAEGREQTEAFARRHADAAPL 443
Query: 301 NSPGQLLPT---VNKKQDYDGFFYSLFQKR 327
++PGQLLP + +DGFFY+LF KR
Sbjct: 444 DAPGQLLPVAIDATPQAQHDGFFYALFAKR 473
>gi|253997546|ref|YP_003049610.1| sun protein [Methylotenera mobilis JLW8]
gi|253984225|gb|ACT49083.1| sun protein [Methylotenera mobilis JLW8]
Length = 432
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 137/338 (40%), Positives = 204/338 (60%), Gaps = 36/338 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR FLR++ ++ N +Y +YP WW+N++K YP+ W+ IL VG++ P
Sbjct: 118 LVNAVLRNFLRQQAQLTLKLTANEVATY-SYPQWWVNKLKTQYPD--AWQGILSVGNQHP 174
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
P++LR+N +K + Y +LL S +E T +G ++ L P+++ KIP F +G S+QD
Sbjct: 175 PMSLRVNTQKIAIADYLQLLALSEIEATQVGAQSVILTKPVAVEKIPGFSDGVVSVQDYG 234
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAA L+ GM VLDAC APGGKT H+LE+A +++ ++D++ RL + NL RL+L
Sbjct: 235 AQLAAHLIGAEDGMRVLDACCAPGGKTSHILELAKVEMTALDSDALRLERVQSNLARLHL 294
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A +I D + +Y K FDRILAD+PCT SG+VRR+ DI W
Sbjct: 295 NAQVIAGDAGSAD-----------------WYDGKPFDRILADVPCTASGIVRRHVDIKW 337
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR+ D+ KIL +LW+ML GGKLL+VTCS++ EE++ Q F + + D+ +L
Sbjct: 338 LRRETDVASFVAQQAKILPSLWQMLAKGGKLLYVTCSVFKEENQAQIDQFLQKNADAQQL 397
Query: 301 ------------NSPGQLLPTVNKKQDYDGFFYSLFQK 326
+ GQL+P+ +DGFFY+L QK
Sbjct: 398 PIEQALAQYNVAHIQGQLIPS----NSHDGFFYALLQK 431
>gi|291612482|ref|YP_003522639.1| sun protein [Sideroxydans lithotrophicus ES-1]
gi|291582594|gb|ADE10252.1| sun protein [Sideroxydans lithotrophicus ES-1]
Length = 424
Score = 272 bits (696), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 135/333 (40%), Positives = 198/333 (59%), Gaps = 29/333 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR +LR++ + + ES++ Y WWIN +K Y Q I+ G++ P
Sbjct: 114 LVNAVLRNYLRRQS-VLREAANQKEESHYAYRQWWINALKAQYGE--QAAEIMQAGNRHP 170
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
P+TLR+N R TT Y +L + I+ P A+ L P+ + K+PKF G+ S+QDA
Sbjct: 171 PMTLRVNARHTTAPGYQTVLAAQDIAAQIVEPDALILECPVPVEKLPKFNEGWVSVQDAG 230
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQ AA LD+ GM VLDAC+APGGKT HLLE+ADI+L++VD + RL + ENL+RL L
Sbjct: 231 AQYAAHFLDVHDGMRVLDACAAPGGKTAHLLELADIELLAVDKDELRLGRVRENLQRLKL 290
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A ++ D + ++ K F+RILAD+PC+ SGVVRR+PDI W
Sbjct: 291 DAQVVCGDAASPE----------------DWWDGKAFERILADVPCSASGVVRRHPDIKW 334
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS--I 298
LRR+ DI + ++L +LW +L GKLL+ TCS++ E+++ F H D+ I
Sbjct: 335 LRRQEDIANFAVQQAQVLESLWSLLASDGKLLYATCSVFARENQQVVAEFLARHDDASKI 394
Query: 299 RLNSP----GQLLPTVNKKQDYDGFFYSLFQKR 327
L++ GQLLP +++DGFFY+L K+
Sbjct: 395 ELSATGMIDGQLLP----DREHDGFFYALLHKQ 423
>gi|187476742|ref|YP_784766.1| ribosomal RNA small subunit methyltransferase [Bordetella avium
197N]
gi|115421328|emb|CAJ47833.1| ribosomal RNA small subunit methyltransferase [Bordetella avium
197N]
Length = 442
Score = 272 bits (696), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 136/332 (40%), Positives = 207/332 (62%), Gaps = 23/332 (6%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN LR FLR++ E F++++ N WN+P WWI ++ YP QW+++L +
Sbjct: 130 LINGSLRRFLRER-EQFEAQLANDPVVRWNHPQWWIKTLRQAYPQ--QWQSLLAAANVPA 186
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N+R+ + +GL G + + P ++++P F G+ S+QDA
Sbjct: 187 PLTLRVNRRRASREQVLDAFSHAGLPAREAGEWGVVVLEPRPVAQLPGFAEGWWSVQDAG 246
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAAPLL + GM VLDAC+APGGKT H+LEIA++ L+++D++ SRL + +NL RL L
Sbjct: 247 AQLAAPLLPLADGMRVLDACAAPGGKTAHMLEIANLDLVALDSDASRLERVGQNLARLGL 306
Query: 181 K-ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIP 239
A+L+ +D +K++ ++ K FD +LAD+PCT SG+VRR+PDI
Sbjct: 307 SGASLVAADAAKLD----------------SWWDGKPFDAVLADVPCTASGIVRRHPDIR 350
Query: 240 WLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIR 299
WLRR D+ + + +I + LW+++ PGG LL+VTCS++ E + QA F+ H D+I
Sbjct: 351 WLRRAPDVARTAALQARIADALWRVVAPGGHLLYVTCSIFPAEGQAQAQAFAARHADAIV 410
Query: 300 LNSPGQLLPT---VNKKQDYDGFFYSLFQKRK 328
L +PGQLLP ++ +DGFFY+LF KR+
Sbjct: 411 LPAPGQLLPVALDATPERQHDGFFYALFAKRR 442
>gi|339481947|ref|YP_004693733.1| sun protein [Nitrosomonas sp. Is79A3]
gi|338804092|gb|AEJ00334.1| sun protein [Nitrosomonas sp. Is79A3]
Length = 425
Score = 271 bits (692), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 139/333 (41%), Positives = 204/333 (61%), Gaps = 30/333 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR F+R++ + + N Y ++P WWI++++ YP FQ IL+ +K+P
Sbjct: 115 LVNAVLRSFIRQRDSLLRKAAENEVGRY-SHPQWWIDKLRWQYPQNFQ--AILEADNKRP 171
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
P+TLR+NQRK ++ +Y KLL + + T ++ A++L P+ + +P F G ++QDA
Sbjct: 172 PMTLRVNQRKISVETYRKLLAEKTMHTELLDSGALQLSQPVMVESLPGFAEGLVTVQDAG 231
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQ AA LD+ GM VLDAC+APGGK+ HLLE+ADI L +DN+ +RL + +NL RLN+
Sbjct: 232 AQFAATFLDVHDGMRVLDACAAPGGKSTHLLELADISLTVLDNDSARLAQVQQNLARLNV 291
Query: 181 KAT-LILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIP 239
A L+ D S + ++ + +DRILAD+PC+ SGVV R+PDI
Sbjct: 292 TAERLLCGDASHPD----------------EWWDGQSYDRILADVPCSASGVVCRHPDIK 335
Query: 240 WLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIR 299
WLRR++D+ K + ILN LWK+L GKLL+VTCS++ EE+ Q F K+H D+
Sbjct: 336 WLRRESDLVKFAASQQAILNALWKILSRDGKLLYVTCSIFAEENTMQIEKFLKHHPDACP 395
Query: 300 L------NSPGQLLPTVNKKQDYDGFFYSLFQK 326
L GQLLP +DGFFY+L QK
Sbjct: 396 LPLSGAAMVDGQLLPDTQ----HDGFFYTLLQK 424
>gi|91774540|ref|YP_544296.1| sun protein [Methylobacillus flagellatus KT]
gi|91708527|gb|ABE48455.1| sun protein [Methylobacillus flagellatus KT]
Length = 425
Score = 268 bits (685), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 128/334 (38%), Positives = 207/334 (61%), Gaps = 31/334 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR FLR++ + + ++ + + ++YP WWIN+++ YP W+++L+ G++ P
Sbjct: 114 LVNAVLRNFLRQRA-MLERRIADDEVAQYSYPQWWINKLRQQYP--VHWQSMLEAGNQHP 170
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
P+TLR+N+R SY + L+ +GL + A+ L + + ++++P F G S+QD
Sbjct: 171 PMTLRVNRRHDDAASYLERLRAAGLNARTLDEQAVMLESAVPVTRLPGFEAGHASVQDWG 230
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQ AA LD+ GM VLDAC APGGKT H+LE+AD+++ ++DN+ RL + +NL+RL L
Sbjct: 231 AQFAAMELDVADGMRVLDACCAPGGKTGHVLELADVRMTAMDNDAHRLLRVQQNLERLGL 290
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A+L+ D + N ++ +DRILAD+PC+ SG+VRR+ DI W
Sbjct: 291 SASLVQGDAA----------------NPDAWWDGMPYDRILADVPCSASGIVRRHVDIKW 334
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR+ DI ++ IL LW++L GGKLL+VTCS++ EE+++Q F + D+ ++
Sbjct: 335 LRREQDIAAFAEQQRLILQGLWRLLAKGGKLLYVTCSVFHEENQQQIARFLQTQPDARQM 394
Query: 301 --------NSPGQLLPTVNKKQDYDGFFYSLFQK 326
++ GQLLP ++DGFFY+L QK
Sbjct: 395 PCKHGTLQSNQGQLLPGT----EHDGFFYALLQK 424
>gi|149925342|ref|ZP_01913606.1| hypothetical protein LMED105_03942 [Limnobacter sp. MED105]
gi|149825459|gb|EDM84667.1| hypothetical protein LMED105_03942 [Limnobacter sp. MED105]
Length = 455
Score = 268 bits (684), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 138/332 (41%), Positives = 202/332 (60%), Gaps = 19/332 (5%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+ NA LR FLR +++K + N P WWI ++K ++P W+ +L P
Sbjct: 133 LANACLRNFLRDS-NTWRNKAMEDPLAQHNLPAWWIEKLKASHPQ--HWETMLAQAQSHP 189
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PL +R+N R ++ +Y + L +G++ ++IG A+ L P+ +S +P F G S+QD+A
Sbjct: 190 PLVVRVNTRSSSASAYAEQLNAAGMQASVIGEQAVLLAKPVPVSALPGFDLGQVSVQDSA 249
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLA+ LL+ ++G +LDAC+APGGKT HLLE+ADI+L+++D++ RL + +N++R+
Sbjct: 250 AQLASQLLNPQNGQRILDACAAPGGKTGHLLELADIELVALDSSPQRLGRVEDNIRRI-- 307
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
L+ + LK ++ ++ FD ILAD+PCTGSGVVRR+PDIPW
Sbjct: 308 --APTLNGQWDLRLKVAQAELLDT------WWDGVPFDGILADVPCTGSGVVRRHPDIPW 359
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR +DI KLS+ KILN LW LKPGG LL VTCS++ EE A F NH D++
Sbjct: 360 LRRPDDIAKLSQIQHKILNALWSTLKPGGTLLLVTCSIFPEEGPLLAKAFLDNHSDALAQ 419
Query: 301 NSPGQLLPTVNKKQDY------DGFFYSLFQK 326
N+PG +LP D DGFFY+ F+K
Sbjct: 420 NAPGWVLPVAPANPDQGFDASPDGFFYAKFEK 451
>gi|424777247|ref|ZP_18204213.1| methyltransferase [Alcaligenes sp. HPC1271]
gi|422887577|gb|EKU29978.1| methyltransferase [Alcaligenes sp. HPC1271]
Length = 434
Score = 268 bits (684), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 129/328 (39%), Positives = 201/328 (61%), Gaps = 18/328 (5%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++N +LR F R++ I S++ + E+ WN+P WW+ +++ YP W+ +L ++
Sbjct: 121 LVNGVLRRFTRERKMIL-SQVESRPEARWNHPGWWVKELRRAYPR--DWEALLQAANRPG 177
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+NQR+ ++ +L ++G+ ++ G A+ L + + IP F G+ S+QD +
Sbjct: 178 PLTLRVNQRRCSVERLQAVLTEAGIASSSPGTGAVTLDKAMPVQAIPGFDLGWWSVQDWS 237
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQ A LL ++ GM VLDAC+APGGKT HLLE AD+ L+++D++ RL + NL+RL L
Sbjct: 238 AQQAGLLLPVKDGMRVLDACAAPGGKTAHLLEQADVSLLALDSDGERLERVGHNLRRLGL 297
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
+ K+ LK+ +++ + FD ILAD+PCT SG+VRR+PDI W
Sbjct: 298 AS-------DKVQLKR------GDAARPAQWWDGQPFDAILADVPCTASGIVRRHPDIRW 344
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR++DI ++ IL+ LW L+PGG L+ TCS++ E E+Q F H ++ L
Sbjct: 345 LRRESDIADTARLQSSILDALWSTLRPGGHFLYSTCSIFPAEGEQQVEAFLARHPEAQLL 404
Query: 301 NSPGQLLPTVNKKQ--DYDGFFYSLFQK 326
+SPGQ+LP V + D DGFFY+LF +
Sbjct: 405 DSPGQILPGVAGRSLADGDGFFYALFTR 432
>gi|393759063|ref|ZP_10347882.1| methyltransferase [Alcaligenes faecalis subsp. faecalis NCIB 8687]
gi|393162959|gb|EJC63014.1| methyltransferase [Alcaligenes faecalis subsp. faecalis NCIB 8687]
Length = 449
Score = 264 bits (675), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 128/328 (39%), Positives = 201/328 (61%), Gaps = 18/328 (5%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++N +LR F R++ I S++ + E+ WN+P WW+ +++ YP W+ +L ++
Sbjct: 136 LVNGVLRRFTRERKMIL-SQVESRPEARWNHPGWWVKELRRAYPR--DWEALLQAANRPG 192
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+NQR+ ++ +L ++G+ ++ G A+ L + + IP F G+ S+QD +
Sbjct: 193 PLTLRVNQRRCSVERLQAVLTEAGIASSSPGVGAVTLDKAMPVQAIPGFDLGWWSVQDWS 252
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQ A LL ++ GM VLDAC+APGGKT HLLE AD+ L+++D++ RL + NL+RL L
Sbjct: 253 AQQAGLLLPVKDGMRVLDACAAPGGKTAHLLEQADVSLLALDSDGERLERVGHNLRRLGL 312
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
+ K+ LK+ +++ + FD ILAD+PCT SG+VRR+PDI W
Sbjct: 313 AS-------DKVQLKR------GDAARPAQWWDGQPFDAILADVPCTASGIVRRHPDIRW 359
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR++DI ++ IL+ LW L+ GG LL+ TCS++ E ++Q F H ++ L
Sbjct: 360 LRRESDIADTARLQSSILDALWSTLRAGGHLLYSTCSIFPAEGQQQVEAFLARHPEAQLL 419
Query: 301 NSPGQLLPTVNKKQ--DYDGFFYSLFQK 326
+SPGQ+LP V + D DGFFY+LF +
Sbjct: 420 DSPGQILPGVAGRSLADGDGFFYALFTR 447
>gi|394990077|ref|ZP_10382909.1| hypothetical protein SCD_02503 [Sulfuricella denitrificans skB26]
gi|393790342|dbj|GAB72548.1| hypothetical protein SCD_02503 [Sulfuricella denitrificans skB26]
Length = 423
Score = 264 bits (675), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 134/332 (40%), Positives = 203/332 (61%), Gaps = 29/332 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR FLR++ + + + E +++P WWI +++ YP+ W L++ ++ P
Sbjct: 114 LVNAVLRNFLRQRISLLEQAAAS-EEGRYSHPQWWIEKLRRQYPD--DWATQLEINNQHP 170
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
P+TLR+N R T+ Y LL + G+E +G AI L P+S+ K+P F G S+QDA
Sbjct: 171 PMTLRVNARVTSTEIYLDLLHQQGIEGQQVGENAILLDQPVSVDKLPGFGEGVSSVQDAG 230
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQ AA LLD+ GM VLDAC+APGGK HLLE+A I+L ++D++ RL I + L+RL L
Sbjct: 231 AQFAARLLDVADGMRVLDACAAPGGKAAHLLELARIELTALDSDPERLKKIEQTLQRLKL 290
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
+A + + ++ + ++ K F RILAD+PC+ SGVVRR+PDI W
Sbjct: 291 EAHCLTGNAARPD----------------EWWDGKPFQRILADVPCSASGVVRRHPDIKW 334
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS--I 298
LRR+ DI + +IL+ LW++L GGKLL+ TCS++ EE+++Q F H+D+ +
Sbjct: 335 LRREVDITAFAAQQAEILDALWRVLGSGGKLLYATCSVFAEENQQQIAQFLVRHEDAQCL 394
Query: 299 RLNSP----GQLLPTVNKKQDYDGFFYSLFQK 326
L+ P GQL P + +DGFFY+L K
Sbjct: 395 PLSLPAMKDGQLTPNLQ----HDGFFYALLLK 422
>gi|344173223|emb|CCA88364.1| 16S rRNA m5C967 methyltransferase,S-adenosyl-L-methionine-dependent
[Ralstonia syzygii R24]
Length = 441
Score = 264 bits (675), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 140/340 (41%), Positives = 208/340 (61%), Gaps = 32/340 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
MIN +LR FLR++G++ + + + NYP WWI V+ YP W+ IL G+++P
Sbjct: 120 MINGVLRRFLREQGDLVAAMQADPVAAI-NYPAWWIGAVRDAYPE--AWQAILAAGNRRP 176
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
P+ LR+N R+ + +Y L ++G+E IG A++L + + +P F G S+QDA
Sbjct: 177 PMVLRVNPRRVPVDAYLARLAEAGIEAERIGGQAVRLARAMPVGDLPGFAEGDVSVQDAG 236
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLN 179
AQLAA LLD+ G VLDAC+APGGKT HLLE+AD + +++++++ +R I ENL RL
Sbjct: 237 AQLAAALLDVAPGQRVLDACAAPGGKTGHLLELADGLDVVALESDAARAERIGENLARLG 296
Query: 180 LKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIP 239
AT+ + D +K + ++ + FDRILAD+PC+ +G+VRR+PDI
Sbjct: 297 QTATVCVGDAAKPDA----------------WWDGRPFDRILADVPCSAAGIVRRHPDIR 340
Query: 240 WLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIR 299
WLRR D+ L+ I++ LW LKPGGKL++VTCS++ E E QA F +D+IR
Sbjct: 341 WLRRPADLPALAALQRDIVSALWACLKPGGKLVYVTCSIFPTEGEAQARWFESRLQDAIR 400
Query: 300 LNSPGQLLPTVNKKQ------------DYDGFFYSLFQKR 327
L+ PGQLLP + + D+DGF+Y++FQKR
Sbjct: 401 LDGPGQLLPAMPEAAGGFAPGISSLPLDHDGFYYAVFQKR 440
>gi|325983531|ref|YP_004295933.1| sun protein [Nitrosomonas sp. AL212]
gi|325533050|gb|ADZ27771.1| sun protein [Nitrosomonas sp. AL212]
Length = 425
Score = 264 bits (675), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 136/333 (40%), Positives = 208/333 (62%), Gaps = 30/333 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR F+R++ ++ K Y ++P WW+++++ YP F IL +K+P
Sbjct: 115 VVNAVLRNFIRQQEKLLKQAAEKEIGRY-SHPQWWVDKLRRQYPENF--AAILSANNKRP 171
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
P+TLR+N+RK ++ +Y LL ++G++ ++ P A++L P+S+ +P F G ++QDA
Sbjct: 172 PMTLRVNRRKISVEAYCDLLAENGMQAELLWPGALRLSQPVSVESLPGFAMGLVTVQDAG 231
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAAPLLD+ GM VLDAC+APGGK+ HLLE+A+I L +DN+ RL + +N +RL +
Sbjct: 232 AQLAAPLLDVHDGMRVLDACAAPGGKSTHLLELANISLSVLDNDPQRLIQVQQNFERLRM 291
Query: 181 KAT-LILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIP 239
+ LI D + N ++ + +DRILAD+PC+ SGVV R+PDI
Sbjct: 292 ASERLICGDAA----------------NPDAWWDKQPYDRILADVPCSASGVVCRHPDIK 335
Query: 240 WLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIR 299
WLRR++D+ K + IL+ LWK+L+ GKLL+VTCS++ EE+ Q F K+H D+ +
Sbjct: 336 WLRRESDLTKFAITQQAILDALWKILRKNGKLLYVTCSVFAEENTMQIEKFLKHHSDACQ 395
Query: 300 LNSP------GQLLPTVNKKQDYDGFFYSLFQK 326
L GQLLP +DGFFY+L QK
Sbjct: 396 LPLSVAAMIDGQLLPDTQ----HDGFFYTLLQK 424
>gi|423014475|ref|ZP_17005196.1| ribosomal RNA small subunit methyltransferase B [Achromobacter
xylosoxidans AXX-A]
gi|338782478|gb|EGP46851.1| ribosomal RNA small subunit methyltransferase B [Achromobacter
xylosoxidans AXX-A]
Length = 445
Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 134/330 (40%), Positives = 202/330 (61%), Gaps = 19/330 (5%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA LR FLR++ + + + + E+ WN+P WW+ Q+++ YP QW+ IL +
Sbjct: 131 LLNACLRRFLRERAAL-DAAVADSPEAEWNHPGWWVKQLRVAYPQ--QWQEILRAANVPA 187
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N+R+ + + +GL +G + L TP ++++P F G+ S+QDA
Sbjct: 188 PLTLRVNRRRASREQVLAAFQDAGLAAEPVGQAGLVLATPRPVTQLPGFAEGWWSVQDAG 247
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAA LL + GM VLDAC+APGGKT HLLE+ADI L+++D + RL + +NL RL L
Sbjct: 248 AQLAAELLAPQDGMRVLDACAAPGGKTAHLLELADIDLLALDADADRLVRVGQNLDRLGL 307
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
++ L+ + K FD +LAD+PCT SG+VRR+PDI W
Sbjct: 308 AG-------ERVRLQAADAADLDAW------WDGKPFDAVLADVPCTASGIVRRHPDIRW 354
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR+ND+++ + +IL+ LW+ + PGG+LL+VTCS++ E QA+ F + H ++ RL
Sbjct: 355 LRRENDVRRTATLQARILDALWRTVAPGGRLLYVTCSIFPIEGTRQALEFLQRHPEAQRL 414
Query: 301 NSPGQLLPT---VNKKQDYDGFFYSLFQKR 327
++PGQLLP DGFFY+LF K+
Sbjct: 415 DAPGQLLPVAVDATPAAQRDGFFYALFAKQ 444
>gi|421899594|ref|ZP_16329957.1| rna methyltransferase (sun protein) [Ralstonia solanacearum MolK2]
gi|206590800|emb|CAQ56412.1| rna methyltransferase (sun protein) [Ralstonia solanacearum MolK2]
Length = 418
Score = 261 bits (667), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 140/342 (40%), Positives = 208/342 (60%), Gaps = 34/342 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
M+N +LR FLR++G++ + M + NYP+WWIN V+ YP W+ IL G+++P
Sbjct: 95 MVNGVLRRFLREQGDLVAA-MQADPVAATNYPVWWINAVREAYPEV--WQAILAAGNRRP 151
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
P+ LR+N R+ + +Y L + G+E IG A++L + + +P F G S+QDA
Sbjct: 152 PMVLRVNPRRVPVDAYLARLAEGGIEAERIGAQAVRLARAVPVGDLPGFAEGDVSVQDAG 211
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLN 179
AQLAA LLD+ G VLDAC+APGGKT HLLE+AD + L++++++ +R I ENL RL
Sbjct: 212 AQLAAALLDVAPGQRVLDACAAPGGKTGHLLELADGLDLVALESDGARAERIGENLARLG 271
Query: 180 LKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIP 239
AT+ + D +K + ++ + FDRIL D+PC+ +G+VRR+PDI
Sbjct: 272 QIATVCVGDAAKPDA----------------WWDGRPFDRILVDVPCSAAGIVRRHPDIR 315
Query: 240 WLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIR 299
WLRR D+ L+ I++ LW LKPGGKL++VTCS++ E E Q F +D+IR
Sbjct: 316 WLRRPADLPALAVLQRDIVSALWACLKPGGKLVYVTCSIFPTEGEAQVRWFESRLQDAIR 375
Query: 300 LNSPGQLLPTVNKKQ--------------DYDGFFYSLFQKR 327
L++PGQLLP + + D+DGF+Y++FQKR
Sbjct: 376 LHAPGQLLPAMPEAAPVGGFVPGVSSLPLDHDGFYYAVFQKR 417
>gi|386334939|ref|YP_006031110.1| 16S rRNA m5c967 methyltransferase [Ralstonia solanacearum Po82]
gi|334197389|gb|AEG70574.1| 16S rRNA m5c967 methyltransferase [Ralstonia solanacearum Po82]
Length = 443
Score = 261 bits (666), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 139/342 (40%), Positives = 208/342 (60%), Gaps = 34/342 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
M+N +LR FLR++G++ + M + NYP+WWIN V+ YP W+ IL G+++P
Sbjct: 120 MVNGVLRRFLREQGDLV-AVMQADPVAATNYPVWWINAVREAYPE--AWQAILAAGNRRP 176
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
P+ LR+N R+ + +Y L + G+E IG A++L + + +P F G S+QDA
Sbjct: 177 PMVLRVNPRRVPVDTYLARLAEGGIEGERIGAQAVRLARAVPVGDLPGFAEGDVSVQDAG 236
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLN 179
AQLAA LLD+ G VLDAC+APGGKT HLLE+AD + +++++++ +R I ENL RL
Sbjct: 237 AQLAAALLDVAPGQRVLDACAAPGGKTGHLLELADGLDVVALESDGARAERIGENLARLG 296
Query: 180 LKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIP 239
AT+ + D +K + ++ + FDRIL D+PC+ +G+VRR+PDI
Sbjct: 297 QTATVCVGDAAKPDA----------------WWDGRPFDRILVDVPCSAAGIVRRHPDIR 340
Query: 240 WLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIR 299
WLRR D+ L+ I++ LW LKPGGKL++VTCS++ E E Q F +D+IR
Sbjct: 341 WLRRPADLPALAALQRDIVSALWACLKPGGKLVYVTCSIFPTEGEAQVRWFESRLQDAIR 400
Query: 300 LNSPGQLLPTVNKKQ--------------DYDGFFYSLFQKR 327
L++PGQLLP + + D+DGF+Y++FQKR
Sbjct: 401 LHAPGQLLPAMPEAAPVGGFVPGVSSLPLDHDGFYYAVFQKR 442
>gi|300705521|ref|YP_003747124.1| 16S rRNA m5c967 methyltransferase [Ralstonia solanacearum CFBP2957]
gi|299073185|emb|CBJ44543.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Ralstonia
solanacearum CFBP2957]
Length = 443
Score = 260 bits (665), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 138/342 (40%), Positives = 208/342 (60%), Gaps = 34/342 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
M+N +LR FLR++G++ + M + NYP WWI+ V+ YP W+ IL G+++P
Sbjct: 120 MVNGVLRRFLREQGDLVAA-MQADPVAATNYPAWWISAVREAYPE--AWQAILAAGNRRP 176
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
P+ LR+N R+ + +Y L ++G+E IG A++L + + +P F G S+QDA
Sbjct: 177 PMVLRVNPRRVPVDAYLARLAEAGIEAERIGAQAVRLARAVPVGDLPGFAEGDVSVQDAG 236
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLN 179
AQLAA LLD+ G VLDAC+APGGKT HLLE+AD + +++++++ +R I ENL RL
Sbjct: 237 AQLAAALLDVAPGQRVLDACAAPGGKTGHLLELADGLDVVALESDGARAERIGENLARLG 296
Query: 180 LKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIP 239
AT+ + D +K + ++ + FDRIL D+PC+ +G+VRR+PDI
Sbjct: 297 QTATVCVGDAAKPDA----------------WWDGRPFDRILVDVPCSAAGIVRRHPDIR 340
Query: 240 WLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIR 299
WLRR +D+ L+ I++ LW LKPGGKL++VTCS++ E E Q F +D+IR
Sbjct: 341 WLRRPSDLPALAALQRDIVSALWACLKPGGKLVYVTCSIFPTEGEAQVRWFESRLQDAIR 400
Query: 300 LNSPGQLLPTVNKKQ--------------DYDGFFYSLFQKR 327
L++PGQLLP + D+DGF+Y++FQKR
Sbjct: 401 LHAPGQLLPATPEAAPVGGFVPGVSSLPLDHDGFYYAVFQKR 442
>gi|421891360|ref|ZP_16322165.1| 16S rRNA m5C967 methyltransferase,S-adenosyl-L-methionine-dependent
[Ralstonia solanacearum K60-1]
gi|378963308|emb|CCF98913.1| 16S rRNA m5C967 methyltransferase,S-adenosyl-L-methionine-dependent
[Ralstonia solanacearum K60-1]
Length = 443
Score = 260 bits (664), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 138/342 (40%), Positives = 208/342 (60%), Gaps = 34/342 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
M+N +LR FLR++G++ + M + NYP WWI+ V+ YP W+ IL G+++P
Sbjct: 120 MVNGVLRRFLREQGDLVAA-MQADPVAATNYPAWWISAVREAYPE--AWQAILAAGNRRP 176
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
P+ LR+N R+ + +Y L ++G+E IG A++L + + +P F G S+QDA
Sbjct: 177 PMVLRVNPRRVPVDAYLGRLAEAGIEAERIGAQAVRLARAVPVGDLPGFAEGDVSVQDAG 236
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLN 179
AQLAA LLD+ G VLDAC+APGGKT HLLE+AD + +++++++ +R I ENL RL
Sbjct: 237 AQLAAALLDVAPGQRVLDACAAPGGKTGHLLELADGLDVVALESDGARAERIGENLARLG 296
Query: 180 LKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIP 239
AT+ + D +K + ++ + FDRIL D+PC+ +G+VRR+PDI
Sbjct: 297 QTATVCVGDAAKPDA----------------WWDGRPFDRILVDVPCSAAGIVRRHPDIR 340
Query: 240 WLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIR 299
WLRR +D+ L+ I++ LW LKPGGKL++VTCS++ E E Q F +D+IR
Sbjct: 341 WLRRPSDLPALAALQRDIVSALWACLKPGGKLVYVTCSIFPTEGEAQVRWFESRLQDAIR 400
Query: 300 LNSPGQLLPTVNKKQ--------------DYDGFFYSLFQKR 327
L++PGQLLP + D+DGF+Y++FQKR
Sbjct: 401 LHAPGQLLPATPEAAPVGGFIPGVSSLPLDHDGFYYAVFQKR 442
>gi|452126552|ref|ZP_21939135.1| methyltransferase [Bordetella holmesii F627]
gi|451921647|gb|EMD71792.1| methyltransferase [Bordetella holmesii F627]
Length = 443
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 132/330 (40%), Positives = 196/330 (59%), Gaps = 21/330 (6%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN LR FLR++ + F +++ N WN+P WWI +K YP QW+ +L +
Sbjct: 131 LINGSLRRFLRER-DTFAAELANDPVVRWNHPQWWIKTLKQFYPQ--QWQTLLQAANVPA 187
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLRIN+R+ + + +G+ G + + P ++++P + G+ S+QDA
Sbjct: 188 PLTLRINRRRASREQVIEAFTAAGIAARPTGEFGLVVLEPKPVTQLPGYSQGWWSVQDAG 247
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAAPLL + GM VLDAC+APGGKT H+LEIA + L+++DN+ RL + +NL+RL L
Sbjct: 248 AQLAAPLLPLADGMRVLDACAAPGGKTAHMLEIAQLDLVALDNDSRRLERVGQNLERLGL 307
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
+L+ N ++ + FD +LAD+PCT SG+VRR+PDI W
Sbjct: 308 HGAQLLT---------------GDAANPRSWWDGRPFDAVLADVPCTASGIVRRHPDIRW 352
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR D+ + + +I + LW+++ PGG LL+VTCS++ E + QA F+ H D+ L
Sbjct: 353 LRRAPDVARTAALQARIADALWEVVAPGGHLLYVTCSIFPAEGQAQARAFAARHADAQAL 412
Query: 301 NSPGQLLPT---VNKKQDYDGFFYSLFQKR 327
SPGQLLP + +DGFFY+LF KR
Sbjct: 413 PSPGQLLPVAVNATPESQHDGFFYALFAKR 442
>gi|452129928|ref|ZP_21942501.1| methyltransferase [Bordetella holmesii H558]
gi|451922788|gb|EMD72932.1| methyltransferase [Bordetella holmesii H558]
Length = 447
Score = 259 bits (662), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 132/330 (40%), Positives = 196/330 (59%), Gaps = 21/330 (6%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN LR FLR++ + F +++ N WN+P WWI +K YP QW+ +L +
Sbjct: 135 LINGSLRRFLRER-DTFAAELANDPVVRWNHPQWWIKTLKQFYPQ--QWQTLLQAANVPA 191
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLRIN+R+ + + +G+ G + + P ++++P + G+ S+QDA
Sbjct: 192 PLTLRINRRRASREQVIEAFTAAGIAARPTGEFGLVVLEPKPVTQLPGYSQGWWSVQDAG 251
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAAPLL + GM VLDAC+APGGKT H+LEIA + L+++DN+ RL + +NL+RL L
Sbjct: 252 AQLAAPLLPLADGMRVLDACAAPGGKTAHMLEIAQLDLVALDNDSRRLERVGQNLERLGL 311
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
+L+ N ++ + FD +LAD+PCT SG+VRR+PDI W
Sbjct: 312 HGAQLLT---------------GDAANPRSWWDGRPFDAVLADVPCTASGIVRRHPDIRW 356
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR D+ + + +I + LW+++ PGG LL+VTCS++ E + QA F+ H D+ L
Sbjct: 357 LRRAPDVARTAALQARIADALWEVVAPGGHLLYVTCSIFPAEGQAQARAFAARHADAQAL 416
Query: 301 NSPGQLLPT---VNKKQDYDGFFYSLFQKR 327
SPGQLLP + +DGFFY+LF KR
Sbjct: 417 PSPGQLLPVAVNATPESQHDGFFYALFAKR 446
>gi|83748628|ref|ZP_00945646.1| 16S rRNA m(5)C 967 methyltransferase [Ralstonia solanacearum UW551]
gi|207741954|ref|YP_002258346.1| rna methyltransferase (sun protein) [Ralstonia solanacearum
IPO1609]
gi|83724672|gb|EAP71832.1| 16S rRNA m(5)C 967 methyltransferase [Ralstonia solanacearum UW551]
gi|206593340|emb|CAQ60267.1| probable rna methyltransferase (sun protein) [Ralstonia
solanacearum IPO1609]
Length = 443
Score = 259 bits (661), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 138/342 (40%), Positives = 208/342 (60%), Gaps = 34/342 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
M+N +LR FLR++G++ + M + NYP+WWIN V+ YP+ W+ IL G+++P
Sbjct: 120 MVNGVLRRFLREQGDL-AAAMQADPVAATNYPVWWINAVREAYPD--AWQAILAAGNRRP 176
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
P+ LR+N R+ + +Y L + G+E IG A++L + + +P F G S+QDA
Sbjct: 177 PMVLRVNPRRVPVDAYLARLAEGGIEAERIGAQAVRLARAVPVGDLPGFAEGDVSVQDAG 236
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLN 179
AQLAA LLD+ G VLDAC+APGGKT HLLE+ D + +++++++ +R I ENL RL
Sbjct: 237 AQLAAALLDVAPGQRVLDACAAPGGKTGHLLELVDGLDVVALESDGARAERIGENLARLG 296
Query: 180 LKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIP 239
AT+ + D +K + ++ + FDRIL D+PC+ +G+VRR+PDI
Sbjct: 297 QIATVCVGDAAKPDA----------------WWDGRPFDRILVDVPCSAAGIVRRHPDIR 340
Query: 240 WLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIR 299
WLRR D+ L+ I++ LW LKPGGKL++VTCS++ E E Q F +D+IR
Sbjct: 341 WLRRPADLPALAVLQRDIVSALWACLKPGGKLVYVTCSIFPTEGEAQVRWFESRLQDAIR 400
Query: 300 LNSPGQLLPTVNKKQ--------------DYDGFFYSLFQKR 327
L++PGQLLP + + D+DGF+Y++FQKR
Sbjct: 401 LHAPGQLLPAMPEAAPVGGFVPGVSSLPLDHDGFYYAVFQKR 442
>gi|226938995|ref|YP_002794066.1| sun protein [Laribacter hongkongensis HLHK9]
gi|226713919|gb|ACO73057.1| sun protein [Laribacter hongkongensis HLHK9]
Length = 412
Score = 258 bits (660), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 127/327 (38%), Positives = 191/327 (58%), Gaps = 24/327 (7%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R++ E+ + + ++WN+P WWI V+ YP WK +L ++ P
Sbjct: 110 LVNAVLRNAQRRQDEL-EQLLQRDTVAHWNHPEWWIAAVRRAYPR--DWKAVLGASNQHP 166
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
P+TLR+N R+ Y L G T++ AIKL +P +S++P FF G CS+QDA
Sbjct: 167 PMTLRVNTRRVEPAEYLNELASHGHAATLLEDAAIKLVSPCPVSQLPGFFEGLCSVQDAG 226
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLA LLD+ GM VLDAC+APGGKT HLLE + L ++D + RL +S+NL+RL L
Sbjct: 227 AQLATGLLDVADGMRVLDACAAPGGKTGHLLEARTLDLTALDADARRLARVSQNLERLGL 286
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A ++ D + ++ + FDRILAD+PC+ SGVVRR+PDI W
Sbjct: 287 HARVVRGDAATPAA----------------WWDGRPFDRILADVPCSASGVVRRHPDIKW 330
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
RR +D+ + ++ +I + LW ++ GGK+L+ TCS++ E+ EQ F H D+ L
Sbjct: 331 TRRSSDLNQFAQTQRRIADALWPLVASGGKMLYATCSIFPTENREQIDAFLARHADAA-L 389
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQKR 327
QL+P +DGF+Y++ +R
Sbjct: 390 ERDLQLVP----DDTHDGFYYAVLVRR 412
>gi|74316034|ref|YP_313774.1| Fmu, rRNA SAM-dependent methyltransferase [Thiobacillus
denitrificans ATCC 25259]
gi|74055529|gb|AAZ95969.1| Fmu, rRNA SAM-dependent methyltransferase [Thiobacillus
denitrificans ATCC 25259]
Length = 418
Score = 258 bits (660), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 132/332 (39%), Positives = 192/332 (57%), Gaps = 29/332 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+ NA+LR F R++ E+ + + W++P WWI +++ YP +W+ IL P
Sbjct: 109 LANAVLRNFQRRRAEL-DALAEAKPGARWSHPEWWIEKLRAAYPE--RWQAILAASLLHP 165
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
P TLR++ R + SY L ++GL G A+ L + + +P F G S+QDA
Sbjct: 166 PFTLRVSSRHGDVASYLAELNEAGLPAHRSGQQAVTLEKAVPVQLLPGFAEGRVSVQDAG 225
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQ AA LL + G VLDAC+APGGKT H+LE+AD+ L+++D + +RL + ENL RL L
Sbjct: 226 AQHAARLLGAKPGERVLDACAAPGGKTGHILELADVDLVALDVDAARLARVQENLDRLRL 285
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
ATL+ D ++ ++ + FDRILAD+PC+ SGVVRRNPDI W
Sbjct: 286 HATLVEGDAARPEA----------------WWDGRPFDRILADVPCSASGVVRRNPDIKW 329
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH-KDSIR 299
LRR DI + + I+ LW++L+PGG LL+ TCS++ EE+E Q F H +D+ R
Sbjct: 330 LRRPGDIAQFAAQQAVIVEALWRLLRPGGTLLYATCSIFHEENEGQVQAFLARHVQDAER 389
Query: 300 LNSP-----GQLLPTVNKKQDYDGFFYSLFQK 326
+ P G LLP ++DGFFY+L +K
Sbjct: 390 CSLPEPLSDGSLLPDA----EHDGFFYALLRK 417
>gi|332524650|ref|ZP_08400849.1| Sun protein [Rubrivivax benzoatilyticus JA2]
gi|332107958|gb|EGJ09182.1| Sun protein [Rubrivivax benzoatilyticus JA2]
Length = 436
Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 131/343 (38%), Positives = 203/343 (59%), Gaps = 37/343 (10%)
Query: 2 INAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
INA+LR F+R++ ++ + + ++ N+P+WWI +V+ +P QW+ +L + PP
Sbjct: 112 INAVLRRFVRERDKLAAAARHQPLGAF-NHPLWWIERVRHDWPT--QWQALLQASNVHPP 168
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTII-----GPLAIKLHTPISISKIPKFFNGFCSI 116
TLR+N+R+ + +Y + L G T++ G A+ L P ++++P F G S+
Sbjct: 169 FTLRVNRRRGSGEAYVQRLAAQGRAATLVDDAALGGQAVVLAEPCPVTQLPGFAEGEVSV 228
Query: 117 QDAAAQLAAPLL---DIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISE 173
QDAAAQ AAPLL + +G VLDAC+APGGKT HLLE+AD+ ++++D++ RL + E
Sbjct: 229 QDAAAQRAAPLLVGDGLPAGARVLDACAAPGGKTGHLLELADLDVLALDSDPVRLARVQE 288
Query: 174 NLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVR 233
NL RL L+ATL D + R++ + FD IL D PC+ +G+VR
Sbjct: 289 NLNRLQLQATLRAGD----------------ARDTARWWDGRPFDAILLDAPCSAAGIVR 332
Query: 234 RNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKN 293
R+PD+ WLRR +DI L++ +IL+ LW +L PGG+L++ TCSL+ E EQ F +
Sbjct: 333 RHPDVRWLRRPDDITALARLQGEILDALWPLLAPGGRLVYATCSLFRSEGAEQIDAFLQR 392
Query: 294 HKD---SIRLNSPGQLLPTVN-------KKQDYDGFFYSLFQK 326
H D S+ SPG LLP + ++ +DGF+Y+L K
Sbjct: 393 HADSGASLDPLSPGHLLPLADNPSQPSARQALHDGFYYALVHK 435
>gi|299068350|emb|CBJ39574.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Ralstonia
solanacearum CMR15]
Length = 441
Score = 258 bits (658), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 138/340 (40%), Positives = 207/340 (60%), Gaps = 32/340 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
MIN +LR FLR++ ++ + M + NYP WWI V+ YP W+ IL G+++P
Sbjct: 120 MINGVLRRFLREQADL-TAAMQADPVAAINYPAWWIGAVREAYPE--AWQAILAAGNRRP 176
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
P+ LR+N + + +Y L ++G+E IG A++L + + ++P F G S+QDA
Sbjct: 177 PMVLRVNPGRVPVEAYLARLAEAGIEAERIGAQAVRLARAMPVGELPGFAEGDVSVQDAG 236
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLN 179
AQLAA LLD+ G VLDAC+APGGKT HLLE+AD + +++++++ +R I ENL RL
Sbjct: 237 AQLAAALLDVAPGQRVLDACAAPGGKTGHLLELADGLDVVALESDAARAARIGENLARLG 296
Query: 180 LKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIP 239
AT+ + D +K + ++ + FDRIL D+PC+ +G+VRR+PDI
Sbjct: 297 QTATVCVGDAAKPDA----------------WWDGRPFDRILVDVPCSAAGIVRRHPDIR 340
Query: 240 WLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIR 299
WLRR D+ L+ I++ LW LKPGGKL++VTCS++ E E QA F +D+IR
Sbjct: 341 WLRRPADLPALAALQRDIVSALWACLKPGGKLVYVTCSIFPTEGEAQARWFESRLQDAIR 400
Query: 300 LNSPGQLLPTVNKKQ------------DYDGFFYSLFQKR 327
L++PGQLLP + + D+DGF+Y++FQKR
Sbjct: 401 LHAPGQLLPAMPEAAGGFVPGVSSLPLDHDGFYYAVFQKR 440
>gi|422348844|ref|ZP_16429736.1| ribosomal RNA small subunit methyltransferase B [Sutterella
wadsworthensis 2_1_59BFAA]
gi|404658896|gb|EKB31758.1| ribosomal RNA small subunit methyltransferase B [Sutterella
wadsworthensis 2_1_59BFAA]
Length = 446
Score = 258 bits (658), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 140/345 (40%), Positives = 197/345 (57%), Gaps = 43/345 (12%)
Query: 2 INAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
INA+LR +LRKK E+ K K+ + E +N P WWI +++ YP IL++G + PP
Sbjct: 125 INAVLRRYLRKKDELEK-KIASRDEVRFNAPAWWIGRIRTIYPK--DADRILELGTRHPP 181
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+TLR+N R T+ Y LK +GLE +GP AI+L TP+ + +IP F +G S+QDA
Sbjct: 182 MTLRVNVRLMTVEDYLDRLKAAGLEARRVGPEAIELVTPVPVDRIPGFADGLSSVQDAGT 241
Query: 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181
QLAA LL +++G VLDACSAPGGKT H+LE AD + +++ + +R + E L RL LK
Sbjct: 242 QLAAHLLPVKAGDRVLDACSAPGGKTAHILERADCAMTALEIDPARAVKVRETLDRLKLK 301
Query: 182 ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWL 241
A + +D + ++ K FD IL D PCT SGVVRR PD PWL
Sbjct: 302 ADIRTAD----------------AGDTASWWDGKPFDAILLDAPCTASGVVRRQPDTPWL 345
Query: 242 RRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS---- 297
RR +DIKKL+ ++L LW +L+ GG++L+ TCS++ EE Q F D+
Sbjct: 346 RRPDDIKKLASEQKRLLKTLWPLLRKGGRMLYATCSIFPEEGTGQMKAFLAATPDARLVP 405
Query: 298 IRLNSPGQL---------------LPTVNKKQDYDGFFYSLFQKR 327
+ + G L LPTV +DGFFY+L +K+
Sbjct: 406 LFAGNDGMLTLLPEESGEWRSDAQLPTV-----HDGFFYALLEKQ 445
>gi|389871020|ref|YP_006378439.1| methyltransferase [Advenella kashmirensis WT001]
gi|388536269|gb|AFK61457.1| methyltransferase [Advenella kashmirensis WT001]
Length = 492
Score = 257 bits (657), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 137/328 (41%), Positives = 197/328 (60%), Gaps = 20/328 (6%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA LR F R++ E + Y W +P WWI +V+ YP QW+ IL +
Sbjct: 183 LINACLRRFERER-EALLEQAYLRSNVRWGFPKWWIGRVRQAYPA--QWETILASSFQPG 239
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N RKT+ + L++ + T IG + L P+ ++KIP F G+ +QDA
Sbjct: 240 PLTLRVNTRKTSREALLAALQEQDIAATAIGDHGVILDQPLPVAKIPGFEEGWWLVQDAG 299
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAA LL + GM VLDAC+APGGKT LL A ++L ++D + RL ++ NL+RL L
Sbjct: 300 AQLAAQLLPVTDGMRVLDACAAPGGKTAGLLMQARLQLTALDIDEGRLERVAANLQRLQL 359
Query: 181 -KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIP 239
A ++L + I+LK ++ + FD ILAD+PCT SG+VRR+PDI
Sbjct: 360 NDAGVVLRAGNAIDLKS--------------WWDGQPFDAILADVPCTASGIVRRHPDIR 405
Query: 240 WLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIR 299
WLR++ DI +I++ LW+ LKPGG LL+VTCS++ +E EQ + + ++
Sbjct: 406 WLRQEQDIVDTVALQRRIVSALWQTLKPGGTLLYVTCSVFPQEGIEQDQWMQQTLEGAVA 465
Query: 300 LNSPGQLLPTVNKKQDYDGFFYSLFQKR 327
L SPGQLLP + Q++DGFFYSL +K+
Sbjct: 466 LPSPGQLLP--GQGQEHDGFFYSLLRKQ 491
>gi|34499717|ref|NP_903932.1| sun protein [Chromobacterium violaceum ATCC 12472]
gi|34105568|gb|AAQ61922.1| probable sun-like protein [Chromobacterium violaceum ATCC 12472]
Length = 416
Score = 257 bits (656), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 126/326 (38%), Positives = 199/326 (61%), Gaps = 24/326 (7%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++N +LR F R++ E+ + + + N+P WW+ ++K YP +W+ IL+ + P
Sbjct: 114 LVNGVLRNFQRRRDELLANAAAD-EVAQANHPDWWVARLKEAYPA--EWRAILEASNVHP 170
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N+R+ ++ Y + L+++GL +G A++L P+++ +P F G S+QD
Sbjct: 171 PLTLRVNRRRISVDDYLRRLEEAGLAAKALGGDAVQLARPVAVRDLPGFAEGLASVQDEG 230
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQ AA LD++ GM VLDAC+APGGKT H+LE+AD+++ ++D + +RL + +NL+RL L
Sbjct: 231 AQRAAYWLDLKPGMRVLDACAAPGGKTGHMLEMADVEVTALDIDNARLARVGDNLRRLGL 290
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A LI +D S+ + ++ + FDRILAD+PC+ SGVVRR+PDI W
Sbjct: 291 SAQLIEADASRPD----------------EWWGGRPFDRILADVPCSASGVVRRHPDIKW 334
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR D L + + + LW +L GK+L+ TCS++ EE+ Q F K H D+ L
Sbjct: 335 LRRPGDFAALGEQQAGMADALWPLLASRGKMLYATCSIFPEENRLQLEGFLKRHPDASCL 394
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQK 326
QLLP + +DGF+Y+L +K
Sbjct: 395 KEE-QLLPC----ERHDGFYYALLEK 415
>gi|378824115|ref|ZP_09846657.1| ribosomal RNA small subunit methyltransferase B [Sutterella
parvirubra YIT 11816]
gi|378597065|gb|EHY30411.1| ribosomal RNA small subunit methyltransferase B [Sutterella
parvirubra YIT 11816]
Length = 439
Score = 257 bits (656), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 125/342 (36%), Positives = 192/342 (56%), Gaps = 42/342 (12%)
Query: 3 NAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPPL 62
NA+LR +R++ E+ +K+ + +N P WW+ +V+ +P W+ +L+ +PP+
Sbjct: 121 NAVLRRAMRERSEL-AAKLEARDDVRYNVPAWWLARVQTAWPE--NWREVLEPARSRPPM 177
Query: 63 TLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAAQ 122
TLRIN+R+T + +Y L ++G+ ++GP A+ L P+ + +P F G S+QDA Q
Sbjct: 178 TLRINRRRTDMETYRAKLDEAGMAHRVLGPEALMLEAPVPVESVPGFAEGLVSVQDAGVQ 237
Query: 123 LAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKA 182
LAA L ++ G VLDAC+APGGKT HLLE+ D ++ +++ + R I E L RL LKA
Sbjct: 238 LAAHFLPVKPGDRVLDACAAPGGKTAHLLELVDCRMTALEIDPDRARRIEETLSRLGLKA 297
Query: 183 TLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLR 242
++ +D + +L ++ + FD +L D PCT SG+VRR PD+PW R
Sbjct: 298 EILTADAAATDL----------------WWDKEPFDAVLLDAPCTASGIVRRQPDVPWNR 341
Query: 243 RKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS----- 297
R DI+ L++ ++L LW ++K GG LLFVTCS++ EE EQ F D+
Sbjct: 342 RPVDIRALAREQARLLKALWPLVKKGGHLLFVTCSIFPEEGPEQVSRFLAETPDAENVPL 401
Query: 298 -------------IRLNSPGQLLPTVNKKQDYDGFFYSLFQK 326
R SP + P V +DGFFY+LF+K
Sbjct: 402 APGLDGMMRLIPLARDTSPDGIEPAV-----HDGFFYALFRK 438
>gi|311109240|ref|YP_003982093.1| methyltransferase [Achromobacter xylosoxidans A8]
gi|310763929|gb|ADP19378.1| ribosomal RNA small subunit methyltransferase B [Achromobacter
xylosoxidans A8]
Length = 445
Score = 256 bits (655), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 137/330 (41%), Positives = 200/330 (60%), Gaps = 19/330 (5%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
M+NA LR FLR++ + ++ + + E+ WN+P WW+ Q+ + YP +W+ IL +
Sbjct: 131 MLNACLRRFLRERAAL-EAAVADSPEAQWNHPGWWVKQLSVAYPR--EWREILAAANLPA 187
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N+R+ + + +GL +G + L TP ++++P F G+ S+QDA
Sbjct: 188 PLTLRVNRRRASREQVLAAFQAAGLAAEPVGQSGLVLATPKPVTQLPGFAEGWWSVQDAG 247
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAA LL GM VLDACSAPGGKT HLLE+ADI L+++D + RL + +NL RL L
Sbjct: 248 AQLAAELLAPADGMRVLDACSAPGGKTAHLLELADIDLLALDADADRLVRVGQNLDRLGL 307
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
+ ++ LK K FD +LAD+PCT SG+VRR+PDI W
Sbjct: 308 AS-------DRVQLKAADAADLDAWW------DGKPFDAVLADVPCTASGIVRRHPDIRW 354
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR+ND+++ + IL+ LW+ + PGG+LL+VTCS++ E QA+ F + H D+ RL
Sbjct: 355 LRRENDVRRTATLQSSILDALWRTVAPGGRLLYVTCSIFPIEGARQALEFMQRHPDAQRL 414
Query: 301 NSPGQLLPT---VNKKQDYDGFFYSLFQKR 327
+PGQLLP +DGFFY+LF K+
Sbjct: 415 EAPGQLLPVAVDATPAAQHDGFFYALFAKQ 444
>gi|365097363|ref|ZP_09331508.1| 16S rRNA methyltransferase B [Acidovorax sp. NO-1]
gi|363413376|gb|EHL20574.1| 16S rRNA methyltransferase B [Acidovorax sp. NO-1]
Length = 441
Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 128/342 (37%), Positives = 203/342 (59%), Gaps = 32/342 (9%)
Query: 2 INAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
+N LR FLR++ E ++ + WN+P+WWI +++ +P W+ IL + P
Sbjct: 113 LNGCLRRFLRER-EALVARTDRDPLARWNHPVWWIERLRKDHPT--HWEQILRANNAHAP 169
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+TLR+N +K+T + Y K L LE +G + + L P+ + +P F G+ S+QDAAA
Sbjct: 170 MTLRVNAQKSTPVLYQKALAAINLEAKPVGDMGLLLRKPVPVPTLPGFAEGWVSVQDAAA 229
Query: 122 QLAAPLL----DIRSGMYVLDACSAPGGKTCHLLEIAD----IKLISVDNNLSRLNMISE 173
Q+AAPLL D+ + VLDAC+APGGKT HLLE+A +++ +++ + R I +
Sbjct: 230 QMAAPLLLGGLDLAQPLRVLDACAAPGGKTAHLLEMAGSGSPLQVTALEVDAVRSTRIGD 289
Query: 174 NLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVR 233
L+RL L+A ++++D ++ + + + FD IL D PCT SG+VR
Sbjct: 290 ALQRLGLRAKVVVADAAR------------PQDWWQQHCEGVPFDAILLDAPCTASGIVR 337
Query: 234 RNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKN 293
R+PD+ WLRR++DI +L++ ++L LW +L+PGG+LL+ TCS++ EE +EQ F +
Sbjct: 338 RHPDVRWLRRESDIAQLARLQARLLAALWPLLRPGGRLLYCTCSVFREEGDEQVQTFLAH 397
Query: 294 HKDSIRLNSPGQLLP---------TVNKKQDYDGFFYSLFQK 326
+ D+ L SPG L+P N+ D+DGFFY+L QK
Sbjct: 398 NTDATLLPSPGHLIPGNDDKRGAVPDNQSGDHDGFFYALLQK 439
>gi|17544794|ref|NP_518196.1| RNA methyltransferase (SUN protein) [Ralstonia solanacearum
GMI1000]
gi|17427083|emb|CAD13603.1| putative rna methyltransferase (sun protein) [Ralstonia
solanacearum GMI1000]
Length = 441
Score = 256 bits (653), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 138/340 (40%), Positives = 205/340 (60%), Gaps = 32/340 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
MIN +LR FLR++ ++ + M + NYP WWI V+ YP W+ IL G+++P
Sbjct: 120 MINGVLRRFLREQADL-TAAMQADPVAAINYPAWWIGAVREAYPE--AWQAILAAGNRRP 176
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
P+ LR+N + + +Y L + G+E IG A++L + + +P F G S+QDA
Sbjct: 177 PMVLRVNPSRVPVEAYLARLAEVGIEAERIGAQAVRLARAMPVGDLPGFAEGDVSVQDAG 236
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLN 179
AQLAA LLD+ G VLDAC+APGGKT HLLE+AD + +++++++ +R I ENL RL
Sbjct: 237 AQLAAALLDVAPGQRVLDACAAPGGKTGHLLELADGLDVVALESDAARAARIGENLARLG 296
Query: 180 LKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIP 239
AT+ + D +K + ++ + FDRIL D+PC+ +G+VRR+PDI
Sbjct: 297 QTATVCVGDAAKPDA----------------WWDGRPFDRILVDVPCSAAGIVRRHPDIR 340
Query: 240 WLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIR 299
WLRR D+ L+ I++ LW LKPGGKL++VTCS++ E E QA F +D+IR
Sbjct: 341 WLRRPADLPALAALQRDIVSALWACLKPGGKLVYVTCSIFPTEGEAQARWFESRLQDAIR 400
Query: 300 LNSPGQLLPTVNKKQ------------DYDGFFYSLFQKR 327
L++PGQLLP + + D+DGF+Y++FQKR
Sbjct: 401 LHAPGQLLPAMPEAAGGFVPGVSSLPLDHDGFYYAVFQKR 440
>gi|372487495|ref|YP_005027060.1| ribosomal RNA small subunit methyltransferase RsmB [Dechlorosoma
suillum PS]
gi|359354048|gb|AEV25219.1| ribosomal RNA small subunit methyltransferase RsmB [Dechlorosoma
suillum PS]
Length = 445
Score = 254 bits (650), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 125/330 (37%), Positives = 192/330 (58%), Gaps = 27/330 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR +LR++ E+ ++W +P WW+++++ YP W+ I G+ +P
Sbjct: 137 VINGVLRSYLRQRPELLARAAGKPSGAWW-HPDWWLSRLRRAYPR--DWEAIATAGNGQP 193
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
P+TLR+N + + Y L +G+ +G A+ L P+ + +P FF+GF S+QD
Sbjct: 194 PMTLRVNLARGSREEYQARLDAAGIAAVPLGSAALLLQKPVPVDALPGFFDGFVSVQDWG 253
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQ AA LLD R+G VLDAC+APGGKT H+LE A + L+++D + R + ENL RL L
Sbjct: 254 AQRAAELLDARAGQRVLDACAAPGGKTAHILEQAGVDLLALDMDGLRCRRVEENLSRLGL 313
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
+A + +D + ++ + FDRILAD+PC+ SGVVRR+PD W
Sbjct: 314 RAVVRAADARCPD----------------DWWDGRPFDRILADVPCSASGVVRRHPDSKW 357
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR+ DI + ++ +IL LW L GG+LL+ TCS++ EE+ +Q F H D+ R+
Sbjct: 358 LRRETDIAQFARVQRQILEVLWPTLAVGGRLLYATCSVFPEENSQQVSAFLARHGDARRI 417
Query: 301 NSPG----QLLPTVNKKQDYDGFFYSLFQK 326
G QLLP ++DGF+Y+L +K
Sbjct: 418 GIDGADELQLLPG----SEHDGFYYALLEK 443
>gi|237654726|ref|YP_002891040.1| sun protein [Thauera sp. MZ1T]
gi|237625973|gb|ACR02663.1| sun protein [Thauera sp. MZ1T]
Length = 435
Score = 254 bits (648), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 129/331 (38%), Positives = 198/331 (59%), Gaps = 27/331 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++N +LR LR++ E ++ + E+ +P WW+ +V+ +P W+++L G+ +P
Sbjct: 127 LVNGVLRNALRRQPE-WQGWIEAEPEARHAFPAWWVERVRSAHPQ--AWQDLLAAGNTRP 183
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
P+ LR+N R+ TL L +GLE + A+ L P++++++P + G S+QDA
Sbjct: 184 PMALRVNPRRATLAEVEAELAAAGLEFRRLDNDALVLARPLAVARLPGYAEGRLSVQDAG 243
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQ AA LLD+R+G VLDAC+APGGKT H+LE AD L++++ + R ++ NL RL L
Sbjct: 244 AQWAAQLLDVRAGERVLDACAAPGGKTAHILERADADLLALELDPLRAGRVARNLDRLGL 303
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
+A L ++D ++ ++ + FDRILAD+PC+ SGVVRR+PDI W
Sbjct: 304 RAELKVADCRRLAA----------------WWDGRPFDRILADVPCSASGVVRRHPDIKW 347
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR +DI + +IL LW+ L PGG +L+VTCS++ EE+ Q F H D+ RL
Sbjct: 348 LRRDSDIANFAAQQAEILEALWRTLAPGGTMLYVTCSVFDEENAGQVARFCVRHADAERL 407
Query: 301 NSPG----QLLPTVNKKQDYDGFFYSLFQKR 327
G QLLP D+DGF+Y+L +KR
Sbjct: 408 PIRGSSDLQLLPCA----DHDGFYYALLRKR 434
>gi|348589424|ref|YP_004873886.1| ribosomal RNA small subunit methyltransferase B [Taylorella
asinigenitalis MCE3]
gi|347973328|gb|AEP35863.1| Ribosomal RNA small subunit methyltransferase B [Taylorella
asinigenitalis MCE3]
Length = 430
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 138/327 (42%), Positives = 197/327 (60%), Gaps = 26/327 (7%)
Query: 1 MINAILREFLRKKGEIFKS-KMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKK 59
++NA LR FLR K + + + IH +YP WW ++ +YP ++++IL
Sbjct: 128 LLNACLRNFLRNKDALQANLSEFEIH----SYPKWWYEKIHDSYPE--KYESILRSDKIS 181
Query: 60 PPLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDA 119
PPLTLR+N+RKT Y +L+ G+E+ +IG +++ I+ +P + G S+QD
Sbjct: 182 PPLTLRVNERKTAQTEYQAMLEDIGVESEVIGDAGLRVAGVGDIATLPGYSEGLFSVQDL 241
Query: 120 AAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLN 179
AQ AA L +++G YVLDAC+APGGKT HLLE D++L+++D + RL + ENL RL+
Sbjct: 242 GAQYAAFQLPLQNGNYVLDACAAPGGKTAHLLERFDLELLALDIDSDRLAKVQENLSRLD 301
Query: 180 LKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIP 239
L + L+K ++ ++ + FD ILAD+PCTGSGVVRR+PDI
Sbjct: 302 LMGP-------NVRLQKADASVSD-------WWDGRMFDAILADVPCTGSGVVRRHPDIK 347
Query: 240 WLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIR 299
WLR+ DI K + KIL NLWKMLK GG LL+VTCS++ EE E QA F+ + R
Sbjct: 348 WLRKSEDISKTVQLQRKILINLWKMLKSGGHLLYVTCSVFQEEGELQAAYFTSILDGAER 407
Query: 300 LNSPGQLLPTVNKKQDYDGFFYSLFQK 326
L + G LLP + DGFFY+LF+K
Sbjct: 408 LPALGHLLPP-----EQDGFFYALFKK 429
>gi|260222513|emb|CBA32151.1| Ribosomal RNA small subunit methyltransferase B [Curvibacter
putative symbiont of Hydra magnipapillata]
Length = 457
Score = 252 bits (644), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 130/339 (38%), Positives = 195/339 (57%), Gaps = 32/339 (9%)
Query: 2 INAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
INA LR FLR++ E + + E+ WN+P WWI +VK +P W+ IL ++ PP
Sbjct: 136 INACLRRFLRER-EALVTATNDRPEARWNHPAWWIKRVKEEHPQ--DWQTILQNANRHPP 192
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+TLR+N RK Y++ LK +G++ + ++L + +S +P F G S+QD AA
Sbjct: 193 MTLRVNVRKVQASEYHQQLKSAGIDVALESGSLLELTKAVPVSALPGFSEGLVSVQDGAA 252
Query: 122 QLAAPLL----DIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKR 177
Q+AA LL +LDAC+APGGKT HLLE+ D ++++++ + R I + L R
Sbjct: 253 QMAAKLLLAGVPAHGHPRILDACAAPGGKTAHLLELCDAEVLALEVDGQRAERIHQTLSR 312
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L A + +D + ++ FD +L D PCT SG+VRR+PD
Sbjct: 313 LGLTANVQTADAADTGT----------------WWNGNPFDYVLLDAPCTASGIVRRHPD 356
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR++D+ +L+ K+L LW LKPGGKLL+ TCS++ E +Q F +++KD+
Sbjct: 357 IRWLRRESDVLQLAMEQKKLLAALWSTLKPGGKLLYCTCSIFRAEGADQVKSFLESNKDA 416
Query: 298 IRLNSPGQLLPTV---------NKKQDYDGFFYSLFQKR 327
+ L SPG LLP N+ D+DGFFY+LF+K+
Sbjct: 417 VLLPSPGHLLPQSGQSGQDVADNQHGDHDGFFYALFEKK 455
>gi|451823350|ref|YP_007459624.1| ribosomal RNA small subunit methyltransferase B [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
gi|451776150|gb|AGF47191.1| ribosomal RNA small subunit methyltransferase B [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
Length = 439
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 137/333 (41%), Positives = 206/333 (61%), Gaps = 25/333 (7%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NAILR FLR+K I S ++ WNY WWI++V+ YP QW++IL + +
Sbjct: 126 LLNAILRRFLREKDNI-NSYFRKDLKAVWNYQEWWIDKVQKCYP--LQWQSILSCANTQS 182
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PL LR+N+R + S +E G I L+ SI +P F G+ S+QD+
Sbjct: 183 PLILRVNKRNINREKVLEEFASSNIEAKSFGESGILLYKSRSIKDMPGFDEGWWSVQDSG 242
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLA PLL I+ GM VLDAC+APGGKT HLLE+AD+KL+++D+N RLN + NL+RL L
Sbjct: 243 AQLAIPLLQIQDGMRVLDACAAPGGKTSHLLELADVKLLALDSNKIRLNRLQANLERLKL 302
Query: 181 KAT---LILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
++ +++D +N +++ F+ ++AD+PCT SG+VR++PD
Sbjct: 303 NSSNTRFLVADAGSLN----------------QWWDGVMFNVVIADVPCTASGIVRKHPD 346
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLR+ +DI+K +IL +LWK + GG LL+VTCS++ EE QA+ F + H+D+
Sbjct: 347 IRWLRKYSDIQKSVLLQKRILESLWKTVVSGGLLLYVTCSIFPEECIFQALSFLERHQDA 406
Query: 298 IRLNSPGQLLPTVNKKQ---DYDGFFYSLFQKR 327
I L+S Q+LP ++ + D DGFF++LF+K+
Sbjct: 407 IFLDSHNQILPNKSQNELFVDNDGFFFALFKKK 439
>gi|399117236|emb|CCG20050.1| ribosomal RNA small subunit methyltransferase [Taylorella
asinigenitalis 14/45]
Length = 430
Score = 251 bits (641), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 137/327 (41%), Positives = 196/327 (59%), Gaps = 26/327 (7%)
Query: 1 MINAILREFLRKKGEIFKS-KMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKK 59
++NA LR FLR K + + + IH +YP WW ++ +YP ++++IL
Sbjct: 128 LLNACLRNFLRNKDALQANLSEFEIH----SYPKWWYEKIHDSYPE--KYESILRSDKIS 181
Query: 60 PPLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDA 119
PPLTLR+N+RKT Y +L+ G+E+ +IG +++ I+ +P + G S+QD
Sbjct: 182 PPLTLRVNERKTAQTEYQAMLEDIGVESEVIGDAGLRVAGVGDIATLPGYSEGLFSVQDL 241
Query: 120 AAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLN 179
AQ AA L ++ G YVLDAC+APGGKT HLLE D++L+++D + RL + ENL RL+
Sbjct: 242 GAQYAAFQLPLQKGNYVLDACAAPGGKTAHLLERFDLELLALDIDSDRLAKVQENLSRLD 301
Query: 180 LKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIP 239
L + L+K ++ ++ + FD ILAD+PCTGSGVVRR+PDI
Sbjct: 302 LMGP-------NVRLQKADASVSD-------WWDGRMFDAILADVPCTGSGVVRRHPDIK 347
Query: 240 WLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIR 299
WLR+ DI K + KI+ NLWKMLK GG LL+VTCS++ EE E QA F+ + R
Sbjct: 348 WLRKSEDISKTVQLQRKIIINLWKMLKSGGHLLYVTCSVFQEEGELQAAYFTSILDGAER 407
Query: 300 LNSPGQLLPTVNKKQDYDGFFYSLFQK 326
L + G LLP + DGFFY+LF+K
Sbjct: 408 LPALGHLLPP-----EQDGFFYALFKK 429
>gi|429462983|ref|YP_007184446.1| 16S rRNA (cytosine967-C5)-methyltransferase [Candidatus
Kinetoplastibacterium crithidii (ex Angomonas deanei
ATCC 30255)]
gi|451811765|ref|YP_007448220.1| ribosomal RNA small subunit methyltransferase B [Candidatus
Kinetoplastibacterium crithidii TCC036E]
gi|429338497|gb|AFZ82920.1| 16S rRNA (cytosine967-C5)-methyltransferase [Candidatus
Kinetoplastibacterium crithidii (ex Angomonas deanei
ATCC 30255)]
gi|451776923|gb|AGF47922.1| ribosomal RNA small subunit methyltransferase B [Candidatus
Kinetoplastibacterium crithidii TCC036E]
Length = 446
Score = 250 bits (639), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 135/330 (40%), Positives = 198/330 (60%), Gaps = 18/330 (5%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA LR FLR I + ++ WNY WWI ++K YP +W IL +
Sbjct: 132 LLNASLRSFLRDASGISMLAKKS-SKATWNYQEWWIEKIKTNYPT--RWTEILSCADIQA 188
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N + + + L +G+E I L SI +P F G S+QD
Sbjct: 189 PLTLRVNIKNSNRDNVLNLFNDNGVEAKAFSSSGIVLGRSYSIKDLPGFQQGMWSVQDPG 248
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAAPLL ++ GM VLDAC+APGGKT HLLE+A+I L+++D+N SRL + ENL RLNL
Sbjct: 249 AQLAAPLLCVKDGMKVLDACAAPGGKTSHLLELAEIDLMALDSNKSRLGRLQENLDRLNL 308
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
+ N+K + D + +++ K FD ILAD+PCT SG+VR++PDI W
Sbjct: 309 YSK---------NIKIIEGDAKQIG----QWWDGKLFDIILADVPCTSSGIVRKHPDIRW 355
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
+++ +DI+ + I+++LWK L PGG+ L+ TCS++ EE Q ++F + H D++ L
Sbjct: 356 IKKNDDIETVRLIQSGIMDSLWKTLVPGGRFLYSTCSIFPEECIYQILLFLEKHNDALLL 415
Query: 301 NSPGQLLPTVNK--KQDYDGFFYSLFQKRK 328
+SPGQ+LPT++ +DGFF++L K K
Sbjct: 416 DSPGQILPTISNVLTVGHDGFFFALLTKAK 445
>gi|315125135|ref|YP_004067138.1| 16S rRNA methyltransferase [Pseudoalteromonas sp. SM9913]
gi|315013648|gb|ADT66986.1| 16S rRNA methyltransferase [Pseudoalteromonas sp. SM9913]
Length = 431
Score = 250 bits (638), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 131/338 (38%), Positives = 207/338 (61%), Gaps = 35/338 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INAILR F R++ E+ + K I +N+P W+I QVK YP+ W++IL+ ++
Sbjct: 117 LINAILRSFQRQQAEL-EEKAKQIPVCLYNHPNWFIKQVKEAYPD--SWEDILEANQQQA 173
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+NQ + + Y+++L + +E T+ IKL P + +P+F G CS+QD
Sbjct: 174 PMWLRVNQSQFSTQEYSEMLTANDIEHTLNPDFIDGIKLSKPRDVFSLPEFDTGACSVQD 233
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRL 178
AAAQLAA LD ++G +LDAC+APGGKTCH+LE+AD ++++D++ +RL + +NL+R+
Sbjct: 234 AAAQLAARYLDPQNGDSILDACAAPGGKTCHILELADADVLALDSDATRLERVKQNLERI 293
Query: 179 NLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDI 238
L A L D S+ + ++ + FDRIL D+PC+ +GV+RR+PDI
Sbjct: 294 GLGADLQCGDASQPH----------------TWWDEEQFDRILLDVPCSATGVIRRHPDI 337
Query: 239 PWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSI 298
WLRR +DI LS IL+++W +LKPGG L++ TCS+ +E+++Q F N++D+
Sbjct: 338 KWLRRASDINDLSTLQGDILDSIWPLLKPGGTLVYATCSVLPQENQQQVAKFLANNEDAE 397
Query: 299 RL--------NSPG-QLLPTVNKKQDYDGFFYSLFQKR 327
+ +PG QLLP + DGF+Y+ K+
Sbjct: 398 HIPLHSEDTKTTPGLQLLPG-----ESDGFYYAKLVKK 430
>gi|392310460|ref|ZP_10272994.1| 16S rRNA methyltransferase [Pseudoalteromonas citrea NCIMB 1889]
Length = 428
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 132/339 (38%), Positives = 202/339 (59%), Gaps = 35/339 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INAILR F R++ E+ S I +N+P W+I +++ YP+ W++IL ++
Sbjct: 114 LINAILRTFQRQQEELEASANL-IPVCQFNHPGWFIKKLQAAYPDT--WQDILHENQQQA 170
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+NQ T Y+++L + G+E ++ P I L P + +P F G CS+QD
Sbjct: 171 PMWLRVNQHHYTTAEYSEMLDEDGIEHSVESAYPDGILLDKPCDVFTLPGFREGACSVQD 230
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRL 178
AAAQ+AA LL+ ++ +LDAC+APGGKTCH+LE+AD ++ ++D + RL + +NLKR+
Sbjct: 231 AAAQMAARLLEPQADELILDACAAPGGKTCHILELADAQVHALDADDQRLERVEQNLKRI 290
Query: 179 NLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDI 238
L+A I +D S + ++ N +DRIL D+PC+ +GV+RR+PDI
Sbjct: 291 GLRAECIHADASTPD----------------TWWDNTPYDRILLDVPCSATGVIRRHPDI 334
Query: 239 PWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSI 298
WLRRK DI L+ ILNN+W +LKPGG L++ TCS+ EE+ +Q F N+ D+I
Sbjct: 335 KWLRRKTDIDDLATLQASILNNIWPLLKPGGTLIYATCSVLPEENTQQVAKFLANNSDAI 394
Query: 299 RL--------NSPG-QLLPTVNKKQDYDGFFYSLFQKRK 328
PG QLLP ++ DGF+Y+ K++
Sbjct: 395 HHPLHDNDTPEHPGLQLLPGLS-----DGFYYAKLTKQQ 428
>gi|56477026|ref|YP_158615.1| tRNA and rRNA cytosine-C5-methylase sun [Aromatoleum aromaticum
EbN1]
gi|56313069|emb|CAI07714.1| tRNA and rRNA cytosine-C5-methylases sun [Aromatoleum aromaticum
EbN1]
Length = 447
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 116/329 (35%), Positives = 195/329 (59%), Gaps = 21/329 (6%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESY-WNYPIWWINQVKITYPNFFQWKNILDVGHKK 59
++N +LR+ LR + E+ + + E+ + +P WW+ QV+ +P W+ L+ G+++
Sbjct: 139 VVNGVLRKRLRDEHEL--AALVEADEAARYRHPAWWVAQVRAAWPG--DWEAALEAGNQR 194
Query: 60 PPLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDA 119
PP+ LR+N+ + ++ + L+ +G+ + + A+ L P+ ++ +P F G S+QDA
Sbjct: 195 PPMALRVNRTRASVEAVEAELRNAGIGSRRLANDALVLDKPVPVASLPGFATGRVSVQDA 254
Query: 120 AAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLN 179
AQ AA LD+ G VLDAC+APGGK H+LE ++L++++ + R+ I +NL+RL
Sbjct: 255 GAQWAARWLDLAPGQRVLDACAAPGGKAAHILETKPVELVALELDPKRVQRIRDNLERLG 314
Query: 180 LKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIP 239
L A ++ +D ++ ++ + FDRILAD+PC+ SGV RR+PDI
Sbjct: 315 LDAQVLRADCRALDT----------------WWDGRPFDRILADVPCSASGVARRHPDIK 358
Query: 240 WLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIR 299
WLRR+ D+++ + I++ LW L PGG++L+VTCS++ EE+ Q S H D R
Sbjct: 359 WLRRREDVRRFAAQQADIVDALWPTLAPGGRMLYVTCSVFNEENTAQIARLSARHPDLER 418
Query: 300 LNSPGQLLPTVNKKQDYDGFFYSLFQKRK 328
L G+L + D+DGFFY+L KR+
Sbjct: 419 LEIDGRLERQLLPATDHDGFFYALLGKRR 447
>gi|359446417|ref|ZP_09236094.1| ribosomal RNA small subunit methyltransferase B [Pseudoalteromonas
sp. BSi20439]
gi|358039756|dbj|GAA72343.1| ribosomal RNA small subunit methyltransferase B [Pseudoalteromonas
sp. BSi20439]
Length = 431
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 135/338 (39%), Positives = 207/338 (61%), Gaps = 35/338 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INAILR F R++ E+ + K I +N+P W+I QVK YPN W++IL+ ++
Sbjct: 117 LINAILRSFQRQQLEL-EEKAKQIPVCLYNHPNWFIKQVKEAYPN--NWEDILEANQQQA 173
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+NQ + + Y+++L + +E T+ IKL P + +P+F G CS+QD
Sbjct: 174 PMWLRVNQSQFSTQEYSEMLTANDIEHTLNPDFIDGIKLSKPRDVFSLPEFDTGACSVQD 233
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRL 178
AAAQLAA LD ++G +LDAC+APGGKTCH+LE+AD ++++D++ +RL + +NL+R+
Sbjct: 234 AAAQLAARYLDPQNGDAILDACAAPGGKTCHILELADADVLALDSDATRLERVKQNLERI 293
Query: 179 NLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDI 238
L A L D S+ + ++ + FDRIL D+PC+ +GV+RR+PDI
Sbjct: 294 GLGADLQCGDASQPH----------------TWWDEEQFDRILLDVPCSATGVIRRHPDI 337
Query: 239 PWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD-- 296
WLRR +DI LS IL+++W +LKPGG L++ TCS+ +E+++Q F N+ D
Sbjct: 338 KWLRRASDINDLSTLQGDILDSIWPLLKPGGTLVYATCSVLPQENQQQVAKFLANNDDVE 397
Query: 297 SIRLNS------PG-QLLPTVNKKQDYDGFFYSLFQKR 327
I L+S PG QLLP + DGF+Y+ K+
Sbjct: 398 HIPLHSEDTKTTPGLQLLPG-----ESDGFYYAKLVKK 430
>gi|121609225|ref|YP_997032.1| sun protein [Verminephrobacter eiseniae EF01-2]
gi|121553865|gb|ABM58014.1| sun protein [Verminephrobacter eiseniae EF01-2]
Length = 470
Score = 248 bits (632), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 126/343 (36%), Positives = 196/343 (57%), Gaps = 34/343 (9%)
Query: 2 INAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
INA LR FLR++ E + + + WN+P WWI Q++ +P W+ IL ++ P
Sbjct: 141 INACLRRFLRER-EALLAATDDDPLARWNHPRWWIRQLRQDHPR--HWQQILQANNRHAP 197
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+ LR+NQRK +L Y + L ++ T++ + + L P+ + +P F G+ S+QDAAA
Sbjct: 198 MVLRVNQRKCSLAQYLRALDAIDMQATVVADMGLALRQPVPVQALPGFAQGWVSVQDAAA 257
Query: 122 QLAAPLL----DIRSGMYVLDACSAPGGKTCHLLEIAD----IKLISVDNNLSRLNMISE 173
Q AAPLL D+R + VLDAC+APGGKT HLLE+A +++ +++ + +R I
Sbjct: 258 QKAAPLLLQGLDLRQPLRVLDACAAPGGKTAHLLELAGADAPLQVTALEIDATRSARIDA 317
Query: 174 NLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFY-KNKYFDRILADLPCTGSGVV 232
+L+RL L A ++++D ++ + ++ + FD IL D PC+ SG+V
Sbjct: 318 SLQRLGLGAQVLVADATR-------------PQDWWQPHCGGAPFDAILLDAPCSASGIV 364
Query: 233 RRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSK 292
RR+PD+ WLRR DI L+ ++L LW +L+PGG+LL+ +CS++ E + F
Sbjct: 365 RRHPDVRWLRRATDIAPLAALQARLLRALWPLLRPGGRLLYCSCSVFRAEGDAPVQAFLA 424
Query: 293 NHKDSIRLNSPGQLLP---------TVNKKQDYDGFFYSLFQK 326
+H D+ L SPG LLP N D+DGFFY+L K
Sbjct: 425 HHTDARLLPSPGHLLPGNADKDGAVPDNAGGDHDGFFYALLHK 467
>gi|392557230|ref|ZP_10304367.1| 16S rRNA methyltransferase [Pseudoalteromonas undina NCIMB 2128]
Length = 431
Score = 248 bits (632), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 134/338 (39%), Positives = 207/338 (61%), Gaps = 35/338 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INAILR F R++ E+ + K I +N+P W+I QVK YP+ W++IL+ ++
Sbjct: 117 LINAILRSFQRQQVEL-EEKAKQIPVCLYNHPNWFIKQVKEAYPD--HWEDILEANQQQA 173
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+NQ + + Y+++L + +E T+ IKL P + +P+F G CS+QD
Sbjct: 174 PMWLRVNQSQFSTQEYSEMLTANDIEHTLNPDFIDGIKLSKPRDVFSLPEFDTGACSVQD 233
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRL 178
AAAQLAA LD ++G +LDAC+APGGKTCH+LE+AD ++++D++ +RL + +NL+R+
Sbjct: 234 AAAQLAARYLDPQNGDAILDACAAPGGKTCHILELADADVLALDSDATRLERVKQNLERI 293
Query: 179 NLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDI 238
L A L D S+ + ++ + FDRIL D+PC+ +GV+RR+PDI
Sbjct: 294 GLGADLQCGDASQPH----------------TWWDEEQFDRILLDVPCSATGVIRRHPDI 337
Query: 239 PWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD-- 296
WLRR +DI LS IL+++W +LKPGG L++ TCS+ +E+++Q F N+ D
Sbjct: 338 KWLRRASDINDLSTLQGDILDSIWPLLKPGGTLVYATCSVLPQENQQQVAKFLANNDDVE 397
Query: 297 SIRLNS------PG-QLLPTVNKKQDYDGFFYSLFQKR 327
I L+S PG QLLP + DGF+Y+ K+
Sbjct: 398 HIPLHSEDTKTTPGLQLLPG-----ESDGFYYAKLVKK 430
>gi|440502957|gb|AGC09556.1| Sun protein [uncultured organism]
Length = 489
Score = 247 bits (631), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 127/346 (36%), Positives = 195/346 (56%), Gaps = 44/346 (12%)
Query: 3 NAILREFLRKKGEI--------------FKSKMYNIHES---YWNYPIWWINQVKITYPN 45
NA+LR FLR++ + + M + ++ ++ +P WWI++V+ +P
Sbjct: 164 NALLRTFLREREALHPEALAEAARASASVPASMPEVQDAAVAHFRHPRWWIDKVRAQHP- 222
Query: 46 FFQWKNILDVGHKKPPLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISK 105
W+ IL G+ PP+ LR+N+R+ +G+ +GP+A+ L P+ ++K
Sbjct: 223 -LDWERILHAGNTHPPMGLRLNRRRIDEAEALARFAAAGIAVRQVGPMALLLERPMPVAK 281
Query: 106 IPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNL 165
P G+ S QD AQLAA LL G VLDAC+APGGK+ HLLE+ADI+L ++D
Sbjct: 282 APGIAEGWVSPQDVGAQLAARLLAPLDGERVLDACAAPGGKSAHLLELADIELTAIDVEE 341
Query: 166 SRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLP 225
+RL + L RL + A ++ D + R++ + FD ILAD+P
Sbjct: 342 TRLAPLRRALARLGVAAKVLRGD----------------ARHPARWWDGRPFDAILADVP 385
Query: 226 CTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEE 285
C+GSGV RR+PDI WLRR D+ ++ +IL+ LW +LKPGG+LL+ TCS++ EE+EE
Sbjct: 386 CSGSGVARRHPDIKWLRRTEDVAGFAQQQREILDGLWPLLKPGGRLLYATCSIFAEENEE 445
Query: 286 QAIIFSKNHKDSIRLNSPGQ-----LLPTVNKKQDYDGFFYSLFQK 326
Q +F K H+D+ + G+ LLP + +DGFFY+L +K
Sbjct: 446 QVRVFVKRHRDARLVPLDGERETLALLP----DETHDGFFYALLRK 487
>gi|359438233|ref|ZP_09228269.1| ribosomal RNA small subunit methyltransferase B [Pseudoalteromonas
sp. BSi20311]
gi|358027072|dbj|GAA64518.1| ribosomal RNA small subunit methyltransferase B [Pseudoalteromonas
sp. BSi20311]
Length = 431
Score = 247 bits (631), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 135/338 (39%), Positives = 207/338 (61%), Gaps = 35/338 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INAILR F R++ E+ + K I +N+P W+I QVK YPN W++IL+ ++
Sbjct: 117 LINAILRSFQRQQLEL-EEKAKQIPVCLYNHPNWFIKQVKEAYPN--NWEDILEANQQQA 173
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+NQ + + Y+++L + +E T+ IKL P + +P+F G CS+QD
Sbjct: 174 PMWLRVNQSQFSTQEYSEMLTANDIEHTLNPDFIDGIKLSKPRDVFSLPEFDTGACSVQD 233
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRL 178
AAAQLAA LD ++G +LDAC+APGGKTCH+LE+AD ++++D++ +RL + +NL+R+
Sbjct: 234 AAAQLAARYLDPQNGDDILDACAAPGGKTCHILELADADVLALDSDATRLERVKQNLERI 293
Query: 179 NLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDI 238
L A L D S+ + ++ + FDRIL D+PC+ +GV+RR+PDI
Sbjct: 294 GLGADLQCGDASQPH----------------TWWDEEQFDRILLDVPCSATGVIRRHPDI 337
Query: 239 PWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD-- 296
WLRR +DI LS IL+++W +LKPGG L++ TCS+ +E+++Q F N+ D
Sbjct: 338 KWLRRASDINDLSTLQGDILDSIWPLLKPGGTLVYATCSVLPQENQQQVAKFLANNDDVE 397
Query: 297 SIRLNS------PG-QLLPTVNKKQDYDGFFYSLFQKR 327
I L+S PG QLLP + DGF+Y+ K+
Sbjct: 398 HIPLHSEDTKATPGLQLLPG-----ESDGFYYAKLVKK 430
>gi|118594095|ref|ZP_01551442.1| sun; rRNA methylase [Methylophilales bacterium HTCC2181]
gi|118439873|gb|EAV46500.1| sun; rRNA methylase [Methylophilales bacterium HTCC2181]
Length = 423
Score = 247 bits (630), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 126/335 (37%), Positives = 204/335 (60%), Gaps = 32/335 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR FLR K ++ + ES +NYP+WW++++K Y W+++L +G+ P
Sbjct: 111 LVNAVLRTFLRNKEKLIQG-FAGQSESKYNYPLWWVDKMKEQYVE--HWEDVLRIGNVHP 167
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
P+T+R+N++K T+ Y+ +L+ + + +I A+ + TPI++ +P F G+ S+QD
Sbjct: 168 PMTIRVNKKKITVEKYSDILRSNNINHVLIHGNALIIDTPINVMDVPGFVEGYFSVQDYG 227
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLA+ LD+ G +VLDAC+APGGKT +LE D++L+S++ N R I ENL RL L
Sbjct: 228 AQLASEYLDLEDGHWVLDACAAPGGKTTSILESHDVRLVSLEKNPLRALRIEENLLRLGL 287
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
+A + I + +N +++ + FDRIL D+PC+ SG+VRR+ DI W
Sbjct: 288 QAKV----------------IKEPLDNDNKWWDRQAFDRILLDVPCSASGIVRRHIDIKW 331
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIR- 299
LRR +D K ++LNN W +LK GKLL+VTCS++ EE+ + F +NHKD+IR
Sbjct: 332 LRRPSDFVNYGKSQLELLNNAWPLLKKNGKLLYVTCSVFQEENCDVIAAFCENHKDAIRG 391
Query: 300 --------LNSPGQLLPTVNKKQDYDGFFYSLFQK 326
++ Q+LP+ + +DG +Y + +K
Sbjct: 392 DIKFPEHVVSMKNQMLPS----KHHDGLYYEILEK 422
>gi|404379652|ref|ZP_10984707.1| ribosomal RNA small subunit methyltransferase B [Simonsiella
muelleri ATCC 29453]
gi|294483136|gb|EFG30823.1| ribosomal RNA small subunit methyltransferase B [Simonsiella
muelleri ATCC 29453]
Length = 421
Score = 247 bits (630), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 136/325 (41%), Positives = 194/325 (59%), Gaps = 24/325 (7%)
Query: 3 NAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPPL 62
NAILR FLR++ + K+ +N Y N PIW I +K YP W N++ +PPL
Sbjct: 118 NAILRRFLREQDGLNKACQFNDVAKY-NLPIWLIQLLKNQYPK--HWHNMVTAFQSRPPL 174
Query: 63 TLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAAQ 122
TLR+N+R Y KLL++ ++ ++ AI++ PI ++++PKF G S+QD AQ
Sbjct: 175 TLRVNRRHANSEQYFKLLQELNIQAKVLDEYAIRITEPIPVNQLPKFTEGVVSVQDFGAQ 234
Query: 123 LAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKA 182
AA LL+ ++G VLDAC+APGGKT H+LE+AD ++++D + RL + ENL RLN +A
Sbjct: 235 QAAYLLNPQAGERVLDACAAPGGKTGHILELADCDVVALDIDNKRLARVQENLSRLNFQA 294
Query: 183 TLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLR 242
TL + N ++ + FD ILAD+PCT SG ++RNPDI WLR
Sbjct: 295 TLHCA----------------PAENVHEWWDGQPFDAILADVPCTASGTMKRNPDIKWLR 338
Query: 243 RKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS 302
R D K +K +L+ LW LK GG++L TCS++ EE+ Q F+K H D+I L
Sbjct: 339 RPTDALKTAKQQEAMLDELWGTLKVGGRMLLATCSIFAEENSLQCQKFNKRHNDAI-LQE 397
Query: 303 PGQLLPTVNKKQDYDGFFYSLFQKR 327
LLP N+KQ DGF+Y+LF K+
Sbjct: 398 EKMLLP--NEKQ--DGFYYALFVKQ 418
>gi|121596181|ref|YP_988077.1| sun protein [Acidovorax sp. JS42]
gi|120608261|gb|ABM44001.1| sun protein [Acidovorax sp. JS42]
Length = 457
Score = 247 bits (630), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 124/343 (36%), Positives = 198/343 (57%), Gaps = 33/343 (9%)
Query: 2 INAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
+NA LR FLR++ + + + + WN+P WWI +++ +P+ QW+ IL + P
Sbjct: 127 VNACLRRFLRERDTLVAATQGD-EVAVWNHPAWWIQRLRRDHPD--QWQQILQANNAPAP 183
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+ LRI++ K+T Y + L+ +E +GP + L P+ + ++P F G S+QDAAA
Sbjct: 184 MVLRISKSKSTPALYQQALEAINIEAMAVGPEGLALARPVPVQQLPGFAEGVVSVQDAAA 243
Query: 122 QLAAPLL----DIRSGMYVLDACSAPGGKTCHLLEIADI-----KLISVDNNLSRLNMIS 172
Q+AAPLL D + +LDAC+APGGKT HLLE A ++ +++ + +R I
Sbjct: 244 QMAAPLLLNGLDAAQPLRLLDACAAPGGKTAHLLEWAAALRAPWRVTALEVDAARAERIH 303
Query: 173 ENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVV 232
+NL RL L A ++++D + + D ++ + + FD IL D PCT SG+V
Sbjct: 304 DNLHRLGLSAQVLVADAA------VPADWWQQASG------GELFDAILLDAPCTASGIV 351
Query: 233 RRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSK 292
RR+PD+ WLRR++D+ +L+ ++L LW +L+PGG+LL+ TCS++ E + Q F
Sbjct: 352 RRHPDVRWLRRESDVAQLAAQQSRLLAALWPLLRPGGRLLYCTCSVFRAEGDGQIAAFLA 411
Query: 293 NHKDSIRLNSPGQLLPTVNKKQD---------YDGFFYSLFQK 326
++ D+ L SPG L P K+D +DGFFY+L K
Sbjct: 412 HNTDARLLPSPGHLFPGRPDKRDGLRDNGPGEHDGFFYALLHK 454
>gi|30249919|ref|NP_841989.1| sun; rRNA methylase [Nitrosomonas europaea ATCC 19718]
gi|30180956|emb|CAD85883.1| sun; rRNA methylase [Nitrosomonas europaea ATCC 19718]
Length = 426
Score = 247 bits (630), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 127/334 (38%), Positives = 200/334 (59%), Gaps = 31/334 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR F+RK+ + ++ N + ++YP WWI++++ YP ++ IL G++ P
Sbjct: 115 LVNAVLRNFMRKRTSL-PDQIRNDDIARYSYPQWWIDKLRQQYPQDYE--AILLAGNEHP 171
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
+ LR+N+ +T++ Y +L +++ + A++L P+++ K+P F G ++QDA
Sbjct: 172 AMILRVNRLRTSVDHYQAMLDAQNIDSEWLWDTALRLSRPVAVEKLPGFSEGLVTVQDAG 231
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLN 179
AQ AAPLLD+ +GM VLDAC+APGGK+ HL E+A+ I+L +D RL + EN RL
Sbjct: 232 AQFAAPLLDVEAGMRVLDACAAPGGKSTHLAELAENIELTVLDKQEDRLARLKENFSRLK 291
Query: 180 LKA-TLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDI 238
+ L+ D + ++ + +DRILAD+PC+ SGV+ R+PDI
Sbjct: 292 IAGYQLVCGDAMSPS----------------HWWDGQLYDRILADVPCSASGVISRHPDI 335
Query: 239 PWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSI 298
WLRR DI ++ ILN LW +L+ GGKLL+VTCS++ EE++ A F H+D+
Sbjct: 336 KWLRRPEDIDHFAQTQTAILNGLWPLLQRGGKLLYVTCSVFNEENDAVADKFLTTHEDAS 395
Query: 299 RLNSP------GQLLPTVNKKQDYDGFFYSLFQK 326
RL GQLLP + +DGFFY+LF+K
Sbjct: 396 RLPCSHGMLGRGQLLPGSH----HDGFFYALFRK 425
>gi|222112408|ref|YP_002554672.1| sun protein [Acidovorax ebreus TPSY]
gi|221731852|gb|ACM34672.1| sun protein [Acidovorax ebreus TPSY]
Length = 457
Score = 246 bits (629), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 124/343 (36%), Positives = 198/343 (57%), Gaps = 33/343 (9%)
Query: 2 INAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
+NA LR FLR++ + + + + WN+P WWI +++ +P+ QW+ IL + P
Sbjct: 127 VNACLRRFLRERDTLVAATQGD-EVAVWNHPTWWIQRLRRDHPD--QWQQILQANNAPAP 183
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+ LRI++ K+T Y + L+ +E +GP + L P+ + ++P F G S+QDAAA
Sbjct: 184 MVLRISKSKSTPALYQQALEAINIEAMAVGPEGLALARPVPVQQLPGFAEGVVSVQDAAA 243
Query: 122 QLAAPLL----DIRSGMYVLDACSAPGGKTCHLLEIADI-----KLISVDNNLSRLNMIS 172
Q+AAPLL D + +LDAC+APGGKT HLLE A ++ +++ + +R I
Sbjct: 244 QMAAPLLLNGLDAAQPLRLLDACAAPGGKTAHLLEWAAALRAPWRVTALEVDAARAERIH 303
Query: 173 ENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVV 232
+NL RL L A ++++D + + D ++ + + FD IL D PCT SG+V
Sbjct: 304 DNLHRLGLSAQVLVADAA------VPADWWQQASG------GEPFDAILLDAPCTASGIV 351
Query: 233 RRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSK 292
RR+PD+ WLRR++D+ +L+ ++L LW +L+PGG+LL+ TCS++ E + Q F
Sbjct: 352 RRHPDVRWLRRESDVAQLAAQQSRLLAALWPLLRPGGRLLYCTCSVFRAEGDVQIAAFLA 411
Query: 293 NHKDSIRLNSPGQLLPTVNKKQD---------YDGFFYSLFQK 326
++ D+ L SPG L P K+D +DGFFY+L K
Sbjct: 412 HNTDARLLPSPGHLFPGSPDKRDGLRDNGPGEHDGFFYALLHK 454
>gi|82701526|ref|YP_411092.1| sun protein [Nitrosospira multiformis ATCC 25196]
gi|82409591|gb|ABB73700.1| sun protein [Nitrosospira multiformis ATCC 25196]
Length = 442
Score = 246 bits (629), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 137/336 (40%), Positives = 206/336 (61%), Gaps = 32/336 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NAILR FLRK+ + + K +++P WWI++++ YP+ +Q +L+ + +P
Sbjct: 128 LVNAILRNFLRKRPALLE-KTAATEVGRYSHPQWWIDKLRAQYPSRYQ--AVLETANIRP 184
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTII----GPLAIKLHTPISISKIPKFFNGFCSI 116
P+ LR+NQR+T + +Y KLL +GL A++L P+ + K+P F G S+
Sbjct: 185 PMALRVNQRRTNVEAYQKLLHNAGLNARRPENEWTEEALELFHPVPVEKLPGFGQGLVSV 244
Query: 117 QDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLK 176
QD AAQ+AAPLL +SGM VLDAC+APGGK+ HLLE+ D++L +VDN+ RL + +N
Sbjct: 245 QDVAAQMAAPLLCPQSGMRVLDACAAPGGKSAHLLELTDLELTAVDNDGERLERLKQNFT 304
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL LK Y I+ + ++ + FDRILAD PC+ SGVVRR+P
Sbjct: 305 RLGLKP---------------YRIIHGDATHPGEWWDGRPFDRILADAPCSASGVVRRHP 349
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLRR++D+ + ++ K L+ LW+ L GGKLL+VTCS++ EE+ Q F +H D
Sbjct: 350 DIKWLRRESDLAQFAEIQRKTLDALWQTLVKGGKLLYVTCSIFAEENGLQVESFLNHHPD 409
Query: 297 S--IRLNSP----GQLLPTVNKKQDYDGFFYSLFQK 326
+ + + P GQLLP ++ +DGFFY+L +K
Sbjct: 410 ARLLPFSVPEIVEGQLLPDLH----HDGFFYALLEK 441
>gi|351733136|ref|ZP_08950827.1| 16S rRNA methyltransferase B [Acidovorax radicis N35]
Length = 351
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 126/345 (36%), Positives = 199/345 (57%), Gaps = 32/345 (9%)
Query: 2 INAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
+N LR FLR++ + ++ + WN+P+WWI +++ +P W+ IL + P
Sbjct: 22 LNGCLRRFLRER-DALVARTDGDPLARWNHPVWWIERLRKDHPG--HWEQILQANNAHAP 78
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+TLR+N +K++ Y K L LE G + L P+ + +P F G+ S+QDAAA
Sbjct: 79 MTLRVNVQKSSPALYQKALAAINLEAERSGDAGLVLAHPVPVQSLPGFDQGWVSVQDAAA 138
Query: 122 QLAAPLL----DIRSGMYVLDACSAPGGKTCHLLEIAD----IKLISVDNNLSRLNMISE 173
Q+AAPLL D+ + VLDAC+APGGKT HLLE+A +++I+++ + +R I E
Sbjct: 139 QMAAPLLLQGLDLTQPLRVLDACAAPGGKTAHLLELAGADAPMQVIALEIDSTRSARIGE 198
Query: 174 NLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVR 233
L+RL L+A ++++D ++ + + FD IL D PCT SG+VR
Sbjct: 199 TLQRLGLRAQVVVADAAR------------PQDWWQQHCDGALFDAILLDAPCTASGIVR 246
Query: 234 RNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKN 293
R+PD+ WLRR++DI +L+ ++L LW +L+PGG+LL+ TCS++ E + Q F +
Sbjct: 247 RHPDVRWLRRESDIAQLATLQARLLKTLWPLLRPGGRLLYCTCSVFRAEGDAQVQTFLAH 306
Query: 294 HKDSIRLNSPGQLLP---------TVNKKQDYDGFFYSLFQKRKE 329
+ D+ L SPG L+P N+ D+DGFFY+L QK +
Sbjct: 307 NTDAQLLPSPGHLIPGNGDKPGAVPDNQPGDHDGFFYALLQKSPQ 351
>gi|302877269|ref|YP_003845833.1| sun protein [Gallionella capsiferriformans ES-2]
gi|302580058|gb|ADL54069.1| sun protein [Gallionella capsiferriformans ES-2]
Length = 421
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 128/329 (38%), Positives = 201/329 (61%), Gaps = 26/329 (7%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NAILR FLR + ++ E ++++P WWI++++ Y + IL G+ P
Sbjct: 114 LVNAILRNFLRNQADLLTQAALK-DEGHYSHPQWWIDELRAQYGDAA--DAILIAGNGHP 170
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
P+TLR+N ++ + Y L + +IG A++L P+S+ K+P FF+G S+QDA
Sbjct: 171 PMTLRVNAQRGSTPDYLAQLAAQDIPARLIGAEALQLEKPVSVDKLPGFFDGLVSVQDAG 230
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQ AA LLD ++GM VLDAC+APGGKT H+LE AD++L+++D + +RL+ + ENL+RL L
Sbjct: 231 AQYAARLLDAKAGMRVLDACAAPGGKTAHILERADVELLALDKDAARLSRVKENLQRLTL 290
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A L+ D + + ++ + F+RILAD+PC+ +GVVRR+PDI W
Sbjct: 291 NAALLTGDAASPS----------------DWWDGRLFERILADVPCSATGVVRRHPDIKW 334
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRRK D+ ++ +ILN LW +L PGG LL+ TCS++ +E+++ F + +
Sbjct: 335 LRRKKDLASFAEQQFEILNALWPLLAPGGLLLYATCSVFKQENQQVVDKFLAQTPAAQQR 394
Query: 301 NS---PGQLLPTVNKKQDYDGFFYSLFQK 326
++ G LLP ++DGFFY+L QK
Sbjct: 395 DTGLPGGMLLP----DDEHDGFFYALLQK 419
>gi|392547674|ref|ZP_10294811.1| 16S rRNA methyltransferase [Pseudoalteromonas rubra ATCC 29570]
Length = 427
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 126/338 (37%), Positives = 198/338 (58%), Gaps = 35/338 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR F R + + ++ I +N+P W+I +++ YP QW+ IL ++
Sbjct: 114 LINAVLRNFQRAQ-DTLEASANAIPVCKYNHPGWFIKKLQAAYPE--QWEAILTANQQQA 170
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLA--IKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+NQR++T Y + L G+ T+ A I L P+ + ++P F G S+QD
Sbjct: 171 PMWLRVNQRQSTTADYAERLDAQGIAHTLDADFADGILLTKPVDVQQLPAFAQGASSVQD 230
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRL 178
AAAQ+AA LL + G ++LDAC+APGGKTCH+LE+AD +I++D + RL + ENL+RL
Sbjct: 231 AAAQMAARLLAPQDGEHILDACAAPGGKTCHILELADANVIALDADGERLKRVDENLQRL 290
Query: 179 NLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDI 238
+L A + +D + + +++ + FDRIL D+PC+ +GV+RR+PDI
Sbjct: 291 HLSAQCLEADAATPDA----------------WWQGEQFDRILLDVPCSATGVIRRHPDI 334
Query: 239 PWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSI 298
WLRR DI +L+ +IL+ +W +LKPGG L++ TCS+ +E+ EQ F D+
Sbjct: 335 KWLRRATDIDELATLQARILDAIWPLLKPGGTLVYATCSVLPQENAEQVAAFLSRTADAQ 394
Query: 299 RL--------NSPG-QLLPTVNKKQDYDGFFYSLFQKR 327
++PG QLLP DGF+Y+ +K+
Sbjct: 395 LTPLHERDTPDAPGLQLLPG-----HTDGFYYARLEKQ 427
>gi|451936720|ref|YP_007460574.1| ribosomal RNA small subunit methyltransferase B [Candidatus
Kinetoplastibacterium oncopeltii TCC290E]
gi|451777643|gb|AGF48618.1| ribosomal RNA small subunit methyltransferase B [Candidatus
Kinetoplastibacterium oncopeltii TCC290E]
Length = 450
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 130/335 (38%), Positives = 200/335 (59%), Gaps = 27/335 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA LR FLRK+ + + K+ + HE+ WNY WWIN ++ Y + WK IL +
Sbjct: 134 LLNAGLRNFLRKR-SLLEDKIADKHEACWNYQHWWINSLRNVYGS--SWKIILSSSNSPA 190
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPIS--ISKIPKFFNGFCSIQD 118
PL +R+N ++ + + + ++ G I + I I + F G+ +QD
Sbjct: 191 PLAIRVNSKQMDRDNLVNIFLDNDIDCCSFGDSGIIVKKKIQSKIDNLIGFSEGWWCVQD 250
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRL 178
A AQL +L + GM VLDAC+APGGK HLLE+A+IKL+++D + +RLN + NL+RL
Sbjct: 251 AGAQLVGQILGVEDGMTVLDACAAPGGKASHLLELANIKLLALDCDETRLNRMKNNLERL 310
Query: 179 NL---KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRN 235
L L+L+D + + +++ K FD +LAD+PC+ SG+VR++
Sbjct: 311 KLYSNNVDLMLADAADTD----------------KWWDGKLFDAVLADVPCSASGIVRKH 354
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLR+++DI+K KI++ LW + PGGKLL+VTCS+++EE QA+ F H
Sbjct: 355 PDIRWLRKESDIQKFVLRQIKIVDALWNTVAPGGKLLYVTCSIFYEEGIGQALAFLDRHS 414
Query: 296 DSIRLNSPGQLLPTVNKKQDY---DGFFYSLFQKR 327
D+I L+SP Q+LP + DY DGFF++LF+K+
Sbjct: 415 DAIFLDSPSQILPIDDNNGDYVSHDGFFFALFKKK 449
>gi|359442177|ref|ZP_09232051.1| ribosomal RNA small subunit methyltransferase B [Pseudoalteromonas
sp. BSi20429]
gi|392535951|ref|ZP_10283088.1| 16S rRNA methyltransferase [Pseudoalteromonas arctica A 37-1-2]
gi|358035960|dbj|GAA68300.1| ribosomal RNA small subunit methyltransferase B [Pseudoalteromonas
sp. BSi20429]
Length = 431
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 130/338 (38%), Positives = 206/338 (60%), Gaps = 35/338 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INAILR F R++ E+ + K I +N+P W+I QV+ YP+ W+ +L+ ++
Sbjct: 117 LINAILRSFQRQQAEL-EEKAKLIPVCLYNHPNWFIKQVQTAYPD--SWEALLEENQQQA 173
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+NQ + + Y+++L + +E T+ IKL P + +P+F G CS+QD
Sbjct: 174 PMWLRVNQAQFSTQEYSEMLSANDIEHTLNPDFIDGIKLAKPRDVFSLPEFDTGACSVQD 233
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRL 178
AAAQLAA L+ ++ Y+LDAC+APGGKTCH+LE+AD ++++D++ +RL + +NL R+
Sbjct: 234 AAAQLAARFLEPKADDYILDACAAPGGKTCHILELADADVLALDSDSTRLERVKQNLTRI 293
Query: 179 NLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDI 238
L A L D S+ + ++ K FDRIL D+PC+ +GV+RR+PDI
Sbjct: 294 GLGADLQCGDASQPH----------------TWWDEKLFDRILLDVPCSATGVIRRHPDI 337
Query: 239 PWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD-- 296
WLRR +DI+ LSK IL+++W +LKPGG L++ TCS+ +E+++Q F N+ D
Sbjct: 338 KWLRRASDIEDLSKLQNDILDSIWPLLKPGGTLVYATCSVLPQENQQQVAKFLANNDDVE 397
Query: 297 ------SIRLNSPG-QLLPTVNKKQDYDGFFYSLFQKR 327
+ + +PG QLLP + DGF+Y+ K+
Sbjct: 398 HIPLHENDTVTTPGLQLLPG-----ESDGFYYAKLVKK 430
>gi|332533679|ref|ZP_08409538.1| ribosomal RNA small subunit methyltransferase B [Pseudoalteromonas
haloplanktis ANT/505]
gi|332036843|gb|EGI73304.1| ribosomal RNA small subunit methyltransferase B [Pseudoalteromonas
haloplanktis ANT/505]
Length = 431
Score = 244 bits (623), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 129/338 (38%), Positives = 205/338 (60%), Gaps = 35/338 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INAILR F R++ E+ + K I +N+P W+I QV+ YP+ W+ +L+ ++
Sbjct: 117 LINAILRSFQRQQAEL-EEKAKLIPVCLYNHPNWFIKQVQTAYPD--SWEALLEENQQQA 173
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+NQ + + Y+ +L + +E T+ IKL P + +P+F G CS+QD
Sbjct: 174 PMWLRVNQAQFSTQEYSDMLSANDIEHTLNPDFIDGIKLAKPRDVFSLPEFDTGACSVQD 233
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRL 178
AAAQLAA L+ ++ Y+LDAC+APGGKTCH+LE+AD ++++D++ +RL + +NL R+
Sbjct: 234 AAAQLAARFLEPKADDYILDACAAPGGKTCHILELADADVLALDSDSTRLERVKQNLTRI 293
Query: 179 NLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDI 238
L A L D S+ + ++ K FDRIL D+PC+ +GV+RR+PDI
Sbjct: 294 GLGADLQCGDASQPH----------------TWWDEKLFDRILLDVPCSATGVIRRHPDI 337
Query: 239 PWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD-- 296
WLRR +DI+ L+K IL+++W +LKPGG L++ TCS+ +E+++Q F N+ D
Sbjct: 338 KWLRRASDIEDLAKLQSDILDSIWPLLKPGGTLVYATCSVLPQENQQQVAKFLANNDDVE 397
Query: 297 ------SIRLNSPG-QLLPTVNKKQDYDGFFYSLFQKR 327
+ + +PG QLLP + DGF+Y+ K+
Sbjct: 398 HIPLHENDTVTTPGLQLLPG-----ESDGFYYAKLVKK 430
>gi|388566081|ref|ZP_10152557.1| sun protein [Hydrogenophaga sp. PBC]
gi|388266711|gb|EIK92225.1| sun protein [Hydrogenophaga sp. PBC]
Length = 443
Score = 244 bits (622), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 121/338 (35%), Positives = 195/338 (57%), Gaps = 32/338 (9%)
Query: 2 INAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
+NA LR +LR+ + ++++ + WN+P+WWI +++ +P +W+ IL ++ P
Sbjct: 121 LNACLRRYLREA-DALEAQVSGDPLAQWNHPLWWIERLRRDHPE--RWEAILQANNRPGP 177
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+TLR+N+R+T + + L G+ + +G ++L P+ + +IP F +G CS+QD AA
Sbjct: 178 MTLRVNRRRTDREALAQALAAQGVASHPVGDDGLELARPLPVEQIPGFADGSCSVQDEAA 237
Query: 122 QLAAPL-LDIRSGMY---VLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKR 177
Q+AAPL LD G +LDAC+APGGKT HLLE D L+++D + R I++NL R
Sbjct: 238 QMAAPLMLDGLPGATRPRLLDACAAPGGKTAHLLERVDADLLALDVDAQRCTRIADNLHR 297
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L A + +D ++ ++ + FD IL D PCT SG+VRR+PD
Sbjct: 298 LRLAAEVRCADAARPA----------------DWWDGRPFDAILLDAPCTASGIVRRHPD 341
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
+ WLRR +D+ L++ +L+ LW +++PGG+L++ TCS++ E +QA F + H D+
Sbjct: 342 VRWLRRDSDVDALARTQRALLDALWPLVRPGGRLVYATCSVFRAEGSDQAAAFLQRHTDA 401
Query: 298 IRLNSPGQLLPTV---------NKKQDYDGFFYSLFQK 326
+PG L P N+ DGFFY+ F K
Sbjct: 402 RTAPAPGHLFPGTPGGAGQFNDNRPGGPDGFFYARFDK 439
>gi|114330411|ref|YP_746633.1| sun protein [Nitrosomonas eutropha C91]
gi|114307425|gb|ABI58668.1| sun protein [Nitrosomonas eutropha C91]
Length = 426
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 131/333 (39%), Positives = 194/333 (58%), Gaps = 29/333 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR F+R++ + N + ++YP WWI++++ YP +K IL G++ P
Sbjct: 115 LINAVLRNFMRQRTLLLDQIKSN-EVARYSYPQWWIDKLRQQYPQ--DYKAILLAGNEHP 171
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
+ LRIN +T++ Y +L G+ + +G A++L P+S+ K+P F G ++QDA
Sbjct: 172 AMILRINSLRTSVNHYQAMLDAQGIGSEWLGGSALQLIRPVSVEKLPGFSEGLVTVQDAG 231
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLN 179
AQ AAPLLD+++GM VLDAC+APGGK+ HL E+ + IKL +D RL ++EN RL
Sbjct: 232 AQFAAPLLDVKAGMRVLDACAAPGGKSTHLAELTENIKLTVLDKYEDRLTRLTENFSRLQ 291
Query: 180 LKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIP 239
+ Y I N +++ + +DRILAD+PC+ SGVV R+PDI
Sbjct: 292 ITD---------------YQLICGDAMNPSQWWNGQLYDRILADVPCSASGVVNRHPDIK 336
Query: 240 WLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIR 299
WLRR D ++ ILN LW +L+ GGKLL+ TCS++ EE+ F H+D+ R
Sbjct: 337 WLRRPGDTDNFAQIQTTILNELWPLLRHGGKLLYATCSVFNEENNLITEKFLSIHQDASR 396
Query: 300 LNSP------GQLLPTVNKKQDYDGFFYSLFQK 326
L GQLLP + +DGFFY+L QK
Sbjct: 397 LPCSHEEINNGQLLPGPH----HDGFFYALLQK 425
>gi|392543420|ref|ZP_10290557.1| 16S rRNA methyltransferase [Pseudoalteromonas piscicida JCM 20779]
Length = 427
Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 126/338 (37%), Positives = 197/338 (58%), Gaps = 35/338 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NAILR F R + E+ ++ I +N+P W+INQ+K YP QW+ IL+ ++
Sbjct: 114 LVNAILRSFQRHQVEL-ETSAAEIPACLYNHPGWFINQLKAAYPT--QWQAILEANQQQA 170
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+NQ + + Y LL + G+ + P I L +PI + +P+F G CS+QD
Sbjct: 171 PMWLRVNQSQFSTADYAALLDQEGVAYQLHSEYPDGILLDSPIDVYALPQFAAGACSVQD 230
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRL 178
AAAQ AA LL ++G +LDAC+APGGKTCH+LE+AD K+ ++D + RL + +NL+R+
Sbjct: 231 AAAQKAARLLAPQAGENILDACAAPGGKTCHILELADAKVTAIDADSDRLQRVEQNLERI 290
Query: 179 NLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDI 238
L A + D S + ++ + +DRIL D+PC+ +GV+RR+PDI
Sbjct: 291 GLSAKCLEGDAS----------------DPEAWWDGEQYDRILLDVPCSATGVIRRHPDI 334
Query: 239 PWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSI 298
WLRR +DI L +I++ +W +LKPGG L++ TCS+ +E+++Q F D+
Sbjct: 335 KWLRRASDIDNLVTLQAQIIDKIWPLLKPGGTLVYATCSVLPQENQQQIARFLSVTPDAT 394
Query: 299 RL--------NSPG-QLLPTVNKKQDYDGFFYSLFQKR 327
+ PG QLLP ++ DGF+Y+ K+
Sbjct: 395 LIPLHDADTQTQPGLQLLPGLS-----DGFYYAKLTKQ 427
>gi|451813212|ref|YP_007449665.1| ribosomal RNA small subunit methyltransferase B [Candidatus
Kinetoplastibacterium blastocrithidii TCC012E]
gi|451779181|gb|AGF50061.1| ribosomal RNA small subunit methyltransferase B [Candidatus
Kinetoplastibacterium blastocrithidii TCC012E]
Length = 450
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 131/335 (39%), Positives = 203/335 (60%), Gaps = 27/335 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA LR FLRK+ + ++ + + E+ WNY WWIN ++ Y + WK IL
Sbjct: 134 LLNAGLRSFLRKRF-LLENLVADDLEACWNYQYWWINNLRRAYCD--SWKVILSSADSPA 190
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHT--PISISKIPKFFNGFCSIQD 118
PL +R+N R+ S + +G++ G I L I ++ F G+ IQD
Sbjct: 191 PLAIRVNSRQIDRDSMLGIFLDNGVDCCGFGDSGIILQNKKQSKIDELVGFSEGWWCIQD 250
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRL 178
A AQLA +L + +GM VLDACSAPGGK HLLE+A+I L+++D + RLN + +NL+RL
Sbjct: 251 AGAQLAGHILGVENGMSVLDACSAPGGKASHLLELANINLLALDCDEIRLNRMKQNLERL 310
Query: 179 NLKAT---LILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRN 235
L + L+L+D +D++K ++ + FD +LAD+PC+ SG+VR++
Sbjct: 311 RLYSDNVRLMLADA---------VDLDK-------WWDGQLFDAVLADVPCSASGIVRKH 354
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLR+++DI+K KI++ LW + PGG+LL+VTCS+++EE QA+ F H
Sbjct: 355 PDIRWLRKESDIRKFVLKQIKIIDALWNTVAPGGRLLYVTCSIFYEECIGQALSFLDRHN 414
Query: 296 DSIRLNSPGQLLPTVNKKQD---YDGFFYSLFQKR 327
D+I ++SP Q+LP + D +DGFF++LF+K+
Sbjct: 415 DAIFIDSPAQILPVTSDNGDCISHDGFFFALFEKK 449
>gi|358639579|dbj|BAL26876.1| putative tRNA and rRNA cytosine-C5-methylase [Azoarcus sp. KH32C]
Length = 426
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 117/326 (35%), Positives = 189/326 (57%), Gaps = 19/326 (5%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR LR + + + ++ Y +P WWI +++ ++P+ W+ L G+ P
Sbjct: 118 VINGVLRNCLRNRDALAATVESDLAARY-RHPAWWIKRLQHSFPD--HWEAALAGGNMHP 174
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
P+ LR+N+++ + L+ +GL + A+ L TP++++ +P F G S+QDA
Sbjct: 175 PMALRVNRQRADIPGTVAALRAAGLSVRELDNGALVLDTPVAVTALPGFAEGRLSVQDAG 234
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQ AA L + +G VLDAC+APGGK+ H+LE+A + L++++ + R I +NL RL L
Sbjct: 235 AQWAARWLGLETGQRVLDACAAPGGKSAHILEMAPVDLVALELDPVRTQRIRDNLARLGL 294
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
AT+ +D N ++ + FDRILAD+PC+ SGV RR+PDI W
Sbjct: 295 AATVRTAD----------------CRNVAAWWGGRPFDRILADVPCSASGVARRHPDIKW 338
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR DI++ + +IL+ LW L PGG++L+VTCS++ +E+ Q F H D+ R+
Sbjct: 339 LRRPEDIRRFAAQQAEILDALWPTLAPGGRMLYVTCSVFDDENARQIAAFCARHNDARRI 398
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQK 326
+ GQ D+DGF+Y+L +K
Sbjct: 399 DIDGQPDRQFLPDADHDGFYYALVEK 424
>gi|163859032|ref|YP_001633330.1| hypothetical protein Bpet4711 [Bordetella petrii DSM 12804]
gi|163262760|emb|CAP45063.1| conserved hypothetical protein [Bordetella petrii]
Length = 452
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 130/330 (39%), Positives = 204/330 (61%), Gaps = 19/330 (5%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA LR FLR++ + ++ + + E+ WN+P WW++Q+ YP+ QW+ IL + P
Sbjct: 138 LLNASLRRFLRERAAL-EAAVAKLPEARWNHPAWWVDQLGAAYPD--QWQAILAAANVPP 194
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N R+ ++ + L+ G+ + +G + L ++++P F G+ S+QDAA
Sbjct: 195 PLTLRVNTRRASVEQVRQALQADGIASEPVGAAGLVLAEARPVAQLPGFAAGWWSVQDAA 254
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAAPLL R G VLDAC+APGGKT HLLE+A++ L+++D + +RL + +NL RL L
Sbjct: 255 AQLAAPLLAPRDGQRVLDACAAPGGKTAHLLELANLDLLALDADAARLARVEQNLDRLGL 314
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
++ + + + + + FD +LAD+PCT SG+VRR+PDI W
Sbjct: 315 RSDRVALAAADAADLDAW-------------WDGRPFDAVLADVPCTASGIVRRHPDIRW 361
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR D+ + + +I + LW+ + PGG+LL+VTCS++ E QA F++ H D+ RL
Sbjct: 362 LRRAPDVARTAALQARIADALWRTVAPGGRLLYVTCSVFPAEGARQAEAFARRHADAQRL 421
Query: 301 NSPGQLLPT---VNKKQDYDGFFYSLFQKR 327
+PGQLLP + +DGFFY+LF K+
Sbjct: 422 EAPGQLLPVAVGATPQAQHDGFFYALFAKQ 451
>gi|437999591|ref|YP_007183324.1| 16S rRNA (cytosine967-C5)-methyltransferase [Candidatus
Kinetoplastibacterium blastocrithidii (ex Strigomonas
culicis)]
gi|429338825|gb|AFZ83247.1| 16S rRNA (cytosine967-C5)-methyltransferase [Candidatus
Kinetoplastibacterium blastocrithidii (ex Strigomonas
culicis)]
Length = 393
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 131/335 (39%), Positives = 203/335 (60%), Gaps = 27/335 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA LR FLRK+ + ++ + + E+ WNY WWIN ++ Y + WK IL
Sbjct: 77 LLNAGLRSFLRKR-FLLENLVADDLEACWNYQYWWINNLRRAYCD--SWKVILSSADSPA 133
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHT--PISISKIPKFFNGFCSIQD 118
PL +R+N R+ S + +G++ G I L I ++ F G+ IQD
Sbjct: 134 PLAIRVNSRQIDRDSMLGIFLDNGVDCCGFGDSGIILQNKKQSKIDELVGFSEGWWCIQD 193
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRL 178
A AQLA +L + +GM VLDACSAPGGK HLLE+A+I L+++D + RLN + +NL+RL
Sbjct: 194 AGAQLAGHILGVENGMSVLDACSAPGGKASHLLELANINLLALDCDEIRLNRMKQNLERL 253
Query: 179 NLKAT---LILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRN 235
L + L+L+D +D++K ++ + FD +LAD+PC+ SG+VR++
Sbjct: 254 RLYSDNVRLMLADA---------VDLDK-------WWDGQLFDAVLADVPCSASGIVRKH 297
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLR+++DI+K KI++ LW + PGG+LL+VTCS+++EE QA+ F H
Sbjct: 298 PDIRWLRKESDIRKFVLKQIKIIDALWNTVAPGGRLLYVTCSIFYEECIGQALSFLDRHN 357
Query: 296 DSIRLNSPGQLLPTVNKKQD---YDGFFYSLFQKR 327
D+I ++SP Q+LP + D +DGFF++LF+K+
Sbjct: 358 DAIFIDSPAQILPVTSDNGDCISHDGFFFALFEKK 392
>gi|225024416|ref|ZP_03713608.1| hypothetical protein EIKCOROL_01291 [Eikenella corrodens ATCC
23834]
gi|224942797|gb|EEG24006.1| hypothetical protein EIKCOROL_01291 [Eikenella corrodens ATCC
23834]
Length = 419
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 127/326 (38%), Positives = 185/326 (56%), Gaps = 24/326 (7%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+ NA+LR FLR++ + + + E +N P WW+ +++ YP W I + + P
Sbjct: 116 LTNALLRRFLRERDSLMQQAQQSP-EGRYNLPNWWLERLQRDYPE--HWLQITEAFNSHP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
P+TLRIN+R T Y K+L + G++ I+G A+ L TP+ +S +P F G S+QD
Sbjct: 173 PMTLRINRRHTDAEGYLKILDEHGMQAEILGSHAVMLATPVPVSALPLFAEGVVSVQDWG 232
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQ AA L++++G VLDAC+APGGK+ HLLE AD L ++D + +RL + +NL RLNL
Sbjct: 233 AQQAAAWLNVQNGERVLDACAAPGGKSGHLLEWADCTLTAIDIDPTRLQQVRDNLSRLNL 292
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A L +D + Y F+ +LAD+PCT SGV R+PDI W
Sbjct: 293 SAELHAADARQW----------------ASCYDGLLFNAVLADVPCTASGVACRHPDIKW 336
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR D K + +L+ LW+ LKPGG++L TCSL+ EE+ Q F + H D+
Sbjct: 337 LRRPQDAKNTAAQQTDLLDALWRTLKPGGRMLLSTCSLFTEENGSQLQAFLQRHPDAACT 396
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQK 326
S LLP ++ DGF+Y+L K
Sbjct: 397 RSE-TLLPNPHQ----DGFYYALIHK 417
>gi|296137329|ref|YP_003644571.1| sun protein [Thiomonas intermedia K12]
gi|295797451|gb|ADG32241.1| sun protein [Thiomonas intermedia K12]
Length = 457
Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 133/339 (39%), Positives = 194/339 (57%), Gaps = 34/339 (10%)
Query: 3 NAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPPL 62
NA+LR F+ + +I +M + E+ WN+P WW+ ++ YP W+ +L+V ++P +
Sbjct: 136 NALLRRFVSRTADIEAVRMRTL-EARWNHPDWWVQALQSAYPA--DWQGVLEVAQRQPAM 192
Query: 63 TLRINQRKTTLISYNKLLKKSGLETTIIG-PL---AIKLHTPISISKIPKFFNGFCSIQD 118
TLR+N R + +Y L GL T PL A+ L +++ ++P F G+ S+QD
Sbjct: 193 TLRVNPRLQSRTAYQAALAACGLPCTAPDDPLLDQALILKQAVAVERLPGFERGWVSVQD 252
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRL 178
AAAQ AA LLD++ G VLDAC+APGGKT HLLE D L+++D + RL + + L RL
Sbjct: 253 AAAQYAAALLDVQPGQRVLDACAAPGGKTAHLLERCDCDLLALDKDAQRLRRVEDTLDRL 312
Query: 179 NLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDI 238
L+A + +D + + ++ + FDRIL D PC+ SG+ RR+PDI
Sbjct: 313 GLQARTLAADAA----------------HPATWWDGQPFDRILLDAPCSASGIARRHPDI 356
Query: 239 PWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSI 298
WLRR DI L+ +L+ LW +L+PGGKLL+VTCS++ +E EQA F H D+I
Sbjct: 357 RWLRRAADIPALAATQAVLLDALWPLLRPGGKLLYVTCSVFPQEGVEQARAFLARHADAI 416
Query: 299 RLNSPGQLLPTV-----------NKKQDYDGFFYSLFQK 326
+PGQLLP + DGFFY+LF K
Sbjct: 417 ASPAPGQLLPQEPAFDQTRDDPGAARHSQDGFFYALFTK 455
>gi|121606520|ref|YP_983849.1| sun protein [Polaromonas naphthalenivorans CJ2]
gi|120595489|gb|ABM38928.1| sun protein [Polaromonas naphthalenivorans CJ2]
Length = 450
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 127/350 (36%), Positives = 194/350 (55%), Gaps = 48/350 (13%)
Query: 2 INAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
IN LR FLR++GE+ + ++ WN+P WWI++VK +P QW++IL + + P
Sbjct: 125 INGCLRRFLREQGELM-ALTEKSPQAVWNHPQWWIDRVKKDHPA--QWQDILRANNSRAP 181
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDA-- 119
L LRIN+RKTT Y L + +G + L ++ +P F G S+QDA
Sbjct: 182 LILRINERKTTPAQYLHALLAMDIGAFPVGEHGVVLTEARPVTSLPGFAEGHFSVQDAAA 241
Query: 120 ------------AAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSR 167
AA +P L I LDAC+APGGKT HLLE+AD + ++D + R
Sbjct: 242 QLAAPLLLDGLMAAGEGSPRLRI------LDACAAPGGKTAHLLELADCDVTALDIDARR 295
Query: 168 LNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCT 227
I++NL+RL L+A +++ D + ++ + +D IL D PCT
Sbjct: 296 CERIAQNLQRLGLRAHIVVGDAGRPG----------------DWWDGRLYDGILLDAPCT 339
Query: 228 GSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQA 287
SG+VRR+PD+ WLRR DI +L++ ++L LW +L+PGG+L++ TCS++ E E+Q
Sbjct: 340 ASGIVRRHPDVRWLRRPTDIAQLAQIQARLLATLWPLLQPGGRLVYCTCSVFRAEGEQQV 399
Query: 288 IIFSKNHKDSIRLNSPGQLLPTV---------NKKQDYDGFFYSLFQKRK 328
F+ H D++ L SPG LLP N +++DGF+Y+L +KR+
Sbjct: 400 QAFAARHTDALLLPSPGHLLPQGGAGAAVFPDNLMREHDGFYYALLEKRR 449
>gi|334132229|ref|ZP_08505990.1| Putative 16S rRNA methyltransferase B [Methyloversatilis
universalis FAM5]
gi|333442875|gb|EGK70841.1| Putative 16S rRNA methyltransferase B [Methyloversatilis
universalis FAM5]
Length = 416
Score = 241 bits (614), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 121/333 (36%), Positives = 192/333 (57%), Gaps = 27/333 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ ++ + + +P WW+++++ +P+ W I G+ P
Sbjct: 105 LMNAVLRNAQRRH-AELEAAVAADEAARLQHPAWWLDRLRADHPD--DWAGIAAQGNSHP 161
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
P+ LR+N+R++T+ + L +G+ G + L P +S++P F G S+QD
Sbjct: 162 PMALRVNRRRSTVDAAAAALAAAGIGAQAHGTTGLLLDKPCPVSRLPGFAEGVLSVQDLG 221
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQ AA LLD+ +G VLDAC+APGGK CHLLE AD+ L+++D++ +R I++N RL L
Sbjct: 222 AQGAAALLDVAAGQRVLDACAAPGGKACHLLEAADVDLLALDHSEARAQRIADNFARLGL 281
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
+ + D ++ + ++ + FDRILAD+PC+ SGVVRR+PD W
Sbjct: 282 PGRIAVGDAARPD----------------DWWDGRPFDRILADVPCSASGVVRRHPDAKW 325
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR DI + + IL+ LW++L PGGKLL+ TCS++ E+++Q F+ H D RL
Sbjct: 326 LRRPKDIAQFASQQRAILDALWRVLAPGGKLLYATCSVFRAENQDQVAAFAARHPDCRRL 385
Query: 301 NSPG----QLLPTVNKKQDYDGFFYSLFQKRKE 329
G LLPT ++DGF+Y+L QK +
Sbjct: 386 TLSGAPDLSLLPTA----EHDGFYYALLQKAAD 414
>gi|409204029|ref|ZP_11232229.1| 16S rRNA methyltransferase [Pseudoalteromonas flavipulchra JG1]
Length = 427
Score = 240 bits (613), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 126/337 (37%), Positives = 196/337 (58%), Gaps = 35/337 (10%)
Query: 2 INAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
+NAILR F R + E+ ++ I +N+P W+INQ+K YP QW+ IL+ ++ P
Sbjct: 115 VNAILRSFQRHQVEL-ETSAAEIPACLYNHPGWFINQLKAAYPT--QWQAILEANQQQAP 171
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQDA 119
+ LR+NQ + + Y LL + G+ + P I L +PI + +P+F G CS+QDA
Sbjct: 172 MWLRVNQSQFSTADYAALLDQEGVAYQLHSEYPDGILLDSPIDVYALPQFAAGACSVQDA 231
Query: 120 AAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLN 179
AAQ AA LL ++G +LDAC+APGGKTCH+LE+AD K+ ++D + RL + +NL+R+
Sbjct: 232 AAQKAARLLAPQAGENILDACAAPGGKTCHILELADAKVTAIDADGDRLLRVEQNLERIG 291
Query: 180 LKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIP 239
L A + D S + ++ + +DRIL D+PC+ +GV+RR+PDI
Sbjct: 292 LSAKCLEGDAS----------------DPEAWWDGEQYDRILLDVPCSATGVIRRHPDIK 335
Query: 240 WLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIR 299
WLRR +DI L +I++ +W +LKPGG L++ TCS+ +E+++Q F D+
Sbjct: 336 WLRRASDIDNLVTLQAQIIDKIWPLLKPGGTLVYATCSVLPQENQQQIARFLSATPDATL 395
Query: 300 L--------NSPG-QLLPTVNKKQDYDGFFYSLFQKR 327
+ PG QLLP ++ DGF+Y+ K+
Sbjct: 396 VPLHDADTQTQPGLQLLPGLS-----DGFYYAKLTKQ 427
>gi|319778867|ref|YP_004129780.1| ribosomal RNA small subunit methyltransferase B [Taylorella
equigenitalis MCE9]
gi|317108891|gb|ADU91637.1| Ribosomal RNA small subunit methyltransferase B [Taylorella
equigenitalis MCE9]
Length = 425
Score = 240 bits (613), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 145/326 (44%), Positives = 194/326 (59%), Gaps = 24/326 (7%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA LR FLR K E+ + NI+E+ +YP WW ++K +YPN + +L+ K
Sbjct: 123 LLNACLRNFLRNKTELIRG--LNIYENL-SYPQWWYEKLKNSYPN--TYLEVLNADKKYA 177
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
P+ LRIN RK + Y KLL +E IG IKL ++I+ +P + G S+QD
Sbjct: 178 PINLRINTRKISRADYLKLLSTQNIEFEEIGESGIKLSKSVNIATLPGYDEGLFSVQDIG 237
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQ AA L I++G YVLDACSAPGGK HLLE DI L+ +D + RL + ENL RL+L
Sbjct: 238 AQNAAFQLPIKNGDYVLDACSAPGGKAAHLLERFDIDLLCMDADKERLERVKENLNRLDL 297
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
N+ L D + K ++ + FD ILAD+PCTGSGVVRR+PDI W
Sbjct: 298 LGQ---------NVHLLEGDASLKD-----WWDGRKFDAILADVPCTGSGVVRRHPDIKW 343
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LR++ D+ K + KI+ NLW MLK GG LL+VTCS++ EE E QA F+ + RL
Sbjct: 344 LRKEVDVIKTVELQRKIIINLWDMLKFGGYLLYVTCSVFKEEGELQAQYFTTKLEGIERL 403
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQK 326
S G + P KQ DGFFY+LF+K
Sbjct: 404 PSLGHIFPP---KQ--DGFFYALFKK 424
>gi|399115577|emb|CCG18380.1| ribosomal RNA small subunit methyltransferase [Taylorella
equigenitalis 14/56]
Length = 425
Score = 240 bits (612), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 145/326 (44%), Positives = 194/326 (59%), Gaps = 24/326 (7%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA LR FLR K E+ + NI+E+ +YP WW ++K +YPN + +L+ K
Sbjct: 123 LLNACLRNFLRNKTELIRG--LNIYENL-SYPQWWYEKLKNSYPN--TYLEVLNADKKYT 177
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
P+ LRIN RK + Y KLL +E IG IKL ++I+ +P + G S+QD
Sbjct: 178 PINLRINTRKISRADYLKLLSTQNIEFEEIGESGIKLSKSVNIATLPGYDEGLFSVQDIG 237
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQ AA L I++G YVLDACSAPGGK HLLE DI L+ +D + RL + ENL RL+L
Sbjct: 238 AQNAAFQLPIKNGDYVLDACSAPGGKAAHLLERFDIDLLCMDADKERLERVKENLNRLDL 297
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
N+ L D + K ++ + FD ILAD+PCTGSGVVRR+PDI W
Sbjct: 298 LGQ---------NVHLLEGDASLKD-----WWDGRKFDAILADVPCTGSGVVRRHPDIKW 343
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LR++ D+ K + KI+ NLW MLK GG LL+VTCS++ EE E QA F+ + RL
Sbjct: 344 LRKEVDVIKTVELQRKIIINLWDMLKFGGYLLYVTCSVFKEEGELQAQYFTTKLEGIERL 403
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQK 326
S G + P KQ DGFFY+LF+K
Sbjct: 404 PSLGHIFPP---KQ--DGFFYALFKK 424
>gi|392540117|ref|ZP_10287254.1| 16S rRNA methyltransferase [Pseudoalteromonas marina mano4]
Length = 431
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 130/338 (38%), Positives = 201/338 (59%), Gaps = 35/338 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INAILR F R++ E+ + K I +N+P W+I QVK YP W+ IL+ ++
Sbjct: 117 LINAILRSFQRQQAEL-EEKAKLIPVCLYNHPNWFIKQVKEAYPE--NWEAILEENQQQA 173
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+NQ + + Y+ +L + +E T+ IKL P + +P+F G CS+QD
Sbjct: 174 PMWLRVNQSQFSTQEYSDMLTANDIEHTLNPNFIDGIKLAKPRDVFSLPEFDTGACSVQD 233
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRL 178
AAAQLAA L+ + +LDAC+APGGKTCH+LE+AD ++++D++ +RL + +NL R+
Sbjct: 234 AAAQLAARFLEPKDDDVILDACAAPGGKTCHILELADADVLALDSDATRLERVKQNLTRI 293
Query: 179 NLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDI 238
L A L D S+ + ++ ++ FDRIL D+PC+ +GV+RR+PDI
Sbjct: 294 GLGADLQCGDASQPH----------------TWWDDEQFDRILLDVPCSATGVIRRHPDI 337
Query: 239 PWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSI 298
WLRR +DI+ L+ ILN++W +LKPGG L++ TCS+ +E+++Q F N+ D
Sbjct: 338 KWLRRASDIEDLAALQGDILNSIWPLLKPGGTLVYATCSVLPKENQQQVAKFLANNDDVE 397
Query: 299 R--------LNSPG-QLLPTVNKKQDYDGFFYSLFQKR 327
L +PG QLLP + DGF+Y+ K+
Sbjct: 398 HIPLHDKDTLTTPGLQLLPG-----ESDGFYYAKMVKK 430
>gi|71905670|ref|YP_283257.1| Fmu, rRNA SAM-dependent methyltransferase [Dechloromonas aromatica
RCB]
gi|71845291|gb|AAZ44787.1| Fmu, rRNA SAM-dependent methyltransferase [Dechloromonas aromatica
RCB]
Length = 419
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 127/326 (38%), Positives = 192/326 (58%), Gaps = 24/326 (7%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR FLR++ E + + + + +P WW+ Q++ YP+ W+ I+ G+ P
Sbjct: 116 LVNAVLRNFLRQQ-EALVAALADDAVAVSQHPDWWLAQLQAAYPD--DWQRIVAAGNAPP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
P+ LR+N R+ + Y L +G+ T +G + L P+ + + F G S+QD
Sbjct: 173 PMGLRVNVRRASRDDYLARLTDAGISATAVGESGLALAKPVPVESLLGFAAGLLSVQDPG 232
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQ+AA LLD G VLDAC+APGGKT HLLE +D+ L+++D SR I ENL RL L
Sbjct: 233 AQMAASLLDPEPGSRVLDACAAPGGKTAHLLERSDLDLLALDLKPSRCRRIEENLSRLGL 292
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A++ +D K++ ++ + FD +LAD+PCT SGVVRRNPD W
Sbjct: 293 TASVKAADCVKLDT----------------WWDGRPFDAVLADVPCTASGVVRRNPDTKW 336
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR+ DI +K +IL+ LW++++PGGKLL+VTCS++ E+ Q F + ++ R
Sbjct: 337 LRREADIFSFAKTQARILDALWQVVRPGGKLLYVTCSVFPTENGVQIARFLERQPEARRC 396
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQK 326
+ QLLPT D+DGF+Y L +K
Sbjct: 397 HEE-QLLPTA----DHDGFYYCLLEK 417
>gi|349574641|ref|ZP_08886579.1| ribosomal RNA small subunit methyltransferase B [Neisseria
shayeganii 871]
gi|348013754|gb|EGY52660.1| ribosomal RNA small subunit methyltransferase B [Neisseria
shayeganii 871]
Length = 419
Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 125/326 (38%), Positives = 184/326 (56%), Gaps = 24/326 (7%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+ NA+LR FLR++ + ++ N Y N WW+ +++ YP W NI ++ P
Sbjct: 116 LCNALLRRFLREREALLRAAAGNEVGKY-NLTAWWLQRLRADYPK--HWHNIAAAFNRHP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
P+TLRIN+R+ Y +L++ G++ T++G A+ L + + +P F G S+QD
Sbjct: 173 PMTLRINRRRMDAEGYLNVLREHGMDGTVLGSHALMLAEAVPVDALPLFAEGVVSVQDWG 232
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQ AA LD+ G VLDAC+APGGK+ HLLE AD +L ++D + RL + +NL+RL L
Sbjct: 233 AQQAAEWLDVHDGERVLDACAAPGGKSGHLLEWADCRLTALDIDAYRLQRVRDNLQRLGL 292
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
+A Y FD +LAD+PCT SGVVRR+PDI W
Sbjct: 293 QAHT----------------EAADAAAWASCYDGPPFDAVLADVPCTASGVVRRHPDIKW 336
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR D K + +L+ LW+++KPGG++L TCSL+ EE++ Q F + H D++
Sbjct: 337 LRRPQDAAKTAAQQTLLLDRLWQLVKPGGRMLLATCSLFHEENDGQLQHFLQGHADAVCR 396
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQK 326
S LLP N +Q DGF+Y+L K
Sbjct: 397 RSE-TLLP--NDRQ--DGFYYALLDK 417
>gi|119471679|ref|ZP_01614064.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Alteromonadales
bacterium TW-7]
gi|119445458|gb|EAW26745.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Alteromonadales
bacterium TW-7]
Length = 431
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 130/338 (38%), Positives = 201/338 (59%), Gaps = 35/338 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INAILR F R++ E+ + K I +N+P W+I QVK YP W+ IL+ ++
Sbjct: 117 LINAILRSFQRQQAEL-EEKAKLIPVCLYNHPNWFIKQVKEAYPE--NWEAILEENQQQA 173
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+NQ + + Y+ +L + +E T+ IKL P + +P+F G CS+QD
Sbjct: 174 PMWLRVNQSQFSTQEYSDMLTANDIEHTLNPNFIDGIKLAKPRDVFSLPEFDTGACSVQD 233
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRL 178
AAAQLAA L+ + +LDAC+APGGKTCH+LE+AD ++++D++ +RL + +NL R+
Sbjct: 234 AAAQLAARFLEPKDDDVILDACAAPGGKTCHILELADADVLALDSDATRLERVKQNLTRI 293
Query: 179 NLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDI 238
L A L D S+ + ++ ++ FDRIL D+PC+ +GV+RR+PDI
Sbjct: 294 GLGADLQCGDASQPH----------------TWWDDEQFDRILLDVPCSATGVIRRHPDI 337
Query: 239 PWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSI 298
WLRR +DI+ L+ ILN++W +LKPGG L++ TCS+ +E+++Q F N+ D
Sbjct: 338 KWLRRASDIEDLAALQGDILNSIWPLLKPGGTLVYATCSVLPKENQQQIAKFLANNDDVE 397
Query: 299 R--------LNSPG-QLLPTVNKKQDYDGFFYSLFQKR 327
L +PG QLLP + DGF+Y+ K+
Sbjct: 398 HIPLHDKDTLTTPGLQLLPG-----ESDGFYYAKMVKK 430
>gi|359435207|ref|ZP_09225430.1| ribosomal RNA small subunit methyltransferase B [Pseudoalteromonas
sp. BSi20652]
gi|357918108|dbj|GAA61679.1| ribosomal RNA small subunit methyltransferase B [Pseudoalteromonas
sp. BSi20652]
Length = 431
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 130/338 (38%), Positives = 200/338 (59%), Gaps = 35/338 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INAILR F R++ E+ + K I +N+P W+I QVK YP+ W+ IL ++
Sbjct: 117 LINAILRSFQRQQVEL-EEKAKLIPVCLYNHPNWFIKQVKEAYPD--SWEGILAENQQQA 173
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+NQ + + Y+ +L + +E T+ IKL P + +P+F G CS+QD
Sbjct: 174 PMWLRVNQSQYSTQEYSDMLAANDIEHTVNPDFIDGIKLTKPRDVFSLPEFDTGACSVQD 233
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRL 178
AAAQLAA L+ + G +LDAC+APGGKTCH+LE+AD ++++D++ +RL + +NL R+
Sbjct: 234 AAAQLAARFLEPKDGDTILDACAAPGGKTCHILELADADVLALDSDSTRLERVKQNLTRI 293
Query: 179 NLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDI 238
L A L D S+ + ++ K FDRIL D+PC+ +GV+RR+PDI
Sbjct: 294 GLGADLQCGDASQPH----------------TWWDEKLFDRILLDVPCSATGVIRRHPDI 337
Query: 239 PWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSI 298
WLRR +DI L+ IL+++W +LKPGG L++ TCS+ +E+++Q F N+ D
Sbjct: 338 KWLRRASDIVDLATLQNDILDSIWPLLKPGGTLVYATCSVLPQENQQQVAKFLANNDDVE 397
Query: 299 R--------LNSPG-QLLPTVNKKQDYDGFFYSLFQKR 327
+ +PG QLLP + DGF+Y+ K+
Sbjct: 398 HIPLHDKDTITTPGLQLLPG-----ESDGFYYAKLVKK 430
>gi|398808868|ref|ZP_10567725.1| ribosomal RNA small subunit methyltransferase RsmB [Variovorax sp.
CF313]
gi|398086684|gb|EJL77295.1| ribosomal RNA small subunit methyltransferase RsmB [Variovorax sp.
CF313]
Length = 444
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 134/349 (38%), Positives = 199/349 (57%), Gaps = 44/349 (12%)
Query: 2 INAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
INA LR FLR++ E+ + + WN+P WWI ++K +P +W+ +L + + P
Sbjct: 115 INACLRRFLRERDELVGATDSE-PVAQWNHPRWWIERLKRDHPR--EWQRVLGADNAQAP 171
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+TLR+N +K+T SY L+ +GL T +GP ++L + ++P F +G CS+QDAAA
Sbjct: 172 MTLRVNVQKSTAASYLVELEAAGLGATRVGPSGLQLTRARPVQQLPGFADGACSVQDAAA 231
Query: 122 QLAAPLL-----DIRSG----MYVLDACSAPGGKTCHLLEIA-----DIKLISVDNNLSR 167
Q+AAPLL + G + VLDAC+APGGKT HLLE+A D+ + VD SR
Sbjct: 232 QMAAPLLLEGLLPAKPGAAVPLRVLDACAAPGGKTAHLLEMATPGAIDVTALEVDAARSR 291
Query: 168 LNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCT 227
I E L RL L A ++++D + +++ FD IL D PCT
Sbjct: 292 --RIDETLARLGLSAKVLVADAGRPA----------------QWWDGTPFDAILLDAPCT 333
Query: 228 GSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQA 287
SG+VRR+PD+ WLRR++D +L+ +L LW +++ GG+LL+ TCS++ EE +Q
Sbjct: 334 ASGIVRRHPDVRWLRRESDTAQLAAQQAALLAALWPLVRRGGRLLYCTCSVFREEGSQQI 393
Query: 288 IIFSKNHKDSIRLNSPGQLLPTV---------NKKQDYDGFFYSLFQKR 327
F ++ D+ L SPG LLP N D+DGFFY+L +KR
Sbjct: 394 DAFLVHNTDARLLPSPGHLLPQSGSNARGVPDNPSGDHDGFFYALLEKR 442
>gi|359455367|ref|ZP_09244599.1| ribosomal RNA small subunit methyltransferase B [Pseudoalteromonas
sp. BSi20495]
gi|358047597|dbj|GAA80848.1| ribosomal RNA small subunit methyltransferase B [Pseudoalteromonas
sp. BSi20495]
Length = 431
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 130/338 (38%), Positives = 201/338 (59%), Gaps = 35/338 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INAILR F R++ E+ + K I +N+P W+I QVK YP+ W++IL ++
Sbjct: 117 LINAILRSFQRQQVEL-EEKAKLIPVCLYNHPNWFIKQVKEAYPD--SWEDILAENQQQA 173
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+NQ + + Y+ +L + +E T+ IKL P + +P+F G CS+QD
Sbjct: 174 PMWLRVNQAQYSTQEYSDMLTANDIEHTLNPDFIDGIKLAKPRDVFSLPEFDTGACSVQD 233
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRL 178
AAAQLAA L+ ++ +LDAC+APGGKTCH+LE+AD ++++D++ +RL + +NL R+
Sbjct: 234 AAAQLAARFLEPKADDTILDACAAPGGKTCHILELADADVLALDSDSTRLERVKQNLTRI 293
Query: 179 NLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDI 238
L A L D S+ + ++ K FDRIL D+PC+ +GV+RR+PDI
Sbjct: 294 GLGADLQCGDASQPH----------------TWWDEKLFDRILLDVPCSATGVIRRHPDI 337
Query: 239 PWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSI 298
WLRR +DI L+ ILN++W +LKPGG L++ TCS+ +E+++Q F N+ D+
Sbjct: 338 KWLRRASDIVDLAALQGDILNSIWPLLKPGGTLVYATCSVLPQENQQQVAKFLANNDDAE 397
Query: 299 RL--------NSPG-QLLPTVNKKQDYDGFFYSLFQKR 327
+ PG QLLP + DGF+Y+ K+
Sbjct: 398 HIPLHDKDTVTMPGLQLLPG-----ESDGFYYAKLVKK 430
>gi|393763531|ref|ZP_10352151.1| ribosomal RNA small subunit methyltransferase B [Alishewanella agri
BL06]
gi|392605599|gb|EIW88490.1| ribosomal RNA small subunit methyltransferase B [Alishewanella agri
BL06]
Length = 430
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 134/336 (39%), Positives = 201/336 (59%), Gaps = 33/336 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR +++K E+F + + N+P W IN+++ YP QW+ IL +K
Sbjct: 116 LINAVLRN-VQRKPELFDFCQASSAVQF-NHPGWLINELQQAYPE--QWQTILTANQQKA 171
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT---IIGPLAIKLHTPISISKIPKFFNGFCSIQ 117
PL LR+NQ++ + +Y K L ++G+ + P+AIKL I+ +P + G+ S+Q
Sbjct: 172 PLWLRVNQQQISPDAYLKALDEAGIAASQPFAYLPVAIKLEQACDITTLPGYTEGWFSVQ 231
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
DAAAQ AA L ++ VLDACSAPGGKTCHLLE A ++L ++D + +RL ++ENL
Sbjct: 232 DAAAQHAAFFLAPQASERVLDACSAPGGKTCHLLEQAPALQLTALDRDATRLQRVTENLA 291
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A ++ +D+ +D +++++ FDRIL D+PC+ +GV+RR+P
Sbjct: 292 RLKLSARVVAADV---------LDTAS-------WWQSELFDRILLDVPCSATGVIRRHP 335
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR+K DI L+ +IL W++LKPGG LL+ TCS+ E+ EQ F H D
Sbjct: 336 DIRWLRKKTDIAPLTVLQQQILQCAWQLLKPGGTLLYATCSVLPAENREQLQQFMAQHSD 395
Query: 297 SIRLNSPG------QLLPTVNKKQDYDGFFYSLFQK 326
+ L+ P Q+LP +QD DGFFY+L K
Sbjct: 396 ASLLSLPELGVNSWQILP---GEQDMDGFFYALLHK 428
>gi|398805421|ref|ZP_10564396.1| ribosomal RNA small subunit methyltransferase RsmB [Polaromonas sp.
CF318]
gi|398091632|gb|EJL82067.1| ribosomal RNA small subunit methyltransferase RsmB [Polaromonas sp.
CF318]
Length = 448
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 130/344 (37%), Positives = 197/344 (57%), Gaps = 40/344 (11%)
Query: 2 INAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
IN LR FLR++ E+ ++ ++ WN+P WWI++V+ +P QW+ +L + + P
Sbjct: 123 INGCLRRFLREREELV-ARTEKSPQAVWNHPQWWIDRVRKDHPG--QWQAMLQANNSRAP 179
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
L LR+N+RKTT Y + L + +E + +G + L ++ +P F G S+QDAAA
Sbjct: 180 LILRVNERKTTQAGYLQALASAQIEASPVGKYGVILAAARPVTSLPGFAEGHFSVQDAAA 239
Query: 122 Q---------LAAP-LLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMI 171
Q LA P D R +LDAC+APGGKT HLLE+AD ++ ++D + R +
Sbjct: 240 QLAAPLLLEGLAGPERSDARPN--ILDACAAPGGKTAHLLELADCEVTALDIDPRRCERV 297
Query: 172 SENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGV 231
+NL RL L+A + + D + + ++ + +D IL D PCT SG+
Sbjct: 298 GQNLLRLGLQAEVRVGDAGRPD----------------GWWDGRLYDGILLDAPCTASGI 341
Query: 232 VRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFS 291
VRR+PD+ WLRR DI +L+ K+L LW +LKPGG+LL+ TCS++ E EEQ F
Sbjct: 342 VRRHPDVRWLRRPTDIAQLAAIQAKLLQTLWPLLKPGGRLLYCTCSVFRAEGEEQIQTFL 401
Query: 292 KNHKDSIRLNSPGQLLP------TV---NKKQDYDGFFYSLFQK 326
+H D++ SPG LLP TV N +++DGF+Y+L +K
Sbjct: 402 THHTDALLRPSPGHLLPQSGVEATVFPDNLMREHDGFYYALLEK 445
>gi|359450337|ref|ZP_09239791.1| ribosomal RNA small subunit methyltransferase B [Pseudoalteromonas
sp. BSi20480]
gi|358043886|dbj|GAA76040.1| ribosomal RNA small subunit methyltransferase B [Pseudoalteromonas
sp. BSi20480]
Length = 431
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 130/338 (38%), Positives = 200/338 (59%), Gaps = 35/338 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INAILR F R++ E+ + K I +N+P W+I QVK YP W+ IL+ ++
Sbjct: 117 LINAILRSFQRQQAEL-EEKAKLIPVCLYNHPNWFIKQVKEAYPE--NWEAILEENQQQA 173
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+NQ + + Y+ +L + +E T+ IKL P + +P+F G CS+QD
Sbjct: 174 PMWLRVNQSQFSTQEYSDMLTANDIEHTLNPNFIDGIKLAKPRDVFSLPEFDTGACSVQD 233
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRL 178
AAAQLAA L+ + +LDAC+APGGKTCH+LE+AD ++++D++ +RL + +NL R+
Sbjct: 234 AAAQLAARFLEPKDDDVILDACAAPGGKTCHILELADADVLALDSDATRLERVKQNLTRI 293
Query: 179 NLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDI 238
L A L D S+ + ++ ++ FDRIL D+PC+ +GV+RR+PDI
Sbjct: 294 GLGADLQCGDASQPH----------------TWWDDEQFDRILLDVPCSATGVIRRHPDI 337
Query: 239 PWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSI 298
WLRR +DI+ L+ ILN++W +LKPGG L++ TCS+ +E+++Q F N+ D
Sbjct: 338 KWLRRASDIEDLAALQGDILNSIWPLLKPGGTLVYATCSVLPKENQQQVAKFLANNDDVE 397
Query: 299 R--------LNSPG-QLLPTVNKKQDYDGFFYSLFQKR 327
L PG QLLP + DGF+Y+ K+
Sbjct: 398 HIPLHDKDTLTIPGLQLLPG-----ESDGFYYAKMVKK 430
>gi|414071413|ref|ZP_11407382.1| ribosomal RNA small subunit methyltransferase B [Pseudoalteromonas
sp. Bsw20308]
gi|410806133|gb|EKS12130.1| ribosomal RNA small subunit methyltransferase B [Pseudoalteromonas
sp. Bsw20308]
Length = 431
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 130/338 (38%), Positives = 201/338 (59%), Gaps = 35/338 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INAILR F R++ E+ + K I +N+P W+I QVK YP+ W++IL ++
Sbjct: 117 LINAILRSFQRQQIEL-EEKAKLIPVCLYNHPNWFIKQVKEAYPD--SWEDILAENQQQA 173
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+NQ + + Y+ +L + +E T+ IKL P + +P+F G CS+QD
Sbjct: 174 PMWLRVNQAQYSTQEYSDMLTANDIEHTLNPDFIDGIKLAKPRDVFSLPEFDTGACSVQD 233
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRL 178
AAAQLAA L+ ++ +LDAC+APGGKTCH+LE+AD ++++D++ +RL + +NL R+
Sbjct: 234 AAAQLAARFLEPKADDTILDACAAPGGKTCHILELADADVLALDSDSTRLERVKQNLTRI 293
Query: 179 NLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDI 238
L A L D S+ + ++ K FDRIL D+PC+ +GV+RR+PDI
Sbjct: 294 GLGADLQCGDASQPH----------------TWWDEKLFDRILLDVPCSATGVIRRHPDI 337
Query: 239 PWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSI 298
WLRR +DI L+ ILN++W +LKPGG L++ TCS+ +E+++Q F N+ D+
Sbjct: 338 KWLRRASDIVDLAALQGDILNSIWPLLKPGGTLVYATCSVLPQENQQQVAKFLANNDDAE 397
Query: 299 RL--------NSPG-QLLPTVNKKQDYDGFFYSLFQKR 327
+ PG QLLP + DGF+Y+ K+
Sbjct: 398 HIPLHDKDTVTMPGLQLLPG-----ESDGFYYAKLVKK 430
>gi|257091709|ref|YP_003165350.1| sun protein [Candidatus Accumulibacter phosphatis clade IIA str.
UW-1]
gi|257044233|gb|ACV33421.1| sun protein [Candidatus Accumulibacter phosphatis clade IIA str.
UW-1]
Length = 442
Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 123/326 (37%), Positives = 197/326 (60%), Gaps = 24/326 (7%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++N +LR +LR++ E + M E+ +P WW+ +++ YP W+ I+ G+ P
Sbjct: 139 LVNGLLRSYLRQR-ESLAAAMAGDDEAVQQHPAWWLARLRRAYPE--HWQEIVAAGNGPP 195
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
P+TLR+N+R+ T +Y L ++G + A+ L P+++ +P F +G SIQDA
Sbjct: 196 PMTLRVNRRRATSEAYAARLLEAGSSARQVAANALLLAKPVTVDALPGFADGLVSIQDAG 255
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQ AA LL +G +LDAC+APGGK HLLE ADI L+++D + +R I +NL+RL L
Sbjct: 256 AQRAAQLLLPVAGERILDACAAPGGKAAHLLEAADIDLLALDIDATRTRRIEDNLRRLGL 315
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A + ++D + + + ++ FD ILAD+PC+ SGVVRR+PDI +
Sbjct: 316 VAKVGVADC-------------RASGD---WWDGLPFDAILADVPCSASGVVRRHPDIKY 359
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR++DI++ + +L+ LW +LKPGG+LL+ TCS++ EE+E Q F + RL
Sbjct: 360 LRRESDIRRFALLQADLLDQLWPLLKPGGRLLYATCSVFPEENEGQIDAFLVRQPTARRL 419
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQK 326
+LLP ++++DGF+Y+L +K
Sbjct: 420 VEE-RLLP----REEHDGFYYALLRK 440
>gi|397661083|ref|YP_006501783.1| ribosomal RNA small subunit methyltransferase [Taylorella
equigenitalis ATCC 35865]
gi|394349262|gb|AFN35176.1| ribosomal RNA small subunit methyltransferase [Taylorella
equigenitalis ATCC 35865]
Length = 425
Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 144/326 (44%), Positives = 193/326 (59%), Gaps = 24/326 (7%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA LR FLR K E+ + NI+E+ +YP WW ++K +YPN + +L+ K
Sbjct: 123 LLNACLRNFLRNKTELIRG--LNIYENL-SYPQWWYEKLKNSYPN--TYLEVLNADKKYA 177
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
+ LRIN RK + Y KLL +E IG IKL ++I+ +P + G S+QD
Sbjct: 178 SINLRINTRKISRADYLKLLSTQNIEFEEIGESGIKLSKSVNIATLPGYDEGLFSVQDIG 237
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQ AA L I++G YVLDACSAPGGK HLLE DI L+ +D + RL + ENL RL+L
Sbjct: 238 AQSAAFQLPIKNGDYVLDACSAPGGKAAHLLERFDIDLLCMDADKERLERVKENLNRLDL 297
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
N+ L D + K ++ + FD ILAD+PCTGSGVVRR+PDI W
Sbjct: 298 LGQ---------NVHLLEGDASLKD-----WWDGRKFDAILADVPCTGSGVVRRHPDIKW 343
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LR++ D+ K + KI+ NLW MLK GG LL+VTCS++ EE E QA F+ + RL
Sbjct: 344 LRKEVDVIKTVELQRKIIINLWDMLKFGGYLLYVTCSVFKEEGELQAQYFTTKLEGIERL 403
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQK 326
S G + P KQ DGFFY+LF+K
Sbjct: 404 PSLGHIFPP---KQ--DGFFYALFKK 424
>gi|319940730|ref|ZP_08015072.1| hypothetical protein HMPREF9464_00291 [Sutterella wadsworthensis
3_1_45B]
gi|319805881|gb|EFW02648.1| hypothetical protein HMPREF9464_00291 [Sutterella wadsworthensis
3_1_45B]
Length = 456
Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 121/343 (35%), Positives = 192/343 (55%), Gaps = 36/343 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR FLR++ +I ++ + +N P+WWI ++K ++P+ W+ IL +G
Sbjct: 132 LINAVLRRFLREREQISAVLQKDL-DVRFNAPLWWIRRIKESHPS--NWEEILRIGTLHA 188
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
P+TLR+N R+ T +Y + LK G+ +G A+ L +P+ + IP F G S+QDA
Sbjct: 189 PMTLRVNARRITPAAYLEELKARGIPALRVGRSAVMLESPLPVKDIPGFTEGIVSVQDAG 248
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
QLAA +L + +LDAC+APGGKT HLLE AD + +++ + R +I L RL +
Sbjct: 249 TQLAAEILAPKKNEQILDACAAPGGKTAHLLESADCHVTALEIDPKRAELIKSTLLRLGV 308
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
+AT+ +D + ++ ++ + FD IL D PCT SG+VRR PD+PW
Sbjct: 309 EATVRAADAAMVS----------------EWHSGREFDAILLDAPCTASGIVRRQPDVPW 352
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
RR D +L++ ++LN LW ++K GG+LL+ TCS++ EE +Q F+ NH D+
Sbjct: 353 SRRPEDPARLAREQARLLNALWPLVKKGGRLLYCTCSIFPEEGPDQIRRFTANHGDAQLT 412
Query: 301 ---NSPGQLL--------------PTVNKKQDYDGFFYSLFQK 326
+P ++ P + +DGFFY+L K
Sbjct: 413 AFKGAPTGMMSLVPADHVHELPFNPNAAEPLVHDGFFYALLTK 455
>gi|77359003|ref|YP_338578.1| 16S rRNA methyltransferase [Pseudoalteromonas haloplanktis TAC125]
gi|76873914|emb|CAI85135.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Pseudoalteromonas
haloplanktis TAC125]
Length = 431
Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 128/338 (37%), Positives = 201/338 (59%), Gaps = 35/338 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INAILR F R++ E+ + K I +N+P W+I QVK YP+ W+++L ++
Sbjct: 117 LINAILRSFQRQQLEL-EEKAKLIPVCLYNHPNWFIKQVKEAYPD--SWEDLLAENQQQA 173
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+NQ + + Y+ +L + +E T+ IKL P + +P+F G CS+QD
Sbjct: 174 PMWLRVNQAQYSTQEYSDMLTANDIEHTLNPDFIDGIKLAKPRDVFSLPEFDTGACSVQD 233
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRL 178
AAAQLAA L+ + +LDAC+APGGKTCH+LE+AD +++++D++ +RL + +NL R+
Sbjct: 234 AAAQLAARFLEPKDDDTILDACAAPGGKTCHILELADAEVLALDSDATRLERVKQNLTRI 293
Query: 179 NLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDI 238
L A L D S+ + ++ K FDRIL D+PC+ +GV+RR+PDI
Sbjct: 294 GLGADLQCGDASQPH----------------TWWDEKQFDRILLDVPCSATGVIRRHPDI 337
Query: 239 PWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSI 298
WLRR +DI L+ IL+++W +LKPGG L++ TCS+ +E+++Q F N+ D
Sbjct: 338 KWLRRASDIADLAALQGDILDSIWPLLKPGGTLVYATCSVLPQENQQQVAKFLANNNDVE 397
Query: 299 RL--------NSPG-QLLPTVNKKQDYDGFFYSLFQKR 327
+ +PG QLLP + DGF+Y+ K+
Sbjct: 398 HIPLHDKDTPTTPGLQLLPG-----ESDGFYYAKLVKK 430
>gi|145590255|ref|YP_001156852.1| sun protein [Polynucleobacter necessarius subsp. asymbioticus
QLW-P1DMWA-1]
gi|145048661|gb|ABP35288.1| sun protein [Polynucleobacter necessarius subsp. asymbioticus
QLW-P1DMWA-1]
Length = 438
Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 133/336 (39%), Positives = 196/336 (58%), Gaps = 33/336 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR+ + Y P WW +K Y W+ IL K+
Sbjct: 123 LVNAVLRKVSLALQPVADKPFYPPDPIAMFVPPWWRASLKRNYSK--DWQAILFAQAKRA 180
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLET----TIIG---PLAIKLHTPISISKIPKFFNGF 113
PL LR+NQ++ + Y LL +SG+++ I G P A+ L + +S +P F++G
Sbjct: 181 PLILRVNQKQYSRDEYRALLTESGIQSKPINAIAGISLPSALLLPDAVPVSDLPGFYSGA 240
Query: 114 CSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISE 173
S+QDA AQLAA LL+ ++ +LDAC+APGGKT HLLE+AD ++ +++ + RL I
Sbjct: 241 VSVQDAGAQLAATLLNPQADELILDACAAPGGKTAHLLELADCQMRALELDGKRLGKIGG 300
Query: 174 NLKRLNL---KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSG 230
NL RL L KA ++ D SK ++ FD+IL D PC+ SG
Sbjct: 301 NLDRLRLHSEKAKVLRGDASK-----------------SAWWDGVPFDKILIDAPCSASG 343
Query: 231 VVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIF 290
+V R+PDIP+LRR++DI L + +IL WKMLK GG LL+VTCS++ EE E+QA+ F
Sbjct: 344 IVARHPDIPFLRRESDIPVLQQRQREILTQAWKMLKSGGILLYVTCSVFPEEGEDQAVWF 403
Query: 291 SKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 326
++ H +++RL++PGQLLPT DGF+Y+LF+K
Sbjct: 404 AQEHSNALRLDAPGQLLPT----DANDGFYYALFKK 435
>gi|119773183|ref|YP_925923.1| sun protein [Shewanella amazonensis SB2B]
gi|119765683|gb|ABL98253.1| sun protein [Shewanella amazonensis SB2B]
Length = 427
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 130/337 (38%), Positives = 194/337 (57%), Gaps = 37/337 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++N +LR R+ + +S +N+P W I ++K YP W+NI++ H++P
Sbjct: 114 VVNGVLRNIQRQVPPLDESN----DTLKYNFPAWIIRRLKDAYPE--TWENIIEASHQRP 167
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR N+R + +Y + L + + + + GP AI L ++++P F +G S+QD
Sbjct: 168 PMWLRNNRRHQSRDAYLQALSDAEV-SAVAGPGEDAICLEFATDVARLPHFADGASSVQD 226
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRL 178
AAQ AA LL R G VLDAC+APGGK+CHLLE+ADI+L++VD + RL +S+NL+RL
Sbjct: 227 GAAQWAASLLAPRDGELVLDACAAPGGKSCHLLELADIELVAVDFDQKRLERVSQNLERL 286
Query: 179 NLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDI 238
L A +I D I +++ FDRIL D PC+ +GV+RR+PDI
Sbjct: 287 KLDARVIHGDAGDIG----------------SWWQGGKFDRILLDAPCSATGVIRRHPDI 330
Query: 239 PWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSI 298
WLR+ NDI +L+K +IL+N W+ LKPGG LL+ TCS+ EE+ EQ F + D+
Sbjct: 331 KWLRQNNDIAELAKLQQQILDNCWQWLKPGGTLLYATCSILPEENREQIKAFLERTPDAT 390
Query: 299 RLNSPG---------QLLPTVNKKQDYDGFFYSLFQK 326
P Q+LP + D DGF+Y+ +K
Sbjct: 391 LETLPNQANNNDIGWQILPG---QDDMDGFYYARLKK 424
>gi|383760313|ref|YP_005439299.1| Sun domain protein [Rubrivivax gelatinosus IL144]
gi|381380983|dbj|BAL97800.1| Sun domain protein [Rubrivivax gelatinosus IL144]
Length = 438
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 133/345 (38%), Positives = 203/345 (58%), Gaps = 39/345 (11%)
Query: 2 INAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
INA+LR F+R++ + S + ++ N+P+WWI +V+ +P QW+ +L + PP
Sbjct: 112 INAVLRRFVREREHLANSARHQPLGAF-NHPLWWIERVRHDWPT--QWQALLAAANVHPP 168
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTII-----GPLAIKLHTPISISKIPKFFNGFCSI 116
TLR+N+R+ + +Y + L G +++ G AI L P ++++P F G S+
Sbjct: 169 FTLRVNRRRGSGEAYLQRLAAQGRAASLVDDPALGGQAIVLAEPCPVTQLPGFAEGEVSV 228
Query: 117 QDAAAQLAAPLL---DIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISE 173
QDAAAQ AAPLL + +G VLDAC+APGGKT HLLE+AD+ L+++D++ RL + E
Sbjct: 229 QDAAAQRAAPLLVGAGLPAGARVLDACAAPGGKTAHLLELADLDLLALDSDPVRLVRVQE 288
Query: 174 NLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVR 233
NL RL L+A + SD + T N ++ + FD IL D PC+ SG+VR
Sbjct: 289 NLHRLQLQAQVRASDA-------------RDTAN---WWDGRPFDAILLDAPCSASGIVR 332
Query: 234 RNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKN 293
R+PD+ WLRR +DI L++ ++L+ LW +L PGG+L++ TCSL+ E EQ F +
Sbjct: 333 RHPDVRWLRRPDDITALARLQAEMLDALWPLLAPGGRLVYATCSLFRSEGAEQIDAFLQR 392
Query: 294 HKD---SIRLNSPGQLLPTVN---------KKQDYDGFFYSLFQK 326
H D S+ SPG LLP + ++ +DGF+Y+L K
Sbjct: 393 HGDAGASLDPQSPGHLLPLADNSPHPSATPRRALHDGFYYALIHK 437
>gi|119900274|ref|YP_935487.1| Sun protein [Azoarcus sp. BH72]
gi|119672687|emb|CAL96601.1| Sun protein [Azoarcus sp. BH72]
Length = 426
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 117/326 (35%), Positives = 180/326 (55%), Gaps = 19/326 (5%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
M+N +LR LR+ E+ + + + +P WWI +++ +P+ W + G+ P
Sbjct: 118 MVNGVLRNSLRQHEEVAAWRSAS-EVARMRHPAWWIARLRRQWPD--AWPAVAAAGNLPP 174
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
P+ LR+N+R L +G+ + L P ++ ++P F G S+QDA
Sbjct: 175 PMALRVNRRTARRDDVLAELASAGIGARPCDEDGVLLEVPCAVVRLPGFAEGRVSVQDAG 234
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQ AA LLD G VLDAC+APGGK HLLE AD++L++++ R I NL+RL L
Sbjct: 235 AQYAARLLDPHDGDRVLDACAAPGGKAAHLLERADVQLLALELAPERAARIGANLQRLGL 294
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
+A++ + D ++ ++ FDRILAD+PC+ SGVVRR+PDI W
Sbjct: 295 EASVKVGDCRAVD----------------SWWDGTPFDRILADVPCSASGVVRRHPDIKW 338
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR DI + +IL+ LW+ L+PGG +L+ TCS++ EE+ Q F H D++ +
Sbjct: 339 LRRDEDIAGFAAQQAEILDALWRTLRPGGTMLYATCSVFEEENAGQVAAFLARHADALSV 398
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQK 326
+ GQ + D+DGFFY+L +K
Sbjct: 399 SIDGQPHLCLLPDADHDGFFYALLRK 424
>gi|89902354|ref|YP_524825.1| sun protein [Rhodoferax ferrireducens T118]
gi|89347091|gb|ABD71294.1| sun protein [Rhodoferax ferrireducens T118]
Length = 454
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 129/339 (38%), Positives = 201/339 (59%), Gaps = 32/339 (9%)
Query: 2 INAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
INA LR FLR++ + + N + WN+P+WWI +++ +P+ QW++IL ++ P
Sbjct: 133 INACLRRFLRERDTLVQLTDQN-PVALWNHPLWWIKRLQKDWPD--QWQSILAANNRHAP 189
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+TLR+N R++ ++ Y +LLK +GL + G + L + +P F G S+QDAAA
Sbjct: 190 MTLRMNLRRSAVLPYLQLLKDAGLNASAAGSSGVTLEQAKPVQALPGFAEGLFSVQDAAA 249
Query: 122 QLAAPL----LDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKR 177
QLAAPL L +LDAC+APGGKT HLLEI + K+ ++D + +R I + L+R
Sbjct: 250 QLAAPLLLSGLAAAGSPQILDACAAPGGKTAHLLEITEGKVTALDVDPARCERIHQTLQR 309
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L+A ++++D + ++ ++ + FD IL D PCT SG+VRR+PD
Sbjct: 310 LGLEARVLVADAANVSA----------------WWDGQLFDAILLDAPCTASGIVRRHPD 353
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
+ WLRR++DI +L ++L LW++LKPGG+LL+ TCS++ E Q F ++ ++
Sbjct: 354 VRWLRRESDIAQLVATQARLLKALWQVLKPGGRLLYCTCSVFRAEGGNQIQTFLAHNTEA 413
Query: 298 IRLNSPGQLLPT---------VNKKQDYDGFFYSLFQKR 327
L SPG LLP N D+DGF+Y+L +KR
Sbjct: 414 SLLPSPGHLLPVNRVTGDAVPDNPIGDHDGFYYALLEKR 452
>gi|392552737|ref|ZP_10299874.1| 16S rRNA methyltransferase [Pseudoalteromonas spongiae
UST010723-006]
Length = 427
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 125/337 (37%), Positives = 203/337 (60%), Gaps = 35/337 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR F R++ E+ ++ I +N+P W++N++K YPN W++I++ +
Sbjct: 114 LVNAVLRNFQRRQSEL-ENLADQIDACKYNHPGWFLNKLKTAYPN--NWQDIVEANQVQA 170
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + Y +LL + +E ++ A+ L + + K+P F G S+QD
Sbjct: 171 PMWLRVNGNYHSPKEYRELLLDADIEAHLVDQFDDALVLENAVDVFKLPGFELGHSSVQD 230
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRL 178
AAQLAA LL+ + G +LDAC+APGGKTCH+LE+A+ + ++D++ +RL + +NL+R+
Sbjct: 231 GAAQLAARLLEPKDGEKILDACAAPGGKTCHILELAECDVTALDHDATRLERVQQNLERI 290
Query: 179 NLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDI 238
L A LI +D S+ + ++ + FDRIL D+PC+ +GV+RR+PDI
Sbjct: 291 GLSAKLISADASQPD----------------DWWDGEQFDRILLDVPCSATGVIRRHPDI 334
Query: 239 PWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS- 297
WLRR +DI++L++ +IL +W +LK GG L++ TCS+ EE+ +Q F H D+
Sbjct: 335 KWLRRASDIEQLAQLQKQILEQIWPLLKSGGTLVYATCSVLPEENTDQIKRFLAQHADAK 394
Query: 298 -IRLN------SPG-QLLPTVNKKQDYDGFFYSLFQK 326
I LN PG QLLP ++DGFFY+ +K
Sbjct: 395 HIALNLADTIEQPGWQLLPD-----EHDGFFYAKIEK 426
>gi|319791338|ref|YP_004152978.1| sun protein [Variovorax paradoxus EPS]
gi|315593801|gb|ADU34867.1| sun protein [Variovorax paradoxus EPS]
Length = 456
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 130/346 (37%), Positives = 199/346 (57%), Gaps = 39/346 (11%)
Query: 2 INAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
INA LR FLR++ E+ + + WN+P WWI ++K +P W+ IL+ + + P
Sbjct: 130 INACLRRFLRERDELV-AITDQEPVAQWNHPRWWIEKLKRDHPR--DWQRILNADNAQAP 186
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+TLR+N K+T +Y L+ +GL T +G ++L + ++P F +G CS+QDAAA
Sbjct: 187 MTLRVNALKSTAAAYLSELEAAGLAATRVGASGLQLGRARPVQQLPGFADGACSVQDAAA 246
Query: 122 QLAAPLL-----DIRSG---MYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNM 170
Q+AAPLL + G + VLDAC+APGGKT HLLE+A ++I+++ + R
Sbjct: 247 QMAAPLLLEGLLPAKPGVAPLRVLDACAAPGGKTAHLLELAGPGAAEVIALEVDPIRSRR 306
Query: 171 ISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSG 230
I E L RL L+A ++++D ++ ++ FD IL D PCT SG
Sbjct: 307 IDETLARLGLQAKVVVADAARPA----------------DWWDGTPFDAILLDAPCTASG 350
Query: 231 VVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIF 290
+VRR+PD+ WLRR++D +L+ +L LW +++PGG+LL+ TCS++ EE +Q F
Sbjct: 351 IVRRHPDVRWLRRESDTAQLAGQQAALLAALWPLVRPGGRLLYCTCSVFREEGSQQIDAF 410
Query: 291 SKNHKDSIRLNSPGQLLPTV---------NKKQDYDGFFYSLFQKR 327
++ D+ SPG LLP N D+DGFFY+L +KR
Sbjct: 411 LAHNTDARLQPSPGHLLPQSGGNVRGVPDNPSGDHDGFFYALLEKR 456
>gi|456064437|ref|YP_007503407.1| Sun protein [beta proteobacterium CB]
gi|455441734|gb|AGG34672.1| Sun protein [beta proteobacterium CB]
Length = 437
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 130/334 (38%), Positives = 194/334 (58%), Gaps = 30/334 (8%)
Query: 1 MINAILREF-LRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKK 59
++NA+LR+ L + E K Y +P WW +K Y W+ +L ++
Sbjct: 123 LVNAVLRKVSLAVQAE--SEKPYPPDPIPMFFPPWWRASLKRNYSK--DWQAMLIQQAQR 178
Query: 60 PPLTLRINQRKTTLISYNKLLKKSGLE----TTIIG---PLAIKLHTPISISKIPKFFNG 112
PL LR+N ++ T Y LL + G+ T++ G A+ L P+ +S +P F++G
Sbjct: 179 APLILRVNAKQHTRQEYQDLLHEVGIAAEPITSVAGISLDSALLLREPVPVSDLPGFYSG 238
Query: 113 FCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMIS 172
S+QDA AQ+AA LLD + G +LDAC+APGGKT HLLE+A ++ +++ + RL I
Sbjct: 239 AVSVQDAGAQIAAVLLDPKPGERILDACAAPGGKTAHLLELAQCEMTALELDGERLGKIG 298
Query: 173 ENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVV 232
NL RL L++ + + + ++ ++ K FD+IL D PC+ SG+V
Sbjct: 299 GNLDRLRLRSD--------------EVRVVRGDASKSAWWDGKAFDKILLDAPCSASGIV 344
Query: 233 RRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSK 292
R+PDIP+LRR+ DIK L IL WKMLK GG LL+VTCS++ EE EEQA F+
Sbjct: 345 ARHPDIPFLRREADIKALQLRQRAILEQSWKMLKAGGTLLYVTCSVFPEEGEEQAAWFAA 404
Query: 293 NHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 326
H D++RL++PGQ+LP + DGF+Y+LF+K
Sbjct: 405 EHLDALRLSAPGQILPA----ELNDGFYYALFKK 434
>gi|238021729|ref|ZP_04602155.1| hypothetical protein GCWU000324_01632 [Kingella oralis ATCC 51147]
gi|237866343|gb|EEP67385.1| hypothetical protein GCWU000324_01632 [Kingella oralis ATCC 51147]
Length = 418
Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 129/325 (39%), Positives = 186/325 (57%), Gaps = 24/325 (7%)
Query: 3 NAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPPL 62
NAILR FLR+K + K+ Y+ + N PIW ++ YP W NI PPL
Sbjct: 118 NAILRRFLREKDGLNKACRYDDVAKH-NLPIWLQKTLQNQYPK--HWHNIATAFQAHPPL 174
Query: 63 TLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAAQ 122
TLR+N+R Y L +GL I+ AI+L + ++++P+F G+ S+QD AQ
Sbjct: 175 TLRVNRRHADAEQYLAALHDAGLNGKILDDYAIRLAQAVPVAQLPRFAEGWVSVQDWGAQ 234
Query: 123 LAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKA 182
AA LL+ + G VLDAC+APGGKT H+LE+AD L ++D RL + +NL RL+ +A
Sbjct: 235 QAAYLLNPQHGERVLDACAAPGGKTGHILELADCDLTALDIAPQRLQRVRDNLARLHFQA 294
Query: 183 TLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLR 242
L +D N +Y + FD ILAD+PCT SG ++RNPDI WLR
Sbjct: 295 ALHCAD----------------AQNLSDWYNGEPFDAILADIPCTASGTIKRNPDIKWLR 338
Query: 243 RKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS 302
R D K ++ +L+ LW LK GG++L TCS++ EE+++Q F H D+ RL++
Sbjct: 339 RPGDAYKTARQQEPLLDALWTTLKSGGRMLLATCSVFEEENQQQCHRFLNRHADA-RLHT 397
Query: 303 PGQLLPTVNKKQDYDGFFYSLFQKR 327
L+P+ +KQ DGF+Y+L +K
Sbjct: 398 EQTLIPS--EKQ--DGFYYALIEKH 418
>gi|417957673|ref|ZP_12600593.1| ribosomal RNA small subunit methyltransferase B [Neisseria weaveri
ATCC 51223]
gi|343968006|gb|EGV36244.1| ribosomal RNA small subunit methyltransferase B [Neisseria weaveri
ATCC 51223]
Length = 417
Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 129/326 (39%), Positives = 189/326 (57%), Gaps = 25/326 (7%)
Query: 3 NAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPPL 62
NAILR FLR+K ++ + +N + + +N P WWI+ +K YP W NI +PP+
Sbjct: 116 NAILRRFLREKDKLNTACKHN-NVAKYNLPEWWIDYLKNHYPK--HWHNIAAALQDRPPM 172
Query: 63 TLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAAQ 122
TLR+N+R++ Y +L + G+ + A+ L + + ++P F +G S+QD AQ
Sbjct: 173 TLRVNRRRSNAEQYLSILAEHGINAKALDDYAVMLEEAVPVGQLPGFSDGLVSVQDFGAQ 232
Query: 123 LAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK- 181
A L++ ++G +LDAC+APGGKT HLLE+AD + ++D + RL + NL+RL +
Sbjct: 233 QAGYLINPQNGDRILDACAAPGGKTGHLLELADCHVTALDIDPVRLQRVQSNLERLKFQT 292
Query: 182 ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWL 241
A+L +D +N +Y + FD ILAD+PCT SGVVRRNPDI WL
Sbjct: 293 ASLKCADAQDLNA----------------WYDKQNFDVILADVPCTASGVVRRNPDIKWL 336
Query: 242 RRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLN 301
RR D K ++ +L+ LW+ L GK+L TCS++ EE+E+Q F H D+ L
Sbjct: 337 RRPGDAAKTARQQEALLDTLWQTLTENGKMLLATCSIFVEENEQQLQKFLNRHDDA-ELI 395
Query: 302 SPGQLLPTVNKKQDYDGFFYSLFQKR 327
S LLP NK Q DGF+Y+L QK
Sbjct: 396 SSHVLLP--NKHQ--DGFYYALIQKH 417
>gi|345876229|ref|ZP_08828003.1| ribosomal RNA small subunit methyltransferase B [Neisseria weaveri
LMG 5135]
gi|343966834|gb|EGV35086.1| ribosomal RNA small subunit methyltransferase B [Neisseria weaveri
LMG 5135]
Length = 419
Score = 234 bits (597), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 129/326 (39%), Positives = 189/326 (57%), Gaps = 25/326 (7%)
Query: 3 NAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPPL 62
NAILR FLR+K ++ + +N + + +N P WWI+ +K YP W NI +PP+
Sbjct: 118 NAILRRFLREKDKLNTACKHN-NVAKYNLPEWWIDYLKNHYPK--HWHNIAAALQDRPPM 174
Query: 63 TLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAAQ 122
TLR+N+R++ Y +L + G+ + A+ L + + ++P F +G S+QD AQ
Sbjct: 175 TLRVNRRRSNAEQYLSILAEHGINAKALDDYAVMLEEAVPVGQLPGFSDGLVSVQDFGAQ 234
Query: 123 LAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK- 181
A L++ ++G +LDAC+APGGKT HLLE+AD + ++D + RL + NL+RL +
Sbjct: 235 QAGYLINPQNGDRILDACAAPGGKTGHLLELADCHVTALDIDPVRLQRVQSNLERLKFQT 294
Query: 182 ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWL 241
A+L +D +N +Y + FD ILAD+PCT SGVVRRNPDI WL
Sbjct: 295 ASLKCADAQDLNA----------------WYDKQNFDVILADVPCTASGVVRRNPDIKWL 338
Query: 242 RRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLN 301
RR D K ++ +L+ LW+ L GK+L TCS++ EE+E+Q F H D+ L
Sbjct: 339 RRPGDAAKTARQQEALLDTLWQTLTENGKMLLATCSIFVEENEQQLQKFLNRHDDA-ELI 397
Query: 302 SPGQLLPTVNKKQDYDGFFYSLFQKR 327
S LLP NK Q DGF+Y+L QK
Sbjct: 398 SSHVLLP--NKHQ--DGFYYALIQKH 419
>gi|325267933|ref|ZP_08134582.1| ribosomal RNA small subunit methyltransferase B [Kingella
denitrificans ATCC 33394]
gi|324980619|gb|EGC16282.1| ribosomal RNA small subunit methyltransferase B [Kingella
denitrificans ATCC 33394]
Length = 421
Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 127/326 (38%), Positives = 187/326 (57%), Gaps = 24/326 (7%)
Query: 3 NAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPPL 62
NAILR FLR++ + K+ ++ Y N P W + ++ YP W NI PPL
Sbjct: 118 NAILRRFLREREGLNKAARFDDTAKY-NLPAWLKSSLQQQYPK--HWHNIAAAFQMHPPL 174
Query: 63 TLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAAQ 122
TLR+N+R Y LL+++G+E I+ A++L+ + + ++P+F G S+QD AQ
Sbjct: 175 TLRVNRRYGNAERYAALLQQAGIEAKILDDYAVRLNEAVPVQQLPQFAEGHVSVQDWGAQ 234
Query: 123 LAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKA 182
AA LL ++ +LDAC+APGGKT H+LE+AD L ++D + RL + +NL RL L A
Sbjct: 235 QAAYLLQPQNNERILDACAAPGGKTGHILEMADCALTALDIDPVRLQRVQDNLTRLGLHA 294
Query: 183 TLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLR 242
L + ++ ++ + FD ILAD+PCT SG ++RNPDI WLR
Sbjct: 295 QLHCAAAQNLD----------------DWWDGQPFDAILADVPCTASGTIKRNPDIKWLR 338
Query: 243 RKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS 302
R ND K ++ +L+ LW+ LKPGG++L TCSL+ EE+ Q F + H D+ +L
Sbjct: 339 RPNDAAKTARQQEILLDRLWQTLKPGGRMLLATCSLFHEENGRQCQNFLQRHPDA-QLQQ 397
Query: 303 PGQLLPTVNKKQDYDGFFYSLFQKRK 328
LLP N KQ DGF+Y+L K +
Sbjct: 398 EQTLLP--NDKQ--DGFYYALISKSQ 419
>gi|241765995|ref|ZP_04763917.1| Fmu (Sun) domain protein [Acidovorax delafieldii 2AN]
gi|241364022|gb|EER59271.1| Fmu (Sun) domain protein [Acidovorax delafieldii 2AN]
Length = 404
Score = 234 bits (596), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 128/343 (37%), Positives = 200/343 (58%), Gaps = 34/343 (9%)
Query: 2 INAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
INA LR FLR++ + + + + WN+P WWI +++ +P W+ IL + + P
Sbjct: 76 INACLRRFLRERDTLVAATDTDP-VARWNHPQWWIAKLQKDHPQ--HWQQILHANNGRAP 132
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+ LR+N +K+T+ Y K L +E T +G + L P ++++P F G S+QDAAA
Sbjct: 133 MILRVNGQKSTVAQYQKALAAINIEATPVGEWGLALQHPRPVAELPGFAQGLVSVQDAAA 192
Query: 122 QLAAPLL----DIRSGMYVLDACSAPGGKTCHLLEIAD----IKLISVDNNLSRLNMISE 173
Q AAPLL D+ + VLDAC+APGGKT HLLE A +++ +++ +++R I E
Sbjct: 193 QQAAPLLLRGLDLAQPLRVLDACAAPGGKTAHLLEYAGASSPLQVTALEVDVARSVRIHE 252
Query: 174 NLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFY-KNKYFDRILADLPCTGSGVV 232
L RL L+A ++++D ++ ++ + + FD IL D PCT SG+V
Sbjct: 253 TLDRLGLRAQVLVADAAR-------------PQEWWQPHCEGIPFDAILLDAPCTASGIV 299
Query: 233 RRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSK 292
RR+PD+ WLRR+ DI +L+ ++L LW +L+PGG+LL+ TCS++ EE + Q F
Sbjct: 300 RRHPDVRWLRREADIAQLAVQQARLLKALWPLLRPGGRLLYCTCSVFREEGDAQVQSFLA 359
Query: 293 NHKDSIRLNSPGQLLPTV---------NKKQDYDGFFYSLFQK 326
++ D+ L SPG L+P + N D+DGFFY+L QK
Sbjct: 360 HNTDARLLPSPGHLIPGIANNGEVVRDNAPGDHDGFFYALLQK 402
>gi|71278391|ref|YP_266800.1| sun protein [Colwellia psychrerythraea 34H]
gi|71144131|gb|AAZ24604.1| sun protein [Colwellia psychrerythraea 34H]
Length = 440
Score = 233 bits (595), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 135/348 (38%), Positives = 202/348 (58%), Gaps = 42/348 (12%)
Query: 1 MINAILREFLR----KKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVG 56
++NA+LR FLR + ++ K+ +N+P W+I +++ Y + QW+ ILD
Sbjct: 115 LVNAVLRGFLRALEAENKQVNKTDKKIPDPIKYNHPGWFIKKIQQAYSD--QWQAILDAN 172
Query: 57 HKKPPLTLRINQRKTTLISYNKLLKKSGLETTIIGP--LAIKLHTPISISKIPKFFNGFC 114
+KPP+ LR+NQ+ T Y LL+++ +E + P AI+L P+ ++K+P F +G+
Sbjct: 173 QQKPPMWLRVNQQHHTSEQYQALLEEAEIEIAHVEPNSQAIELAKPLDVAKLPGFDDGWV 232
Query: 115 SIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADI-KLISVDNNLSRLNMIS 172
SIQD AAQ AA LLD + VLD C+APGGKTCH++E DI + ++D RL +
Sbjct: 233 SIQDGAAQQAARLLDCQPNDIVLDCCAAPGGKTCHIIEQTPDIASMTAIDIEEGRLTRVH 292
Query: 173 ENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVV 232
ENL RLNL A +I +D + N ++ + FDRIL D PC+G+GV+
Sbjct: 293 ENLDRLNLTANVITADAATQN-----------------WWSGEQFDRILLDAPCSGTGVI 335
Query: 233 RRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSK 292
RR+PDI WLR+ +DI KL +IL+N+W +LKPGG LL+ TCS+ EE+ Q F +
Sbjct: 336 RRHPDIKWLRKADDIDKLVVLQQQILDNIWSLLKPGGTLLYATCSVLPEENSLQISRFIE 395
Query: 293 NHKD----SIRLNSPG--------QLLPTVNKKQDYDGFFYSLFQKRK 328
++D +I N+P QLLP ++ DGF+Y+ K K
Sbjct: 396 QNQDAQLIAINGNTPETDKNAIGWQLLPDA---ENMDGFYYAKLLKLK 440
>gi|386266647|ref|YP_005830139.1| 16S rRNA m5C967 methyltransferase [Haemophilus influenzae R2846]
gi|309973883|gb|ADO97084.1| 16S rRNA m5C967 methyltransferase [Haemophilus influenzae R2846]
Length = 451
Score = 233 bits (595), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 134/340 (39%), Positives = 202/340 (59%), Gaps = 35/340 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
++NA+LR FLR++ EI I + W +P W++N++K YPN W+ I++V ++
Sbjct: 132 LVNAVLRRFLREQDEILA-----IIDKNWQTLHPEWFVNKLKKAYPN---WREIIEVNNQ 183
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLET-TIIGPLAIKLHTPISISKIPKFFNGFCSIQ 117
KPP+ LR+N +K L +Y LL++ G+ + T P A+ L PI++ K+P F G ++Q
Sbjct: 184 KPPMWLRVNSQKNALETYRTLLEEQGISSKTSHHPNALCLDIPIAVQKLPHFEEGAVTVQ 243
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
D +AQ AA LL+ ++ ++LDAC+APGGKT H+LE+A +I++D RL + ENL+
Sbjct: 244 DLSAQWAATLLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLE 303
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RLN +A ++ D SK + + +I K FDRIL D PC+ +GV+RR+P
Sbjct: 304 RLNQQAIVVCGDASKPD--EWLAEIGKSAAK---------FDRILLDAPCSATGVIRRHP 352
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR++ DI +L + KIL+ LW+ LKP G LL+ TCS+ EE+ EQ F H D
Sbjct: 353 DIKWLRKETDIAQLVELQKKILSALWEKLKPNGVLLYATCSVLPEENCEQIQEFLNAHAD 412
Query: 297 SIRLNSP---------GQLLPTVNKKQDYDGFFYSLFQKR 327
+ L+ P Q +P N DGF+Y+ KR
Sbjct: 413 AELLSLPFSDDKSAVGFQFIPQPNSG---DGFYYAKLLKR 449
>gi|451812489|ref|YP_007448943.1| ribosomal RNA small subunit methyltransferase B [Candidatus
Kinetoplastibacterium galatii TCC219]
gi|451778391|gb|AGF49339.1| ribosomal RNA small subunit methyltransferase B [Candidatus
Kinetoplastibacterium galatii TCC219]
Length = 452
Score = 233 bits (595), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 128/333 (38%), Positives = 201/333 (60%), Gaps = 23/333 (6%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA LR FLRK+ ++ + + E+ WNY WWI+ ++ Y + W+ +L + +
Sbjct: 133 LLNAGLRNFLRKRC-FLENMVEDNLEACWNYQRWWIDNLRSAY--YDSWEMMLSLANIPS 189
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPK---FFNGFCSIQ 117
L +R+N R+ S + ++ ++ G I L I ISK+ F G+ +Q
Sbjct: 190 QLAIRVNTRQIDRDSVVSIFLENDIDCRRFGDSGIILQKKI-ISKLDNLVGFSEGWWCVQ 248
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKR 177
DA AQLA +L + GM VLDAC+APGGK HLLE+A+I L+++D + RLN + +NL+R
Sbjct: 249 DAGAQLAGSILGVEDGMSVLDACAAPGGKASHLLELANINLLALDCDEVRLNRMKQNLER 308
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L + N+K ++ D + +++ K FD +LAD+PC+ SG+VR++PD
Sbjct: 309 LRLYSD---------NVKLMHAD----AMDLEKWWDGKLFDAVLADVPCSASGIVRKHPD 355
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLR+++DIKK KI++ LW + PGGK+L+VTCS+++EE QA+ F H D+
Sbjct: 356 IRWLRKESDIKKFVLRQIKIIDALWNTVAPGGKMLYVTCSIFYEECIGQALSFLDRHSDA 415
Query: 298 IRLNSPGQLLPTVNKKQD---YDGFFYSLFQKR 327
I L+SP Q+LP + +DGFFY+LF+K+
Sbjct: 416 IFLDSPAQILPVSCNNDNIVSHDGFFYALFKKK 448
>gi|375110116|ref|ZP_09756352.1| 16S rRNA methyltransferase B [Alishewanella jeotgali KCTC 22429]
gi|374569865|gb|EHR41012.1| 16S rRNA methyltransferase B [Alishewanella jeotgali KCTC 22429]
Length = 430
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 129/336 (38%), Positives = 195/336 (58%), Gaps = 33/336 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR RK E+F + + N+P W I++++ YP QW+ +L +K
Sbjct: 116 LINAVLRNVQRKP-ELFDFSQASSAVQF-NHPGWLISELQQAYPQ--QWQAVLTANQQKA 171
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT---IIGPLAIKLHTPISISKIPKFFNGFCSIQ 117
PL LR+NQ++ + Y + L+++G+ + P+AIKL I+ +P + G+ S+Q
Sbjct: 172 PLWLRVNQQQISAADYLQALQQAGISASQPFAYLPVAIKLDQACDITTLPGYAAGWFSVQ 231
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLK 176
DAAAQ AA L G VLDACSAPGGK+CHLLE ++L ++D + RL ++ENL+
Sbjct: 232 DAAAQHAALFLAPEPGEQVLDACSAPGGKSCHLLEQTPGLQLTALDRDAQRLQRVTENLQ 291
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L+A ++ +D+ +D +++ + FDRIL D+PC+ +GV+RR+P
Sbjct: 292 RLQLQARVVAADV---------LDTAS-------WWQGELFDRILLDVPCSATGVIRRHP 335
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR+K DI L++ +IL W++LKPGG LL+ TCS+ E+ Q F D
Sbjct: 336 DIRWLRKKTDIAPLTELQQQILQCAWRLLKPGGTLLYATCSVLPAENSAQLTQFLAQQND 395
Query: 297 SIRLNSPG------QLLPTVNKKQDYDGFFYSLFQK 326
+ L P Q+LP +QD DGFFY+L K
Sbjct: 396 ASLLPLPELGSSSWQILP---GEQDMDGFFYALLHK 428
>gi|421564430|ref|ZP_16010229.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM3081]
gi|402346027|gb|EJU81131.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM3081]
Length = 419
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 126/326 (38%), Positives = 188/326 (57%), Gaps = 27/326 (8%)
Query: 3 NAILREFLRKKGEIFKS-KMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
NAILR FLR++ ++ S K ++ + N P+WW+ +K YP W NI PP
Sbjct: 118 NAILRRFLRERDKLAASCKKDDV--AKHNLPLWWVAYLKNHYPK--HWHNITAALQSHPP 173
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+TLR+N+R SY + L + G+ + A+ L + ++++P F +G S+QD A
Sbjct: 174 MTLRVNRRHGNAESYLEKLAEEGIAAKALDEYAVTLEEAVPVNRLPGFSDGMVSVQDFGA 233
Query: 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181
Q AA LL+ + G +LDAC+APGGKT H+LE+AD ++ ++D + RL + +N+ RL +
Sbjct: 234 QQAAYLLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQ 293
Query: 182 -ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A+ +D + +Y K FD ILAD+PCT SGV RRNPD+ W
Sbjct: 294 TASAACADARDLAA----------------WYDGKPFDAILADVPCTASGVARRNPDVKW 337
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR D K ++ +L+ LW++LK GG++LF TCS++ EE++ Q F H D+ +
Sbjct: 338 LRRPTDAAKTARQQEALLDALWQVLKSGGRMLFATCSVFVEENDGQLQKFLSRHNDAEPI 397
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQK 326
S LLP NK Q DGF+Y+L QK
Sbjct: 398 ESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|397168812|ref|ZP_10492248.1| 16S rRNA methyltransferase B [Alishewanella aestuarii B11]
gi|396089399|gb|EJI86973.1| 16S rRNA methyltransferase B [Alishewanella aestuarii B11]
Length = 430
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 129/336 (38%), Positives = 197/336 (58%), Gaps = 33/336 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR RK S+ + + +N+P W I++++ YP QW+ +L +K
Sbjct: 116 LINAVLRNVQRKPALFDFSQASSAVQ--FNHPGWLISELQQAYPQ--QWQAVLTANQQKA 171
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT---IIGPLAIKLHTPISISKIPKFFNGFCSIQ 117
PL LR+NQ++ + +Y K L ++G+ + P+AIKL I+ +P + G+ S+Q
Sbjct: 172 PLWLRVNQQQISPDAYLKALDEAGIAASQPFAYLPVAIKLEQACDITTLPGYAEGWFSVQ 231
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLK 176
DAAAQ AA L ++ VLDACSAPGGKTCHLLE+A ++L ++D + +RL ++ENL
Sbjct: 232 DAAAQHAAFFLAPQASERVLDACSAPGGKTCHLLELAPALQLTALDRDATRLQRVTENLA 291
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A ++ +D+ + +++ + FDRIL D+PC+ +GV+RR+P
Sbjct: 292 RLKLSARVVAADVL----------------DTASWWQGELFDRILLDVPCSATGVIRRHP 335
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR+K DI L+ +IL W++LKPGG LL+ TCS+ E+ Q F D
Sbjct: 336 DIRWLRKKADIAPLTVLQQQILQCAWQLLKPGGTLLYATCSVLPAENSAQLTQFLAQQAD 395
Query: 297 SIRLNSPG------QLLPTVNKKQDYDGFFYSLFQK 326
+ ++ P Q+LP +QD DGFFY+L QK
Sbjct: 396 AQQVLLPELGVTSWQILP---GEQDMDGFFYALLQK 428
>gi|16272567|ref|NP_438784.1| sun protein [Haemophilus influenzae Rd KW20]
gi|260581533|ref|ZP_05849340.1| ribosomal RNA small subunit methyltransferase B [Haemophilus
influenzae RdAW]
gi|1169716|sp|P44788.1|RSMB_HAEIN RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|1573620|gb|AAC22284.1| sun protein (sun) [Haemophilus influenzae Rd KW20]
gi|260091807|gb|EEW75763.1| ribosomal RNA small subunit methyltransferase B [Haemophilus
influenzae RdAW]
Length = 451
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 133/340 (39%), Positives = 201/340 (59%), Gaps = 35/340 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
++NA+LR FLR++ EI I + W +P W++N++K YPN W+ I++ ++
Sbjct: 132 LVNAVLRRFLREQDEILA-----IIDKNWQTLHPEWFVNKLKKAYPN---WREIIEANNQ 183
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLET-TIIGPLAIKLHTPISISKIPKFFNGFCSIQ 117
KPP+ LR+N +K L +Y LL++ G+ + T P A+ L PI++ K+P F G ++Q
Sbjct: 184 KPPMWLRVNSQKNALETYRTLLEEQGVSSKTSHHPNALCLDIPIAVQKLPHFEEGAVTVQ 243
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
D +AQ AA LL+ ++ ++LDAC+APGGKT H+LE+A +I++D RL + ENL+
Sbjct: 244 DLSAQWAATLLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLE 303
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RLN +A ++ D SK + + +I K FDRIL D PC+ +GV+RR+P
Sbjct: 304 RLNQQAIVVCGDASKPD--EWLAEIGKSAAK---------FDRILLDAPCSATGVIRRHP 352
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR++ DI +L + KIL+ LW+ LKP G LL+ TCS+ EE+ EQ F H D
Sbjct: 353 DIKWLRKETDIAQLVELQKKILSALWEKLKPNGVLLYATCSVLPEENCEQIQAFLNAHAD 412
Query: 297 SIRLNSP---------GQLLPTVNKKQDYDGFFYSLFQKR 327
+ L+ P Q +P N DGF+Y+ KR
Sbjct: 413 AELLSLPFSDDKSAVGFQFIPQPNSG---DGFYYAKLLKR 449
>gi|386826941|ref|ZP_10114048.1| ribosomal RNA small subunit methyltransferase RsmB [Beggiatoa alba
B18LD]
gi|386427825|gb|EIJ41653.1| ribosomal RNA small subunit methyltransferase RsmB [Beggiatoa alba
B18LD]
Length = 444
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 120/337 (35%), Positives = 200/337 (59%), Gaps = 29/337 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR LR++ + + + S + +P WW+ + + + + W+ I ++ P
Sbjct: 120 LVNAVLRACLRQQTALLEI-VEQAPVSRFAHPAWWLEKFQQDWAD--NWQAIAQANNQHP 176
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTII--GPLAIKLHTPISISKIPKFFNGFCSIQD 118
PLTLR+N+RKT Y LL+ G++ T + I L + + ++P F G+ S+QD
Sbjct: 177 PLTLRVNERKTQRADYLALLQTHGIQATPVPFTQTGIFLENALDVQQLPYFQQGWISVQD 236
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKR 177
AAQLAAPLLD+++GM VLDAC+APGGKT HLLE ++ +L+++DN ++R++ + + L+R
Sbjct: 237 GAAQLAAPLLDVQTGMRVLDACAAPGGKTAHLLECSNPCELVAIDNQMARVDTMRQGLQR 296
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L AT++ +D ++ + FDRIL D+PC+ SGV+RR+PD
Sbjct: 297 LELVATVLCAD----------------AGEPATWWDGQLFDRILLDVPCSASGVIRRHPD 340
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I LR+ NDI L ++L +W +LKP GKLL+ TCS++ +E+ Q F ++H D+
Sbjct: 341 IKHLRQANDISALLAQQARLLTVIWSLLKPNGKLLYATCSVFSQENHLQLQHFLQSHPDA 400
Query: 298 IRL---NSPGQLLPT----VNKKQDYDGFFYSLFQKR 327
+ + G LP ++ + ++DGF+Y+ K+
Sbjct: 401 LAVPLKAEWGHALPVGRQILSGEFNFDGFYYACLVKQ 437
>gi|417844298|ref|ZP_12490343.1| Ribosomal RNA small subunit methyltransferase B [Haemophilus
haemolyticus M21639]
gi|341956929|gb|EGT83344.1| Ribosomal RNA small subunit methyltransferase B [Haemophilus
haemolyticus M21639]
Length = 450
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 133/339 (39%), Positives = 200/339 (58%), Gaps = 35/339 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
++NA+LR FLR++ EI I + W +P W++N++K YPN W+ I++ ++
Sbjct: 132 LVNAVLRRFLREQDEILA-----IIDKNWQTLHPEWFVNKLKKAYPN---WREIIEANNQ 183
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLET-TIIGPLAIKLHTPISISKIPKFFNGFCSIQ 117
KPP+ LR+N +K TL +Y LL++ G+ T P A+ L PI++ K+P F G ++Q
Sbjct: 184 KPPMWLRVNSQKNTLETYRTLLEEQGISAKTSRHPNALCLDIPIAVQKLPHFEEGAVTVQ 243
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
D +AQ AA LL+ ++ ++LDAC+APGGKT H+LE+A +I++D RL + ENL
Sbjct: 244 DLSAQWAATLLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVEAHRLKRVEENLA 303
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RLN +A ++ D SK + + +I K FDRIL D PC+ +GV+RR+P
Sbjct: 304 RLNQQAIVVCGDASKPD--EWLAEIGKSAVK---------FDRILLDAPCSATGVIRRHP 352
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR++ DI +L + KIL+ LW+ LKP G LL+ TCS+ EE+ EQ F H D
Sbjct: 353 DIKWLRKETDIAQLVELQKKILSALWEKLKPNGVLLYATCSVLPEENCEQIQAFLNAHAD 412
Query: 297 SIRLNSP---------GQLLPTVNKKQDYDGFFYSLFQK 326
+ L+ P Q +P N DGF+Y+ +K
Sbjct: 413 AELLSLPFGDDKSAVGFQFIPQPNSG---DGFYYAKLRK 448
>gi|326319222|ref|YP_004236894.1| sun protein [Acidovorax avenae subsp. avenae ATCC 19860]
gi|323376058|gb|ADX48327.1| sun protein [Acidovorax avenae subsp. avenae ATCC 19860]
Length = 461
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 120/343 (34%), Positives = 196/343 (57%), Gaps = 32/343 (9%)
Query: 2 INAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
+NA LR FLR++ + + + + WN+P WWI +++ +P QW+ IL + + P
Sbjct: 132 VNACLRRFLRERDALVAATESD-PVARWNHPAWWIERLRKDHPG--QWEQILRANNAQAP 188
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+ LRI++ K + Y L+ +G++ + + L +P + ++P F +G+ S+QD AA
Sbjct: 189 MALRIHRGKVDMAGYLAALEAAGMKAWPVTDTGLVLESPQPVQRLPGFADGWVSVQDLAA 248
Query: 122 QLAAPLL----DIRSGMYVLDACSAPGGKTCHLLEIAD----IKLISVDNNLSRLNMISE 173
Q AAPLL D+ + VLDAC+APGGKT HLLE A + + +++ + R I E
Sbjct: 249 QQAAPLLLSGLDLGRPLRVLDACAAPGGKTAHLLEYAGAGSPVHVTALEIDPLRSARIGE 308
Query: 174 NLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVR 233
L+RL L+A ++++D + D ++ + FD IL D PCT SG+VR
Sbjct: 309 TLQRLGLQAQVLVADAGRPE------DWWQQACG------GEPFDAILLDAPCTASGIVR 356
Query: 234 RNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKN 293
R+PD+ WLRR DI +L+ ++L+ LW +L+PGG++L+ TCS++ E ++ F N
Sbjct: 357 RHPDVRWLRRPGDIAQLATQQARLLSTLWPLLRPGGRMLYCTCSVFRAEGDDTVQSFLAN 416
Query: 294 HKDSIRLNSPGQLLP---------TVNKKQDYDGFFYSLFQKR 327
+ D+ L SPG LLP N +++DGFFY+L ++
Sbjct: 417 NNDAHLLPSPGHLLPRDPGDGGSVRENPSREHDGFFYALLGRQ 459
>gi|260583337|ref|ZP_05851110.1| ribosomal RNA small subunit methyltransferase B [Haemophilus
influenzae NT127]
gi|260093608|gb|EEW77523.1| ribosomal RNA small subunit methyltransferase B [Haemophilus
influenzae NT127]
Length = 451
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 133/340 (39%), Positives = 201/340 (59%), Gaps = 35/340 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
++NA+LR FLR++ EI I + W +P W++N++K YPN W+ I++ ++
Sbjct: 132 LVNAVLRRFLREQDEILA-----IIDKNWQTLHPEWFVNKLKKAYPN---WREIIEANNQ 183
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLET-TIIGPLAIKLHTPISISKIPKFFNGFCSIQ 117
KPP+ LR+N +K L +Y LL++ G+ + T P A+ L PI++ K+P F G ++Q
Sbjct: 184 KPPMWLRVNSQKNALETYRTLLEEQGISSKTSHHPNALCLDIPIAVQKLPHFEEGAVTVQ 243
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
D +AQ AA LL+ ++ ++LDAC+APGGKT H+LE+A +I++D RL + ENL+
Sbjct: 244 DLSAQWAATLLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVETHRLKRVEENLE 303
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RLN +A ++ D SK + + +I K FDRIL D PC+ +GV+RR+P
Sbjct: 304 RLNQQAIVVCGDASKPD--EWLAEIGKSAVK---------FDRILLDSPCSATGVIRRHP 352
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR++ DI +L + KIL+ LW+ LKP G LL+ TCS+ EE+ EQ F H D
Sbjct: 353 DIKWLRKETDIAQLVELQKKILSALWEKLKPNGVLLYATCSVLPEENCEQIQAFLNAHAD 412
Query: 297 SIRLNSP---------GQLLPTVNKKQDYDGFFYSLFQKR 327
+ L+ P Q +P N DGF+Y+ KR
Sbjct: 413 AELLSLPFSDDKSAVGFQFIPQPNSG---DGFYYAKLLKR 449
>gi|342903783|ref|ZP_08725588.1| Ribosomal RNA small subunit methyltransferase B [Haemophilus
haemolyticus M21621]
gi|341954453|gb|EGT80933.1| Ribosomal RNA small subunit methyltransferase B [Haemophilus
haemolyticus M21621]
Length = 450
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 132/340 (38%), Positives = 202/340 (59%), Gaps = 35/340 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
++NA+LR FLR++ EI I + W +P W++N++K YPN W+ I++ ++
Sbjct: 132 LVNAVLRRFLREQDEILA-----IIDKNWQTLHPEWFVNKLKKAYPN---WREIIEANNQ 183
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLET-TIIGPLAIKLHTPISISKIPKFFNGFCSIQ 117
KPP+ LR+N +K +L +Y LL++ G+ T P A+ L PI++ K+P F G ++Q
Sbjct: 184 KPPMWLRVNSQKNSLETYRTLLEEQGISAKTSPHPNALCLDIPIAVQKLPHFEEGAVTVQ 243
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
D +AQ AA LL+ ++ ++LDAC+APGGKT H+LE+A +I++D RL + ENL+
Sbjct: 244 DLSAQWAATLLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLE 303
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RLN +A ++ D S+ + + +I K FDRIL D PC+ +GV+RR+P
Sbjct: 304 RLNQQAIVVCGDASQPD--EWLAEIGKSAVK---------FDRILLDAPCSATGVIRRHP 352
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR++ DI +L + KIL+ LW+ LKP G LL+ TCS+ EE+ EQ F H D
Sbjct: 353 DIKWLRKETDIAQLVELQKKILSALWEKLKPNGVLLYATCSVLPEENCEQIQAFLNAHAD 412
Query: 297 SIRLNSP---------GQLLPTVNKKQDYDGFFYSLFQKR 327
+ L+ P Q +P N DGF+Y+ +KR
Sbjct: 413 AELLSLPFSDDKSAVGFQFIPQPNSG---DGFYYAKLRKR 449
>gi|377579903|ref|ZP_09808861.1| ribosomal RNA small subunit methyltransferase B [Escherichia
hermannii NBRC 105704]
gi|377538770|dbj|GAB54026.1| ribosomal RNA small subunit methyltransferase B [Escherichia
hermannii NBRC 105704]
Length = 430
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 128/342 (37%), Positives = 202/342 (59%), Gaps = 44/342 (12%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LREF R++ + + H+S + +P W + +++ YP QW+ I++ +++P
Sbjct: 117 LINGVLREFQRQQEALLNE--FAQHDSRFLHPSWLVKRLRTAYPA--QWEEIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG------PLAIKLHTPISISKIPKFFNGFC 114
P+ LR+N++ + ++ LL++SG I G P A++L TP+S+ +P F G+
Sbjct: 173 PMWLRVNRQHHSRDAWLALLEESG----ITGFPHSDYPDAVRLETPVSVHTLPGFEQGWV 228
Query: 115 SIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISE 173
++QDA+AQ PLLD + G +LD C+APGGKT H+LE A +++VD + RL+ + E
Sbjct: 229 TVQDASAQGCIPLLDPQDGEDILDLCAAPGGKTTHILEAAPHANVMAVDIDEQRLSRVYE 288
Query: 174 NLKRLNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGV 231
NLKRL + AT+ K+ + R+ ++ +NK FDRIL D PC+ +GV
Sbjct: 289 NLKRLGMTATV------------------KQGDGRYPQQWCENKQFDRILLDAPCSATGV 330
Query: 232 VRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFS 291
+RR+PDI WLRR DI +L+ +IL+ +W +LKPGG LL+ TCS+ EE+ +Q F
Sbjct: 331 IRRHPDIKWLRRDRDISELAALQSQILDAIWPLLKPGGTLLYATCSVLPEENTQQVAAFL 390
Query: 292 KNHKDSIRL-----NSPG-QLLPTVNKKQDYDGFFYSLFQKR 327
K D+ +SPG Q LP + DGFFY+ K+
Sbjct: 391 KRTPDAQLTLTGTPDSPGIQNLPASTEG---DGFFYAKLLKK 429
>gi|319775433|ref|YP_004137921.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Haemophilus
influenzae F3047]
gi|317450024|emb|CBY86238.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Haemophilus
influenzae F3047]
Length = 451
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 132/340 (38%), Positives = 201/340 (59%), Gaps = 35/340 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
++NA+LR FLR++ EI I + W +P W++N++K YPN W+ I++ ++
Sbjct: 132 LVNAVLRRFLREQDEILA-----IIDKNWQTLHPEWFVNKLKKAYPN---WREIIEANNQ 183
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLET-TIIGPLAIKLHTPISISKIPKFFNGFCSIQ 117
KPP+ +R+N +K L +Y LL++ G+ + T P A+ L PI++ K+P F G ++Q
Sbjct: 184 KPPMWIRVNSQKNALETYRSLLEEQGVSSKTSHHPNALCLDIPIAVQKLPHFEEGAVTVQ 243
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
D +AQ AA LL+ ++ ++LDAC+APGGKT H+LE+A +I++D RL + ENL+
Sbjct: 244 DLSAQWAATLLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLE 303
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RLN +A ++ D SK + + +I K FDRIL D PC+ +GV+RR+P
Sbjct: 304 RLNQQAIVVCGDASKPD--EWLAEIGKSAAK---------FDRILLDAPCSATGVIRRHP 352
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR++ DI +L + KIL+ LW+ LKP G LL+ TCS+ EE+ EQ F H D
Sbjct: 353 DIKWLRKETDIAQLVELQKKILSALWEKLKPNGVLLYATCSVLPEENYEQIQEFLNAHAD 412
Query: 297 SIRLNSP---------GQLLPTVNKKQDYDGFFYSLFQKR 327
+ L+ P Q +P N DGF+Y+ KR
Sbjct: 413 AELLSLPFSDDTSAVGFQFIPQPNSG---DGFYYAKLLKR 449
>gi|294669086|ref|ZP_06734172.1| ribosomal RNA small subunit methyltransferase B [Neisseria elongata
subsp. glycolytica ATCC 29315]
gi|291309078|gb|EFE50321.1| ribosomal RNA small subunit methyltransferase B [Neisseria elongata
subsp. glycolytica ATCC 29315]
Length = 420
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 123/326 (37%), Positives = 187/326 (57%), Gaps = 25/326 (7%)
Query: 3 NAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPPL 62
NAILR FLR+K E ++ + +N+P WW++ ++ YP W NI+ + PPL
Sbjct: 118 NAILRRFLREK-EQLNAQCRRDDTAKYNFPGWWLDYMRQAYPK--HWHNIVTAANGHPPL 174
Query: 63 TLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAAQ 122
TLRIN+R Y + L G+ ++ A+ L + ++++P F +G S+QD AQ
Sbjct: 175 TLRINRRHGNAEGYLEKLAAEGIAGKVLDEYAVILDEAVPVNRLPGFSDGLVSVQDFGAQ 234
Query: 123 LAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK- 181
AA +L G +LDAC+APGGK+ H+LE+A+ L ++D + RL +++NL RL +
Sbjct: 235 QAAYILKPADGERILDACAAPGGKSGHILELANCSLTALDIDEGRLKRVADNLSRLGFQT 294
Query: 182 ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWL 241
A+L +D + ++ +Y FD +LAD+PCT SGV +RNPDI WL
Sbjct: 295 ASLHRADAADLS----------------SWYDGNPFDAVLADVPCTASGVTKRNPDIKWL 338
Query: 242 RRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLN 301
RR D K ++ +L+NLW +LKPGG++L TCSL+ EE++ Q F + H D+
Sbjct: 339 RRPADGGKTARQQETMLDNLWSVLKPGGRMLLATCSLFHEENDGQLQRFLRRHPDAACTE 398
Query: 302 SPGQLLPTVNKKQDYDGFFYSLFQKR 327
S LLP K DGF+Y+L +K+
Sbjct: 399 SL-TLLP----KHTQDGFYYALIRKQ 419
>gi|309751781|gb|ADO81765.1| 16S rRNA m5C967 methyltransferase [Haemophilus influenzae R2866]
Length = 450
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 133/340 (39%), Positives = 199/340 (58%), Gaps = 35/340 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
++NA+LR FLR++ EI I + W +P W++N++K YPN W+ I++ ++
Sbjct: 132 LVNAVLRRFLREQDEILA-----ITDKNWQTLHPEWFVNKLKKAYPN---WREIIEANNQ 183
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLET-TIIGPLAIKLHTPISISKIPKFFNGFCSIQ 117
KPP+ LR+N +K L +Y LL++ G+ + T P A+ L PI++ K+P F G ++Q
Sbjct: 184 KPPMWLRVNSQKNALETYRTLLEEQGVSSKTSHHPNALCLDIPIAVQKLPHFEEGVVTVQ 243
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
D +AQ AA LL+ ++ ++LDAC+APGGKT H+LE+A +I++D RL + ENL
Sbjct: 244 DLSAQWAAMLLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLA 303
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RLN +A ++ D SK + + +I K FDRIL D PC+ +GV+RR+P
Sbjct: 304 RLNQQAIVVCGDASKPD--EWLAEIGKSAVK---------FDRILLDAPCSATGVIRRHP 352
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR++ DI +L + KIL+ LW+ LKP G LL+ TCS+ EE+ EQ F H D
Sbjct: 353 DIKWLRKETDIAQLVELQKKILSALWEKLKPNGVLLYATCSVLPEENCEQIQAFLNAHAD 412
Query: 297 SIRLNSPG---------QLLPTVNKKQDYDGFFYSLFQKR 327
+ L P Q +P N DGF+Y+ KR
Sbjct: 413 AELLPLPVSDDKSAVGFQFIPQPNSG---DGFYYAKLLKR 449
>gi|378696823|ref|YP_005178781.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Haemophilus
influenzae 10810]
gi|301169342|emb|CBW28941.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Haemophilus
influenzae 10810]
Length = 451
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 132/340 (38%), Positives = 201/340 (59%), Gaps = 35/340 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
++NA+LR FLR++ EI I + W +P W++N++K YPN W+ I++ ++
Sbjct: 132 LVNAVLRRFLREQDEILA-----IIDKNWQTLHPEWFVNKLKKAYPN---WREIIEANNQ 183
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLET-TIIGPLAIKLHTPISISKIPKFFNGFCSIQ 117
KPP+ LR+N +K L +Y LL++ G+ + T P A+ L PI++ K+P F G ++Q
Sbjct: 184 KPPMWLRVNSQKNALETYRTLLEEQGVSSKTSHHPNALCLDIPIAVQKLPHFEEGAVTVQ 243
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
D +AQ AA LL+ ++ ++LDAC+APGGKT H+LE+A ++++D RL + ENL+
Sbjct: 244 DLSAQWAATLLEPKNEEWILDACAAPGGKTTHILELAPQANVVALDVESHRLKRVEENLE 303
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RLN +A ++ D SK + + +I K FDRIL D PC+ +GV+RR+P
Sbjct: 304 RLNQQAIVVCGDASKPD--EWLAEIGKSAAK---------FDRILLDSPCSATGVIRRHP 352
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR++ DI +L + KIL+ LW+ LKP G LL+ TCS+ EE+ EQ F H D
Sbjct: 353 DIKWLRKETDIAQLVELQKKILSALWEKLKPNGVLLYATCSVLPEENCEQIQEFLNAHAD 412
Query: 297 SIRLNSP---------GQLLPTVNKKQDYDGFFYSLFQKR 327
+ L+ P Q +P N DGF+Y+ KR
Sbjct: 413 AELLSLPFSDDKSAVGFQFIPQPNSG---DGFYYAKLLKR 449
>gi|329122539|ref|ZP_08251122.1| RNA methyltransferase Sun [Haemophilus aegyptius ATCC 11116]
gi|327473144|gb|EGF18568.1| RNA methyltransferase Sun [Haemophilus aegyptius ATCC 11116]
Length = 451
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 132/340 (38%), Positives = 200/340 (58%), Gaps = 35/340 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
++NA+LR FLR++ EI I + W +P W++N++K YPN W+ I++ ++
Sbjct: 132 LVNAVLRRFLREQDEILA-----IIDKNWQTLHPEWFVNKLKKAYPN---WREIIEANNQ 183
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLET-TIIGPLAIKLHTPISISKIPKFFNGFCSIQ 117
KPP+ +R+N +K L +Y LL++ G+ + T P A+ L PI++ K+P F G ++Q
Sbjct: 184 KPPMWIRVNSQKNALETYRSLLEEQGVSSKTSHHPNALCLDIPIAVQKLPHFEEGAVTVQ 243
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
D +AQ AA LL+ ++ ++LDAC+APGGKT H+LE+A +I++D RL + ENL
Sbjct: 244 DLSAQWAATLLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLA 303
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RLN +A ++ D SK + + +I K FDRIL D PC+ +GV+RR+P
Sbjct: 304 RLNQQAIVVCGDASKPD--EWLAEIGKSAAK---------FDRILLDSPCSATGVIRRHP 352
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR++ DI +L + KIL+ LW+ LKP G LL+ TCS+ EE+ EQ F H D
Sbjct: 353 DIKWLRKETDIAQLVELQKKILSALWEKLKPNGVLLYATCSVLPEENCEQIQAFLNAHTD 412
Query: 297 SIRLNSP---------GQLLPTVNKKQDYDGFFYSLFQKR 327
+ L+ P Q +P N DGF+Y+ KR
Sbjct: 413 AELLSLPFSDDKSAVGFQFIPQPNSG---DGFYYAKLLKR 449
>gi|229845581|ref|ZP_04465708.1| sun protein [Haemophilus influenzae 6P18H1]
gi|229811516|gb|EEP47218.1| sun protein [Haemophilus influenzae 6P18H1]
Length = 450
Score = 230 bits (587), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 132/340 (38%), Positives = 200/340 (58%), Gaps = 35/340 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
++NA+LR FLR++ EI I + W +P W++N++K YPN W+ I++ ++
Sbjct: 132 LVNAVLRRFLREQDEILA-----IIDKNWQTLHPEWFVNKLKKAYPN---WREIIEANNQ 183
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLET-TIIGPLAIKLHTPISISKIPKFFNGFCSIQ 117
KPP+ LR+N +K L +Y LL++ G+ T P A+ L PI++ K+P F G ++Q
Sbjct: 184 KPPMWLRVNSQKNALETYRTLLEEQGISAKTSHHPNALCLDIPIAVQKLPHFEEGAVTVQ 243
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
D +AQ AA LL+ ++ ++LDAC+APGGKT H+LE+A +I++D RL + ENL+
Sbjct: 244 DLSAQWAATLLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLE 303
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RLN +A ++ D S+ + + +I K FDRIL D PC+ +GV+RR+P
Sbjct: 304 RLNQQAIVVCGDASQPD--EWLAEIGKSAVK---------FDRILLDAPCSATGVIRRHP 352
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR++ DI +L + KIL+ LW+ LKP G LL+ TCS+ EE+ EQ F H D
Sbjct: 353 DIKWLRKETDIAQLVELQKKILSALWEKLKPNGVLLYATCSVLPEENCEQIQAFLNAHAD 412
Query: 297 SIRLNSP---------GQLLPTVNKKQDYDGFFYSLFQKR 327
+ L+ P Q +P N DGF+Y+ KR
Sbjct: 413 AELLSLPFSDDKSAVGFQFIPQPNSG---DGFYYAKLLKR 449
>gi|145635940|ref|ZP_01791626.1| methionyl-tRNA formyltransferase [Haemophilus influenzae PittAA]
gi|145266799|gb|EDK06817.1| methionyl-tRNA formyltransferase [Haemophilus influenzae PittAA]
Length = 451
Score = 230 bits (587), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 132/340 (38%), Positives = 200/340 (58%), Gaps = 35/340 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
++NA+LR FLR++ EI I + W +P W++N++K YPN W+ I++ ++
Sbjct: 132 LVNAVLRRFLREQDEILA-----IIDKNWQTLHPEWFVNKLKKAYPN---WREIIEANNQ 183
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLET-TIIGPLAIKLHTPISISKIPKFFNGFCSIQ 117
KPP+ LR+N +K L +Y LL++ G+ T P A+ L PI++ K+P F G ++Q
Sbjct: 184 KPPMWLRVNSQKNALETYRTLLEEQGISAKTSHHPNALCLDIPIAVQKLPHFEEGAVTVQ 243
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
D +AQ AA LL+ ++ ++LDAC+APGGKT H+LE+A +I++D RL + ENL+
Sbjct: 244 DLSAQWAATLLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLE 303
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RLN +A ++ D S+ + + +I K FDRIL D PC+ +GV+RR+P
Sbjct: 304 RLNQQAIVVCGDASQPD--EWLAEIGKSAVK---------FDRILLDAPCSATGVIRRHP 352
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR++ DI +L + KIL+ LW+ LKP G LL+ TCS+ EE+ EQ F H D
Sbjct: 353 DIKWLRKETDIAQLVELQKKILSALWEKLKPNGVLLYATCSVLPEENCEQIQAFLNAHAD 412
Query: 297 SIRLNSP---------GQLLPTVNKKQDYDGFFYSLFQKR 327
+ L+ P Q +P N DGF+Y+ KR
Sbjct: 413 AELLSLPFSDDKSAVGFQFIPQPNSG---DGFYYAKLLKR 449
>gi|440232807|ref|YP_007346600.1| 16S rRNA m(5)C-967 methyltransferase [Serratia marcescens FGI94]
gi|440054512|gb|AGB84415.1| 16S rRNA m(5)C-967 methyltransferase [Serratia marcescens FGI94]
Length = 423
Score = 230 bits (587), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 121/327 (37%), Positives = 195/327 (59%), Gaps = 30/327 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E + N H+S + +P W + +++ YP QW+ I+D ++KP
Sbjct: 117 LINGVLRQFQRQQ-EALMQRAAN-HDSRYLHPSWLLKRIQQAYPE--QWQQIVDANNQKP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R + Y +LL ++G+E G P A++L TP ++S +P F +G+ ++QD
Sbjct: 173 PMWLRVNRRHHSRDDYLQLLAQAGIEAVAHGEYPDAVRLLTPCAVSSLPGFADGWATVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LLD + G +LD C+APGGKT H+LE A +++VD + RL+ + ENL+R
Sbjct: 233 ASAQGCVDLLDPQDGEQILDLCAAPGGKTTHILEAAPQAHVMAVDIDEQRLSRVKENLQR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L A + K+ + R ++ +K FDRIL D PC+ +GV+RR+
Sbjct: 293 LQCHAEV------------------KQGDGRTPQQWCGDKQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR +DI +L+ +IL+ +W LK GG +++ TCS+ +E+ +Q F + H
Sbjct: 335 PDIKWLRRDSDIAELANLQAEILDAIWPHLKSGGVMVYATCSILPQENSQQLQAFLQRHN 394
Query: 296 DSIRLNSPGQLLPTVNKKQDYDGFFYS 322
D+ + Q LP +D DGFFY+
Sbjct: 395 DASLVGVERQNLP---HPEDGDGFFYA 418
>gi|431930626|ref|YP_007243672.1| ribosomal RNA small subunit methyltransferase RsmB [Thioflavicoccus
mobilis 8321]
gi|431828929|gb|AGA90042.1| ribosomal RNA small subunit methyltransferase RsmB [Thioflavicoccus
mobilis 8321]
Length = 461
Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 119/339 (35%), Positives = 193/339 (56%), Gaps = 26/339 (7%)
Query: 2 INAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
+NA+LR +LR++ + +++ +P W +++ +P W ILD + PP
Sbjct: 132 VNALLRRYLREQASL-EARAARQPGVDGLFPQWLQDKLARAWPE--HWPAILDASNAPPP 188
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQDA 119
+TLR+N+ +T+ +Y + L +GL + P A+ L P+ ++++P F G S+QD+
Sbjct: 189 MTLRVNRMRTSRKAYAETLAAAGLTARPVAGAPAALMLDAPVPVARLPGFAAGLVSVQDS 248
Query: 120 AAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKR 177
AQLAA LLD G VLDAC+APGGKT HLLE I L ++D + RL + ENL R
Sbjct: 249 GAQLAAELLDAHPGERVLDACAAPGGKTAHLLERTANRIALTAIDMDPIRLARVHENLAR 308
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L A +++ + ++ + + + + +DRIL D+PC+ +GV+RR+PD
Sbjct: 309 LGLTAKAVVAADAGTLPQETTAEGSPPD------WATQRYDRILLDVPCSATGVIRRHPD 362
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +D++ L+ +IL+ +W +L+PGG+LL+ TCSL EE+E+Q F H D+
Sbjct: 363 IKWLRRASDLRPLAGQQTRILDAVWPLLEPGGRLLYTTCSLLPEENEDQIAAFLARHPDA 422
Query: 298 IRLNSPG----------QLLPTVNKKQDYDGFFYSLFQK 326
+ + Q LPT ++ DGF+++L K
Sbjct: 423 MEVPIEATWGLARRRGRQTLPT---RRGPDGFYFALLGK 458
>gi|389604732|emb|CCA43658.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis alpha522]
Length = 419
Score = 230 bits (586), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 124/326 (38%), Positives = 187/326 (57%), Gaps = 27/326 (8%)
Query: 3 NAILREFLRKKGEIFKS-KMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
NA+LR FLR++ ++ S K ++ + N P+WW+ +K YP W NI PP
Sbjct: 118 NAVLRRFLRERDKLVASCKKDDV--AKHNLPLWWVAYLKNHYPK--HWHNIAAALQSHPP 173
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+TLR+N+R SY + L G+ + A+ L + ++++P F +G S+QD A
Sbjct: 174 MTLRVNRRHGNAESYLEKLVAEGIAAKALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGA 233
Query: 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181
Q AA LL+ + G +LDAC+APGGKT H+LE+AD ++ ++D + RL + +N+ RL +
Sbjct: 234 QQAAYLLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQ 293
Query: 182 -ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A+ +D ++ +Y K FD +LAD+PCT SGV RRNPD+ W
Sbjct: 294 TASTACADAQDLSA----------------WYDGKPFDAVLADVPCTASGVARRNPDVKW 337
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR D K ++ +L+ LW+ LK GG++L TCS++ EE++EQ F H D+ +
Sbjct: 338 LRRPTDALKTARQQEALLDALWQTLKQGGRMLLATCSVFVEENDEQLQKFLNRHADAEPI 397
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQK 326
S LLP NK Q DGF+Y+L QK
Sbjct: 398 ESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|260775013|ref|ZP_05883913.1| ribosomal RNA small subunit methyltransferase B [Vibrio
coralliilyticus ATCC BAA-450]
gi|260609103|gb|EEX35262.1| ribosomal RNA small subunit methyltransferase B [Vibrio
coralliilyticus ATCC BAA-450]
Length = 426
Score = 230 bits (586), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 121/334 (36%), Positives = 198/334 (59%), Gaps = 30/334 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R + E+ M + + + +P W + ++ YP QW++I++ + K
Sbjct: 113 LINAVLRNYQRNQEELDAHAMSH-NAGKYGHPSWLLKLLQDAYPQ--QWQDIIEANNSKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+NQ+ + Y +LLK ++++I A+KL P ++K+P F G+ S+QD
Sbjct: 170 PMWLRVNQQHHSRDEYQQLLKNENIDSSIHSEASDALKLAAPCDVTKLPGFEKGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQL+ L + G +LD C+APGGKT H+LE D +++++D + SRL + +NL+R
Sbjct: 230 AAAQLSINYLTPKDGELILDCCAAPGGKTAHILERTQDAQIVAIDCDDSRLKRVHDNLQR 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L LKA +I D K +++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 290 LQLKAQVICGDARKPK----------------DWWQGEQFDRILLDAPCSATGVIRRHPD 333
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIF----SKN 293
I WLRR +DI L+K +IL+ +W+ LKPGG L++ TCS+ +E+ EQ F +
Sbjct: 334 IKWLRRGDDIAALAKLQSEILDAMWQQLKPGGTLVYATCSITPQENSEQVKAFLARTANA 393
Query: 294 HKDSIRLNSPG-QLLPTVNKKQDYDGFFYSLFQK 326
+ +++PG Q+LP ++D DGF+Y++ K
Sbjct: 394 QLEGSPVDNPGRQVLPG---EEDMDGFYYAILTK 424
>gi|319945038|ref|ZP_08019300.1| RNA methyltransferase Sun [Lautropia mirabilis ATCC 51599]
gi|319741608|gb|EFV94033.1| RNA methyltransferase Sun [Lautropia mirabilis ATCC 51599]
Length = 491
Score = 230 bits (586), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 116/348 (33%), Positives = 196/348 (56%), Gaps = 25/348 (7%)
Query: 2 INAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
INA LR F R++ + + + E+ +N+P WW+ +V+ +P+ +W+ IL + P
Sbjct: 148 INATLRRFARERASLMAEPLPD--EARFNHPGWWVAKVRKLWPD--RWQEILTASLSRAP 203
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
L+LR N+R+ ++ L+++G+ ++G + L + + +IP F G S+QD A
Sbjct: 204 LSLRANRRQGGQLAAAARLQEAGIGFRLMGQDGLVLDQALPVDRIPGFAEGLMSVQDIGA 263
Query: 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL- 180
Q AA LLD + G +LDAC+APGGKT HLLE+AD ++ ++D + R ++I+ NL+R +
Sbjct: 264 QCAAQLLDPQPGERILDACAAPGGKTAHLLEMADCEVWALDIDPDRASIITNNLQRARVP 323
Query: 181 -------KATLILSDISKINLKKLYID--INKKTNNRFRFYKNKYFDRILADLPCTGSGV 231
+A + + S+ ++ + + ++ + FDRIL D PC+ SG+
Sbjct: 324 LLSQDATEAPVAATPASEQAAGAVWGAHVLAADAGDPESWWDGRPFDRILLDAPCSASGI 383
Query: 232 VRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFS 291
VRR+PD+ W R++ DI S ++L LW +L+PGG LL+ TCS++ EE E+ F+
Sbjct: 384 VRRHPDVLWHRQRRDIATFSATQARLLEKLWPLLRPGGTLLYATCSIFPEEGEKVVSAFA 443
Query: 292 KNHKD-----SIRLNS------PGQLLPTVNKKQDYDGFFYSLFQKRK 328
D +R+ GQLLP ++ ++DGFFY+L K +
Sbjct: 444 SRQADCRWQREVRVPGWADWPQGGQLLPRSDELHEHDGFFYALLSKHQ 491
>gi|333912119|ref|YP_004485851.1| sun protein [Delftia sp. Cs1-4]
gi|333742319|gb|AEF87496.1| sun protein [Delftia sp. Cs1-4]
Length = 465
Score = 230 bits (586), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 125/345 (36%), Positives = 205/345 (59%), Gaps = 33/345 (9%)
Query: 2 INAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
INA LR FLR++ + + + ++ WN+P WWI +++ +P+ W+ IL +++PP
Sbjct: 136 INACLRRFLRER-DALVAATDDQPQAVWNHPAWWIARLRKDHPDH--WQAILQANNEQPP 192
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+TLR+N+++T SY L+ + + + ++L + + +P F G S+QDAAA
Sbjct: 193 MTLRVNRQQTDRQSYQAALQAMDVPSLAVADSGLQLQQALPVQSLPGFDEGLASVQDAAA 252
Query: 122 QLAAPL----LDIRSG--MYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMIS 172
QLAAPL L+ +G + VLDAC+APGGKT HLLE A +++ +++ + R I+
Sbjct: 253 QLAAPLLLQGLEQPAGRALRVLDACAAPGGKTAHLLEYAAPQTLEVTALEIDAERAARIA 312
Query: 173 ENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVV 232
+ L RL L+A ++++D S+ + + D + FD IL D PCT SG+V
Sbjct: 313 DTLGRLRLQARVVVADASRPDQ---WFDAQ---------CGGQRFDAILLDAPCTASGIV 360
Query: 233 RRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSK 292
RR PD+ WLRR++D+++L++ ++L+ LW +L+PGG+LL+ TCS++ EE E Q F
Sbjct: 361 RRQPDVRWLRRESDVRQLAEIQARLLDTLWPLLQPGGRLLYCTCSVFREEGEAQVQAFVT 420
Query: 293 NHKDSIRLNSPGQLLPTVNKKQ---------DYDGFFYSLFQKRK 328
+ ++ L +PG L+P K D+DGFFY+L QK +
Sbjct: 421 RNSEARTLAAPGHLIPGKADKAGMLADNALGDHDGFFYALLQKTR 465
>gi|160895962|ref|YP_001561544.1| sun protein [Delftia acidovorans SPH-1]
gi|160361546|gb|ABX33159.1| sun protein [Delftia acidovorans SPH-1]
Length = 462
Score = 230 bits (586), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 125/345 (36%), Positives = 205/345 (59%), Gaps = 33/345 (9%)
Query: 2 INAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
INA LR FLR++ + + + ++ WN+P WWI +++ +P+ W+ IL +++PP
Sbjct: 133 INACLRRFLRER-DALVAATDDQPQAVWNHPAWWIARLRKDHPDH--WQAILQANNEQPP 189
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+TLR+N+++T SY L+ + + + ++L + + +P F G S+QDAAA
Sbjct: 190 MTLRVNRQQTDRQSYQAALQAMDVPSLAVADSGLQLQQALPVQSLPGFDEGLASVQDAAA 249
Query: 122 QLAAPL----LDIRSG--MYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMIS 172
QLAAPL L+ +G + VLDAC+APGGKT HLLE A +++ +++ + R I+
Sbjct: 250 QLAAPLLLQGLEQPAGRALRVLDACAAPGGKTAHLLEYAAPQTLEVTALEIDAERAARIA 309
Query: 173 ENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVV 232
+ L RL L+A ++++D S+ + + D + FD IL D PCT SG+V
Sbjct: 310 DTLGRLRLQARVVVADASRPDQ---WFDAQ---------CGGQRFDAILLDAPCTASGIV 357
Query: 233 RRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSK 292
RR PD+ WLRR++D+++L++ ++L+ LW +L+PGG+LL+ TCS++ EE E Q F
Sbjct: 358 RRQPDVRWLRRESDVRQLAEIQARLLDTLWPLLQPGGRLLYCTCSVFREEGEAQVQAFVT 417
Query: 293 NHKDSIRLNSPGQLLPTVNKKQ---------DYDGFFYSLFQKRK 328
+ ++ L +PG L+P K D+DGFFY+L QK +
Sbjct: 418 RNSEARTLAAPGHLIPGKADKAGMLADNALGDHDGFFYALLQKTR 462
>gi|421537901|ref|ZP_15984083.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 93003]
gi|402317938|gb|EJU53465.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 93003]
Length = 419
Score = 230 bits (586), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 125/326 (38%), Positives = 186/326 (57%), Gaps = 27/326 (8%)
Query: 3 NAILREFLRKKGEIFKS-KMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
NA+LR FLR++ ++ S K ++ + N P+WW+ +K YP W NI PP
Sbjct: 118 NAVLRRFLRERDKLAASCKKDDV--AKHNLPLWWVAYLKNHYPK--HWHNITAALQSHPP 173
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+TLR+N+R SY + L G+ + A+ L + ++++P F +G S+QD A
Sbjct: 174 MTLRVNRRHGNAESYLEKLAAEGIAAKALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGA 233
Query: 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181
Q AA LL+ + G +LDAC+APGGKT H+LE+AD ++ ++D + RL + +N+ RL +
Sbjct: 234 QQAAYLLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQ 293
Query: 182 -ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A+ +D + +Y K FD ILAD+PCT SGV RRNPD+ W
Sbjct: 294 TASAACADARDLAA----------------WYDGKPFDAILADVPCTASGVARRNPDVKW 337
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR D K ++ +L+ LW+ LK GG++L TCS++ EE++EQ F H D+ +
Sbjct: 338 LRRPTDALKTARQQEALLDALWQTLKQGGRMLLATCSVFVEENDEQLQKFLNRHADAEPI 397
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQK 326
S LLP NK Q DGF+Y+L QK
Sbjct: 398 ESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|91790269|ref|YP_551221.1| sun protein [Polaromonas sp. JS666]
gi|91699494|gb|ABE46323.1| sun protein [Polaromonas sp. JS666]
Length = 445
Score = 230 bits (586), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 130/343 (37%), Positives = 198/343 (57%), Gaps = 36/343 (10%)
Query: 2 INAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
IN LR FLR++ ++ ++ ++ WN+P WWI++V+ +P QW+ IL + + P
Sbjct: 120 INGCLRRFLRERDDLV-ARSEKSPQAVWNHPQWWIDRVRKDHPG--QWQAILQANNSRAP 176
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
L LR+N+RKTT Y L + T +G + L + + +P F G S+QDAAA
Sbjct: 177 LILRVNERKTTQAQYLLALSAVNIAATPVGKQGVILASAQPVPSLPGFAEGHFSVQDAAA 236
Query: 122 QLAAPL----LDIRSGM----YVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISE 173
QLAAPL L+ G +LDAC+APGGKT HLLE+AD ++ ++D + R I++
Sbjct: 237 QLAAPLLLEGLNTGDGQGARPRILDACAAPGGKTAHLLELADCEVTALDIDARRCTRIAQ 296
Query: 174 NLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVR 233
NL RL L+A + ++D + ++ + +D IL D PCT SG+VR
Sbjct: 297 NLGRLGLQAHIEVADAGRPQ----------------DWWDGQPYDGILLDAPCTASGIVR 340
Query: 234 RNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKN 293
R+PD+ WLRR DI +L+ +L LW +LKPGG+LL+ TCS++ E + Q F +
Sbjct: 341 RHPDVRWLRRPTDIAQLAGIQAHLLQALWPLLKPGGRLLYCTCSVFRAEGDNQIQTFVAH 400
Query: 294 HKDSIRLNSPGQLLP------TV---NKKQDYDGFFYSLFQKR 327
H D++ + SPG LLP TV N +++DGF+Y++ +KR
Sbjct: 401 HTDALLMPSPGHLLPQSGAEATVFPDNLMREHDGFYYAILEKR 443
>gi|268602401|ref|ZP_06136568.1| 16S RNA methyltransferase [Neisseria gonorrhoeae PID18]
gi|268604663|ref|ZP_06138830.1| 16S RNA methyltransferase [Neisseria gonorrhoeae PID1]
gi|291042746|ref|ZP_06568487.1| 16S RNA methyltransferase [Neisseria gonorrhoeae DGI2]
gi|268586532|gb|EEZ51208.1| 16S RNA methyltransferase [Neisseria gonorrhoeae PID18]
gi|268588794|gb|EEZ53470.1| 16S RNA methyltransferase [Neisseria gonorrhoeae PID1]
gi|291013180|gb|EFE05146.1| 16S RNA methyltransferase [Neisseria gonorrhoeae DGI2]
Length = 419
Score = 230 bits (586), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 125/325 (38%), Positives = 183/325 (56%), Gaps = 25/325 (7%)
Query: 3 NAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPPL 62
NA+LR FLR++ ++ S N Y N P+WW+ +K YP W NI PP+
Sbjct: 118 NAVLRRFLRERDKLAASCKKNDVAKY-NLPLWWVAYLKNHYPK--HWHNIAAALQSHPPM 174
Query: 63 TLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAAQ 122
TLR+N+R SY + L G+ + A+ L + ++++P F G S+QD AQ
Sbjct: 175 TLRVNRRHGNAESYLEKLVAEGITAKALDEYAVTLEEAVPVNRLPGFAEGLVSVQDFGAQ 234
Query: 123 LAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK- 181
AA LL+ + G +LDAC+APGGKT H+LE+AD ++ ++D + RL + +N+ RL +
Sbjct: 235 QAAYLLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQT 294
Query: 182 ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWL 241
A+ +D + +Y K FD ILAD+PCT SGV RRNPD+ WL
Sbjct: 295 ASAACADARDLAA----------------WYDGKPFDAILADVPCTASGVARRNPDVKWL 338
Query: 242 RRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLN 301
RR D K ++ +L+ LW++LK GG++L TCS++ EE++ Q F H D+ +
Sbjct: 339 RRPTDALKTARQQEALLDALWQVLKQGGRMLLATCSVFVEENDGQLQKFLNRHADAEPIE 398
Query: 302 SPGQLLPTVNKKQDYDGFFYSLFQK 326
S LLP NK Q DGF+Y+L QK
Sbjct: 399 SR-VLLP--NKHQ--DGFYYALIQK 418
>gi|240017576|ref|ZP_04724116.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae FA6140]
gi|240122197|ref|ZP_04735159.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae PID24-1]
Length = 417
Score = 229 bits (585), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 125/325 (38%), Positives = 182/325 (56%), Gaps = 25/325 (7%)
Query: 3 NAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPPL 62
NA+LR FLR++ ++ S N Y N P+WW+ +K YP W NI PP+
Sbjct: 116 NAVLRRFLRERDKLAASCKKNDVAKY-NLPLWWVAYLKNHYPK--HWHNIAAALQSHPPM 172
Query: 63 TLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAAQ 122
TLR+N+R SY + L G+ + A+ L + ++++P F G S+QD AQ
Sbjct: 173 TLRVNRRHGNAESYLEKLAVEGIAAKALDEYAVTLEEAVPVNRLPGFAEGLVSVQDFGAQ 232
Query: 123 LAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK- 181
AA LL+ + G +LDAC+APGGKT H+LE+AD ++ ++D + RL + +N+ RL +
Sbjct: 233 QAAYLLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQT 292
Query: 182 ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWL 241
A+ +D + +Y K FD ILAD+PCT SGV RRNPD+ WL
Sbjct: 293 ASAACADARDLAA----------------WYDGKPFDAILADVPCTASGVARRNPDVKWL 336
Query: 242 RRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLN 301
RR D K ++ +L+ LW+ LK GG++L TCS++ EE++ Q F H D+ +
Sbjct: 337 RRPTDALKTARQQEALLDALWQALKQGGRMLLATCSVFVEENDGQLQKFLNRHADAEPIE 396
Query: 302 SPGQLLPTVNKKQDYDGFFYSLFQK 326
S LLP NK Q DGF+Y+L QK
Sbjct: 397 SR-VLLP--NKHQ--DGFYYALIQK 416
>gi|145631966|ref|ZP_01787719.1| methionyl-tRNA formyltransferase [Haemophilus influenzae R3021]
gi|144982380|gb|EDJ89957.1| methionyl-tRNA formyltransferase [Haemophilus influenzae R3021]
Length = 450
Score = 229 bits (585), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 133/340 (39%), Positives = 199/340 (58%), Gaps = 35/340 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
++NA+LR FLR++ EI I + W +P W++N++K YPN W+ I++ ++
Sbjct: 132 LVNAVLRRFLREQDEILA-----IIDKNWQTLHPEWFVNKLKKAYPN---WREIIEANNQ 183
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLE-TTIIGPLAIKLHTPISISKIPKFFNGFCSIQ 117
KPP+ LR+N +K L +Y LL++ G+ T P A+ L PI++ K+P F G ++Q
Sbjct: 184 KPPMWLRVNSQKNALETYRTLLEEQGVSLKTSHHPNALCLDIPIAVQKLPHFEEGAVTVQ 243
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
D +AQ AA LL+ ++ ++LDAC+APGGKT H+LE+A +I++D RL + ENL+
Sbjct: 244 DLSAQWAAMLLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLE 303
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RLN +A ++ D SK + + +I K FDRIL D PC+ +GV+RR+P
Sbjct: 304 RLNQQAIVVCGDASKPD--EWLAEIGKSAVK---------FDRILLDAPCSATGVIRRHP 352
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR++ DI +L + KIL+ LW+ LKP G LL+ TCS+ EE+ EQ F H D
Sbjct: 353 DIKWLRKETDIAQLVELQKKILSALWEKLKPNGVLLYATCSVLPEENGEQIQAFLNAHAD 412
Query: 297 SIRLNSP---------GQLLPTVNKKQDYDGFFYSLFQKR 327
+ L P Q +P N DGF+Y+ KR
Sbjct: 413 AELLPLPFSDDKSAVGFQFIPQPNSG---DGFYYAKLLKR 449
>gi|240015126|ref|ZP_04722039.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae DGI18]
gi|268600059|ref|ZP_06134226.1| 16S RNA methyltransferase [Neisseria gonorrhoeae MS11]
gi|268584190|gb|EEZ48866.1| 16S RNA methyltransferase [Neisseria gonorrhoeae MS11]
Length = 419
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 125/325 (38%), Positives = 182/325 (56%), Gaps = 25/325 (7%)
Query: 3 NAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPPL 62
NA+LR FLR++ ++ S N Y N P+WW+ +K YP W NI PP+
Sbjct: 118 NAVLRRFLRERDKLAASCKKNDVAKY-NLPLWWVAYLKNHYPK--HWHNIAAALQSHPPM 174
Query: 63 TLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAAQ 122
TLR+N+R SY + L G+ + A+ L + ++++P F G S+QD AQ
Sbjct: 175 TLRVNRRHGNAESYLEKLAVEGIAAKALDEYAVTLEEAVPVNRLPGFAEGLVSVQDFGAQ 234
Query: 123 LAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK- 181
AA LL+ + G +LDAC+APGGKT H+LE+AD ++ ++D + RL + +N+ RL +
Sbjct: 235 QAAYLLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQT 294
Query: 182 ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWL 241
A+ +D + +Y K FD ILAD+PCT SGV RRNPD+ WL
Sbjct: 295 ASAACADARDLAA----------------WYDGKPFDAILADVPCTASGVARRNPDVKWL 338
Query: 242 RRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLN 301
RR D K ++ +L+ LW+ LK GG++L TCS++ EE++ Q F H D+ +
Sbjct: 339 RRPTDALKTARQQEALLDALWQALKQGGRMLLATCSVFVEENDGQLQKFLNRHADAEPIE 398
Query: 302 SPGQLLPTVNKKQDYDGFFYSLFQK 326
S LLP NK Q DGF+Y+L QK
Sbjct: 399 SR-VLLP--NKHQ--DGFYYALIQK 418
>gi|262273082|ref|ZP_06050899.1| ribosomal RNA small subunit methyltransferase B [Grimontia hollisae
CIP 101886]
gi|262222838|gb|EEY74146.1| ribosomal RNA small subunit methyltransferase B [Grimontia hollisae
CIP 101886]
Length = 426
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 118/334 (35%), Positives = 192/334 (57%), Gaps = 30/334 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR + R + E + + +P W + ++ YP QW+ +++ H+K
Sbjct: 113 LVNAVLRSYQRNQ-ETLDAASVAHDAGKYGHPGWLLTLLQQAYPT--QWEQVVEANHEKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTI--IGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T +Y LL ++G+ET++ A+KL TP ++ +P F G+ S+QD
Sbjct: 170 PMWLRVNRTHHTREAYKALLDQAGIETSVHPEAEDALKLATPCDVTALPGFSEGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
AAAQLA L ++G +LD C+APGGKTCH+LE ++++D + +RL + +N+KR
Sbjct: 230 AAAQLAVDYLKPQAGELILDCCAAPGGKTCHILEHEPSANVVAMDVDAARLTRVEDNVKR 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L LKA +I D + +++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 290 LKLKARVICGDARTPD----------------EWWQGEQFDRILLDAPCSATGVIRRHPD 333
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI +L +IL+ +W LK GG L++ TCS+ +E+ EQ F D+
Sbjct: 334 IKWLRRADDIDQLVSLQSEILDAMWAQLKSGGTLVYATCSVTPQENAEQVKAFLTRTPDA 393
Query: 298 I----RLNSPG-QLLPTVNKKQDYDGFFYSLFQK 326
+ PG Q+LP ++D DGF+Y++ +K
Sbjct: 394 VLETGTPTQPGRQILP---GQEDMDGFYYAVLKK 424
>gi|229846677|ref|ZP_04466785.1| sun protein [Haemophilus influenzae 7P49H1]
gi|229810770|gb|EEP46488.1| sun protein [Haemophilus influenzae 7P49H1]
Length = 451
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 132/340 (38%), Positives = 199/340 (58%), Gaps = 35/340 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
++NA+LR FLR++ EI I + W +P W++ ++K YPN W+ I++ ++
Sbjct: 132 LVNAVLRRFLREQDEILA-----IIDKNWQTLHPEWFVKKLKKAYPN---WREIIEANNQ 183
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLET-TIIGPLAIKLHTPISISKIPKFFNGFCSIQ 117
KPP+ LR+N +K L +Y LL++ G+ T P A+ L PI++ K+P F G ++Q
Sbjct: 184 KPPMWLRVNSQKNALETYRALLEEQGISAKTSHHPNALCLDIPIAVQKLPHFEEGAVTVQ 243
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
D +AQ AA LL+ ++ ++LDAC+APGGKT H+LE+A +I++D RL + ENL+
Sbjct: 244 DLSAQWAATLLEPKNEEWILDACAAPGGKTTHILELAPQSNVIALDVETHRLKRVEENLE 303
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RLN +A ++ D SK + + +I K FDRIL D PC+ +GV+RR+P
Sbjct: 304 RLNQQAIVVCGDASKPD--EWLAEIGKSAAK---------FDRILLDSPCSATGVIRRHP 352
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR++ DI +L + KIL+ LW+ LKP G LL+ TCS+ EE+ EQ F H D
Sbjct: 353 DIKWLRKETDIAQLVELQKKILSALWEKLKPNGVLLYATCSVLPEENCEQIQAFLNAHAD 412
Query: 297 SIRLNSP---------GQLLPTVNKKQDYDGFFYSLFQKR 327
+ L+ P Q +P N DGF+Y+ KR
Sbjct: 413 AELLSLPFSDDKSAVGFQFIPQPNSG---DGFYYAKLLKR 449
>gi|293398234|ref|ZP_06642439.1| ribosomal RNA small subunit methyltransferase B [Neisseria
gonorrhoeae F62]
gi|291611497|gb|EFF40567.1| ribosomal RNA small subunit methyltransferase B [Neisseria
gonorrhoeae F62]
Length = 419
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 125/325 (38%), Positives = 182/325 (56%), Gaps = 25/325 (7%)
Query: 3 NAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPPL 62
NA+LR FLR++ ++ S N Y N P+WW+ +K YP W NI PP+
Sbjct: 118 NAVLRRFLRERDKLAASCKKNDVAKY-NLPLWWVAYLKNHYPK--HWHNIAAALQSHPPM 174
Query: 63 TLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAAQ 122
TLR+N+R SY + L G+ + A+ L + ++++P F G S+QD AQ
Sbjct: 175 TLRVNRRHGNAESYLEKLVAEGIAAKALDEYAVTLEEAVPVNRLPGFAEGLVSVQDFGAQ 234
Query: 123 LAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK- 181
AA LL+ + G +LDAC+APGGKT H+LE+AD ++ ++D + RL + +N+ RL +
Sbjct: 235 QAAYLLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQT 294
Query: 182 ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWL 241
A+ +D + +Y K FD ILAD+PCT SGV RRNPD+ WL
Sbjct: 295 ASAACADARDLAA----------------WYDGKPFDAILADVPCTASGVARRNPDVKWL 338
Query: 242 RRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLN 301
RR D K ++ +L+ LW+ LK GG++L TCS++ EE++ Q F H D+ +
Sbjct: 339 RRPTDALKTARRQEALLDALWQALKQGGRMLLATCSVFVEENDGQLQKFLNRHADAEPIE 398
Query: 302 SPGQLLPTVNKKQDYDGFFYSLFQK 326
S LLP NK Q DGF+Y+L QK
Sbjct: 399 SR-VLLP--NKHQ--DGFYYALIQK 418
>gi|68249187|ref|YP_248299.1| SUN protein [Haemophilus influenzae 86-028NP]
gi|68057386|gb|AAX87639.1| SUN protein [Haemophilus influenzae 86-028NP]
Length = 450
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 133/340 (39%), Positives = 198/340 (58%), Gaps = 35/340 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
++NA+LR FLR++ EI I + W +P W++N++K YPN W+ I++ ++
Sbjct: 132 LVNAVLRRFLREQDEILA-----IIDKNWQTLHPEWFVNKLKKAYPN---WREIIEANNQ 183
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLET-TIIGPLAIKLHTPISISKIPKFFNGFCSIQ 117
KPP+ LR+N +K L +Y LL++ G+ T P A+ L PI++ K+P F G ++Q
Sbjct: 184 KPPMWLRVNSQKNALETYRTLLEEQGISAKTSHHPNALCLDIPIAVQKLPHFEEGAVTVQ 243
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
D +AQ AA LL+ ++ ++LDAC+APGGKT H+LE+A +I++D RL + ENL
Sbjct: 244 DLSAQWAAMLLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLA 303
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RLN +A ++ D SK + + +I K FDRIL D PC+ +GV+RR+P
Sbjct: 304 RLNQQAIVVCGDASKPD--EWLAEIGKSAVK---------FDRILLDAPCSATGVIRRHP 352
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR++ DI +L + KIL+ LW+ LKP G LL+ TCS+ EE+ EQ F H D
Sbjct: 353 DIKWLRKETDIAQLVELQKKILSALWEKLKPNGVLLYATCSVLPEENCEQIQAFLNAHAD 412
Query: 297 SIRLNSPG---------QLLPTVNKKQDYDGFFYSLFQKR 327
+ L P Q +P N DGF+Y+ KR
Sbjct: 413 AELLPLPVSDDKSAVGFQFIPQPNSG---DGFYYAKLLKR 449
>gi|145639370|ref|ZP_01794975.1| methionyl-tRNA formyltransferase [Haemophilus influenzae PittII]
gi|145271417|gb|EDK11329.1| methionyl-tRNA formyltransferase [Haemophilus influenzae PittII]
Length = 451
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 132/340 (38%), Positives = 199/340 (58%), Gaps = 35/340 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
++NA+LR FLR++ EI I + W +P W++ ++K YPN W+ I++ ++
Sbjct: 132 LVNAVLRRFLREQDEILA-----IIDKNWQTLHPEWFVKKLKKAYPN---WREIIEANNQ 183
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLET-TIIGPLAIKLHTPISISKIPKFFNGFCSIQ 117
KPP+ LR+N +K L +Y LL++ G+ T P A+ L PI++ K+P F G ++Q
Sbjct: 184 KPPMWLRVNSQKNALETYRALLEEQGISAKTSHHPNALCLDIPIAVQKLPHFEEGAVTVQ 243
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
D +AQ AA LL+ ++ ++LDAC+APGGKT H+LE+A +I++D RL + ENL+
Sbjct: 244 DLSAQWAATLLEPKNEEWILDACAAPGGKTTHILELAPQSNVIALDVETHRLKRVEENLE 303
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RLN +A ++ D SK + + +I K FDRIL D PC+ +GV+RR+P
Sbjct: 304 RLNQQAIVVCGDASKPD--EWLAEIGKSAAK---------FDRILLDSPCSATGVIRRHP 352
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR++ DI +L + KIL+ LW+ LKP G LL+ TCS+ EE+ EQ F H D
Sbjct: 353 DIKWLRKETDIAQLVELQKKILSALWEKLKPNGVLLYATCSVLPEENCEQIQAFLNAHAD 412
Query: 297 SIRLNSP---------GQLLPTVNKKQDYDGFFYSLFQKR 327
+ L+ P Q +P N DGF+Y+ KR
Sbjct: 413 AELLSLPFIDDKSAVGFQFIPQPNSG---DGFYYAKLLKR 449
>gi|319897839|ref|YP_004136036.1| 16S rRNA m5c967 methyltransferase,
s-adenosyl-l-methionine-dependent [Haemophilus
influenzae F3031]
gi|317433345|emb|CBY81723.1| 16S rRNA m5C967 methyltransferase,S-adenosyl-L-methionine-dependent
[Haemophilus influenzae F3031]
Length = 451
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 132/340 (38%), Positives = 199/340 (58%), Gaps = 35/340 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
++NA+LR FLR++ EI I + W +P W++N++K YPN W I++ ++
Sbjct: 132 LVNAVLRRFLREQDEILA-----IIDKNWQTLHPEWFVNKLKKAYPN---WSEIIEANNQ 183
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLET-TIIGPLAIKLHTPISISKIPKFFNGFCSIQ 117
KPP+ LR+N +K L +Y LL++ G+ + T P A+ L PI++ K+P F G ++Q
Sbjct: 184 KPPMWLRVNSQKNALETYRTLLEEQGVSSKTSHHPNALCLDIPIAVQKLPYFEEGAVTVQ 243
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
D +AQ A LL+ ++ ++LDAC+APGGKT H+LE+A +I++D RL + ENL+
Sbjct: 244 DLSAQWATTLLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVETHRLKRVEENLE 303
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RLN +A ++ D SK + + +I K FDRIL D PC+ +GV+RR+P
Sbjct: 304 RLNQQAIVVCGDASKPD--EWLAEIGKSAAK---------FDRILLDAPCSATGVIRRHP 352
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR++ DI +L + KIL+ LW+ LKP G LL+ TCS+ EE+ EQ F H D
Sbjct: 353 DIKWLRKETDIAQLVELQKKILSALWEKLKPNGVLLYATCSVLPEENYEQIQEFLNAHAD 412
Query: 297 SIRLNSP---------GQLLPTVNKKQDYDGFFYSLFQKR 327
+ L+ P Q +P N DGF+Y+ KR
Sbjct: 413 AELLSLPFSDDTSAVGFQFIPQPNSG---DGFYYAKLLKR 449
>gi|312882737|ref|ZP_07742472.1| ribosomal RNA small subunit methyltransferase B [Vibrio
caribbenthicus ATCC BAA-2122]
gi|309369595|gb|EFP97112.1| ribosomal RNA small subunit methyltransferase B [Vibrio
caribbenthicus ATCC BAA-2122]
Length = 426
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 123/336 (36%), Positives = 203/336 (60%), Gaps = 30/336 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R + E ++ + + +P W + ++ +YP W+ I+ + K
Sbjct: 113 LINAVLRNYQRNQ-EQLDAQAVSHDAGKYGHPSWLLKLLQASYPT--DWQQIVAANNTKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+NQ Y +LLK+SG+E I AIKL +P ++++P F G+ S+QD
Sbjct: 170 PMWLRVNQHHHQRQDYLELLKESGIECEIHEEAQDAIKLLSPCDVTQLPGFDKGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
AAAQL++ L+ + G +LD C+APGGKT H+LE A + K++++D + +RL + +NL+R
Sbjct: 230 AAAQLSSDFLNAQDGELILDCCAAPGGKTAHILERAPNCKVVAIDCDDTRLQRVHDNLQR 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L AT+I D N +++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 290 LQLNATVICGD----------------ARNPEEWWQGEKFDRILLDAPCSATGVIRRHPD 333
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIF-SKNHKD 296
I WLRR DI L++ +IL+ +W+ LKPGG L++ TCS+ +E+++Q F ++ +
Sbjct: 334 IKWLRRAEDIHALAQLQSEILDAMWQQLKPGGTLVYATCSITPQENKDQVKAFLTRTCEA 393
Query: 297 SI---RLNSPG-QLLPTVNKKQDYDGFFYSLFQKRK 328
S+ +L +PG Q+LP ++D DGF+Y++ +K K
Sbjct: 394 SLIGSKLENPGRQILPG---ERDMDGFYYAVIKKAK 426
>gi|303256329|ref|ZP_07342345.1| ribosomal RNA small subunit methyltransferase B [Burkholderiales
bacterium 1_1_47]
gi|330999024|ref|ZP_08322749.1| ribosomal RNA small subunit methyltransferase B [Parasutterella
excrementihominis YIT 11859]
gi|302861058|gb|EFL84133.1| ribosomal RNA small subunit methyltransferase B [Burkholderiales
bacterium 1_1_47]
gi|329575766|gb|EGG57292.1| ribosomal RNA small subunit methyltransferase B [Parasutterella
excrementihominis YIT 11859]
Length = 434
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 121/338 (35%), Positives = 186/338 (55%), Gaps = 32/338 (9%)
Query: 2 INAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
+NAILR F R+K E+ K +N P WWI + + + Q I + K PP
Sbjct: 115 VNAILRRFGREKTELL-VKAEKQPTVRFNAPDWWIRRYEAVFGE--QTPEIFALQQKHPP 171
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+TLR+N KT++ L+K+G+ +G + L +P + +P F G S+QDA +
Sbjct: 172 MTLRVNTGKTSVEEAQAKLEKAGIPAERVGKFGLILLSPRPVKDVPGFLEGEVSVQDAGS 231
Query: 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181
QLAA LLD + GM VLDAC+APGGKT H LE+AD+ + +++ + R + I+ENL RL LK
Sbjct: 232 QLAAELLDAKEGMRVLDACAAPGGKTAHSLELADVDMTALEIDPKRASRITENLDRLGLK 291
Query: 182 ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWL 241
A + ++D + +++ + F+RIL D PCT SG+VRR+PDIPW
Sbjct: 292 AKVTVAD----------------AGDPKKWWDGRPFERILLDAPCTASGIVRRHPDIPWS 335
Query: 242 RRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS--IR 299
R+ DI KL++ K+L +W +L G++L+ CS++ EE F H D+ I
Sbjct: 336 RKPEDIAKLARTQGKLLETMWPLLANNGRILYAVCSVFPEEGPRGIEAFCARHPDAKLIP 395
Query: 300 LNSPGQLLPTVNKKQD-----------YDGFFYSLFQK 326
+ G+ L +++ + +DGFFY+L +K
Sbjct: 396 IGPEGENLLSLSPAEGPETPGSVWPATHDGFFYALLEK 433
>gi|145637960|ref|ZP_01793600.1| potassium transporter peripheral membrane component [Haemophilus
influenzae PittHH]
gi|145268851|gb|EDK08814.1| potassium transporter peripheral membrane component [Haemophilus
influenzae PittHH]
Length = 450
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 132/340 (38%), Positives = 198/340 (58%), Gaps = 35/340 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
++NA+LR FLR++ EI I + W +P W++ ++K YPN W+ I++ ++
Sbjct: 132 LVNAVLRRFLREQDEILA-----IIDKNWQTLHPEWFVKKLKKAYPN---WREIIEANNQ 183
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLET-TIIGPLAIKLHTPISISKIPKFFNGFCSIQ 117
KPP+ LR+N +K L +Y LL++ G+ T P A+ L PI++ K+P F G ++Q
Sbjct: 184 KPPMWLRVNSQKNALETYRALLEEQGISAKTSHHPNALCLDIPIAVQKLPHFEEGAVTVQ 243
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
D +AQ AA LL+ ++ ++LDAC+APGGKT H+LE+A +I++D RL + ENL+
Sbjct: 244 DLSAQWAATLLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLE 303
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RLN +A ++ D SK + + +I K FDRIL D PC+ +GV+RR+P
Sbjct: 304 RLNQQAIVVCGDASKPD--EWLAEIGKSAVK---------FDRILLDAPCSATGVIRRHP 352
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR++ DI +L + KIL+ LW+ LKP G LL+ TCS+ EE+ EQ F H D
Sbjct: 353 DIKWLRKETDIAQLVELQKKILSALWEKLKPNGVLLYATCSVLPEENGEQIQAFLNAHAD 412
Query: 297 SIRLNSPG---------QLLPTVNKKQDYDGFFYSLFQKR 327
+ L P Q +P N DGF+Y+ KR
Sbjct: 413 AELLPLPVSDDKSAVGFQFIPQPNSG---DGFYYAKLLKR 449
>gi|254494751|ref|ZP_05107922.1| 16S RNA methyltransferase [Neisseria gonorrhoeae 1291]
gi|226513791|gb|EEH63136.1| 16S RNA methyltransferase [Neisseria gonorrhoeae 1291]
Length = 419
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 124/325 (38%), Positives = 183/325 (56%), Gaps = 25/325 (7%)
Query: 3 NAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPPL 62
NA+LR FLR++ ++ S + Y N P+WW+ +K YP W NI PP+
Sbjct: 118 NAVLRRFLREREKLAASCKKDDVAKY-NLPLWWVAYLKNHYPK--HWHNIAAALQSHPPM 174
Query: 63 TLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAAQ 122
TLR+N+R SY + L G+ + A+ L + ++++P F G S+QD AQ
Sbjct: 175 TLRVNRRHGNAESYLEKLAVEGIAAKALDEYAVTLEEAVPVNRLPGFAEGLVSVQDFGAQ 234
Query: 123 LAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK- 181
AA LL+ + G +LDAC+APGGKT H+LE+AD ++ ++D + RL + +N+ RL +
Sbjct: 235 QAAYLLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQT 294
Query: 182 ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWL 241
A+ +D + +Y K FD ILAD+PCT SGV RRNPD+ WL
Sbjct: 295 ASAACADARDLAA----------------WYDGKPFDAILADVPCTASGVARRNPDVKWL 338
Query: 242 RRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLN 301
RR D K ++ +L+ LW++LK GG++L TCS++ EE++ Q F H D+ +
Sbjct: 339 RRPTDAAKTARRQEALLDALWQVLKQGGRMLLATCSVFVEENDGQLQKFLNRHADAEPIE 398
Query: 302 SPGQLLPTVNKKQDYDGFFYSLFQK 326
S LLP NK Q DGF+Y+L QK
Sbjct: 399 SR-VLLP--NKHQ--DGFYYALIQK 418
>gi|417842407|ref|ZP_12488493.1| Ribosomal RNA small subunit methyltransferase B [Haemophilus
haemolyticus M21127]
gi|341951698|gb|EGT78256.1| Ribosomal RNA small subunit methyltransferase B [Haemophilus
haemolyticus M21127]
Length = 450
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 132/339 (38%), Positives = 200/339 (58%), Gaps = 35/339 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
++NA+LR FLR++ EI I + W +P W++N++K YPN W+ I++ ++
Sbjct: 132 LVNAVLRRFLREQDEILA-----IIDKNWQTLHPEWFVNKLKKAYPN---WREIIEANNQ 183
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLET-TIIGPLAIKLHTPISISKIPKFFNGFCSIQ 117
KPP+ LR+N +K L +Y LL++ G+ + T P A+ L PI++ K+P F G ++Q
Sbjct: 184 KPPMWLRVNSQKNALETYRTLLEEQGVSSKTSHHPNALCLDIPIAVQKLPHFEEGAVTVQ 243
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
D +AQ AA LL+ ++ ++LDAC+APGGKT H+LE A +I++D RL + ENL+
Sbjct: 244 DLSAQWAATLLEPKNEEWILDACAAPGGKTTHILEFAPQANVIALDVEPHRLKRVEENLE 303
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RLN +A ++ D S+ + + +I K FDRIL D PC+ +GV+RR+P
Sbjct: 304 RLNQQAMVVCGDASQPD--EWLAEIGKSAVK---------FDRILLDAPCSATGVIRRHP 352
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR++ DI +L + KIL+ LW+ LKP G LL+VTCS+ EE+ EQ F H D
Sbjct: 353 DIKWLRKETDIAQLVELQKKILSALWEKLKPNGVLLYVTCSVLPEENCEQIQAFLNAHSD 412
Query: 297 SIRLNSP---------GQLLPTVNKKQDYDGFFYSLFQK 326
+ L P Q +P N DGF+Y+ +K
Sbjct: 413 AELLPLPFSDDNSAVGFQFIPQPNSG---DGFYYAKLRK 448
>gi|239813610|ref|YP_002942520.1| sun protein [Variovorax paradoxus S110]
gi|239800187|gb|ACS17254.1| sun protein [Variovorax paradoxus S110]
Length = 442
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 131/354 (37%), Positives = 194/354 (54%), Gaps = 56/354 (15%)
Query: 2 INAILREFLRKKGEIFKSKMYNIHE--SYWNYPIWWINQVKITYPNFFQWKNILDVGHKK 59
INA LR FLR++ E+ + HE + WN+P WWI ++K +P W+ +L + +
Sbjct: 115 INACLRRFLRERDELVAA---TDHEPVAQWNHPRWWIERLKRDHPR--DWQRVLAADNAQ 169
Query: 60 PPLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDA 119
PP+TLR+N RKTT+ SY L+ GL +G ++L + ++P F +G CS+QDA
Sbjct: 170 PPMTLRVNLRKTTVASYQLALQAVGLTAVRVGEAGLQLARARPVQQLPGFADGECSVQDA 229
Query: 120 A--------------AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD---IKLISVD 162
A A AAPL VLDAC+APGGKT HLLE A I++ +++
Sbjct: 230 AAQLAAPLLLEGLLPAAGAAPL-------RVLDACAAPGGKTAHLLEFAGPAAIEVTALE 282
Query: 163 NNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILA 222
+ +R I E L RL L A ++++D ++ ++ FD IL
Sbjct: 283 VDAARSRRIDETLGRLGLSARVVVADAARPAA----------------WWDGTPFDAILL 326
Query: 223 DLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEE 282
D PCT SG+VRR+PD+ WLRR++D +L+ +L LW +++PGG+LL+ TCS++ EE
Sbjct: 327 DAPCTASGIVRRHPDVRWLRRESDTAQLAVQQAALLAALWPLVRPGGRLLYCTCSVFREE 386
Query: 283 SEEQAIIFSKNHKDSIRLNSPGQLLPTV---------NKKQDYDGFFYSLFQKR 327
+Q F ++ D+ SPG LLP N D+DGFFY+L +KR
Sbjct: 387 GSQQIDAFLAHNTDARLGASPGHLLPQSGANARAVPDNPSGDHDGFFYALLEKR 440
>gi|296315160|ref|ZP_06865101.1| ribosomal RNA small subunit methyltransferase B [Neisseria
polysaccharea ATCC 43768]
gi|296837969|gb|EFH21907.1| ribosomal RNA small subunit methyltransferase B [Neisseria
polysaccharea ATCC 43768]
Length = 419
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 124/326 (38%), Positives = 186/326 (57%), Gaps = 27/326 (8%)
Query: 3 NAILREFLRKKGEIFKS-KMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
NA+LR FLR++ ++ S K ++ + N P+WW+ +K YP W NI PP
Sbjct: 118 NAVLRRFLRERDKLAASCKKDDV--AKHNLPLWWVAYLKNHYPK--HWHNITAALQSHPP 173
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+TLR+N+R SY + L G+ + A+ L + ++++P F +G S+QD A
Sbjct: 174 MTLRVNRRHGNAESYLEKLAAEGIAAKALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGA 233
Query: 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181
Q AA LL+ + G +LDAC+APGGKT H+LE+AD ++ ++D + RL + +N+ RL +
Sbjct: 234 QQAAYLLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQ 293
Query: 182 -ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A+ +D + +Y K FD ILAD+PCT SGV RRNPD+ W
Sbjct: 294 TASAACADARDLAA----------------WYDGKPFDAILADVPCTASGVARRNPDVKW 337
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR D K ++ +L+ LW++LK GG++L TCS++ EE++ Q F H D+ +
Sbjct: 338 LRRPTDAAKTARQQEALLDALWQVLKSGGRMLIATCSVFVEENDGQLQKFLSRHNDAEPI 397
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQK 326
S LLP NK Q DGF+Y+L QK
Sbjct: 398 ESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|442771599|gb|AGC72281.1| ribosomal RNA small subunit methyltransferase B [uncultured
bacterium A1Q1_fos_1266]
Length = 447
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 137/339 (40%), Positives = 209/339 (61%), Gaps = 33/339 (9%)
Query: 2 INAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
INA LR +LR+K + + ++ WN+P+WWI +++ YP+ W+ IL G+ + P
Sbjct: 129 INACLRRYLREKDALNQQASKSL-VGRWNHPLWWIRRLQTDYPD--SWQLILQAGNGRAP 185
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+TLR+N RK+++ Y S T +G + L P+ +++IP F G S+QDAAA
Sbjct: 186 MTLRVNIRKSSVADY-----LSHFAATSVGEFGLTLTKPMPVTQIPGFVEGVVSVQDAAA 240
Query: 122 QLAAPLL--DI-RSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRL 178
QLAAPLL D+ RSG+ +LDAC+APGGKT HLLEI+D + ++D + R + I+E LKRL
Sbjct: 241 QLAAPLLLNDLPRSGLQILDACAAPGGKTAHLLEISDSDVTAMDVDPVRCDRINETLKRL 300
Query: 179 NLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDI 238
LKA ++++D + L + + + +K+ F+ IL D PC+ SG+VRR+PD
Sbjct: 301 GLKANVLVADAA---LPETWPEDLRKSR----------FNAILLDAPCSASGIVRRHPDS 347
Query: 239 PWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSI 298
WLRR+ DI +L+ K+LN LW+ L+PGG+LL+ TCS++ E E+Q F ++K +
Sbjct: 348 RWLRRETDIAQLASIQWKLLNTLWQYLQPGGRLLYCTCSVFKAEGEDQINKFLDSNKYAT 407
Query: 299 RLNSPGQLL---------PTVNKKQDYDGFFYSLFQKRK 328
L S G L+ NK +++DGFFY+L +K K
Sbjct: 408 LLPSHGHLISIRDAISGTSEDNKLKNHDGFFYALLEKAK 446
>gi|417839633|ref|ZP_12485806.1| Ribosomal RNA small subunit methyltransferase B [Haemophilus
haemolyticus M19107]
gi|341951999|gb|EGT78542.1| Ribosomal RNA small subunit methyltransferase B [Haemophilus
haemolyticus M19107]
Length = 450
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 131/340 (38%), Positives = 200/340 (58%), Gaps = 35/340 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
++NA+LR FLR++ EI I + W +P W++N++K YPN W+ I++ ++
Sbjct: 132 LVNAVLRRFLREQDEILA-----IIDKNWQTFHPEWFVNKLKKAYPN---WREIIEANNQ 183
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLET-TIIGPLAIKLHTPISISKIPKFFNGFCSIQ 117
KPP+ LR+N +K L +Y LL++ G+ T A+ L PI++ K+P F G ++Q
Sbjct: 184 KPPMWLRVNSQKNALETYRTLLEEQGISAKTSHHSNALCLDIPIAVQKLPHFEEGAVTVQ 243
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
D +AQ AA LL+ ++ ++LDAC+APGGKT H+LE+A +I++D RL + ENL+
Sbjct: 244 DLSAQWAATLLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLE 303
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RLN +A ++ D S+ + + +I K FDRIL D PC+ +GV+RR+P
Sbjct: 304 RLNQQAIVVCGDASQPD--ECLAEIGKSAVK---------FDRILLDAPCSATGVIRRHP 352
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR+++DI +L + KIL+ LW+ LKP G LL+ TCS+ EE+ EQ F H D
Sbjct: 353 DIKWLRKESDIAQLVELQKKILSALWEKLKPSGVLLYATCSVLPEENCEQIQAFLNAHAD 412
Query: 297 SIRLNSP---------GQLLPTVNKKQDYDGFFYSLFQKR 327
+ L+ P Q +P N DGF+Y+ KR
Sbjct: 413 AELLSLPFGDDKSAVGFQFIPQPNSG---DGFYYAKLCKR 449
>gi|15676040|ref|NP_273170.1| 16S RNA methyltransferase [Neisseria meningitidis MC58]
gi|385852322|ref|YP_005898836.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis H44/76]
gi|416194642|ref|ZP_11617412.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis CU385]
gi|427826212|ref|ZP_18993271.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis H44/76]
gi|433464106|ref|ZP_20421600.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM422]
gi|433487310|ref|ZP_20444489.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis M13255]
gi|433489484|ref|ZP_20446623.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM418]
gi|433504087|ref|ZP_20461032.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 9506]
gi|433506164|ref|ZP_20463083.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 9757]
gi|433508428|ref|ZP_20465314.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 12888]
gi|433510380|ref|ZP_20467224.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 4119]
gi|7225328|gb|AAF40571.1| 16S RNA methyltransferase [Neisseria meningitidis MC58]
gi|316985958|gb|EFV64897.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis H44/76]
gi|325141257|gb|EGC63756.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis CU385]
gi|325199326|gb|ADY94781.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis H44/76]
gi|432205916|gb|ELK61931.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM422]
gi|432226075|gb|ELK81808.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis M13255]
gi|432230480|gb|ELK86155.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM418]
gi|432243470|gb|ELK98981.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 9506]
gi|432244180|gb|ELK99675.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 9757]
gi|432250079|gb|ELL05477.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 12888]
gi|432250658|gb|ELL06048.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 4119]
Length = 419
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 123/327 (37%), Positives = 188/327 (57%), Gaps = 27/327 (8%)
Query: 3 NAILREFLRKKGEIFKS-KMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
NA+LR FLR++ ++ S K ++ + N P+WW+ +K YP W NI PP
Sbjct: 118 NAVLRRFLRERDKLVASCKKDDVAKH--NLPLWWVAYLKNHYPK--HWHNIAAALQSHPP 173
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+TLR+N+R SY + L G+ + A+ L + ++++P F +G S+QD A
Sbjct: 174 MTLRVNRRHGNAESYLEKLVAEGIAAKALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGA 233
Query: 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181
Q AA LL+ + G +LDAC+APGGKT H+LE+AD ++ ++D + RL + +N+ RL +
Sbjct: 234 QQAAYLLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQ 293
Query: 182 -ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A+ +D ++ +Y K FD +LAD+PCT SGV RRNPD+ W
Sbjct: 294 TASTACADAQDLSA----------------WYDGKPFDAVLADVPCTASGVARRNPDVKW 337
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR D K ++ +L+ LW++LK GG++L TCS++ EE++ Q F H D+ +
Sbjct: 338 LRRPTDALKTARQQEALLDALWQVLKSGGRMLIATCSVFVEENDGQLQKFLNRHADAELI 397
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQKR 327
S LLP NK Q DGF+Y+L QK+
Sbjct: 398 ESR-VLLP--NKHQ--DGFYYALIQKQ 419
>gi|416181156|ref|ZP_11611511.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis M13399]
gi|325135221|gb|EGC57846.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis M13399]
Length = 419
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 123/327 (37%), Positives = 187/327 (57%), Gaps = 27/327 (8%)
Query: 3 NAILREFLRKKGEIFKS-KMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
NA+LR FLR++ ++ S K ++ + N P+WW+ +K YP W NI PP
Sbjct: 118 NAVLRRFLRERDKLVASCKKDDV--AKHNLPLWWVAYLKNHYPK--HWHNITAALQSHPP 173
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+TLR+N+R SY + L G+ + A+ L + ++++P F +G S+QD A
Sbjct: 174 MTLRVNRRHGNAESYLEKLVAEGIAAKALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGA 233
Query: 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181
Q AA LL+ + G +LDAC+APGGKT H+LE+AD ++ ++D + RL + +N+ RL +
Sbjct: 234 QQAAYLLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQ 293
Query: 182 -ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A+ +D + +Y K FD +LAD+PCT SGV RRNPD+ W
Sbjct: 294 TASTACADAQDLPA----------------WYDGKPFDAVLADVPCTASGVARRNPDVKW 337
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR D K ++ +L+ LW++LK GG++L TCS++ EE++ Q F H D+ +
Sbjct: 338 LRRPTDAAKTARQQEALLDALWQVLKSGGRMLIATCSVFVEENDGQLQKFLNRHADAELI 397
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQKR 327
S LLP NK Q DGF+Y+L QK+
Sbjct: 398 ESR-VLLP--NKHQ--DGFYYALIQKQ 419
>gi|385342847|ref|YP_005896718.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis M01-240149]
gi|385856260|ref|YP_005902772.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NZ-05/33]
gi|416167585|ref|ZP_11607683.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis OX99.30304]
gi|416186059|ref|ZP_11613508.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis M0579]
gi|325131147|gb|EGC53868.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis OX99.30304]
gi|325137171|gb|EGC59766.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis M0579]
gi|325203053|gb|ADY98507.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis M01-240149]
gi|325207149|gb|ADZ02601.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NZ-05/33]
Length = 419
Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 123/326 (37%), Positives = 187/326 (57%), Gaps = 27/326 (8%)
Query: 3 NAILREFLRKKGEIFKS-KMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
NA+LR FLR++ ++ S K ++ + N P+WW+ +K YP W NI PP
Sbjct: 118 NAVLRRFLRERDKLVASCKKDDV--AKHNLPLWWVAYLKNHYPK--HWHNIAAALQSHPP 173
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+TLR+N+R SY + L G+ + A+ L + ++++P F +G S+QD A
Sbjct: 174 MTLRVNRRHGNAESYLEKLVAEGIAAKALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGA 233
Query: 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181
Q AA LL+ + G +LDAC+APGGKT H+LE+AD ++ ++D + RL + +N+ RL +
Sbjct: 234 QQAAYLLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQ 293
Query: 182 -ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A+ +D ++ +Y K FD +LAD+PCT SGV RRNPD+ W
Sbjct: 294 TASTACADAQDLSA----------------WYDGKPFDAVLADVPCTASGVARRNPDVKW 337
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR D K ++ +L+ LW++LK GG++L TCS++ EE++ Q F H D+ +
Sbjct: 338 LRRPTDALKTARQQEALLDALWQVLKSGGRMLIATCSVFVEENDGQLQKFLNRHADAELI 397
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQK 326
S LLP NK Q DGF+Y+L QK
Sbjct: 398 ESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|418287313|ref|ZP_12899926.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM233]
gi|372203884|gb|EHP17481.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM233]
Length = 419
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 125/326 (38%), Positives = 185/326 (56%), Gaps = 27/326 (8%)
Query: 3 NAILREFLRKKGEIFKS-KMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
NAILR FLR++ ++ S K ++ + N P+WW+ +K YP W NI PP
Sbjct: 118 NAILRRFLRERDKLAASCKKDDV--AKHNLPLWWVAYLKNHYPK--HWHNIAAALQSHPP 173
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+TLR+N+R SY + L G+ + A+ L + ++++P F +G S+QD A
Sbjct: 174 MTLRVNRRHGNAESYLEKLAAEGIAAKALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGA 233
Query: 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181
Q AA LL+ + G +LDAC+APGGKT H+LE+AD ++ ++D + RL + +N+ RL +
Sbjct: 234 QQAAYLLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQ 293
Query: 182 -ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A+ +D + +Y K FD ILAD+PCT SGV RRNPD+ W
Sbjct: 294 TASAACADARDLAA----------------WYDGKPFDTILADVPCTASGVARRNPDVKW 337
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR D K ++ +L+ LW+ LK GG++L TCS++ EE++ Q F H D+ +
Sbjct: 338 LRRPTDALKTARQQEALLDALWQTLKQGGRMLLATCSVFVEENDGQLQKFLNRHADAEPI 397
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQK 326
S LLP NK Q DGF+Y+L QK
Sbjct: 398 ESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|433472493|ref|ZP_20429863.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 97021]
gi|433480917|ref|ZP_20438189.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 2006087]
gi|433483041|ref|ZP_20440281.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 2002038]
gi|433485139|ref|ZP_20442346.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 97014]
gi|432212377|gb|ELK68315.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 97021]
gi|432219270|gb|ELK75117.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 2006087]
gi|432223871|gb|ELK79646.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 2002038]
gi|432224982|gb|ELK80742.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 97014]
Length = 419
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 124/325 (38%), Positives = 181/325 (55%), Gaps = 25/325 (7%)
Query: 3 NAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPPL 62
NA+LR FLR++ E S + N P+WW+ +K YP W NI PP+
Sbjct: 118 NAVLRRFLRER-EKLASSCKKDDVAKHNLPLWWVAYLKNHYPK--HWHNITAALQSHPPM 174
Query: 63 TLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAAQ 122
TLR+N+R SY + L G+ + A+ L + ++++P F +G S+QD AQ
Sbjct: 175 TLRVNRRHGNAESYLEKLAAEGIAAKALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGAQ 234
Query: 123 LAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK- 181
AA LL+ + G +LDAC+APGGKT H+LE+AD ++ ++D + RL + +N+ RL +
Sbjct: 235 QAAYLLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQT 294
Query: 182 ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWL 241
A+ +D + +Y K FD ILAD+PCT SGV RRNPD+ WL
Sbjct: 295 ASAACADARDLAA----------------WYDGKPFDAILADVPCTASGVARRNPDVKWL 338
Query: 242 RRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLN 301
RR D K ++ +L+ LW+ LK GG++L TCS++ EE++ Q F H D+ +
Sbjct: 339 RRPTDALKTARQQEALLDALWQTLKQGGRMLLATCSVFVEENDGQLQKFLNRHADAEPIE 398
Query: 302 SPGQLLPTVNKKQDYDGFFYSLFQK 326
S LLP NK Q DGF+Y+L QK
Sbjct: 399 SR-VLLP--NKHQ--DGFYYALIQK 418
>gi|218767200|ref|YP_002341712.1| SUN-like protein [Neisseria meningitidis Z2491]
gi|385338991|ref|YP_005892864.1| ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase; 16S rRNA m5C967
methyltransferase) [Neisseria meningitidis WUE 2594]
gi|433474586|ref|ZP_20431934.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 88050]
gi|433478816|ref|ZP_20436115.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 63041]
gi|433512470|ref|ZP_20469272.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 63049]
gi|433514651|ref|ZP_20471427.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 2004090]
gi|433516697|ref|ZP_20473451.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 96023]
gi|433518890|ref|ZP_20475617.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 65014]
gi|433523067|ref|ZP_20479740.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 97020]
gi|433527274|ref|ZP_20483887.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM3652]
gi|433529365|ref|ZP_20485965.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM3642]
gi|433531487|ref|ZP_20488056.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 2007056]
gi|433533619|ref|ZP_20490168.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 2001212]
gi|433540045|ref|ZP_20496502.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 63006]
gi|121051208|emb|CAM07479.1| SUN homolog [Neisseria meningitidis Z2491]
gi|319411405|emb|CBY91816.1| ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase; 16S rRNA m5C967
methyltransferase) [Neisseria meningitidis WUE 2594]
gi|432212646|gb|ELK68581.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 88050]
gi|432218790|gb|ELK74642.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 63041]
gi|432250225|gb|ELL05620.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 63049]
gi|432256315|gb|ELL11638.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 2004090]
gi|432256489|gb|ELL11811.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 96023]
gi|432256855|gb|ELL12166.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 65014]
gi|432262940|gb|ELL18171.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 97020]
gi|432267343|gb|ELL22521.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM3652]
gi|432269507|gb|ELL24664.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 2007056]
gi|432270016|gb|ELL25163.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM3642]
gi|432274172|gb|ELL29265.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 2001212]
gi|432278026|gb|ELL33070.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 63006]
Length = 419
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 125/326 (38%), Positives = 185/326 (56%), Gaps = 27/326 (8%)
Query: 3 NAILREFLRKKGEIFKS-KMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
NAILR FLR++ ++ S K ++ + N P+WW+ +K YP W NI PP
Sbjct: 118 NAILRRFLRERDKLAASCKKDDV--AKHNLPLWWVAYLKNHYPK--HWHNIAAALQSHPP 173
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+TLR+N+R SY + L G+ + A+ L + ++++P F +G S+QD A
Sbjct: 174 MTLRVNRRHGNAESYLEKLAAEGIAAKALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGA 233
Query: 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181
Q AA LL+ + G +LDAC+APGGKT H+LE+AD ++ ++D + RL + +N+ RL +
Sbjct: 234 QQAAYLLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQ 293
Query: 182 -ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A+ +D + +Y K FD ILAD+PCT SGV RRNPD+ W
Sbjct: 294 TASAACADARDLAA----------------WYDGKPFDTILADVPCTASGVARRNPDVKW 337
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR D K ++ +L+ LW+ LK GG++L TCS++ EE++ Q F H D+ +
Sbjct: 338 LRRPTDALKTARQQEALLDALWQTLKQGGRMLLATCSVFVEENDGQLQKFLNRHADAEPI 397
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQK 326
S LLP NK Q DGF+Y+L QK
Sbjct: 398 ESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|254672816|emb|CBA06959.1| Sun protein [Neisseria meningitidis alpha275]
Length = 419
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 124/326 (38%), Positives = 185/326 (56%), Gaps = 27/326 (8%)
Query: 3 NAILREFLRKKGEIFKS-KMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
NA+LR FLR++ ++ S K ++ + N P+WW+ +K YP W NI PP
Sbjct: 118 NAVLRRFLRERDKLVASCKKDDV--AKHNLPLWWVAYLKNHYPK--HWHNIAAALQSHPP 173
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+TLR+N+R SY + L G+ + A+ L + ++++P F +G S+QD A
Sbjct: 174 MTLRVNRRHGNAESYLEKLAAEGIAAKALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGA 233
Query: 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181
Q AA LL+ + G +LDAC+APGGKT H+LE+AD ++ ++D + RL + +N+ RL +
Sbjct: 234 QQAAYLLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQ 293
Query: 182 -ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A+ +D + +Y K FD ILAD+PCT SGV RRNPD+ W
Sbjct: 294 TASAACADARDLAA----------------WYDGKPFDAILADVPCTASGVARRNPDVKW 337
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR D K ++ +L+ LW+ LK GG++L TCS++ EE++ Q F H D+ +
Sbjct: 338 LRRPTDALKTARQQEALLDALWQTLKQGGRMLLATCSVFVEENDGQLQKFLNRHADAEPI 397
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQK 326
S LLP NK Q DGF+Y+L QK
Sbjct: 398 ESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|421556098|ref|ZP_16002015.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 80179]
gi|402337951|gb|EJU73190.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 80179]
Length = 419
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 125/325 (38%), Positives = 181/325 (55%), Gaps = 25/325 (7%)
Query: 3 NAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPPL 62
NAILR FLR++ E S + N P+WW+ +K YP W NI PP+
Sbjct: 118 NAILRRFLRER-EKLASSCKKDDVAKHNLPLWWVAYLKNHYPK--HWHNITAALQSHPPM 174
Query: 63 TLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAAQ 122
TLR+N+R SY + L G+ + A+ L + ++++P F +G S+QD AQ
Sbjct: 175 TLRVNRRHGNAESYLEKLAAEGIPARALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGAQ 234
Query: 123 LAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK- 181
AA LL+ + G +LDAC+APGGKT H+LE+AD ++ ++D + RL + +N+ RL +
Sbjct: 235 QAAYLLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQT 294
Query: 182 ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWL 241
A+ +D + +Y K FD ILAD+PCT SGV RRNPD+ WL
Sbjct: 295 ASAACADARDLAA----------------WYDGKPFDAILADVPCTASGVARRNPDVKWL 338
Query: 242 RRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLN 301
RR D K ++ +L+ LW+ LK GG++L TCS++ EE++ Q F H D+ +
Sbjct: 339 RRPTDALKTARQQEALLDALWQTLKQGGRMLLATCSVFVEENDGQLQKFLNRHADAEPIE 398
Query: 302 SPGQLLPTVNKKQDYDGFFYSLFQK 326
S LLP NK Q DGF+Y+L QK
Sbjct: 399 S-RVLLP--NKHQ--DGFYYALIQK 418
>gi|421750397|ref|ZP_16187625.1| rRNA SAM-dependent methyltransferase, partial [Cupriavidus necator
HPC(L)]
gi|409770548|gb|EKN53168.1| rRNA SAM-dependent methyltransferase, partial [Cupriavidus necator
HPC(L)]
Length = 233
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 111/248 (44%), Positives = 157/248 (63%), Gaps = 30/248 (12%)
Query: 94 AIKLHTPISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEI 153
A++L + ++++P F +G S+QDA AQLAAPLL+I G VLDAC+APGGKT HLLE+
Sbjct: 1 AVRLARALPVAQVPGFDSGEVSVQDAGAQLAAPLLEIADGQRVLDACAAPGGKTGHLLEL 60
Query: 154 ADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYK 213
AD++L +V+++ R I ENL RL+ +A +++ D S+ ++
Sbjct: 61 ADVELTAVESDAVRAQRIDENLARLHQRAQVVIGDASRPQA----------------WWD 104
Query: 214 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 273
K +DRILAD+PC+ SG+VRR+PDI WLRR++D+ KL +I++ LW +LKPGG L++
Sbjct: 105 GKQYDRILADVPCSASGIVRRHPDIRWLRRESDLGKLVNEQRRIVSQLWPLLKPGGILVY 164
Query: 274 VTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTV--------------NKKQDYDGF 319
VTCS++ E EEQA F D+IRL +PGQLLP D+DGF
Sbjct: 165 VTCSIFPTEGEEQARWFGAQLPDAIRLQAPGQLLPGSIPNGVADGGTGSHDGLPSDHDGF 224
Query: 320 FYSLFQKR 327
FY+ FQKR
Sbjct: 225 FYARFQKR 232
>gi|268593745|ref|ZP_06127912.1| 16S RNA methyltransferase [Neisseria gonorrhoeae 35/02]
gi|268683215|ref|ZP_06150077.1| 16S RNA methyltransferase [Neisseria gonorrhoeae SK-92-679]
gi|268547134|gb|EEZ42552.1| 16S RNA methyltransferase [Neisseria gonorrhoeae 35/02]
gi|268623499|gb|EEZ55899.1| 16S RNA methyltransferase [Neisseria gonorrhoeae SK-92-679]
Length = 419
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 124/325 (38%), Positives = 182/325 (56%), Gaps = 25/325 (7%)
Query: 3 NAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPPL 62
NA+LR FLR++ ++ S + Y N P+WW+ +K YP W NI PP+
Sbjct: 118 NAVLRRFLREREKLAASCKKDDVAKY-NLPLWWVAYLKNHYPK--HWHNIAAALQSHPPM 174
Query: 63 TLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAAQ 122
TLR+N+R SY + L G+ + A+ L + ++++P F G S+QD AQ
Sbjct: 175 TLRVNRRHGNAESYLEKLAVEGIAAKALDEYAVTLEEAVPVNRLPGFAEGLVSVQDFGAQ 234
Query: 123 LAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK- 181
AA LL+ + G +LDAC+APGGKT H+LE+AD ++ ++D + RL + +N+ RL +
Sbjct: 235 QAAYLLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQT 294
Query: 182 ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWL 241
A+ +D + +Y K FD ILAD+PCT SGV RRNPD+ WL
Sbjct: 295 ASAACADARDLAA----------------WYDGKPFDAILADVPCTASGVARRNPDVKWL 338
Query: 242 RRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLN 301
RR D K ++ +L+ LW+ LK GG++L TCS++ EE++ Q F H D+ +
Sbjct: 339 RRPTDALKTARRQEALLDALWQALKQGGRMLLATCSVFVEENDGQLQKFLNRHADAEPIE 398
Query: 302 SPGQLLPTVNKKQDYDGFFYSLFQK 326
S LLP NK Q DGF+Y+L QK
Sbjct: 399 SR-VLLP--NKHQ--DGFYYALIQK 418
>gi|194099888|ref|YP_002003025.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae
NCCP11945]
gi|193935178|gb|ACF31002.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae
NCCP11945]
Length = 417
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 124/325 (38%), Positives = 182/325 (56%), Gaps = 25/325 (7%)
Query: 3 NAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPPL 62
NA+LR FLR++ ++ S + Y N P+WW+ +K YP W NI PP+
Sbjct: 116 NAVLRRFLREREKLAASCKKDDVAKY-NLPLWWVAYLKNHYPK--HWHNIAAALQSHPPM 172
Query: 63 TLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAAQ 122
TLR+N+R SY + L G+ + A+ L + ++++P F G S+QD AQ
Sbjct: 173 TLRVNRRHGNAESYLEKLAVEGIAAKALDEYAVTLEEAVPVNRLPGFAEGLVSVQDFGAQ 232
Query: 123 LAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK- 181
AA LL+ + G +LDAC+APGGKT H+LE+AD ++ ++D + RL + +N+ RL +
Sbjct: 233 QAAYLLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQT 292
Query: 182 ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWL 241
A+ +D + +Y K FD ILAD+PCT SGV RRNPD+ WL
Sbjct: 293 ASAACADARDLAA----------------WYDGKPFDAILADVPCTASGVARRNPDVKWL 336
Query: 242 RRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLN 301
RR D K ++ +L+ LW+ LK GG++L TCS++ EE++ Q F H D+ +
Sbjct: 337 RRPTDALKTARRQEALLDALWQALKQGGRMLLATCSVFVEENDGQLQKFLNRHADAEPIE 396
Query: 302 SPGQLLPTVNKKQDYDGFFYSLFQK 326
S LLP NK Q DGF+Y+L QK
Sbjct: 397 SR-VLLP--NKHQ--DGFYYALIQK 416
>gi|333375986|ref|ZP_08467782.1| ribosomal RNA small subunit methyltransferase B [Kingella kingae
ATCC 23330]
gi|332969155|gb|EGK08187.1| ribosomal RNA small subunit methyltransferase B [Kingella kingae
ATCC 23330]
Length = 418
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 127/325 (39%), Positives = 191/325 (58%), Gaps = 24/325 (7%)
Query: 3 NAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPPL 62
NAILR F R++ + KS +N + + +N P W + ++ YP W N++ PPL
Sbjct: 118 NAILRRFQREQEGLNKSCQFN-NIAKFNLPTWLQSSLQTQYPK--HWHNMVTAFQSHPPL 174
Query: 63 TLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAAQ 122
TLR+N+R +Y LL+++G+ + AI++ TP+ ++++P+F NG S+QD AQ
Sbjct: 175 TLRVNRRHMNADAYLLLLEQAGIAAKKLDDYAIRITTPVPVNQLPQFANGAVSVQDWGAQ 234
Query: 123 LAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKA 182
AA LL+ ++G VLDAC+APGGKT HLLE+A+ + ++D + RL + +NL RL L+A
Sbjct: 235 QAAYLLNPQNGERVLDACAAPGGKTGHLLELANCSVTALDIDKKRLARVQDNLARLKLQA 294
Query: 183 TLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLR 242
L S N ++ FD ILAD+PCT SG ++RNPDI WLR
Sbjct: 295 ALYCS----------------PAQNLAEWWDGVPFDVILADVPCTASGTIKRNPDIKWLR 338
Query: 243 RKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS 302
R ND K ++ +L+ LWK LK GG++L TCS++ E++ Q F + H D+ L
Sbjct: 339 RPNDALKTAQQQEIMLDELWKTLKQGGRMLLATCSIFEAENQLQCQKFLRRHADATLLEE 398
Query: 303 PGQLLPTVNKKQDYDGFFYSLFQKR 327
L+P N+KQ DGF+Y+L K+
Sbjct: 399 K-VLIP--NEKQ--DGFYYALIHKK 418
>gi|254805842|ref|YP_003084063.1| Sun protein [Neisseria meningitidis alpha14]
gi|385850382|ref|YP_005896897.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis M04-240196]
gi|254669384|emb|CBA08529.1| Sun protein [Neisseria meningitidis alpha14]
gi|325205205|gb|ADZ00658.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis M04-240196]
Length = 419
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 124/325 (38%), Positives = 181/325 (55%), Gaps = 25/325 (7%)
Query: 3 NAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPPL 62
NA+LR FLR++ E S + N P+WW+ +K YP W NI PP+
Sbjct: 118 NAVLRRFLRER-EKLASSCKKDDVAKHNLPLWWVAYLKNHYPK--HWHNITAALQSHPPM 174
Query: 63 TLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAAQ 122
TLR+N+R SY + L G+ + A+ L + ++++P F +G S+QD AQ
Sbjct: 175 TLRVNRRHGNAESYLEKLAAEGIAAKALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGAQ 234
Query: 123 LAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK- 181
AA LL+ + G +LDAC+APGGKT H+LE+AD ++ ++D + RL + +N+ RL +
Sbjct: 235 QAAYLLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQT 294
Query: 182 ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWL 241
A+ +D + +Y K FD ILAD+PCT SGV RRNPD+ WL
Sbjct: 295 ASAACADARDLAA----------------WYDGKPFDAILADVPCTASGVARRNPDVKWL 338
Query: 242 RRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLN 301
RR D K ++ +L+ LW+ LK GG++L TCS++ EE++ Q F H D+ +
Sbjct: 339 RRPTDALKTARQQEALLDALWQTLKQGGRMLLATCSVFVEENDGQLQKFLNRHADAEPIE 398
Query: 302 SPGQLLPTVNKKQDYDGFFYSLFQK 326
S LLP NK Q DGF+Y+L QK
Sbjct: 399 SR-VLLP--NKHQ--DGFYYALIQK 418
>gi|385323263|ref|YP_005877702.1| ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase; 16S rRNA m5C967
methyltransferase) [Neisseria meningitidis 8013]
gi|261391650|emb|CAX49098.1| ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase; 16S rRNA m5C967
methyltransferase) [Neisseria meningitidis 8013]
Length = 419
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 124/326 (38%), Positives = 185/326 (56%), Gaps = 27/326 (8%)
Query: 3 NAILREFLRKKGEIFKS-KMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
NA+LR FLR++ ++ S K ++ + N P+WW+ +K YP W NI PP
Sbjct: 118 NAVLRRFLRERDKLAASCKKDDV--AKHNLPLWWVAYLKNHYPK--HWHNIAAALQSHPP 173
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+TLR+N+R SY + L G+ + A+ L + ++++P F +G S+QD A
Sbjct: 174 MTLRVNRRHGNAESYLEKLAAEGIAAKALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGA 233
Query: 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181
Q AA LL+ + G +LDAC+APGGKT H+LE+AD ++ ++D + RL + +N+ RL +
Sbjct: 234 QQAAYLLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQ 293
Query: 182 -ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A+ +D + +Y K FD ILAD+PCT SGV RRNPD+ W
Sbjct: 294 TASAACADARDLAA----------------WYDGKPFDAILADVPCTASGVARRNPDVKW 337
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR D K ++ +L+ LW+ LK GG++L TCS++ EE++ Q F H D+ +
Sbjct: 338 LRRPTDALKTARQQEALLDALWQTLKQGGRMLLATCSVFVEENDGQLQKFLNRHADAEPI 397
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQK 326
S LLP NK Q DGF+Y+L QK
Sbjct: 398 ESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|148826743|ref|YP_001291496.1| potassium transporter peripheral membrane component [Haemophilus
influenzae PittEE]
gi|148716903|gb|ABQ99113.1| potassium transporter peripheral membrane component [Haemophilus
influenzae PittEE]
Length = 451
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 132/340 (38%), Positives = 199/340 (58%), Gaps = 35/340 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
++NA+LR FLR++ EI I + W +P W++ ++K YPN W+ I++ ++
Sbjct: 132 LVNAVLRRFLREQDEILA-----IIDKNWQTLHPEWFVKKLKKAYPN---WREIIEANNQ 183
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLET-TIIGPLAIKLHTPISISKIPKFFNGFCSIQ 117
KPP+ LR+N +K L +Y LL++ G+ T P A+ L PI++ K+P F G ++Q
Sbjct: 184 KPPMWLRVNLQKNALETYRALLEEQGISAKTSHHPNALYLDIPIAVQKLPHFEEGAVTVQ 243
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
D +AQ AA LL+ ++ ++LDAC+APGGKT H+LE+A +I++D RL + ENL
Sbjct: 244 DLSAQWAATLLEPKNEEWILDACAAPGGKTTHILELAPQSNVIALDVETHRLKRVEENLA 303
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RLN +A ++ D SK + + +I+K FDRIL D PC+ +GV+RR+P
Sbjct: 304 RLNQQAIVVCGDASKPD--EWLAEISKSAVK---------FDRILLDAPCSATGVIRRHP 352
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR++ DI +L + KIL+ LW+ LKP G LL+ TCS+ EE+ EQ F H D
Sbjct: 353 DIKWLRKETDIAQLVELQKKILSALWEKLKPNGVLLYATCSVLPEENCEQIQEFLNAHAD 412
Query: 297 SIRLNSP---------GQLLPTVNKKQDYDGFFYSLFQKR 327
+ L+ P Q +P N DGF+Y+ KR
Sbjct: 413 AELLSLPFSDDKSAVGFQFIPQPNSG---DGFYYAKLLKR 449
>gi|433468310|ref|ZP_20425748.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 98080]
gi|432206646|gb|ELK62650.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 98080]
Length = 419
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 124/326 (38%), Positives = 185/326 (56%), Gaps = 27/326 (8%)
Query: 3 NAILREFLRKKGEIFKS-KMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
NA+LR FLR++ ++ S K ++ + N P+WW+ +K YP W NI PP
Sbjct: 118 NAVLRRFLRERDKLAASCKKDDV--AKHNLPLWWVAYLKNHYPK--HWHNIAAALQSHPP 173
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+TLR+N+R SY + L G+ + A+ L + ++++P F +G S+QD A
Sbjct: 174 MTLRVNRRHGNAESYLEKLAAEGIAAKALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGA 233
Query: 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181
Q AA LL+ + G +LDAC+APGGKT H+LE+AD ++ ++D + RL + +N+ RL +
Sbjct: 234 QQAAYLLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQ 293
Query: 182 -ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A+ +D + +Y K FD ILAD+PCT SGV RRNPD+ W
Sbjct: 294 TASAACADARDLAA----------------WYDGKPFDAILADVPCTASGVARRNPDVKW 337
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR D K ++ +L+ LW+ LK GG++L TCS++ EE++ Q F H D+ +
Sbjct: 338 LRRPTDALKTARQQEALLDALWQTLKQGGRMLLATCSVFVEENDGQLQKFLNRHADAEPI 397
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQK 326
S LLP NK Q DGF+Y+L QK
Sbjct: 398 ESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|373467156|ref|ZP_09558457.1| ribosomal RNA small subunit methyltransferase B [Haemophilus sp.
oral taxon 851 str. F0397]
gi|371759115|gb|EHO47861.1| ribosomal RNA small subunit methyltransferase B [Haemophilus sp.
oral taxon 851 str. F0397]
Length = 450
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 131/339 (38%), Positives = 199/339 (58%), Gaps = 35/339 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
++NA+LR FLR++ EI I + W +P W++N++K YPN W+ I++ ++
Sbjct: 132 LVNAVLRRFLREQDEILA-----IIDKNWQTLHPEWFVNKLKKAYPN---WREIIEANNQ 183
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLET-TIIGPLAIKLHTPISISKIPKFFNGFCSIQ 117
KPP+ LR+N +K L +Y LL++ G+ + T P A+ L PI++ K+P F +G ++Q
Sbjct: 184 KPPMWLRVNSQKNALKTYRTLLEEQGVSSKTSHHPNALCLDIPIAVQKLPHFEDGAVTVQ 243
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
D +AQ AA LL+ ++ ++LDAC+APGGKT H+LE+A +I++D RL + ENL
Sbjct: 244 DFSAQWAATLLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDIESHRLKRVEENLA 303
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RLN +A ++ D S+ + + +I K FDRIL D PC+ +GV+RR+P
Sbjct: 304 RLNQQAIVVCGDASQPD--EWLAEIGKSAVK---------FDRILLDAPCSATGVIRRHP 352
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR++ DI +L + KIL+ LW+ LKP G LL+ TCS+ EE+ EQ F H D
Sbjct: 353 DIKWLRKETDIAQLVELQKKILSALWEKLKPNGVLLYATCSVLPEENCEQIQAFLNAHTD 412
Query: 297 SIRLNSP---------GQLLPTVNKKQDYDGFFYSLFQK 326
+ L P Q +P N DGF+Y+ K
Sbjct: 413 AELLPLPFSDDKSAVGFQFIPQPNSG---DGFYYAKLHK 448
>gi|416159205|ref|ZP_11605681.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis N1568]
gi|325129148|gb|EGC51996.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis N1568]
Length = 419
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 125/326 (38%), Positives = 185/326 (56%), Gaps = 27/326 (8%)
Query: 3 NAILREFLRKKGEIFKS-KMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
NAILR FLR++ ++ S K ++ + N P+WW+ +K YP W NI PP
Sbjct: 118 NAILRRFLRERDKLAASCKKDDV--AKHNLPLWWVAYLKNHYPK--HWHNITAALQSHPP 173
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+TLR+N+R SY + L G+ + A+ L + ++++P F +G S+QD A
Sbjct: 174 MTLRVNRRHGNAESYLEKLAAEGIPARALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGA 233
Query: 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181
Q AA LL+ + G +LDAC+APGGKT H+LE+AD ++ ++D + RL + +N+ RL +
Sbjct: 234 QQAAYLLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQ 293
Query: 182 -ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A+ +D + +Y K FD ILAD+PCT SGV RRNPD+ W
Sbjct: 294 TASAACADARDLAA----------------WYDGKPFDAILADVPCTASGVARRNPDVKW 337
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR D K ++ +L+ LW+ LK GG++L TCS++ EE++ Q F H D+ +
Sbjct: 338 LRRPTDALKTARQQEALLDALWQTLKQGGRMLLATCSVFVEENDGQLQKFLNRHADAEPI 397
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQK 326
S LLP NK Q DGF+Y+L QK
Sbjct: 398 ESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|385327478|ref|YP_005881781.1| rsmB 16S RNA methyltransferase [Neisseria meningitidis alpha710]
gi|308388330|gb|ADO30650.1| rsmB 16S RNA methyltransferase [Neisseria meningitidis alpha710]
Length = 419
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 124/326 (38%), Positives = 185/326 (56%), Gaps = 27/326 (8%)
Query: 3 NAILREFLRKKGEIFKS-KMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
NA+LR FLR++ ++ S K ++ + N P+WW+ +K YP W NI PP
Sbjct: 118 NAVLRRFLRERDKLAASCKKDDV--AKHNLPLWWVAYLKNHYPK--HWHNITAALQSHPP 173
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+TLR+N+R SY + L G+ + A+ L + ++++P F +G S+QD A
Sbjct: 174 MTLRVNRRHGNAESYLEKLAAEGIAAKALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGA 233
Query: 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181
Q AA LL+ + G +LDAC+APGGKT H+LE+AD ++ ++D + RL + +N+ RL +
Sbjct: 234 QQAAYLLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQ 293
Query: 182 -ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A+ +D + +Y K FD ILAD+PCT SGV RRNPD+ W
Sbjct: 294 TASAACADARDLAA----------------WYDGKPFDAILADVPCTASGVARRNPDVKW 337
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR D K ++ +L+ LW+ LK GG++L TCS++ EE++ Q F H D+ +
Sbjct: 338 LRRPTDALKTARQQEALLDALWQTLKQGGRMLLATCSVFVEENDGQLQKFLNRHADAEPI 397
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQK 326
S LLP NK Q DGF+Y+L QK
Sbjct: 398 ESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|261378986|ref|ZP_05983559.1| ribosomal RNA small subunit methyltransferase B [Neisseria cinerea
ATCC 14685]
gi|269144601|gb|EEZ71019.1| ribosomal RNA small subunit methyltransferase B [Neisseria cinerea
ATCC 14685]
Length = 419
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 124/327 (37%), Positives = 187/327 (57%), Gaps = 27/327 (8%)
Query: 3 NAILREFLRKKGEIFKS-KMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
NAILR FLR++ ++ S K ++ + N P+WW+ +K YP W NI PP
Sbjct: 118 NAILRRFLRERDKLAASCKKDDV--AKHNLPLWWVAYLKSHYPK--HWHNITAALQSHPP 173
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+TLR+N+R SY + L G+ + A+ L + ++++P F +G S+QD A
Sbjct: 174 MTLRVNRRHGNAESYLEKLAAEGIAAKDLDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGA 233
Query: 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181
Q AA LL+ + G +LDAC+APGGKT H+LE+AD ++ ++D + RL + +N+ RL +
Sbjct: 234 QQAAYLLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQ 293
Query: 182 -ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A+ +D + +Y K FD +LAD+PCT SGV RRNPD+ W
Sbjct: 294 TASTACADAQDLPA----------------WYDGKPFDAVLADVPCTASGVARRNPDVKW 337
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR D K ++ +L+ LW++LK GG++L TCS++ EE++ Q F H D+ +
Sbjct: 338 LRRPTDGMKTARQQEALLDALWQVLKSGGRMLIATCSVFVEENDGQLQKFLNRHADAELI 397
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQKR 327
S LLP NK Q DGF+Y+L QK+
Sbjct: 398 ESR-VLLP--NKHQ--DGFYYALIQKQ 419
>gi|422110716|ref|ZP_16380630.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309378544|emb|CBX22816.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 419
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 124/326 (38%), Positives = 186/326 (57%), Gaps = 27/326 (8%)
Query: 3 NAILREFLRKKGEIFKS-KMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
NA+LR FLR++ ++ S K ++ + N P+WW+ +K YP + W NI PP
Sbjct: 118 NAVLRRFLREREKLAASCKKDDV--AKHNLPLWWVAYLKNHYPKY--WHNITAALQSHPP 173
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+TLR+N+R SY + L G+ + A+ L + ++++P F +G S+QD A
Sbjct: 174 MTLRVNRRHGNAESYLEKLVAEGIAAKALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGA 233
Query: 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181
Q AA LL+ + G +LDAC+APGGKT H+LE+AD ++ ++D + RL + +N+ RL +
Sbjct: 234 QQAAYLLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQ 293
Query: 182 -ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A+ +D + +Y K FD ILAD+PCT SGV RRNPD+ W
Sbjct: 294 TASAACADARDLAA----------------WYDGKPFDAILADVPCTASGVARRNPDVKW 337
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR D K ++ +L+ LW+ LK GG++L TCS++ EE++ Q F H D+ +
Sbjct: 338 LRRPTDALKTARQQEALLDALWQTLKQGGRMLLATCSVFVEENDGQLQKFLSRHNDAEPI 397
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQK 326
S LLP NK Q DGF+Y+L QK
Sbjct: 398 ESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|304388913|ref|ZP_07370960.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis ATCC 13091]
gi|385854290|ref|YP_005900803.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis M01-240355]
gi|418289565|ref|ZP_12901834.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM220]
gi|421541457|ref|ZP_15987574.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM255]
gi|421562339|ref|ZP_16008166.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM2795]
gi|304337047|gb|EFM03234.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis ATCC 13091]
gi|325203231|gb|ADY98684.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis M01-240355]
gi|372203320|gb|EHP17019.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM220]
gi|402319826|gb|EJU55330.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM255]
gi|402342995|gb|EJU78150.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM2795]
Length = 419
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 124/326 (38%), Positives = 185/326 (56%), Gaps = 27/326 (8%)
Query: 3 NAILREFLRKKGEIFKS-KMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
NA+LR FLR++ ++ S K ++ + N P+WW+ +K YP W NI PP
Sbjct: 118 NAVLRRFLRERDKLAASCKKDDV--AKHNLPLWWVAYLKNHYPK--HWHNITAALQSHPP 173
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+TLR+N+R SY + L G+ + A+ L + ++++P F +G S+QD A
Sbjct: 174 MTLRVNRRHGNAESYLEKLAAEGIAAKALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGA 233
Query: 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181
Q AA LL+ + G +LDAC+APGGKT H+LE+AD ++ ++D + RL + +N+ RL +
Sbjct: 234 QQAAYLLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQ 293
Query: 182 -ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A+ +D + +Y K FD ILAD+PCT SGV RRNPD+ W
Sbjct: 294 TASAACADARDLAA----------------WYDGKPFDAILADVPCTASGVARRNPDVKW 337
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR D K ++ +L+ LW+ LK GG++L TCS++ EE++ Q F H D+ +
Sbjct: 338 LRRPTDALKTARQQEALLDALWQTLKQGGRMLLATCSVFVEENDGQLQKFLNRHADAEPI 397
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQK 326
S LLP NK Q DGF+Y+L QK
Sbjct: 398 ESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|161870942|ref|YP_001600122.1| 16S RNA methyltransferase [Neisseria meningitidis 053442]
gi|161596495|gb|ABX74155.1| 16S RNA methyltransferase [Neisseria meningitidis 053442]
Length = 419
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 124/326 (38%), Positives = 185/326 (56%), Gaps = 27/326 (8%)
Query: 3 NAILREFLRKKGEIFKS-KMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
NA+LR FLR++ ++ S K ++ + N P+WW+ +K YP W NI PP
Sbjct: 118 NAVLRRFLRERDKLAASCKKDDV--AKHNLPLWWVAYLKNHYPK--HWHNITAALQSHPP 173
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+TLR+N+R SY + L G+ + A+ L + ++++P F +G S+QD A
Sbjct: 174 MTLRVNRRHGNAESYLEKLAAEGIAAKALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGA 233
Query: 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181
Q AA LL+ + G +LDAC+APGGKT H+LE+AD ++ ++D + RL + +N+ RL +
Sbjct: 234 QQAAYLLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQ 293
Query: 182 -ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A+ +D + +Y K FD ILAD+PCT SGV RRNPD+ W
Sbjct: 294 TASAACADARDLAA----------------WYDGKPFDAILADVPCTASGVARRNPDVKW 337
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR D K ++ +L+ LW+ LK GG++L TCS++ EE++ Q F H D+ +
Sbjct: 338 LRRPTDALKTARQQEALLDALWQTLKQGGRMLLATCSVFVEENDGQLQKFLNRHADAEPI 397
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQK 326
S LLP NK Q DGF+Y+L QK
Sbjct: 398 ESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|421549671|ref|ZP_15995681.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 69166]
gi|433470413|ref|ZP_20427813.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 68094]
gi|433476689|ref|ZP_20434017.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 70012]
gi|433520899|ref|ZP_20477601.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 61103]
gi|433525191|ref|ZP_20481837.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 69096]
gi|433537872|ref|ZP_20494359.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 70030]
gi|402331622|gb|EJU66954.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 69166]
gi|432211846|gb|ELK67790.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 68094]
gi|432217842|gb|ELK73707.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 70012]
gi|432262683|gb|ELL17918.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 61103]
gi|432263339|gb|ELL18559.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 69096]
gi|432276012|gb|ELL31074.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 70030]
Length = 419
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 124/325 (38%), Positives = 181/325 (55%), Gaps = 25/325 (7%)
Query: 3 NAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPPL 62
NA+LR FLR++ E S + N P+WW+ +K YP W NI PP+
Sbjct: 118 NAVLRRFLRER-EKLASSCKKDDVAKHNLPLWWVAYLKNHYPK--HWHNITAALQSHPPM 174
Query: 63 TLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAAQ 122
TLR+N+R SY + L G+ + A+ L + ++++P F +G S+QD AQ
Sbjct: 175 TLRVNRRHGNAESYLEKLAAEGIPARALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGAQ 234
Query: 123 LAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK- 181
AA LL+ + G +LDAC+APGGKT H+LE+AD ++ ++D + RL + +N+ RL +
Sbjct: 235 QAAYLLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQT 294
Query: 182 ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWL 241
A+ +D + +Y K FD ILAD+PCT SGV RRNPD+ WL
Sbjct: 295 ASAACADARDLAA----------------WYDGKPFDAILADVPCTASGVARRNPDVKWL 338
Query: 242 RRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLN 301
RR D K ++ +L+ LW+ LK GG++L TCS++ EE++ Q F H D+ +
Sbjct: 339 RRPTDALKTARQQEALLDALWQTLKQGGRMLLATCSVFVEENDGQLQKFLNRHADAEPIE 398
Query: 302 SPGQLLPTVNKKQDYDGFFYSLFQK 326
S LLP NK Q DGF+Y+L QK
Sbjct: 399 SR-VLLP--NKHQ--DGFYYALIQK 418
>gi|407937150|ref|YP_006852791.1| 16S rRNA methyltransferase B [Acidovorax sp. KKS102]
gi|407894944|gb|AFU44153.1| 16S rRNA methyltransferase B [Acidovorax sp. KKS102]
Length = 442
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 125/349 (35%), Positives = 198/349 (56%), Gaps = 40/349 (11%)
Query: 2 INAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
IN LR FLR++ + + N + WN+P WW+ +++ +P W+ IL + P
Sbjct: 113 INGCLRRFLRER-DALVAATDNDPVARWNHPAWWVQRLRKDHPQ--HWEQILQANNAHAP 169
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+ LR+N++K T+ Y L LE + +G + LH + + +P F G+ S+QDAAA
Sbjct: 170 MVLRVNEQKCTVAQYLHALDAINLEASAVGEHGVALHQAVPVQSLPHFAEGWVSVQDAAA 229
Query: 122 QLAAPL----LDIRSGMYVLDACSAPGGKTCHLLEIAD----IKLISVDNNLSRLNMISE 173
Q AAPL LD+ + VLDAC+APGGKT HLLE+A +++ +++ + +R I +
Sbjct: 230 QQAAPLLLQGLDLSQPLRVLDACAAPGGKTAHLLEMAGPQSPLQVTALEIDATRSARIGD 289
Query: 174 NLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNK----YFDRILADLPCTGS 229
L+RL LKA ++++D ++ +++++ FD IL D PCT S
Sbjct: 290 TLERLGLKAQVLVADAARPQ----------------DWWQSECGGVLFDAILLDAPCTAS 333
Query: 230 GVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAII 289
G+VRR+PD+ WLRR++DI +L+ +L LW +L+PGG+LL+ TCS++ E + Q
Sbjct: 334 GIVRRHPDVRWLRRESDIAQLATLQAALLKALWPLLRPGGRLLYCTCSVFRAEGDAQVQT 393
Query: 290 FSKNHKDSIRLNSPGQLLPTVNKK---------QDYDGFFYSLFQKRKE 329
F ++ D+ L SPG L+P K D+DGFFY+L QK +
Sbjct: 394 FLAHNTDARLLPSPGHLIPGNADKGWAVPDNLIGDHDGFFYALLQKSAQ 442
>gi|410695210|ref|YP_003625832.1| putative rsmB (sun protein) (Fmu, rRNA SAM-dependent
methyltransferase) [Thiomonas sp. 3As]
gi|294341635|emb|CAZ90052.1| putative rsmB (sun protein) (Fmu, rRNA SAM-dependent
methyltransferase) [Thiomonas sp. 3As]
Length = 459
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 133/341 (39%), Positives = 197/341 (57%), Gaps = 36/341 (10%)
Query: 3 NAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPPL 62
NA+LR F+ + +I +M + E+ WN+P WW+ ++ YP W+++L+V ++P +
Sbjct: 136 NALLRRFVSRTADIEAVRMSTL-EARWNHPDWWVQALQSAYPA--DWQSVLEVAQRQPAM 192
Query: 63 TLRINQRKTTLISYNKLLKKSGLETTIIG-PL---AIKLHTPISISKIPKFFNGFCSIQD 118
TLR+N R + +Y L GL T PL A+ L +++ ++P F G+ S+QD
Sbjct: 193 TLRVNPRLQSRTAYQAALAACGLPCTAPDDPLLDQALILKQAVAVERLPGFERGWVSVQD 252
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRL 178
AAAQ AA LLD++ G VLDAC+APGGKT HLLE D L+++D + RL + + L RL
Sbjct: 253 AAAQYAAALLDVQPGQRVLDACAAPGGKTAHLLERCDCDLLALDKDAQRLRRVEDTLDRL 312
Query: 179 NLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDI 238
L+A + +D + + ++ + FDRIL D PC+ SG+ RR+PDI
Sbjct: 313 GLQARTLAADAA----------------HPATWWDGQPFDRILLDAPCSASGIARRHPDI 356
Query: 239 PWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSI 298
WLRR DI L+ +L+ LW +L+PGGKLL+VTCS++ +E EQA F + D+I
Sbjct: 357 RWLRRAADIPALAATQAALLDALWPLLRPGGKLLYVTCSVFPQEGVEQARAFLARYADAI 416
Query: 299 RLNSPGQLL---PTVNKKQD----------YDGFFYSLFQK 326
+PGQLL P ++ D DGFFY+LF K
Sbjct: 417 ASPAPGQLLPQEPAPDQTGDEPGPGAAIHSQDGFFYALFTK 457
>gi|421907680|ref|ZP_16337555.1| Ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis alpha704]
gi|393291349|emb|CCI73554.1| Ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis alpha704]
Length = 419
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 124/326 (38%), Positives = 185/326 (56%), Gaps = 27/326 (8%)
Query: 3 NAILREFLRKKGEIFKS-KMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
NA+LR FLR++ ++ S K ++ + N P+WW+ +K YP W NI PP
Sbjct: 118 NAVLRRFLRERDKLAASCKKDDV--AKHNLPLWWVAYLKNHYPK--HWHNITAALQSHPP 173
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+TLR+N+R SY + L G+ + A+ L + ++++P F +G S+QD A
Sbjct: 174 MTLRVNRRHGNAESYLEKLAAEGIAAKALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGA 233
Query: 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181
Q AA LL+ + G +LDAC+APGGKT H+LE+AD ++ ++D + RL + +N+ RL +
Sbjct: 234 QQAAYLLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQ 293
Query: 182 -ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A+ +D + +Y K FD ILAD+PCT SGV RRNPD+ W
Sbjct: 294 TASAACADARDLAA----------------WYDGKPFDTILADVPCTASGVARRNPDVKW 337
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR D K ++ +L+ LW+ LK GG++L TCS++ EE++ Q F H D+ +
Sbjct: 338 LRRPTDALKTARQQEALLDALWQTLKQGGRMLLATCSVFVEENDGQLQKFLNRHADAEPI 397
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQK 326
S LLP NK Q DGF+Y+L QK
Sbjct: 398 ESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|433535712|ref|ZP_20492232.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 77221]
gi|432276723|gb|ELL31778.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 77221]
Length = 419
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 124/325 (38%), Positives = 181/325 (55%), Gaps = 25/325 (7%)
Query: 3 NAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPPL 62
NA+LR FLR++ E S + N P+WW+ +K YP W NI PP+
Sbjct: 118 NAVLRRFLRER-EKLASSCKKDDVAKHNLPLWWVAYLKNHYPK--HWHNITAALQSHPPM 174
Query: 63 TLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAAQ 122
TLR+N+R SY + L G+ + A+ L + ++++P F +G S+QD AQ
Sbjct: 175 TLRVNRRHGNAESYLEKLAAEGIAAKALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGAQ 234
Query: 123 LAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK- 181
AA LL+ + G +LDAC+APGGKT H+LE+AD ++ ++D + RL + +N+ RL +
Sbjct: 235 QAAYLLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQT 294
Query: 182 ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWL 241
A+ +D + +Y K FD ILAD+PCT SGV RRNPD+ WL
Sbjct: 295 ASEACADARDLAA----------------WYDGKPFDAILADVPCTASGVARRNPDVKWL 338
Query: 242 RRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLN 301
RR D K ++ +L+ LW+ LK GG++L TCS++ EE++ Q F H D+ +
Sbjct: 339 RRPTDALKTARQQEALLDALWQTLKQGGRMLLATCSVFVEENDGQLQKFLNRHADAEPIE 398
Query: 302 SPGQLLPTVNKKQDYDGFFYSLFQK 326
S LLP NK Q DGF+Y+L QK
Sbjct: 399 SR-VLLP--NKHQ--DGFYYALIQK 418
>gi|121633990|ref|YP_974235.1| SUN-family protein [Neisseria meningitidis FAM18]
gi|385339157|ref|YP_005893029.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis G2136]
gi|416176244|ref|ZP_11609545.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis M6190]
gi|416190860|ref|ZP_11615971.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis ES14902]
gi|416199749|ref|ZP_11619458.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 961-5945]
gi|421539309|ref|ZP_15985471.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 93004]
gi|421560264|ref|ZP_16006123.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM2657]
gi|433466229|ref|ZP_20423692.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 87255]
gi|433491585|ref|ZP_20448688.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM586]
gi|433493707|ref|ZP_20450783.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM762]
gi|433495823|ref|ZP_20452872.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis M7089]
gi|433497823|ref|ZP_20454840.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis M7124]
gi|433499895|ref|ZP_20456888.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM174]
gi|433501993|ref|ZP_20458966.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM126]
gi|120865696|emb|CAM09423.1| SUN-family protein [Neisseria meningitidis FAM18]
gi|254671147|emb|CBA08200.1| Sun protein [Neisseria meningitidis alpha153]
gi|325133179|gb|EGC55850.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis M6190]
gi|325138791|gb|EGC61343.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis ES14902]
gi|325143273|gb|EGC65611.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 961-5945]
gi|325197401|gb|ADY92857.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis G2136]
gi|402321889|gb|EJU57360.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 93004]
gi|402340437|gb|EJU75637.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM2657]
gi|432205017|gb|ELK61048.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 87255]
gi|432231270|gb|ELK86937.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM586]
gi|432231885|gb|ELK87540.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM762]
gi|432237006|gb|ELK92606.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis M7124]
gi|432237465|gb|ELK93058.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis M7089]
gi|432237963|gb|ELK93548.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM174]
gi|432243748|gb|ELK99254.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM126]
Length = 419
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 125/326 (38%), Positives = 185/326 (56%), Gaps = 27/326 (8%)
Query: 3 NAILREFLRKKGEIFKS-KMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
NAILR FLR++ ++ S K ++ + N P+WW+ +K YP W NI PP
Sbjct: 118 NAILRRFLRERDKLAASCKKDDV--AKHNLPLWWVAYLKNHYPK--HWHNITAALQSHPP 173
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+TLR+N+R SY + L G+ + A+ L + ++++P F +G S+QD A
Sbjct: 174 MTLRVNRRHGNAESYLEKLAAEGIPARALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGA 233
Query: 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181
Q AA LL+ + G +LDAC+APGGKT H+LE+AD ++ ++D + RL + +N+ RL +
Sbjct: 234 QQAAYLLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQ 293
Query: 182 -ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A+ +D + +Y K FD ILAD+PCT SGV RRNPD+ W
Sbjct: 294 TASAACADARDLAA----------------WYDGKPFDAILADVPCTASGVARRNPDVKW 337
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR D K ++ +L+ LW+ LK GG++L TCS++ EE++ Q F H D+ +
Sbjct: 338 LRRPTDALKTARQQEALLDALWQTLKQGGRMLLATCSVFVEENDGQLQKFLNRHADAEPI 397
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQK 326
S LLP NK Q DGF+Y+L QK
Sbjct: 398 ESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|417841175|ref|ZP_12487280.1| Ribosomal RNA small subunit methyltransferase B [Haemophilus
haemolyticus M19501]
gi|417841949|ref|ZP_12488044.1| Ribosomal RNA small subunit methyltransferase B [Haemophilus
haemolyticus M19501]
gi|341947729|gb|EGT74370.1| Ribosomal RNA small subunit methyltransferase B [Haemophilus
haemolyticus M19501]
gi|341949769|gb|EGT76370.1| Ribosomal RNA small subunit methyltransferase B [Haemophilus
haemolyticus M19501]
Length = 451
Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 132/340 (38%), Positives = 199/340 (58%), Gaps = 35/340 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
++NA+LR FLR++ EI I + W + W++N++K YPN W+ I++ ++
Sbjct: 132 LVNAVLRRFLREQDEILA-----IIDKNWQTLHSEWFVNKLKKAYPN---WREIIEENNQ 183
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLET-TIIGPLAIKLHTPISISKIPKFFNGFCSIQ 117
KPP+ LR+N +K +L +Y LL++ G+ T P A+ L PI++ K+P F G ++Q
Sbjct: 184 KPPMWLRVNSQKNSLETYRTLLEEQGISAKTSHHPNALCLDIPIAVQKLPHFEEGAVTVQ 243
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
D +AQ AA LL+ ++ ++LDAC+APGGKT H+LE+A +I++D RL + ENL
Sbjct: 244 DLSAQWAATLLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLA 303
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RLN +A ++ D SK + + +I K FDRIL D PC+ +GV+RR+P
Sbjct: 304 RLNQQAIVVCGDASKPD--EWLAEIGKSAVK---------FDRILLDAPCSATGVIRRHP 352
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR++ DI +L + KIL+ LW+ LKP G LL+ TCS+ EE+ EQ F H D
Sbjct: 353 DIKWLRKETDIAQLVELQKKILSALWEKLKPNGVLLYATCSVLPEENCEQIQAFLNAHAD 412
Query: 297 SIRLNSP---------GQLLPTVNKKQDYDGFFYSLFQKR 327
+ L+ P Q +P N DGF+Y+ KR
Sbjct: 413 AELLSLPFSDDKSAVGFQFIPQPNSG---DGFYYAKLLKR 449
>gi|421543514|ref|ZP_15989605.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM140]
gi|421545574|ref|ZP_15991634.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM183]
gi|421547643|ref|ZP_15993675.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM2781]
gi|421551850|ref|ZP_15997832.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM576]
gi|402325802|gb|EJU61209.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM183]
gi|402326356|gb|EJU61758.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM140]
gi|402327663|gb|EJU63050.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM2781]
gi|402333118|gb|EJU68433.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM576]
Length = 419
Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 124/326 (38%), Positives = 185/326 (56%), Gaps = 27/326 (8%)
Query: 3 NAILREFLRKKGEIFKS-KMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
NA+LR FLR++ ++ S K ++ + N P+WW+ +K YP W NI PP
Sbjct: 118 NAVLRRFLRERDKLAASCKKDDV--AKHNLPLWWVAYLKNHYPK--HWHNITAALQSHPP 173
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+TLR+N+R SY + L G+ + A+ L + ++++P F +G S+QD A
Sbjct: 174 MTLRVNRRHGNAESYLEKLAAEGIAAKALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGA 233
Query: 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181
Q AA LL+ + G +LDAC+APGGKT H+LE+AD ++ ++D + RL + +N+ RL +
Sbjct: 234 QQAAYLLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQ 293
Query: 182 -ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A+ +D + +Y K FD ILAD+PCT SGV RRNPD+ W
Sbjct: 294 TASAACADARDLAA----------------WYDGKPFDTILADVPCTASGVARRNPDVKW 337
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR D K ++ +L+ LW+ LK GG++L TCS++ EE++ Q F H D+ +
Sbjct: 338 LRRPTDALKTARQQEALLDALWQTLKQGGRMLLATCSVFVEENDGQLQKFLNRHADAEPI 397
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQK 326
S LLP NK Q DGF+Y+L QK
Sbjct: 398 ESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|261380548|ref|ZP_05985121.1| ribosomal RNA small subunit methyltransferase B [Neisseria subflava
NJ9703]
gi|284796516|gb|EFC51863.1| ribosomal RNA small subunit methyltransferase B [Neisseria subflava
NJ9703]
Length = 419
Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 126/327 (38%), Positives = 184/327 (56%), Gaps = 27/327 (8%)
Query: 3 NAILREFLRKKGEIFKS-KMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
NAILR FLR++ ++ S K ++ + N P+WW+ +K YP W NI PP
Sbjct: 118 NAILRRFLRERDKLAASCKKDDV--AKHNLPLWWVAYLKNHYPK--HWHNITTALQSHPP 173
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+TLR+N+R SY + L G+ + A+ L + +S++P F +G S+QD A
Sbjct: 174 MTLRVNRRHGNAESYLEKLAAEGIAARALDEYAVMLEEAVPVSRLPGFSDGLVSVQDFGA 233
Query: 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL- 180
Q AA LL+ + G +LDAC+APGGKT H+LE+AD + ++D + RLN + NL RL
Sbjct: 234 QRAAYLLNPKDGERILDACAAPGGKTGHILELADCHVTALDIDEGRLNRVKSNLDRLGFQ 293
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
KA+L +D + +Y K FD +LAD+PCT SGV RRNPD+ W
Sbjct: 294 KASLTCADAQDLAA----------------WYDGKTFDAVLADVPCTASGVARRNPDVKW 337
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR D K ++ +L+ LW+ L G++L TCS++ EE++ Q F H D+ +
Sbjct: 338 LRRPTDAVKTARQQEALLDALWQTLTKNGRMLLATCSVFVEENDGQLQKFLNRHADAELI 397
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQKR 327
S LLP NK Q DGF+Y+L +K+
Sbjct: 398 ES-HVLLP--NKHQ--DGFYYALIKKQ 419
>gi|145629884|ref|ZP_01785676.1| potassium transporter peripheral membrane component [Haemophilus
influenzae 22.1-21]
gi|144977738|gb|EDJ87685.1| potassium transporter peripheral membrane component [Haemophilus
influenzae 22.1-21]
Length = 450
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 132/340 (38%), Positives = 197/340 (57%), Gaps = 35/340 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
++NA+LR FLR++ EI I + W +P W++ ++K YPN W+ I++ ++
Sbjct: 132 LVNAVLRRFLREQDEILA-----IIDKNWQTLHPEWFVKKLKKAYPN---WREIIEANNQ 183
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLE-TTIIGPLAIKLHTPISISKIPKFFNGFCSIQ 117
KPP+ LR+N +K L +Y LL++ G+ T P A+ L PI++ K+P F G ++Q
Sbjct: 184 KPPMWLRVNSQKNALETYRTLLEEQGVSLKTSHHPNALCLDIPIAVQKLPHFEEGAVTVQ 243
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
D +AQ AA LL+ ++ ++LDAC+APGGKT H+LE+A +I++D RL + ENL
Sbjct: 244 DLSAQWAAMLLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLA 303
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RLN +A ++ D SK + + +I K FDRIL D PC+ +GV+RR+P
Sbjct: 304 RLNQQAIVVCGDASKPD--EWLAEIGKSAVK---------FDRILLDAPCSATGVIRRHP 352
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR++ DI +L + KIL+ LW+ LKP G LL+ TCS+ EE+ EQ F H D
Sbjct: 353 DIKWLRKETDIAQLVELQRKILSALWEKLKPNGVLLYATCSVLPEENGEQIQAFLNAHAD 412
Query: 297 SIRLNSP---------GQLLPTVNKKQDYDGFFYSLFQKR 327
+ L P Q +P N DGF+Y+ KR
Sbjct: 413 AELLPLPFSDDKSAVGFQFIPQPNSG---DGFYYAKLLKR 449
>gi|319761189|ref|YP_004125126.1| sun protein [Alicycliphilus denitrificans BC]
gi|330823049|ref|YP_004386352.1| sun protein [Alicycliphilus denitrificans K601]
gi|317115750|gb|ADU98238.1| sun protein [Alicycliphilus denitrificans BC]
gi|329308421|gb|AEB82836.1| sun protein [Alicycliphilus denitrificans K601]
Length = 455
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 123/343 (35%), Positives = 193/343 (56%), Gaps = 33/343 (9%)
Query: 2 INAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
INA LR FLR++ E + + WN+P WWI +++ +P W+ IL + P
Sbjct: 126 INACLRRFLRER-EGLVAATQGDETAVWNHPAWWIQRLRRDHPQC--WQQILQANNAPAP 182
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+ LR+ ++K+T Y K L +E+T +G + L P+ + ++P F G S+QDAAA
Sbjct: 183 MVLRVARQKSTSALYQKALAAINIESTAVGGWGVVLARPVPVQRLPGFDEGVVSVQDAAA 242
Query: 122 QLAAPLL----DIRSGMYVLDACSAPGGKTCHLLEIADI-----KLISVDNNLSRLNMIS 172
Q+AAPLL D + +LDAC+APGGKT HLLE A ++ +++ ++ R I
Sbjct: 243 QMAAPLLLDGLDAGKSLRLLDACAAPGGKTAHLLEWAAALQAPWQVTALEVDVVRAERIH 302
Query: 173 ENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVV 232
+NL+RL L A ++++D + + + + + FD IL D PCT SG+V
Sbjct: 303 DNLRRLGLSAQVLVADAGR---PEAWWQ---------QASGGEPFDAILLDAPCTASGIV 350
Query: 233 RRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSK 292
RR+PD+ WLRR++D+ +L+ ++L LW +LKPGG++L+ TCS++ E + Q F
Sbjct: 351 RRHPDVRWLRRESDVAQLAALQARLLAALWPLLKPGGRMLYCTCSVFRAEGDAQIQAFLA 410
Query: 293 NHKDSIRLNSPGQLLPTV---------NKKQDYDGFFYSLFQK 326
++ D+ L S G L P N ++DGFFY+L QK
Sbjct: 411 HNTDARLLPSAGHLFPGSPDKHGALRDNGPGEHDGFFYALLQK 453
>gi|261400037|ref|ZP_05986162.1| ribosomal RNA small subunit methyltransferase B [Neisseria
lactamica ATCC 23970]
gi|269210259|gb|EEZ76714.1| ribosomal RNA small subunit methyltransferase B [Neisseria
lactamica ATCC 23970]
Length = 419
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 124/326 (38%), Positives = 185/326 (56%), Gaps = 27/326 (8%)
Query: 3 NAILREFLRKKGEIFKS-KMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
NA+LR FLR++ ++ S K ++ + N P+WW+ +K YP W NI PP
Sbjct: 118 NAVLRRFLRERDKLVASCKKDDV--AKHNLPLWWVAYLKNHYPK--HWHNITAALQSHPP 173
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+TLR+N+R SY + L G+ + A+ L + ++++P F +G S+QD A
Sbjct: 174 MTLRVNRRHGNAESYLEKLVAEGIAAKALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGA 233
Query: 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181
Q AA LL+ + G +LDAC+APGGKT H+LE+AD ++ ++D + RL + +N+ RL +
Sbjct: 234 QQAAYLLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQ 293
Query: 182 -ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A+ +D + +Y K FD ILAD+PCT SGV RRNPD+ W
Sbjct: 294 TASTACADARDLAA----------------WYDGKPFDAILADVPCTASGVARRNPDVKW 337
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR D K ++ +L+ LW+ LK GG++L TCS++ EE++ Q F H D+ +
Sbjct: 338 LRRPTDALKTARQQEALLDALWQTLKQGGRMLLATCSVFVEENDGQLQKFLSRHNDAEPI 397
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQK 326
S LLP NK Q DGF+Y+L QK
Sbjct: 398 ESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|421558163|ref|ZP_16004047.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 92045]
gi|402338557|gb|EJU73788.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 92045]
Length = 419
Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 125/326 (38%), Positives = 185/326 (56%), Gaps = 27/326 (8%)
Query: 3 NAILREFLRKKGEIFKS-KMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
NAILR FLR++ ++ S K ++ + N P+WW+ +K YP W NI PP
Sbjct: 118 NAILRRFLRERDKLAASCKKDDV--AKHNLPLWWVAYLKNHYPK--HWHNITAALQSHPP 173
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+TLR+N+R SY + L G+ + A+ L + ++++P F +G S+QD A
Sbjct: 174 MTLRVNRRHGNAESYLEKLVAEGIAAKALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGA 233
Query: 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181
Q AA LL+ + G +LDAC+APGGKT H+LE+AD ++ ++D + RL + +N+ RL +
Sbjct: 234 QQAAYLLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQ 293
Query: 182 -ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A+ +D + +Y K FD ILAD+PCT SGV RRNPD+ W
Sbjct: 294 TASAACADARDLAA----------------WYDGKPFDAILADVPCTASGVARRNPDVKW 337
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR D K ++ +L+ LW+ LK GG++L TCS++ EE++ Q F H D+ +
Sbjct: 338 LRRPTDALKTARQQEALLDALWQTLKQGGRMLLATCSVFVEENDGQLQKFLNRHADAEPI 397
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQK 326
S LLP NK Q DGF+Y+L QK
Sbjct: 398 ESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|421553861|ref|ZP_15999813.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 98008]
gi|402334219|gb|EJU69511.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 98008]
Length = 419
Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 124/326 (38%), Positives = 185/326 (56%), Gaps = 27/326 (8%)
Query: 3 NAILREFLRKKGEIFKS-KMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
NA+LR FLR++ ++ S K ++ + N P+WW+ +K YP W NI PP
Sbjct: 118 NAVLRRFLRERDKLVASCKKDDV--AKHNLPLWWVAYLKNHYPK--HWHNIAAALQSHPP 173
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+TLR+N+R SY + L G+ + A+ L + ++++P F +G S+QD A
Sbjct: 174 MTLRVNRRHGNAESYLEKLVAEGIAAKALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGA 233
Query: 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181
Q AA LL+ + G +LDAC+APGGKT H+LE+AD ++ ++D + RL + +N+ RL +
Sbjct: 234 QQAAYLLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQ 293
Query: 182 -ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A+ +D + +Y K FD ILAD+PCT SGV RRNPD+ W
Sbjct: 294 TASAACADARDLAA----------------WYDGKPFDAILADVPCTASGVARRNPDVKW 337
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR D K ++ +L+ LW+ LK GG++L TCS++ EE++ Q F H D+ +
Sbjct: 338 LRRPTDALKTARQQEALLDALWQTLKQGGRMLLATCSVFVEENDGQLQKFLNRHADAEPI 397
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQK 326
S LLP NK Q DGF+Y+L QK
Sbjct: 398 ESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|420260316|ref|ZP_14762999.1| 16S rRNA methyltransferase B [Yersinia enterocolitica subsp.
enterocolitica WA-314]
gi|404512132|gb|EKA25984.1| 16S rRNA methyltransferase B [Yersinia enterocolitica subsp.
enterocolitica WA-314]
Length = 429
Score = 226 bits (577), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 122/336 (36%), Positives = 205/336 (61%), Gaps = 32/336 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + N +S++ +P W + ++K+ YP+ QW+ +LD ++KP
Sbjct: 117 LINGVLRQFQRQQVELLERAANN--DSHYLHPSWLLARIKLAYPD--QWQQVLDANNQKP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + I Y +LLK++ +E P A++L TP ++S +P F G+ ++QD
Sbjct: 173 PMWLRVNRLHHSRIEYLELLKQANIEALPHDFYPDAVRLITPCAVSDLPGFELGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LLD + G +LD C+APGGKT H+LE A + +++VD + RL+ + ENL+R
Sbjct: 233 ASAQGCVDLLDPQDGEQILDLCAAPGGKTTHILEAAPKVHVLAVDIDEQRLSRVKENLQR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L A + + D +T + + ++ FDRIL D PC+ +GV+RR+PD
Sbjct: 293 LRLHADVRVGD--------------GRTPDEW--CGDQQFDRILLDAPCSATGVIRRHPD 336
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI +L++ +I+ +W LK GG +++ TCS+ EE+++Q F + H ++
Sbjct: 337 IKWLRRDSDIAELAQLQSEIIEAIWPKLKKGGVMVYATCSILPEENQQQIATFLQRHSEA 396
Query: 298 I-----RLNSPG-QLLPTVNKKQDYDGFFYSLFQKR 327
+++PG Q LP +D DGF+Y+ KR
Sbjct: 397 DLVETGTVSAPGRQNLP---HPEDGDGFYYAKLIKR 429
>gi|441506695|ref|ZP_20988653.1| Ribosomal RNA small subunit methyltransferase B [Photobacterium sp.
AK15]
gi|441425636|gb|ELR63140.1| Ribosomal RNA small subunit methyltransferase B [Photobacterium sp.
AK15]
Length = 426
Score = 226 bits (577), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 120/336 (35%), Positives = 200/336 (59%), Gaps = 30/336 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR + R++ E ++ + + +P W + +K +YP Q++ I+D + K
Sbjct: 113 LLNAVLRNYQRQQ-EALDAQAQSHDAGRYGHPGWLLKLLKESYPQ--QFEAIVDANNTKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTII--GPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R T Y +LL ++G+ET I A++L P +SK+P F +G+ S+QD
Sbjct: 170 PMWLRVNRRHHTRDEYRELLNQAGIETDIHPEAQDALRLLAPCDVSKLPGFADGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQL+ L ++G +LD C+APGGKT H++E D +++++D + RL + ENL+R
Sbjct: 230 AAAQLSVEYLAPQAGELILDCCAAPGGKTAHIMERQPDTQVVAIDCDEQRLARVHENLQR 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
LNLKA ++ +D ++++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 290 LNLKAQVLCADARYPQ----------------QWWQGEQFDRILLDAPCSATGVIRRHPD 333
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI L+ +I++ +W+ LKPGG L++ TCS+ +E+ Q F D+
Sbjct: 334 IKWLRRADDIDALALLQTEIVDAMWQQLKPGGTLVYATCSITPQENCNQVKAFLTRTADA 393
Query: 298 IRLNS----PG-QLLPTVNKKQDYDGFFYSLFQKRK 328
+ S PG Q+LP + D DGF+Y++ +K +
Sbjct: 394 ELIGSDIEQPGRQILPG---EHDMDGFYYAVIRKAQ 426
>gi|313667408|ref|YP_004047692.1| SUN-family protein [Neisseria lactamica 020-06]
gi|313004870|emb|CBN86296.1| SUN-family protein [Neisseria lactamica 020-06]
Length = 419
Score = 226 bits (577), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 124/326 (38%), Positives = 185/326 (56%), Gaps = 27/326 (8%)
Query: 3 NAILREFLRKKGEIFKS-KMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
NA+LR FLR++ ++ S K ++ + N P+WW+ +K YP W NI PP
Sbjct: 118 NAVLRRFLRERDKLAASCKKDDV--AKHNLPLWWVAYLKNHYPK--HWHNIAAALQSHPP 173
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+TLR+N+R SY + L G+ + A+ L + ++++P F +G S+QD A
Sbjct: 174 MTLRVNRRHGNAESYLEKLVAEGIAAKALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGA 233
Query: 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181
Q AA LL+ + G +LDAC+APGGKT H+LE+AD ++ ++D + RL + +N+ RL +
Sbjct: 234 QQAAYLLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQ 293
Query: 182 -ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A+ +D + +Y K FD ILAD+PCT SGV RRNPD+ W
Sbjct: 294 TASAACADARDLAA----------------WYDGKPFDAILADVPCTASGVARRNPDVKW 337
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR D K ++ +L+ LW+ LK GG++L TCS++ EE++ Q F H D+ +
Sbjct: 338 LRRPTDALKTARQQEALLDALWQTLKQGGRMLLATCSVFVEENDGQLQKFLNRHADAEPI 397
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQK 326
S LLP NK Q DGF+Y+L QK
Sbjct: 398 ESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|416211456|ref|ZP_11621382.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis M01-240013]
gi|325145434|gb|EGC67710.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis M01-240013]
Length = 419
Score = 226 bits (577), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 124/326 (38%), Positives = 185/326 (56%), Gaps = 27/326 (8%)
Query: 3 NAILREFLRKKGEIFKS-KMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
NA+LR FLR++ ++ S K ++ + N P+WW+ +K YP W NI PP
Sbjct: 118 NAVLRRFLRERDKLAASCKKDDV--AKHNLPLWWVAYLKNHYPK--HWHNIAAALQSHPP 173
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+TLR+N+R SY + L G+ + A+ L + ++++P F +G S+QD A
Sbjct: 174 MTLRVNRRHGNAESYLEKLVAEGIAAKALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGA 233
Query: 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181
Q AA LL+ + G +LDAC+APGGKT H+LE+AD ++ ++D + RL + +N+ RL +
Sbjct: 234 QQAAYLLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQ 293
Query: 182 -ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A+ +D + +Y K FD ILAD+PCT SGV RRNPD+ W
Sbjct: 294 TASAACADARDLAA----------------WYDGKPFDAILADVPCTASGVARRNPDVKW 337
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR D K ++ +L+ LW+ LK GG++L TCS++ EE++ Q F H D+ +
Sbjct: 338 LRRPTDALKTARQQEALLDALWQTLKQGGRMLLATCSVFVEENDGQLQKFLNRHADAEPI 397
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQK 326
S LLP NK Q DGF+Y+L QK
Sbjct: 398 ESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|421566584|ref|ZP_16012327.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM3001]
gi|402345008|gb|EJU80135.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM3001]
Length = 419
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 124/326 (38%), Positives = 185/326 (56%), Gaps = 27/326 (8%)
Query: 3 NAILREFLRKKGEIFKS-KMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
NA+LR FLR++ ++ S K ++ + N P+WW+ +K YP W NI PP
Sbjct: 118 NAVLRRFLRERDKLAASCKKDDV--AKHNLPLWWVAYLKNHYPK--HWHNITAALQSHPP 173
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+TLR+N+R SY + L G+ + A+ L + ++++P F +G S+QD A
Sbjct: 174 MTLRVNRRHGNAESYLEKLVAEGIAAKALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGA 233
Query: 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181
Q AA LL+ + G +LDAC+APGGKT H+LE+AD ++ ++D + RL + +N+ RL +
Sbjct: 234 QQAAYLLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQ 293
Query: 182 -ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A+ +D + +Y K FD ILAD+PCT SGV RRNPD+ W
Sbjct: 294 TASAACADARDLAA----------------WYDGKPFDAILADVPCTASGVARRNPDVKW 337
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR D K ++ +L+ LW+ LK GG++L TCS++ EE++ Q F H D+ +
Sbjct: 338 LRRPTDALKTARQQEALLDALWQTLKQGGRMLLATCSVFVEENDGQLQKFLNRHADAEPI 397
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQK 326
S LLP NK Q DGF+Y+L QK
Sbjct: 398 ESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|329118891|ref|ZP_08247586.1| ribosomal RNA small subunit methyltransferase B [Neisseria
bacilliformis ATCC BAA-1200]
gi|327464919|gb|EGF11209.1| ribosomal RNA small subunit methyltransferase B [Neisseria
bacilliformis ATCC BAA-1200]
Length = 441
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 124/326 (38%), Positives = 184/326 (56%), Gaps = 25/326 (7%)
Query: 3 NAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPPL 62
NAILR FLR++ + S + Y N P WW++ ++ YP W NI+ PP+
Sbjct: 139 NAILRRFLRERDRLAASYKKDDVAKY-NLPRWWLDYLRNHYPK--HWNNIVTAFQLHPPM 195
Query: 63 TLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAAQ 122
TLR+N+R SY L +G+ + A+ L + + +P F +G S+QD AQ
Sbjct: 196 TLRVNRRHGNAESYLAELAAAGIAAKALDDCAVTLEAAVPVHSLPGFSDGLVSVQDFGAQ 255
Query: 123 LAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK- 181
AA +L R+G +LDAC+APGGKT H+LE AD + ++D + RL + +NL RL +
Sbjct: 256 QAAYILQPRNGERILDACAAPGGKTGHILETADCDITALDIDRGRLKRVEDNLARLGFQT 315
Query: 182 ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWL 241
A+ + +D + +Y + FD +LAD+PCT SGVVRRNPDI WL
Sbjct: 316 ASTVCADARDLAA----------------WYDGRPFDAVLADVPCTASGVVRRNPDIKWL 359
Query: 242 RRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLN 301
RR D K ++ +L+ LW ++KPGG++LF TCSL+ EE++ Q F + H D+
Sbjct: 360 RRPGDALKTARQQESLLDALWTVVKPGGRMLFATCSLFTEENDLQLQNFLRRHADAA-CA 418
Query: 302 SPGQLLPTVNKKQDYDGFFYSLFQKR 327
+P LLPT + DGF+Y+L +K+
Sbjct: 419 APQTLLPTPKQ----DGFYYALIRKQ 440
>gi|268687548|ref|ZP_06154410.1| 16S RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035]
gi|268627832|gb|EEZ60232.1| 16S RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035]
Length = 419
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 124/326 (38%), Positives = 184/326 (56%), Gaps = 27/326 (8%)
Query: 3 NAILREFLRKKGEIFKS-KMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
NA+LR FLR++ ++ S K ++ + N P+WW+ +K YP W NI PP
Sbjct: 118 NAVLRRFLREREKLAASCKKDDV--AKHNLPLWWVAYLKNHYPK--HWHNIAAALQSHPP 173
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+TLR+N+R SY + L G+ + A+ L + ++++P F G S+QD A
Sbjct: 174 MTLRVNRRHGNAESYLEKLVAEGIAAKALDEYAVTLEEAVPVNRLPGFAEGLVSVQDFGA 233
Query: 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181
Q AA LL+ + G +LDAC+APGGKT H+LE+AD ++ ++D + RL + +N+ RL +
Sbjct: 234 QQAAYLLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQ 293
Query: 182 -ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A+ +D + +Y K FD ILAD+PCT SGV RRNPD+ W
Sbjct: 294 TASAACADARDLAA----------------WYDGKPFDAILADVPCTASGVARRNPDVKW 337
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR D K ++ +L+ LW+ LK GG++L TCS++ EE++ Q F H D+ +
Sbjct: 338 LRRPTDALKTARQQEALLDALWQALKQGGRMLLATCSVFVEENDGQLQKFLNRHADAEPI 397
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQK 326
S LLP NK Q DGF+Y+L QK
Sbjct: 398 ESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|444377961|ref|ZP_21177167.1| Ribosomal RNA small subunit methyltransferase B [Enterovibrio sp.
AK16]
gi|443677953|gb|ELT84628.1| Ribosomal RNA small subunit methyltransferase B [Enterovibrio sp.
AK16]
Length = 425
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 118/334 (35%), Positives = 192/334 (57%), Gaps = 30/334 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R + E + + +P W + ++ YP+ +W+ +++ H+K
Sbjct: 113 LINAVLRNYQRNQ-EALDTAAVAHDAGKYGHPGWLLKLLQKAYPS--EWEQVVEANHEKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTI--IGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T +Y LL ++G+ET I A+KL TP ++ +P F G+ S+QD
Sbjct: 170 PMWLRVNRTHHTRDAYKALLDEAGIETAIHPEAEDALKLATPCDVTALPGFSEGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
AAAQL+ L ++G +LD C+APGGKTCH+LE K++++D + +RL + ENLKR
Sbjct: 230 AAAQLSVDYLKPQAGELILDCCAAPGGKTCHILEHEPTAKVVAMDVDATRLTRVEENLKR 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L A +I D +++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 290 LKLDAQVICGD----------------ARTPGEWWQGEQFDRILLDAPCSATGVIRRHPD 333
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIF-SKNHKD 296
I WLRR +DI +L +IL+ +W LK GG L++ TCS+ +E+ EQ F ++
Sbjct: 334 IKWLRRADDIDQLVSLQSEILDAMWAQLKSGGTLVYATCSVTPQENAEQVKAFLARTSGA 393
Query: 297 SIRLNSPG----QLLPTVNKKQDYDGFFYSLFQK 326
++ SP Q+LP +++ DGF+Y++ +K
Sbjct: 394 TLETGSPEQPGRQILP---GQENMDGFYYAVLKK 424
>gi|225075469|ref|ZP_03718668.1| hypothetical protein NEIFLAOT_00474 [Neisseria flavescens
NRL30031/H210]
gi|224953188|gb|EEG34397.1| hypothetical protein NEIFLAOT_00474 [Neisseria flavescens
NRL30031/H210]
Length = 419
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 125/327 (38%), Positives = 184/327 (56%), Gaps = 27/327 (8%)
Query: 3 NAILREFLRKKGEIFKS-KMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
NAILR FLR++ ++ S K ++ + N P+WW+ ++ YP W NI PP
Sbjct: 118 NAILRRFLRERDKLAASCKKDDV--AKHNLPVWWVAYLRNHYPK--HWHNITTALQSHPP 173
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+TLR+N+R SY + L G+ + A+ L + +S++P F +G S+QD A
Sbjct: 174 MTLRVNRRHGNAESYLEKLAAEGIPARALDEYAVMLEEAMPVSRLPGFSDGLVSVQDFGA 233
Query: 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL- 180
Q AA LL+ + G +LDAC+APGGKT H+LE+AD + ++D + RLN + NL RL
Sbjct: 234 QRAAYLLNPKDGERILDACAAPGGKTGHILELADCHVTALDIDEGRLNRVKSNLDRLGFQ 293
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
KA+L +D + +Y K FD +LAD+PCT SGV RRNPD+ W
Sbjct: 294 KASLACADAQDLTA----------------WYDGKAFDAVLADVPCTASGVARRNPDVKW 337
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR D K ++ +L+ LW+ L G++L TCS++ EE++ Q F H D+ +
Sbjct: 338 LRRPTDAVKTARQQEALLDALWQTLTKNGRMLLATCSVFVEENDGQLQKFLNRHADAELI 397
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQKR 327
S LLP NK Q DGF+Y+L +K+
Sbjct: 398 ES-HVLLP--NKHQ--DGFYYALIKKQ 419
>gi|124265465|ref|YP_001019469.1| Sun protein [Methylibium petroleiphilum PM1]
gi|124258240|gb|ABM93234.1| Sun protein [Methylibium petroleiphilum PM1]
Length = 449
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 127/345 (36%), Positives = 196/345 (56%), Gaps = 37/345 (10%)
Query: 2 INAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
+NA+LR LR++ + + + WN+P WWI ++ +P QW +L ++ P
Sbjct: 123 VNAVLRRHLREQATQAAAAAKD-PVAVWNHPRWWIETLQRDWPG--QWAELLRANDRRAP 179
Query: 62 LTLRINQRKTTLISYNKLLKKSGLET------TIIGPLAIKLHTPISISKIPKFFNGFCS 115
+TLR+NQR+ SY L+++G+ I AI+L TP ++S +P F +G S
Sbjct: 180 MTLRVNQRQQDRASYLLRLEQAGIAAHAVTRPGAIDAQAIELATPCAVSALPGFADGAVS 239
Query: 116 IQDAAAQLAAPLL---DIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMIS 172
+QD AAQ+AAPLL + G VLDAC+APGGKT HLLE+A++ L+++D + RL +S
Sbjct: 240 VQDLAAQVAAPLLLGAGLAPGARVLDACAAPGGKTAHLLELAELDLLALDADPRRLVKVS 299
Query: 173 ENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVV 232
E L+RL L+A +D + ++ + +D IL D PC+ SG+V
Sbjct: 300 ETLQRLGLRARTQAADARDV----------------VAWWDGRPYDAILLDAPCSASGIV 343
Query: 233 RRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSK 292
RR+PD+ WLRR +D+ L+ ++L+ LW +L+PGG+LL+ TCS++ E Q F +
Sbjct: 344 RRHPDVRWLRRASDLDALASTQAELLDALWPLLRPGGRLLYATCSVFKAEGAHQIDAFLQ 403
Query: 293 NHKDSIRLNSPGQLLPTVNK---------KQDYDGFFYSLFQKRK 328
D+I SPG LLP V+ + DGF+Y+L +KR
Sbjct: 404 RAPDAIAQPSPGYLLPVVDNPGQVSEGPLRPSTDGFYYALLEKRS 448
>gi|59802189|ref|YP_208901.1| 16S RNA methyltransferase [Neisseria gonorrhoeae FA 1090]
gi|59719084|gb|AAW90489.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae FA 1090]
Length = 419
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 124/326 (38%), Positives = 184/326 (56%), Gaps = 27/326 (8%)
Query: 3 NAILREFLRKKGEIFKS-KMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
NA+LR FLR++ ++ S K ++ + N P+WW+ +K YP W NI PP
Sbjct: 118 NAVLRRFLREREKLAASCKKDDV--AKHNLPLWWVAYLKNHYPK--HWHNIAAALQSHPP 173
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+TLR+N+R SY + L G+ + A+ L + ++++P F G S+QD A
Sbjct: 174 MTLRVNRRHGNAESYLEKLVAEGIAAKALDEYAVTLEEAVPVNRLPGFAEGLVSVQDFGA 233
Query: 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181
Q AA LL+ + G +LDAC+APGGKT H+LE+AD ++ ++D + RL + +N+ RL +
Sbjct: 234 QQAAYLLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQ 293
Query: 182 -ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A+ +D + +Y K FD ILAD+PCT SGV RRNPD+ W
Sbjct: 294 TASAACADARDLAA----------------WYDGKPFDAILADVPCTASGVARRNPDVKW 337
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR D K ++ +L+ LW+ LK GG++L TCS++ EE++ Q F H D+ +
Sbjct: 338 LRRPTDALKTARQQEALLDALWQALKQGGRMLLATCSVFVEENDGQLQKFLNRHADAEPI 397
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQK 326
S LLP NK Q DGF+Y+L QK
Sbjct: 398 ESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|268597816|ref|ZP_06131983.1| 16S RNA methyltransferase [Neisseria gonorrhoeae FA19]
gi|268683121|ref|ZP_06149983.1| 16S RNA methyltransferase [Neisseria gonorrhoeae PID332]
gi|385336805|ref|YP_005890752.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae
TCDC-NG08107]
gi|268551604|gb|EEZ46623.1| 16S RNA methyltransferase [Neisseria gonorrhoeae FA19]
gi|268623405|gb|EEZ55805.1| 16S RNA methyltransferase [Neisseria gonorrhoeae PID332]
gi|317165348|gb|ADV08889.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 419
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 124/326 (38%), Positives = 184/326 (56%), Gaps = 27/326 (8%)
Query: 3 NAILREFLRKKGEIFKS-KMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
NA+LR FLR++ ++ S K ++ + N P+WW+ +K YP W NI PP
Sbjct: 118 NAVLRRFLREREKLAASCKKDDV--AKHNLPLWWVAYLKNHYPK--HWHNIAAALQSHPP 173
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+TLR+N+R SY + L G+ + A+ L + ++++P F G S+QD A
Sbjct: 174 MTLRVNRRHGNAESYLEKLVAEGIAAKALDEYAVTLEEAVPVNRLPGFAEGLVSVQDFGA 233
Query: 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181
Q AA LL+ + G +LDAC+APGGKT H+LE+AD ++ ++D + RL + +N+ RL +
Sbjct: 234 QQAAYLLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQ 293
Query: 182 -ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A+ +D + +Y K FD ILAD+PCT SGV RRNPD+ W
Sbjct: 294 TASAACADARDLAA----------------WYDGKPFDAILADVPCTASGVARRNPDVKW 337
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR D K ++ +L+ LW+ LK GG++L TCS++ EE++ Q F H D+ +
Sbjct: 338 LRRPTDALKTARRQEALLDALWQALKQGGRMLLATCSVFVEENDGQLQKFLNRHADAEPI 397
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQK 326
S LLP NK Q DGF+Y+L QK
Sbjct: 398 ESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|381401490|ref|ZP_09926390.1| 16S rRNA methyltransferase B [Kingella kingae PYKK081]
gi|380833517|gb|EIC13385.1| 16S rRNA methyltransferase B [Kingella kingae PYKK081]
Length = 418
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 126/325 (38%), Positives = 191/325 (58%), Gaps = 24/325 (7%)
Query: 3 NAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPPL 62
NAILR F R++ + KS +N + + +N P W + ++ YP W N++ PPL
Sbjct: 118 NAILRRFQREQEGLNKSCQFN-NIAKFNLPTWLQSSLQTQYPK--HWHNMVTAFQSHPPL 174
Query: 63 TLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAAQ 122
TLR+N+R +Y LL+++G+ + AI++ TP+ ++++P+F +G S+QD AQ
Sbjct: 175 TLRVNRRHMNADAYLLLLEQAGIAAKKLDDYAIRITTPVPVNQLPQFADGAVSVQDWGAQ 234
Query: 123 LAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKA 182
AA LL+ ++G VLDAC+APGGKT HLLE+A+ + ++D + RL + +NL RL L+A
Sbjct: 235 QAAYLLNPQNGERVLDACAAPGGKTGHLLELANCSVTALDIDKKRLARVQDNLARLKLQA 294
Query: 183 TLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLR 242
L S N ++ FD ILAD+PCT SG ++RNPDI WLR
Sbjct: 295 VLHCS----------------PAQNLAEWWDGVPFDAILADVPCTASGTIKRNPDIKWLR 338
Query: 243 RKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS 302
R ND K ++ +L+ LWK LK GG++L TCS++ E++ Q F + H D+ L
Sbjct: 339 RPNDALKTAQQQEIMLDELWKTLKQGGRMLLATCSIFEAENQLQCQKFLRRHADATLLEE 398
Query: 303 PGQLLPTVNKKQDYDGFFYSLFQKR 327
L+P N+KQ DGF+Y+L K+
Sbjct: 399 K-VLIP--NEKQ--DGFYYALIHKK 418
>gi|297180807|gb|ADI17013.1| tRNA and rRNA cytosine-c5-methylases [uncultured Vibrionales
bacterium HF0010_22E23]
Length = 426
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 120/335 (35%), Positives = 192/335 (57%), Gaps = 30/335 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR + R++ + K + + +P W + ++ YP+ W+ I+D H+K
Sbjct: 113 LVNAVLRNYQREQ-DALNEKAISHDAGRYGHPGWLLKLLQNAYPD--SWQQIVDSNHQKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTII--GPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ Y +LL G+E AIKL +P ++K+P F G+ S+QD
Sbjct: 170 PMWLRVNRTHHNRDEYLELLNAEGIEGEAHPEAEDAIKLGSPCDVTKLPGFEKGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQL+ L ++G +LD C+APGGKTCH+LE + K++++D + +RL + ENL R
Sbjct: 230 AAAQLSVNYLQPKAGELILDCCAAPGGKTCHILEHQPNAKVVAIDADANRLTRVEENLGR 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
LNL A +I D + ++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 290 LNLNADVICGDARSPD----------------EWWNGEDFDRILLDAPCSATGVIRRHPD 333
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI++L +I + +W+ LK GG L++ TCS+ +E+ EQ F H D+
Sbjct: 334 IKWLRRADDIEQLVTLQAEIFDAMWQKLKRGGTLVYATCSVTPQENAEQVKAFLARHDDA 393
Query: 298 ----IRLNSPG-QLLPTVNKKQDYDGFFYSLFQKR 327
++PG Q+LP + D DGF+Y++ QK+
Sbjct: 394 NLQTGDADNPGRQILPG---QDDMDGFYYAVLQKQ 425
>gi|350572384|ref|ZP_08940684.1| ribosomal RNA small subunit methyltransferase B [Neisseria
wadsworthii 9715]
gi|349790168|gb|EGZ44087.1| ribosomal RNA small subunit methyltransferase B [Neisseria
wadsworthii 9715]
Length = 420
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 130/325 (40%), Positives = 187/325 (57%), Gaps = 22/325 (6%)
Query: 3 NAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPPL 62
NAILR FLR+K ++ NI Y N+P WW+ ++ YP + W NIL PPL
Sbjct: 118 NAILRRFLREKDKLNAQCKSNIVAKY-NHPEWWVKYLQNHYPKY--WNNILTASQSHPPL 174
Query: 63 TLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAAQ 122
TLRIN R+ SY L+++G+E ++ A+KL + +++IP F G SIQD AQ
Sbjct: 175 TLRINCRRGNAESYLNELQEAGIEAKLLDIHAVKLTEALPVNQIPGFSEGRVSIQDYGAQ 234
Query: 123 LAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKA 182
AA +L ++G +LDAC+APGGKT H+LE+AD L ++D + +RL + NL RL +
Sbjct: 235 QAALILKPQNGERILDACAAPGGKTGHILELADCHLTALDIDETRLARVRNNLDRLGFQT 294
Query: 183 TLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLR 242
+++ + +Y + FD ILAD+PCT SGVV+RNPDI WLR
Sbjct: 295 GIVIR--------------CADAQDTASWYDGQIFDAILADVPCTASGVVKRNPDIKWLR 340
Query: 243 RKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS 302
R D K ++ +L+ LW +LKPGG++L TCS++ EE+ Q F H D+ +
Sbjct: 341 RPTDAFKTARQQETLLDTLWDLLKPGGRMLLATCSIFEEENSSQLQKFLNRHADA-QCKE 399
Query: 303 PGQLLPTVNKKQDYDGFFYSLFQKR 327
LLP N+ DGF+Y+L QK+
Sbjct: 400 THVLLPNNNQ----DGFYYALIQKQ 420
>gi|419838520|ref|ZP_14361945.1| ribosomal RNA small subunit methyltransferase B [Haemophilus
haemolyticus HK386]
gi|386910285|gb|EIJ74942.1| ribosomal RNA small subunit methyltransferase B [Haemophilus
haemolyticus HK386]
Length = 450
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 130/339 (38%), Positives = 198/339 (58%), Gaps = 35/339 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
++NA+LR FLR++ EI I + W +P W++N++K YPN W+ I++ ++
Sbjct: 132 LVNAVLRRFLREQDEILA-----IIDKNWQTLHPEWFVNKLKKAYPN---WREIIEANNQ 183
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLET-TIIGPLAIKLHTPISISKIPKFFNGFCSIQ 117
KPP+ LR+N +K L +Y L++ G+ T P A+ L PI++ K+P F G ++Q
Sbjct: 184 KPPMWLRVNSQKNALETYRTFLEEHGVSAKTSHHPNALCLDIPIAVQKLPHFEEGAVTVQ 243
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
D +AQ AA LL+ ++ ++LDAC+APGGKT H+LE+A +I++D RL + ENL+
Sbjct: 244 DLSAQWAATLLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLE 303
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RLN +A ++ D S+ + + +I K FDRIL D PC+ +GV+RR+P
Sbjct: 304 RLNQQAIVVCGDASQPD--EWLAEIGKSAVK---------FDRILLDAPCSATGVIRRHP 352
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR++ DI +L + KIL+ LW+ LKP G LL+ TCS+ EE+ EQ F H D
Sbjct: 353 DIKWLRKETDIAQLVELQKKILSALWEKLKPNGVLLYATCSVLPEENCEQIQAFLNAHAD 412
Query: 297 SIRLNSP---------GQLLPTVNKKQDYDGFFYSLFQK 326
+ L P Q +P N DGF+Y+ +K
Sbjct: 413 AELLLLPFSDDKSAVGFQFIPQPNGG---DGFYYAKLRK 448
>gi|120613161|ref|YP_972839.1| sun protein [Acidovorax citrulli AAC00-1]
gi|120591625|gb|ABM35065.1| sun protein [Acidovorax citrulli AAC00-1]
Length = 461
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 119/343 (34%), Positives = 192/343 (55%), Gaps = 32/343 (9%)
Query: 2 INAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
+NA LR FLR++ + + + + WN+P WWI +++ +P W+ IL + + P
Sbjct: 132 VNACLRRFLRERDALVAATDSD-PVARWNHPAWWIERLRKDHPG--HWEQILRANNAQAP 188
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+ LRI++ K + Y L+ G++ + L +P + ++P F +G S+QD AA
Sbjct: 189 MALRIHRGKVDMAGYLAALEAVGMKAWPATDTGLVLESPQPVQRLPGFADGRVSVQDLAA 248
Query: 122 QLAAPLL----DIRSGMYVLDACSAPGGKTCHLLEIAD----IKLISVDNNLSRLNMISE 173
Q AAPLL D+ + VLDAC+APGGKT HLLE A + + +++ + R I E
Sbjct: 249 QQAAPLLLSGLDLGRPLRVLDACAAPGGKTAHLLEYAGAGSPVHVTALEIDPLRSARIGE 308
Query: 174 NLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVR 233
L+RL L+A ++++D + D ++ + FD IL D PCT SG+VR
Sbjct: 309 TLQRLGLRAQVLVADAGRPE------DWWQQACG------GEPFDAILLDAPCTASGIVR 356
Query: 234 RNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKN 293
R+PD+ WLRR DI +L+ ++L+ LW +L+PGG++L+ TCS++ E ++ F N
Sbjct: 357 RHPDVRWLRRPGDIAQLAAQQARLLSTLWPLLRPGGRMLYCTCSVFRAEGDDMVRSFLAN 416
Query: 294 HKDSIRLNSPGQLLP---------TVNKKQDYDGFFYSLFQKR 327
+ D+ L SPG LLP N +++DGFFY+L ++
Sbjct: 417 NNDAHLLPSPGHLLPRDPGDGGSVRENPSREHDGFFYALLGRQ 459
>gi|28899818|ref|NP_799423.1| Sun protein [Vibrio parahaemolyticus RIMD 2210633]
gi|260362016|ref|ZP_05775021.1| ribosomal RNA small subunit methyltransferase B [Vibrio
parahaemolyticus K5030]
gi|260876497|ref|ZP_05888852.1| ribosomal RNA small subunit methyltransferase B [Vibrio
parahaemolyticus AN-5034]
gi|260897446|ref|ZP_05905942.1| ribosomal RNA small subunit methyltransferase B [Vibrio
parahaemolyticus Peru-466]
gi|46396865|sp|Q87KD3.1|RSMB_VIBPA RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|28808070|dbj|BAC61307.1| Sun protein [Vibrio parahaemolyticus RIMD 2210633]
gi|308087890|gb|EFO37585.1| ribosomal RNA small subunit methyltransferase B [Vibrio
parahaemolyticus Peru-466]
gi|308090396|gb|EFO40091.1| ribosomal RNA small subunit methyltransferase B [Vibrio
parahaemolyticus AN-5034]
gi|308114191|gb|EFO51731.1| ribosomal RNA small subunit methyltransferase B [Vibrio
parahaemolyticus K5030]
Length = 427
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 122/336 (36%), Positives = 196/336 (58%), Gaps = 30/336 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R + E+ + + N + + +P W + ++ YP QW++I+D ++K
Sbjct: 113 LINAVLRNYQRNQEELDQMAVSN-NAGKYGHPSWLLKLLQDAYPQ--QWESIVDANNQKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + T Y LLK +++T AIKL P + K+P F G+ S+QD
Sbjct: 170 PMWLRVNHQHHTRDEYLALLKNENIDSTPHTEAMDAIKLAAPCDVMKLPGFDKGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQL+ L + G +LD C+APGGKT H+LE + +++++D + +RL + ENLKR
Sbjct: 230 AAAQLSINYLKPQDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKR 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
LNL+A ++ D N +++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 290 LNLQAKVVCGD----------------ARNPQEWWQGEQFDRILLDAPCSATGVIRRHPD 333
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI L++ +I + +W LKPGG +++ TCS+ +E+ EQ F D+
Sbjct: 334 IKWLRRADDIAALAELQSEIFDAMWTQLKPGGTMVYATCSITPQENVEQVKAFLARTADA 393
Query: 298 IRLNS----PG-QLLPTVNKKQDYDGFFYSLFQKRK 328
L+S PG Q+LP ++D DGF+Y++ K +
Sbjct: 394 QLLDSDPDQPGRQILPG---EEDMDGFYYAVLTKTR 426
>gi|91226301|ref|ZP_01261141.1| Sun protein [Vibrio alginolyticus 12G01]
gi|91189312|gb|EAS75591.1| Sun protein [Vibrio alginolyticus 12G01]
Length = 427
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 123/334 (36%), Positives = 194/334 (58%), Gaps = 30/334 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R + E+ + + N Y +P W + ++ YP QW++I+D ++K
Sbjct: 113 LINAVLRNYQRNQEELDQMAVSNNAGKY-GHPSWLLKLLQEAYPQ--QWESIVDANNQKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + T Y LLK +++T AIKL P + K+P F G+ S+QD
Sbjct: 170 PMWLRVNHQHHTRDEYLALLKNENIDSTPHTEAMDAIKLAAPCDVMKLPGFEKGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQL+ L + G +LD C+APGGKT H+LE + +++++D + +RL + ENLKR
Sbjct: 230 AAAQLSINYLKPQDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKR 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
LNL+A ++ D N +++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 290 LNLQAKVVCGD----------------ARNPQEWWQGEQFDRILLDAPCSATGVIRRHPD 333
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI L++ +I + +W LKPGG +++ TCS+ +E+ EQ F D+
Sbjct: 334 IKWLRRADDIAALAELQSEIFDAMWTQLKPGGTMVYATCSITPQENVEQVKAFLARTADA 393
Query: 298 IRLNS----PG-QLLPTVNKKQDYDGFFYSLFQK 326
L+S PG Q+LP ++D DGF+Y++ K
Sbjct: 394 QLLDSDPDQPGRQILPG---EEDMDGFYYAVLTK 424
>gi|241760436|ref|ZP_04758530.1| ribosomal RNA small subunit methyltransferase B [Neisseria
flavescens SK114]
gi|241319105|gb|EER55598.1| ribosomal RNA small subunit methyltransferase B [Neisseria
flavescens SK114]
Length = 417
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 124/327 (37%), Positives = 184/327 (56%), Gaps = 27/327 (8%)
Query: 3 NAILREFLRKKGEIFKS-KMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
NAILR FLR++ ++ S K ++ + N P+WW+ ++ YP W NI PP
Sbjct: 116 NAILRRFLRERDKLAASCKKDDV--AKHNLPLWWVAYLRNHYPK--HWHNITTALQSHPP 171
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+TLR+N+R SY + L G+ + A+ L + +S++P F +G S+QD A
Sbjct: 172 MTLRVNRRHGNAESYLEKLAAEGIPARALDEYAVMLEEAVPVSRLPGFSDGLVSVQDFGA 231
Query: 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181
Q AA LL+ + G +LDAC+APGGKT H+LE+AD + ++D + RLN + NL RL +
Sbjct: 232 QRAAYLLNPKDGERILDACAAPGGKTGHILELADCHVTALDIDEGRLNRVKSNLDRLGFQ 291
Query: 182 -ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A+L +D + +Y K FD +LAD+PCT SGV RRNPD+ W
Sbjct: 292 TASLTCADAQDLTA----------------WYDGKAFDAVLADVPCTASGVARRNPDVKW 335
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR D K ++ +L+ LW+ L G++L TCS++ EE++ Q F H D+ +
Sbjct: 336 LRRPTDAVKTARQQEALLDALWQTLTKNGRMLLATCSVFVEENDGQLQKFLNRHADAELI 395
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQKR 327
S LLP NK Q DGF+Y+L +K+
Sbjct: 396 ESR-VLLP--NKHQ--DGFYYALIKKQ 417
>gi|319639525|ref|ZP_07994272.1| SUN protein [Neisseria mucosa C102]
gi|317399096|gb|EFV79770.1| SUN protein [Neisseria mucosa C102]
Length = 417
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 125/327 (38%), Positives = 184/327 (56%), Gaps = 27/327 (8%)
Query: 3 NAILREFLRKKGEIFKS-KMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
NAILR FLR++ ++ S K ++ + N P+WW+ +K YP W NI PP
Sbjct: 116 NAILRRFLRERDKLAASCKKDDV--AKHNLPLWWVAYLKNRYPK--HWHNITTALQSHPP 171
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+TLR+N+R SY + L G+ + A+ L + +S++P F +G S+QD A
Sbjct: 172 MTLRVNRRHGNAESYLEKLAAEGILARALDEYAVMLEEAVPVSRLPGFSDGLVSVQDFGA 231
Query: 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181
Q AA LL+ + G +LDAC+APGGKT H+LE+AD + ++D + RLN + NL RL +
Sbjct: 232 QRAAYLLNPKDGERILDACAAPGGKTGHILELADCHVTALDIDEGRLNRVKSNLDRLGFQ 291
Query: 182 -ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A+L +D + +Y K FD +LAD+PCT SGV RRNPD+ W
Sbjct: 292 TASLACADAQDLAA----------------WYDGKAFDAVLADVPCTASGVARRNPDVKW 335
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR D K ++ +L+ LW+ L G++L TCS++ EE++ Q F H D+ +
Sbjct: 336 LRRPTDAVKTARQQEALLDALWQTLTKNGRMLLATCSVFVEENDGQLQKFLNRHADAELI 395
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQKR 327
S LLP NK Q DGF+Y+L +K+
Sbjct: 396 ES-HVLLP--NKHQ--DGFYYALIKKQ 417
>gi|299531357|ref|ZP_07044767.1| sun, tRNA and rRNA cytosine-C5-methylase [Comamonas testosteroni
S44]
gi|298720764|gb|EFI61711.1| sun, tRNA and rRNA cytosine-C5-methylase [Comamonas testosteroni
S44]
Length = 461
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 124/343 (36%), Positives = 195/343 (56%), Gaps = 33/343 (9%)
Query: 2 INAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
INA LR FLR++ + S N + WN+P WWI ++K +P W+ IL + +PP
Sbjct: 132 INACLRRFLRER-DALVSATDNDPVAVWNHPAWWIARLKKDHPQ--DWQTILAANNAQPP 188
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+TLR+N +K+T Y L+ L++T + ++L + + ++P+F G+ S+QD AA
Sbjct: 189 MTLRVNAQKSTPAQYQNALQAMNLKSTAVAECGLQLEQAVPVQELPQFEEGWASVQDGAA 248
Query: 122 QLAAPLLDIRSG------MYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMIS 172
Q AAPLL + VLDAC+APGGKT HLLE A I++ +++ + R I
Sbjct: 249 QAAAPLLLAGLPEPQGRPLRVLDACAAPGGKTAHLLERAAPGGIEVTALEIDPERARRIG 308
Query: 173 ENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVV 232
E L RL LKA ++++D S + + + ++FD IL D PCT SG+V
Sbjct: 309 ETLSRLGLKAKVLVADASA---PQAWFESQ---------CGGQFFDAILLDAPCTASGIV 356
Query: 233 RRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSK 292
RR PD+ WLRR++D+ +L+ ++L+ LW +L+PGG++++ TCS++ E + Q F
Sbjct: 357 RRQPDVRWLRRESDVAQLADIQSRLLDTLWPLLQPGGRMVYCTCSVFKAEGDAQMQAFLA 416
Query: 293 NHKDSIRLNSPGQLLPTVNKKQ---------DYDGFFYSLFQK 326
+ + L +PG L+P K D+DGFFY+L +K
Sbjct: 417 RNTTAASLPAPGHLIPGKAAKHDSVADNPLGDHDGFFYALLEK 459
>gi|269967001|ref|ZP_06181071.1| sun protein [Vibrio alginolyticus 40B]
gi|269828395|gb|EEZ82659.1| sun protein [Vibrio alginolyticus 40B]
Length = 427
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 122/334 (36%), Positives = 195/334 (58%), Gaps = 30/334 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R + E+ + + N + + +P W + ++ YP QW++I+D ++K
Sbjct: 113 LINAVLRNYQRNQEELDQMAVSN-NAGKYGHPSWLLKLLQEAYPQ--QWESIVDANNQKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + T Y LLK +++T AIKL P + K+P F G+ S+QD
Sbjct: 170 PMWLRVNHQHHTRDEYLALLKNENIDSTPHTEAMDAIKLAAPCDVMKLPGFDKGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQL+ L + G +LD C+APGGKT H+LE + +++++D + +RL + ENLKR
Sbjct: 230 AAAQLSINYLKPQDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKR 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
LNL+A ++ D N +++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 290 LNLQAKVVCGD----------------ARNPQEWWQGEQFDRILLDAPCSATGVIRRHPD 333
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI L++ +I + +W LKPGG +++ TCS+ +E+ EQ F D+
Sbjct: 334 IKWLRRADDIAALAELQSEIFDAMWTQLKPGGTMVYATCSITPQENVEQVKAFLARTADA 393
Query: 298 IRLNS----PG-QLLPTVNKKQDYDGFFYSLFQK 326
L+S PG Q+LP ++D DGF+Y++ K
Sbjct: 394 QLLDSDPDQPGRQILPG---EEDMDGFYYAVLTK 424
>gi|171060673|ref|YP_001793022.1| sun protein [Leptothrix cholodnii SP-6]
gi|170778118|gb|ACB36257.1| sun protein [Leptothrix cholodnii SP-6]
Length = 453
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 121/339 (35%), Positives = 188/339 (55%), Gaps = 32/339 (9%)
Query: 2 INAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
+NA+LR FLR++ + +P WWI+Q++ +P QW+ +L ++ P
Sbjct: 131 VNAVLRRFLRERDALVPRWEAADPVVRHQHPRWWIDQLQRDWPK--QWQALLGAANQHAP 188
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+ LR+N R+T Y L G+E ++ A+ LH P + +P F G S+QD +A
Sbjct: 189 MALRVNARQTDAAGYRAELAAIGIEAQVVSSHALVLHKPAPVQALPGFERGRVSVQDLSA 248
Query: 122 QLAAPLL------DIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENL 175
Q+AAPLL + G VLDAC+APGGKT HLLE+A++ L+++D + +RL + + L
Sbjct: 249 QVAAPLLIGSGPDRLAPGARVLDACAAPGGKTAHLLELAELDLLALDVDATRLARVEQTL 308
Query: 176 KRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRN 235
+R+ L+A L ++D + + R++ + FD IL D PC+ SG+VRR+
Sbjct: 309 QRVGLRAALAVADAGEPS----------------RWWDGQPFDAILLDAPCSASGIVRRH 352
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PD+ WLRR +DIK L+ ++L+ LW +LKPGG+L++ TCS++ E Q F +
Sbjct: 353 PDVRWLRRASDIKALAATQSRLLDALWGLLKPGGRLVYATCSVFRAEGSGQVAAFLQRTP 412
Query: 296 DSIRLNSPGQLLPTVNKKQDY--------DGFFYSLFQK 326
+I SPG LL V+ DGFFY+ K
Sbjct: 413 GAIARPSPGHLLGVVDNPAQAGEVASVAGDGFFYARLDK 451
>gi|288941789|ref|YP_003444029.1| sun protein [Allochromatium vinosum DSM 180]
gi|288897161|gb|ADC62997.1| sun protein [Allochromatium vinosum DSM 180]
Length = 449
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 123/340 (36%), Positives = 190/340 (55%), Gaps = 36/340 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR F R+ E + + ES W +P W + +++ +P+ W++I+ +++
Sbjct: 129 LVNALLRRFQREH-EALLAWVDTQPESRWLFPDWLLERLRADWPD--DWESIVLASNERA 185
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + T L+ +G+ I L ++L P + +P F G S+QD
Sbjct: 186 PMALRVNPLQGTRADTLAELESAGIGACAIDGLDTGVRLDQPRATRDLPGFIEGRVSVQD 245
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
+ AQLAA LLD + G VLDAC+APGGKT +LE A + L+++D++ +RL + L
Sbjct: 246 SGAQLAARLLDAQPGERVLDACAAPGGKTAAILERAGNALDLVAIDSDAARLATVGTTLD 305
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL LKA + + D + + + + FDRIL D+PC+ +GV+RR+P
Sbjct: 306 RLGLKAQVRVGDAADPHGD----------------WTARPFDRILLDVPCSATGVIRRHP 349
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLRR +DI L+ +IL+ +W +L+PGG+LL+ TCSL EE+E Q F D
Sbjct: 350 DIKWLRRPDDIAALAATQSRILDAIWPLLRPGGRLLYATCSLLAEENERQVDAFLARRTD 409
Query: 297 SIRLN---------SPG-QLLPTVNKKQDYDGFFYSLFQK 326
+ L+ PG QLLPT Q +DGFFY+L K
Sbjct: 410 ARALDLPTDWGRPRPPGRQLLPTT---QGHDGFFYALLAK 446
>gi|221069396|ref|ZP_03545501.1| sun protein [Comamonas testosteroni KF-1]
gi|220714419|gb|EED69787.1| sun protein [Comamonas testosteroni KF-1]
Length = 461
Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 125/344 (36%), Positives = 193/344 (56%), Gaps = 35/344 (10%)
Query: 2 INAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
INA LR FLR++ + S N + WN+P WWI ++K +P W+ IL + +PP
Sbjct: 132 INACLRRFLRER-DALVSATDNDPVAVWNHPAWWIARLKKDHPQ--DWQTILAANNAQPP 188
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+TLR+N +K+T Y L+ GL+ T + ++L + + ++P F G+ S+QDAAA
Sbjct: 189 MTLRVNAQKSTAAQYQDALQAMGLKATAVAECGLQLEQAVPVQELPHFDEGWTSVQDAAA 248
Query: 122 QLAA-------PLLDIRSGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMI 171
Q AA P R + VLDAC+APGGKT HL+E A I++ +++ + R I
Sbjct: 249 QAAAPLLLAGLPQPQGRP-LRVLDACAAPGGKTAHLIERAVPGSIEVTALEIDPERARRI 307
Query: 172 SENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGV 231
E L RL LKA ++++D S K + + + FD IL D PCT SG+
Sbjct: 308 DETLSRLGLKAKVLVADASA---PKDWFESQ---------CGAQPFDAILLDAPCTASGI 355
Query: 232 VRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFS 291
VRR PD+ WLRR++D+ +L+ ++L+ LW +L+PGG++++ TCS++ E + Q F
Sbjct: 356 VRRQPDVRWLRRESDVAQLADIQSRLLDTLWPLLQPGGRMVYCTCSVFKAEGDAQMQAFL 415
Query: 292 KNHKDSIRLNSPGQLLPTVNKKQ---------DYDGFFYSLFQK 326
+ + L +PG L+P K D+DGFFY+L +K
Sbjct: 416 ARNTTAASLPAPGHLIPGKAAKHDSVSDNPLGDHDGFFYALLEK 459
>gi|387769752|ref|ZP_10125952.1| ribosomal RNA small subunit methyltransferase B [Pasteurella
bettyae CCUG 2042]
gi|386906141|gb|EIJ70885.1| ribosomal RNA small subunit methyltransferase B [Pasteurella
bettyae CCUG 2042]
Length = 475
Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 130/346 (37%), Positives = 202/346 (58%), Gaps = 35/346 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQ--WKNILDVG 56
+INA+LR FLR++ +I + + W +P W++N++K YP Q W+ I+D
Sbjct: 143 LINAVLRRFLREQEQILA-----VVDKNWQTLHPEWFVNKLKKAYPMQAQHNWREIVDAN 197
Query: 57 HKKPPLTLRINQRKTTLISYNKLL--KKSGLETTIIGPLAIKLHTPISISKIPKFFNGFC 114
++KPP+ +R+NQ+ + +Y LL ++ T + P A++L PIS+ +P F G+
Sbjct: 198 NQKPPMWIRVNQQHCSTENYRTLLLAEQELTSCTDVNPYALRLTQPISVKNLPHFAEGWA 257
Query: 115 SIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISE 173
++QD AQ ++ LL+ ++G +LDAC+APGGKT H+LE A K+I++D +RLN ++E
Sbjct: 258 TVQDVHAQWSSILLEPQNGELILDACAAPGGKTTHILEQAPQAKVIALDVEQNRLNRVTE 317
Query: 174 NLKRLNLKATLILSDISKINL---KKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSG 230
NL+RL KA +I D ++ + + I KKT+ +F DRIL D PC+ +G
Sbjct: 318 NLQRLQQKAVVICGDATQPDSWIPQAAEELIGKKTDLQF--------DRILLDAPCSATG 369
Query: 231 VVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIF 290
V+RR+PDI WLR++ DI+ L K KIL LWK LKP G LL+ TCSL EE+ +Q F
Sbjct: 370 VIRRHPDIKWLRQEQDIESLVKLQEKILEALWKKLKPNGILLYATCSLLPEENSQQITAF 429
Query: 291 SKNHKDSIRLNSP---------GQLLPTVNKKQDYDGFFYSLFQKR 327
++ P Q P+ +Q DGF+Y+ +K+
Sbjct: 430 LAKTPNAQLEQLPFEQAEGEIGKQFFPS---EQGGDGFYYAKLKKK 472
>gi|88860599|ref|ZP_01135236.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Pseudoalteromonas
tunicata D2]
gi|88817194|gb|EAR27012.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Pseudoalteromonas
tunicata D2]
Length = 429
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 119/339 (35%), Positives = 193/339 (56%), Gaps = 36/339 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR F R++ E+ ++ + +N+P W+I V+ YP +W+ IL ++
Sbjct: 114 LVNAVLRNFQRQQAEL-EAAANQVEVCLYNHPGWFIKAVQEAYPE--KWQTILAANQQQA 170
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LRINQ + + Y LL ++ + + A+ L P + +P F G CS+QD
Sbjct: 171 PMWLRINQSQYSTDQYLALLTEANIVARKVDGFCDAVLLEKPCDVFSLPGFAEGACSVQD 230
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKR 177
AAQ+AA L+ ++G +LDAC+APGGKTCH+LE+AD + + ++D + +RL + ENL R
Sbjct: 231 GAAQIAARLMAPQAGERILDACAAPGGKTCHILELADNLAVTALDCDETRLARVQENLSR 290
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
+ L+A L+ +D + N ++ + FD+IL D+PC+ +GV+RR+PD
Sbjct: 291 IGLQAQLLCADAA----------------NPDTWWDKETFDKILLDVPCSATGVIRRHPD 334
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR DI++L+ IL+ +W +LK GG L++ TCS+ +E+++Q F D+
Sbjct: 335 IKWLRRAADIEQLALLQSSILDKIWPLLKAGGTLVYATCSVLPQENKDQVKAFLARTDDA 394
Query: 298 IRL--------NSPG-QLLPTVNKKQDYDGFFYSLFQKR 327
I PG Q LP + DGF+Y+ KR
Sbjct: 395 IHQPLHDLDTHEQPGWQFLPELT-----DGFYYAKITKR 428
>gi|407792149|ref|ZP_11139220.1| 16S rRNA methyltransferase B [Gallaecimonas xiamenensis 3-C-1]
gi|407198006|gb|EKE68051.1| 16S rRNA methyltransferase B [Gallaecimonas xiamenensis 3-C-1]
Length = 431
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 125/333 (37%), Positives = 181/333 (54%), Gaps = 34/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++N +LR R+ + N + +P W + +++ YP QW+ I+D + +
Sbjct: 116 LVNGVLRNAERQGQALLDGAARNKAVASL-HPDWLLGRLRKAYPE--QWQAIIDANNTQA 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
PL LR NQR +Y LL+K+G+ L KL ++ +P F +G S+QD
Sbjct: 173 PLWLRANQRVQDRSAYLALLEKAGISAESEQSLTSGFKLVEAQDVTTLPGFSDGALSVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRL 178
AAQ AA LL + G +LDAC+APGGKT H+LE+AD K+ ++D + RL +SENL RL
Sbjct: 233 GAAQFAAELLAPKDGERILDACAAPGGKTAHILELADAKVTALDVSEQRLERVSENLARL 292
Query: 179 NLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDI 238
KA ++ +D S+ + ++ FDRIL D PC+ +GV+RR+PDI
Sbjct: 293 GFKAKVVAADASQRD-----------------WWDGVAFDRILLDAPCSATGVIRRHPDI 335
Query: 239 PWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSI 298
WLRR DI++L+K IL+N W MLKPGG LL+ TCS+ EE+ Q F D+
Sbjct: 336 RWLRRDQDIRELAKLQAAILDNCWAMLKPGGTLLYATCSVLPEENGAQIQAFLSRTPDAT 395
Query: 299 --------RLNSPG-QLLPTVNKKQDYDGFFYS 322
PG QLLP ++ DGFFY+
Sbjct: 396 LAPVRDGESAAQPGWQLLPG---DKEMDGFFYA 425
>gi|350529768|ref|ZP_08908709.1| 16S rRNA methyltransferase B [Vibrio rotiferianus DAT722]
Length = 427
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 120/335 (35%), Positives = 196/335 (58%), Gaps = 30/335 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R + E+ + + N Y +P W + ++ YP QW++I++ ++K
Sbjct: 113 LINAVLRNYQRNQEELDQMAVSNNAGKY-GHPSWLLKLLQEAYPE--QWESIVEANNQKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + T Y LLK +++T A+KL P + K+P F G+ S+QD
Sbjct: 170 PMWLRVNHQHHTRDDYLALLKNENIDSTPHSQAMDALKLAAPCDVMKLPGFEKGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQL+ L+ + G +LD C+APGGKT H+LE + +++++D + +RL + ENLKR
Sbjct: 230 AAAQLSINYLEPKDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKR 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
LNL+A ++ D N +++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 290 LNLQAKVVCGD----------------ARNPQEWWQGEQFDRILLDAPCSATGVIRRHPD 333
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI L++ +I + +W LKPGG +++ TCS+ +E+ EQ F D+
Sbjct: 334 IKWLRRADDIAALAELQSEIFDAMWTQLKPGGTMVYATCSITPQENVEQVKAFLARTADA 393
Query: 298 IRLNS----PG-QLLPTVNKKQDYDGFFYSLFQKR 327
++S PG Q+LP ++D DGF+Y++ K+
Sbjct: 394 QLMDSDPKQPGRQILPG---EEDMDGFYYAVLTKK 425
>gi|261364702|ref|ZP_05977585.1| ribosomal RNA small subunit methyltransferase B [Neisseria mucosa
ATCC 25996]
gi|288566995|gb|EFC88555.1| ribosomal RNA small subunit methyltransferase B [Neisseria mucosa
ATCC 25996]
Length = 419
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 124/327 (37%), Positives = 183/327 (55%), Gaps = 27/327 (8%)
Query: 3 NAILREFLRKKGEIFKS-KMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
NAILR FLR++ ++ S K ++ + N P+WW+ +K YP W NI PP
Sbjct: 118 NAILRRFLRERQKLEASCKKDDV--AKHNLPLWWVEYLKNHYPK--HWHNITTALQSHPP 173
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+TLR+N+R + SY + L G+ + A+ L + +S++P F G S+QD A
Sbjct: 174 MTLRVNRRHSNAESYLEKLAAEGIAAKALDEYAVTLDEAVPVSRLPGFAEGLVSVQDFGA 233
Query: 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181
Q AA LL+ + G +LDAC+APGGKT H+LE+AD + ++D + RL + +N+ RL +
Sbjct: 234 QQAAYLLNPKDGERILDACAAPGGKTGHMLELADCHVTALDIDEGRLKRVKDNIDRLGFQ 293
Query: 182 AT-LILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
T L +D + +Y K FD ILAD+PCT SGV RRNPD+ W
Sbjct: 294 TTALTCADAQDLAA----------------WYDGKPFDAILADVPCTASGVARRNPDVKW 337
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR D K ++ +L+ LW+ L G++L TCS++ EE++ Q F H D+ +
Sbjct: 338 LRRPTDAAKTARQQEALLDALWQTLTKNGRMLLATCSVFVEENDVQLQKFLNRHADAELI 397
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQKR 327
S LLP NK Q DGF+Y+L +K+
Sbjct: 398 ES-RVLLP--NKHQ--DGFYYALIKKQ 419
>gi|417321569|ref|ZP_12108105.1| 16S rRNA methyltransferase B [Vibrio parahaemolyticus 10329]
gi|328471169|gb|EGF42071.1| 16S rRNA methyltransferase B [Vibrio parahaemolyticus 10329]
Length = 427
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 122/336 (36%), Positives = 197/336 (58%), Gaps = 34/336 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R + E+ + + N + + +P W + ++ YP QW++I++ ++K
Sbjct: 113 LINAVLRNYQRNQEELDQMAVSN-NAGKYGHPSWLLKLLQEAYPQ--QWESIVEANNQKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT----IIGPLAIKLHTPISISKIPKFFNGFCSI 116
P+ LR+N + T Y LLK +++T +G AIKL P + K+P F G+ S+
Sbjct: 170 PMWLRVNHQHHTRDEYLALLKNENIDSTPHTEAMG--AIKLAAPCDVMKLPGFDKGWVSV 227
Query: 117 QDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENL 175
QDAAAQL+ L + G +LD C+APGGKT H+LE + +++++D + +RL + ENL
Sbjct: 228 QDAAAQLSINYLKPQDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENL 287
Query: 176 KRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRN 235
KRLNL+A ++ D N +++ + FDRIL D PC+ +GV+RR+
Sbjct: 288 KRLNLQAKVVCGD----------------ARNPQEWWQGEQFDRILLDAPCSATGVIRRH 331
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR +DI L++ +I + +W LKPGG +++ TCS+ +E+ EQ F
Sbjct: 332 PDIKWLRRADDIAALAELQSEIFDAMWTQLKPGGTMVYATCSITPQENVEQVKAFLARTA 391
Query: 296 DSIRLNS----PG-QLLPTVNKKQDYDGFFYSLFQK 326
D+ L+S PG Q+LP ++D DGF+Y++ K
Sbjct: 392 DAQLLDSDPDQPGRQILPG---EEDMDGFYYAVLTK 424
>gi|424048350|ref|ZP_17785903.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HENC-03]
gi|408882589|gb|EKM21395.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HENC-03]
Length = 427
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 120/335 (35%), Positives = 197/335 (58%), Gaps = 30/335 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R + E+ + + N Y +P W + ++ YP QW++I++ ++K
Sbjct: 113 LINAVLRNYQRNQEELDQMAVSNNAGKY-GHPSWLLKLLQEAYPE--QWESIVEANNQKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + T Y LLK +++T A+KL P + K+P F G+ S+QD
Sbjct: 170 PMWLRVNHQHHTRDEYLTLLKNENIDSTPHTQAMDALKLAAPCDVMKLPGFEKGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQL+ L+ + G +LD C+APGGKT H+LE + +++++D + +RL + ENLKR
Sbjct: 230 AAAQLSINYLEPKDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKR 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
LNL+A ++ D N ++++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 290 LNLQAKVVCGD----------------ARNPQKWWQGEQFDRILLDAPCSATGVIRRHPD 333
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI L++ +I + +W LKPGG +++ TCS+ +E+ EQ F D+
Sbjct: 334 IKWLRRADDIAALAELQSEIFDAMWTQLKPGGTMVYATCSITPQENVEQVKAFLARTADA 393
Query: 298 IRLNS----PG-QLLPTVNKKQDYDGFFYSLFQKR 327
++S PG Q+LP ++D DGF+Y++ K+
Sbjct: 394 QLVDSDPEQPGRQILPG---EEDMDGFYYAVLTKK 425
>gi|260901337|ref|ZP_05909732.1| ribosomal RNA small subunit methyltransferase B [Vibrio
parahaemolyticus AQ4037]
gi|308109871|gb|EFO47411.1| ribosomal RNA small subunit methyltransferase B [Vibrio
parahaemolyticus AQ4037]
Length = 427
Score = 224 bits (570), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 122/334 (36%), Positives = 194/334 (58%), Gaps = 30/334 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R + E+ + + N Y +P W + ++ YP QW++I++ ++K
Sbjct: 113 LINAVLRNYQRNQEELDQMAVSNNAGKY-GHPSWLLKLLQEAYPQ--QWESIVEANNQKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + T Y LLK +++T AIKL P + K+P F G+ S+QD
Sbjct: 170 PMWLRVNHQHHTRDEYLALLKNENIDSTPHTEAMDAIKLAAPCDVMKLPSFDKGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQL+ L + G +LD C+APGGKT H+LE + +++++D + +RL + ENLKR
Sbjct: 230 AAAQLSINYLKPQDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKR 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
LNL+A ++ D N +++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 290 LNLQAKVVCGD----------------ARNPQEWWQGEQFDRILLDAPCSATGVIRRHPD 333
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI L++ +I + +W LKPGG +++ TCS+ +E+ EQ F D+
Sbjct: 334 IKWLRRADDIAALAELQSEIFDAMWTQLKPGGTMVYATCSITPQENVEQVKAFLARTADA 393
Query: 298 IRLNS----PG-QLLPTVNKKQDYDGFFYSLFQK 326
L+S PG Q+LP ++D DGF+Y++ K
Sbjct: 394 QLLDSDPDQPGRQILPG---EEDMDGFYYAVLTK 424
>gi|300718674|ref|YP_003743477.1| 16S rRNA methyltransferase B [Erwinia billingiae Eb661]
gi|299064510|emb|CAX61630.1| 16S rRNA methyltransferase B [Erwinia billingiae Eb661]
Length = 429
Score = 224 bits (570), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 127/337 (37%), Positives = 200/337 (59%), Gaps = 34/337 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F RK+ E+ + N+ + + + W + ++K +PN W+ I++ +++P
Sbjct: 117 LINGVLRQFQRKQDELVQQ--MNVGDQKYLHSKWLLERLKRAWPN--NWEAIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL---AIKLHTPISISKIPKFFNGFCSIQ 117
P+ LR+N++ + ++ KLL+++G E PL A++L TP +S++P F G+ ++Q
Sbjct: 173 PMWLRVNRQHHSRDAWLKLLQEAGKEAEP-HPLHADALRLETPCPVSQLPGFDQGWVTVQ 231
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
DA+AQ LLD ++G +LD C+APGGKT H+LE A +++VD + RL I+ENL
Sbjct: 232 DASAQGCVALLDPQNGESILDLCAAPGGKTTHILEAAPQATVLAVDIDEQRLARINENLL 291
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RLN+ A + + D L + + +K FDRIL D PC+ +GV+RR+P
Sbjct: 292 RLNMTAEVKVGDGC---LPETWCG-------------DKQFDRILLDAPCSATGVIRRHP 335
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLRR DI +L+ +IL+ +W LKPGG LL+ TCS+ EE+ Q F + H+D
Sbjct: 336 DIKWLRRDRDIPELAALQQQILDAIWPHLKPGGTLLYATCSILPEENHLQVAAFLERHED 395
Query: 297 SI-----RLNSPG-QLLPTVNKKQDYDGFFYSLFQKR 327
++ N PG Q+ P QD DGFFY+ KR
Sbjct: 396 AMLSDTGDANHPGLQVFPA---PQDGDGFFYAKLLKR 429
>gi|354595948|ref|ZP_09013965.1| Ribosomal RNA small subunit methyltransferase B [Brenneria sp.
EniD312]
gi|353673883|gb|EHD19916.1| Ribosomal RNA small subunit methyltransferase B [Brenneria sp.
EniD312]
Length = 429
Score = 223 bits (569), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 119/328 (36%), Positives = 190/328 (57%), Gaps = 26/328 (7%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ N + +P W + ++K YP+ W+ I+D +++P
Sbjct: 117 LINGVLRQFQRQQDELLARAANN--PVRYLHPGWLLTRIKNAYPD--NWRQIVDANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + +Y LL ++G+E P AI+L P +++ +P F G+ ++QD
Sbjct: 173 PMWLRVNRLHHSRETYLALLGQAGIEAVTHADYPDAIRLVVPCAVNLLPGFEQGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LD +G +LD C+APGGKT H+LE A ++++VD + SRL+ I ENL+R
Sbjct: 233 ASAQGCVHWLDPHNGETILDLCAAPGGKTTHILEAAPQSQVLAVDIDESRLSRIRENLQR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L A ++L D + + + + FDRIL D PC+ +GVVRR+PD
Sbjct: 293 LQLHAQVVLGDGRQPE----------------SWSQGRTFDRILLDAPCSATGVVRRHPD 336
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI +L+ +IL +W LKPGG L++ TCS+ EE+++Q F + H D+
Sbjct: 337 IKWLRRDSDIAELALLQKEILEAVWPYLKPGGTLVYATCSIMPEENQQQVAGFLERHADA 396
Query: 298 IRLNSPGQLLPTVNK---KQDYDGFFYS 322
+ + P + K D DGFFY+
Sbjct: 397 TLVGTGSPQRPGIQKLPSPDDGDGFFYA 424
>gi|433659118|ref|YP_007276497.1| Ribosomal RNA small subunit methyltransferase B [Vibrio
parahaemolyticus BB22OP]
gi|432509806|gb|AGB11323.1| Ribosomal RNA small subunit methyltransferase B [Vibrio
parahaemolyticus BB22OP]
Length = 427
Score = 223 bits (569), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 122/336 (36%), Positives = 195/336 (58%), Gaps = 30/336 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R + E+ + + N Y +P W + ++ YP QW++I++ ++K
Sbjct: 113 LINAVLRNYQRNQEELDQMAVSNNAGKY-GHPSWLLKLLQEAYPQ--QWESIVEANNQKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + T Y LLK +++T AIKL P + K+P F G+ S+QD
Sbjct: 170 PMWLRVNHQHHTRDEYLALLKNENIDSTPHTEAMDAIKLAAPCDVMKLPGFDKGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQL+ L + G +LD C+APGGKT H+LE + +++++D + +RL + ENLKR
Sbjct: 230 AAAQLSINYLKPQDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKR 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
LNL+A ++ D N +++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 290 LNLQAKVVCGD----------------ARNPQEWWQGEQFDRILLDAPCSATGVIRRHPD 333
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI L++ +I + +W LKPGG +++ TCS+ +E+ EQ F D+
Sbjct: 334 IKWLRRADDIAALAELQSEIFDAMWTQLKPGGTMVYATCSITPQENVEQVKAFLARTADA 393
Query: 298 IRLNS----PG-QLLPTVNKKQDYDGFFYSLFQKRK 328
L+S PG Q+LP ++D DGF+Y++ K +
Sbjct: 394 QLLDSDPDQPGRQILPG---EEDMDGFYYAVLTKTR 426
>gi|123444066|ref|YP_001008036.1| 16S rRNA methyltransferase B [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|224493291|sp|A1JRZ3.1|RSMB_YERE8 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|122091027|emb|CAL13910.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 429
Score = 223 bits (569), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 121/336 (36%), Positives = 202/336 (60%), Gaps = 32/336 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + N +S++ +P W + ++K+ YP+ QW+ ILD ++KP
Sbjct: 117 LINGVLRQFQRQQVELLERAANN--DSHYLHPSWLLARIKLAYPD--QWQQILDANNQKP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + I Y +LLK++ +E P A++L TP ++S +P F G+ ++QD
Sbjct: 173 PMWLRVNRLHHSRIEYLELLKQANIEALPHDFYPDAVRLITPCAVSDLPGFELGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LLD + G +LD C+APGGKT H+LE A + +++VD + RL+ + ENL+R
Sbjct: 233 ASAQGCVDLLDPQDGEQILDLCAAPGGKTTHILEAAPKVHVLAVDIDEQRLSRVKENLQR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L A + + D +T + + ++ FDRIL D PC+ +GV+RR+PD
Sbjct: 293 LRLHADVRVGD--------------GRTPDEW--CGDQQFDRILLDAPCSATGVIRRHPD 336
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI +L++ +I+ +W LK GG +++ TCS+ EE+++Q F + H ++
Sbjct: 337 IKWLRRDSDIAELAQLQSEIIEAIWPKLKKGGVMVYATCSILPEENQQQIATFLQRHSEA 396
Query: 298 IRLNSPG------QLLPTVNKKQDYDGFFYSLFQKR 327
+ + Q LP +D DGF+Y+ KR
Sbjct: 397 DLVETGTVSALGRQNLP---HPEDGDGFYYAKLIKR 429
>gi|264676496|ref|YP_003276402.1| sun, tRNA and rRNA cytosine-C5-methylase [Comamonas testosteroni
CNB-2]
gi|262207008|gb|ACY31106.1| sun, tRNA and rRNA cytosine-C5-methylase [Comamonas testosteroni
CNB-2]
Length = 461
Score = 223 bits (569), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 124/343 (36%), Positives = 194/343 (56%), Gaps = 33/343 (9%)
Query: 2 INAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
INA LR FLR++ + S N + WN+P WWI ++K +P W+ IL + +PP
Sbjct: 132 INACLRRFLRER-DALVSATDNDPVAVWNHPAWWIARLKKDHPQ--DWQTILAANNAQPP 188
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+TLR+N +K+T Y L+ L++T + ++L + + ++P+F G+ S+QD AA
Sbjct: 189 MTLRVNAQKSTPAQYQNALQAMNLKSTAVAECGLQLEQAVPVQELPQFEEGWASVQDGAA 248
Query: 122 QLAAPLLDIRSG------MYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMIS 172
Q AAPLL + VLDAC+APGGKT HLLE A I++ +++ + R I
Sbjct: 249 QAAAPLLLAGLPEPQGRPLRVLDACAAPGGKTAHLLERAAPGGIEVTALEIDPERARRIG 308
Query: 173 ENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVV 232
E L RL LKA ++++D S + + + + FD IL D PCT SG+V
Sbjct: 309 ETLSRLGLKAKVLVADASA---PQAWFESQ---------CGGQLFDAILLDAPCTASGIV 356
Query: 233 RRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSK 292
RR PD+ WLRR++D+ +L+ ++L+ LW +L+PGG++++ TCS++ E + Q F
Sbjct: 357 RRQPDVRWLRRESDVTQLADIQSRLLDTLWPLLQPGGRMVYCTCSVFKAEGDAQMQAFLA 416
Query: 293 NHKDSIRLNSPGQLLPTVNKKQ---------DYDGFFYSLFQK 326
+ + L +PG L+P K D+DGFFY+L +K
Sbjct: 417 RNTTAASLPAPGHLIPGKAAKHDSVADNPLGDHDGFFYALLEK 459
>gi|375267072|ref|YP_005024515.1| 16S rRNA methyltransferase B [Vibrio sp. EJY3]
gi|369842392|gb|AEX23536.1| 16S rRNA methyltransferase B [Vibrio sp. EJY3]
Length = 427
Score = 223 bits (569), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 121/334 (36%), Positives = 195/334 (58%), Gaps = 30/334 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R + E+ + + + Y +P W + ++ YP QW++I++ ++K
Sbjct: 113 LINAVLRNYQRNQEELDEIAVSHNAGKY-GHPSWLLKLLQDAYPE--QWESIVEANNQKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + T Y LLK +E T A+KL P ++K+P F G+ S+QD
Sbjct: 170 PMWLRVNHQHHTRDEYLALLKNENIEATPHTEAMDALKLAAPCDVTKLPGFEKGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQL+ L+ + G +LD C+APGGKT H+LE + +++++D + +RL + ENLKR
Sbjct: 230 AAAQLSINYLEPKDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKR 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
LNL+A ++ D N +++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 290 LNLQAKVVCGD----------------ARNPQEWWQGEQFDRILLDAPCSATGVIRRHPD 333
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI L++ +I + +W LKPGG +++ TCS+ +E+ EQ F D+
Sbjct: 334 IKWLRRADDIAALAELQSEIFDAMWTQLKPGGTMVYATCSITPQENVEQVKAFLARTADA 393
Query: 298 IRLNS----PG-QLLPTVNKKQDYDGFFYSLFQK 326
L+S PG Q+LP ++D DGF+Y++ K
Sbjct: 394 KLLDSDPEHPGRQILPG---EEDMDGFYYAVLTK 424
>gi|254229997|ref|ZP_04923398.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. Ex25]
gi|262392829|ref|YP_003284683.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. Ex25]
gi|151937499|gb|EDN56356.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. Ex25]
gi|262336423|gb|ACY50218.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. Ex25]
Length = 427
Score = 223 bits (569), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 122/334 (36%), Positives = 194/334 (58%), Gaps = 30/334 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R + E+ + + N Y +P W + ++ YP QW++I++ ++K
Sbjct: 113 LINAVLRNYQRNQEELDQMAVSNNAGKY-GHPSWLLKLLQEAYPQ--QWESIVEANNQKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + T Y LLK +++T AIKL P + K+P F G+ S+QD
Sbjct: 170 PMWLRVNHQHHTRDEYLALLKNENIDSTPHTEAMDAIKLAAPCDVMKLPGFDKGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQL+ L + G +LD C+APGGKT H+LE + +++++D + +RL + ENLKR
Sbjct: 230 AAAQLSINYLKPQDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKR 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
LNL+A ++ D N +++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 290 LNLQAKVVCGD----------------ARNPQEWWQGEQFDRILLDAPCSATGVIRRHPD 333
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI L++ +I + +W LKPGG +++ TCS+ +E+ EQ F D+
Sbjct: 334 IKWLRRADDIAALAELQSEIFDAMWTQLKPGGTMVYATCSITPQENVEQVKAFLARTADA 393
Query: 298 IRLNS----PG-QLLPTVNKKQDYDGFFYSLFQK 326
L+S PG Q+LP ++D DGF+Y++ K
Sbjct: 394 QLLDSDPDQPGRQILPG---EEDMDGFYYAVLSK 424
>gi|451972172|ref|ZP_21925383.1| ribosomal RNA small subunit methyltransferase B [Vibrio
alginolyticus E0666]
gi|451931837|gb|EMD79520.1| ribosomal RNA small subunit methyltransferase B [Vibrio
alginolyticus E0666]
Length = 427
Score = 223 bits (569), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 122/334 (36%), Positives = 194/334 (58%), Gaps = 30/334 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R + E+ + + N Y +P W + ++ YP QW++I++ ++K
Sbjct: 113 LINAVLRNYQRNQEELDQMAVSNNAGKY-GHPSWLLKLLQEAYPQ--QWESIVEANNQKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + T Y LLK +++T AIKL P + K+P F G+ S+QD
Sbjct: 170 PMWLRVNHQHHTRDEYLALLKNENIDSTPHTEAMDAIKLAAPCDVMKLPGFDKGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQL+ L + G +LD C+APGGKT H+LE + +++++D + +RL + ENLKR
Sbjct: 230 AAAQLSINYLKPQDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKR 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
LNL+A ++ D N +++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 290 LNLQAKVVCGD----------------ARNPQEWWQGEQFDRILLDAPCSATGVIRRHPD 333
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI L++ +I + +W LKPGG +++ TCS+ +E+ EQ F D+
Sbjct: 334 IKWLRRADDIAALAELQSEIFDAMWTQLKPGGTMVYATCSITPQENVEQVKAFLARTADA 393
Query: 298 IRLNS----PG-QLLPTVNKKQDYDGFFYSLFQK 326
L+S PG Q+LP ++D DGF+Y++ K
Sbjct: 394 QLLDSDPDQPGRQILPG---EEDMDGFYYAVLTK 424
>gi|153837662|ref|ZP_01990329.1| ribosomal RNA small subunit methyltransferase B [Vibrio
parahaemolyticus AQ3810]
gi|149748952|gb|EDM59779.1| ribosomal RNA small subunit methyltransferase B [Vibrio
parahaemolyticus AQ3810]
Length = 427
Score = 223 bits (568), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 122/334 (36%), Positives = 194/334 (58%), Gaps = 30/334 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R + E+ + + N Y +P W + ++ YP QW++I++ ++K
Sbjct: 113 LINAVLRNYQRNQEELDQMAVSNNAGKY-GHPSWLLKLLQEAYPQ--QWESIVEANNQKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + T Y LLK +++T AIKL P + K+P F G+ S+QD
Sbjct: 170 PMWLRVNHQHHTRDEYLALLKNENIDSTPHTEAMDAIKLAAPCDVMKLPGFDKGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQL+ L + G +LD C+APGGKT H+LE + +++++D + +RL + ENLKR
Sbjct: 230 AAAQLSINYLKPQDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKR 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
LNL+A ++ D N +++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 290 LNLQAKVVCGD----------------ARNPQEWWQGEQFDRILLDAPCSATGVIRRHPD 333
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI L++ +I + +W LKPGG +++ TCS+ +E+ EQ F D+
Sbjct: 334 IKWLRRADDIAALAELQSEIFDAMWTQLKPGGTMVYATCSITPQENVEQVKAFLARTADA 393
Query: 298 IRLNS----PG-QLLPTVNKKQDYDGFFYSLFQK 326
L+S PG Q+LP ++D DGF+Y++ K
Sbjct: 394 QLLDSDPDQPGRQILPG---EEDMDGFYYAVLTK 424
>gi|422020862|ref|ZP_16367388.1| 16S rRNA methyltransferase B [Providencia alcalifaciens Dmel2]
gi|414100357|gb|EKT61976.1| 16S rRNA methyltransferase B [Providencia alcalifaciens Dmel2]
Length = 428
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 122/336 (36%), Positives = 197/336 (58%), Gaps = 31/336 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR FLR++ ++ + N S + +P W + +++ YP W+NI+D +++P
Sbjct: 117 LINGVLRSFLRQQVQLEERNTNN--NSQYLHPSWLLKRIQTAYPET--WQNIVDANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTI--IGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + T Y LL+++ + + P AI+L S++++P F +G+ ++QD
Sbjct: 173 PMWLRVNSQHHTAEQYLALLEQANITAYLHPSHPSAIRLEEATSVTRLPGFEDGWSTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
+AQ A LL +G +LD C+APGGKT H+LE+A +++VD + +RL + ENL+R
Sbjct: 233 VSAQGCAELLSPINGENILDLCAAPGGKTTHILELAPKAHVLAVDIDDARLKRVKENLQR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L AT+I D +K + K++ FDRIL D PC+ +GV+RR+PD
Sbjct: 293 LKQHATVIQGDGTKPE----------------EWAKDQLFDRILLDAPCSATGVIRRHPD 336
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI++LS+ +IL +W LKPGG L++ TCS+ EE+ +Q F H D+
Sbjct: 337 IKWLRRDSDIQELSQLQAQILEAVWSYLKPGGTLVYATCSIMPEENSQQIKHFLSKHVDA 396
Query: 298 IRLNSPG----QLLPTVNKKQDYDGFFYSLFQKRKE 329
R+N Q+LP+ DGFFY+ K+ +
Sbjct: 397 -RINDGTELGLQILPSATGG---DGFFYARLLKQAQ 428
>gi|429744970|ref|ZP_19278425.1| ribosomal RNA small subunit methyltransferase B [Neisseria sp. oral
taxon 020 str. F0370]
gi|429161629|gb|EKY04011.1| ribosomal RNA small subunit methyltransferase B [Neisseria sp. oral
taxon 020 str. F0370]
Length = 420
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 120/326 (36%), Positives = 184/326 (56%), Gaps = 25/326 (7%)
Query: 3 NAILREFLRKKGEIFK-SKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
NA+LR FLR++ ++ K ++ + +N P WW+ ++ YP W NI PP
Sbjct: 118 NAVLRRFLRERDKLAAWCKADDV--AKYNLPRWWLAYLQNHYPK--HWHNIAAALQSHPP 173
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+TLR+N+R SY L ++G+ + A+ + ++ +P F +G S+QD A
Sbjct: 174 MTLRVNRRHGNAESYLVKLAEAGIGARALDDYAVTPDEAVPVNSLPGFSDGLVSVQDFGA 233
Query: 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181
Q AA LL ++G +LDAC+APGGKT H+LE+AD ++ ++D + RL +++NL RL +
Sbjct: 234 QKAAYLLQPQNGERILDACAAPGGKTGHILEMADCEVTALDIDAGRLKRVADNLHRLGFQ 293
Query: 182 ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWL 241
+ + ++ +Y + FD +LAD+PCT SGVVRRNPDI WL
Sbjct: 294 TASLAAADARDLAS---------------WYDGRQFDAVLADVPCTASGVVRRNPDIKWL 338
Query: 242 RRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLN 301
R D K ++ +L+ LW +KPGG++LF TCSL+ EE+ Q F H D+ +
Sbjct: 339 RLPTDAAKTARQQEGLLDALWTTVKPGGRMLFATCSLFTEENSLQLQRFLARHADA-SCS 397
Query: 302 SPGQLLPTVNKKQDYDGFFYSLFQKR 327
P LLPT ++ DGFFY+L +KR
Sbjct: 398 DPQTLLPTPSQ----DGFFYALIRKR 419
>gi|386816647|ref|ZP_10103865.1| 16S rRNA m(5)C-967 methyltransferase [Thiothrix nivea DSM 5205]
gi|386421223|gb|EIJ35058.1| 16S rRNA m(5)C-967 methyltransferase [Thiothrix nivea DSM 5205]
Length = 432
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 129/339 (38%), Positives = 201/339 (59%), Gaps = 35/339 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++N +LR F+R++ I +++ + +P W + +++ +P+ W+NIL + P
Sbjct: 114 LVNGVLRGFIRRQASIL-AQVDTQPVACHAFPDWLLARIRQAWPD--AWENILAASNAHP 170
Query: 61 PLTLRINQRKTTLISYNKLLKKSGL--ETTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+TLR+NQR+ + +Y ++L+ +G+ ET A+ L TP+ + ++P F G S+QD
Sbjct: 171 PMTLRVNQRQQSTATYWQILRAAGIAAETVETVASALNLQTPVGVEQLPGFHEGTVSVQD 230
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
AAAQLAA LLD + GM+VLDAC+APGGKT HLLE D+ L ++D++ +RL ++ENL R
Sbjct: 231 AAAQLAAGLLDCQPGMHVLDACAAPGGKTSHLLETTTDLHLTAIDSSETRLRRVTENLSR 290
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L+L+A ++ +D ++ ++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 291 LHLQARVVAADAGELTA----------------WWDGQPFDRILLDAPCSATGVIRRHPD 334
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I LRR +DI L + +LNNLW L+PGGKLL+VTCS+ EE+ Q F D+
Sbjct: 335 IKVLRRDSDIAALQQEQAHLLNNLWPSLRPGGKLLYVTCSILPEENIRQVETFLGKQADA 394
Query: 298 IRLNSPG----------QLLPTVNKKQDYDGFFYSLFQK 326
L Q+LP +Q DGF+Y+L K
Sbjct: 395 RHLPIEAGWGHTLAIGRQILP---GEQGMDGFYYALLHK 430
>gi|332163229|ref|YP_004299806.1| 16S rRNA methyltransferase B [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|386310764|ref|YP_006006820.1| ribosomal RNA small subunit methyltransferase B [Yersinia
enterocolitica subsp. palearctica Y11]
gi|418243715|ref|ZP_12870175.1| 16S rRNA methyltransferase B [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|433549200|ref|ZP_20505246.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
enterocolitica IP 10393]
gi|318607711|emb|CBY29209.1| ribosomal RNA small subunit methyltransferase B [Yersinia
enterocolitica subsp. palearctica Y11]
gi|325667459|gb|ADZ44103.1| 16S rRNA methyltransferase B [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|351776783|gb|EHB19069.1| 16S rRNA methyltransferase B [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|431790241|emb|CCO68286.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
enterocolitica IP 10393]
Length = 429
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 122/336 (36%), Positives = 203/336 (60%), Gaps = 32/336 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + N +S++ +P W + ++K+ YP+ QW+ ILD ++KP
Sbjct: 117 LINGVLRQFQRQQVELLERAANN--DSHYLHPSWLLARIKLAYPD--QWQQILDANNQKP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+++ + I Y LLK++ +E P A++L TP ++S +P F G+ ++QD
Sbjct: 173 PMWLRVSRLHHSRIEYLGLLKQANIEALPHDFYPDAVRLITPCAVSDLPGFELGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LLD + G +LD C+APGGKT H+LE A +++VD + RL+ + ENL+R
Sbjct: 233 ASAQGCVDLLDPQEGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLSRVKENLQR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L A + + D +T + + ++ FDRIL D PC+ +GV+RR+PD
Sbjct: 293 LKLHADVRVGD--------------GRTPDEW--CGDQQFDRILLDAPCSATGVIRRHPD 336
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI +L++ +I+ +W LK GG +++ TCS+ EE+++Q F + H ++
Sbjct: 337 IKWLRRDSDIAELAQLQSEIIEAIWPKLKKGGVMVYATCSILPEENQQQIATFLQRHSEA 396
Query: 298 I-----RLNSPG-QLLPTVNKKQDYDGFFYSLFQKR 327
+++PG Q LP +D DGF+Y+ KR
Sbjct: 397 DLVETGTVSAPGKQNLP---HPEDGDGFYYAKLIKR 429
>gi|212709010|ref|ZP_03317138.1| hypothetical protein PROVALCAL_00042 [Providencia alcalifaciens DSM
30120]
gi|212688376|gb|EEB47904.1| hypothetical protein PROVALCAL_00042 [Providencia alcalifaciens DSM
30120]
Length = 428
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 122/336 (36%), Positives = 197/336 (58%), Gaps = 31/336 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR FLR++ ++ + N S + +P W + +++ YP W+NI+D +++P
Sbjct: 117 LINGVLRSFLRQQVQLEERNTNN--NSQYLHPSWLLKRIQTAYPET--WQNIVDANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTI--IGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + T Y LL+++ + + P AI+L S++++P F +G+ ++QD
Sbjct: 173 PMWLRVNSQHHTAEQYLALLEQADITAYLHPSHPSAIRLEEATSVTRLPGFEDGWSTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
+AQ A LL +G +LD C+APGGKT H+LE+A +++VD + +RL + ENL+R
Sbjct: 233 VSAQGCAELLSPINGENILDLCAAPGGKTTHILELAPKAHVLAVDIDDARLKRVKENLQR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L AT+I D +K + K++ FDRIL D PC+ +GV+RR+PD
Sbjct: 293 LKQHATVIQGDGTKPE----------------EWAKDQLFDRILLDAPCSATGVIRRHPD 336
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI++LS+ +IL +W LKPGG L++ TCS+ EE+ +Q F H D+
Sbjct: 337 IKWLRRDSDIQELSQLQAQILEAVWSYLKPGGTLVYATCSIMPEENSQQIKHFLSKHVDA 396
Query: 298 IRLNSPG----QLLPTVNKKQDYDGFFYSLFQKRKE 329
R+N Q+LP+ DGFFY+ K+ +
Sbjct: 397 -RINDGTELGLQILPSATGG---DGFFYARLLKQAQ 428
>gi|424034609|ref|ZP_17774012.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HENC-01]
gi|408872270|gb|EKM11491.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HENC-01]
Length = 427
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 120/335 (35%), Positives = 195/335 (58%), Gaps = 30/335 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R + E+ + + N Y +P W + ++ YP QW++I++ ++K
Sbjct: 113 LINAVLRNYQRNQEELDQMAVSNNAGKY-GHPSWLLKLLQEAYPQ--QWESIVEANNQKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + T Y LLK +++T A+KL P + K+P F G+ S+QD
Sbjct: 170 PMWLRVNHQHHTRDEYLALLKNENIDSTPHTQAMDALKLAAPCDVMKLPGFEKGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQL+ L+ + G +LD C+APGGKT H+LE + +++++D + +RL + ENLKR
Sbjct: 230 AAAQLSINYLEPKDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKR 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
LNL+A ++ D N +++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 290 LNLQAKVVCGD----------------ARNPQEWWQGEQFDRILLDAPCSATGVIRRHPD 333
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI L+ +I + +W LKPGG +++ TCS+ +E+ EQ F D+
Sbjct: 334 IKWLRRADDIAALADLQSEIFDAMWTQLKPGGTMVYATCSITPQENVEQVKAFLARTADA 393
Query: 298 IRLNS----PG-QLLPTVNKKQDYDGFFYSLFQKR 327
++S PG Q+LP ++D DGF+Y++ K+
Sbjct: 394 QLVDSNPKQPGRQILPG---EEDMDGFYYAVLTKK 425
>gi|343496686|ref|ZP_08734778.1| 16S rRNA methyltransferase B [Vibrio nigripulchritudo ATCC 27043]
gi|342820883|gb|EGU55690.1| 16S rRNA methyltransferase B [Vibrio nigripulchritudo ATCC 27043]
Length = 426
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 120/336 (35%), Positives = 201/336 (59%), Gaps = 32/336 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R + E+ ++ + + Y +P W + ++ YP QW+ I++ ++K
Sbjct: 113 LINAVLRNYQRNQEELDQAAVSHNAGKY-AHPSWLLKLLQDAYPE--QWETIIEANNQKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + + Y +LLK ++ + AIKL +P ++ +P F G+ S+QD
Sbjct: 170 PMWLRVNHQHHSRDEYLELLKNENIDASAHSEAEDAIKLASPKDVASLPGFEKGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQL+ L + G +LD C+APGGKT H+LE + ++++D + +RL + ENLKR
Sbjct: 230 AAAQLSFNYLKPKDGELILDCCAAPGGKTAHILERTTNSDVVAIDCDENRLKRVHENLKR 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
LNL+A ++ D N +++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 290 LNLQAKVVCGD----------------ARNPQEWWQGEQFDRILLDAPCSATGVIRRHPD 333
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI+ L++ +IL+ +W+ LKPGG L++ TCS+ +E++ Q I F + DS
Sbjct: 334 IKWLRRADDIEALAELQSEILDAMWQQLKPGGTLVYATCSITPQENKHQVIQFLER-TDS 392
Query: 298 IR-----LNSPG-QLLPTVNKKQDYDGFFYSLFQKR 327
+ L++PG Q+LP ++D DGF+Y++ K+
Sbjct: 393 AQLVGSELDNPGRQILPG---EEDMDGFYYAVLTKK 425
>gi|255067827|ref|ZP_05319682.1| ribosomal RNA small subunit methyltransferase B [Neisseria sicca
ATCC 29256]
gi|255047918|gb|EET43382.1| ribosomal RNA small subunit methyltransferase B [Neisseria sicca
ATCC 29256]
Length = 419
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 124/327 (37%), Positives = 182/327 (55%), Gaps = 27/327 (8%)
Query: 3 NAILREFLRKKGEIFKS-KMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
NAILR FLR++ ++ S K ++ + N P+WW+ +K YP W NI PP
Sbjct: 118 NAILRRFLRERDKLAASCKKDDV--AKHNLPLWWVAYLKNHYPK--HWHNITTALQSHPP 173
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+TLR+N+R SY + L G+ + A+ L + ++++P F G S+QD A
Sbjct: 174 MTLRVNRRHGNAESYLEKLAAEGIAAKALDEYAVTLEEAVPVNRLPGFAEGLVSVQDFGA 233
Query: 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181
Q AA LL+ + G +LDAC+APGGKT H+LE+AD + ++D + RL + +NL RL +
Sbjct: 234 QQAAYLLNPKDGERILDACAAPGGKTGHMLELADCHVTALDIDEGRLKRVKDNLDRLGFQ 293
Query: 182 AT-LILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
T L +D + +Y K FD ILAD+PCT SGV RRNPD+ W
Sbjct: 294 TTALACADAQDLAA----------------WYDGKPFDAILADVPCTASGVARRNPDVKW 337
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR D K ++ +L+ LW+ L G++L TCS++ EE++ Q F H D+ +
Sbjct: 338 LRRPTDAAKTARQQEALLDALWQTLTKNGRMLLATCSVFVEENDVQLQKFLNRHADAELI 397
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQKR 327
S LLP NK Q DGF+Y+L +K+
Sbjct: 398 ESR-VLLP--NKHQ--DGFYYALIKKQ 419
>gi|157959859|ref|YP_001499893.1| sun protein [Shewanella pealeana ATCC 700345]
gi|157844859|gb|ABV85358.1| sun protein [Shewanella pealeana ATCC 700345]
Length = 426
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 125/332 (37%), Positives = 191/332 (57%), Gaps = 34/332 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++N +LR R++ K + +N P W I ++K YP+ W+++++ H++P
Sbjct: 114 VVNGVLRNIQRQE----KPLATDNDTLAYNTPAWIIKRLKDAYPD--NWQSVIEQSHERP 167
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG---PLAIKLHTPISISKIPKFFNGFCSIQ 117
P+ LR NQ+ T +Y LL +GLE P +I L +P + ++P F G S+Q
Sbjct: 168 PMWLRNNQQSQTRETY--LLALAGLEIEAQAGNSPDSILLSSPRDVMQLPGFETGAASVQ 225
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
D AAQ AA LL + VLDAC+APGGKTCHLLE+A +IKL++VD + RL + +NL
Sbjct: 226 DGAAQWAATLLAPQGDELVLDACAAPGGKTCHLLELAPNIKLVAVDFDAKRLERVQQNLD 285
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL+LKA L+ D + I+ +++ FDRIL D PC+ +GV+RR+P
Sbjct: 286 RLSLKAELVHGDAANID----------------SWWQGDKFDRILLDAPCSATGVIRRHP 329
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR+ NDI++L++ +I ++ WK LKPGG LLF TCS+ +E+++Q F D
Sbjct: 330 DIKWLRKNNDIEELAQLQSQIFDHCWKWLKPGGTLLFATCSILPQENKDQVSAFLARTPD 389
Query: 297 SIRLNSPGQLLPT------VNKKQDYDGFFYS 322
+ + Q P V + + DGF+Y+
Sbjct: 390 ATLVPIEEQANPDDIGWQIVPGQDNMDGFYYA 421
>gi|422908559|ref|ZP_16943250.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HE-09]
gi|341640169|gb|EGS64761.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HE-09]
Length = 426
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 119/335 (35%), Positives = 195/335 (58%), Gaps = 30/335 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R + E ++ + + +P W + +K +YP QW+ I++ + K
Sbjct: 113 LINAVLRNYQRDQ-EGLDAQATSHDAGRYGHPGWLLKLLKESYPE--QWQQIVEANNSKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + T Y LL+++G+ TT A+ L TP + ++P F G+ S+QD
Sbjct: 170 PMWLRVNHQHHTRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQLA L ++G +LD C+APGGKT H+LE I + +++++D + +RL + ENL+R
Sbjct: 230 AAAQLALTYLAPQAGELILDCCAAPGGKTAHILERIPESQVVAIDCDETRLKRVRENLQR 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L A +I D ++++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 290 LQLTAQVICGDARYPQ----------------QWWQGEQFDRILLDAPCSATGVIRRHPD 333
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI L++ +IL+ +W+ LKPGG L++ TCS+ +E+ Q F + D+
Sbjct: 334 IKWLRRADDIAALAELQREILDAMWQQLKPGGSLVYATCSITPQENRLQVKAFLERTPDA 393
Query: 298 IRLNS----PG-QLLPTVNKKQDYDGFFYSLFQKR 327
+ S PG Q+LP ++ DGF+Y++ K+
Sbjct: 394 RLVGSDPAQPGRQILPG---EEAMDGFYYAVLSKQ 425
>gi|336450419|ref|ZP_08620870.1| ribosomal RNA small subunit methyltransferase RsmB [Idiomarina sp.
A28L]
gi|336282814|gb|EGN76035.1| ribosomal RNA small subunit methyltransferase RsmB [Idiomarina sp.
A28L]
Length = 458
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 127/361 (35%), Positives = 197/361 (54%), Gaps = 52/361 (14%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHES----YWNYPIWWINQVKITYPNFFQWKNILDVG 56
M+NA+LR + R++ E ++++ + +N+P W + +++ YP W I +
Sbjct: 117 MVNAVLRSYQRQQ-EALETQLAQLSAQTPALAYNHPGWLLKRLQNAYPQL--WPAICEAN 173
Query: 57 HKKPPLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSI 116
+ PPL LR+N + + Y LK +G+E AI+L I ++++P F G S+
Sbjct: 174 NIAPPLWLRVNTQHHSPAEYLAKLKAAGIEAYADKYSAIQLAQGIDVTQLPGFAEGHVSV 233
Query: 117 QDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENL 175
QD +AQ AA +L GM VLDAC+APGGKT HLLE ADI++ ++D + SRL + ENL
Sbjct: 234 QDRSAQFAAHILAAEPGMRVLDACAAPGGKTVHLLEHTADIQVTAIDFDASRLQRVHENL 293
Query: 176 KRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRN 235
R+ ++A +I D + N ++ + FDRIL D PC+ +GV+RR+
Sbjct: 294 TRMRVRAEVICGDAA----------------NPEEWWDGQLFDRILLDAPCSATGVIRRH 337
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEES--EEQAIIFSKN 293
PDI WLRR +DI L + +IL+ W++LKPGG+LL+ TCS+ EE+ + Q+ + + +
Sbjct: 338 PDIKWLRRADDIDALVELQSRILSAQWQLLKPGGRLLYATCSVLPEENILQIQSFLATVD 397
Query: 294 HKDSIRL----------------NSPG-QLLP---------TVNKKQDYDGFFYSLFQKR 327
++I + S G QLLP + + DGFFY L QKR
Sbjct: 398 DAEAIAIPIEKDTVGGAEALDNSASAGWQLLPGAADTKSTGSTGSTEGGDGFFYFLLQKR 457
Query: 328 K 328
K
Sbjct: 458 K 458
>gi|422305454|ref|ZP_16392658.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
CP1035(8)]
gi|408628844|gb|EKL01562.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
CP1035(8)]
Length = 426
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 119/335 (35%), Positives = 195/335 (58%), Gaps = 30/335 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R + E ++ + + +P W + +K +YP QW+ I++ + K
Sbjct: 113 LINAVLRNYQRDQ-EGLDAQATSHDAGRYGHPGWLLKLLKESYPE--QWQQIVEANNSKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + T Y LL+++G+ TT A+ L TP + ++P F G+ S+QD
Sbjct: 170 PMWLRVNHQHHTRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQLA L ++G +LD C+APGGKT H+LE I + +++++D + +RL + ENL+R
Sbjct: 230 AAAQLALTYLAPQAGELILDCCAAPGGKTAHILERIPESQVVAIDCDKTRLKRVRENLQR 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L A +I D ++++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 290 LQLTAQVICGDARYPQ----------------QWWQGEQFDRILLDAPCSATGVIRRHPD 333
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI L++ +IL+ +W+ LKPGG L++ TCS+ +E+ Q F + D+
Sbjct: 334 IKWLRRADDIAALAELQREILDAMWQQLKPGGSLVYATCSITPQENRLQVKAFLERTPDA 393
Query: 298 IRLNS----PG-QLLPTVNKKQDYDGFFYSLFQKR 327
+ S PG Q+LP ++ DGF+Y++ K+
Sbjct: 394 RLVGSDPAQPGRQILPG---EEAMDGFYYAVLSKQ 425
>gi|152977800|ref|YP_001343429.1| sun protein [Actinobacillus succinogenes 130Z]
gi|150839523|gb|ABR73494.1| sun protein [Actinobacillus succinogenes 130Z]
Length = 462
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 125/343 (36%), Positives = 199/343 (58%), Gaps = 32/343 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYW--NYPIWWINQVKITYPNFFQWKNILDVGHK 58
++N +LR FLR++ + + + +W N+P W +N++K YPN W++I+D ++
Sbjct: 138 LLNGVLRRFLREQESVLATV-----DKHWQTNHPEWLVNKLKKIYPN---WRDIIDANNR 189
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLET-TIIGPLAIKLHTPISISKIPKFFNGFCSIQ 117
KPP+ LR+N+ + +Y +LL ++ + T P A++L +P+ + ++P+F G+ ++Q
Sbjct: 190 KPPMWLRVNRIHGSTENYRQLLAENDMTACTDENPHALRLESPMPVQRLPRFAEGWVTVQ 249
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
D AQ + LL+ ++G +LDAC+APGGKT H+LE A K+++VD +RL I+ENL
Sbjct: 250 DVHAQWSGILLEPQNGELILDACAAPGGKTTHILEQAPQAKVVAVDVEENRLKRITENLA 309
Query: 177 RLNLKATLILSDISKIN--LKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRR 234
RLN +A +I D ++ L++ I+ + + FDRIL D PC+ SGV+RR
Sbjct: 310 RLNQQAIVICGDAARPETWLEQAAQQISGRKSA-------VQFDRILLDAPCSASGVIRR 362
Query: 235 NPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH 294
+PDI WLR++ DI L +IL LW LKP G LL+ TCS+ EE+ Q F H
Sbjct: 363 HPDIKWLRQEQDIAPLVDIQYQILTALWATLKPNGVLLYATCSVLPEENGRQIARFLAEH 422
Query: 295 KDSIRLNSP--------GQLLPTVNKKQDYDGFFYSLFQKRKE 329
D+ + P Q LPT N DGF+Y+ +K +
Sbjct: 423 TDAQLMPLPFSPPQEIGHQFLPTENGG---DGFYYAKLRKTAQ 462
>gi|424039271|ref|ZP_17777672.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HENC-02]
gi|408893176|gb|EKM30460.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HENC-02]
Length = 388
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 120/335 (35%), Positives = 195/335 (58%), Gaps = 30/335 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R + E+ + + N Y +P W + ++ YP QW++I++ ++K
Sbjct: 74 LINAVLRNYQRNQEELDQMAVSNNAGKY-GHPSWLLKLLQEAYPQ--QWESIVEANNQKA 130
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + T Y LLK +++T A+KL P + K+P F G+ S+QD
Sbjct: 131 PMWLRVNHQHHTRDEYLALLKNENIDSTPHTQAMDALKLAAPCDVMKLPGFEKGWVSVQD 190
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQL+ L+ + G +LD C+APGGKT H+LE + +++++D + +RL + ENLKR
Sbjct: 191 AAAQLSINYLEPKDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKR 250
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
LNL+A ++ D N +++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 251 LNLQAKVVCGD----------------ARNPQEWWQGEQFDRILLDAPCSATGVIRRHPD 294
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI L+ +I + +W LKPGG +++ TCS+ +E+ EQ F D+
Sbjct: 295 IKWLRRADDIAALADLQSEIFDAMWTQLKPGGTMVYATCSITPQENVEQVKAFLARTADA 354
Query: 298 IRLNS----PG-QLLPTVNKKQDYDGFFYSLFQKR 327
++S PG Q+LP ++D DGF+Y++ K+
Sbjct: 355 QLVDSDPKQPGRQILPG---EEDMDGFYYAVLTKK 386
>gi|270264342|ref|ZP_06192608.1| hypothetical protein SOD_h00090 [Serratia odorifera 4Rx13]
gi|270041478|gb|EFA14576.1| hypothetical protein SOD_h00090 [Serratia odorifera 4Rx13]
Length = 429
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 116/328 (35%), Positives = 193/328 (58%), Gaps = 26/328 (7%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + N +S + +P W + +++ YP QW+ I+D ++KP
Sbjct: 117 LINGVLRQFQRQQEELLQRAANN--DSRYLHPSWLLKRIQQAYPA--QWEQIIDANNQKP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGL--ETTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T Y +L++++G+ E P A++L P +++ +P F +G+ ++QD
Sbjct: 173 PMWLRVNRLHHTREDYLRLMEQAGIAAEPHAEYPDALRLLVPCAVTDLPGFADGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LLD ++G +LD C+APGGKT H+LE A +++VD + RL + ENL+R
Sbjct: 233 ASAQGCVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKAHVMAVDIDEQRLGRVKENLQR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L A + L D ++ +K FDRIL D PC+ +GV+RR+PD
Sbjct: 293 LRLHAEVKLGD----------------GRTPQQWCGDKQFDRILLDAPCSATGVIRRHPD 336
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI +L+K +I++ +W LK GG +++ TCS+ E+ EQ F + H D+
Sbjct: 337 IKWLRRDSDIAELAKLQAEIIDAIWPHLKSGGVMVYATCSILPTENAEQITAFLQRHPDA 396
Query: 298 IRLNSPGQLLP---TVNKKQDYDGFFYS 322
+ + + P + +D DGFFY+
Sbjct: 397 RLVETGDEQQPGRQNLPHPEDGDGFFYA 424
>gi|390951439|ref|YP_006415198.1| 16S rRNA m(5)C967 methyltransferase [Thiocystis violascens DSM 198]
gi|390428008|gb|AFL75073.1| 16S rRNA m(5)C-967 methyltransferase [Thiocystis violascens DSM
198]
Length = 457
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 115/337 (34%), Positives = 187/337 (55%), Gaps = 30/337 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR FLR++ E +++ + + W +P W + +++ +P W+ I+D + +P
Sbjct: 137 LVNALLRRFLRER-ETLLAEIEHEPGARWLFPDWLLTRLRRDWPE--DWERIVDASNARP 193
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + +L Y L +G+ + + + L P + +P F G S+QD
Sbjct: 194 PMALRVNRLRASLSDYADQLAAAGIAARPVPGCEMGLILDRPHATRDLPGFERGLVSVQD 253
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
+ AQLAA LD G VLDAC+APGGKT +LE AD + LI++D++ SRL+ + L
Sbjct: 254 SGAQLAAHWLDATPGQRVLDACAAPGGKTAAILERADNALDLIAIDSDASRLDTVRATLD 313
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A++I +D + + + FDRIL D+PC+ +GV+RR+P
Sbjct: 314 RLGLTASVIQADAAAPQ----------------GTWTERPFDRILLDVPCSATGVIRRHP 357
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLRR DI +L+ +L+ +W +L PGG+LL+ TCSL EE+ EQ F +
Sbjct: 358 DIKWLRRDRDIPELAATQAAMLDAIWPLLAPGGRLLYATCSLLAEENHEQIAAFLSRQPE 417
Query: 297 SIRLNSP---GQLLPTVNK----KQDYDGFFYSLFQK 326
+ + P GQ P + DGF+Y++ ++
Sbjct: 418 ARERDLPTASGQTCPRGRQWLPTPDGSDGFYYAIIER 454
>gi|323493837|ref|ZP_08098955.1| 16S rRNA methyltransferase B [Vibrio brasiliensis LMG 20546]
gi|323311971|gb|EGA65117.1| 16S rRNA methyltransferase B [Vibrio brasiliensis LMG 20546]
Length = 426
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 119/334 (35%), Positives = 197/334 (58%), Gaps = 30/334 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R + E+ + + + + +P W + ++ +YP QW+ I++ + K
Sbjct: 113 LINAVLRNYQRNQEEL-DAMAVSHNAGKYGHPGWLLKLLQESYPQ--QWQEIVEANNSKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + + Y +LLK ++ TI A+KL P ++K+P F G+ S+QD
Sbjct: 170 PMWLRVNHQHHSRDEYLELLKNENIDNTIHSEAEDAVKLAAPCDVTKLPGFEKGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQL+ L + G +LD C+APGGKT H+LE +++++D + +RL + +NL+R
Sbjct: 230 AAAQLSINYLTPQDGELILDCCAAPGGKTAHILERTQGSEVVAIDCDDTRLKRVHDNLQR 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
LNLKA +I D N +++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 290 LNLKAKVICGD----------------ARNPQDWWQGEQFDRILLDAPCSATGVIRRHPD 333
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI L++ +IL+ +W+ LKPGG L++ TCS+ +E++EQ F D+
Sbjct: 334 IKWLRRADDIAALAELQREILDAMWQQLKPGGTLVYATCSITPQENKEQVKAFLARTSDA 393
Query: 298 ----IRLNSPG-QLLPTVNKKQDYDGFFYSLFQK 326
+++PG Q+LP ++D DGF+Y++ K
Sbjct: 394 KLQGSDVDNPGRQILPG---EEDMDGFYYAILTK 424
>gi|421785890|ref|ZP_16222311.1| ribosomal RNA small subunit methyltransferase B [Serratia
plymuthica A30]
gi|407751928|gb|EKF62090.1| ribosomal RNA small subunit methyltransferase B [Serratia
plymuthica A30]
Length = 386
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 116/328 (35%), Positives = 193/328 (58%), Gaps = 26/328 (7%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + N +S + +P W + +++ YP QW+ I+D ++KP
Sbjct: 74 LINGVLRQFQRQQEELLQRAANN--DSRYLHPSWLLKRIQQAYPA--QWEQIIDANNQKP 129
Query: 61 PLTLRINQRKTTLISYNKLLKKSGL--ETTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T Y +L++++G+ E P A++L P +++ +P F +G+ ++QD
Sbjct: 130 PMWLRVNRLHHTREDYLRLMEQAGIAAEPHAEYPDALRLLVPCAVTDLPGFADGWVTVQD 189
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LLD ++G +LD C+APGGKT H+LE A +++VD + RL + ENL+R
Sbjct: 190 ASAQGCVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKAHVMAVDIDEQRLGRVKENLQR 249
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L A + L D ++ +K FDRIL D PC+ +GV+RR+PD
Sbjct: 250 LRLHAEVKLGD----------------GRTPQQWCGDKQFDRILLDAPCSATGVIRRHPD 293
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI +L+K +I++ +W LK GG +++ TCS+ E+ EQ F + H D+
Sbjct: 294 IKWLRRDSDIAELAKLQAEIIDAIWPHLKSGGVMVYATCSILPTENAEQITAFLQRHPDA 353
Query: 298 IRLNSPGQLLP---TVNKKQDYDGFFYS 322
+ + + P + +D DGFFY+
Sbjct: 354 RLVETGDEQQPGRQNLPHPEDGDGFFYA 381
>gi|419796005|ref|ZP_14321579.1| ribosomal RNA small subunit methyltransferase B [Neisseria sicca
VK64]
gi|385699958|gb|EIG30221.1| ribosomal RNA small subunit methyltransferase B [Neisseria sicca
VK64]
Length = 419
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 124/327 (37%), Positives = 182/327 (55%), Gaps = 27/327 (8%)
Query: 3 NAILREFLRKKGEIFKS-KMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
NAILR FLR++ ++ S K ++ + N P+WW+ +K YP W NI PP
Sbjct: 118 NAILRRFLRERQKLEASCKKDDV--AKHNLPLWWVAYLKNHYPK--HWHNITTALQSHPP 173
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+TLR+N+R SY + L G+ + A+ L + ++++P F G S+QD A
Sbjct: 174 MTLRVNRRHGNAESYLEKLAAEGISAKALDEYAVTLEEAVPVNRLPGFAEGLVSVQDFGA 233
Query: 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181
Q AA LL+ + G +LDAC+APGGKT H+LE+AD + ++D + RL + +NL RL +
Sbjct: 234 QQAAYLLNPKDGERILDACAAPGGKTGHMLELADCHVTALDIDEGRLKRVKDNLDRLGFQ 293
Query: 182 AT-LILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
T L +D + +Y K FD ILAD+PCT SGV RRNPD+ W
Sbjct: 294 TTALACADAQDLAA----------------WYDGKPFDAILADVPCTASGVARRNPDVKW 337
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR D K ++ +L+ LW+ L G++L TCS++ EE++ Q F H D+ +
Sbjct: 338 LRRPTDAAKTARQQEALLDALWQTLTKNGRMLLATCSVFVEENDVQLQKFLNRHADAELI 397
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQKR 327
S LLP NK Q DGF+Y+L +K+
Sbjct: 398 ESR-VLLP--NKHQ--DGFYYALIKKQ 419
>gi|343507208|ref|ZP_08744650.1| ribosomal RNA small subunit methyltransferase B [Vibrio
ichthyoenteri ATCC 700023]
gi|342800228|gb|EGU35768.1| ribosomal RNA small subunit methyltransferase B [Vibrio
ichthyoenteri ATCC 700023]
Length = 426
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 118/337 (35%), Positives = 198/337 (58%), Gaps = 34/337 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR +LR + E+ + + + + +P W + ++ YP QW+NI++ + K
Sbjct: 113 LINAVLRNYLRNQEEL-DAIAVSHNAGKYGHPSWLLKLLQEHYPQ--QWENIVEANNSKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKS--GLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N++ T Y L++++ G AIKL +P ++ +P F G+ S+QD
Sbjct: 170 PMWLRVNRQHHTRDEYVALMQQAEIGCSVHAYAADAIKLDSPCDVTLLPGFDKGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQL+ L + G +LD C+APGGKT H+LE D +++++D++ +RLN + +NL+R
Sbjct: 230 AAAQLSVDYLTPKDGELILDCCAAPGGKTAHILEHTVDTEVVAIDSDATRLNRVYDNLER 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L L+A +I D R+ +++ + FDRIL D PC+ +GV+RR+
Sbjct: 290 LQLRADVICGDA------------------RYPQEWWQGEQFDRILLDAPCSATGVIRRH 331
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIF----S 291
PDI WLRR NDI+ L+ +IL+ +W+ LK GG L++ TCS+ +E+++Q F +
Sbjct: 332 PDIKWLRRANDIEALAALQSEILDAMWQQLKVGGTLVYATCSITPQENKDQVKAFLARTA 391
Query: 292 KNHKDSIRLNSPG-QLLPTVNKKQDYDGFFYSLFQKR 327
+ +PG Q+LP ++D DGF+Y++ KR
Sbjct: 392 NAELQGSDIENPGRQILP---GEEDMDGFYYAVMTKR 425
>gi|349610700|ref|ZP_08890033.1| ribosomal RNA small subunit methyltransferase B [Neisseria sp.
GT4A_CT1]
gi|348609576|gb|EGY59312.1| ribosomal RNA small subunit methyltransferase B [Neisseria sp.
GT4A_CT1]
Length = 419
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 125/327 (38%), Positives = 182/327 (55%), Gaps = 27/327 (8%)
Query: 3 NAILREFLRKKGEIFKS-KMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
NAILR FLR++ ++ S K ++ + N P+WW+ +K YP W NI PP
Sbjct: 118 NAILRRFLRERQKLEASCKKDDV--AKHNLPLWWVAYLKNHYPK--HWHNITTALQSHPP 173
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+TLR+N+R SY + L G+ + A+ L + +S++P F G S+QD A
Sbjct: 174 MTLRVNRRHGNAESYLEKLAAEGIVAKALDEYAVTLDEAVPVSRLPGFAEGLVSVQDFGA 233
Query: 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181
Q AA LL+ + G +LDAC+APGGKT H+LE+AD + ++D + RL + +NL RL +
Sbjct: 234 QQAAYLLNPKDGERILDACAAPGGKTGHMLELADCHVTALDIDEGRLKRVKDNLDRLGFQ 293
Query: 182 AT-LILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
T L +D + +Y K FD ILAD+PCT SGV RRNPD+ W
Sbjct: 294 TTALACADAQDLAA----------------WYDGKPFDAILADVPCTASGVARRNPDVKW 337
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR D K ++ +L+ LW+ L G++L TCS++ EE++ Q F H D+ +
Sbjct: 338 LRRPTDAAKTARQQEALLDALWQTLTKNGRMLLATCSVFVEENDVQLQKFLNRHADAELI 397
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQKR 327
S LLP NK Q DGF+Y+L +K+
Sbjct: 398 ESR-VLLP--NKHQ--DGFYYALIKKQ 419
>gi|448748146|ref|ZP_21729791.1| rRNA small subunit methyltransferase B [Halomonas titanicae BH1]
gi|445564267|gb|ELY20391.1| rRNA small subunit methyltransferase B [Halomonas titanicae BH1]
Length = 444
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 124/344 (36%), Positives = 189/344 (54%), Gaps = 40/344 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++N LR L+++ E ++++ +P W +N ++ +P QW+ I++ ++
Sbjct: 122 VLNGCLRR-LQRESEALQAQVDRDESVALEHPPWLLNALRQAWPE--QWRAIVEANNQSG 178
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTII--GPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+TLR+NQ +Y L + GL + P AI L TP ++ +P F G S+QD
Sbjct: 179 PMTLRVNQHHNDREAYLSQLTEQGLSGHLCPHAPDAITLETPCDVTALPGFEAGHISVQD 238
Query: 119 AAAQLAA----PLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISEN 174
AAQL+A P+L R G +VLDAC APGGKT HLLE+ DI L ++D++ RL + +
Sbjct: 239 EAAQLSAVLLGPVLAPRPGAHVLDACCAPGGKTAHLLELFDINLTAIDSDNQRLARVEDT 298
Query: 175 LKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRR 234
L RL ++A L +D ++ + ++ FD IL D PC+G+GV+RR
Sbjct: 299 LTRLGVEAVLQHADATERD-----------------WWSGTPFDAILLDAPCSGTGVIRR 341
Query: 235 NPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH 294
+PDI LRRK+DI+ L+K ++L+NLW ML+ GG LL+ TCS+ EE+ EQ F
Sbjct: 342 HPDIKKLRRKDDIRPLAKLQRQLLDNLWPMLREGGTLLYATCSVLPEENSEQIEAFLART 401
Query: 295 KDS-----------IRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 327
D+ I + QL P N +DGFFY+ +KR
Sbjct: 402 PDAHVTTPNDVAWGISSGAGRQLFPAQNS---HDGFFYARLEKR 442
>gi|340363535|ref|ZP_08685865.1| ribosomal RNA small subunit methyltransferase B [Neisseria macacae
ATCC 33926]
gi|339885680|gb|EGQ75387.1| ribosomal RNA small subunit methyltransferase B [Neisseria macacae
ATCC 33926]
Length = 419
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 124/327 (37%), Positives = 182/327 (55%), Gaps = 27/327 (8%)
Query: 3 NAILREFLRKKGEIFKS-KMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
NAILR FLR++ ++ S K ++ + N P+WW+ +K YP W NI PP
Sbjct: 118 NAILRRFLRERDKLAASCKKDDV--AKHNLPLWWVAYLKNHYPK--HWHNITTALQSHPP 173
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+TLR+N+R SY + L G+ + A+ L + ++++P F G S+QD A
Sbjct: 174 MTLRVNRRHGNAESYLEKLAAEGIVAKALDEYAVTLEEAVPVNRLPGFAEGLVSVQDFGA 233
Query: 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181
Q AA LL+ + G +LDAC+APGGKT H+LE+AD + ++D + RL + +NL RL +
Sbjct: 234 QQAAYLLNPKDGERILDACAAPGGKTGHMLELADCHVTALDIDEGRLKRVKDNLDRLGFQ 293
Query: 182 AT-LILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
T L +D + +Y K FD ILAD+PCT SGV RRNPD+ W
Sbjct: 294 TTALACADAQDLAA----------------WYDGKPFDAILADVPCTASGVARRNPDVKW 337
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR D K ++ +L+ LW+ L G++L TCS++ EE++ Q F H D+ +
Sbjct: 338 LRRPTDAAKTARQQEALLDALWQTLTKNGRMLLATCSVFVEENDVQLQKFLNRHADAELI 397
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQKR 327
S LLP NK Q DGF+Y+L +K+
Sbjct: 398 ESR-VLLP--NKHQ--DGFYYALIKKQ 419
>gi|262191295|ref|ZP_06049489.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae CT
5369-93]
gi|262032833|gb|EEY51377.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae CT
5369-93]
Length = 426
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 119/335 (35%), Positives = 194/335 (57%), Gaps = 30/335 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R + E ++ + + +P W + +K +YP QW+ I++ + K
Sbjct: 113 LINAVLRNYQRDQ-EGLDAQATSHDAGRYGHPGWLLKLLKESYPE--QWQQIVEANNSKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + T Y LL+++G+ TT A+ L TP + ++P F G+ S+QD
Sbjct: 170 PMWLRVNHQHHTRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQLA L ++G +LD C+APGGKT H+LE + +++++D + +RL + ENL+R
Sbjct: 230 AAAQLALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQR 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L A +I D ++++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 290 LQLTAQVICGDARYPQ----------------QWWQGEQFDRILLDAPCSATGVIRRHPD 333
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI L++ +IL+ +W+ LKPGG LL+ TCS+ +E+ Q F + D+
Sbjct: 334 IKWLRRADDIAALAELQREILDAMWQQLKPGGSLLYATCSITPQENRLQVKAFLERTPDA 393
Query: 298 IRLNS----PG-QLLPTVNKKQDYDGFFYSLFQKR 327
+ S PG Q+LP ++ DGF+Y++ K+
Sbjct: 394 RLVGSDPAQPGRQILPG---EEAMDGFYYAVLSKQ 425
>gi|422921290|ref|ZP_16954538.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
BJG-01]
gi|341649364|gb|EGS73342.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
BJG-01]
Length = 426
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 119/335 (35%), Positives = 194/335 (57%), Gaps = 30/335 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R + E ++ + + +P W + +K +YP QW+ I++ + K
Sbjct: 113 LINAVLRNYQRDQ-EGLDAQATSHDAGRYGHPGWLLKLLKESYPE--QWQQIVEANNSKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + T Y LL+++G+ TT A+ L TP + ++P F G+ S+QD
Sbjct: 170 PMWLRVNHQHHTRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQLA L ++G +LD C+APGGKT H+LE + +++++D + +RL + ENL+R
Sbjct: 230 AAAQLALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQR 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L A +I D ++++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 290 LQLTAQVICGDARYPQ----------------QWWQGEQFDRILLDAPCSATGVIRRHPD 333
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI L++ +IL+ +WK LKPGG L++ TCS+ +E+ Q F + D+
Sbjct: 334 IKWLRRADDIAALAELQREILDAMWKQLKPGGSLVYATCSITPQENRLQVKAFLERTPDA 393
Query: 298 IRLNS----PG-QLLPTVNKKQDYDGFFYSLFQKR 327
+ S PG Q+LP ++ DGF+Y++ K+
Sbjct: 394 RLVGSDPAQPGRQILPG---EEAMDGFYYAVLSKQ 425
>gi|325577101|ref|ZP_08147585.1| RNA methyltransferase Sun [Haemophilus parainfluenzae ATCC 33392]
gi|325160683|gb|EGC72804.1| RNA methyltransferase Sun [Haemophilus parainfluenzae ATCC 33392]
Length = 445
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 126/340 (37%), Positives = 198/340 (58%), Gaps = 35/340 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
++N +LR FLR+K +I ++ + +W +P W++N++K YPN W+ I++ ++
Sbjct: 126 LVNGVLRRFLREKEDIL-----SVVDKHWQTLHPEWFVNKIKKAYPN---WREIIEANNQ 177
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLET-TIIGPLAIKLHTPISISKIPKFFNGFCSIQ 117
KPP+ LR+NQ++ +Y LL+K + P A++L P+S+SK+P F G ++Q
Sbjct: 178 KPPMWLRVNQQQNNTKTYRTLLEKQEIAAFECDNPHALRLAQPLSVSKLPNFEQGAVTVQ 237
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
D AQ +A LL+ ++G +LDAC+APGGKT H+LE+A K+I++D RL + ENL
Sbjct: 238 DLNAQWSALLLEPQNGELILDACAAPGGKTTHILEMAPQAKVIALDVEAHRLKRVEENLS 297
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RLN +AT++ D ++ +K +I FDRIL D PC+ +GV+RR+P
Sbjct: 298 RLNQQATVVCGDATEP--EKWLSEIG---------LSGASFDRILLDAPCSATGVIRRHP 346
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR++ DI +L +IL LW LKP G LL+ TCS+ +E+ +Q F +
Sbjct: 347 DIKWLRQETDIAQLVALQGQILKALWAKLKPNGILLYATCSVLPDENSQQIQRFLAETSN 406
Query: 297 SIRL--------NSPG-QLLPTVNKKQDYDGFFYSLFQKR 327
+ + N+ G Q LP N DGF+Y+ +KR
Sbjct: 407 AELMPLPFEQTENTIGIQFLPQENGG---DGFYYAKLRKR 443
>gi|315635055|ref|ZP_07890336.1| RNA methyltransferase Sun [Aggregatibacter segnis ATCC 33393]
gi|315476317|gb|EFU67068.1| RNA methyltransferase Sun [Aggregatibacter segnis ATCC 33393]
Length = 453
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 127/348 (36%), Positives = 199/348 (57%), Gaps = 44/348 (12%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
++N +LR FLR++ +I I + +W +P W++N++K +YPN W+ I+D ++
Sbjct: 129 LVNGVLRRFLREQDDILA-----IVDKHWQTLHPDWFVNKLKKSYPN---WREIIDANNQ 180
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLETTIIG-PLAIKLHTPISISKIPKFFNGFCSIQ 117
KPP+ LR+N +K +L +Y LL ET + P A+ L P ++ +P F G ++Q
Sbjct: 181 KPPMWLRVNTQKNSLETYRTLLAAQQTETQVTSHPQALGLTQPTAVQNLPLFAEGGVTVQ 240
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISEN 174
D AQ AA LL ++ +LDAC+APGGKT H+LE+A D+ + V+ N RL + EN
Sbjct: 241 DLHAQWAALLLQPQNHEVILDACAAPGGKTTHILELAPQADVMALDVEEN--RLQRVKEN 298
Query: 175 LKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRR 234
L R+ +AT++ D + + ++D K+ RF DRIL D PC+ +GV+RR
Sbjct: 299 LARMQQQATVVCGDAAN---PQAWLDKLGKSAVRF--------DRILLDAPCSATGVIRR 347
Query: 235 NPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH 294
+PDI WLR++ DIK+L +IL+ LW LKP G LL+ TCS+ EE+ +Q F +N
Sbjct: 348 HPDIKWLRKEADIKQLVALQGQILDALWHYLKPNGVLLYATCSVLAEENSQQIERFLQNT 407
Query: 295 KDS--IRLNSPG------------QLLPTVNKKQDYDGFFYSLFQKRK 328
D+ + L+ P Q +P ++ DGF+Y+ KR+
Sbjct: 408 PDAQLLPLDLPPDVLERNQSAVGFQFIPQIDGG---DGFYYAKLVKRQ 452
>gi|359393984|ref|ZP_09187037.1| Ribosomal RNA small subunit methyltransferase B [Halomonas
boliviensis LC1]
gi|357971231|gb|EHJ93676.1| Ribosomal RNA small subunit methyltransferase B [Halomonas
boliviensis LC1]
Length = 445
Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 125/344 (36%), Positives = 187/344 (54%), Gaps = 40/344 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++N LR L+++ E ++++ +P W +N ++ +P QW++I+D ++
Sbjct: 123 VLNGCLRR-LQRESEALQAEVDRDESVALEHPPWLLNALRQAWPE--QWRDIMDANNQSG 179
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTII--GPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+TLR+NQ Y +L + GL + P AI L TP ++ +P F G S+QD
Sbjct: 180 PMTLRVNQHHNDREVYLGMLTEKGLSGHLCPHAPDAITLETPCDVTALPGFEEGHVSVQD 239
Query: 119 AAAQLAA----PLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISEN 174
AAQL+A P L R G VLDAC APGGKT HLLE DI L ++D++ RL + +
Sbjct: 240 EAAQLSAALLGPSLAPRPGARVLDACCAPGGKTAHLLEQFDIALTAIDSDNQRLARVEDT 299
Query: 175 LKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRR 234
L RL ++A L +D ++ + ++ FD IL D PC+G+GV+RR
Sbjct: 300 LSRLGVEAVLEHADATERD-----------------WWSGTPFDAILLDAPCSGTGVIRR 342
Query: 235 NPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH 294
+PDI LRRK+DI+ L+K ++L+NLW ML+ GG LL+ TCS+ EE+ EQ F
Sbjct: 343 HPDIKKLRRKDDIRPLAKLQRQLLDNLWPMLREGGTLLYATCSVLPEENSEQIEAFLART 402
Query: 295 KDS-----------IRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 327
D+ I + QL P N +DGFFY+ +KR
Sbjct: 403 PDAHVTTPNDVAWGIASGAGRQLFPAQNS---HDGFFYARLEKR 443
>gi|343515774|ref|ZP_08752824.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. N418]
gi|342797730|gb|EGU33371.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. N418]
Length = 426
Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 118/337 (35%), Positives = 198/337 (58%), Gaps = 34/337 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR +LR + E+ + + + + +P W + ++ YP QW+NI++ + K
Sbjct: 113 LINAVLRNYLRNQEEL-DAIAVSHNAGKYGHPSWLLKLLQEHYPQ--QWENIVEANNSKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKS--GLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N++ T Y L++++ G AIKL +P ++ +P F G+ S+QD
Sbjct: 170 PMWLRVNRQHHTRDEYLALMQEAEIGCSVHAYAADAIKLDSPCDVTLLPGFDKGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQL+ L + G +LD C+APGGKT H+LE D +++++D++ +RLN + +NL+R
Sbjct: 230 AAAQLSVDYLTPKDGELILDCCAAPGGKTAHILEHTVDTEVVAIDSDATRLNRVYDNLER 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L L+A +I D R+ +++ + FDRIL D PC+ +GV+RR+
Sbjct: 290 LQLRADVICGDA------------------RYPQEWWQGEQFDRILLDAPCSATGVIRRH 331
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIF----S 291
PDI WLRR NDI+ L+ +IL+ +W+ LK GG L++ TCS+ +E+++Q F +
Sbjct: 332 PDIKWLRRANDIEALAALQSEILDAMWQQLKVGGTLVYATCSITPQENKDQVKAFLARTA 391
Query: 292 KNHKDSIRLNSPG-QLLPTVNKKQDYDGFFYSLFQKR 327
+ +PG Q+LP ++D DGF+Y++ KR
Sbjct: 392 NAELQGSDIENPGRQILP---GEEDMDGFYYAVMTKR 425
>gi|384083013|ref|ZP_09994188.1| 16S rRNA methyltransferase B [gamma proteobacterium HIMB30]
Length = 438
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 122/334 (36%), Positives = 191/334 (57%), Gaps = 28/334 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR+F+RKK E+ + + ++ WN+P W I+ ++ ++P++ W+ IL + P
Sbjct: 115 LINAVLRQFIRKKSELKMER--HSKQTLWNHPTWLIDTIQDSWPDY--WEQILVENNVHP 170
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLET-TIIGPLAIKLHTPISISKIPKFFNGFCSIQDA 119
P+TLR+N+ KT +Y K L+ G+ + P +++L P+++ + F G S+QD
Sbjct: 171 PMTLRVNRTKTDRDTYIKSLESQGIHAESGSSPDSVRLSEPMAVQSLDGFAEGLVSVQDE 230
Query: 120 AAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLN 179
++Q A+ +LD + +LDAC+APGGKTCHLLEIAD ++ ++D + RL+ I ENL RL
Sbjct: 231 SSQWASIILDPQPNERILDACAAPGGKTCHLLEIADAQITALDVSEQRLSRIKENLVRLG 290
Query: 180 LKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIP 239
L+A LI +D S + ++ K FD IL DLPC+ +GV+RRNPD+
Sbjct: 291 LRADLIAADASHMG----------------SWWDQKPFDAILLDLPCSATGVIRRNPDVR 334
Query: 240 WLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIR 299
+R + +K L IL+ W+ LK G+ L TCS+ +E+E Q F H D+
Sbjct: 335 LMRSEASLKSLLGMQSMILDATWETLKINGRFLVTTCSILPQENEHQIRKFLDRHSDAAL 394
Query: 300 L---NSPGQLLPTVNK----KQDYDGFFYSLFQK 326
+ + PG P + DGFFYSL K
Sbjct: 395 VQIEDVPGIHTPYGIQNFPLHTGGDGFFYSLLVK 428
>gi|294638022|ref|ZP_06716282.1| ribosomal RNA small subunit methyltransferase B [Edwardsiella tarda
ATCC 23685]
gi|451967545|ref|ZP_21920784.1| 16S rRNA methyltransferase RsmB [Edwardsiella tarda NBRC 105688]
gi|291088814|gb|EFE21375.1| ribosomal RNA small subunit methyltransferase B [Edwardsiella tarda
ATCC 23685]
gi|451313644|dbj|GAC66146.1| 16S rRNA methyltransferase RsmB [Edwardsiella tarda NBRC 105688]
Length = 430
Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 119/332 (35%), Positives = 191/332 (57%), Gaps = 34/332 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + H S+W +P W + +++ YP QW I++ +++P
Sbjct: 118 LINGVLRQFQRQQEALLLQSQQ--HASHWLHPSWLLKRLQHAYPE--QWPAIVEANNQRP 173
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R T +Y LL+++G+E P AI+L ++++P F +G+ ++QD
Sbjct: 174 PMWLRVNRRHHTRDAYLTLLQQAGIEAVAHDHFPDAIRLLVAQPVTRLPGFEHGWVTVQD 233
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LLD G +LD C APGGKT H+LE A ++++VD + RL + ENL+R
Sbjct: 234 ASAQHCVDLLDPHDGEQILDLCCAPGGKTTHILEAAPKAQVLAVDADEQRLKRVRENLQR 293
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L +A + D +T + + + FDRIL D PC+ +GV+RR+PD
Sbjct: 294 LQQQAEVRCGD--------------GRTPDAW--ANGRQFDRILLDAPCSATGVIRRHPD 337
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI +L+ +IL +W +LKPGG +++ TCS+ +E+ EQ + F +H D+
Sbjct: 338 IKWLRRDSDIAELAALQREILEAVWPLLKPGGVMVYATCSVLPQENREQILAFLAHHDDA 397
Query: 298 IRLNSPG-------QLLPTVNKKQDYDGFFYS 322
RL G Q LP + + DGFFY+
Sbjct: 398 -RLAETGDAQQPGLQYLP---QSEGGDGFFYA 425
>gi|238783195|ref|ZP_04627221.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
bercovieri ATCC 43970]
gi|238715991|gb|EEQ07977.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
bercovieri ATCC 43970]
Length = 431
Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 117/333 (35%), Positives = 196/333 (58%), Gaps = 26/333 (7%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + N +S + +P W + ++K+ YP+ QW+ ILD ++KP
Sbjct: 117 LINGVLRQFQRQQVELLERAANN--DSRYLHPSWLLARIKLAYPD--QWQQILDANNQKP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + Y +LLK++ ++ P A++L TP ++S +P F G+ ++QD
Sbjct: 173 PMWLRVNRLHHSRSEYLELLKQADIDAAPHDAYPDALRLITPCAVSALPGFELGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LLD ++G +LD C+APGGKT H+LE A +++VD + RL+ + ENL+R
Sbjct: 233 ASAQGCVELLDPQNGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLSRVKENLQR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L A + + D + ++ FDRIL D PC+ +GV+RR+PD
Sbjct: 293 LQLHAVVRVGD----------------GRTPEAWCGDQQFDRILLDAPCSATGVIRRHPD 336
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI +L++ +I+ +W LK GG +++ TCS+ EE+++Q F + H ++
Sbjct: 337 IKWLRRDSDIAELAQLQSEIIEAIWPKLKKGGVMVYATCSILPEENQQQIAAFLQRHSEA 396
Query: 298 IRLNSPGQLLP---TVNKKQDYDGFFYSLFQKR 327
+ + P + +D DGFFY+ KR
Sbjct: 397 ELVETGTTAAPGKQNLPHPEDGDGFFYAKLIKR 429
>gi|269962646|ref|ZP_06176991.1| sun protein [Vibrio harveyi 1DA3]
gi|269832569|gb|EEZ86683.1| sun protein [Vibrio harveyi 1DA3]
Length = 427
Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 118/335 (35%), Positives = 197/335 (58%), Gaps = 30/335 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R + E+ + + N + + +P W + ++ YP QW++I++ ++K
Sbjct: 113 LINAVLRNYQRNQEELDQMAVSN-NAGKYGHPSWLLKLLQEAYPE--QWESIVEANNQKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + T Y LLK +++T A+KL P + K+P F G+ S+QD
Sbjct: 170 PMWLRVNHQHHTRDEYLTLLKNENIDSTPHTQAMDALKLAAPCDVMKLPGFEKGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQL+ L+ + G +LD C+APGGKT H+LE + +++++D + +RL + ENLKR
Sbjct: 230 AAAQLSINYLEPKDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKR 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
LNL+A ++ D N +++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 290 LNLQAKVVCGD----------------ARNPQEWWQGEQFDRILLDAPCSATGVIRRHPD 333
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI L++ +I + +W LKPGG +++ TCS+ +E+ EQ F ++
Sbjct: 334 IKWLRRADDIAALAELQSEIFDAMWTQLKPGGTMVYATCSITPQENVEQVKAFLARTANA 393
Query: 298 IRLNS----PG-QLLPTVNKKQDYDGFFYSLFQKR 327
++S PG Q+LP ++D DGF+Y++ K+
Sbjct: 394 QLVDSDPEQPGRQILPG---EEDMDGFYYAVLTKK 425
>gi|395233956|ref|ZP_10412190.1| 16S rRNA methyltransferase B [Enterobacter sp. Ag1]
gi|394731578|gb|EJF31337.1| 16S rRNA methyltransferase B [Enterobacter sp. Ag1]
Length = 429
Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 120/333 (36%), Positives = 196/333 (58%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + HES + +P W + ++K YP+ W++I+D +++P
Sbjct: 117 LINGVLRQFQRQQENLMAEAAK--HESRFLHPAWLLQRLKKAYPDC--WESIVDANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N++ T ++ LL ++GLE I A++L +P + +P F G+ ++QD
Sbjct: 173 PMWLRVNRQHHTREAWMALLAEAGLEGHIHPKYQDAVRLDSPAPVQALPGFEQGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ + LLD ++G +LD C+APGGKT H+LE A + K+++VD + RL + ENL+R
Sbjct: 233 ASAQGSVDLLDPQNGETILDLCAAPGGKTTHILEAAPNAKVMAVDVDTQRLKRVHENLER 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KA + K+ + RF ++ FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKAEV------------------KQGDGRFPAQWCGETKFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L+ +IL+ +W LK GG L++ TCS+ +E+++Q F H
Sbjct: 335 PDIKWLRRDRDIAELAALQKEILDAIWPHLKTGGTLVYATCSILPDENKDQVSAFLARHA 394
Query: 296 DSIRLN-----SPG-QLLPTVNKKQDYDGFFYS 322
D+ + +PG Q LP + D DGF+Y+
Sbjct: 395 DAKLVETGDNKAPGIQNLPAAD---DGDGFYYA 424
>gi|52426258|ref|YP_089395.1| Sun protein [Mannheimia succiniciproducens MBEL55E]
gi|52308310|gb|AAU38810.1| Sun protein [Mannheimia succiniciproducens MBEL55E]
Length = 470
Score = 221 bits (562), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 132/346 (38%), Positives = 205/346 (59%), Gaps = 42/346 (12%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
++N +LR FLR++ EI + + W +P W++N++K YPN W+ I++ ++
Sbjct: 141 LVNGVLRRFLREQQEILA-----VVDKNWQTLHPEWFVNKLKKAYPN---WREIIEANNQ 192
Query: 59 KPPLTLRINQRKTTLISYNKLL-KKSGLET-TIIGPLAIKLHTPISISKIPKFFNGFCSI 116
KPP+ +R+NQ+ T +Y LL + L++ P A++L P ++ +P F G+ ++
Sbjct: 193 KPPMWIRVNQQLCTTENYRTLLLTEQELDSFKDENPNALRLAQPTAVQNLPHFTEGWVTV 252
Query: 117 QDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENL 175
QD AQ +A LL+ ++G +LDAC+APGGKT H+LE+A K+I++D SRLN ++ENL
Sbjct: 253 QDVHAQWSALLLEAKNGDLILDACAAPGGKTTHILELAPQAKVIALDVEQSRLNRVAENL 312
Query: 176 KRLNLKATLILSDISKIN------LKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGS 229
RLN +A LI D +K + ++L I KKT+ +F DRIL D PC+ +
Sbjct: 313 ARLNQQAVLICGDATKPDDWLPNAAERL---IGKKTDLQF--------DRILLDAPCSAT 361
Query: 230 GVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAII 289
GV+RR+PDI WLR++ DI +L+ +IL LWK LKP G LL+ TCSL +E+ EQ
Sbjct: 362 GVIRRHPDIKWLRQEQDIGQLAALQQQILTALWKKLKPNGILLYATCSLLPQENSEQIRT 421
Query: 290 FSKNHKD--------SIRLNSPG-QLLPTVNKKQDYDGFFYSLFQK 326
F N D + + N G Q +P+ + DGF+Y+ +K
Sbjct: 422 FLANTPDAKLEPLPFATQENEIGKQFIPS---EFSGDGFYYAKLRK 464
>gi|238788880|ref|ZP_04632670.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
frederiksenii ATCC 33641]
gi|238722907|gb|EEQ14557.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
frederiksenii ATCC 33641]
Length = 429
Score = 221 bits (562), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 124/336 (36%), Positives = 202/336 (60%), Gaps = 32/336 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + N +S + +P W + ++K TYP QW+ ILD ++KP
Sbjct: 117 LINGVLRQFQRQQVELLERAANN--DSRYLHPSWLLARIKQTYPA--QWQQILDANNQKP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTI--IGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+++ + Y LLK++ ++ + P A++L TP ++S +P F G+ ++QD
Sbjct: 173 PMWLRVSRLHHSRNEYLDLLKQANIDALPHDVYPDAVRLITPCAVSDLPGFELGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LLD ++G +LD C+APGGKT H+LE A +++VD + RLN + ENL+R
Sbjct: 233 ASAQGCVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKTHVLAVDIDEQRLNRVKENLQR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L A + + D +T + + ++ FDRIL D PC+ +GV+RR+PD
Sbjct: 293 LKLNAVVRVGD--------------GRTPDTW--CGDQQFDRILLDAPCSATGVIRRHPD 336
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI +L+K +I+ +W LK GG +++ TCS+ EE+++Q F + H ++
Sbjct: 337 IKWLRRDSDIAELAKLQSEIIEAIWPKLKKGGVMVYATCSILPEENQQQITAFLQRHDEA 396
Query: 298 IRL-----NSPG-QLLPTVNKKQDYDGFFYSLFQKR 327
+ ++PG Q LP +D DGFFY+ KR
Sbjct: 397 ELVETGTASAPGRQNLP---HPEDGDGFFYAKLIKR 429
>gi|229515917|ref|ZP_04405374.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
TMA 21]
gi|229524946|ref|ZP_04414351.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
bv. albensis VL426]
gi|417818647|ref|ZP_12465269.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HE39]
gi|419834985|ref|ZP_14358435.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-46B1]
gi|421341586|ref|ZP_15791997.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-43B1]
gi|423733324|ref|ZP_17706563.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-41B1]
gi|423941755|ref|ZP_17732988.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HE-40]
gi|423973176|ref|ZP_17736533.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HE-46]
gi|424007625|ref|ZP_17750587.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-44C1]
gi|229338527|gb|EEO03544.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
bv. albensis VL426]
gi|229347017|gb|EEO11979.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
TMA 21]
gi|340044255|gb|EGR05208.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HE39]
gi|395948214|gb|EJH58867.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-43B1]
gi|408632790|gb|EKL05225.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-41B1]
gi|408662688|gb|EKL33600.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HE-40]
gi|408666642|gb|EKL37421.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HE-46]
gi|408859713|gb|EKL99368.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-46B1]
gi|408868375|gb|EKM07711.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-44C1]
Length = 426
Score = 221 bits (562), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 118/335 (35%), Positives = 194/335 (57%), Gaps = 30/335 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R + E ++ + + +P W + +K +YP QW+ I++ + K
Sbjct: 113 LINAVLRNYQRDQ-EGLDAQATSHDAGRYGHPGWLLKLLKESYPE--QWQQIVEANNSKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + T Y LL+++G+ TT A+ L TP + ++P F G+ S+QD
Sbjct: 170 PMWLRVNHQHHTRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQLA L ++G +LD C+APGGKT H+LE + +++++D + +RL + ENL+R
Sbjct: 230 AAAQLALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQR 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L A +I D ++++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 290 LQLTAQVICGDARYPQ----------------QWWQGEQFDRILLDAPCSATGVIRRHPD 333
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI L++ +IL+ +W+ LKPGG L++ TCS+ +E+ Q F + D+
Sbjct: 334 IKWLRRADDIAALAELQREILDAMWQQLKPGGSLVYATCSITPQENRLQVKAFLERTPDA 393
Query: 298 IRLNS----PG-QLLPTVNKKQDYDGFFYSLFQKR 327
+ S PG Q+LP ++ DGF+Y++ K+
Sbjct: 394 RLVGSDPAQPGRQILPG---EEAMDGFYYAVLSKQ 425
>gi|238797213|ref|ZP_04640714.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
mollaretii ATCC 43969]
gi|238718850|gb|EEQ10665.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
mollaretii ATCC 43969]
Length = 431
Score = 221 bits (562), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 118/333 (35%), Positives = 195/333 (58%), Gaps = 26/333 (7%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + N ES + +P W + ++K+ YP+ QW+ ILD ++KP
Sbjct: 117 LINGVLRQFQRQQVELLERAANN--ESRYLHPSWLLARIKLAYPD--QWQQILDANNQKP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTI--IGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T Y +LLK++ ++ + A++L TP ++S +P F G+ ++QD
Sbjct: 173 PMWLRVNRLHHTRSEYLELLKQADIDAVPHDLYSDALRLITPCAVSALPGFELGWATVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LLD +G +LD C+APGGKT H+LE A +++VD + RL+ + ENL+R
Sbjct: 233 ASAQGCVDLLDPHNGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLDRVKENLQR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L A + + D + ++ FDRIL D PC+ +GV+RR+PD
Sbjct: 293 LKLHAVVRVGD----------------GRTPEDWCGDQQFDRILLDAPCSATGVIRRHPD 336
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR DI +L++ +I+ +W LK GG +++ TCS+ EE+++Q F + H ++
Sbjct: 337 IKWLRRDRDIAELAQLQSEIIEAIWPKLKKGGVMVYATCSILPEENQQQIAAFLQRHSEA 396
Query: 298 IRLNSPGQLLP---TVNKKQDYDGFFYSLFQKR 327
+ + +P + +D DGFFY+ KR
Sbjct: 397 ELVETGTTAVPGKQNLPHPEDGDGFFYAKLIKR 429
>gi|222834339|gb|EEE72816.1| predicted protein [Populus trichocarpa]
Length = 359
Score = 221 bits (562), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 120/338 (35%), Positives = 200/338 (59%), Gaps = 33/338 (9%)
Query: 9 FLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPPLTLRINQ 68
FLR++ + + + ++ WN+P WWI +++ +P+ W+ IL +++PP+TLR+N+
Sbjct: 37 FLRER-DALVAATDDQPQAVWNHPAWWIARLRKDHPDH--WQAILQANNEQPPMTLRVNR 93
Query: 69 RKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAAQLAAPL- 127
++T SY L+ + + + ++L + + +P F G S+QDAAAQLAAPL
Sbjct: 94 QQTDRQSYQAALQAMDVPSLAVADSGLQLQQALPVQSLPGFDEGLASVQDAAAQLAAPLL 153
Query: 128 ---LDIRSG--MYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLN 179
L+ +G + VLDAC+APGGKT HLLE A +++ +++ + R I++ L RL
Sbjct: 154 LQGLEQPAGRALRVLDACAAPGGKTAHLLEYAAPQTLEVTALEIDAERAARIADTLGRLR 213
Query: 180 LKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIP 239
L+A ++++D S+ + + D + FD IL D PCT SG+VRR PD+
Sbjct: 214 LQARVVVADASRPDQ---WFDAQ---------CGGQRFDAILLDAPCTASGIVRRQPDVR 261
Query: 240 WLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIR 299
WLRR++D+++L++ ++L+ LW +L+PGG+LL+ TCS++ EE E Q F + ++
Sbjct: 262 WLRRESDVRQLAEIQARLLDTLWPLLQPGGRLLYCTCSVFREEGEAQVQAFVTRNSEART 321
Query: 300 LNSPGQLLP---------TVNKKQDYDGFFYSLFQKRK 328
L +PG L+P N D+DGFFY+L QK +
Sbjct: 322 LAAPGHLIPGKADKAGMLADNALGDHDGFFYALLQKTR 359
>gi|229520215|ref|ZP_04409642.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae TM
11079-80]
gi|421352813|ref|ZP_15803153.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HE-45]
gi|229342809|gb|EEO07800.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae TM
11079-80]
gi|395956961|gb|EJH67550.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HE-45]
Length = 426
Score = 221 bits (562), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 118/335 (35%), Positives = 194/335 (57%), Gaps = 30/335 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R + E ++ + + +P W + +K +YP QW+ I++ + K
Sbjct: 113 LINAVLRNYQRDQ-EGLDAQATSHDAGRYGHPGWLLKLLKESYPE--QWQQIVEANNSKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + T Y LL+++G+ TT A+ L TP + ++P F G+ S+QD
Sbjct: 170 PMWLRVNHQHHTRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQLA L ++G +LD C+APGGKT H+LE + +++++D + +RL + ENL+R
Sbjct: 230 AAAQLALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQR 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L A +I D ++++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 290 LQLTAQVICGDARYPQ----------------QWWQGEQFDRILLDAPCSATGVIRRHPD 333
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI L++ +IL+ +W+ LKPGG L++ TCS+ +E+ Q F + D+
Sbjct: 334 IKWLRRADDIAALAELQREILDAMWQQLKPGGSLVYATCSITPQENRLQVKAFLERTPDA 393
Query: 298 IRLNS----PG-QLLPTVNKKQDYDGFFYSLFQKR 327
+ S PG Q+LP ++ DGF+Y++ K+
Sbjct: 394 RLVGSDPAQPGRQILPG---EEAMDGFYYAVLSKQ 425
>gi|229508329|ref|ZP_04397833.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae BX
330286]
gi|262155855|ref|ZP_06028977.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
INDRE 91/1]
gi|262166898|ref|ZP_06034619.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
RC27]
gi|379739949|ref|YP_005331918.1| 16S rRNA methyltransferase B [Vibrio cholerae IEC224]
gi|421330276|ref|ZP_15780764.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
CP1046(19)]
gi|424584944|ref|ZP_18024555.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
CP1030(3)]
gi|424589318|ref|ZP_18028782.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
CP1037(10)]
gi|424597499|ref|ZP_18036715.1| ribosomal RNA small subunit methyltransferase B [Vibrio Cholerae
CP1044(17)]
gi|424600276|ref|ZP_18039449.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
CP1047(20)]
gi|229354602|gb|EEO19524.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae BX
330286]
gi|262024669|gb|EEY43349.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
RC27]
gi|262030307|gb|EEY48949.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
INDRE 91/1]
gi|378793459|gb|AFC56930.1| 16S rRNA methyltransferase B [Vibrio cholerae IEC224]
gi|395936451|gb|EJH47175.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
CP1046(19)]
gi|395979826|gb|EJH89151.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
CP1030(3)]
gi|395980230|gb|EJH89519.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
CP1047(20)]
gi|408037961|gb|EKG74321.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
CP1037(10)]
gi|408046143|gb|EKG81859.1| ribosomal RNA small subunit methyltransferase B [Vibrio Cholerae
CP1044(17)]
Length = 426
Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 118/335 (35%), Positives = 194/335 (57%), Gaps = 30/335 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R + E ++ + + +P W + +K +YP QW+ I++ + K
Sbjct: 113 LINAVLRNYQRDQ-EGLDAQATSHDAGRYGHPGWLLKLLKESYPE--QWQQIVEANNSKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + T Y LL+++G+ TT A+ L TP + ++P F G+ S+QD
Sbjct: 170 PMWLRVNHQHHTRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQLA L ++G +LD C+APGGKT H+LE + +++++D + +RL + ENL+R
Sbjct: 230 AAAQLALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQR 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L A +I D ++++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 290 LELTAQVICGDARYPQ----------------QWWQGEQFDRILLDAPCSATGVIRRHPD 333
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI L++ +IL+ +W+ LKPGG L++ TCS+ +E+ Q F + D+
Sbjct: 334 IKWLRRADDIAALAELQREILDAMWQQLKPGGSLVYATCSITPQENRLQVKAFLERTPDA 393
Query: 298 IRLNS----PG-QLLPTVNKKQDYDGFFYSLFQKR 327
+ S PG Q+LP ++ DGF+Y++ K+
Sbjct: 394 RLVGSDPAQPGRQILPG---EEAMDGFYYAVLSKQ 425
>gi|229530170|ref|ZP_04419559.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
12129(1)]
gi|384423402|ref|YP_005632760.1| Ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
LMA3984-4]
gi|424657931|ref|ZP_18095205.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HE-16]
gi|229332303|gb|EEN97790.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
12129(1)]
gi|327482955|gb|AEA77362.1| Ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
LMA3984-4]
gi|408057359|gb|EKG92211.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HE-16]
Length = 426
Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 118/335 (35%), Positives = 194/335 (57%), Gaps = 30/335 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R + E ++ + + +P W + +K +YP QW+ I++ + K
Sbjct: 113 LINAVLRNYQRDQ-EGLDAQATSHDAGRYGHPGWLLKLLKESYPE--QWQQIVEANNSKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + T Y LL+++G+ TT A+ L TP + ++P F G+ S+QD
Sbjct: 170 PMWLRVNHQHHTRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQLA L ++G +LD C+APGGKT H+LE + +++++D + +RL + ENL+R
Sbjct: 230 AAAQLALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQR 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L A +I D ++++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 290 LQLTAQVICGDARYPQ----------------QWWQGEQFDRILLDAPCSATGVIRRHPD 333
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI L++ +IL+ +W+ LKPGG L++ TCS+ +E+ Q F + D+
Sbjct: 334 IKWLRRADDIAALAELQREILDAMWQQLKPGGSLVYATCSITPQENRLQVKAFLERTPDA 393
Query: 298 IRLNS----PG-QLLPTVNKKQDYDGFFYSLFQKR 327
+ S PG Q+LP ++ DGF+Y++ K+
Sbjct: 394 RLVGSDPAQPGRQILPG---EEAMDGFYYAVLSKQ 425
>gi|229508832|ref|ZP_04398323.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
B33]
gi|229517103|ref|ZP_04406549.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
RC9]
gi|229606604|ref|YP_002877252.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
MJ-1236]
gi|255746774|ref|ZP_05420720.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholera
CIRS 101]
gi|360036732|ref|YP_004938495.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae O1
str. 2010EL-1786]
gi|417811127|ref|ZP_12457795.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-49A2]
gi|417814880|ref|ZP_12461524.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HCUF01]
gi|418330756|ref|ZP_12941723.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-06A1]
gi|418339218|ref|ZP_12948110.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-23A1]
gi|418342288|ref|ZP_12949109.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-28A1]
gi|418347470|ref|ZP_12952212.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-43A1]
gi|418356611|ref|ZP_12959327.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-61A1]
gi|419824519|ref|ZP_14348032.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
CP1033(6)]
gi|421315277|ref|ZP_15765853.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
CP1032(5)]
gi|421318846|ref|ZP_15769410.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
CP1038(11)]
gi|421322899|ref|ZP_15773434.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
CP1041(14)]
gi|421326351|ref|ZP_15776872.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
CP1042(15)]
gi|421333969|ref|ZP_15784443.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
CP1048(21)]
gi|421337784|ref|ZP_15788228.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-20A2]
gi|421345295|ref|ZP_15795685.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-46A1]
gi|422890072|ref|ZP_16932529.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-40A1]
gi|422900647|ref|ZP_16936278.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-48A1]
gi|422905040|ref|ZP_16939926.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-70A1]
gi|422911789|ref|ZP_16946337.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HFU-02]
gi|422924255|ref|ZP_16957323.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-38A1]
gi|423143320|ref|ZP_17130954.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-19A1]
gi|423148300|ref|ZP_17135677.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-21A1]
gi|423152089|ref|ZP_17139319.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-22A1]
gi|423154880|ref|ZP_17142031.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-32A1]
gi|423158745|ref|ZP_17145731.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-33A2]
gi|423163408|ref|ZP_17150223.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-48B2]
gi|423729411|ref|ZP_17702761.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-17A1]
gi|423888034|ref|ZP_17724978.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-62A1]
gi|423920446|ref|ZP_17729591.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-77A1]
gi|424000591|ref|ZP_17743700.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-17A2]
gi|424004757|ref|ZP_17747760.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-37A1]
gi|424022553|ref|ZP_17762235.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-62B1]
gi|424025573|ref|ZP_17765208.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-69A1]
gi|424593571|ref|ZP_18032929.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
CP1040(13)]
gi|424605175|ref|ZP_18044161.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
CP1050(23)]
gi|424608901|ref|ZP_18047778.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-39A1]
gi|424611807|ref|ZP_18050634.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-41A1]
gi|424615697|ref|ZP_18054407.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-42A1]
gi|424620446|ref|ZP_18058993.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-47A1]
gi|424643264|ref|ZP_18081039.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-56A2]
gi|424651195|ref|ZP_18088736.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-57A2]
gi|424655149|ref|ZP_18092466.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-81A2]
gi|440712031|ref|ZP_20892657.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
4260B]
gi|443502101|ref|ZP_21069110.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-64A1]
gi|443506001|ref|ZP_21072817.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-65A1]
gi|443509838|ref|ZP_21076529.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-67A1]
gi|443513678|ref|ZP_21080240.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-68A1]
gi|443517486|ref|ZP_21083929.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-71A1]
gi|443522073|ref|ZP_21088340.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-72A2]
gi|443529007|ref|ZP_21095030.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-7A1]
gi|443533745|ref|ZP_21099685.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-80A1]
gi|443536569|ref|ZP_21102429.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-81A1]
gi|449054720|ref|ZP_21733388.1| Ribosomal RNA small subunit methyltransferase B [Vibrio cholerae O1
str. Inaba G4222]
gi|229346166|gb|EEO11138.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
RC9]
gi|229354107|gb|EEO19039.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
B33]
gi|229369259|gb|ACQ59682.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
MJ-1236]
gi|255735531|gb|EET90930.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholera
CIRS 101]
gi|340046052|gb|EGR06987.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HCUF01]
gi|340046237|gb|EGR07168.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-49A2]
gi|341627248|gb|EGS52572.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-70A1]
gi|341628587|gb|EGS53815.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-48A1]
gi|341628789|gb|EGS53983.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-40A1]
gi|341642063|gb|EGS66551.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HFU-02]
gi|341649320|gb|EGS73299.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-38A1]
gi|356423390|gb|EHH76842.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-06A1]
gi|356424045|gb|EHH77467.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-21A1]
gi|356428086|gb|EHH81316.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-19A1]
gi|356428771|gb|EHH81992.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-23A1]
gi|356436238|gb|EHH89358.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-22A1]
gi|356439187|gb|EHH92176.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-28A1]
gi|356446909|gb|EHH99700.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-32A1]
gi|356448902|gb|EHI01663.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-43A1]
gi|356450783|gb|EHI03493.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-61A1]
gi|356451472|gb|EHI04157.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-33A2]
gi|356456922|gb|EHI09499.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-48B2]
gi|356647886|gb|AET27941.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae O1
str. 2010EL-1786]
gi|395924241|gb|EJH35047.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
CP1032(5)]
gi|395925483|gb|EJH36281.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
CP1041(14)]
gi|395926599|gb|EJH37377.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
CP1038(11)]
gi|395936075|gb|EJH46805.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
CP1042(15)]
gi|395938332|gb|EJH49026.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
CP1048(21)]
gi|395948322|gb|EJH58973.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-20A2]
gi|395948905|gb|EJH59540.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-46A1]
gi|395965512|gb|EJH75681.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-56A2]
gi|395965661|gb|EJH75824.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-57A2]
gi|395967968|gb|EJH77992.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-42A1]
gi|395977467|gb|EJH86876.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-47A1]
gi|408011527|gb|EKG49337.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-39A1]
gi|408018597|gb|EKG56035.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-41A1]
gi|408038951|gb|EKG75264.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
CP1040(13)]
gi|408047914|gb|EKG83411.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
CP1050(23)]
gi|408058398|gb|EKG93201.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-81A2]
gi|408613049|gb|EKK86380.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
CP1033(6)]
gi|408629221|gb|EKL01930.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-17A1]
gi|408661013|gb|EKL32009.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-77A1]
gi|408661695|gb|EKL32678.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-62A1]
gi|408850349|gb|EKL90314.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-37A1]
gi|408850958|gb|EKL90899.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-17A2]
gi|408876609|gb|EKM15722.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-62B1]
gi|408882470|gb|EKM21289.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-69A1]
gi|439972276|gb|ELP48571.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
4260B]
gi|443433584|gb|ELS76085.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-64A1]
gi|443437414|gb|ELS83505.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-65A1]
gi|443441253|gb|ELS90915.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-67A1]
gi|443445069|gb|ELS98320.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-68A1]
gi|443448903|gb|ELT05512.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-71A1]
gi|443451966|gb|ELT12203.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-72A2]
gi|443460270|gb|ELT27658.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-7A1]
gi|443463093|gb|ELT34104.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-80A1]
gi|443467816|gb|ELT42470.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-81A1]
gi|448265866|gb|EMB03099.1| Ribosomal RNA small subunit methyltransferase B [Vibrio cholerae O1
str. Inaba G4222]
Length = 426
Score = 220 bits (561), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 118/335 (35%), Positives = 194/335 (57%), Gaps = 30/335 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R + E ++ + + +P W + +K +YP QW+ I++ + K
Sbjct: 113 LINAVLRNYQRDQ-EGLDAQATSHDAGRYGHPGWLLKLLKESYPE--QWQQIVEANNSKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + T Y LL+++G+ TT A+ L TP + ++P F G+ S+QD
Sbjct: 170 PMWLRVNHQHHTRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQLA L ++G +LD C+APGGKT H+LE + +++++D + +RL + ENL+R
Sbjct: 230 AAAQLALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQR 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L A +I D ++++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 290 LELTAQVICGDARYPQ----------------QWWQGEQFDRILLDAPCSATGVIRRHPD 333
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI L++ +IL+ +W+ LKPGG L++ TCS+ +E+ Q F + D+
Sbjct: 334 IKWLRRADDIAALAELQREILDAMWQQLKPGGSLVYATCSITPQENRLQVKAFLERTPDA 393
Query: 298 IRLNS----PG-QLLPTVNKKQDYDGFFYSLFQKR 327
+ S PG Q+LP ++ DGF+Y++ K+
Sbjct: 394 RLVGSEPAQPGRQILPG---EEAMDGFYYAVLSKQ 425
>gi|352106585|ref|ZP_08961528.1| Sun protein [Halomonas sp. HAL1]
gi|350597628|gb|EHA13756.1| Sun protein [Halomonas sp. HAL1]
Length = 445
Score = 220 bits (561), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 123/342 (35%), Positives = 190/342 (55%), Gaps = 36/342 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++N LR L+++ E ++++ +P W +N ++ +P QW+ I++ +
Sbjct: 123 VLNGCLRR-LQRESEALQAQVDRDESVALEHPPWLLNALRQAWPE--QWRAIIEANNHAG 179
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTII--GPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+TLR+NQ +Y LL + GL + P AI L TP + +P F G S+QD
Sbjct: 180 PMTLRVNQHHNDREAYLSLLTEQGLSGHLCPHAPDAITLETPCDVMSLPGFEEGHVSVQD 239
Query: 119 AAAQLAA----PLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISEN 174
AAQL+A P+L R G +VLDAC APGGKT HLLE DI L ++D++ RL + +
Sbjct: 240 EAAQLSAVLLGPVLAPRPGAHVLDACCAPGGKTAHLLEQFDINLTAIDSDNQRLARVEDT 299
Query: 175 LKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRR 234
L RL ++A L +D ++ + ++ FD IL D PC+G+GV+RR
Sbjct: 300 LNRLGVEAVLQHADATERD-----------------WWSGTPFDAILLDAPCSGTGVIRR 342
Query: 235 NPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH 294
+PDI LRRK+DI+ L+K ++L+NLW ML+ GG LL+ TCS+ EE+ EQ F
Sbjct: 343 HPDIKKLRRKDDIRPLAKLQRQLLDNLWSMLREGGTLLYATCSVLPEENSEQIEAFLART 402
Query: 295 KDSIRLNSPGQL---LPTVNKKQ------DYDGFFYSLFQKR 327
D+ + +P + +P+ +Q +DGFFY+ +KR
Sbjct: 403 PDA-HVTTPNDVAWGIPSGAGRQLFPAQSSHDGFFYARLEKR 443
>gi|344943063|ref|ZP_08782350.1| sun protein [Methylobacter tundripaludum SV96]
gi|344260350|gb|EGW20622.1| sun protein [Methylobacter tundripaludum SV96]
Length = 435
Score = 220 bits (561), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 128/345 (37%), Positives = 189/345 (54%), Gaps = 37/345 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR +LR++ E + K + ++P W I Q++ +P Q NI +++P
Sbjct: 110 LINAVLRTYLREQ-EGLEHKADKCQVAALSHPDWLIKQIEQDWPE--QALNIFLENNQQP 166
Query: 61 PLTLRINQRKTTLISYNKLLKKSGL--ETTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N KT+ Y +LL + E AI+L P+ + +P F +G S+QD
Sbjct: 167 PMVLRVNLSKTSREDYLQLLAGQDIAAEPVSFCRSAIRLDKPVPVDLLPGFSDGLVSVQD 226
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADI--KLISVDNNLSRLNMISENLK 176
AAQLAA LLD+R G VLD C+APGGKT H+LE +L++VD + SR+ +SENL+
Sbjct: 227 TAAQLAAGLLDVRPGHRVLDVCAAPGGKTAHILESQQQLKELVAVDIDESRMQRVSENLQ 286
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RLNL ATL++ D + N ++ K FDRIL D PC+ GV+RR+P
Sbjct: 287 RLNLHATLVVGDAA----------------NPASWWDGKPFDRILLDAPCSALGVIRRHP 330
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI LRR DI +L IL +W +L PGG +L+ TCS+ +E+E+Q F H D
Sbjct: 331 DIKLLRRAEDIGQLQALQKNILQAVWPLLAPGGLMLYATCSILKQENEQQVQAFLAEHSD 390
Query: 297 SIRL-----NSPGQLLPTVN---------KKQDYDGFFYSLFQKR 327
++ L +S G +N + DGF+Y+ K+
Sbjct: 391 AVELPLFSDSSLGTTAWGINGACGRQILTGESAMDGFYYACISKQ 435
>gi|440285901|ref|YP_007338666.1| 16S rRNA m(5)C-967 methyltransferase [Enterobacteriaceae bacterium
strain FGI 57]
gi|440045423|gb|AGB76481.1| 16S rRNA m(5)C-967 methyltransferase [Enterobacteriaceae bacterium
strain FGI 57]
Length = 429
Score = 220 bits (561), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 122/333 (36%), Positives = 192/333 (57%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + E + +P W + ++K YP QW+ IL+ +++P
Sbjct: 117 LINGVLRQFQRQQDELLAE--FAQTEVRYLHPSWLVKRIKKAYPQ--QWEAILEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T ++ LL ++GL P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRNHHTRDAWLALLTEAGLTGFPHADYPDAVRLETPAPVHALPGFDEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L +G +LD C+APGGKT H+LE+A + +++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTYLQPENGEQILDLCAAPGGKTTHILEVAPEANVMAVDVDEKRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + RF ++ + FDRIL D PC+ +GVVRR+
Sbjct: 293 LGMKATV------------------KQGDGRFPEQWCGEQQFDRILLDAPCSATGVVRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +ILN W LKPGG L++ TCS+ EE+ EQ F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQAEILNATWAHLKPGGTLVYATCSILPEENSEQIAAFLQRTP 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D++ + PG Q LP ++ DGFFY+
Sbjct: 395 DAVLSETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|271502215|ref|YP_003335241.1| sun protein [Dickeya dadantii Ech586]
gi|270345770|gb|ACZ78535.1| sun protein [Dickeya dadantii Ech586]
Length = 431
Score = 220 bits (561), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 123/331 (37%), Positives = 194/331 (58%), Gaps = 32/331 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E + ++ N + + +++P W + ++K YP QW+ I+D ++ P
Sbjct: 117 LINGVLRQFQREQ-EALQQRLQN-NPARYSHPDWLLQRLKKAYPG--QWEQIIDANNQHP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R T +Y LL++ G+E P AI+L TP +++ +P F GF ++QD
Sbjct: 173 PMWLRVNRRHHTREAYLALLQEKGIEAHPHAHYPDAIRLSTPCAVNVLPGFEKGFVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L + +LD C+APGGKT H+LE A ++++VD + RL + ENL+R
Sbjct: 233 ASAQGCIHWLSPQDHEDILDLCAAPGGKTTHILEAAPHARVLAVDVDEQRLKRVRENLQR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
LNL A + D ++ +K FDRIL D PC+ +GV+RR+PD
Sbjct: 293 LNLHAEVKCGD----------------GRTPTQWCGDKCFDRILLDAPCSATGVIRRHPD 336
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI +L+ IL +W LK GG L++ TCS+ EE+ +Q F + H D+
Sbjct: 337 IKWLRRDSDIAELASLQNTILEAIWPRLKNGGTLVYATCSVLPEENCQQIADFLQRHADA 396
Query: 298 IRLN-----SPG-QLLPTVNKKQDYDGFFYS 322
+ ++ SPG Q+LP +D DGFFY+
Sbjct: 397 MLVDTGTPASPGIQMLPAA---EDGDGFFYA 424
>gi|149910330|ref|ZP_01898973.1| Putative Sun protein [Moritella sp. PE36]
gi|149806578|gb|EDM66546.1| Putative Sun protein [Moritella sp. PE36]
Length = 431
Score = 220 bits (561), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 126/340 (37%), Positives = 185/340 (54%), Gaps = 35/340 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NAILR + R++ ++ N + +P W I ++K YP QW+++L +++P
Sbjct: 113 LVNAILRNYQRQQDDLETLADGN-DACKFGHPGWLIKRIKAAYPK--QWQDVLMANNERP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ +R+NQ+ Y LL + I+ A++L P + K+ F G S+QD
Sbjct: 170 PMWIRVNQQHHNQADYQALLAADEIVAEIVDSADSALRLAKPTDVYKLAGFAEGHSSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE--IADIKLISVDNNLSRLNMISENLK 176
AAQ AA LD + G VLDAC+APGGKT H+LE A L++VD + +RL+ + ENL
Sbjct: 230 GAAQFAAQFLDAQPGELVLDACAAPGGKTAHILERQPALKHLVAVDFDATRLSRVQENLT 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
R+ L A LI D SK +++ FDRIL D PC+ +GV+RR+P
Sbjct: 290 RMQLDAELIHGDASKPE----------------DWWQGDKFDRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLRR +DI L + +IL+ +W LKPGG LL+ TCS+ E+ EQ F D
Sbjct: 334 DIKWLRRDSDIAPLVQLQAEILDAMWLQLKPGGTLLYATCSILPAENSEQISSFVARTPD 393
Query: 297 S--IRLNSPG-------QLLPTVNKKQDYDGFFYSLFQKR 327
+ + LN+ Q+LP Q DGFFY+ QK+
Sbjct: 394 AVLVPLNADSNDQAFSWQILPNT---QGMDGFFYAKLQKK 430
>gi|238792967|ref|ZP_04636597.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
intermedia ATCC 29909]
gi|238727821|gb|EEQ19345.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
intermedia ATCC 29909]
Length = 429
Score = 220 bits (561), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 119/333 (35%), Positives = 194/333 (58%), Gaps = 26/333 (7%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + N +S + +P W + ++K YP+ QW+ I+D ++KP
Sbjct: 117 LINGVLRQFQRQQVELLERAANN--DSRYLHPSWLLARIKQAYPD--QWQQIVDANNQKP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGL--ETTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+++ T Y LLK++G+ E P A++L TP ++S +P F G+ ++QD
Sbjct: 173 PMWLRVSRLHHTRGEYLDLLKEAGIDAEPHAYYPDAVRLITPCAVSDLPGFELGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LLD ++G +LD C+APGGKT H+LE A +++VD + RL+ ++ENL+R
Sbjct: 233 ASAQGCVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLSRVNENLQR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L A + + D + ++ FDRIL D PC+ +GV+RR+PD
Sbjct: 293 LKLHAVVRVGD----------------GRTPETWCGDQQFDRILLDAPCSATGVIRRHPD 336
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI L+ +I+ +W LK GG +++ TCS+ EE+++Q F + H D+
Sbjct: 337 IKWLRRDSDIADLAALQSEIIEAIWPRLKKGGVMVYATCSILPEENQQQIAAFLQRHSDA 396
Query: 298 IRLNSPGQLLP---TVNKKQDYDGFFYSLFQKR 327
+ + P + +D DGFFY+ KR
Sbjct: 397 ELVETGTNTAPGKQNLPHPEDGDGFFYAKLFKR 429
>gi|343511700|ref|ZP_08748855.1| ribosomal RNA small subunit methyltransferase B [Vibrio scophthalmi
LMG 19158]
gi|342797435|gb|EGU33085.1| ribosomal RNA small subunit methyltransferase B [Vibrio scophthalmi
LMG 19158]
Length = 426
Score = 220 bits (560), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 118/337 (35%), Positives = 197/337 (58%), Gaps = 34/337 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR +LR + E+ + + + + +P W + ++ YP QW+NI++ + K
Sbjct: 113 LINAVLRNYLRNQEEL-DAIAVSHNAGKYGHPSWLLKLLQEHYPQ--QWENIVEANNSKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKS--GLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N++ T Y L++++ G AIKL +P ++ +P F G+ S+QD
Sbjct: 170 PMWLRVNRQHHTRDEYLALMQEAEIGCSVHAYAADAIKLDSPCDVTLLPGFDKGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQL+ L + G +LD C+APGGKT H+LE D +++++D++ +RLN + +NL+R
Sbjct: 230 AAAQLSVDYLTPKDGELILDCCAAPGGKTAHILEHTVDTEVVAIDSDATRLNRVYDNLER 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L L+A +I D R+ +++ + FDRIL D PC+ +GV+RR+
Sbjct: 290 LQLRADVICGDA------------------RYPQEWWQGEQFDRILLDAPCSATGVIRRH 331
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIF----S 291
PDI WLRR NDI+ L+ +IL+ +W+ LK GG L++ TCS+ +E++ Q F +
Sbjct: 332 PDIKWLRRANDIEALAALQSEILDAMWQQLKVGGTLVYATCSITPQENKNQVKAFLARTA 391
Query: 292 KNHKDSIRLNSPG-QLLPTVNKKQDYDGFFYSLFQKR 327
+ +PG Q+LP ++D DGF+Y++ KR
Sbjct: 392 NAELQGSDIENPGRQILP---GEEDMDGFYYAVMTKR 425
>gi|153830135|ref|ZP_01982802.1| sun protein [Vibrio cholerae 623-39]
gi|254225568|ref|ZP_04919177.1| sun protein [Vibrio cholerae V51]
gi|254291095|ref|ZP_04961892.1| sun protein [Vibrio cholerae AM-19226]
gi|125621888|gb|EAZ50213.1| sun protein [Vibrio cholerae V51]
gi|148874399|gb|EDL72534.1| sun protein [Vibrio cholerae 623-39]
gi|150422940|gb|EDN14890.1| sun protein [Vibrio cholerae AM-19226]
Length = 434
Score = 220 bits (560), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 118/335 (35%), Positives = 194/335 (57%), Gaps = 30/335 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R + E ++ + + +P W + +K +YP QW+ I++ + K
Sbjct: 121 LINAVLRNYQRDQ-EGLDAQATSHDAGRYGHPGWLLKLLKESYPE--QWQQIVEANNSKA 177
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + T Y LL+++G+ TT A+ L TP + ++P F G+ S+QD
Sbjct: 178 PMWLRVNHQHHTRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQD 237
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQLA L ++G +LD C+APGGKT H+LE + +++++D + +RL + ENL+R
Sbjct: 238 AAAQLALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQR 297
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L A +I D ++++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 298 LQLTAQVICGDARYPQ----------------QWWQGEQFDRILLDAPCSATGVIRRHPD 341
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI L++ +IL+ +W+ LKPGG L++ TCS+ +E+ Q F + D+
Sbjct: 342 IKWLRRADDIAALAELQREILDAMWQQLKPGGSLVYATCSITPQENRLQVKAFLERTPDA 401
Query: 298 IRLNS----PG-QLLPTVNKKQDYDGFFYSLFQKR 327
+ S PG Q+LP ++ DGF+Y++ K+
Sbjct: 402 RLVGSDPAQPGRQILPG---EEAMDGFYYAVLSKQ 433
>gi|153802771|ref|ZP_01957357.1| sun protein [Vibrio cholerae MZO-3]
gi|124121684|gb|EAY40427.1| sun protein [Vibrio cholerae MZO-3]
Length = 434
Score = 220 bits (560), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 118/335 (35%), Positives = 194/335 (57%), Gaps = 30/335 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R + E ++ + + +P W + +K +YP QW+ I++ + K
Sbjct: 121 LINAVLRNYQRDQ-EGLDAQATSHDAGRYGHPGWLLKLLKESYPE--QWQQIVEANNSKA 177
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + T Y LL+++G+ TT A+ L TP + ++P F G+ S+QD
Sbjct: 178 PMWLRVNHQHHTRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQD 237
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQLA L ++G +LD C+APGGKT H+LE + +++++D + +RL + ENL+R
Sbjct: 238 AAAQLALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQR 297
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L A +I D ++++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 298 LQLTAQVICGDARYPQ----------------QWWQGEQFDRILLDAPCSATGVIRRHPD 341
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI L++ +IL+ +W+ LKPGG L++ TCS+ +E+ Q F + D+
Sbjct: 342 IKWLRRADDIAALAELQREILDAMWQQLKPGGSLVYATCSITPQENRLQVKAFLERTPDA 401
Query: 298 IRLNS----PG-QLLPTVNKKQDYDGFFYSLFQKR 327
+ S PG Q+LP ++ DGF+Y++ K+
Sbjct: 402 RLVGSDPAQPGRQILPG---EEAMDGFYYAVLSKQ 433
>gi|345429248|ref|YP_004822366.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Haemophilus
parainfluenzae T3T1]
gi|301155309|emb|CBW14775.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Haemophilus
parainfluenzae T3T1]
Length = 445
Score = 220 bits (560), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 124/340 (36%), Positives = 197/340 (57%), Gaps = 35/340 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
++N +LR FLR++ +I + + +W +P W++N++K YPN W+ I++ ++
Sbjct: 126 LVNGVLRRFLREQEDILA-----VVDKHWQTLHPEWFVNKLKKAYPN---WREIIEANNQ 177
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLET-TIIGPLAIKLHTPISISKIPKFFNGFCSIQ 117
KPP+ LR+NQ++ +Y+ LL++ + P A++L P+S+SK+P F G ++Q
Sbjct: 178 KPPMWLRVNQQQNNTKTYSTLLEEQEIAAFECDNPHALRLAQPLSVSKLPNFEQGAVTVQ 237
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
D AQ +A LL+ ++G +LDAC+APGGKT H+LE+A K+I++D RL + ENL
Sbjct: 238 DLNAQWSALLLEPQNGELILDACAAPGGKTTHILEMAPQAKVIALDVEAHRLKRVEENLT 297
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RLN +AT++ D ++ I +N + FDRIL D PC+ +GV+RR+P
Sbjct: 298 RLNQQATVVCGDATEPEKWLSEIGLNGAS-----------FDRILLDAPCSATGVIRRHP 346
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR++ DI +L +IL LW LKP G LL+ TCS+ +E+ +Q D
Sbjct: 347 DIKWLRQETDIAQLVALQGQILKALWAKLKPNGILLYATCSVLPDENSQQIQHLLAETSD 406
Query: 297 SIRL--------NSPG-QLLPTVNKKQDYDGFFYSLFQKR 327
+ + N+ G Q LP N DGF+Y+ +KR
Sbjct: 407 AELMPLPFEQTENTIGIQFLPQENGG---DGFYYAKLRKR 443
>gi|153821915|ref|ZP_01974582.1| sun protein [Vibrio cholerae B33]
gi|254851609|ref|ZP_05240959.1| sun protein [Vibrio cholerae MO10]
gi|126520535|gb|EAZ77758.1| sun protein [Vibrio cholerae B33]
gi|254847314|gb|EET25728.1| sun protein [Vibrio cholerae MO10]
Length = 434
Score = 220 bits (560), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 118/335 (35%), Positives = 194/335 (57%), Gaps = 30/335 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R + E ++ + + +P W + +K +YP QW+ I++ + K
Sbjct: 121 LINAVLRNYQRDQ-EGLDAQATSHDAGRYGHPGWLLKLLKESYPE--QWQQIVEANNSKA 177
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + T Y LL+++G+ TT A+ L TP + ++P F G+ S+QD
Sbjct: 178 PMWLRVNHQHHTRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQD 237
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQLA L ++G +LD C+APGGKT H+LE + +++++D + +RL + ENL+R
Sbjct: 238 AAAQLALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQR 297
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L A +I D ++++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 298 LELTAQVICGDARYPQ----------------QWWQGEQFDRILLDAPCSATGVIRRHPD 341
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI L++ +IL+ +W+ LKPGG L++ TCS+ +E+ Q F + D+
Sbjct: 342 IKWLRRADDIAALAELQREILDAMWQQLKPGGSLVYATCSITPQENRLQVKAFLERTPDA 401
Query: 298 IRLNS----PG-QLLPTVNKKQDYDGFFYSLFQKR 327
+ S PG Q+LP ++ DGF+Y++ K+
Sbjct: 402 RLVGSEPAQPGRQILPG---EEAMDGFYYAVLSKQ 433
>gi|15640076|ref|NP_229703.1| sun protein [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|121587275|ref|ZP_01677048.1| sun protein [Vibrio cholerae 2740-80]
gi|121727862|ref|ZP_01680921.1| sun protein [Vibrio cholerae V52]
gi|147675284|ref|YP_001218368.1| sun protein [Vibrio cholerae O395]
gi|153817606|ref|ZP_01970273.1| sun protein [Vibrio cholerae NCTC 8457]
gi|227080281|ref|YP_002808832.1| sun protein [Vibrio cholerae M66-2]
gi|227116503|ref|YP_002818399.1| sun protein [Vibrio cholerae O395]
gi|298501227|ref|ZP_07011026.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
MAK 757]
gi|46397040|sp|Q9KVU5.1|RSMB_VIBCH RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|9654437|gb|AAF93222.1| sun protein [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|121548521|gb|EAX58577.1| sun protein [Vibrio cholerae 2740-80]
gi|121629806|gb|EAX62221.1| sun protein [Vibrio cholerae V52]
gi|126511874|gb|EAZ74468.1| sun protein [Vibrio cholerae NCTC 8457]
gi|146317167|gb|ABQ21706.1| sun protein [Vibrio cholerae O395]
gi|227008169|gb|ACP04381.1| sun protein [Vibrio cholerae M66-2]
gi|227011953|gb|ACP08163.1| sun protein [Vibrio cholerae O395]
gi|297540099|gb|EFH76161.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
MAK 757]
Length = 434
Score = 220 bits (560), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 118/335 (35%), Positives = 194/335 (57%), Gaps = 30/335 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R + E ++ + + +P W + +K +YP QW+ I++ + K
Sbjct: 121 LINAVLRNYQRDQ-EGLDAQATSHDAGRYGHPGWLLKLLKESYPE--QWQQIVEANNSKA 177
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + T Y LL+++G+ TT A+ L TP + ++P F G+ S+QD
Sbjct: 178 PMWLRVNHQHHTRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQD 237
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQLA L ++G +LD C+APGGKT H+LE + +++++D + +RL + ENL+R
Sbjct: 238 AAAQLALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQR 297
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L A +I D ++++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 298 LELTAQVICGDARYPQ----------------QWWQGEQFDRILLDAPCSATGVIRRHPD 341
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI L++ +IL+ +W+ LKPGG L++ TCS+ +E+ Q F + D+
Sbjct: 342 IKWLRRADDIAALAELQREILDAMWQQLKPGGSLVYATCSITPQENRLQVKAFLERTPDA 401
Query: 298 IRLNS----PG-QLLPTVNKKQDYDGFFYSLFQKR 327
+ S PG Q+LP ++ DGF+Y++ K+
Sbjct: 402 RLVGSDPAQPGRQILPG---EEAMDGFYYAVLSKQ 433
>gi|167621966|ref|YP_001672260.1| sun protein [Shewanella halifaxensis HAW-EB4]
gi|167351988|gb|ABZ74601.1| sun protein [Shewanella halifaxensis HAW-EB4]
Length = 426
Score = 220 bits (560), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 120/330 (36%), Positives = 189/330 (57%), Gaps = 30/330 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++N +LR R++ K + +N P W I +++ YP+ W+ +++ H++P
Sbjct: 114 VVNGVLRNIQRQE----KPLSTDNDTLAYNTPAWIIKRLQAAYPD--NWQTVIEQSHERP 167
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTII-GPLAIKLHTPISISKIPKFFNGFCSIQDA 119
P+ LR NQ+ T +Y + L +E P +I L +P + ++P F +G S+QD
Sbjct: 168 PMWLRNNQQSQTRETYLQALAGLDIEAQAGNSPDSILLSSPRDVMQLPGFESGAASVQDG 227
Query: 120 AAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKRL 178
AAQ AA LL + VLDAC+APGGK+CHLLE+A DIKL++VD + RL + +NL RL
Sbjct: 228 AAQWAATLLAPQGDELVLDACAAPGGKSCHLLELAPDIKLVAVDFDAKRLERVQQNLDRL 287
Query: 179 NLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDI 238
+LKA L+ D + I+ +++ FDRIL D PC+ +GV+RR+PDI
Sbjct: 288 SLKAELVHGDAANID----------------SWWQGDKFDRILLDAPCSATGVIRRHPDI 331
Query: 239 PWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSI 298
WLR+ NDI++L++ +I ++ WK LKPGG LL+ TCS+ +E+++Q F D+
Sbjct: 332 KWLRKNNDIEELAQLQSQIFDHCWKWLKPGGTLLYATCSILPQENKDQVSAFLARTPDAT 391
Query: 299 RLNSPGQLLPT------VNKKQDYDGFFYS 322
+ Q P V + + DGF+Y+
Sbjct: 392 LVPIEQQANPDDIGWQIVPGQDNMDGFYYA 421
>gi|333929434|ref|YP_004503013.1| ribosomal RNA small subunit methyltransferase B [Serratia sp. AS12]
gi|333934387|ref|YP_004507965.1| ribosomal RNA small subunit methyltransferase B [Serratia
plymuthica AS9]
gi|386331257|ref|YP_006027427.1| Ribosomal RNA small subunit methyltransferase B [Serratia sp. AS13]
gi|333475994|gb|AEF47704.1| Ribosomal RNA small subunit methyltransferase B [Serratia
plymuthica AS9]
gi|333493494|gb|AEF52656.1| Ribosomal RNA small subunit methyltransferase B [Serratia sp. AS12]
gi|333963590|gb|AEG30363.1| Ribosomal RNA small subunit methyltransferase B [Serratia sp. AS13]
Length = 429
Score = 220 bits (560), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 114/328 (34%), Positives = 190/328 (57%), Gaps = 26/328 (7%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + N +S + +P W + +++ YP QW+ I+D ++KP
Sbjct: 117 LINGVLRQFQRQQEELLQRAANN--DSRYLHPSWLLKRIQQAYPA--QWEQIIDANNQKP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T Y +L++++G+ A++L P +++ +P F +G+ ++QD
Sbjct: 173 PMWLRVNRLHHTREDYLRLMEQAGIAAEPHAEYRDALRLLVPCAVTDLPGFADGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LLD + G +LD C+APGGKT H+LE A +++VD + RL + ENL+R
Sbjct: 233 ASAQGCVDLLDPQDGEQILDLCAAPGGKTTHILEAAPKAHVMAVDIDEQRLGRVKENLQR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L A + L D ++ +K FDRIL D PC+ +GV+RR+PD
Sbjct: 293 LRLHAEVKLGD----------------GRTPQQWCGDKQFDRILLDAPCSATGVIRRHPD 336
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI +L+K +I++ +W LK GG +++ TCS+ E+ EQ F + H D+
Sbjct: 337 IKWLRRDSDIAELAKLQAEIIDAIWPHLKSGGVMVYATCSILPTENAEQVTAFLQRHPDA 396
Query: 298 IRLNSPGQLLP---TVNKKQDYDGFFYS 322
+ + + P + +D DGFFY+
Sbjct: 397 RLVETGNEQQPGRQNLPHPEDGDGFFYA 424
>gi|212554448|gb|ACJ26902.1| Fmu, rRNA SAM-dependent methyltransferase [Shewanella piezotolerans
WP3]
Length = 428
Score = 219 bits (559), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 122/330 (36%), Positives = 185/330 (56%), Gaps = 30/330 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++N +LR R++ K + +N P W I ++K YP W+ +++ H++P
Sbjct: 116 VVNGVLRTIQRQE----KPLSTDNDTLAYNTPAWIIKRLKEAYPE--NWQQVIEQSHQRP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTII-GPLAIKLHTPISISKIPKFFNGFCSIQDA 119
P+ LR NQ+ + +Y + L +E P +I L +P + ++P F G S+QD
Sbjct: 170 PMWLRNNQQSQSRETYLQALAGLDIEAEAGNSPDSILLSSPRDVMQLPGFETGAASVQDG 229
Query: 120 AAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKRL 178
AAQ AA LL + VLDAC+APGGKTCHLLE+A DIKL++VD + RL + +NL RL
Sbjct: 230 AAQWAATLLAPQGDELVLDACAAPGGKTCHLLELAPDIKLVAVDFDAKRLERVQQNLDRL 289
Query: 179 NLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDI 238
+L+A LI D + I+ +++ FDRIL D PC+ +GV+RR+PDI
Sbjct: 290 SLEAELIHGDAADID----------------SWWQGDKFDRILLDAPCSATGVIRRHPDI 333
Query: 239 PWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSI 298
WLR+ NDI++L+ KI ++ WK LKPGG LL+ TCS+ +E+ +Q F D+
Sbjct: 334 KWLRKNNDIEELAALQSKIFDHCWKWLKPGGTLLYATCSILPQENRDQVSAFLARTADAT 393
Query: 299 RLNSPGQLLPT------VNKKQDYDGFFYS 322
+ Q P V + + DGF+Y+
Sbjct: 394 LMPIEEQTNPQDTGWQIVPGQDNMDGFYYA 423
>gi|86147131|ref|ZP_01065447.1| Sun protein [Vibrio sp. MED222]
gi|218711000|ref|YP_002418621.1| ribosomal RNA small subunit methyltransferase B [Vibrio splendidus
LGP32]
gi|85835015|gb|EAQ53157.1| Sun protein [Vibrio sp. MED222]
gi|218324019|emb|CAV20381.1| Ribosomal RNA small subunit methyltransferase B [Vibrio splendidus
LGP32]
Length = 426
Score = 219 bits (559), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 117/337 (34%), Positives = 201/337 (59%), Gaps = 34/337 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR +LR + E+ K + + +++P W + ++ +YP+ QW+ +++ + K
Sbjct: 113 LINAVLRSYLRDQEEL-DEKAVSHNAGKYSHPSWILKMLQESYPD--QWEQLVEANNSKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTII--GPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N++ T Y +LLK +E T+ AIKL +P ++ +P F G+ S+QD
Sbjct: 170 PMWLRVNRQHHTRDEYVELLKNENIEYTLHPEAADAIKLASPCDVTLLPGFDRGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQL+ L + G +LD C+APGGKT H+LE D +++++D+++ RL+ + +NL+R
Sbjct: 230 AAAQLSVDFLTPKDGELILDCCAAPGGKTAHILEHTQDTEVVAIDSDIKRLDRVYDNLER 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L L+A +I D R+ ++ FDRIL D PC+ +GV+RR+
Sbjct: 290 LQLRADVICGDA------------------RYPEEWWTGSQFDRILLDAPCSATGVIRRH 331
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR +DI L++ +IL+ +W+ LK GG +++ TCS+ +E+ Q F + +
Sbjct: 332 PDIKWLRRASDIDALAELQSEILDAMWRQLKEGGTMVYATCSITPQENVLQVKAFLERTE 391
Query: 296 DSIRLNS----PG-QLLPTVNKKQDYDGFFYSLFQKR 327
++ + S PG Q+LP ++D DGF+Y++ K+
Sbjct: 392 NATLVGSDIEKPGRQILP---GEEDMDGFYYAVLVKQ 425
>gi|429117065|ref|ZP_19177983.1| Ribosomal RNA small subunit methyltransferase B [Cronobacter
sakazakii 701]
gi|426320194|emb|CCK04096.1| Ribosomal RNA small subunit methyltransferase B [Cronobacter
sakazakii 701]
Length = 431
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 118/333 (35%), Positives = 195/333 (58%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ ++ ++ W +P+W +N+++I +P +W+ +++ +++P
Sbjct: 119 LINGVLRQFQRQQDELLAE--FSGQDARWLHPMWLLNRLQIAWPQ--EWQAVVEANNERP 174
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N++ + + KLL+++G+ I P A++L P +S +P F G+ ++QD
Sbjct: 175 PMWLRVNRQHHSRDEWLKLLEENGMTGHIHPRFPDAVRLDAPAPVSALPGFEQGWVTVQD 234
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LL + G +LD C+APGGKT H+LE A +++VD + R++ + ENLKR
Sbjct: 235 ASAQGCVELLAPQKGETILDLCAAPGGKTTHILEAAPQASVMAVDVDAQRISRVYENLKR 294
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KA + + D RF + + FDRIL D PC+ +GV+RR+
Sbjct: 295 LKMKADVKVGD------------------GRFPSTWCGDTQFDRILLDAPCSATGVIRRH 336
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR +DI +L++ +IL+ +W LKPGG LL+ TCS+ EE+ EQ F
Sbjct: 337 PDIKWLRRDSDINELAQLQSEILDAIWPHLKPGGTLLYATCSVLPEENSEQIRAFLSRTP 396
Query: 296 DSI-----RLNSPG-QLLPTVNKKQDYDGFFYS 322
D+ +PG Q LP + DGFFY+
Sbjct: 397 DAQLDGTGSTQTPGIQNLPGATEG---DGFFYA 426
>gi|388599829|ref|ZP_10158225.1| 16S rRNA methyltransferase B [Vibrio campbellii DS40M4]
gi|444428412|ref|ZP_21223745.1| 16S rRNA methyltransferase B [Vibrio campbellii CAIM 519 = NBRC
15631]
gi|444238361|gb|ELU49971.1| 16S rRNA methyltransferase B [Vibrio campbellii CAIM 519 = NBRC
15631]
Length = 427
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 118/335 (35%), Positives = 196/335 (58%), Gaps = 30/335 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R + E+ + + N Y +P W + ++ YP QW++I++ ++K
Sbjct: 113 LINAVLRNYQRNQEELDQMAVSNNAGKY-GHPSWLLKLLQEAYPE--QWESIVEANNQKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + T Y LLK +++T A+KL P + K+P F G+ S+QD
Sbjct: 170 PMWLRVNHQHHTRDEYLALLKNENIDSTPHTQAMDALKLAAPCDVMKLPGFEKGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQL+ L+ + G +LD C+APGGKT H+LE + +++++D + +RL + ENLKR
Sbjct: 230 AAAQLSINYLEPKDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKR 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
LNL+A ++ D + +++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 290 LNLQAKVVCGD----------------ARHPQEWWQGEQFDRILLDAPCSATGVIRRHPD 333
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI L++ +I + +W LKPGG +++ TCS+ +E+ EQ F ++
Sbjct: 334 IKWLRRADDIAALAELQSEIFDAMWTQLKPGGTMVYATCSITPQENVEQVKAFLARTANA 393
Query: 298 IRLNS----PG-QLLPTVNKKQDYDGFFYSLFQKR 327
++S PG Q+LP ++D DGF+Y++ K+
Sbjct: 394 QLVDSDPKQPGRQILPG---EEDMDGFYYAVLTKK 425
>gi|113460188|ref|YP_718245.1| ribosomal RNA small subunit methyltransferase B [Haemophilus somnus
129PT]
gi|112822231|gb|ABI24320.1| 16S rRNA m(5)C-967 methyltransferase [Haemophilus somnus 129PT]
Length = 462
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 126/338 (37%), Positives = 197/338 (58%), Gaps = 24/338 (7%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
++NA+LR FLR++ +I I + +W +P W +N++K +Y N W+ I++ ++
Sbjct: 134 LLNAVLRRFLREQEQILA-----IVDKHWQTLHPEWLVNKLKQSYAN---WREIVEANNQ 185
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLETTIIG-PLAIKLHTPISISKIPKFFNGFCSIQ 117
KPP+ LRIN + ++ Y +LL + G+ T+ P A++LH +++ +P F G+ S+Q
Sbjct: 186 KPPMWLRINLQHCSIADYQQLLMERGISTSTTNHPQALRLHQASAVNLLPYFEQGWVSVQ 245
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
D AQ +A LL+ + +LDAC+APGGKT H+LE A + K+I++D +RL + ENL
Sbjct: 246 DLHAQWSALLLEPENNELILDACAAPGGKTTHILEQAPNAKVIALDIEPARLQRVKENLV 305
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
R+ +A +I D ++ ID N F+ FDRIL D PC+ +GV+RR+P
Sbjct: 306 RMKQQAIIICGDATQPEQWLSEIDFNA-IGLTFKSESAVQFDRILLDAPCSATGVIRRHP 364
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR+++DI L + +IL LWK LKP G L++ TCSL EE+ +Q F H D
Sbjct: 365 DIKWLRQESDITPLVQLQGQILEALWKKLKPQGILVYATCSLLPEENSQQIQHFLTKHND 424
Query: 297 S--------IRLNSPGQLLPTVNKKQDYDGFFYSLFQK 326
+ I Q +PT +Q DGF+Y+ +K
Sbjct: 425 AKLEPLPFTIGEEIGHQFVPT---EQGGDGFYYAKLRK 459
>gi|84393439|ref|ZP_00992196.1| Sun protein [Vibrio splendidus 12B01]
gi|84375955|gb|EAP92845.1| Sun protein [Vibrio splendidus 12B01]
Length = 426
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 117/337 (34%), Positives = 201/337 (59%), Gaps = 34/337 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR +LR + E+ K + + +++P W + ++ +YP+ QW+ +++ + K
Sbjct: 113 LINAVLRSYLRDQEEL-DEKAVSHNAGKYSHPSWILKMLQESYPD--QWEQLVEANNNKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTII--GPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N++ T Y +LLK +E T+ AIKL +P ++ +P F G+ S+QD
Sbjct: 170 PMWLRVNRQHHTRDEYVELLKNENIEYTLHPEAADAIKLASPCDVTLLPGFDRGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQL+ L + G +LD C+APGGKT H+LE D +++++D+++ RL+ + +NL+R
Sbjct: 230 AAAQLSVDFLTPKDGELILDCCAAPGGKTAHILEHTQDTEVVAIDSDIKRLDRVYDNLER 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L L+A +I D R+ ++ FDRIL D PC+ +GV+RR+
Sbjct: 290 LQLRADVICGDA------------------RYPEEWWTGSQFDRILLDAPCSATGVIRRH 331
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR +DI L++ +IL+ +W+ LK GG +++ TCS+ +E+ Q F + +
Sbjct: 332 PDIKWLRRASDIDALAELQSEILDAMWRQLKEGGTMVYATCSITPQENVLQVKAFLERTE 391
Query: 296 DSIRLNS----PG-QLLPTVNKKQDYDGFFYSLFQKR 327
++ + S PG Q+LP ++D DGF+Y++ K+
Sbjct: 392 NATLVGSDIEKPGRQILP---GEEDMDGFYYAVLVKQ 425
>gi|401765477|ref|YP_006580484.1| 16S rRNA methyltransferase B [Enterobacter cloacae subsp. cloacae
ENHKU01]
gi|400177011|gb|AFP71860.1| 16S rRNA methyltransferase B [Enterobacter cloacae subsp. cloacae
ENHKU01]
Length = 428
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 119/331 (35%), Positives = 193/331 (58%), Gaps = 32/331 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + E+ + +P W +N++K YP QW+NI + +++P
Sbjct: 116 LINGVLRQFQRQQEELLAE--FTQSETRYLHPDWLLNRLKKAYPQ--QWQNIAEANNQRP 171
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLE--TTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T ++ LL+++G+ T P A++L +P + +P F G+ ++QD
Sbjct: 172 PMWLRVNRNHHTRDAWLSLLEEAGMSGFTHDAYPDAVRLASPAPVHALPGFDEGWVTVQD 231
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADI-KLISVDNNLSRLNMISENLKR 177
A+AQ L+ ++G +LD C+APGGKT H+LE+A + +++VD + RL+ + +NLKR
Sbjct: 232 ASAQGCMTFLEPKNGEQILDLCAAPGGKTTHILEVAPLASVMAVDVDEQRLSRVYDNLKR 291
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L +KA + D K + FDRIL D PC+ +GV+RR+PD
Sbjct: 292 LGMKAQVKQGDGRKPA----------------EWCGETQFDRILLDAPCSATGVIRRHPD 335
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR DIK+L++ IL+ +W LKPGG L++ TCS+ EE+ +Q F K D+
Sbjct: 336 IKWLRRDRDIKELAQLQSDILDAIWPHLKPGGTLVYATCSVLPEENSQQIAAFLKRTPDA 395
Query: 298 IRLNS-----PGQL-LPTVNKKQDYDGFFYS 322
++ PGQ LP ++ DGFFY+
Sbjct: 396 TLRDTGTPENPGQQNLPGA---EEGDGFFYA 423
>gi|156972728|ref|YP_001443635.1| cytosine-C5-methylase [Vibrio harveyi ATCC BAA-1116]
gi|156524322|gb|ABU69408.1| hypothetical protein VIBHAR_00393 [Vibrio harveyi ATCC BAA-1116]
Length = 427
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 118/335 (35%), Positives = 196/335 (58%), Gaps = 30/335 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R + E+ + + N Y +P W + ++ YP QW++I++ ++K
Sbjct: 113 LINAVLRNYQRNQEELDQMAVSNNAGKY-GHPSWLLKLLQEAYPE--QWESIVEANNQKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + T Y LLK +++T A+KL P + K+P F G+ S+QD
Sbjct: 170 PMWLRVNHQHHTRDEYLALLKNENIDSTPHTQAMDALKLAAPCDVMKLPGFEKGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQL+ L+ + G +LD C+APGGKT H+LE + +++++D + +RL + ENLKR
Sbjct: 230 AAAQLSINYLEPKDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKR 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
LNL+A ++ D + +++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 290 LNLQAKVVCGD----------------ARHPQEWWQGEQFDRILLDAPCSATGVIRRHPD 333
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI L++ +I + +W LKPGG +++ TCS+ +E+ EQ F ++
Sbjct: 334 IKWLRRADDIAALAELQSEIFDAMWTQLKPGGTMVYATCSITPQENVEQVKAFLARTANT 393
Query: 298 IRLNS----PG-QLLPTVNKKQDYDGFFYSLFQKR 327
++S PG Q+LP ++D DGF+Y++ K+
Sbjct: 394 QLVDSDPKQPGRQILPG---EEDMDGFYYAVLTKK 425
>gi|419827748|ref|ZP_14351243.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-1A2]
gi|419831371|ref|ZP_14354846.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-61A2]
gi|422915775|ref|ZP_16950140.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-02A1]
gi|423810683|ref|ZP_17714729.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-55C2]
gi|423844921|ref|ZP_17718467.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-59A1]
gi|423876953|ref|ZP_17722134.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-60A1]
gi|423994708|ref|ZP_17739472.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-02C1]
gi|424011990|ref|ZP_17754755.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-55B2]
gi|424018002|ref|ZP_17757820.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-59B1]
gi|424623383|ref|ZP_18061875.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-50A1]
gi|424627953|ref|ZP_18066280.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-51A1]
gi|424631901|ref|ZP_18070039.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-52A1]
gi|424634989|ref|ZP_18073025.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-55A1]
gi|424638814|ref|ZP_18076726.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-56A1]
gi|424647068|ref|ZP_18084762.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-57A1]
gi|443525940|ref|ZP_21092047.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-78A1]
gi|341642136|gb|EGS66623.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-02A1]
gi|408017702|gb|EKG55188.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-50A1]
gi|408023435|gb|EKG60599.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-52A1]
gi|408028527|gb|EKG65417.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-56A1]
gi|408028786|gb|EKG65648.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-55A1]
gi|408038782|gb|EKG75109.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-57A1]
gi|408060041|gb|EKG94758.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-51A1]
gi|408624759|gb|EKK97697.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-1A2]
gi|408637513|gb|EKL09561.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-55C2]
gi|408645396|gb|EKL17051.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-60A1]
gi|408646495|gb|EKL18095.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-59A1]
gi|408652868|gb|EKL24059.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-61A2]
gi|408855786|gb|EKL95482.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-02C1]
gi|408863211|gb|EKM02703.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-55B2]
gi|408871813|gb|EKM11041.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-59B1]
gi|443455748|gb|ELT19508.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-78A1]
Length = 426
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 117/335 (34%), Positives = 194/335 (57%), Gaps = 30/335 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R + E ++ + + +P W + ++ +YP QW+ I++ + K
Sbjct: 113 LINAVLRNYQRDQ-EGLDAQATSHDAGRYGHPGWLLKLLQESYPE--QWQQIVEANNSKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + T Y LL+++G+ TT A+ L TP + ++P F G+ S+QD
Sbjct: 170 PMWLRVNHQHHTRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQLA L ++G +LD C+APGGKT H+LE + +++++D + +RL + ENL+R
Sbjct: 230 AAAQLALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQR 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L A +I D ++++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 290 LQLTAQVICGDARYPQ----------------QWWQGEQFDRILLDAPCSATGVIRRHPD 333
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI L++ +IL+ +W+ LKPGG L++ TCS+ +E+ Q F + D+
Sbjct: 334 IKWLRRADDIAALAELQREILDAMWQQLKPGGSLVYATCSITPQENRLQVKAFLERTPDA 393
Query: 298 IRLNS----PG-QLLPTVNKKQDYDGFFYSLFQKR 327
+ S PG Q+LP ++ DGF+Y++ K+
Sbjct: 394 RLVGSDPAQPGRQILPG---EEAMDGFYYAVLSKQ 425
>gi|419960317|ref|ZP_14476359.1| 16S rRNA methyltransferase B [Enterobacter cloacae subsp. cloacae
GS1]
gi|388604809|gb|EIM34037.1| 16S rRNA methyltransferase B [Enterobacter cloacae subsp. cloacae
GS1]
Length = 420
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 117/330 (35%), Positives = 195/330 (59%), Gaps = 30/330 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + E+ + +P W +N++K YP QW++I+D +++P
Sbjct: 108 LINGVLRQFQRQQDELLAE--FAQSEARFLHPEWLLNRLKKAYPQ--QWQDIVDANNQRP 163
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLE--TTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T ++ LL+++G+ T P A++L +P + +P F G+ ++QD
Sbjct: 164 PMWLRVNRNHHTRDAWLALLEETGMSGFTHAAYPDAVRLASPAPVHALPGFEEGWVTVQD 223
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L+ + G +LD C+APGGKT H+LE+A +++VD + RL+ + +NLKR
Sbjct: 224 ASAQGCMAWLEPKDGEQILDLCAAPGGKTTHILEVAPQASVMAVDVDEQRLSRVYDNLKR 283
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L +KA + D +K + + + FDRIL D PC+ +GV+RR+PD
Sbjct: 284 LGMKAQVKQGD-------------GRKPAD---WCGDTRFDRILLDAPCSATGVIRRHPD 327
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR DIK+L++ +IL+ +W LKPGG L++ TCS+ EE+ +Q F K D+
Sbjct: 328 IKWLRRDRDIKELAQLQSEILDAIWPHLKPGGTLVYATCSVLPEENSQQIAAFLKRTPDA 387
Query: 298 IRLNS-----PGQLLPTVNKKQDYDGFFYS 322
++ PG L + ++ DGFFY+
Sbjct: 388 TLHDTGTPEHPG--LQNLPGAEEGDGFFYA 415
>gi|417792980|ref|ZP_12440279.1| 16S rRNA methyltransferase B [Cronobacter sakazakii E899]
gi|449306568|ref|YP_007438924.1| 16S rRNA methyltransferase B [Cronobacter sakazakii SP291]
gi|333952958|gb|EGL70961.1| 16S rRNA methyltransferase B [Cronobacter sakazakii E899]
gi|449096601|gb|AGE84635.1| 16S rRNA methyltransferase B [Cronobacter sakazakii SP291]
Length = 429
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 118/333 (35%), Positives = 195/333 (58%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ ++ ++ W +P+W +N+++I +P +W+ +++ +++P
Sbjct: 117 LINGVLRQFQRQQDELLAE--FSGQDARWLHPMWLLNRLQIAWPQ--EWQAVVEANNERP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N++ + + KLL+++G+ I P A++L P +S +P F G+ ++QD
Sbjct: 173 PMWLRVNRQHHSRDEWLKLLEENGMTGHIHPRFPDAVRLDAPAPVSALPGFEQGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LL + G +LD C+APGGKT H+LE A +++VD + R++ + ENLKR
Sbjct: 233 ASAQGCVELLAPQKGETILDLCAAPGGKTTHILEAAPQASVMAVDVDAQRISRVYENLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KA + + D RF + + FDRIL D PC+ +GV+RR+
Sbjct: 293 LKMKADVKVGD------------------GRFPSTWCGDTQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR +DI +L++ +IL+ +W LKPGG LL+ TCS+ EE+ EQ F
Sbjct: 335 PDIKWLRRDSDINELAQLQSEILDAIWPHLKPGGTLLYATCSVLPEENSEQIRAFLSRTP 394
Query: 296 DSI-----RLNSPG-QLLPTVNKKQDYDGFFYS 322
D+ +PG Q LP + DGFFY+
Sbjct: 395 DAQLDGTGSTQTPGIQNLPGATEG---DGFFYA 424
>gi|372267037|ref|ZP_09503085.1| sun protein [Alteromonas sp. S89]
Length = 435
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 123/347 (35%), Positives = 192/347 (55%), Gaps = 41/347 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++N +LR LR K E K+ + +P W VK + + + I ++ P
Sbjct: 112 VVNGVLRNALRNK-EALTRKLSGNPQFSSAHPEWLQQAVKAAW--GAEARAIFTANNENP 168
Query: 61 PLTLRINQRKTTLISYNKLLKKSGL--ETTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P++LR+N+ + + Y + L+ +G+ E + L +P+++S++P F +G S+QD
Sbjct: 169 PMSLRVNRSQISRADYLQQLQDTGINAEPCTFSAAGLILESPVAVSRLPGFEDGLVSVQD 228
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEI-ADIKLISVDNNLSRLNMISENLKR 177
+AQLAAPLLD + G VLDAC+APGGKTCHLLE+ D+ L ++D RL+ + ENL+R
Sbjct: 229 QSAQLAAPLLDPQPGERVLDACAAPGGKTCHLLELQPDLDLSALDIEEERLDRVIENLER 288
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L + A +I +D ++ ++ + FDRIL D PC+ +GV+RRNPD
Sbjct: 289 LGIGAQIICADAAEPE----------------HWWDGEPFDRILLDAPCSATGVIRRNPD 332
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I LRR DI++L+ KIL +W++LKPGG LL+ TCS+ EE+ Q F D+
Sbjct: 333 IKLLRRPEDIQELAALQGKILRAMWRLLKPGGTLLYATCSILPEENSAQVARFVAETPDA 392
Query: 298 IRLNSPG---------------QLLPTVNKKQDYDGFFYSLFQKRKE 329
R N+P QLLP ++ DGF+Y+ +K+ +
Sbjct: 393 -RDNTPQLLHGEPWGLPQEVGMQLLPGLHAG---DGFYYAKLEKQAQ 435
>gi|254507306|ref|ZP_05119442.1| ribosomal RNA small subunit methyltransferase B [Vibrio
parahaemolyticus 16]
gi|219549766|gb|EED26755.1| ribosomal RNA small subunit methyltransferase B [Vibrio
parahaemolyticus 16]
Length = 426
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 119/337 (35%), Positives = 199/337 (59%), Gaps = 34/337 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR +LR + E K + + + +P W +N ++ +YP QW+ +++ + K
Sbjct: 113 LINAVLRSYLRDQ-EALDEKAVSHNAGKYGHPNWLLNMLRESYPE--QWEQLVEANNSKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTII--GPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N++ T Y +LLK + +E +I AIKL +P ++ +P F G+ S+QD
Sbjct: 170 PMWLRVNRQHHTRDEYLELLKDANIEFSIHPEAEDAIKLASPCDVTLLPGFDRGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQL+ L ++G +LD C+APGGKT H+LE D +++++D + RL+ + +NL+R
Sbjct: 230 AAAQLSVNYLQPQNGELILDCCAAPGGKTAHILEHTEDTEVVAIDCDAKRLDRVYDNLER 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L L+A +I D R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 290 LQLRADVICGDA------------------RYPQEWWSGEKFDRILLDAPCSATGVIRRH 331
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR NDI L++ +I++ +W LK GG +++ TCS+ +E+ Q F +
Sbjct: 332 PDIKWLRRANDIDALAELQSEIMDAMWGQLKAGGTMVYATCSITPKENVLQVKSFLERTS 391
Query: 296 DSI----RLNSPG-QLLPTVNKKQDYDGFFYSLFQKR 327
D+ +N+PG Q+LP ++D DGF+Y++ K+
Sbjct: 392 DATLVGSDINNPGRQILPG---EEDMDGFYYAVLVKQ 425
>gi|153212957|ref|ZP_01948551.1| sun protein [Vibrio cholerae 1587]
gi|153826427|ref|ZP_01979094.1| sun protein [Vibrio cholerae MZO-2]
gi|124116183|gb|EAY35003.1| sun protein [Vibrio cholerae 1587]
gi|149739813|gb|EDM54008.1| sun protein [Vibrio cholerae MZO-2]
Length = 434
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 118/335 (35%), Positives = 194/335 (57%), Gaps = 30/335 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R + E ++ + + +P W + +K +YP QW+ I++ + K
Sbjct: 121 LINAVLRNYQRDQ-EGLDAQATSHDAGRYGHPGWLLKLLKESYPE--QWQQIVEANNSKA 177
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + T Y LL+++G+ TT A+ L TP + ++P F G+ S+QD
Sbjct: 178 PMWLRVNHQYHTRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQD 237
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQLA L ++G +LD C+APGGKT H+LE + +++++D + +RL + ENL+R
Sbjct: 238 AAAQLALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQR 297
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L A +I D ++++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 298 LQLTAQVICGDARYPQ----------------QWWQGEQFDRILLDAPCSATGVIRRHPD 341
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI L++ +IL+ +W+ LKPGG L++ TCS+ +E+ Q F + D+
Sbjct: 342 IKWLRRADDIAALAELQREILDAMWQQLKPGGSLVYATCSITPQENRLQVKAFLERTPDA 401
Query: 298 IRLNS----PG-QLLPTVNKKQDYDGFFYSLFQKR 327
+ S PG Q+LP ++ DGF+Y++ K+
Sbjct: 402 RLVGSDPAQPGRQILPG---EEAMDGFYYAVLSKQ 433
>gi|170718224|ref|YP_001785246.1| sun protein [Haemophilus somnus 2336]
gi|168826353|gb|ACA31724.1| sun protein [Haemophilus somnus 2336]
Length = 462
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 126/338 (37%), Positives = 197/338 (58%), Gaps = 24/338 (7%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
++NA+LR FLR++ +I I + +W +P W +N++K +Y N W+ I++ ++
Sbjct: 134 LLNAVLRRFLREQEQILA-----IVDKHWQTLHPEWLVNKLKQSYAN---WREIVEANNQ 185
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLETTIIG-PLAIKLHTPISISKIPKFFNGFCSIQ 117
KPP+ LRIN + ++ Y +LL + G+ T+ P A++LH +++ +P F G+ S+Q
Sbjct: 186 KPPMWLRINLQHCSIADYQQLLMERGISTSTTNHPQALRLHHASAVNLLPYFEQGWVSVQ 245
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
D AQ +A LL+ + +LDAC+APGGKT H+LE A + K+I++D +RL + ENL
Sbjct: 246 DLHAQWSALLLEPENDELILDACAAPGGKTTHILEQAPNAKVIALDIEPARLQRVKENLV 305
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
R+ +A +I D ++ ID N F+ FDRIL D PC+ +GV+RR+P
Sbjct: 306 RMKQQAIIICGDATQPEQWLSEIDFNA-IGLTFKSESAVQFDRILLDAPCSATGVIRRHP 364
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR+++DI L + +IL LWK LKP G L++ TCSL EE+ +Q F H D
Sbjct: 365 DIKWLRQESDITPLVQLQGQILEALWKKLKPQGILVYATCSLLPEENSQQIQHFLAKHND 424
Query: 297 S--------IRLNSPGQLLPTVNKKQDYDGFFYSLFQK 326
+ I Q +PT +Q DGF+Y+ +K
Sbjct: 425 AKLEPLPFTIGEEIGHQFVPT---EQGGDGFYYAKLRK 459
>gi|429121508|ref|ZP_19182129.1| Ribosomal RNA small subunit methyltransferase B [Cronobacter
sakazakii 680]
gi|426323981|emb|CCK12866.1| Ribosomal RNA small subunit methyltransferase B [Cronobacter
sakazakii 680]
Length = 431
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 118/333 (35%), Positives = 195/333 (58%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ ++ ++ W +P+W +N+++I +P +W+ + + +++P
Sbjct: 119 LINGVLRQFQRQQDELLAE--FSGQDARWLHPMWLLNRLQIAWPQ--EWQAVAEANNERP 174
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N++ + + KLL+++G+ I P A++L P +S +P F G+ ++QD
Sbjct: 175 PMWLRVNRQHHSRDEWLKLLEENGMTGHIHPRYPDAVRLDAPAPVSALPGFEQGWVTVQD 234
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LL ++G +LD C+APGGKT H+LE A +++VD + R++ + ENLKR
Sbjct: 235 ASAQGCVELLAPQNGETILDLCAAPGGKTTHILEAAPQASVMAVDVDAQRISRVYENLKR 294
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KA + + D RF + + FDRIL D PC+ +GV+RR+
Sbjct: 295 LKMKADVKVGD------------------GRFPSTWCGDTQFDRILLDAPCSATGVIRRH 336
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR +DI +L++ +IL+ +W LKPGG LL+ TCS+ EE+ EQ F
Sbjct: 337 PDIKWLRRDSDIGELAQLQSEILDAIWPHLKPGGTLLYATCSVLPEENSEQIRAFLSRTP 396
Query: 296 DSI-----RLNSPG-QLLPTVNKKQDYDGFFYS 322
D+ +PG Q LP + DGFFY+
Sbjct: 397 DAQLDGTGSTQTPGIQNLPGATEG---DGFFYA 426
>gi|410088703|ref|ZP_11285392.1| Ribosomal RNA small subunit methyltransferase B [Morganella
morganii SC01]
gi|409764838|gb|EKN48966.1| Ribosomal RNA small subunit methyltransferase B [Morganella
morganii SC01]
Length = 430
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 118/335 (35%), Positives = 198/335 (59%), Gaps = 33/335 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ ++ + N +ES W +P W +++++ YP+ W+ ++ ++KP
Sbjct: 117 LINGVLRQFQRQE-QVLSERFAN-NESRWLHPKWLLSRIQAAYPD--NWEAVITANNEKP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLET--TIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + Y LL + +E P A++L P ++ +P F +G+ ++QD
Sbjct: 173 PMWLRVNRNHHSAQEYQALLTEKDIEAFYNPAYPDALRLAVPCPVTDLPGFADGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKR 177
++AQ A LLD ++ +LD C+APGGKT H+LEIA +++VD + RL ++ENL+R
Sbjct: 233 SSAQGCALLLDPQNDETILDLCAAPGGKTTHILEIAPRAHVMAVDVDKQRLTRVNENLQR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L A + K + R+ ++ +++ FDRIL D PC+ +GV+RR+
Sbjct: 293 LKQNAVV------------------KTGDGRYPEQWAESQIFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR NDI +L+ +IL+ +W LKPGG L++ TCS+ EE+ Q F +H+
Sbjct: 335 PDIKWLRRDNDINELAALQREILDAVWPYLKPGGTLVYATCSVLPEENIHQINNFLSSHR 394
Query: 296 DSIRLNSPG---QLLPTVNKKQDYDGFFYSLFQKR 327
D++ ++P Q+LP Q DGFFY+ K+
Sbjct: 395 DAVLTDTPATGYQMLPDA---QSGDGFFYAKLVKQ 426
>gi|330002246|ref|ZP_08304257.1| ribosomal RNA small subunit methyltransferase B [Klebsiella sp. MS
92-3]
gi|328537385|gb|EGF63634.1| ribosomal RNA small subunit methyltransferase B [Klebsiella sp. MS
92-3]
Length = 431
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 122/339 (35%), Positives = 197/339 (58%), Gaps = 36/339 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + HE+ + +P W + +++ +P QW+ I++ +++P
Sbjct: 117 LINGVLRQFQRQQEALLAE--FAEHENRYLHPKWLLKRLQQAWPE--QWQEIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLE--TTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + + LL ++GLE T P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRNHHSRDEWLALLNETGLEGFTHPDYPDAVRLATPAPVHALPGFAEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L +G +LD C+APGGKT H+LE+A ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMRYLQPENGERILDLCAAPGGKTTHILEVAPQAQVMAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KA + K+ + RF ++ N+ FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKAEV------------------KQGDGRFPEQWCGNEQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +ILN +W LKPGG L++ TCS+ EE+ +Q F
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILNAIWGHLKPGGTLVYATCSILPEENSQQIAAFLARTP 394
Query: 296 DSI-----RLNSPGQL-LPTVNKKQDYDGFFYSLFQKRK 328
D+ SPGQ LP V ++ DGFFY+ KR+
Sbjct: 395 DAELHATGTPASPGQQNLPGV---EEGDGFFYAKLIKRR 430
>gi|297581922|ref|ZP_06943842.1| sun protein [Vibrio cholerae RC385]
gi|297533789|gb|EFH72630.1| sun protein [Vibrio cholerae RC385]
Length = 434
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 118/335 (35%), Positives = 194/335 (57%), Gaps = 30/335 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R + E ++ + + +P W + +K +YP QW+ I++ + K
Sbjct: 121 LINAVLRNYQRDQ-EGLDAQATSHDAGRYGHPGWLLKLLKESYPE--QWQQIVEANNSKA 177
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + T Y LL+++G+ TT A+ L TP + ++P F G+ S+QD
Sbjct: 178 PMWLRVNHQHHTRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQD 237
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQLA L ++G +LD C+APGGKT H+LE + +++++D + +RL + ENL+R
Sbjct: 238 AAAQLALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQR 297
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L A +I D ++++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 298 LQLTAQVICGDARYPQ----------------QWWQGEQFDRILLDAPCSATGVIRRHPD 341
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI L++ +IL+ +W+ LKPGG L++ TCS+ +E+ Q F + D+
Sbjct: 342 IKWLRRADDIAALAELQREILDAMWQQLKPGGSLVYATCSITPQENLLQVKAFLERTPDA 401
Query: 298 IRLNS----PG-QLLPTVNKKQDYDGFFYSLFQKR 327
+ S PG Q+LP ++ DGF+Y++ K+
Sbjct: 402 RLVGSDPAQPGRQILPG---EEAMDGFYYAVLSKQ 433
>gi|421494913|ref|ZP_15942250.1| hypothetical protein MU9_3422 [Morganella morganii subsp. morganii
KT]
gi|455737432|ref|YP_007503698.1| Ribosomal RNA small subunit methyltransferase B [Morganella
morganii subsp. morganii KT]
gi|400190802|gb|EJO23961.1| hypothetical protein MU9_3422 [Morganella morganii subsp. morganii
KT]
gi|455418995|gb|AGG29325.1| Ribosomal RNA small subunit methyltransferase B [Morganella
morganii subsp. morganii KT]
Length = 430
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 118/335 (35%), Positives = 198/335 (59%), Gaps = 33/335 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ ++ + N +ES W +P W +++++ YP+ W+ ++ ++KP
Sbjct: 117 LINGVLRQFQRQE-QVLSERFAN-NESRWLHPKWLLSRIQAAYPD--NWEAVITANNEKP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLET--TIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + Y LL + +E P A++L P ++ +P F +G+ ++QD
Sbjct: 173 PMWLRVNRNHHSAQEYQALLTEKDIEAFYNPAYPDALRLAVPCPVTDLPGFADGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKR 177
++AQ A LLD ++ +LD C+APGGKT H+LEIA +++VD + RL ++ENL+R
Sbjct: 233 SSAQGCALLLDPQNDETILDLCAAPGGKTTHILEIAPRAHVMAVDVDKQRLTRVNENLQR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L A + K + R+ ++ +++ FDRIL D PC+ +GV+RR+
Sbjct: 293 LKQNAVV------------------KTGDGRYPEQWAESQTFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR NDI +L+ +IL+ +W LKPGG L++ TCS+ EE+ Q F +H+
Sbjct: 335 PDIKWLRRDNDINELAALQREILDAVWPYLKPGGTLVYATCSVLPEENIHQINNFLSSHR 394
Query: 296 DSIRLNSPG---QLLPTVNKKQDYDGFFYSLFQKR 327
D++ ++P Q+LP Q DGFFY+ K+
Sbjct: 395 DAVLTDTPATGYQMLPDA---QSGDGFFYAKLVKQ 426
>gi|153834294|ref|ZP_01986961.1| ribosomal RNA small subunit methyltransferase B [Vibrio harveyi
HY01]
gi|148869302|gb|EDL68316.1| ribosomal RNA small subunit methyltransferase B [Vibrio harveyi
HY01]
Length = 427
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 118/335 (35%), Positives = 196/335 (58%), Gaps = 30/335 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R + E+ + + N Y +P W + ++ YP QW++I++ ++K
Sbjct: 113 LINAVLRNYQRNQEELDQMAVSNNAGKY-GHPSWLLKLLQEAYPE--QWESIVEANNQKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + T Y LLK +++T A+KL P + K+P F G+ S+QD
Sbjct: 170 PMWLRVNHQYHTRDEYLALLKNENIDSTPHTQAMDALKLAAPCDVMKLPGFEKGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQL+ L+ + G +LD C+APGGKT H+LE + +++++D + +RL + ENLKR
Sbjct: 230 AAAQLSINYLEPKDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKR 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
LNL+A ++ D + +++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 290 LNLQAKVVCGD----------------ARHPQEWWQGEQFDRILLDAPCSATGVIRRHPD 333
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI L++ +I + +W LKPGG +++ TCS+ +E+ EQ F ++
Sbjct: 334 IKWLRRADDIAALAELQSEIFDAMWTQLKPGGTMVYATCSITPQENVEQVKAFLARTANA 393
Query: 298 IRLNS----PG-QLLPTVNKKQDYDGFFYSLFQKR 327
++S PG Q+LP ++D DGF+Y++ K+
Sbjct: 394 QLVDSDPKQPGRQILPG---EEDMDGFYYAVLTKK 425
>gi|206577662|ref|YP_002236309.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae 342]
gi|224493255|sp|B5XNC2.1|RSMB_KLEP3 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|206566720|gb|ACI08496.1| ribosomal RNA small subunit methyltransferase B [Klebsiella
pneumoniae 342]
Length = 431
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 121/338 (35%), Positives = 197/338 (58%), Gaps = 34/338 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + HE+ + +P W + +++ +P QW+ I+D +++P
Sbjct: 117 LINGVLRQFQRQQEALLVE--FAEHENRYLHPKWLLKRLQQAWPQ--QWQEIVDANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLE--TTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + + LLK++GLE T P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRNHHSRDEWLALLKEAGLEGFTHPDYPDAVRLATPAPVHALPGFAEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L +G +LD C+APGGKT H+LE+A ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMRYLLPENGERILDLCAAPGGKTTHILEVAPQAQVMAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KA + K+ + RF ++ N+ FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKAEV------------------KQGDGRFPEQWCGNEQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +ILN+ W+ LKPGG L++ TCS+ EE+ +Q F
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILNSTWEHLKPGGTLVYATCSILPEENSQQISAFLARTP 394
Query: 296 DSI-----RLNSPGQLLPTVNKKQDYDGFFYSLFQKRK 328
D+ SPGQ + ++ DGFFY+ KR+
Sbjct: 395 DAELHATGTPASPGQQ--NLPGPEEGDGFFYAKLIKRR 430
>gi|152972197|ref|YP_001337343.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|224493256|sp|A6TEU2.1|RSMB_KLEP7 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|150957046|gb|ABR79076.1| 16S rRNA m5C967 methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
Length = 431
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 122/339 (35%), Positives = 197/339 (58%), Gaps = 36/339 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + HE+ + +P W + +++ +P QW+ I++ +++P
Sbjct: 117 LINGVLRQFQRQQEALLAE--FAEHENRYLHPKWLLKRLQQAWPE--QWQEIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLE--TTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + + LL ++GLE T P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRNHHSRDEWLALLNEAGLEGFTHPDYPDAVRLATPAPVHALPGFAEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L +G +LD C+APGGKT H+LE+A ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMRYLQPENGERILDLCAAPGGKTTHILEVAPQAQVMAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KA + K+ + RF ++ N+ FDRIL D PC+ +GV+RR+
Sbjct: 293 LGVKAEV------------------KQGDGRFPEQWCGNEQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +ILN +W LKPGG L++ TCS+ EE+ +Q F
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILNAIWGHLKPGGTLVYATCSILPEENSQQIAAFLARTP 394
Query: 296 DSI-----RLNSPGQL-LPTVNKKQDYDGFFYSLFQKRK 328
D+ SPGQ LP V ++ DGFFY+ KR+
Sbjct: 395 DAELHATGTPASPGQQNLPGV---EEGDGFFYAKLIKRR 430
>gi|170724406|ref|YP_001758432.1| sun protein [Shewanella woodyi ATCC 51908]
gi|169809753|gb|ACA84337.1| sun protein [Shewanella woodyi ATCC 51908]
Length = 425
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 121/333 (36%), Positives = 186/333 (55%), Gaps = 29/333 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR R++ K + +N P W I +K YP+ W+ +++ H++P
Sbjct: 114 VINAVLRNIQRQE----KPLPTDNDTLTYNTPAWIIKSLKQAYPD--SWQTVIENSHQRP 167
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTI-IGPLAIKLHTPISISKIPKFFNGFCSIQDA 119
P+ LR N R T Y LL ++ + + AI L +P + ++P F G S+QD
Sbjct: 168 PMWLRNNVRSQTRDEYLALLAEAEISASAGQSSDAILLESPKDVMQLPGFEQGAASVQDG 227
Query: 120 AAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLN 179
AAQ AA LL G +LDAC+APGGKTCH+LE AD +L++VD + +RL + +NL RL+
Sbjct: 228 AAQWAATLLAPADGELILDACAAPGGKTCHILERADTELVAVDFDANRLERVQQNLDRLS 287
Query: 180 LKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIP 239
L A L+ D + I+ +++ FDRIL D PC+ +GV+RR+PDI
Sbjct: 288 LNAKLVHGDAADID----------------SWWQGDKFDRILLDAPCSATGVIRRHPDIK 331
Query: 240 WLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIR 299
WLR++ DI++L++ KIL++ WK LKPGG LL+ TCS+ +E+ +Q F + D+
Sbjct: 332 WLRKQADIEELAQLQSKILDHCWKWLKPGGTLLYATCSILPQENAQQISAFLERTHDATL 391
Query: 300 LNSPGQLLPT------VNKKQDYDGFFYSLFQK 326
+ Q P ++ DGF+Y+ K
Sbjct: 392 IAISQQPNPDDIGWQITPGTENMDGFYYARLVK 424
>gi|419764950|ref|ZP_14291189.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae DSM 30104]
gi|397742078|gb|EJK89297.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae DSM 30104]
Length = 431
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 122/339 (35%), Positives = 196/339 (57%), Gaps = 36/339 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + HE+ + +P W + +++ +P QW+ I++ +++P
Sbjct: 117 LINGVLRQFQRQQEALLAE--FAEHENRYLHPKWLLKRLQQAWPE--QWQEIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLE--TTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + + LL ++GLE T P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRNHHSRDEWLALLNETGLEGFTHPDYPDAVRLATPAPVHALPGFAEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L +G +LD C+APGGKT H+LE+A ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMRYLQPENGERILDLCAAPGGKTTHILEVAPQAQVMAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KA + K+ + RF ++ N+ FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKAEV------------------KQGDGRFPEQWCGNEQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +ILN W LKPGG L++ TCS+ EE+ +Q F
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILNATWTHLKPGGTLVYATCSILPEENSQQIAAFLARTP 394
Query: 296 DSI-----RLNSPGQL-LPTVNKKQDYDGFFYSLFQKRK 328
D+ SPGQ LP V ++ DGFFY+ KR+
Sbjct: 395 DAELHATGTPASPGQQNLPGV---EEGDGFFYAKLIKRR 430
>gi|374313841|ref|YP_005060270.1| ribosomal RNA small subunit methyltransferase B [Serratia
symbiotica str. 'Cinara cedri']
gi|363988067|gb|AEW44258.1| ribosomal RNA small subunit methyltransferase B [Serratia
symbiotica str. 'Cinara cedri']
Length = 429
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 127/331 (38%), Positives = 193/331 (58%), Gaps = 32/331 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN ILR+FLR++ + +S N + + +P W + ++++ YP QW+ I++ ++KP
Sbjct: 117 LINGILRQFLRQQSTLVQSASNN--QCRYLHPSWLLKRIQLAYP--MQWEQIINANNQKP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGL----ETTIIGPLAIKLHTPISISKIPKFFNGFCSI 116
P+ LRIN+ T + Y +L+ K G+ TT A++L TP ++ +P F +G+ +I
Sbjct: 173 PMWLRINRLHHTRVQYLQLINKLGIAAKPHTTYTD--ALRLLTPCDVNNLPGFTDGWITI 230
Query: 117 QDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENL 175
QDA+AQ LL+ ++ +LD C+APGGKT H+LE A K++++D N R+ I ENL
Sbjct: 231 QDASAQGCISLLNPQNNEQILDLCAAPGGKTTHILEAAPKAKVMAIDINQQRITRIKENL 290
Query: 176 KRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRN 235
+RL+L A + L D ++ NK FDRIL D PC+ SGV+RR+
Sbjct: 291 QRLHLHAEIKLGD----------------GRTPQQWCGNKQFDRILLDAPCSASGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI K + +IL +W LK G +++ TCS+ EE+ EQ F KNHK
Sbjct: 335 PDIKWLRRDCDIAKFTSLQAEILTAIWPHLKSSGVMIYATCSILPEENSEQIAAFLKNHK 394
Query: 296 DSIRLNSPGQL-LP---TVNKKQDYDGFFYS 322
++ RL G L LP + +D DGFF +
Sbjct: 395 NA-RLVETGSLELPGQQNLPHPEDGDGFFCA 424
>gi|260774556|ref|ZP_05883469.1| ribosomal RNA small subunit methyltransferase B [Vibrio
metschnikovii CIP 69.14]
gi|260610462|gb|EEX35668.1| ribosomal RNA small subunit methyltransferase B [Vibrio
metschnikovii CIP 69.14]
Length = 426
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 118/335 (35%), Positives = 196/335 (58%), Gaps = 30/335 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR +LR + E + + + + +P W + ++ YP QW+ I++ + K
Sbjct: 113 LINAVLRSYLRDQ-EALDAFAVSHNAGLYAHPSWLLKLLQEAYPQ--QWQTIIEANNSKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTI--IGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N++ + +Y LL +E T+ AIKL +P ++ +P F G+ S+QD
Sbjct: 170 PMWLRVNRQHHSREAYLALLDNEQIEYTVHPQAADAIKLASPCDVTLLPGFDRGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQLA L + G +LD C+APGGKT H+LE D +++++D++ +RL + +NL+R
Sbjct: 230 AAAQLAIDYLQPQDGELILDCCAAPGGKTAHILEHTQDTEVVAIDSDAARLERVYDNLER 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L+A +I D +++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 290 LQLRADVICGDARYPE----------------EWWQGEQFDRILLDAPCSATGVIRRHPD 333
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI+ L++ +IL+ +WK LK GG L++ TCS+ +E+ +Q F +
Sbjct: 334 IKWLRRASDIEALAELQSEILDAMWKQLKIGGTLVYATCSITPQENSQQIKAFLARTPKA 393
Query: 298 IRLNS----PG-QLLPTVNKKQDYDGFFYSLFQKR 327
++S PG Q+LP +QD DGF+Y++ +K+
Sbjct: 394 QLIDSDPEQPGRQILP---GEQDMDGFYYAVLRKQ 425
>gi|449053761|ref|ZP_21732592.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae hvKP1]
gi|448875566|gb|EMB10579.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae hvKP1]
Length = 431
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 122/339 (35%), Positives = 196/339 (57%), Gaps = 36/339 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + HE+ + +P W + +++ +P QW+ I++ +++P
Sbjct: 117 LINGVLRQFQRQQEALLAE--FAEHENRYLHPKWLLKRLQQAWPQ--QWQEIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLE--TTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + + LL ++GLE T P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRNHHSRDEWLALLNETGLEGFTHPDYPDAVRLATPAPVHALPGFAEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L +G +LD C+APGGKT H+LE+A ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMRYLQPENGERILDLCAAPGGKTTHILEVAPQAQVMAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KA + K+ + RF ++ N+ FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKAEV------------------KQGDGRFPEQWCGNEQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +ILN W LKPGG L++ TCS+ EE+ +Q F
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILNATWTHLKPGGTLVYATCSILPEENSQQIAAFLARTP 394
Query: 296 DSI-----RLNSPGQL-LPTVNKKQDYDGFFYSLFQKRK 328
D+ SPGQ LP V ++ DGFFY+ KR+
Sbjct: 395 DAELHATGTPASPGQQNLPGV---EEGDGFFYAKLIKRR 430
>gi|421348925|ref|ZP_15799296.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HE-25]
gi|395957118|gb|EJH67703.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HE-25]
Length = 426
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 118/335 (35%), Positives = 194/335 (57%), Gaps = 30/335 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R + E ++ + + +P W + +K +YP QW+ I++ + K
Sbjct: 113 LINAVLRNYQRDQ-EGLDAQATSHDAGRYVHPGWLLKLLKESYPE--QWQQIVEANNSKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + T Y LL+++G+ TT A+ L TP + ++P F G+ S+QD
Sbjct: 170 PMWLRVNHQHHTRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQLA L ++G +LD C+APGGKT H+LE + +++++D + +RL + ENL+R
Sbjct: 230 AAAQLALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQR 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L A +I D ++++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 290 LQLTAQVICGDARYPQ----------------QWWQGEQFDRILLDAPCSATGVIRRHPD 333
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI L++ +IL+ +W+ LKPGG L++ TCS+ +E+ Q F + D+
Sbjct: 334 IKWLRRADDIAALAELQREILDAMWQQLKPGGSLVYATCSITPQENCLQVKAFLERTPDA 393
Query: 298 IRLNS----PG-QLLPTVNKKQDYDGFFYSLFQKR 327
+ S PG Q+LP ++ DGF+Y++ K+
Sbjct: 394 RLVGSDPAQPGRQILPG---EEAMDGFYYAVLSKQ 425
>gi|365140596|ref|ZP_09346606.1| ribosomal RNA small subunit methyltransferase B [Klebsiella sp.
4_1_44FAA]
gi|363653451|gb|EHL92417.1| ribosomal RNA small subunit methyltransferase B [Klebsiella sp.
4_1_44FAA]
Length = 431
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 122/339 (35%), Positives = 197/339 (58%), Gaps = 36/339 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + HE+ + +P W + +++ +P QW+ I++ +++P
Sbjct: 117 LINGVLRQFQRQQEALLAE--FAEHENRYLHPKWLLKRLQQAWPQ--QWQEIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLE--TTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + + LL ++GLE T P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRNHHSRDEWLALLNEAGLEGFTHPDYPDAVRLATPAPVHALPGFAEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L +G +LD C+APGGKT H+LE+A ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCIRYLQPENGERILDLCAAPGGKTTHILEVAPQAQVMAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KA + K+ + RF ++ N+ FDRIL D PC+ +GV+RR+
Sbjct: 293 LGVKAEV------------------KQGDGRFPEQWCGNEQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +ILN +W LKPGG L++ TCS+ EE+ +Q F
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILNAIWGHLKPGGTLVYATCSILPEENSQQIAAFLARTP 394
Query: 296 DSI-----RLNSPGQL-LPTVNKKQDYDGFFYSLFQKRK 328
D+ SPGQ LP V ++ DGFFY+ KR+
Sbjct: 395 DAELHATGTPASPGQQNLPGV---EEGDGFFYAKLIKRR 430
>gi|418531359|ref|ZP_13097274.1| 16S rRNA methyltransferase B [Comamonas testosteroni ATCC 11996]
gi|371451649|gb|EHN64686.1| 16S rRNA methyltransferase B [Comamonas testosteroni ATCC 11996]
Length = 461
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 122/343 (35%), Positives = 191/343 (55%), Gaps = 33/343 (9%)
Query: 2 INAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
INA LR FLR++ + S N + WN+P WWI +++ +P W+ IL + +PP
Sbjct: 132 INACLRRFLRER-DALVSATDNDPVAVWNHPAWWIARLQKDHPQ--DWQTILAANNAQPP 188
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+TLR+N +K++ Y L+ L+ T + ++L + + ++P F G+ S+QD AA
Sbjct: 189 MTLRVNAQKSSAAQYQNALQAMNLKATAVAECGLQLEQAVPVQELPHFEEGWASVQDGAA 248
Query: 122 QLAAPLLDIRSG------MYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMIS 172
Q AAPLL + VLDAC+APGGKT HLLE A I++ +++ + R I
Sbjct: 249 QAAAPLLLAGLPQPQGRPLRVLDACAAPGGKTAHLLERAAPGSIEVTALEIDPERARRID 308
Query: 173 ENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVV 232
E L RL LKA ++++D S + + + + FD IL D PCT SG+V
Sbjct: 309 ETLSRLGLKAKVLVADASA---PQAWFESQ---------CGGQPFDAILLDAPCTASGIV 356
Query: 233 RRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSK 292
RR PD+ WLRR++D+ +L+ ++L+ LW +L+PGG +++ TCS++ E + Q F
Sbjct: 357 RRQPDVRWLRRESDVAQLADIQSRLLDTLWPLLQPGGCMVYCTCSVFKAEGDAQMQAFLA 416
Query: 293 NHKDSIRLNSPGQLLPTVNKKQ---------DYDGFFYSLFQK 326
+ + L +PG L+P K D+DGFFY+L +K
Sbjct: 417 RNTTAASLPAPGHLIPGKAAKHDSVADNPLGDHDGFFYALLEK 459
>gi|294138832|ref|YP_003554810.1| ribosomal RNA small subunit methyltransferase B [Shewanella
violacea DSS12]
gi|293325301|dbj|BAJ00032.1| ribosomal RNA small subunit methyltransferase B [Shewanella
violacea DSS12]
Length = 425
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 119/333 (35%), Positives = 187/333 (56%), Gaps = 29/333 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++N +LR R++ K + +N P W + ++K YP W+ +++ H++P
Sbjct: 114 VVNGVLRNIQRQE----KPLPTDNDTLAFNTPSWIVKRLKAAYPE--NWQEVIEQSHQRP 167
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTII-GPLAIKLHTPISISKIPKFFNGFCSIQDA 119
P+ LR N+R T Y L + + + AI L +P ++++P F G S+QD
Sbjct: 168 PMWLRNNKRSQTRDEYLAALAEIDIPASAGKSSDAILLESPRDVAQLPGFDQGAASVQDG 227
Query: 120 AAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLN 179
AAQ AA LL + G VLDAC+APGGKTCHLLE+A+I+L++VD + RL + +NL RL+
Sbjct: 228 AAQWAATLLAPKDGELVLDACAAPGGKTCHLLELANIQLVAVDFDEKRLERVQQNLDRLS 287
Query: 180 LKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIP 239
L A L+ D + I+ +++ FDRIL D PC+ +GV+RR+PDI
Sbjct: 288 LDAKLVHGDAADID----------------SWWQGDKFDRILLDAPCSATGVIRRHPDIK 331
Query: 240 WLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIR 299
WLR+++DI +L+ KIL++ W+ LKPGG LL+ TCS+ +E+E+Q F + D+
Sbjct: 332 WLRKQSDIDELAALQSKILDHCWQWLKPGGTLLYATCSILPQENEQQIRSFLERADDATL 391
Query: 300 LNSPGQLLPT------VNKKQDYDGFFYSLFQK 326
+ Q P ++ DGF+Y+ K
Sbjct: 392 IPISEQPHPDDIGWQITPGTENMDGFYYARLVK 424
>gi|262040752|ref|ZP_06013983.1| RNA methyltransferase Sun [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259041896|gb|EEW42936.1| RNA methyltransferase Sun [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 431
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 122/339 (35%), Positives = 196/339 (57%), Gaps = 36/339 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + HE+ + +P W + +++ +P QW+ I++ +++P
Sbjct: 117 LINGVLRQFQRQQEALLAE--FAEHENRYLHPKWLLKRLQQAWPE--QWQEIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLE--TTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + + LL ++GLE T P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRNHHSRDEWLALLNEAGLEGFTHPDYPDAVRLATPAPVHALPGFAEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L +G +LD C+APGGKT H+LE+A ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMRYLQPENGERILDLCAAPGGKTTHILEVAPQAQVMAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KA + K+ + RF ++ N+ FDRIL D PC+ +GV+RR+
Sbjct: 293 LGVKAEV------------------KQGDGRFPEQWCGNEQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +ILN W LKPGG L++ TCS+ EE+ +Q F
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILNATWAHLKPGGTLVYATCSILPEENSQQIAAFLARTP 394
Query: 296 DSI-----RLNSPGQL-LPTVNKKQDYDGFFYSLFQKRK 328
D+ SPGQ LP V ++ DGFFY+ KR+
Sbjct: 395 DAELHATGTPASPGQQNLPGV---EEGDGFFYAKLIKRR 430
>gi|365972378|ref|YP_004953939.1| ribosomal RNA small subunit methyltransferase B [Enterobacter
cloacae EcWSU1]
gi|365751291|gb|AEW75518.1| Ribosomal RNA small subunit methyltransferase B [Enterobacter
cloacae EcWSU1]
Length = 438
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 118/331 (35%), Positives = 193/331 (58%), Gaps = 32/331 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + E+ + +P W +N++K +P QW+ I D +++P
Sbjct: 126 LINGVLRQFQRQQEELLAE--FGQSEARYLHPDWLLNRLKKAWPE--QWQAIADANNQRP 181
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLE--TTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T ++ LL+++G+ T P A++L +P + +P F G+ ++QD
Sbjct: 182 PMWLRVNRNHHTRDAWLALLEEAGMSGFTHEAYPDAVRLASPAPVHALPGFDEGWVTVQD 241
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L+ ++G ++LD C+APGGKT H+LE+A +++VD + RL+ + +NLKR
Sbjct: 242 ASAQRCMAWLEPKNGEHILDLCAAPGGKTTHILEVAPQANVMAVDVDEQRLSRVYDNLKR 301
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L +KA + D K + FDRIL D PC+ +GV+RR+PD
Sbjct: 302 LGMKAQVKQGDGRKPA----------------EWCGETQFDRILLDAPCSATGVIRRHPD 345
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR DIK+L++ IL+ +W LKPGG L++ TCS+ EE+ +Q F K D+
Sbjct: 346 IKWLRRDRDIKELTQLQSDILDAIWPHLKPGGTLVYATCSVLPEENSQQIAAFLKRTPDA 405
Query: 298 IRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
+ ++ PG Q LP ++ DGFFY+
Sbjct: 406 VLHDTGTPERPGLQNLPAA---EEGDGFFYA 433
>gi|323496958|ref|ZP_08101986.1| 16S rRNA methyltransferase B [Vibrio sinaloensis DSM 21326]
gi|323318032|gb|EGA71015.1| 16S rRNA methyltransferase B [Vibrio sinaloensis DSM 21326]
Length = 426
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 117/335 (34%), Positives = 195/335 (58%), Gaps = 30/335 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR +LR + E K + + + +P W +N ++ YP QW+ ++D + K
Sbjct: 113 LINAVLRSYLRDQ-EALDEKAVSHNAGKYGHPNWLLNMLRENYPE--QWEQLVDANNSKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTII--GPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N++ T Y +LLK +E ++ AIKL +P ++ +P F G+ S+QD
Sbjct: 170 PMWLRVNRQHHTRDEYLELLKDENIEFSVHPEASDAIKLASPCDVTLLPGFDRGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQL+ L + G +LD C+APGGKT H+LE D +++++D ++ RL+ + +NL+R
Sbjct: 230 AAAQLSVNYLQPQDGELILDCCAAPGGKTAHILEHTEDTEVVAIDCDVKRLDRVYDNLER 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L+A +I D ++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 290 LQLRADVICGDARYPQ----------------EWWSGEKFDRILLDAPCSATGVIRRHPD 333
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR NDI L++ +I++ +W LK GG +++ TCS+ +E+ Q F + +++
Sbjct: 334 IKWLRRANDIDALAELQSEIMDAMWGQLKDGGTMVYATCSITPQENILQVKAFLERTQNA 393
Query: 298 IRLNS----PG-QLLPTVNKKQDYDGFFYSLFQKR 327
+ S PG Q+LP ++D DGF+Y++ K+
Sbjct: 394 TLVGSDIENPGRQILPG---EEDMDGFYYAVLVKQ 425
>gi|288933298|ref|YP_003437357.1| sun protein [Klebsiella variicola At-22]
gi|288888027|gb|ADC56345.1| sun protein [Klebsiella variicola At-22]
Length = 431
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 121/338 (35%), Positives = 196/338 (57%), Gaps = 34/338 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + HE+ + +P W + +++ +P QW+ I+D +++P
Sbjct: 117 LINGVLRQFQRQQEALLVE--FAEHENRYLHPKWLLKRLQQAWPQ--QWQEIVDANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLE--TTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + + LLK++GLE T P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRNHHSRDEWLALLKEAGLEGFTHPDYPDAVRLATPAPVHALPGFAEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L +G +LD C+APGGKT H+LE+A ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMRYLLPENGERILDLCAAPGGKTTHILEVAPQAQVMAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KA + K+ + RF ++ N+ FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKAEV------------------KQGDGRFPEQWCGNEQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +ILN W+ LKPGG L++ TCS+ EE+ +Q F
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILNATWEHLKPGGTLVYATCSILPEENSQQISAFLARTP 394
Query: 296 DSI-----RLNSPGQLLPTVNKKQDYDGFFYSLFQKRK 328
D+ SPGQ + ++ DGFFY+ KR+
Sbjct: 395 DAELHATGTPASPGQQ--NLPGPEEGDGFFYAKLIKRR 430
>gi|290512100|ref|ZP_06551468.1| ribosomal RNA small subunit methyltransferase B [Klebsiella sp.
1_1_55]
gi|289775890|gb|EFD83890.1| ribosomal RNA small subunit methyltransferase B [Klebsiella sp.
1_1_55]
Length = 431
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 121/338 (35%), Positives = 196/338 (57%), Gaps = 34/338 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + HE+ + +P W + +++ +P QW+ I+D +++P
Sbjct: 117 LINGVLRQFQRQQEALLVE--FAEHENRYLHPKWLLKRLQQAWPQ--QWQEIVDANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLE--TTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + + LLK++GLE T P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRNHHSRDEWLALLKEAGLEGFTHPDYPDAVRLATPAPVHALPGFAEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L +G +LD C+APGGKT H+LE+A ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMRYLLPENGERILDLCAAPGGKTTHILEVAPQAQVMAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KA + K+ + RF ++ N+ FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKAEV------------------KQGDGRFPEQWCGNEQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +ILN W+ LKPGG L++ TCS+ EE+ +Q F
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILNATWEHLKPGGTLVYATCSILPEENSQQISAFLARTP 394
Query: 296 DSI-----RLNSPGQLLPTVNKKQDYDGFFYSLFQKRK 328
D+ SPGQ + ++ DGFFY+ KR+
Sbjct: 395 DAELHATGTPASPGQQ--NLPGPEEGDGFFYAKLIKRR 430
>gi|255020224|ref|ZP_05292293.1| Ribosomal RNA small subunit methyltransferase B [Acidithiobacillus
caldus ATCC 51756]
gi|340780760|ref|YP_004747367.1| ribosomal RNA small subunit methyltransferase B [Acidithiobacillus
caldus SM-1]
gi|254970366|gb|EET27859.1| Ribosomal RNA small subunit methyltransferase B [Acidithiobacillus
caldus ATCC 51756]
gi|340554913|gb|AEK56667.1| Ribosomal RNA small subunit methyltransferase B [Acidithiobacillus
caldus SM-1]
Length = 443
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 119/331 (35%), Positives = 189/331 (57%), Gaps = 30/331 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR +LR++ + + I +++WN+P W + +++ YP QW +IL ++
Sbjct: 114 LVNALLRRYLREREPLEE----QIRDAHWNHPQWLVRRLQQVYPT--QWPDILAANLREA 167
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
PL LR+N + T +Y + L ++ L P A++L T + + +P + G+ SIQD
Sbjct: 168 PLWLRVNPQAITPAAYAERLAEASLPAQSHAGLPEALRLDTAVPVRALPGWERGWVSIQD 227
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRL 178
AAQ AA +L R VLDAC+APGGKT HLL +L ++D + +RL + L+RL
Sbjct: 228 GAAQRAAHILAPRPDERVLDACAAPGGKTTHLLSFGVRQLTALDRSQARLERLRRELQRL 287
Query: 179 NLK-ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L +L ++D + ++ ++ FD IL D PCT SGV+RR+PD
Sbjct: 288 QLPLPSLHVADAADVDA----------------WWDGMVFDAILLDAPCTASGVIRRHPD 331
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I RR++D++++ ++L LW++LKPGG+LL+ TCS+ EE+ EQ F + H D+
Sbjct: 332 ILLRRREDDVERVRHEQRRLLAALWRVLKPGGRLLYCTCSVLPEENGEQIASFLEEHDDA 391
Query: 298 IRLNSP--GQLLPTVNKKQDYDGFFYSLFQK 326
L P GQ LP ++ DGFFY+L K
Sbjct: 392 RALPHPQCGQRLPG---EEGMDGFFYALLGK 419
>gi|385333483|ref|YP_005887434.1| rRNA SAM-dependent methyltransferase [Marinobacter adhaerens HP15]
gi|311696633|gb|ADP99506.1| Fmu, rRNA SAM-dependent methyltransferase [Marinobacter adhaerens
HP15]
Length = 426
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 115/340 (33%), Positives = 191/340 (56%), Gaps = 40/340 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++N +LR R+ + + +++P+W + +++ +P W +ILD + +
Sbjct: 110 LVNGVLRAAEREGAQEPADDA-----ARFSHPVWMVEKLRHNWPE--NWHHILDANNAQA 162
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLET--TIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+TLR+N + Y LL ++G+E T P I+L TP+ + ++P F +G S+QD
Sbjct: 163 PMTLRVNALRFARDEYLGLLAEAGIEAKATRFAPHGIQLATPVPVDRLPWFADGAVSVQD 222
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQL L+D+ G VLDAC+APGGKTC +LE +++++D + RL + ENL
Sbjct: 223 EAAQLCTTLMDLAPGQRVLDACAAPGGKTCAILESCGELAEVVAIDESADRLPRVQENLD 282
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL+L ATL +D + + +++ + FDRIL D+PC+ SGV+RR+P
Sbjct: 283 RLDLNATLKQADAAATD----------------QWWDGEAFDRILLDVPCSASGVIRRHP 326
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI LRR++DI L+ +L+ +W +LKPGG+L++ TCS++ +E+ F K D
Sbjct: 327 DIKLLRRESDITPLAAIQLGLLDAMWAILKPGGRLVYATCSVFPQENHRIIQRFCKQQTD 386
Query: 297 SI----------RLNSPGQLLPTVNKKQDYDGFFYSLFQK 326
+I + + QLLP + +DGFFY++ +K
Sbjct: 387 AILVEPEAQWGRDMGAGRQLLPDPDS---HDGFFYAVLEK 423
>gi|238896785|ref|YP_002921530.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|402778717|ref|YP_006634263.1| ribosomal RNA small subunit methyltransferase B [Klebsiella
pneumoniae subsp. pneumoniae 1084]
gi|238549112|dbj|BAH65463.1| 16S rRNA m5C967 methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|402539671|gb|AFQ63820.1| Ribosomal RNA small subunit methyltransferase B [Klebsiella
pneumoniae subsp. pneumoniae 1084]
Length = 431
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 122/339 (35%), Positives = 196/339 (57%), Gaps = 36/339 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + HE+ + +P W + +++ +P QW+ I++ +++P
Sbjct: 117 LINGVLRQFQRQQEALLAE--FAEHENRYLHPKWLLKRLQQAWPQ--QWQEIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLE--TTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + + LL ++GLE T P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRNHHSRDEWLALLNETGLEGFTHPDYPDAVRLATPAPVHALPGFAEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L +G +LD C+APGGKT H+LE+A ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMRYLQPENGERILDLCAAPGGKTTHILEVAPQAQVMAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KA + K+ + RF ++ N+ FDRIL D PC+ +GV+RR+
Sbjct: 293 LGVKAEV------------------KQGDGRFPEQWCGNEQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +ILN W LKPGG L++ TCS+ EE+ +Q F
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILNATWTHLKPGGTLVYATCSILPEENSQQIAAFLARTP 394
Query: 296 DSI-----RLNSPGQL-LPTVNKKQDYDGFFYSLFQKRK 328
D+ SPGQ LP V ++ DGFFY+ KR+
Sbjct: 395 DAELHATGTPASPGQQNLPGV---EEGDGFFYAKLIKRR 430
>gi|425074591|ref|ZP_18477694.1| ribosomal RNA small subunit methyltransferase B [Klebsiella
pneumoniae subsp. pneumoniae WGLW1]
gi|425085227|ref|ZP_18488320.1| ribosomal RNA small subunit methyltransferase B [Klebsiella
pneumoniae subsp. pneumoniae WGLW3]
gi|405596056|gb|EKB69426.1| ribosomal RNA small subunit methyltransferase B [Klebsiella
pneumoniae subsp. pneumoniae WGLW1]
gi|405608642|gb|EKB81593.1| ribosomal RNA small subunit methyltransferase B [Klebsiella
pneumoniae subsp. pneumoniae WGLW3]
Length = 431
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 122/339 (35%), Positives = 196/339 (57%), Gaps = 36/339 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + HE+ + +P W + +++ +P QW+ I++ +++P
Sbjct: 117 LINGVLRQFQRQQEALLAE--FAEHENRYLHPKWLLKRLQQAWPQ--QWQEIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLE--TTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + + LL ++GLE T P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRNHHSRDEWLALLNETGLEGFTHPDYPDAVRLATPAPVHALPGFAEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L +G +LD C+APGGKT H+LE+A ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMRYLQPENGERILDLCAAPGGKTTHILEVAPQAQVMAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KA + K+ + RF ++ N+ FDRIL D PC+ +GV+RR+
Sbjct: 293 LGVKADV------------------KQGDGRFPEQWCGNEQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +ILN W LKPGG L++ TCS+ EE+ +Q F
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILNATWTHLKPGGTLVYATCSILPEENSQQIAAFLARTP 394
Query: 296 DSI-----RLNSPGQL-LPTVNKKQDYDGFFYSLFQKRK 328
D+ SPGQ LP V ++ DGFFY+ KR+
Sbjct: 395 DAELHATGTPASPGQQNLPGV---EEGDGFFYAKLIKRR 430
>gi|417851636|ref|ZP_12497339.1| 16S rRNA methyltransferase B [Pasteurella multocida subsp.
gallicida str. Anand1_poultry]
gi|338218861|gb|EGP04588.1| 16S rRNA methyltransferase B [Pasteurella multocida subsp.
gallicida str. Anand1_poultry]
Length = 446
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 127/341 (37%), Positives = 195/341 (57%), Gaps = 39/341 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
++N +LR FLR++ E K+ + +W+ +P W +N++K YPN W+ I++ +
Sbjct: 127 LVNGVLRRFLREQ-ETLLVKV----DKHWHTLHPDWLVNRLKEAYPN---WREIVEANNH 178
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLETT-IIGPLAIKLHTPISISKIPKFFNGFCSIQ 117
KPP+ LR+NQ+K + +Y+ LL + G+E P A++L P+++S++P F G S+Q
Sbjct: 179 KPPMWLRVNQQKNSTETYHTLLAEQGIEAEKADNPCALRLLQPVAVSQLPAFHEGAVSVQ 238
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
DA AQ +A LL +G +LDAC+APGGKT H+LE A ++++D +RL + ENL
Sbjct: 239 DANAQWSALLLAPENGELILDACAAPGGKTTHILEQAPQAHVVALDVEATRLKRVHENLA 298
Query: 177 RLNLKATLILSDISKIN--LKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRR 234
R+ +AT+I D ++ LK+L + FDRIL D PC+ +GV+RR
Sbjct: 299 RMQQQATVICGDATQPAQWLKQLSESAVQ-------------FDRILLDAPCSATGVIRR 345
Query: 235 NPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH 294
+PDI WLR+ +DI L +IL LW +LKP G LL+ TCS+ EE+ Q F N+
Sbjct: 346 HPDIKWLRQASDISALVALQKQILQALWTVLKPNGILLYATCSVLPEENALQIEQFLTNN 405
Query: 295 KD---------SIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 326
D ++ Q LPT N DGF+Y+ +K
Sbjct: 406 VDAKLELLPFTAVEGAVGYQFLPTENGG---DGFYYAKLRK 443
>gi|238752659|ref|ZP_04614130.1| Ribosomal RNA small subunit methyltransferase B [Yersinia rohdei
ATCC 43380]
gi|238709086|gb|EEQ01333.1| Ribosomal RNA small subunit methyltransferase B [Yersinia rohdei
ATCC 43380]
Length = 429
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 120/331 (36%), Positives = 201/331 (60%), Gaps = 32/331 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + N ES++ +P W + ++K YP+ QW+ IL+ ++KP
Sbjct: 117 LINGVLRQFQRQQVELLERAANN--ESHYLHPSWLLARIKQAYPD--QWQQILEANNQKP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTI--IGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+++ + Y +LLK++ +E + P A++L TP S++ +P F G+ ++QD
Sbjct: 173 PMWLRVSRLHHSRSEYLELLKQADIEALPHDVYPDAVRLITPCSVNDLPGFDLGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LL ++G +LD C+APGGKT H+LE A +++VD + RL+ + ENL+R
Sbjct: 233 ASAQGCVDLLSPQNGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLSRVKENLQR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L A + + D +T + + N+ FDRIL D PC+ +GV+RR+PD
Sbjct: 293 LKLHADVRVGD--------------GRTPDEW--CGNQQFDRILLDAPCSATGVIRRHPD 336
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI +L++ +I+ +W LK GG +++ TCS+ EE+++Q F + H ++
Sbjct: 337 IKWLRRNSDIAELAQLQSEIIEAIWPKLKKGGVMVYATCSILPEENQQQIAAFLQRHSEA 396
Query: 298 IRL-----NSPG-QLLPTVNKKQDYDGFFYS 322
+ ++PG Q LP +D DGFFY+
Sbjct: 397 ELVETGTTSAPGRQNLP---HPEDGDGFFYA 424
>gi|344339700|ref|ZP_08770628.1| sun protein [Thiocapsa marina 5811]
gi|343800436|gb|EGV18382.1| sun protein [Thiocapsa marina 5811]
Length = 460
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 120/340 (35%), Positives = 188/340 (55%), Gaps = 36/340 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR FLR++ E + + W +P W +++++ +P +W+ I+ + +
Sbjct: 140 LVNALLRRFLRER-ETLLADVDREPAVRWLFPEWLLDRLRENWPQ--EWEQIVRTSNARA 196
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P++LR+N+ +T SY L +G+ I + + L P + ++P F G S+QD
Sbjct: 197 PMSLRVNRTRTDRRSYLGTLAAAGITARPIPGCEMGLTLDQPRATHELPGFEAGLVSVQD 256
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AQLAA LLD R G VLDAC+APGGKT +LE A+ + L+++DN +RL I E L
Sbjct: 257 GGAQLAADLLDARPGQRVLDACAAPGGKTAGILERAENRLDLLAIDNAPARLKSIRETLA 316
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A + L D ++ + K FDRIL D+PC+ +GV+RR+P
Sbjct: 317 RLGLSAEVALGDAAEPRGS----------------WSAKPFDRILLDVPCSATGVIRRHP 360
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLRR +DI L +IL+ W +L PGG+LL+ TCSL +E++ + F + H D
Sbjct: 361 DIKWLRRDSDIPALCALQDRILDAAWPLLAPGGRLLYATCSLIADENQHRIAAFLERHPD 420
Query: 297 S--IRLNSPG--------QLLPTVNKKQDYDGFFYSLFQK 326
+ + PG QLLP + DGF+++L ++
Sbjct: 421 ARECPIAVPGSRALSHGIQLLP---RDGANDGFYFALIER 457
>gi|283835706|ref|ZP_06355447.1| hypothetical protein CIT292_10098 [Citrobacter youngae ATCC 29220]
gi|291068385|gb|EFE06494.1| ribosomal RNA small subunit methyltransferase B [Citrobacter
youngae ATCC 29220]
Length = 429
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 120/333 (36%), Positives = 193/333 (57%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + + + +P W + ++K YP QW+ IL+ +++P
Sbjct: 117 LINGVLRQFQRRQEELLTE--FAQSDLRFLHPSWLVKRIKAAYPQ--QWEAILEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T ++ +LL ++GL P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRNHHTRDAWLELLAEAGLTGFPHPDYPDAVRLETPAPVLALPGFEQGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G +LD C+APGGKT H+LE+A +++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCVSYLQPQNGEQILDLCAAPGGKTTHILEVAPQANVMAVDVDEKRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ SGV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPQQWCGEQQFDRILLDAPCSASGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +ILN W LKPGG L++ TCS+ EE+++Q F
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILNATWTHLKPGGTLVYATCSILPEENQQQIAAFLARTP 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D++ + PG Q LP +D DGFFY+
Sbjct: 395 DAVLSETGTPEQPGRQNLPDA---EDGDGFFYA 424
>gi|425083465|ref|ZP_18486562.1| ribosomal RNA small subunit methyltransferase B [Klebsiella
pneumoniae subsp. pneumoniae WGLW2]
gi|405598666|gb|EKB71868.1| ribosomal RNA small subunit methyltransferase B [Klebsiella
pneumoniae subsp. pneumoniae WGLW2]
Length = 431
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 124/339 (36%), Positives = 200/339 (58%), Gaps = 36/339 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E F ++ + HE+ + +P W + +++ +P QW+ I++ +++P
Sbjct: 117 LINGVLRQFQRQQ-EAFLAE-FAEHENRYLHPKWLLKRLQQAWPQ--QWQEIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLE--TTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + + LL ++GLE T P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRNHHSRDEWLALLNETGLEGFTHPDYPDAVRLATPAPVHALPGFDEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L +G +LD C+APGGKT H+LE+A ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMRYLQPENGERILDLCAAPGGKTTHILEVAPQSQVMAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KA + K+ + RF ++ N+ FDRIL D PC+ +GV+RR+
Sbjct: 293 LGVKAEV------------------KQGDGRFPEQWCGNEQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +ILN +W LKPGG L++ TCS+ EE+ +Q F
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILNAIWGHLKPGGTLVYATCSILPEENSQQIAAFLARTP 394
Query: 296 DSI-----RLNSPGQL-LPTVNKKQDYDGFFYSLFQKRK 328
D+ SPGQ LP V ++ DGFFY+ KR+
Sbjct: 395 DAELHATGTPASPGQQNLPGV---EEGDGFFYAKLIKRR 430
>gi|295096932|emb|CBK86022.1| 16S rRNA m(5)C-967 methyltransferase [Enterobacter cloacae subsp.
cloacae NCTC 9394]
Length = 420
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 117/330 (35%), Positives = 194/330 (58%), Gaps = 30/330 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + E+ + +P W +N++K YP QW++I D +++P
Sbjct: 108 LINGVLRQFQRQQDELLAE--FAQSEARFLHPEWLLNRLKKAYPQ--QWQDIADANNQRP 163
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLE--TTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T ++ LL+++G+ T P A++L +P + +P F G+ ++QD
Sbjct: 164 PMWLRVNRNHHTRDAWLALLEEAGMSGFTHAAYPDAVRLASPALVHALPGFEEGWLTVQD 223
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L+ + G +LD C+APGGKT H+LE+A +++VD + RL+ + +NLKR
Sbjct: 224 ASAQGCMTWLEPKDGEQILDLCAAPGGKTTHILEVAPQASVMAVDVDEQRLSRVYDNLKR 283
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L +KA + D +K + + + FDRIL D PC+ +GV+RR+PD
Sbjct: 284 LGMKAQVKQGD-------------GRKPAD---WCGDTRFDRILLDAPCSATGVIRRHPD 327
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR DIK+L++ +IL+ +W LKPGG L++ TCS+ EE+ +Q F K D+
Sbjct: 328 IKWLRRDRDIKELAQLQSEILDAIWPHLKPGGTLVYATCSVLPEENSQQIAAFLKRTPDA 387
Query: 298 IRLNS-----PGQLLPTVNKKQDYDGFFYS 322
++ PG L + ++ DGFFY+
Sbjct: 388 TLHDTGTPEHPG--LQNLPGAEEGDGFFYA 415
>gi|429098214|ref|ZP_19160320.1| Ribosomal RNA small subunit methyltransferase B [Cronobacter
dublinensis 582]
gi|426284554|emb|CCJ86433.1| Ribosomal RNA small subunit methyltransferase B [Cronobacter
dublinensis 582]
Length = 462
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 118/333 (35%), Positives = 195/333 (58%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++GE+ + ++ + +P+W + +++ +P QW+ I++ +++P
Sbjct: 150 LINGVLRQFQRQQGELLAE--FAEQDARYLHPMWILKRLQAAWPQ--QWQAIVEANNERP 205
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N++ + + LL++SG+ I P A++L TP +S +P F G+ ++QD
Sbjct: 206 PMWLRVNRQHHSRDEWLSLLEESGMTGHIHPRYPDAVRLETPAPVSALPGFNQGWVTVQD 265
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LL ++G +LD C+APGGKT H+LE A +++VD + R++ + +NLKR
Sbjct: 266 ASAQGCVELLAPQNGETILDLCAAPGGKTTHILEAAPQAAVMAVDVDAQRISRVYDNLKR 325
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KA + + D RF ++ + FDRIL D PC+ +GV+RR+
Sbjct: 326 LRMKADVKVGD------------------GRFPAQWCGDTQFDRILLDAPCSATGVIRRH 367
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR +DI +L++ +IL+ +W LKPGG LL+ TCS+ EE+ EQ F
Sbjct: 368 PDIKWLRRDSDIAELAQLQSEILDAIWPHLKPGGTLLYATCSILPEENSEQIRAFLARTP 427
Query: 296 DSI-----RLNSPG-QLLPTVNKKQDYDGFFYS 322
D+ +PG Q LP + DGFFY+
Sbjct: 428 DAQLDGTGSAQTPGIQNLPGATEG---DGFFYA 457
>gi|167855267|ref|ZP_02478036.1| tryptophanyl-tRNA synthetase [Haemophilus parasuis 29755]
gi|167853631|gb|EDS24876.1| tryptophanyl-tRNA synthetase [Haemophilus parasuis 29755]
Length = 432
Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 128/339 (37%), Positives = 192/339 (56%), Gaps = 35/339 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
+ N +LR FLR++ I + +W +P W +N++K YPN W+ I+D ++
Sbjct: 116 LTNGVLRRFLREQEAILAKV-----DKHWQTLHPEWLVNKLKQAYPN---WREIVDANNQ 167
Query: 59 KPPLTLRINQRKTTLISYNKLL---KKSGLETTIIGP-LAIKLHTPISISKIPKFFNGFC 114
KPP+ +R+N ++T Y LL K+ E T P A+ L +S+S++P F G+
Sbjct: 168 KPPMWIRVNAQRTNRADYVALLGDLAKNHKEATACVPDCAVLLDKAVSVSQLPHFKQGWV 227
Query: 115 SIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISE 173
++QDA AQ +A LLD ++G +LDAC+APGGKT H+LE A K+I++D +RL + E
Sbjct: 228 AVQDAHAQWSAELLDAQNGELILDACAAPGGKTTHILEKAPQAKVIALDIEEARLVRVKE 287
Query: 174 NLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVR 233
NL RLN AT+I D S+ + FD+IL D PC+ +GV+R
Sbjct: 288 NLARLNQTATVICGDASQ---------------PEQWLTSGEMFDKILLDAPCSATGVIR 332
Query: 234 RNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKN 293
R+PDI WLR++ DI +L++ KIL LW LKP G LL+ TCS+ EE+ +Q F
Sbjct: 333 RHPDIKWLRKEEDIAELAELQGKILKALWARLKPNGVLLYATCSVLPEENSQQIQHFLAQ 392
Query: 294 HKDS--IRLNSPGQ--LLPTVNKKQD-YDGFFYSLFQKR 327
++ + +N G+ L+ KQD DGFFY+ K+
Sbjct: 393 TPEAKLVEINVGGEQCLMKQFFPKQDGGDGFFYAKLVKQ 431
>gi|425066439|ref|ZP_18469559.1| Ribosomal RNA small subunit methyltransferase B [Pasteurella
multocida subsp. gallicida P1059]
gi|404381457|gb|EJZ77930.1| Ribosomal RNA small subunit methyltransferase B [Pasteurella
multocida subsp. gallicida P1059]
Length = 446
Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 123/340 (36%), Positives = 196/340 (57%), Gaps = 37/340 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN-YPIWWINQVKITYPNFFQWKNILDVGHKK 59
++N +LR FLR++ ++ + + + ++ +P W +N++K YPN W+ I++ ++K
Sbjct: 127 LVNGVLRRFLREQ----ETLLVKVDKHWYTLHPDWLVNRLKEAYPN---WREIVEANNQK 179
Query: 60 PPLTLRINQRKTTLISYNKLLKKSGLETT-IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
PP+ LR+NQ+K + +Y LL + G+E P A++L P+++S++P F G S+QD
Sbjct: 180 PPMWLRVNQQKNSTETYRTLLAEQGIEAEKADNPCALRLLQPVAVSQLPAFHEGAVSVQD 239
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
AQ +A LL +G ++LDAC+APGGKT H+LE A ++++D +RL + ENL R
Sbjct: 240 VNAQWSALLLAPENGEFILDACAAPGGKTTHILEQAPQAHVVALDVEATRLKRVHENLAR 299
Query: 178 LNLKATLILSDISKIN--LKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRN 235
+ +AT+I D ++ LK+L + FDRIL D PC+ +GV+RR+
Sbjct: 300 MQQQATVICGDATQPAQWLKQLSESAVQ-------------FDRILLDAPCSATGVIRRH 346
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLR+ +DI L +IL LW +LKP G LL+ TCS+ EE+ Q F N+
Sbjct: 347 PDIKWLRQASDISALVTLQKQILQALWTVLKPNGILLYATCSVLPEENALQIEQFLTNNV 406
Query: 296 D---------SIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 326
D ++ + Q LPT N DGF+Y+ +K
Sbjct: 407 DAKLEPLPFTAVEGSVGYQFLPTENGG---DGFYYAKLRK 443
>gi|378980997|ref|YP_005229138.1| RNA methyltransferase Sun [Klebsiella pneumoniae subsp. pneumoniae
HS11286]
gi|419976857|ref|ZP_14492244.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|419982567|ref|ZP_14497822.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|419988191|ref|ZP_14503292.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|419993958|ref|ZP_14508886.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|419999776|ref|ZP_14514542.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|420005619|ref|ZP_14520235.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|420011346|ref|ZP_14525800.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|420017347|ref|ZP_14531622.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|420022826|ref|ZP_14536983.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|420028606|ref|ZP_14542577.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|420034490|ref|ZP_14548274.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|420040098|ref|ZP_14553715.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|420045877|ref|ZP_14559334.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|420051694|ref|ZP_14564972.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|420057360|ref|ZP_14570499.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|420062800|ref|ZP_14575761.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|420068812|ref|ZP_14581581.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|420074858|ref|ZP_14587443.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|420080298|ref|ZP_14592725.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|420085445|ref|ZP_14597669.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|421911832|ref|ZP_16341577.1| Ribosomal RNA small subunit methyltransferase B [Klebsiella
pneumoniae subsp. pneumoniae ST258-K26BO]
gi|421914247|ref|ZP_16343896.1| Ribosomal RNA small subunit methyltransferase B [Klebsiella
pneumoniae subsp. pneumoniae ST258-K28BO]
gi|428149696|ref|ZP_18997510.1| Ribosomal RNA small subunit methyltransferase B [Klebsiella
pneumoniae subsp. pneumoniae ST512-K30BO]
gi|364520408|gb|AEW63536.1| RNA methyltransferase Sun [Klebsiella pneumoniae subsp. pneumoniae
HS11286]
gi|397339578|gb|EJJ32818.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|397340043|gb|EJJ33260.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|397341671|gb|EJJ34846.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|397357339|gb|EJJ50101.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|397357359|gb|EJJ50120.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|397360910|gb|EJJ53580.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|397373704|gb|EJJ66100.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|397376064|gb|EJJ68334.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|397382796|gb|EJJ74951.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|397391379|gb|EJJ83234.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|397392511|gb|EJJ84303.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|397400475|gb|EJJ92117.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|397408716|gb|EJK00067.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|397408823|gb|EJK00168.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|397419611|gb|EJK10751.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|397425860|gb|EJK16721.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|397427176|gb|EJK17961.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|397432468|gb|EJK23127.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|397441933|gb|EJK32298.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|397449161|gb|EJK39307.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|410114034|emb|CCM84202.1| Ribosomal RNA small subunit methyltransferase B [Klebsiella
pneumoniae subsp. pneumoniae ST258-K26BO]
gi|410123395|emb|CCM86521.1| Ribosomal RNA small subunit methyltransferase B [Klebsiella
pneumoniae subsp. pneumoniae ST258-K28BO]
gi|427540456|emb|CCM93648.1| Ribosomal RNA small subunit methyltransferase B [Klebsiella
pneumoniae subsp. pneumoniae ST512-K30BO]
Length = 431
Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 122/339 (35%), Positives = 197/339 (58%), Gaps = 36/339 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + HE+ + +P W + +++ +P QW+ I++ +++P
Sbjct: 117 LINGVLRQFQRQQEALLAE--FAEHENRYLHPKWLLKRLQQAWPE--QWQEIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLE--TTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + + LL ++GLE T P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRNHHSRDEWLALLNEAGLEGFTHPDYPDAVRLATPAPVHALPGFDEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G +LD C+APGGKT H+LE+A ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMRYLQPKNGERILDLCAAPGGKTTHILEVAPQSQVMAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KA + K+ + RF ++ N+ FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKAEV------------------KQGDGRFPEQWCGNEQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +ILN W LKPGG L++ TCS+ EE+ +Q F
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILNATWAHLKPGGTLVYATCSILPEENGQQIAAFLARTP 394
Query: 296 DSI-----RLNSPGQL-LPTVNKKQDYDGFFYSLFQKRK 328
D+ SPGQ LP V ++ DGFFY+ KR+
Sbjct: 395 DAELHATGTPASPGQQNLPGV---EEGDGFFYAKLIKRR 430
>gi|358451495|ref|ZP_09161928.1| sun protein [Marinobacter manganoxydans MnI7-9]
gi|357223964|gb|EHJ02496.1| sun protein [Marinobacter manganoxydans MnI7-9]
Length = 433
Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 115/340 (33%), Positives = 191/340 (56%), Gaps = 40/340 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++N +LR R+ + +++P+W + +++ +P W++ILD + +
Sbjct: 117 LVNGVLRAAEREGAPEPADDA-----ARFSHPVWMVEKLRHNWPE--DWQHILDANNAQA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLET--TIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+TLR+N + Y LL ++G+E T P I+L TP+ + ++P F +G S+QD
Sbjct: 170 PMTLRVNALRFARDEYLGLLAEAGIEAKATRFAPHGIQLATPVPVDRLPWFADGAVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQL L+D+ G VLDAC+APGGKTC +LE +++++D + RL + ENL
Sbjct: 230 EAAQLCTTLMDLAPGQRVLDACAAPGGKTCAILEGCGKLAEVVAIDESADRLPRVQENLD 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL+L ATL +D + + +++ + FDRIL D+PC+ SGV+RR+P
Sbjct: 290 RLDLNATLKQADAAATD----------------QWWDGEAFDRILLDVPCSASGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI LRR++DI L+ +L+ +W +LKPGG+L++ TCS++ +E+ F K D
Sbjct: 334 DIKLLRRESDITPLAAIQLGLLDAMWAILKPGGRLVYATCSVFPQENHRIIQRFCKQQTD 393
Query: 297 SI----------RLNSPGQLLPTVNKKQDYDGFFYSLFQK 326
+I + + QLLP + +DGFFY++ +K
Sbjct: 394 AILVEPEAQWGRDMGAGRQLLPDPDS---HDGFFYAVLEK 430
>gi|424931495|ref|ZP_18349867.1| Ribosomal RNA small subunit methyltransferase B [Klebsiella
pneumoniae subsp. pneumoniae KpQ3]
gi|407805682|gb|EKF76933.1| Ribosomal RNA small subunit methyltransferase B [Klebsiella
pneumoniae subsp. pneumoniae KpQ3]
Length = 431
Score = 217 bits (553), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 122/339 (35%), Positives = 197/339 (58%), Gaps = 36/339 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + HE+ + +P W + +++ +P QW+ I++ +++P
Sbjct: 117 LINGVLRQFQRQQEALLAE--FAEHENRYLHPKWLLKRLQQAWPE--QWQEIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLE--TTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + + LL ++GLE T P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRNHHSRDEWLALLNEAGLEGFTHPDYPDAVRLATPAPVHALPGFDEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G +LD C+APGGKT H+LE+A ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMRYLQPKNGERILDLCAAPGGKTTHILEVAPQSQVMAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KA + K+ + RF ++ N+ FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKAEV------------------KQGDGRFPEQWCGNEQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +ILN W LKPGG L++ TCS+ EE+ +Q F
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILNATWTHLKPGGTLVYATCSILPEENGQQIAAFLARTP 394
Query: 296 DSI-----RLNSPGQL-LPTVNKKQDYDGFFYSLFQKRK 328
D+ SPGQ LP V ++ DGFFY+ KR+
Sbjct: 395 DAELHATGTPASPGQQNLPGV---EEGDGFFYAKLIKRR 430
>gi|343499313|ref|ZP_08737296.1| 16S rRNA methyltransferase B [Vibrio tubiashii ATCC 19109]
gi|418479410|ref|ZP_13048492.1| 16S rRNA methyltransferase B [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
gi|342823188|gb|EGU57844.1| 16S rRNA methyltransferase B [Vibrio tubiashii ATCC 19109]
gi|384572921|gb|EIF03425.1| 16S rRNA methyltransferase B [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
Length = 426
Score = 217 bits (553), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 118/336 (35%), Positives = 199/336 (59%), Gaps = 34/336 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR +LR++ E+ K + + + +P W +N ++ +YP QW+ +++ + K
Sbjct: 113 LINAVLRSYLREQEEL-DEKAVSHNAGKYGHPNWLLNMLRDSYPE--QWEQLVEANNSKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTII--GPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N++ T Y +LLK +E +I AIKL +P ++ +P F G+ S+QD
Sbjct: 170 PMWLRVNRQHHTRDEYLELLKDENIECSIHPEAADAIKLASPCDVTLLPGFDRGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQL+ L ++G +LD C+APGGKT H+LE D +++++D + RL+ + +NL+R
Sbjct: 230 AAAQLSVNYLQPQNGELILDCCAAPGGKTAHILEHTEDTEVVAIDCDAKRLDRVYDNLER 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L L+A +I D R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 290 LQLRADVICGDA------------------RYPQEWWTGEKFDRILLDAPCSATGVIRRH 331
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR NDI L++ +I++ +W LK GG +++ TCS+ +E+ Q F +
Sbjct: 332 PDIKWLRRANDIDALAELQSEIMDAMWSQLKVGGTMVYATCSITPKENVLQVKAFLERTD 391
Query: 296 DSI----RLNSPG-QLLPTVNKKQDYDGFFYSLFQK 326
++ +N+PG Q+LP ++D DGF+Y++ K
Sbjct: 392 NATLVGSDINNPGRQILPG---EEDMDGFYYAVLIK 424
>gi|417822209|ref|ZP_12468811.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HE48]
gi|340049822|gb|EGR10734.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HE48]
Length = 426
Score = 217 bits (553), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 117/335 (34%), Positives = 193/335 (57%), Gaps = 30/335 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R + E ++ + + +P W + +K +Y QW+ I++ + K
Sbjct: 113 LINAVLRNYQRDQ-EGLDAQATSHDAGRYGHPGWLLKLLKESYQE--QWQQIVEANNSKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + T Y LL+++G+ TT A+ L TP + ++P F G+ S+QD
Sbjct: 170 PMWLRVNHQHHTRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQLA L ++G +LD C+APGGKT H+LE + +++++D + +RL + ENL+R
Sbjct: 230 AAAQLALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQR 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L A +I D ++++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 290 LQLTAQVICGDARYPQ----------------QWWQGEQFDRILLDAPCSATGVIRRHPD 333
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI L++ +IL+ +W+ LKPGG L++ TCS+ +E+ Q F + D+
Sbjct: 334 IKWLRRADDIAALAELQREILDAMWQQLKPGGSLVYATCSITPQENRLQVKAFLERTPDA 393
Query: 298 IRLNS----PG-QLLPTVNKKQDYDGFFYSLFQKR 327
+ S PG Q+LP ++ DGF+Y++ K+
Sbjct: 394 RLVGSDPAQPGRQILPG---EEAMDGFYYAVLSKQ 425
>gi|338999390|ref|ZP_08638037.1| Sun protein [Halomonas sp. TD01]
gi|338763719|gb|EGP18704.1| Sun protein [Halomonas sp. TD01]
Length = 444
Score = 217 bits (552), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 121/342 (35%), Positives = 186/342 (54%), Gaps = 36/342 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++N LR R+ E+ ++ + +P W +N + +P QW+ I + ++
Sbjct: 122 VLNGCLRRLQRESDEL-QAAVDRDESVALEHPPWLLNALHSAWPE--QWRAIAEANNEPG 178
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTII--GPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+TLR+NQR +Y + L + GL + P I L P ++ +P F G S+QD
Sbjct: 179 PMTLRVNQRHNDREAYLQQLTEQGLSGHLCLHAPDGITLDAPCDVTILPGFEEGHVSVQD 238
Query: 119 AAAQLAA----PLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISEN 174
AAQL+A P L R G +VLDAC APGGKT HLLE D+ L ++D++ RL + +
Sbjct: 239 EAAQLSAALLGPALAPRPGAHVLDACCAPGGKTAHLLEQFDVALTAIDSDNQRLGRVDDT 298
Query: 175 LKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRR 234
L RL L A L +D ++ + ++ FD IL D PC+G+GV+RR
Sbjct: 299 LNRLGLTAELQHADATQQD-----------------WWNGTSFDAILLDAPCSGTGVIRR 341
Query: 235 NPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH 294
+PDI LRRK DI++L+K ++L+NLW +L+PGG LL+ TCS+ EE+ EQ F
Sbjct: 342 HPDIKKLRRKEDIRQLAKLQRQLLDNLWSLLRPGGTLLYATCSVLPEENAEQIDAFLART 401
Query: 295 KDSIRLNSPGQLL---PTVNKKQ------DYDGFFYSLFQKR 327
D+ ++ +P + P+ +Q +DGFFY+ +KR
Sbjct: 402 PDA-KVTTPNDVAWGEPSGQGRQLFPAQSSHDGFFYARLEKR 442
>gi|386036821|ref|YP_005956734.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae KCTC 2242]
gi|424832658|ref|ZP_18257386.1| ribosomal RNA small subunit methyltransferase B [Klebsiella
pneumoniae subsp. pneumoniae Ecl8]
gi|425093580|ref|ZP_18496664.1| ribosomal RNA small subunit methyltransferase B [Klebsiella
pneumoniae subsp. pneumoniae WGLW5]
gi|339763949|gb|AEK00170.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae KCTC 2242]
gi|405610555|gb|EKB83350.1| ribosomal RNA small subunit methyltransferase B [Klebsiella
pneumoniae subsp. pneumoniae WGLW5]
gi|414710101|emb|CCN31805.1| ribosomal RNA small subunit methyltransferase B [Klebsiella
pneumoniae subsp. pneumoniae Ecl8]
Length = 431
Score = 217 bits (552), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 119/339 (35%), Positives = 197/339 (58%), Gaps = 36/339 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + HE+ + +P W + +++ +P QW+ I++ +++P
Sbjct: 117 LINGVLRQFQRQQEALLAE--FAEHENRYLHPKWLLKRLQQAWPE--QWQEIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLE--TTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + + LL ++GLE T P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRNHHSRDEWLALLNETGLEGFTHPDYPDAVRLATPAPVHALPGFAEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L +G +LD C+APGGKT H+LE+A ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMRYLQPENGERILDLCAAPGGKTTHILEVAPQAQVMAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KA + K+ + RF ++ N+ FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKAEV------------------KQGDGRFPEQWCGNEQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +ILN +W LKPGG L++ TCS+ EE+ +Q F
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILNAIWGHLKPGGTLVYATCSILPEENSQQIAAFLARTP 394
Query: 296 DSIRLNSPGQLLPTVNKKQ------DYDGFFYSLFQKRK 328
D+ L++ G P + +Q + DGFFY+ KR+
Sbjct: 395 DA-ELHATG--TPAIPGQQNLPGAEEGDGFFYAKLIKRR 430
>gi|157372746|ref|YP_001480735.1| 16S rRNA methyltransferase B [Serratia proteamaculans 568]
gi|224493268|sp|A8GKG7.1|RSMB_SERP5 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|157324510|gb|ABV43607.1| sun protein [Serratia proteamaculans 568]
Length = 429
Score = 217 bits (552), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 114/330 (34%), Positives = 190/330 (57%), Gaps = 30/330 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + N +S + +P W + +++ YP QW+ I+D ++KP
Sbjct: 117 LINGVLRQFQRQQEELLQRAANN--DSRYLHPSWLLKRIQQAYP--AQWEQIIDANNQKP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T Y +L++++G+ A++L P +++ +P F +G+ ++QD
Sbjct: 173 PMWLRVNRLHHTREDYLQLMEQAGIAAEPHAEYRDAVRLLAPCAVTDLPGFADGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LLD + G +LD C+APGGKT H+LE A +++VD + RL + ENL+R
Sbjct: 233 ASAQGCVDLLDPQDGEQILDLCAAPGGKTTHILEAAPKAHVMAVDIDEQRLKRVKENLQR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L L A + K+ + R ++ +K FDRIL D PC+ +GV+RR+
Sbjct: 293 LRLHAEV------------------KQGDGRTPQQWCGDKQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR +DI +L+ +I+ +W LK GG +++ TCS+ E+ EQ F + H
Sbjct: 335 PDIKWLRRDSDIAELAALQAEIIEAIWPHLKSGGVMVYATCSILPAENAEQVSAFLQRHA 394
Query: 296 DSIRLNSPGQLLP---TVNKKQDYDGFFYS 322
D+ + + Q P + +D DGFFY+
Sbjct: 395 DARLVETGNQQQPGRQNLPHPEDGDGFFYA 424
>gi|304399258|ref|ZP_07381124.1| sun protein [Pantoea sp. aB]
gi|304353184|gb|EFM17565.1| sun protein [Pantoea sp. aB]
Length = 433
Score = 217 bits (552), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 115/330 (34%), Positives = 195/330 (59%), Gaps = 30/330 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++N +LR+F R++ E+ S + + + Y +P W + +++ +P QW+ I++ +++P
Sbjct: 117 LLNGVLRQFQRQREELLAS-IQDGPQRYL-HPGWLLKRLQHAWPE--QWQQIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+NQ+ ++ LL +SG P A++L P +S++P F G+ ++QD
Sbjct: 173 PMWLRVNQQHHERDAWLALLTESGRNAQPADDVPDALRLDAPAPVSQLPGFGQGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
+AQ A LL+ ++G +LD C+APGGKT H+LEIA + ++++VD + RL + ENL+R
Sbjct: 233 LSAQRCALLLEPQNGEQILDLCAAPGGKTTHILEIAPEAEVMAVDVDAQRLKRVEENLQR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KA + K+ + R ++ ++ FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKADV------------------KQGDGRTPQQWCGDRQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L+K +ILN +W LKPGG L++ TCS+ EE+ +Q F +
Sbjct: 335 PDIKWLRRDRDIAELAKLQSEILNAVWPHLKPGGTLIYATCSILPEENHQQIDAFLQRQH 394
Query: 296 DSIRL---NSPGQLLPTVNKKQDYDGFFYS 322
D+ + ++P L + + DGFFY+
Sbjct: 395 DAQAVPLRDAPANGLQVFPQAEGGDGFFYA 424
>gi|417854378|ref|ZP_12499684.1| 16S rRNA methyltransferase B [Pasteurella multocida subsp.
multocida str. Anand1_goat]
gi|338218068|gb|EGP03876.1| 16S rRNA methyltransferase B [Pasteurella multocida subsp.
multocida str. Anand1_goat]
Length = 446
Score = 217 bits (552), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 127/341 (37%), Positives = 196/341 (57%), Gaps = 39/341 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
++N +LR FLR++ E K+ + +W+ +P W +N++K YPN W+ I++ +
Sbjct: 127 LVNGVLRRFLREQ-ETLLVKV----DKHWHTLHPDWLVNRLKEAYPN---WREIVEANNH 178
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLETT-IIGPLAIKLHTPISISKIPKFFNGFCSIQ 117
KPP+ LR+NQ+K + +Y LL + G+E P A++L P+++S++P F G S+Q
Sbjct: 179 KPPMWLRVNQQKNSTETYRTLLAEQGIEAEKADNPCALRLLQPVAVSQLPAFHEGAVSVQ 238
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
D AQ +A LL +G ++LDAC+APGGKT H+LE A ++++D +RL + ENL
Sbjct: 239 DVNAQWSALLLAPENGEFILDACAAPGGKTTHILEQAPQAHVVALDVEATRLKRVHENLA 298
Query: 177 RLNLKATLILSDISKIN--LKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRR 234
R+ +AT+I D ++ LK+L + FDRIL D PC+ +GV+RR
Sbjct: 299 RMQQQATVICGDATQPAQWLKQLSESAVQ-------------FDRILLDAPCSATGVIRR 345
Query: 235 NPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH 294
+PDI WLR+ +DI L +IL LW +LKP G LL+ TCS+ EE+ Q F N+
Sbjct: 346 HPDIKWLRQASDISALVTLQKQILQALWTVLKPNGILLYATCSVLPEENALQIEQFLTNN 405
Query: 295 KDS--------IRLNSPG-QLLPTVNKKQDYDGFFYSLFQK 326
D+ + + G Q LPT N DGF+Y+ +K
Sbjct: 406 VDAKLEPLPFTVVEGAVGYQFLPTENGG---DGFYYAKLRK 443
>gi|156932266|ref|YP_001436182.1| 16S rRNA methyltransferase B [Cronobacter sakazakii ATCC BAA-894]
gi|224493253|sp|A7MPE7.1|RSMB_ENTS8 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|156530520|gb|ABU75346.1| hypothetical protein ESA_00037 [Cronobacter sakazakii ATCC BAA-894]
Length = 429
Score = 216 bits (551), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 117/333 (35%), Positives = 193/333 (57%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ ++ ++ W +P+W +N+ + +P +W+ +++ +++P
Sbjct: 117 LINGVLRQFQRQQDELLAE--FSGQDARWLHPMWLLNRFQTAWPR--EWQAVVEANNERP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N++ + + KLL+++G+ I P A++L P +S +P F G+ ++QD
Sbjct: 173 PMWLRVNRQHHSRDEWLKLLEENGMTGHIHPRYPDAVRLDAPAPVSALPGFEQGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LL ++G +LD C+APGGKT H+LE A +++VD + R++ + ENLKR
Sbjct: 233 ASAQGCVELLAPQNGETILDLCAAPGGKTTHILEAAPQASVMAVDVDAQRISRVYENLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KA + + D RF + FDRIL D PC+ +GV+RR+
Sbjct: 293 LKMKADVKVGD------------------GRFPSTWCGETQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR +DI +L++ +IL+ +W LKPGG LL+ TCS+ EE+ EQ F
Sbjct: 335 PDIKWLRRDSDINELAQLQSEILDAIWPHLKPGGTLLYATCSVLPEENSEQIRAFLSRTP 394
Query: 296 DSI-----RLNSPG-QLLPTVNKKQDYDGFFYS 322
D+ +PG Q LP + DGFFY+
Sbjct: 395 DAQLDGTGSTQTPGIQNLPGATEG---DGFFYA 424
>gi|422337239|ref|ZP_16418211.1| ribosomal RNA small subunit methyltransferase B [Aggregatibacter
aphrophilus F0387]
gi|353345791|gb|EHB90082.1| ribosomal RNA small subunit methyltransferase B [Aggregatibacter
aphrophilus F0387]
Length = 451
Score = 216 bits (551), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 125/343 (36%), Positives = 199/343 (58%), Gaps = 34/343 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR FLR++ I +K+ ++ +P W +N++K Y N W++I+D ++KP
Sbjct: 127 LVNAVLRRFLREQDGIL-AKVDKHRQTL--HPDWLVNKLKKVYAN---WRDIIDANNQKP 180
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG-PLAIKLHTPISISKIPKFFNGFCSIQDA 119
P+ LR+N +K TL +Y LL + +++ + P A+ L P ++ +P F +G ++QD
Sbjct: 181 PMWLRVNLQKNTLENYRTLLTEQQIDSQVTSHPQALGLAQPTAVQHLPCFADGGVTVQDL 240
Query: 120 AAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKRL 178
AQ AA LL ++G +LDAC+APGGKT H+LE+A ++I++D SRL + ENL +
Sbjct: 241 HAQWAALLLQPQNGELILDACAAPGGKTTHILELAPQAEVIALDVEESRLQRVKENLAHM 300
Query: 179 NLKATLILSDISKIN--LKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
+AT+I D ++ L KL K+ RF DRIL D PC+ +GV+RR+P
Sbjct: 301 QQQATVICGDAAQPQEWLAKL-----GKSAVRF--------DRILLDAPCSATGVIRRHP 347
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR++ DI +L +IL+ LW+ LKP G LL+ TCS+ EE+ Q F + D
Sbjct: 348 DIKWLRKETDIDQLVALQEQILHGLWQYLKPNGVLLYATCSVLAEENSRQISRFLQQTAD 407
Query: 297 S--IRLNSPGQLLPT---------VNKKQDYDGFFYSLFQKRK 328
+ + L P ++L + + DGF+Y+ KR+
Sbjct: 408 AELVELALPAEVLAQNQSAVGFQFIPQADGGDGFYYAKLVKRQ 450
>gi|240947872|ref|ZP_04752312.1| ribosomal RNA small subunit methyltransferase B [Actinobacillus
minor NM305]
gi|240297834|gb|EER48270.1| ribosomal RNA small subunit methyltransferase B [Actinobacillus
minor NM305]
Length = 444
Score = 216 bits (551), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 126/337 (37%), Positives = 190/337 (56%), Gaps = 41/337 (12%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
+ N +LR FLR++ I + +W +P W +N++K YPN W+ I++ ++
Sbjct: 125 LTNGVLRRFLREQETILAKV-----DKHWQTLHPEWLVNKLKKAYPN---WREIVEANNQ 176
Query: 59 KPPLTLRINQRKTTLISYNKLL----KKSGLETTIIGPLAIKLHTPISISKIPKFFNGFC 114
KPP+ +R+N + T Y LL K + T + AI L +S++++P F G+
Sbjct: 177 KPPMWIRVNTQHTNRADYIGLLGDLAKNTENATAYLPDCAIALDKAVSVNRLPHFEQGWA 236
Query: 115 SIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISE 173
++QDA AQ +A LLD ++G +LDAC+APGGKT H+LE A K+I++D +RL + E
Sbjct: 237 TVQDAHAQWSAELLDAQNGELILDACAAPGGKTTHILEKAPQAKVIALDIEEARLARVKE 296
Query: 174 NLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVR 233
NL RLN +AT+I D S+ + ++D FDRIL D PC+ +GV+R
Sbjct: 297 NLARLNQRATVICGDASQ---PEQWLD------------NGVMFDRILLDAPCSATGVIR 341
Query: 234 RNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKN 293
R+PDI WLR++ DI +L+ KILN LW LKP G LL+ TCS+ EE+ EQ F N
Sbjct: 342 RHPDIKWLRKEEDIAELAALQSKILNALWARLKPNGILLYATCSILPEENTEQIQQFIAN 401
Query: 294 HKDS--IRLNSPG------QLLPTVNKKQDYDGFFYS 322
++ + ++ G Q P + DGFFY+
Sbjct: 402 TPNAKLVEMDFHGEKMLEKQFFP---QNHGGDGFFYA 435
>gi|308047743|ref|YP_003911309.1| 16S rRNA m(5)C967 methyltransferase [Ferrimonas balearica DSM 9799]
gi|307629933|gb|ADN74235.1| 16S rRNA m(5)C-967 methyltransferase [Ferrimonas balearica DSM
9799]
Length = 441
Score = 216 bits (551), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 122/342 (35%), Positives = 193/342 (56%), Gaps = 36/342 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++N +LR R + +++ ++ ++ +P W+I +++ YP+ QW ILD ++ P
Sbjct: 117 LVNGVLRALDRDM-DALQAEQFDAPSVHYRHPGWFIKRLQQAYPD--QWAAILDANNEAP 173
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
PL LR N + + +Y + L +G+E + G AI+L P ++ +P F G S+QD
Sbjct: 174 PLWLRNNALQQSRDAYLQQLADAGVEA-VAGEEQEAIRLPKPRDVTGLPGFPKGAVSVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
+AQ++ LL+ + G VLDAC+APGGK+CH+LE +L+++D + RL + +NL
Sbjct: 233 HSAQISGRLLNAQPGERVLDACAAPGGKSCHILEQQPQLAELVALDVDPWRLTRVQQNLD 292
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L ATL D + ++ + FDRIL D PC+ +GV+RRNP
Sbjct: 293 RLGLTATLKCGD----------------GTDPQSWWDGQAFDRILLDAPCSATGVIRRNP 336
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
D WLRR DI +L++ KIL W+MLKPGG L++ TCS+ +E+ +Q F +N D
Sbjct: 337 DSKWLRRDEDIAQLAELQGKILRACWQMLKPGGTLVYATCSVLPDENVQQIQAFLQNTPD 396
Query: 297 SI--------RLNSPG-QLLPTVNKKQDYDGFFYSLFQKRKE 329
++ +PG QLLPTV DGF+Y+ KR++
Sbjct: 397 AMLDPIVAGEDDTTPGWQLLPTVEGG---DGFYYARLIKRQD 435
>gi|307262046|ref|ZP_07543700.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|306868225|gb|EFN00048.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
Length = 432
Score = 216 bits (551), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 129/338 (38%), Positives = 189/338 (55%), Gaps = 42/338 (12%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
+IN +LR FLR+K + N W +P W++N++K YPN W+ I+D ++
Sbjct: 116 LINGVLRRFLREKDSLLAKLDKN-----WQTLHPEWFVNKLKKAYPN---WREIIDANNQ 167
Query: 59 KPPLTLRINQRKTTLISYNKLL-----KKSGLETTIIGPLAIKLHTPISISKIPKFFNGF 113
+PP+ +R N ++ Y LL K S T + AI L P+ ++K+ F G+
Sbjct: 168 RPPMWIRSNIQRIKPQDYRVLLGDLVAKNSENMTACVPESAILLANPVPVNKLMNFEQGW 227
Query: 114 CSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMIS 172
++QDA AQ +A LL+ ++G +LDAC+APGGKT H+LE+A K+I++D SRL +
Sbjct: 228 ATVQDAHAQWSAALLEAQNGELILDACAAPGGKTTHILEVAPQAKVIALDIEESRLKRVR 287
Query: 173 ENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVV 232
ENL RL AT+I D SK ++D FDRIL D PC+ +GV+
Sbjct: 288 ENLARLGQTATVICGDASK---PAEWLD------------DGVMFDRILLDAPCSATGVI 332
Query: 233 RRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSK 292
RR+PDI WLR++NDI +L KIL LW LKP G L++ TCS+ EE+ EQ F
Sbjct: 333 RRHPDIKWLRKENDIAELVALQAKILEALWGRLKPNGVLVYATCSVLPEENGEQITRFVA 392
Query: 293 NHKDS--IRLNSPG------QLLPTVNKKQDYDGFFYS 322
+H D+ + ++ G Q P ++Q DGFFY+
Sbjct: 393 SHSDAEWVEMDFNGEKTAMKQFFP---QEQGGDGFFYA 427
>gi|417949578|ref|ZP_12592712.1| 16S rRNA methyltransferase B [Vibrio splendidus ATCC 33789]
gi|342808087|gb|EGU43257.1| 16S rRNA methyltransferase B [Vibrio splendidus ATCC 33789]
Length = 426
Score = 216 bits (551), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 116/337 (34%), Positives = 200/337 (59%), Gaps = 34/337 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR +LR + E+ K + + + +P W + ++ +YP+ QW+ +++ + K
Sbjct: 113 LINAVLRSYLRDQEEL-DEKAVSHNAGKYGHPSWILKMLQESYPD--QWEQLIEANNSKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLA--IKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N++ T Y +LLK +E T+ A IKL +P ++ +P F G+ S+QD
Sbjct: 170 PMWLRVNRQHHTRDEYVELLKNENIEYTLHSEAADAIKLASPCDVTLLPGFDKGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQL+ L + G +LD C+APGGKT H+LE D +++++D ++ RL+ + +NL+R
Sbjct: 230 AAAQLSVDYLTPKDGELILDCCAAPGGKTAHILEHTNDTEVVAIDCDVKRLDRVYDNLER 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L L+A +I D R+ ++ FDRIL D PC+ +GV+RR+
Sbjct: 290 LQLRADVICGDA------------------RYPEEWWMGDKFDRILLDAPCSATGVIRRH 331
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR +DI+ L++ +I++ +W+ LK GG +++ TCS+ +E+ Q F + +
Sbjct: 332 PDIKWLRRASDIEALAELQSEIMDAMWRQLKEGGTMVYATCSITPQENVLQVKAFLERTE 391
Query: 296 DSIRLNS----PG-QLLPTVNKKQDYDGFFYSLFQKR 327
++ + S PG Q+LP ++D DGF+Y++ K+
Sbjct: 392 NATLVGSDIENPGRQILP---GEEDMDGFYYAVLVKQ 425
>gi|261346903|ref|ZP_05974547.1| ribosomal RNA small subunit methyltransferase B [Providencia
rustigianii DSM 4541]
gi|282564970|gb|EFB70505.1| ribosomal RNA small subunit methyltransferase B [Providencia
rustigianii DSM 4541]
Length = 428
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 120/335 (35%), Positives = 193/335 (57%), Gaps = 29/335 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR FLR++ ++ + N S + +P W + +++I YP+ QW++I+D +++P
Sbjct: 117 LINGVLRSFLRQQVQLEERNHNN--NSQYLHPSWLLKRLQIAYPD--QWQDIVDANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTI--IGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + T Y LL+++G+ + P A++L S++++P F G+ ++QD
Sbjct: 173 PMWLRVNPQHNTTDQYLTLLEQAGITAHLHPTHPNAVRLEDATSVNRLPGFDEGWSTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
+AQ A LL G +LD C+APGGKT H+LE+A +++VD + SRL + ENL+R
Sbjct: 233 VSAQGCAELLSPVDGDSILDLCAAPGGKTTHILELAPKAHVLAVDIDDSRLKRVKENLQR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L +A +I D +K + + FDRIL D PC+ +GV+RR+PD
Sbjct: 293 LKQQAIVIQGDGTKPE----------------EWAHGQQFDRILLDAPCSATGVIRRHPD 336
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI +LS+ +IL +W LKPGG L++ TCS+ EE+ Q F H D+
Sbjct: 337 IKWLRRDSDINELSQLQFQILEAIWPYLKPGGTLVYATCSIIPEENSLQIQRFLTKHVDA 396
Query: 298 IRLNSPG---QLLPTVNKKQDYDGFFYSLFQKRKE 329
+ Q+LP+ DGFFY+ K+ +
Sbjct: 397 SITDGTEFGLQILPSTTGG---DGFFYARLLKQAQ 428
>gi|330447314|ref|ZP_08310964.1| ribosomal RNA small subunit methyltransferase B [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
gi|328491505|dbj|GAA05461.1| ribosomal RNA small subunit methyltransferase B [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
Length = 426
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 119/334 (35%), Positives = 192/334 (57%), Gaps = 30/334 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INAILR + R++ E+ +K + +P W + +K +YP Q++ I + + K
Sbjct: 113 LINAILRNYQRQQEEL-DAKAISHDAGKLGHPSWLLKLLKESYPE--QFEAICEANNTKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTI--IGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N++ T +Y LL G+ T + A++L +P ++K+P F +G+ S+QD
Sbjct: 170 PMWLRVNRQHNTRDAYRALLDAEGIATELHPQAADALRLLSPCDVTKLPGFSDGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQLA L ++G +LD C+APGGKT H++E + K++++D + +RL + ENL R
Sbjct: 230 AAAQLAVDYLQPQAGELILDCCAAPGGKTAHIMEHVPSTKVVAIDCDENRLKRVHENLAR 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
LNL AT++ +D +++K FDRIL D PC+ +GV+RR+PD
Sbjct: 290 LNLDATVLCADARYPE----------------QWWKGDKFDRILLDAPCSATGVIRRHPD 333
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR DI L+ +I + +W LKPGG L++ TCS+ +E+ +Q F D+
Sbjct: 334 IKWLRRGEDIAALATLQAEIFDAMWLQLKPGGTLVYATCSITPQENCDQVKAFLARTLDA 393
Query: 298 IRLNS----PG-QLLPTVNKKQDYDGFFYSLFQK 326
+ S PG Q+LP ++ DGF+Y++ K
Sbjct: 394 TLVGSDPAKPGRQILP---GEEAMDGFYYAVLTK 424
>gi|298370615|ref|ZP_06981930.1| ribosomal RNA small subunit methyltransferase B [Neisseria sp. oral
taxon 014 str. F0314]
gi|298281225|gb|EFI22715.1| ribosomal RNA small subunit methyltransferase B [Neisseria sp. oral
taxon 014 str. F0314]
Length = 425
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 117/325 (36%), Positives = 177/325 (54%), Gaps = 15/325 (4%)
Query: 3 NAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPPL 62
NAILR FLR++ ++ ++ + N P+WW+ +K YP W NI PP+
Sbjct: 116 NAILRRFLRERQKL-EALCKKDDVAKHNLPLWWVAYLKNHYPK--HWHNITTALQSHPPM 172
Query: 63 TLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAAQ 122
LR+N+R Y + L G+ + A+ L + ++++P F +G S+QD AQ
Sbjct: 173 ALRVNRRHGNAEVYLEKLAAEGIAAKALDEYAVTLEEAVPVNRLPGFSDGLVSVQDFGAQ 232
Query: 123 LAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKA 182
AA LL+ + G +LDAC+APGGKT H+LE+AD + ++D + RL + +NL RL
Sbjct: 233 QAAYLLNPKDGERILDACAAPGGKTGHILELADCHVTALDIDAGRLKRVGDNLDRLGFGE 292
Query: 183 TLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLR 242
T ++ LY + +Y K FD +LAD+PCT SGVVRRNPDI W R
Sbjct: 293 T----RKTRFQTASLYC---ADARDLAAWYDGKQFDAVLADVPCTASGVVRRNPDIKWSR 345
Query: 243 RKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS 302
R D K ++ +L+ LW+ L G++L TCS++ EE+ +Q F H D+
Sbjct: 346 RPTDAVKTARQQEALLDALWQTLTKNGRMLLATCSVFVEENTQQLQKFLNRHADA---KP 402
Query: 303 PGQLLPTVNKKQDYDGFFYSLFQKR 327
G+ + NK Q DGF+Y+L +K+
Sbjct: 403 AGEHVLLPNKYQ--DGFYYALIEKQ 425
>gi|163751682|ref|ZP_02158901.1| sun protein [Shewanella benthica KT99]
gi|161328421|gb|EDP99577.1| sun protein [Shewanella benthica KT99]
Length = 425
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 117/329 (35%), Positives = 184/329 (55%), Gaps = 29/329 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++N +LR R++ K + +N P W + ++K YP W+ +++ H++P
Sbjct: 114 VVNGVLRNIQRQE----KPLPTDNDTLAFNTPAWIVKRLKAAYPE--NWQEVIEQSHQRP 167
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTII-GPLAIKLHTPISISKIPKFFNGFCSIQDA 119
P+ LR N++ T Y L + + + AI L +P ++++P F G S+QD
Sbjct: 168 PMWLRNNKQSQTRDEYLAALAEIDIPASAGKSSDAILLESPRDVAQLPGFEQGAASVQDG 227
Query: 120 AAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLN 179
AAQ AA LL + G +LDAC+APGGKTCHLLE+A+I+L++VD + RL + +NL RL+
Sbjct: 228 AAQWAATLLAPKDGELILDACAAPGGKTCHLLELANIELVAVDFDEKRLERVQQNLDRLS 287
Query: 180 LKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIP 239
LKA L+ D + I+ +++ FDRIL D PC+ +GV+RR+PDI
Sbjct: 288 LKAKLVHGDAADID----------------SWWQGDKFDRILLDAPCSATGVIRRHPDIK 331
Query: 240 WLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIR 299
WLR++ DI +L+ KIL++ W+ LKPGG LL+ TCS+ +E+E+Q F D+
Sbjct: 332 WLRKQTDIDELASLQSKILDHCWQWLKPGGTLLYATCSILPQENEQQIRSFLARADDATL 391
Query: 300 LNSPGQLLPT------VNKKQDYDGFFYS 322
Q P ++ DGF+Y+
Sbjct: 392 FPISEQPNPDDIGWQITPGTENMDGFYYA 420
>gi|90581174|ref|ZP_01236973.1| Putative Sun protein [Photobacterium angustum S14]
gi|90437695|gb|EAS62887.1| Putative Sun protein [Vibrio angustum S14]
Length = 426
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 117/334 (35%), Positives = 192/334 (57%), Gaps = 30/334 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INAILR + R++ E+ +K + + +P W + +K +YP Q+ +I + + K
Sbjct: 113 LINAILRNYQRQQEEL-DTKAISHDAGKYGHPSWLLKLLKESYPE--QFADICEANNTKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTI--IGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N++ T +Y LL + T + A++L +P ++K+P F +G+ S+QD
Sbjct: 170 PMWLRVNRQHNTRDAYRALLDAEDIATELHPQAADALRLVSPCDVTKLPGFSDGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQLA L ++G +LD C+APGGKT H++E + K++++D + +RL + ENL R
Sbjct: 230 AAAQLAVDYLQPKAGELILDCCAAPGGKTAHIMEHVPSTKVVAIDCDENRLKRVHENLAR 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
LNL AT++ +D ++++ FDRIL D PC+ +GV+RR+PD
Sbjct: 290 LNLDATVLCADARYPE----------------QWWQGDKFDRILLDAPCSATGVIRRHPD 333
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR DI L+ +I + +W LKPGG L++ TCS+ +E+ +Q F D+
Sbjct: 334 IKWLRRGEDIAALATLQAEIFDAMWLQLKPGGTLVYATCSITPQENCDQVKAFLARTSDA 393
Query: 298 IRLNS----PG-QLLPTVNKKQDYDGFFYSLFQK 326
+ S PG Q+LP ++ DGF+Y++ K
Sbjct: 394 TLIGSDPAKPGRQILP---GEESMDGFYYAVLTK 424
>gi|238754203|ref|ZP_04615561.1| Ribosomal RNA small subunit methyltransferase B [Yersinia ruckeri
ATCC 29473]
gi|238707699|gb|EEQ00059.1| Ribosomal RNA small subunit methyltransferase B [Yersinia ruckeri
ATCC 29473]
Length = 429
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 115/331 (34%), Positives = 197/331 (59%), Gaps = 32/331 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++N +LR+F R++ ++ + N ES + +P W + ++K YP+ +W+ I+D ++KP
Sbjct: 117 LVNGVLRQFQRQQVDLLERAANN--ESRYLHPSWLLARIKKAYPD--KWQQIIDANNQKP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+++ + Y +L+K++G+E A++L TP +++ +P F G+ ++QD
Sbjct: 173 PMWLRVSRLHHSRADYLELMKQAGIEAEPHTEYSDAVRLITPCAVNDLPGFTQGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LLD ++G +LD C+APGGKT H+LE A +++VD + RL+ + ENL+R
Sbjct: 233 ASAQGCVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKSHVLAVDIDEQRLSRVKENLQR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L AT+ + D + ++ N+ FDRIL D PC+ +GV+RR+PD
Sbjct: 293 LQLHATVTVGDGRAPD----------------KWCGNQLFDRILLDAPCSATGVIRRHPD 336
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI +L++ +IL +W LK G +++ TCS+ EE+++Q F + H ++
Sbjct: 337 IKWLRRDSDIAELAQLQSEILEAIWPKLKKDGVMVYATCSILPEENQQQIANFLQRHPEA 396
Query: 298 --IRLNSPGQL----LPTVNKKQDYDGFFYS 322
+ +P Q LP +D DGFFY+
Sbjct: 397 RLVETGTPAQPGKQNLP---HPEDGDGFFYA 424
>gi|219871972|ref|YP_002476347.1| ribosomal RNA small subunit methyltransferase B [Haemophilus
parasuis SH0165]
gi|219692176|gb|ACL33399.1| ribosomal RNA small subunit methyltransferase B [Haemophilus
parasuis SH0165]
Length = 432
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 128/339 (37%), Positives = 191/339 (56%), Gaps = 35/339 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
+ N +LR FLR++ I + +W +P W +N++K YPN W+ I+D ++
Sbjct: 116 LTNGVLRRFLREQEAILAKV-----DKHWQTLHPEWLVNKLKQAYPN---WREIVDANNQ 167
Query: 59 KPPLTLRINQRKTTLISYNKLL---KKSGLETTIIGP-LAIKLHTPISISKIPKFFNGFC 114
KPP+ +R+N ++T Y LL K+ E T P A+ L +S+S++P F G+
Sbjct: 168 KPPMWIRVNAQRTNRADYVALLGDLAKNHKEATACVPDCAVLLDKAVSVSQLPHFKQGWV 227
Query: 115 SIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISE 173
++QDA AQ +A LLD ++G +LDAC+APGGKT H+LE A K+I++D +RL + E
Sbjct: 228 AVQDAHAQWSAELLDAQNGELILDACAAPGGKTTHILEKAPQAKVIALDIEEARLVRVKE 287
Query: 174 NLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVR 233
NL RLN AT+I D S+ + FD+IL D PC+ +GV+R
Sbjct: 288 NLARLNQTATVICGDASQ---------------PEQWLTSGEMFDKILLDAPCSATGVIR 332
Query: 234 RNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKN 293
R+PDI WLR++ DI L++ KIL LW LKP G LL+ TCS+ EE+ +Q F
Sbjct: 333 RHPDIKWLRKEEDIAGLAELQGKILKALWARLKPNGVLLYATCSVLPEENSQQIQHFLAQ 392
Query: 294 HKDS--IRLNSPGQ--LLPTVNKKQD-YDGFFYSLFQKR 327
++ + +N G+ L+ KQD DGFFY+ K+
Sbjct: 393 TPEAKLVEINVGGEQCLMKQFFPKQDGGDGFFYAKLVKQ 431
>gi|337281228|ref|YP_004620700.1| 16S rRNA m5C967 methyltransferase [Ramlibacter tataouinensis
TTB310]
gi|334732305|gb|AEG94681.1| 16S rRNA m5C967 methyltransferase-like protein [Ramlibacter
tataouinensis TTB310]
Length = 449
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 126/343 (36%), Positives = 196/343 (57%), Gaps = 34/343 (9%)
Query: 2 INAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
INA LR FLR++ + + ++WN+P WWI +++ +P W+ IL + +PP
Sbjct: 120 INACLRRFLREQPALVAATDSEP-VAHWNHPRWWIERLRHDHPR--HWQAILQAANTQPP 176
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+TLR+N RK+T + +E +G + L P + ++P F G S+QDAAA
Sbjct: 177 MTLRVNARKSTPALLLQAWAAMQVEARPVGEHGLVLTRPRPVHEVPGFDQGQVSVQDAAA 236
Query: 122 QLAAPL----LDIRSGMYVLDACSAPGGKTCHLLEIA--DIKLISVDNNLSRLNMISENL 175
QLAAPL LD + +LDAC+APGGKT HL E+A + +LI++D + +R I E L
Sbjct: 237 QLAAPLLLRELDGMRPLRLLDACAAPGGKTAHLRELAGDEAELIALDVDPARCERIRETL 296
Query: 176 KRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRN 235
RL L A ++ +D ++ + ++ + FD IL D PCT SG+VRR+
Sbjct: 297 ARLGLAAQVVAADAAEPSA----------------WWDGQPFDGILLDAPCTASGIVRRH 340
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PD+ WLRR+ D+ +L+ ++L+ LW +L+PGG+LL+ TCS++ E E Q F ++
Sbjct: 341 PDVRWLRREADVARLAALQARLLDALWPLLRPGGRLLYCTCSVFRAEGEAQIQSFVAHNT 400
Query: 296 DSIRLNSPGQLLPTV---------NKKQDYDGFFYSLFQKRKE 329
D+ +PG L+P N D+DGFFY+L +KR++
Sbjct: 401 DAALRPAPGHLIPQTGANPDPLRDNLPGDHDGFFYALLEKRRQ 443
>gi|383817278|ref|ZP_09972655.1| 16S rRNA methyltransferase B [Serratia sp. M24T3]
gi|383293898|gb|EIC82255.1| 16S rRNA methyltransferase B [Serratia sp. M24T3]
Length = 429
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 120/331 (36%), Positives = 192/331 (58%), Gaps = 32/331 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ ++ + +M N ++S + +P W + ++K YP QW+ ILD +++P
Sbjct: 117 LINGVLRQFQRQQVDLLQ-RMQN-NDSRYLHPSWLLKRIKNAYPE--QWQQILDANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLA--IKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N++ T +Y LL ++G+E A ++L TP ++ +P F G+ ++QD
Sbjct: 173 PMWLRVNRQHHTRDAYLALLIEAGIEAHPHPDYADALRLETPCGVTSLPGFDQGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ + LLD + G +LD C APGGKT H+LE A +++VD + RL + ENL+R
Sbjct: 233 ASAQGSVDLLDPQDGEAILDLCCAPGGKTTHILEAAPKAHVLAVDVDKQRLQRVHENLQR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L A + D + ++ + K FD+IL D PC+ +GV+RR+PD
Sbjct: 293 LGLHAEVKQGDGREPHV----------------WATGKVFDKILLDAPCSATGVIRRHPD 336
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI +L+ +IL +W LKP G L++ TCS+ EE+ EQ F H ++
Sbjct: 337 IKWLRRDSDITELASLQAEILEAIWPTLKPQGTLVYATCSILPEENSEQITAFLARHPEA 396
Query: 298 IRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
+ + PG Q LP N DGF+Y+
Sbjct: 397 RLVETGDIERPGKQNLPDANSG---DGFYYA 424
>gi|89092289|ref|ZP_01165243.1| Fmu, rRNA SAM-dependent methyltransferase [Neptuniibacter
caesariensis]
gi|89083377|gb|EAR62595.1| Fmu, rRNA SAM-dependent methyltransferase [Oceanospirillum sp.
MED92]
Length = 432
Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 126/340 (37%), Positives = 193/340 (56%), Gaps = 38/340 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NAILR F R++ +I S++ +N+ W I ++K +P+ W+ IL+ +++
Sbjct: 115 LLNAILRRFQREQDDI-TSELKGEDSYLYNHSEWMIAKLKNNWPD--HWQAILEANNEQA 171
Query: 61 PLTLRINQRKTTLISYNKLLKKS-GLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDA 119
PLTLR+N+R + + + L + T+ ++L +++ +P + G S+QD
Sbjct: 172 PLTLRVNRRSISREEFQQQLNPVIDSDPTVFSDQGLRLAESVNVESLPGYQVGAFSVQDE 231
Query: 120 AAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDN---NLSRLNMISENLK 176
AAQL+A LLD++ VLDAC+APGGK CH+LE ++ KL SV+ R I ENLK
Sbjct: 232 AAQLSADLLDLKPQQRVLDACAAPGGKLCHILE-SEPKLASVEAVELEAKRAERIEENLK 290
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL LKATL + D S+ + ++ +DRIL D PC+ +GV+RRNP
Sbjct: 291 RLRLKATLHIGDASEQS-----------------WWDGDLYDRILLDAPCSATGVIRRNP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI +LR+ DI +L++ IL N W MLKPGGKLL+ TCS++ +E+E Q F N+ D
Sbjct: 334 DIKFLRKGEDIHELAQIQSDILANCWAMLKPGGKLLYATCSIFPQENERQIKRFISNNSD 393
Query: 297 SIRLNSPG----------QLLPTVNKKQDYDGFFYSLFQK 326
+ L QL P +K +DGF+Y+L +K
Sbjct: 394 AKHLAIDASWGIEREFGRQLFP---EKGGHDGFYYALLEK 430
>gi|268593572|ref|ZP_06127793.1| ribosomal RNA small subunit methyltransferase B [Providencia
rettgeri DSM 1131]
gi|291310849|gb|EFE51302.1| ribosomal RNA small subunit methyltransferase B [Providencia
rettgeri DSM 1131]
Length = 427
Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 121/334 (36%), Positives = 195/334 (58%), Gaps = 31/334 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR F R++ ++ + N S + +P W + +++ YP W++I++ +++P
Sbjct: 117 LINGVLRSFQRQQVQLEERIANNT--SQYLHPSWLLKRLQTAYPE--DWQSIIEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTI--IGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + T Y LL++S + + P AI+L P ++S++P F +G+ ++QD
Sbjct: 173 PMWLRVNSQHHTAAQYLNLLEQSEITAHLHPSHPNAIRLDEPTAVSRLPGFEDGWSTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKR 177
+AQ A LL+ ++G +LD C+APGGKT H+LE+A +I+VD + RL + ENL R
Sbjct: 233 VSAQGCAELLEPQNGESILDLCAAPGGKTTHILELAPRANVIAVDIDEYRLKRVKENLIR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L A +I D ++ ++ K++ FDRIL D PC+ +GV+RR+PD
Sbjct: 293 LKQHAVVIQGDGTQPE----------------KWAKDQQFDRILLDAPCSATGVIRRHPD 336
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI +L++ +IL +W LKPGG LL+ TCS+ EE+ +Q F H D+
Sbjct: 337 IKWLRRDSDINELAQLQAQILEAIWPYLKPGGTLLYATCSIMPEENGKQIQNFLSKHNDA 396
Query: 298 IRLNSPG----QLLPTVNKKQDYDGFFYSLFQKR 327
LN Q+LP+ N DGFFY+ K+
Sbjct: 397 -SLNDGTDAGLQVLPSTNGG---DGFFYARLVKK 426
>gi|429111892|ref|ZP_19173662.1| Ribosomal RNA small subunit methyltransferase B [Cronobacter
malonaticus 507]
gi|426313049|emb|CCJ99775.1| Ribosomal RNA small subunit methyltransferase B [Cronobacter
malonaticus 507]
Length = 429
Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 114/331 (34%), Positives = 194/331 (58%), Gaps = 32/331 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + ++ W +P+W +N+++ +P +W+++++ +++P
Sbjct: 117 LINGVLRQFQRQQDELLAE--FAGQDARWLHPMWLLNRLQTAWPR--EWQSVVEANNERP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL---AIKLHTPISISKIPKFFNGFCSIQ 117
P+ LR+N++ + + KLL+++G+ T I P A++L P +S +P F G+ ++Q
Sbjct: 173 PMWLRVNRQHHSRDEWLKLLEENGM-TGHIHPRYRDAVRLDAPAPVSALPGFEQGWVTVQ 231
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
DA+AQ LL ++G +LD C+APGGKT H+LE A +++VD + R++ + ENLK
Sbjct: 232 DASAQGCVELLAPQNGETILDLCAAPGGKTTHILEAAPQASVMAVDVDAQRISRVYENLK 291
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRR 234
RL +KA + + D RF + + FDRIL D PC+ +GV+RR
Sbjct: 292 RLKMKADVKVGD------------------GRFPSTWCGDTQFDRILLDAPCSATGVIRR 333
Query: 235 NPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH 294
+PDI WLRR +DI +L++ +IL+ +W LKPGG LL+ TCS+ +E+ EQ F
Sbjct: 334 HPDIKWLRRDSDINELAQLQSEILDAIWPHLKPGGTLLYATCSVLPDENSEQIRAFLTRT 393
Query: 295 KDSIRLNSPGQLLPTVNK---KQDYDGFFYS 322
D+ + Q P + + DGFFY+
Sbjct: 394 PDAQLDGTGSQHTPGIQNLPGATEGDGFFYA 424
>gi|407069538|ref|ZP_11100376.1| 16S rRNA methyltransferase B [Vibrio cyclitrophicus ZF14]
Length = 426
Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 115/337 (34%), Positives = 201/337 (59%), Gaps = 34/337 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR +LR + E+ K + + +++P W + ++ +YP+ QW+ +++ + K
Sbjct: 113 LINAVLRSYLRDQEEL-DEKAVSHNAGKYSHPSWILKMLQESYPD--QWEQLIEANNSKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTII--GPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N++ T Y +LLK ++ T+ AIKL +P ++ +P F G+ S+QD
Sbjct: 170 PMWLRVNRQHHTRDEYVELLKNENIKYTLHPEAADAIKLASPCDVTLLPGFDRGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQL+ L + G +LD C+APGGKT H+LE D +++++D+++ RL+ + +NL+R
Sbjct: 230 AAAQLSVDYLTPKDGELILDCCAAPGGKTAHILEHTQDTEVVAIDSDIKRLDRVYDNLER 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L L+A +I D R+ ++ FDRIL D PC+ +GV+RR+
Sbjct: 290 LQLRADVICGDA------------------RYPEEWWMGDKFDRILLDAPCSATGVIRRH 331
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR +DI L++ +I++ +W+ LK GG +++ TCS+ +E+ Q F + +
Sbjct: 332 PDIKWLRRASDIDALAELQSEIMDAMWRQLKEGGTMVYATCSITPQENVLQVKAFLERTE 391
Query: 296 DSIRLNS----PG-QLLPTVNKKQDYDGFFYSLFQKR 327
++ + S PG Q+LP ++D DGF+Y++ K+
Sbjct: 392 NATLVGSDIENPGRQILP---GEEDMDGFYYAVLVKQ 425
>gi|307246481|ref|ZP_07528553.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|306852544|gb|EFM84777.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
Length = 432
Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 129/338 (38%), Positives = 189/338 (55%), Gaps = 42/338 (12%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
+IN +LR FLR+K + + W +P W++N++K YPN W+ I+D ++
Sbjct: 116 LINGVLRRFLREKDSLLAK-----FDKNWQTLHPEWFVNKLKKAYPN---WREIIDANNQ 167
Query: 59 KPPLTLRINQRKTTLISYNKLL----KKSGLETTIIGP-LAIKLHTPISISKIPKFFNGF 113
+PP+ +R N ++ Y LL K+ TT P AI L P+ ++K+ F G+
Sbjct: 168 RPPMWIRSNIQRIKPQDYRVLLGDLVAKNSENTTACAPESAILLANPVPVNKLMNFEQGW 227
Query: 114 CSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMIS 172
++QDA AQ +A LL+ ++G +LDAC+APGGKT H+LE A K+I++D SRL +
Sbjct: 228 ATVQDAHAQWSAALLEAQNGELILDACAAPGGKTTHILEAAPQAKVIALDIEESRLKRVR 287
Query: 173 ENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVV 232
ENL RL AT+I D SK ++D FDRIL D PC+ +GV+
Sbjct: 288 ENLARLGQTATVICGDASK---PAEWLD------------DGVMFDRILLDAPCSATGVI 332
Query: 233 RRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSK 292
RR+PDI WLR++NDI +L KIL LW LKP G L++ TCS+ EE+ EQ F
Sbjct: 333 RRHPDIKWLRKENDIAELVALQAKILEALWGRLKPNGVLVYATCSVLPEENGEQITRFVA 392
Query: 293 NHKDS--IRLNSPG------QLLPTVNKKQDYDGFFYS 322
+H D+ + ++ G Q P ++Q DGFFY+
Sbjct: 393 SHSDAEWVEMDFNGEKTAMKQFFP---QEQGGDGFFYA 427
>gi|148978298|ref|ZP_01814803.1| Sun protein [Vibrionales bacterium SWAT-3]
gi|145962457|gb|EDK27735.1| Sun protein [Vibrionales bacterium SWAT-3]
Length = 426
Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 116/337 (34%), Positives = 199/337 (59%), Gaps = 34/337 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR +LR + E+ K + + + +P W + ++ +YP QW+ +++ + K
Sbjct: 113 LINAVLRSYLRDQEEL-DEKAVSHNAGKYGHPSWILKMLQESYPE--QWEQLIEANNSKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLA--IKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N++ T Y +LLK +E T+ A IKL +P ++ +P F G+ S+QD
Sbjct: 170 PMWLRVNRQHHTRDEYVELLKNENIEYTLHSEAADAIKLASPCDVTLLPGFDKGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQL+ L + G +LD C+APGGKT H+LE D +++++D ++ RL+ + +NL+R
Sbjct: 230 AAAQLSVDYLTPKDGELILDCCAAPGGKTAHILEHTNDTEVVAIDCDIKRLDRVYDNLER 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L L+A +I D R+ ++ FDRIL D PC+ +GV+RR+
Sbjct: 290 LQLRADVICGDA------------------RYPEEWWMGDKFDRILLDAPCSATGVIRRH 331
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR +DI+ L++ +I++ +W+ LK GG +++ TCS+ +E+ Q F + +
Sbjct: 332 PDIKWLRRASDIEALAELQSEIMDAMWRQLKEGGTMVYATCSITPQENVLQVKAFLERTE 391
Query: 296 DSIRLNS----PG-QLLPTVNKKQDYDGFFYSLFQKR 327
++ + S PG Q+LP ++D DGF+Y++ K+
Sbjct: 392 NATLVGSDIENPGRQILP---GEEDMDGFYYAVLVKQ 425
>gi|406937041|gb|EKD70622.1| hypothetical protein ACD_46C00478G0007 [uncultured bacterium]
Length = 427
Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 124/339 (36%), Positives = 193/339 (56%), Gaps = 38/339 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LRE+LR K +I ++M E+ + +P WWI+ +K +P+ QW+ IL + P
Sbjct: 113 LINAVLREYLRNKDKI-DAEMMTDDEAIYAHPSWWIHAIKKAWPD--QWEQILSANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P +LR+N ++ +Y L + E II I L +PIS+ +P F +G S+QD
Sbjct: 170 PFSLRVNLQRADRDTY---LHRIENEAQIIPETKTGILLASPISVDMLPGFADGDISVQD 226
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEI-ADIKLISVDNNLSRLNMISENLKR 177
AAQLAA LL + VLDAC+APGGK H+LEI +++++++ + R+ I ENL R
Sbjct: 227 GAAQLAAELLQLEPEQLVLDACAAPGGKLMHMLEIQPQLEVVAIEKDPKRIESIRENLIR 286
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L +A I D +++ ++ + FDRIL D PC+ SGV+RR+PD
Sbjct: 287 LKSQADCICRDANEVE----------------SWWDGRLFDRILLDAPCSASGVIRRHPD 330
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I LR+ D+K L+K K+L++LW +L GG ++VTCS++ EE+ Q F H D+
Sbjct: 331 IKLLRQPTDLKNLAKEQAKLLDSLWPLLTSGGLFVYVTCSIFPEENILQMQHFIDRHPDA 390
Query: 298 ----------IRLNSPGQLLPTVNKKQDYDGFFYSLFQK 326
I + Q+LP ++ + DGF+Y+ F+K
Sbjct: 391 LEEKIRADWGIACDIGRQILPGMH---EMDGFYYACFRK 426
>gi|378775411|ref|YP_005177654.1| ribosomal RNA small subunit methyltransferase B [Pasteurella
multocida 36950]
gi|356597959|gb|AET16685.1| ribosomal RNA small subunit methyltransferase B [Pasteurella
multocida 36950]
Length = 446
Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 127/341 (37%), Positives = 195/341 (57%), Gaps = 39/341 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
++N +LR FLR++ E K+ + +W+ +P W +N++K YPN W+ I++ +
Sbjct: 127 LVNGVLRRFLREQ-ETLLVKV----DKHWHTLHPDWLVNRLKEAYPN---WREIVEANNH 178
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLETT-IIGPLAIKLHTPISISKIPKFFNGFCSIQ 117
KPP+ LR+NQ+K + +Y LL + G+E P A++L P+++S++P F G S+Q
Sbjct: 179 KPPMWLRVNQQKNSTETYRTLLAEQGIEAEKTDNPCALRLLQPVAVSQLPAFHEGAVSVQ 238
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
D AQ +A LL +G +LDAC+APGGKT H+LE A ++++D +RL + ENL
Sbjct: 239 DVNAQWSALLLAPENGELILDACAAPGGKTTHILEQAPQAHVVALDVEATRLKRVHENLA 298
Query: 177 RLNLKATLILSDISKIN--LKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRR 234
R+ +AT+I D ++ LK+L + FDRIL D PC+ +GV+RR
Sbjct: 299 RMQQQATVICGDATQPAQWLKQLSESAVQ-------------FDRILLDAPCSATGVIRR 345
Query: 235 NPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH 294
+PDI WLR+ +DI L +IL LW +LKP G LL+ TCS+ EE+ Q F N+
Sbjct: 346 HPDIKWLRQASDISALVALQKQILQALWTVLKPNGILLYATCSVLPEENALQIEQFLTNN 405
Query: 295 KDS--------IRLNSPG-QLLPTVNKKQDYDGFFYSLFQK 326
D+ + + G Q LPT N DGF+Y+ +K
Sbjct: 406 VDAKLEPLPFTVVEGAVGYQFLPTENGG---DGFYYAKLRK 443
>gi|260914692|ref|ZP_05921158.1| RNA methyltransferase Sun [Pasteurella dagmatis ATCC 43325]
gi|260631291|gb|EEX49476.1| RNA methyltransferase Sun [Pasteurella dagmatis ATCC 43325]
Length = 443
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 122/339 (35%), Positives = 204/339 (60%), Gaps = 35/339 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
+IN +LR FLR++ I + N+ + +W +P W++N++K YPN W+ I++ ++
Sbjct: 125 LINGVLRRFLREQDTI----LANV-DKHWQTLHPDWFVNRLKKVYPN---WREIIEANNQ 176
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLETTII-GPLAIKLHTPISISKIPKFFNGFCSIQ 117
KPP+ LR+NQ+K +L +Y LL+ G+E+ + A++L P+ ++++P F G ++Q
Sbjct: 177 KPPMWLRVNQQKNSLETYRSLLQAQGVESEVADSSCALRLLQPLGVAQLPYFDQGAVTVQ 236
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
D AQ +A LL+ ++G +LDAC+APGGKT H+LE A +++++D +RL + ENL
Sbjct: 237 DLNAQWSALLLEPQNGELILDACAAPGGKTTHILENAPQAQVVALDVEPNRLKRVYENLT 296
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
R+ KA +I D ++ +++ +++ +F DRIL D PC+ +GV+RR+P
Sbjct: 297 RMQQKAQVICGDATQPEQW-----LSQISDSAVQF------DRILLDAPCSATGVIRRHP 345
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR+ DI +L + +IL LW +LKP G LL+ TCS+ EE+ Q F +N+ D
Sbjct: 346 DIKWLRQDADIPQLVQLQSQILQALWALLKPSGTLLYATCSVLPEENALQIEQFLQNNTD 405
Query: 297 S----IRLNSPG-----QLLPTVNKKQDYDGFFYSLFQK 326
+ + + P Q LP K+ DGF+Y+ +K
Sbjct: 406 AKLEPLPFDLPDSAIGVQFLP---KENGGDGFYYAKLKK 441
>gi|15603426|ref|NP_246500.1| hypothetical protein PM1561 [Pasteurella multocida subsp. multocida
str. Pm70]
gi|46397017|sp|Q9CKP7.1|RSMB_PASMU RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|12721953|gb|AAK03645.1| Sun [Pasteurella multocida subsp. multocida str. Pm70]
Length = 446
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 126/341 (36%), Positives = 194/341 (56%), Gaps = 39/341 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
++N +LR FLR++ E K+ + +W+ +P W +N++K YPN W+ I++ +
Sbjct: 127 LVNGVLRRFLREQ-ETLLVKV----DKHWHTLHPDWLVNRLKEAYPN---WREIVEANNH 178
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLETT-IIGPLAIKLHTPISISKIPKFFNGFCSIQ 117
KPP+ LR+NQ+K + +Y LL + G+E P A++L P+++S++P F G S+Q
Sbjct: 179 KPPMWLRVNQQKNSTETYRTLLAEQGIEAEKADNPCALRLLQPVAVSQLPAFHEGAVSVQ 238
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
D AQ +A LL +G +LDAC+APGGKT H+LE A ++++D +RL + ENL
Sbjct: 239 DVNAQWSALLLAPENGELILDACAAPGGKTTHILEQAPQAHVVALDVEATRLKRVHENLA 298
Query: 177 RLNLKATLILSDISKIN--LKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRR 234
R+ +AT+I D ++ LK+L + FDRIL D PC+ +GV+RR
Sbjct: 299 RMQQQATVICGDATQPAQWLKQLSESAVQ-------------FDRILLDAPCSATGVIRR 345
Query: 235 NPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH 294
+PDI WLR+ +DI L +IL LW +LKP G LL+ TCS+ EE+ Q F N+
Sbjct: 346 HPDIKWLRQASDISALVALQKQILQALWTVLKPNGILLYATCSVLPEENALQIEQFLTNN 405
Query: 295 KD---------SIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 326
D ++ + Q LPT N DGF+Y+ +K
Sbjct: 406 VDAKLEPLPFTAVEGSVGYQFLPTENGG---DGFYYAKLRK 443
>gi|421264314|ref|ZP_15715306.1| 16S rRNA methyltransferase B [Pasteurella multocida subsp.
multocida str. P52VAC]
gi|401688394|gb|EJS83999.1| 16S rRNA methyltransferase B [Pasteurella multocida subsp.
multocida str. P52VAC]
Length = 446
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 126/341 (36%), Positives = 194/341 (56%), Gaps = 39/341 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
++N +LR FLR++ E K+ + +W+ +P W +N++K YPN W+ I++ +
Sbjct: 127 LVNGVLRRFLREQ-ETLLVKV----DKHWHTLHPDWLVNRLKEAYPN---WREIVEANNH 178
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLETT-IIGPLAIKLHTPISISKIPKFFNGFCSIQ 117
KPP+ LR+NQ+K + +Y LL + G+E P A++L P+++S++P F G S+Q
Sbjct: 179 KPPMWLRVNQQKNSTETYRTLLAEQGIEAEKADNPCALRLLQPVAVSQLPAFHEGAVSVQ 238
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
D AQ +A LL +G +LDAC+APGGKT H+LE A ++++D +RL + ENL
Sbjct: 239 DVNAQWSALLLAPENGELILDACAAPGGKTTHILEQAPQAHVVALDVEATRLKRVHENLA 298
Query: 177 RLNLKATLILSDISKIN--LKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRR 234
R+ +AT+I D ++ LK+L + FDRIL D PC+ +GV+RR
Sbjct: 299 RMQQQATVICGDATQPAQWLKQLSESAVQ-------------FDRILLDAPCSATGVIRR 345
Query: 235 NPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH 294
+PDI WLR+ +DI L +IL LW +LKP G LL+ TCS+ EE+ Q F N+
Sbjct: 346 HPDIKWLRQASDISALVALQKQILQALWTVLKPNGILLYATCSVLPEENALQIEQFLTNN 405
Query: 295 KD---------SIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 326
D ++ + Q LPT N DGF+Y+ +K
Sbjct: 406 VDAKLEPLPFTAVEGSVGYQFLPTENGG---DGFYYAKLRK 443
>gi|85711007|ref|ZP_01042068.1| tRNA and rRNA methylase [Idiomarina baltica OS145]
gi|85695411|gb|EAQ33348.1| tRNA and rRNA methylase [Idiomarina baltica OS145]
Length = 437
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 122/336 (36%), Positives = 187/336 (55%), Gaps = 31/336 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYW-NYPIWWINQVKITYPNFFQWKNILDVGHKK 59
++N +LR+ LR+ + + N+P W +++ Y + + + +
Sbjct: 121 LVNGVLRQVLREAPTRNDDGERELPSAEGGNHPRWLREKIRAAYGE--KAEAVFTANDSQ 178
Query: 60 PPLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQ 117
PPL LR N+R T + Y LL ++G+E AI+L P+ ++K+P F G+ S+Q
Sbjct: 179 PPLWLRANRRHTNVTDYTALLAENGIEAVADSQASDAIRLVKPVPVTKLPHFEAGWVSVQ 238
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIK--LISVDNNLSRLNMISENL 175
D +AQLAA ++D + VLD C+APGGKT HLLE + + LI++D + RL +SENL
Sbjct: 239 DRSAQLAADMVDAQPEHRVLDCCAAPGGKTVHLLERTEFQTPLIAIDVDEQRLERVSENL 298
Query: 176 KRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRN 235
R +L ++ +D+ +D++ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 299 YRADLSCEVVCADV---------LDLDS-------WWDKQPFDRILLDAPCSATGVIRRH 342
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR +DI +L + +L LW LKPGG+L++ TCS+ EE+ EQ F H
Sbjct: 343 PDIKWLRRSSDIDQLVELQQSMLERLWPTLKPGGQLIYATCSILPEENSEQISHFLGQHS 402
Query: 296 D----SIRLNSPG-QLLPTVNKKQDYDGFFYSLFQK 326
D +I N P QLLP N D DGFFY+ +K
Sbjct: 403 DANLIAIEANRPMLQLLPGEN---DGDGFFYAKIEK 435
>gi|53729217|ref|ZP_00348347.1| COG0144: tRNA and rRNA cytosine-C5-methylases [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|126209024|ref|YP_001054249.1| ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 5b str. L20]
gi|165976991|ref|YP_001652584.1| SUN protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
gi|190150891|ref|YP_001969416.1| ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|303252922|ref|ZP_07339079.1| SUN protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
gi|307248606|ref|ZP_07530620.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|307250839|ref|ZP_07532767.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|307255464|ref|ZP_07537270.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|307257633|ref|ZP_07539392.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|307259916|ref|ZP_07541629.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|307264244|ref|ZP_07545834.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
gi|126097816|gb|ABN74644.1| ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 5b str. L20]
gi|165877092|gb|ABY70140.1| SUN protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
gi|189916022|gb|ACE62274.1| ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|302648230|gb|EFL78429.1| SUN protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
gi|306854817|gb|EFM87006.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|306857089|gb|EFM89217.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|306861506|gb|EFM93494.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|306863808|gb|EFM95732.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|306865944|gb|EFM97819.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|306870415|gb|EFN02169.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
Length = 432
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 128/338 (37%), Positives = 188/338 (55%), Gaps = 42/338 (12%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
+IN +LR FLR+K + + W +P W++N++K YPN W+ I+D ++
Sbjct: 116 LINGVLRRFLREKDSLLAK-----FDKNWQTLHPEWFVNKLKKAYPN---WREIIDANNQ 167
Query: 59 KPPLTLRINQRKTTLISYNKLL-----KKSGLETTIIGPLAIKLHTPISISKIPKFFNGF 113
+PP+ +R N ++ Y LL K S T + AI L P+ ++K+ F G+
Sbjct: 168 RPPMWIRSNIQRIKPQDYRVLLGDLVAKNSENTTACVPESAILLANPVPVNKLMNFEQGW 227
Query: 114 CSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMIS 172
++QDA AQ +A LL+ ++G +LDAC+APGGKT H+LE A K+I++D SRL +
Sbjct: 228 ATVQDAHAQWSAALLEAQNGELILDACAAPGGKTTHILEAAPQAKVIALDIEESRLKRVR 287
Query: 173 ENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVV 232
ENL RL AT+I D SK ++D FDRIL D PC+ +GV+
Sbjct: 288 ENLARLGQTATVICGDASK---PAEWLD------------DGVMFDRILLDAPCSATGVI 332
Query: 233 RRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSK 292
RR+PDI WLR++NDI +L KIL LW LKP G L++ TCS+ EE+ EQ F
Sbjct: 333 RRHPDIKWLRKENDIAELVALQAKILEALWGRLKPNGVLVYATCSVLPEENGEQITRFVA 392
Query: 293 NHKDS--IRLNSPG------QLLPTVNKKQDYDGFFYS 322
+H D+ + ++ G Q P ++Q DGFFY+
Sbjct: 393 SHSDAEWVEMDFNGEKTAMKQFFP---QEQGGDGFFYA 427
>gi|452122779|ref|YP_007473027.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Javiana str. CFSAN001992]
gi|451911783|gb|AGF83589.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Javiana str. CFSAN001992]
Length = 429
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 115/332 (34%), Positives = 194/332 (58%), Gaps = 34/332 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + ++ + +P W + +++ YP QW+ I+D +++P
Sbjct: 117 LINGVLRQFQRQQETLLNE--FATSDARFLHPGWLVKRLQNAYPT--QWQRIIDANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T + LLK +G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHTRDGWLGLLKDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ A L ++G ++LD C+APGGKT H+LE+A + +++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVLAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LKPGG L++ TCS+ EE+ EQ F +
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATCSVLPEENREQIKAFLQRTP 394
Query: 296 DSI-----RLNSPGQLLPTVNKKQDYDGFFYS 322
D+ + PGQ + ++ DGFFY+
Sbjct: 395 DAALSKTGTPDQPGQQ--NLPGGEEGDGFFYA 424
>gi|378580947|ref|ZP_09829599.1| 16S rRNA m5C967 methyltransferase [Pantoea stewartii subsp.
stewartii DC283]
gi|377816426|gb|EHT99529.1| 16S rRNA m5C967 methyltransferase [Pantoea stewartii subsp.
stewartii DC283]
Length = 432
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 116/333 (34%), Positives = 190/333 (57%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ S +P W +N++++ +P+ +W+ I+D +++P
Sbjct: 117 LINGVLRQFQRRQEELLASIQEGPQRHL--HPGWLLNRLQLAWPD--RWQQIVDANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N++ T S+ LL S E P A++L TP + ++P F G+ ++QD
Sbjct: 173 PMWLRVNRQHHTRDSWLALLTASEREAMAAEDVPEALRLATPAPVHQLPGFDQGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
+AQ A LL+ ++G ++LD C+APGGKT H+LEIA D ++++VD + RL ++ENL R
Sbjct: 233 LSAQRCALLLEPKNGEHILDLCAAPGGKTTHILEIAPDAQVLAVDVDAQRLKRVTENLTR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L + A + K+ + R ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMTAEV------------------KQGDGRTPQQWCDQRQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L+ IL W +LK GG +++ TCS+ EE+ EQ F + H
Sbjct: 335 PDIKWLRRDRDISELAALQRDILEATWPLLKAGGTMIYATCSVLPEENHEQISGFLQRHA 394
Query: 296 DSIRLNSPG------QLLPTVNKKQDYDGFFYS 322
D+ ++ G Q+ P + DGFFY+
Sbjct: 395 DAQAVSLSGAPETGWQVFPDA---EGGDGFFYA 424
>gi|237806927|ref|YP_002891367.1| sun protein [Tolumonas auensis DSM 9187]
gi|237499188|gb|ACQ91781.1| sun protein [Tolumonas auensis DSM 9187]
Length = 433
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 124/340 (36%), Positives = 195/340 (57%), Gaps = 35/340 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR R++ E+ ++ N + ++YP W + ++K + + + ++L G++ P
Sbjct: 113 LINGVLRNAQRQQEELLQAADKN-EPTRFSYPRWLLKKIKQSCQ--YGYVSVLQAGNEYP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N K + Y + L +++T A+ L +SK+P F +G CS+QD
Sbjct: 170 PMWLRVNLSKQSRDEYQRQLAAVEIQSTPHASCESALLLEKACDVSKLPGFADGACSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE--IADIKLISVDNNLSRLNMISENLK 176
AAAQ AA LLD + +LDAC+APGGKT H+LE A +L++VD++ +RL+ ++ENL+
Sbjct: 230 AAAQHAAWLLDPQPNELILDACAAPGGKTAHILERQPALKQLVAVDSDANRLSRVAENLQ 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
R+ L+ATLI D S ++++ FDRIL D PC+ +GV+RR+P
Sbjct: 290 RIQLEATLINGDASHPE----------------QWWQGPQFDRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLRR DI +L+ ILN +W+ LKPGG LL+ TCS+ +E+ Q F + D
Sbjct: 334 DIKWLRRPEDIAELAHLQHDILNAMWQQLKPGGTLLYATCSILSDENSSQIKSFLERTAD 393
Query: 297 SIRLN--------SPG-QLLPTVNKKQDYDGFFYSLFQKR 327
+I + PG Q+ P +Q DGFFY+ K+
Sbjct: 394 AIHVPLNEKDTALQPGWQIHPG---EQHMDGFFYAKLTKQ 430
>gi|359299307|ref|ZP_09185146.1| 16S rRNA methyltransferase B [Haemophilus [parainfluenzae] CCUG
13788]
Length = 433
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 123/339 (36%), Positives = 186/339 (54%), Gaps = 35/339 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
+ NA+LR FLR++ I + +W +P W +NQ+K YPN W++I++ +
Sbjct: 116 LTNAVLRRFLREQEAILAKV-----DKHWQTLHPEWLVNQLKKAYPN---WRDIVEANNA 167
Query: 59 KPPLTLRINQRKTTLISYNKLL----KKSGLETTIIGPLAIKLHTPISISKIPKFFNGFC 114
+PP+ LR+NQ++++ +Y LL +S T + AI L+ P ++S++P F G
Sbjct: 168 RPPMWLRVNQQQSSRENYQALLGELANRSPNPTACVPDCAILLNQPTAVSRLPHFDEGRV 227
Query: 115 SIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISE 173
++QDA AQ +A LLD + G +LDAC+APGGKT H+LE A K+I++D RL + E
Sbjct: 228 TVQDAHAQWSAELLDAQDGELILDACAAPGGKTTHILEKAPKAKVIALDIEAGRLQRVKE 287
Query: 174 NLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVR 233
NL RL +A +I D S+ + FDRIL D PC+ +GV+R
Sbjct: 288 NLARLGQQAEVICGDASR---------------PETWLAEGVMFDRILLDAPCSATGVIR 332
Query: 234 RNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKN 293
R+PDI WLR+++DI L+ +IL+ LW LKP G LL+ TCS+ E+ EQ F
Sbjct: 333 RHPDIKWLRQESDIPALAALQAQILSALWARLKPNGVLLYATCSILPSENREQIERFVAE 392
Query: 294 HKDSIRLNSPGQLLPTVNKK-----QDYDGFFYSLFQKR 327
+ D+ T K+ + DGFFY+ K+
Sbjct: 393 NADAQLTEMDFHTEKTAMKQFFPQNEGGDGFFYAKLTKQ 431
>gi|425064282|ref|ZP_18467407.1| Ribosomal RNA small subunit methyltransferase B [Pasteurella
multocida subsp. gallicida X73]
gi|404381224|gb|EJZ77702.1| Ribosomal RNA small subunit methyltransferase B [Pasteurella
multocida subsp. gallicida X73]
Length = 446
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 126/341 (36%), Positives = 192/341 (56%), Gaps = 39/341 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
++N +LR FLR++ E K+ + +W+ +P W +N++K YPN W+ I++ +
Sbjct: 127 LVNGVLRRFLREQ-ETLLVKV----DKHWHTLHPDWLVNRLKEAYPN---WRGIVEANNH 178
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLETT-IIGPLAIKLHTPISISKIPKFFNGFCSIQ 117
KPP+ LR+NQ+K + +Y LL + G+E P A++L P+++S++P F G S+Q
Sbjct: 179 KPPMWLRVNQQKNSTETYRTLLAEQGIEAEKTDNPCALRLLQPVAVSQLPAFHEGAVSVQ 238
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
D AQ +A LL +G +LDAC+APGGKT H+LE A ++++D +RL + ENL
Sbjct: 239 DVNAQWSALLLAPENGELILDACAAPGGKTTHILEQAPQAHVVALDVEATRLKRVHENLA 298
Query: 177 RLNLKATLILSDISKIN--LKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRR 234
R+ +AT+I D ++ LK+L FDRIL D PC+ +GV+RR
Sbjct: 299 RMQQQATVICGDATQPAQWLKQLS-------------ESAVQFDRILLDAPCSATGVIRR 345
Query: 235 NPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH 294
+PDI WLR+ +DI L +IL LW +LKP G LL+ TCS+ EE+ Q F N+
Sbjct: 346 HPDIKWLRQASDISALVTLQKQILQALWTILKPNGILLYATCSVLPEENALQIEQFLTNN 405
Query: 295 KD---------SIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 326
D ++ Q LPT N DGF+Y+ +K
Sbjct: 406 VDAKLEPLPFTAVEGAVGYQFLPTENGG---DGFYYAKLRK 443
>gi|223041828|ref|ZP_03612018.1| Trk system potassium uptake protein TrkA [Actinobacillus minor 202]
gi|223017397|gb|EEF15818.1| Trk system potassium uptake protein TrkA [Actinobacillus minor 202]
Length = 432
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 127/338 (37%), Positives = 191/338 (56%), Gaps = 35/338 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
+ N +LR FLR++ I + +W +P W +N++K YPN W+ I++ ++
Sbjct: 117 LTNGVLRRFLREQETILAKV-----DKHWQTLHPEWLVNKLKKAYPN---WREIVEANNQ 168
Query: 59 KPPLTLRINQRKTTLISYNKLL----KKSGLETTIIGPLAIKLHTPISISKIPKFFNGFC 114
KPP+ +R+N + T Y LL K + T + AI L +S++++P F G+
Sbjct: 169 KPPMWIRVNTQHTNRADYVGLLGDLAKNTENVTACLPDCAIALGKAVSVNQLPHFEQGWA 228
Query: 115 SIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISE 173
++QDA AQ +A LLD ++G +LDAC+APGGKT H+LE A K+I++D +RL + E
Sbjct: 229 TVQDAHAQWSAELLDAQNGELILDACAAPGGKTTHILEKAPQAKVIALDIEEARLARVKE 288
Query: 174 NLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVR 233
NL RLN +AT+I D S+ + ++D FDRIL D PC+ +GV+R
Sbjct: 289 NLARLNQQATVICGDASQ---PEQWLD------------NGVMFDRILLDAPCSATGVIR 333
Query: 234 RNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKN 293
R+PDI WLR++ DI +L+ KILN LW LKP G LL+ TCS+ EE+ +Q F N
Sbjct: 334 RHPDIKWLRKEEDIAELAALQSKILNALWARLKPNGILLYATCSVLPEENSQQIQQFIAN 393
Query: 294 HKDSIRLNSPGQLLPTVNKK---QDY--DGFFYSLFQK 326
++ L + K+ Q+Y DGFFY+ K
Sbjct: 394 TPNAKLLEMDFHGEKVLEKQFFPQNYGGDGFFYAKLMK 431
>gi|429106391|ref|ZP_19168260.1| Ribosomal RNA small subunit methyltransferase B [Cronobacter
malonaticus 681]
gi|426293114|emb|CCJ94373.1| Ribosomal RNA small subunit methyltransferase B [Cronobacter
malonaticus 681]
Length = 431
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 114/330 (34%), Positives = 191/330 (57%), Gaps = 30/330 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + ++ W +P+W +N+++ +P +W+ I++ +++P
Sbjct: 119 LINGVLRQFQRQQDELLAE--FAGQDARWLHPMWLLNRLQTAWPR--EWQAIVEANNERP 174
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N++ + + LL+++G+ I P AI+L P +S +P F G+ ++QD
Sbjct: 175 PMWLRVNRQHHSRDEWLTLLEENGMTGHIHPRYPDAIRLDAPAPVSALPGFEQGWVTVQD 234
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LL ++G +LD C+APGGKT H+LE A +++VD + R++ + ENLKR
Sbjct: 235 ASAQGCVELLAPQNGETILDLCAAPGGKTTHILEAAPQASVMAVDVDAQRISRVYENLKR 294
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KA + + D RF + + FDRIL D PC+ +GV+RR+
Sbjct: 295 LKVKADVKVGD------------------GRFPSTWCGDTQFDRILLDAPCSATGVIRRH 336
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR +DI +L++ +IL+ +W LKPGG LL+ TCS+ +E+ EQ F
Sbjct: 337 PDIKWLRRDSDINELAQLQSEILDAIWPHLKPGGTLLYATCSVLPDENSEQIRAFLTRTP 396
Query: 296 DSIRLNSPGQLLPTVNK---KQDYDGFFYS 322
D+ + Q P + + DGFFY+
Sbjct: 397 DAQLDGTGSQHTPGIQNLPGATEGDGFFYA 426
>gi|336122748|ref|YP_004564796.1| 16S rRNA m(5)C 967 methyltransferase [Vibrio anguillarum 775]
gi|335340471|gb|AEH31754.1| 16S rRNA m(5)C 967 methyltransferase [Vibrio anguillarum 775]
Length = 426
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 116/337 (34%), Positives = 195/337 (57%), Gaps = 34/337 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR +LR + E + + + + +P W + ++ YP QW+ ++ ++K
Sbjct: 113 LINAVLRSYLRDQ-EALDAIAVSHNAGKYGHPSWLLKLLQQAYPE--QWETVVQANNQKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N++ T Y LL +E ++ AIKL P ++ +P F G+ S+QD
Sbjct: 170 PMWLRVNRQHHTRDEYLALLASENIECSVHSHATDAIKLAVPCDVTLLPGFDRGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQLA L ++G +LD C+APGGKT H+LE D +++++D++ +RL + +NL+R
Sbjct: 230 AAAQLAIDYLQPKAGELILDCCAAPGGKTAHILEHTHDTEVVAIDSDATRLERVYDNLER 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L L+A +I D R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 290 LQLRADVICGDA------------------RYPEEWWHGEQFDRILLDAPCSATGVIRRH 331
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR +DI+ L++ +IL+ +WK LK GG +++ TCS+ +E+ Q F +
Sbjct: 332 PDIKWLRRGSDIEALAQLQSEILDAMWKQLKVGGTMVYATCSITPQENSLQVKAFLERTH 391
Query: 296 DSIRLNS----PG-QLLPTVNKKQDYDGFFYSLFQKR 327
++ + S PG Q+LP ++D DGF+Y++ K+
Sbjct: 392 NAQLVGSDREQPGRQILP---GEEDMDGFYYAVLTKQ 425
>gi|429083006|ref|ZP_19146057.1| Ribosomal RNA small subunit methyltransferase B [Cronobacter
condimenti 1330]
gi|426548193|emb|CCJ72098.1| Ribosomal RNA small subunit methyltransferase B [Cronobacter
condimenti 1330]
Length = 431
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 116/331 (35%), Positives = 193/331 (58%), Gaps = 32/331 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + + E+ + +P+W + +++ YP QW+ I + +++P
Sbjct: 119 LINGVLRQFQRQQEALVEE--FAGQEARYLHPLWLLRRLQAAYPQ--QWQAIAEANNERP 174
Query: 61 PLTLRINQRKTTLISYNKLLKKSGL--ETTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N++ + + LL+++G+ T + P A++L TP ++ +P F G+ ++QD
Sbjct: 175 PMWLRVNRQYHSRDEWITLLEENGMTGHTHLRYPDAVRLDTPAPVAALPGFDQGWVTVQD 234
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LL R+G +LD C+APGGKT H+LE A K+++VD + R+ + ENLKR
Sbjct: 235 ASAQGCVELLGPRNGETILDLCAAPGGKTTHILEAAPQAKVMAVDVDAQRITRVYENLKR 294
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L ++A + + D + + FDRIL D PC+ +GV+RR+PD
Sbjct: 295 LKMQAEVKVGD----------------GRAPATWCGDTQFDRILLDAPCSATGVIRRHPD 338
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI +L++ +IL+ +W+ LKPGG LL+ TCS+ EE+ EQ F + D+
Sbjct: 339 IKWLRRDSDITELAQLQSEILDAIWQHLKPGGTLLYATCSVLPEENSEQIRAFLRRTPDA 398
Query: 298 I-----RLNSPG-QLLPTVNKKQDYDGFFYS 322
+PG Q LP + DGFFY+
Sbjct: 399 QLDGTGSAQTPGIQNLPGAIEG---DGFFYA 426
>gi|422007064|ref|ZP_16354051.1| 16S rRNA methyltransferase B [Providencia rettgeri Dmel1]
gi|414097910|gb|EKT59562.1| 16S rRNA methyltransferase B [Providencia rettgeri Dmel1]
Length = 427
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 118/333 (35%), Positives = 195/333 (58%), Gaps = 29/333 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR F R++ ++ + N S + +P W + +++ YP+ W++I++ +++P
Sbjct: 117 LINGVLRSFQRQQVQLEERITNNT--SQYLHPSWLLKRLQTAYPD--DWQSIIEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + T Y LL++S + + P AI+L P ++S++P F +G+ ++QD
Sbjct: 173 PMWLRVNSQHHTATQYLNLLEQSEITAHLHSSHPNAIRLDEPTAVSRLPGFEDGWSTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
+AQ A LL+ ++G +LD C+APGGKT H+LE+A +I+VD + SRL + ENL R
Sbjct: 233 ISAQGCAELLEPQNGENILDLCAAPGGKTTHILELAPKANVIAVDIDESRLKRVKENLIR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L A +I D ++ + + + FDRIL D PC+ +GV+RR+PD
Sbjct: 293 LKQHAVVIQGDGTQPE----------------TWAQGQQFDRILLDAPCSATGVIRRHPD 336
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI +L++ +IL +W LKPGG L++ TCS+ EE+ +Q F H D+
Sbjct: 337 IKWLRRDSDINELAQLQSQILEAIWPYLKPGGTLVYATCSIMPEENGKQIHNFLSKHNDA 396
Query: 298 I---RLNSPGQLLPTVNKKQDYDGFFYSLFQKR 327
++ Q+LP+ N DGFFY+ K+
Sbjct: 397 CLNDGTDAGLQILPSTNGG---DGFFYARLVKK 426
>gi|261866823|ref|YP_003254745.1| methionyl-tRNA formyltransferase [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|261412155|gb|ACX81526.1| methionyl-tRNA formyltransferase [Aggregatibacter
actinomycetemcomitans D11S-1]
Length = 451
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 122/343 (35%), Positives = 192/343 (55%), Gaps = 34/343 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
++NA+LR FLR++ M + +W +P W +N++K YPN W+ I++ ++
Sbjct: 127 LVNAVLRRFLREQ-----ESMLAKVDKHWQTLHPDWLVNKLKKVYPN---WREIIEANNQ 178
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLETTIIG-PLAIKLHTPISISKIPKFFNGFCSIQ 117
KPP+ LR+N +K +L +Y LL ++ I P A+ L P S+ +P F G ++Q
Sbjct: 179 KPPMWLRVNTQKNSLETYRTLLTAQQMDAQITSHPQALGLTQPTSVQYLPLFAEGGVTVQ 238
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
D AQ AA LL ++G +LDAC+APGGKT H+LE+A +++++D +RL + ENL
Sbjct: 239 DLHAQWAALLLQPQNGELILDACAAPGGKTTHILELAPQAEVVALDVEENRLQRVKENLA 298
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
R+ +AT++ D + N + + K FDRIL D PC+ +GV+RR+P
Sbjct: 299 RMQQQATIVCGDAA--NPRAWLTKLGKSAVR---------FDRILLDAPCSATGVIRRHP 347
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR++ DI+ L + +IL LW LKP G LL+ TCS+ EE+ Q F ++ D
Sbjct: 348 DIKWLRKEADIEPLVELQEQILQALWPYLKPSGVLLYATCSVLAEENARQIERFLQHTPD 407
Query: 297 S--IRLNSPGQLLPT---------VNKKQDYDGFFYSLFQKRK 328
+ LN P ++L + + DGF+Y+ KR+
Sbjct: 408 AQPTALNLPEEVLARNQSAVGFQFIPQTDGGDGFYYAKLVKRE 450
>gi|365540339|ref|ZP_09365514.1| 16S rRNA methyltransferase B [Vibrio ordalii ATCC 33509]
Length = 426
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 116/337 (34%), Positives = 195/337 (57%), Gaps = 34/337 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR +LR + E + + + + +P W + ++ YP QW+ ++ ++K
Sbjct: 113 LINAVLRNYLRDQ-EALDAIAVSHNAGKYGHPSWLLKLLQQAYPE--QWETVVQANNQKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLA--IKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N++ T Y LL +E ++ A IKL P ++ +P F G+ S+QD
Sbjct: 170 PMWLRVNRQHHTRDEYLALLASENIECSVHSHAADAIKLAVPCDVTLLPGFDRGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQLA L ++G +LD C+APGGKT H+LE D +++++D++ +RL + +NL+R
Sbjct: 230 AAAQLAIDYLQPKAGELILDCCAAPGGKTAHILEHTHDTEVVAIDSDATRLERVYDNLER 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L L+A +I D R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 290 LQLRADVICGDA------------------RYPEEWWHGEQFDRILLDAPCSATGVIRRH 331
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR +DI+ L++ +IL+ +WK LK GG +++ TCS+ +E+ Q F +
Sbjct: 332 PDIKWLRRGSDIEALAQLQSEILDAMWKQLKVGGTMVYATCSVTPQENSLQVKAFLERTH 391
Query: 296 DSIRLNS----PG-QLLPTVNKKQDYDGFFYSLFQKR 327
++ + S PG Q+LP ++D DGF+Y++ K+
Sbjct: 392 NAQLVGSDREQPGRQILP---GEEDMDGFYYAVLTKQ 425
>gi|162420599|ref|YP_001605204.1| 16S rRNA methyltransferase B [Yersinia pestis Angola]
gi|162353414|gb|ABX87362.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
Angola]
Length = 435
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 118/331 (35%), Positives = 197/331 (59%), Gaps = 32/331 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + + N +S++ +P W + ++K YP QW+ ILD +++P
Sbjct: 123 LINGVLRQFQRQQVELLERAVNN--DSHYLHPSWLLARIKQAYPA--QWQQILDANNQRP 178
Query: 61 PLTLRINQRKTTLISYNKLLKKSGL--ETTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N++ + Y +LL ++ + E I A++L TP +++ +P F G+ ++QD
Sbjct: 179 PMWLRVNRQHHSRSEYLELLTQADINAEPHPIYRDAVRLITPCAVNHLPGFELGWVTVQD 238
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LLD ++G +LD C+APGGKT H+LE A +++VD + RL+ + ENL+R
Sbjct: 239 ASAQGCVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLSRVKENLQR 298
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L+A + + D + + ++ FDRIL D PC+ +GV+RR+PD
Sbjct: 299 LQLQAVVRVGDGRAPDT----------------WCGDQQFDRILLDAPCSATGVIRRHPD 342
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR DI +L++ +I+ +W LK GG L++ TCS+ EE+++Q F + H ++
Sbjct: 343 IKWLRRDRDISELAQLQSEIIEAIWPKLKHGGVLVYATCSILPEENQQQIAAFLQRHPEA 402
Query: 298 I-----RLNSPG-QLLPTVNKKQDYDGFFYS 322
+PG Q LP +D DGFFY+
Sbjct: 403 QLTETGTTAAPGKQNLP---HPEDGDGFFYA 430
>gi|401679004|ref|ZP_10810952.1| 16S rRNA methyltransferase B [Enterobacter sp. SST3]
gi|400213724|gb|EJO44662.1| 16S rRNA methyltransferase B [Enterobacter sp. SST3]
Length = 420
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 118/331 (35%), Positives = 190/331 (57%), Gaps = 32/331 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ N E+ + +P W + ++K YP QW++I D +++P
Sbjct: 108 LINGVLRQFQRQQDELLAEFAQN--EARFLHPDWLLKRLKKAYPQ--QWQDIADANNQRP 163
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLE--TTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T ++ LL+ +G+ T P A++L +P + +P F G+ ++QD
Sbjct: 164 PMWLRVNRNHHTRDAWLALLEDAGMSGFTHDAYPDAVRLASPAPVHALPGFDEGWVTVQD 223
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L+ ++G +LD C+APGGKT H+LE+A +++VD + RL+ + +NLKR
Sbjct: 224 ASAQGCMTWLEPKNGEQILDLCAAPGGKTTHILEVAPQASVMAVDVDEQRLSRVYDNLKR 283
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L +KA + D K + FDRIL D PC+ +GV+RR+PD
Sbjct: 284 LGMKAQVKQGDGRKPA----------------EWCGEAQFDRILLDAPCSATGVIRRHPD 327
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR DI +L++ IL+ +W+ LKPGG L++ TCS+ EE+ +Q F K D+
Sbjct: 328 IKWLRRDRDISELAQLQSDILDAIWQHLKPGGTLVYATCSVLPEENSQQIAAFLKRTPDA 387
Query: 298 IRLNS-----PGQL-LPTVNKKQDYDGFFYS 322
++ PGQ LP ++ DGFFY+
Sbjct: 388 ALHDTGTPECPGQQNLPGA---EEGDGFFYA 415
>gi|415770731|ref|ZP_11485000.1| methionyl-tRNA formyltransferase [Aggregatibacter
actinomycetemcomitans D17P-2]
gi|348656637|gb|EGY74246.1| methionyl-tRNA formyltransferase [Aggregatibacter
actinomycetemcomitans D17P-2]
Length = 451
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 122/343 (35%), Positives = 192/343 (55%), Gaps = 34/343 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
++NA+LR FLR++ M + +W +P W +N++K YPN W+ I++ ++
Sbjct: 127 LVNAVLRRFLREQ-----ESMLAKVDKHWQTLHPDWLVNKLKKVYPN---WREIIEANNQ 178
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLETTIIG-PLAIKLHTPISISKIPKFFNGFCSIQ 117
KPP+ LR+N +K +L +Y LL ++ I P A+ L P S+ +P F G ++Q
Sbjct: 179 KPPMWLRVNTQKNSLETYRTLLTAQQMDAQITSHPQALGLTQPTSVQYLPLFAEGGVTVQ 238
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
D AQ AA LL ++G +LDAC+APGGKT H+LE+A +++++D +RL + ENL
Sbjct: 239 DLHAQWAALLLQPQNGELILDACAAPGGKTTHILELAPQAEVVALDVEENRLQRVKENLA 298
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
R+ +AT++ D + N + + K FDRIL D PC+ +GV+RR+P
Sbjct: 299 RMQQQATIVCGDAA--NPRAWLTKLGKSAVR---------FDRILLDAPCSATGVIRRHP 347
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR++ DI+ L + +IL LW LKP G LL+ TCS+ EE+ Q F ++ D
Sbjct: 348 DIKWLRKEADIEPLVELQEQILQALWPYLKPSGVLLYATCSVLAEENARQIERFLQHTPD 407
Query: 297 S--IRLNSPGQLLPT---------VNKKQDYDGFFYSLFQKRK 328
+ LN P ++L + + DGF+Y+ KR+
Sbjct: 408 AQPTALNLPEEVLARNQSAVGFQFIPQTDGGDGFYYAKLVKRE 450
>gi|224493303|sp|A9R925.2|RSMB_YERPG RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
Length = 429
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 118/331 (35%), Positives = 197/331 (59%), Gaps = 32/331 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + + N +S++ +P W + ++K YP QW+ ILD +++P
Sbjct: 117 LINGVLRQFQRQQVELLERAVNN--DSHYLHPSWLLARIKQAYPA--QWQQILDANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGL--ETTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N++ + Y +LL ++ + E I A++L TP +++ +P F G+ ++QD
Sbjct: 173 PMWLRVNRQHHSRSEYLELLTQADINAEPHPIYRDAVRLITPCAVNHLPGFELGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LLD ++G +LD C+APGGKT H+LE A +++VD + RL+ + ENL+R
Sbjct: 233 ASAQGCVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLSRVKENLQR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L+A + + D + + ++ FDRIL D PC+ +GV+RR+PD
Sbjct: 293 LQLQAVVRVGDGRAPDT----------------WCGDQQFDRILLDAPCSATGVIRRHPD 336
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR DI +L++ +I+ +W LK GG L++ TCS+ EE+++Q F + H ++
Sbjct: 337 IKWLRRDRDISELAQLQSEIIEAIWPKLKHGGVLVYATCSILPEENQQQIAAFLQRHPEA 396
Query: 298 I-----RLNSPG-QLLPTVNKKQDYDGFFYS 322
+PG Q LP +D DGFFY+
Sbjct: 397 QLTETGTTAAPGKQNLP---HPEDGDGFFYA 424
>gi|421728647|ref|ZP_16167799.1| 16S rRNA methyltransferase B [Klebsiella oxytoca M5al]
gi|410370556|gb|EKP25285.1| 16S rRNA methyltransferase B [Klebsiella oxytoca M5al]
Length = 429
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 118/334 (35%), Positives = 199/334 (59%), Gaps = 38/334 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ ++ E + +P W + +++ YP QW+ I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FSRSEIRFLHPSWLLKRLQKAYPA--QWEAIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLE--TTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL+++G++ T P A++L TP+ + +P F G+ ++QD
Sbjct: 173 PMWLRVNRVHHSRDSWLALLEEAGMKGFTHPAYPDAVRLETPVPVHALPGFEAGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LD ++ Y+LD C+APGGKT H+LE A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTFLDPQNDEYILDLCAAPGGKTTHILEAAPEAQVLAVDVDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ +Q F +
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILDAVWPHLKSGGTLVYATCSVLPEENSQQIKAFLQRTA 394
Query: 296 DSIRLNS------PGQL-LPTVNKKQDYDGFFYS 322
D++ LN PGQ LP + DGFFY+
Sbjct: 395 DAV-LNETGDADLPGQQNLPGAEQG---DGFFYA 424
>gi|261250606|ref|ZP_05943181.1| ribosomal RNA small subunit methyltransferase B [Vibrio orientalis
CIP 102891 = ATCC 33934]
gi|417954290|ref|ZP_12597327.1| 16S rRNA methyltransferase B [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|260939175|gb|EEX95162.1| ribosomal RNA small subunit methyltransferase B [Vibrio orientalis
CIP 102891 = ATCC 33934]
gi|342815558|gb|EGU50473.1| 16S rRNA methyltransferase B [Vibrio orientalis CIP 102891 = ATCC
33934]
Length = 426
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 117/336 (34%), Positives = 198/336 (58%), Gaps = 34/336 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR +LR + E+ K + + + +P W +N ++ +YP+ W+ +++ + K
Sbjct: 113 LINAVLRSYLRDQEEL-DEKAVSHNAGKYGHPNWLLNMLRESYPD--SWEQLIEANNSKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTII--GPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N++ T Y +LLK +E +I AIKL +P ++ +P F G+ S+QD
Sbjct: 170 PMWLRVNRQHHTRDEYLELLKDENIEFSIHPEAADAIKLASPCDVTLLPGFDRGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQL+ L ++G +LD C+APGGKT H+LE D +++++D + RL+ + +NL+R
Sbjct: 230 AAAQLSVNYLQPQNGELILDCCAAPGGKTAHILEHTEDTEVVAIDCDAKRLDRVYDNLER 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L L+A +I D R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 290 LQLRADVICGDA------------------RYPQEWWTGEKFDRILLDAPCSATGVIRRH 331
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR NDI L++ +I++ +W LK GG +++ TCS+ +E+ Q F +
Sbjct: 332 PDIKWLRRANDIDALAELQSEIMDAMWGQLKVGGTMVYATCSITPQENVLQVKAFLERTD 391
Query: 296 DSI----RLNSPG-QLLPTVNKKQDYDGFFYSLFQK 326
++ +N+PG Q+LP ++D DGF+Y++ K
Sbjct: 392 NATLVGSDINNPGRQILP---GEEDMDGFYYAVLIK 424
>gi|416075607|ref|ZP_11585098.1| LOW QUALITY PROTEIN: methionyl-tRNA formyltransferase
[Aggregatibacter actinomycetemcomitans serotype b str.
SCC1398]
gi|348006092|gb|EGY46556.1| LOW QUALITY PROTEIN: methionyl-tRNA formyltransferase
[Aggregatibacter actinomycetemcomitans serotype b str.
SCC1398]
Length = 451
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 122/343 (35%), Positives = 192/343 (55%), Gaps = 34/343 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
++NA+LR FLR++ M + +W +P W +N++K YPN W+ I++ ++
Sbjct: 127 LVNAVLRRFLREQ-----ESMLAKVDKHWQTLHPDWLVNKLKKVYPN---WREIIEANNQ 178
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLETTIIG-PLAIKLHTPISISKIPKFFNGFCSIQ 117
KPP+ LR+N +K +L +Y LL ++ I P A+ L P S+ +P F G ++Q
Sbjct: 179 KPPMWLRVNTQKNSLETYRTLLTAQQMDAQITSHPQALGLTQPASVQYLPLFAEGGVTVQ 238
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
D AQ AA LL ++G +LDAC+APGGKT H+LE+A +++++D +RL + ENL
Sbjct: 239 DLHAQWAALLLQPQNGELILDACAAPGGKTTHILELAPQAEVVALDVEENRLQRVKENLA 298
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
R+ +AT++ D + N + + K FDRIL D PC+ +GV+RR+P
Sbjct: 299 RMQQQATIVCGDAA--NPRAWLTKLGKSAVR---------FDRILLDAPCSATGVIRRHP 347
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR++ DI+ L + +IL LW LKP G LL+ TCS+ EE+ Q F ++ D
Sbjct: 348 DIKWLRKEADIEPLVELQEQILQALWPYLKPSGVLLYATCSVLAEENARQIERFLQHTPD 407
Query: 297 S--IRLNSPGQLLPT---------VNKKQDYDGFFYSLFQKRK 328
+ LN P ++L + + DGF+Y+ KR+
Sbjct: 408 AQPTALNLPEEVLARNQSAVGFQFIPQTDGGDGFYYAKLVKRE 450
>gi|389839361|ref|YP_006341445.1| 16S rRNA methyltransferase B [Cronobacter sakazakii ES15]
gi|387849837|gb|AFJ97934.1| 16S rRNA methyltransferase B [Cronobacter sakazakii ES15]
Length = 462
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 117/333 (35%), Positives = 193/333 (57%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ ++ ++ W +P+W +N+ + +P +W+ +++ +++P
Sbjct: 150 LINGVLRQFQRQQDELLAE--FSGQDARWLHPMWLLNRFQTAWPR--EWQAVVEANNERP 205
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N++ + + KLL+++G+ I P A++L P +S +P F G+ ++QD
Sbjct: 206 PMWLRVNRQHYSRDEWLKLLEENGMTGHIHPRYPDAVRLDAPAPVSALPGFEQGWVTVQD 265
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LL ++G +LD C+APGGKT H+LE A +++VD + R++ + ENLKR
Sbjct: 266 ASAQGCVELLAPQNGETILDLCAAPGGKTTHILEAAPQASVMAVDVDAQRISRVYENLKR 325
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KA + + D RF + FDRIL D PC+ +GV+RR+
Sbjct: 326 LKMKADVKVGD------------------GRFPSTWCGETQFDRILLDAPCSATGVIRRH 367
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR +DI +L++ +IL+ +W LKPGG LL+ TCS+ EE+ EQ F
Sbjct: 368 PDIKWLRRDSDINELAQLQSEILDAIWPHLKPGGTLLYATCSVLPEENSEQIRAFLSRTP 427
Query: 296 DSI-----RLNSPG-QLLPTVNKKQDYDGFFYS 322
D+ +PG Q LP + DGFFY+
Sbjct: 428 DAQLDGTGSTQTPGIQNLPGAIEG---DGFFYA 457
>gi|444347193|ref|ZP_21155138.1| LOW QUALITY PROTEIN: methionyl-tRNA formyltransferase
[Aggregatibacter actinomycetemcomitans serotype c str.
AAS4A]
gi|443540761|gb|ELT51288.1| LOW QUALITY PROTEIN: methionyl-tRNA formyltransferase
[Aggregatibacter actinomycetemcomitans serotype c str.
AAS4A]
Length = 769
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 122/343 (35%), Positives = 192/343 (55%), Gaps = 34/343 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
++NA+LR FLR++ M + +W +P W +N++K YPN W+ I++ ++
Sbjct: 445 LVNAVLRRFLREQ-----ESMLAKVDKHWQTLHPDWLVNKLKKVYPN---WREIIEANNQ 496
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLETTIIG-PLAIKLHTPISISKIPKFFNGFCSIQ 117
KPP+ LR+N +K +L +Y LL ++ I P A+ L P S+ +P F G ++Q
Sbjct: 497 KPPMWLRVNTQKNSLETYRTLLTAQQMDAQITSHPQALGLTQPTSVQYLPLFAEGGVTVQ 556
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
D AQ AA LL ++G +LDAC+APGGKT H+LE+A +++++D +RL + ENL
Sbjct: 557 DLHAQWAALLLQPQNGELILDACAAPGGKTTHILELAPQAEVVALDVEENRLQRVKENLA 616
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
R+ +AT++ D + N + + K FDRIL D PC+ +GV+RR+P
Sbjct: 617 RMQQQATIVCGDAA--NPRAWLTKLGKSAVR---------FDRILLDAPCSATGVIRRHP 665
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR++ DI+ L + +IL LW LKP G LL+ TCS+ EE+ Q F ++ D
Sbjct: 666 DIKWLRKEADIEPLVELQEQILQALWPYLKPSGVLLYATCSVLAEENARQIERFLQHTPD 725
Query: 297 S--IRLNSPGQLLPT---------VNKKQDYDGFFYSLFQKRK 328
+ LN P ++L + + DGF+Y+ KR+
Sbjct: 726 AQPTALNLPEEVLARNQSAVGFQFIPQTDGGDGFYYAKLVKRE 768
>gi|421496290|ref|ZP_15943525.1| rsmB [Aeromonas media WS]
gi|407184718|gb|EKE58540.1| rsmB [Aeromonas media WS]
Length = 430
Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 123/336 (36%), Positives = 186/336 (55%), Gaps = 37/336 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR F R E+ ++ + +P W +++ YP W+ I++ +++P
Sbjct: 113 LINGVLRNFQRS-AEVILLRIDRVPSIRLGHPEWLTKRLRQAYPE--DWEFIMEANNQRP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTI--IGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ +R N ++ + + + G+ G I L P ++K+P F G CS+QD
Sbjct: 170 PMWIRNNSQRQSREQMLARMAEVGINAVAGEEGEDCILLERPCDVTKLPGFETGDCSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEI--ADIKLISVDNNLSRLNMISENLK 176
AAQ AA LLD + G +VLDAC+APGGKT HLLE+ A +++VD + +RL + ENL
Sbjct: 230 GAAQQAARLLDPQPGEWVLDACAAPGGKTAHLLELQPALAGVVAVDADENRLKRVQENLD 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
R+ L A +I D S +L ++ FDRIL D PC+ +GV+RR+P
Sbjct: 290 RIGLTARVIHGDASTPDL----------------WWPEGQFDRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLRR DI++L++ C+ILN LW LK GG LL+ TCS+ EE+ +Q F + KD
Sbjct: 334 DIKWLRRDQDIRELAELQCRILNALWAKLKSGGTLLYATCSVLPEENRDQIRAFLADTKD 393
Query: 297 SIRL---------NSPG-QLLPTVNKKQDYDGFFYS 322
+ RL + PG Q LP + + DGF+Y+
Sbjct: 394 A-RLVPLHQQDNPDCPGRQFLPG---EAEMDGFYYA 425
>gi|311277757|ref|YP_003939988.1| sun protein [Enterobacter cloacae SCF1]
gi|308746952|gb|ADO46704.1| sun protein [Enterobacter cloacae SCF1]
Length = 429
Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 120/338 (35%), Positives = 195/338 (57%), Gaps = 36/338 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + +S + +P W + +++ YP QW+ +L+ +++P
Sbjct: 117 LINGVLRQFQRQQEALLAE--FATSDSRFLHPDWLVKRIRKAYPQ--QWQAVLEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLE--TTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T ++ LL+ SGL+ T P A++L TP S+ +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHTRDAWLTLLETSGLKGYTHPRYPDAVRLETPTSVQALPGFDAGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L +G +LD C+APGGKT H+LE+A + +++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMRFLMPENGETILDLCAAPGGKTTHILEVAPEANVLAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KA + K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKAEV------------------KQGDGRYPSQWCDGRQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
DI WLRR DI +L+ +IL+ +W LKPGG L++ TCS+ EE+ EQ F K
Sbjct: 335 SDIKWLRRDRDIAELALLQAQILDAVWPHLKPGGTLVYATCSILPEENAEQIAAFLKRTG 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 327
D++ + PG Q LP ++ DGFFY+ KR
Sbjct: 395 DAVLSETGTPEQPGLQNLPAADEG---DGFFYAKLIKR 429
>gi|397660265|ref|YP_006500967.1| ribosomal RNA small subunit methyltransferase B [Klebsiella oxytoca
E718]
gi|394348312|gb|AFN34433.1| Ribosomal RNA small subunit methyltransferase B [Klebsiella oxytoca
E718]
Length = 431
Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 113/330 (34%), Positives = 196/330 (59%), Gaps = 30/330 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ ++ E + +P W + +++ YP QW+ I++ +++P
Sbjct: 119 LINGVLRQFQRQQEELLSE--FSRSEIRFLHPSWLLKRLQKAYPA--QWEAIVEANNQRP 174
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLE--TTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ S+ LL+K+G++ T P A+++ TP+ + +P F G+ ++QD
Sbjct: 175 PMWLRVNRVHHPRDSWLALLEKAGMKGFTHPAYPDAVRMETPVPVHALPGFEEGWVTVQD 234
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LD ++G +LD C+APGGKT H+LE A + ++++VD + RL+ + +NLKR
Sbjct: 235 ASAQGCITFLDPKNGEQILDLCAAPGGKTTHILEAAPEAQVLAVDVDEQRLSRVYDNLKR 294
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 295 LGMKATV------------------KQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRH 336
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ +Q F +
Sbjct: 337 PDIKWLRRDRDIAELAQLQSEILDAVWPHLKTGGTLVYATCSVLPEENSQQIKAFLQRTA 396
Query: 296 DSIRLNSPGQLLP---TVNKKQDYDGFFYS 322
D++ + LP + ++ DGFFY+
Sbjct: 397 DAVLSETGSADLPGQQNLPGAEEGDGFFYA 426
>gi|448244229|ref|YP_007408282.1| 16S rRNA m(5)C967 methyltransferase, SAM-dependent [Serratia
marcescens WW4]
gi|445214593|gb|AGE20263.1| 16S rRNA m(5)C967 methyltransferase, SAM-dependent [Serratia
marcescens WW4]
Length = 429
Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 115/328 (35%), Positives = 185/328 (56%), Gaps = 26/328 (7%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + N +S + +P W + +++ YP W+ I+D ++KP
Sbjct: 117 LINGVLRQFQRQQEELLQRAANN--DSRYLHPSWLLKRIQQAYP--ANWEQIVDANNQKP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGL--ETTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T +Y +LL +G+ ET A++L P +++ +P F G+ ++QD
Sbjct: 173 PMWLRVNRLHHTRDAYLQLLNDAGIAAETHADYADAVRLLAPCAVTDLPGFAEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LLD + G +LD C+APGGKT H+LE A +++VD + RL + ENL+R
Sbjct: 233 ASAQGCVDLLDPQDGEQILDLCAAPGGKTTHILEAAPKAHVMAVDIDEQRLARVKENLQR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L A + L D ++ +K FDRIL D PC+ +GV+RR+PD
Sbjct: 293 LRLHAEVKLGD----------------GRTPQQWCGDKQFDRILLDAPCSATGVIRRHPD 336
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR DI +L+ +IL +W LK GG +++ TCS+ +E+ Q F + H D+
Sbjct: 337 IKWLRRDRDIAELAALQAEILEAVWPHLKSGGVMVYATCSILPDENSNQIAAFLQRHADA 396
Query: 298 IRLNSPGQLLP---TVNKKQDYDGFFYS 322
+ + P + +D DGFFY+
Sbjct: 397 KLVETGDAQRPGRQNIPHPEDGDGFFYA 424
>gi|444337068|ref|ZP_21151100.1| LOW QUALITY PROTEIN: methionyl-tRNA formyltransferase
[Aggregatibacter actinomycetemcomitans serotype b str.
SCC4092]
gi|443547680|gb|ELT57132.1| LOW QUALITY PROTEIN: methionyl-tRNA formyltransferase
[Aggregatibacter actinomycetemcomitans serotype b str.
SCC4092]
Length = 770
Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 122/343 (35%), Positives = 192/343 (55%), Gaps = 34/343 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
++NA+LR FLR++ M + +W +P W +N++K YPN W+ I++ ++
Sbjct: 446 LVNAVLRRFLREQ-----ESMLAKVDKHWQTLHPDWLVNKLKKVYPN---WREIIEANNQ 497
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLETTIIG-PLAIKLHTPISISKIPKFFNGFCSIQ 117
KPP+ LR+N +K +L +Y LL ++ I P A+ L P S+ +P F G ++Q
Sbjct: 498 KPPMWLRVNTQKNSLETYRTLLTAQQMDAQITSHPQALGLTQPASVQYLPLFAEGGVTVQ 557
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
D AQ AA LL ++G +LDAC+APGGKT H+LE+A +++++D +RL + ENL
Sbjct: 558 DLHAQWAALLLQPQNGELILDACAAPGGKTTHILELAPQAEVVALDVEENRLQRVKENLA 617
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
R+ +AT++ D + N + + K FDRIL D PC+ +GV+RR+P
Sbjct: 618 RMQQQATIVCGDAA--NPRAWLTKLGKSAVR---------FDRILLDAPCSATGVIRRHP 666
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR++ DI+ L + +IL LW LKP G LL+ TCS+ EE+ Q F ++ D
Sbjct: 667 DIKWLRKEADIEPLVELQEQILQALWPYLKPSGVLLYATCSVLAEENARQIERFLQHTPD 726
Query: 297 S--IRLNSPGQLLPT---------VNKKQDYDGFFYSLFQKRK 328
+ LN P ++L + + DGF+Y+ KR+
Sbjct: 727 AQPTALNLPEEVLARNQSAVGFQFIPQTDGGDGFYYAKLVKRE 769
>gi|381157104|ref|ZP_09866338.1| ribosomal RNA small subunit methyltransferase RsmB [Thiorhodovibrio
sp. 970]
gi|380880967|gb|EIC23057.1| ribosomal RNA small subunit methyltransferase RsmB [Thiorhodovibrio
sp. 970]
Length = 465
Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 115/340 (33%), Positives = 189/340 (55%), Gaps = 36/340 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA LR F+R++ E+ S + + +P W + +++ +P W+ ++ +++
Sbjct: 147 LLNATLRRFVRERAELCAS-IEQDEAARTLFPPWLLARLQTAWPE--HWQQLIAASNERA 203
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + +Y + L +G++ + + P ++LH P+ +S++P + +G S+QD
Sbjct: 204 PMFLRVNRLRIAQDAYREQLHTAGIDASPLADCPDGLQLHAPMPVSQLPGYRDGLVSVQD 263
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA--DIKLISVDNNLSRLNMISENLK 176
A AQ AA LL G VLDAC+APG KT HL E+A +KL ++D++ SRL ++ NL
Sbjct: 264 AGAQHAAALLGAEPGQRVLDACAAPGNKTAHLQELAGNQLKLWALDHDSSRLQSLATNLA 323
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A + +D T R + + Y DRIL D PC+G+GV+RR+P
Sbjct: 324 RLKLHAEIHQAD---------------ATQPRGDWAEQDY-DRILLDAPCSGTGVIRRHP 367
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLRR DI L+ ++L+ LW +++P G++L+VTCSL EE+ +Q F H D
Sbjct: 368 DIKWLRRDQDIAALADTQARLLDALWPLIRPRGEMLYVTCSLLPEENTQQIAAFLARHPD 427
Query: 297 SIRLNSP----------GQLLPTVNKKQDYDGFFYSLFQK 326
+ P Q LP+ + DGFF++ K
Sbjct: 428 AREARIPVDLGLECQYGRQRLPSAHGS---DGFFFARLVK 464
>gi|375104244|ref|ZP_09750505.1| tRNA/rRNA cytosine-C5-methylase [Burkholderiales bacterium
JOSHI_001]
gi|374664975|gb|EHR69760.1| tRNA/rRNA cytosine-C5-methylase [Burkholderiales bacterium
JOSHI_001]
Length = 449
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 121/343 (35%), Positives = 192/343 (55%), Gaps = 37/343 (10%)
Query: 2 INAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
+NA+LR F+R++ + ++ + ++ N+P+WW+ ++K +P QW+ +L ++ PP
Sbjct: 125 VNAVLRRFVRERESLVEAARHQPVAAF-NHPLWWVEKIKQDWPA--QWQALLLAANEHPP 181
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
LR+N R+ Y + L G + + A+ L P ++ +P F G S+QD AA
Sbjct: 182 FVLRVNARRGNAAQYVQRLAALGRQGVALDEFAVWLPKPCPVADLPGFAEGEVSVQDLAA 241
Query: 122 QLAAPLL---DIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRL 178
Q A LL + G VLDACSAPGGKT LE AD+ L+++D++ RL + + L RL
Sbjct: 242 QRAVQLLLSAGLPPGARVLDACSAPGGKTAQWLERADLDLLALDSDPFRLARVQDTLNRL 301
Query: 179 NLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDI 238
+LKA L SD + +++ + FD IL D PC+ SG+VRR+PD+
Sbjct: 302 HLKARLAASDARLVA----------------QWWDGQPFDAILLDAPCSASGIVRRHPDV 345
Query: 239 PWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH-KDS 297
WLRR +D+ L++ ++L+ LW ++KPGG LL+VTCSL+ E ++Q F + H D+
Sbjct: 346 RWLRRPDDVVALARIQAELLDALWPLVKPGGVLLYVTCSLFKREGQQQIDAFLQRHAADA 405
Query: 298 IRLN--SPGQLLPTVNKKQDY------------DGFFYSLFQK 326
RL+ +PG +LP + DGFFY+L +K
Sbjct: 406 PRLDPLAPGHVLPLPDNSGSAPAWGAAAPPVTGDGFFYALLRK 448
>gi|217971245|ref|YP_002355996.1| sun protein [Shewanella baltica OS223]
gi|217496380|gb|ACK44573.1| sun protein [Shewanella baltica OS223]
Length = 428
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 116/302 (38%), Positives = 177/302 (58%), Gaps = 26/302 (8%)
Query: 29 WNYPIWWINQVKITYPNFFQWKNILDVGHKKPPLTLRINQRKTTLISYNKLLKKSGLETT 88
+N P W I ++K YP QW++I+ H++PP+ LR N+ + Y L + +E +
Sbjct: 138 YNTPAWLIKRLKEAYPE--QWQDIIQQSHERPPMWLRNNRLSQSRTEYLAALAELEIEAS 195
Query: 89 IIGPL-AIKLHTPISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKT 147
AI L P ++ +P+F G S+QD AAQ AA LL ++ +LDAC+APGGK+
Sbjct: 196 EGSSADAILLAHPKDVATLPRFHEGAASVQDGAAQWAATLLAPQANELILDACAAPGGKS 255
Query: 148 CHLLEIA-DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTN 206
CHLLE+ IKL++VD + RL + +NL RL+LKA LI D + I+
Sbjct: 256 CHLLELEPSIKLVAVDFDAKRLERVQQNLDRLSLKAELIHGDAANID------------- 302
Query: 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLK 266
+++ FDRIL D PC+ +GV+RR+PDI WLR+ +DI++L++ +IL++ WK LK
Sbjct: 303 ---SWWQGGQFDRILLDAPCSATGVIRRHPDIKWLRKNHDIEELAELQQQILDHCWKWLK 359
Query: 267 PGGKLLFVTCSLWFEESEEQAIIFSKNHKDS-----IRLNSPGQLLPTVNKKQD-YDGFF 320
PGG LL+ TCS+ +E+ +Q F + D+ + NSP + + QD DGF+
Sbjct: 360 PGGTLLYATCSILPQENRDQISAFLERTADAKLDKLSQQNSPQDIGWQITPGQDNMDGFY 419
Query: 321 YS 322
Y+
Sbjct: 420 YA 421
>gi|91791391|ref|YP_561042.1| sun protein [Shewanella denitrificans OS217]
gi|91713393|gb|ABE53319.1| sun protein [Shewanella denitrificans OS217]
Length = 428
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 120/336 (35%), Positives = 186/336 (55%), Gaps = 30/336 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++N +LR R++ E+ +N P W I +++ YP W+ +++ H++P
Sbjct: 115 VVNGVLRNIQRQEPELNTDS----DTLKYNTPAWLIKRLQQAYPQ--DWQQVIEQSHERP 168
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTI-IGPLAIKLHTPISISKIPKFFNGFCSIQDA 119
P+ LR N+ T +Y L +E + + P AI L +P + ++P F +G S+QD
Sbjct: 169 PMWLRNNRLVQTRDAYLASLTNENIEASAGLSPDAILLESPTDVLQLPGFMSGSASVQDG 228
Query: 120 AAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKRL 178
AAQ AA LL ++ VLDAC+APGGKTCHLLEIA +I L +VD +L RL + +NL RL
Sbjct: 229 AAQWAATLLAPQANEVVLDACAAPGGKTCHLLEIAPNISLTAVDFDLKRLERVQQNLDRL 288
Query: 179 NLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDI 238
L A +I D + I+ +++ FDRIL D PC+ +GV+RR+PDI
Sbjct: 289 KLTAQVIHGDAANID----------------SWWQGDKFDRILLDAPCSATGVIRRHPDI 332
Query: 239 PWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSI 298
WLR+ +DI +L+ +IL++ W+ LKPGG LL+ TCS+ EE+ +Q F D+
Sbjct: 333 KWLRKNSDIDELATLQMQILDHCWQWLKPGGTLLYATCSILPEENSQQINAFLTRTADAS 392
Query: 299 RLNSPGQLLPT------VNKKQDYDGFFYSLFQKRK 328
+ Q P + + + DGF+Y+ K +
Sbjct: 393 LVAISEQKNPADIGWQILPGQDNMDGFYYARLVKAR 428
>gi|415756700|ref|ZP_11481140.1| methionyl-tRNA formyltransferase [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|416035793|ref|ZP_11573563.1| LOW QUALITY PROTEIN: methionyl-tRNA formyltransferase
[Aggregatibacter actinomycetemcomitans serotype a str.
H5P1]
gi|416049156|ref|ZP_11576475.1| LOW QUALITY PROTEIN: methionyl-tRNA formyltransferase
[Aggregatibacter actinomycetemcomitans serotype d str.
I63B]
gi|429733358|ref|ZP_19267598.1| ribosomal RNA small subunit methyltransferase B [Aggregatibacter
actinomycetemcomitans Y4]
gi|347991972|gb|EGY33410.1| LOW QUALITY PROTEIN: methionyl-tRNA formyltransferase
[Aggregatibacter actinomycetemcomitans serotype d str.
I63B]
gi|347997201|gb|EGY38225.1| LOW QUALITY PROTEIN: methionyl-tRNA formyltransferase
[Aggregatibacter actinomycetemcomitans serotype a str.
H5P1]
gi|348655722|gb|EGY71162.1| methionyl-tRNA formyltransferase [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|429154960|gb|EKX97665.1| ribosomal RNA small subunit methyltransferase B [Aggregatibacter
actinomycetemcomitans Y4]
Length = 451
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 123/343 (35%), Positives = 191/343 (55%), Gaps = 34/343 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
++NA+LR FLR++ M + +W +P W +N++K YPN W+ I++ ++
Sbjct: 127 LVNAVLRRFLREQ-----ESMLAKVDKHWQTLHPDWLVNKLKKVYPN---WREIIEANNQ 178
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLETTIIG-PLAIKLHTPISISKIPKFFNGFCSIQ 117
KPP+ LR+N +K +L +Y LL ++ I P A+ L P S+ +P F G ++Q
Sbjct: 179 KPPMWLRVNTQKNSLETYRTLLTAQQMDAQITSHPQALGLTQPTSVQYLPLFAEGGVTVQ 238
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
D AQ AA LL ++G +LDAC+APGGKT H+LE+A +++++D +RL + ENL
Sbjct: 239 DLHAQWAALLLQPQNGELILDACAAPGGKTTHILELAPQAEVVALDVEENRLQRVKENLA 298
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
R+ +AT++ D + N + + K FDRIL D PC+ +GVVRR+P
Sbjct: 299 RMQQQATIVCGDAA--NPRAWLTKLGKSAVR---------FDRILLDAPCSATGVVRRHP 347
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR++ DI+ L + +IL LW LKP G LL+ TCS+ EE+ Q F + D
Sbjct: 348 DIKWLRKEADIEPLVELQEQILQALWPYLKPSGVLLYATCSVLAEENARQIERFLQRTPD 407
Query: 297 S--IRLNSPGQLLPT---------VNKKQDYDGFFYSLFQKRK 328
+ LN P ++L + + DGF+Y+ KR+
Sbjct: 408 AQLAVLNLPEEVLARNQSAVGFQFIPQTDGGDGFYYAKLVKRE 450
>gi|238921411|ref|YP_002934926.1| ribosomal RNA small subunit methyltransferase B, putative
[Edwardsiella ictaluri 93-146]
gi|238870980|gb|ACR70691.1| ribosomal RNA small subunit methyltransferase B, putative
[Edwardsiella ictaluri 93-146]
Length = 430
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 116/332 (34%), Positives = 190/332 (57%), Gaps = 34/332 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + H S+W +P W + +++ YP QW I++ +++P
Sbjct: 118 LINGVLRQFQRQQEALLLQSQQ--HASHWLHPSWLLKRLQHAYPE--QWPAIVEANNQRP 173
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R T +Y LL+++G+E P AI+L ++++P F +G+ ++QD
Sbjct: 174 PMWLRVNRRHHTRDAYLTLLQQAGIEAVAHDYFPDAIRLLVAQPVTRLPGFEHGWVTVQD 233
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ + LLD + +LD C APGGKT H+LE A +++VD + +RL + ENL+R
Sbjct: 234 ASAQHSVDLLDPQDSEQILDLCCAPGGKTTHILEAAPKAHVLAVDVDETRLKRVRENLQR 293
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L A + D +T + + + FDRIL D PC+ +GV+RR+PD
Sbjct: 294 LQQHAEIRCGD--------------GRTPDEW--ASGRQFDRILLDAPCSATGVIRRHPD 337
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI +L+ +I++ +W LK GG +++ TCS+ +E++EQ + F H D+
Sbjct: 338 IKWLRRDSDITELAALQREIIDAVWPFLKSGGVMVYATCSILPQENQEQILTFLSRHPDA 397
Query: 298 IRLNSPG-------QLLPTVNKKQDYDGFFYS 322
RL+ G Q LP + DGFFY+
Sbjct: 398 -RLSDTGDIQRPGLQFLPRPDAG---DGFFYT 425
>gi|126172286|ref|YP_001048435.1| sun protein [Shewanella baltica OS155]
gi|386338963|ref|YP_006035329.1| sun protein [Shewanella baltica OS117]
gi|125995491|gb|ABN59566.1| sun protein [Shewanella baltica OS155]
gi|334861364|gb|AEH11835.1| sun protein [Shewanella baltica OS117]
Length = 428
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 116/302 (38%), Positives = 177/302 (58%), Gaps = 26/302 (8%)
Query: 29 WNYPIWWINQVKITYPNFFQWKNILDVGHKKPPLTLRINQRKTTLISYNKLLKKSGLETT 88
+N P W I ++K YP QW++I+ H++PP+ LR N+ + Y L + +E +
Sbjct: 138 YNTPAWLIKRLKEAYPE--QWQDIIQQSHERPPMWLRNNRLSQSRAEYLAALAELEIEAS 195
Query: 89 IIGPL-AIKLHTPISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKT 147
AI L P ++ +P+F G S+QD AAQ AA LL ++ +LDAC+APGGK+
Sbjct: 196 EGSSADAILLAHPKDVATLPRFHEGAASVQDGAAQWAATLLAPQANELILDACAAPGGKS 255
Query: 148 CHLLEIA-DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTN 206
CHLLE+ IKL++VD + RL + +NL RL+LKA LI D + I+
Sbjct: 256 CHLLELEPSIKLVAVDFDAKRLERVQQNLDRLSLKAELIHGDAANID------------- 302
Query: 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLK 266
+++ FDRIL D PC+ +GV+RR+PDI WLR+ +DI++L++ +IL++ WK LK
Sbjct: 303 ---SWWQGGQFDRILLDAPCSATGVIRRHPDIKWLRKNHDIEELAELQQQILDHCWKWLK 359
Query: 267 PGGKLLFVTCSLWFEESEEQAIIFSKNHKDS-----IRLNSPGQLLPTVNKKQD-YDGFF 320
PGG LL+ TCS+ +E+ +Q F + D+ + NSP + + QD DGF+
Sbjct: 360 PGGTLLYATCSILPQENRDQISAFLERTADAKLDTLSQQNSPQDIGWQITPGQDNMDGFY 419
Query: 321 YS 322
Y+
Sbjct: 420 YA 421
>gi|424801328|ref|ZP_18226870.1| Ribosomal RNA small subunit methyltransferase B [Cronobacter
sakazakii 696]
gi|423237049|emb|CCK08740.1| Ribosomal RNA small subunit methyltransferase B [Cronobacter
sakazakii 696]
Length = 437
Score = 214 bits (544), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 116/333 (34%), Positives = 193/333 (57%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ ++ ++ W +P+W +N+++ +P +W+ +++ +++P
Sbjct: 125 LINGVLRQFQRQQDELLAE--FSGQDARWLHPMWLLNRLQTAWPQ--EWQAVVEANNERP 180
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N++ + + KLL+++G+ I P A++L P +S +P F G+ ++QD
Sbjct: 181 PMWLRVNRQHYSRDEWLKLLEENGMTGHIHPRYPDAVRLDAPAPVSALPGFEQGWVTVQD 240
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LL ++ +LD C+APGGKT H+LE A +++VD + R++ + ENLKR
Sbjct: 241 ASAQGCVELLAPQNDETILDLCAAPGGKTTHILEAAPQASVMAVDVDAQRISRVYENLKR 300
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KA + + D RF + + FDRIL D PC+ +GV+RR+
Sbjct: 301 LKMKADVKVGD------------------GRFPSTWCGDTQFDRILLDAPCSATGVIRRH 342
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR +DI +L++ +IL +W LKPGG LL+ TCS+ EE+ EQ F
Sbjct: 343 PDIKWLRRDSDINELAQLQSEILEAIWPHLKPGGTLLYATCSVLPEENSEQIRAFLSRTP 402
Query: 296 DSI-----RLNSPG-QLLPTVNKKQDYDGFFYS 322
D+ +PG Q LP + DGFFY+
Sbjct: 403 DAQLDGTGSTQTPGIQNLPGATEG---DGFFYA 432
>gi|416068281|ref|ZP_11582716.1| LOW QUALITY PROTEIN: methionyl-tRNA formyltransferase
[Aggregatibacter actinomycetemcomitans serotype f str.
D18P1]
gi|348001179|gb|EGY41933.1| LOW QUALITY PROTEIN: methionyl-tRNA formyltransferase
[Aggregatibacter actinomycetemcomitans serotype f str.
D18P1]
Length = 451
Score = 214 bits (544), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 123/343 (35%), Positives = 191/343 (55%), Gaps = 34/343 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
++NA+LR FLR++ M + +W +P W +N++K YPN W+ I++ ++
Sbjct: 127 LVNAVLRRFLREQ-----ESMLAKVDKHWQTLHPDWLVNKLKKVYPN---WREIIEANNQ 178
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLETTIIG-PLAIKLHTPISISKIPKFFNGFCSIQ 117
KPP+ LR+N +K +L +Y LL ++ I P A+ L P S+ +P F G ++Q
Sbjct: 179 KPPMWLRVNTQKNSLETYRTLLTAQQMDAQITSHPQALGLTQPTSVQYLPLFAEGGVTVQ 238
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
D AQ AA LL ++G +LDAC+APGGKT H+LE+A +++++D +RL + ENL
Sbjct: 239 DLHAQWAALLLQPQNGELILDACAAPGGKTTHILELAPQAEVVALDVEENRLQRVKENLA 298
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
R+ +AT++ D + N + + K FDRIL D PC+ +GVVRR+P
Sbjct: 299 RMQQQATIVCGDAA--NPRAWLTKLGKSAVR---------FDRILLDAPCSATGVVRRHP 347
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR++ DI+ L + +IL LW LKP G LL+ TCS+ EE+ Q F + D
Sbjct: 348 DIKWLRKEADIEPLVELQEQILQALWPYLKPSGVLLYATCSVLAEENARQIERFLQRTPD 407
Query: 297 S--IRLNSPGQLLPT---------VNKKQDYDGFFYSLFQKRK 328
+ LN P ++L + + DGF+Y+ KR+
Sbjct: 408 AQLAVLNLPEEVLARNQSAVGFQFIPQTDGGDGFYYAKLVKRE 450
>gi|444334814|ref|ZP_21150261.1| LOW QUALITY PROTEIN: methionyl-tRNA formyltransferase
[Aggregatibacter actinomycetemcomitans serotype a str.
A160]
gi|443549860|gb|ELT58441.1| LOW QUALITY PROTEIN: methionyl-tRNA formyltransferase
[Aggregatibacter actinomycetemcomitans serotype a str.
A160]
Length = 769
Score = 214 bits (544), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 123/343 (35%), Positives = 191/343 (55%), Gaps = 34/343 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
++NA+LR FLR++ M + +W +P W +N++K YPN W+ I++ ++
Sbjct: 445 LVNAVLRRFLREQ-----ESMLAKVDKHWQTLHPDWLVNKLKKVYPN---WREIIEANNQ 496
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLETTIIG-PLAIKLHTPISISKIPKFFNGFCSIQ 117
KPP+ LR+N +K +L +Y LL ++ I P A+ L P S+ +P F G ++Q
Sbjct: 497 KPPMWLRVNTQKNSLETYRTLLTAQQMDAQITSHPQALGLTQPTSVQYLPLFAEGGVTVQ 556
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
D AQ AA LL ++G +LDAC+APGGKT H+LE+A +++++D +RL + ENL
Sbjct: 557 DLHAQWAALLLQPQNGELILDACAAPGGKTTHILELAPQAEVVALDVEENRLQRVKENLA 616
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
R+ +AT++ D + N + + K FDRIL D PC+ +GVVRR+P
Sbjct: 617 RMQQQATIVCGDAA--NPRAWLTKLGKSAVR---------FDRILLDAPCSATGVVRRHP 665
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR++ DI+ L + +IL LW LKP G LL+ TCS+ EE+ Q F + D
Sbjct: 666 DIKWLRKEADIEPLVELQEQILQALWPYLKPSGVLLYATCSVLAEENARQIERFLQRTPD 725
Query: 297 S--IRLNSPGQLLPT---------VNKKQDYDGFFYSLFQKRK 328
+ LN P ++L + + DGF+Y+ KR+
Sbjct: 726 AQLAVLNLPEEVLARNQSAVGFQFIPQTDGGDGFYYAKLVKRE 768
>gi|366161349|ref|ZP_09461211.1| 16S rRNA methyltransferase B [Escherichia sp. TW09308]
gi|432373858|ref|ZP_19616889.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE11]
gi|430893280|gb|ELC15604.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE11]
Length = 429
Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 201/333 (60%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQDELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLET--TIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL+++G+ + A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHSRDSWIALLEEAGMNGFPHAVYLDAVRLETPTPVHALPGFEEGWITVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LD ++G +LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCVTYLDPQNGENILDLCAAPGGKTTHILEVAPEAQVLAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ ++ FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPAQWCGSQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ +Q F + +
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILDAVWPHLKSGGTLVYATCSVLPEENSQQIKAFLQRTE 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D++ + PG Q LP ++ DGFFY+
Sbjct: 395 DAMLCETGTPEQPGKQNLPDA---EEGDGFFYA 424
>gi|421080414|ref|ZP_15541347.1| Ribosomal RNA small subunit methyltransferase B [Pectobacterium
wasabiae CFBP 3304]
gi|401704846|gb|EJS95036.1| Ribosomal RNA small subunit methyltransferase B [Pectobacterium
wasabiae CFBP 3304]
Length = 429
Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 115/333 (34%), Positives = 193/333 (57%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + + N S++ +P W + +++ YPN W++++D +++P
Sbjct: 117 LINGVLRQFQRQQEELIQREATNA--SHYLHPSWLLARIEHAYPN--HWQSVVDANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLA--IKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T +Y LL + G+E A I+L +P ++ +P F G+ +IQD
Sbjct: 173 PMWLRVNRLHHTREAYLDLLAQEGIEAFAHPDYADAIRLASPCAVDLLPGFSQGWATIQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LD + G +LD C+APGGKT H+LE A +++VD + +RL + ENL R
Sbjct: 233 ASAQGCVYWLDPQDGEQILDLCAAPGGKTTHILEAAPKSHVLAVDIDETRLGRVKENLLR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L + A + K+ + R+ + + + FDRIL D PC+ +GV+RR+
Sbjct: 293 LQMNAEV------------------KQGDGRYPNSWCEGRMFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI++L +I++ +W LKPGG +++ TCS+ +E+ +Q F H
Sbjct: 335 PDIKWLRRDRDIEELVALQKEIIDAIWPHLKPGGTMVYATCSILPQENAQQVTDFLSRHA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ +++ PG Q+LP + DGFFY+
Sbjct: 395 DATLVDTGTSEIPGIQMLPHADGG---DGFFYA 424
>gi|188535245|ref|YP_001909042.1| 16S rRNA methyltransferase B [Erwinia tasmaniensis Et1/99]
gi|224493254|sp|B2VK95.1|RSMB_ERWT9 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|188030287|emb|CAO98176.1| rRNA methylase Sun [Erwinia tasmaniensis Et1/99]
Length = 429
Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 117/332 (35%), Positives = 188/332 (56%), Gaps = 34/332 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + N + + +P W + ++K +P QWK I+D +++P
Sbjct: 117 LINGVLRQFQRQQDELMQQ--MNDGDQQYLHPKWLLERLKRAWPA--QWKQIVDANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL---AIKLHTPISISKIPKFFNGFCSIQ 117
P+ LR+N++ + ++ LL++SG + P A++L +P ++ ++P F G+ ++Q
Sbjct: 173 PMWLRVNRQHHSRDAWLTLLEESG-KQAFAHPQHGDALRLESPCAVGQLPGFDQGWITVQ 231
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
D +AQ LL R G +LD C+APGGKT H+LE A K+++VD + RL +SENL+
Sbjct: 232 DVSAQGCVALLAPRDGEQILDLCAAPGGKTTHILEAAPQAKVMAVDVDAQRLARVSENLQ 291
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL ++A + D + + FDRIL D PC+ +GV+RR+P
Sbjct: 292 RLTMQAEVKQGD----------------GRTPAAWCGDTQFDRILLDAPCSATGVIRRHP 335
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLRR DI +L+ +IL+ +W LKPGG LL+ TCS+ EE+ Q F + H D
Sbjct: 336 DIKWLRRDRDIAELAALQQQILDAVWPHLKPGGTLLYATCSVLPEENHVQIGQFLQRHAD 395
Query: 297 SI-----RLNSPG-QLLPTVNKKQDYDGFFYS 322
+ L PG Q+ P + DGF+Y+
Sbjct: 396 ATLIETGDLTQPGIQVFPQADGG---DGFYYA 424
>gi|453066263|gb|EMF07212.1| 16S rRNA methyltransferase B [Serratia marcescens VGH107]
Length = 429
Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 115/328 (35%), Positives = 186/328 (56%), Gaps = 26/328 (7%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + N +S + +P W + +++ YP W+ I+D ++KP
Sbjct: 117 LINGVLRQFQRQQEELLQRASNN--DSRYLHPSWLLKRIQQAYP--ANWEQIVDANNQKP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGL--ETTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T +Y +LL +G+ ET A++L P +++ +P F G+ ++QD
Sbjct: 173 PMWLRVNRLHHTRDAYLQLLNDAGIAAETHADYADAVRLLAPCAVTDLPGFAEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LLD ++G +LD C+APGGKT H+LE A +++VD + RL + ENL+R
Sbjct: 233 ASAQGCVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKAHVMAVDIDEQRLARVKENLQR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L A + L D ++ +K FDRIL D PC+ +GV+RR+PD
Sbjct: 293 LRLHAEVKLGD----------------GRTPQQWCGDKQFDRILLDAPCSATGVIRRHPD 336
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR DI +L+ +IL +W LK GG +++ TCS+ +E+ Q F + H D+
Sbjct: 337 IKWLRRDRDIAELAALQAEILEAVWPHLKSGGVMVYATCSILPDENSNQIAAFLQRHADA 396
Query: 298 IRLNSPGQLLP---TVNKKQDYDGFFYS 322
+ + P + +D DGFFY+
Sbjct: 397 KLVETGDAQRPGRQNIPHPEDGDGFFYA 424
>gi|387121464|ref|YP_006287347.1| LOW QUALITY PROTEIN: methionyl-tRNA formyltransferase
[Aggregatibacter actinomycetemcomitans D7S-1]
gi|385875956|gb|AFI87515.1| LOW QUALITY PROTEIN: methionyl-tRNA formyltransferase
[Aggregatibacter actinomycetemcomitans D7S-1]
Length = 770
Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 123/343 (35%), Positives = 191/343 (55%), Gaps = 34/343 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
++NA+LR FLR++ M + +W +P W +N++K YPN W+ I++ ++
Sbjct: 446 LVNAVLRRFLREQ-----ESMLAKVDKHWQTLHPDWLVNKLKKVYPN---WREIIEANNQ 497
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLETTIIG-PLAIKLHTPISISKIPKFFNGFCSIQ 117
KPP+ LR+N +K +L +Y LL ++ I P A+ L P S+ +P F G ++Q
Sbjct: 498 KPPMWLRVNTQKNSLETYRTLLTAQQMDAQITSHPQALGLTQPTSVQYLPLFAEGGVTVQ 557
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
D AQ AA LL ++G +LDAC+APGGKT H+LE+A +++++D +RL + ENL
Sbjct: 558 DLHAQWAALLLQPQNGELILDACAAPGGKTTHILELAPQAEVVALDVEENRLQRVKENLA 617
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
R+ +AT++ D + N + + K FDRIL D PC+ +GVVRR+P
Sbjct: 618 RMQQQATIVCGDAA--NPRAWLTKLGKSAVR---------FDRILLDAPCSATGVVRRHP 666
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR++ DI+ L + +IL LW LKP G LL+ TCS+ EE+ Q F + D
Sbjct: 667 DIKWLRKEADIEPLVELQEQILQALWPYLKPSGVLLYATCSVLAEENARQIERFLQRTPD 726
Query: 297 S--IRLNSPGQLLPT---------VNKKQDYDGFFYSLFQKRK 328
+ LN P ++L + + DGF+Y+ KR+
Sbjct: 727 AQLAVLNLPEEVLARNQSAVGFQFIPQTDGGDGFYYAKLVKRE 769
>gi|296104996|ref|YP_003615142.1| 16S rRNA methyltransferase B [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|295059455|gb|ADF64193.1| 16S rRNA methyltransferase B [Enterobacter cloacae subsp. cloacae
ATCC 13047]
Length = 438
Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 117/331 (35%), Positives = 192/331 (58%), Gaps = 32/331 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + E+ + +P W +N++K YP +W++I D +++P
Sbjct: 126 LINGVLRQFQRQQEELLAE--FAKSETRFLHPDWLLNRLKKAYPQ--RWQDIADANNQRP 181
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLE--TTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T ++ LL+++G+ P A++L +P+ + +P F G+ ++QD
Sbjct: 182 PMWLRVNRNHHTRDAWLALLEEAGMSGFAHDAYPDAVRLASPVPVHALPGFDEGWVTVQD 241
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L+ ++G +LD C+APGGKT H+LE+A +++VD + RL+ + +NLKR
Sbjct: 242 ASAQGCMTWLEPKNGEQILDLCAAPGGKTTHILEVAPQASVMAVDIDDQRLSRVYDNLKR 301
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L +KA + D K + FDRIL D PC+ +GV+RR+PD
Sbjct: 302 LGMKAQVKQGDGRKPT----------------EWCGETQFDRILLDAPCSATGVIRRHPD 345
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH--- 294
I WLRR DIK+L++ +IL+ +W LKPGG L++ TCS+ EE+ +Q F K
Sbjct: 346 IKWLRRDRDIKELAQLQSEILDAIWPHLKPGGTLVYATCSILPEENSQQISAFLKRTPGA 405
Query: 295 --KDSIRLNSPGQL-LPTVNKKQDYDGFFYS 322
+D+ PGQ LP ++ DGFFY+
Sbjct: 406 TLRDTGTPEHPGQQNLPGA---EEGDGFFYA 433
>gi|170769473|ref|ZP_02903926.1| ribosomal RNA small subunit methyltransferase B [Escherichia
albertii TW07627]
gi|170121530|gb|EDS90461.1| ribosomal RNA small subunit methyltransferase B [Escherichia
albertii TW07627]
Length = 429
Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 113/331 (34%), Positives = 198/331 (59%), Gaps = 32/331 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL+K+G++ + P A++L P + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHNSRDSWLALLEKAGMKGFLHANYPDAVRLEIPAPVHALPGFDEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVMAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L +KAT+ D + ++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 293 LGMKATVKQGD----------------GRSPSQWCGEQQFDRILLDAPCSATGVIRRHPD 336
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ +Q F + +D+
Sbjct: 337 IKWLRRDRDIAELAQLQSEILDAIWPHLKSGGTLVYATCSILPEENSQQIKAFLQRTEDA 396
Query: 298 IRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
+ + PG Q LP ++ DGFFY+
Sbjct: 397 MLCETGTPEQPGKQNLPDA---EEGDGFFYA 424
>gi|146291133|ref|YP_001181557.1| sun protein [Shewanella putrefaciens CN-32]
gi|145562823|gb|ABP73758.1| sun protein [Shewanella putrefaciens CN-32]
Length = 429
Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 116/302 (38%), Positives = 176/302 (58%), Gaps = 26/302 (8%)
Query: 29 WNYPIWWINQVKITYPNFFQWKNILDVGHKKPPLTLRINQRKTTLISYNKLLKKSGLETT 88
+N P W I ++K YP QW++I+ H++PP+ LR N+ + Y L + +E +
Sbjct: 138 YNTPAWLIKRLKEAYPE--QWQDIIQQSHERPPMWLRNNRLSQSRTEYLAALAELDIEAS 195
Query: 89 IIGPL-AIKLHTPISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKT 147
AI L P ++ +P+F G S+QD AAQ AA LL ++ +LDAC+APGGK+
Sbjct: 196 EGSSADAILLAHPKDVATLPRFHEGAASVQDGAAQWAATLLAPQANELILDACAAPGGKS 255
Query: 148 CHLLEIA-DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTN 206
CHLLE+ +IKL++VD + RL + +NL RL+LKA LI D + I
Sbjct: 256 CHLLEVEPNIKLVAVDFDAKRLERVQQNLDRLSLKAELIHGDAANIG------------- 302
Query: 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLK 266
+++ FDRIL D PC+ +GV+RR+PDI WLR+ +DI++L++ +IL++ WK LK
Sbjct: 303 ---SWWQGGLFDRILLDAPCSATGVIRRHPDIKWLRKNHDIEELAELQQQILDHCWKWLK 359
Query: 267 PGGKLLFVTCSLWFEESEEQAIIFSKNHKDS-----IRLNSPGQLLPTVNKKQD-YDGFF 320
PGG LL+ TCS+ +E+ +Q F D+ + NSP + + QD DGF+
Sbjct: 360 PGGTLLYATCSILPQENRDQISAFLDRTVDAKLDILAQQNSPQDIGWQITPGQDNMDGFY 419
Query: 321 YS 322
Y+
Sbjct: 420 YA 421
>gi|444348295|ref|ZP_21155991.1| LOW QUALITY PROTEIN: methionyl-tRNA formyltransferase
[Aggregatibacter actinomycetemcomitans serotype b str.
S23A]
gi|443547349|gb|ELT56863.1| LOW QUALITY PROTEIN: methionyl-tRNA formyltransferase
[Aggregatibacter actinomycetemcomitans serotype b str.
S23A]
Length = 770
Score = 213 bits (543), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 122/343 (35%), Positives = 192/343 (55%), Gaps = 34/343 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
++NA+LR FLR++ M + +W +P W +N++K YPN W+ I++ ++
Sbjct: 446 LVNAVLRRFLREQ-----ESMLAKVDKHWQTLHPDWLVNKLKKVYPN---WREIIEANNQ 497
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLETTIIG-PLAIKLHTPISISKIPKFFNGFCSIQ 117
KPP+ LR+N +K +L +Y LL ++ I P A+ L P S+ +P F G ++Q
Sbjct: 498 KPPMWLRVNTQKNSLETYCTLLTAQQMDAQITSHPQALGLTQPTSVQYLPLFAEGGVTVQ 557
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
D AQ AA LL ++G +LDAC+APGGKT H+LE+A +++++D +RL + ENL
Sbjct: 558 DLHAQWAALLLQPQNGELILDACAAPGGKTTHILELAPQAEVVALDVEENRLQRVKENLA 617
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
R+ +AT++ D + N + + K FDRIL D PC+ +GV+RR+P
Sbjct: 618 RMQQQATIVCGDAA--NPRAWLTKLGKSAVR---------FDRILLDAPCSATGVIRRHP 666
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR++ DI+ L + +IL LW LKP G LL+ TCS+ EE+ Q F ++ D
Sbjct: 667 DIKWLRKEADIEPLVELQEQILQALWPYLKPSGVLLYATCSVLAEENARQIERFLQHTPD 726
Query: 297 S--IRLNSPGQLLPT---------VNKKQDYDGFFYSLFQKRK 328
+ LN P ++L + + DGF+Y+ KR+
Sbjct: 727 AQPTALNLPEEVLARNQSAVGFQFIPQTDGGDGFYYAKLVKRE 769
>gi|227115242|ref|ZP_03828898.1| 16S rRNA methyltransferase B [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 429
Score = 213 bits (543), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 192/333 (57%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + + H S++ +P W + +++ YP+ W+NI++ +++P
Sbjct: 117 LINGVLRQFQRQQEELIQREA--THSSHYLHPSWLLTRIERAYPH--HWQNIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T +Y LL + G+E AI+L P ++ ++P F G+ ++QD
Sbjct: 173 PMWLRVNRLHHTREAYLNLLDQEGIEAFPHAEYNDAIRLAAPCAVDQLPGFSQGWATVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LD + G +LD C+APGGKT H+LE A +++VD + +RL + ENL R
Sbjct: 233 ASAQGCVYWLDPQDGEQILDLCAAPGGKTTHILEAAPKSHVLAVDVDETRLGRVKENLLR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L + A + K+ + R+ + + + FDR+L D PC+ +GV+RR+
Sbjct: 293 LQMHAEV------------------KQGDGRYPDSWCEGRVFDRVLLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI++L +IL+ +W LK GG L++ TCS+ +E+ +Q F H
Sbjct: 335 PDIKWLRRDRDIEELVALQKEILDAIWPHLKTGGTLVYATCSILPQENTQQVADFLTRHT 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ +++ PG Q+LP + DGFFY+
Sbjct: 395 DATLVDTGTREMPGIQMLPHADGG---DGFFYA 424
>gi|365966642|ref|YP_004948204.1| LOW QUALITY PROTEIN: methionyl-tRNA formyltransferase
[Aggregatibacter actinomycetemcomitans ANH9381]
gi|365745555|gb|AEW76460.1| LOW QUALITY PROTEIN: methionyl-tRNA formyltransferase
[Aggregatibacter actinomycetemcomitans ANH9381]
Length = 769
Score = 213 bits (543), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 122/343 (35%), Positives = 192/343 (55%), Gaps = 34/343 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
++NA+LR FLR++ M + +W +P W +N++K YPN W+ I++ ++
Sbjct: 445 LVNAVLRRFLREQ-----ESMLAKVDKHWQTLHPDWLVNKLKKVYPN---WREIIEANNQ 496
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLETTIIG-PLAIKLHTPISISKIPKFFNGFCSIQ 117
KPP+ LR+N +K +L +Y LL ++ I P A+ L P S+ +P F G ++Q
Sbjct: 497 KPPMWLRVNTQKNSLETYCTLLTAQQMDAQITSHPQALGLTQPTSVQYLPLFAEGGVTVQ 556
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
D AQ AA LL ++G +LDAC+APGGKT H+LE+A +++++D +RL + ENL
Sbjct: 557 DLHAQWAALLLQPQNGELILDACAAPGGKTTHILELAPQAEVVALDVEENRLQRVKENLA 616
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
R+ +AT++ D + N + + K FDRIL D PC+ +GV+RR+P
Sbjct: 617 RMQQQATIVCGDAA--NPRAWLTKLGKSAVR---------FDRILLDAPCSATGVIRRHP 665
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR++ DI+ L + +IL LW LKP G LL+ TCS+ EE+ Q F ++ D
Sbjct: 666 DIKWLRKEADIEPLVELQEQILQALWPYLKPSGVLLYATCSVLAEENARQIERFLQHTPD 725
Query: 297 S--IRLNSPGQLLPT---------VNKKQDYDGFFYSLFQKRK 328
+ LN P ++L + + DGF+Y+ KR+
Sbjct: 726 AQPTALNLPEEVLARNQSAVGFQFIPQTDGGDGFYYAKLVKRE 768
>gi|270157755|ref|ZP_06186412.1| ribosomal RNA small subunit methyltransferase B [Legionella
longbeachae D-4968]
gi|289163976|ref|YP_003454114.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Legionella
longbeachae NSW150]
gi|269989780|gb|EEZ96034.1| ribosomal RNA small subunit methyltransferase B [Legionella
longbeachae D-4968]
gi|288857149|emb|CBJ10965.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Legionella
longbeachae NSW150]
Length = 458
Score = 213 bits (543), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 127/343 (37%), Positives = 192/343 (55%), Gaps = 37/343 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR F R+ EI +++ + +P W + +++ +PN W+ I P
Sbjct: 138 LVNAVLRNFCRQHDEIL-TRLNKDPLFLYGHPQWLLRRLQKDWPN--NWQAITKANEAHP 194
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+TLR+N RK +++ Y +LK++ + T I AI L TP + ++P F G S+QD
Sbjct: 195 PMTLRVNLRKISVMEYLNVLKQANITATPHSIAAEAIVLETPCDVHQLPGFAQGLVSVQD 254
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQLA LL ++ G+ VLDAC APGGKTCH+LE + ++VD + RL+ + ENL
Sbjct: 255 GAAQLATSLLSLKPGLRVLDACCAPGGKTCHILEKEPHLAECVAVDIDSKRLDRVRENLN 314
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL+L ATL+ D S N +++ K FDRIL D PC+ +GV+RR+
Sbjct: 315 RLHLHATLLQGDAS----------------NPSQWWDGKLFDRILLDAPCSATGVIRRHS 358
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI LR +I ++K +L++LW +L GG L++ TCS+ E+E+Q F KN+ D
Sbjct: 359 DIKLLRNDEEIATITKIQHTMLSSLWPLLTKGGLLVYATCSVMLAENEQQIANFIKNNPD 418
Query: 297 S--IRLNSP--------GQLLPTVNKKQDYDGFFYS-LFQKRK 328
I + P Q+LP +Q DGFFY+ LF+ K
Sbjct: 419 CNLITKSWPWGHTTKYGQQILP---GEQCMDGFFYAVLFKDEK 458
>gi|152998580|ref|YP_001364261.1| sun protein [Shewanella baltica OS185]
gi|151363198|gb|ABS06198.1| sun protein [Shewanella baltica OS185]
Length = 428
Score = 213 bits (543), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 116/302 (38%), Positives = 176/302 (58%), Gaps = 26/302 (8%)
Query: 29 WNYPIWWINQVKITYPNFFQWKNILDVGHKKPPLTLRINQRKTTLISYNKLLKKSGLETT 88
+N P W I ++K YP QW++I+ H++PP+ LR N+ + Y L + +E +
Sbjct: 138 YNTPAWLIKRLKEAYPE--QWQDIIQQSHERPPMWLRNNRLSQSRAEYLAALAELEIEAS 195
Query: 89 IIGPL-AIKLHTPISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKT 147
AI L P ++ +P+F G S+QD AAQ AA LL ++ +LDAC+APGGK+
Sbjct: 196 EGSSADAILLAHPKDVATLPRFHEGAASVQDGAAQWAATLLAPQANELILDACAAPGGKS 255
Query: 148 CHLLEIA-DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTN 206
CHLLE+ IKL++VD + RL + +NL RL+LKA LI D + I+
Sbjct: 256 CHLLELEPSIKLVAVDFDAKRLERVQQNLDRLSLKAELIHGDAANID------------- 302
Query: 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLK 266
+++ FDRIL D PC+ +GV+RR+PDI WLR+ +DI++L++ +IL + WK LK
Sbjct: 303 ---SWWQGGQFDRILLDAPCSATGVIRRHPDIKWLRKNHDIEELAELQQQILEHCWKWLK 359
Query: 267 PGGKLLFVTCSLWFEESEEQAIIFSKNHKDS-----IRLNSPGQLLPTVNKKQD-YDGFF 320
PGG LL+ TCS+ +E+ +Q F + D+ + NSP + + QD DGF+
Sbjct: 360 PGGTLLYATCSILPQENRDQISAFLERTADAKLETLSQQNSPQDIGWQITPGQDNMDGFY 419
Query: 321 YS 322
Y+
Sbjct: 420 YA 421
>gi|387126151|ref|YP_006294756.1| ribosomal RNA small subunit methyltransferase B [Methylophaga sp.
JAM1]
gi|386273213|gb|AFI83111.1| Ribosomal RNA small subunit methyltransferase B [Methylophaga sp.
JAM1]
Length = 435
Score = 213 bits (543), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 124/340 (36%), Positives = 190/340 (55%), Gaps = 35/340 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA LR + R++ E + + + + +P W I + + +P W+NIL +++P
Sbjct: 118 LINACLRNYQRQQ-ETLEKNLTEQTVTEYAHPAWLIEKYQADWPAL--WQNILTANNQQP 174
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N R+ + Y +LL+K+ + T I P I L + +P F G S+QD
Sbjct: 175 PMMLRVNSREYSQSEYLELLEKAAISATAIENCPQGILLEQACDVFALPGFVEGAISVQD 234
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAQ LLD++ +LDACSAPGGKTCH+LE + +LI++D + RL + ENL R
Sbjct: 235 GAAQQVVDLLDLQPNQRILDACSAPGGKTCHILERVPTNELIALDISQERLKQVEENLSR 294
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
LNL A + +D S N ++ + FDRIL D PCTGSGV+RR+PD
Sbjct: 295 LNLSANCLAADAS----------------NPQNWWNGEQFDRILIDAPCTGSGVIRRHPD 338
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH--- 294
I LR+ +DI +L++ +L+NLW +LKP G +++ TCS + +E+E Q F +
Sbjct: 339 IKLLRKPHDIDQLAQQQQALLDNLWPLLKPDGLMVYTTCSAFKQENELQIEAFLQRQPEA 398
Query: 295 KDSIRLNSPG-------QLLPTVNKKQDYDGFFYSLFQKR 327
K+ + + +P QLLP N D DGF+Y+ + R
Sbjct: 399 KEHVPVRAPARRVSFGYQLLPGDN---DLDGFYYACLRHR 435
>gi|334125893|ref|ZP_08499877.1| RNA methyltransferase Sun [Enterobacter hormaechei ATCC 49162]
gi|333386293|gb|EGK57510.1| RNA methyltransferase Sun [Enterobacter hormaechei ATCC 49162]
Length = 428
Score = 213 bits (543), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 115/330 (34%), Positives = 190/330 (57%), Gaps = 30/330 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + E+ + +P W +N++K YP QWK+I D +++P
Sbjct: 116 LINGVLRQFQRQQDELLAE--FAQSEARFLHPEWLLNRLKKAYPQ--QWKDIADANNQRP 171
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLE--TTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ +R+N+ T ++ LL+++G+ T P A++L + + +P F G+ ++QD
Sbjct: 172 PMWVRVNRNHHTRDAWLALLEEAGMGGFTHAAYPDAVRLASAAPVHALPGFEEGWVTVQD 231
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKR 177
A+AQ L+ + G +LD C+APGGKT H+LE+A +++VD + RL+ + +NLKR
Sbjct: 232 ASAQGCMTWLEPKDGEQILDLCAAPGGKTTHILEVAPRANVMAVDVDEQRLSRVYDNLKR 291
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L +KA + D + + FDRIL D PC+ +GV+RR+PD
Sbjct: 292 LGMKAQVKQGD----------------GRTPADWCGDTRFDRILLDAPCSATGVIRRHPD 335
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR DIK+L++ +IL+ +W LKPGG L++ TCS+ EE+ +Q F K D+
Sbjct: 336 IKWLRRDRDIKELAQLQSEILDAIWPHLKPGGTLVYATCSVLPEENSQQIAAFLKRTPDA 395
Query: 298 IRLNS-----PGQLLPTVNKKQDYDGFFYS 322
++ PG L + ++ DGFFY+
Sbjct: 396 TLHDTGTPEHPG--LQNLPGAEEGDGFFYA 423
>gi|238763703|ref|ZP_04624662.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
kristensenii ATCC 33638]
gi|238698005|gb|EEP90763.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
kristensenii ATCC 33638]
Length = 429
Score = 213 bits (543), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 117/336 (34%), Positives = 200/336 (59%), Gaps = 32/336 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + N +S++ +P W + ++K YP+ QW+ I+D ++KP
Sbjct: 117 LINGVLRQFQRQQVELLERAANN--DSHYLHPSWLLARIKQAYPD--QWQQIVDANNQKP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+++ + Y +LLK++ ++ P A++L TP ++S +P F G+ ++QD
Sbjct: 173 PMWLRVSRLHNSRSKYLELLKQANIDALPHDFYPDAVRLITPCAVSTLPGFELGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LLD ++G +LD C+APGGKT H+LE A ++++D + RL+ + ENL+R
Sbjct: 233 ASAQGCVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKAHVLAIDIDEQRLSRVKENLQR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L A + + D + + ++ FDRIL D PC+ +GV+RR+PD
Sbjct: 293 LKLHADVRVGDGRIPD----------------EWCGDQQFDRILLDAPCSATGVIRRHPD 336
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI L++ +I+ +W LK GG +++ TCS+ EE+++Q F + H ++
Sbjct: 337 IKWLRRDSDIADLAQLQSEIIEAIWPKLKKGGVMVYATCSILPEENQQQIATFLQRHSEA 396
Query: 298 IRL-----NSPG-QLLPTVNKKQDYDGFFYSLFQKR 327
+ ++PG Q LP +D DGF+Y+ KR
Sbjct: 397 ELVETGTTSAPGRQNLP---HPEDGDGFYYAKLIKR 429
>gi|395004334|ref|ZP_10388399.1| ribosomal RNA small subunit methyltransferase RsmB [Acidovorax sp.
CF316]
gi|394317745|gb|EJE54243.1| ribosomal RNA small subunit methyltransferase RsmB [Acidovorax sp.
CF316]
Length = 477
Score = 213 bits (543), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 124/345 (35%), Positives = 190/345 (55%), Gaps = 32/345 (9%)
Query: 2 INAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
INA LR FLR+ + + + + WN+P+WWI +++ +P QW+ IL + P
Sbjct: 148 INACLRRFLRESDALVAATEADP-VARWNHPLWWIKRLQKDHPE--QWEQILHANNTHAP 204
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAA 121
+ LR+N+ + + Y + L G G + LH P+ + +P F G S+QD AA
Sbjct: 205 MALRVNRLQGSQAQYQQELADMGAAADPAGADGLVLHRPLPVQALPGFAQGRVSVQDMAA 264
Query: 122 QLAAPLL----DIRSGMYVLDACSAPGGKTCHLLEIAD----IKLISVDNNLSRLNMISE 173
Q AAPLL D + VLDAC+APGGKT HLLE+A +++ +++ + +R I +
Sbjct: 265 QQAAPLLLQGMDRTRSLRVLDACAAPGGKTAHLLEMAGEGAPLQVTALEIDATRAERIHQ 324
Query: 174 NLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVR 233
L RL L A ++++D ++ + + + FD IL D PCT SG+VR
Sbjct: 325 TLSRLGLAAQVLVADAAQP--EAWWPQAS----------GGALFDAILLDAPCTASGIVR 372
Query: 234 RNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKN 293
R+PD+ WLRR+ DI +L+ ++L LW +L PGG+LL+ TCS++ E + Q F +
Sbjct: 373 RHPDVRWLRRETDIAQLATLQKQLLAALWPLLAPGGRLLYCTCSVFRAEGDAQVQTFLAH 432
Query: 294 HKDSIRLNSPGQLLPTVNKKQ---------DYDGFFYSLFQKRKE 329
+ D+ L SPG L+P KQ D+DGFFY+L QK +
Sbjct: 433 NTDAHLLPSPGHLIPRAADKQGAVPDNRFGDHDGFFYALLQKSAD 477
>gi|375257649|ref|YP_005016819.1| 16S rRNA methyltransferase B [Klebsiella oxytoca KCTC 1686]
gi|365907127|gb|AEX02580.1| 16S rRNA methyltransferase B [Klebsiella oxytoca KCTC 1686]
Length = 429
Score = 213 bits (543), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 112/330 (33%), Positives = 196/330 (59%), Gaps = 30/330 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ ++ E + +P W + +++ YP QW+ I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLSE--FSRSEIRFLHPSWLLKRLQKAYPA--QWEAIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLE--TTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ S+ LL+++G++ T P A+++ TP+ + +P F G+ ++QD
Sbjct: 173 PMWLRVNRVHHPRDSWLALLEEAGMKGFTHPAYPDAVRMETPVPVHALPGFEEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LD ++G +LD C+APGGKT H+LE A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCITFLDPKNGEQILDLCAAPGGKTTHILEAAPEAQVLAVDVDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ +Q F +
Sbjct: 335 PDIKWLRRDRDIAELAQLQSEILDAVWPHLKTGGTLVYATCSVLPEENSQQIKAFLQRTA 394
Query: 296 DSIRLNSPGQLLP---TVNKKQDYDGFFYS 322
D++ + LP + ++ DGFFY+
Sbjct: 395 DAVLSETGSADLPGQQNLPGAEEGDGFFYA 424
>gi|62181914|ref|YP_218331.1| 16S rRNA methyltransferase GidB [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|168264711|ref|ZP_02686684.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|224585203|ref|YP_002639002.1| 16S rRNA methyltransferase GidB [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|375116254|ref|ZP_09761424.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SCSA50]
gi|75480382|sp|Q57J62.1|RSMB_SALCH RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|254766862|sp|C0PZV1.1|RSMB_SALPC RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|62129547|gb|AAX67250.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|205346881|gb|EDZ33512.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|224469731|gb|ACN47561.1| sun protein [Salmonella enterica subsp. enterica serovar Paratyphi
C strain RKS4594]
gi|322716400|gb|EFZ07971.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SCSA50]
Length = 429
Score = 213 bits (543), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 113/332 (34%), Positives = 194/332 (58%), Gaps = 34/332 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + ++ + +P W + +++ YP QW+ I+D +++P
Sbjct: 117 LINGVLRQFQRQQETLLNE--FATSDARFLHPGWLVKRLQNAYPT--QWQRIIDANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T + LL+ +G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ A L ++G ++LD C+APGGKT H+LE+A + +++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVLAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LKPGG L++ TCS+ EE+ +Q F +
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKTFLQRTP 394
Query: 296 DSI-----RLNSPGQLLPTVNKKQDYDGFFYS 322
D+ + PGQ + ++ DGFFY+
Sbjct: 395 DAALSETGTPDQPGQQ--NLPGGEEGDGFFYA 424
>gi|165936548|ref|ZP_02225116.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Orientalis str. IP275]
gi|166213307|ref|ZP_02239342.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Antiqua str. B42003004]
gi|167399475|ref|ZP_02304999.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Antiqua str. UG05-0454]
gi|167419402|ref|ZP_02311155.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Orientalis str. MG05-1020]
gi|167425618|ref|ZP_02317371.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Mediaevalis str. K1973002]
gi|270488262|ref|ZP_06205336.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
KIM D27]
gi|294502314|ref|YP_003566376.1| hypothetical protein YPZ3_0204 [Yersinia pestis Z176003]
gi|384120798|ref|YP_005503418.1| hypothetical protein YPD4_0206 [Yersinia pestis D106004]
gi|384124680|ref|YP_005507294.1| hypothetical protein YPD8_0211 [Yersinia pestis D182038]
gi|165915664|gb|EDR34273.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Orientalis str. IP275]
gi|166205605|gb|EDR50085.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Antiqua str. B42003004]
gi|166963396|gb|EDR59417.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Orientalis str. MG05-1020]
gi|167051979|gb|EDR63387.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Antiqua str. UG05-0454]
gi|167055308|gb|EDR65102.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Mediaevalis str. K1973002]
gi|262360394|gb|ACY57115.1| hypothetical protein YPD4_0206 [Yersinia pestis D106004]
gi|262364344|gb|ACY60901.1| hypothetical protein YPD8_0211 [Yersinia pestis D182038]
gi|270336766|gb|EFA47543.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
KIM D27]
gi|294352773|gb|ADE63114.1| hypothetical protein YPZ3_0204 [Yersinia pestis Z176003]
Length = 431
Score = 213 bits (542), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 118/331 (35%), Positives = 196/331 (59%), Gaps = 32/331 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + + N +S++ +P W + ++K YP QW+ ILD +++P
Sbjct: 119 LINGVLRQFQRQQVELLERAVNN--DSHYLHPSWLLARIKQAYPA--QWQQILDANNQRP 174
Query: 61 PLTLRINQRKTTLISYNKLLKKSGL--ETTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + Y +LL ++ + E I A++L TP +++ +P F G+ ++QD
Sbjct: 175 PMWLRVNRLHHSRSEYLELLTQADINAEPHPIYRDAVRLITPCAVNHLPGFELGWVTVQD 234
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LLD ++G +LD C+APGGKT H+LE A +++VD + RL+ + ENL+R
Sbjct: 235 ASAQGCVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLSRVKENLQR 294
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L+A + + D + + ++ FDRIL D PC+ +GV+RR+PD
Sbjct: 295 LQLQAVVRVGDGRAPDT----------------WCGDQQFDRILLDAPCSATGVIRRHPD 338
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR DI +L++ +I+ +W LK GG L++ TCS+ EE+++Q F + H ++
Sbjct: 339 IKWLRRDRDISELAQLQSEIIEAIWPKLKHGGVLVYATCSILPEENQQQIAAFLQRHPEA 398
Query: 298 I-----RLNSPG-QLLPTVNKKQDYDGFFYS 322
+PG Q LP +D DGFFY+
Sbjct: 399 QLTETGTTAAPGKQNLP---HPEDGDGFFYA 426
>gi|54310619|ref|YP_131639.1| Sun protein [Photobacterium profundum SS9]
gi|46915062|emb|CAG21837.1| Putative Sun protein [Photobacterium profundum SS9]
Length = 431
Score = 213 bits (542), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 119/340 (35%), Positives = 188/340 (55%), Gaps = 36/340 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INAILR + R++ E ++ + + +P W + +K +YP Q + I+ + K
Sbjct: 113 LINAILRNYQRQQ-EQLDAQSVSHDAGKYGHPSWLLKMLKASYPE--QLEAIVTANNTKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTII--GPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N++ T Y LL G+ET + A++L +P +SK+P F +G+ S+QD
Sbjct: 170 PMWLRVNRQHHTRDEYRALLNDVGIETDLHPEAADALRLLSPCDVSKLPGFADGWSSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAQLA L ++G +LD C+APGGKT H++E K++++D + RL + ENL R
Sbjct: 230 GAAQLAVDFLQPQAGELILDCCAAPGGKTAHIMERQPTAKVVAIDCDERRLTRVYENLAR 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L AT++ +D ++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 290 LKLDATVLCAD----------------ARYPADWWHGEKFDRILLDAPCSATGVIRRHPD 333
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI+ L+ +I + +W LK GG L++ TCS+ +E+ EQ F D+
Sbjct: 334 IKWLRRASDIEALAILQAEIFDAMWLQLKSGGTLVYATCSITPQENSEQVKAFLARTADA 393
Query: 298 IRLN----------SPG-QLLPTVNKKQDYDGFFYSLFQK 326
+N PG Q+LP + D DGF+Y++ QK
Sbjct: 394 TLINRGQEADSDMEHPGRQILP---GESDMDGFYYAVLQK 430
>gi|22127891|ref|NP_671314.1| 16S rRNA methyltransferase GidB [Yersinia pestis KIM10+]
gi|51597957|ref|YP_072148.1| 16S rRNA methyltransferase GidB [Yersinia pseudotuberculosis IP
32953]
gi|108809224|ref|YP_653140.1| 16S rRNA methyltransferase B [Yersinia pestis Antiqua]
gi|108813989|ref|YP_649756.1| 16S rRNA methyltransferase B [Yersinia pestis Nepal516]
gi|145597481|ref|YP_001161556.1| 16S rRNA methyltransferase B [Yersinia pestis Pestoides F]
gi|150260712|ref|ZP_01917440.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis CA88-4125]
gi|153947745|ref|YP_001402832.1| 16S rRNA methyltransferase B [Yersinia pseudotuberculosis IP 31758]
gi|161511468|ref|NP_991637.2| 16S rRNA methyltransferase GidB [Yersinia pestis biovar Microtus
str. 91001]
gi|165927896|ref|ZP_02223728.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Orientalis str. F1991016]
gi|166010534|ref|ZP_02231432.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Antiqua str. E1979001]
gi|167468244|ref|ZP_02332948.1| 16S rRNA methyltransferase B [Yersinia pestis FV-1]
gi|170022575|ref|YP_001719080.1| 16S rRNA methyltransferase B [Yersinia pseudotuberculosis YPIII]
gi|186897153|ref|YP_001874265.1| 16S rRNA methyltransferase B [Yersinia pseudotuberculosis PB1/+]
gi|218927446|ref|YP_002345321.1| 16S rRNA methyltransferase GidB [Yersinia pestis CO92]
gi|229836278|ref|ZP_04456445.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis Pestoides A]
gi|229840098|ref|ZP_04460257.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229842180|ref|ZP_04462335.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis biovar
Orientalis str. India 195]
gi|229904520|ref|ZP_04519631.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis Nepal516]
gi|384137783|ref|YP_005520485.1| 16S rRNA methyltransferase B [Yersinia pestis A1122]
gi|384412869|ref|YP_005622231.1| 16S rRNA methyltransferase B [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|420544668|ref|ZP_15042874.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-01]
gi|420549966|ref|ZP_15047612.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-02]
gi|420555423|ref|ZP_15052467.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-03]
gi|420561069|ref|ZP_15057380.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-04]
gi|420566104|ref|ZP_15061921.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-05]
gi|420571725|ref|ZP_15067026.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-06]
gi|420577062|ref|ZP_15071849.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-07]
gi|420582425|ref|ZP_15076736.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-08]
gi|420587556|ref|ZP_15081374.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-09]
gi|420592870|ref|ZP_15086154.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-10]
gi|420598558|ref|ZP_15091254.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-11]
gi|420604095|ref|ZP_15096181.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-12]
gi|420609431|ref|ZP_15101031.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-13]
gi|420614675|ref|ZP_15105710.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-14]
gi|420620109|ref|ZP_15110441.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-15]
gi|420625176|ref|ZP_15115030.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-16]
gi|420630337|ref|ZP_15119720.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-19]
gi|420635467|ref|ZP_15124306.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-25]
gi|420641087|ref|ZP_15129371.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-29]
gi|420646224|ref|ZP_15134086.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-32]
gi|420651870|ref|ZP_15139142.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-34]
gi|420657290|ref|ZP_15144036.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-36]
gi|420662645|ref|ZP_15148813.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-42]
gi|420667636|ref|ZP_15153323.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-45]
gi|420672962|ref|ZP_15158167.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-46]
gi|420678457|ref|ZP_15163170.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-47]
gi|420683687|ref|ZP_15167872.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-48]
gi|420688852|ref|ZP_15172463.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-52]
gi|420694629|ref|ZP_15177518.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-53]
gi|420699899|ref|ZP_15182139.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-54]
gi|420706071|ref|ZP_15187007.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-55]
gi|420711362|ref|ZP_15191815.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-56]
gi|420716724|ref|ZP_15196573.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-58]
gi|420722375|ref|ZP_15201380.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-59]
gi|420728003|ref|ZP_15206376.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-60]
gi|420733127|ref|ZP_15210991.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-61]
gi|420738589|ref|ZP_15215927.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-63]
gi|420743830|ref|ZP_15220623.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-64]
gi|420749713|ref|ZP_15225556.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-65]
gi|420754755|ref|ZP_15230087.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-66]
gi|420760885|ref|ZP_15234944.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-71]
gi|420766044|ref|ZP_15239617.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-72]
gi|420771080|ref|ZP_15244122.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-76]
gi|420776425|ref|ZP_15248948.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-88]
gi|420781883|ref|ZP_15253739.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-89]
gi|420787340|ref|ZP_15258516.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-90]
gi|420792784|ref|ZP_15263423.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-91]
gi|420797914|ref|ZP_15268028.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-92]
gi|420803308|ref|ZP_15272884.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-93]
gi|420808486|ref|ZP_15277574.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-94]
gi|420814279|ref|ZP_15282752.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-95]
gi|420819406|ref|ZP_15287411.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-96]
gi|420824501|ref|ZP_15291961.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-98]
gi|420830323|ref|ZP_15297222.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-99]
gi|420835134|ref|ZP_15301557.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-100]
gi|420840260|ref|ZP_15306201.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-101]
gi|420845873|ref|ZP_15311283.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-102]
gi|420851196|ref|ZP_15316045.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-103]
gi|420856800|ref|ZP_15320755.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-113]
gi|421761664|ref|ZP_16198464.1| 16S rRNA methyltransferase B [Yersinia pestis INS]
gi|46396984|sp|Q8ZJ81.1|RSMB_YERPE RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|81638254|sp|Q664V2.1|RSMB_YERPS RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|122979388|sp|Q1C2X7.1|RSMB_YERPA RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|122979880|sp|Q1CCX4.1|RSMB_YERPN RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|224493292|sp|A7FNK4.1|RSMB_YERP3 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|224493293|sp|B2K506.1|RSMB_YERPB RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|224493294|sp|A4TH21.1|RSMB_YERPP RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|224493295|sp|B1JJH6.1|RSMB_YERPY RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|21961028|gb|AAM87565.1|AE014004_3 hypothetical protein y4021 [Yersinia pestis KIM10+]
gi|51591239|emb|CAH22905.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
32953]
gi|108777637|gb|ABG20156.1| hypothetical protein YPN_3829 [Yersinia pestis Nepal516]
gi|108781137|gb|ABG15195.1| hypothetical protein YPA_3233 [Yersinia pestis Antiqua]
gi|115346057|emb|CAL18923.1| conserved hypothetical protein [Yersinia pestis CO92]
gi|145209177|gb|ABP38584.1| hypothetical protein YPDSF_0162 [Yersinia pestis Pestoides F]
gi|149290120|gb|EDM40197.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis CA88-4125]
gi|152959240|gb|ABS46701.1| ribosomal RNA small subunit methyltransferase B [Yersinia
pseudotuberculosis IP 31758]
gi|165920172|gb|EDR37473.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Orientalis str. F1991016]
gi|165990624|gb|EDR42925.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Antiqua str. E1979001]
gi|169749109|gb|ACA66627.1| sun protein [Yersinia pseudotuberculosis YPIII]
gi|186700179|gb|ACC90808.1| sun protein [Yersinia pseudotuberculosis PB1/+]
gi|229678638|gb|EEO74743.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis Nepal516]
gi|229690490|gb|EEO82544.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis biovar
Orientalis str. India 195]
gi|229696464|gb|EEO86511.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229706346|gb|EEO92353.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis Pestoides A]
gi|320013373|gb|ADV96944.1| 16S rRNA methyltransferase B [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|342852912|gb|AEL71465.1| 16S rRNA methyltransferase B [Yersinia pestis A1122]
gi|391433129|gb|EIQ94498.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-01]
gi|391434056|gb|EIQ95300.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-02]
gi|391436791|gb|EIQ97716.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-03]
gi|391449124|gb|EIR08873.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-04]
gi|391449705|gb|EIR09403.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-05]
gi|391451930|gb|EIR11386.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-06]
gi|391465073|gb|EIR23296.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-07]
gi|391466641|gb|EIR24697.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-08]
gi|391468789|gb|EIR26631.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-09]
gi|391482538|gb|EIR38980.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-10]
gi|391483086|gb|EIR39481.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-12]
gi|391483447|gb|EIR39806.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-11]
gi|391497329|gb|EIR52199.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-13]
gi|391498333|gb|EIR53114.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-15]
gi|391501871|gb|EIR56231.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-14]
gi|391512937|gb|EIR66209.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-16]
gi|391514595|gb|EIR67687.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-19]
gi|391516192|gb|EIR69109.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-25]
gi|391528546|gb|EIR80351.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-29]
gi|391531485|gb|EIR82977.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-34]
gi|391532642|gb|EIR84003.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-32]
gi|391545647|gb|EIR95713.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-36]
gi|391547340|gb|EIR97244.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-42]
gi|391548058|gb|EIR97894.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-45]
gi|391561705|gb|EIS10211.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-46]
gi|391562825|gb|EIS11203.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-47]
gi|391564902|gb|EIS13062.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-48]
gi|391577032|gb|EIS23505.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-52]
gi|391577905|gb|EIS24246.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-53]
gi|391589064|gb|EIS34005.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-55]
gi|391592618|gb|EIS37014.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-54]
gi|391593183|gb|EIS37515.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-56]
gi|391606017|gb|EIS48799.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-60]
gi|391608007|gb|EIS50545.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-58]
gi|391608700|gb|EIS51165.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-59]
gi|391620658|gb|EIS61791.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-61]
gi|391621568|gb|EIS62596.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-63]
gi|391629940|gb|EIS69782.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-64]
gi|391632105|gb|EIS71670.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-65]
gi|391643391|gb|EIS81568.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-71]
gi|391646143|gb|EIS83934.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-72]
gi|391649499|gb|EIS86880.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-66]
gi|391655941|gb|EIS92624.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-76]
gi|391662855|gb|EIS98753.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-88]
gi|391667903|gb|EIT03182.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-89]
gi|391669457|gb|EIT04587.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-90]
gi|391673084|gb|EIT07839.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-91]
gi|391687122|gb|EIT20468.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-93]
gi|391688708|gb|EIT21903.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-92]
gi|391690002|gb|EIT23078.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-94]
gi|391701249|gb|EIT33273.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-95]
gi|391704389|gb|EIT36051.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-96]
gi|391705044|gb|EIT36644.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-98]
gi|391715923|gb|EIT46422.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-99]
gi|391720697|gb|EIT50697.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-100]
gi|391721254|gb|EIT51208.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-101]
gi|391731700|gb|EIT60369.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-102]
gi|391734364|gb|EIT62627.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-103]
gi|391737532|gb|EIT65409.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-113]
gi|411177986|gb|EKS47998.1| 16S rRNA methyltransferase B [Yersinia pestis INS]
Length = 429
Score = 213 bits (542), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 118/331 (35%), Positives = 196/331 (59%), Gaps = 32/331 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + + N +S++ +P W + ++K YP QW+ ILD +++P
Sbjct: 117 LINGVLRQFQRQQVELLERAVNN--DSHYLHPSWLLARIKQAYPA--QWQQILDANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGL--ETTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + Y +LL ++ + E I A++L TP +++ +P F G+ ++QD
Sbjct: 173 PMWLRVNRLHHSRSEYLELLTQADINAEPHPIYRDAVRLITPCAVNHLPGFELGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LLD ++G +LD C+APGGKT H+LE A +++VD + RL+ + ENL+R
Sbjct: 233 ASAQGCVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLSRVKENLQR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L+A + + D + + ++ FDRIL D PC+ +GV+RR+PD
Sbjct: 293 LQLQAVVRVGDGRAPDT----------------WCGDQQFDRILLDAPCSATGVIRRHPD 336
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR DI +L++ +I+ +W LK GG L++ TCS+ EE+++Q F + H ++
Sbjct: 337 IKWLRRDRDISELAQLQSEIIEAIWPKLKHGGVLVYATCSILPEENQQQIAAFLQRHPEA 396
Query: 298 I-----RLNSPG-QLLPTVNKKQDYDGFFYS 322
+PG Q LP +D DGFFY+
Sbjct: 397 QLTETGTTAAPGKQNLP---HPEDGDGFFYA 424
>gi|385786294|ref|YP_005817403.1| Ribosomal RNA small subunit methyltransferase B [Erwinia sp.
Ejp617]
gi|310765566|gb|ADP10516.1| Ribosomal RNA small subunit methyltransferase B [Erwinia sp.
Ejp617]
Length = 441
Score = 213 bits (542), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 120/336 (35%), Positives = 192/336 (57%), Gaps = 32/336 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + N + + +P W + ++K +P QW+ I+ +++P
Sbjct: 129 LINGVLRQFQRQQDELMQQ--MNDGDQQYLHPKWLLERLKRAWP--VQWQQIVAANNQRP 184
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLE--TTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N++ + ++ LL++SG + T A++L P ++ ++P F G+ ++QD
Sbjct: 185 PMWLRVNRQHHSRDAWLALLEESGKQAFTHPRHSDALRLELPCAVHQLPGFDQGWVTVQD 244
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LL R G +LD C+APGGKT H+LE A K+++VD + RL ISENL+R
Sbjct: 245 ASAQGCVALLAPRDGEQILDLCAAPGGKTTHILEAAPQAKVLAVDVDAQRLARISENLQR 304
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
LNL A + L D + ++ FDRIL D PC+ +GV+RR+PD
Sbjct: 305 LNLHAEVKLGD----------------GRTPAAWCGDRLFDRILLDAPCSATGVIRRHPD 348
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR DI +L+ +IL+ +W LK GG LL+ TCS+ EE+ Q F + H ++
Sbjct: 349 IKWLRRDRDIAELAALQQQILDAVWPYLKSGGTLLYATCSVLPEENHLQISQFLQRHANA 408
Query: 298 I-----RLNSPG-QLLPTVNKKQDYDGFFYSLFQKR 327
+ L PG Q+ P V+ DGF+Y+ K+
Sbjct: 409 VLVETGDLTQPGIQVFPQVDGG---DGFYYAKLVKK 441
>gi|416424233|ref|ZP_11691490.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|416435013|ref|ZP_11697983.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|416437074|ref|ZP_11698599.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|416448820|ref|ZP_11706524.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|416453441|ref|ZP_11709587.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|416461760|ref|ZP_11715462.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|416462973|ref|ZP_11715744.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|416476110|ref|ZP_11720954.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|416489900|ref|ZP_11726502.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|416502487|ref|ZP_11732799.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|416510253|ref|ZP_11736928.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB31]
gi|416516404|ref|ZP_11739086.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. ATCC BAA710]
gi|416525274|ref|ZP_11741536.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. LQC 10]
gi|416539547|ref|ZP_11750007.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB30]
gi|416543702|ref|ZP_11752427.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|416552262|ref|ZP_11756985.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 29N]
gi|416559522|ref|ZP_11760747.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 42N]
gi|416567101|ref|ZP_11764184.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 4441 H]
gi|416575689|ref|ZP_11768505.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|416582083|ref|ZP_11772421.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|416595299|ref|ZP_11781112.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|416602552|ref|ZP_11785348.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|416606254|ref|ZP_11787628.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|416613521|ref|ZP_11792075.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|416618637|ref|ZP_11794650.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|416634992|ref|ZP_11802843.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|416641509|ref|ZP_11805501.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|416647709|ref|ZP_11808539.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|416659333|ref|ZP_11814770.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|416668369|ref|ZP_11818866.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|416672429|ref|ZP_11820691.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|416692150|ref|ZP_11826350.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|416704455|ref|ZP_11830277.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|416714222|ref|ZP_11837614.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|416720711|ref|ZP_11842312.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|416721774|ref|ZP_11842895.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|416729763|ref|ZP_11848248.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|416741935|ref|ZP_11855461.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|416747466|ref|ZP_11858240.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|416754116|ref|ZP_11861135.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|416763312|ref|ZP_11867001.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|416766416|ref|ZP_11869111.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|418482260|ref|ZP_13051282.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 80959-06]
gi|418489967|ref|ZP_13056525.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035278]
gi|418495173|ref|ZP_13061617.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035318]
gi|418498824|ref|ZP_13065237.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035320]
gi|418503541|ref|ZP_13069901.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035321]
gi|418510118|ref|ZP_13076406.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035327]
gi|418525411|ref|ZP_13091392.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008286]
gi|322615051|gb|EFY11975.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|322617338|gb|EFY14239.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|322625560|gb|EFY22385.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|322626402|gb|EFY23211.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|322632086|gb|EFY28839.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|322635035|gb|EFY31758.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|322643264|gb|EFY39831.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|322646652|gb|EFY43159.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|322649998|gb|EFY46417.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|322652715|gb|EFY49055.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|322659528|gb|EFY55772.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|322665530|gb|EFY61717.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|322670424|gb|EFY66563.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|322670497|gb|EFY66631.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|322675073|gb|EFY71156.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|322681610|gb|EFY77639.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|322685954|gb|EFY81943.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|323195824|gb|EFZ80997.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|323196420|gb|EFZ81571.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|323202705|gb|EFZ87744.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|323211254|gb|EFZ96099.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|323216037|gb|EGA00768.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|323223472|gb|EGA07800.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|323226798|gb|EGA10988.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|323231840|gb|EGA15950.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|323233207|gb|EGA17302.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|323237274|gb|EGA21339.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|323245509|gb|EGA29508.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|323249015|gb|EGA32937.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|323250638|gb|EGA34519.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|323256867|gb|EGA40581.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|323263016|gb|EGA46563.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|323266016|gb|EGA49511.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|323272773|gb|EGA56176.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|363549377|gb|EHL33731.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB31]
gi|363559191|gb|EHL43366.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. LQC 10]
gi|363559897|gb|EHL44046.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB30]
gi|363562421|gb|EHL46519.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. ATCC BAA710]
gi|363564748|gb|EHL48790.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 29N]
gi|363575877|gb|EHL59723.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 42N]
gi|363579115|gb|EHL62909.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 4441 H]
gi|366059722|gb|EHN23990.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035318]
gi|366064233|gb|EHN28434.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 80959-06]
gi|366068338|gb|EHN32482.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035278]
gi|366072629|gb|EHN36718.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035321]
gi|366073067|gb|EHN37145.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035320]
gi|366077222|gb|EHN41241.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035327]
gi|366830144|gb|EHN57017.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|372206676|gb|EHP20179.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008286]
Length = 429
Score = 213 bits (542), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 113/332 (34%), Positives = 194/332 (58%), Gaps = 34/332 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + ++ + +P W + +++ YP QW+ I+D +++P
Sbjct: 117 LINGVLRQFQRQQETLLNE--FATSDARFLHPGWLVKRLQNAYPT--QWQRIIDANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T + LL+ +G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ A L ++G ++LD C+APGGKT H+LE+A + +++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVASEADVLAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LKPGG L++ TCS+ EE+ +Q F +
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKAFLQRTP 394
Query: 296 DSI-----RLNSPGQLLPTVNKKQDYDGFFYS 322
D+ + PGQ + ++ DGFFY+
Sbjct: 395 DATLSETGTPDQPGQQ--NLPGGEEGDGFFYA 424
>gi|383311412|ref|YP_005364222.1| ribosomal RNA small subunit methyltransferase B [Pasteurella
multocida subsp. multocida str. HN06]
gi|386835435|ref|YP_006240754.1| ribosomal RNA small subunit methyltransferase B [Pasteurella
multocida subsp. multocida str. 3480]
gi|380872684|gb|AFF25051.1| ribosomal RNA small subunit methyltransferase B [Pasteurella
multocida subsp. multocida str. HN06]
gi|385202140|gb|AFI46995.1| ribosomal RNA small subunit methyltransferase B [Pasteurella
multocida subsp. multocida str. 3480]
Length = 446
Score = 213 bits (542), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 126/341 (36%), Positives = 192/341 (56%), Gaps = 39/341 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
++N +LR FLR++ E K+ + +W+ +P W +N++K YPN W+ I++ +
Sbjct: 127 LVNGVLRRFLREQ-ETLLVKV----DKHWHTLHPDWLVNRLKEAYPN---WREIVEANNH 178
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLETT-IIGPLAIKLHTPISISKIPKFFNGFCSIQ 117
KPP+ LR+NQ+K + +Y LL + G+E P A++L P+++S++P F G S+Q
Sbjct: 179 KPPMWLRVNQQKNSTETYRTLLAEQGIEAEKADNPCALRLLQPVAVSQLPAFHEGAVSVQ 238
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
D AQ +A LL +G +LDAC+APGGKT H+LE A ++++D +RL + ENL
Sbjct: 239 DVNAQWSALLLAPENGELILDACAAPGGKTTHILEQAPQAHVVALDVEATRLKRVHENLA 298
Query: 177 RLNLKATLILSDISKIN--LKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRR 234
R+ +AT+I D ++ LK+L + FDRIL D PC+ +GV+RR
Sbjct: 299 RMQQQATVICGDATQPAQWLKQLSESAVQ-------------FDRILLDAPCSATGVIRR 345
Query: 235 NPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH 294
+PDI WLR+ +DI L +IL LW +LKP G LL+ TCS+ EE+ Q F N+
Sbjct: 346 HPDIKWLRQASDISALVALQKQILQALWTVLKPNGILLYATCSVLPEENVLQIEQFLTNN 405
Query: 295 KD---------SIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 326
D ++ Q LPT N DGF+Y +K
Sbjct: 406 VDAKLEPLPFTAVEGAVGYQFLPTENGG---DGFYYVKLRK 443
>gi|45434953|gb|AAS60514.1| tRNA and rRNA cytosine-C5-methylases [Yersinia pestis biovar
Microtus str. 91001]
Length = 435
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 118/331 (35%), Positives = 196/331 (59%), Gaps = 32/331 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + + N +S++ +P W + ++K YP QW+ ILD +++P
Sbjct: 123 LINGVLRQFQRQQVELLERAVNN--DSHYLHPSWLLARIKQAYPA--QWQQILDANNQRP 178
Query: 61 PLTLRINQRKTTLISYNKLLKKSGL--ETTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + Y +LL ++ + E I A++L TP +++ +P F G+ ++QD
Sbjct: 179 PMWLRVNRLHHSRSEYLELLTQADINAEPHPIYRDAVRLITPCAVNHLPGFELGWVTVQD 238
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LLD ++G +LD C+APGGKT H+LE A +++VD + RL+ + ENL+R
Sbjct: 239 ASAQGCVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLSRVKENLQR 298
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L+A + + D + + ++ FDRIL D PC+ +GV+RR+PD
Sbjct: 299 LQLQAVVRVGDGRAPDT----------------WCGDQQFDRILLDAPCSATGVIRRHPD 342
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR DI +L++ +I+ +W LK GG L++ TCS+ EE+++Q F + H ++
Sbjct: 343 IKWLRRDRDISELAQLQSEIIEAIWPKLKHGGVLVYATCSILPEENQQQIAAFLQRHPEA 402
Query: 298 I-----RLNSPG-QLLPTVNKKQDYDGFFYS 322
+PG Q LP +D DGFFY+
Sbjct: 403 QLTETGTTAAPGKQNLP---HPEDGDGFFYA 430
>gi|343518431|ref|ZP_08755423.1| ribosomal RNA small subunit methyltransferase B [Haemophilus
pittmaniae HK 85]
gi|343393719|gb|EGV06272.1| ribosomal RNA small subunit methyltransferase B [Haemophilus
pittmaniae HK 85]
Length = 445
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 122/341 (35%), Positives = 195/341 (57%), Gaps = 39/341 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
++N +LR FLR++ +I I + +W +P W++N++K YPN W+ I++ ++
Sbjct: 126 LVNGVLRRFLREQEDILA-----IVDKHWQTLHPEWFVNKLKKAYPN---WREIIEANNQ 177
Query: 59 KPPLTLRINQRKTTLISYNKLLKK---SGLETTIIGPLAIKLHTPISISKIPKFFNGFCS 115
KPP+ LR+NQ++ +Y LL++ S E P A++L P+S++K+P F G +
Sbjct: 178 KPPMWLRVNQQQNNTETYRALLEELEISAFECD--NPHALRLAQPLSVTKLPNFEQGAVT 235
Query: 116 IQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISEN 174
+QD AQ +A LL+ ++ +LDAC+APGGKT H+LE+A K+I++D RL + EN
Sbjct: 236 VQDLNAQWSALLLEPQNDELILDACAAPGGKTTHILEMAPQAKVIALDVEAHRLKRVEEN 295
Query: 175 LKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRR 234
L RL+ +AT++ D + +K +I + FDRIL D PC+ +GV+RR
Sbjct: 296 LARLHQQATVVYGDAT--TPEKWLAEIG---------LSGQLFDRILLDAPCSATGVIRR 344
Query: 235 NPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH 294
+PDI WLR++ DI +L +IL LW LKP G LL+ TCS+ +E+ +Q F
Sbjct: 345 HPDIKWLRQETDIAQLVALQGQILKALWAKLKPNGILLYATCSVLPDENSQQIQHFLTET 404
Query: 295 KDSIRLNSP---------GQLLPTVNKKQDYDGFFYSLFQK 326
D+ + P Q LP ++ DGF+Y+ +K
Sbjct: 405 PDAELMPLPFERTESAVGVQFLP---QEHGGDGFYYAKLRK 442
>gi|303249608|ref|ZP_07335814.1| SUN protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
gi|307253218|ref|ZP_07535093.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|302651541|gb|EFL81691.1| SUN protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
gi|306859306|gb|EFM91344.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
Length = 432
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 128/338 (37%), Positives = 188/338 (55%), Gaps = 42/338 (12%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
+IN +LR FLR+K + + W +P W++N++K YPN W+ I+D ++
Sbjct: 116 LINGVLRRFLREKDSLLAK-----FDKNWQTLHPEWFVNKLKKAYPN---WREIIDANNQ 167
Query: 59 KPPLTLRINQRKTTLISYNKLL-----KKSGLETTIIGPLAIKLHTPISISKIPKFFNGF 113
+PP+ +R N ++ Y LL K S T + AI L P+ ++K+ F G+
Sbjct: 168 RPPMWIRSNIQRIKPQDYRVLLGDLVAKNSENMTACVPESAILLANPVPVNKLMNFEQGW 227
Query: 114 CSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMIS 172
++QDA AQ +A LL+ ++G +LDAC+APGGKT H+LE A K+I++D SRL +
Sbjct: 228 ATVQDAHAQWSAALLEAQNGELILDACAAPGGKTTHILEAAPQAKVIALDIEESRLKRVR 287
Query: 173 ENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVV 232
ENL RL AT+I D SK ++D FDRIL D PC+ +GV+
Sbjct: 288 ENLARLGQTATVICGDASK---PAEWLD------------DGVMFDRILLDAPCSATGVI 332
Query: 233 RRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSK 292
RR+PDI WLR++NDI +L KIL LW LKP G L++ TCS+ EE+ EQ F
Sbjct: 333 RRHPDIKWLRKENDIAELVALQEKILEALWGRLKPRGVLVYATCSVLPEENGEQITRFVA 392
Query: 293 NHKDS--IRLNSPG------QLLPTVNKKQDYDGFFYS 322
+H D+ + ++ G Q P ++Q DGFFY+
Sbjct: 393 SHSDAEWVEMDFNGEKTAMKQFFP---QEQGGDGFFYA 427
>gi|168239759|ref|ZP_02664817.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|194736151|ref|YP_002116352.1| 16S rRNA methyltransferase GidB [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|224493267|sp|B4TXB2.1|RSMB_SALSV RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|194711653|gb|ACF90874.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
CVM19633]
gi|197287575|gb|EDY26967.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
Length = 429
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 113/332 (34%), Positives = 194/332 (58%), Gaps = 34/332 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + ++ + +P W + +++ YP QW+ I+D +++P
Sbjct: 117 LINGVLRQFQRQQETLLNE--FATSDARFLHPGWLVKRLQNAYPT--QWQRIIDANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T + LL+ +G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ A L ++G ++LD C+APGGKT H+LE+A + +++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCAVFLAPQNGEHILDLCAAPGGKTSHILEVAPEADVLAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LKPGG L++ TCS+ EE+ +Q F +
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKTFLQRTP 394
Query: 296 DSI-----RLNSPGQLLPTVNKKQDYDGFFYS 322
D+ + PGQ + ++ DGFFY+
Sbjct: 395 DAALSETGTPDQPGQQ--NLPGGEEGDGFFYA 424
>gi|149190437|ref|ZP_01868708.1| Sun protein [Vibrio shilonii AK1]
gi|148835691|gb|EDL52657.1| Sun protein [Vibrio shilonii AK1]
Length = 425
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 113/334 (33%), Positives = 196/334 (58%), Gaps = 30/334 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R + ++ + + + + + +P W + ++ +YP QW+ I++ + K
Sbjct: 113 LINAVLRNYQRNQEQLDEISVSH-NAGKYGHPSWLLKLLQESYPQ--QWEMIVEANNTKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + Y LLK G+++T A+KL P ++ +P F G+ S+QD
Sbjct: 170 PMWLRVNHQHLNRDDYQALLKNEGIDSTAHSEALDALKLAAPCDVNNLPGFDKGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQL+ L+ + G +LD C+APGGKT H+LE D +++++D + +RL + +NLKR
Sbjct: 230 AAAQLSINYLEPKDGELILDCCAAPGGKTAHILERTKDSQVVAIDCDETRLKRVHDNLKR 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L+A ++ D +++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 290 LKLQAKVVCGD----------------ARTPSEWWQGEQFDRILLDAPCSATGVIRRHPD 333
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI+ L++ +I + +W+ LK GG L++ TCS+ +E++EQ F ++
Sbjct: 334 IKWLRRADDIEALAELQREIFDAMWQQLKVGGTLVYATCSITPQENKEQVKAFLARTDNA 393
Query: 298 IRLNS----PG-QLLPTVNKKQDYDGFFYSLFQK 326
++S PG Q+LP ++D DGF+Y++ +K
Sbjct: 394 QLIDSDIDNPGRQILPG---EEDMDGFYYAVLKK 424
>gi|259909968|ref|YP_002650324.1| 16S rRNA methyltransferase B [Erwinia pyrifoliae Ep1/96]
gi|224965590|emb|CAX57122.1| 16S rRNA methyltransferase B [Erwinia pyrifoliae Ep1/96]
Length = 429
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 120/336 (35%), Positives = 192/336 (57%), Gaps = 32/336 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + N + + +P W + ++K +P QW+ I+ +++P
Sbjct: 117 LINGVLRQFQRQQDELMQQ--MNDGDQQYLHPKWLLERLKRAWP--VQWQQIVAANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLE--TTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N++ + ++ LL++SG + T A++L P ++ ++P F G+ ++QD
Sbjct: 173 PMWLRVNRQHHSRDTWLALLEESGKQAFTHPRHSDALRLELPCAVHQLPGFDQGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LL R G +LD C+APGGKT H+LE A K+++VD + RL ISENL+R
Sbjct: 233 ASAQGCVALLAPRDGEQILDLCAAPGGKTTHILEAAPQAKVLAVDVDAQRLARISENLQR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
LNL A + L D + ++ FDRIL D PC+ +GV+RR+PD
Sbjct: 293 LNLHAEVKLGD----------------GRTPAAWCGDRLFDRILLDAPCSATGVIRRHPD 336
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR DI +L+ +IL+ +W LK GG LL+ TCS+ EE+ Q F + H ++
Sbjct: 337 IKWLRRDRDIAELAALQQQILDAVWPYLKSGGTLLYATCSVLPEENHLQISQFLQRHANA 396
Query: 298 I-----RLNSPG-QLLPTVNKKQDYDGFFYSLFQKR 327
+ L PG Q+ P V+ DGF+Y+ K+
Sbjct: 397 VLVETGDLTQPGIQVFPQVDGG---DGFYYAKLVKK 429
>gi|167554205|ref|ZP_02347946.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
gi|205321540|gb|EDZ09379.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
Length = 429
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 113/332 (34%), Positives = 194/332 (58%), Gaps = 34/332 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + ++ + +P W + +++ YP QW+ I+D +++P
Sbjct: 117 LINGVLRQFQRQQETLINE--FATSDARFLHPGWLVKRLQNAYPT--QWQRIIDANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T + LL+ +G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ A L ++G ++LD C+APGGKT H+LE+A + +++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVLAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LKPGG L++ TCS+ EE+ +Q F +
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKAFLQRTP 394
Query: 296 DSI-----RLNSPGQLLPTVNKKQDYDGFFYS 322
D+ + PGQ + ++ DGFFY+
Sbjct: 395 DAALSETGTPDQPGQQ--NLPGGEEGDGFFYA 424
>gi|419845609|ref|ZP_14368876.1| ribosomal RNA small subunit methyltransferase B [Haemophilus
parainfluenzae HK2019]
gi|386415477|gb|EIJ30009.1| ribosomal RNA small subunit methyltransferase B [Haemophilus
parainfluenzae HK2019]
Length = 445
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 125/340 (36%), Positives = 196/340 (57%), Gaps = 35/340 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
++N +LR FLR+K +I ++ + W +P W++N++K YPN W+ I++ ++
Sbjct: 126 LVNGVLRRFLREKEDIL-----SVVDKNWQTLHPEWFVNKLKKAYPN---WREIIEANNQ 177
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLET-TIIGPLAIKLHTPISISKIPKFFNGFCSIQ 117
KPP+ LRINQ++ +Y+ LL++ + + P A++L P+S+SK+P F G ++Q
Sbjct: 178 KPPMWLRINQQQNNTKTYHTLLEEQEIVSLECDNPHALRLAQPLSVSKLPNFEQGAVTVQ 237
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
D AQ +A LL+ ++ +LDAC+APGGKT H+LEIA K+I++D RL + ENL
Sbjct: 238 DLNAQWSALLLEPQNDELILDACAAPGGKTTHILEIAPQAKVIALDVEAHRLKRVEENLT 297
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RLN +A ++ D ++ +K +I FDRIL D PC+ +GV+RR+P
Sbjct: 298 RLNQQAVVVCGDATEP--EKWLSEIG---------LSGASFDRILLDAPCSATGVIRRHP 346
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR++ DI +L +IL LW LKP G LL+ TCS+ +E+ +Q F +
Sbjct: 347 DIKWLRQETDIAQLVALQRQILKALWAKLKPNGILLYATCSVLPDENSQQIQRFLAETSN 406
Query: 297 SIRL--------NSPG-QLLPTVNKKQDYDGFFYSLFQKR 327
+ N+ G Q LP N DGF+Y+ +KR
Sbjct: 407 VELMPLPFEQTENTIGIQFLPQENGG---DGFYYAKLRKR 443
>gi|335041811|ref|ZP_08534838.1| tRNA and rRNA cytosine-C5-methylase [Methylophaga
aminisulfidivorans MP]
gi|333788425|gb|EGL54307.1| tRNA and rRNA cytosine-C5-methylase [Methylophaga
aminisulfidivorans MP]
Length = 437
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 118/337 (35%), Positives = 192/337 (56%), Gaps = 29/337 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA LR +LR++ +I + + N +Y +P W ++Q + +P W++I + +K+P
Sbjct: 120 LLNACLRNYLRQQEQIEQKLLANDPANY-GHPSWLLSQYQQDWPE--SWQDITNANNKQP 176
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+NQ+K + +Y + L+ + +II I L P + K+P F G+ S+QD
Sbjct: 177 PMMLRVNQQKVSREAYLQQLESEQIAASIIEATDQGILLDQPCDVYKLPGFEEGWVSVQD 236
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
+AQLA +L+I G VLDAC+APGGKTCH+LE + + + ++D + RL I +N R
Sbjct: 237 GSAQLATTILNITPGQRVLDACAAPGGKTCHILETSPENDVTAIDISSDRLLQIQQNTDR 296
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L ATL+ +D + N ++ + FDRIL D PCTGSGV+RR+PD
Sbjct: 297 LGLHATLVAADAADTN----------------HWWNGQAFDRILIDAPCTGSGVIRRHPD 340
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I LR DI L+ +L+ LW +LK G +++ TCS + +E+E+Q F + H D+
Sbjct: 341 IKLLRHPEDIDTLASKQQALLDKLWPLLKADGLMVYTTCSAFKKENEQQIEAFLQRHPDA 400
Query: 298 --IRLNS-PGQLLP----TVNKKQDYDGFFYSLFQKR 327
++L+S P P + DGF+Y+ +++
Sbjct: 401 EEVKLSSTPATARPFGYQRLPGDDVMDGFYYACLRRK 437
>gi|238913877|ref|ZP_04657714.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Tennessee str. CDC07-0191]
Length = 429
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 112/332 (33%), Positives = 195/332 (58%), Gaps = 34/332 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQETLLNE--FATSDARFLHPGWLVKRLQNAYPT--QWQHIIEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T + LL+ +G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ A L ++G ++LD C+APGGKT H+LE+A + +++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LKPGG L++ TCS+ EE+ +Q F +
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKTFLQRTP 394
Query: 296 DSI-----RLNSPGQLLPTVNKKQDYDGFFYS 322
D+ + PGQ + ++ DGFFY+
Sbjct: 395 DAALSETGTPDQPGQQ--NLPGGEEGDGFFYA 424
>gi|254467784|ref|ZP_05081190.1| sun protein [beta proteobacterium KB13]
gi|207086594|gb|EDZ63877.1| sun protein [beta proteobacterium KB13]
Length = 412
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 123/336 (36%), Positives = 190/336 (56%), Gaps = 42/336 (12%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR +LR+K ++ + I ++YP WW++ + YPN ++ IL +G+ +
Sbjct: 108 LVNAVLRNYLREKDKLVTPEEMYIR---YSYPQWWVSDLMKEYPN--DYEAILAIGNTRA 162
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTI-IGPLAIKLHTPISISKIPKFFNGFCSIQDA 119
+RINQR+ +L Y LL+++ ++ + + I++ I+ +P + G +QD
Sbjct: 163 KTVIRINQRQISLNDYIDLLEQANIDYELTLEDKYIQISNVKDITMLPGYERGHFYVQDP 222
Query: 120 AAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLN 179
AAQLA LDI++GM +LD CSAPGGK H+LE D+ L D + R+N+I N+KRL
Sbjct: 223 AAQLACDFLDIQNGMNILDLCSAPGGKATHILERFDVDLDCYDISKERINLIRSNMKRLQ 282
Query: 180 LKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIP 239
LK+ +I IDINK+ +DRIL D PC+GSGVVRRN DI
Sbjct: 283 LKSNIIEK-----------IDINKR------------YDRILIDAPCSGSGVVRRNIDIK 319
Query: 240 WLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIR 299
+R++ DI+K S ++L WK+LK GGKLL+VTCS++ E+E + F +KD+
Sbjct: 320 LMRKQQDIEKFSNQQLQLLEEGWKILKSGGKLLYVTCSIFKHENENVVMKFLSKNKDAAS 379
Query: 300 LN---------SPGQLLPTVNKKQDYDGFFYSLFQK 326
+ QL+P Q +DG F+ +F K
Sbjct: 380 QDLIIPNGFKYQNTQLIPN----QFHDGLFFKIFSK 411
>gi|365846738|ref|ZP_09387238.1| ribosomal RNA small subunit methyltransferase B [Yokenella
regensburgei ATCC 43003]
gi|364573468|gb|EHM50964.1| ribosomal RNA small subunit methyltransferase B [Yokenella
regensburgei ATCC 43003]
Length = 439
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 114/330 (34%), Positives = 195/330 (59%), Gaps = 30/330 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ N E+ + +P W + ++K YP QW++I++ +++P
Sbjct: 127 LINGVLRQFQRQQEELLAEFAQN--ETRFLHPSWLLKRIKNAYPQ--QWESIVEANNQRP 182
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + ++ +LL+++GL P A++L TP + +P F +G+ ++QD
Sbjct: 183 PMWLRVNRNHHSRDAWMQLLEETGLNGFPHPDYPDAVRLETPAPVHALPGFDDGWVTVQD 242
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L +G +LD C+APGGKT H+LE+A + +++VD + +RL+ + +NLKR
Sbjct: 243 ASAQGCMTWLTPENGEQILDLCAAPGGKTTHILEVAPEANVLAVDVDEARLSRVYDNLKR 302
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KA + K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 303 LGMKAQV------------------KQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRH 344
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L+ +IL+ +W LK GG L++ TCS+ EE+ EQ F +
Sbjct: 345 PDIKWLRRDRDIPELAGLQREILDAIWPHLKSGGTLVYATCSILPEENCEQVRAFLERTP 404
Query: 296 DSIRLNSPGQLLPTVNK---KQDYDGFFYS 322
D++ ++ Q P + +D DGFFY+
Sbjct: 405 DAVLSDTGTQEQPGIQNLPGAEDGDGFFYA 434
>gi|37681411|ref|NP_936020.1| sun protein [Vibrio vulnificus YJ016]
gi|320154882|ref|YP_004187261.1| ribosomal RNA small subunit methyltransferase B [Vibrio vulnificus
MO6-24/O]
gi|46396771|sp|Q7MGK4.1|RSMB_VIBVY RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|37200163|dbj|BAC95991.1| sun protein [Vibrio vulnificus YJ016]
gi|319930194|gb|ADV85058.1| ribosomal RNA small subunit methyltransferase B [Vibrio vulnificus
MO6-24/O]
Length = 426
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 118/335 (35%), Positives = 190/335 (56%), Gaps = 30/335 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R++ + + + + Y +P W + ++ YP QW+ I++ + K
Sbjct: 113 LINAVLRNYQREQQALDEFSVSHNAGKY-VHPSWLLKILQDAYPE--QWQTIVEANNNKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N Y +LLK + +++T+ AIKL P + +P F G+ S+QD
Sbjct: 170 PMWLRVNHAHHDRDEYLQLLKNANIDSTLHSEAMDAIKLAAPCDVHSLPGFEQGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQL+ L + G +LD C+APGGKT H+LE ++ +++++D + RL ++ENLKR
Sbjct: 230 AAAQLSFNYLQPKDGELILDCCAAPGGKTAHILERVSAREVVALDCDEQRLKRVTENLKR 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
LNL+A +I D N ++++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 290 LNLQAKVICGD----------------ARNPEQWWQGEQFDRILLDAPCSATGVIRRHPD 333
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIF-----SK 292
I WLRR DI L++ +I + +W LKPGG L++ TCS+ E+ EQ F +
Sbjct: 334 IKWLRRAEDITALAQLQSEIFDAMWAQLKPGGTLVYATCSITPMENVEQVKAFLARTPAA 393
Query: 293 NHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 327
S R N Q+LP ++D DGF+Y++ K+
Sbjct: 394 QLVGSERENPGRQILPG---EEDMDGFYYAVLVKQ 425
>gi|402843875|ref|ZP_10892259.1| ribosomal RNA small subunit methyltransferase B [Klebsiella sp.
OBRC7]
gi|402276040|gb|EJU25169.1| ribosomal RNA small subunit methyltransferase B [Klebsiella sp.
OBRC7]
Length = 431
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 111/330 (33%), Positives = 196/330 (59%), Gaps = 30/330 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ ++ E + +P W + +++ YP QW+ I++ +++P
Sbjct: 119 LINGVLRQFQRQQEELLSE--FSRSEIRFLHPSWLLKRLQKAYPA--QWEAIVEANNQRP 174
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLE--TTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ ++ LL+++G++ T P A+++ TP+ + +P F G+ ++QD
Sbjct: 175 PMWLRVNRTHHPRDTWLALLEEAGMKGFTHPAYPDAVRMETPVPVYALPGFEEGWVTVQD 234
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LD ++G +LD C+APGGKT H+LE A + ++++VD + RL+ + +NLKR
Sbjct: 235 ASAQGCITFLDPKNGEQILDLCAAPGGKTTHILEAAPEAQVLAVDVDEQRLSRVYDNLKR 294
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 295 LGMKATV------------------KQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRH 336
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ +Q F +
Sbjct: 337 PDIKWLRRDRDIAELAQLQSEILDAVWPHLKTGGTLVYATCSVLPEENSQQIKAFLQRTA 396
Query: 296 DSIRLNSPGQLLP---TVNKKQDYDGFFYS 322
D++ + LP + ++ DGFFY+
Sbjct: 397 DAVLSETGSADLPGQQNLPGAEEGDGFFYA 426
>gi|437822755|ref|ZP_20843465.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. SARB17]
gi|435306473|gb|ELO81763.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. SARB17]
Length = 429
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 113/332 (34%), Positives = 194/332 (58%), Gaps = 34/332 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + ++ + +P W + +++ YP QW++I+D +++P
Sbjct: 117 LINGVLRQFQRQQETLLNE--FATSDARFLHPGWLVKRLQNAYPT--QWQHIIDANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T + LL+ +G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ A L ++G ++LD C+APGGKT H+LE A + +++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCAVFLAPQNGEHILDLCAAPGGKTTHILEAAPEADVLAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LKPGG L++ TCS+ EE+ +Q F +
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKAFLQRTP 394
Query: 296 DSI-----RLNSPGQLLPTVNKKQDYDGFFYS 322
D+ + PGQ + ++ DGFFY+
Sbjct: 395 DAALSETGTPDQPGQQ--NLPGSEEGDGFFYA 424
>gi|419802936|ref|ZP_14328116.1| ribosomal RNA small subunit methyltransferase B [Haemophilus
parainfluenzae HK262]
gi|385189176|gb|EIF36645.1| ribosomal RNA small subunit methyltransferase B [Haemophilus
parainfluenzae HK262]
Length = 445
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 125/340 (36%), Positives = 195/340 (57%), Gaps = 35/340 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
++N +LR FLR+K +I ++ + W +P W++N++K YPN W+ I++ ++
Sbjct: 126 LVNGVLRRFLREKEDIL-----SVVDKNWQTLHPEWFVNKLKKAYPN---WREIIEANNQ 177
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLET-TIIGPLAIKLHTPISISKIPKFFNGFCSIQ 117
KPP+ LRINQ++ +Y LL++ + + P A++L P+S+SK+P F G ++Q
Sbjct: 178 KPPMWLRINQQQNNTKTYRTLLEEQEIVSLECDNPHALRLAQPLSVSKLPNFEQGAVTVQ 237
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
D AQ +A LL+ ++ +LDAC+APGGKT H+LEIA K+I++D RL + ENL
Sbjct: 238 DLNAQWSALLLEPQNDELILDACAAPGGKTTHILEIAPQAKVIALDVEAHRLKRVEENLT 297
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RLN +A ++ D ++ +K +I FDRIL D PC+ +GV+RR+P
Sbjct: 298 RLNQQAVVVCGDATEP--EKWLSEIG---------LSGASFDRILLDAPCSATGVIRRHP 346
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR++ DI +L +IL LW LKP G LL+ TCS+ +E+ +Q F +
Sbjct: 347 DIKWLRQETDIAQLVALQRQILKALWAKLKPNGILLYATCSVLPDENSQQIQRFLAETSN 406
Query: 297 SIRL--------NSPG-QLLPTVNKKQDYDGFFYSLFQKR 327
+ N+ G Q LP N DGF+Y+ +KR
Sbjct: 407 VELMPLPFEQTENTIGIQFLPQENGG---DGFYYAKLRKR 443
>gi|373951658|ref|ZP_09611619.1| sun protein [Shewanella baltica OS183]
gi|386322524|ref|YP_006018641.1| sun protein [Shewanella baltica BA175]
gi|333816669|gb|AEG09335.1| sun protein [Shewanella baltica BA175]
gi|373888258|gb|EHQ17150.1| sun protein [Shewanella baltica OS183]
Length = 428
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 115/302 (38%), Positives = 177/302 (58%), Gaps = 26/302 (8%)
Query: 29 WNYPIWWINQVKITYPNFFQWKNILDVGHKKPPLTLRINQRKTTLISYNKLLKKSGLETT 88
+N P W I ++K YP QW++I+ H++PP+ LR N+ + Y L + +E +
Sbjct: 138 YNTPAWLIKRLKEAYPE--QWQDIIQQSHERPPMWLRNNRLSQSRTEYLAALAELEIEAS 195
Query: 89 IIGPL-AIKLHTPISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKT 147
AI L P ++ +P+F G S+QD AAQ AA LL ++ +LDAC+APGGK+
Sbjct: 196 EGSSADAILLAHPKDVAILPRFHEGAASVQDGAAQWAATLLAPQANELILDACAAPGGKS 255
Query: 148 CHLLEIA-DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTN 206
CHLLE+ IKL++VD + RL + +NL RL+LKA LI D + I+
Sbjct: 256 CHLLELEPSIKLVAVDFDAKRLERVQQNLDRLSLKAELIHGDAANID------------- 302
Query: 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLK 266
+++ FDRIL D PC+ +GV+RR+PDI WLR+ +DI++L++ +IL++ WK LK
Sbjct: 303 ---SWWQGGQFDRILLDAPCSATGVIRRHPDIKWLRKNHDIEELAELQQQILDHCWKWLK 359
Query: 267 PGGKLLFVTCSLWFEESEEQAIIFSKNHKDS-----IRLNSPGQLLPTVNKKQD-YDGFF 320
PGG +L+ TCS+ +E+ +Q F + D+ + NSP + + QD DGF+
Sbjct: 360 PGGTILYATCSILPQENRDQISAFLERTADAKLDTLSQQNSPQDIGWQITPGQDNMDGFY 419
Query: 321 YS 322
Y+
Sbjct: 420 YA 421
>gi|161616434|ref|YP_001590399.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Paratyphi B str. SPB7]
gi|197262016|ref|ZP_03162090.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|224493265|sp|A9N8B3.1|RSMB_SALPB RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|161365798|gb|ABX69566.1| hypothetical protein SPAB_04249 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|197240271|gb|EDY22891.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
Length = 429
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 112/332 (33%), Positives = 194/332 (58%), Gaps = 34/332 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + ++ + +P W + +++ YP QW+ I++ +++P
Sbjct: 117 LINGVLRQFQRQQETLLNE--FATSDARFLHPGWLVKRLQNAYPT--QWQRIIEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T + LL+ +G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ A L ++G ++LD C+APGGKT H+LE+A + +++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LKPGG L++ TCS+ EE+ +Q F +
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKTFLQRTP 394
Query: 296 DSI-----RLNSPGQLLPTVNKKQDYDGFFYS 322
D+ + PGQ + ++ DGFFY+
Sbjct: 395 DAALSETGTPDQPGQQ--NLPGGEEGDGFFYA 424
>gi|423105145|ref|ZP_17092847.1| ribosomal RNA small subunit methyltransferase B [Klebsiella oxytoca
10-5242]
gi|376381911|gb|EHS94647.1| ribosomal RNA small subunit methyltransferase B [Klebsiella oxytoca
10-5242]
Length = 429
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 111/330 (33%), Positives = 196/330 (59%), Gaps = 30/330 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ ++ E + +P W + +++ YP QW+ I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLSE--FSRSEIRFLHPSWLLKRLQKAYPA--QWEAIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLE--TTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ ++ LL+++G++ T P A+++ TP+ + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHPRDTWLALLEEAGMKGFTHPAYPDAVRMETPVPVYALPGFEEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LD ++G +LD C+APGGKT H+LE A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCITFLDPKNGEQILDLCAAPGGKTTHILEAAPEAQVLAVDVDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ +Q F +
Sbjct: 335 PDIKWLRRDRDIAELAQLQSEILDAVWPHLKTGGTLVYATCSVLPEENSQQIKAFLQRTA 394
Query: 296 DSIRLNSPGQLLP---TVNKKQDYDGFFYS 322
D++ + LP + ++ DGFFY+
Sbjct: 395 DAVLSETGSADLPGQQNLPGAEEGDGFFYA 424
>gi|407693308|ref|YP_006818097.1| 16S rRNA methyltransferase B [Actinobacillus suis H91-0380]
gi|407389365|gb|AFU19858.1| 16S rRNA methyltransferase B [Actinobacillus suis H91-0380]
Length = 391
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 123/338 (36%), Positives = 191/338 (56%), Gaps = 42/338 (12%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
+ N +LR FLR++ +I + + +W +P W++N++K YP+ W+ I++ ++
Sbjct: 74 LTNGVLRRFLREQAQILA-----VADKHWQTLHPDWFVNRIKKVYPH---WREIVEANNQ 125
Query: 59 KPPLTLRINQRKTTLISYNKLL-----KKSGLETTIIGPLAIKLHTPISISKIPKFFNGF 113
+PP+ +R NQ+ Y LL K S T + AI L P+ ++K+ F G+
Sbjct: 126 RPPMWIRANQQHIKAQDYAVLLGELVVKNSENSTACVPDCAILLENPVPVAKLMHFEQGW 185
Query: 114 CSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMIS 172
++QDA AQ +A LL ++G VLDAC+APGGKT H+LE A ++I++D +RL +
Sbjct: 186 ATVQDAHAQWSAELLGAKNGELVLDACAAPGGKTTHILEKAPQAQVIALDIEENRLKRVR 245
Query: 173 ENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVV 232
ENL RL A +I D SK + L D+ FDRIL D PC+ +GV+
Sbjct: 246 ENLARLGQTAKVICGDASKPQ-EWLEPDV--------------MFDRILLDAPCSATGVI 290
Query: 233 RRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSK 292
RR+PDI WLR++ DI +L++ KIL+ LW+ LKP G LL+ TCS+ EE+E+Q F
Sbjct: 291 RRHPDIKWLRKEQDIAELAELQSKILHALWQRLKPNGVLLYATCSILPEENEQQINRFVA 350
Query: 293 NHKDS--IRLNSPG------QLLPTVNKKQDYDGFFYS 322
D+ + ++ G Q P +++ DGFFY+
Sbjct: 351 QQTDAKLVEMDFNGEKTAMKQFFP---QEKGGDGFFYA 385
>gi|387872968|ref|YP_005804355.1| ribosomal RNA small subunit methyltransferase B [Erwinia pyrifoliae
DSM 12163]
gi|283480068|emb|CAY75984.1| Ribosomal RNA small subunit methyltransferase B [Erwinia pyrifoliae
DSM 12163]
Length = 456
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 120/336 (35%), Positives = 192/336 (57%), Gaps = 32/336 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + N + + +P W + ++K +P QW+ I+ +++P
Sbjct: 144 LINGVLRQFQRQQDELMQQ--MNDGDQQYLHPKWLLERLKRAWP--VQWQQIVAANNQRP 199
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLE--TTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N++ + ++ LL++SG + T A++L P ++ ++P F G+ ++QD
Sbjct: 200 PMWLRVNRQHHSRDTWLALLEESGKQAFTHPRHSDALRLELPCAVHQLPGFDQGWVTVQD 259
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LL R G +LD C+APGGKT H+LE A K+++VD + RL ISENL+R
Sbjct: 260 ASAQGCVALLAPRDGEQILDLCAAPGGKTTHILEAAPQAKVLAVDVDAQRLARISENLQR 319
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
LNL A + L D + ++ FDRIL D PC+ +GV+RR+PD
Sbjct: 320 LNLHAEVKLGD----------------GRTPAAWCGDRLFDRILLDAPCSATGVIRRHPD 363
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR DI +L+ +IL+ +W LK GG LL+ TCS+ EE+ Q F + H ++
Sbjct: 364 IKWLRRDRDIAELAALQQQILDAVWPYLKSGGTLLYATCSVLPEENHLQISQFLQRHANA 423
Query: 298 I-----RLNSPG-QLLPTVNKKQDYDGFFYSLFQKR 327
+ L PG Q+ P V+ DGF+Y+ K+
Sbjct: 424 VLVETGDLTQPGIQVFPQVDGG---DGFYYAKLVKK 456
>gi|442609884|ref|ZP_21024614.1| Ribosomal RNA small subunit methyltransferase B [Pseudoalteromonas
luteoviolacea B = ATCC 29581]
gi|441748604|emb|CCQ10676.1| Ribosomal RNA small subunit methyltransferase B [Pseudoalteromonas
luteoviolacea B = ATCC 29581]
Length = 428
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 131/334 (39%), Positives = 193/334 (57%), Gaps = 37/334 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INAILR F R++ + + K I +N+P W++ ++ YP QW++IL +
Sbjct: 114 LINAILRNFQRQQASL-EEKANAIPVCRYNHPSWFLKAIETGYPQ--QWESILAANQTQA 170
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL---AIKLHTPISISKIPKFFNGFCSIQ 117
P+ LR+NQR T+ Y+KLL G+ T + P I L + + K+P F G S+Q
Sbjct: 171 PMWLRVNQRHHTVEQYSKLLNAEGI-THQLEPRFKDGILLANAVDVDKLPGFAEGASSVQ 229
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKR 177
DAAAQLAA LL+ + +LDAC+APGGKTCHLLE+AD + ++D + +RL + ENL R
Sbjct: 230 DAAAQLAAQLLEPQHNERILDACAAPGGKTCHLLELADCDVTALDFDPTRLTRVEENLSR 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L A +I D S+ +++ + FDRIL D+PC+ +GV+RR+PD
Sbjct: 290 LGLSAKVIQGDASQPE----------------QWWDQQQFDRILLDVPCSATGVIRRHPD 333
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI++L+ KIL N+W +LKPGG L++ TCS+ +E+ Q F +D+
Sbjct: 334 IKWLRRASDIEELALLQAKILRNIWPLLKPGGTLIYATCSVLPQENHVQIQRFLTEFEDA 393
Query: 298 I--------RLNSPG-QLLPTVNKKQDYDGFFYS 322
PG QLLP + DGF+Y+
Sbjct: 394 QLSLLHEHDSYEKPGLQLLPGLT-----DGFYYA 422
>gi|120552984|ref|YP_957335.1| sun protein [Marinobacter aquaeolei VT8]
gi|120322833|gb|ABM17148.1| 16S rRNA m(5)C-967 methyltransferase [Marinobacter aquaeolei VT8]
Length = 433
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 114/340 (33%), Positives = 188/340 (55%), Gaps = 40/340 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++N +LR R+ K +++P W + +++ +P + W+ IL+ +++
Sbjct: 117 LVNGVLRAAEREGAPEPKDD-----SGRFSHPAWMVEKLRHNWPGY--WQTILEANNQQA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLET--TIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+TLR+N + Y KLL ++G+E T P I+L P+ + ++P F +G S+QD
Sbjct: 170 PMTLRVNALRFKRDEYLKLLSEAGIEAHATRFAPNGIQLERPVPVDRLPWFEDGAASVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADI--KLISVDNNLSRLNMISENLK 176
AAQL LLD++ G VLDAC+APGGKTC +LE +++++D + RL + ENL
Sbjct: 230 EAAQLCTTLLDLQPGQRVLDACAAPGGKTCAILEACGALDEVVAIDESAERLPRVQENLD 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL+L ATL +D + I+ ++ FDRIL D+PC+ +GV+RR+P
Sbjct: 290 RLDLHATLTQADAADID----------------SWWDGTPFDRILLDVPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI LRR++DI L+ +L +W +LKPGG+L++ TCS++ +E+ F K
Sbjct: 334 DIKLLRRESDIVPLASIQLGLLEAMWSILKPGGRLVYATCSVFPQENHRIIQRFLKQQNQ 393
Query: 297 SI----------RLNSPGQLLPTVNKKQDYDGFFYSLFQK 326
+ +N+ QL P + +DGFFY++ +K
Sbjct: 394 ATLKCIEADWGRDMNTGRQLFPDPDS---HDGFFYAVLEK 430
>gi|422017025|ref|ZP_16363598.1| 16S rRNA methyltransferase B [Providencia burhodogranariea DSM
19968]
gi|414091194|gb|EKT52885.1| 16S rRNA methyltransferase B [Providencia burhodogranariea DSM
19968]
Length = 428
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 114/325 (35%), Positives = 186/325 (57%), Gaps = 23/325 (7%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR F R++ ++ + + N S + +P W + +++ YP+ +WK I++ +++P
Sbjct: 117 LINGVLRSFQRQQEQLEERNINN--NSQYLHPTWLLKRLQNAYPD--EWKAIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTI--IGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR N + + Y +LL++ G+ + + P AI L P S++K+P F G+ ++QD
Sbjct: 173 PMWLRANSQHNSASQYQQLLEEIGITSQLHPTHPSAICLSEPTSVTKLPGFEQGWSTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
+AQ A LL+ R +LD C+APGGKT H+LE+A +++VD + +RL + ENL R
Sbjct: 233 VSAQGCAELLEPRDNENILDLCAAPGGKTTHILELAPKANVLAVDIDENRLKRVKENLSR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L AT+I D +K + + FDRIL D PC+ +GV+RR+PD
Sbjct: 293 LQQHATVIQGDGTKPE----------------EWAHGQQFDRILLDAPCSATGVIRRHPD 336
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI +L++ +IL ++W LK GG L++ TCS+ EE+ Q F H D+
Sbjct: 337 IKWLRRDSDINELTELQSQILESVWPYLKIGGTLVYATCSVMPEENSLQIQKFLAKHSDA 396
Query: 298 IRLNSPGQLLPTVNKKQDYDGFFYS 322
+ + L + DGFFY+
Sbjct: 397 VLNDGTTAGLQILPNTTGGDGFFYA 421
>gi|423126058|ref|ZP_17113737.1| ribosomal RNA small subunit methyltransferase B [Klebsiella oxytoca
10-5250]
gi|376397630|gb|EHT10260.1| ribosomal RNA small subunit methyltransferase B [Klebsiella oxytoca
10-5250]
Length = 455
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 115/333 (34%), Positives = 198/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ ++ E + +P W + +++ YP QW++I++ +++P
Sbjct: 143 LINGVLRQFQRQQEELLAE--FSRSEIRFLHPSWLLKRLQKAYPA--QWESIVEANNQRP 198
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLE--TTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ +LL+ +G++ T P A++L TP+ + +P F G+ ++QD
Sbjct: 199 PMWLRVNRAHHSRDSWLELLEAAGMKGFTHPAYPDAVRLETPVPVHALPGFEAGWVTVQD 258
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LD ++ +LD C+APGGKT H+LE A + ++++VD + RL+ + +NLKR
Sbjct: 259 ASAQGCMTFLDPQNDEQILDLCAAPGGKTTHILEAAPEAQVLAVDVDEQRLSRVYDNLKR 318
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 319 LGMKATV------------------KQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRH 360
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ +Q F +
Sbjct: 361 PDIKWLRRDRDIAELAQLQAEILDAVWPHLKSGGTLVYATCSVLPEENSQQIKAFLQRTA 420
Query: 296 DSIRLNS-----PGQL-LPTVNKKQDYDGFFYS 322
D++ + PGQ LP + DGFFY+
Sbjct: 421 DAVLSETGDADLPGQQNLPGAEQG---DGFFYA 450
>gi|399908755|ref|ZP_10777307.1| Sun protein [Halomonas sp. KM-1]
Length = 449
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 119/345 (34%), Positives = 190/345 (55%), Gaps = 42/345 (12%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++N LR R+ + ++++ +P W + ++ +P+ W+ I + ++
Sbjct: 128 VLNGCLRRLTRESAAL-QAEVDQDPAVALLHPRWLLKALREDWPD--DWRAIAEANNQPG 184
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTII--GPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LRIN+R+ +Y L +SG++ + P + L P + +P F G S+QD
Sbjct: 185 PMALRINRRRGDREAYLARLVESGIDARLCTHSPDGLVLEKPCDVQALPGFTEGDVSVQD 244
Query: 119 AAAQLAA----PLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISEN 174
AAQLAA P L R G VLDAC APGGKT HLLE+ DI+L+++D++ RL + +
Sbjct: 245 EAAQLAAELLGPALAPRPGGRVLDACCAPGGKTAHLLELFDIELLALDSDAVRLARVEDT 304
Query: 175 LKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRR 234
L+RL L ATL+ +D + + ++ FD IL D PC+G+GV+RR
Sbjct: 305 LERLGLSATLVHADATGRD-----------------WWDGTPFDAILLDAPCSGTGVIRR 347
Query: 235 NPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH 294
+PDI LRR +DI KL++ ++L+NLW +L+PGG LL+ TCS+ EE++EQ F +
Sbjct: 348 HPDIKRLRRASDIAKLAELQTRLLDNLWPLLRPGGSLLYATCSVLREENDEQIRAFLERT 407
Query: 295 KDSIRLNSPG------------QLLPTVNKKQDYDGFFYSLFQKR 327
D + + +P QLLP + +DGFFY+ +K+
Sbjct: 408 PD-VTVTTPAEVSWGRAVGAGRQLLP---EPDSHDGFFYARLRKQ 448
>gi|375003269|ref|ZP_09727608.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Infantis str. SARB27]
gi|353074184|gb|EHB39945.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Infantis str. SARB27]
Length = 429
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 112/332 (33%), Positives = 195/332 (58%), Gaps = 34/332 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + ++++ +P W + +++ YP QW+ I++ +++P
Sbjct: 117 LINGVLRQFQRQQETLLNE--FATSDAHFLHPGWLVKRLQNAYPT--QWQRIIEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T + LL+ +G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ A L ++G ++LD C+APGGKT H+LE+A + +++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPESDVLAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LKPGG L++ TCS+ EE+ +Q F +
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKAFLQRTP 394
Query: 296 DSI-----RLNSPGQLLPTVNKKQDYDGFFYS 322
D+ + PGQ + ++ DGFFY+
Sbjct: 395 DAALSETGTPDQPGQQ--NLPGGEEGDGFFYA 424
>gi|300721396|ref|YP_003710667.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Xenorhabdus
nematophila ATCC 19061]
gi|297627884|emb|CBJ88430.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Xenorhabdus
nematophila ATCC 19061]
Length = 437
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 122/333 (36%), Positives = 188/333 (56%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + +I++ +P W +++ +YP W+ I+D ++KP
Sbjct: 117 LINGVLRQFQRQQQELVERSNKHINQHL--HPKWLQERIQKSYPQ--NWQTIIDANNQKP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+NQ T Y LL+ + +E + P AI+L P + +P F G+ +IQD
Sbjct: 173 PMWLRVNQLHHTANEYLSLLENANIEAELDTKHPNAIRLLNPCPVHSLPGFNQGWVTIQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
+AQ A LL +G ++LD C+APGGKT H+LEIA K++++D + RL + ENL+R
Sbjct: 233 RSAQGCAELLTPCNGEFILDLCAAPGGKTTHILEIAPKSKVLAIDIDEQRLKRVKENLQR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
LNL A + K + R + + FDRIL D PC+ +GV+RR+
Sbjct: 293 LNLHAVV------------------KTGDGRLPHEWAAGEQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L +IL+ +W LK G L++ TCS+ +E+ EQ F K H
Sbjct: 335 PDIKWLRRNEDIDQLVTLQSEILDAIWPYLKKNGTLVYATCSILPQENSEQIKAFLKRHT 394
Query: 296 DSI-----RLNSPG-QLLPTVNKKQDYDGFFYS 322
D++ L PG Q++P V + DGFFY+
Sbjct: 395 DAVLSETGSLEKPGTQIIPEV---EGGDGFFYA 424
>gi|388455534|ref|ZP_10137829.1| 16S rRNA methyltransferase B [Fluoribacter dumoffii Tex-KL]
Length = 428
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 120/342 (35%), Positives = 184/342 (53%), Gaps = 36/342 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR F R+ EI + ++ + + P W +N+++ +P W+ I ++P
Sbjct: 108 LVNAVLRNFCRQHEEILQ-RLNQDPQFVYGQPQWLVNRLQKNWPR--DWQAIAHANDERP 164
Query: 61 PLTLRINQRKTTLISYNKLLKKSGL--ETTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N +K +L Y +LK G+ E + P I L TP + ++P F G+ S+QD
Sbjct: 165 PMVLRVNIQKNSLAEYLNILKAQGIAAEAHPVAPEGIILATPCDVHQLPGFAEGWVSVQD 224
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQLAA LL ++ G+ +LDAC APGGKTCH+LE I++D + RL + +NL
Sbjct: 225 GAAQLAASLLSLKPGLRLLDACCAPGGKTCHILEQEPNLATCIALDVDERRLQRVQDNLN 284
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L ATL D ++ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 285 RLGLHATLKQGDALTPSV----------------WWDGQPFDRILLDAPCSATGVIRRHS 328
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI LR +I K+ ++L LW +L GG L++ TCS+ EE+E+Q F NH D
Sbjct: 329 DIKLLRNDEEIDKIIHIQQEMLECLWALLAKGGLLVYATCSVMSEENEQQIAHFVANHPD 388
Query: 297 SIRLNSP----------GQLLPTVNKKQDYDGFFYSLFQKRK 328
+ P Q+LP +Q DGFFY++ K +
Sbjct: 389 CTIIKEPWAWGRATEHGQQILPG---EQSMDGFFYAVLLKDR 427
>gi|160873155|ref|YP_001552471.1| sun protein [Shewanella baltica OS195]
gi|378706391|ref|YP_005271285.1| sun protein [Shewanella baltica OS678]
gi|418022970|ref|ZP_12661956.1| sun protein [Shewanella baltica OS625]
gi|160858677|gb|ABX47211.1| sun protein [Shewanella baltica OS195]
gi|315265380|gb|ADT92233.1| sun protein [Shewanella baltica OS678]
gi|353537972|gb|EHC07528.1| sun protein [Shewanella baltica OS625]
Length = 428
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 116/302 (38%), Positives = 177/302 (58%), Gaps = 26/302 (8%)
Query: 29 WNYPIWWINQVKITYPNFFQWKNILDVGHKKPPLTLRINQRKTTLISYNKLLKKSGLETT 88
+N P W I ++K YP QW++I+ H++PP+ LR N+ + Y L + +E +
Sbjct: 138 YNTPAWLIKRLKEAYPE--QWQDIIQQSHERPPMWLRNNRLFQSRSEYLATLAELEIEAS 195
Query: 89 IIGPL-AIKLHTPISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKT 147
AI L P ++ +P+F G S+QD AAQ AA LL ++ +LDAC+APGGK+
Sbjct: 196 EGSSADAILLAHPKDVATLPRFHEGAASVQDGAAQWAATLLTPQANELILDACAAPGGKS 255
Query: 148 CHLLEIA-DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTN 206
CHLLE+ IKL++VD + RL + +NL RL+LKA LI D + I+
Sbjct: 256 CHLLELEPSIKLVAVDFDAKRLERVQQNLDRLSLKAELIHGDAANID------------- 302
Query: 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLK 266
+++ FDRIL D PC+ +GV+RR+PDI WLR+ +DI++L++ +IL++ WK LK
Sbjct: 303 ---SWWQGGQFDRILLDAPCSATGVIRRHPDIKWLRKNHDIEELAELQQQILDHCWKWLK 359
Query: 267 PGGKLLFVTCSLWFEESEEQAIIFSKNHKDS-----IRLNSPGQLLPTVNKKQD-YDGFF 320
PGG LL+ TCS+ +E+ +Q F + D+ + NSP + + QD DGF+
Sbjct: 360 PGGTLLYATCSILPQENRDQISAFLERTADAKLDTLSQQNSPQDIGWQITPGQDNMDGFY 419
Query: 321 YS 322
Y+
Sbjct: 420 YA 421
>gi|395231847|ref|ZP_10410124.1| 16S rRNA methyltransferase [Citrobacter sp. A1]
gi|424734278|ref|ZP_18162820.1| methionyl-trna formyltransferase [Citrobacter sp. L17]
gi|394714310|gb|EJF20289.1| 16S rRNA methyltransferase [Citrobacter sp. A1]
gi|422892092|gb|EKU31969.1| methionyl-trna formyltransferase [Citrobacter sp. L17]
Length = 429
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 119/333 (35%), Positives = 189/333 (56%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + + + +P W + ++K YP QW+ IL+ +++P
Sbjct: 117 LINGVLRQFQRRQDELLAE--FAQSDLRFLHPSWLVKRIKSAYPQ--QWEAILEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T ++ LL +GL P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRNHHTRDAWIDLLTAAGLTGFPHPDYPDAVRLETPAPVHALPGFDEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L + G +LD C APGGKT H+LE+A +++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCVKYLLPKDGEQILDLCCAPGGKTTHILEVAPQANVMAVDVDEKRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPQQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +ILN W LKPGG L++ TCS+ EE+++Q F
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILNATWLHLKPGGTLVYATCSILPEENQQQITAFLARTP 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D++ + PG Q LP +D DGFFY+
Sbjct: 395 DAVLSETGTPEKPGRQNLPGA---EDGDGFFYA 424
>gi|168823234|ref|ZP_02835234.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|205354964|ref|YP_002228765.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|207858650|ref|YP_002245301.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|375125863|ref|ZP_09771027.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Gallinarum str. SG9]
gi|421356757|ref|ZP_15807076.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 622731-39]
gi|421365474|ref|ZP_15815695.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639016-6]
gi|421365561|ref|ZP_15815778.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 640631]
gi|421374528|ref|ZP_15824658.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-0424]
gi|421374608|ref|ZP_15824735.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-6]
gi|421383202|ref|ZP_15833242.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 485549-17]
gi|421387343|ref|ZP_15837345.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-22]
gi|421388561|ref|ZP_15838550.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-70]
gi|421392760|ref|ZP_15842710.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-26]
gi|421400248|ref|ZP_15850137.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-37]
gi|421403429|ref|ZP_15853277.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-46]
gi|421408081|ref|ZP_15857884.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-50]
gi|421412278|ref|ZP_15862036.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-1427]
gi|421418309|ref|ZP_15868013.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-2659]
gi|421419691|ref|ZP_15869379.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 78-1757]
gi|421428046|ref|ZP_15877662.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22510-1]
gi|421432545|ref|ZP_15882115.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 8b-1]
gi|421437141|ref|ZP_15886664.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648905 5-18]
gi|421441584|ref|ZP_15891051.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 6-18]
gi|421445490|ref|ZP_15894915.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-3079]
gi|421450096|ref|ZP_15899474.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 58-6482]
gi|436592462|ref|ZP_20512220.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22704]
gi|436793002|ref|ZP_20521622.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE30663]
gi|436796409|ref|ZP_20522834.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS44]
gi|436810102|ref|ZP_20529319.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1882]
gi|436812095|ref|ZP_20530752.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1884]
gi|436846464|ref|ZP_20539301.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1594]
gi|436848345|ref|ZP_20540052.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1566]
gi|436854763|ref|ZP_20544227.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1580]
gi|436861649|ref|ZP_20548664.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1543]
gi|436874394|ref|ZP_20556947.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1441]
gi|436883847|ref|ZP_20562091.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1810]
gi|436890479|ref|ZP_20565808.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1558]
gi|436892218|ref|ZP_20566646.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1018]
gi|436903382|ref|ZP_20573804.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1010]
gi|436907861|ref|ZP_20575617.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1729]
gi|436921646|ref|ZP_20583917.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0895]
gi|436929883|ref|ZP_20588452.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0899]
gi|436931789|ref|ZP_20589230.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1457]
gi|436939625|ref|ZP_20593905.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1747]
gi|436949829|ref|ZP_20599603.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0968]
gi|436965072|ref|ZP_20606467.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1444]
gi|436975468|ref|ZP_20611605.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1445]
gi|436988811|ref|ZP_20616320.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1565]
gi|437011584|ref|ZP_20624552.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1808]
gi|437019118|ref|ZP_20626989.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1811]
gi|437034169|ref|ZP_20632909.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0956]
gi|437046800|ref|ZP_20638593.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1455]
gi|437052920|ref|ZP_20642201.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1575]
gi|437055213|ref|ZP_20643419.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1725]
gi|437062838|ref|ZP_20647726.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1745]
gi|437077273|ref|ZP_20655429.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1791]
gi|437085885|ref|ZP_20660309.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1795]
gi|437096194|ref|ZP_20664812.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 576709]
gi|437102111|ref|ZP_20666428.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 635290-58]
gi|437121912|ref|ZP_20671998.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-16]
gi|437130190|ref|ZP_20676484.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-19]
gi|437138297|ref|ZP_20680907.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-2]
gi|437147454|ref|ZP_20686844.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-9]
gi|437156075|ref|ZP_20692033.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629163]
gi|437160448|ref|ZP_20694633.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE15-1]
gi|437164664|ref|ZP_20697246.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_N202]
gi|437179347|ref|ZP_20705326.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_56-3991]
gi|437180964|ref|ZP_20706283.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_76-3618]
gi|437206889|ref|ZP_20712583.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13183-1]
gi|437263674|ref|ZP_20719620.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_81-2490]
gi|437268880|ref|ZP_20722194.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL909]
gi|437279821|ref|ZP_20727807.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL913]
gi|437289696|ref|ZP_20731129.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_69-4941]
gi|437305337|ref|ZP_20734212.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 638970-15]
gi|437324949|ref|ZP_20739968.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 17927]
gi|437343418|ref|ZP_20745782.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS4]
gi|437384628|ref|ZP_20750612.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22558]
gi|437412487|ref|ZP_20753377.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 22-17]
gi|437442480|ref|ZP_20757866.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 40-18]
gi|437462136|ref|ZP_20762529.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 1-1]
gi|437471821|ref|ZP_20765326.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 4-1]
gi|437496227|ref|ZP_20773167.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642046 4-7]
gi|437501620|ref|ZP_20774376.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648898 4-5]
gi|437544068|ref|ZP_20782786.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648899 3-17]
gi|437560370|ref|ZP_20786015.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648900 1-16]
gi|437574285|ref|ZP_20789690.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 1-17]
gi|437585629|ref|ZP_20792986.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 39-2]
gi|437599168|ref|ZP_20796815.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648902 6-8]
gi|437618307|ref|ZP_20803108.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648903 1-6]
gi|437635200|ref|ZP_20807096.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648904 3-6]
gi|437664880|ref|ZP_20814455.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 653049 13-19]
gi|437686063|ref|ZP_20819277.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 8-1]
gi|437700768|ref|ZP_20823940.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 9-7]
gi|437717808|ref|ZP_20828406.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 42-20]
gi|437737175|ref|ZP_20832907.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 16-16]
gi|437796276|ref|ZP_20837578.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 76-2651]
gi|437803235|ref|ZP_20838524.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 33944]
gi|437917377|ref|ZP_20850553.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 6.0562-1]
gi|438094311|ref|ZP_20861646.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 81-2625]
gi|438104927|ref|ZP_20866082.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 62-1976]
gi|438113844|ref|ZP_20869783.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 53-407]
gi|445135321|ref|ZP_21383160.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9184]
gi|445174210|ref|ZP_21396995.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE8a]
gi|445181043|ref|ZP_21398227.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 20037]
gi|445232941|ref|ZP_21406220.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE10]
gi|445250378|ref|ZP_21408809.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 436]
gi|445336417|ref|ZP_21415708.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 18569]
gi|445348657|ref|ZP_21419686.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13-1]
gi|445364223|ref|ZP_21424887.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. PT23]
gi|224493261|sp|B5R1E5.1|RSMB_SALEP RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|224493262|sp|B5RH47.1|RSMB_SALG2 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|205274745|emb|CAR39801.1| sun protein [Salmonella enterica subsp. enterica serovar Gallinarum
str. 287/91]
gi|205340499|gb|EDZ27263.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|206710453|emb|CAR34811.1| sun protein [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|326630113|gb|EGE36456.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Gallinarum str. SG9]
gi|395980541|gb|EJH89765.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639016-6]
gi|395993171|gb|EJI02271.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 622731-39]
gi|395993263|gb|EJI02359.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 640631]
gi|395994046|gb|EJI03128.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-0424]
gi|395995962|gb|EJI05019.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 485549-17]
gi|396007728|gb|EJI16672.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-6]
gi|396009569|gb|EJI18494.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-22]
gi|396020060|gb|EJI28909.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-70]
gi|396020082|gb|EJI28930.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-26]
gi|396024170|gb|EJI32958.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-37]
gi|396028928|gb|EJI37680.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-46]
gi|396028993|gb|EJI37743.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-50]
gi|396038533|gb|EJI47169.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-2659]
gi|396043170|gb|EJI51783.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-1427]
gi|396047999|gb|EJI56565.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 78-1757]
gi|396049539|gb|EJI58078.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 8b-1]
gi|396050076|gb|EJI58609.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22510-1]
gi|396050753|gb|EJI59274.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648905 5-18]
gi|396063458|gb|EJI71850.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 6-18]
gi|396065083|gb|EJI73462.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-3079]
gi|396067915|gb|EJI76268.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 58-6482]
gi|434955824|gb|ELL49623.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE30663]
gi|434961541|gb|ELL54822.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS44]
gi|434965787|gb|ELL58705.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1882]
gi|434976582|gb|ELL68806.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1884]
gi|434977775|gb|ELL69867.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1594]
gi|434978407|gb|ELL70441.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22704]
gi|434990716|gb|ELL82253.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1566]
gi|434993780|gb|ELL85178.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1580]
gi|434997008|gb|ELL88290.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1441]
gi|435000437|gb|ELL91584.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1543]
gi|435001206|gb|ELL92326.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1810]
gi|435006517|gb|ELL97405.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1558]
gi|435018781|gb|ELM09238.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1010]
gi|435021394|gb|ELM11768.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1018]
gi|435025055|gb|ELM15236.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0895]
gi|435030726|gb|ELM20733.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1729]
gi|435032912|gb|ELM22830.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0899]
gi|435044616|gb|ELM34292.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1457]
gi|435047403|gb|ELM36991.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1444]
gi|435047464|gb|ELM37046.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1747]
gi|435049699|gb|ELM39215.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1445]
gi|435053028|gb|ELM42501.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0968]
gi|435064695|gb|ELM53816.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1808]
gi|435071968|gb|ELM60902.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1565]
gi|435076254|gb|ELM65040.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0956]
gi|435077206|gb|ELM65964.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1455]
gi|435080593|gb|ELM69269.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1811]
gi|435089818|gb|ELM78232.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1575]
gi|435098984|gb|ELM87208.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1725]
gi|435103562|gb|ELM91642.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1791]
gi|435103614|gb|ELM91691.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1745]
gi|435104139|gb|ELM92210.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1795]
gi|435108145|gb|ELM96113.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 576709]
gi|435123136|gb|ELN10633.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 635290-58]
gi|435124380|gb|ELN11839.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-16]
gi|435125888|gb|ELN13315.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-19]
gi|435133294|gb|ELN20462.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-2]
gi|435133889|gb|ELN21035.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-9]
gi|435137332|gb|ELN24398.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629163]
gi|435147262|gb|ELN34035.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE15-1]
gi|435151134|gb|ELN37788.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_56-3991]
gi|435154762|gb|ELN41326.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_N202]
gi|435160587|gb|ELN46856.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_81-2490]
gi|435166961|gb|ELN52908.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_76-3618]
gi|435170789|gb|ELN56520.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL913]
gi|435173464|gb|ELN58973.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL909]
gi|435182285|gb|ELN67311.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_69-4941]
gi|435187392|gb|ELN72159.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 638970-15]
gi|435192145|gb|ELN76696.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS4]
gi|435193200|gb|ELN77682.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 17927]
gi|435201729|gb|ELN85614.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22558]
gi|435203299|gb|ELN87060.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 22-17]
gi|435206292|gb|ELN89833.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13183-1]
gi|435211439|gb|ELN94553.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 40-18]
gi|435219627|gb|ELO01972.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 1-1]
gi|435226175|gb|ELO07760.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642046 4-7]
gi|435226746|gb|ELO08302.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 4-1]
gi|435234477|gb|ELO15334.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648899 3-17]
gi|435238493|gb|ELO19126.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648898 4-5]
gi|435238514|gb|ELO19146.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648900 1-16]
gi|435245934|gb|ELO25961.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 1-17]
gi|435259395|gb|ELO38620.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648903 1-6]
gi|435261339|gb|ELO40495.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 39-2]
gi|435263562|gb|ELO42607.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648902 6-8]
gi|435265430|gb|ELO44283.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 653049 13-19]
gi|435266838|gb|ELO45566.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 8-1]
gi|435273496|gb|ELO51763.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 9-7]
gi|435280679|gb|ELO58374.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648904 3-6]
gi|435284153|gb|ELO61656.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 42-20]
gi|435284884|gb|ELO62302.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 16-16]
gi|435290679|gb|ELO67584.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 76-2651]
gi|435303500|gb|ELO79374.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 33944]
gi|435314652|gb|ELO88046.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 81-2625]
gi|435314697|gb|ELO88088.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 6.0562-1]
gi|435321884|gb|ELO94232.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 62-1976]
gi|435329260|gb|ELP00706.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 53-407]
gi|444845833|gb|ELX71017.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9184]
gi|444859294|gb|ELX84245.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE8a]
gi|444861825|gb|ELX86696.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE10]
gi|444871866|gb|ELX96256.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 20037]
gi|444873961|gb|ELX98231.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 18569]
gi|444876037|gb|ELY00226.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13-1]
gi|444883295|gb|ELY07187.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. PT23]
gi|444889739|gb|ELY13142.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 436]
Length = 429
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 112/332 (33%), Positives = 195/332 (58%), Gaps = 34/332 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQETLLNE--FATSDARFLHPGWLVKRLQNAYPT--QWQHIIEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T + LL+ +G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ A L ++G ++LD C+APGGKT H+LE+A + +++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVLAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LKPGG L++ TCS+ EE+ +Q F +
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKTFLQRTP 394
Query: 296 DSI-----RLNSPGQLLPTVNKKQDYDGFFYS 322
D+ + PGQ + ++ DGFFY+
Sbjct: 395 DAALSETGTPDQPGQQ--NLPGGEEGDGFFYA 424
>gi|168245235|ref|ZP_02670167.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
gi|168468035|ref|ZP_02701872.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|194447684|ref|YP_002047433.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|200388990|ref|ZP_03215602.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|386593085|ref|YP_006089485.1| Ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Heidelberg str. B182]
gi|418760133|ref|ZP_13316294.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35185]
gi|418767911|ref|ZP_13323967.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35199]
gi|418768863|ref|ZP_13324905.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21539]
gi|418782104|ref|ZP_13337971.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35188]
gi|418784162|ref|ZP_13340000.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21559]
gi|418802084|ref|ZP_13357715.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35202]
gi|419730652|ref|ZP_14257587.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41579]
gi|419734817|ref|ZP_14261701.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41563]
gi|419741486|ref|ZP_14268178.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41573]
gi|419743267|ref|ZP_14269932.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41566]
gi|419750258|ref|ZP_14276722.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41565]
gi|419787946|ref|ZP_14313647.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. Levine 1]
gi|419794886|ref|ZP_14320492.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. Levine 15]
gi|421571760|ref|ZP_16017428.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00322]
gi|421575475|ref|ZP_16021088.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00325]
gi|421578888|ref|ZP_16024458.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00326]
gi|421586045|ref|ZP_16031528.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00328]
gi|224493263|sp|B4TJX9.1|RSMB_SALHS RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|194405988|gb|ACF66207.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL476]
gi|195628892|gb|EDX48302.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|199606088|gb|EDZ04633.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|205336021|gb|EDZ22785.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
gi|381291396|gb|EIC32638.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41573]
gi|381293042|gb|EIC34214.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41579]
gi|381295638|gb|EIC36747.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41563]
gi|381307326|gb|EIC48184.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41565]
gi|381311752|gb|EIC52562.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41566]
gi|383800126|gb|AFH47208.1| Ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Heidelberg str. B182]
gi|392613594|gb|EIW96049.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. Levine 15]
gi|392618644|gb|EIX01039.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. Levine 1]
gi|392732701|gb|EIZ89908.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35199]
gi|392741484|gb|EIZ98584.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21539]
gi|392743802|gb|EJA00868.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35185]
gi|392744702|gb|EJA01746.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35188]
gi|392754506|gb|EJA11422.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21559]
gi|392778587|gb|EJA35259.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35202]
gi|402519315|gb|EJW26677.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00322]
gi|402522515|gb|EJW29839.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00325]
gi|402522859|gb|EJW30178.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00326]
gi|402528770|gb|EJW36019.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00328]
Length = 429
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 112/332 (33%), Positives = 195/332 (58%), Gaps = 34/332 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQETLLNE--FATSDARFLHPGWLVKRLQNAYPT--QWQHIIEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T + LL+ +G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ A L ++G ++LD C+APGGKT H+LE+A + +++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVLAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LKPGG L++ TCS+ EE+ +Q F +
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKTFLQRTP 394
Query: 296 DSI-----RLNSPGQLLPTVNKKQDYDGFFYS 322
D+ + PGQ + ++ DGFFY+
Sbjct: 395 DAALSETGTPDQPGQQ--NLPGGEEGDGFFYA 424
>gi|33152966|ref|NP_874319.1| Fmu protein [Haemophilus ducreyi 35000HP]
gi|46396801|sp|Q7VKC4.1|RSMB_HAEDU RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|33149191|gb|AAP96708.1| SUN protein [Haemophilus ducreyi 35000HP]
Length = 435
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 128/341 (37%), Positives = 188/341 (55%), Gaps = 41/341 (12%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
+ N +LR FLR++ I + +W +P W +N +K YPN W+ I+D ++
Sbjct: 118 LTNGVLRRFLREQQTILAKV-----DKHWQTLHPEWLVNMLKQVYPN---WREIMDANNQ 169
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLETT----IIGPLAIKLHTPISISKIPKFFNGFC 114
+PP+ +R+N + T Y+ LL ++TT + AI+L P+S+ K+P F G+
Sbjct: 170 RPPMWIRVNTQHCTPQDYSALLGDLAVKTTNSSACLPSSAIQLVNPLSVDKLPYFSRGWA 229
Query: 115 SIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISE 173
++QD AQ +A LL ++G +LDAC+APGGKT H+LE A K+I++D SRL + E
Sbjct: 230 TVQDCHAQWSATLLAAKNGEMILDACAAPGGKTTHILEQAPQAKVIALDIEESRLVRVRE 289
Query: 174 NLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVR 233
NL RL L A + D + K L D+ FDRIL D PC+ +GV+R
Sbjct: 290 NLARLGLTADVRCGDATTPT-KWLADDV--------------MFDRILLDAPCSATGVIR 334
Query: 234 RNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKN 293
R+PDI WLR+ DI +L + KIL+ LW LKP G L++ TCS+ E+ EQ I F
Sbjct: 335 RHPDIKWLRQAGDISELVELQAKILSALWHRLKPNGTLVYATCSILPAENSEQIIQFITA 394
Query: 294 HKDS--IRLNSPG------QLLPTVNKKQDYDGFFYSLFQK 326
+ D+ I ++ G Q LP N DGFFY+ +K
Sbjct: 395 NPDAELIEMDFNGEKAIMKQFLPQQNGG---DGFFYAKLRK 432
>gi|261213231|ref|ZP_05927513.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. RC341]
gi|260837505|gb|EEX64208.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. RC341]
Length = 426
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 115/335 (34%), Positives = 192/335 (57%), Gaps = 30/335 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R + E ++ + + +P W + +K +YP QW+ I++ + K
Sbjct: 113 LINAVLRNYQRDQ-ERLDTQATSHDAGRYGHPGWLLKLLKESYPQ--QWQQIVEANNSKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + T Y LL+++ + T A+ L TP + ++P F +G+ S+QD
Sbjct: 170 PMWLRVNHQHHTRAEYQALLEQADIACTPHSQAEDALCLETPCDVHQLPGFADGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQLA L ++G +LD C+APGGKT H+LE +++++D + +RL + ENL+R
Sbjct: 230 AAAQLALTYLAPKAGELILDCCAAPGGKTAHILEHTPGSQVVAIDCDETRLKRVQENLQR 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L A +I D ++++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 290 LQLNAQVICGDARYPQ----------------QWWQGEQFDRILLDAPCSATGVIRRHPD 333
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI L++ +IL+ +W+ LKPGG L++ TCS+ +E+ Q F + ++
Sbjct: 334 IKWLRRADDITALAELQREILDAMWQQLKPGGTLVYATCSITPQENCLQVKAFLERTPEA 393
Query: 298 IRLNS----PG-QLLPTVNKKQDYDGFFYSLFQKR 327
+ S PG Q+LP ++ DGF+Y++ K+
Sbjct: 394 NLVGSDPAQPGRQILP---GEEAMDGFYYAVLSKQ 425
>gi|409247120|ref|YP_006887820.1| Ribosomal RNA small subunit methyltransferase B rRNA
(cytosine-C(5)-)-methyltransferase; 16S rRNA m5C967
methyltransferase [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|320087854|emb|CBY97617.1| Ribosomal RNA small subunit methyltransferase B rRNA
(cytosine-C(5)-)-methyltransferase; 16S rRNA m5C967
methyltransferase [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
Length = 429
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 112/332 (33%), Positives = 195/332 (58%), Gaps = 34/332 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQETLLNE--FATSDARFLHPGWLVKRLQNAYPT--QWQHIIEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T + LL+ +G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ A L ++G ++LD C+APGGKT H+LE+A + +++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVLAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LKPGG L++ TCS+ EE+ +Q F +
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKTFLQRTP 394
Query: 296 DSI-----RLNSPGQLLPTVNKKQDYDGFFYS 322
D+ + PGQ + ++ DGFFY+
Sbjct: 395 DAALSETGTPDQPGQQ--NLPGGEEGDGFFYA 424
>gi|227328919|ref|ZP_03832943.1| 16S rRNA methyltransferase B [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 429
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 193/333 (57%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + + H S++ +P W + +++ YPN W+ I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELIQREA--THSSHYLHPSWLLARIERAYPN--HWQGIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T +Y LL + G+E AI+L +P ++ ++P F G+ ++QD
Sbjct: 173 PMWLRVNRLHHTREAYLNLLVQEGIEAFPHAEYSDAIRLASPCAVDQLPGFSQGWATVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LD + G +LD C+APGGKT H+LE A +++VD + +RL+ + ENL R
Sbjct: 233 ASAQGCVYWLDPQDGEQILDLCAAPGGKTTHILEAAPKSHVLAVDVDETRLSRVKENLLR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L + A + K+ + R+ + + + FDRIL D PC+ +GV+RR+
Sbjct: 293 LQMHAEV------------------KQGDGRYPDSWCEGRVFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI++L +IL+ +W LK GG +++ TCS+ +E+ +Q F H
Sbjct: 335 PDIKWLRRDRDIEELVALQKEILDAIWPYLKTGGTMVYATCSILPQENAQQVTDFLTRHA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ +++ PG Q+LP + DGFFY+
Sbjct: 395 DAKLIDTGTREMPGIQMLPHADGG---DGFFYA 424
>gi|16766697|ref|NP_462312.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|167995183|ref|ZP_02576273.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|374978046|ref|ZP_09719389.1| Ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Typhimurium str.
TN061786]
gi|378446786|ref|YP_005234418.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|378452238|ref|YP_005239598.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|378701302|ref|YP_005183260.1| 16S rRNA methyltransferase [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|378986002|ref|YP_005249158.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|378990713|ref|YP_005253877.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
gi|379702667|ref|YP_005244395.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. ST4/74]
gi|383498054|ref|YP_005398743.1| 16S rRNA methyltransferase [Salmonella enterica subsp. enterica
serovar Typhimurium str. 798]
gi|422027637|ref|ZP_16373969.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm1]
gi|422032679|ref|ZP_16378778.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm2]
gi|427554653|ref|ZP_18929271.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm8]
gi|427572290|ref|ZP_18933881.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm9]
gi|427593805|ref|ZP_18938789.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm3]
gi|427617903|ref|ZP_18943700.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm4]
gi|427641325|ref|ZP_18948554.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm6]
gi|427657665|ref|ZP_18953301.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm10]
gi|427662883|ref|ZP_18958173.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm11]
gi|427678040|ref|ZP_18963080.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm12]
gi|427800758|ref|ZP_18968460.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm5]
gi|46396986|sp|Q8ZLM5.1|RSMB_SALTY RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|16421964|gb|AAL22271.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|205327090|gb|EDZ13854.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|261248565|emb|CBG26403.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267995617|gb|ACY90502.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|301159951|emb|CBW19470.1| 16S rRNA methyltransferase [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|312914431|dbj|BAJ38405.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|321226460|gb|EFX51510.1| Ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Typhimurium str.
TN061786]
gi|323131766|gb|ADX19196.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. ST4/74]
gi|332990260|gb|AEF09243.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
gi|380464875|gb|AFD60278.1| 16S rRNA methyltransferase [Salmonella enterica subsp. enterica
serovar Typhimurium str. 798]
gi|414013918|gb|EKS97780.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm1]
gi|414015181|gb|EKS99007.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm8]
gi|414015492|gb|EKS99306.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm2]
gi|414028658|gb|EKT11835.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm9]
gi|414030036|gb|EKT13178.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm3]
gi|414032162|gb|EKT15174.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm4]
gi|414043521|gb|EKT26020.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm6]
gi|414043739|gb|EKT26223.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm10]
gi|414048734|gb|EKT30969.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm11]
gi|414056583|gb|EKT38395.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm12]
gi|414063069|gb|EKT44268.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm5]
Length = 429
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 112/332 (33%), Positives = 195/332 (58%), Gaps = 34/332 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQETLLNE--FATSDARFLHPGWLVKRLQNAYPT--QWQHIIEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T + LL+ +G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ A L ++G ++LD C+APGGKT H+LE+A + +++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVLAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LKPGG L++ TCS+ EE+ +Q F +
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKTFLQRTP 394
Query: 296 DSI-----RLNSPGQLLPTVNKKQDYDGFFYS 322
D+ + PGQ + ++ DGFFY+
Sbjct: 395 DAALSETGTPDQPGQQ--NLPGGEEGDGFFYA 424
>gi|56415328|ref|YP_152403.1| 16S rRNA methyltransferase GidB [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|197364258|ref|YP_002143895.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|81360778|sp|Q5PIT6.1|RSMB_SALPA RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|224493266|sp|B5BGV5.1|RSMB_SALPK RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|56129585|gb|AAV79091.1| sun protein [Salmonella enterica subsp. enterica serovar Paratyphi
A str. ATCC 9150]
gi|197095735|emb|CAR61305.1| sun protein [Salmonella enterica subsp. enterica serovar Paratyphi
A str. AKU_12601]
Length = 429
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 112/332 (33%), Positives = 194/332 (58%), Gaps = 34/332 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + ++ + +P W + +++ YP QW+ I++ +++P
Sbjct: 117 LINGVLRQFQRQQETLLNE--FATSDARFLHPGWLVKRLQNAYPT--QWQRIIEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T + LL+ +G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ A L ++G ++LD C+APGGKT H+LE+A + +++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVLAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LKPGG L++ TCS+ EE+ +Q F +
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILDTVWPRLKPGGTLVYATCSVLPEENRDQIKTFLQRTP 394
Query: 296 DSI-----RLNSPGQLLPTVNKKQDYDGFFYS 322
D+ + PGQ + ++ DGFFY+
Sbjct: 395 DAALSETGTPDQPGQQ--NLPGGEEGDGFFYA 424
>gi|194443414|ref|YP_002042660.1| 16S rRNA methyltransferase GidB [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|418789938|ref|ZP_13345720.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19447]
gi|418792627|ref|ZP_13348368.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19449]
gi|418800386|ref|ZP_13356044.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19567]
gi|418806611|ref|ZP_13362181.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21550]
gi|418810773|ref|ZP_13366310.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22513]
gi|418818464|ref|ZP_13373936.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21538]
gi|418823798|ref|ZP_13379199.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22425]
gi|418827007|ref|ZP_13382174.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22462]
gi|418829206|ref|ZP_13384193.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM N18486]
gi|418837898|ref|ZP_13392756.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM N1543]
gi|418841708|ref|ZP_13396525.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21554]
gi|418846624|ref|ZP_13401391.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19443]
gi|418851534|ref|ZP_13406245.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 37978]
gi|418854709|ref|ZP_13409375.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19593]
gi|418861138|ref|ZP_13415707.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19470]
gi|418865698|ref|ZP_13420171.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19536]
gi|418870618|ref|ZP_13425032.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 4176]
gi|224493264|sp|B4SUR0.1|RSMB_SALNS RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|194402077|gb|ACF62299.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Newport str. SL254]
gi|392759540|gb|EJA16391.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19447]
gi|392761211|gb|EJA18040.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19567]
gi|392767407|gb|EJA24176.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19449]
gi|392780459|gb|EJA37111.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22513]
gi|392781769|gb|EJA38407.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21550]
gi|392784634|gb|EJA41222.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22425]
gi|392785461|gb|EJA42037.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21538]
gi|392797444|gb|EJA53751.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM N1543]
gi|392802472|gb|EJA58685.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22462]
gi|392804886|gb|EJA61025.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM N18486]
gi|392808069|gb|EJA64124.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21554]
gi|392809833|gb|EJA65862.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19443]
gi|392817423|gb|EJA73337.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 37978]
gi|392823744|gb|EJA79538.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19593]
gi|392825300|gb|EJA81052.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19470]
gi|392827295|gb|EJA83005.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19536]
gi|392830205|gb|EJA85861.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 4176]
Length = 429
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 112/332 (33%), Positives = 195/332 (58%), Gaps = 34/332 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQETLLNE--FATSDARFLHPGWLVKRLQNAYPT--QWQHIIEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T + LL+ +G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ A L ++G ++LD C+APGGKT H+LE+A + +++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVLAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LKPGG L++ TCS+ EE+ +Q F +
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKAFLQRTP 394
Query: 296 DSI-----RLNSPGQLLPTVNKKQDYDGFFYS 322
D+ + PGQ + ++ DGFFY+
Sbjct: 395 DAALSETGTPDQPGQQ--NLPGGEEGDGFFYA 424
>gi|307543963|ref|YP_003896442.1| Sun protein [Halomonas elongata DSM 2581]
gi|307215987|emb|CBV41257.1| K03500 Sun protein [Halomonas elongata DSM 2581]
Length = 447
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 115/312 (36%), Positives = 170/312 (54%), Gaps = 39/312 (12%)
Query: 31 YPIWWINQVKITYPNFFQWKNILDVGHKKPPLTLRINQRKTTLISYNKLLKKSGLETTII 90
+P WW+ + +P+ W+ I D ++ P+TLR+N+R Y + L G
Sbjct: 156 HPRWWVKAFRQAWPD--DWRAICDANNQPGPMTLRVNRRHGDREMYLERLDSPGARLCPH 213
Query: 91 GPLAIKLHTPISISKIPKFFNGFCSIQDAAAQLAA----PLLDIRSGMYVLDACSAPGGK 146
P + L TP I+++P F G SIQD AAQLAA P++ R G VLDAC APGGK
Sbjct: 214 APDGLTLETPCDIAELPGFKEGHVSIQDEAAQLAAVLLGPVIAPRPGARVLDACCAPGGK 273
Query: 147 TCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTN 206
HLLE+ DI L ++D++ +RL + + L RL L A+L D ++ +
Sbjct: 274 AAHLLELFDIDLQAIDSDDARLARVEDTLARLGLSASLAHGDATERD------------- 320
Query: 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLK 266
++ FD IL D PC+GSGV+RR+PDI LRR +DI KL++ ++L+NLW +L
Sbjct: 321 ----WWDGTAFDAILLDAPCSGSGVIRRHPDIKRLRRPSDIAKLAELQARLLDNLWPLLA 376
Query: 267 PGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPG------------QLLPTVNKKQ 314
PGG LL+ TCS+ EE+ +Q F + + + +P QLLP+ +
Sbjct: 377 PGGTLLYATCSVLPEENADQVQAFLERTP-GVEVTTPNGLAWGRPAGAGRQLLPSPDS-- 433
Query: 315 DYDGFFYSLFQK 326
+DGFFY+ +K
Sbjct: 434 -HDGFFYARLRK 444
>gi|420377550|ref|ZP_14877138.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
1235-66]
gi|391295091|gb|EIQ53261.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
1235-66]
Length = 429
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 119/333 (35%), Positives = 189/333 (56%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + + + +P W + ++K YP QW+ IL+ +++P
Sbjct: 117 LINGVLRQFQRRQDELLAE--FAQSDLRFLHPSWLVKRIKAAYPQ--QWEAILEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T ++ LL ++GL P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRNHHTRDAWLDLLSEAGLTGFPHPDYPDAVRLETPTPVHALPGFDEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L G +LD C APGGKT H+LE+A +++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCVTYLLPEDGEQILDLCCAPGGKTTHILEVAPHANVMAVDVDEKRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPQQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +ILN W LKPGG L++ TCS+ EE+++Q F
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILNATWLHLKPGGTLVYATCSILPEENQQQIAAFLACTP 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D++ + PG Q LP +D DGFFY+
Sbjct: 395 DAVLSETGTPEKPGRQNLPGA---EDGDGFFYA 424
>gi|436984153|ref|ZP_20614366.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1559]
gi|435064359|gb|ELM53492.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1559]
Length = 402
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 112/332 (33%), Positives = 195/332 (58%), Gaps = 34/332 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 90 LINGVLRQFQRQQETLLNE--FATSDARFLHPGWLVKRLQNAYPT--QWQHIIEANNQRP 145
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T + LL+ +G++ P A++L TP + +P F G+ ++QD
Sbjct: 146 PMWLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQD 205
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ A L ++G ++LD C+APGGKT H+LE+A + +++VD + RL+ + +NLKR
Sbjct: 206 ASAQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVLAVDIDEQRLSRVYDNLKR 265
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 266 LGMKATV------------------KQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRH 307
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LKPGG L++ TCS+ EE+ +Q F +
Sbjct: 308 PDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKTFLQRTP 367
Query: 296 DSI-----RLNSPGQLLPTVNKKQDYDGFFYS 322
D+ + PGQ + ++ DGFFY+
Sbjct: 368 DAALSETGTPDQPGQQ--NLPGGEEGDGFFYA 397
>gi|403060219|ref|YP_006648436.1| sun protein [Pectobacterium carotovorum subsp. carotovorum PCC21]
gi|402807545|gb|AFR05183.1| sun protein [Pectobacterium carotovorum subsp. carotovorum PCC21]
Length = 429
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 115/333 (34%), Positives = 190/333 (57%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + + H S++ +P W + +++ YP+ W+NI++ + +P
Sbjct: 117 LINGVLRQFQRQQEELIQREA--THSSHYLHPSWLLARIERAYPH--HWQNIVEANNLRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T +Y LL++ G+E AI+L P ++ ++P F G+ ++QD
Sbjct: 173 PMWLRVNRLHHTREAYLNLLEQEGIEAFPHAEYSDAIRLTAPCAVDQLPGFSQGWATVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
AAAQ LD + G +LD C+APGGKT H+LE A +++VD + +RL + ENL R
Sbjct: 233 AAAQGCVYWLDPQDGEQILDLCAAPGGKTTHILEAAPKSHVLAVDVDETRLGRVKENLLR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L + A + K+ + R+ + + + FDRIL D PC+ +GV+RR+
Sbjct: 293 LQMHAEV------------------KQGDGRYPDSWCEGRVFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI++L +IL+ +W LK GG +++ TCS+ +E+ +Q F H
Sbjct: 335 PDIKWLRRDRDIEELVALQKEILDAIWPHLKTGGTMVYATCSILPQENTQQVADFLTRHT 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q+LP + DGFFY+
Sbjct: 395 DATLAGTGTREIPGIQMLPYADGG---DGFFYA 424
>gi|168234465|ref|ZP_02659523.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Kentucky str. CDC 191]
gi|194470953|ref|ZP_03076937.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|194457317|gb|EDX46156.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|205331616|gb|EDZ18380.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Kentucky str. CDC 191]
Length = 429
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 112/332 (33%), Positives = 195/332 (58%), Gaps = 34/332 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + ++ + +P W + +++ YP QW+ I++ +++P
Sbjct: 117 LINGVLRQFQRQQETLLNE--FATSDARFLHPGWLVKRLQNAYPT--QWQRIIEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T + LL+ +G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ A L ++G ++LD C+APGGKT H+LE+A + +++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVLAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR +DI +L++ +IL+ +W LKPGG L++ TCS+ EE+ +Q F +
Sbjct: 335 PDIKWLRRDSDIAELAQLQAEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKAFLQRTP 394
Query: 296 DSI-----RLNSPGQLLPTVNKKQDYDGFFYS 322
D+ + PGQ + ++ DGFFY+
Sbjct: 395 DAALSETGTPDQPGQQ--NLPGGEEGDGFFYA 424
>gi|422818448|ref|ZP_16866660.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
M919]
gi|385537854|gb|EIF84721.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
M919]
Length = 429
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 116/333 (34%), Positives = 198/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LRIN+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KATL K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATL------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|261823202|ref|YP_003261308.1| 16S rRNA methyltransferase B [Pectobacterium wasabiae WPP163]
gi|261607215|gb|ACX89701.1| sun protein [Pectobacterium wasabiae WPP163]
Length = 429
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 113/333 (33%), Positives = 192/333 (57%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + + N S++ +P W + +++ YP+ W++++D +++P
Sbjct: 117 LINGVLRQFQRQQEELMQREATN--SSHYLHPSWLLARIEHAYPD--HWQSVVDANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLA--IKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T +Y LL + G+E A I+L +P ++ +P F G+ +IQD
Sbjct: 173 PMWLRVNRLHHTQEAYLDLLAQEGIEAFAHPDYADAIRLASPCAVDLLPGFAQGWATIQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L+ + G +LD C+APGGKT H+LE A +++VD + +RL + ENL R
Sbjct: 233 ASAQGCVYWLEPQDGEQILDLCAAPGGKTTHILEAAPKSHVLAVDIDETRLGRVRENLLR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L + A + K+ + R+ + + FDRIL D PC+ +GV+RR+
Sbjct: 293 LQMHAEV------------------KQGDGRYPDSWCAGRMFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI++L +I++ +W LKPGG +++ TCS+ +E+ +Q F H
Sbjct: 335 PDIKWLRRDRDIEELVALQKEIIDAIWPHLKPGGTMVYATCSILPQENAQQVTDFLSRHA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ +++ PG Q+LP + DGFFY+
Sbjct: 395 DATLVDTGTSEIPGIQMLPHADGG---DGFFYA 424
>gi|418464035|ref|ZP_13034977.1| 16S rRNA methyltransferase B [Aggregatibacter actinomycetemcomitans
RhAA1]
gi|359757376|gb|EHK91530.1| 16S rRNA methyltransferase B [Aggregatibacter actinomycetemcomitans
RhAA1]
Length = 451
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 122/343 (35%), Positives = 190/343 (55%), Gaps = 34/343 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
++NA+LR FLR++ M + +W +P W +N++K YPN W+ I++ ++
Sbjct: 127 LVNAVLRRFLREQ-----ESMLAKVDKHWQTLHPDWLVNKLKKQYPN---WREIIEANNQ 178
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLETTIIG-PLAIKLHTPISISKIPKFFNGFCSIQ 117
KPP+ LR+N +K +L +Y LL ++ I P A+ L P ++ +P F G ++Q
Sbjct: 179 KPPMWLRVNTQKNSLETYRTLLTAQQMDAQIRSHPQALGLTQPTAVQHLPLFAEGGVTVQ 238
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
D AQ AA LL ++G +LDAC+APGGKT H+LE+A ++I++D +RL + ENL
Sbjct: 239 DLHAQWAALLLQPQNGELILDACAAPGGKTTHILELAPQAEVIALDVEENRLQRVKENLA 298
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
R+ +AT++ D + N + + K FDRIL D PC+ +GV+RR+P
Sbjct: 299 RMQQQATVVCGDAA--NPQAWLTKLGKSAVR---------FDRILLDAPCSATGVIRRHP 347
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR++ DI+ L + +IL LW LKP G LL+ TCS+ EE+ Q F + D
Sbjct: 348 DIKWLRKEADIEPLVELQEQILQALWTYLKPNGVLLYATCSVLAEENARQIERFLQRTPD 407
Query: 297 S--IRLNSPGQLLPTVNKKQDY---------DGFFYSLFQKRK 328
+ LN P ++L + DGF+Y+ KR+
Sbjct: 408 AQLAALNLPEEVLARNQSAVGFQFIPQIDGGDGFYYAKLVKRE 450
>gi|386743663|ref|YP_006216842.1| 16S rRNA methyltransferase B [Providencia stuartii MRSN 2154]
gi|384480356|gb|AFH94151.1| 16S rRNA methyltransferase B [Providencia stuartii MRSN 2154]
Length = 428
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 118/335 (35%), Positives = 196/335 (58%), Gaps = 31/335 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR F R++ ++ + N S + +P W + +++ YP+ +W+ I+D +++P
Sbjct: 117 LINGVLRSFQRQQTQLEERNTNN--SSQYLHPSWLLKRLQNAYPD--KWQTIIDANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTII--GPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + T Y K L+++ + + + P AIKL P S++++P F G+ ++QD
Sbjct: 173 PMWLRVNSQHHTAEQYQKYLEENEIASELHPHHPCAIKLSEPTSVTRLPGFEEGWATVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
+AQ A LL+ ++ +LD C+APGGKT H+LE+A +++VD + RL + ENL+R
Sbjct: 233 VSAQGCAELLEPQNHETILDLCAAPGGKTTHILELAPKAHVVAVDIDEHRLKRVKENLQR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L +A +I D +K + + FDRIL D PC+ +GV+RR+PD
Sbjct: 293 LQQQAAVIQGDGTKPE----------------EWANGQLFDRILLDAPCSATGVIRRHPD 336
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI +L++ KIL ++W LK GG L++ TCS+ EE+ Q F H ++
Sbjct: 337 IKWLRRDSDINELTELQAKILESIWPYLKVGGTLVYATCSIMPEENSLQIKNFLAKHPEA 396
Query: 298 IRLN---SPG-QLLPTVNKKQDYDGFFYSLFQKRK 328
LN + G Q+LP++ DGFFY+ K++
Sbjct: 397 -SLNDGTTAGLQILPSITGG---DGFFYARLVKQE 427
>gi|440759392|ref|ZP_20938532.1| Ribosomal RNA small subunit methyltransferase B [Pantoea
agglomerans 299R]
gi|436426880|gb|ELP24577.1| Ribosomal RNA small subunit methyltransferase B [Pantoea
agglomerans 299R]
Length = 433
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 113/330 (34%), Positives = 194/330 (58%), Gaps = 30/330 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++N +LR+F R++ E+ S + + + Y +P W + +++ +P QW+ I++ +++P
Sbjct: 117 LLNGVLRQFQRQREELLAS-IQDGPQRYL-HPGWLLKRLQHAWPE--QWQQIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+NQ+ ++ LL +SG P A++L P +S++P F G+ ++QD
Sbjct: 173 PMWLRVNQQHHERDAWLALLTESGRNAQPADDVPDALRLDAPAPVSQLPGFGQGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
+AQ A LL+ ++G +LD C+APGGKT H+LEIA + ++++VD + RL + ENL+R
Sbjct: 233 LSAQRCALLLEPQNGEQILDLCAAPGGKTTHILEIAPEAEVMAVDVDAQRLKRVEENLQR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KA + K+ + R ++ ++ FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKADV------------------KQGDGRTPQQWCGDRQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L+K +IL+ +W LKPGG L++ TCS+ EE+ +Q F +
Sbjct: 335 PDIKWLRRDRDIAELAKLQSEILDAVWPHLKPGGTLIYATCSILPEENHQQIDAFLQRQH 394
Query: 296 DSIRL---NSPGQLLPTVNKKQDYDGFFYS 322
D+ + ++ L + + DGFFY+
Sbjct: 395 DAQAVPLRDALANGLQVFPQAEGGDGFFYA 424
>gi|27364478|ref|NP_760006.1| 16S rRNA methyltransferase GidB [Vibrio vulnificus CMCP6]
gi|46396909|sp|Q8DDE5.1|RSMB_VIBVU RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|27360597|gb|AAO09533.1| ribosomal RNA small subunit methyltransferase B [Vibrio vulnificus
CMCP6]
Length = 426
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 117/335 (34%), Positives = 190/335 (56%), Gaps = 30/335 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R++ + + + + Y +P W + ++ YP QW+ I++ + K
Sbjct: 113 LINAVLRNYQREQQALDEFSVSHNAGKY-VHPSWLLKILQDAYPE--QWQTIVEANNNKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N Y +LLK + +++T+ AIKL P + +P F G+ S+QD
Sbjct: 170 PMWLRVNHAHHDRDEYLQLLKNANIDSTLHSEAMDAIKLAAPCDVHSLPGFEQGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQL+ L + G +LD C+APGGKT H+LE ++ +++++D + RL ++ENLKR
Sbjct: 230 AAAQLSFNYLQPKDGELILDCCAAPGGKTAHILERVSAREVVALDCDEQRLKRVTENLKR 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
LNL+A +I D N ++++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 290 LNLQAKVICGD----------------ARNPEQWWQGEQFDRILLDAPCSATGVIRRHPD 333
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIF-----SK 292
I WLRR DI L++ +I + +W LKPGG L++ TCS+ E+ EQ F +
Sbjct: 334 IKWLRRAEDITALAQLQSEIFDAMWAQLKPGGTLVYATCSITPMENVEQVKAFLARTSAA 393
Query: 293 NHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 327
S R N Q++P ++D DGF+Y++ K+
Sbjct: 394 QLVGSERENPGRQIIPG---EEDMDGFYYAVLVKQ 425
>gi|50122921|ref|YP_052088.1| 16S rRNA methyltransferase GidB [Pectobacterium atrosepticum
SCRI1043]
gi|81643776|sp|Q6D000.1|RSMB_ERWCT RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|49613447|emb|CAG76898.1| Sun protein [Pectobacterium atrosepticum SCRI1043]
Length = 429
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 192/333 (57%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + + H S++ +P W + +++ YPN W+ I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLQREA--THSSHYLHPSWLLARIEHAYPN--NWRGIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T +Y LL + G+E AI+L +P ++ ++P F G+ ++QD
Sbjct: 173 PMWLRVNRLHHTREAYLNLLMQGGIEAFPHTEYSDAIRLASPCAVDQLPGFSQGWATVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LD + G +LD C+APGGKT H+LE A +++VD + +RL + ENL R
Sbjct: 233 ASAQGCVYWLDPQDGEQILDLCAAPGGKTTHILEAAPKSHVLAVDVDETRLGRVKENLLR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L + A + K+ + R+ + + + FDRIL D PC+ +GV+RR+
Sbjct: 293 LQMHAEV------------------KQGDGRYPDSWCEARVFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI++L +IL+ +W LK GG +++ TCS+ +E+ +Q F H
Sbjct: 335 PDIKWLRRDRDIEELVALQKEILDAIWPHLKTGGTMVYATCSILPQENTQQVTGFLSRHA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ +++ PG Q+LP + DGFFY+
Sbjct: 395 DAALVDTGTSEIPGIQILPHADSG---DGFFYA 424
>gi|198244494|ref|YP_002217372.1| 16S rRNA methyltransferase GidB [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|375120886|ref|ZP_09766053.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Dublin str. SD3246]
gi|445144552|ref|ZP_21387149.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Dublin str. SL1438]
gi|445155492|ref|ZP_21392322.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Dublin str. HWS51]
gi|224493260|sp|B5FJI4.1|RSMB_SALDC RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|197939010|gb|ACH76343.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|326625153|gb|EGE31498.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Dublin str. SD3246]
gi|444846719|gb|ELX71875.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Dublin str. SL1438]
gi|444848966|gb|ELX74084.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Dublin str. HWS51]
Length = 429
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 113/332 (34%), Positives = 194/332 (58%), Gaps = 34/332 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + ++ + +P W + +++ YP QW+ I++ +++P
Sbjct: 117 LINGVLRQFQRQQETLLNE--FATSDARFLHPGWLVKRLQNAYPT--QWQRIIEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T + LL+ +G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ A L ++G ++LD CSAPGGKT H+LE+A + +++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCAVFLAPQNGEHILDLCSAPGGKTTHILEVAPEADVLAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LKPGG L++ TCS+ EE+ +Q F +
Sbjct: 335 PDIKWLRRDRDIVELAQLQAEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKTFLQRTP 394
Query: 296 DSI-----RLNSPGQLLPTVNKKQDYDGFFYS 322
D+ + PGQ + ++ DGFFY+
Sbjct: 395 DAALSETGTPDQPGQQ--NLPGGEEGDGFFYA 424
>gi|416051219|ref|ZP_11577317.1| SUN protein [Aggregatibacter actinomycetemcomitans serotype e str.
SC1083]
gi|347993237|gb|EGY34611.1| SUN protein [Aggregatibacter actinomycetemcomitans serotype e str.
SC1083]
Length = 451
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 122/343 (35%), Positives = 190/343 (55%), Gaps = 34/343 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
++N++LR FLR++ M + +W +P W +N++K YPN W+ I++ ++
Sbjct: 127 LVNSVLRRFLREQ-----ESMLAKVDKHWQTLHPDWLVNKLKKQYPN---WREIIEANNQ 178
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLETTIIG-PLAIKLHTPISISKIPKFFNGFCSIQ 117
KPP+ LR+N +K +L +Y LL ++ I P A+ L P + +P F G ++Q
Sbjct: 179 KPPMWLRVNTQKNSLETYRTLLTAQQMDAQITSHPQALGLTQPTVVQHLPLFAEGGVTVQ 238
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
D AQ AA LL ++G +LDAC+APGGKT H+LE+A ++I++D +RL ++ENL
Sbjct: 239 DLHAQWAALLLQPQNGELILDACAAPGGKTTHILELAPQAEVIALDVEENRLQRVNENLA 298
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
R+ +AT+I D + N + + K FDRIL D PC+ +GV+RR+P
Sbjct: 299 RMQQQATVICGDAA--NPQAWLTKLGKSAAR---------FDRILLDAPCSATGVIRRHP 347
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR++ DI+ L + +IL LW LKP G LL+ TCS+ EE+ Q F + D
Sbjct: 348 DIKWLRKEADIQPLVELQEQILQALWTYLKPNGVLLYATCSVLAEENARQIERFLQRTPD 407
Query: 297 S--IRLNSPGQLLPTVNKKQDY---------DGFFYSLFQKRK 328
+ LN P ++L + DGF+Y+ KR+
Sbjct: 408 AQLAALNLPEEVLARNQSAVGFQFIPQIDGGDGFYYAKLVKRE 450
>gi|213584492|ref|ZP_03366318.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhi str. E98-0664]
Length = 364
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 112/332 (33%), Positives = 194/332 (58%), Gaps = 34/332 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + ++ + +P W + +++ YP QW+ I++ +++P
Sbjct: 52 LINGVLRQFQRQQETLLNE--FATSDARFLHPGWLVKRLQNAYPT--QWQRIIEANNQRP 107
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T + LL+ +G++ P A++L TP + +P F G+ ++QD
Sbjct: 108 PMWLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQD 167
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ A L ++G ++LD C+APGGKT H+LE+A + +++VD + RL+ + +NLKR
Sbjct: 168 ASAQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVLAVDIDEQRLSRVYDNLKR 227
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 228 LGMKATV------------------KQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRH 269
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LKPGG L++ TCS+ EE+ +Q F +
Sbjct: 270 PDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKAFLQRTP 329
Query: 296 DSI-----RLNSPGQLLPTVNKKQDYDGFFYS 322
D+ + PGQ + ++ DGFFY+
Sbjct: 330 DAALSETGTPDQPGQQ--NLPGGEEGDGFFYA 359
>gi|120596855|ref|YP_961429.1| sun protein [Shewanella sp. W3-18-1]
gi|120556948|gb|ABM22875.1| sun protein [Shewanella sp. W3-18-1]
Length = 429
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 116/302 (38%), Positives = 174/302 (57%), Gaps = 26/302 (8%)
Query: 29 WNYPIWWINQVKITYPNFFQWKNILDVGHKKPPLTLRINQRKTTLISYNKLLKKSGLETT 88
+N P W I ++K YP QW++I+ H++PP+ LR N+ + Y L + +E +
Sbjct: 138 YNTPAWLIKRLKEAYPE--QWQDIIQQSHERPPMWLRNNRLSQSRTEYLAALAELDIEAS 195
Query: 89 IIGPL-AIKLHTPISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKT 147
AI L P ++ +P+F G S+QD AAQ AA LL + +LDAC+APGGK+
Sbjct: 196 EGSSADAILLAHPKDVATLPRFHEGAASVQDGAAQWAATLLAPQVNELILDACAAPGGKS 255
Query: 148 CHLLEIA-DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTN 206
CHLLE+ IKL++VD + RL + +NL RL+LKA LI D + I
Sbjct: 256 CHLLELEPSIKLVAVDFDAKRLERVQQNLDRLSLKAELIHGDAANIG------------- 302
Query: 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLK 266
+++ FDRIL D PC+ +GV+RR+PDI WLR+ +DI++L++ +IL++ WK LK
Sbjct: 303 ---SWWQGGLFDRILLDAPCSATGVIRRHPDIKWLRKNHDIEELAELQQQILDHCWKWLK 359
Query: 267 PGGKLLFVTCSLWFEESEEQAIIFSKNHKDS-----IRLNSPGQLLPTVNKKQD-YDGFF 320
PGG LL+ TCS+ +E+ +Q F D+ + NSP + + QD DGF+
Sbjct: 360 PGGTLLYATCSILPQENRDQISAFLDRTVDAKLDILAQQNSPQDIGWQITPGQDNMDGFY 419
Query: 321 YS 322
Y+
Sbjct: 420 YA 421
>gi|238758791|ref|ZP_04619965.1| Ribosomal RNA small subunit methyltransferase B [Yersinia aldovae
ATCC 35236]
gi|238703088|gb|EEP95631.1| Ribosomal RNA small subunit methyltransferase B [Yersinia aldovae
ATCC 35236]
Length = 429
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 197/333 (59%), Gaps = 26/333 (7%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + N +S + +P W + ++K YP+ QW+ IL+ ++KP
Sbjct: 117 LINGVLRQFQRQQVELLERAANN--DSRYLHPSWLLARIKQAYPD--QWQQILEANNQKP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+++ + Y +LLK++ ++ A++L TP +++ +P F G+ ++QD
Sbjct: 173 PMWLRVSRLHHSRNEYLELLKQANIDALPHDFYSDAVRLITPCAVNDLPGFELGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LLD + G +LD C+APGGKT H+LE A ++++D + RL+ + ENL+R
Sbjct: 233 ASAQGCVDLLDPQDGEQILDLCAAPGGKTTHILEAAPKAHVLAIDIDEQRLSRVKENLQR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
LNL A + + D +T + + ++ FDRIL D PC+ +GV+RR+PD
Sbjct: 293 LNLHAVVRVGD--------------GRTPDEW--CGDQQFDRILLDAPCSATGVIRRHPD 336
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI L+K +I+ +W LK GG +++ TCS+ +E+++Q F + H ++
Sbjct: 337 IKWLRRDSDIADLAKLQSEIVEAIWPKLKKGGVMVYATCSILPDENQQQIAAFLQRHSEA 396
Query: 298 IRLNSPGQLLP---TVNKKQDYDGFFYSLFQKR 327
+ + + P + +D DGFFY+ KR
Sbjct: 397 ELVETGTAVAPGKQNLPHPEDGDGFFYAKLIKR 429
>gi|386311814|ref|YP_006007979.1| sun protein [Shewanella putrefaciens 200]
gi|319424439|gb|ADV52513.1| sun protein [Shewanella putrefaciens 200]
Length = 429
Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 116/302 (38%), Positives = 174/302 (57%), Gaps = 26/302 (8%)
Query: 29 WNYPIWWINQVKITYPNFFQWKNILDVGHKKPPLTLRINQRKTTLISYNKLLKKSGLETT 88
+N P W I ++K YP QW++I+ H++PP+ LR N+ + Y L + +E +
Sbjct: 138 YNTPAWLIKRLKEAYPE--QWQDIIQQSHERPPMWLRNNRLSQSRTEYLAALAELDIEAS 195
Query: 89 IIGPL-AIKLHTPISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKT 147
AI L P ++ +P+F G S+QD AAQ AA LL + +LDAC+APGGK+
Sbjct: 196 EGSSADAILLAHPKDVATLPRFHEGAASVQDGAAQWAATLLAPQVNELILDACAAPGGKS 255
Query: 148 CHLLEIA-DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTN 206
CHLLE+ I L++VD + RL + +NL RL+LKA LI SD + I
Sbjct: 256 CHLLELEPSINLVAVDFDAKRLERVQQNLDRLSLKAELIHSDAANIG------------- 302
Query: 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLK 266
+++ FDRIL D PC+ +GV+RR+PDI WLR+ +DI++L++ +IL++ WK LK
Sbjct: 303 ---SWWQGGLFDRILLDAPCSATGVIRRHPDIKWLRKNHDIEELAELQQQILDHCWKWLK 359
Query: 267 PGGKLLFVTCSLWFEESEEQAIIFSKNHKDS-----IRLNSPGQLLPTVNKKQD-YDGFF 320
PGG LL+ TCS+ +E+ +Q F D+ + NSP + + QD DGF+
Sbjct: 360 PGGTLLYATCSILPQENRDQISAFLDRTVDAKLDILAQQNSPQDIGWQITPGQDNMDGFY 419
Query: 321 YS 322
Y+
Sbjct: 420 YA 421
>gi|423141924|ref|ZP_17129562.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. houtenae str. ATCC BAA-1581]
gi|379049853|gb|EHY67746.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. houtenae str. ATCC BAA-1581]
Length = 429
Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 115/333 (34%), Positives = 195/333 (58%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQETLLNE--FATSDARFLHPGWLVKRLQKAYPT--QWQHIIEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T + LL+ +GL+ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHTRDGWLALLEDAGLKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ A L ++G ++LD C+APGGKT H+LE A + +++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCAVFLVPQNGEHILDLCAAPGGKTTHILEAAPEANVLAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LKPGG L++ TCS+ EE+ +Q F +
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATCSVLPEENSDQIKTFLQRTP 394
Query: 296 DSI-----RLNSPGQL-LPTVNKKQDYDGFFYS 322
D+ + PGQ LP ++ DGFFY+
Sbjct: 395 DAALSETGTPDQPGQQNLPGA---EEGDGFFYA 424
>gi|212211692|ref|YP_002302628.1| 16S rRNA m(5)C 967 methyltransferase [Coxiella burnetii CbuG_Q212]
gi|212010102|gb|ACJ17483.1| 16S rRNA m(5)C 967 methyltransferase [Coxiella burnetii CbuG_Q212]
Length = 430
Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 126/343 (36%), Positives = 193/343 (56%), Gaps = 39/343 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR F+ +K E+F I E + +P+W+I +K +P+ W++IL + +P
Sbjct: 108 LINKLLRRFIAEKDELFTFTEKTI-EGQYAHPLWFIQHIKKAWPD--HWESILIANNARP 164
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+TLR+N K + Y ++L + + + P AI+L P S+ ++P F G+C IQD
Sbjct: 165 PMTLRVNLTKISREIYLEMLDQKNISAKPLDFLPAAIQLEKPCSVHQLPGFNEGYCYIQD 224
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEI-ADIK-LISVDNNLSRLNMISENLK 176
AA Q AA LL + + VLDAC+APG KT H+LE+ +K L+++DNN RLN I EN+
Sbjct: 225 AAGQFAAYLLKLENNQTVLDACAAPGSKTSHILEVNPHLKTLVAIDNNKQRLNRIKENIT 284
Query: 177 RLNLKA---TLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVR 233
RL L+ +L+D+S+I+ ++ + FDRIL D PC+ +GV+R
Sbjct: 285 RLGLRQEHLQCLLADVSQID----------------QWSSGELFDRILLDAPCSATGVIR 328
Query: 234 RNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKN 293
R+PDI LR+ DI + + ++LN LW +LK GG LL+ TCS+ +E+E+ F
Sbjct: 329 RHPDIKLLRQPGDISQYHQKKLQLLNALWAVLKSGGFLLYSTCSVLPDENEKVIEEFLST 388
Query: 294 H----------KDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 326
H ++L Q LP + K DGF+YSL K
Sbjct: 389 HDKVELSPTNVHGGLQLKYGVQQLPGQDNK---DGFYYSLLFK 428
>gi|16762874|ref|NP_458491.1| 16S rRNA methyltransferase GidB [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|29144361|ref|NP_807703.1| 16S rRNA methyltransferase GidB [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|213425783|ref|ZP_03358533.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhi str. E02-1180]
gi|213859535|ref|ZP_03385239.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhi str. M223]
gi|289806045|ref|ZP_06536674.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhi str. AG3]
gi|378962278|ref|YP_005219764.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Typhi str. P-stx-12]
gi|46396982|sp|Q8Z1X1.1|RSMB_SALTI RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|25303750|pir||AH1009 sun protein [imported] - Salmonella enterica subsp. enterica
serovar Typhi (strain CT18)
gi|16505181|emb|CAD09177.1| sun protein [Salmonella enterica subsp. enterica serovar Typhi]
gi|29139999|gb|AAO71563.1| sun protein [Salmonella enterica subsp. enterica serovar Typhi str.
Ty2]
gi|374356150|gb|AEZ47911.1| Ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Typhi str. P-stx-12]
Length = 429
Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 112/332 (33%), Positives = 194/332 (58%), Gaps = 34/332 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + ++ + +P W + +++ YP QW+ I++ +++P
Sbjct: 117 LINGVLRQFQRQQETLLNE--FATSDARFLHPGWLVKRLQNAYPT--QWQRIIEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T + LL+ +G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ A L ++G ++LD C+APGGKT H+LE+A + +++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVLAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LKPGG L++ TCS+ EE+ +Q F +
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKAFLQRTP 394
Query: 296 DSI-----RLNSPGQLLPTVNKKQDYDGFFYS 322
D+ + PGQ + ++ DGFFY+
Sbjct: 395 DAALSETGTPDQPGQQ--NLPGGEEGDGFFYA 424
>gi|114561210|ref|YP_748723.1| sun protein [Shewanella frigidimarina NCIMB 400]
gi|114332503|gb|ABI69885.1| sun protein [Shewanella frigidimarina NCIMB 400]
Length = 427
Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 119/333 (35%), Positives = 186/333 (55%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++N +LR R+ E+ +N P W+I ++ YP+ W++I++ H++P
Sbjct: 114 VVNGVLRNIQRQDSELNTDS----DTLRFNTPAWFIKHLQQAYPD--NWQDIIEQSHQRP 167
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTI-IGPLAIKLHTPISISKIPKFFNGFCSIQDA 119
P+ LR NQ+ T +Y L + + P AI L + ++ +P F G S+QD
Sbjct: 168 PMWLRNNQQSQTCDAYLAALAQHDISAQAGSSPNAILLESAKDVAALPDFMEGAASVQDG 227
Query: 120 AAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKRL 178
AAQ AA LL + VLDAC+APGGK+CHLLE+A I L++VD + RL + +NL RL
Sbjct: 228 AAQWAATLLAPTADELVLDACAAPGGKSCHLLELAPTINLVAVDFDQKRLARVQQNLDRL 287
Query: 179 NLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDI 238
+LKA LI D + I +++ + FDRIL D PC+ +GV+RR+PDI
Sbjct: 288 HLKAQLIHGDAADIP----------------SWWQGQQFDRILLDAPCSATGVIRRHPDI 331
Query: 239 PWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS- 297
WLR+ +DI++L+ +IL++ W+ LKPGG LL+ TCS+ +E+ +Q F D+
Sbjct: 332 KWLRKNSDIEELANLQKQILDHCWQWLKPGGTLLYATCSILPQENSQQVEQFLARTADAS 391
Query: 298 -------IRLNSPG-QLLPTVNKKQDYDGFFYS 322
++ G Q+LP + + DGF+Y+
Sbjct: 392 LVPIEQQAHISDIGWQILPG---QDNMDGFYYA 421
>gi|74313807|ref|YP_312226.1| 16S rRNA methyltransferase GidB [Shigella sonnei Ss046]
gi|414578069|ref|ZP_11435241.1| ribosomal RNA small subunit methyltransferase B [Shigella sonnei
3233-85]
gi|419921289|ref|ZP_14439345.1| 16S rRNA methyltransferase B [Escherichia coli 541-15]
gi|420360638|ref|ZP_14861592.1| ribosomal RNA small subunit methyltransferase B [Shigella sonnei
3226-85]
gi|123759539|sp|Q3YWX1.1|RSMB_SHISS RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|73857284|gb|AAZ89991.1| conserved hypothetical protein [Shigella sonnei Ss046]
gi|388397899|gb|EIL58856.1| 16S rRNA methyltransferase B [Escherichia coli 541-15]
gi|391278405|gb|EIQ37112.1| ribosomal RNA small subunit methyltransferase B [Shigella sonnei
3226-85]
gi|391282217|gb|EIQ40853.1| ribosomal RNA small subunit methyltransferase B [Shigella sonnei
3233-85]
Length = 429
Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 198/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FNTSDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVHDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|387772919|ref|ZP_10128523.1| ribosomal RNA small subunit methyltransferase B [Haemophilus
parahaemolyticus HK385]
gi|386906012|gb|EIJ70761.1| ribosomal RNA small subunit methyltransferase B [Haemophilus
parahaemolyticus HK385]
Length = 439
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 122/341 (35%), Positives = 192/341 (56%), Gaps = 41/341 (12%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
+ N +LR FLR++ +I + + +W +P W++N++K YP+ W+ I++ ++
Sbjct: 123 LTNGVLRRFLREQEQILA-----VVDKHWQTLHPEWFVNKIKKAYPH---WREIVEANNQ 174
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLE----TTIIGPLAIKLHTPISISKIPKFFNGFC 114
+PP+ +R N + Y LL + + + AI L P+S++++P F G+
Sbjct: 175 RPPMWVRANVQHIQPKDYVALLGELANQRENPPACVPDCAILLENPVSVNQLPHFEQGWA 234
Query: 115 SIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLI-SVDNNLSRLNMISE 173
++QDA AQ +A LLD ++G +LDAC+APGGKT H+LE A ++ ++D +RL + E
Sbjct: 235 TVQDAHAQWSAELLDAQNGETILDACAAPGGKTTHILEKAPQAVVFALDIEENRLKRVRE 294
Query: 174 NLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVR 233
NL RLN AT+I D S+ + K FDRIL D PC+ +GV+R
Sbjct: 295 NLMRLNQAATVICGDASQPDT---------------WLEKGVMFDRILLDAPCSATGVIR 339
Query: 234 RNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKN 293
R+PDI WLR++ DI +L+ KIL LW LKP G LL+ TCS+ EE+ Q F +N
Sbjct: 340 RHPDIKWLRKEADITELANLQAKILEALWARLKPNGILLYATCSILPEENSLQIQRFLEN 399
Query: 294 HKD--SIRLNSPGQLLPTVNKKQDY------DGFFYSLFQK 326
H D ++ ++ G+ V +KQ + DGFFY+ +K
Sbjct: 400 HSDAEAVEMDFHGE---KVTEKQFFPQPNGGDGFFYAKLKK 437
>gi|331659579|ref|ZP_08360517.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TA206]
gi|331052794|gb|EGI24827.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TA206]
Length = 429
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 115/333 (34%), Positives = 198/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN ILR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGILRQFQRQQDELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|183600721|ref|ZP_02962214.1| hypothetical protein PROSTU_04317 [Providencia stuartii ATCC 25827]
gi|188019701|gb|EDU57741.1| ribosomal RNA small subunit methyltransferase B [Providencia
stuartii ATCC 25827]
Length = 428
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 118/335 (35%), Positives = 196/335 (58%), Gaps = 31/335 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR F R++ ++ + N S + +P W + +++ YP+ +W+ I+D +++P
Sbjct: 117 LINGVLRSFQRQQTQLEERNTNN--SSQYLHPSWLLKRLQNAYPD--KWQTIIDANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTII--GPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + T Y K L+++ + + + P AIKL P S++++P F G+ ++QD
Sbjct: 173 PMWLRVNSQHHTAEQYQKYLEENEIASELHPHHPCAIKLSEPTSVTRLPGFEKGWATVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
+AQ A LL+ ++ +LD C+APGGKT H+LE+A +++VD + RL + ENL+R
Sbjct: 233 VSAQGCAELLEPQNHETILDLCAAPGGKTTHILELAPKAHVVAVDIDEHRLKRVKENLQR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L +A +I D +K + + FDRIL D PC+ +GV+RR+PD
Sbjct: 293 LQQQAAVIQGDGTKPE----------------EWANGQLFDRILLDAPCSATGVIRRHPD 336
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI +L++ KIL ++W LK GG L++ TCS+ EE+ Q F H ++
Sbjct: 337 IKWLRRDSDINELTELQAKILESIWPYLKVGGTLVYATCSIMPEENSLQIKNFLAKHPEA 396
Query: 298 IRLN---SPG-QLLPTVNKKQDYDGFFYSLFQKRK 328
LN + G Q+LP++ DGFFY+ K++
Sbjct: 397 -SLNDGTTAGLQILPSITGG---DGFFYARLVKQE 427
>gi|416811984|ref|ZP_11890205.1| 16S rRNA methyltransferase B [Escherichia coli O55:H7 str. 3256-97]
gi|419122540|ref|ZP_13667482.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC5B]
gi|320655927|gb|EFX23847.1| 16S rRNA methyltransferase B [Escherichia coli O55:H7 str. 3256-97
TW 07815]
gi|377962608|gb|EHV26060.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC5B]
Length = 429
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 115/333 (34%), Positives = 198/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FNTSDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LRIN+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|291284647|ref|YP_003501465.1| ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) [Escherichia coli
O55:H7 str. CB9615]
gi|387508680|ref|YP_006160936.1| 16S rRNA methyltransferase B [Escherichia coli O55:H7 str. RM12579]
gi|416789220|ref|ZP_11880351.1| 16S rRNA methyltransferase B [Escherichia coli O157:H- str. 493-89]
gi|416801083|ref|ZP_11885256.1| 16S rRNA methyltransferase B [Escherichia coli O157:H- str. H 2687]
gi|416822289|ref|ZP_11894725.1| 16S rRNA methyltransferase B [Escherichia coli O55:H7 str. USDA
5905]
gi|419116824|ref|ZP_13661835.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC5A]
gi|419128103|ref|ZP_13672977.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC5C]
gi|419133392|ref|ZP_13678219.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC5D]
gi|420282989|ref|ZP_14785221.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TW06591]
gi|425251132|ref|ZP_18644070.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
5905]
gi|425269170|ref|ZP_18660795.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
5412]
gi|209757338|gb|ACI76981.1| RNA methyltransferase [Escherichia coli]
gi|209757344|gb|ACI76984.1| RNA methyltransferase [Escherichia coli]
gi|290764520|gb|ADD58481.1| Ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) [Escherichia coli
O55:H7 str. CB9615]
gi|320645091|gb|EFX14107.1| 16S rRNA methyltransferase B [Escherichia coli O157:H- str. 493-89]
gi|320650402|gb|EFX18868.1| 16S rRNA methyltransferase B [Escherichia coli O157:H- str. H 2687]
gi|320661379|gb|EFX28794.1| 16S rRNA methyltransferase B [Escherichia coli O55:H7 str. USDA
5905]
gi|374360674|gb|AEZ42381.1| 16S rRNA methyltransferase B [Escherichia coli O55:H7 str. RM12579]
gi|377958171|gb|EHV21691.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC5A]
gi|377970841|gb|EHV34199.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC5C]
gi|377972115|gb|EHV35465.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC5D]
gi|390779780|gb|EIO47494.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TW06591]
gi|408162093|gb|EKH90013.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
5905]
gi|408181314|gb|EKI07875.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
5412]
Length = 429
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 115/333 (34%), Positives = 198/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FNTSDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LRIN+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|423744005|ref|ZP_17710938.1| ribosomal RNA small subunit methyltransferase B, partial [Vibrio
cholerae HC-50A2]
gi|408645484|gb|EKL17133.1| ribosomal RNA small subunit methyltransferase B, partial [Vibrio
cholerae HC-50A2]
Length = 293
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 111/307 (36%), Positives = 180/307 (58%), Gaps = 29/307 (9%)
Query: 29 WNYPIWWINQVKITYPNFFQWKNILDVGHKKPPLTLRINQRKTTLISYNKLLKKSGLETT 88
+ +P W + +K +YP QW+ I++ + K P+ LR+N + T Y LL+++G+ TT
Sbjct: 7 YGHPGWLLKLLKESYPE--QWQQIVEANNSKAPMWLRVNHQHHTRAEYQALLEQAGIVTT 64
Query: 89 IIGPL--AIKLHTPISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGK 146
A+ L TP + ++P F G+ S+QDAAAQLA L ++G +LD C+APGGK
Sbjct: 65 PHAQAEDALCLETPCDVHQLPGFAEGWVSVQDAAAQLALTYLAPQAGELILDCCAAPGGK 124
Query: 147 TCHLLE-IADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKT 205
T H+LE + +++++D + +RL + ENL+RL L A +I D
Sbjct: 125 TAHILERTPESQVVAIDCDETRLKRVRENLQRLELTAQVICGDARYPQ------------ 172
Query: 206 NNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKML 265
++++ + FDRIL D PC+ +GV+RR+PDI WLRR +DI L++ +IL+ +W+ L
Sbjct: 173 ----QWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREILDAMWQQL 228
Query: 266 KPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFF 320
KPGG L++ TCS+ +E+ Q F + D+ + S PG Q+LP ++ DGF+
Sbjct: 229 KPGGSLVYATCSITPQENRLQVKAFLERTPDARLVGSEPAQPGRQILP---GEEAMDGFY 285
Query: 321 YSLFQKR 327
Y++ K+
Sbjct: 286 YAVLSKQ 292
>gi|383936055|ref|ZP_09989485.1| ribosomal RNA small subunit methyltransferase B [Rheinheimera
nanhaiensis E407-8]
gi|383702811|dbj|GAB59576.1| ribosomal RNA small subunit methyltransferase B [Rheinheimera
nanhaiensis E407-8]
Length = 438
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 122/332 (36%), Positives = 189/332 (56%), Gaps = 31/332 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INAILR R+ +F+ Y N+P W IN+++ YP QW+ +L +K
Sbjct: 116 LINAILRSVQRQPA-LFQFDTAADAVKY-NHPGWLINRLRHAYPQ--QWQQVLAANQQKA 171
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT---IIGPLAIKLHTPISISKIPKFFNGFCSIQ 117
PL LR+N ++ Y L ++G+E + P AIKL ++ +P + G+ S+Q
Sbjct: 172 PLWLRVNTQRINPTDYAAALTRAGIEYSRPVAELPQAIKLAQAQEVTTLPGYAEGWFSVQ 231
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLK 176
DAAAQ AA LL + ++LDAC APGGK+CH+LE+A L ++D + RL + ENL
Sbjct: 232 DAAAQYAATLLQVNDSQHILDACCAPGGKSCHILELAPRANLTALDKDAKRLTRVEENLA 291
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L+A +I +D ++ + +++ + +DRIL D+PC+ +GV+RR+P
Sbjct: 292 RLGLQAKVIAADAAQPD----------------SWWQGQLYDRILLDVPCSATGVIRRHP 335
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR+ DI L + +IL W++L PGG LL+ TCS+ +E+ Q F +++ D
Sbjct: 336 DIRWLRKNTDIAPLCQLQQQILQQCWRLLAPGGVLLYATCSVLPDENSAQITHFLQHNAD 395
Query: 297 SIRLNS-PGQLLPTVN-----KKQDYDGFFYS 322
+ RL+ P Q TV +QD DGF+Y+
Sbjct: 396 A-RLDPLPQQNAGTVGWQLLPGEQDLDGFYYA 426
>gi|161506038|ref|YP_001573150.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. arizonae
serovar 62:z4,z23:- str. RSK2980]
gi|224493259|sp|A9MN78.1|RSMB_SALAR RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|160867385|gb|ABX24008.1| hypothetical protein SARI_04219 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
Length = 429
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 115/333 (34%), Positives = 193/333 (57%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQETLLNE--FATSDARFLHPGWLVKRLQNAYPT--QWQHIIEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T + LL+ +G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE A + +++VD + RL+ I +NLKR
Sbjct: 233 ASAQKCVAFLAPQNGEHILDLCAAPGGKTTHILEAAPEADVLAVDVDEQRLSRIYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPAQWCDEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L+K +IL+ +W LKPGG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIAELAKLQAEILDTVWPRLKPGGTLVYATCSVLPEENSAQINAFLQRTP 394
Query: 296 DSI-----RLNSPGQL-LPTVNKKQDYDGFFYS 322
D+ + PGQ LP ++ DGFFY+
Sbjct: 395 DAALSETGTPDQPGQQNLPGA---EEGDGFFYA 424
>gi|82778586|ref|YP_404935.1| 16S rRNA methyltransferase GidB [Shigella dysenteriae Sd197]
gi|309785611|ref|ZP_07680242.1| ribosomal RNA small subunit methyltransferase B [Shigella
dysenteriae 1617]
gi|123742076|sp|Q32B61.1|RSMB_SHIDS RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|81242734|gb|ABB63444.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
gi|308926731|gb|EFP72207.1| ribosomal RNA small subunit methyltransferase B [Shigella
dysenteriae 1617]
Length = 429
Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 115/333 (34%), Positives = 198/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FNTSDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LRIN+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGKHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|418774077|ref|ZP_13330048.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 33953]
gi|392751579|gb|EJA08527.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 33953]
Length = 429
Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 112/332 (33%), Positives = 195/332 (58%), Gaps = 34/332 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQETLLNE--FATSDARFLHPGWLVKRLQNAYPT--QWQHIIEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T + LL+ +G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ A L ++G ++LD C+APGGKT H+LE+A + +++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVLAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LKPGG L++ TCS+ EE+ +Q F +
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKTFLQRTP 394
Query: 296 D-----SIRLNSPGQLLPTVNKKQDYDGFFYS 322
D + + PGQ + ++ DGFFY+
Sbjct: 395 DVALSETGTPDQPGQQ--NLPGGEEGDGFFYA 424
>gi|59713152|ref|YP_205928.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Vibrio fischeri
ES114]
gi|423687274|ref|ZP_17662082.1| 16S rRNA methyltransferase B [Vibrio fischeri SR5]
gi|59481253|gb|AAW87040.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Vibrio fischeri
ES114]
gi|371493533|gb|EHN69135.1| 16S rRNA methyltransferase B [Vibrio fischeri SR5]
Length = 426
Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 118/335 (35%), Positives = 189/335 (56%), Gaps = 31/335 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R + E+ +K + + +P W + ++ YP QW+NI++ + K
Sbjct: 113 LINAVLRNYQRSQEEL-DAKSVSHDSGKYGHPGWLLKMLQQAYPE--QWENIVEANNSKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + T Y LL+K + T A+ L + +P F G+ S+QD
Sbjct: 170 PMWLRVNSQHHTRDEYIALLEKEEISVTPHSQATDALLLDKARDVYTLPGFEQGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQL+A L ++G +LD C+APGGKT H+LE D ++++D + +RL + ENL+R
Sbjct: 230 AAAQLSAEYLQPQNGELILDCCAAPGGKTAHILERTQDTSVVAIDCDETRLKRVYENLER 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
LNLKA +I D + ++K + FDRIL D PC+ +GV+RR+PD
Sbjct: 290 LNLKAQVICGD----------------ARHPEEWWKGEQFDRILLDAPCSATGVIRRHPD 333
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR DIK L++ +I + +W LK GG +++ TCS+ E+ +Q F D+
Sbjct: 334 IKWLRRSEDIKALAELQSEIFDAMWLQLKSGGTMVYATCSITPLENCDQVKAFLARTSDA 393
Query: 298 IRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQK 326
+++ PG Q+LP +++ DGF+Y++ QK
Sbjct: 394 TLIDNTDPEKPGRQILPG---EENMDGFYYAVLQK 425
>gi|432949483|ref|ZP_20144264.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE196]
gi|433044820|ref|ZP_20232306.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE117]
gi|431454030|gb|ELH34408.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE196]
gi|431553837|gb|ELI27759.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE117]
Length = 429
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 115/333 (34%), Positives = 198/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FNTSDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LRIN+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRINRTHHSRDSWLALLGEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|420365321|ref|ZP_14866188.1| ribosomal RNA small subunit methyltransferase B [Shigella sonnei
4822-66]
gi|391292350|gb|EIQ50686.1| ribosomal RNA small subunit methyltransferase B [Shigella sonnei
4822-66]
Length = 454
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 198/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 142 LINGVLRQFQRQQEELLAE--FNTSDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 197
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 198 PMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 257
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 258 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVHDNLKR 317
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 318 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 359
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 360 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 419
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 420 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 449
>gi|417285305|ref|ZP_12072596.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TW07793]
gi|422371098|ref|ZP_16451481.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 16-3]
gi|432900553|ref|ZP_20110932.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE192]
gi|433030199|ref|ZP_20218049.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE109]
gi|315297154|gb|EFU56434.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 16-3]
gi|386250546|gb|EII96713.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TW07793]
gi|431423508|gb|ELH05634.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE192]
gi|431540947|gb|ELI16398.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE109]
Length = 429
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 198/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQDELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|16131168|ref|NP_417747.1| 16S rRNA m(5)C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli str.
K-12 substr. MG1655]
gi|157162762|ref|YP_001460080.1| 16S rRNA methyltransferase B [Escherichia coli HS]
gi|170018476|ref|YP_001723430.1| 16S rRNA methyltransferase B [Escherichia coli ATCC 8739]
gi|170082809|ref|YP_001732129.1| 16S rRNA methyltransferase B [Escherichia coli str. K-12 substr.
DH10B]
gi|188493203|ref|ZP_03000473.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
53638]
gi|194439994|ref|ZP_03072052.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
101-1]
gi|238902379|ref|YP_002928175.1| 16S rRNA methyltransferase B [Escherichia coli BW2952]
gi|251786542|ref|YP_003000846.1| 16S rRNA m[5]C967 methyltransferase [Escherichia coli BL21(DE3)]
gi|253771888|ref|YP_003034719.1| 16S rRNA methyltransferase B [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|254163216|ref|YP_003046324.1| 16S rRNA methyltransferase B [Escherichia coli B str. REL606]
gi|254289966|ref|YP_003055714.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli
BL21(DE3)]
gi|300932181|ref|ZP_07147461.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 187-1]
gi|300946510|ref|ZP_07160776.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 116-1]
gi|300955326|ref|ZP_07167708.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 175-1]
gi|301021178|ref|ZP_07185214.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 196-1]
gi|301643892|ref|ZP_07243922.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 146-1]
gi|312972450|ref|ZP_07786624.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
1827-70]
gi|331643984|ref|ZP_08345113.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
H736]
gi|386283044|ref|ZP_10060684.1| ribosomal RNA small subunit methyltransferase B [Escherichia sp.
4_1_40B]
gi|386594004|ref|YP_006090404.1| sun protein [Escherichia coli DH1]
gi|386616067|ref|YP_006135733.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
UMNK88]
gi|386706531|ref|YP_006170378.1| Ribosomal RNA small subunit methyltransferase B [Escherichia coli
P12b]
gi|387613964|ref|YP_006117080.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
ETEC H10407]
gi|387622940|ref|YP_006130568.1| 16S rRNA methyltransferase B [Escherichia coli DH1]
gi|388479950|ref|YP_492144.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli str.
K-12 substr. W3110]
gi|404376658|ref|ZP_10981812.1| ribosomal RNA small subunit methyltransferase B [Escherichia sp.
1_1_43]
gi|417264305|ref|ZP_12051699.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
2.3916]
gi|417271488|ref|ZP_12058837.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
2.4168]
gi|417275891|ref|ZP_12063223.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
3.2303]
gi|417291919|ref|ZP_12079200.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
B41]
gi|417614894|ref|ZP_12265348.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
STEC_EH250]
gi|417636378|ref|ZP_12286587.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
STEC_S1191]
gi|417946710|ref|ZP_12589921.1| 16S rRNA methyltransferase B [Escherichia coli XH140A]
gi|417978398|ref|ZP_12619166.1| 16S rRNA methyltransferase B [Escherichia coli XH001]
gi|418304912|ref|ZP_12916706.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
UMNF18]
gi|418956328|ref|ZP_13508256.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
J53]
gi|419144365|ref|ZP_13689095.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC6A]
gi|419150236|ref|ZP_13694884.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC6B]
gi|419157195|ref|ZP_13701729.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC6D]
gi|419166155|ref|ZP_13710606.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC6E]
gi|419176982|ref|ZP_13720793.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC7B]
gi|419813385|ref|ZP_14338233.1| 16S rRNA methyltransferase B [Escherichia coli O32:H37 str. P4]
gi|419940145|ref|ZP_14456899.1| 16S rRNA methyltransferase B [Escherichia coli 75]
gi|421778033|ref|ZP_16214619.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
AD30]
gi|422768924|ref|ZP_16822648.1| ribosomal RNA small methyltransferase B [Escherichia coli E1520]
gi|422773591|ref|ZP_16827275.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
E482]
gi|422788824|ref|ZP_16841559.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
H489]
gi|422793331|ref|ZP_16846027.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TA007]
gi|423702790|ref|ZP_17677222.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
H730]
gi|425116842|ref|ZP_18518631.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
8.0566]
gi|425121592|ref|ZP_18523277.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
8.0569]
gi|425274479|ref|ZP_18665876.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TW15901]
gi|425285058|ref|ZP_18676087.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TW00353]
gi|425307069|ref|ZP_18696748.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
N1]
gi|432366735|ref|ZP_19609852.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE10]
gi|432418810|ref|ZP_19661403.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE44]
gi|432565654|ref|ZP_19802214.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE51]
gi|432577515|ref|ZP_19813964.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE56]
gi|432628916|ref|ZP_19864884.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE77]
gi|432638489|ref|ZP_19874354.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE81]
gi|432662493|ref|ZP_19898127.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE111]
gi|432672372|ref|ZP_19907895.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE119]
gi|432687101|ref|ZP_19922391.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE156]
gi|432688558|ref|ZP_19923828.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE161]
gi|432706022|ref|ZP_19941117.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE171]
gi|432738784|ref|ZP_19973518.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE42]
gi|432877351|ref|ZP_20095071.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE154]
gi|432957139|ref|ZP_20148642.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE197]
gi|433049723|ref|ZP_20237057.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE120]
gi|442592590|ref|ZP_21010564.1| 16S rRNA (cytosine(967)-C(5))-methyltransferase [Escherichia coli
O10:K5(L):H4 str. ATCC 23506]
gi|450251208|ref|ZP_21901756.1| 16S rRNA methyltransferase B [Escherichia coli S17]
gi|1169715|sp|P36929.2|RSMB_ECOLI RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|224493247|sp|B1X6E1.1|RSMB_ECODH RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|224493248|sp|A8A593.1|RSMB_ECOHS RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|224493250|sp|B1IQ11.1|RSMB_ECOLC RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|259495485|sp|C4ZUE3.1|RSMB_ECOBW RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|49259108|pdb|1SQF|A Chain A, The Crystal Structure Of E. Coli Fmu Binary Complex With
S- Adenosylmethionine At 2.1 A Resolution
gi|49259109|pdb|1SQG|A Chain A, The Crystal Structure Of The E. Coli Fmu Apoenzyme At 1.65
A Resolution
gi|1772512|emb|CAA71359.1| sun [Escherichia coli str. K-12 substr. MG1655]
gi|2367212|gb|AAC76314.1| 16S rRNA m(5)C967 methyltransferase, SAM-dependent [Escherichia
coli str. K-12 substr. MG1655]
gi|85676753|dbj|BAE78003.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli str.
K12 substr. W3110]
gi|157068442|gb|ABV07697.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
HS]
gi|169753404|gb|ACA76103.1| sun protein [Escherichia coli ATCC 8739]
gi|169890644|gb|ACB04351.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli str.
K-12 substr. DH10B]
gi|188488402|gb|EDU63505.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
53638]
gi|194421046|gb|EDX37075.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
101-1]
gi|226838955|gb|EEH70978.1| ribosomal RNA small subunit methyltransferase B [Escherichia sp.
1_1_43]
gi|238859734|gb|ACR61732.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli
BW2952]
gi|242378815|emb|CAQ33607.1| 16S rRNA m[5]C967 methyltransferase [Escherichia coli BL21(DE3)]
gi|253322932|gb|ACT27534.1| sun protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|253975117|gb|ACT40788.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli B
str. REL606]
gi|253979273|gb|ACT44943.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli
BL21(DE3)]
gi|260447693|gb|ACX38115.1| sun protein [Escherichia coli DH1]
gi|299881625|gb|EFI89836.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 196-1]
gi|300317770|gb|EFJ67554.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 175-1]
gi|300453816|gb|EFK17436.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 116-1]
gi|300460065|gb|EFK23558.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 187-1]
gi|301077735|gb|EFK92541.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 146-1]
gi|309703700|emb|CBJ03041.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
ETEC H10407]
gi|310334827|gb|EFQ01032.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
1827-70]
gi|315137864|dbj|BAJ45023.1| 16S rRNA methyltransferase B [Escherichia coli DH1]
gi|323934513|gb|EGB30921.1| ribosomal RNA small methyltransferase B [Escherichia coli E1520]
gi|323939290|gb|EGB35502.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
E482]
gi|323959561|gb|EGB55214.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
H489]
gi|323970092|gb|EGB65366.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TA007]
gi|331036278|gb|EGI08504.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
H736]
gi|332345236|gb|AEE58570.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
UMNK88]
gi|339417010|gb|AEJ58682.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
UMNF18]
gi|342361518|gb|EGU25654.1| 16S rRNA methyltransferase B [Escherichia coli XH140A]
gi|344191995|gb|EGV46097.1| 16S rRNA methyltransferase B [Escherichia coli XH001]
gi|345359909|gb|EGW92083.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
STEC_EH250]
gi|345385266|gb|EGX15111.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
STEC_S1191]
gi|359333471|dbj|BAL39918.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli str.
K-12 substr. MDS42]
gi|377989527|gb|EHV52693.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC6B]
gi|377990610|gb|EHV53768.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC6A]
gi|378007639|gb|EHV70607.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC6E]
gi|378016299|gb|EHV79185.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC6D]
gi|378030417|gb|EHV93018.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC7B]
gi|383104699|gb|AFG42208.1| Ribosomal RNA small subunit methyltransferase B [Escherichia coli
P12b]
gi|384381088|gb|EIE38951.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
J53]
gi|385153727|gb|EIF15755.1| 16S rRNA methyltransferase B [Escherichia coli O32:H37 str. P4]
gi|385709524|gb|EIG46521.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
H730]
gi|386120045|gb|EIG68682.1| ribosomal RNA small subunit methyltransferase B [Escherichia sp.
4_1_40B]
gi|386222014|gb|EII44443.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
2.3916]
gi|386235188|gb|EII67164.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
2.4168]
gi|386241142|gb|EII78060.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
3.2303]
gi|386254241|gb|EIJ03931.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
B41]
gi|388404237|gb|EIL64724.1| 16S rRNA methyltransferase B [Escherichia coli 75]
gi|408190912|gb|EKI16539.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TW15901]
gi|408199664|gb|EKI24859.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TW00353]
gi|408226281|gb|EKI49930.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
N1]
gi|408456938|gb|EKJ80743.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
AD30]
gi|408565132|gb|EKK41223.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
8.0566]
gi|408566362|gb|EKK42434.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
8.0569]
gi|430891538|gb|ELC14064.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE10]
gi|430936588|gb|ELC56856.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE44]
gi|431090250|gb|ELD96019.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE51]
gi|431112609|gb|ELE16291.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE56]
gi|431160786|gb|ELE61287.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE77]
gi|431168811|gb|ELE69043.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE81]
gi|431197075|gb|ELE95941.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE111]
gi|431208158|gb|ELF06380.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE119]
gi|431219536|gb|ELF16930.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE156]
gi|431235860|gb|ELF31074.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE161]
gi|431240702|gb|ELF35150.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE171]
gi|431279812|gb|ELF70759.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE42]
gi|431418053|gb|ELH00467.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE154]
gi|431464708|gb|ELH44826.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE197]
gi|431562558|gb|ELI35857.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE120]
gi|441607671|emb|CCP96011.1| 16S rRNA (cytosine(967)-C(5))-methyltransferase [Escherichia coli
O10:K5(L):H4 str. ATCC 23506]
gi|449315684|gb|EMD05821.1| 16S rRNA methyltransferase B [Escherichia coli S17]
Length = 429
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 115/333 (34%), Positives = 198/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LRIN+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|421847960|ref|ZP_16281086.1| 16S rRNA methyltransferase B [Citrobacter freundii ATCC 8090 = MTCC
1658]
gi|411770645|gb|EKS54407.1| 16S rRNA methyltransferase B [Citrobacter freundii ATCC 8090 = MTCC
1658]
Length = 429
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 118/333 (35%), Positives = 189/333 (56%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + + + +P W + ++K YP QW+ IL+ +++P
Sbjct: 117 LINGVLRQFQRRQDELLAE--FAQSDLRFLHPSWLVKRIKAAYPQ--QWEAILEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T ++ LL ++GL P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRNHHTRDAWLDLLSEAGLTGFPHPDYPDAVRLETPAPVHALPGFDEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L +G +LD C APGGKT H+LE+A +++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCVTYLLPENGEQILDLCCAPGGKTTHILEVAPQANVMAVDVDEKRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L + AT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMNATV------------------KQGDGRYPQQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +ILN W LKPGG L++ TCS+ EE+++Q F
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILNATWLHLKPGGTLVYATCSILPEENQQQITAFLARTP 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D++ + PG Q LP +D DGFFY+
Sbjct: 395 DAVLSETGTPEKPGRQNLPGA---EDGDGFFYA 424
>gi|425302148|ref|ZP_18692031.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
07798]
gi|408211315|gb|EKI35863.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
07798]
Length = 420
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 198/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 108 LINGVLRQFQRQQDELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 163
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 164 PMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 223
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 224 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 283
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 284 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 325
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 326 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 385
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 386 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 415
>gi|417619892|ref|ZP_12270298.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
G58-1]
gi|419155755|ref|ZP_13700311.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC6C]
gi|345371983|gb|EGX03951.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
G58-1]
gi|377993432|gb|EHV56564.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC6C]
Length = 420
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 115/333 (34%), Positives = 198/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 108 LINGVLRQFQRQQEELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 163
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LRIN+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 164 PMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 223
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 224 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 283
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 284 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 325
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 326 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTA 385
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 386 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 415
>gi|432487045|ref|ZP_19728953.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE212]
gi|433175169|ref|ZP_20359681.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE232]
gi|431013758|gb|ELD27480.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE212]
gi|431689604|gb|ELJ55107.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE232]
Length = 429
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 115/333 (34%), Positives = 198/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LRIN+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|416344189|ref|ZP_11678063.1| Ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC4100B]
gi|419279925|ref|ZP_13822167.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC10E]
gi|419347036|ref|ZP_13888406.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC13A]
gi|419351497|ref|ZP_13892827.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC13B]
gi|419356969|ref|ZP_13898216.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC13C]
gi|419363205|ref|ZP_13904398.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC13D]
gi|419367098|ref|ZP_13908248.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC13E]
gi|419377353|ref|ZP_13918372.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC14B]
gi|419382691|ref|ZP_13923633.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC14C]
gi|419387995|ref|ZP_13928863.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC14D]
gi|432811010|ref|ZP_20044867.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE101]
gi|320199476|gb|EFW74066.1| Ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC4100B]
gi|378124838|gb|EHW86241.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC10E]
gi|378183748|gb|EHX44389.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC13A]
gi|378195250|gb|EHX55750.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC13D]
gi|378196457|gb|EHX56943.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC13C]
gi|378197341|gb|EHX57822.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC13B]
gi|378210290|gb|EHX70653.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC13E]
gi|378216066|gb|EHX76354.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC14B]
gi|378224632|gb|EHX84833.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC14C]
gi|378228550|gb|EHX88701.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC14D]
gi|431360172|gb|ELG46783.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE101]
Length = 429
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 198/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPSFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|419072812|ref|ZP_13618394.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC3F]
gi|377934588|gb|EHU98416.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC3F]
Length = 454
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 115/333 (34%), Positives = 198/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 142 LINGVLRQFQRQQEELLAE--FNTSDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 197
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LRIN+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 198 PMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 257
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 258 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 317
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 318 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 359
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 360 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 419
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 420 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 449
>gi|90413777|ref|ZP_01221765.1| Putative Sun protein [Photobacterium profundum 3TCK]
gi|90325246|gb|EAS41743.1| Putative Sun protein [Photobacterium profundum 3TCK]
Length = 431
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 118/340 (34%), Positives = 187/340 (55%), Gaps = 36/340 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INAILR + R++ E ++ + + +P W + +K +YP Q + I+ + K
Sbjct: 113 LINAILRNYQRQQ-EQLDAQSVSHDAGKYGHPGWLLKMLKASYPE--QLEAIVTANNTKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTII--GPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N++ T Y LL G+ET + A++L +P +SK+P F +G+ S+QD
Sbjct: 170 PMWLRVNRQHHTRDEYRALLNDVGIETGLHPEAADALRLLSPCDVSKLPGFADGWSSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAQLA L ++ +LD C+APGGKT H++E K++++D + RL + ENL R
Sbjct: 230 GAAQLAVDFLQPQADELILDCCAAPGGKTAHIMERQPTAKVVAIDCDERRLTRVHENLAR 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L AT++ +D ++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 290 LKLDATVLCAD----------------ARYPADWWHGEKFDRILLDAPCSATGVIRRHPD 333
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI+ L+ +I + +W LK GG L++ TCS+ +E+ EQ F D+
Sbjct: 334 IKWLRRASDIEALAILQAEIFDAMWLQLKSGGTLVYATCSITPQENSEQVKAFLARTADA 393
Query: 298 IRLN----------SPG-QLLPTVNKKQDYDGFFYSLFQK 326
+N PG Q+LP + D DGF+Y++ QK
Sbjct: 394 TLINRGQEADSDVEQPGRQILP---GESDMDGFYYAVLQK 430
>gi|293412707|ref|ZP_06655375.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
B354]
gi|301018854|ref|ZP_07183093.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 69-1]
gi|419918768|ref|ZP_14436946.1| 16S rRNA methyltransferase B [Escherichia coli KD2]
gi|432393880|ref|ZP_19636702.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE21]
gi|291468354|gb|EFF10847.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
B354]
gi|300399511|gb|EFJ83049.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 69-1]
gi|388389537|gb|EIL51064.1| 16S rRNA methyltransferase B [Escherichia coli KD2]
gi|430915092|gb|ELC36176.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE21]
Length = 429
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 198/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMSWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|419863992|ref|ZP_14386486.1| 16S rRNA methyltransferase B [Escherichia coli O103:H25 str.
CVM9340]
gi|388341140|gb|EIL07283.1| 16S rRNA methyltransferase B [Escherichia coli O103:H25 str.
CVM9340]
Length = 429
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 198/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPETQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|432618525|ref|ZP_19854629.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE75]
gi|431151576|gb|ELE52589.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE75]
Length = 429
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 198/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRVNRTHHSRDSWLALLDEAGMKGFPPADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|157157639|ref|YP_001464756.1| 16S rRNA methyltransferase GidB [Escherichia coli E24377A]
gi|193066472|ref|ZP_03047516.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
E22]
gi|193071559|ref|ZP_03052468.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
E110019]
gi|194430276|ref|ZP_03062771.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
B171]
gi|209920754|ref|YP_002294838.1| 16S rRNA methyltransferase B [Escherichia coli SE11]
gi|218555846|ref|YP_002388759.1| 16S rRNA methyltransferase B [Escherichia coli IAI1]
gi|218696981|ref|YP_002404648.1| 16S rRNA methyltransferase GidB [Escherichia coli 55989]
gi|260846086|ref|YP_003223864.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli
O103:H2 str. 12009]
gi|293453607|ref|ZP_06664026.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
B088]
gi|300815501|ref|ZP_07095726.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 107-1]
gi|300822908|ref|ZP_07103044.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 119-7]
gi|300918263|ref|ZP_07134867.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 115-1]
gi|300921903|ref|ZP_07138058.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 182-1]
gi|301325146|ref|ZP_07218678.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 78-1]
gi|307315133|ref|ZP_07594716.1| sun protein [Escherichia coli W]
gi|309794564|ref|ZP_07688986.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 145-7]
gi|331670118|ref|ZP_08370957.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TA271]
gi|331679357|ref|ZP_08380027.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
H591]
gi|332281843|ref|ZP_08394256.1| 16S rRNA m5C967 methyltransferase S-adenosyl-L-methionine-dependent
[Shigella sp. D9]
gi|378711272|ref|YP_005276165.1| sun protein [Escherichia coli KO11FL]
gi|386610663|ref|YP_006126149.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli W]
gi|386699758|ref|YP_006163595.1| 16S rRNA methyltransferase B [Escherichia coli KO11FL]
gi|386711181|ref|YP_006174902.1| 16S rRNA methyltransferase B [Escherichia coli W]
gi|407471251|ref|YP_006782306.1| 16S rRNA methyltransferase B [Escherichia coli O104:H4 str.
2009EL-2071]
gi|407480093|ref|YP_006777242.1| 16S rRNA methyltransferase B [Escherichia coli O104:H4 str.
2011C-3493]
gi|410480654|ref|YP_006768200.1| 16S rRNA methyltransferase B [Escherichia coli O104:H4 str.
2009EL-2050]
gi|415795752|ref|ZP_11497265.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
E128010]
gi|415830871|ref|ZP_11516669.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
OK1357]
gi|415879130|ref|ZP_11544590.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 79-10]
gi|417131662|ref|ZP_11976447.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
5.0588]
gi|417141412|ref|ZP_11984325.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
97.0259]
gi|417146886|ref|ZP_11987733.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
1.2264]
gi|417158019|ref|ZP_11995643.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
96.0497]
gi|417163237|ref|ZP_11998567.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
99.0741]
gi|417173882|ref|ZP_12003678.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
3.2608]
gi|417184240|ref|ZP_12009932.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
93.0624]
gi|417220955|ref|ZP_12024395.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
96.154]
gi|417228097|ref|ZP_12029855.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
5.0959]
gi|417249461|ref|ZP_12041245.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
4.0967]
gi|417267735|ref|ZP_12055096.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
3.3884]
gi|417309805|ref|ZP_12096634.1| Ribosomal RNA small subunit methyltransferase B [Escherichia coli
PCN033]
gi|417582896|ref|ZP_12233696.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
STEC_B2F1]
gi|417598683|ref|ZP_12249310.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
3030-1]
gi|417604162|ref|ZP_12254726.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
STEC_94C]
gi|417605413|ref|ZP_12255963.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
STEC_DG131-3]
gi|417668767|ref|ZP_12318307.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
STEC_O31]
gi|417806929|ref|ZP_12453861.1| 16S rRNA methyltransferase B [Escherichia coli O104:H4 str.
LB226692]
gi|417834675|ref|ZP_12481117.1| 16S rRNA methyltransferase B [Escherichia coli O104:H4 str.
01-09591]
gi|417866400|ref|ZP_12511441.1| rsmB [Escherichia coli O104:H4 str. C227-11]
gi|417868520|ref|ZP_12513536.1| rsmB [Escherichia coli O104:H4 str. C227-11]
gi|418040825|ref|ZP_12679058.1| sun protein [Escherichia coli W26]
gi|418942236|ref|ZP_13495524.1| 16S rRNA methyltransferase B [Escherichia coli O157:H43 str. T22]
gi|419296767|ref|ZP_13838804.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC11B]
gi|419302283|ref|ZP_13844275.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC11C]
gi|419308295|ref|ZP_13850188.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC11D]
gi|419313323|ref|ZP_13855181.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC11E]
gi|419318731|ref|ZP_13860529.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC12A]
gi|419324997|ref|ZP_13866684.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC12B]
gi|419330941|ref|ZP_13872537.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC12C]
gi|419336427|ref|ZP_13877944.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC12D]
gi|419341837|ref|ZP_13883292.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC12E]
gi|419371869|ref|ZP_13912978.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC14A]
gi|419393436|ref|ZP_13934237.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC15A]
gi|419398536|ref|ZP_13939298.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC15B]
gi|419403818|ref|ZP_13944537.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC15C]
gi|419408976|ref|ZP_13949661.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC15D]
gi|419414526|ref|ZP_13955162.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC15E]
gi|419872193|ref|ZP_14394234.1| 16S rRNA methyltransferase B [Escherichia coli O103:H2 str.
CVM9450]
gi|419949213|ref|ZP_14465459.1| 16S rRNA methyltransferase B [Escherichia coli CUMT8]
gi|420393397|ref|ZP_14892642.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EPEC C342-62]
gi|422354168|ref|ZP_16434911.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 117-3]
gi|422763833|ref|ZP_16817587.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
E1167]
gi|422778147|ref|ZP_16831798.1| ribosomal RNA small methyltransferase B [Escherichia coli H120]
gi|422960834|ref|ZP_16972027.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
H494]
gi|422989479|ref|ZP_16980251.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. C227-11]
gi|422996374|ref|ZP_16987137.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. C236-11]
gi|423001524|ref|ZP_16992277.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 09-7901]
gi|423005183|ref|ZP_16995928.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 04-8351]
gi|423011689|ref|ZP_17002421.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-3677]
gi|423020916|ref|ZP_17011623.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-4404]
gi|423026081|ref|ZP_17016776.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-4522]
gi|423031900|ref|ZP_17022586.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-4623]
gi|423034772|ref|ZP_17025450.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-4632 C1]
gi|423039900|ref|ZP_17030569.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-4632 C2]
gi|423046584|ref|ZP_17037243.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-4632 C3]
gi|423055121|ref|ZP_17043927.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-4632 C4]
gi|423057113|ref|ZP_17045912.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-4632 C5]
gi|423707575|ref|ZP_17681955.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
B799]
gi|425290426|ref|ZP_18681248.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
3006]
gi|425424165|ref|ZP_18805322.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
0.1288]
gi|429720945|ref|ZP_19255866.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. Ec11-9450]
gi|429772842|ref|ZP_19304860.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-02030]
gi|429778208|ref|ZP_19310176.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-02033-1]
gi|429786514|ref|ZP_19318407.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-02092]
gi|429787458|ref|ZP_19319348.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-02093]
gi|429793254|ref|ZP_19325100.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-02281]
gi|429799834|ref|ZP_19331627.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-02318]
gi|429803449|ref|ZP_19335207.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-02913]
gi|429808090|ref|ZP_19339810.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-03439]
gi|429813790|ref|ZP_19345466.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-04080]
gi|429819000|ref|ZP_19350632.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-03943]
gi|429905349|ref|ZP_19371325.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. Ec11-9990]
gi|429909486|ref|ZP_19375448.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. Ec11-9941]
gi|429915356|ref|ZP_19381302.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. Ec11-4984]
gi|429920403|ref|ZP_19386330.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. Ec11-5604]
gi|429926207|ref|ZP_19392118.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. Ec11-4986]
gi|429930142|ref|ZP_19396042.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. Ec11-4987]
gi|429936680|ref|ZP_19402565.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. Ec11-4988]
gi|429942362|ref|ZP_19408234.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. Ec11-5603]
gi|429945045|ref|ZP_19410905.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. Ec11-6006]
gi|429952600|ref|ZP_19418445.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. Ec12-0465]
gi|429955955|ref|ZP_19421785.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. Ec12-0466]
gi|432378463|ref|ZP_19621446.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE12]
gi|432482609|ref|ZP_19724559.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE210]
gi|432528142|ref|ZP_19765218.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE233]
gi|432535653|ref|ZP_19772612.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE234]
gi|432676405|ref|ZP_19911853.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE142]
gi|432751754|ref|ZP_19986333.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE29]
gi|432766682|ref|ZP_20001097.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE48]
gi|432794500|ref|ZP_20028581.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE78]
gi|432796016|ref|ZP_20030056.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE79]
gi|432807537|ref|ZP_20041451.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE91]
gi|432828913|ref|ZP_20062530.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE135]
gi|432836237|ref|ZP_20069769.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE136]
gi|432854693|ref|ZP_20082964.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE144]
gi|432930659|ref|ZP_20131067.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE184]
gi|432965059|ref|ZP_20153983.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE203]
gi|433093664|ref|ZP_20279920.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE138]
gi|433195323|ref|ZP_20379300.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE90]
gi|450222938|ref|ZP_21896997.1| 16S rRNA methyltransferase B [Escherichia coli O08]
gi|224493245|sp|A7ZSH7.1|RSMB_ECO24 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|254766855|sp|B7LHZ0.1|RSMB_ECO55 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|254766858|sp|B7M0Z4.1|RSMB_ECO8A RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|254766860|sp|B6I202.1|RSMB_ECOSE RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|157079669|gb|ABV19377.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
E24377A]
gi|192925853|gb|EDV80503.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
E22]
gi|192955147|gb|EDV85641.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
E110019]
gi|194411665|gb|EDX27992.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
B171]
gi|209914013|dbj|BAG79087.1| putative rRNA methylase [Escherichia coli SE11]
gi|218353713|emb|CAU99984.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli
55989]
gi|218362614|emb|CAR00240.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli
IAI1]
gi|257761233|dbj|BAI32730.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli
O103:H2 str. 12009]
gi|291321733|gb|EFE61164.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
B088]
gi|300414524|gb|EFJ97834.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 115-1]
gi|300421704|gb|EFK05015.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 182-1]
gi|300524674|gb|EFK45743.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 119-7]
gi|300532393|gb|EFK53455.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 107-1]
gi|300847978|gb|EFK75738.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 78-1]
gi|306905482|gb|EFN36017.1| sun protein [Escherichia coli W]
gi|308121614|gb|EFO58876.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 145-7]
gi|315062580|gb|ADT76907.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli W]
gi|323162967|gb|EFZ48802.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
E128010]
gi|323182767|gb|EFZ68168.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
OK1357]
gi|323376833|gb|ADX49101.1| sun protein [Escherichia coli KO11FL]
gi|323944291|gb|EGB40367.1| ribosomal RNA small methyltransferase B [Escherichia coli H120]
gi|324017855|gb|EGB87074.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 117-3]
gi|324116322|gb|EGC10242.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
E1167]
gi|331062180|gb|EGI34100.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TA271]
gi|331072529|gb|EGI43854.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
H591]
gi|332104195|gb|EGJ07541.1| 16S rRNA m5C967 methyltransferase S-adenosyl-L-methionine-dependent
[Shigella sp. D9]
gi|338768587|gb|EGP23378.1| Ribosomal RNA small subunit methyltransferase B [Escherichia coli
PCN033]
gi|340732819|gb|EGR61955.1| 16S rRNA methyltransferase B [Escherichia coli O104:H4 str.
01-09591]
gi|340738386|gb|EGR72635.1| 16S rRNA methyltransferase B [Escherichia coli O104:H4 str.
LB226692]
gi|341919689|gb|EGT69299.1| rsmB [Escherichia coli O104:H4 str. C227-11]
gi|341921807|gb|EGT71394.1| rsmB [Escherichia coli O104:H4 str. C227-11]
gi|342927009|gb|EGU95731.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 79-10]
gi|345334676|gb|EGW67117.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
STEC_B2F1]
gi|345347530|gb|EGW79834.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
STEC_94C]
gi|345349554|gb|EGW81835.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
3030-1]
gi|345367520|gb|EGW99561.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
STEC_DG131-3]
gi|354858614|gb|EHF19063.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. C236-11]
gi|354863068|gb|EHF23502.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. C227-11]
gi|354863958|gb|EHF24388.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 04-8351]
gi|354871103|gb|EHF31501.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 09-7901]
gi|354877641|gb|EHF37999.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-3677]
gi|354886542|gb|EHF46824.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-4404]
gi|354890434|gb|EHF50673.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-4522]
gi|354894755|gb|EHF54945.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-4623]
gi|354906560|gb|EHF66634.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-4632 C1]
gi|354909203|gb|EHF69236.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-4632 C2]
gi|354911188|gb|EHF71193.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-4632 C3]
gi|354913961|gb|EHF73946.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-4632 C4]
gi|354921639|gb|EHF81560.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-4632 C5]
gi|371593613|gb|EHN82491.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
H494]
gi|375322425|gb|EHS68182.1| 16S rRNA methyltransferase B [Escherichia coli O157:H43 str. T22]
gi|378138988|gb|EHX00237.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC11B]
gi|378145544|gb|EHX06706.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC11D]
gi|378146854|gb|EHX08003.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC11C]
gi|378155242|gb|EHX16301.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC11E]
gi|378162340|gb|EHX23304.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC12B]
gi|378166153|gb|EHX27079.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC12A]
gi|378166875|gb|EHX27793.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC12C]
gi|378179651|gb|EHX40359.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC12D]
gi|378183918|gb|EHX44557.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC12E]
gi|378213496|gb|EHX73808.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC14A]
gi|378235102|gb|EHX95174.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC15A]
gi|378240438|gb|EHY00408.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC15B]
gi|378244909|gb|EHY04850.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC15C]
gi|378252772|gb|EHY12658.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC15D]
gi|378257302|gb|EHY17142.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC15E]
gi|383391285|gb|AFH16243.1| 16S rRNA methyltransferase B [Escherichia coli KO11FL]
gi|383406873|gb|AFH13116.1| 16S rRNA methyltransferase B [Escherichia coli W]
gi|383476273|gb|EID68219.1| sun protein [Escherichia coli W26]
gi|385709726|gb|EIG46722.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
B799]
gi|386149516|gb|EIH00805.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
5.0588]
gi|386155902|gb|EIH12252.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
97.0259]
gi|386162826|gb|EIH24622.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
1.2264]
gi|386166769|gb|EIH33289.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
96.0497]
gi|386173728|gb|EIH45740.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
99.0741]
gi|386176574|gb|EIH54053.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
3.2608]
gi|386183802|gb|EIH66549.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
93.0624]
gi|386200757|gb|EIH99747.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
96.154]
gi|386207432|gb|EII11937.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
5.0959]
gi|386219782|gb|EII36246.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
4.0967]
gi|386230093|gb|EII57448.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
3.3884]
gi|388335311|gb|EIL01880.1| 16S rRNA methyltransferase B [Escherichia coli O103:H2 str.
CVM9450]
gi|388419338|gb|EIL79080.1| 16S rRNA methyltransferase B [Escherichia coli CUMT8]
gi|391310238|gb|EIQ67893.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EPEC C342-62]
gi|397783633|gb|EJK94491.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
STEC_O31]
gi|406775816|gb|AFS55240.1| 16S rRNA methyltransferase B [Escherichia coli O104:H4 str.
2009EL-2050]
gi|407052390|gb|AFS72441.1| 16S rRNA methyltransferase B [Escherichia coli O104:H4 str.
2011C-3493]
gi|407067286|gb|AFS88333.1| 16S rRNA methyltransferase B [Escherichia coli O104:H4 str.
2009EL-2071]
gi|408210422|gb|EKI34986.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
3006]
gi|408341602|gb|EKJ56046.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
0.1288]
gi|429346686|gb|EKY83465.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-02092]
gi|429356665|gb|EKY93340.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-02033-1]
gi|429357540|gb|EKY94213.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-02030]
gi|429372832|gb|EKZ09381.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-02093]
gi|429374773|gb|EKZ11312.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-02281]
gi|429377403|gb|EKZ13924.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-02318]
gi|429388635|gb|EKZ25060.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-02913]
gi|429391404|gb|EKZ27808.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-03439]
gi|429392413|gb|EKZ28814.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-03943]
gi|429401934|gb|EKZ38227.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-04080]
gi|429402987|gb|EKZ39272.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. Ec11-9990]
gi|429406614|gb|EKZ42869.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. Ec11-9450]
gi|429414655|gb|EKZ50829.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. Ec11-4984]
gi|429418125|gb|EKZ54271.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. Ec11-4986]
gi|429424417|gb|EKZ60518.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. Ec11-4987]
gi|429428220|gb|EKZ64296.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. Ec11-4988]
gi|429433277|gb|EKZ69310.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. Ec11-5603]
gi|429440237|gb|EKZ76215.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. Ec11-5604]
gi|429445135|gb|EKZ81077.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. Ec12-0465]
gi|429449076|gb|EKZ84978.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. Ec11-6006]
gi|429454727|gb|EKZ90585.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. Ec12-0466]
gi|429458834|gb|EKZ94654.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. Ec11-9941]
gi|430896097|gb|ELC18341.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE12]
gi|431004225|gb|ELD19451.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE210]
gi|431057894|gb|ELD67304.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE234]
gi|431060765|gb|ELD70087.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE233]
gi|431211633|gb|ELF09594.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE142]
gi|431293694|gb|ELF83977.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE29]
gi|431307279|gb|ELF95571.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE48]
gi|431336984|gb|ELG24078.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE78]
gi|431349237|gb|ELG36078.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE79]
gi|431352978|gb|ELG39736.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE91]
gi|431382338|gb|ELG66676.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE136]
gi|431382985|gb|ELG67126.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE135]
gi|431397775|gb|ELG81207.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE144]
gi|431460710|gb|ELH40995.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE184]
gi|431477174|gb|ELH56944.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE203]
gi|431608021|gb|ELI77373.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE138]
gi|431713602|gb|ELJ77829.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE90]
gi|449314431|gb|EMD04597.1| 16S rRNA methyltransferase B [Escherichia coli O08]
Length = 429
Score = 211 bits (536), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 198/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|455644208|gb|EMF23313.1| 16S rRNA methyltransferase B [Citrobacter freundii GTC 09479]
Length = 429
Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 118/333 (35%), Positives = 189/333 (56%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + + + +P W + ++K YP QW+ IL+ +++P
Sbjct: 117 LINGVLRQFQRRQDELLTE--FAQSDLRFLHPSWLVKRIKSAYPQ--QWEAILEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T ++ LL +GL P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRNHHTRDAWIDLLTAAGLTGFPHPDYPDAVRLETPAPVHALPGFDEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L + G +LD C APGGKT H+LE+A +++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCVKYLLPKDGEQILDLCCAPGGKTTHILEVAPQANVMAVDVDEKRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KA++ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKASV------------------KQGDGRYPQQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +ILN W LKPGG L++ TCS+ EE+++Q F
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILNATWLHLKPGGTLVYATCSILPEENQQQITAFLARTP 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D++ + PG Q LP +D DGFFY+
Sbjct: 395 DAVLSETGTPEKPGRQNLPGA---EDGDGFFYA 424
>gi|415776513|ref|ZP_11488034.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
3431]
gi|315617091|gb|EFU97701.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
3431]
Length = 429
Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 115/333 (34%), Positives = 198/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FNASDARYLHPSWLLKRLQKAYPK--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LRIN+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|423122395|ref|ZP_17110079.1| ribosomal RNA small subunit methyltransferase B [Klebsiella oxytoca
10-5246]
gi|376392212|gb|EHT04877.1| ribosomal RNA small subunit methyltransferase B [Klebsiella oxytoca
10-5246]
Length = 431
Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 120/340 (35%), Positives = 199/340 (58%), Gaps = 37/340 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + ES + +P W + +++ ++P QW+ I+D +++P
Sbjct: 117 LINGVLRQFQRQQEALLAE--FAQSESRFLHPAWLLKRLQKSWPQ--QWQAIVDANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLE--TTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + + LL+++GL T P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRSHHSRDEWLALLEEAGLHGFTHPDYPDAVRLATPAPVQALPGFDQGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L +G +LD C+APGGKT H+LE+A +++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMRYLTPENGERILDLCAAPGGKTTHILEVAPQASVLAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KA + K+ + R+ ++ +++ FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKAQV------------------KQGDGRYPAQWCEDEQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LKPGG L++ TCS+ EE+ +Q F K
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILDAIWPHLKPGGTLVYATCSILPEENSQQIAAFLKRTP 394
Query: 296 DS-IRLNS----PG-QLLPTVNKKQDYDGFFYS-LFQKRK 328
D+ + L PG Q LP ++ DGFFY+ L + RK
Sbjct: 395 DAELSLTGTPEQPGVQNLPGA---EEGDGFFYAKLIKHRK 431
>gi|372275657|ref|ZP_09511693.1| 16S rRNA methyltransferase B [Pantoea sp. SL1_M5]
Length = 433
Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 112/330 (33%), Positives = 195/330 (59%), Gaps = 30/330 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++N +LR+F R++ E+ + + + + Y +P W + +++ +P QW+ I++ + +P
Sbjct: 117 LLNGVLRQFQRQREELLAT-VQDGPQRYL-HPGWLLKRLQHAWPE--QWQQIVEANNLRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSG--LETTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N++ ++ +L +SG + + P A++L P +S++P F G+ ++QD
Sbjct: 173 PMWLRVNRQHHDRDTWLAMLAESGRNAQPAVDVPDALRLDAPAPVSQLPGFDQGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
+AQ A LL+ ++G +LD C+APGGKT H+LEIA ++I+VD + RL ++ENL+R
Sbjct: 233 LSAQRCALLLEPQNGEQILDLCAAPGGKTTHILEIAPQAEVIAVDVDAQRLKRVNENLQR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KA + K+ + R ++ ++ FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKADV------------------KQGDGRTPQQWCGDRQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L+K +IL+ +W LKPGG L++ TCS+ EE+ +Q F +
Sbjct: 335 PDIKWLRRDRDIAELAKLQGEILDAIWPHLKPGGTLIYATCSILPEENHQQIDAFLQRQH 394
Query: 296 DSIRL---NSPGQLLPTVNKKQDYDGFFYS 322
D+ ++P L + + DGFFY+
Sbjct: 395 DAQAEPLGDAPANGLQVFPEAEGGDGFFYA 424
>gi|253690152|ref|YP_003019342.1| sun protein [Pectobacterium carotovorum subsp. carotovorum PC1]
gi|259495486|sp|C6DFR7.1|RSMB_PECCP RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|251756730|gb|ACT14806.1| sun protein [Pectobacterium carotovorum subsp. carotovorum PC1]
Length = 429
Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 113/333 (33%), Positives = 191/333 (57%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + + H S++ +P W + +++ YPN W+ I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELIQREAN--HSSHYLHPSWLLARIEHAYPN--HWQTIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T +Y LL + G+E AI+L +P ++ ++P F G+ ++QD
Sbjct: 173 PMWLRVNRLHHTREAYLNLLAQEGIEAFPHTEFTDAIRLASPCAVDQLPGFSQGWATVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LD + G +LD C+APGGKT H+LE A +++VD + +RL + ENL R
Sbjct: 233 ASAQGCVYWLDPQDGEQILDLCAAPGGKTTHILEAAPQSHVLAVDIDETRLGRVKENLLR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L + A + K+ + R+ + + + FDRIL D PC+ +GV+RR+
Sbjct: 293 LQMHAEV------------------KQGDGRYPDSWCEGRMFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI++L +I + +W LK GG +++ TCS+ +E+ +Q F H
Sbjct: 335 PDIKWLRRDRDIEELVALQKEIFDAIWPHLKVGGTMVYATCSILPQENAQQVTDFLTRHA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ +++ PG Q+LP + DGFFY+
Sbjct: 395 DATLVDTGTRELPGIQMLPHADGG---DGFFYA 424
>gi|418515110|ref|ZP_13081298.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Pomona str. ATCC 10729]
gi|366077149|gb|EHN41169.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Pomona str. ATCC 10729]
Length = 429
Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 112/332 (33%), Positives = 194/332 (58%), Gaps = 34/332 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + ++ + +P W + +++ YP QW+ I++ +++P
Sbjct: 117 LINGVLRQFQRQQETLLNE--FATSDARFLHPGWLVKRLQNAYPT--QWQRIIEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T + LL+ +G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ A L ++G ++LD C+APGGKT H+LE+A + +++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEAYVLAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LKPGG L++ TCS+ EE+ +Q F +
Sbjct: 335 PDIKWLRRDRDIAELTQLQAEILDAVWPRLKPGGTLVYATCSILPEENRDQIKAFLQRTP 394
Query: 296 DSI-----RLNSPGQLLPTVNKKQDYDGFFYS 322
D+ + PGQ + ++ DGFFY+
Sbjct: 395 DAALSETGTPDQPGQQ--NLPGGEEGDGFFYA 424
>gi|387812477|ref|YP_005427954.1| 16S rRNA m5C967 methyltransferase [Marinobacter
hydrocarbonoclasticus ATCC 49840]
gi|381337484|emb|CCG93531.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Marinobacter
hydrocarbonoclasticus ATCC 49840]
Length = 433
Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 111/340 (32%), Positives = 190/340 (55%), Gaps = 40/340 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++N +LR R+ K +++P+W + +++ +P+ W+ IL+ +++
Sbjct: 117 LVNGVLRAAEREGAPAPKDD-----SGRFSHPVWMVEKLRHNWPD--DWQAILEANNQQA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLET--TIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+TLR+N + Y LL ++G+E T P I+L P+ + ++P F +G S+QD
Sbjct: 170 PMTLRVNALRFKRDEYLNLLSEAGIEARATRFAPSGIQLQRPVPVDRLPWFEDGAVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADI--KLISVDNNLSRLNMISENLK 176
AAQL L+D++ G VLDAC+APGGKTC +LE +++++D + RL + ENL
Sbjct: 230 EAAQLCTTLMDLQPGQRVLDACAAPGGKTCAILEACGALDEVVAIDESAERLPRVQENLD 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL+L+ATL +D + I+ ++ FDRIL D+PC+ +GV+RR+P
Sbjct: 290 RLDLQATLTQADAADID----------------SWWDGTPFDRILLDVPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEE----------SEEQ 286
DI LRR++DI L+ +L +W +LKPGG+L++ TCS++ +E + Q
Sbjct: 334 DIKLLRRESDIVPLASIQLGLLEAMWSILKPGGRLVYATCSVFPQENHRIIQRFLKQQNQ 393
Query: 287 AIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 326
A + + + + + QL P + +DGFFY++ +K
Sbjct: 394 ATLKTIDADWGRDMTTGRQLFPDPDS---HDGFFYAVLEK 430
>gi|419138550|ref|ZP_13683340.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC5E]
gi|377980674|gb|EHV43934.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC5E]
Length = 429
Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 115/333 (34%), Positives = 198/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FNTSDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LRIN+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENGLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|390436441|ref|ZP_10224979.1| 16S rRNA methyltransferase B [Pantoea agglomerans IG1]
Length = 433
Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 113/331 (34%), Positives = 198/331 (59%), Gaps = 32/331 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++N +LR+F R++ E+ + + + + Y +P W + +++ +P QW+ I++ + +P
Sbjct: 117 LLNGVLRQFQRQREELLAT-VQDGPQRYL-HPGWLLKRLQHAWPE--QWQQIVEANNLRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSG--LETTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N++ ++ +L +SG + T+ P A++L P +S++P F G+ ++QD
Sbjct: 173 PMWLRVNRQHHDRDTWLAMLAESGRNAQPTVDVPDALRLDAPAPVSQLPGFDQGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
+AQ A LL+ ++G +LD C+APGGKT H+LEIA ++++VD + RL ++ENL+R
Sbjct: 233 LSAQRCALLLEPQNGEQILDLCAAPGGKTTHILEIAPQAEVMAVDVDAQRLKRVNENLQR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KA + K+ + R ++ ++ FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKADV------------------KQGDGRTPQQWCGDRQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L+K +IL+ +W LKPGG L++ TCS+ EE+ +Q F +
Sbjct: 335 PDIKWLRRDRDIAELAKLQGEILDAIWLHLKPGGTLIYATCSILPEENHQQIDAFLQRQH 394
Query: 296 DS----IRLNSPGQLLPTVNKKQDYDGFFYS 322
D+ +R ++P L + + DGFFY+
Sbjct: 395 DAQAEPLR-DAPANGLQVFPEAEGGDGFFYA 424
>gi|300903537|ref|ZP_07121459.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 84-1]
gi|301305498|ref|ZP_07211590.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 124-1]
gi|415862911|ref|ZP_11536272.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 85-1]
gi|419172120|ref|ZP_13715999.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC7A]
gi|419182682|ref|ZP_13726291.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC7C]
gi|419188301|ref|ZP_13731807.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC7D]
gi|419193429|ref|ZP_13736874.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC7E]
gi|420387529|ref|ZP_14886869.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EPECa12]
gi|427806481|ref|ZP_18973548.1| hypothetical protein BN16_39191 [Escherichia coli chi7122]
gi|427811071|ref|ZP_18978136.1| hypothetical protein BN17_32221 [Escherichia coli]
gi|433136524|ref|ZP_20321856.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE166]
gi|443619351|ref|YP_007383207.1| 16S rRNA methyltransferase B [Escherichia coli APEC O78]
gi|300404410|gb|EFJ87948.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 84-1]
gi|300839193|gb|EFK66953.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 124-1]
gi|315255872|gb|EFU35840.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 85-1]
gi|378012858|gb|EHV75785.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC7A]
gi|378021454|gb|EHV84156.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC7C]
gi|378025241|gb|EHV87885.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC7D]
gi|378035808|gb|EHV98360.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC7E]
gi|391302883|gb|EIQ60729.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EPECa12]
gi|412964663|emb|CCK48592.1| hypothetical protein BN16_39191 [Escherichia coli chi7122]
gi|412971250|emb|CCJ45905.1| hypothetical protein BN17_32221 [Escherichia coli]
gi|431654073|gb|ELJ21144.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE166]
gi|443423859|gb|AGC88763.1| 16S rRNA methyltransferase B [Escherichia coli APEC O78]
Length = 429
Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 198/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGT---EEGDGFFYA 424
>gi|444354432|ref|YP_007390576.1| Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-)
[Enterobacter aerogenes EA1509E]
gi|443905262|emb|CCG33036.1| Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-)
[Enterobacter aerogenes EA1509E]
Length = 431
Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 119/339 (35%), Positives = 196/339 (57%), Gaps = 37/339 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + HE+ + +P W + +++ +P QW++I+ + +P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FAQHENRYLHPKWLLKRLQQAWPQ--QWQDIVSANNLRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLE--TTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + + LL+ +GL+ T P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRNHHSRDEWLALLEDAGLQGFTHPDYPDAVRLATPAPVHALPGFDKGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L +G +LD C+APGGKT H+LE+A L++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMRYLQPANGERILDLCAAPGGKTTHILEVAPQASLMAVDIDQQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KA + K+ + R+ ++ ++ FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKAEV------------------KQGDGRYPEQWCGDEQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ W LKPGG L++ TCS+ EE+ +Q F +
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILDATWAHLKPGGTLVYATCSILPEENSQQIAAFLTRTR 394
Query: 296 DSI-----RLNSPGQL-LPTVNKKQDYDGFFYS-LFQKR 327
D+ +PGQ LP ++ DGFFY+ L +KR
Sbjct: 395 DAELHETGTPETPGQQNLPGA---EEGDGFFYAKLIKKR 430
>gi|433131836|ref|ZP_20317265.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE163]
gi|431643913|gb|ELJ11601.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE163]
Length = 429
Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 198/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPYLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGT---EEGDGFFYA 424
>gi|415810457|ref|ZP_11502824.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
LT-68]
gi|323173925|gb|EFZ59553.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
LT-68]
Length = 429
Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 198/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|425244944|ref|ZP_18638245.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MA6]
gi|408158135|gb|EKH86263.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MA6]
Length = 429
Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 198/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FNTSDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LRIN+ + ++ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRINRTHHSRDTWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQADGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|293393280|ref|ZP_06637594.1| RNA methyltransferase Sun [Serratia odorifera DSM 4582]
gi|291424190|gb|EFE97405.1| RNA methyltransferase Sun [Serratia odorifera DSM 4582]
Length = 429
Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 107/305 (35%), Positives = 182/305 (59%), Gaps = 28/305 (9%)
Query: 26 ESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPPLTLRINQRKTTLISYNKLLKKSGL 85
+S + +P W + +++ YP QW++I++ ++KPP+ LR+N+ T Y KL++++G+
Sbjct: 140 DSRYLHPSWLLKRIQQAYPE--QWEHIVEANNQKPPMWLRVNRLHHTRDEYLKLMEQAGI 197
Query: 86 ETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAP 143
A++L +P +++++P F G+ ++QDA+AQ LLD + G +LD C+AP
Sbjct: 198 AAAPHAEYRDALRLLSPCAVNELPGFAEGWVTVQDASAQGCVDLLDPQDGEQILDLCAAP 257
Query: 144 GGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDIN 202
GGKT H+LE A +++VD + RL+ ++ENL+RL A +
Sbjct: 258 GGKTTHILEAAPKAHVMAVDIDEQRLSRVNENLQRLRFSAEV------------------ 299
Query: 203 KKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNN 260
K+ + R ++ +K FDRIL D PC+ +GV+RR+PDI WLRR DI +L+ +I++
Sbjct: 300 KQGDGRTPQQWCGDKQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELASLQAEIMDA 359
Query: 261 LWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLP---TVNKKQDYD 317
+W LKPGG +++ TCS+ +E+ EQ + F + H D+ R+ + Q P + +D D
Sbjct: 360 IWPHLKPGGVMVYATCSILPQENNEQVLAFLQRHADAQRVETGKQHQPGRQNLPHPEDGD 419
Query: 318 GFFYS 322
GFFY+
Sbjct: 420 GFFYA 424
>gi|422831894|ref|ZP_16880025.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
B093]
gi|371615976|gb|EHO04352.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
B093]
Length = 429
Score = 210 bits (535), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 197/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQDELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL ++G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHVLPGFEEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMAWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQVKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|417691632|ref|ZP_12340841.1| ribosomal RNA small subunit methyltransferase B [Shigella boydii
5216-82]
gi|332085437|gb|EGI90603.1| ribosomal RNA small subunit methyltransferase B [Shigella boydii
5216-82]
Length = 429
Score = 210 bits (535), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 112/330 (33%), Positives = 195/330 (59%), Gaps = 30/330 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRRQEELLAE--FNTSDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LRIN+ + + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRINRTQHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYANLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GVVRR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVVRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNSPGQLLPTVNKK---QDYDGFFYS 322
D+ + P + ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNQPGAEEGDGFFYA 424
>gi|419806439|ref|ZP_14331546.1| sun protein [Escherichia coli AI27]
gi|384470596|gb|EIE54700.1| sun protein [Escherichia coli AI27]
Length = 429
Score = 210 bits (535), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 198/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVFDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|421882970|ref|ZP_16314218.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Senftenberg str. SS209]
gi|379987478|emb|CCF86491.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Senftenberg str. SS209]
Length = 429
Score = 210 bits (535), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 111/332 (33%), Positives = 193/332 (58%), Gaps = 34/332 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + ++ + +P W + +++ YP QW+ I++ +++P
Sbjct: 117 LINGVLRQFQRQQETLLNE--FATSDARFLHPGWLVKRLQNAYPT--QWQRIIEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T + LL+ +G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
+AQ A L ++G ++LD C+APGGKT H+LE+A + +++VD + RL+ + +NLKR
Sbjct: 233 VSAQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LKPGG L++ TCS+ EE+ +Q F +
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKTFLQRTP 394
Query: 296 DSI-----RLNSPGQLLPTVNKKQDYDGFFYS 322
D+ + PGQ + ++ DGFFY+
Sbjct: 395 DAALSETGTPDQPGQQ--NLPGGEEGDGFFYA 424
>gi|417641188|ref|ZP_12291320.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TX1999]
gi|345391490|gb|EGX21279.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TX1999]
Length = 420
Score = 210 bits (535), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 198/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 108 LINGVLRQFQRQQEELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 163
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 164 PMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 223
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 224 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 283
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 284 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 325
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 326 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 385
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 386 DAELCETGTPEQPGKQNLPGT---EEGDGFFYA 415
>gi|336247455|ref|YP_004591165.1| 16S rRNA methyltransferase B [Enterobacter aerogenes KCTC 2190]
gi|334733511|gb|AEG95886.1| 16S rRNA methyltransferase B [Enterobacter aerogenes KCTC 2190]
Length = 431
Score = 210 bits (535), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 119/339 (35%), Positives = 196/339 (57%), Gaps = 37/339 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + HE+ + +P W + +++ +P QW++I+ + +P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FAQHENRYLHPKWLLKRLQQAWPQ--QWQDIVSANNLRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLE--TTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + + LL+ +GL+ T P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRNHHSRDEWLALLEDAGLQGFTHPDYPDAVRLATPAPVHALPGFDKGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L +G +LD C+APGGKT H+LE+A L++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMRYLQPANGERILDLCAAPGGKTTHILEVAPQASLMAVDIDQQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KA + K+ + R+ ++ ++ FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKAEV------------------KQGDGRYPEQWCGDEQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ W LKPGG L++ TCS+ EE+ +Q F +
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILDATWAHLKPGGTLVYATCSILPEENSQQIAAFLTRTQ 394
Query: 296 DSI-----RLNSPGQL-LPTVNKKQDYDGFFYS-LFQKR 327
D+ +PGQ LP ++ DGFFY+ L +KR
Sbjct: 395 DAELHETGTPETPGQQNLPGA---EEGDGFFYAKLIKKR 430
>gi|392980964|ref|YP_006479552.1| 16S rRNA methyltransferase B [Enterobacter cloacae subsp.
dissolvens SDM]
gi|392326897|gb|AFM61850.1| 16S rRNA methyltransferase B [Enterobacter cloacae subsp.
dissolvens SDM]
Length = 428
Score = 210 bits (535), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 115/331 (34%), Positives = 191/331 (57%), Gaps = 32/331 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + E+ + +P W +N++K YP +W+ I + +++P
Sbjct: 116 LINGVLRQFQRQQEELLAE--FEQSETRFLHPDWLLNRLKKAYPQ--RWQEIAEANNQRP 171
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLE--TTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T ++ LL+++G+ T P A++L +P+ + +P F G+ ++QD
Sbjct: 172 PMWLRVNRNHHTRDAWLALLEEAGMSGFTHDAYPDAVRLASPVPVHALPGFDEGWVTVQD 231
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L+ ++G +LD C+APGGKT H+LE+A +++VD + RL+ + +NLKR
Sbjct: 232 ASAQGCMTWLEPKNGEQILDLCAAPGGKTTHILEVAPQANVMAVDVDEQRLSRVYDNLKR 291
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L +KA + D K + FDRIL D PC+ +GV+RR+PD
Sbjct: 292 LGMKAQVKQGDGRKPA----------------EWCGETQFDRILLDAPCSATGVIRRHPD 335
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH--- 294
I WLRR DIK+L++ +IL+ +W LKP G L++ TCS+ EE+ +Q F K
Sbjct: 336 IKWLRRDRDIKELAQLQSEILDAIWPHLKPSGTLVYATCSILPEENSQQISAFLKRTPGA 395
Query: 295 --KDSIRLNSPGQL-LPTVNKKQDYDGFFYS 322
+++ PGQ LP ++ DGFFY+
Sbjct: 396 TLRETGTPEHPGQQNLPGA---EEGDGFFYA 423
>gi|417127397|ref|ZP_11974888.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
97.0246]
gi|386144700|gb|EIG91166.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
97.0246]
Length = 429
Score = 210 bits (535), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 113/333 (33%), Positives = 198/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FNTSDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVHDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ ++L+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEMLDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|432767647|ref|ZP_20002040.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE50]
gi|432963804|ref|ZP_20153151.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE202]
gi|433064729|ref|ZP_20251639.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE125]
gi|431322066|gb|ELG09654.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE50]
gi|431470331|gb|ELH50253.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE202]
gi|431578775|gb|ELI51365.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE125]
Length = 429
Score = 210 bits (535), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 197/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLE--TTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL ++G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHSRDSWLALLDEAGMKGFPHADSPDAVRLETPAPVHVLPGFEEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMAWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|416336396|ref|ZP_11672959.1| Ribosomal RNA small subunit methyltransferase B [Escherichia coli
WV_060327]
gi|320195380|gb|EFW70007.1| Ribosomal RNA small subunit methyltransferase B [Escherichia coli
WV_060327]
Length = 429
Score = 210 bits (535), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 198/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGKQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|432870774|ref|ZP_20091194.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE147]
gi|431408759|gb|ELG91941.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE147]
Length = 429
Score = 210 bits (535), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 197/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ + + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSHWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|215488588|ref|YP_002331019.1| 16S rRNA methyltransferase GidB [Escherichia coli O127:H6 str.
E2348/69]
gi|312968386|ref|ZP_07782596.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
2362-75]
gi|415839119|ref|ZP_11520937.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
RN587/1]
gi|417281710|ref|ZP_12069010.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
3003]
gi|417757632|ref|ZP_12405697.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC2B]
gi|418998668|ref|ZP_13546252.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC1A]
gi|419004007|ref|ZP_13551519.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC1B]
gi|419009681|ref|ZP_13557099.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC1C]
gi|419015266|ref|ZP_13562605.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC1D]
gi|419020311|ref|ZP_13567610.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC1E]
gi|419025775|ref|ZP_13572994.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC2A]
gi|419030905|ref|ZP_13578053.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC2C]
gi|419036550|ref|ZP_13583626.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC2D]
gi|419041609|ref|ZP_13588627.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC2E]
gi|425279676|ref|ZP_18670902.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
ARS4.2123]
gi|254766853|sp|B7UK12.1|RSMB_ECO27 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|215266660|emb|CAS11099.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli
O127:H6 str. E2348/69]
gi|312287211|gb|EFR15121.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
2362-75]
gi|323189106|gb|EFZ74390.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
RN587/1]
gi|377840292|gb|EHU05366.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC1A]
gi|377840458|gb|EHU05530.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC1C]
gi|377843013|gb|EHU08054.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC1B]
gi|377854262|gb|EHU19149.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC1D]
gi|377857312|gb|EHU22164.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC1E]
gi|377860487|gb|EHU25312.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC2A]
gi|377871283|gb|EHU35947.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC2B]
gi|377874181|gb|EHU38811.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC2C]
gi|377876303|gb|EHU40910.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC2D]
gi|377886783|gb|EHU51262.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC2E]
gi|386246039|gb|EII87769.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
3003]
gi|408198746|gb|EKI23962.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
ARS4.2123]
Length = 429
Score = 210 bits (535), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 198/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGKQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|163803318|ref|ZP_02197196.1| methionyl-tRNA formyltransferase [Vibrio sp. AND4]
gi|159172888|gb|EDP57727.1| methionyl-tRNA formyltransferase [Vibrio sp. AND4]
Length = 427
Score = 210 bits (534), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 118/335 (35%), Positives = 194/335 (57%), Gaps = 30/335 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R + E+ + + N Y +P W + ++ YP QW++I++ ++K
Sbjct: 113 LINAVLRNYQRSQEELDQMAVSNNAGKY-GHPSWLLKLLQEAYPQ--QWESIVEANNQKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + T Y LLK +++T A+KL P + +P F G+ S+QD
Sbjct: 170 PMWLRVNHQHHTRDEYLALLKNENIDSTPHSQAMDALKLAAPCDVMTLPGFEKGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQL+ L+ + G +LD C+APGGKT H+LE + +++++D + +RL + ENLKR
Sbjct: 230 AAAQLSINYLEPKDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKR 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
LNL+A ++ D + +++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 290 LNLQAKVVCGD----------------ARHPQEWWQGEQFDRILLDAPCSATGVIRRHPD 333
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI L+ +I + +W LKPGG +++ TCS+ +E+ EQ F D+
Sbjct: 334 IKWLRRADDIAALAALQSEIFDAMWTQLKPGGTMVYATCSITPQENVEQVKAFLARTADA 393
Query: 298 IRLNS----PG-QLLPTVNKKQDYDGFFYSLFQKR 327
++S PG Q+LP ++D DGF+Y++ K+
Sbjct: 394 QLVDSEPHQPGRQILPG---EEDMDGFYYAVLTKK 425
>gi|82545651|ref|YP_409598.1| 16S rRNA methyltransferase B [Shigella boydii Sb227]
gi|416272757|ref|ZP_11643240.1| Ribosomal RNA small subunit methyltransferase B [Shigella
dysenteriae CDC 74-1112]
gi|420354785|ref|ZP_14855864.1| ribosomal RNA small subunit methyltransferase B [Shigella boydii
4444-74]
gi|420382524|ref|ZP_14881959.1| ribosomal RNA small subunit methyltransferase B [Shigella
dysenteriae 225-75]
gi|421685419|ref|ZP_16125195.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
1485-80]
gi|123728324|sp|Q31VY8.1|RSMB_SHIBS RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|81247062|gb|ABB67770.1| conserved hypothetical protein [Shigella boydii Sb227]
gi|320173933|gb|EFW49109.1| Ribosomal RNA small subunit methyltransferase B [Shigella
dysenteriae CDC 74-1112]
gi|391274472|gb|EIQ33280.1| ribosomal RNA small subunit methyltransferase B [Shigella boydii
4444-74]
gi|391298671|gb|EIQ56671.1| ribosomal RNA small subunit methyltransferase B [Shigella
dysenteriae 225-75]
gi|404334907|gb|EJZ61383.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
1485-80]
Length = 429
Score = 210 bits (534), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 198/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAK--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|331654881|ref|ZP_08355880.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
M718]
gi|422836856|ref|ZP_16884890.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
E101]
gi|331046896|gb|EGI18974.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
M718]
gi|371606970|gb|EHN95555.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
E101]
Length = 429
Score = 210 bits (534), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 115/333 (34%), Positives = 198/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FNTSDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LRIN+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVLAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|374333834|ref|YP_005090521.1| 16S rRNA methyltransferase B [Oceanimonas sp. GK1]
gi|372983521|gb|AEX99770.1| 16S rRNA methyltransferase B [Oceanimonas sp. GK1]
Length = 431
Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 121/340 (35%), Positives = 196/340 (57%), Gaps = 35/340 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++N +LR R++ E+ ++K + + +P W + +++ YP+ QW+ I+ ++ P
Sbjct: 113 LVNGVLRNVQRQQQEL-EAKADALPQLRLAHPNWLMKRLQQAYPD--QWEAIMAANNRHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTI--IGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ +R+N+ + Y+ LL ++G+E + P A++L P ++ +P F G CS+QD
Sbjct: 170 PMWIRVNENHHSREDYSALLAENGIEANADPLAPQALRLARPADVTTLPGFDLGHCSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE--IADIKLISVDNNLSRLNMISENLK 176
AAAQ+AA LLD + G VLDAC+APGGKT H+LE A +L+++D + RL + +NL
Sbjct: 230 AAAQMAAQLLDAQPGELVLDACAAPGGKTAHILERQPALSQLVAIDMDADRLQRVHQNLA 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
R+ L AT+ D + +++ FDRIL D PC+ +GV+RR+P
Sbjct: 290 RIGLTATVRQGDAAHPG----------------DWWQGPQFDRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLRR DI +L+ +IL+ LW+ LKPGG LL+ TCS+ +E+ EQ F D
Sbjct: 334 DIKWLRRPEDIAQLAALQSQILDALWQQLKPGGMLLYATCSILPDENREQIKAFLARTPD 393
Query: 297 SIRL--------NSPG-QLLPTVNKKQDYDGFFYSLFQKR 327
++ + PG QLLP +++ DGF+Y+ K+
Sbjct: 394 AVHRPLHAGDTPDQPGWQLLPGEDER---DGFYYASIAKQ 430
>gi|91212715|ref|YP_542701.1| 16S rRNA methyltransferase GidB [Escherichia coli UTI89]
gi|117625571|ref|YP_858894.1| 16S rRNA methyltransferase B [Escherichia coli APEC O1]
gi|218560350|ref|YP_002393263.1| 16S rRNA methyltransferase B [Escherichia coli S88]
gi|237703018|ref|ZP_04533499.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|386601307|ref|YP_006102813.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
IHE3034]
gi|386605839|ref|YP_006112139.1| 16S rRNA methyltransferase B [Escherichia coli UM146]
gi|417087033|ref|ZP_11954080.1| 16S rRNA methyltransferase B [Escherichia coli cloneA_i1]
gi|419944197|ref|ZP_14460706.1| 16S rRNA methyltransferase B [Escherichia coli HM605]
gi|422361612|ref|ZP_16442229.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 110-3]
gi|422751129|ref|ZP_16805038.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
H252]
gi|422757058|ref|ZP_16810880.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
H263]
gi|422841297|ref|ZP_16889266.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
H397]
gi|432359736|ref|ZP_19602949.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE4]
gi|432364534|ref|ZP_19607689.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE5]
gi|432467600|ref|ZP_19709678.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE205]
gi|432575521|ref|ZP_19811992.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE55]
gi|432584813|ref|ZP_19821204.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE57]
gi|432589666|ref|ZP_19826018.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE58]
gi|432599535|ref|ZP_19835805.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE62]
gi|432756216|ref|ZP_19990760.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE22]
gi|432780296|ref|ZP_20014516.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE59]
gi|432789289|ref|ZP_20023416.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE65]
gi|432822724|ref|ZP_20056412.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE118]
gi|432824178|ref|ZP_20057848.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE123]
gi|433006869|ref|ZP_20195292.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE227]
gi|433009484|ref|ZP_20197896.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE229]
gi|433074539|ref|ZP_20261180.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE129]
gi|433121851|ref|ZP_20307511.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE157]
gi|433155434|ref|ZP_20340366.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE176]
gi|433165275|ref|ZP_20350005.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE179]
gi|433170274|ref|ZP_20354894.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE180]
gi|433185002|ref|ZP_20369239.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE85]
gi|123265979|sp|Q1R644.1|RSMB_ECOUT RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|224493249|sp|A1AGI0.1|RSMB_ECOK1 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|254766854|sp|B7MCQ4.1|RSMB_ECO45 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|91074289|gb|ABE09170.1| SUN protein [Escherichia coli UTI89]
gi|115514695|gb|ABJ02770.1| Sun protein [Escherichia coli APEC O1]
gi|218367119|emb|CAR04893.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli S88]
gi|226902282|gb|EEH88541.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|294490375|gb|ADE89131.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
IHE3034]
gi|307628323|gb|ADN72627.1| 16S rRNA methyltransferase B [Escherichia coli UM146]
gi|315284577|gb|EFU44022.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 110-3]
gi|323950202|gb|EGB46084.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
H252]
gi|323954589|gb|EGB50372.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
H263]
gi|355349953|gb|EHF99154.1| 16S rRNA methyltransferase B [Escherichia coli cloneA_i1]
gi|371604549|gb|EHN93176.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
H397]
gi|388419537|gb|EIL79266.1| 16S rRNA methyltransferase B [Escherichia coli HM605]
gi|430874045|gb|ELB97610.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE4]
gi|430883385|gb|ELC06379.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE5]
gi|430991220|gb|ELD07624.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE205]
gi|431104802|gb|ELE09166.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE55]
gi|431114713|gb|ELE18240.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE57]
gi|431117795|gb|ELE21019.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE58]
gi|431128351|gb|ELE30535.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE62]
gi|431299757|gb|ELF89323.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE22]
gi|431324688|gb|ELG12104.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE59]
gi|431335169|gb|ELG22309.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE65]
gi|431365457|gb|ELG51962.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE118]
gi|431378703|gb|ELG63694.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE123]
gi|431510316|gb|ELH88561.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE227]
gi|431521410|gb|ELH98655.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE229]
gi|431584296|gb|ELI56280.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE129]
gi|431639569|gb|ELJ07424.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE157]
gi|431671151|gb|ELJ37437.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE176]
gi|431684379|gb|ELJ49987.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE179]
gi|431685044|gb|ELJ50647.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE180]
gi|431703056|gb|ELJ67747.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE85]
Length = 429
Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 197/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQDELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL ++G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVQLETPAPVHALPGFEEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVLAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWSHLKSGGTLVYATCSMLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|15833408|ref|NP_312181.1| 16S rRNA methyltransferase GidB [Escherichia coli O157:H7 str.
Sakai]
gi|13363627|dbj|BAB37577.1| RNA methyltransferase [Escherichia coli O157:H7 str. Sakai]
Length = 429
Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 198/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FNTSDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LRIN+ + ++ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRINRTHHSRDTWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|260599608|ref|YP_003212179.1| 16S rRNA methyltransferase B [Cronobacter turicensis z3032]
gi|260218785|emb|CBA34133.1| Ribosomal RNA small subunit methyltransferase B [Cronobacter
turicensis z3032]
Length = 425
Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 113/333 (33%), Positives = 190/333 (57%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + ++ W +P+W + +++ +P +W+ ++ +++P
Sbjct: 113 LINGVLRQFQRQQDELLAE--FAGQDARWLHPMWLLKRLQTAWPQ--EWQAVVQANNERP 168
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N++ + + LL+++G+ I P A++L P +S +P F G+ ++QD
Sbjct: 169 PMWLRVNRQHHSRDEWLTLLEENGMTGHIHPRYPDAVRLEAPAPVSALPGFEQGWVTVQD 228
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LL ++G +LD C+APGGKT H+LE A +++VD + R++ + ENLKR
Sbjct: 229 ASAQGCVELLAPQNGETILDLCAAPGGKTTHILEAAPQANVLAVDVDAQRISRVYENLKR 288
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
+ ++A + + D RF + + FDRIL D PC+ +GV+RR+
Sbjct: 289 VKMRAEVKVGD------------------GRFPATWCGDMQFDRILLDAPCSATGVIRRH 330
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR +DI +L++ IL+ +W LKPGG LL+ TCS+ EE+ EQ F
Sbjct: 331 PDIKWLRRDSDISELAQLQSDILDAIWPHLKPGGTLLYATCSILPEENSEQIRAFLTRTP 390
Query: 296 DSI-----RLNSPG-QLLPTVNKKQDYDGFFYS 322
D+ +PG Q LP + DGFFY+
Sbjct: 391 DAQLDGTGSAQTPGIQNLPGATEG---DGFFYA 420
>gi|53803078|ref|YP_115239.1| sun protein [Methylococcus capsulatus str. Bath]
gi|53756839|gb|AAU91130.1| sun protein [Methylococcus capsulatus str. Bath]
Length = 431
Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 117/337 (34%), Positives = 182/337 (54%), Gaps = 30/337 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NAILR +LR+K E+ +S+ ES +P W +++ +P QW+ ++ + P
Sbjct: 112 LLNAILRNYLRRKEEL-ESRALQDPESRDAHPAWLRDRLAADWPE--QWETLVQQNNLPP 168
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTII--GPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+TLR+N Y L ++G+ P + L +P+ + +P F G S+QD
Sbjct: 169 PMTLRVNPLMNDRAGYLARLTEAGIAARPCRHSPWGLTLGSPVPVDALPGFAEGRVSVQD 228
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA--DIKLISVDNNLSRLNMISENLK 176
AAQLAAPL+ G VLD C+APGGKT H+LE++ DI+ ++VD++ R I ENL+
Sbjct: 229 EAAQLAAPLVGAEPGERVLDLCAAPGGKTLHMLELSRGDIEAVAVDSDAERCARIRENLE 288
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
R L A ++ D + ++ + FDRIL D PC+ +GV+RR+P
Sbjct: 289 RERLSAAVVTGD----------------ARSPESWWDGRPFDRILLDAPCSATGVIRRHP 332
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI LR+ D+ L++ IL W +LKPGG L++ TCS+ E+E Q F + H D
Sbjct: 333 DIKLLRQAVDLDTLNELQAAILTAAWPLLKPGGILVYATCSVIRAENEAQMSRFLEAHDD 392
Query: 297 SIRLNSPGQL-LPTVNKKQ------DYDGFFYSLFQK 326
+ L P +P + +Q DGF+Y+L +K
Sbjct: 393 AAELPLPAAWGIPLRHGRQILTGESGMDGFYYALLRK 429
>gi|445042681|ref|ZP_21358039.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA35]
gi|444651046|gb|ELW23856.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA35]
Length = 429
Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 198/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FNTSDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LRIN+ + ++ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRINRTHHSRDTWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|419291479|ref|ZP_13833564.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC11A]
gi|378126204|gb|EHW87600.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC11A]
Length = 454
Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 198/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 142 LINGVLRQFQRQQEELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 197
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 198 PMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 257
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 258 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 317
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 318 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 359
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 360 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 419
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 420 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 449
>gi|88801025|ref|ZP_01116574.1| hypothetical protein MED297_05044 [Reinekea blandensis MED297]
gi|88776228|gb|EAR07454.1| hypothetical protein MED297_05044 [Reinekea sp. MED297]
Length = 427
Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 122/338 (36%), Positives = 187/338 (55%), Gaps = 36/338 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA LR F R++ I ES+ P W +++ YP Q+ +I ++
Sbjct: 114 LVNASLRRFQRERETILPQLRRT--ESF---PGWLNKRLRQAYPE--QFADICVQSNQPG 166
Query: 61 PLTLRINQRKTTLISYNKLLKKSGL--ETTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+TLRIN+R T ++ L K GL +T P+ L +P + +P F +G S+QD
Sbjct: 167 PMTLRINRRMMTREAWLLLAIKEGLVAHSTNHSPVGATLASPAPVLALPGFEDGALSVQD 226
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRL 178
AAQ+ A LL + G VLDACSAPGGKT HLLE ADI+L+++D + RL + ENL+R+
Sbjct: 227 EAAQMCATLLPVTDGQRVLDACSAPGGKTGHLLEKADIELVAIDIDEHRLGRVQENLERI 286
Query: 179 NLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDI 238
+ A LI D ++I R++ FD +L D PC+G+GV+RR+PDI
Sbjct: 287 GVSAELIAEDAAEIE----------------RWWDGVPFDAVLLDAPCSGTGVIRRHPDI 330
Query: 239 PWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSI 298
LR+ DIK LS+ ++L+ LW +KPGG LL+ TCS+ +E+ ++ F + H ++
Sbjct: 331 KLLRKSADIKALSQVQSRLLDRLWGTVKPGGYLLYATCSVLPDENTDRIAAFLQAHPEA- 389
Query: 299 RLNSPGQLLPTVNKKQ---------DYDGFFYSLFQKR 327
P L V+ + +DGF+Y+L +K+
Sbjct: 390 -QEQPLALQADVDTEHGVQWLPQSDGHDGFYYALLKKQ 426
>gi|157373174|ref|YP_001471774.1| sun protein [Shewanella sediminis HAW-EB3]
gi|157315548|gb|ABV34646.1| sun protein [Shewanella sediminis HAW-EB3]
Length = 426
Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 125/341 (36%), Positives = 187/341 (54%), Gaps = 44/341 (12%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++N +LR R++ K + N P W I ++K YP WK I++ H++P
Sbjct: 114 VVNGVLRNIQRQE----KPLPTDNETLALNTPAWIIKRLKAAYPE--SWKEIVEQSHQRP 167
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTII-GPLAIKLHTPISISKIPKFFNGFCSIQDA 119
P+ LR N+ T Y L + ++ + AI L +P + ++P F G S+QD
Sbjct: 168 PMWLRSNKLSQTRDEYLASLAEVEIQASAGKSSDAILLESPKDVLQLPGFEEGTASVQDG 227
Query: 120 AAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKRL 178
AAQ AA LL G VLDAC+APGGKTCHLLE A +I+L++VD + +RL + +NL RL
Sbjct: 228 AAQWAATLLAPIDGELVLDACAAPGGKTCHLLEQAPNIELVAVDFDANRLERVQQNLDRL 287
Query: 179 NLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDI 238
+L A LI D + I+ +++ FDRIL D PC+ +GV+RR+PDI
Sbjct: 288 SLNAKLIHGDAADID----------------SWWQGDKFDRILLDAPCSATGVIRRHPDI 331
Query: 239 PWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIF-------- 290
WLR++ DI++L+ KIL++ W+ LKPGG LL+ TCS+ +E+E+Q F
Sbjct: 332 KWLRKQADIEELASLQSKILDHCWQWLKPGGTLLYATCSILPQENEQQIRAFLERANDAT 391
Query: 291 -----SKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 326
+NH D I Q+ P + ++ DGF+Y+ K
Sbjct: 392 LVPIDEQNHPDDIGW----QITPGL---ENMDGFYYARLVK 425
>gi|15803816|ref|NP_289850.1| 16S rRNA methyltransferase GidB [Escherichia coli O157:H7 str.
EDL933]
gi|168752263|ref|ZP_02777285.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC4113]
gi|168758516|ref|ZP_02783523.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC4401]
gi|168764971|ref|ZP_02789978.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC4501]
gi|168769150|ref|ZP_02794157.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC4486]
gi|168777854|ref|ZP_02802861.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC4196]
gi|168783855|ref|ZP_02808862.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC4076]
gi|168786178|ref|ZP_02811185.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC869]
gi|168802718|ref|ZP_02827725.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC508]
gi|195939836|ref|ZP_03085218.1| 16S rRNA methyltransferase B [Escherichia coli O157:H7 str. EC4024]
gi|208808123|ref|ZP_03250460.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC4206]
gi|208812777|ref|ZP_03254106.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC4045]
gi|208820338|ref|ZP_03260658.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC4042]
gi|209396232|ref|YP_002272745.1| 16S rRNA methyltransferase B [Escherichia coli O157:H7 str. EC4115]
gi|217326360|ref|ZP_03442444.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. TW14588]
gi|254795225|ref|YP_003080062.1| 16S rRNA methyltransferase B [Escherichia coli O157:H7 str.
TW14359]
gi|261224593|ref|ZP_05938874.1| 16S rRNA m5C967 methyltransferase [Escherichia coli O157:H7 str.
FRIK2000]
gi|261254513|ref|ZP_05947046.1| 16S rRNA m5C967 methyltransferase [Escherichia coli O157:H7 str.
FRIK966]
gi|387884458|ref|YP_006314760.1| 16S rRNA methyltransferase B [Escherichia coli Xuzhou21]
gi|416311802|ref|ZP_11657199.1| Ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. 1044]
gi|416320321|ref|ZP_11662873.1| Ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC1212]
gi|416326433|ref|ZP_11666642.1| Ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. 1125]
gi|416777936|ref|ZP_11875508.1| 16S rRNA methyltransferase B [Escherichia coli O157:H7 str. G5101]
gi|419047499|ref|ZP_13594431.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC3A]
gi|419053055|ref|ZP_13599922.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC3B]
gi|419060197|ref|ZP_13606988.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC3C]
gi|419064554|ref|ZP_13611274.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC3D]
gi|419072617|ref|ZP_13618207.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC3E]
gi|419084013|ref|ZP_13629440.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC4A]
gi|419088360|ref|ZP_13633711.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC4B]
gi|419095252|ref|ZP_13640522.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC4C]
gi|419100135|ref|ZP_13645325.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC4D]
gi|419105903|ref|ZP_13651027.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC4E]
gi|419112055|ref|ZP_13657101.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC4F]
gi|420271731|ref|ZP_14774082.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA22]
gi|420277324|ref|ZP_14779604.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA40]
gi|420288824|ref|ZP_14791006.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TW10246]
gi|420294432|ref|ZP_14796544.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TW11039]
gi|420300287|ref|ZP_14802330.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TW09109]
gi|420306538|ref|ZP_14808526.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TW10119]
gi|420311718|ref|ZP_14813646.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1738]
gi|420317149|ref|ZP_14819021.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1734]
gi|421815693|ref|ZP_16251350.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
8.0416]
gi|421820819|ref|ZP_16256298.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
10.0821]
gi|421826125|ref|ZP_16261478.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
FRIK920]
gi|421832875|ref|ZP_16268155.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA7]
gi|423727243|ref|ZP_17701154.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA31]
gi|424085901|ref|ZP_17822387.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
FDA517]
gi|424092300|ref|ZP_17828229.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
FRIK1996]
gi|424098973|ref|ZP_17834248.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
FRIK1985]
gi|424105185|ref|ZP_17839927.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
FRIK1990]
gi|424117773|ref|ZP_17851605.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA3]
gi|424130109|ref|ZP_17863011.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA9]
gi|424149386|ref|ZP_17880756.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA15]
gi|424155234|ref|ZP_17886165.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA24]
gi|424254406|ref|ZP_17891712.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA25]
gi|424332908|ref|ZP_17897618.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA28]
gi|424451672|ref|ZP_17903340.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA32]
gi|424464322|ref|ZP_17914693.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA39]
gi|424477128|ref|ZP_17926440.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA42]
gi|424482888|ref|ZP_17931863.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TW07945]
gi|424489068|ref|ZP_17937613.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TW09098]
gi|424495733|ref|ZP_17943344.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TW09195]
gi|424502422|ref|ZP_17949307.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC4203]
gi|424508674|ref|ZP_17955055.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC4196]
gi|424516028|ref|ZP_17960660.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TW14313]
gi|424522226|ref|ZP_17966337.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TW14301]
gi|424528102|ref|ZP_17971813.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC4421]
gi|424534250|ref|ZP_17977593.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC4422]
gi|424540303|ref|ZP_17983242.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC4013]
gi|424546434|ref|ZP_17988800.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC4402]
gi|424552656|ref|ZP_17994495.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC4439]
gi|424558841|ref|ZP_18000246.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC4436]
gi|424565181|ref|ZP_18006179.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC4437]
gi|424577466|ref|ZP_18017514.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1845]
gi|424583285|ref|ZP_18022927.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1863]
gi|425099959|ref|ZP_18502687.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
3.4870]
gi|425106056|ref|ZP_18508368.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
5.2239]
gi|425112067|ref|ZP_18513983.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
6.0172]
gi|425127991|ref|ZP_18529154.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
8.0586]
gi|425133735|ref|ZP_18534580.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
8.2524]
gi|425140311|ref|ZP_18540687.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
10.0833]
gi|425146019|ref|ZP_18546007.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
10.0869]
gi|425152138|ref|ZP_18551748.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
88.0221]
gi|425158012|ref|ZP_18557271.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA34]
gi|425164361|ref|ZP_18563243.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
FDA506]
gi|425170105|ref|ZP_18568573.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
FDA507]
gi|425176164|ref|ZP_18574279.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
FDA504]
gi|425182208|ref|ZP_18579898.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
FRIK1999]
gi|425188474|ref|ZP_18585742.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
FRIK1997]
gi|425195241|ref|ZP_18592006.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
NE1487]
gi|425201716|ref|ZP_18597918.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
NE037]
gi|425208101|ref|ZP_18603893.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
FRIK2001]
gi|425213856|ref|ZP_18609251.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA4]
gi|425219978|ref|ZP_18614936.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA23]
gi|425226526|ref|ZP_18620988.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA49]
gi|425232783|ref|ZP_18626818.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA45]
gi|425238706|ref|ZP_18632421.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TT12B]
gi|425256919|ref|ZP_18649426.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
CB7326]
gi|425263171|ref|ZP_18655167.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC96038]
gi|425296624|ref|ZP_18686787.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA38]
gi|425331759|ref|ZP_18719590.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1846]
gi|425337936|ref|ZP_18725287.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1847]
gi|425344249|ref|ZP_18731134.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1848]
gi|425356356|ref|ZP_18742418.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1850]
gi|425362317|ref|ZP_18747959.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1856]
gi|425368534|ref|ZP_18753652.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1862]
gi|425387738|ref|ZP_18771292.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1866]
gi|425394390|ref|ZP_18777494.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1868]
gi|425400530|ref|ZP_18783230.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1869]
gi|425406619|ref|ZP_18788836.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1870]
gi|425413005|ref|ZP_18794763.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
NE098]
gi|425419318|ref|ZP_18800582.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
FRIK523]
gi|425430592|ref|ZP_18811196.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
0.1304]
gi|428955098|ref|ZP_19026888.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
88.1042]
gi|428961086|ref|ZP_19032375.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
89.0511]
gi|428967705|ref|ZP_19038412.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
90.0091]
gi|428973449|ref|ZP_19043770.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
90.0039]
gi|428979901|ref|ZP_19049716.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
90.2281]
gi|428985666|ref|ZP_19055053.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
93.0055]
gi|428991817|ref|ZP_19060800.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
93.0056]
gi|428997704|ref|ZP_19066293.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
94.0618]
gi|429003980|ref|ZP_19072073.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
95.0183]
gi|429010079|ref|ZP_19077529.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
95.1288]
gi|429022433|ref|ZP_19088948.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
96.0428]
gi|429028495|ref|ZP_19094483.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
96.0427]
gi|429034668|ref|ZP_19100185.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
96.0939]
gi|429040754|ref|ZP_19105849.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
96.0932]
gi|429046614|ref|ZP_19111321.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
96.0107]
gi|429052799|ref|ZP_19117352.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
97.0003]
gi|429057485|ref|ZP_19121764.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
97.1742]
gi|429062975|ref|ZP_19126959.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
97.0007]
gi|429069210|ref|ZP_19132661.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
99.0672]
gi|429075881|ref|ZP_19139119.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
99.0678]
gi|429828394|ref|ZP_19359411.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
96.0109]
gi|429834830|ref|ZP_19365128.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
97.0010]
gi|444926908|ref|ZP_21246181.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
09BKT078844]
gi|444933349|ref|ZP_21252342.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
99.0814]
gi|444939295|ref|ZP_21257991.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
99.0815]
gi|444944309|ref|ZP_21262782.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
99.0816]
gi|444949091|ref|ZP_21267390.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
99.0839]
gi|444954740|ref|ZP_21272815.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
99.0848]
gi|444960928|ref|ZP_21278735.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
99.1753]
gi|444961605|ref|ZP_21279377.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
99.1775]
gi|444982701|ref|ZP_21299596.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
ATCC 700728]
gi|444987512|ref|ZP_21304284.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA11]
gi|444992728|ref|ZP_21309366.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA19]
gi|445004352|ref|ZP_21320727.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA2]
gi|445009501|ref|ZP_21325722.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA47]
gi|445015553|ref|ZP_21331630.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA48]
gi|445015779|ref|ZP_21331842.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA8]
gi|445025997|ref|ZP_21341809.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
7.1982]
gi|445030851|ref|ZP_21346515.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
99.1781]
gi|445036876|ref|ZP_21352392.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
99.1762]
gi|445047161|ref|ZP_21362405.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
3.4880]
gi|445052687|ref|ZP_21367707.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
95.0083]
gi|445054034|ref|ZP_21369003.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
99.0670]
gi|452971240|ref|ZP_21969467.1| 16S rRNA methyltransferase B [Escherichia coli O157:H7 str. EC4009]
gi|46396973|sp|Q8XEE5.1|RSMB_ECO57 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|224493246|sp|B5YT08.1|RSMB_ECO5E RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|12517918|gb|AAG58410.1|AE005556_3 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
gi|187767005|gb|EDU30849.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC4196]
gi|188013841|gb|EDU51963.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC4113]
gi|188998877|gb|EDU67863.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC4076]
gi|189354681|gb|EDU73100.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC4401]
gi|189361764|gb|EDU80183.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC4486]
gi|189365121|gb|EDU83537.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC4501]
gi|189373894|gb|EDU92310.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC869]
gi|189375353|gb|EDU93769.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC508]
gi|208727924|gb|EDZ77525.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC4206]
gi|208734054|gb|EDZ82741.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC4045]
gi|208740461|gb|EDZ88143.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC4042]
gi|209157632|gb|ACI35065.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC4115]
gi|209757340|gb|ACI76982.1| RNA methyltransferase [Escherichia coli]
gi|209757342|gb|ACI76983.1| RNA methyltransferase [Escherichia coli]
gi|209757346|gb|ACI76985.1| RNA methyltransferase [Escherichia coli]
gi|217322581|gb|EEC31005.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. TW14588]
gi|254594625|gb|ACT73986.1| 16S rRNA m5C967 methyltransferase [Escherichia coli O157:H7 str.
TW14359]
gi|320191677|gb|EFW66327.1| Ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC1212]
gi|320639593|gb|EFX09187.1| 16S rRNA methyltransferase B [Escherichia coli O157:H7 str. G5101]
gi|326342537|gb|EGD66311.1| Ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. 1044]
gi|326344524|gb|EGD68273.1| Ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. 1125]
gi|377890207|gb|EHU54665.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC3A]
gi|377891902|gb|EHU56354.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC3B]
gi|377900281|gb|EHU64615.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC3C]
gi|377905441|gb|EHU69710.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC3E]
gi|377907052|gb|EHU71288.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC3D]
gi|377920567|gb|EHU84584.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC4A]
gi|377927422|gb|EHU91337.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC4B]
gi|377937061|gb|EHV00849.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC4C]
gi|377938794|gb|EHV02557.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC4D]
gi|377945406|gb|EHV09101.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC4E]
gi|377953416|gb|EHV16994.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC4F]
gi|386797916|gb|AFJ30950.1| 16S rRNA methyltransferase B [Escherichia coli Xuzhou21]
gi|390638802|gb|EIN18296.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
FRIK1996]
gi|390640468|gb|EIN19926.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
FDA517]
gi|390658118|gb|EIN35920.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
FRIK1985]
gi|390661209|gb|EIN38871.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
FRIK1990]
gi|390675243|gb|EIN51400.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA3]
gi|390682205|gb|EIN57981.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA9]
gi|390698815|gb|EIN73188.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA15]
gi|390712189|gb|EIN85146.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA22]
gi|390719329|gb|EIN92055.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA25]
gi|390721279|gb|EIN93979.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA24]
gi|390725338|gb|EIN97847.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA28]
gi|390738884|gb|EIO10081.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA31]
gi|390739590|gb|EIO10758.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA32]
gi|390756199|gb|EIO25710.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA40]
gi|390763592|gb|EIO32833.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA39]
gi|390766391|gb|EIO35515.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA42]
gi|390787349|gb|EIO54839.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TW07945]
gi|390787776|gb|EIO55249.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TW10246]
gi|390794064|gb|EIO61365.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TW11039]
gi|390802347|gb|EIO69387.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TW09098]
gi|390804658|gb|EIO71606.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TW09109]
gi|390814253|gb|EIO80833.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TW10119]
gi|390823772|gb|EIO89803.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC4203]
gi|390825633|gb|EIO91550.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TW09195]
gi|390828666|gb|EIO94317.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC4196]
gi|390843114|gb|EIP06932.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TW14313]
gi|390843983|gb|EIP07750.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TW14301]
gi|390848649|gb|EIP12109.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC4421]
gi|390859097|gb|EIP21457.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC4422]
gi|390863495|gb|EIP25629.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC4013]
gi|390868113|gb|EIP29876.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC4402]
gi|390876246|gb|EIP37234.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC4439]
gi|390881607|gb|EIP42182.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC4436]
gi|390891470|gb|EIP51100.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC4437]
gi|390898271|gb|EIP57544.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1738]
gi|390906360|gb|EIP65251.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1734]
gi|390916801|gb|EIP75242.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1863]
gi|390917544|gb|EIP75962.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1845]
gi|408062131|gb|EKG96637.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA7]
gi|408064509|gb|EKG98990.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
FRIK920]
gi|408067592|gb|EKH02025.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA34]
gi|408077493|gb|EKH11697.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
FDA506]
gi|408080968|gb|EKH15007.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
FDA507]
gi|408089452|gb|EKH22762.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
FDA504]
gi|408095535|gb|EKH28504.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
FRIK1999]
gi|408101936|gb|EKH34354.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
FRIK1997]
gi|408106542|gb|EKH38640.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
NE1487]
gi|408113356|gb|EKH44956.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
NE037]
gi|408119505|gb|EKH50571.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
FRIK2001]
gi|408125672|gb|EKH56268.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA4]
gi|408135545|gb|EKH65321.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA23]
gi|408138303|gb|EKH67978.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA49]
gi|408144733|gb|EKH73953.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA45]
gi|408153036|gb|EKH81446.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TT12B]
gi|408171399|gb|EKH98518.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
CB7326]
gi|408178102|gb|EKI04835.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC96038]
gi|408214732|gb|EKI39143.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA38]
gi|408244486|gb|EKI66915.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1846]
gi|408253261|gb|EKI74865.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1847]
gi|408257112|gb|EKI78456.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1848]
gi|408272259|gb|EKI92358.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1850]
gi|408275195|gb|EKI95169.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1856]
gi|408283572|gb|EKJ02729.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1862]
gi|408305279|gb|EKJ22678.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1868]
gi|408305968|gb|EKJ23348.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1866]
gi|408316875|gb|EKJ33128.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1869]
gi|408322436|gb|EKJ38422.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1870]
gi|408324743|gb|EKJ40668.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
NE098]
gi|408334853|gb|EKJ49723.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
FRIK523]
gi|408344274|gb|EKJ58649.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
0.1304]
gi|408546795|gb|EKK24202.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
5.2239]
gi|408546913|gb|EKK24314.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
3.4870]
gi|408547904|gb|EKK25290.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
6.0172]
gi|408565193|gb|EKK41281.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
8.0586]
gi|408576817|gb|EKK52402.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
10.0833]
gi|408579450|gb|EKK54910.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
8.2524]
gi|408589320|gb|EKK63841.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
10.0869]
gi|408594904|gb|EKK69177.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
88.0221]
gi|408597147|gb|EKK71220.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
8.0416]
gi|408608298|gb|EKK81697.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
10.0821]
gi|427202339|gb|EKV72671.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
88.1042]
gi|427203576|gb|EKV73879.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
89.0511]
gi|427218770|gb|EKV87757.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
90.0091]
gi|427222342|gb|EKV91132.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
90.2281]
gi|427225553|gb|EKV94184.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
90.0039]
gi|427239380|gb|EKW06864.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
93.0056]
gi|427239772|gb|EKW07246.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
93.0055]
gi|427243824|gb|EKW11179.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
94.0618]
gi|427258161|gb|EKW24263.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
95.0183]
gi|427261502|gb|EKW27433.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
95.1288]
gi|427274459|gb|EKW39111.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
96.0428]
gi|427277110|gb|EKW41659.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
96.0427]
gi|427281438|gb|EKW45755.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
96.0939]
gi|427289864|gb|EKW53370.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
96.0932]
gi|427296633|gb|EKW59682.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
96.0107]
gi|427297080|gb|EKW60121.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
97.0003]
gi|427309476|gb|EKW71793.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
97.1742]
gi|427312720|gb|EKW74870.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
97.0007]
gi|427317155|gb|EKW79065.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
99.0672]
gi|427324536|gb|EKW86008.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
99.0678]
gi|429251853|gb|EKY36421.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
96.0109]
gi|429253128|gb|EKY37622.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
97.0010]
gi|444534739|gb|ELV14935.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
99.0814]
gi|444537598|gb|ELV17516.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
09BKT078844]
gi|444544262|gb|ELV23338.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
99.0815]
gi|444554301|gb|ELV31876.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
99.0816]
gi|444555504|gb|ELV32967.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
99.0839]
gi|444560773|gb|ELV37916.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
99.0848]
gi|444568578|gb|ELV45247.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
99.1753]
gi|444586466|gb|ELV61969.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
99.1775]
gi|444589114|gb|ELV64464.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
ATCC 700728]
gi|444590603|gb|ELV65913.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA11]
gi|444605007|gb|ELV79663.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA19]
gi|444611921|gb|ELV86238.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA2]
gi|444618217|gb|ELV92308.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA48]
gi|444619209|gb|ELV93260.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA47]
gi|444635155|gb|ELW08593.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
7.1982]
gi|444638662|gb|ELW11993.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
99.1781]
gi|444639518|gb|ELW12827.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA8]
gi|444642084|gb|ELW15294.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
99.1762]
gi|444657797|gb|ELW30263.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
3.4880]
gi|444660867|gb|ELW33212.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
95.0083]
gi|444675324|gb|ELW46778.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
99.0670]
Length = 429
Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 198/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FNTSDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LRIN+ + ++ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRINRTHHSRDTWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|432389042|ref|ZP_19631922.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE16]
gi|430904512|gb|ELC26221.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE16]
Length = 429
Score = 210 bits (534), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 115/333 (34%), Positives = 197/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQDELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LRIN+ + S+ LL ++G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVQLETPAPVHALPGFEEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVLAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWSHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|417240733|ref|ZP_12036923.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
9.0111]
gi|386212768|gb|EII23212.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
9.0111]
Length = 454
Score = 210 bits (534), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 198/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 142 LINGVLRQFQRQQEELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 197
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 198 PMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 257
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 258 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 317
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 318 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 359
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 360 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 419
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 420 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 449
>gi|397668266|ref|YP_006509803.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Legionella
pneumophila subsp. pneumophila]
gi|395131677|emb|CCD09970.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Legionella
pneumophila subsp. pneumophila]
Length = 426
Score = 210 bits (534), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 121/339 (35%), Positives = 185/339 (54%), Gaps = 35/339 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR F R++ I + K+ + P W + +++ +PN W+ I + + P
Sbjct: 107 LVNAVLRNFCRRQDHILE-KLAAEPVFIYGQPNWLLQRLQKDWPN--DWQFIAEANDRHP 163
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLET--TIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+TLR+N K ++ Y LLKKSG+E + P I L P + +P F G S+QD
Sbjct: 164 PMTLRVNVLKHSVDEYLDLLKKSGIEAFKHPVAPDGITLAIPCDVMTLPGFAQGSVSVQD 223
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AA QLAA LL ++ G VLDAC APGGKTCH+LE + + +++D + RL + +NL R
Sbjct: 224 AAPQLAAYLLSLKPGQRVLDACCAPGGKTCHILEKESGLACVALDLDPQRLQRVRDNLNR 283
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L+L+AT++ D+ + ++ FDRIL D PC+ +GV+RR+ D
Sbjct: 284 LDLQATVVQGDVLESR----------------SWWDGHPFDRILLDAPCSATGVIRRHSD 327
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I LR +I +S+ +LN+LW +L PGG +++ TCS+ +E+E Q F H D
Sbjct: 328 IKLLRTDEEISAISQVQSSMLNSLWPLLAPGGLMVYATCSIMSDENELQIARFVAEHPDC 387
Query: 298 I---------RLNSPG-QLLPTVNKKQDYDGFFYSLFQK 326
R G Q+LP + DGFFYS+ +K
Sbjct: 388 QVSDGKWSWGRWTGHGQQILPG---EHGMDGFFYSVLRK 423
>gi|56459128|ref|YP_154409.1| tRNA and rRNA cytosine-C5-methylase [Idiomarina loihiensis L2TR]
gi|56178138|gb|AAV80860.1| tRNA and rRNA cytosine-C5-methylase [Idiomarina loihiensis L2TR]
Length = 442
Score = 210 bits (534), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 190/333 (57%), Gaps = 25/333 (7%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIH-ESYWNYPIWWINQVKITYPNFFQWKNILDVGHKK 59
++N ILR+ LR+ +S+ + ++ N+P W ++ +P Q +IL +
Sbjct: 126 LVNGILRQLLREAPATDESQQRELPVDAMQNHPRWLFEAIQADHPQ--QASDILIENNAH 183
Query: 60 PPLTLRINQRKTTLISYNKLLKKSGL--ETTIIGPLAIKLHTPISISKIPKFFNGFCSIQ 117
PP+ LR+N+R Y + L+ SG+ E + AI+LH+P+ + ++P F G S+Q
Sbjct: 184 PPMWLRVNRRFFNRDDYLRQLEDSGIAAEGDTLAGDAIRLHSPVPVERLPGFDRGHASVQ 243
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIK--LISVDNNLSRLNMISENL 175
D +AQLAA L++++ VLD C+APGGK HLLE D + + ++D + RL + ENL
Sbjct: 244 DRSAQLAADYLNVKASHRVLDCCAAPGGKLLHLLERNDFEQPVQAIDIDAKRLERVDENL 303
Query: 176 KRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRN 235
+R L A + +D+++ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 304 ERAGLSAVVHCADVAETE----------------DWWDGEQFDRILLDAPCSATGVIRRH 347
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +ILN+LW +LK GG+LL+ TCS+ +E++ Q F K
Sbjct: 348 PDIKWLRRAEDINELAQLQSQILNSLWPLLKNGGELLYATCSILSKENQTQIESFLKQQS 407
Query: 296 DS--IRLNSPGQLLPTVNKKQDYDGFFYSLFQK 326
+ I ++ + L + +++ DGFFY+ +K
Sbjct: 408 SASLIPIDEKQKTLQLLPGERNGDGFFYARLKK 440
>gi|424079445|ref|ZP_17816412.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
FDA505]
gi|424111833|ref|ZP_17846062.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
93-001]
gi|424123959|ref|ZP_17857265.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA5]
gi|424136431|ref|ZP_17868878.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA10]
gi|424142984|ref|ZP_17874850.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA14]
gi|424457860|ref|ZP_17908969.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA33]
gi|424470622|ref|ZP_17920433.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA41]
gi|424571311|ref|ZP_18011854.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC4448]
gi|425313315|ref|ZP_18702489.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1735]
gi|425319292|ref|ZP_18708075.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1736]
gi|425325391|ref|ZP_18713742.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1737]
gi|425350051|ref|ZP_18736513.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1849]
gi|425374850|ref|ZP_18759487.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1864]
gi|428949024|ref|ZP_19021295.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
88.1467]
gi|429016594|ref|ZP_19083471.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
95.0943]
gi|429080917|ref|ZP_19144041.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
99.0713]
gi|444972211|ref|ZP_21289536.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
99.1793]
gi|444994078|ref|ZP_21310694.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA13]
gi|390640658|gb|EIN20109.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
FDA505]
gi|390658182|gb|EIN35982.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
93-001]
gi|390678573|gb|EIN54524.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA5]
gi|390693637|gb|EIN68256.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA10]
gi|390698117|gb|EIN72506.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA14]
gi|390742865|gb|EIO13854.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA33]
gi|390764769|gb|EIO33966.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA41]
gi|390893496|gb|EIP53047.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC4448]
gi|408225014|gb|EKI48710.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1735]
gi|408236153|gb|EKI59065.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1736]
gi|408239910|gb|EKI62635.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1737]
gi|408263722|gb|EKI84556.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1849]
gi|408289404|gb|EKJ08165.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1864]
gi|427206250|gb|EKV76467.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
88.1467]
gi|427259193|gb|EKW25257.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
95.0943]
gi|427326266|gb|EKW87689.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
99.0713]
gi|444575310|gb|ELV51554.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
99.1793]
gi|444616800|gb|ELV90949.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA13]
Length = 420
Score = 210 bits (534), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 198/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 108 LINGVLRQFQRQQEELLAE--FNTSDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 163
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LRIN+ + ++ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 164 PMWLRINRTHHSRDTWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 223
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 224 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 283
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 284 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 325
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 326 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 385
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 386 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 415
>gi|191174468|ref|ZP_03035969.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
F11]
gi|222157992|ref|YP_002558131.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
LF82]
gi|300973968|ref|ZP_07172375.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 200-1]
gi|306816369|ref|ZP_07450507.1| 16S rRNA methyltransferase B [Escherichia coli NC101]
gi|387618578|ref|YP_006121600.1| 16S rRNA methyltransferase B [Escherichia coli O83:H1 str. NRG
857C]
gi|419702115|ref|ZP_14229711.1| 16S rRNA methyltransferase B [Escherichia coli SCI-07]
gi|422373691|ref|ZP_16453990.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 60-1]
gi|432383188|ref|ZP_19626113.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE15]
gi|432472635|ref|ZP_19714672.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE206]
gi|432515679|ref|ZP_19752894.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE224]
gi|432613294|ref|ZP_19849451.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE72]
gi|432647961|ref|ZP_19883746.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE86]
gi|432657524|ref|ZP_19893220.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE93]
gi|432700805|ref|ZP_19935949.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE169]
gi|432715135|ref|ZP_19950162.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE8]
gi|432747267|ref|ZP_19981928.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE43]
gi|432803470|ref|ZP_20037422.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE84]
gi|432906993|ref|ZP_20115469.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE194]
gi|432940098|ref|ZP_20138012.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE183]
gi|432973564|ref|ZP_20162407.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE207]
gi|432987136|ref|ZP_20175848.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE215]
gi|433040287|ref|ZP_20227878.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE113]
gi|433079474|ref|ZP_20265993.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE131]
gi|433084214|ref|ZP_20270661.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE133]
gi|433102874|ref|ZP_20288946.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE145]
gi|433145892|ref|ZP_20331025.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE168]
gi|433190093|ref|ZP_20374181.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE88]
gi|433200032|ref|ZP_20383919.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE94]
gi|190905276|gb|EDV64914.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
F11]
gi|222034997|emb|CAP77740.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
LF82]
gi|300308978|gb|EFJ63498.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 200-1]
gi|305850765|gb|EFM51222.1| 16S rRNA methyltransferase B [Escherichia coli NC101]
gi|312947839|gb|ADR28666.1| 16S rRNA methyltransferase B [Escherichia coli O83:H1 str. NRG
857C]
gi|324014965|gb|EGB84184.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 60-1]
gi|380346686|gb|EIA34978.1| 16S rRNA methyltransferase B [Escherichia coli SCI-07]
gi|430903573|gb|ELC25309.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE15]
gi|430995626|gb|ELD11916.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE206]
gi|431038374|gb|ELD49270.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE224]
gi|431146316|gb|ELE47752.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE72]
gi|431177934|gb|ELE77847.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE86]
gi|431187635|gb|ELE87134.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE93]
gi|431239916|gb|ELF34378.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE169]
gi|431253066|gb|ELF46578.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE8]
gi|431289167|gb|ELF79908.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE43]
gi|431346009|gb|ELG32922.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE84]
gi|431427959|gb|ELH09901.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE194]
gi|431459992|gb|ELH40281.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE183]
gi|431478911|gb|ELH58654.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE207]
gi|431494381|gb|ELH73969.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE215]
gi|431549194|gb|ELI23281.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE113]
gi|431594311|gb|ELI64593.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE131]
gi|431598485|gb|ELI68277.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE133]
gi|431616671|gb|ELI85696.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE145]
gi|431658768|gb|ELJ25678.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE168]
gi|431702994|gb|ELJ67686.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE88]
gi|431718323|gb|ELJ82402.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE94]
Length = 429
Score = 210 bits (534), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 197/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQDELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL ++G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVQLETPAPVHALPGFEEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVLAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWSHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|375129419|ref|YP_004991515.1| cytosine-C5-methylase [Vibrio furnissii NCTC 11218]
gi|315178589|gb|ADT85503.1| cytosine-C5-methylase [Vibrio furnissii NCTC 11218]
Length = 426
Score = 210 bits (534), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 116/337 (34%), Positives = 189/337 (56%), Gaps = 34/337 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R + + M + Y +P W + ++ YP QW+ I++ + K
Sbjct: 113 LINAVLRNYQRNQDALDAEAMSHNAGKY-GHPSWLLKLLQNAYPQ--QWEAIVEANNSKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + +Y LL +++++ A+KL P ++++P F G+ S+QD
Sbjct: 170 PMWLRVNHQHHERDAYQALLNHENIDSSVHSQARDALKLAAPCDVTQLPGFAQGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQLA L + G +LD C+APGGKT H+LE ++++D + +RL + +NLKR
Sbjct: 230 AAAQLALHYLQPQDGELILDCCAAPGGKTAHILERTHGCDVVAIDCDDTRLKRVHDNLKR 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
LNL A ++ D R+ ++++ FDRIL D PC+ +GV+RR+
Sbjct: 290 LNLSAKVVCGDA------------------RYPEQWWQGGQFDRILLDAPCSATGVIRRH 331
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIF----S 291
PDI WLRR DI L++ +IL+ +W+ LKPGG L++ TCS+ +E+ Q F S
Sbjct: 332 PDIKWLRRGEDIAALAELQREILDAMWQQLKPGGTLVYATCSITPQENVLQVKDFLARTS 391
Query: 292 KNHKDSIRLNSPG-QLLPTVNKKQDYDGFFYSLFQKR 327
L++PG Q+LP ++D DGF+Y++ K+
Sbjct: 392 NAQLVGSELDNPGRQILPG---EEDMDGFYYAVLTKQ 425
>gi|345301136|ref|YP_004830494.1| ribosomal RNA small subunit methyltransferase B [Enterobacter
asburiae LF7a]
gi|345095073|gb|AEN66709.1| Ribosomal RNA small subunit methyltransferase B [Enterobacter
asburiae LF7a]
Length = 420
Score = 210 bits (534), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 118/330 (35%), Positives = 189/330 (57%), Gaps = 30/330 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + E+ + +P W +N++K YP QW++I +++P
Sbjct: 108 LINGVLRQFQRQQEELLAE--FARTENQYLHPSWLLNRLKKAYPQ--QWQDIAGANNQRP 163
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLE--TTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LRIN+ T ++ LLK+SG+ T P A++L TP + +P F G+ ++QD
Sbjct: 164 PMWLRINRNHHTRDAWLALLKESGMNGFTHDAYPDAVRLETPAPVHALPGFEEGWVTVQD 223
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L+ ++G +LD C+APGGKT H+LE+A +++VD + RL+ + +NLKR
Sbjct: 224 ASAQGCMTWLEPQNGEQILDLCAAPGGKTTHILEVAPQASVLAVDVDEQRLSRVYDNLKR 283
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L LKA + D K + + FDRIL D PC+ +GV+RR+PD
Sbjct: 284 LGLKAQVKQGDGRKP----------------AEWCGDTQFDRILLDAPCSATGVIRRHPD 327
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ +Q F K ++
Sbjct: 328 IKWLRRDRDINELAQLQAEILDAVWPHLKSGGTLVYATCSVLPEENCQQIAAFLKRTPNA 387
Query: 298 IRLNS-----PGQLLPTVNKKQDYDGFFYS 322
+ PG L + ++ DGFFY+
Sbjct: 388 SLHGTGTPERPG--LQNLPGAEEGDGFFYA 415
>gi|218691575|ref|YP_002399787.1| 16S rRNA methyltransferase B [Escherichia coli ED1a]
gi|254766857|sp|B7N0S9.1|RSMB_ECO81 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|218429139|emb|CAR09947.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli
ED1a]
Length = 429
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 197/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQDELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL ++G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVQLETPAPVHALPGFEEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVLAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWSHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|30064610|ref|NP_838781.1| 16S rRNA methyltransferase B [Shigella flexneri 2a str. 2457T]
gi|56480310|ref|NP_709076.2| 16S rRNA methyltransferase GidB [Shigella flexneri 2a str. 301]
gi|415857092|ref|ZP_11531921.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
2a str. 2457T]
gi|417704344|ref|ZP_12353442.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
K-218]
gi|417725774|ref|ZP_12374553.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
K-304]
gi|417731220|ref|ZP_12379899.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
K-671]
gi|417741099|ref|ZP_12389663.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
4343-70]
gi|417743803|ref|ZP_12392332.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
2930-71]
gi|418252661|ref|ZP_12878214.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
6603-63]
gi|420344663|ref|ZP_14846119.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
K-404]
gi|46396790|sp|Q7UBD3.1|RSMB_SHIFL RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|30042869|gb|AAP18592.1| hypothetical protein S3545 [Shigella flexneri 2a str. 2457T]
gi|56383861|gb|AAN44783.2| conserved hypothetical protein [Shigella flexneri 2a str. 301]
gi|313648789|gb|EFS13229.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
2a str. 2457T]
gi|332749603|gb|EGJ80020.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
K-671]
gi|332749746|gb|EGJ80161.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
4343-70]
gi|332766528|gb|EGJ96735.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
2930-71]
gi|332998314|gb|EGK17914.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
K-218]
gi|333012367|gb|EGK31748.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
K-304]
gi|391261348|gb|EIQ20397.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
K-404]
gi|397902163|gb|EJL18492.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
6603-63]
Length = 429
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 112/330 (33%), Positives = 194/330 (58%), Gaps = 30/330 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I + +++P
Sbjct: 117 LINGVLRQFQRRQEELLAE--FNTRDARYLHPSWLLKRLQKAYPE--QWQSIAEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LRIN+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ I +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRIYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNSPGQLLPTVNKK---QDYDGFFYS 322
D+ + P + ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNQPGAEEGDGFFYA 424
>gi|26249873|ref|NP_755913.1| 16S rRNA methyltransferase B [Escherichia coli CFT073]
gi|227883420|ref|ZP_04001225.1| 16S rRNA methyltransferase B [Escherichia coli 83972]
gi|300979825|ref|ZP_07174727.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 45-1]
gi|301046059|ref|ZP_07193238.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 185-1]
gi|386631168|ref|YP_006150888.1| 16S rRNA methyltransferase B [Escherichia coli str. 'clone D i2']
gi|386636088|ref|YP_006155807.1| 16S rRNA methyltransferase B [Escherichia coli str. 'clone D i14']
gi|386640884|ref|YP_006107682.1| 16S rRNA m5C967 methyltransferase [Escherichia coli ABU 83972]
gi|422364951|ref|ZP_16445460.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 153-1]
gi|432413510|ref|ZP_19656164.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE39]
gi|432433501|ref|ZP_19675925.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE187]
gi|432438097|ref|ZP_19680480.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE188]
gi|432442773|ref|ZP_19685108.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE189]
gi|432447893|ref|ZP_19690189.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE191]
gi|432458409|ref|ZP_19700585.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE201]
gi|432497402|ref|ZP_19739194.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE214]
gi|432506160|ref|ZP_19747879.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE220]
gi|432525615|ref|ZP_19762733.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE230]
gi|432570516|ref|ZP_19807022.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE53]
gi|432594482|ref|ZP_19830794.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE60]
gi|432609322|ref|ZP_19845503.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE67]
gi|432652881|ref|ZP_19888626.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE87]
gi|432785254|ref|ZP_20019431.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE63]
gi|432846368|ref|ZP_20079010.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE141]
gi|432975489|ref|ZP_20164323.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE209]
gi|432997049|ref|ZP_20185631.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE218]
gi|433001646|ref|ZP_20190164.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE223]
gi|433015588|ref|ZP_20203922.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE104]
gi|433025153|ref|ZP_20213126.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE106]
gi|433059769|ref|ZP_20246805.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE124]
gi|433088938|ref|ZP_20275303.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE137]
gi|433117164|ref|ZP_20302949.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE153]
gi|433126853|ref|ZP_20312399.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE160]
gi|433140917|ref|ZP_20326162.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE167]
gi|433150922|ref|ZP_20335922.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE174]
gi|433209411|ref|ZP_20393078.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE97]
gi|433214262|ref|ZP_20397844.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE99]
gi|433325903|ref|ZP_20402909.1| 16S rRNA methyltransferase B [Escherichia coli J96]
gi|442607475|ref|ZP_21022245.1| 16S rRNA (cytosine(967)-C(5))-methyltransferase [Escherichia coli
Nissle 1917]
gi|46396925|sp|Q8FD12.1|RSMB_ECOL6 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|26110301|gb|AAN82487.1|AE016767_247 SUN protein [Escherichia coli CFT073]
gi|227839564|gb|EEJ50030.1| 16S rRNA methyltransferase B [Escherichia coli 83972]
gi|300301944|gb|EFJ58329.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 185-1]
gi|300409431|gb|EFJ92969.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 45-1]
gi|307555376|gb|ADN48151.1| 16S rRNA m5C967 methyltransferase [Escherichia coli ABU 83972]
gi|315292336|gb|EFU51688.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 153-1]
gi|355422067|gb|AER86264.1| 16S rRNA methyltransferase B [Escherichia coli str. 'clone D i2']
gi|355426987|gb|AER91183.1| 16S rRNA methyltransferase B [Escherichia coli str. 'clone D i14']
gi|430933339|gb|ELC53745.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE39]
gi|430950676|gb|ELC69904.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE187]
gi|430960651|gb|ELC78702.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE188]
gi|430963816|gb|ELC81395.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE189]
gi|430970973|gb|ELC87995.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE191]
gi|430979867|gb|ELC96631.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE201]
gi|431020937|gb|ELD34266.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE214]
gi|431035508|gb|ELD46891.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE220]
gi|431048726|gb|ELD58694.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE230]
gi|431097589|gb|ELE02916.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE53]
gi|431125939|gb|ELE28293.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE60]
gi|431135633|gb|ELE37508.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE67]
gi|431187296|gb|ELE86797.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE87]
gi|431326333|gb|ELG13679.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE63]
gi|431392603|gb|ELG76174.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE141]
gi|431486303|gb|ELH65953.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE209]
gi|431502647|gb|ELH81532.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE218]
gi|431504628|gb|ELH83252.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE223]
gi|431527253|gb|ELI03975.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE104]
gi|431532318|gb|ELI08878.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE106]
gi|431566709|gb|ELI39729.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE124]
gi|431602388|gb|ELI71827.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE137]
gi|431631517|gb|ELI99824.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE153]
gi|431641422|gb|ELJ09161.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE160]
gi|431656978|gb|ELJ23950.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE167]
gi|431667788|gb|ELJ34365.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE174]
gi|431728547|gb|ELJ92225.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE97]
gi|431732557|gb|ELJ96009.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE99]
gi|432345917|gb|ELL40409.1| 16S rRNA methyltransferase B [Escherichia coli J96]
gi|441711332|emb|CCQ08222.1| 16S rRNA (cytosine(967)-C(5))-methyltransferase [Escherichia coli
Nissle 1917]
Length = 429
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 197/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQDELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL ++G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVQLETPAPVHALPGFEEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVLAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWSHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|416832659|ref|ZP_11899822.1| 16S rRNA methyltransferase B [Escherichia coli O157:H7 str. LSU-61]
gi|320666401|gb|EFX33384.1| 16S rRNA methyltransferase B [Escherichia coli O157:H7 str. LSU-61]
Length = 429
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 115/333 (34%), Positives = 197/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FNTSDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LRIN+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYGNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|402306313|ref|ZP_10825361.1| ribosomal RNA small subunit methyltransferase B [Haemophilus
sputorum HK 2154]
gi|400375219|gb|EJP28127.1| ribosomal RNA small subunit methyltransferase B [Haemophilus
sputorum HK 2154]
Length = 433
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 122/339 (35%), Positives = 186/339 (54%), Gaps = 35/339 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
+ NA+LR FLR++ I + +W +P W +NQ+K Y N W++I++ +
Sbjct: 116 LTNAVLRRFLREQEAILAKV-----DKHWQTLHPEWLVNQLKKAYLN---WRDIVEANNA 167
Query: 59 KPPLTLRINQRKTTLISYNKLLKK----SGLETTIIGPLAIKLHTPISISKIPKFFNGFC 114
+PP+ LR+NQ++++ +Y LL + S T + AI L+ P ++S++P F G
Sbjct: 168 RPPMWLRVNQQQSSRENYQALLGELVNLSPNPTACVPDCAILLNQPTAVSRLPHFDEGRV 227
Query: 115 SIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISE 173
++QDA AQ +A LLD + G +LDAC+APGGKT H+LE A K+I++D SRL + E
Sbjct: 228 TVQDAHAQWSAELLDAQDGELILDACAAPGGKTTHILEKAPKAKVIALDIEASRLQRVKE 287
Query: 174 NLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVR 233
NL RL +A +I D S+ + FDRIL D PC+ +GV+R
Sbjct: 288 NLARLGQQAEVICGDASR---------------PETWLAEGVMFDRILLDAPCSATGVIR 332
Query: 234 RNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKN 293
R+PDI WLR+++DI L+ +IL+ LW LKP G LL+ TCS+ E+ EQ F
Sbjct: 333 RHPDIKWLRQESDIPALAALQAQILSALWARLKPNGVLLYATCSILPSENREQIERFVAE 392
Query: 294 HKDSIRLNSPGQLLPTVNKK-----QDYDGFFYSLFQKR 327
+ ++ T K+ + DGFFY+ K+
Sbjct: 393 NANAQLTEMDFHTEKTAMKQFFPQNEGGDGFFYAKLTKQ 431
>gi|417735362|ref|ZP_12384007.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
2747-71]
gi|420375832|ref|ZP_14875655.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
1235-66]
gi|332754010|gb|EGJ84383.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
2747-71]
gi|391309266|gb|EIQ66942.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
1235-66]
Length = 420
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 112/330 (33%), Positives = 194/330 (58%), Gaps = 30/330 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I + +++P
Sbjct: 108 LINGVLRQFQRRQEELLAE--FNTRDARYLHPSWLLKRLQKAYPE--QWQSIAEANNQRP 163
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LRIN+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 164 PMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 223
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ I +NLKR
Sbjct: 224 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRIYDNLKR 283
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 284 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 325
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 326 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 385
Query: 296 DSIRLNSPGQLLPTVNKK---QDYDGFFYS 322
D+ + P + ++ DGFFY+
Sbjct: 386 DAELCETGTPEQPGKQNQPGAEEGDGFFYA 415
>gi|417684275|ref|ZP_12333616.1| ribosomal RNA small subunit methyltransferase B [Shigella boydii
3594-74]
gi|332090533|gb|EGI95631.1| ribosomal RNA small subunit methyltransferase B [Shigella boydii
3594-74]
Length = 454
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 198/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 142 LINGVLRQFQRQQEELLAK--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 197
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 198 PMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 257
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 258 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 317
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 318 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 359
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 360 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 419
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 420 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 449
>gi|344344899|ref|ZP_08775758.1| sun protein [Marichromatium purpuratum 984]
gi|343803593|gb|EGV21500.1| sun protein [Marichromatium purpuratum 984]
Length = 447
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 116/340 (34%), Positives = 176/340 (51%), Gaps = 36/340 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR FLR++ + + +N W P W Q++ +P+ W+ I+ +
Sbjct: 127 LVNALLRRFLRERETLLAAIEHNPR-VRWPVPEWLREQLRRDWPD--DWERIIAASDTRA 183
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+TLR+N + T Y L G++ P + L ++P F G S+QD
Sbjct: 184 PMTLRVNPLRGTRADYLAELAAEGIDAAPAAGCPHGLTLAHARPTERLPGFVEGRVSVQD 243
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA--DIKLISVDNNLSRLNMISENLK 176
A AQLAA LL+ G VLDAC+APGGK+ +LE A ++ L ++D + RL ++ L
Sbjct: 244 AGAQLAAELLEAAPGTRVLDACAAPGGKSAAILERAGGELALTALDVDGERLQSVAALLD 303
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L+ATL+ +D ++ + F+RIL D+PC+ +GV+RR+P
Sbjct: 304 RLGLRATLVEADAARPEGD----------------WAAPGFERILLDVPCSATGVIRRHP 347
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLRR DI L IL +W +L PGG+LL+ TCSL +E+ Q F + H +
Sbjct: 348 DIKWLRRAEDIAALCDQQRAILEAIWPLLAPGGRLLYATCSLLGDENHRQVAAFLERHPE 407
Query: 297 SIRLNSPG----------QLLPTVNKKQDYDGFFYSLFQK 326
+ PG QLLP+ DGF+Y+L +K
Sbjct: 408 AHECPLPGAPGVARPHGRQLLPSSGGS---DGFYYALLEK 444
>gi|419912482|ref|ZP_14430936.1| 16S rRNA methyltransferase B [Escherichia coli KD1]
gi|388391664|gb|EIL53116.1| 16S rRNA methyltransferase B [Escherichia coli KD1]
Length = 429
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 197/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQDELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL ++G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVQLETPAPVHALPGFEEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVLAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWSHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|386620896|ref|YP_006140476.1| 16S ribosomal RNA methyltransferase B [Escherichia coli NA114]
gi|387831166|ref|YP_003351103.1| putative rRNA methylase [Escherichia coli SE15]
gi|432423694|ref|ZP_19666232.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE178]
gi|432501843|ref|ZP_19743594.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE216]
gi|432560556|ref|ZP_19797211.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE49]
gi|432696153|ref|ZP_19931345.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE162]
gi|432707630|ref|ZP_19942706.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE6]
gi|432922420|ref|ZP_20125264.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE173]
gi|432929150|ref|ZP_20130200.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE175]
gi|432982732|ref|ZP_20171502.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE211]
gi|433098088|ref|ZP_20284263.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE139]
gi|433107536|ref|ZP_20293500.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE148]
gi|281180323|dbj|BAI56653.1| putative rRNA methylase [Escherichia coli SE15]
gi|333971397|gb|AEG38202.1| 16S ribosomal RNA methyltransferase B [Escherichia coli NA114]
gi|430942038|gb|ELC62176.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE178]
gi|431026022|gb|ELD39097.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE216]
gi|431088617|gb|ELD94487.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE49]
gi|431231379|gb|ELF27140.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE162]
gi|431255164|gb|ELF48418.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE6]
gi|431435418|gb|ELH17027.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE173]
gi|431440558|gb|ELH21886.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE175]
gi|431489330|gb|ELH68957.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE211]
gi|431613116|gb|ELI82317.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE139]
gi|431624661|gb|ELI93259.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE148]
Length = 429
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 114/331 (34%), Positives = 194/331 (58%), Gaps = 32/331 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQDELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL ++G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVQLETPAPVHALPGFEEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVLAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L +KAT+ D N ++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 293 LGMKATVKQGD----------------GRNPSQWCGEQQFDRILLDAPCSATGVIRRHPD 336
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F + D+
Sbjct: 337 IKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA 396
Query: 298 IRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
+ PG Q LP ++ DGFFY+
Sbjct: 397 ELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|432555372|ref|ZP_19792090.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE47]
gi|431081016|gb|ELD87795.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE47]
Length = 429
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 197/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQDELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL ++G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVQLETPAPVHALPGFEEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVLAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWSHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|420338988|ref|ZP_14840540.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
K-315]
gi|391257216|gb|EIQ16336.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
K-315]
Length = 420
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 197/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 108 LINGVLRQFQRQQEELLAK--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 163
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 164 PMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 223
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 224 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 283
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 284 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 325
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 326 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 385
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP + DGFFY+
Sbjct: 386 DAELCETGTPEQPGKQNLPGAGEG---DGFFYA 415
>gi|260771086|ref|ZP_05880014.1| ribosomal RNA small subunit methyltransferase B [Vibrio furnissii
CIP 102972]
gi|260613975|gb|EEX39166.1| ribosomal RNA small subunit methyltransferase B [Vibrio furnissii
CIP 102972]
Length = 426
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 116/337 (34%), Positives = 189/337 (56%), Gaps = 34/337 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R + + M + Y +P W + ++ YP QW+ I++ + K
Sbjct: 113 LINAVLRNYQRNQDALDTEAMSHNAGKY-GHPSWLLKLLQNAYPQ--QWEAIVEANNSKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + +Y LL +++++ A+KL P ++++P F G+ S+QD
Sbjct: 170 PMWLRVNHQHHERDAYQALLNHENIDSSVHSQAHDALKLAAPCDVTQLPGFAQGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQLA L + G +LD C+APGGKT H+LE ++++D + +RL + +NLKR
Sbjct: 230 AAAQLALHYLQPQDGELILDCCAAPGGKTAHILERTHGCDVVAIDCDDTRLKRVHDNLKR 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
LNL A ++ D R+ ++++ FDRIL D PC+ +GV+RR+
Sbjct: 290 LNLSAKVVCGDA------------------RYPEQWWQGGQFDRILLDAPCSATGVIRRH 331
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIF----S 291
PDI WLRR DI L++ +IL+ +W+ LKPGG L++ TCS+ +E+ Q F S
Sbjct: 332 PDIKWLRRGEDIAALAELQREILDAMWQQLKPGGTLVYATCSITPQENVLQVKDFLARTS 391
Query: 292 KNHKDSIRLNSPG-QLLPTVNKKQDYDGFFYSLFQKR 327
L++PG Q+LP ++D DGF+Y++ K+
Sbjct: 392 NAQLVGSELDNPGRQILPG---EEDMDGFYYAVLTKQ 425
>gi|194435072|ref|ZP_03067310.1| ribosomal RNA small subunit methyltransferase B [Shigella
dysenteriae 1012]
gi|416278429|ref|ZP_11644586.1| Ribosomal RNA small subunit methyltransferase B [Shigella boydii
ATCC 9905]
gi|417674257|ref|ZP_12323692.1| ribosomal RNA small subunit methyltransferase B [Shigella
dysenteriae 155-74]
gi|194416679|gb|EDX32810.1| ribosomal RNA small subunit methyltransferase B [Shigella
dysenteriae 1012]
gi|320182714|gb|EFW57600.1| Ribosomal RNA small subunit methyltransferase B [Shigella boydii
ATCC 9905]
gi|332086286|gb|EGI91442.1| ribosomal RNA small subunit methyltransferase B [Shigella
dysenteriae 155-74]
Length = 429
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 111/330 (33%), Positives = 195/330 (59%), Gaps = 30/330 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRRQEELLAE--FNTSDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LRIN+ + + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRINRTQHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYANLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNSPGQLLPTVNKK---QDYDGFFYS 322
D+ + P + ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNQPGAEEGDGFFYA 424
>gi|384544870|ref|YP_005728934.1| Ribosomal RNA small subunit methyltransferase B [Shigella flexneri
2002017]
gi|281602657|gb|ADA75641.1| Ribosomal RNA small subunit methyltransferase B [Shigella flexneri
2002017]
Length = 436
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 112/330 (33%), Positives = 194/330 (58%), Gaps = 30/330 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I + +++P
Sbjct: 124 LINGVLRQFQRRQEELLAE--FNTRDARYLHPSWLLKRLQKAYPE--QWQSIAEANNQRP 179
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LRIN+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 180 PMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 239
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ I +NLKR
Sbjct: 240 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRIYDNLKR 299
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 300 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 341
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 342 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 401
Query: 296 DSIRLNSPGQLLPTVNKK---QDYDGFFYS 322
D+ + P + ++ DGFFY+
Sbjct: 402 DAELCETGTPEQPGKQNQPGAEEGDGFFYA 431
>gi|422379714|ref|ZP_16459900.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 57-2]
gi|432734039|ref|ZP_19968863.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE45]
gi|432761124|ref|ZP_19995614.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE46]
gi|324009054|gb|EGB78273.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 57-2]
gi|431271932|gb|ELF63050.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE45]
gi|431306431|gb|ELF94744.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE46]
Length = 429
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 197/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL ++G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVLAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWSHLKSGGTLVYATCSVLPEENSLQIKAFLQRTT 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|283788076|ref|YP_003367941.1| ribosomal RNA small subunit methyltransferase B [Citrobacter
rodentium ICC168]
gi|282951530|emb|CBG91229.1| ribosomal RNA small subunit methyltransferase B [Citrobacter
rodentium ICC168]
Length = 429
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 112/330 (33%), Positives = 193/330 (58%), Gaps = 30/330 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R + + ++ E+ + +P W + +++ +P QW++I++ +++P
Sbjct: 117 LINGVLRQFQRNQDALLAEFAHS--EARFLHPSWLLKRLQKAWPE--QWESIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLE--TTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T ++ LL+++G++ T P A++L TP+ + +P F G+ + QD
Sbjct: 173 PMWLRVNRTHHTRNAWLALLEEAGMKGFTHPDYPDAVRLDTPVPVHALPGFDKGWVTAQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G +LD C+APGGKT H+LE A D K+++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCVAFLAPQNGEQILDLCAAPGGKTTHILEAAPDAKVLAVDVDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L + AT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMNATV------------------KQGDGRYPLQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L+ +IL+ +W LKPGG L++ TCS+ EE+ +Q F +
Sbjct: 335 PDIKWLRRDRDIAELAALQAEILDAVWPHLKPGGTLVYATCSVLPEENSQQIKAFLQRTA 394
Query: 296 DSIRLNSPGQLLPTVNK---KQDYDGFFYS 322
D+ + LP + ++ DGFFY+
Sbjct: 395 DATLSETGTPELPGLQNLPGAEEGDGFFYA 424
>gi|432545019|ref|ZP_19781853.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE236]
gi|432550501|ref|ZP_19787260.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE237]
gi|432623643|ref|ZP_19859660.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE76]
gi|432720410|ref|ZP_19955374.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE9]
gi|432817050|ref|ZP_20050810.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE115]
gi|431071846|gb|ELD79603.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE236]
gi|431077403|gb|ELD84654.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE237]
gi|431156571|gb|ELE57238.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE76]
gi|431260445|gb|ELF52542.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE9]
gi|431361453|gb|ELG48034.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE115]
Length = 429
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 197/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL ++G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHVLPGFEEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMAWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|386389452|ref|ZP_10074267.1| ribosomal RNA small subunit methyltransferase B [Haemophilus
paraphrohaemolyticus HK411]
gi|385695547|gb|EIG26105.1| ribosomal RNA small subunit methyltransferase B [Haemophilus
paraphrohaemolyticus HK411]
Length = 433
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 121/341 (35%), Positives = 192/341 (56%), Gaps = 41/341 (12%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
+ N +LR FLR++ +I + + +W +P W++N++K YP+ W+ I++ ++
Sbjct: 117 LTNGVLRRFLREQEQILA-----VVDKHWQTLHPEWFVNKIKKAYPH---WREIVEANNQ 168
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLE----TTIIGPLAIKLHTPISISKIPKFFNGFC 114
+PP+ +R N + Y LL + + T + AI L P+S++++P F G+
Sbjct: 169 RPPMWVRANVQHVQPKDYVALLGELANQRENPTACVPDCAILLENPVSVNQLPHFEQGWA 228
Query: 115 SIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLI-SVDNNLSRLNMISE 173
++QDA AQ +A LL+ ++ +LDAC+APGGKT H+LE + ++ ++D +RL + E
Sbjct: 229 TVQDAHAQWSAELLNAQNNETILDACAAPGGKTTHILERSPQAVVFALDIEENRLKRVRE 288
Query: 174 NLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVR 233
NL RLN AT+I D S+ + K FDRIL D PC+ +GV+R
Sbjct: 289 NLARLNQTATVICGDASEPDT---------------WLEKGVMFDRILLDAPCSATGVIR 333
Query: 234 RNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKN 293
R+PDI WLR++ DI +L+ KIL LW LKP G LL+ TCS+ EE+ Q F +N
Sbjct: 334 RHPDIKWLRKEADITELASLQAKILEALWARLKPNGILLYATCSILPEENSLQIQRFLEN 393
Query: 294 HKD--SIRLNSPGQLLPTVNKKQDY------DGFFYSLFQK 326
H D S+ ++ G+ V +KQ + DGFFY+ +K
Sbjct: 394 HSDAESVEMDFHGE---KVTEKQFFPQPNGGDGFFYAKLRK 431
>gi|218706896|ref|YP_002414415.1| 16S rRNA methyltransferase B [Escherichia coli UMN026]
gi|293406886|ref|ZP_06650810.1| 16S rRNA methyltransferase B [Escherichia coli FVEC1412]
gi|298382627|ref|ZP_06992222.1| 16S rRNA methyltransferase B [Escherichia coli FVEC1302]
gi|300896636|ref|ZP_07115153.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 198-1]
gi|331664901|ref|ZP_08365802.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TA143]
gi|387608995|ref|YP_006097851.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
042]
gi|417588391|ref|ZP_12239154.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
STEC_C165-02]
gi|419933798|ref|ZP_14450948.1| 16S rRNA methyltransferase B [Escherichia coli 576-1]
gi|432355282|ref|ZP_19598549.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE2]
gi|432403657|ref|ZP_19646401.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE26]
gi|432427918|ref|ZP_19670401.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE181]
gi|432462622|ref|ZP_19704755.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE204]
gi|432477614|ref|ZP_19719603.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE208]
gi|432491062|ref|ZP_19732925.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE213]
gi|432519476|ref|ZP_19756655.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE228]
gi|432539634|ref|ZP_19776527.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE235]
gi|432633154|ref|ZP_19869074.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE80]
gi|432642844|ref|ZP_19878669.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE83]
gi|432667841|ref|ZP_19903413.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE116]
gi|432772035|ref|ZP_20006349.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE54]
gi|432841089|ref|ZP_20074548.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE140]
gi|432888620|ref|ZP_20102333.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE158]
gi|432914859|ref|ZP_20120186.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE190]
gi|433020419|ref|ZP_20208574.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE105]
gi|433054912|ref|ZP_20242078.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE122]
gi|433069603|ref|ZP_20256376.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE128]
gi|433160389|ref|ZP_20345215.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE177]
gi|433180109|ref|ZP_20364494.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE82]
gi|433205005|ref|ZP_20388755.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE95]
gi|254766859|sp|B7NDR0.1|RSMB_ECOLU RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|218433993|emb|CAR14910.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli
UMN026]
gi|284923295|emb|CBG36389.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
042]
gi|291425697|gb|EFE98731.1| 16S rRNA methyltransferase B [Escherichia coli FVEC1412]
gi|298276463|gb|EFI17981.1| 16S rRNA methyltransferase B [Escherichia coli FVEC1302]
gi|300359513|gb|EFJ75383.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 198-1]
gi|331057411|gb|EGI29397.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TA143]
gi|345332464|gb|EGW64920.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
STEC_C165-02]
gi|388410164|gb|EIL70415.1| 16S rRNA methyltransferase B [Escherichia coli 576-1]
gi|430872753|gb|ELB96333.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE2]
gi|430923070|gb|ELC43807.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE26]
gi|430951756|gb|ELC70964.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE181]
gi|430985885|gb|ELD02468.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE204]
gi|431002221|gb|ELD17734.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE208]
gi|431018210|gb|ELD31646.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE213]
gi|431047728|gb|ELD57713.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE228]
gi|431067050|gb|ELD75659.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE235]
gi|431167337|gb|ELE67602.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE80]
gi|431177610|gb|ELE77524.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE83]
gi|431197672|gb|ELE96499.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE116]
gi|431324026|gb|ELG11482.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE54]
gi|431386321|gb|ELG70277.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE140]
gi|431413973|gb|ELG96722.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE158]
gi|431435927|gb|ELH17534.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE190]
gi|431528056|gb|ELI04767.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE105]
gi|431567243|gb|ELI40244.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE122]
gi|431580168|gb|ELI52734.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE128]
gi|431674719|gb|ELJ40875.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE177]
gi|431698413|gb|ELJ63457.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE82]
gi|431716928|gb|ELJ81032.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE95]
Length = 429
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 197/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FNASDACYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL ++G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHVLPGFEEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMAWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLIYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|197249972|ref|YP_002148329.1| 16S rRNA methyltransferase GidB [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|440763490|ref|ZP_20942529.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Agona str. SH11G1113]
gi|440766152|ref|ZP_20945152.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Agona str. SH08SF124]
gi|440772257|ref|ZP_20951163.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Agona str. SH10GFN094]
gi|224493258|sp|B5F7R5.1|RSMB_SALA4 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|197213675|gb|ACH51072.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Agona str. SL483]
gi|436419224|gb|ELP17103.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Agona str. SH10GFN094]
gi|436419715|gb|ELP17589.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Agona str. SH11G1113]
gi|436423659|gb|ELP21466.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Agona str. SH08SF124]
Length = 429
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 111/332 (33%), Positives = 193/332 (58%), Gaps = 34/332 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + ++ + +P W + +++ YP QW+ I++ +++P
Sbjct: 117 LINGVLRQFQRQQETLLNE--FATSDARFLHPGWLVKRLQNAYPT--QWQRIIEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T + LL+ +G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ A L ++G ++LD C+APGGKT H+LE+A + +++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVLAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W L PGG L++ TCS+ EE+ +Q F +
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILDAVWPRLNPGGTLVYATCSVLPEENRDQIKAFLQRTP 394
Query: 296 DSI-----RLNSPGQLLPTVNKKQDYDGFFYS 322
D+ + PGQ + ++ DGFFY+
Sbjct: 395 DAALSETGTPDQPGQQ--NLPGGEEGDGFFYA 424
>gi|332530506|ref|ZP_08406447.1| 16S rRNA methyltransferase B [Hylemonella gracilis ATCC 19624]
gi|332040075|gb|EGI76460.1| 16S rRNA methyltransferase B [Hylemonella gracilis ATCC 19624]
Length = 469
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 128/358 (35%), Positives = 192/358 (53%), Gaps = 54/358 (15%)
Query: 2 INAILREFLRKKGEIFKSKMYNIHE-------SYWNYPIWWINQVKITYPNFFQWKNILD 54
+NA LR FLR++ ++ + +I E + WN+P WWI +++ P W+ +LD
Sbjct: 130 LNACLRRFLRERVDL----LADIDEDPATALVARWNHPRWWIERLRQEAP--AHWQAVLD 183
Query: 55 VGHKKPPLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFC 114
+ PPLTLR+N + + +Y L+ +GL G + L P+ + +IP F G
Sbjct: 184 ANNNPPPLTLRVNLAQGPVETYLADLQVAGLAAWRNGAQGVTLEQPLPVHRIPGFAQGRV 243
Query: 115 SIQDAAAQLA------------APLLDIRSGMYVLDACSAPGGKTCHLLEIA-----DIK 157
S+QDAAAQLA P IR VLDAC+APGGKT HLLE+ D +
Sbjct: 244 SVQDAAAQLAAPLLLDDLPAARTPGRPIR----VLDACAAPGGKTAHLLELIAARGLDAE 299
Query: 158 LISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYF 217
+I++D + R I ENL+RL L+A ++ +D + + F
Sbjct: 300 VIALDVDAERCRRIDENLQRLGLRAQVVAADAGQ-----------AAAWRAAGLGDDLRF 348
Query: 218 DRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277
D IL D PCT SG+VRR+PD+ WLRR++DI L++ ++L LW L PGG++L+ TCS
Sbjct: 349 DAILLDAPCTASGIVRRHPDVRWLRRESDIANLARQQARLLAALWPRLLPGGRMLYCTCS 408
Query: 278 LWFEESEEQAIIFSKNHKDSIRLNSPGQLLP---------TVNKKQDYDGFFYSLFQK 326
++ E EEQ + F ++K++ +PG L P T N + +DGF+Y+L K
Sbjct: 409 VFKAEGEEQVLAFLAHNKEASLRPAPGHLWPHSAIQSEALTDNAIRGHDGFYYALLSK 466
>gi|432724753|ref|ZP_19959666.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE17]
gi|431261972|gb|ELF53962.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE17]
Length = 429
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 196/333 (58%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQDELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL ++G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVQLETPAPVHALPGFEEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L + G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQKGEHILDLCAAPGGKTTHILEVAPEAQVLAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|237728623|ref|ZP_04559104.1| 16S rRNA m5C967 methyltransferase [Citrobacter sp. 30_2]
gi|226909245|gb|EEH95163.1| 16S rRNA m5C967 methyltransferase [Citrobacter sp. 30_2]
Length = 439
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 118/333 (35%), Positives = 189/333 (56%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + + + +P W + ++K YP QW+ IL+ +++P
Sbjct: 127 LINGVLRQFQRRQDELLAE--FAQSDLRFLHPSWLVKRIKSAYPQ--QWEAILEANNQRP 182
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T ++ LL ++GL P A++L TP + +P F G+ ++QD
Sbjct: 183 PMWLRVNRNHHTRDAWLDLLTEAGLTGFPHPDYPDAVRLETPAPVHALPGFDEGWVTVQD 242
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIK-LISVDNNLSRLNMISENLKR 177
A+AQ L G +LD C APGGKT H+LE+A + +++VD + RL+ + +NLKR
Sbjct: 243 ASAQGCVNYLLPEDGEQILDLCCAPGGKTTHILEVAPLANVMAVDVDEKRLSRVYDNLKR 302
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 303 LGMKATV------------------KQGDGRYPQQWCGEQQFDRILLDAPCSATGVIRRH 344
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +ILN W LK GG L++ TCS+ EE+++Q F
Sbjct: 345 PDIKWLRRDRDIAELAQLQAEILNATWSHLKSGGTLVYATCSILPEENQQQIAAFLARTP 404
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D++ + PG Q LP +D DGFFY+
Sbjct: 405 DAVLSETGTPEKPGRQNLPGA---EDGDGFFYA 434
>gi|417715254|ref|ZP_12364198.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
K-272]
gi|332996759|gb|EGK16384.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
K-272]
Length = 429
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 111/330 (33%), Positives = 194/330 (58%), Gaps = 30/330 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I + +++P
Sbjct: 117 LINGVLRQFQRRQEELLAE--FNTRDARYLHPSWLLKRLQKAYPE--QWQSIAEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LRIN+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNSPGQLLPTVNKK---QDYDGFFYS 322
D+ + P + ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNQPGAEEGDGFFYA 424
>gi|417829794|ref|ZP_12476337.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
J1713]
gi|420322256|ref|ZP_14824079.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
2850-71]
gi|420334096|ref|ZP_14835724.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
K-1770]
gi|224493306|sp|Q0T014.2|RSMB_SHIF8 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|335573686|gb|EGM60030.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
J1713]
gi|391243141|gb|EIQ02437.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
K-1770]
gi|391246046|gb|EIQ05310.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
2850-71]
Length = 429
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 111/330 (33%), Positives = 194/330 (58%), Gaps = 30/330 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I + +++P
Sbjct: 117 LINGVLRQFQRRQEELLAE--FNTRDARYLHPSWLLKRLQKAYPE--QWQSIAEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LRIN+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNSPGQLLPTVNKK---QDYDGFFYS 322
D+ + P + ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNQPGAEEGDGFFYA 424
>gi|218702051|ref|YP_002409680.1| 16S rRNA methyltransferase B [Escherichia coli IAI39]
gi|300935286|ref|ZP_07150297.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 21-1]
gi|386626092|ref|YP_006145820.1| 16S rRNA methyltransferase B [Escherichia coli O7:K1 str. CE10]
gi|432399235|ref|ZP_19642009.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE25]
gi|432408360|ref|ZP_19651063.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE28]
gi|432682020|ref|ZP_19917378.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE143]
gi|432729336|ref|ZP_19964210.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE18]
gi|432743023|ref|ZP_19977737.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE23]
gi|432890734|ref|ZP_20103589.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE165]
gi|432992387|ref|ZP_20181045.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE217]
gi|433112519|ref|ZP_20298374.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE150]
gi|254766856|sp|B7NLK8.1|RSMB_ECO7I RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|218372037|emb|CAR19897.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli
IAI39]
gi|300459489|gb|EFK22982.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 21-1]
gi|349739828|gb|AEQ14534.1| 16S rRNA methyltransferase B [Escherichia coli O7:K1 str. CE10]
gi|430913108|gb|ELC34238.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE25]
gi|430927231|gb|ELC47795.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE28]
gi|431217567|gb|ELF15133.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE143]
gi|431271153|gb|ELF62292.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE18]
gi|431281180|gb|ELF72083.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE23]
gi|431431028|gb|ELH12806.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE165]
gi|431491537|gb|ELH71141.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE217]
gi|431625768|gb|ELI94326.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE150]
Length = 429
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 197/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQDELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL ++G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVQLETPAPVHALPGFEEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVLAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|331684931|ref|ZP_08385517.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
H299]
gi|450193529|ref|ZP_21892036.1| 16S rRNA methyltransferase B [Escherichia coli SEPT362]
gi|331077302|gb|EGI48514.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
H299]
gi|449317422|gb|EMD07511.1| 16S rRNA methyltransferase B [Escherichia coli SEPT362]
Length = 429
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 197/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FNASDACYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL ++G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHVLPGFEEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMAWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|227354905|ref|ZP_03839319.1| ribosomal RNA small subunit methyltransferase B [Proteus mirabilis
ATCC 29906]
gi|227164987|gb|EEI49826.1| ribosomal RNA small subunit methyltransferase B [Proteus mirabilis
ATCC 29906]
Length = 422
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 194/332 (58%), Gaps = 31/332 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ ++ + N ++S + +P W + ++K YP W++I++ ++KP
Sbjct: 117 LINGVLRQFQRQQ-DVLMERFQN-NDSRYLHPSWLLTRIKNAYPEL--WESIIEGNNQKP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLE--TTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+NQ + Y LL+K G+ + P AI+L TP ++ +P F G+ ++QD
Sbjct: 173 PMWLRVNQIHHSREQYLALLEKEGISAFSDDHHPNAIRLETPCNVHLLPGFSEGWITVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
+AQ A LL ++ +LD C+APGGKT H+LEIA ++++D + RL + ENL R
Sbjct: 233 RSAQRCAELLAPQNNEQILDLCAAPGGKTTHILEIAPKAHVLAIDIDEQRLARVKENLNR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L L AT+ K + R+ ++ N FDRIL D PC+ +GV+RR+
Sbjct: 293 LKLHATV------------------KSGDGRYPEQWCANMQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ +Q F + +
Sbjct: 335 PDIKWLRRNEDIAQLAQIQKEILHAIWPYLKSGGTLVYATCSILPEENSQQIAAFLSSMQ 394
Query: 296 DSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 327
D+ + + Q LP +K DGFFY+L K+
Sbjct: 395 DA-QCDYQHQCLP---EKYSGDGFFYALINKK 422
>gi|307132808|ref|YP_003884824.1| ribosomal RNA small subunit methyltransferase B [Dickeya dadantii
3937]
gi|306530337|gb|ADN00268.1| Ribosomal RNA small subunit methyltransferase B [Dickeya dadantii
3937]
Length = 431
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 117/331 (35%), Positives = 187/331 (56%), Gaps = 32/331 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + ++ N + + + +P W + ++K YP QW+ I++ ++ P
Sbjct: 117 LINGVLRQFQRQQDEL-QQRLQN-NPARYAHPDWLLQRLKKAYPQ--QWERIVEANNQHP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLET--TIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N++ T +Y LL++ + P AI+L TP +++++P F G+ ++QD
Sbjct: 173 PMWLRVNRQHHTRAAYLALLQEKEITAYPHAFYPDAIRLGTPCAVNQLPGFEQGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L + +LD C+APGGKT H+LE A +++VD + RL + ENL+R
Sbjct: 233 ASAQGCIHWLAPQDHEEILDLCAAPGGKTTHILEAAPHAHVLAVDVDEQRLKRVRENLQR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L A + D + +K FDRIL D PC+ +GV+RR+PD
Sbjct: 293 LGQHAEVKCGD----------------GRTPTEWCGDKLFDRILLDAPCSATGVIRRHPD 336
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI +L+ IL +W LK GG L++ TCS+ EE+ +Q F + H D+
Sbjct: 337 IKWLRRDSDIAELASLQQAILEAIWPRLKSGGTLVYATCSILPEENHQQVAAFLQRHPDA 396
Query: 298 I-----RLNSPG-QLLPTVNKKQDYDGFFYS 322
+ RL PG Q LP +D DGFFY+
Sbjct: 397 VLVDTGRLEHPGIQNLPAA---EDGDGFFYA 424
>gi|126668178|ref|ZP_01739139.1| Fmu, rRNA SAM-dependent methyltransferase [Marinobacter sp. ELB17]
gi|126627327|gb|EAZ97963.1| Fmu, rRNA SAM-dependent methyltransferase [Marinobacter sp. ELB17]
Length = 432
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 117/340 (34%), Positives = 193/340 (56%), Gaps = 40/340 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++N +LR R+ G +K S +++P W I +++ +P+ W+ I+D + +
Sbjct: 116 LVNGVLRSAERE-GAPAAAK----DTSRYSHPGWMIEKLRHNWPD--DWQAIVDANNTQA 168
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLET--TIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+TLR+N + + Y +LL +G++ T P I+L P+ + +P F G S+QD
Sbjct: 169 PMTLRVNALRFSRDEYLQLLLDAGIDASATRFAPHGIQLARPVPVDALPWFAEGAVSVQD 228
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQL LLD+ G +LDAC+APGGKTC +LE +++++D + RL + ENL
Sbjct: 229 EAAQLCTTLLDLAPGQRILDACAAPGGKTCAILESCPQAAEVVAIDESAQRLPRVQENLD 288
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL+L A+L+ +D + I+ +++ + FDRIL DLPC+ SGV+RR+P
Sbjct: 289 RLDLHASLLQADAADID----------------QWWDGQPFDRILLDLPCSASGVIRRHP 332
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI LRR++D+ L++ +L +W++L+PGG+L++ TCS++ +E+ F K D
Sbjct: 333 DIKLLRRESDVVPLAQIQLGLLVAMWRILQPGGRLVYATCSVFPQENHRIVQRFCKQQTD 392
Query: 297 SI---------RLNSPG-QLLPTVNKKQDYDGFFYSLFQK 326
S R G QLLP + +DGFFY++ +K
Sbjct: 393 SELITIEALWGRTMPAGRQLLPLNDG---HDGFFYAVLEK 429
>gi|154707343|ref|YP_001423631.1| 16S rRNA m(5)C 967 methyltransferase [Coxiella burnetii Dugway
5J108-111]
gi|165922514|ref|ZP_02219685.1| ribosomal RNA small subunit methyltransferase B [Coxiella burnetii
Q321]
gi|154356629|gb|ABS78091.1| 16S rRNA m(5)C 967 methyltransferase [Coxiella burnetii Dugway
5J108-111]
gi|165916719|gb|EDR35323.1| ribosomal RNA small subunit methyltransferase B [Coxiella burnetii
Q321]
Length = 430
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 125/343 (36%), Positives = 192/343 (55%), Gaps = 39/343 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR F+ +K E+ I E + +P+W+I +K +P+ W++IL + +P
Sbjct: 108 LINKLLRRFIAEKDELLTFTEKTI-EGQYAHPLWFIQHIKKAWPD--HWESILIANNARP 164
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+TLR+N K + Y ++L + + + P AI+L P S+ ++P F G+C IQD
Sbjct: 165 PMTLRVNLTKISREIYLEMLDQKNISAKPLDFLPAAIQLEKPCSVHQLPGFNEGYCYIQD 224
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEI-ADIK-LISVDNNLSRLNMISENLK 176
AA Q AA LL + + VLDAC+APG KT H+LE+ +K L+++DNN RLN I EN+
Sbjct: 225 AAGQFAAYLLKLENNQTVLDACAAPGSKTSHILEVNPHLKTLVAIDNNKQRLNRIKENIT 284
Query: 177 RLNLKA---TLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVR 233
RL L+ +L+D+S+I+ ++ + FDRIL D PC+ +GV+R
Sbjct: 285 RLGLRQEHLQCLLADVSQID----------------QWSSGELFDRILLDAPCSATGVIR 328
Query: 234 RNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKN 293
R+PDI LR+ DI + + ++LN LW +LK GG LL+ TCS+ +E+E+ F
Sbjct: 329 RHPDIKLLRQPGDISQYHQKKLQLLNALWTVLKAGGFLLYSTCSVLPDENEKVIEEFLST 388
Query: 294 H----------KDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 326
H ++L Q LP + K DGF+YSL K
Sbjct: 389 HDKVELSPTNVHGGLQLKYGVQQLPGQDNK---DGFYYSLLFK 428
>gi|383180462|ref|YP_005458467.1| 16S rRNA methyltransferase B [Shigella sonnei 53G]
gi|418268755|ref|ZP_12887424.1| ribosomal RNA small subunit methyltransferase B [Shigella sonnei
str. Moseley]
gi|397896431|gb|EJL12850.1| ribosomal RNA small subunit methyltransferase B [Shigella sonnei
str. Moseley]
Length = 429
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 113/333 (33%), Positives = 197/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F ++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQHQQEELLAE--FNTSDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVHDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|438140301|ref|ZP_20874903.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Pullorum str. ATCC 9120]
gi|434939888|gb|ELL46624.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Pullorum str. ATCC 9120]
Length = 429
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 111/332 (33%), Positives = 194/332 (58%), Gaps = 34/332 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQETLLNE--FATSDARFLHPGWLVKRLQNAYPT--QWQHIIEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T + LL+ +G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ A L ++G ++LD C+APGGKT H+LE+A + +++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVLAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LKP G L++ TCS+ EE+ +Q F +
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILDAVWPRLKPSGTLVYATCSVLPEENRDQIKTFLQRTP 394
Query: 296 DSI-----RLNSPGQLLPTVNKKQDYDGFFYS 322
D+ + PGQ + ++ DGFFY+
Sbjct: 395 DAALSETGTPDQPGQQ--NLPGGEEGDGFFYA 424
>gi|416899677|ref|ZP_11929083.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
STEC_7v]
gi|417117126|ref|ZP_11967987.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
1.2741]
gi|422801226|ref|ZP_16849722.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
M863]
gi|323966250|gb|EGB61685.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
M863]
gi|327250937|gb|EGE62630.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
STEC_7v]
gi|386139670|gb|EIG80825.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
1.2741]
Length = 429
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 197/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIIEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL ++G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHVLPGFEEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMAWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVLAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWSHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|417709370|ref|ZP_12358393.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
VA-6]
gi|332998302|gb|EGK17903.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
VA-6]
Length = 420
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 111/330 (33%), Positives = 194/330 (58%), Gaps = 30/330 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I + +++P
Sbjct: 108 LINGVLRQFQRRQEELLAE--FNTRDARYLHPSWLLKRLQKAYPE--QWQSIAEANNQRP 163
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LRIN+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 164 PMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 223
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 224 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 283
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 284 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 325
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 326 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 385
Query: 296 DSIRLNSPGQLLPTVNKK---QDYDGFFYS 322
D+ + P + ++ DGFFY+
Sbjct: 386 DAELCETGTPEQPGKQNQPGAEEGDGFFYA 415
>gi|378957743|ref|YP_005215230.1| sun protein [Salmonella enterica subsp. enterica serovar
Gallinarum/pullorum str. RKS5078]
gi|357208354|gb|AET56400.1| sun protein [Salmonella enterica subsp. enterica serovar
Gallinarum/pullorum str. RKS5078]
Length = 449
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 111/332 (33%), Positives = 194/332 (58%), Gaps = 34/332 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 137 LINGVLRQFQRQQETLLNE--FATSDARFLHPGWLVKRLQNAYPT--QWQHIIEANNQRP 192
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T + LL+ +G++ P A++L TP + +P F G+ ++QD
Sbjct: 193 PMWLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQD 252
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ A L ++G ++LD C+APGGKT H+LE+A + +++VD + RL+ + +NLKR
Sbjct: 253 ASAQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVLAVDIDEQRLSRVYDNLKR 312
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 313 LGMKATV------------------KQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRH 354
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LKP G L++ TCS+ EE+ +Q F +
Sbjct: 355 PDIKWLRRDRDIAELAQLQAEILDAVWPRLKPSGTLVYATCSVLPEENRDQIKTFLQRTP 414
Query: 296 DSI-----RLNSPGQLLPTVNKKQDYDGFFYS 322
D+ + PGQ + ++ DGFFY+
Sbjct: 415 DAALSETGTPDQPGQQ--NLPGGEEGDGFFYA 444
>gi|422784174|ref|ZP_16836957.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TW10509]
gi|323974759|gb|EGB69872.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TW10509]
Length = 456
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 197/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 144 LINGVLRQFQRQQEELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIIEANNQRP 199
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL ++G++ P A++L TP + +P F G+ ++QD
Sbjct: 200 PMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHVLPGFEEGWVTVQD 259
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 260 ASAQGCMAWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 319
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 320 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 361
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 362 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLIYATCSVLPEENSLQIKAFLQRTA 421
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 422 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 451
>gi|110807136|ref|YP_690656.1| 16S rRNA methyltransferase GidB [Shigella flexneri 5 str. 8401]
gi|424839521|ref|ZP_18264158.1| 16S rRNA methyltransferase B [Shigella flexneri 5a str. M90T]
gi|110616684|gb|ABF05351.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
gi|383468573|gb|EID63594.1| 16S rRNA methyltransferase B [Shigella flexneri 5a str. M90T]
Length = 436
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 111/330 (33%), Positives = 194/330 (58%), Gaps = 30/330 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I + +++P
Sbjct: 124 LINGVLRQFQRRQEELLAE--FNTRDARYLHPSWLLKRLQKAYPE--QWQSIAEANNQRP 179
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LRIN+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 180 PMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 239
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 240 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 299
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 300 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 341
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 342 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 401
Query: 296 DSIRLNSPGQLLPTVNKK---QDYDGFFYS 322
D+ + P + ++ DGFFY+
Sbjct: 402 DAELCETGTPEQPGKQNQPGAEEGDGFFYA 431
>gi|29655200|ref|NP_820892.1| ribosomal RNA small subunit methyltransferase B [Coxiella burnetii
RSA 493]
gi|161829958|ref|YP_001597731.1| ribosomal RNA small subunit methyltransferase B [Coxiella burnetii
RSA 331]
gi|1169714|sp|P45679.1|RSMB_COXBU RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|29542472|gb|AAO91406.1| 16S rRNA m(5)C 967 methyltransferase [Coxiella burnetii RSA 493]
gi|161761825|gb|ABX77467.1| ribosomal RNA small subunit methyltransferase B [Coxiella burnetii
RSA 331]
Length = 430
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 125/343 (36%), Positives = 192/343 (55%), Gaps = 39/343 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR F+ +K E+ I E + +P+W+I +K +P+ W++IL + +P
Sbjct: 108 LINKLLRRFIAEKDELLTFTEKTI-EGQYAHPLWFIQHIKKAWPD--HWESILIANNARP 164
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+TLR+N K + Y ++L + + + P AI+L P S+ ++P F G+C IQD
Sbjct: 165 PMTLRVNLTKISREIYLEMLDQKNISAKPLDFLPAAIQLEKPCSVHQLPGFNEGYCYIQD 224
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEI-ADIK-LISVDNNLSRLNMISENLK 176
AA Q AA LL + + VLDAC+APG KT H+LE+ +K L+++DNN RLN I EN+
Sbjct: 225 AAGQFAAYLLKLENNQTVLDACAAPGSKTSHILEVNPHLKTLVAIDNNKQRLNRIKENIT 284
Query: 177 RLNLKA---TLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVR 233
RL L+ +L+D+S+I+ ++ + FDRIL D PC+ +GV+R
Sbjct: 285 RLGLRQEHLQCLLADVSQID----------------QWSSGELFDRILLDAPCSATGVIR 328
Query: 234 RNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKN 293
R+PDI LR+ DI + + ++LN LW +LK GG LL+ TCS+ +E+E+ F
Sbjct: 329 RHPDIKLLRQPGDISQYHQKKLQLLNALWTVLKAGGFLLYSTCSVLPDENEKVIEEFLST 388
Query: 294 H----------KDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 326
H ++L Q LP + K DGF+YSL K
Sbjct: 389 HDKVELSPTNVHGGLQLKYGVQQLPGQDNK---DGFYYSLLFK 428
>gi|417719193|ref|ZP_12368082.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
K-227]
gi|333014516|gb|EGK33864.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
K-227]
Length = 454
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 111/330 (33%), Positives = 194/330 (58%), Gaps = 30/330 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I + +++P
Sbjct: 142 LINGVLRQFQRRQEELLAE--FNTRDARYLHPSWLLKRLQKAYPE--QWQSIAEANNQRP 197
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LRIN+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 198 PMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 257
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 258 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 317
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 318 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 359
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 360 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 419
Query: 296 DSIRLNSPGQLLPTVNKK---QDYDGFFYS 322
D+ + P + ++ DGFFY+
Sbjct: 420 DAELCETGTPEQPGKQNQPGAEEGDGFFYA 449
>gi|430759748|ref|YP_007215605.1| Ribosomal RNA small subunit methyltransferase B [Thioalkalivibrio
nitratireducens DSM 14787]
gi|430009372|gb|AGA32124.1| Ribosomal RNA small subunit methyltransferase B [Thioalkalivibrio
nitratireducens DSM 14787]
Length = 410
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 111/337 (32%), Positives = 185/337 (54%), Gaps = 30/337 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR LR++ E+ M P W + ++ +YP +W+ +L+ +
Sbjct: 91 LVNALLRRALRER-ELLGQAMQRTPALRHACPAWLVAGIRASYPE--RWEAVLEASTRAA 147
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTI--IGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+TLR+N + + + + L+++GL + P A+ L P+ + IP F +G S+QD
Sbjct: 148 PMTLRVNTARVSRAAMQERLERAGLAAQPHPLVPTALTLAEPVDVDAIPGFADGLLSVQD 207
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAAQ A LL + G +LDAC+APGGKT HLLE + I L ++D + +R+ + +NL+
Sbjct: 208 AAAQWAGLLLSPQPGERILDACAAPGGKTGHLLEASSGGIDLTALDVDGARMGRVRDNLR 267
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL +A L++ D++ ++ + FD IL D+PC+ +GV+RR+P
Sbjct: 268 RLGYRAQLVIGDLADPE----------------DWWDGRPFDAILLDVPCSATGVIRRHP 311
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI LRR DI L+ ++L W++L+PGG+LL+VTCSL +E+E + D
Sbjct: 312 DIKLLRRAADIPALAARQRELLAQAWRLLRPGGRLLYVTCSLLADENERVVGSWLAATPD 371
Query: 297 S--IRLNSPGQLLPTVNK-----KQDYDGFFYSLFQK 326
+ + L PG V + +D DGF+++L +
Sbjct: 372 AKPLPLAFPGGDDRPVGRAVALGAEDMDGFYFALLGR 408
>gi|340000948|ref|YP_004731832.1| sun protein [Salmonella bongori NCTC 12419]
gi|339514310|emb|CCC32073.1| sun protein [Salmonella bongori NCTC 12419]
Length = 429
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 115/333 (34%), Positives = 196/333 (58%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + E + +P W + +++ YP QW+ I+ +++P
Sbjct: 117 LINGVLRQFQRQQEGLLAE--FANSEGRFLHPSWLLKRLQKAYPT--QWEAIVGANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLE--TTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL+++G++ T P AI+L P ++ +P F G+ ++QD
Sbjct: 173 PMWLRVNRNHHSRDSWLALLEEAGMKGFTHPAYPDAIRLEFPAAVHSLPGFDQGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LL ++G ++LD C+APGGKT H+LE A + +++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCVALLAPQNGEHILDLCAAPGGKTTHILEAAPEAHVMAVDVDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPLQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LKPGG L++ TCS+ EE+ +Q F +
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATCSVLPEENSDQIHAFLQRTP 394
Query: 296 DSIRLNS-----PGQL-LPTVNKKQDYDGFFYS 322
+++ + PGQ LP ++ DGFFY+
Sbjct: 395 NAMLSQTGIPDQPGQQNLPGA---EEGDGFFYA 424
>gi|419926681|ref|ZP_14444429.1| 16S rRNA methyltransferase B [Escherichia coli 541-1]
gi|388408974|gb|EIL69301.1| 16S rRNA methyltransferase B [Escherichia coli 541-1]
Length = 429
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 113/333 (33%), Positives = 197/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWFAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|331649085|ref|ZP_08350171.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
M605]
gi|417663860|ref|ZP_12313440.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
AA86]
gi|330909333|gb|EGH37847.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
AA86]
gi|331041583|gb|EGI13727.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
M605]
Length = 429
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 113/333 (33%), Positives = 197/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQDELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + ++ LL ++G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHSRDTWLALLDEAGMKGFPHADYPDAVQLETPAPVHALPGFEEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVLAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWSHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|422333633|ref|ZP_16414642.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
4_1_47FAA]
gi|373245347|gb|EHP64818.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
4_1_47FAA]
Length = 454
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 197/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 142 LINGVLRQFQRQQEELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 197
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL ++G++ P A++L TP + +P F G+ ++QD
Sbjct: 198 PMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHVLPGFEEGWVTVQD 257
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 258 ASAQGCMAWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 317
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 318 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 359
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 360 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 419
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 420 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 449
>gi|398800925|ref|ZP_10560185.1| ribosomal RNA small subunit methyltransferase RsmB [Pantoea sp.
GM01]
gi|398093742|gb|EJL84117.1| ribosomal RNA small subunit methyltransferase RsmB [Pantoea sp.
GM01]
Length = 428
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 113/335 (33%), Positives = 193/335 (57%), Gaps = 31/335 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++N +LR+FLR++ E +++ + YW +P W + +++ +P QW++I++ +++P
Sbjct: 117 LLNGVLRQFLRQQ-EALLAEVDQGTQRYW-HPGWLLKRLQAAWPE--QWQHIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLET-TIIGPLAIKLHTPISISKIPKFFNGFCSIQDA 119
P+ LR+N++ + ++ LL+ + + P A++L +P +S +P F +G+ ++QD
Sbjct: 173 PMWLRVNRQHHSRDAWLALLQAADKQAFPGDAPDALRLDSPAPVSHLPGFEHGWVTVQDL 232
Query: 120 AAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKRL 178
+AQ A LL+ ++G +LD C+APGGKT H+LEIA K+++VD + RL + ENL+RL
Sbjct: 233 SAQRCALLLEPQNGESILDLCAAPGGKTTHILEIAPQAKVLAVDIDQQRLLRVHENLQRL 292
Query: 179 NLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDI 238
+++A + D + FDRIL D PC+ +GV+RR+PDI
Sbjct: 293 DMQAEVRQGD----------------GRTPAEWCGEMQFDRILLDAPCSATGVIRRHPDI 336
Query: 239 PWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSI 298
WLRR DI +L+ +IL +W LK GG +++ TCS+ EE+ +Q F H D++
Sbjct: 337 KWLRRDRDIAELAILQREILEAVWPHLKSGGTMIYATCSILPEENHQQISTFLAAHSDAV 396
Query: 299 RLNSPG------QLLPTVNKKQDYDGFFYSLFQKR 327
P Q+ PTV+ DGFFY+ K+
Sbjct: 397 AETLPQGQANGWQVFPTVDGG---DGFFYAKLMKK 428
>gi|293416707|ref|ZP_06659344.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
B185]
gi|417627052|ref|ZP_12277303.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
STEC_MHI813]
gi|291431283|gb|EFF04268.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
B185]
gi|345378762|gb|EGX10682.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
STEC_MHI813]
Length = 429
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 198/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLE--TTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LRIN+ + ++ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRINRTHHSRDNWLALLDEAGMKGFPHTDYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|423110642|ref|ZP_17098337.1| ribosomal RNA small subunit methyltransferase B [Klebsiella oxytoca
10-5243]
gi|376378706|gb|EHS91464.1| ribosomal RNA small subunit methyltransferase B [Klebsiella oxytoca
10-5243]
Length = 429
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 115/333 (34%), Positives = 196/333 (58%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ ++ + + +P W + +++ YP +W+ I+D +++P
Sbjct: 117 LINGVLRQFQRQQEELLSE--FSRSDIRFLHPGWLLKRLQKAYPA--RWEAIVDANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLE--TTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T S+ LL+++G+ T P A+++ TP+ + +P F G+ +IQD
Sbjct: 173 PMWLRVNRLHHTRDSWLALLEEAGMSGFTHSAYPDAVRMETPVPVHALPGFEEGWVTIQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE A + +++++D + RL+ + +NLKR
Sbjct: 233 ASAQGCVTFLAPKNGEHILDLCAAPGGKTTHILEAAPEAQVLAIDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R ++ + FDRIL D PC+ SGV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRHPSQWCGEQQFDRILLDAPCSASGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIAELAQLQSEILDAVWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PGQL-LPTVNKKQDYDGFFYS 322
D++ + PGQ LP ++ DGFFY+
Sbjct: 395 DAVLSETGTPEVPGQQNLPGA---EEGDGFFYA 424
>gi|331674796|ref|ZP_08375553.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TA280]
gi|432604113|ref|ZP_19840343.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE66]
gi|331067705|gb|EGI39103.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TA280]
gi|431137493|gb|ELE39338.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE66]
Length = 429
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 197/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRVNRTHHSRDSLLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMSWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLIYATCSVLPEENSLQIKSFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|432451520|ref|ZP_19693777.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE193]
gi|433035168|ref|ZP_20222866.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE112]
gi|430977949|gb|ELC94772.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE193]
gi|431547560|gb|ELI21857.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE112]
Length = 429
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 198/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLE--TTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LRIN+ + ++ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRINRTHHSRDNWLALLDEAGMKGFPHTDYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|415851176|ref|ZP_11527925.1| ribosomal RNA small subunit methyltransferase B [Shigella sonnei
53G]
gi|323164853|gb|EFZ50644.1| ribosomal RNA small subunit methyltransferase B [Shigella sonnei
53G]
Length = 454
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 113/333 (33%), Positives = 197/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F ++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 142 LINGVLRQFQHQQEELLAE--FNTSDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 197
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 198 PMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 257
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 258 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVHDNLKR 317
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 318 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 359
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 360 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 419
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 420 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 449
>gi|261342758|ref|ZP_05970616.1| ribosomal RNA small subunit methyltransferase B [Enterobacter
cancerogenus ATCC 35316]
gi|288314937|gb|EFC53875.1| ribosomal RNA small subunit methyltransferase B [Enterobacter
cancerogenus ATCC 35316]
Length = 428
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 117/331 (35%), Positives = 187/331 (56%), Gaps = 32/331 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + E + +P W +N++K YP QW+ I + +++P
Sbjct: 116 LINGVLRQFQRQQEELLAE--FAQTEKRFLHPDWLLNRLKKAYPT--QWQAIAEANNQRP 171
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTI--IGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + LL++SG+ I P A++L +P + +P F G+ ++QD
Sbjct: 172 PMWLRVNRTHHKRDEWLALLEESGMSGFIHEAYPDAVRLASPAPVHALPGFEEGWVTVQD 231
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L+ ++G +LD C+APGGKT H+LE+A +++VD + RL+ + +NLKR
Sbjct: 232 ASAQGCMTWLEPKNGEKILDLCAAPGGKTTHILEVAPQADVLAVDVDEQRLSRVYDNLKR 291
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L +KA + D + N FDRIL D PC+ +GV+RR+PD
Sbjct: 292 LGMKAQVKQGD----------------GRTPADWCGNTQFDRILLDAPCSATGVIRRHPD 335
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR DIK+L++ IL+ +W LK GG L++ TCS+ EE+ +Q F K D+
Sbjct: 336 IKWLRRDRDIKELAQLQSDILDAIWPHLKAGGTLVYATCSVLPEENSQQIAAFLKRTPDA 395
Query: 298 IRLNS-----PGQL-LPTVNKKQDYDGFFYS 322
++ PGQ LP ++ DGFFY+
Sbjct: 396 ALHDTGTPEQPGQQNLPGA---EEGDGFFYA 423
>gi|399543078|ref|YP_006556386.1| ribosomal RNA small subunit methyltransferase B [Marinobacter sp.
BSs20148]
gi|399158410|gb|AFP28973.1| Ribosomal RNA small subunit methyltransferase B [Marinobacter sp.
BSs20148]
Length = 432
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 108/337 (32%), Positives = 191/337 (56%), Gaps = 34/337 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++N +LR R+ + S +++P W I +++ +P+ W+ I+D + +
Sbjct: 116 LVNGVLRSAEREGAPAAANDT-----SRYSHPGWMIEKLRHNWPD--DWQAIVDANNTQA 168
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLET--TIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+TLR+N + + Y +LL +G++ T P I+L P+ + +P F G S+QD
Sbjct: 169 PMTLRVNALRFSRDEYLQLLLDAGIDASATRFAPHGIQLARPVPVDALPWFAEGAVSVQD 228
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQL +LD+ G +LDAC+APGGKTC +LE +++++D + RL + ENL
Sbjct: 229 EAAQLCTTVLDLAPGQRILDACAAPGGKTCAILESCPQAAEVVAIDESPQRLPRVQENLD 288
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL+L A+L+ +D + I+ +++ + FDRIL D+PC+ SGV+RR+P
Sbjct: 289 RLDLHASLLQADAAAID----------------QWWDGQPFDRILLDVPCSASGVIRRHP 332
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI LRR++D+ L++ +L +W++L+PGG+L++ TCS++ +E+ F K D
Sbjct: 333 DIKLLRRESDVVPLAQIQLDLLAAMWRILQPGGRLVYATCSVFPQENHRIVQRFCKQQTD 392
Query: 297 SIRLNSP---GQLLPTVNK----KQDYDGFFYSLFQK 326
+ + + G+ +P + +DGFFY++ +K
Sbjct: 393 AELMTTEALWGRTMPAGRQLLPLNDGHDGFFYAVLEK 429
>gi|423116640|ref|ZP_17104331.1| ribosomal RNA small subunit methyltransferase B [Klebsiella oxytoca
10-5245]
gi|376377608|gb|EHS90376.1| ribosomal RNA small subunit methyltransferase B [Klebsiella oxytoca
10-5245]
Length = 429
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 111/330 (33%), Positives = 195/330 (59%), Gaps = 30/330 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ ++ + + +P W + +++ YP +W+ I+D +++P
Sbjct: 117 LINGVLRQFQRQQEELLSE--FSRSDIRFLHPGWLLKRLQKAYPA--RWEAIVDANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLE--TTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T S+ LL+++G+ T P A+++ TP+ + +P F G+ ++QD
Sbjct: 173 PMWLRVNRLHHTRDSWLALLEEAGMSGFTHSAYPDAVRMETPVPVHALPGFEEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE A + +++++D + RL+ + +NLKR
Sbjct: 233 ASAQGCVTFLAPKNGEHILDLCAAPGGKTTHILEAAPEAQVLAIDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R ++ + FDRIL D PC+ SGV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRHPSQWCGEQQFDRILLDAPCSASGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI++L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIEELAQLQSEILDAVWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNSPGQLLP---TVNKKQDYDGFFYS 322
D++ + LP + ++ DGFFY+
Sbjct: 395 DAVLSETGTPELPGQQNLPGGEEGDGFFYA 424
>gi|262166812|ref|ZP_06034549.1| ribosomal RNA small subunit methyltransferase B [Vibrio mimicus
VM223]
gi|262026528|gb|EEY45196.1| ribosomal RNA small subunit methyltransferase B [Vibrio mimicus
VM223]
Length = 426
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 115/335 (34%), Positives = 190/335 (56%), Gaps = 30/335 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R + E ++ + + +P W + +K +YP QW+ I++ + K
Sbjct: 113 LINAVLRNYQRDQ-ERLDAQATSHDAGRYGHPGWLLKLLKESYPE--QWQQIVEANNSKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGL--ETTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + Y LL+++ L E A+ L +P ++++P F G+ S+QD
Sbjct: 170 PMWLRVNHQHHNRDEYQTLLEQADLASEPHSQAEDALCLASPCDVNQLPGFAEGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQLA L ++G +LD C+APGGKT H+LE D +++++D + +RL + ENL+R
Sbjct: 230 AAAQLALTYLTPKAGELILDCCAAPGGKTAHILEHTPDSQVVAIDCDETRLKRVQENLQR 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L A +I D +++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 290 LKLNAQVICGDARYPQ----------------DWWQGEQFDRILLDAPCSATGVIRRHPD 333
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR DI L++ +IL+ +W+ LKPGG L++ TCS+ +E+ Q F + ++
Sbjct: 334 IKWLRRAEDIPALAELQREILDAMWQQLKPGGTLVYATCSITPQENSLQVKAFLERTPNA 393
Query: 298 IRLNS----PG-QLLPTVNKKQDYDGFFYSLFQKR 327
+ S PG Q+LP ++ DGF+Y++ K+
Sbjct: 394 SLVGSDPAQPGRQILPG---EEAMDGFYYAVLSKQ 425
>gi|218550564|ref|YP_002384355.1| 16S rRNA methyltransferase B [Escherichia fergusonii ATCC 35469]
gi|422807222|ref|ZP_16855652.1| ribosomal RNA small subunit methyltransferase B [Escherichia
fergusonii B253]
gi|254766861|sp|B7LRQ5.1|RSMB_ESCF3 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|218358105|emb|CAQ90752.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia
fergusonii ATCC 35469]
gi|324111967|gb|EGC05946.1| ribosomal RNA small subunit methyltransferase B [Escherichia
fergusonii B253]
Length = 429
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 197/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIIEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL ++G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHVLPGFEEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMAWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGILIYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|385873667|gb|AFI92187.1| Ribosomal RNA small subunit methyltransferase B [Pectobacterium sp.
SCC3193]
Length = 429
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 112/333 (33%), Positives = 191/333 (57%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + + N ++ +P W + +++ YP+ W++++D +++P
Sbjct: 117 LINGVLRQFQRQQEELMQREATN--SPHYLHPSWLLARIEHAYPD--HWQSVVDANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLA--IKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T +Y LL + G+E A I+L +P ++ +P F G+ +IQD
Sbjct: 173 PMWLRVNRLHHTREAYLDLLAQEGIEAFAHPDYADAIRLASPCAVDLLPGFAQGWATIQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L+ + G +LD C+APGGKT H+LE A +++VD + +RL + ENL R
Sbjct: 233 ASAQGCVYWLEPQDGEQILDLCAAPGGKTTHILEAAPKSHVLAVDIDETRLGRVRENLLR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L + A + K+ + R+ + + + FDRIL D PC+ +GV+RR+
Sbjct: 293 LQMHAEV------------------KQGDGRYPSSWCEGRMFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI++L +I++ W LKPGG +++ TCS+ +E+ +Q F H
Sbjct: 335 PDIKWLRRDRDIEELVALQKEIIDATWPHLKPGGTMVYATCSILPQENAQQVTDFLSRHA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ +++ PG Q+LP + DGFFY+
Sbjct: 395 DATLVDTGTSEIPGIQMLPHADGG---DGFFYA 424
>gi|127514666|ref|YP_001095863.1| sun protein [Shewanella loihica PV-4]
gi|126639961|gb|ABO25604.1| sun protein [Shewanella loihica PV-4]
Length = 427
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 117/330 (35%), Positives = 180/330 (54%), Gaps = 30/330 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++N +LR R + + + +N P W I ++K YP+ W+ ++ H++P
Sbjct: 115 VVNGVLRNLQRNQKPLPEDN----ETLAFNTPAWLIKRLKAAYPD--SWQEMIAQSHQRP 168
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGP-LAIKLHTPISISKIPKFFNGFCSIQDA 119
P+ LR NQ T Y LL + + T AI L +P + +P F +G S+QD
Sbjct: 169 PMWLRNNQLSQTREQYLTLLDEQEIAATPGASNDAILLESPKDVGMLPGFADGVASVQDG 228
Query: 120 AAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKRL 178
AAQ AA LL + +LDAC+APGGK+CHLLE I L++VD + RL + +NL RL
Sbjct: 229 AAQWAASLLAPEANELILDACAAPGGKSCHLLESQPSIDLVAVDFDAKRLERVQQNLDRL 288
Query: 179 NLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDI 238
+LKA L+ D +KI+ +++ FDRIL D PC+ +GV+RR+PDI
Sbjct: 289 SLKAKLVHGDAAKID----------------SWWQGDKFDRILLDAPCSATGVIRRHPDI 332
Query: 239 PWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSI 298
WLR++ DI++L+ +IL++ W+ LKPGG LL+ TCS+ +E+ EQ F +D+
Sbjct: 333 KWLRKQADIEELATLQSQILDHCWQWLKPGGTLLYATCSILPQENAEQIAAFLARTQDAT 392
Query: 299 ------RLNSPGQLLPTVNKKQDYDGFFYS 322
+ NS + + DGF+Y+
Sbjct: 393 LIPIAQQQNSDDIGWQITPGQDNMDGFYYA 422
>gi|256823833|ref|YP_003147796.1| sun protein [Kangiella koreensis DSM 16069]
gi|256797372|gb|ACV28028.1| sun protein [Kangiella koreensis DSM 16069]
Length = 443
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 127/346 (36%), Positives = 194/346 (56%), Gaps = 49/346 (14%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++N +LR F+R++ E+ N ++ + P W I+ +K Y Q +++++ +++
Sbjct: 124 LVNGVLRNFVRQQPELLSQADSNW-DTRFAMPDWLISVLKPYYKG--QMESLMEAINQQA 180
Query: 61 PLTLRINQRKTTLISYNKLLKKSGL--ETTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+TLR+N+++ Y +LL + GL T I A+ L P+S+ ++P F +G+ S+QD
Sbjct: 181 PMTLRVNRQRIGRDQYLELLLEQGLPASTHPIATSALVLEHPVSVEQLPHFSDGYVSVQD 240
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKR 177
AAAQLAA +L VLDAC+APGGKTCHLLE+ D I L + D + R ISENL R
Sbjct: 241 AAAQLAAGILAPPPHSIVLDACAAPGGKTCHLLELCDSIALTACDVDHERCQRISENLLR 300
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L+L A L D++ N Y + +FD IL D PC+ +GV+RR+PD
Sbjct: 301 LDLSAKLDCQDLTDSN------------------YPDNHFDAILLDAPCSATGVIRRHPD 342
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I LR +DI +L + +IL +LW LK GG+LL+ TCS+ +E+E+Q F + HKD+
Sbjct: 343 IKLLRHASDIDQLVQLQQQILEHLWCKLKAGGRLLYATCSILPQENEQQITHFLERHKDA 402
Query: 298 --IRLNS---------------PGQLLPTVNKKQDYDGFFYSLFQK 326
+ L+ PGQL DGF+Y+L +K
Sbjct: 403 KLVSLSEQIQNLSHTKTGCQLIPGQL--------SMDGFYYALLEK 440
>gi|424817837|ref|ZP_18242988.1| 16S rRNA methyltransferase B [Escherichia fergusonii ECD227]
gi|325498857|gb|EGC96716.1| 16S rRNA methyltransferase B [Escherichia fergusonii ECD227]
Length = 429
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 197/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFHRQQEELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIIEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL ++G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHVLPGFEEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMAWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGILIYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|262172810|ref|ZP_06040488.1| ribosomal RNA small subunit methyltransferase B [Vibrio mimicus
MB-451]
gi|424810974|ref|ZP_18236308.1| sun protein [Vibrio mimicus SX-4]
gi|261893886|gb|EEY39872.1| ribosomal RNA small subunit methyltransferase B [Vibrio mimicus
MB-451]
gi|342321985|gb|EGU17781.1| sun protein [Vibrio mimicus SX-4]
Length = 426
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 115/335 (34%), Positives = 190/335 (56%), Gaps = 30/335 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R + E ++ + + +P W + +K +YP QW+ I++ + K
Sbjct: 113 LINAVLRNYQRDQ-ERLDAQATSHDAGRYGHPGWLLKLLKESYPE--QWQQIVEANNSKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGL--ETTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + Y LL+++ L E A+ L +P ++++P F G+ S+QD
Sbjct: 170 PMWLRVNHQHHNRDEYQTLLEQADLASEPHSQAEDALCLASPCDVNQLPGFAEGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQLA L ++G +LD C+APGGKT H+LE D +++++D + +RL + ENL+R
Sbjct: 230 AAAQLALTYLAPKAGELILDCCAAPGGKTAHILERTPDSQVVAIDCDETRLKRVQENLQR 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L A +I D +++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 290 LKLNAQVICGDARYPQ----------------DWWQGEQFDRILLDAPCSATGVIRRHPD 333
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR DI L++ +IL+ +W+ LKPGG L++ TCS+ +E+ Q F + ++
Sbjct: 334 IKWLRRAEDIPALAELQREILDAMWQQLKPGGTLVYATCSITPQENSLQVKAFLERTPNA 393
Query: 298 IRLNS----PG-QLLPTVNKKQDYDGFFYSLFQKR 327
+ S PG Q+LP ++ DGF+Y++ K+
Sbjct: 394 SLVGSDPAQPGRQILPG---EEAMDGFYYAVLSKQ 425
>gi|332289287|ref|YP_004420139.1| 16S rRNA methyltransferase B [Gallibacterium anatis UMN179]
gi|330432183|gb|AEC17242.1| 16S rRNA methyltransferase B [Gallibacterium anatis UMN179]
Length = 440
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 118/344 (34%), Positives = 187/344 (54%), Gaps = 40/344 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
++N ++R FLR++ I + + +W +P W +N +K YP W+ I++ ++
Sbjct: 121 LVNGVMRRFLREQASILA-----VIDKHWQTLHPEWLVNLLKSCYPQ--NWRQIVEENNQ 173
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLET-TIIGPLAIKLHTPISISKIPKFFNGFCSIQ 117
KPP+ LR+N + + Y +LL + + + + P A++L I++ ++P F G+ S+Q
Sbjct: 174 KPPMWLRVNHQHCSTEQYQQLLAQQHIASESAQPPSALRLQNAIAVEQLPNFEQGWVSVQ 233
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLI-SVDNNLSRLNMISENLK 176
D AQ AA LLD ++ +LDAC+APGGKT H+LE+A ++ ++D RL + +NL+
Sbjct: 234 DCHAQWAALLLDGQNNETILDACAAPGGKTTHILELAPQAVVTALDVEAGRLQRVEQNLQ 293
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RLN A +I D S+ + FDRIL D PC+ +GV+RR+P
Sbjct: 294 RLNQHANVICGDASQ---------------PQQWLQDGAMFDRILLDAPCSATGVIRRHP 338
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR+ +DI++L +IL LW+ LK G LL+ TCS+ +E+ EQ F H D
Sbjct: 339 DIKWLRQPSDIEQLVALQKQILQALWQRLKVNGVLLYATCSILPQENSEQIRSFLATHSD 398
Query: 297 ----SIRLNSPG-------QLLPTVNKKQDYDGFFYSLFQKRKE 329
++ L G Q P +Q DGFFY+ K+ E
Sbjct: 399 AKLIAVDLGEQGIDTGFGFQCFP---HQQGGDGFFYAKLVKQAE 439
>gi|170684100|ref|YP_001745551.1| 16S rRNA methyltransferase B [Escherichia coli SMS-3-5]
gi|224493251|sp|B1LGP5.1|RSMB_ECOSM RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|170521818|gb|ACB19996.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
SMS-3-5]
Length = 429
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 113/333 (33%), Positives = 197/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + + LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRVNRTHHSRDRWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|258622988|ref|ZP_05718003.1| sun protein [Vibrio mimicus VM573]
gi|258584771|gb|EEW09505.1| sun protein [Vibrio mimicus VM573]
Length = 438
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 115/335 (34%), Positives = 190/335 (56%), Gaps = 30/335 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R + E ++ + + +P W + +K +YP QW+ I++ + K
Sbjct: 125 LINAVLRNYQRDQ-ERLDAQATSHDAGRYGHPGWLLKLLKESYPE--QWQQIVEANNSKA 181
Query: 61 PLTLRINQRKTTLISYNKLLKKSGL--ETTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + Y LL+++ L E A+ L +P ++++P F G+ S+QD
Sbjct: 182 PMWLRVNHQHHNRDEYQTLLEQADLASEPHSQAEDALCLASPCDVNQLPGFAEGWVSVQD 241
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQLA L ++G +LD C+APGGKT H+LE D +++++D + +RL + ENL+R
Sbjct: 242 AAAQLALTYLAPKAGELILDCCAAPGGKTAHILERTPDSQVVAIDCDETRLKRVQENLQR 301
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L A +I D +++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 302 LKLNAQVICGDARYPQ----------------DWWQGEQFDRILLDAPCSATGVIRRHPD 345
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR DI L++ +IL+ +W+ LKPGG L++ TCS+ +E+ Q F + ++
Sbjct: 346 IKWLRRAEDIPALAELQREILDAMWQQLKPGGTLVYATCSITPQENSLQVKAFLERTPNA 405
Query: 298 IRLNS----PG-QLLPTVNKKQDYDGFFYSLFQKR 327
+ S PG Q+LP ++ DGF+Y++ K+
Sbjct: 406 SLVGSDPAQPGRQILPG---EEAMDGFYYAVLSKQ 437
>gi|449146180|ref|ZP_21776972.1| Ribosomal RNA small subunit methyltransferase B [Vibrio mimicus
CAIM 602]
gi|449078172|gb|EMB49114.1| Ribosomal RNA small subunit methyltransferase B [Vibrio mimicus
CAIM 602]
Length = 426
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 115/335 (34%), Positives = 191/335 (57%), Gaps = 30/335 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R + E ++ + + +P W + +K +YP QW+ I++ + K
Sbjct: 113 LINAVLRNYQRDQ-ERLDAQATSHDAGRYGHPGWLLKLLKESYPE--QWQQIVEANNSKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGL--ETTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + Y LL+++ L E A+ L +P ++++P F G+ S+QD
Sbjct: 170 PMWLRVNHQHHNRDEYKTLLEQADLASEPHSQAEDALCLASPCDVNQLPGFAEGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQLA L ++G +LD C+APGGKT H+LE + +++++D + +RL + ENL+R
Sbjct: 230 AAAQLALTYLAPKAGELILDCCAAPGGKTAHILERTPNSQVVAIDCDETRLKRVQENLQR 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
LNL A +I D +++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 290 LNLNAQVICGDARYPQ----------------DWWQGEQFDRILLDAPCSATGVIRRHPD 333
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR DI L++ +IL+ +W+ LKPGG L++ TCS+ +E+ Q F + ++
Sbjct: 334 IKWLRRAEDIPALAELQREILDAMWQQLKPGGTLVYATCSITPQENSLQVKAFLERTPNA 393
Query: 298 IRLNS----PG-QLLPTVNKKQDYDGFFYSLFQKR 327
+ S PG Q+LP ++ DGF+Y++ K+
Sbjct: 394 SLVGSDPAQPGRQILPG---EEAMDGFYYAVLSKQ 425
>gi|258626112|ref|ZP_05720963.1| sun protein [Vibrio mimicus VM603]
gi|258581638|gb|EEW06536.1| sun protein [Vibrio mimicus VM603]
Length = 438
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 115/335 (34%), Positives = 190/335 (56%), Gaps = 30/335 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R + E ++ + + +P W + +K +YP QW+ I++ + K
Sbjct: 125 LINAVLRNYQRDQ-ERLDAQATSHDAGRYGHPGWLLKLLKESYPE--QWQQIVEANNSKA 181
Query: 61 PLTLRINQRKTTLISYNKLLKKSGL--ETTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + Y LL+++ L E A+ L +P ++++P F G+ S+QD
Sbjct: 182 PMWLRVNHQHHNRDEYQTLLEQADLASEPHSQAEDALCLASPCDVNQLPGFAEGWVSVQD 241
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQLA L ++G +LD C+APGGKT H+LE D +++++D + +RL + ENL+R
Sbjct: 242 AAAQLALTYLAPKAGELILDCCAAPGGKTAHILERTPDSQVVAIDCDETRLKRVQENLQR 301
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L A +I D +++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 302 LKLNAQVICGDARYPQ----------------DWWQGEQFDRILLDAPCSATGVIRRHPD 345
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR DI L++ +IL+ +W+ LKPGG L++ TCS+ +E+ Q F + ++
Sbjct: 346 IKWLRRAEDIPALAELQREILDAMWQQLKPGGTLVYATCSITPQENSLQVKAFLERTPNA 405
Query: 298 IRLNS----PG-QLLPTVNKKQDYDGFFYSLFQKR 327
+ S PG Q+LP ++ DGF+Y++ K+
Sbjct: 406 SLVGSDPAQPGRQILPG---EEAMDGFYYAVLSKQ 437
>gi|242237890|ref|YP_002986071.1| 16S rRNA methyltransferase B [Dickeya dadantii Ech703]
gi|242129947|gb|ACS84249.1| sun protein [Dickeya dadantii Ech703]
Length = 431
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 118/332 (35%), Positives = 189/332 (56%), Gaps = 34/332 (10%)
Query: 1 MINAILREFLRKKGEIFK--SKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHK 58
+IN +LR+F R++ E+ + K +H +P W + ++K YP W++I+D ++
Sbjct: 117 LINGVLRQFQRQQEELVQKMQKTSALHA----HPEWLLTRLKKAYPET--WQDIIDANNQ 170
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSI 116
PP+ LR+N++ Y LL++ G+ + AIKL TP ++ +P F G+ ++
Sbjct: 171 HPPMWLRVNRQHNERDGYIALLQEQGIPASKHPDYQDAIKLDTPSPVTSLPGFEQGWITV 230
Query: 117 QDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENL 175
QDA+AQ A LD ++ +LD C+APGGKT H+LEIA ++++VD + RL + ENL
Sbjct: 231 QDASAQGCAYWLDPQNNEDILDLCAAPGGKTTHILEIAPKARVLAVDVDEHRLARVKENL 290
Query: 176 KRLNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVR 233
+RL A + ++ + R + + FDRIL D PC+ +GV+R
Sbjct: 291 QRLRQHADV------------------RQGDGRVPEEWCGDSQFDRILLDAPCSATGVIR 332
Query: 234 RNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKN 293
R+PDI WLRR +DI +L+ +IL+ +W LK GG L++ TCS+ EE+++Q I F +
Sbjct: 333 RHPDIKWLRRDSDIVELANLQREILDAIWPRLKIGGTLVYATCSILPEENQQQIISFLQR 392
Query: 294 HKDSIRLNSPGQLLPTVNK---KQDYDGFFYS 322
H D++ + P V K QD DGFFY+
Sbjct: 393 HADAVLRETGSPEKPGVQKLPSPQDGDGFFYA 424
>gi|422973942|ref|ZP_16976039.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TA124]
gi|371596153|gb|EHN84993.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TA124]
Length = 429
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 113/333 (33%), Positives = 197/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGK H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKITHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|383188350|ref|YP_005198478.1| ribosomal RNA small subunit methyltransferase RsmB [Rahnella
aquatilis CIP 78.65 = ATCC 33071]
gi|371586608|gb|AEX50338.1| ribosomal RNA small subunit methyltransferase RsmB [Rahnella
aquatilis CIP 78.65 = ATCC 33071]
Length = 429
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 193/332 (58%), Gaps = 34/332 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + + N +S +P W N++K YP+ W+NI+D +++P
Sbjct: 117 LINGVLRQFQRQQEELLQRMLNN--DSRHLHPSWLFNRLKKAYPD--DWENIVDANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL---AIKLHTPISISKIPKFFNGFCSIQ 117
P+ LR+N+ T Y LL +S +E + P AI+L TP +S +P F G+ ++Q
Sbjct: 173 PMWLRVNRLHHTRDEYLHLLNESQIEA-VPHPEYGDAIRLITPCQVSLLPGFTEGWITVQ 231
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
DA+AQ + LLD ++G +LD C APGGKT H+LE A +++VD + RL + ENL+
Sbjct: 232 DASAQGSVDLLDPQNGELILDLCCAPGGKTTHILEAAPKAHVLAVDVDEQRLKRVHENLQ 291
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A + D + + + ++ FDRIL D PC+ +GV+RR+P
Sbjct: 292 RLKLNAEVKQGDGREPQV----------------WAGDRIFDRILLDAPCSATGVIRRHP 335
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLRR +DI +L+ +IL+ +W LK G +++ TCS+ +E+ +Q F ++H+D
Sbjct: 336 DIKWLRRDSDIAELASLQKEILHAVWPRLKSKGVMVYATCSILPDENCQQIASFLESHQD 395
Query: 297 SI-----RLNSPG-QLLPTVNKKQDYDGFFYS 322
+ + PG Q LP +D DGF+Y+
Sbjct: 396 ATLVETGTMEKPGRQNLP---HAEDGDGFYYA 424
>gi|425070314|ref|ZP_18473428.1| ribosomal RNA small subunit methyltransferase B [Proteus mirabilis
WGLW6]
gi|404595446|gb|EKA95990.1| ribosomal RNA small subunit methyltransferase B [Proteus mirabilis
WGLW6]
Length = 422
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 119/332 (35%), Positives = 194/332 (58%), Gaps = 31/332 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ ++ + N ++S + +P W + ++K YP W++I++ ++KP
Sbjct: 117 LINGVLRQFQRQQ-DVLMERFQN-NDSRYLHPSWLLTRIKNAYPEL--WESIIEGNNQKP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLE--TTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+NQ + Y LL+K G+ + P AI+L TP ++ +P F G+ ++QD
Sbjct: 173 PMWLRVNQIHHSREQYLALLEKEGISAFSDDHHPNAIRLETPCNVHLLPGFNEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
+AQ A LL ++ +LD C+APGGKT H+LEIA ++++D + RL + ENL R
Sbjct: 233 RSAQRCAELLAPQNNEQILDLCAAPGGKTTHILEIAPKAHVLAIDIDEQRLARVKENLNR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L L AT+ K + R+ ++ N FDRIL D PC+ +GV+RR+
Sbjct: 293 LKLHATV------------------KSGDGRYPEQWCANMQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ +Q F + +
Sbjct: 335 PDIKWLRRNEDIAQLAQIQKEILHAIWPYLKSGGTLVYATCSILPEENSQQIAAFLSSMQ 394
Query: 296 DSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 327
D+ + + Q LP ++ DGFFY+L K+
Sbjct: 395 DA-QCDYQHQCLP---EQYSGDGFFYALINKK 422
>gi|197287099|ref|YP_002152971.1| 16S rRNA methyltransferase B [Proteus mirabilis HI4320]
gi|425070626|ref|ZP_18473732.1| ribosomal RNA small subunit methyltransferase B [Proteus mirabilis
WGLW4]
gi|224493257|sp|B4F1L5.1|RSMB_PROMH RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|194684586|emb|CAR46442.1| ribosomal RNA small subunit methyltransferase B [Proteus mirabilis
HI4320]
gi|404600148|gb|EKB00596.1| ribosomal RNA small subunit methyltransferase B [Proteus mirabilis
WGLW4]
Length = 422
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 119/332 (35%), Positives = 194/332 (58%), Gaps = 31/332 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ ++ + N ++S + +P W + ++K YP W++I++ ++KP
Sbjct: 117 LINGVLRQFQRQQ-DVLMERFQN-NDSRYLHPSWLLTRIKNAYPEL--WESIIEGNNQKP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLE--TTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+NQ + Y LL+K G+ + P AI+L TP ++ +P F G+ ++QD
Sbjct: 173 PMWLRVNQIHHSREQYLALLEKEGISAFSDDHHPNAIRLETPCNVHLLPGFNEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
+AQ A LL ++ +LD C+APGGKT H+LEIA ++++D + RL + ENL R
Sbjct: 233 RSAQRCAELLAPQNNEQILDLCAAPGGKTTHILEIAPKAHVLAIDIDEQRLARVKENLNR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L L AT+ K + R+ ++ N FDRIL D PC+ +GV+RR+
Sbjct: 293 LKLHATV------------------KSGDGRYPEQWCANMQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ +Q F + +
Sbjct: 335 PDIKWLRRNEDIAQLAQIQKEILHAIWPYLKSGGTLVYATCSILPEENSQQIAAFLSSMQ 394
Query: 296 DSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 327
D+ + + Q LP ++ DGFFY+L K+
Sbjct: 395 DA-QCDYQHQCLP---EQYSGDGFFYALINKK 422
>gi|417625368|ref|ZP_12275659.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
STEC_H.1.8]
gi|345373432|gb|EGX05391.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
STEC_H.1.8]
Length = 429
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 113/333 (33%), Positives = 197/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PD WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDSKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|218666805|ref|YP_002424535.1| sun protein [Acidithiobacillus ferrooxidans ATCC 23270]
gi|415985297|ref|ZP_11559559.1| 16S rRNA methyltransferase B [Acidithiobacillus sp. GGI-221]
gi|218519018|gb|ACK79604.1| sun protein [Acidithiobacillus ferrooxidans ATCC 23270]
gi|339834718|gb|EGQ62460.1| 16S rRNA methyltransferase B [Acidithiobacillus sp. GGI-221]
Length = 434
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 113/330 (34%), Positives = 181/330 (54%), Gaps = 29/330 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR +LR++ E+ + + + +P W +++ YP W I + P
Sbjct: 126 LMNAVLRRYLRER-EVLDTALVD---RDLGHPAWLAARLRAAYPQ--DWPAIAAANNSAP 179
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISI--SKIPKFFNGFCSIQD 118
PL LR+N ++ +Y +LL + G E + A L P S+ + +P + G+ ++QD
Sbjct: 180 PLWLRVNTQRVDPGAYRRLLAEQGREAEGVTWSAAALCLPASVPVATLPGWDAGWVAVQD 239
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRL 178
AAQLAA +L R G +LDAC+APGGKT HL + +L ++D + RLN + E L+R
Sbjct: 240 GAAQLAAHILAPREGERILDACAAPGGKTAHLWALGATRLDALDRSAERLNRVRETLERQ 299
Query: 179 NLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDI 238
+ L +D ++ ++ + +D IL D PCTG+GV+RR+PDI
Sbjct: 300 GGEVHLQAADAAETAT----------------WWNGETYDAILLDAPCTGTGVIRRHPDI 343
Query: 239 PWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSI 298
R+ D+ + ++L LW L+PGG+LL+ TCS+ EE+EEQ F + H D+
Sbjct: 344 RLRRQPEDVAEAVAQQARLLEGLWPCLRPGGRLLYATCSVLPEENEEQIAAFVQRHSDAR 403
Query: 299 RLNSP--GQLLPTVNKKQDYDGFFYSLFQK 326
R+ P GQ LP ++D DGF+Y+L +K
Sbjct: 404 RMAHPLTGQRLP---GQEDMDGFYYALLEK 430
>gi|157148863|ref|YP_001456182.1| 16S rRNA methyltransferase B [Citrobacter koseri ATCC BAA-895]
gi|224493244|sp|A8AQI3.1|RSMB_CITK8 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|157086068|gb|ABV15746.1| hypothetical protein CKO_04701 [Citrobacter koseri ATCC BAA-895]
Length = 428
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 110/330 (33%), Positives = 191/330 (57%), Gaps = 30/330 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + E+ + +P W + +++ +YP QW+ I++ +++P
Sbjct: 116 LINGVLRQFQRQQEALLAE--FATSEARFLHPSWLLKRLQKSYPT--QWEAIVEANNQRP 171
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLE--TTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL+ +G+ P A++L +P + +P F G+ ++QD
Sbjct: 172 PMWLRVNRTHHSRDSWLTLLQDAGMNGFPHSAYPDALRLESPAPVHALPGFEEGWVTVQD 231
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G +LD C+APGGKT H+LE A + ++++VD + RL+ + +NLKR
Sbjct: 232 ASAQGCVSFLAPQNGEKILDLCAAPGGKTTHILEAAPEAQVLAVDVDEQRLSRVYDNLKR 291
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 292 LGMKATV------------------KQGDGRYPAQWCGEQKFDRILLDAPCSATGVIRRH 333
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L+K +IL+ +W LK GG L++ TCS+ EE+ +Q + F +
Sbjct: 334 PDIKWLRRDRDIAELAKLQSEILDAIWPHLKSGGTLVYATCSVLPEENSQQILAFLQRTP 393
Query: 296 DSIRLNSPGQLLPTVNK---KQDYDGFFYS 322
D+ + P V ++ DGFFY+
Sbjct: 394 DATLTGTGTPAQPGVQNLPGAEEGDGFFYA 423
>gi|110643527|ref|YP_671257.1| 16S rRNA methyltransferase GidB [Escherichia coli 536]
gi|123343554|sp|Q0TCH3.1|RSMB_ECOL5 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|110345119|gb|ABG71356.1| SUN protein [Escherichia coli 536]
Length = 429
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 113/333 (33%), Positives = 196/333 (58%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQDELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL ++G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVQLETPAPVHALPGFEEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+ PGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAGPGGKTTHILEVAPEAQVLAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWSHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|54295430|ref|YP_127845.1| hypothetical protein lpl2516 [Legionella pneumophila str. Lens]
gi|53755262|emb|CAH16756.1| hypothetical protein lpl2516 [Legionella pneumophila str. Lens]
Length = 427
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 121/340 (35%), Positives = 183/340 (53%), Gaps = 36/340 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR F R++ I + K+ + P W + +++ +PN W+ I + + P
Sbjct: 107 LVNAVLRNFCRRQDHILE-KLAAEPVFIYGQPNWLLQRLQKNWPN--DWQFIAEANDRHP 163
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLET--TIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+TLR+N K ++ Y LLKKSG+E + P I L P + +P F G S+QD
Sbjct: 164 PMTLRVNVLKHSVDEYLDLLKKSGIEAFKHPVAPDGITLAIPCDVMTLPGFAQGSVSVQD 223
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AA QLAA LL ++ G VLDAC APGGKTCH+LE +++D + RL + +NL
Sbjct: 224 AAPQLAAYLLSLKPGQRVLDACCAPGGKTCHILEKESGLASCVALDLDPQRLQRVRDNLN 283
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL+L+AT++ D+ + ++ FDRIL D PC+ +GV+RR+
Sbjct: 284 RLDLQATVVEGDVLEPR----------------SWWDGHPFDRILLDAPCSATGVIRRHS 327
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI LR +I +S+ +LN+LW +L PGG +++ TCS+ +E+E Q F H D
Sbjct: 328 DIKLLRTDEEISAISQVQSSMLNSLWPLLAPGGLMVYATCSIMSDENELQIARFVAEHSD 387
Query: 297 SI---------RLNSPG-QLLPTVNKKQDYDGFFYSLFQK 326
R G Q+LP + DGFFYS+ +K
Sbjct: 388 CQVSDGKWSWGRWTGHGQQILPG---EHGMDGFFYSVLRK 424
>gi|416293274|ref|ZP_11650385.1| Ribosomal RNA small subunit methyltransferase B [Shigella flexneri
CDC 796-83]
gi|420327470|ref|ZP_14829215.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
CCH060]
gi|320187010|gb|EFW61722.1| Ribosomal RNA small subunit methyltransferase B [Shigella flexneri
CDC 796-83]
gi|391248232|gb|EIQ07476.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
CCH060]
Length = 429
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 113/333 (33%), Positives = 197/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAK--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+R +
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRHH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|420349248|ref|ZP_14850628.1| ribosomal RNA small subunit methyltransferase B [Shigella boydii
965-58]
gi|391266855|gb|EIQ25801.1| ribosomal RNA small subunit methyltransferase B [Shigella boydii
965-58]
Length = 429
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 111/330 (33%), Positives = 194/330 (58%), Gaps = 30/330 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRRQEELLAE--FNTSDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LRIN+ + + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRINRTQHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G +LD C+APGGKT H+LE+A + ++++VD + RL+ + NLKR
Sbjct: 233 ASAQGCMTWLAPQNGERILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYANLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNSPGQLLPTVNKK---QDYDGFFYS 322
D+ + P + ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNQPGAEEGDGFFYA 424
>gi|269140542|ref|YP_003297243.1| 16S rRNA methyltransferase B [Edwardsiella tarda EIB202]
gi|387869014|ref|YP_005700483.1| Ribosomal RNA small subunit methyltransferase B [Edwardsiella tarda
FL6-60]
gi|267986203|gb|ACY86032.1| 16S rRNA methyltransferase B [Edwardsiella tarda EIB202]
gi|304560327|gb|ADM42991.1| Ribosomal RNA small subunit methyltransferase B [Edwardsiella tarda
FL6-60]
Length = 430
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 112/308 (36%), Positives = 179/308 (58%), Gaps = 32/308 (10%)
Query: 25 HESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPPLTLRINQRKTTLISYNKLLKKSG 84
H S+W +P W + +++ YP QW++I D +++PP+ LR+N+ T +Y LL ++G
Sbjct: 140 HASHWLHPSWLLKRLQQAYPE--QWQSIADANNQRPPMWLRVNRCHHTRDAYLALLLQAG 197
Query: 85 LETTI--IGPLAIKLHTPISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSA 142
++ P A++L P +S++P F G+ ++QDA+AQ + LLD + G +LD C A
Sbjct: 198 IDAVPHETFPDALRLQDPQPVSRLPGFEQGWVTVQDASAQHSVDLLDPQDGEQILDLCCA 257
Query: 143 PGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDI 201
PGGKT H+LE A +++VD + SRL + ENL+RL A + D
Sbjct: 258 PGGKTTHILEAAPKAHVLAVDVDESRLKRVRENLQRLQQHAEIRCGD------------- 304
Query: 202 NKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNL 261
+T + + + + FDRIL D PC+ +GV+RR+PDI WLRR +DI +L+ +I++ +
Sbjct: 305 -GRTPDEW--ARGRQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELAALQREIIDAV 361
Query: 262 WKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPG-------QLLPTVNKKQ 314
W LK GG +++ TCS+ +E++EQ + F H D+ RL+ G Q LP +
Sbjct: 362 WPFLKSGGVMVYATCSILPQENQEQILAFLSRHPDA-RLSDTGDIQRPGLQFLPRPDAG- 419
Query: 315 DYDGFFYS 322
DGFFY+
Sbjct: 420 --DGFFYA 425
>gi|345869608|ref|ZP_08821565.1| sun protein [Thiorhodococcus drewsii AZ1]
gi|343922991|gb|EGV33688.1| sun protein [Thiorhodococcus drewsii AZ1]
Length = 455
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 112/340 (32%), Positives = 187/340 (55%), Gaps = 36/340 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR F R++ E ++ + + W +P W + +++ +P+ W+ I++ + +
Sbjct: 135 LVNALLRRFQRER-EALEASVDCDRDLQWLFPAWLLKRLRADWPD--DWQQIVEASNDRA 191
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTII--GPLAIKLHTPISISKIPKFFNGFCSIQD 118
P++LR+N+ Y + L + + +T I + L+ P ++P+F G+ S+QD
Sbjct: 192 PMSLRVNRMHLDPQQYAERLAAADIGSTPIPGSEAGLMLNRPRPTRELPEFDRGWVSVQD 251
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA--DIKLISVDNNLSRLNMISENLK 176
A AQLAA LLD + G VLDAC+APGGKT +LE ++L ++D + +RL + L
Sbjct: 252 AGAQLAAQLLDAQPGQRVLDACAAPGGKTAAILERVGNQVELTAIDQDPTRLASVQTLLT 311
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A + + D S + + + +DRIL D+PC+ +GV+RR+P
Sbjct: 312 RLGLTAEVAVGDASDPSGD----------------WAERRYDRILLDVPCSATGVIRRHP 355
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLRR++DI+ L + +IL+ +W +L PGG+LL+ TCSL +E++ Q F +
Sbjct: 356 DIKWLRRESDIETLRETQRRILDAIWPLLAPGGRLLYATCSLLPQENQSQIAAFLSRQPE 415
Query: 297 SIR----------LNSPGQLLPTVNKKQDYDGFFYSLFQK 326
+ L QLLPT DGF+Y+L +K
Sbjct: 416 AREIALETERGRALQHGRQLLPTAGGS---DGFYYALIEK 452
>gi|432865344|ref|ZP_20088441.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE146]
gi|431402090|gb|ELG85403.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE146]
Length = 429
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 113/333 (33%), Positives = 197/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + ++ LL ++G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHSRDNWLALLDEAGMKGFPHADYPDAVRLETPAPVHVLPGFEEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMAWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>gi|198282170|ref|YP_002218491.1| sun protein [Acidithiobacillus ferrooxidans ATCC 53993]
gi|198246691|gb|ACH82284.1| sun protein [Acidithiobacillus ferrooxidans ATCC 53993]
Length = 431
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 113/330 (34%), Positives = 181/330 (54%), Gaps = 29/330 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR +LR++ E+ + + + +P W +++ YP W I + P
Sbjct: 123 LMNAVLRRYLRER-EVLDTALVD---RDLGHPAWLAARLRAAYPQ--DWPAIAAANNSAP 176
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISI--SKIPKFFNGFCSIQD 118
PL LR+N ++ +Y +LL + G E + A L P S+ + +P + G+ ++QD
Sbjct: 177 PLWLRVNTQRVDPGAYRRLLAEQGREAEGVTWSAAALCLPASVPVATLPGWDAGWVAVQD 236
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRL 178
AAQLAA +L R G +LDAC+APGGKT HL + +L ++D + RLN + E L+R
Sbjct: 237 GAAQLAAHILAPREGERILDACAAPGGKTAHLWALGATRLDALDRSAERLNRVRETLERQ 296
Query: 179 NLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDI 238
+ L +D ++ ++ + +D IL D PCTG+GV+RR+PDI
Sbjct: 297 GGEVHLQAADAAETAT----------------WWNGETYDAILLDAPCTGTGVIRRHPDI 340
Query: 239 PWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSI 298
R+ D+ + ++L LW L+PGG+LL+ TCS+ EE+EEQ F + H D+
Sbjct: 341 RLRRQPEDVAEAVAQQARLLEGLWPCLRPGGRLLYATCSVLPEENEEQIAAFVQRHSDAR 400
Query: 299 RLNSP--GQLLPTVNKKQDYDGFFYSLFQK 326
R+ P GQ LP ++D DGF+Y+L +K
Sbjct: 401 RMAHPLTGQRLP---GQEDMDGFYYALLEK 427
>gi|88811382|ref|ZP_01126637.1| Fmu, rRNA SAM-dependent methyltransferase [Nitrococcus mobilis
Nb-231]
gi|88791271|gb|EAR22383.1| Fmu, rRNA SAM-dependent methyltransferase [Nitrococcus mobilis
Nb-231]
Length = 423
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 113/338 (33%), Positives = 189/338 (55%), Gaps = 36/338 (10%)
Query: 2 INAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
+NA+LR F R++ ++ + + P W + ++ +P+ W++++ + + P
Sbjct: 108 VNAVLRRFQRERANRLQAVDLDCATRH-AMPPWLLQWLRADWPS--DWQSLVQASNARAP 164
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQDA 119
LT+RIN+R+ ++ L L + P AI L + ++++P F +G S+QDA
Sbjct: 165 LTVRINRRRRDRDAWLAQLSAVSLTGAHLTELPQAIMLSRALPVTELPGFADGEVSVQDA 224
Query: 120 AAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLN 179
AAQ AA LL +R VLDAC+APGGKT H+LE A++ L ++D + RL ++ENL RL
Sbjct: 225 AAQFAAMLLALRPKQRVLDACAAPGGKTTHILEQAEVTLTALDIDAQRLTRVAENLARLG 284
Query: 180 LKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIP 239
L+A L++ D + + ++ FDRIL D PC+G+GV+RR+PDI
Sbjct: 285 LQANLLVGDAT----------------DPASWWDGLTFDRILVDAPCSGTGVIRRHPDIK 328
Query: 240 WLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIR 299
WLRR +D+ L+ ++LN LW +L GG+L++ TCS+ E++ F + H D++
Sbjct: 329 WLRRPSDLPALAATQQRLLNRLWPLLSSGGRLIYATCSVLRAENDAVIESFLRGHGDAL- 387
Query: 300 LNSPG-----------QLLPTVNKKQDYDGFFYSLFQK 326
+ +P Q+LP ++D DGF+Y+ +K
Sbjct: 388 VRAPDIPLGRALQFGHQILP---GERDMDGFYYACLEK 422
>gi|262402050|ref|ZP_06078614.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. RC586]
gi|262351696|gb|EEZ00828.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. RC586]
Length = 426
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 114/335 (34%), Positives = 192/335 (57%), Gaps = 30/335 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R++ E ++ + + +P W + +K +YP QW+ I++ + K
Sbjct: 113 LINAVLRNYQREQ-ERLDAQATSHDAGRYGHPSWLLKLLKESYPE--QWQQIVEANNSKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGL--ETTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + + Y LL+++ + E A+ L P ++++P F G+ S+QD
Sbjct: 170 PMWLRVNHQHHSRDEYQALLEQAEIASEPHSQAEDALCLVNPCDVNQLPGFAEGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQLA L ++G +LD C+APGGKT H+LE D +++++D + +RL + ENL+R
Sbjct: 230 AAAQLALTYLAPKAGELILDCCAAPGGKTAHILERTPDSQVVAIDCDETRLKRVQENLQR 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L A +I D +++++ FDRIL D PC+ +GV+RR+PD
Sbjct: 290 LKLNAQVICGDARYPQ----------------DWWQDEQFDRILLDAPCSATGVIRRHPD 333
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR DI L++ +IL+ +W+ LKPGG L++ TCS+ +E+ Q F + ++
Sbjct: 334 IKWLRRAEDIPALAELQREILDAMWQQLKPGGTLVYATCSITPQENCLQVKAFLERTPEA 393
Query: 298 IRLNS----PG-QLLPTVNKKQDYDGFFYSLFQKR 327
+ S PG Q+LP ++ DGF+Y++ K+
Sbjct: 394 SLVGSDPAQPGRQILPG---EEAMDGFYYAVLSKQ 425
>gi|197334196|ref|YP_002157328.1| ribosomal RNA small subunit methyltransferase B [Vibrio fischeri
MJ11]
gi|197315686|gb|ACH65133.1| ribosomal RNA small subunit methyltransferase B [Vibrio fischeri
MJ11]
Length = 451
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 117/335 (34%), Positives = 188/335 (56%), Gaps = 31/335 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R + E+ +K + + +P W + ++ YP QW+ I++ + K
Sbjct: 138 LINAVLRNYQRSQEEL-DAKSVSHDSGKYGHPGWLLKMLQQAYPE--QWETIVEANNSKA 194
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + T Y LL+K + T A+ L + +P F G+ S+QD
Sbjct: 195 PMWLRVNSQHHTRDEYIALLEKEEISVTPHSQATDALLLDKARDVYTLPGFEQGWVSVQD 254
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQL+A L ++G +LD C+APGGKT H+LE D ++++D + +RL + ENL+R
Sbjct: 255 AAAQLSAEYLQPQNGELILDCCAAPGGKTAHILERTQDTNVVAIDCDETRLKRVYENLER 314
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
LNLKA +I D + ++K + FDRIL D PC+ +GV+RR+PD
Sbjct: 315 LNLKAQVICGD----------------ARHPEEWWKGEQFDRILLDAPCSATGVIRRHPD 358
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR DIK L++ +I + +W LK GG +++ TCS+ E+ +Q F D+
Sbjct: 359 IKWLRRAEDIKALAELQSEIFDAMWLQLKSGGTMVYATCSITPLENCDQVKAFLARTSDA 418
Query: 298 IRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQK 326
+++ PG Q+LP +++ DGF+Y++ QK
Sbjct: 419 TLIDNTDPEKPGRQILPG---EENMDGFYYAVLQK 450
>gi|52842799|ref|YP_096598.1| rRNA methyltransferase (SUN protein) [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|378778488|ref|YP_005186927.1| rRNA methyltransferase (SUN protein) [Legionella pneumophila subsp.
pneumophila ATCC 43290]
gi|52629910|gb|AAU28651.1| rRNA methyltransferase (SUN protein) [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|364509304|gb|AEW52828.1| rRNA methyltransferase (SUN protein) [Legionella pneumophila subsp.
pneumophila ATCC 43290]
Length = 427
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 122/340 (35%), Positives = 182/340 (53%), Gaps = 36/340 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR F R+K I + K+ + P W + +++ +PN W+ I + P
Sbjct: 107 LVNAVLRNFCRRKDHILE-KLAAEPVFIYGQPNWLLQRLQKDWPN--DWQFIAAANDRHP 163
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLET--TIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+TLR+N K ++ Y LLKKSG+E + P I L P + +P F G S+QD
Sbjct: 164 PMTLRVNVLKHSVDEYLDLLKKSGIEAFKHPVAPDGITLAIPCDVMTLPGFAQGSVSVQD 223
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AA QLAA LL ++ G VLDAC APGGKTCH+LE +++D + RL + +NL
Sbjct: 224 AAPQLAAYLLSLKPGQRVLDACCAPGGKTCHILEKEPGLASCVALDLDPQRLQRVRDNLN 283
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL+L+AT++ D+ + ++ FDRIL D PC+ +GV+RR+
Sbjct: 284 RLDLQATVVQGDVLEPR----------------SWWDGHPFDRILLDAPCSATGVIRRHS 327
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI LR +I +S+ +LN+LW +L PGG +++ TCS+ +E+E Q F H D
Sbjct: 328 DIKLLRTDEEISAISQVQSSMLNSLWPLLAPGGLMVYATCSIMSDENELQIAQFVAEHSD 387
Query: 297 SI---------RLNSPG-QLLPTVNKKQDYDGFFYSLFQK 326
R G Q+LP + DGFFYS+ +K
Sbjct: 388 CQVSDGKWSWGRWTGHGQQILPG---EHSMDGFFYSVLRK 424
>gi|322515643|ref|ZP_08068621.1| RNA methyltransferase Sun [Actinobacillus ureae ATCC 25976]
gi|322118294|gb|EFX90577.1| RNA methyltransferase Sun [Actinobacillus ureae ATCC 25976]
Length = 435
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 121/338 (35%), Positives = 189/338 (55%), Gaps = 42/338 (12%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
+ N +LR FLR++ +I + + +W +P W++N++K YP+ W+ I++ ++
Sbjct: 118 LTNGVLRRFLREQAQILA-----VVDKHWQTLHPDWFVNRIKKVYPH---WREIVEANNQ 169
Query: 59 KPPLTLRINQRKTTLISYNKLL-----KKSGLETTIIGPLAIKLHTPISISKIPKFFNGF 113
+PP+ +R NQ+ Y LL K S T + AI L P+ ++K+ F G+
Sbjct: 170 RPPMWIRANQQHIKAQDYAVLLGELVAKNSENSTACVPDCAILLENPVPVAKLMHFEKGW 229
Query: 114 CSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMIS 172
++QD AQ +A LL ++G +LDAC+APGGKT H+LE A ++I++D +RL +
Sbjct: 230 ATVQDVHAQWSAELLGAKNGELILDACAAPGGKTTHILEKALQAQVIALDIEENRLKRVR 289
Query: 173 ENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVV 232
ENL RL A +I D SK + L D+ FDRIL D PC+ +GV+
Sbjct: 290 ENLTRLGQAAKVICGDASKPQ-EWLEPDV--------------MFDRILLDAPCSATGVI 334
Query: 233 RRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSK 292
RR+PDI WLR++ DI L++ KIL+ LW+ LKP G LL+ TCS+ EE+E+Q F
Sbjct: 335 RRHPDIKWLRKEQDIAGLAELQSKILHALWQRLKPNGVLLYATCSILPEENEQQINRFVA 394
Query: 293 NHKDS--IRLNSPG------QLLPTVNKKQDYDGFFYS 322
D+ + ++ G Q P +++ DGFFY+
Sbjct: 395 QQTDAKLVEMDFNGKKTAMKQFFP---QEKGGDGFFYA 429
>gi|381403015|ref|ZP_09927699.1| 16S rRNA methyltransferase B [Pantoea sp. Sc1]
gi|380736214|gb|EIB97277.1| 16S rRNA methyltransferase B [Pantoea sp. Sc1]
Length = 433
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 113/331 (34%), Positives = 194/331 (58%), Gaps = 32/331 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++N +LR+F R++ E + + + + Y +P W + +++ +P QW++I++ + +P
Sbjct: 117 LLNGVLRQFQRQR-ETLLASIQDGPQRYL-HPGWLLKRLQHAWPE--QWEHIVEANNLRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N++ + ++ +L +SG P A++L P +S++P F G+ ++QD
Sbjct: 173 PMWLRVNRQHHSRDAWLTMLTESGRNAQPAADVPDALRLDVPALVSQLPGFDQGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
+AQ A LL+ ++G +LD C+APGGKT H+LEIA D +++VD + RL + ENL+R
Sbjct: 233 LSAQRCALLLEPQNGEQILDLCAAPGGKTTHILEIAPDADVLAVDVDAQRLKRVDENLQR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KA + K+ + R ++ ++ FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKAEV------------------KQGDGRTPQQWCGDRQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L+K +IL+ +W LKPGG L++ TCS+ EE+ +Q F +
Sbjct: 335 PDIKWLRRDRDIAELAKLQREILDAIWPHLKPGGTLIYATCSILPEENHQQIEAFLQRQH 394
Query: 296 DS----IRLNSPGQLLPTVNKKQDYDGFFYS 322
D+ +R ++P L + DGFFY+
Sbjct: 395 DAQAEPLR-DAPASGLQVFPDAEGGDGFFYA 424
>gi|89074758|ref|ZP_01161216.1| Putative Sun protein [Photobacterium sp. SKA34]
gi|89049522|gb|EAR55083.1| Putative Sun protein [Photobacterium sp. SKA34]
Length = 426
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 113/334 (33%), Positives = 189/334 (56%), Gaps = 30/334 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INAILR + R++ E ++ + + +P W + +K +YP Q+ +I + + K
Sbjct: 113 LINAILRNYQRQQ-ETLDAQAISHDAGKYGHPSWLLKLLKESYPE--QFADICEANNTKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTI--IGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N++ T +Y LL + T + A++L +P ++++P F +G+ S+QD
Sbjct: 170 PMWLRVNRQHNTRDAYRALLDAEDIATELHPQAADALRLVSPCDVTQLPGFSDGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQLA L ++ +LD C+APGGKT H++E + K++++D + +RL + ENL R
Sbjct: 230 AAAQLAVDYLQPKADELILDCCAAPGGKTAHIMEHVPSTKVVAIDCDENRLKRVHENLAR 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
LNL AT++ +D ++++ FDRIL D PC+ +GV+RR+PD
Sbjct: 290 LNLDATVLCADARYPE----------------QWWQGDKFDRILLDAPCSATGVIRRHPD 333
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR DI L+ +I + +W LKPGG L++ TCS+ +E+ +Q F +
Sbjct: 334 IKWLRRGEDIAALATLQAEIFDAMWLQLKPGGTLVYATCSITPQENCDQVKAFLARTPNV 393
Query: 298 IRLNS----PG-QLLPTVNKKQDYDGFFYSLFQK 326
+ S PG Q+LP ++ DGF+Y++ K
Sbjct: 394 TLIGSDPAKPGRQILP---GEESMDGFYYAVLTK 424
>gi|350560490|ref|ZP_08929330.1| sun protein [Thioalkalivibrio thiocyanoxidans ARh 4]
gi|349782758|gb|EGZ37041.1| sun protein [Thioalkalivibrio thiocyanoxidans ARh 4]
Length = 439
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 111/337 (32%), Positives = 184/337 (54%), Gaps = 30/337 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR LR++ + ++ M + P W + ++ ++P W+ +L+ +
Sbjct: 120 LVNALLRRALREREPLLQA-MQRTPALRYACPAWLVAGIRASHPE--HWEAMLEASTRAA 176
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTI--IGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+TLR+N + + + + L + GL + P A+ L P+ + IP F +G S+QD
Sbjct: 177 PMTLRVNTARVSRAAMQEQLHREGLAVHPHPLVPTALTLADPMDVDAIPGFADGLLSVQD 236
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAAQ A LL + G +LDAC+APGGKT HLLE + I L ++D + R+ + +NL+
Sbjct: 237 AAAQWAGLLLSPQPGERILDACAAPGGKTGHLLEASSGQIDLTALDVDGERMGRVRDNLQ 296
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL +A +++ D++ ++ + FD IL D+PC+ SGV+RR+P
Sbjct: 297 RLEYRARMVIGDLADPQA----------------WWDGRPFDAILLDVPCSASGVIRRHP 340
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI LRR DI L+ ++L W++L+PGG+LL+VTCSL EE+E + D
Sbjct: 341 DIKLLRRAADIPALATRQRELLAQAWELLRPGGRLLYVTCSLLAEENERVVGPWLAATPD 400
Query: 297 S--IRLNSPGQLLPTVNKK-----QDYDGFFYSLFQK 326
+ + L PG + V + +D DGF+Y+L +
Sbjct: 401 AQPLPLAFPGGVERAVGRAVVLGTEDMDGFYYALLGR 437
>gi|117918492|ref|YP_867684.1| sun protein [Shewanella sp. ANA-3]
gi|117610824|gb|ABK46278.1| sun protein [Shewanella sp. ANA-3]
Length = 429
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 111/303 (36%), Positives = 179/303 (59%), Gaps = 28/303 (9%)
Query: 29 WNYPIWWINQVKITYPNFFQWKNILDVGHKKPPLTLRINQRKTTLISYNKLLKKSGLETT 88
+N P W I ++K YP+ W+ I+ H++PP+ LR N+ + +Y L + +E +
Sbjct: 139 YNTPGWLIKRLKAAYPD--NWQEIIQQSHERPPMWLRNNRLSQSRDAYLAALSELEIEAS 196
Query: 89 I-IGPLAIKLHTPISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKT 147
+ AI L P ++ +P+F G S+QD AAQ AA LL ++ VLDAC+APGGK+
Sbjct: 197 AGLSDDAILLAHPKDVATLPRFHEGAASVQDGAAQWAATLLAPQANELVLDACAAPGGKS 256
Query: 148 CHLLEIA-DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTN 206
CHLLE+ I+L++VD + RL + +NL RL+LKA +I D + I+
Sbjct: 257 CHLLELEPSIQLVAVDFDAKRLERVQQNLDRLSLKAEVIHGDAANID------------- 303
Query: 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLK 266
+++ + FDRIL D PC+ +GV+RR+PDI WLR+ +DI++L++ +IL++ WK LK
Sbjct: 304 ---SWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRKNHDIEELAELQRQILDHCWKWLK 360
Query: 267 PGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVN-------KKQDYDGF 319
PGG LL+ TCS+ +E+ +Q F D+ +L++ Q + + + + DGF
Sbjct: 361 PGGTLLYATCSILPQENRDQISAFLARTADA-KLDTLAQQASSQDIGWQITPGQHNMDGF 419
Query: 320 FYS 322
+Y+
Sbjct: 420 YYA 422
>gi|253991652|ref|YP_003043008.1| ribosomal RNA small subunit methyltransferase B [Photorhabdus
asymbiotica]
gi|253783102|emb|CAQ86267.1| ribosomal RNA small subunit methyltransferase B [Photorhabdus
asymbiotica]
Length = 429
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 183/315 (58%), Gaps = 36/315 (11%)
Query: 25 HESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPPLTLRINQRKTTLISYNKLLKKSG 84
H SY +P W +++ YP +W+ +++V ++KPP+ LR+N+ + Y LL K+G
Sbjct: 139 HSSYHLHPEWLSTRIQKAYPQ--EWQQLINVNNQKPPMWLRVNRIYHSRDEYLTLLHKAG 196
Query: 85 L--ETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSA 142
+ E I P AI++ +P ++ +P F G+ ++QD +AQ A LL +G +LD C+A
Sbjct: 197 IDAEPAIELPFAIRVISPCPVAILPGFDKGWVTVQDVSAQGCAELLQPINGEKILDLCAA 256
Query: 143 PGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDI 201
PGGKT HLLEIA + ++++VD + RL + ENL+RLN AT+ + D
Sbjct: 257 PGGKTTHLLEIAPESQVLAVDIDGQRLKRVEENLRRLNCHATVKIGD------------- 303
Query: 202 NKKTNNRFRFY--KNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILN 259
R+ Y +N+ FDRIL D PC+ +GV+RR+PDI WLRR+ DI +L + +I++
Sbjct: 304 -----GRYPEYWAENQQFDRILLDAPCSATGVIRRHPDIKWLRREEDIAQLVQLQSEIID 358
Query: 260 NLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPG-------QLLPTVNK 312
+W LK GG L++ TCS+ +E+ +Q F K H D+ L+ P Q++P +
Sbjct: 359 AIWPYLKKGGTLVYATCSILPDENSQQINAFLKRHPDA-ELSGPDTREAPGKQIIPELTG 417
Query: 313 KQDYDGFFYSLFQKR 327
DGFFY+ KR
Sbjct: 418 G---DGFFYARLIKR 429
>gi|374261803|ref|ZP_09620381.1| rRNA methyltransferase (SUN protein) [Legionella drancourtii
LLAP12]
gi|363537897|gb|EHL31313.1| rRNA methyltransferase (SUN protein) [Legionella drancourtii
LLAP12]
Length = 391
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 118/338 (34%), Positives = 183/338 (54%), Gaps = 30/338 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR F R+K E+ +K+ + P W + ++K +PN W+ I P
Sbjct: 73 LVNAVLRNFCRQKEELL-AKLSQDPLFVYGQPQWLLKRLKTDWPN--DWQAIAQANDAHP 129
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTI--IGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+TLR+N RK ++ Y + L ++G+E + P I L +P + ++P F G S+QD
Sbjct: 130 PMTLRVNIRKNSVADYLQALNQAGVEAHAHPVAPDGITLVSPCDVRQLPGFAEGCISVQD 189
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAAQLA LL ++ G+ +LDAC APGGKTCH+LE +++D + RL + ENL
Sbjct: 190 AAAQLAVSLLALKPGLRLLDACCAPGGKTCHILETEPNLSACVALDVDPKRLIRVQENLT 249
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RLNL+ATL+ D S ++ + FDRIL D PC+ +GV+RR+
Sbjct: 250 RLNLQATLLQGDASTPT----------------TWWDGQLFDRILLDAPCSATGVIRRHS 293
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI LR ++I ++K ILN+LW +L G +++ TCS+ E+E+Q F + D
Sbjct: 294 DIKLLRTNDEIVTVTKIQHTILNSLWPLLAKDGLMVYATCSVISAENEQQIARFVAENPD 353
Query: 297 SIRLN-------SPGQLLPTVNKKQDYDGFFYSLFQKR 327
L+ + G + Q DGFFY++ K+
Sbjct: 354 CKVLSGNWPWGCATGHGQQILPGDQGMDGFFYTVLLKQ 391
>gi|397163316|ref|ZP_10486781.1| ribosomal RNA small subunit methyltransferase B [Enterobacter
radicincitans DSM 16656]
gi|396095463|gb|EJI93008.1| ribosomal RNA small subunit methyltransferase B [Enterobacter
radicincitans DSM 16656]
Length = 429
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 115/333 (34%), Positives = 193/333 (57%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + ++ + +P W + +V+ YP QW+ +++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FASSDNRYLFPAWLLKRVQKAYPQ--QWQQVIEASNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLE--TTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N++ T ++ LL++ GL+ T P A++L ++ +P F G+ ++QD
Sbjct: 173 PMWLRVNRQHHTRDAWLALLEEHGLQGLTHADYPDAVRLVAAAPVTALPGFAEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G +LD C+APGGKT H+LE A + +++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCVYFLAPQNGERILDLCAAPGGKTTHILEAAPEASVLAVDVDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KA + K+ + RF ++ ++ FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKAQV------------------KQGDGRFPSQWCGDEVFDRILVDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L +IL+ +W LK GG L++ TCS+ EE+ +Q F K
Sbjct: 335 PDIKWLRRDRDIPELVHLQSEILDAIWPHLKSGGTLVYATCSILPEENSQQVAAFLKRTP 394
Query: 296 DS-IRLNS----PG-QLLPTVNKKQDYDGFFYS 322
D+ + L PG Q LP ++ DGFFY+
Sbjct: 395 DAQLSLTGTPEQPGLQKLPGA---EEGDGFFYA 424
>gi|87121018|ref|ZP_01076910.1| Fmu, rRNA SAM-dependent methyltransferase [Marinomonas sp. MED121]
gi|86163856|gb|EAQ65129.1| Fmu, rRNA SAM-dependent methyltransferase [Marinomonas sp. MED121]
Length = 412
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 125/338 (36%), Positives = 189/338 (55%), Gaps = 34/338 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NAILR +LR+ +I K+ + + +P W + + + N F+ +I++ + +P
Sbjct: 93 LVNAILRRYLREADDI-KAILKAMPSVAHAHPKWLLKRFNKHWANEFE--HIVEANNARP 149
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + + + + L + G+E AI L +S+ +P FF+G S+QD
Sbjct: 150 PMCLRVNLSRVSRETQMEKLSQLGIENEKGEFSESAIYLKNAVSVQSLPGFFDGDMSVQD 209
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRL 178
AAQL+A +L + G VLDAC+APGGKT HLLE ADI L +V+ RL I ENL+RL
Sbjct: 210 EAAQLSASILAPKEGDKVLDACAAPGGKTGHLLESADIHLTAVELESWRLAKIEENLERL 269
Query: 179 NLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDI 238
A LI +D ++ ++ FD+IL D+PC+ +GV+RRNPDI
Sbjct: 270 EFNAELICADSGDLD----------------AWWDKTPFDKILLDVPCSATGVIRRNPDI 313
Query: 239 PWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSI 298
R+ DI +L + +++NN+W LKPGGKLL+ TCS+ EE+E Q F +D+
Sbjct: 314 KINRKPADIVELVEIQKQLVNNIWLALKPGGKLLYATCSVMPEENEHQMAEFLSTTEDAK 373
Query: 299 RLN---------SPG-QLLPTVNKKQDYDGFFYSLFQK 326
+N S G QLLP K +DGF+Y L +K
Sbjct: 374 EINLTVPWGKKVSHGIQLLPN---KNSHDGFYYCLIEK 408
>gi|419198994|ref|ZP_13742288.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC8A]
gi|378044151|gb|EHW06572.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC8A]
Length = 420
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 113/333 (33%), Positives = 197/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 108 LINGVLRQFQRQQEELLAG--FYASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 163
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 164 PMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 223
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 224 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 283
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 284 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 325
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 326 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 385
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 386 DAELCETGTPEQPGKQNLPGT---EEGDGFFYA 415
>gi|260857409|ref|YP_003231300.1| 16S rRNA methyltransferase GidB [Escherichia coli O26:H11 str.
11368]
gi|260870031|ref|YP_003236433.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli
O111:H- str. 11128]
gi|415787653|ref|ZP_11494200.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EPECa14]
gi|415820327|ref|ZP_11509516.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
OK1180]
gi|417197418|ref|ZP_12016352.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
4.0522]
gi|417211135|ref|ZP_12021552.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
JB1-95]
gi|417296896|ref|ZP_12084143.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
900105 (10e)]
gi|417593691|ref|ZP_12244380.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
2534-86]
gi|419205403|ref|ZP_13748566.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC8B]
gi|419211749|ref|ZP_13754816.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC8C]
gi|419217689|ref|ZP_13760683.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC8D]
gi|419223438|ref|ZP_13766350.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC8E]
gi|419228911|ref|ZP_13771752.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC9A]
gi|419234501|ref|ZP_13777269.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC9B]
gi|419241063|ref|ZP_13783753.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC9C]
gi|419245357|ref|ZP_13787990.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC9D]
gi|419251218|ref|ZP_13793786.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC9E]
gi|419256910|ref|ZP_13799410.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC10A]
gi|419263893|ref|ZP_13806295.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC10B]
gi|419269219|ref|ZP_13811562.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC10C]
gi|419275369|ref|ZP_13817652.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC10D]
gi|419286206|ref|ZP_13828369.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC10F]
gi|419878378|ref|ZP_14399850.1| 16S rRNA methyltransferase B [Escherichia coli O111:H11 str.
CVM9534]
gi|419879808|ref|ZP_14401232.1| 16S rRNA methyltransferase B [Escherichia coli O111:H11 str.
CVM9545]
gi|419891905|ref|ZP_14411945.1| 16S rRNA methyltransferase B [Escherichia coli O111:H8 str.
CVM9570]
gi|419897527|ref|ZP_14417111.1| 16S rRNA methyltransferase B [Escherichia coli O111:H8 str.
CVM9574]
gi|419904396|ref|ZP_14423396.1| 16S rRNA methyltransferase B [Escherichia coli O26:H11 str.
CVM9942]
gi|419906935|ref|ZP_14425792.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli
O26:H11 str. CVM10026]
gi|420090406|ref|ZP_14602175.1| 16S rRNA methyltransferase B [Escherichia coli O111:H8 str.
CVM9602]
gi|420096500|ref|ZP_14607869.1| 16S rRNA methyltransferase B [Escherichia coli O111:H8 str.
CVM9634]
gi|420104543|ref|ZP_14615234.1| 16S rRNA methyltransferase B [Escherichia coli O111:H11 str.
CVM9455]
gi|420111238|ref|ZP_14621082.1| 16S rRNA methyltransferase B [Escherichia coli O111:H11 str.
CVM9553]
gi|420117570|ref|ZP_14626926.1| hypothetical protein ECO10021_28887 [Escherichia coli O26:H11 str.
CVM10021]
gi|420123471|ref|ZP_14632361.1| 16S rRNA methyltransferase B [Escherichia coli O26:H11 str.
CVM10030]
gi|420126553|ref|ZP_14635288.1| 16S rRNA methyltransferase B [Escherichia coli O26:H11 str.
CVM10224]
gi|420135673|ref|ZP_14643753.1| 16S rRNA methyltransferase B [Escherichia coli O26:H11 str.
CVM9952]
gi|424748552|ref|ZP_18176692.1| 16S rRNA methyltransferase B [Escherichia coli O26:H11 str.
CFSAN001629]
gi|424766951|ref|ZP_18194288.1| 16S rRNA methyltransferase B [Escherichia coli O111:H11 str.
CFSAN001630]
gi|424769953|ref|ZP_18197169.1| 16S rRNA methyltransferase B [Escherichia coli O111:H8 str.
CFSAN001632]
gi|425381568|ref|ZP_18765565.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1865]
gi|257756058|dbj|BAI27560.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli
O26:H11 str. 11368]
gi|257766387|dbj|BAI37882.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli
O111:H- str. 11128]
gi|323154126|gb|EFZ40329.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EPECa14]
gi|323179175|gb|EFZ64749.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
OK1180]
gi|345333278|gb|EGW65729.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
2534-86]
gi|378044857|gb|EHW07267.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC8B]
gi|378049982|gb|EHW12316.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC8C]
gi|378058536|gb|EHW20744.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC8D]
gi|378061879|gb|EHW24058.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC8E]
gi|378069749|gb|EHW31834.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC9A]
gi|378074636|gb|EHW36670.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC9B]
gi|378076280|gb|EHW38288.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC9C]
gi|378087342|gb|EHW49202.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC9D]
gi|378091044|gb|EHW52878.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC9E]
gi|378097468|gb|EHW59220.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC10A]
gi|378101112|gb|EHW62801.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC10B]
gi|378107608|gb|EHW69227.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC10C]
gi|378112470|gb|EHW74049.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC10D]
gi|378126836|gb|EHW88229.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC10F]
gi|386188723|gb|EIH77512.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
4.0522]
gi|386195739|gb|EIH89974.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
JB1-95]
gi|386260340|gb|EIJ15814.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
900105 (10e)]
gi|388335446|gb|EIL02011.1| 16S rRNA methyltransferase B [Escherichia coli O111:H11 str.
CVM9534]
gi|388348761|gb|EIL14332.1| 16S rRNA methyltransferase B [Escherichia coli O111:H8 str.
CVM9570]
gi|388355171|gb|EIL20030.1| 16S rRNA methyltransferase B [Escherichia coli O111:H8 str.
CVM9574]
gi|388367677|gb|EIL31343.1| 16S rRNA methyltransferase B [Escherichia coli O26:H11 str.
CVM9942]
gi|388370641|gb|EIL34158.1| 16S rRNA methyltransferase B [Escherichia coli O111:H11 str.
CVM9545]
gi|388377855|gb|EIL40635.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli
O26:H11 str. CVM10026]
gi|394385815|gb|EJE63331.1| 16S rRNA methyltransferase B [Escherichia coli O111:H8 str.
CVM9602]
gi|394388311|gb|EJE65593.1| 16S rRNA methyltransferase B [Escherichia coli O111:H8 str.
CVM9634]
gi|394392136|gb|EJE68931.1| 16S rRNA methyltransferase B [Escherichia coli O26:H11 str.
CVM10224]
gi|394398834|gb|EJE74971.1| 16S rRNA methyltransferase B [Escherichia coli O111:H11 str.
CVM9553]
gi|394401963|gb|EJE77727.1| hypothetical protein ECO10021_28887 [Escherichia coli O26:H11 str.
CVM10021]
gi|394403981|gb|EJE79469.1| 16S rRNA methyltransferase B [Escherichia coli O111:H11 str.
CVM9455]
gi|394417011|gb|EJE90769.1| 16S rRNA methyltransferase B [Escherichia coli O26:H11 str.
CVM10030]
gi|394419731|gb|EJE93313.1| 16S rRNA methyltransferase B [Escherichia coli O26:H11 str.
CVM9952]
gi|408294310|gb|EKJ12710.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1865]
gi|421933188|gb|EKT90981.1| 16S rRNA methyltransferase B [Escherichia coli O111:H11 str.
CFSAN001630]
gi|421943106|gb|EKU00398.1| 16S rRNA methyltransferase B [Escherichia coli O111:H8 str.
CFSAN001632]
gi|421944159|gb|EKU01420.1| 16S rRNA methyltransferase B [Escherichia coli O26:H11 str.
CFSAN001629]
Length = 429
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 113/333 (33%), Positives = 197/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAG--FYASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGT---EEGDGFFYA 424
>gi|54298582|ref|YP_124951.1| hypothetical protein lpp2646 [Legionella pneumophila str. Paris]
gi|53752367|emb|CAH13799.1| hypothetical protein lpp2646 [Legionella pneumophila str. Paris]
Length = 427
Score = 207 bits (526), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 121/340 (35%), Positives = 183/340 (53%), Gaps = 36/340 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR F R++ I + K+ + P W + +++ +PN W+ I + + P
Sbjct: 107 LVNAVLRNFCRRQDHILE-KLAAEPVFIYGQPNWLLQRLQKDWPN--DWQFIAEANDRHP 163
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLET--TIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+TLR+N K ++ Y LLKKSG+E + P I L P + +P F G S+QD
Sbjct: 164 PMTLRVNVLKHSVDEYLDLLKKSGIEAFKHPVAPDGITLAIPCDVMTLPGFAQGSVSVQD 223
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AA QLAA LL ++ G VLDAC APGGKTCH+LE +++D + RL + +NL
Sbjct: 224 AAPQLAAYLLSLKPGQRVLDACCAPGGKTCHILEKESGLASCVALDLDPQRLQRVRDNLN 283
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL+L+AT++ D+ + ++ FDRIL D PC+ +GV+RR+
Sbjct: 284 RLDLQATVVEGDVLEPR----------------SWWDGHPFDRILLDAPCSATGVIRRHS 327
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI LR +I +S+ +LN+LW +L PGG +++ TCS+ +E+E Q F H D
Sbjct: 328 DIKLLRTDEEISAISQVQSSMLNSLWPLLAPGGLMVYATCSIMSDENELQISRFVAEHPD 387
Query: 297 SI---------RLNSPG-QLLPTVNKKQDYDGFFYSLFQK 326
R G Q+LP + DGFFYS+ +K
Sbjct: 388 CQVSDGKWSWGRWTGHGQQILPG---EHGMDGFFYSVLRK 424
>gi|381150291|ref|ZP_09862160.1| ribosomal RNA small subunit methyltransferase RsmB
[Methylomicrobium album BG8]
gi|380882263|gb|EIC28140.1| ribosomal RNA small subunit methyltransferase RsmB
[Methylomicrobium album BG8]
Length = 428
Score = 207 bits (526), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 118/340 (34%), Positives = 184/340 (54%), Gaps = 36/340 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR +LR++ K+ N S ++P W I +++ +P+ + L ++ P
Sbjct: 110 LINALLRRYLREREPFEKAADENASASC-SHPEWLIAKIRQDWPD--EADRCLRENNQPP 166
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P LR+N + + +Y +LL GL + G A+ L P+ + ++P F G S+QD
Sbjct: 167 PFALRVNLARISREAYRELLNAQGLAAELPGFCASALILDQPVPVERLPGFAEGLVSVQD 226
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADI--KLISVDNNLSRLNMISENLK 176
AAQLAA LLD++ G VLD C+APGGKT H+LE+ +++++D + +RL + +NL+
Sbjct: 227 TAAQLAAGLLDVQPGQRVLDLCAAPGGKTAHILEMQPQLKEMVAIDVDANRLRRVEDNLR 286
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L+A + D S ++ + FDRIL D PC+ GV+RR+P
Sbjct: 287 RLRLEAKTVAGDASHPE----------------DWWDGRQFDRILVDAPCSALGVIRRHP 330
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI LRR DI+ L+ IL+ W +L PGG LL+ TCS+ EE+E + + F H D
Sbjct: 331 DIKLLRRAGDIEPLAALQRAILDAAWSLLAPGGCLLYATCSVLKEENERRIVDFLAGHPD 390
Query: 297 SIR---------LNSPG-QLLPTVNKKQDYDGFFYSLFQK 326
+I + G Q+LP DGF+Y+ +K
Sbjct: 391 AIEWPITAEWGAARAAGRQILPG---DLAMDGFYYARLRK 427
>gi|365102969|ref|ZP_09333075.1| ribosomal RNA small subunit methyltransferase B [Citrobacter
freundii 4_7_47CFAA]
gi|363645820|gb|EHL85075.1| ribosomal RNA small subunit methyltransferase B [Citrobacter
freundii 4_7_47CFAA]
Length = 429
Score = 207 bits (526), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 117/333 (35%), Positives = 188/333 (56%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + + + +P W + ++K YP +W+ IL+ +++P
Sbjct: 117 LINGVLRQFQRRQDELLAE--FAQSDLRFLHPSWLVKRIKSAYPQ--KWEAILEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T ++ LL ++GL P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRNHHTRDAWLDLLTEAGLTGFPHPDYPDAVRLETPAPVHALPGFNEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L G +LD C APGGKT H+LE+A +++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCVNYLLPEDGEQILDLCCAPGGKTTHILEVAPQANVMAVDVDEKRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPKQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +ILN W LK GG L++ TCS+ EE+++Q F
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILNATWSHLKSGGTLVYATCSILPEENQQQIAAFLARTP 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D++ + PG Q LP +D DGFFY+
Sbjct: 395 DAVLSETGTPEKPGRQNLPGA---EDGDGFFYA 424
>gi|121999099|ref|YP_001003886.1| sun protein [Halorhodospira halophila SL1]
gi|121590504|gb|ABM63084.1| 16S rRNA m(5)C-967 methyltransferase [Halorhodospira halophila SL1]
Length = 429
Score = 207 bits (526), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 111/341 (32%), Positives = 179/341 (52%), Gaps = 44/341 (12%)
Query: 1 MINAILREFLRK--KGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHK 58
M+NA+LR+ + G ++ Y + P W ++ ++ +P W + + G+
Sbjct: 115 MVNAVLRKLHKATPPGPADEAARYAL-------PPWLLDHLRRAWPE--DWPAVAEAGNA 165
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLETTI--IGPLAIKLHTPISISKIPKFFNGFCSI 116
PP+TLR ++ + + + + L + + + P A LH P+ ++++P F G+ S+
Sbjct: 166 HPPMTLRFDRNRISREACLQSLAEQEIPAHPGEVAPSAATLHAPVPVARLPGFAEGWLSV 225
Query: 117 QDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENL 175
QD AAQLAAPLLD + G VLDAC+APGGKT HLLE + ++D + RL + +NL
Sbjct: 226 QDEAAQLAAPLLDPQPGDRVLDACAAPGGKTLHLLEHTPTAAVTALDRSSRRLRQVRDNL 285
Query: 176 KRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRN 235
R +A + +D + ++ + F RIL D PCTGSGV+RR+
Sbjct: 286 ARGGYEAQCLAADAADPEA----------------WWDGEPFQRILLDAPCTGSGVIRRH 329
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLR +D +++ +L LW++L PGG+LL+ TCS++ EE+E+ F H
Sbjct: 330 PDIKWLRGVDDPARMAAAQRHLLAALWRVLAPGGRLLYATCSIFPEENEQVVAGFLAEHA 389
Query: 296 DSIRLNSPGQLLPT----------VNKKQDYDGFFYSLFQK 326
D+ PG L P + + DGFFY+ ++
Sbjct: 390 DA----KPGPLAPVGRCTGSGCQILPGEHGMDGFFYACLER 426
>gi|148358673|ref|YP_001249880.1| rRNA methyltransferase [Legionella pneumophila str. Corby]
gi|296108237|ref|YP_003619938.1| Sun protein [Legionella pneumophila 2300/99 Alcoy]
gi|148280446|gb|ABQ54534.1| rRNA methyltransferase (SUN protein) [Legionella pneumophila str.
Corby]
gi|295650139|gb|ADG25986.1| Sun protein [Legionella pneumophila 2300/99 Alcoy]
Length = 427
Score = 207 bits (526), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 121/340 (35%), Positives = 183/340 (53%), Gaps = 36/340 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR F R++ I + K+ + P W + +++ +PN W+ I + + P
Sbjct: 107 LVNAVLRNFCRRQDHILE-KLAAEPVFIYGQPNWLLQRLQKDWPN--NWQFIAEANDRHP 163
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLET--TIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+TLR+N K ++ Y LLKKSG+E + P I L P + +P F G S+QD
Sbjct: 164 PMTLRVNVLKNSVDEYLDLLKKSGIEAFKHPVVPDGITLAIPCDVMTLPGFAQGSVSVQD 223
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AA QLAA LL ++ G VLDAC APGGKTCH+LE +++D + RL + +NL
Sbjct: 224 AAPQLAAYLLSLKPGQRVLDACCAPGGKTCHILEKESGLASCVALDLDPQRLQRVRDNLN 283
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL+L+AT++ D+ + ++ FDRIL D PC+ +GV+RR+
Sbjct: 284 RLDLQATVVQGDVLEPR----------------SWWDGHPFDRILLDAPCSATGVIRRHS 327
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI LR +I +S+ +LN+LW +L PGG +++ TCS+ +E+E Q F H D
Sbjct: 328 DIKLLRTDEEISAISQVQSSMLNSLWPLLAPGGLMVYATCSIMSDENELQIARFVAEHSD 387
Query: 297 SI---------RLNSPG-QLLPTVNKKQDYDGFFYSLFQK 326
R G Q+LP + DGFFYS+ +K
Sbjct: 388 CQVSDGKWSWGRWTGHGQQILPG---EHGMDGFFYSVLRK 424
>gi|24371630|ref|NP_715672.1| 16S rRNA (cytosine967-C5)-methyltransferase RsmB [Shewanella
oneidensis MR-1]
gi|46396921|sp|Q8EKR0.1|RSMB_SHEON RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|24345386|gb|AAN53117.1| 16S rRNA (cytosine967-C5)-methyltransferase RsmB [Shewanella
oneidensis MR-1]
Length = 428
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 118/332 (35%), Positives = 189/332 (56%), Gaps = 34/332 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESY-WNYPIWWINQVKITYPNFFQWKNILDVGHKK 59
++N +LR R+ + + N E+ +N P W I ++K YP W+ I+ H++
Sbjct: 114 VVNGVLRNIQRQL-----TPLSNESETLSYNTPGWLIKRLKTAYPG--NWQEIIQQSHER 166
Query: 60 PPLTLRINQRKTTLISYNKLLKKSGLETTI-IGPLAIKLHTPISISKIPKFFNGFCSIQD 118
PP+ LR N+ + Y L K ++ + + AI L P ++ +P F G S+QD
Sbjct: 167 PPMWLRNNRLSQSRDEYLAALDKLEIDASAGLSDDAILLAAPKDVATLPLFLEGAASVQD 226
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
AAQ AA LL ++ +LDAC+APGGK+CHLLE+ IKLI+VD + RL + +NL R
Sbjct: 227 GAAQWAATLLAPQANELILDACAAPGGKSCHLLELEPSIKLIAVDFDAKRLERVQQNLDR 286
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L+LKA +I D + I+ +++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 287 LSLKAEVIHGDAANID----------------SWWQGEQFDRILLDAPCSATGVIRRHPD 330
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLR+ +DI++L++ +IL++ WK LKPGG LL+ TCS+ +E+ +Q F D+
Sbjct: 331 IKWLRKNHDIEELAELQRQILDHCWKWLKPGGTLLYATCSILPQENRDQISAFLARTADA 390
Query: 298 IRLNSPGQLLPTVN-------KKQDYDGFFYS 322
+L++ Q + + + + DGF+Y+
Sbjct: 391 -KLDTLVQQASSQDIGWQITPGQHNMDGFYYA 421
>gi|254784303|ref|YP_003071731.1| ribosomal RNA small subunit methyltransferase B [Teredinibacter
turnerae T7901]
gi|237683392|gb|ACR10656.1| ribosomal RNA small subunit methyltransferase B [Teredinibacter
turnerae T7901]
Length = 433
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 125/337 (37%), Positives = 195/337 (57%), Gaps = 38/337 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++N LR F R + +IFK K+ ++ +++P W + +++ ++ Q IL +++P
Sbjct: 114 LLNGALRSFQRDREQIFK-KISGKPQASFSHPNWLVARLQQSW--GAQASRILHANNQQP 170
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N ++ + Y L+++GL+ + P A++L +P+ I ++P F G S+QD
Sbjct: 171 PVCLRVNLKRQSRDEYLVKLQQAGLQAQPLASSPSAVRLLSPLDIQQLPGFSEGLVSVQD 230
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEI--ADIKLISVDNNLSRLNMISENLK 176
AAQLAA LL + G VLDAC APGGK+CH+LE A +L+ +D+ R+ + ENL
Sbjct: 231 EAAQLAAYLLALEPGQRVLDACCAPGGKSCHILEAEPALTELVCLDSEQDRMARVEENLA 290
Query: 177 RLNLK-ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRN 235
RL L ATL D S +++ N+ FDR+L D+PC+ +GV+RR+
Sbjct: 291 RLQLSGATLTTGDASTC-----------------QWWNNQPFDRVLLDVPCSATGVIRRH 333
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI LRR++D+ KLS ILNN+W+MLKPGG L++ TCS+ EE+ E F +HK
Sbjct: 334 PDIKLLRREDDLAKLSALQQAILNNVWQMLKPGGLLVYATCSVLPEENSELITQFVTDHK 393
Query: 296 DS----------IRLNSPGQLLPTVNKKQDYDGFFYS 322
D+ I + QLLP + DGF+Y+
Sbjct: 394 DAELAPMDADWGIEQPAGRQLLPQLEGP---DGFYYA 427
>gi|171464329|ref|YP_001798442.1| Fmu (Sun) domain-containing protein [Polynucleobacter necessarius
subsp. necessarius STIR1]
gi|171193867|gb|ACB44828.1| Fmu (Sun) domain protein [Polynucleobacter necessarius subsp.
necessarius STIR1]
Length = 417
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 115/311 (36%), Positives = 175/311 (56%), Gaps = 23/311 (7%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR+ K Y P WW +K Y QW++IL K+
Sbjct: 123 LVNAVLRKVSLMVQPPEGEKRYTPDPIPMYGPAWWRANIKRNYSK--QWQSILFQQAKRA 180
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLA-------IKLHTPISISKIPKFFNGF 113
PL LR+ Q++ Y LL ++G+ + I +A + L + +S P F++
Sbjct: 181 PLILRVYQKQYAREQYQALLAEAGISSKPIAEVAGVRRSFALLLPEAVPVSDPPGFYSSA 240
Query: 114 CSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISE 173
S+QDA AQLAA LL+ + G VLDAC+APGGKT HLL++AD + +++ + R+ I
Sbjct: 241 VSVQDAGAQLAAVLLNPQDGELVLDACAAPGGKTAHLLKLADCSMRALELDGERIGKIGG 300
Query: 174 NLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVR 233
NL RL L + ++ L D +K ++ FD+IL D PC+ SG+V
Sbjct: 301 NLDRLRLHSD---------KVRVLRGDASKAA-----WWDGTPFDKILLDAPCSVSGIVA 346
Query: 234 RNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKN 293
R+PDIP+LRR+ D++ L + ILN WKMLK GG LL+VTCS++ EE E++A F++
Sbjct: 347 RHPDIPFLRREADVRALQERQRAILNQAWKMLKSGGALLYVTCSIFVEEGEDKANWFTEQ 406
Query: 294 HKDSIRLNSPG 304
H +++RL++PG
Sbjct: 407 HPNAVRLDAPG 417
>gi|339061847|ref|ZP_08649047.1| Ribosomal RNA small subunit methyltransferase B [gamma
proteobacterium IMCC2047]
gi|330720125|gb|EGG98529.1| Ribosomal RNA small subunit methyltransferase B [gamma
proteobacterium IMCC2047]
Length = 436
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 124/344 (36%), Positives = 187/344 (54%), Gaps = 42/344 (12%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESY-WNYPIWWINQVKITYPNFFQWKNILDVGHKK 59
+INAILR R+K + S N Y +++P W I ++K +P W+ I +++
Sbjct: 117 LINAILRRSQREKEAMLDS--LNKKTDYLYSHPYWLIKRLKQAWPEH--WQQICAANNER 172
Query: 60 PPLTLRINQRKTTLISYNKLLKKSGL--ETTIIGPLAIKLHTPISISKIPKFFNGFCSIQ 117
P++LR+N + Y + L + + + + I L P ++ +P F +G CS+Q
Sbjct: 173 APMSLRVNALRNNRADYLEKLNNANIKAQASPFSQHGINLEKPTNVETLPGFTDGQCSVQ 232
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEI----ADIKLISVDNNLSRLNMISE 173
D AAQLAA LL + VLDAC+APGGKTCHLLE+ A + + +D + R I +
Sbjct: 233 DEAAQLAATLLQLEPNQRVLDACAAPGGKTCHLLELQPQLASVTALELDAD--RAQRIHQ 290
Query: 174 NLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVR 233
NL+RL L AT++ D S+ N +++ + +DRIL D PC+ +GV+R
Sbjct: 291 NLERLQLSATVVEGDASQPN----------------KWWDQQPYDRILLDAPCSATGVIR 334
Query: 234 RNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKN 293
R+PDI LRR +DI +L+K +IL LW +LKP G LL+ TCS+ EE+E+ F K
Sbjct: 335 RHPDIKLLRRDDDITELAKLQLQILQALWPLLKPHGILLYATCSVLPEENEQVISTFLKQ 394
Query: 294 HKDSIRL------NSPG----QLLPTVNKKQDYDGFFYSLFQKR 327
+ L PG QL P + Q +DGF+Y+ QK+
Sbjct: 395 QCQAKILPFEADWGIPGAVGRQLFP---QPQGHDGFYYARIQKQ 435
>gi|336313695|ref|ZP_08568634.1| methionyl-tRNA formyltransferase [Shewanella sp. HN-41]
gi|335862716|gb|EGM67908.1| methionyl-tRNA formyltransferase [Shewanella sp. HN-41]
Length = 429
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 114/303 (37%), Positives = 176/303 (58%), Gaps = 28/303 (9%)
Query: 29 WNYPIWWINQVKITYPNFFQWKNILDVGHKKPPLTLRINQRKTTLISYNKLLKKSGLETT 88
+N P W I ++K YP+ W+ I+ H++PP+ LR N+ + Y L + +E +
Sbjct: 139 YNTPGWLIKRLKAAYPD--NWQEIIQQSHERPPMWLRNNRLSQSRDEYLAALSELEIEAS 196
Query: 89 I-IGPLAIKLHTPISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKT 147
+ AI L P ++ +P+F G S+QD AAQ AA LL ++ +LDAC+APGGK+
Sbjct: 197 AGLSDDAILLAHPKDVATLPRFHEGAASVQDGAAQWAATLLAPKANELILDACAAPGGKS 256
Query: 148 CHLLEIA-DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTN 206
CHLLE+ IKL++VD + RL + +NL RL+L A LI D + I+
Sbjct: 257 CHLLELEPSIKLVAVDFDAKRLERVQQNLDRLSLTAKLIHGDAANID------------- 303
Query: 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLK 266
++ + FDRIL D PC+ +GV+RR+PDI WLR+ +DI++L++ +IL++ WK LK
Sbjct: 304 ---SWWHGEQFDRILLDAPCSATGVIRRHPDIKWLRKNHDIEELAELQQQILDHCWKWLK 360
Query: 267 PGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPT------VNKKQD-YDGF 319
PGG LL+ TCS+ +E+ +Q F D+ +L++ Q T + QD DGF
Sbjct: 361 PGGTLLYATCSILPQENRDQINAFLARTADA-KLDTLTQQASTQDIGWQITPGQDNMDGF 419
Query: 320 FYS 322
+Y+
Sbjct: 420 YYA 422
>gi|149375620|ref|ZP_01893389.1| Fmu, rRNA SAM-dependent methyltransferase [Marinobacter algicola
DG893]
gi|149360022|gb|EDM48477.1| Fmu, rRNA SAM-dependent methyltransferase [Marinobacter algicola
DG893]
Length = 433
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 112/341 (32%), Positives = 192/341 (56%), Gaps = 42/341 (12%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++N +LR R+ + +++P+W + +++ +P+ W+ IL+ + +
Sbjct: 117 LVNGVLRAAEREGEPPLADEA-----GRFSHPLWMLEKLRHNWPH--DWQAILETNNTQA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLET--TIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+TLR+N + + Y +LL +G++ T+ P I+L P+ + +P F G S+QD
Sbjct: 170 PMTLRVNALRFSRDDYLQLLSDAGIDAKATLFAPHGIQLTAPVPVDLLPWFSEGAVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADI--KLISVDNNLSRLNMISENLK 176
AAQL L+D+ G VLDAC+APGGKTC +LE +++++D + RL + ENL+
Sbjct: 230 EAAQLCTTLMDLAPGQRVLDACAAPGGKTCAILESCGELEEVVAIDESADRLPRVQENLE 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL+L ATL +D + I+ +++ K FDRIL D+PC+ +GV+RR+P
Sbjct: 290 RLDLMATLKQADAADID----------------QWWDRKPFDRILLDVPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI LRR++DI L+ +L ++W++L PGG+L++ TCS++ +E+ F K +D
Sbjct: 334 DIKLLRRESDIVPLASIQLGLLESMWQVLAPGGRLVYATCSVFPQENHRIIRRFLK-QQD 392
Query: 297 SIRLNSPG-----------QLLPTVNKKQDYDGFFYSLFQK 326
+ L P Q+LP + +DGFFY++ +K
Sbjct: 393 NAALVEPDVLWGRDMETGRQMLPV---PESHDGFFYAVLEK 430
>gi|153209759|ref|ZP_01947497.1| ribosomal RNA small subunit methyltransferase B [Coxiella burnetii
'MSU Goat Q177']
gi|212217708|ref|YP_002304495.1| 16S rRNA m(5)C 967 methyltransferase [Coxiella burnetii CbuK_Q154]
gi|120575262|gb|EAX31886.1| ribosomal RNA small subunit methyltransferase B [Coxiella burnetii
'MSU Goat Q177']
gi|212011970|gb|ACJ19350.1| 16S rRNA m(5)C 967 methyltransferase [Coxiella burnetii CbuK_Q154]
Length = 430
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 124/343 (36%), Positives = 191/343 (55%), Gaps = 39/343 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR F+ +K E+ I E + +P+W+I +K +P+ W++IL + +
Sbjct: 108 LINKLLRRFIAEKDELLTFTEKTI-EGQYAHPLWFIQHIKKAWPD--HWESILIANNARH 164
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+TLR+N K + Y ++L + + + P AI+L P S+ ++P F G+C IQD
Sbjct: 165 PMTLRVNLTKISREIYLEMLDQKNISAKPLDFLPAAIQLEKPCSVHQLPGFNEGYCYIQD 224
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEI-ADIK-LISVDNNLSRLNMISENLK 176
AA Q AA LL + + VLDAC+APG KT H+LE+ +K L+++DNN RLN I EN+
Sbjct: 225 AAGQFAAYLLKLENNQTVLDACAAPGSKTSHILEVNPHLKTLVAIDNNKQRLNRIKENIT 284
Query: 177 RLNLKA---TLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVR 233
RL L+ +L+D+S+I+ ++ + FDRIL D PC+ +GV+R
Sbjct: 285 RLGLRQEHLQCLLADVSQID----------------QWSSGELFDRILLDAPCSATGVIR 328
Query: 234 RNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKN 293
R+PDI LR+ DI + + ++LN LW +LK GG LL+ TCS+ +E+E+ F
Sbjct: 329 RHPDIKLLRQPGDISQYHQKKLQLLNALWTVLKAGGFLLYSTCSVLPDENEKVIEEFLST 388
Query: 294 H----------KDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 326
H ++L Q LP + K DGF+YSL K
Sbjct: 389 HDKVELSPTNVHGGLQLKYGVQQLPGQDNK---DGFYYSLLFK 428
>gi|397665183|ref|YP_006506721.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Legionella
pneumophila subsp. pneumophila]
gi|395128594|emb|CCD06812.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Legionella
pneumophila subsp. pneumophila]
Length = 427
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 120/340 (35%), Positives = 183/340 (53%), Gaps = 36/340 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR F R++ I + K+ + P W + +++ +PN W+ I + + P
Sbjct: 107 LVNAVLRNFCRRQDHILE-KLAAEPVFIYGQPNWLLQRLQKDWPN--DWQFIAEANDRHP 163
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLET--TIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+TLR+N K ++ Y LLKKSG+E + P I L P + +P F G S+QD
Sbjct: 164 PMTLRVNVLKHSVDEYLDLLKKSGIEAFKHPVAPDGITLAIPCDVMTLPGFAQGSVSVQD 223
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
A+ QLAA LL ++ G VLDAC APGGKTCH+LE +++D + RL + +NL
Sbjct: 224 ASPQLAAYLLSLKPGQRVLDACCAPGGKTCHILEKESGLASCVALDLDPQRLQRVRDNLN 283
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL+L+AT++ D+ + ++ FDRIL D PC+ +GV+RR+
Sbjct: 284 RLDLQATVVEGDVLEPR----------------SWWDGHPFDRILLDAPCSATGVIRRHS 327
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI LR +I +S+ +LN+LW +L PGG +++ TCS+ +E+E Q F H D
Sbjct: 328 DIKLLRTDEEISAISQIQSSMLNSLWPLLAPGGLMVYATCSIMSDENELQIARFVAEHPD 387
Query: 297 SI---------RLNSPG-QLLPTVNKKQDYDGFFYSLFQK 326
R G Q+LP + DGFFYS+ +K
Sbjct: 388 CQVSDGKWSWGRWAGHGQQILPG---EHGMDGFFYSVLRK 424
>gi|114045538|ref|YP_736088.1| sun protein [Shewanella sp. MR-7]
gi|113886980|gb|ABI41031.1| sun protein [Shewanella sp. MR-7]
Length = 429
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 111/303 (36%), Positives = 179/303 (59%), Gaps = 28/303 (9%)
Query: 29 WNYPIWWINQVKITYPNFFQWKNILDVGHKKPPLTLRINQRKTTLISYNKLLKKSGLETT 88
+N P W I ++K YP+ W+ I+ H++PP+ LR N+ + +Y L + +E +
Sbjct: 139 YNTPGWLIKRLKAAYPD--NWQEIILQSHERPPMWLRNNRLSQSRDAYLATLSELEIEAS 196
Query: 89 I-IGPLAIKLHTPISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKT 147
+ AI L P ++ +P+F G S+QD AAQ AA LL ++ VLDAC+APGGK+
Sbjct: 197 AGLSDDAILLAHPKDVATLPRFHEGAASVQDGAAQWAATLLAPQANELVLDACAAPGGKS 256
Query: 148 CHLLEIA-DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTN 206
CHLLE+ I+L++VD + RL + +NL RL+LKA +I D + I+
Sbjct: 257 CHLLELEPSIQLVAVDFDAKRLERVQQNLDRLSLKAEVIHGDAANID------------- 303
Query: 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLK 266
+++ + FDRIL D PC+ +GV+RR+PDI WLR+ +DI++L++ +IL++ WK LK
Sbjct: 304 ---SWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRKNHDIEELAELQRQILDHSWKWLK 360
Query: 267 PGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVN-------KKQDYDGF 319
PGG LL+ TCS+ +E+ +Q F D+ +L++ Q + + + + DGF
Sbjct: 361 PGGTLLYATCSILPQENRDQISAFLARTADA-KLDTLAQQASSQDIGWQITPGQHNMDGF 419
Query: 320 FYS 322
+Y+
Sbjct: 420 YYA 422
>gi|145300988|ref|YP_001143829.1| ribosomal RNA small subunit methyltransferase B [Aeromonas
salmonicida subsp. salmonicida A449]
gi|418362668|ref|ZP_12963294.1| 16S rRNA methyltransferase B [Aeromonas salmonicida subsp.
salmonicida 01-B526]
gi|142853760|gb|ABO92081.1| ribosomal RNA small subunit methyltransferase B [Aeromonas
salmonicida subsp. salmonicida A449]
gi|356686117|gb|EHI50728.1| 16S rRNA methyltransferase B [Aeromonas salmonicida subsp.
salmonicida 01-B526]
Length = 430
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 119/337 (35%), Positives = 178/337 (52%), Gaps = 29/337 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR F R E+ ++ + +P W +++ YP W+ I++ +++P
Sbjct: 113 LINGVLRNFQRS-AEVILLRIDRVPSIRLGHPEWLTKRLRQAYPE--DWEFIMEANNQRP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTI--IGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ +R N ++ + + G+ G I L P ++K+P F G CS+QD
Sbjct: 170 PMWIRNNSQRQGREQMLARMAEVGINAVAGQEGEDCILLERPCDVTKLPGFETGDCSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE--IADIKLISVDNNLSRLNMISENLK 176
AAQ AA LLD + G +VLDAC+APGGKT HLLE A +++VD + +RL + ENL
Sbjct: 230 GAAQQAARLLDPQPGEWVLDACAAPGGKTAHLLERQPALAGVVAVDADENRLKRVQENLD 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
R+ L+A +I D S L ++ FDRIL D PC+ +GV+RR+P
Sbjct: 290 RIGLQARVIHGDASTPEL----------------WWPQGQFDRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLRR DI++L++ +IL LW LK GG LL+ TCS+ EE+ EQ F D
Sbjct: 334 DIKWLRRDQDIRELAELQRRILIALWSKLKSGGTLLYATCSVLPEENREQIRAFLATTPD 393
Query: 297 SIRLNSPGQLLPTVNKKQ------DYDGFFYSLFQKR 327
+ + Q P +Q + DGF+Y+ KR
Sbjct: 394 ATLVPLHAQDTPDCPGRQFLPGEAEMDGFYYAKLIKR 430
>gi|187732355|ref|YP_001881972.1| 16S rRNA methyltransferase B [Shigella boydii CDC 3083-94]
gi|224493269|sp|B2U2Q6.1|RSMB_SHIB3 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|187429347|gb|ACD08621.1| ribosomal RNA small subunit methyltransferase B [Shigella boydii
CDC 3083-94]
Length = 429
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 112/333 (33%), Positives = 196/333 (58%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAK--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++ ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNSEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+R +
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRHH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGAPEQPGKQNLPGA---EEGDGFFYA 424
>gi|254435259|ref|ZP_05048766.1| ribosomal RNA small subunit methyltransferase B [Nitrosococcus
oceani AFC27]
gi|207088370|gb|EDZ65642.1| ribosomal RNA small subunit methyltransferase B [Nitrosococcus
oceani AFC27]
Length = 435
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 119/338 (35%), Positives = 190/338 (56%), Gaps = 30/338 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
M+NA LR +LR + ++++ ++ +P W ++ ++ ++P+ W I+ + P
Sbjct: 117 MLNATLRAYLRNE-TALQTQVTAHETAHTAHPQWLLDAIRNSWPD--HWPQIITANNSHP 173
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
PL+LRIN+ + +Y + LK++ ++ I + L P ++ +P F G S+QD
Sbjct: 174 PLSLRINRLQNNRKNYLQELKRNDIKAWPIPHTESGVILEQPCQVATLPGFLKGQVSVQD 233
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADI--KLISVDNNLSRLNMISENLK 176
A Q AAPLL + G VLDAC+APGGKT H+LE+ LI++D + +RL ++ NLK
Sbjct: 234 GAGQRAAPLLALTPGQRVLDACAAPGGKTSHILELEPQLETLIALDLDATRLERLNSNLK 293
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL LKA +I + + + ++ FDRIL D PC+GSGV+RR+P
Sbjct: 294 RLQLKAEVIQGNALQPDT----------------WWDGIPFDRILLDAPCSGSGVIRRHP 337
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI LRR++DI L+ ++L+ LW +L PGG LL+ TCS+ E+E+Q F H D
Sbjct: 338 DIKALRRESDILPLATLQKRLLSALWPLLAPGGMLLYCTCSILPIENEQQIREFLLTHPD 397
Query: 297 SIR--LNSPGQLLPTVNKK-----QDYDGFFYSLFQKR 327
L+ P LL T ++ ++ DGF+Y+ +KR
Sbjct: 398 GQERPLDVPWGLLQTAGRQLLTGMEELDGFYYACLEKR 435
>gi|113968373|ref|YP_732166.1| sun protein [Shewanella sp. MR-4]
gi|113883057|gb|ABI37109.1| sun protein [Shewanella sp. MR-4]
Length = 429
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 110/303 (36%), Positives = 178/303 (58%), Gaps = 28/303 (9%)
Query: 29 WNYPIWWINQVKITYPNFFQWKNILDVGHKKPPLTLRINQRKTTLISYNKLLKKSGLETT 88
+N P W I ++K YP+ W+ I+ H++PP+ LR N+ + Y L + +E +
Sbjct: 139 YNTPGWLIKRLKAAYPD--NWQEIILQSHERPPMWLRNNRLSQSRDEYLAALSELEIEAS 196
Query: 89 I-IGPLAIKLHTPISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKT 147
+ AI L P ++ +P+F G S+QD AAQ AA LL ++ +LDAC+APGGK+
Sbjct: 197 AGLSDDAILLAHPKDVTTLPRFHEGAASVQDGAAQWAATLLAPQANELILDACAAPGGKS 256
Query: 148 CHLLEIA-DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTN 206
CHLLE+ I+L++VD + RL + +NL RL+LKA +I D + I+
Sbjct: 257 CHLLELEPSIQLVAVDFDAKRLERVQQNLDRLSLKAEVIHGDAANID------------- 303
Query: 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLK 266
+++ + FDRIL D PC+ +GV+RR+PDI WLR+ +DI++L++ +IL++ WK LK
Sbjct: 304 ---SWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRKNHDIEELAELQRQILDHCWKWLK 360
Query: 267 PGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVN-------KKQDYDGF 319
PGG LL+ TCS+ +E+ +Q F D+ +L++ Q + + + + DGF
Sbjct: 361 PGGTLLYATCSILPQENRDQISAFLARTADA-KLDTLAQQASSQDIGWQITPGQHNMDGF 419
Query: 320 FYS 322
+Y+
Sbjct: 420 YYA 422
>gi|77166463|ref|YP_344988.1| rRNA SAM-dependent methyltransferase [Nitrosococcus oceani ATCC
19707]
gi|76884777|gb|ABA59458.1| 16S rRNA m(5)C-967 methyltransferase [Nitrosococcus oceani ATCC
19707]
Length = 403
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 119/338 (35%), Positives = 190/338 (56%), Gaps = 30/338 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
M+NA LR +LR + ++++ ++ +P W ++ ++ ++P+ W I+ + P
Sbjct: 85 MLNATLRAYLRNE-TALQTQVTAHETAHTAHPQWLLDAIRNSWPD--HWPQIITANNSHP 141
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
PL+LRIN+ + +Y + LK++ ++ I + L P ++ +P F G S+QD
Sbjct: 142 PLSLRINRLQNNRKNYLQELKRNDIKAWPIPHTESGVILEQPCQVATLPGFLKGQVSVQD 201
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADI--KLISVDNNLSRLNMISENLK 176
A Q AAPLL + G VLDAC+APGGKT H+LE+ LI++D + +RL ++ NLK
Sbjct: 202 GAGQRAAPLLALTPGQRVLDACAAPGGKTSHILELEPQLETLIALDLDATRLERLNSNLK 261
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL LKA +I + + + ++ FDRIL D PC+GSGV+RR+P
Sbjct: 262 RLQLKAEVIQGNALQPDT----------------WWDGIPFDRILLDAPCSGSGVIRRHP 305
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI LRR++DI L+ ++L+ LW +L PGG LL+ TCS+ E+E+Q F H D
Sbjct: 306 DIKALRRESDILPLATLQKRLLSALWPLLAPGGMLLYCTCSILPIENEQQIREFLLTHPD 365
Query: 297 SIR--LNSPGQLLPTVNKK-----QDYDGFFYSLFQKR 327
L+ P LL T ++ ++ DGF+Y+ +KR
Sbjct: 366 GQERPLDVPWGLLQTAGRQLLTGMEELDGFYYACLEKR 403
>gi|289824193|ref|ZP_06543788.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhi str. E98-3139]
Length = 403
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 104/300 (34%), Positives = 181/300 (60%), Gaps = 27/300 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + ++ + +P W + +++ YP QW+ I++ +++P
Sbjct: 117 LINGVLRQFQRQQETLLNE--FATSDARFLHPGWLVKRLQNAYPT--QWQRIIEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T + LL+ +G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ A L ++G ++LD C+APGGKT H+LE+A + +++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVLAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LKPGG L++ TCS+ EE+ +Q FS + +
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKAFSTHSR 394
>gi|308188325|ref|YP_003932456.1| ribosomal RNA small subunit methyltransferase B [Pantoea vagans
C9-1]
gi|308058835|gb|ADO11007.1| Ribosomal RNA small subunit methyltransferase B [Pantoea vagans
C9-1]
Length = 433
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 112/331 (33%), Positives = 193/331 (58%), Gaps = 32/331 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++N +LR+F R++ E+ S + + + Y +P W + +++ +P QW+ I++ + +P
Sbjct: 117 LLNGVLRQFQRQREELLAS-IQDGPQRYL-HPGWLLKRLQHAWPE--QWQQIVEANNLRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKK--SGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N++ ++ +L + + P A++L P +S++P F G+ ++QD
Sbjct: 173 PMWLRVNRQHHNRDAWLAMLVEIDRNAQPADDVPDALRLDAPAPVSQLPGFDQGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
+AQ A LL+ ++G +LD C+APGGKT H+LEIA + ++++VD + RL + ENL+R
Sbjct: 233 LSAQRCALLLEPQNGEQILDLCAAPGGKTTHILEIAPEAEVMAVDVDAQRLKRVEENLQR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KA + K+ + R ++ ++ FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKADV------------------KQGDGRTPQQWCGDRQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L+K +IL+ +W LKPGG L++ TCS+ EE+ +Q F +
Sbjct: 335 PDIKWLRRDRDIAELAKLQSEILDAIWPHLKPGGTLIYATCSILPEENHQQIEAFLQRQH 394
Query: 296 D----SIRLNSPGQLLPTVNKKQDYDGFFYS 322
D S+R +P L + + DGFFY+
Sbjct: 395 DAQAESLR-GAPANGLQVFPQAEGGDGFFYA 424
>gi|317049808|ref|YP_004117456.1| sun protein [Pantoea sp. At-9b]
gi|316951425|gb|ADU70900.1| sun protein [Pantoea sp. At-9b]
Length = 428
Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 111/340 (32%), Positives = 190/340 (55%), Gaps = 41/340 (12%)
Query: 1 MINAILREFLRKK----GEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVG 56
++N +LR+F R++ E+ + ++H P W + +++ +P QW+ I++
Sbjct: 117 LLNGVLRQFQRQQEALVAEVDQGTQRHLH------PAWLLKRLQTAWPE--QWQQIVEAN 168
Query: 57 HKKPPLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFC 114
+++PP+ LR+N++ ++ LL+++ ++ +G P +++L P ++ ++P F G+
Sbjct: 169 NQRPPMWLRVNRQHHPRDTWLALLEETE-KSAFVGDAPDSLRLEAPTAVGQLPGFDQGWV 227
Query: 115 SIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISE 173
++QD +AQ A LL+ ++G +LD C+APGGKT H+LEIA +++VD + RL + E
Sbjct: 228 TVQDLSAQRCALLLEPQNGESILDLCAAPGGKTTHILEIAPQAAVLAVDIDEQRLTRVRE 287
Query: 174 NLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVR 233
NL+RL ++A + D + +K FDRIL D PC+ +GV+R
Sbjct: 288 NLQRLGMQADVRQGD----------------GRTPAEWCGDKQFDRILLDAPCSATGVIR 331
Query: 234 RNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKN 293
R+PDI WLRR DI +L+ +IL+ +W LK GG LL+ TCS+ EE+ +Q F
Sbjct: 332 RHPDIKWLRRDRDIAELASLQREILHAVWPRLKSGGTLLYATCSVLPEENHQQITAFLAT 391
Query: 294 HKDSIRLNSPG------QLLPTVNKKQDYDGFFYSLFQKR 327
H D+I P Q+ P + DGFFY+ K+
Sbjct: 392 HPDAIAEALPHGQENGWQVFPATDGG---DGFFYAKLMKK 428
>gi|322831104|ref|YP_004211131.1| sun protein [Rahnella sp. Y9602]
gi|384256272|ref|YP_005400206.1| 16S rRNA methyltransferase B [Rahnella aquatilis HX2]
gi|321166305|gb|ADW72004.1| sun protein [Rahnella sp. Y9602]
gi|380752248|gb|AFE56639.1| 16S rRNA methyltransferase B [Rahnella aquatilis HX2]
Length = 429
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 117/332 (35%), Positives = 196/332 (59%), Gaps = 34/332 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + +M N ++S +P W +N++K YP W++I+D +++P
Sbjct: 117 LINGVLRQFQRQQEELLQ-RMAN-NDSRHLHPSWLLNRLKKAYPT--DWESIVDANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL---AIKLHTPISISKIPKFFNGFCSIQ 117
P+ LR+N++ T Y LL + +E + P A++L+TP ++ +P F G+ ++Q
Sbjct: 173 PMWLRVNRQHHTRDEYLHLLNEVHIEA-VPHPEYRDALRLNTPCQVNLLPGFTEGWVTVQ 231
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
DA+AQ + LLD ++G +LD C APGGKT H+LE A +++VD + RL + ENL+
Sbjct: 232 DASAQGSVDLLDPQNGELILDLCCAPGGKTTHILEAAPKAHVLAVDVDEQRLKRVHENLQ 291
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A + D + + + ++ FDRIL D PC+ +GV+RR+P
Sbjct: 292 RLKLSAEVKQGDGREPQM----------------WAGDRIFDRILLDAPCSATGVIRRHP 335
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLRR +DI +L+ +IL+ +W LK G +++ TCS+ +E+ +Q F ++H+D
Sbjct: 336 DIKWLRRDSDIVELASLQKEILDAVWPRLKSKGIMVYATCSILPDENCQQIASFLESHQD 395
Query: 297 SI-----RLNSPG-QLLPTVNKKQDYDGFFYS 322
+ + PG Q LP +D DGF+Y+
Sbjct: 396 ATLVETGTMEKPGRQNLP---HPEDGDGFYYA 424
>gi|269468281|gb|EEZ79965.1| ribosomal RNA small subunit methyltransferase B [uncultured SUP05
cluster bacterium]
Length = 423
Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 116/335 (34%), Positives = 192/335 (57%), Gaps = 35/335 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NAILR+ R K + ++++++P W + ++K YP+ F+ I + +
Sbjct: 113 LVNAILRQIDRDKDSLLA-------QTHYSHPTWLVKKIKQNYPDDFE--QIFTQNNTQA 163
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+T+R++ K+++ Y + L +++ I P A+ L P+S+ +P F +G C +QD
Sbjct: 164 PMTIRVHP-KSSVDDYQQSLANENVQSNKLEITPQALILDKPMSVYDLPDFESGSCYVQD 222
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQLAA LLD ++ +LDACSAPGGK HL E+A + ++++DN+ RL + +N +R
Sbjct: 223 ASAQLAANLLDPKNNDVILDACSAPGGKATHLCELAPNATIVALDNSSERLERVKQNTQR 282
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
N+ I+I K + ++ + F++IL D PC+ +GV+RR+PD
Sbjct: 283 FNIDN----------------IEIIKGNAQQQDWWDGELFNKILLDAPCSATGVIRRHPD 326
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I LR+ DI L K KIL NLW MLKP G LL+ TCS+ E+E+Q F ++H D+
Sbjct: 327 IKLLRKPKDITNLVKLQAKILANLWSMLKPDGVLLYATCSILKSENEDQITHFLESHPDA 386
Query: 298 --IRLNSPGQLLPTVNKKQ----DYDGFFYSLFQK 326
I+ N + V K+Q ++DGF+Y+ +K
Sbjct: 387 EEIKTNLDWGIDSFVGKQQLPSHEFDGFYYAKIRK 421
>gi|392952180|ref|ZP_10317735.1| hypothetical protein WQQ_18070 [Hydrocarboniphaga effusa AP103]
gi|391861142|gb|EIT71670.1| hypothetical protein WQQ_18070 [Hydrocarboniphaga effusa AP103]
Length = 432
Score = 204 bits (518), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 117/338 (34%), Positives = 192/338 (56%), Gaps = 30/338 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNF-FQWKNILDVGHKK 59
++NA+LR + R++ E ++ + + ++P W + +V Y ++ + +++L +++
Sbjct: 111 LVNALLRRYQRER-ETLEAALPRDSATTHSFPQWIVERV---YDDWGLEAESVLVASNEQ 166
Query: 60 PPLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQ 117
PL LR+N+R+ SY L+ +GL I P AI L + + + K+P F +G S+Q
Sbjct: 167 APLVLRVNRRRIDRASYLAKLQAAGLAAQAIDAVPEAIALESAVPVEKLPGFADGEVSVQ 226
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKR 177
DA+AQL LLD+ G VLDAC+APGGKT H LE+AD+++ ++D + RL ++ENL+R
Sbjct: 227 DASAQLMGQLLDLEDGQRVLDACAAPGGKTSHALELADVQMTALDIDRDRLTRVNENLRR 286
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L A + +D S+ + ++ + FDRIL D PC+GSGV+RR+PD
Sbjct: 287 LGLSADVRAADASRPS----------------SWWDEQPFDRILLDAPCSGSGVIRRHPD 330
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIF----SKN 293
I WLRR +DI + + +L LW +L PGG L++ TCS++ E E+ F
Sbjct: 331 IRWLRRPDDIARFADRQKNLLTALWPLLAPGGVLVYATCSIFKGEGEDVVKQFLVRIPDA 390
Query: 294 HKDSIRLNSPGQ---LLPTVNKKQDYDGFFYSLFQKRK 328
++ I N+ G+ L + +DGF+Y+ K K
Sbjct: 391 KQEVIDTNAWGESCKLGRRIAPNGPFDGFYYAKLIKPK 428
>gi|359787044|ref|ZP_09290115.1| Sun protein [Halomonas sp. GFAJ-1]
gi|359295694|gb|EHK59957.1| Sun protein [Halomonas sp. GFAJ-1]
Length = 444
Score = 204 bits (518), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 119/342 (34%), Positives = 188/342 (54%), Gaps = 36/342 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++N LR L+++ E ++ + +P W + ++ +P+ QW+ I + ++
Sbjct: 122 VLNGCLRR-LQREAEELQADVDREEHVALEHPPWLLTALRDAWPD--QWRAIAEANNEPG 178
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTII--GPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+TLR+NQ +Y L + GL + P I L+TP +S +P F G S+QD
Sbjct: 179 PMTLRVNQHHNDREAYLAQLVEQGLSGYLCPHAPDGITLNTPCDVSVLPGFEQGHVSVQD 238
Query: 119 AAAQLAA----PLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISEN 174
AAQL+A P L R G +VLDAC APGGKT HLLE DI L ++D++ RL + +
Sbjct: 239 EAAQLSAALLGPALAPRPGAHVLDACCAPGGKTAHLLEQFDIALTAIDSDNQRLGRVDDT 298
Query: 175 LKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRR 234
L RL L A L +D ++ + ++ FD IL D PC+G+GV+RR
Sbjct: 299 LNRLGLTAELQHADATQQD-----------------WWSGTSFDAILLDAPCSGTGVIRR 341
Query: 235 NPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH 294
+PDI LRRK DI++L+K ++L+NLW +L+PGG LL+ TCS+ E+ +Q F
Sbjct: 342 HPDIKTLRRKEDIRQLAKLQQQLLDNLWPLLRPGGTLLYATCSVLPAENADQIDAFIART 401
Query: 295 KDSIRLNSPGQL---LPTVNKKQ------DYDGFFYSLFQKR 327
D+ ++ +P + +P+ +Q +DGFFY+ +K+
Sbjct: 402 PDA-KVTTPSDVAWGIPSGEGRQLFPEQGSHDGFFYARLEKQ 442
>gi|284006133|emb|CBA71374.1| 16S rRNA methyltransferase B [Arsenophonus nasoniae]
Length = 426
Score = 204 bits (518), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 124/328 (37%), Positives = 191/328 (58%), Gaps = 29/328 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR+F R++ +I K N +Y +P W + +++ YP QWK IL+ ++KP
Sbjct: 117 LINAVLRQFQRQE-QILNEKANNNENNYL-HPKWLLEKIQQVYPA--QWKEILEANNQKP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTII--GPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+NQ + Y LL+++G+E ++ AIKL P +I+K+P F G+ +IQD
Sbjct: 173 PMWLRVNQLYHSTNDYLMLLQQAGIEASLSNDSKFAIKLQKPCAINKLPGFDQGWVTIQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
+AQ LL ++G Y+LD C+APGGKT ++LE+A +++VD + R+ I ENL R
Sbjct: 233 LSAQRCVELLAPKNGEYILDLCAAPGGKTTYILELAPKADVLAVDIDQLRIKRIQENLNR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
+ L A +I+ D K + FDRIL D PC+ +GV+RR+PD
Sbjct: 293 VKLHARVIVGDGRK----------------PLEWISGAKFDRILLDAPCSATGVIRRHPD 336
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLR+ DI +L K KIL +W LK G L++ TCS+ +E++EQ F +H ++
Sbjct: 337 IKWLRKPIDIPQLVKLQYKILEAIWPYLKTNGTLVYATCSILPDENKEQIKKFLFHHPEA 396
Query: 298 IRLNS---PGQLLPTVNKKQDYDGFFYS 322
N+ Q+LPT ++ DGFFY+
Sbjct: 397 SLNNNMELGQQILPT---QRGGDGFFYA 421
>gi|290477163|ref|YP_003470078.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Xenorhabdus bovienii
SS-2004]
gi|289176511|emb|CBJ83320.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Xenorhabdus bovienii
SS-2004]
Length = 428
Score = 204 bits (518), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 120/337 (35%), Positives = 186/337 (55%), Gaps = 37/337 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + ++ N+ S +P W ++ ++ YP W+ I+D ++KP
Sbjct: 117 LINGVLRQFQRQQ-QTLVEQVNNV--SCHLHPKWLLDHIQKAYPQ--DWQKIIDANNQKP 171
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTII--GPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+NQR + Y LL+++ ++ + P AI+L P ++ +P F G+ +IQD
Sbjct: 172 PMWLRVNQRYHSANQYLALLQEANIDAELDENHPSAIRLLNPCPVNTLPGFDQGWVTIQD 231
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
+AQ A LL G +LD C+APGGKT H+LEIA K+++VD + R+ + ENL+R
Sbjct: 232 RSAQGCAELLTPCDGESILDLCAAPGGKTTHILEIAPKSKVLAVDIDEQRIKRVKENLQR 291
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
LNL A + K + RF + + FDRIL D PC+ +GV+RR+
Sbjct: 292 LNLHAVV------------------KTGDGRFPHEWATGEQFDRILLDAPCSATGVIRRH 333
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L +IL+ +W LK G L++ TCS+ E+ +Q F H
Sbjct: 334 PDIKWLRRNEDIDQLVTLQTEILDAIWPYLKKHGTLVYATCSILPHENSQQIKAFLGRHT 393
Query: 296 DSI-----RLNSPG-QLLPTVNKKQDYDGFFYSLFQK 326
D+ L+ PG Q++P DGFFY+ K
Sbjct: 394 DAALSDTGTLDKPGIQIIPETTGG---DGFFYARLTK 427
>gi|387130879|ref|YP_006293769.1| Ribosomal RNA small subunit methyltransferase B [Methylophaga sp.
JAM7]
gi|386272168|gb|AFJ03082.1| Ribosomal RNA small subunit methyltransferase B [Methylophaga sp.
JAM7]
Length = 435
Score = 203 bits (517), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 113/336 (33%), Positives = 179/336 (53%), Gaps = 29/336 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA LRE+ R + + F + +P W + QV+ +P W++IL+ ++
Sbjct: 118 LINACLREYQRHR-DTFDQALTQTPTGLHEHPDWLVTQVRHDWPE--DWQSILEANNQHA 174
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLA--IKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N ++ + Y LL + + + A I+L P + +P F G+ S+QD
Sbjct: 175 PMFLRVNLQRCSRQQYLDLLHQDNRQAEPLANCAAGIRLSQPCDVRLLPNFDAGWVSVQD 234
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAQ LLD+ G VLDAC+APGGKT H+LE +I L+++D +RL + ++LKR
Sbjct: 235 GAAQQVIELLDLHVGHVVLDACAAPGGKTAHMLEHQPEIDLLALDIESTRLQRVDDSLKR 294
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L A + +D + ++ FDRIL D PCTGSGV+RR+PD
Sbjct: 295 LGLTAKTLTADAASPEA----------------WWHGNAFDRILIDAPCTGSGVIRRHPD 338
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I +LR+ DI L+ +L+ LW +LK GG++++ TCS++ E+ Q F H D+
Sbjct: 339 IKFLRKPADIPSLAAQQAYLLDKLWPLLKRGGRMVYTTCSIFTAENAHQIEAFLARHPDA 398
Query: 298 IRLNS---PGQLLP----TVNKKQDYDGFFYSLFQK 326
+ + PG+ P + +DGFFY+ Q+
Sbjct: 399 SLIKADQPPGRETPFGYQRLPGDDAFDGFFYACLQR 434
>gi|146313354|ref|YP_001178428.1| 16S rRNA methyltransferase GidB [Enterobacter sp. 638]
gi|224493252|sp|A4WF97.1|RSMB_ENT38 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|145320230|gb|ABP62377.1| 16S rRNA m(5)C-967 methyltransferase [Enterobacter sp. 638]
Length = 428
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 113/331 (34%), Positives = 189/331 (57%), Gaps = 32/331 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + + + +P W + +++ YP+ +W+ I++ +++P
Sbjct: 116 LINGVLRQFQRQQEELLAE--FADSDKRFLHPEWLLKRLQKAYPS--KWEAIVEANNQRP 171
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLE--TTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T + LL+ + + T P AI+L +P + +P F G+ ++QD
Sbjct: 172 PMWLRVNRNHHTRDEWLALLETAEMNGFTHDAYPDAIRLASPAPVQALPGFEQGWVTVQD 231
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L+ ++G ++LD C+APGGKT H+LEIA +++VD + RL+ + +NLKR
Sbjct: 232 ASAQGCMTYLEPQNGDHILDLCAAPGGKTTHILEIAPKASVMAVDVDEQRLSRVYDNLKR 291
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L +KA + D + ++ FDRIL D PC+ +GV+RR+PD
Sbjct: 292 LGMKAEVKQGD----------------GRTPGEWCGDEQFDRILVDAPCSATGVIRRHPD 335
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR DI +L++ +IL+ +W LKPGG L++ TCS+ EE+ +Q F K ++
Sbjct: 336 IKWLRRDRDINELAQLQSEILDAVWPHLKPGGTLVYATCSVLPEENSQQIAAFLKRTSNA 395
Query: 298 I-----RLNSPG-QLLPTVNKKQDYDGFFYS 322
+ PG Q LP +D DGFFY+
Sbjct: 396 TLRTTGTPDKPGVQNLPGA---EDGDGFFYA 423
>gi|119943873|ref|YP_941553.1| sun protein [Psychromonas ingrahamii 37]
gi|119862477|gb|ABM01954.1| 16S rRNA m(5)C-967 methyltransferase [Psychromonas ingrahamii 37]
Length = 436
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 124/343 (36%), Positives = 187/343 (54%), Gaps = 38/343 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
M+N +LR FLR++ E K + +P W + +++ Y + I+ +++
Sbjct: 113 MVNGVLRNFLREQ-ESLVEKANKQPALVYCHPSWLVKRLQAAYGDELA-AQIMHNNNQQA 170
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLET--TIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N T Y LL +GL + + A++L P + K+P F G+ S+QD
Sbjct: 171 PMWLRVNALHHTRDQYQVLLNDAGLLSFSSEFNDNALRLEKPTDVYKLPGFTEGWVSVQD 230
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIK-LISVDNNLSRLNMISENLK 176
AAQLAA LD ++G VLDACSAPGGKT H+LE+ +IK +++VD + RL + ENL
Sbjct: 231 GAAQLAAHYLDAQAGDLVLDACSAPGGKTVHVLELQKNIKQMVAVDADAKRLLRVQENLD 290
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL LKA++I D S+ ++ + FDRIL D PC+ +GV+RR+P
Sbjct: 291 RLKLKASVIHGDASQPG----------------SWWHGELFDRILCDAPCSATGVIRRHP 334
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLRR++DI L IL+ LW LKPGG LL+ TCS+ +E++ Q F ++ +D
Sbjct: 335 DIRWLRRESDIAGLVSLQKNILHALWDKLKPGGILLYATCSILPDENDLQIQDFLESRQD 394
Query: 297 SIRL-------------NSPGQLLPTVNKKQDYDGFFYSLFQK 326
+ + N Q+LP + DGF+Y+ QK
Sbjct: 395 ASLIPLIVQDNLQNNIQNKGRQILPNEDA---MDGFYYAKLQK 434
>gi|606223|gb|AAA58086.1| we have one ORF, ECFMT has fmu and fmv [Escherichia coli str. K-12
substr. MG1655]
Length = 386
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 102/287 (35%), Positives = 178/287 (62%), Gaps = 27/287 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LRIN+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEE 282
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEE 381
>gi|289209431|ref|YP_003461497.1| sun protein [Thioalkalivibrio sp. K90mix]
gi|288945062|gb|ADC72761.1| sun protein [Thioalkalivibrio sp. K90mix]
Length = 451
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 113/343 (32%), Positives = 182/343 (53%), Gaps = 38/343 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR R++ + ++ + + P W + ++ ++P+ W+ +L+ +
Sbjct: 129 LINAVLRRAQREQ-DALEAAVREDPALRFAVPEWLLETIRASWPD--DWETLLEAATRPA 185
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+TLR+N +T+ + L +G L A+ L P ++++P F G S+QD
Sbjct: 186 PMTLRVNLSRTSREEALQALVAAGHPAQAHPQLEAALTLDEPADVAQLPGFAEGRLSVQD 245
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA--DIKLISVDNNLSRLNMISENLK 176
A+AQ AA LLD + G VLDAC+APGGKT HLLE A D++L ++D++ RL + ENL
Sbjct: 246 ASAQWAAVLLDPQPGERVLDACAAPGGKTGHLLERAGGDLQLTALDSDAERLVQVRENLD 305
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL A L +D++ + ++ + FD IL D+PC+ +GV+RR+P
Sbjct: 306 RLGFAAQLTAADVADPDA----------------WWDGRPFDAILLDVPCSATGVIRRHP 349
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI LRR +DI +L+ +IL W +L+PGG+LL+ TCSL EE++ F + D
Sbjct: 350 DIKTLRRADDIPRLAAEQARILEAAWGLLRPGGRLLYATCSLLSEENDAVVAGFLERMPD 409
Query: 297 SIRLNSPGQLLPTVNKK-------------QDYDGFFYSLFQK 326
+ L G P + + DGF+Y+L K
Sbjct: 410 ARALEPEGG--PPIAGAHARSVGWALPLGLEGGDGFYYALLTK 450
>gi|209693697|ref|YP_002261625.1| ribosomal RNA small subunit methyltransferase B [Aliivibrio
salmonicida LFI1238]
gi|208007648|emb|CAQ77758.1| ribosomal RNA small subunit methyltransferase B [Aliivibrio
salmonicida LFI1238]
Length = 444
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 112/335 (33%), Positives = 189/335 (56%), Gaps = 31/335 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR + R + E+ +K + + +P W + +K YP QW++I++ + K
Sbjct: 131 LINGVLRSYQRSQEEL-DAKSISHDSGKYGHPGWLLKMLKEAYPT--QWESIVEANNSKA 187
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + T Y LL+K + T A+ L + +P F G+ S+QD
Sbjct: 188 PMWLRVNSQHHTRDEYIALLEKEEIAVTPHSQATDALLLDKARDVFTLPGFEKGWVSVQD 247
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQL+ L + G +LD C+APGGKT H+LE + ++++D + +RL + ENL+R
Sbjct: 248 AAAQLSVEYLQPQDGELILDCCAAPGGKTAHILERTKNTNVVAIDCDETRLTRVYENLER 307
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
LNL+A +I D + +++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 308 LNLEAKVICGD----------------ARHPEEWWQGEQFDRILLDAPCSATGVIRRHPD 351
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR DIK L++ +I + +W LK GG +++ TCS+ +E+ +Q F + +++
Sbjct: 352 IKWLRRSEDIKALAELQSEIFDAMWLQLKSGGTMVYATCSITPQENGDQVKAFLERTENA 411
Query: 298 IRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQK 326
+++ PG Q+LP +++ DGF+Y++ QK
Sbjct: 412 SLVDNTDPAKPGRQILPG---EENMDGFYYAVLQK 443
>gi|254362113|ref|ZP_04978233.1| rRNA (cytosine-C(5)-)-methyltransferase [Mannheimia haemolytica
PHL213]
gi|261491771|ref|ZP_05988351.1| FMU protein [Mannheimia haemolytica serotype A2 str. BOVINE]
gi|261495480|ref|ZP_05991927.1| FMU protein [Mannheimia haemolytica serotype A2 str. OVINE]
gi|153093674|gb|EDN74629.1| rRNA (cytosine-C(5)-)-methyltransferase [Mannheimia haemolytica
PHL213]
gi|261308814|gb|EEY10070.1| FMU protein [Mannheimia haemolytica serotype A2 str. OVINE]
gi|261312610|gb|EEY13733.1| FMU protein [Mannheimia haemolytica serotype A2 str. BOVINE]
Length = 448
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 122/349 (34%), Positives = 186/349 (53%), Gaps = 46/349 (13%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
+ N +LR FLR++ EI + +W +P W +N++K YPN W+ I++ ++
Sbjct: 126 LTNGVLRRFLREQEEILAKV-----DKHWQTLHPEWLVNKLKKAYPN---WREIVEANNQ 177
Query: 59 KPPLTLRINQRKTTLISYNKLL---------KKSGLETTIIGPLAIKLHTPISISKIPKF 109
+PP+ +R+NQ+ Y L+ K S T + A+ L ++++++P F
Sbjct: 178 RPPMWIRVNQQHIKTNDYAALISELVEPEFAKNSENPTACVPKCALLLERAVNVNQLPHF 237
Query: 110 FNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRL 168
G+ ++QDA AQ +A LL +G VLDAC+APGGKT H+LE A K++++D SRL
Sbjct: 238 EQGWATVQDAHAQWSAELLGAENGETVLDACAAPGGKTTHILEKAPKAKVMALDIEESRL 297
Query: 169 NMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTG 228
+ + ENL RL A +I D SK + FDRIL D PC+
Sbjct: 298 SRVRENLVRLGQIAQVICGDASK---------------PEEWLEEGVLFDRILLDAPCSA 342
Query: 229 SGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAI 288
+GV+RR+PDI WLR++ DI +L+ +IL LW+ LKP G LL+ TCS+ +E+ EQ
Sbjct: 343 TGVIRRHPDIKWLRKEGDIAELATLQGEILKALWQRLKPNGILLYATCSVLPQENSEQIQ 402
Query: 289 IFSKNHKDSIRLNS--------PGQLLPTVNKKQDYDGFFYSLFQKRKE 329
F ++ ++ +L Q P N DGFFY+ QK E
Sbjct: 403 RFLQDTPNAKQLEIDFNGEKVLEKQFFPQPN---GGDGFFYAKLQKVAE 448
>gi|452744010|ref|ZP_21943862.1| 16S rRNA methyltransferase B [Mannheimia haemolytica serotype 6
str. H23]
gi|452087927|gb|EME04298.1| 16S rRNA methyltransferase B [Mannheimia haemolytica serotype 6
str. H23]
Length = 443
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 122/349 (34%), Positives = 186/349 (53%), Gaps = 46/349 (13%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
+ N +LR FLR++ EI + +W +P W +N++K YPN W+ I++ ++
Sbjct: 121 LTNGVLRRFLREQEEILAKV-----DKHWQTLHPEWLVNKLKKAYPN---WREIVEANNQ 172
Query: 59 KPPLTLRINQRKTTLISYNKLL---------KKSGLETTIIGPLAIKLHTPISISKIPKF 109
+PP+ +R+NQ+ Y L+ K S T + A+ L ++++++P F
Sbjct: 173 RPPMWIRVNQQHIKTNDYAALISELVEPEFAKNSENPTACVPKCALLLERAVNVNQLPHF 232
Query: 110 FNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRL 168
G+ ++QDA AQ +A LL +G VLDAC+APGGKT H+LE A K++++D SRL
Sbjct: 233 EQGWATVQDAHAQWSAELLGAENGETVLDACAAPGGKTTHILEKAPKAKVMALDIEESRL 292
Query: 169 NMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTG 228
+ + ENL RL A +I D SK + FDRIL D PC+
Sbjct: 293 SRVRENLVRLGQIAQVICGDASK---------------PEEWLEEGVLFDRILLDAPCSA 337
Query: 229 SGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAI 288
+GV+RR+PDI WLR++ DI +L+ +IL LW+ LKP G LL+ TCS+ +E+ EQ
Sbjct: 338 TGVIRRHPDIKWLRKEGDIAELATLQGEILKALWQRLKPNGILLYATCSVLPQENSEQIQ 397
Query: 289 IFSKNHKDSIRLNS--------PGQLLPTVNKKQDYDGFFYSLFQKRKE 329
F ++ ++ +L Q P N DGFFY+ QK E
Sbjct: 398 RFLQDTPNAKQLEIDFNGEKVLEKQFFPQPN---GGDGFFYAKLQKVAE 443
>gi|221135270|ref|ZP_03561573.1| 16S rRNA m(5)C 967 methyltransferase [Glaciecola sp. HTCC2999]
Length = 442
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 120/343 (34%), Positives = 182/343 (53%), Gaps = 40/343 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INAILR F+R E + + P W + Y Q ++D ++K
Sbjct: 119 LINAILRTFIR---EDVANTAPESLAAQAGMPNWIFKAINNHYAEHAQL--VIDESNQKA 173
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTI--IGPLAIKLHTPISISKIPKFFNGFCSIQD 118
PL LR+N + L+ G++T + P A++ +++ P + G+ ++QD
Sbjct: 174 PLWLRVNPAHISPEGMQTQLQAMGIDTELKNTHPDAVQCLKSGDVTQFPGYDKGWFAVQD 233
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLL----EIADIKLISVDNNLSRLNMISEN 174
AAQLAA LLD++ G VLD C+APGGKT H+L E+ + +++DN+ SRL + EN
Sbjct: 234 GAAQLAAQLLDVQPGHRVLDCCAAPGGKTAHILASQPELEEC--VAIDNDPSRLVRVEEN 291
Query: 175 LKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRR 234
L RL +ATLI + + +Y + FDRIL D PC+ +GV+RR
Sbjct: 292 LARLGHEATLICAAAEDVE----------------GWYGGEPFDRILLDAPCSATGVIRR 335
Query: 235 NPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH 294
+PDI WLR+ +DI L ++L +W++L+PGGKLL+ TCS+ EE+ +Q F H
Sbjct: 336 HPDIRWLRQASDIAPLVAIQAELLMQMWQILQPGGKLLYATCSILPEENSQQIQTFIAQH 395
Query: 295 KDSIRLNSPGQL--LPTVNKK---------QDYDGFFYSLFQK 326
+++ L P L L TVN + D DGF+Y+L QK
Sbjct: 396 PEAVVLPIPTSLSELTTVNDEFGLQVLPGDADMDGFYYTLLQK 438
>gi|251788002|ref|YP_003002723.1| 16S rRNA methyltransferase B [Dickeya zeae Ech1591]
gi|247536623|gb|ACT05244.1| sun protein [Dickeya zeae Ech1591]
Length = 431
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 191/332 (57%), Gaps = 34/332 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + N + +++P W + ++K YP+ QW+ I+D ++ P
Sbjct: 117 LINGVLRQFQRQQEELQQRLQNNT--ARYSHPDWLLQRLKKAYPD--QWEQIIDANNQHP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL---AIKLHTPISISKIPKFFNGFCSIQ 117
P+ LR+N+ + +Y LL++ G+E P AI+L TP ++S +P F G+ ++Q
Sbjct: 173 PMWLRVNRLHHSREAYLVLLQEKGIEAHP-HPFYTDAIRLITPCAVSGLPGFDQGWVTVQ 231
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
DA+AQ L ++ +LD C+APGGKT H+LE A ++++VD + RL + ENL+
Sbjct: 232 DASAQGCIHWLSPKNHEDILDLCAAPGGKTTHILEAAPQARVLAVDVDEQRLKRVKENLQ 291
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A + D + ++ FDRIL D PC+ +GV+RR+P
Sbjct: 292 RLRLHADVKCGD----------------GRTPEAWCADQCFDRILLDAPCSATGVIRRHP 335
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLRR +DI +L+ IL +W LK GG L++ TCS+ EE+ +Q F ++H D
Sbjct: 336 DIKWLRRDSDIAELASLQQAILEAIWPRLKNGGTLVYATCSVLPEENSQQIAAFLQHHPD 395
Query: 297 SIRLN-----SPG-QLLPTVNKKQDYDGFFYS 322
+I + SPG Q+LP +D DGFFY+
Sbjct: 396 AILADTGNTTSPGIQVLPM---PEDGDGFFYA 424
>gi|387887661|ref|YP_006317959.1| 16S rRNA m5C967 methyltransferase [Escherichia blattae DSM 4481]
gi|414595865|ref|ZP_11445472.1| ribosomal RNA small subunit methyltransferase B [Escherichia
blattae NBRC 105725]
gi|386922494|gb|AFJ45448.1| 16S rRNA m5C967 methyltransferase [Escherichia blattae DSM 4481]
gi|403193153|dbj|GAB83124.1| ribosomal RNA small subunit methyltransferase B [Escherichia
blattae NBRC 105725]
Length = 429
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 111/334 (33%), Positives = 189/334 (56%), Gaps = 38/334 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + E + +P W + +++ YP QW+ +++ +++P
Sbjct: 117 VINGVLRQFQRQQDALLAEA--DSQEIRFLHPGWLLKRLRAAYPT--QWEAVVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL---AIKLHTPISISKIPKFFNGFCSIQ 117
P+ LR+N++ T ++ LL +G P A++L +P+ + ++P F G+ ++Q
Sbjct: 173 PMWLRVNRQHHTRDAWLALLNDAG-HVAYPHPDYSDALRLESPLPVHQLPGFDQGWVTVQ 231
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
DA+AQ LLD ++G +LD C+APGGKT H+LE A +++VD + RL +SENL
Sbjct: 232 DASAQGCVDLLDPQNGEEILDLCAAPGGKTTHILEAAPGANVLAVDVDPQRLRRVSENLA 291
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRR 234
RL ++A + D R+ ++ ++ FDRIL D PC+ +GV+RR
Sbjct: 292 RLQMQAEVKCGD------------------GRYPQQWCGDRLFDRILLDAPCSATGVIRR 333
Query: 235 NPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH 294
+PDI WLRR DI L++ +IL+ +W LK GG L++ TCS+ +E+ +Q F H
Sbjct: 334 HPDIKWLRRDTDIADLAQLQGEILDAIWPRLKTGGTLVYATCSVLPDENSQQIAAFLARH 393
Query: 295 KDSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
++ + + PG Q LP ++ DGFFY+
Sbjct: 394 PEATLVETGTPEQPGRQNLPAA---EEGDGFFYA 424
>gi|386077676|ref|YP_005991201.1| ribosomal RNA small subunit methyltransferase B RsmB [Pantoea
ananatis PA13]
gi|354986857|gb|AER30981.1| ribosomal RNA small subunit methyltransferase B RsmB [Pantoea
ananatis PA13]
Length = 433
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 110/338 (32%), Positives = 189/338 (55%), Gaps = 36/338 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + S +P W +N+++ +P QW+ I++ +++P
Sbjct: 117 LINGVLRQFQRQQEALLASIQDGPQRHL--HPGWLLNRLQQAWPE--QWQQIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N++ + S+ L + P A++L P ++ +P F G+ ++QD
Sbjct: 173 PMWLRVNRQHHSRDSWLARLTAEEKSAAVAQDVPEALRLAAPAPVTLLPGFEQGWFTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
+AQ A LL+ ++G +LD C+APGGKT H+LEIA + ++++VD + RL ++ENL R
Sbjct: 233 LSAQRCALLLEPKNGEQILDLCAAPGGKTTHILEIAPEAQVLAVDVDAQRLKRVNENLTR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L + A + K+ + R ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMTAEV------------------KQGDGRTPQQWCDQRQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L+ +IL+ W +LKPGG +++ TCS+ +E++ Q F + H
Sbjct: 335 PDIKWLRRDRDIAELAALQREILDATWPLLKPGGTMIYATCSVLPDENQRQISEFIERHA 394
Query: 296 DSIRLNSPG------QLLPTVNKKQDYDGFFYSLFQKR 327
D+ ++ G Q+ P + + DGFFY+ KR
Sbjct: 395 DAEAVSLSGAPLNGWQVFP---EAEGGDGFFYAKLVKR 429
>gi|291619144|ref|YP_003521886.1| RsmB [Pantoea ananatis LMG 20103]
gi|291154174|gb|ADD78758.1| RsmB [Pantoea ananatis LMG 20103]
Length = 433
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 110/338 (32%), Positives = 189/338 (55%), Gaps = 36/338 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + S +P W +N+++ +P QW+ I++ +++P
Sbjct: 117 LINGVLRQFQRQQEALLASIQDGPQRHL--HPGWLLNRLQQAWPE--QWQQIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N++ + S+ L + P A++L P ++ +P F G+ ++QD
Sbjct: 173 PMWLRVNRQHHSRDSWLARLTAEEKSAAVAQDVPEALRLTAPAPVTLLPGFEQGWFTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
+AQ A LL+ ++G +LD C+APGGKT H+LEIA + ++++VD + RL ++ENL R
Sbjct: 233 LSAQRCALLLEPKNGEQILDLCAAPGGKTTHILEIAPEAQVLAVDVDAQRLKRVNENLTR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L + A + K+ + R ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMTAEV------------------KQGDGRTPQQWCDQRQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L+ +IL+ W +LKPGG +++ TCS+ +E++ Q F + H
Sbjct: 335 PDIKWLRRDRDIAELAALQREILDATWPLLKPGGTMIYATCSVLPDENQRQISEFIERHA 394
Query: 296 DSIRLNSPG------QLLPTVNKKQDYDGFFYSLFQKR 327
D+ ++ G Q+ P + + DGFFY+ KR
Sbjct: 395 DAEAVSLSGAPLNGWQVFP---EAEGGDGFFYAKLVKR 429
>gi|336314013|ref|ZP_08568935.1| ribosomal RNA small subunit methyltransferase RsmB [Rheinheimera
sp. A13L]
gi|335881952|gb|EGM79829.1| ribosomal RNA small subunit methyltransferase RsmB [Rheinheimera
sp. A13L]
Length = 432
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 124/343 (36%), Positives = 193/343 (56%), Gaps = 42/343 (12%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR +++K E+F + + Y N+P W I Q++ YP+ W+ ILD +K
Sbjct: 116 LINAVLRS-VQRKPEVFDFQDSPLPVQY-NHPGWIITQLQQAYPD--NWQQILDENQQKA 171
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT---IIGPLAIKLHTPISISKIPKFFNGFCSIQ 117
PL LR+NQ +TT +Y L G+ + P A+ L ++ +P + +G+ S+Q
Sbjct: 172 PLWLRVNQLRTTPEAYLAALAAEGIAASQPFAYLPCALLLEQASDVTLLPGYADGWFSVQ 231
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
D AAQ AA L R+ VLDAC APGGKTCH+LE+A + ++++D + RL+ + +NL
Sbjct: 232 DGAAQHAAYFLGARNKDSVLDACCAPGGKTCHILELAPEADVLALDKDPRRLDRVYDNLD 291
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A ++ +D + + + + FDRIL D+PC+ +GV+RR+P
Sbjct: 292 RLGLDARVMAADAADPDDWAGF----------------QTFDRILLDVPCSATGVIRRHP 335
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR+K DI L + +IL N+W +LKP +LL+ TCS+ EE+++Q F +H D
Sbjct: 336 DIRWLRKKTDIAPLVELQQQILRNIWPLLKPDAELLYATCSVLPEENQQQIEAFLADHAD 395
Query: 297 SIRLNSPGQLLPTVNK-----------KQDYDGFFYSLFQKRK 328
+ QL+P + +Q DGFFY+ +K K
Sbjct: 396 A-------QLIPLADSHPQLHWQILPGQQQMDGFFYAKLRKTK 431
>gi|119475266|ref|ZP_01615619.1| sun protein [marine gamma proteobacterium HTCC2143]
gi|119451469|gb|EAW32702.1| sun protein [marine gamma proteobacterium HTCC2143]
Length = 434
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 115/340 (33%), Positives = 192/340 (56%), Gaps = 38/340 (11%)
Query: 2 INAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
+N +LR++ R + ++ + E+ ++P W +++ +P + +I V ++ PP
Sbjct: 118 VNGVLRQWQRNEQDLLTK--LTVAEAQ-SHPQWLHDELVKAWP--AEASSIESVNNQHPP 172
Query: 62 LTLRINQRKTTLISYNKLLKKSGLET--TIIGPLAIKLHTPISISKIPKFFNGFCSIQDA 119
+ LR+N + ++ Y + L G++ I+L +S+ ++P F G+ S+QD
Sbjct: 173 MCLRVNHQHSSTADYLQQLAAHGIDAGRCDFADQGIRLTNAVSVEQLPNFSAGWVSVQDE 232
Query: 120 AAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADI--KLISVDNNLSRLNMISENLKR 177
A QL+A L+ + G VLDAC APGGKTCH+LE+ +LI++D + RL + +NL+R
Sbjct: 233 APQLSAALMALAPGQRVLDACCAPGGKTCHMLELQPQLKQLIALDVDHQRLQKVEQNLER 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L LKA+L D S+ ++ N+ FDRIL D PC+ +GV+RRNPD
Sbjct: 293 LQLKASLTHGDASE----------------PLTWWDNQPFDRILLDAPCSATGVIRRNPD 336
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I R+ +DI +L+K KILN LW LKP G+L++ TCS+ +E+E F + KD+
Sbjct: 337 IKLHRQHSDIAQLAKLQRKILNALWLTLKPNGRLVYATCSVLPDENEIIVGDFCEQQKDA 396
Query: 298 --IRLNSP--------GQLLPTVNKKQDYDGFFYSLFQKR 327
I +++P QLLP + + +DGF+Y++ +K+
Sbjct: 397 KHIVIDAPWGIARPYGRQLLP---QNEGHDGFYYAVIEKK 433
>gi|213027901|ref|ZP_03342348.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhi str. 404ty]
Length = 289
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 106/302 (35%), Positives = 178/302 (58%), Gaps = 32/302 (10%)
Query: 31 YPIWWINQVKITYPNFFQWKNILDVGHKKPPLTLRINQRKTTLISYNKLLKKSGLETTII 90
+P W + +++ YP QW+ I++ +++PP+ LR+N+ T + LL+ +G++
Sbjct: 5 HPGWLVKRLQNAYPT--QWQRIIEANNQRPPMWLRVNRTHHTRDGWLGLLEDAGMKGYPH 62
Query: 91 G--PLAIKLHTPISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTC 148
P A++L TP + +P F G+ ++QDA+AQ A L ++G ++LD C+APGGKT
Sbjct: 63 PDYPDAVRLETPAPVHALPGFAEGWVTVQDASAQGCAVFLAPQNGEHILDLCAAPGGKTT 122
Query: 149 HLLEIA-DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNN 207
H+LE+A + +++VD + RL+ + +NLKRL +KAT+ K+ +
Sbjct: 123 HILEVAPEADVLAVDIDEQRLSRVYDNLKRLGMKATV------------------KQGDG 164
Query: 208 RF--RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKML 265
R+ ++ + FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W L
Sbjct: 165 RYPAQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPRL 224
Query: 266 KPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSI-----RLNSPGQLLPTVNKKQDYDGFF 320
KPGG L++ TCS+ EE+ +Q F + D+ + PGQ + ++ DGFF
Sbjct: 225 KPGGTLVYATCSVLPEENRDQIKAFLQRTPDAALSETGTPDQPGQQ--NLPGGEEGDGFF 282
Query: 321 YS 322
Y+
Sbjct: 283 YA 284
>gi|335424664|ref|ZP_08553668.1| 16S rRNA methyltransferase B [Salinisphaera shabanensis E1L3A]
gi|334888095|gb|EGM26401.1| 16S rRNA methyltransferase B [Salinisphaera shabanensis E1L3A]
Length = 443
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 113/346 (32%), Positives = 184/346 (53%), Gaps = 51/346 (14%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
M+NAILR R S++ + Y YP W + ++ + + W +L G++
Sbjct: 126 MVNAILRGHQRDAAAADSSELA-VGVRY-GYPDWVVRMIEADWGSL--WPAVLAAGNRPA 181
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR N R+ + + + L ++G+ + + A+ L + IS +P F +G SIQD
Sbjct: 182 PMHLRANARQCSRHTAMQRLAEAGIASQAVRVCDSALTLDSAISARDLPGFASGEISIQD 241
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRL 178
A AQLAA L+ ++G +VLDAC+APG K+ HLLE ADI L+++D + +RL ++E L+R+
Sbjct: 242 AGAQLAAGLVAAQAGDHVLDACAAPGNKSAHLLERADIDLLALDIDATRLETLNETLQRV 301
Query: 179 NLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDI 238
A + ++D I ++ + FDRIL D PC+G+GV+RR+PDI
Sbjct: 302 GTTARVQVADAGDIE----------------HWWDGRAFDRILLDAPCSGTGVIRRHPDI 345
Query: 239 PWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEE--------------SE 284
WLRR +DI +K +L+ LW+ L PGG+L++ TCS+ E +
Sbjct: 346 KWLRRPDDIAAAAKRQNALLDGLWRTLAPGGRLVYATCSILRAEGVDVIDAFLARTDDAR 405
Query: 285 EQAI----IFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 326
EQ I F++ + I +PG +DGF+Y++ ++
Sbjct: 406 EQVIDAHWGFAERYGRRI---APGM--------HGFDGFYYAVLER 440
>gi|375335508|ref|ZP_09776852.1| sun protein [Succinivibrionaceae bacterium WG-1]
Length = 455
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 127/343 (37%), Positives = 203/343 (59%), Gaps = 36/343 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NAIL +F+ K E F K+ +E+ +++P W I ++K +YP + + IL+ + P
Sbjct: 134 LVNAILHKFIEKYEE-FTPKLDKSYETKYSFPQWLIGKLKTSYPQ--ELRTILENSNSHP 190
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ +R+N+ K T+ Y LLKK+ +E++ I P A+ L+ P+S+ K+P F +G +QD
Sbjct: 191 PMWIRVNKNKYTISEYQSLLKKNNIESSYIAEFPDALLLNAPVSVEKLPHFDDGASFVQD 250
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IK-LISVDNNLSRLNMISENLK 176
AAAQ AA LL + VLD C APGGKT H+LE+ + IK L+++D SR+ + NL
Sbjct: 251 AAAQQAAALLSLEKDDIVLDCCCAPGGKTTHILELCNNIKDLVAIDAQESRIPRVISNLT 310
Query: 177 RLNL--KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRR 234
R+ + K ++ D S + K + ++ Y ++IL D PC+ GV+RR
Sbjct: 311 RMKIQNKVKVVCYDASA----------DPKEWSPYQTY-----NKILLDAPCSALGVIRR 355
Query: 235 NPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH 294
+PDI WLR + +IK + KILNN+W +L PGG L++ TCS+ EE+++Q F K H
Sbjct: 356 HPDIKWLRTEAEIKNICNLQQKILNNVWNLLSPGGILVYATCSILPEENKKQVSEFLKTH 415
Query: 295 KD--------SIRLNSPG-QLLPTVNKKQDYDGFFYSLFQKRK 328
KD + +++PG Q LP ++ + DGF+Y+ K+K
Sbjct: 416 KDAELIPIVATENIDNPGLQRLPGID---NTDGFYYARITKKK 455
>gi|238898791|ref|YP_002924473.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Candidatus
Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
gi|229466551|gb|ACQ68325.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Candidatus
Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
Length = 429
Score = 201 bits (510), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 117/333 (35%), Positives = 190/333 (57%), Gaps = 27/333 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INAILREF R+K + + + Y +P W + ++K YP QW +IL +++P
Sbjct: 117 LINAILREFERRKESLLQK--VEAQDPYL-HPQWLLQRIKTAYPE--QWPSILRANNERP 171
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTI--IGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ +R+N + Y L+KSG++ I A+++ P S+ ++P F G+ ++QD
Sbjct: 172 PMWIRVNVLHHSREKYLTELEKSGIKAKAHSICLDAVQILPPCSVKELPGFDLGWATVQD 231
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
+AQ LLD ++ Y+LD C+APG KT H+LE A +++VD + RL I ENL+R
Sbjct: 232 VSAQRCIDLLDPQNDDYILDLCAAPGVKTTHILERAPSADVLAVDIDAKRLERIKENLQR 291
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L+L A L ++D ++Y+ K FD+IL D+PC+ +G++RR+PD
Sbjct: 292 LHLSARLKVADALVPE----------------QWYEGKMFDKILLDVPCSATGIIRRHPD 335
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH--K 295
I WLRR +DI L++ +I+ +W L+ GG LL+ TCS+ EE+++Q F K+
Sbjct: 336 IKWLRRDSDIAALAQLQSEIIKAVWPTLRQGGMLLYSTCSILPEENQQQITEFLKHQLNA 395
Query: 296 DSIRLNSPGQL-LPTVNKKQDYDGFFYSLFQKR 327
+SI + + L + + + DGFFY+ KR
Sbjct: 396 ESITIQDEAVIGLQNLPQTDEGDGFFYAKITKR 428
>gi|407893270|ref|ZP_11152300.1| ribosomal RNA small subunit methyltransferase B [Diplorickettsia
massiliensis 20B]
Length = 442
Score = 200 bits (509), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 115/337 (34%), Positives = 190/337 (56%), Gaps = 35/337 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INAILR F R++ + K K E + +P W I++++ +P W IL+ ++ P
Sbjct: 121 LINAILRSFQRQQASLLK-KCSATDEMRYAHPSWVIDRLQHDWPT--HWSAILNANNEVP 177
Query: 61 PLTLRINQRKTTLISYNKLLKKSGL--ETTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
PL+LR+N T++ + ++ G+ + + + + I L P + +P F G S+QD
Sbjct: 178 PLSLRVNTLATSVEAVLAQFQEKGIAAQRSALSLVGILLDKPHRVFDLPGFCEGKISVQD 237
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKL---ISVDNNLSRLNMISENL 175
AAQLAAPLL++ VLDAC+APGGK H+LE + ++L ++++++ +RL + ENL
Sbjct: 238 TAAQLAAPLLELAPQHTVLDACTAPGGKLAHILE-SQMQLKTCVAIESDAARLQKVKENL 296
Query: 176 KRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRN 235
+RL+L K ++ L+ + + ++ + FDRIL D PC+GSGV+RR+
Sbjct: 297 ERLHL---------DKQRVRLLHTSVQAFAQD----WQGEGFDRILLDAPCSGSGVIRRH 343
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI LRR+ D+ L++ ++L LW +LKP G L++ TCS++ EE+ E F H
Sbjct: 344 PDIKRLRREQDLATLAQQQVELLTALWALLKPNGVLVYATCSVFKEENSEVIQTFLAQHP 403
Query: 296 DS----------IRLNSPGQLLPTVNKKQDYDGFFYS 322
+ + + QL P +KQ DGF+Y+
Sbjct: 404 TANVLPIAENWGVACSVGRQLFP---QKQGSDGFYYA 437
>gi|389783169|ref|ZP_10194663.1| ribosomal RNA small subunit methyltransferase RsmB [Rhodanobacter
spathiphylli B39]
gi|388435107|gb|EIL92025.1| ribosomal RNA small subunit methyltransferase RsmB [Rhodanobacter
spathiphylli B39]
Length = 433
Score = 200 bits (509), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 109/339 (32%), Positives = 187/339 (55%), Gaps = 34/339 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR + R++ + +++ ++ +P W + ++ +P Q + ++ + +P
Sbjct: 116 LVNAVLRRWQRERSSLL-ARLDAKAQTRHAHPQWLADALQRDWPA--QAEAVMAADNGEP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPIS--ISKIPKFFNGFCSIQD 118
PL LR+N++++ + L+ +G E L L P S ++++P F +G ++QD
Sbjct: 173 PLMLRVNRQRSERDALIGQLRAAGYEAAAHPWLTDALVLPHSGDVTRMPGFEDGHFAVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRL 178
AAQ+AA L D+R G+ VLDAC+APGGK CHLLE ADI L +++ + R I +NL RL
Sbjct: 233 GAAQVAADLADLRDGLRVLDACAAPGGKACHLLERADIDLTALEFDAPRAERIRQNLMRL 292
Query: 179 NLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDI 238
L A L++ D ++K + FDRIL D PC+ +GV+RR PD+
Sbjct: 293 RLDAKLVIGDAGAPKA----------------WWKGQPFDRILIDAPCSATGVLRRRPDV 336
Query: 239 PWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEE--QAIIFSKNHKD 296
RR++DI + +IL+ LW +L PGG+L+++TCS+ E+E ++ ++ +
Sbjct: 337 RLHRRESDIAAMHAQQRRILSALWPLLAPGGRLVYITCSVLRAENEAIVGELLATRADAE 396
Query: 297 SIRLNSPG--------QLLPTVNKKQDYDGFFYSLFQKR 327
+ + P Q+LP D DG +Y++ QKR
Sbjct: 397 VVPFSLPAGQPAATGWQILPG---DGDLDGMYYAVLQKR 432
>gi|386017393|ref|YP_005935691.1| ribosomal RNA small subunit methyltransferase B RsmB [Pantoea
ananatis AJ13355]
gi|327395473|dbj|BAK12895.1| ribosomal RNA small subunit methyltransferase B RsmB [Pantoea
ananatis AJ13355]
Length = 433
Score = 200 bits (508), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 112/339 (33%), Positives = 192/339 (56%), Gaps = 38/339 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + S +P W +N+++ +P QW+ I++ +++P
Sbjct: 117 LINGVLRQFQRQQEALLASIQDGPQRHL--HPGWLLNRLQQAWPE--QWQQIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLL---KKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQ 117
P+ LR+N++ + S+ L +KS + P A++L P ++ +P F G+ ++Q
Sbjct: 173 PMWLRVNRQHHSRDSWLARLIAEEKSAAVAQDV-PEALRLTAPAPVTLLPGFEQGWFTVQ 231
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
D +AQ A LL+ ++G +LD C+APGGKT H+LEIA + ++++VD + RL ++ENL
Sbjct: 232 DLSAQRCALLLEPKNGEQILDLCAAPGGKTTHILEIAPEAQVLAVDVDAQRLKRVNENLT 291
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRR 234
RL + A + K+ + R ++ + FDRIL D PC+ +GV+RR
Sbjct: 292 RLGMTAEV------------------KQGDGRTPQQWCDQRQFDRILLDAPCSATGVIRR 333
Query: 235 NPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH 294
+PDI WLRR DI +L+ +IL+ W +LKPGG +++ TCS+ +E++ Q F + H
Sbjct: 334 HPDIKWLRRDRDIAELAALQREILDATWPLLKPGGTMIYATCSVLPDENQRQISEFIERH 393
Query: 295 KDSIRLNSPG------QLLPTVNKKQDYDGFFYSLFQKR 327
D+ ++ G Q+ P + + DGFFY+ KR
Sbjct: 394 ADAEAVSLSGAPLNGWQVFP---EAEGGDGFFYAKLVKR 429
>gi|386289392|ref|ZP_10066522.1| 16S rRNA methyltransferase B [gamma proteobacterium BDW918]
gi|385277455|gb|EIF41437.1| 16S rRNA methyltransferase B [gamma proteobacterium BDW918]
Length = 431
Score = 200 bits (508), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 120/343 (34%), Positives = 181/343 (52%), Gaps = 42/343 (12%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
M NAILR R+K +FK ++ P W + +P+ Q I+ + P
Sbjct: 114 MTNAILRRCQREKDTLFKGLKPAADVAF---PAWLYQALAQAWPD--QLTEIISASNAHP 168
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTI----IGPLAIKLHTPISISKIPKFFNGFCSI 116
P LR+N+++ +Y LL+ + L+ T P I+L + K+P FF+G S+
Sbjct: 169 PFCLRLNRQQQERDAY--LLELAALDMTASPCEFAPYGIRLEQACGVDKLPGFFDGHISV 226
Query: 117 QDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEI--ADIKLISVDNNLSRLNMISEN 174
QD AAQL LLD+++G VLDAC+APGGKT +LE A +++++D + RL+ ISEN
Sbjct: 227 QDEAAQLCTQLLDLQAGQRVLDACAAPGGKTGAILEAQPALREVLALDIDEQRLSRISEN 286
Query: 175 LKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRR 234
L RL L ATL+ +D + ++ ++ +FDRIL D PC+ GV+RR
Sbjct: 287 LARLQLGATLVAADAADLD----------------SWWDGSHFDRILLDAPCSAVGVIRR 330
Query: 235 NPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH 294
NPDI R +DI L + +L++LW+ L PGG ++ TCSL E+EEQ F
Sbjct: 331 NPDIKLNRMVSDIAPLCRLQASLLDSLWQCLSPGGLFVYATCSLLPAENEEQISAFLSRE 390
Query: 295 KDS----------IRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 327
+ + + QL P + Q +DGFFY+L +K+
Sbjct: 391 PSAELVPLDVSWGVDRSGCRQLFP---QDQGHDGFFYALLRKK 430
>gi|292900857|ref|YP_003540226.1| ribosomal RNA small subunit methyltransferase B [Erwinia amylovora
ATCC 49946]
gi|428786796|ref|ZP_19004273.1| Ribosomal RNA small subunit methyltransferase B [Erwinia amylovora
ACW56400]
gi|291200705|emb|CBJ47838.1| ribosomal RNA small subunit methyltransferase B [Erwinia amylovora
ATCC 49946]
gi|426274637|gb|EKV52378.1| Ribosomal RNA small subunit methyltransferase B [Erwinia amylovora
ACW56400]
Length = 429
Score = 200 bits (508), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 116/337 (34%), Positives = 192/337 (56%), Gaps = 34/337 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + N + + +P W + ++K +P QW+ I+ +++P
Sbjct: 117 LINGVLRQFQRQQ--DQLMQQMNDGDQQYLHPKWLLERLKRAWPE--QWQQIVAANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL---AIKLHTPISISKIPKFFNGFCSIQ 117
P+ LR+N++ + ++ LL++SG + PL A++L +P ++ ++P F G+ ++Q
Sbjct: 173 PMWLRVNRQYHSRDAWLALLEESG-KQAFSHPLHCDALRLESPCTVHQLPGFDQGWVTVQ 231
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
DA+AQ LL ++G +LD C+APGGKT H+LE A +++VD + RL I+ENL+
Sbjct: 232 DASAQGCVALLAPQNGEQILDLCAAPGGKTTHILEAAPQANVLAVDVDAQRLTRITENLQ 291
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RLN++A + L D + + FDRIL D PC+ +GV+RR+P
Sbjct: 292 RLNMQAEVKLGD----------------GRTPAAWCGDTLFDRILLDAPCSATGVIRRHP 335
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLRR DI +L+ +IL+ +W LK GG +L+ TCS+ EE+ Q F + H +
Sbjct: 336 DIKWLRRDRDIAELAALQQQILDAVWPHLKSGGTMLYATCSVLPEENHLQISQFLQRHAN 395
Query: 297 SI-----RLNSPG-QLLPTVNKKQDYDGFFYSLFQKR 327
+ L PG Q+LP V+ DGF+Y+ K+
Sbjct: 396 AALVATGDLTQPGIQVLPQVDGG---DGFYYAKLVKQ 429
>gi|378765423|ref|YP_005193882.1| ribosomal RNA small subunit methyltransferase B [Pantoea ananatis
LMG 5342]
gi|365184895|emb|CCF07845.1| ribosomal RNA small subunit methyltransferase B [Pantoea ananatis
LMG 5342]
Length = 433
Score = 200 bits (508), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 110/338 (32%), Positives = 188/338 (55%), Gaps = 36/338 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + S +P W +N+++ +P QW+ I++ +++P
Sbjct: 117 LINGVLRQFQRQQEALLASIQDGPQRHL--HPGWLLNRLQQAWPE--QWQQIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N++ + S+ L + P A++L P ++ +P F G+ ++QD
Sbjct: 173 PMWLRVNRQHHSRDSWLARLTAEEKSAAVAQDVPEALRLTAPAPVTLLPGFEQGWFTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
+AQ A LL+ ++G +LD C+APGGKT H+LEIA ++++VD + RL ++ENL R
Sbjct: 233 LSAQRCALLLEPKNGEQILDLCAAPGGKTTHILEIAPQAQVLAVDVDAQRLKRVNENLTR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L + A + K+ + R ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMTAEV------------------KQGDGRTPQQWCDQRQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L+ +IL+ W +LKPGG +++ TCS+ +E++ Q F + H
Sbjct: 335 PDIKWLRRDRDIAELAALQREILDATWPLLKPGGTMIYATCSVLPDENQRQISEFIERHA 394
Query: 296 DSIRLNSPG------QLLPTVNKKQDYDGFFYSLFQKR 327
D+ ++ G Q+ P + + DGFFY+ KR
Sbjct: 395 DAEAVSLSGAPLNGWQVFP---EAEGGDGFFYAKLVKR 429
>gi|333906416|ref|YP_004480002.1| sun protein [Marinomonas posidonica IVIA-Po-181]
gi|333476422|gb|AEF53083.1| sun protein [Marinomonas posidonica IVIA-Po-181]
Length = 459
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 125/358 (34%), Positives = 190/358 (53%), Gaps = 54/358 (15%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R++ EI + M + +N+P W + + K +PN F+ I++ + P
Sbjct: 122 LINAVLRRYQREELEIIDNLM-QMPSVEFNHPKWLVKRYKKHWPNAFE--QIIEASNVHP 178
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ +R+N + + +Y L + G+ETT G ++ L +S++++P F +G CS+QD
Sbjct: 179 PMCIRVNLDRVSRETYQLTLSELGIETTQGGLSDASLYLSKAVSVNQLPGFDDGLCSVQD 238
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-------------IKLISVDNNL 165
AAQL+A +L+ +LDAC+APGGKT HLLE L +++
Sbjct: 239 EAAQLSAQILNPTMSERILDACAAPGGKTGHLLECLSRSQSEEQKSNSVLPSLTAIELEA 298
Query: 166 SRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLP 225
RL I NL RL A L+ +D S+ ++ N+ +D+IL D+P
Sbjct: 299 WRLEKIESNLDRLGYCAELMCADASQTE----------------EWWDNQAYDKILLDVP 342
Query: 226 CTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEE 285
C+ +GV+RRNPDI R+ DI++L +ILN +W LKP G LL+ TCSL EE+E+
Sbjct: 343 CSATGVIRRNPDIKLNRKPADIEELIVIQKQILNKVWATLKPNGYLLYATCSLMPEENEQ 402
Query: 286 QAIIFSKNHKDS--IRLN--------------SPG-QLLPTVNKKQDYDGFFYSLFQK 326
Q F D+ I+LN S G QL PT+N DGF+Y L QK
Sbjct: 403 QIAAFLSEQSDASEIKLNHLNANLSLNWGLEVSHGKQLFPTLNGN---DGFYYCLLQK 457
>gi|312173998|emb|CBX82251.1| Ribosomal RNA small subunit methyltransferase B [Erwinia amylovora
ATCC BAA-2158]
Length = 429
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 116/337 (34%), Positives = 192/337 (56%), Gaps = 34/337 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + N + + +P W + ++K +P QW+ I+ +++P
Sbjct: 117 LINGVLRQFQRQQ--DQLMQQMNDGDQQYLHPKWLLERLKRAWPE--QWQQIVAANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL---AIKLHTPISISKIPKFFNGFCSIQ 117
P+ LR+N++ + ++ LL++SG + PL A++L +P ++ ++P F G+ ++Q
Sbjct: 173 PMWLRVNRQYHSRDAWLALLEESG-KQAFSHPLHCDALRLESPCTVHQLPGFDQGWVTVQ 231
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
DA+AQ LL ++G +LD C+APGGKT H+LE A +++VD + RL I+ENL+
Sbjct: 232 DASAQGCVALLAPQNGEQILDLCAAPGGKTTHILEAAPQANVLAVDVDAQRLTRITENLQ 291
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RLN++A + L D + + FDRIL D PC+ +GV+RR+P
Sbjct: 292 RLNMQAEVKLGD----------------GRTPAAWCGDTLFDRILLDAPCSATGVIRRHP 335
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLRR DI +L+ +IL+ +W LK GG +L+ TCS+ EE+ Q F + H +
Sbjct: 336 DIKWLRRDRDIAELAALQQQILDAVWPHLKSGGTMLYATCSVLPEENHLQISQFLQRHAN 395
Query: 297 SI-----RLNSPG-QLLPTVNKKQDYDGFFYSLFQKR 327
+ L PG Q+LP V+ DGF+Y+ K+
Sbjct: 396 AALVATGDLTQPGIQVLPQVDGG---DGFYYAKLVKQ 429
>gi|292489815|ref|YP_003532705.1| ribosomal RNA small subunit methyltransferase B [Erwinia amylovora
CFBP1430]
gi|291555252|emb|CBA23523.1| Ribosomal RNA small subunit methyltransferase B [Erwinia amylovora
CFBP1430]
Length = 456
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 116/337 (34%), Positives = 192/337 (56%), Gaps = 34/337 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + N + + +P W + ++K +P QW+ I+ +++P
Sbjct: 144 LINGVLRQFQRQQ--DQLMQQMNDGDQQYLHPKWLLERLKRAWPE--QWQQIVAANNQRP 199
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL---AIKLHTPISISKIPKFFNGFCSIQ 117
P+ LR+N++ + ++ LL++SG + PL A++L +P ++ ++P F G+ ++Q
Sbjct: 200 PMWLRVNRQYHSRDAWLALLEESG-KQAFSHPLHCDALRLESPCTVHQLPGFDQGWVTVQ 258
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
DA+AQ LL ++G +LD C+APGGKT H+LE A +++VD + RL I+ENL+
Sbjct: 259 DASAQGCVALLAPQNGEQILDLCAAPGGKTTHILEAAPQANVLAVDVDAQRLTRITENLQ 318
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RLN++A + L D + + FDRIL D PC+ +GV+RR+P
Sbjct: 319 RLNMQAEVKLGD----------------GRTPAAWCGDTLFDRILLDAPCSATGVIRRHP 362
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLRR DI +L+ +IL+ +W LK GG +L+ TCS+ EE+ Q F + H +
Sbjct: 363 DIKWLRRDRDIAELAALQQQILDAVWPHLKSGGTMLYATCSVLPEENHLQISQFLQRHAN 422
Query: 297 SI-----RLNSPG-QLLPTVNKKQDYDGFFYSLFQKR 327
+ L PG Q+LP V+ DGF+Y+ K+
Sbjct: 423 AALVATGDLTQPGIQVLPQVDGG---DGFYYAKLVKQ 456
>gi|269103777|ref|ZP_06156474.1| ribosomal RNA small subunit methyltransferase B [Photobacterium
damselae subsp. damselae CIP 102761]
gi|268163675|gb|EEZ42171.1| ribosomal RNA small subunit methyltransferase B [Photobacterium
damselae subsp. damselae CIP 102761]
Length = 308
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/329 (33%), Positives = 181/329 (55%), Gaps = 30/329 (9%)
Query: 6 LREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPPLTLR 65
+R + R++ E+ + + Y +P W + +K YPN I + K P+ LR
Sbjct: 1 MRNYQRQQQELDAQAVSHDAGKY-GHPSWLLKLLKQAYPNDV--DAICAANNTKAPMWLR 57
Query: 66 INQRKTTLISYNKLLKKSGLETTI--IGPLAIKLHTPISISKIPKFFNGFCSIQDAAAQL 123
+N++ Y KLL G+ T + A++L +P + K+P F G+ S+QDAAAQL
Sbjct: 58 VNRQHHNRDEYRKLLDAEGIATELHPQAGDALRLLSPCDVYKLPGFEQGWVSVQDAAAQL 117
Query: 124 AAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKRLNLKA 182
A L ++G +LD C+APGGKT H+LE + +++++D + RL + +NL+RLNL+A
Sbjct: 118 AIEYLQPQAGELILDCCAAPGGKTAHILEHVPSAQVVAIDCDEHRLARVHDNLQRLNLQA 177
Query: 183 TLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLR 242
++ +D +++ FDRIL D PC+ +GV+RR+PDI WLR
Sbjct: 178 KVLCADARYPE----------------KWWDGDKFDRILLDAPCSATGVIRRHPDIKWLR 221
Query: 243 RKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS 302
R DI L++ +I + +W LK GG L++ TCS+ +E+ +Q F D+ + S
Sbjct: 222 RGEDIAALAQLQAEIFDAMWLQLKSGGTLVYATCSITPQENRDQVSAFLTRTADATLVGS 281
Query: 303 ----PG-QLLPTVNKKQDYDGFFYSLFQK 326
PG Q+LP +++ DGF+Y++ QK
Sbjct: 282 EATNPGRQILPG---EENMDGFYYAVLQK 307
>gi|377555715|ref|ZP_09785443.1| sun protein [endosymbiont of Bathymodiolus sp.]
Length = 413
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 189/333 (56%), Gaps = 39/333 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NAILR+ R K +I ++++++P W + ++K TYP+ F+ I + +
Sbjct: 109 LVNAILRQIQRDKDKILT-------QTHYSHPTWLLKKIKQTYPDHFE--QIFTQNNTQA 159
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
P+TLR++ + + + L + L+ + P A L+ I + + F G C +QDA+
Sbjct: 160 PMTLRLHPQH----NIDTYLDATHLK---VAPQARVLNQAIDVYHLQDFDKGSCFVQDAS 212
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADI-KLISVDNNLSRLNMISENLKRLN 179
AQLAAPLL+ ++ +LDAC APGGKT HL E+A + K++++D++ RL + EN++R N
Sbjct: 213 AQLAAPLLNPKNTDLILDACCAPGGKTTHLSELAPLSKIVALDSDADRLKRVQENIERFN 272
Query: 180 LKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIP 239
+K + ++ ++ ++FD+IL D PC+ +GV+RR+PDI
Sbjct: 273 IKNITLFQGKAQTQ----------------DWWDGQHFDKILLDAPCSATGVIRRHPDIK 316
Query: 240 WLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSI- 298
LR+ DI L ILNNLW MLKPGG LL+ TCS+ E+E Q F +NH ++I
Sbjct: 317 LLRKPKDISALITLQKDILNNLWTMLKPGGTLLYATCSILKNENEVQIAQFLQNHSEAIE 376
Query: 299 -RLNSPGQLLPTVNKKQ----DYDGFFYSLFQK 326
++ T K+Q ++DGF+Y++ +K
Sbjct: 377 EKIILDWGFDTTHGKQQIPCYEFDGFYYAILKK 409
>gi|389795253|ref|ZP_10198383.1| ribosomal RNA small subunit methyltransferase RsmB [Rhodanobacter
fulvus Jip2]
gi|388431030|gb|EIL88134.1| ribosomal RNA small subunit methyltransferase RsmB [Rhodanobacter
fulvus Jip2]
Length = 434
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 109/339 (32%), Positives = 187/339 (55%), Gaps = 34/339 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NAILR + R++ + +++ ++ +P W ++ +P Q ++ +++P
Sbjct: 116 LVNAILRRWQRERDSLL-ARLDAKPQTRHAHPAWLAAALQRDWPQ--QSDAVMAADNREP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPIS--ISKIPKFFNGFCSIQD 118
PL LR+N++++ + L+ +G + L+ L P S ++++P F +GF ++QD
Sbjct: 173 PLMLRVNRQRSGRQALIDQLQGAGYAASAHPWLSDALVLPHSTDVTRMPGFEDGFFAVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRL 178
AAQ+AA L D+R G+ VLDAC+APGGK CHLLE ADI L +++ + +R I +NL RL
Sbjct: 233 GAAQVAADLADLRDGLRVLDACAAPGGKACHLLERADIDLTALEFDAARAERIRQNLMRL 292
Query: 179 NLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDI 238
L A +++ D ++K + FDRIL D PC+ +GV+RR PD+
Sbjct: 293 RLNAKVVIGDAGAPK----------------GWWKGQPFDRILIDAPCSATGVLRRRPDV 336
Query: 239 PWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEE--QAIIFSKNHKD 296
RR++DI + +IL LW +L PGG+L+++TCS+ E+E ++ ++
Sbjct: 337 RLHRRESDIAAMHAQQRRILAALWPLLAPGGRLVYITCSVLRAENEAIVAELLAAQPDAQ 396
Query: 297 SIRLNSPG--------QLLPTVNKKQDYDGFFYSLFQKR 327
+I P Q+LP D DG +Y++ +KR
Sbjct: 397 AIAFTLPAGQAAGVGWQILPG---DGDLDGMYYAVIEKR 432
>gi|406946283|gb|EKD77540.1| hypothetical protein ACD_42C00303G0007 [uncultured bacterium]
Length = 434
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 131/340 (38%), Positives = 190/340 (55%), Gaps = 34/340 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++N ILR + ++ E K+ I + ++P W I+ +K +P WKNIL+ ++K
Sbjct: 112 LVNKILRIVITQQKE-NTLKIKGITAEF-SHPNWIIDAIKNAWPE--NWKNILEANNQKA 167
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
PL LR+N+ K + K L + + +I P AI + I I KIP F++G S+QD
Sbjct: 168 PLFLRVNKTKINSKQFQKKLSAENIASELIEDLPQAILITKAIPIEKIPGFYDGLFSVQD 227
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADI--KLISVDNNLSRLNMISENLK 176
A+ Q LD++S +LDAC+APG KT H+LE I KLISVD++ SRL I+EN+K
Sbjct: 228 ASGQKVIDYLDLQSDHIILDACAAPGSKTTHILECYPIIKKLISVDSSQSRLAKINENIK 287
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L + N+K + +DI + + F +N FDRIL D PC+ GV+RR+P
Sbjct: 288 RLQLNSQ---------NVKLMVVDI---LSIQQEFSEN-VFDRILLDAPCSAIGVIRRHP 334
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEE----------Q 286
DI LR+K DIK LS+ +L +W +LKP GKL++ TCS+ E+E+
Sbjct: 335 DIKILRKKTDIKNLSEQQLIMLKTIWPLLKPNGKLIYTTCSILPNENEQVIQLFLAAQPN 394
Query: 287 AIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 326
A I N+ I L Q+L + DGFFYS+ QK
Sbjct: 395 AKIIPINNNWGINLQYGQQVL---TGDHNRDGFFYSILQK 431
>gi|333985162|ref|YP_004514372.1| sun protein [Methylomonas methanica MC09]
gi|333809203|gb|AEG01873.1| sun protein [Methylomonas methanica MC09]
Length = 431
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 116/337 (34%), Positives = 186/337 (55%), Gaps = 30/337 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR +LR E +K + ++ N+P W I Q++ +P Q++ IL + P
Sbjct: 112 LVNAVLRRYLRD-AETLSAKCASDRQAELNHPYWLIKQLQTNWPE--QYRQILSANDQPP 168
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N R+ + Y + L G+ + P A+ L +++ ++P F G S+QD
Sbjct: 169 PMALRVNLRQNSRDDYLRQLNLQGISAQPVAQCPTALLLDEALNVEQLPGFSEGRVSVQD 228
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQLAA LLD + G VLD C+APGGKT +LE L+++D + +RL +++NL+
Sbjct: 229 VAAQLAAGLLDAQPGDRVLDICAAPGGKTAAILERQPGLQSLLALDIDANRLQRVTDNLQ 288
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL+L+A + +D + + + + F+RIL D PC+G GV+RR+P
Sbjct: 289 RLHLRADTLAADAADPQ----------------NWAEGRQFERILLDAPCSGFGVIRRHP 332
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI LRR++DI L + KIL+ W +L PGG LL+ TCS+ +E+E Q F H D
Sbjct: 333 DIKLLRRESDIAALQELQAKILDAAWDLLVPGGILLYATCSVLKQENELQIADFLDRHSD 392
Query: 297 SIRLN-SPGQLLPTVNKKQ------DYDGFFYSLFQK 326
++ L+ G + + +Q DGF+Y+ K
Sbjct: 393 AMELSIDAGWGMARPHGRQILTGDCQMDGFYYAKLGK 429
>gi|399518639|ref|ZP_10759593.1| Sun protein [Pseudomonas pseudoalcaligenes CECT 5344]
gi|399113133|emb|CCH36151.1| Sun protein [Pseudomonas pseudoalcaligenes CECT 5344]
Length = 435
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 119/345 (34%), Positives = 182/345 (52%), Gaps = 40/345 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYN--IHESYWNYPIWWINQVKITYPNFFQWKNILDVGHK 58
++NA+LR R+ +F + +H ++ P W +K +P W+ I +
Sbjct: 113 LLNAVLRRAQREHETLFAELDRDPVLHSAH---PRWLQKALKAHWPQ--HWQAICAANNA 167
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGL--ETTIIGPLAIKLHTPISISKIPKFFNGFCSI 116
PPL LR+N+R + +Y + L+ +GL E ++L P ++ +P F G S+
Sbjct: 168 HPPLILRVNRRHGSRDAYLEELRSAGLAAEPCTFSRDGVRLLQPCDVTTLPGFKEGRVSV 227
Query: 117 QDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISEN 174
QD AAQLAA LL++ G VLDAC+APGGKTCHLLE+ ++++VD RL + EN
Sbjct: 228 QDEAAQLAADLLELAPGQRVLDACAAPGGKTCHLLEVEPGLGEVVAVDLEAKRLARVREN 287
Query: 175 LKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRR 234
L RL+L+ATLI +D + T ++ + F RIL D PC+ +GV+RR
Sbjct: 288 LDRLHLEATLIAAD-------------GRATGA---WWDGQPFQRILLDAPCSATGVIRR 331
Query: 235 NPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH 294
+PDI R+ DI L++ ++L+ LW L PGG LL+ TCS+ E+ E F
Sbjct: 332 HPDIKLTRKPEDIPALAQLQGELLDALWPTLVPGGILLYATCSVLPTENSETIAAFLART 391
Query: 295 KDSIRLNSPG----------QLLPTVNKKQDYDGFFYSLFQKRKE 329
D+ + G QLLP ++ +DGF+Y+ KR +
Sbjct: 392 PDAQEVAIAGEFGLQPAHGRQLLPQLDG---HDGFYYAKLFKRPQ 433
>gi|254447515|ref|ZP_05060981.1| ribosomal RNA small subunit methyltransferase B [gamma
proteobacterium HTCC5015]
gi|198262858|gb|EDY87137.1| ribosomal RNA small subunit methyltransferase B [gamma
proteobacterium HTCC5015]
Length = 431
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 121/342 (35%), Positives = 182/342 (53%), Gaps = 38/342 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR LR++ E ++ K+ + + + P W +N ++ +P+ QW I + KP
Sbjct: 112 VINAVLRNALRQRDE-WRGKIADEEAAQHSLPRWLLNFLEGNWPD--QWTGIAEASLAKP 168
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGP----LAIKLHTPISISKIPKFFNGFCSI 116
P+TLRI+ Y + L S L+ P A+ + P+ +P F G S+
Sbjct: 169 PMTLRIS--GGARDQYRQRL--SALDIECHAPERADWALTITPPVDTDVLPGFAKGEASV 224
Query: 117 QDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENL 175
QDAAAQ AAPLL+ ++G VLDAC+APGGKT H+LE A + L+++D RL + +NL
Sbjct: 225 QDAAAQWAAPLLNPQAGERVLDACAAPGGKTGHMLEWASALDLVALDLEPKRLARVEQNL 284
Query: 176 KRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRN 235
RL A L+ +D+ + R++ + FDRIL D PC+ SGV+RR+
Sbjct: 285 TRLGRSAELLSADL----------------RDTARWWNGQAFDRILLDAPCSASGVIRRH 328
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI LR+ DI L + + L+ W LK GG LL+ TCSL+ E++ Q F + H
Sbjct: 329 PDIKLLRQPEDINALVELQAQCLDAAWSTLKEGGTLLYATCSLFKAENQHQVREFLERHS 388
Query: 296 DSIRLNSPGQLLPTVNK--KQDY--------DGFFYSLFQKR 327
D+ LP ++ Q + DGFFY+ +KR
Sbjct: 389 DAALDAFSETALPGIDTGYGQQFFPGGPFNGDGFFYARLRKR 430
>gi|429210998|ref|ZP_19202164.1| putative tRNA and rRNA cytosine-C5-methylase [Pseudomonas sp. M1]
gi|428158412|gb|EKX04959.1| putative tRNA and rRNA cytosine-C5-methylase [Pseudomonas sp. M1]
Length = 436
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 119/339 (35%), Positives = 177/339 (52%), Gaps = 42/339 (12%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ GE+ + + + +P W +K +P F+ + H P
Sbjct: 115 LLNAVLRRAQRE-GEVLLADVDRDPAARLAHPRWLQKALKQAWPEQFEAMCAANNAH--P 171
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLA-----IKLHTPISISKIPKFFNGFCS 115
P+TLR+N+R+ + +Y L+ +GLE P A I+L P + ++P F G S
Sbjct: 172 PMTLRVNRRQGSRDAYLAELQAAGLEAA---PCAYSRDGIQLAQPCDVRELPGFAEGRVS 228
Query: 116 IQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISE 173
+QD AAQLAA LL++ G VLDAC APGGKTCHLLE ++ VD SRL + E
Sbjct: 229 VQDEAAQLAADLLELAPGQRVLDACCAPGGKTCHLLEAEPGLAGVLGVDLEESRLVRVRE 288
Query: 174 NLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVR 233
NL+RL L ATL+ +D + ++ K F RIL D PC+ +GV+R
Sbjct: 289 NLQRLRLDATLVAAD----------------GRDTVAWWDGKPFQRILLDAPCSATGVIR 332
Query: 234 RNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKN 293
R+PDI R DI L++ ++L+ LW L+ GG LL+ TCS+ +E+ E F
Sbjct: 333 RHPDIKLTRAAEDIPALAQLQGELLDALWPTLEVGGILLYATCSVMPQENRESIAAFLAR 392
Query: 294 HKDSIRLNSPG----------QLLPTVNKKQDYDGFFYS 322
+ L+ G QLLP ++ +DGF+Y+
Sbjct: 393 TPGARELDLAGPWGLKQAHGRQLLP---QEGGHDGFYYA 428
>gi|400406380|ref|YP_006589128.1| ribosomal RNA small subunit methyltransferase RsmB [secondary
endosymbiont of Heteropsylla cubana]
gi|400364633|gb|AFP85700.1| ribosomal RNA small subunit methyltransferase RsmB [secondary
endosymbiont of Heteropsylla cubana]
Length = 432
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 119/333 (35%), Positives = 191/333 (57%), Gaps = 35/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR+F R+K ++ ++ N + +P W + + +P ++ I++ ++ P
Sbjct: 117 LINAVLRQFQRQKRDLL-LEVKNNQDVCHLHPKWLKERFYMAWP--MHYEQIMNANNQHP 173
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG----PLAIKLHTPISISKIPKFFNGFCSI 116
P+ LR+NQ+ SY LL G+ +G P AI+L TP + +P F+ G+ S+
Sbjct: 174 PMWLRVNQQYHNRDSYLSLLTDLGIAA--VGHKTLPYAIRLETPYTARILPGFYEGWVSV 231
Query: 117 QDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENL 175
QDA++Q A LL ++G +LD C+APG KT H+LEIA ++++VD ++ R+ I ENL
Sbjct: 232 QDASSQGAVVLLAPKNGEKILDLCAAPGCKTTHILEIAPAAQVVAVDIDIKRVIRIYENL 291
Query: 176 KRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRN 235
RL ++A +++ D K N + FDRIL D PC+ +GV+RR+
Sbjct: 292 TRLKMQANVVIGDGCKPN----------------TWSSGIVFDRILLDPPCSATGVIRRH 335
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PD+ WLRR +DI KL+K KIL + WK+LKPGG L+ TCS+ EE+ +Q F ++
Sbjct: 336 PDVKWLRRDSDIAKLAKLQKKILCSAWKLLKPGGVFLYTTCSILPEENCDQIAAFLDSNP 395
Query: 296 DSI-----RLNSPG-QLLPTVNKKQDYDGFFYS 322
+++ + + G QL P + DGFFY+
Sbjct: 396 NALLQKISKFSEVGLQLFPQPDSG---DGFFYA 425
>gi|406941499|gb|EKD73973.1| hypothetical protein ACD_45C00123G0007 [uncultured bacterium]
Length = 430
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 120/341 (35%), Positives = 190/341 (55%), Gaps = 41/341 (12%)
Query: 2 INAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
INA+LR + R EI ++ + +++ +P W I ++ +PN W+ IL ++ PP
Sbjct: 114 INAVLRNYQRSADEINQA-IQTESVAFYAHPAWLIERLMHDWPN--DWQAILIANNQHPP 170
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLA-----IKLHTPISISKIPKFFNGFCSI 116
LR+N++K + Y L+K ++ P++ I L PI + ++P F G S+
Sbjct: 171 FALRVNRQKNSREGY---LQKLTVQHIAAYPISETGAGIMLAQPIHVQQLPGFTRGEISV 227
Query: 117 QDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEI-ADIKLISVDNNLSRLNMISENL 175
QD AAQLAA L+ G +LDAC+APGGKT HLLE+ D++LI++D + RL + ENL
Sbjct: 228 QDGAAQLAAELVMPLLGDRILDACAAPGGKTAHLLELHPDMELIAIDRDAKRLQRVYENL 287
Query: 176 KRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRN 235
+RL L ATLI +D + ++ K FDRIL D PC+ SGV+RR+
Sbjct: 288 ERLQLSATLICAD----------------AGDPETWWDGKQFDRILLDAPCSASGVIRRH 331
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI LR+ D+ L ++L LW +LKPGG +++VTCS++ EE+ F + ++
Sbjct: 332 PDIKLLRQAGDVVNLVNEQRRLLTALWPLLKPGGFMVYVTCSVFPEENTCLVESFMRTNR 391
Query: 296 DS----IRLN------SPGQLLPTVNKKQDYDGFFYSLFQK 326
D+ I+ + Q+LP ++ DGF+++ +K
Sbjct: 392 DAKEEKIQCSWGKECVVGRQILPGMHS---MDGFYFACLRK 429
>gi|313111462|ref|ZP_07797263.1| putative tRNA and rRNA cytosine-C5-methylase [Pseudomonas
aeruginosa 39016]
gi|310883765|gb|EFQ42359.1| putative tRNA and rRNA cytosine-C5-methylase [Pseudomonas
aeruginosa 39016]
Length = 434
Score = 197 bits (501), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 115/336 (34%), Positives = 174/336 (51%), Gaps = 36/336 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ GE +++ + +P W + +K +P Q + + P
Sbjct: 113 VLNAVLRRAQRE-GETLLAEVDRDPSARLGHPRWLLKALKQAWPE--QLDALCAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTII--GPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+TLR+N+R +Y L ++G+E I+L P + ++P F G S+QD
Sbjct: 170 PMTLRVNRRHGERDAYLAELAEAGIEARACDYSRDGIQLAAPCDVRELPGFAEGRVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQLAA LL+ G VLDAC APGGKTCHLLE ++++VD SRL + ENL+
Sbjct: 230 EAAQLAAELLESAPGQRVLDACCAPGGKTCHLLETQPGLAEVVAVDLEESRLVRVRENLQ 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L+A+L+ +D ++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLQASLVAADARATG----------------EWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ DI L+ ++L+ LW L+ GG LL+ TCS+ E+ + F
Sbjct: 334 DIKLARKPEDIAALAHLQGELLDALWPTLEVGGVLLYATCSVMPAENSDSIAAFLARTPG 393
Query: 297 SIRLNSPG----------QLLPTVNKKQDYDGFFYS 322
+ L+ PG QLLP V + +DGF+Y+
Sbjct: 394 ARELDLPGPWGMKQPHGRQLLPQV---EGHDGFYYA 426
>gi|406979562|gb|EKE01322.1| hypothetical protein ACD_21C00160G0005 [uncultured bacterium]
Length = 431
Score = 197 bits (501), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 118/339 (34%), Positives = 185/339 (54%), Gaps = 36/339 (10%)
Query: 2 INAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPP 61
+NA LR F+R++ E+ K ++ Y ++P W I ++ ++ +W IL ++ PP
Sbjct: 115 VNATLRNFIRRQEEVLKQIEGDVVAQY-SHPAWLIKLLQRSW--LQKWPGILMANNEYPP 171
Query: 62 LTLRINQRKTTLISYNKLLKKSGLETTIIGPLA--IKLHTPISISKIPKFFNGFCSIQDA 119
+ LR+N++K + Y K L+ ++ ++ A I L P + K+P F +G S+QD
Sbjct: 172 MHLRVNEQKISSGEYLKKLEVVDIQAKLVSGFASAITLEKPCDVFKLPGFQDGLVSVQDL 231
Query: 120 AAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKR 177
AAQ AA LL+++ G+ VLDAC+APGGKT H+LE +L++VD RL + +NLKR
Sbjct: 232 AAQYAASLLELKPGLRVLDACAAPGGKTAHILETEPELQELVAVDIEDERLKRVRDNLKR 291
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L A I D +K ++ K FDRIL D PC+G+GV+RR+PD
Sbjct: 292 LQLSAKCICGDAAKPQ----------------NWWDGKKFDRILLDAPCSGTGVIRRHPD 335
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I LR+ +DIK+ + ++L LW +L GG L++ TCS+ EE+ F + + D+
Sbjct: 336 IKILRQPHDIKRNTARQLELLEALWPLLVEGGILVYATCSVLPEENFLVVKEFLQKYNDA 395
Query: 298 ----------IRLNSPGQLLPTVNKKQDYDGFFYSLFQK 326
+ + QL PT N DGF+Y++ K
Sbjct: 396 KEKSIAMEEGVVVVHGRQLFPTANGG---DGFYYAVITK 431
>gi|386062989|ref|YP_005978293.1| putative tRNA and rRNA cytosine-C5-methylases [Pseudomonas
aeruginosa NCGM2.S1]
gi|348031548|dbj|BAK86908.1| putative tRNA and rRNA cytosine-C5-methylases [Pseudomonas
aeruginosa NCGM2.S1]
Length = 434
Score = 197 bits (501), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 115/336 (34%), Positives = 174/336 (51%), Gaps = 36/336 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ GE +++ + +P W + +K +P Q + + P
Sbjct: 113 VLNAVLRRAQRE-GETLLAEVDRDPSARLGHPRWLLKALKQAWPE--QLDALCAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTII--GPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+TLR+N+R +Y L ++G+E I+L P + ++P F G S+QD
Sbjct: 170 PMTLRVNRRHGERDAYLAELAEAGIEARACDYSRDGIQLAAPCDVRELPGFAEGRVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQLAA LL+ G VLDAC APGGKTCHLLE ++++VD SRL + ENL+
Sbjct: 230 EAAQLAAELLESAPGQRVLDACCAPGGKTCHLLETQPGLAEVVAVDLEESRLVRVRENLQ 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L+A+L+ +D ++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLQASLVAADARATG----------------EWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ DI L+ ++L+ LW L+ GG LL+ TCS+ E+ + F
Sbjct: 334 DIKLARKPEDIAALAHLQGELLDALWPTLEVGGVLLYATCSVMPAENSDSIAAFLARTPG 393
Query: 297 SIRLNSPG----------QLLPTVNKKQDYDGFFYS 322
+ L+ PG QLLP V + +DGF+Y+
Sbjct: 394 ARELDLPGPWGMKQPHGRQLLPQV---EGHDGFYYA 426
>gi|365834673|ref|ZP_09376116.1| ribosomal RNA small subunit methyltransferase B [Hafnia alvei ATCC
51873]
gi|364568786|gb|EHM46424.1| ribosomal RNA small subunit methyltransferase B [Hafnia alvei ATCC
51873]
Length = 430
Score = 197 bits (500), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 115/331 (34%), Positives = 183/331 (55%), Gaps = 32/331 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ ++ + N E + +P W + +++ YP QW++I+D +++P
Sbjct: 118 LINGVLRQFQRQEDQLKERAQNN--ECRFLHPSWLLKRLQQAYPQ--QWESIVDANNQRP 173
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T Y LL K+ + P AI L + ++P F G+ ++QD
Sbjct: 174 PMWLRVNRLHHTRDEYLALLAKAEINAFAHPQFPDAICLEEASPVGRLPGFEQGWVTVQD 233
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LLD ++G +LD C APGGKT H+LE A +++VD + +RL + ENL R
Sbjct: 234 ASAQHCVDLLDPQNGEQILDLCCAPGGKTTHILEAAPKAHVLAVDVDENRLKRVKENLHR 293
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L +A + D + N + ++ FDRIL D PC+ +GV+RR+PD
Sbjct: 294 LQQQAEVKCGD-------------GRYPEN---WCGDRQFDRILLDAPCSATGVIRRHPD 337
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR DI +L+ +I+ +W LK GG +++ TCS+ EE+ +Q F H ++
Sbjct: 338 IKWLRRDRDIAELAALQKEIIEAIWPHLKSGGVMVYATCSVLPEENAQQMREFLARHPEA 397
Query: 298 IRLNS-----PGQL-LPTVNKKQDYDGFFYS 322
+ + PGQ LP QD DGFFY+
Sbjct: 398 QLVTTGDQENPGQQHLPHA---QDGDGFFYA 425
>gi|355650969|ref|ZP_09056397.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas sp.
2_1_26]
gi|354826493|gb|EHF10705.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas sp.
2_1_26]
Length = 434
Score = 197 bits (500), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 115/336 (34%), Positives = 174/336 (51%), Gaps = 36/336 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ GE +++ + +P W + +K +P Q + + P
Sbjct: 113 VLNAVLRRAQRE-GETLLAEVDRDPSARLGHPRWLLKALKQAWPE--QLDTLCAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTII--GPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+TLR+N+R +Y L ++G+E I+L P + ++P F G S+QD
Sbjct: 170 PMTLRVNRRHGERDAYLAELAEAGIEARACDYSRDGIQLAAPRDVRELPGFAEGRVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQLAA LL+ G VLDAC APGGKTCHLLE ++++VD SRL + ENL+
Sbjct: 230 EAAQLAAELLESAPGQRVLDACCAPGGKTCHLLETQPGLAEVVAVDLEESRLVRVRENLQ 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L+A+L+ +D ++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLQASLVAADARATG----------------EWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ DI L+ ++L+ LW L+ GG LL+ TCS+ E+ + F
Sbjct: 334 DIKLARKPEDIAALAHLQGELLDALWPTLEVGGVLLYATCSVMPAENSDSIAAFLARTPG 393
Query: 297 SIRLNSPG----------QLLPTVNKKQDYDGFFYS 322
+ L+ PG QLLP V + +DGF+Y+
Sbjct: 394 ARELDLPGPWGMKQPHGRQLLPQV---EGHDGFYYA 426
>gi|296386489|ref|ZP_06875988.1| putative tRNA and rRNA cytosine-C5-methylases [Pseudomonas
aeruginosa PAb1]
gi|416881410|ref|ZP_11921605.1| 16S rRNA methyltransferase B [Pseudomonas aeruginosa 152504]
gi|334835789|gb|EGM14641.1| 16S rRNA methyltransferase B [Pseudomonas aeruginosa 152504]
Length = 434
Score = 197 bits (500), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 115/336 (34%), Positives = 174/336 (51%), Gaps = 36/336 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ GE +++ + +P W + +K +P Q + + P
Sbjct: 113 VLNAVLRRAQRE-GETLLAEVDRDPSARLGHPRWLLKALKQAWPE--QLDTLCAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTII--GPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+TLR+N+R +Y L ++G+E I+L P + ++P F G S+QD
Sbjct: 170 PMTLRVNRRHGERDAYLAELAEAGIEARACDYSRDGIQLAAPRDVRELPGFAEGRVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQLAA LL+ G VLDAC APGGKTCHLLE ++++VD SRL + ENL+
Sbjct: 230 EAAQLAAELLESAPGQRVLDACCAPGGKTCHLLETQPGLAEVVAVDLEESRLVRVRENLQ 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L+A+L+ +D ++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLQASLVAADARATG----------------EWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ DI L+ ++L+ LW L+ GG LL+ TCS+ E+ + F
Sbjct: 334 DIKLARKPEDIAALAHLQGELLDALWPTLEVGGVLLYATCSVMPAENSDSIAAFLARTPG 393
Query: 297 SIRLNSPG----------QLLPTVNKKQDYDGFFYS 322
+ L+ PG QLLP V + +DGF+Y+
Sbjct: 394 ARELDLPGPWGMKQPHGRQLLPQV---EGHDGFYYA 426
>gi|421167537|ref|ZP_15625720.1| hypothetical protein PABE177_2544 [Pseudomonas aeruginosa ATCC
700888]
gi|404534225|gb|EKA43978.1| hypothetical protein PABE177_2544 [Pseudomonas aeruginosa ATCC
700888]
Length = 434
Score = 197 bits (500), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 116/336 (34%), Positives = 174/336 (51%), Gaps = 36/336 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ GE +++ + +P W + +K +P Q + + P
Sbjct: 113 VLNAVLRRAQRE-GETLLAEVDRDPSARLGHPRWLLKALKQAWPE--QLDALCAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTII--GPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+TLR+N+R +Y L ++G+E I+L P + ++P F G S+QD
Sbjct: 170 PMTLRVNRRHGERDAYLAELAEAGIEARACDYSRDGIQLAAPRDVRELPGFAEGRVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQLAA LL+ G VLDAC APGGKTCHLLE ++I+VD SRL + ENL+
Sbjct: 230 EAAQLAAELLESAPGQRVLDACCAPGGKTCHLLETQPGLAEVIAVDLEESRLVRVRENLQ 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L+A+L+ +D ++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLQASLVAADARATG----------------EWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ DI L+ ++L+ LW L+ GG LL+ TCS+ E+ + F
Sbjct: 334 DIKLARKPEDIAALAHLQGELLDALWPTLEVGGVLLYATCSVMPAENSDSIAAFLARTPG 393
Query: 297 SIRLNSPG----------QLLPTVNKKQDYDGFFYS 322
+ L+ PG QLLP V + +DGF+Y+
Sbjct: 394 ARELDLPGPWGMKQPHGRQLLPQV---EGHDGFYYA 426
>gi|317494309|ref|ZP_07952723.1| ribosomal RNA small subunit methyltransferase B [Enterobacteriaceae
bacterium 9_2_54FAA]
gi|316917559|gb|EFV38904.1| ribosomal RNA small subunit methyltransferase B [Enterobacteriaceae
bacterium 9_2_54FAA]
Length = 430
Score = 196 bits (499), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 115/333 (34%), Positives = 184/333 (55%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ ++ + N E + +P W + +++ YP QW++I+D +++P
Sbjct: 118 LINGVLRQFQRQEDQLKERAQNN--ECRFLHPSWLLKRLQQAYPQ--QWESIVDANNQRP 173
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + Y LL K+ + P AI L + ++P F G+ ++QD
Sbjct: 174 PMWLRVNRLHHSRDEYLALLAKAEINAFAHPQFPDAICLEEASPVGRLPGFEQGWVTVQD 233
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LLD ++G +LD C APGGKT H+LE A +++VD + +RL + ENL R
Sbjct: 234 ASAQHCVDLLDPQNGEQILDLCCAPGGKTTHILEAAPKAHVLAVDVDENRLRRVKENLHR 293
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +A + D R+ ++ +K FDRIL D PC+ +GV+RR+
Sbjct: 294 LQQQAEVKCGD------------------GRYPEKWCGDKQFDRILLDAPCSATGVIRRH 335
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L+ +I+ +W LK GG +++ TCS+ EE+ +Q F H
Sbjct: 336 PDIKWLRRDRDIAELAALQKEIIEAIWPHLKSGGVMVYATCSVLPEENAQQMREFLSRHP 395
Query: 296 DSIRL-----NSPGQL-LPTVNKKQDYDGFFYS 322
++ + +PGQ LP QD DGFFY+
Sbjct: 396 EAQLMITGDQKNPGQQHLPHA---QDGDGFFYA 425
>gi|421153048|ref|ZP_15612610.1| hypothetical protein PABE171_1959 [Pseudomonas aeruginosa ATCC
14886]
gi|404524332|gb|EKA34681.1| hypothetical protein PABE171_1959 [Pseudomonas aeruginosa ATCC
14886]
Length = 434
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 115/336 (34%), Positives = 174/336 (51%), Gaps = 36/336 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ GE +++ + +P W + +K +P Q + + P
Sbjct: 113 VLNAVLRRAQRE-GETLLAEVDRDPSARLGHPRWLLKALKQAWPE--QLDALCAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTII--GPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+TLR+N+R +Y L ++G+E I+L P + ++P F G S+QD
Sbjct: 170 PMTLRVNRRHGERDAYLAELAEAGIEARACDYSRDGIQLAAPRDVRELPGFAEGRVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQLAA LL+ G VLDAC APGGKTCHLLE ++++VD SRL + ENL+
Sbjct: 230 EAAQLAAELLESAPGQRVLDACCAPGGKTCHLLETQPELAEVVAVDLEESRLVRVRENLQ 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L+A+L+ +D ++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLQASLVAADARATG----------------EWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ DI L+ ++L+ LW L+ GG LL+ TCS+ E+ + F
Sbjct: 334 DIKLARKPEDIAALAHLQGELLDALWPTLEVGGVLLYATCSVMPAENSDSIAAFLARTPG 393
Query: 297 SIRLNSPG----------QLLPTVNKKQDYDGFFYS 322
+ L+ PG QLLP V + +DGF+Y+
Sbjct: 394 ARELDLPGPWGMKQPHGRQLLPQV---EGHDGFYYA 426
>gi|90406716|ref|ZP_01214909.1| sun protein [Psychromonas sp. CNPT3]
gi|90312169|gb|EAS40261.1| sun protein [Psychromonas sp. CNPT3]
Length = 434
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 123/340 (36%), Positives = 184/340 (54%), Gaps = 34/340 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
M+N +LR FLR++ E K + +P W + +++ Y + +I+ +++
Sbjct: 113 MVNGVLRNFLREQ-EALIEKADQQDTLLYCHPGWLVKRLQSAYGKE-KAASIMLENNQQA 170
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTII----GPLAIKLHTPISISKIPKFFNGFCSI 116
P+ LR+N + SY LL + L + + A+ L + ++P F +G+ S+
Sbjct: 171 PMWLRVNALHHDVKSYQALLTEKDLGSRLALDSENKNALCLDKATDVYQLPGFEDGWVSV 230
Query: 117 QDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE----IADIKLISVDNNLSRLNMIS 172
QD AAQLAA LD + G VLDAC+APGGKT H LE IA ++++VD + RL +
Sbjct: 231 QDGAAQLAAHYLDAQPGDLVLDACAAPGGKTVHSLERQPKIA--QMVAVDADDKRLVRVR 288
Query: 173 ENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVV 232
ENL+RLNL AT+I D S ++ ++K + FDRIL D PC+ +GV+
Sbjct: 289 ENLERLNLTATVIHGDASTPDV----------------WWKGEKFDRILCDAPCSATGVI 332
Query: 233 RRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSK 292
RR+PDI WLRR +DIK+L ILN LW LK GG LL+ TCS+ +E++ Q F +
Sbjct: 333 RRHPDIRWLRRDSDIKELVSLQKSILNALWDKLKAGGILLYATCSILPDENDLQIKAFLE 392
Query: 293 NHKDSIRLNSPGQLLPTVNKKQ------DYDGFFYSLFQK 326
H D+ + Q T +Q DGF+Y+ QK
Sbjct: 393 THADAKLVPLSKQYASTTVGRQLLPNDDTMDGFYYAKLQK 432
>gi|334702669|ref|ZP_08518535.1| 16S rRNA methyltransferase B [Aeromonas caviae Ae398]
Length = 430
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 120/335 (35%), Positives = 189/335 (56%), Gaps = 35/335 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR F R E+ ++ + +P W +++ YP+ W+ I++ +++P
Sbjct: 113 LINGVLRNFQRS-AEVILLRIDRVPSVRLGHPEWLTKRLRQAYPD--DWEFIMEANNQRP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ +R N ++ + + + ++G+ + G I L P ++K+P F G CS+QD
Sbjct: 170 PMWIRNNSQRQSREAMLARMSEAGIPAMAGVEGEDCILLERPCDVTKLPGFEQGDCSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE--IADIKLISVDNNLSRLNMISENLK 176
AAQ AA LLD + G +VLDAC+APGGKT HLLE A +++VD + +RL + ENL
Sbjct: 230 GAAQQAAALLDPQPGEWVLDACAAPGGKTAHLLERQPALAGVVAVDADDNRLKRVQENLD 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
R+ L+A +I D S +L ++ FDRIL D PC+ +GV+RR+P
Sbjct: 290 RIGLQAQVIHGDASTPDL----------------WWPQGQFDRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLRR DI++L++ +IL+ LW LK GG LL+ TCS+ EE+ EQ F + D
Sbjct: 334 DIKWLRRDQDIRELAELQRRILDALWGKLKQGGTLLYATCSVLPEENREQIRAFLADTPD 393
Query: 297 S--IRLNS------PG-QLLPTVNKKQDYDGFFYS 322
+ + L++ PG Q LP + + DGF+Y+
Sbjct: 394 ARLVPLHAEDTPACPGRQFLPG---EAEMDGFYYA 425
>gi|92114986|ref|YP_574914.1| sun protein [Chromohalobacter salexigens DSM 3043]
gi|91798076|gb|ABE60215.1| 16S rRNA m(5)C-967 methyltransferase [Chromohalobacter salexigens
DSM 3043]
Length = 433
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 117/345 (33%), Positives = 177/345 (51%), Gaps = 39/345 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++N LR F R + ++++ +P W + + + +P+ W+ + + +
Sbjct: 112 VLNGCLRRFQRDT-QTLQAQVDRDPSVALLHPEWMLTEWRQAWPD--DWRALAEANNCPG 168
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLET--TIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+TLR+N R+ +Y L+ +GL T P + L P + +P F G S+QD
Sbjct: 169 PMTLRVNVRQGDRDAYLARLEDAGLSASPTPFAPQGLTLAEPCDVRALPGFAEGAVSVQD 228
Query: 119 ----AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISEN 174
AA L AP L R G VLDACSAPGGKT HLLE DI L ++D++ RL+ ++
Sbjct: 229 EAAQLAATLLAPCLAERPGARVLDACSAPGGKTAHLLEAFDIDLTALDSDAERLDRVNAT 288
Query: 175 LKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRR 234
L+RL L AT I +D S ++ FD +L D PC+G+GV+RR
Sbjct: 289 LERLGLDATTIAADASH-----------------HAWWDGHAFDAVLLDAPCSGTGVIRR 331
Query: 235 NPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH 294
+PDI LRR DI++L+ ++L+ W L PGG LL+ TCS+ EE+ +Q F
Sbjct: 332 HPDIKRLRRPRDIRELAALQARLLDAAWHTLAPGGTLLYATCSVMPEENADQVAAFLART 391
Query: 295 KDS---------IRLNSPG-QLLPTVNKKQDYDGFFYSLFQKRKE 329
D+ R G QLLP ++ +DGFFY+ +K+ E
Sbjct: 392 PDARAETIEAAWGRPAGDGRQLLPRIDG---HDGFFYARLRKQSE 433
>gi|421615476|ref|ZP_16056500.1| 16S rRNA methyltransferase B [Pseudomonas stutzeri KOS6]
gi|409782549|gb|EKN62104.1| 16S rRNA methyltransferase B [Pseudomonas stutzeri KOS6]
Length = 440
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 115/336 (34%), Positives = 174/336 (51%), Gaps = 36/336 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ GE +++ + +P W +K +P W+ I + P
Sbjct: 113 LLNAVLRRAQRE-GEALLAELEHDPVIRVAHPRWLQKALKAHWPE--HWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLET--TIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R+ + +Y L+ +G+E + I+L TP + ++P F G S+QD
Sbjct: 170 PMMLRVNRRQGSRDAYLAELQAAGIEAHACVFSEDGIRLATPCDVHQLPGFAEGKVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQLAA LLD+ G VLDAC APGGKTCHLLE L ++D RL + ENL
Sbjct: 230 EAAQLAASLLDLAPGQRVLDACCAPGGKTCHLLEREPQLAGLTALDLEPKRLARVQENLD 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A L+ +D +++ + F RIL D PC+ +GV+RR+P
Sbjct: 290 RLQLSAELVAAD----------------ARATAQWWDGRPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ DI L+ ++L+ LW L+ GG LL+ TCS+ E+ E F +
Sbjct: 334 DIKLTRQAEDIAPLAALQGEMLDALWPTLEVGGVLLYATCSVLPTENREVVGAFLERTPG 393
Query: 297 SIRLNSPG----------QLLPTVNKKQDYDGFFYS 322
+ L+ PG QLLP ++ +DGF+Y+
Sbjct: 394 ARELDLPGSFGLQQPHGRQLLP---QEDGHDGFYYA 426
>gi|329295652|ref|ZP_08252988.1| 16S rRNA methyltransferase B [Plautia stali symbiont]
Length = 428
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 109/335 (32%), Positives = 191/335 (57%), Gaps = 31/335 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++N +LR+F R++ + +++ + YW +P W + +++ +P QW+ I++ +++P
Sbjct: 117 LLNGVLRQFQRQQDALL-AEVNQGPQRYW-HPGWLLKRLQTAWPA--QWQLIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLET-TIIGPLAIKLHTPISISKIPKFFNGFCSIQDA 119
+ LR+N++ + ++ LL + + P A++L P +S++P F G+ ++QD
Sbjct: 173 TMWLRVNRQHHSRDAWLALLTQQDQNAFSADAPDALRLEAPAPVSQLPGFEQGWVTVQDL 232
Query: 120 AAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKRL 178
+AQ A LL +G +LD C+APGGKT H++EIA ++++VD + RL+ ++ENL+RL
Sbjct: 233 SAQRCALLLAPENGETILDLCAAPGGKTTHIIEIALQARVLAVDIDAQRLSRVTENLQRL 292
Query: 179 NLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDI 238
++ SD+ + + + + + FDRIL D PC+ +GV+RR+PDI
Sbjct: 293 GMQ-----SDVRQGDGR-----------TPAAWCDEQQFDRILLDAPCSATGVIRRHPDI 336
Query: 239 PWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSI 298
WLRR DI +L+ +IL +W LK GG LL+ TCS+ +E+++Q F H D++
Sbjct: 337 KWLRRDRDIDELAALQREILAAIWPRLKSGGTLLYATCSVLPQENQQQIDAFLATHDDAV 396
Query: 299 RLNSP-GQL-----LPTVNKKQDYDGFFYSLFQKR 327
P GQL P ++ DGFFY K+
Sbjct: 397 PQALPQGQLNGWQVFPAIDGG---DGFFYVKLMKK 428
>gi|344198260|ref|YP_004782586.1| sun protein [Acidithiobacillus ferrivorans SS3]
gi|343773704|gb|AEM46260.1| sun protein [Acidithiobacillus ferrivorans SS3]
Length = 432
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 111/330 (33%), Positives = 176/330 (53%), Gaps = 29/330 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR +LR++ E + + +P W +++ YP W I + P
Sbjct: 126 LVNAVLRRYLRER-EALDVALVD---RDLGHPAWLAARLRAAYPQ--DWPAIAAANNTTP 179
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISI--SKIPKFFNGFCSIQD 118
PL LR+N ++ +Y +LL + GLE + A L P S+ + +P + G+ ++QD
Sbjct: 180 PLWLRVNTQRVDPGNYRQLLAEQGLEAKGVAWSAAALCLPASVPVATLPGWDAGWVAVQD 239
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRL 178
AAQ+AA +L + G +LDAC+APGGKT HL + +L ++D + RL + E L+R
Sbjct: 240 GAAQMAAHILAPQEGERILDACAAPGGKTAHLWALGATRLDALDRSAERLKRVREALERQ 299
Query: 179 NLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDI 238
L +D ++ ++ +++D IL D PCTG+GV+RR+PDI
Sbjct: 300 GGTVHLQAADAAETAT----------------WWNGEFYDAILLDAPCTGTGVIRRHPDI 343
Query: 239 PWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSI 298
R+ +D+ ++L LW L+PGG+LL+ TCS+ EE+EEQ I F H D+
Sbjct: 344 RLRRQMDDVTAAVAQQVRLLEGLWPCLRPGGRLLYATCSVLPEENEEQIIAFLLRHADAH 403
Query: 299 RLNSP--GQLLPTVNKKQDYDGFFYSLFQK 326
R P GQ LP + DGF+Y+L +K
Sbjct: 404 RSAHPLTGQRLP---GQDAMDGFYYALLEK 430
>gi|146305094|ref|YP_001185559.1| sun protein [Pseudomonas mendocina ymp]
gi|145573295|gb|ABP82827.1| 16S rRNA m(5)C-967 methyltransferase [Pseudomonas mendocina ymp]
Length = 437
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 115/336 (34%), Positives = 177/336 (52%), Gaps = 36/336 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ +F +++ + +P W Q+K +P + W+ I + P
Sbjct: 113 LLNAVLRRAQREHEALF-AELDRDPVLHTAHPRWLQKQLKSFWPEY--WQAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGL--ETTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
PL LR+N+R + +Y + L+ +G E ++L P ++ +P F G S+QD
Sbjct: 170 PLILRVNRRHGSRDAYLEELRGAGFAAEPCTFSRDGVRLLQPCDVTALPGFREGRVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEI--ADIKLISVDNNLSRLNMISENLK 176
AAQLAA LL++ G VLDAC+APGGKTCHLLE A ++I+VD RL + ENL+
Sbjct: 230 EAAQLAADLLELAPGQRVLDACAAPGGKTCHLLEAEPALAEVIAVDLEEKRLTRVRENLQ 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L+A LI +D + ++ F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLEARLIAADGRATKV----------------WWDGTPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ DI L++ ++L+ LW L PGG LL+ TCS+ E+ + F D
Sbjct: 334 DIKLTRKSEDIPALAQLQGELLDALWPTLAPGGILLYATCSVLPTENSDTIAAFLARTPD 393
Query: 297 SIRLNSPG----------QLLPTVNKKQDYDGFFYS 322
+ + G QLLP ++ +DGF+Y+
Sbjct: 394 AQEVAIGGDFGLQAAHGRQLLPQLDG---HDGFYYA 426
>gi|116053737|ref|YP_788172.1| tRNA and rRNA cytosine-C5-methylases [Pseudomonas aeruginosa
UCBPP-PA14]
gi|421177850|ref|ZP_15635495.1| hypothetical protein PACI27_6070 [Pseudomonas aeruginosa CI27]
gi|115588958|gb|ABJ14973.1| putative tRNA and rRNA cytosine-C5-methylases [Pseudomonas
aeruginosa UCBPP-PA14]
gi|404528712|gb|EKA38775.1| hypothetical protein PACI27_6070 [Pseudomonas aeruginosa CI27]
Length = 434
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 114/336 (33%), Positives = 173/336 (51%), Gaps = 36/336 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ GE +++ + +P W + +K +P Q + + P
Sbjct: 113 VLNAVLRRAQRE-GETLLAEVDRDPSARLGHPRWLLKALKQAWPE--QLDTLCAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTII--GPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+TLR+N+R +Y L ++G+E I+L P + ++P F G S+QD
Sbjct: 170 PMTLRVNRRHGERDAYLAELAEAGIEARACDYSRDGIQLAAPRDVRELPGFAEGRVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
A QLAA LL+ G VLDAC APGGKTCHLLE ++++VD SRL + ENL+
Sbjct: 230 EATQLAAELLESAPGQRVLDACCAPGGKTCHLLETQPGLAEVVAVDLEESRLVRVRENLQ 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L+A+L+ +D ++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLQASLVAADARATG----------------EWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ DI L+ ++L+ LW L+ GG LL+ TCS+ E+ + F
Sbjct: 334 DIKLARKPEDIAALAHLQGELLDALWPTLEVGGVLLYATCSVMPAENSDSIAAFLARTPG 393
Query: 297 SIRLNSPG----------QLLPTVNKKQDYDGFFYS 322
+ L+ PG QLLP V + +DGF+Y+
Sbjct: 394 ARELDLPGPWGMKQPHGRQLLPQV---EGHDGFYYA 426
>gi|90019668|ref|YP_525495.1| Sun protein [Saccharophagus degradans 2-40]
gi|89949268|gb|ABD79283.1| ribosomal RNA small subunit methyltransferase B [Saccharophagus
degradans 2-40]
Length = 445
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 117/346 (33%), Positives = 184/346 (53%), Gaps = 39/346 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR + R+K + + K+ +P W+I+ V+ +P W+ IL +++P
Sbjct: 122 LINGVLRNYQREKVAL-QHKLNGSMAFQHAHPQWFIDLVRADWPQ--DWQAILAANNQQP 178
Query: 61 PLTLRINQRKTTLISYNKLLKKS--GLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+TLR N+R + + L K+ G I L I +P F G S+QD
Sbjct: 179 PITLRANKRHCDQKTLLEALHKAEVGAHLCEYSRDGITLEGASDIPALPGFNEGHFSVQD 238
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKR 177
AAQL+A LLD+++ VLD CSAPGGK H+ E A+ I L ++++ SR+ + +NL R
Sbjct: 239 EAAQLSASLLDLQANQRVLDCCSAPGGKAGHICEQANNIDLTCLESDASRMPRVEQNLAR 298
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L A LI+ D ++++ ++ FDRIL D PC+ +GV+RR+PD
Sbjct: 299 LGHTAKLIVEDANEVD----------------SWWDGVPFDRILLDAPCSATGVIRRHPD 342
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I LRR +D+ KL++ +IL ++W+ L PGGKLL+ TCS+ +E+E F D+
Sbjct: 343 IKLLRRPSDLAKLAQLQAQILRSVWRTLAPGGKLLYATCSVLKQENENIVSHFVSEQNDA 402
Query: 298 IRL----NSP----------GQLLPTVNKKQDYDGFFYSLFQKRKE 329
+ N P QL P N +DGF+Y+L +K ++
Sbjct: 403 RHIPLDNNQPVTWGVERPFGRQLFPQENG---HDGFYYALLEKTRD 445
>gi|85060226|ref|YP_455928.1| 16S rRNA methyltransferase B [Sodalis glossinidius str.
'morsitans']
gi|123738922|sp|Q2NQQ2.1|RSMB_SODGM RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|84780746|dbj|BAE75523.1| putative rRNA methylase [Sodalis glossinidius str. 'morsitans']
Length = 433
Score = 194 bits (494), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 113/335 (33%), Positives = 185/335 (55%), Gaps = 40/335 (11%)
Query: 1 MINAILREFLRKKGEIF----KSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVG 56
+IN +LR+F R++ + + + ++H P W ++ +P Q+ I+D
Sbjct: 117 LINGVLRQFQRQQPALLADAERQDIRHLH------PSWLQKRILAAWPA--QYAQIIDAN 168
Query: 57 HKKPPLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFC 114
+++PP+ LR+N+ + +Y LL + + P AI+L P ++ ++P F G+
Sbjct: 169 NQRPPMWLRVNRLHHSRDAYLALLAGTDIAAVAHSQLPDAIRLEMPCNVGRLPGFDRGWV 228
Query: 115 SIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADI-KLISVDNNLSRLNMISE 173
++QDA+AQ A LL ++ +LD C+APGGKT H+LEIA ++++VD + R I +
Sbjct: 229 TVQDASAQGCALLLAPQNSETILDLCAAPGGKTTHILEIAPAARVMAVDVDGQRAARIHD 288
Query: 174 NLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVR 233
NL+RL ++A +++ D +T + +R FDRIL D PC+ +GV+R
Sbjct: 289 NLQRLGMQAEVVIGD--------------GRTPDAWR--SGMLFDRILLDAPCSATGVIR 332
Query: 234 RNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKN 293
R+PDI WLRR DI +L++ +IL W++LK GG LL+ TCS+ EE+ Q F +
Sbjct: 333 RHPDIKWLRRDGDIAELAELQRQILCAAWRVLKLGGTLLYATCSILPEENRGQIAAFLAD 392
Query: 294 HKDSI-----RLNSPG-QLLPTVNKKQDYDGFFYS 322
H D++ +PG Q LP DGFFY+
Sbjct: 393 HPDALLQETGDAAAPGLQCLPVPTSG---DGFFYA 424
>gi|37528514|ref|NP_931859.1| 16S rRNA methyltransferase B [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|46396778|sp|Q7MYI0.1|RSMB_PHOLL RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|36787952|emb|CAE17069.1| RsmB protein (SUN/FMU protein), 16S RNA m5C967 methyltransferase
[Photorhabdus luminescens subsp. laumondii TTO1]
Length = 429
Score = 194 bits (494), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 110/310 (35%), Positives = 177/310 (57%), Gaps = 30/310 (9%)
Query: 27 SYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPPLTLRINQRKTTLISYNKLLKKSGL- 85
S+ +P W + +++ YP QW+ +++ +KKPP+ LR+N+ + Y LL+KSG+
Sbjct: 141 SHHLHPEWLLTRIQKAYPQ--QWQQLINANNKKPPMWLRVNRIYHSRDEYLTLLRKSGID 198
Query: 86 -ETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPG 144
E P AI++ +P ++ +P F G+ ++QD +AQ LL +G +LD C+APG
Sbjct: 199 AEPAPKSPSAIRIISPCPVTILPGFDKGWVTVQDLSAQECVELLKPINGEKILDLCAAPG 258
Query: 145 GKTCHLLEIA-DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINK 203
GKT ++LEIA + ++++VD + R+ + ENLKRLN AT+ D
Sbjct: 259 GKTTYILEIAPESQVVAVDIDEQRIKRVKENLKRLNCHATVKTGD--------------- 303
Query: 204 KTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWK 263
+ + +N+ FDRIL D PC+ +GV+RR+PDI WLRR+ DI +L + +IL+ +W
Sbjct: 304 -GRHPEHWAENQQFDRILLDAPCSATGVIRRHPDIKWLRREEDIAQLVQLQSEILDAIWP 362
Query: 264 MLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPG------QLLPTVNKKQDYD 317
LK G L++ TCS+ +E+ +Q F K H D+ + Q++P +N D
Sbjct: 363 YLKKSGTLVYATCSILPDENCQQISSFLKRHSDAKLAGTETNDCLGKQIIPELNGG---D 419
Query: 318 GFFYSLFQKR 327
GFFY+ KR
Sbjct: 420 GFFYARLTKR 429
>gi|418294657|ref|ZP_12906545.1| 16S rRNA methyltransferase B [Pseudomonas stutzeri ATCC 14405 =
CCUG 16156]
gi|379066028|gb|EHY78771.1| 16S rRNA methyltransferase B [Pseudomonas stutzeri ATCC 14405 =
CCUG 16156]
Length = 440
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 118/339 (34%), Positives = 176/339 (51%), Gaps = 42/339 (12%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ GE +++ + +P W +K +P W+++ + P
Sbjct: 113 LLNAVLRRAQRE-GEALLAELEHDPVIRVAHPRWLQKALKAHWPE--HWESVCAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLET-----TIIGPLAIKLHTPISISKIPKFFNGFCS 115
P+ LR+N+R+ + Y L+ + +E ++ G I+L TP + ++P F G S
Sbjct: 170 PMMLRVNRRQVSRDGYLAELQSADIEAHPCEFSVDG---IRLVTPCDVHQLPGFAEGRVS 226
Query: 116 IQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISE 173
+QD AAQLAA LLD+ G VLDAC APGGKTCHLLE +LI++D RL + E
Sbjct: 227 VQDEAAQLAASLLDLAPGQRVLDACCAPGGKTCHLLEREPQLAELIALDLEPKRLVRVRE 286
Query: 174 NLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVR 233
NL RL L A L+ D R++ K F RIL D PC+ +GV+R
Sbjct: 287 NLDRLQLSAQLVADDARATE----------------RWWDGKPFQRILLDAPCSATGVIR 330
Query: 234 RNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKN 293
R+PDI R+ +DI L+ ++L+ LW L+ GG LL+ TCS+ E+ E F +
Sbjct: 331 RHPDIKLTRQADDIAPLAALQGEMLDALWPTLEVGGVLLYATCSVLPTENREVIGAFLER 390
Query: 294 HKDSIRLNSPG----------QLLPTVNKKQDYDGFFYS 322
+ L+ PG QLLP N +DGF+Y+
Sbjct: 391 TPGARELDLPGSFGLAQAHGRQLLPQENG---HDGFYYA 426
>gi|152985582|ref|YP_001345414.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
aeruginosa PA7]
gi|150960740|gb|ABR82765.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
aeruginosa PA7]
Length = 434
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 113/336 (33%), Positives = 177/336 (52%), Gaps = 36/336 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ GE +++ + +P W + ++ +P Q + + + P
Sbjct: 113 VLNAVLRRAQRE-GETLLAEVDRDPSARLGHPRWLLKALQQAWPE--QLEALCAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTII--GPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+TLR+N+R +Y L ++G+E I+L P + ++P F G S+QD
Sbjct: 170 PMTLRVNRRHGERDTYLAELAEAGIEARACDYSRDGIQLAAPRDVRELPGFAEGRVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQLAA LL+ G VLDAC APGGKTCHLLEI ++++VD SRL + ENL+
Sbjct: 230 EAAQLAAELLESAPGQRVLDACCAPGGKTCHLLEIQPELGEVVAVDLEQSRLLRVRENLQ 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L+A L+ +D ++ + F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLEARLVAADARATG----------------EWWDGQPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ +DI L++ ++L+ LW L+ GG L++ TCS+ E+ + F
Sbjct: 334 DIKLARKPDDIAALAQLQGELLDALWPTLEVGGVLVYATCSVMPSENSDGIAAFLARTPG 393
Query: 297 SIRLNSPG----------QLLPTVNKKQDYDGFFYS 322
+ L+ PG QLLP V+ +DGF+Y+
Sbjct: 394 ARELDLPGPWGMKQAHGRQLLPQVDG---HDGFYYA 426
>gi|424943602|ref|ZP_18359365.1| putative tRNA and rRNA cytosine-C5-methylases [Pseudomonas
aeruginosa NCMG1179]
gi|346060048|dbj|GAA19931.1| putative tRNA and rRNA cytosine-C5-methylases [Pseudomonas
aeruginosa NCMG1179]
Length = 434
Score = 194 bits (493), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 114/336 (33%), Positives = 174/336 (51%), Gaps = 36/336 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ GE +++ + +P W + +K +P Q + + P
Sbjct: 113 VLNAVLRRAQRE-GETLLAEVDRDPSARLGHPRWLLKALKQAWPE--QLDALCAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTII--GPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+TLR+N+R +Y L ++G++ I+L P + ++P F G S+QD
Sbjct: 170 PMTLRVNRRHGERDAYLAELAEAGIKARACDYSRDGIQLAAPRDVRELPGFAEGRVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQLAA LL+ G VLDAC APGGKTCHLLE ++++VD SRL + ENL+
Sbjct: 230 EAAQLAAELLESAPGQRVLDACCAPGGKTCHLLETQPELAEVVAVDLEESRLVRVRENLQ 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L+A+L+ +D ++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLQASLVAADARATG----------------EWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ DI L+ ++L+ LW L+ GG LL+ TCS+ E+ + F
Sbjct: 334 DIKLARKPEDIAALAHLQGELLDALWPTLEVGGVLLYATCSVMPAENSDSIAAFLARTPG 393
Query: 297 SIRLNSPG----------QLLPTVNKKQDYDGFFYS 322
+ L+ PG QLLP V + +DGF+Y+
Sbjct: 394 ARELDLPGPWGMKQPHGRQLLPQV---EGHDGFYYA 426
>gi|416866944|ref|ZP_11915970.1| 16S rRNA methyltransferase B [Pseudomonas aeruginosa 138244]
gi|334833889|gb|EGM12914.1| 16S rRNA methyltransferase B [Pseudomonas aeruginosa 138244]
gi|453044697|gb|EME92419.1| 16S rRNA methyltransferase B [Pseudomonas aeruginosa PA21_ST175]
Length = 434
Score = 194 bits (493), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 114/336 (33%), Positives = 174/336 (51%), Gaps = 36/336 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ GE +++ + +P W + +K +P Q + + P
Sbjct: 113 VLNAVLRRAQRE-GETLLAEVDRDPSARLGHPRWLLKALKQAWPE--QLDALCAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTII--GPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+TLR+N+R +Y L ++G++ I+L P + ++P F G S+QD
Sbjct: 170 PMTLRVNRRHGERDAYLAELAEAGIKARACDYSRDGIQLAAPRDVRELPGFAEGRVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQLAA LL+ G VLDAC APGGKTCHLLE ++++VD SRL + ENL+
Sbjct: 230 EAAQLAAELLESAPGQRVLDACCAPGGKTCHLLETQPGLAEVVAVDLEESRLVRVRENLQ 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L+A+L+ +D ++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLQASLVAADARATG----------------EWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ DI L+ ++L+ LW L+ GG LL+ TCS+ E+ + F
Sbjct: 334 DIKLARKPEDIAALAHLQGELLDALWPTLEVGGVLLYATCSVMPAENSDSIAAFLARTPG 393
Query: 297 SIRLNSPG----------QLLPTVNKKQDYDGFFYS 322
+ L+ PG QLLP V + +DGF+Y+
Sbjct: 394 ARELDLPGPWGMKQPHGRQLLPQV---EGHDGFYYA 426
>gi|107099010|ref|ZP_01362928.1| hypothetical protein PaerPA_01000017 [Pseudomonas aeruginosa PACS2]
gi|218888763|ref|YP_002437627.1| putative tRNA and rRNA cytosine-C5-methylases [Pseudomonas
aeruginosa LESB58]
gi|451983639|ref|ZP_21931915.1| Ribosomal RNA small subunit methyltransferase B [Pseudomonas
aeruginosa 18A]
gi|218768986|emb|CAW24744.1| putative tRNA and rRNA cytosine-C5-methylases [Pseudomonas
aeruginosa LESB58]
gi|451758585|emb|CCQ84438.1| Ribosomal RNA small subunit methyltransferase B [Pseudomonas
aeruginosa 18A]
Length = 434
Score = 194 bits (493), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 114/336 (33%), Positives = 174/336 (51%), Gaps = 36/336 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ GE +++ + +P W + +K +P Q + + P
Sbjct: 113 VLNAVLRRAQRE-GETLLAEVDRDPSARLGHPRWLLKALKQAWPE--QLDALCAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTII--GPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+TLR+N+R +Y L ++G++ I+L P + ++P F G S+QD
Sbjct: 170 PMTLRVNRRHGERDAYLAELAEAGIKARACDYSRDGIQLAAPRDVRELPGFAEGRVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQLAA LL+ G VLDAC APGGKTCHLLE ++++VD SRL + ENL+
Sbjct: 230 EAAQLAAELLESAPGQRVLDACCAPGGKTCHLLETQPGLAEVVAVDLEESRLVRVRENLQ 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L+A+L+ +D ++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLQASLVAADARATG----------------EWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ DI L+ ++L+ LW L+ GG LL+ TCS+ E+ + F
Sbjct: 334 DIKLARKPEDIAALAHLQGELLDALWPTLEVGGVLLYATCSVMPAENSDSIAAFLARTPG 393
Query: 297 SIRLNSPG----------QLLPTVNKKQDYDGFFYS 322
+ L+ PG QLLP V + +DGF+Y+
Sbjct: 394 ARELDLPGPWGMKQPHGRQLLPQV---EGHDGFYYA 426
>gi|254490995|ref|ZP_05104176.1| ribosomal RNA small subunit methyltransferase B [Methylophaga
thiooxidans DMS010]
gi|224463508|gb|EEF79776.1| ribosomal RNA small subunit methyltransferase B [Methylophaga
thiooxydans DMS010]
Length = 406
Score = 194 bits (493), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 108/337 (32%), Positives = 180/337 (53%), Gaps = 29/337 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA LR + R+ E+ +N +P W + Q + +P+ W+ I +++
Sbjct: 89 LLNACLRNYQRQHTELEAQLQHNPVAGT-AHPEWLLQQYQSDWPD--HWQQITQANNQQA 145
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+++ + +Y + L + + T + + L ++ +P F G S+QD
Sbjct: 146 PMMLRVNRQQASRETYLQQLLQQDIGATALRDCDDGVLLSKAYDVNALPNFETGMASVQD 205
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEI-ADIKLISVDNNLSRLNMISENLKR 177
AAQL +LDI+ ++LDAC+APGGK+CH+LE D L+++D + RL I +NL R
Sbjct: 206 GAAQLVVKMLDIQPDQHILDACAAPGGKSCHILEQHPDNTLVALDISAERLKQIEQNLSR 265
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L A L +D S + ++ + FDRIL D PC+GSGV+RR+PD
Sbjct: 266 LQLGAQLKAADASDTDA----------------WWDGELFDRILIDAPCSGSGVIRRHPD 309
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I LRR DI L+ ++L+ LW +LK G +++ TCS + +E+E+Q F + H D+
Sbjct: 310 IKLLRRPEDITSLAHTQQQLLDKLWPLLKADGLMVYTTCSAFKKENEQQIEAFLQRHPDA 369
Query: 298 IRL---NSPGQLLPTVNKK----QDYDGFFYSLFQKR 327
L +P P ++ DGF+Y+ ++R
Sbjct: 370 KELRFEQAPATARPYGYQRLPGDDVMDGFYYACLRRR 406
>gi|423199139|ref|ZP_17185722.1| ribosomal RNA small subunit methyltransferase B [Aeromonas
hydrophila SSU]
gi|404629493|gb|EKB26240.1| ribosomal RNA small subunit methyltransferase B [Aeromonas
hydrophila SSU]
Length = 430
Score = 194 bits (493), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 116/337 (34%), Positives = 181/337 (53%), Gaps = 29/337 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR F R E+ ++ + +P W +++ YP+ +W+ I++ +++P
Sbjct: 113 LINGVLRNFQRS-AEVILLRIDRVPSVRLGHPEWLTKRLRQAYPD--EWEFIMEANNQRP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTI--IGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ +R N ++ + + +G+ G I L P ++K+P F G CS+QD
Sbjct: 170 PMWIRNNSQRQSREQMLARMADAGINAVAGEEGEDCILLERPCDVTKLPGFEAGDCSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE--IADIKLISVDNNLSRLNMISENLK 176
AAQ AA LLD + G +VLDAC+APGGKT HLLE A +++VD + +RL + ENL
Sbjct: 230 GAAQQAAALLDPQPGEWVLDACAAPGGKTAHLLERQPALAGVVAVDADENRLKRVQENLD 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
R+ L A +I D S + +++ FDRIL D PC+ +GV+RR+P
Sbjct: 290 RIGLNAKVIHGDASTPD----------------QWWPEGQFDRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLRR DI++L++ +IL LW LK GG LL+ TCS+ EE+ +Q F D
Sbjct: 334 DIKWLRRDQDIRELAELQRRILGALWSKLKSGGTLLYATCSVLPEENRDQIRAFLAATPD 393
Query: 297 SIRLNSPGQLLPTVNKKQ------DYDGFFYSLFQKR 327
+ + + P +Q + DGF+Y+ KR
Sbjct: 394 ATLVPMHAEDTPECPGRQFLPGEAEMDGFYYARLSKR 430
>gi|262089741|gb|ACY24835.1| ribosomal RNA small subunit methyltransferase B [uncultured
organism]
Length = 430
Score = 194 bits (492), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 115/335 (34%), Positives = 180/335 (53%), Gaps = 36/335 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++N +LR+F R K ++ K N + N+P W ++ +PN Q I+ + P
Sbjct: 114 LVNGVLRKFQRDKSKLDKLLAQN-YSFQTNHPAWIEATLRKNWPN--QLDQIIAANNSHP 170
Query: 61 PLTLRINQRKTTLISYNKLLK--KSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P TLRIN +K + Y LL+ + T P I L K+P F +G+ S+QD
Sbjct: 171 PFTLRINTQKISRAEYLALLQDLEINAAATPFSPYGITLEHACDPRKLPLFSDGWVSVQD 230
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
AAQL+A LL + + VLDAC APGGKT H+LE+ + + ++D + RL+ + ENL R
Sbjct: 231 EAAQLSADLLQLSPKLRVLDACCAPGGKTGHMLEVEPSLHVTALDADERRLSRVRENLTR 290
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L + A ++ D +K + ++ + FDRIL D PC+ +G++RR+PD
Sbjct: 291 LGVNANVLCGDGTKTD-----------------WWDGELFDRILLDAPCSATGIIRRHPD 333
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I LR +++ KL + K+LNNLW +LKPGG L++ TCS+ +E+ + F K +D+
Sbjct: 334 IKVLRTPDELDKLGELQAKLLNNLWSLLKPGGVLIYATCSVMPKENTQVIEAFLKRKRDA 393
Query: 298 ----------IRLNSPGQLLPTVNKKQDYDGFFYS 322
I QLLP+ + +DGF+Y+
Sbjct: 394 TCDLLDASWGIEQAYGRQLLPST---EGHDGFYYA 425
>gi|431925230|ref|YP_007238264.1| 16S rRNA m(5)C967 methyltransferase [Pseudomonas stutzeri RCH2]
gi|431823517|gb|AGA84634.1| 16S rRNA m(5)C-967 methyltransferase [Pseudomonas stutzeri RCH2]
Length = 440
Score = 194 bits (492), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 174/333 (52%), Gaps = 30/333 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ GE +++ + +P W +K +P W+ I + P
Sbjct: 113 LLNAVLRRAQRE-GEALLAELEHDPVIRVAHPRWLQKALKAHWPE--HWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLET--TIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R+ + Y L+ +G+E I+L P + ++P F G S+QD
Sbjct: 170 PMMLRVNRRQVSRDGYLAELQGAGIEAHPCEFSEDGIRLAAPCDVHQLPGFAEGRVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQLAA LLD+ G VLDAC APGGKTCHLLE L+++D RL + ENL+
Sbjct: 230 EAAQLAASLLDLAPGQRVLDACCAPGGKTCHLLEREPQLAGLVALDLEPKRLLRVRENLE 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL+L+A L+ D R++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLHLQAELVADDARATE----------------RWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ +DI L+ ++L+ LW L+ GG LL+ TCS+ E+ E F +
Sbjct: 334 DIKLTRQADDIAPLAALQGEMLDALWPTLEVGGVLLYATCSVLPTENREVIAAFLERTPG 393
Query: 297 SIRLNSPGQL-LPTVNKKQ------DYDGFFYS 322
+ L+ G LP ++ +Q +DGF+Y+
Sbjct: 394 ARELDLAGGFGLPQMHGRQLLPQESGHDGFYYA 426
>gi|410634870|ref|ZP_11345497.1| ribosomal RNA small subunit methyltransferase B [Glaciecola
lipolytica E3]
gi|410145614|dbj|GAC12702.1| ribosomal RNA small subunit methyltransferase B [Glaciecola
lipolytica E3]
Length = 442
Score = 193 bits (491), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 115/335 (34%), Positives = 185/335 (55%), Gaps = 37/335 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR F+R++ + K + P W +++ YP+ Q + + + ++P
Sbjct: 127 LVNALLRNFIRQELDKQDIKEPQVRSGL---PKWLFKRLQAAYPD--QLEALCEEMQQRP 181
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLA--IKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N++ Y LL + G+ + + + L I+++P + G ++QD
Sbjct: 182 PIWLRVNRQVIDKDKYLALLDEQGVACELSSEHSDGLILQKSQDITQLPGYQQGMFAVQD 241
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQLAA L+ + G VLD C+APGGKTCH+LE K I++D + SRL+ + ENL
Sbjct: 242 GAAQLAAAYLNAQEGDLVLDCCAAPGGKTCHILERQPNLSKCIALDIDDSRLDRVRENLS 301
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RLNLKA L+ +D ++ ++ FDRIL D PC+ +GV+RR+P
Sbjct: 302 RLNLKADLVAADATQTE----------------SWWDGVLFDRILLDAPCSATGVIRRHP 345
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR+ DI L +IL+ +W++LKPGG LL+ TCS+ EE+ Q F +N+ D
Sbjct: 346 DIKWLRKNADIDTLVTLQRQILDTMWRILKPGGTLLYATCSILPEENYLQINAFLQNNPD 405
Query: 297 SIRL--------NSPG-QLLPTVNKKQDYDGFFYS 322
+ + +PG Q+LP ++ DGF+Y+
Sbjct: 406 ASLIPVCNETENANPGRQILPG---EKQMDGFYYA 437
>gi|117618823|ref|YP_854784.1| ribosomal RNA small subunit methyltransferase B [Aeromonas
hydrophila subsp. hydrophila ATCC 7966]
gi|117560230|gb|ABK37178.1| ribosomal RNA small subunit methyltransferase B [Aeromonas
hydrophila subsp. hydrophila ATCC 7966]
Length = 430
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 118/337 (35%), Positives = 182/337 (54%), Gaps = 29/337 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR F R E+ ++ + +P W +++ YP+ +W+ I++ +++P
Sbjct: 113 LINGVLRNFQRS-AEVILLRIDRVPSIRLGHPEWLTKRLRQAYPD--EWEFIMEANNQRP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTI--IGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ +R N ++ + + ++G+ G I L P ++K+P F G CS+QD
Sbjct: 170 PMWIRNNSQRQSREQMLVRMAEAGINAMAGEEGEDCILLERPCDVTKLPGFEAGDCSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE--IADIKLISVDNNLSRLNMISENLK 176
AAQ AA LLD + G +VLDAC+APGGKT HLLE A +++VD + +RL + ENL
Sbjct: 230 GAAQQAAALLDPQPGEWVLDACAAPGGKTAHLLERQPALAGVVAVDADDNRLKRVQENLD 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
R+ L A +I D S +L ++ FDRIL D PC+ +GV+RR+P
Sbjct: 290 RIGLTAKVIHGDASTPDL----------------WWPEGQFDRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLRR DI++L++ +IL LW LK GG LL+ TCS+ EE+ +Q F D
Sbjct: 334 DIKWLRRDQDIRELAELQHRILGALWSKLKSGGTLLYATCSVLPEENRDQIRAFLAATPD 393
Query: 297 SIRLNSPGQLLPTVNKKQ------DYDGFFYSLFQKR 327
+ + Q P +Q + DGF+Y+ KR
Sbjct: 394 ATLVPLHAQDTPECPGRQFLPGEAEMDGFYYAKLIKR 430
>gi|392419118|ref|YP_006455722.1| 16S rRNA methyltransferase B [Pseudomonas stutzeri CCUG 29243]
gi|390981306|gb|AFM31299.1| 16S rRNA methyltransferase B [Pseudomonas stutzeri CCUG 29243]
Length = 440
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 116/336 (34%), Positives = 175/336 (52%), Gaps = 36/336 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ GE +++ + +P W +K +P W+ I + P
Sbjct: 113 LLNAVLRRAQRE-GEAMLAELEHDPVIRVAHPRWLQKALKAHWPE--HWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLET--TIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R+ + +Y L+ +G++ I+L P + ++P F G S+QD
Sbjct: 170 PMMLRVNRRQVSRDAYLAELQAAGIDAHPCEFSEDGIRLVAPCDVHQLPGFAEGRVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQLAA LLD+ G VLDAC APGGKTCHLLE LI++D RL + ENL+
Sbjct: 230 EAAQLAASLLDLAPGQRVLDACCAPGGKTCHLLEREPQLAGLIALDLEPKRLVRVRENLE 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL+L+A L+ D R++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLHLQAELVADDARATE----------------RWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ +DI L+ ++L+ LW L GG LL+ TCS+ E+ E F +
Sbjct: 334 DIKLTRQADDIAPLAALQGEMLDALWPTLDVGGILLYATCSVLPTENREVIGAFLERTPG 393
Query: 297 SIRLNSPG----------QLLPTVNKKQDYDGFFYS 322
+ L+ PG QLLP ++ +DGF+Y+
Sbjct: 394 ARELDLPGGFGLQQPHGRQLLP---QESGHDGFYYA 426
>gi|411011232|ref|ZP_11387561.1| 16S rRNA methyltransferase B [Aeromonas aquariorum AAK1]
Length = 430
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 116/337 (34%), Positives = 181/337 (53%), Gaps = 29/337 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR F R E+ ++ + +P W +++ YP+ +W+ I++ +++P
Sbjct: 113 LINGVLRNFQRS-AEVILLRIDRVPSVRLGHPEWLTKRLRQAYPD--EWEFIMEANNQRP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTI--IGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ +R N ++ + + +G+ G I L P ++K+P F G CS+QD
Sbjct: 170 PMWIRNNSQRQSREQMLARMADAGINAVAGEEGEDCILLERPCDVTKLPGFEVGDCSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE--IADIKLISVDNNLSRLNMISENLK 176
AAQ AA LLD + G +VLDAC+APGGKT HLLE A +++VD + +RL + ENL
Sbjct: 230 GAAQQAAALLDPQPGEWVLDACAAPGGKTAHLLERQPALAGVVAVDADENRLKRVQENLD 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
R+ L A +I D S + +++ FDRIL D PC+ +GV+RR+P
Sbjct: 290 RIGLNAKVIHGDASTPD----------------QWWPEGQFDRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLRR DI++L++ +IL LW LK GG LL+ TCS+ EE+ +Q F D
Sbjct: 334 DIKWLRRDQDIRELAELQRRILGALWSKLKSGGTLLYATCSVLPEENRDQIRAFLAATPD 393
Query: 297 SIRLNSPGQLLPTVNKKQ------DYDGFFYSLFQKR 327
+ + + P +Q + DGF+Y+ KR
Sbjct: 394 ATLVPLHAEDTPECPGRQFLPGEAEMDGFYYARLSKR 430
>gi|444976632|ref|ZP_21293729.1| ribosomal RNA small subunit methyltransferase B, partial
[Escherichia coli 99.1805]
gi|444591455|gb|ELV66742.1| ribosomal RNA small subunit methyltransferase B, partial
[Escherichia coli 99.1805]
Length = 284
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 106/302 (35%), Positives = 179/302 (59%), Gaps = 34/302 (11%)
Query: 32 PIWWINQVKITYPNFFQWKNILDVGHKKPPLTLRINQRKTTLISYNKLLKKSGLETTIIG 91
P W + +++ YP QW++I++ +++PP+ LRIN+ + ++ LL ++G++
Sbjct: 1 PSWLLKRLQKAYPE--QWQSIVEANNQRPPMWLRINRTHHSRDTWLALLDEAGMKGFPHA 58
Query: 92 --PLAIKLHTPISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCH 149
P A++L TP + +P F +G+ ++QDA+AQ L ++G ++LD C+APGGKT H
Sbjct: 59 DYPDAVRLETPAPVHALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTH 118
Query: 150 LLEIA-DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNR 208
+LE+A + ++++VD + RL+ + +NLKRL +KAT+ K+ + R
Sbjct: 119 ILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATV------------------KQGDGR 160
Query: 209 F--RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLK 266
+ ++ + FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK
Sbjct: 161 YPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLK 220
Query: 267 PGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFF 320
GG L++ TCS+ EE+ Q F + D+ + PG Q LP ++ DGFF
Sbjct: 221 SGGTLVYATCSVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFF 277
Query: 321 YS 322
Y+
Sbjct: 278 YA 279
>gi|421502975|ref|ZP_15949927.1| 16S rRNA methyltransferase B [Pseudomonas mendocina DLHK]
gi|400346432|gb|EJO94790.1| 16S rRNA methyltransferase B [Pseudomonas mendocina DLHK]
Length = 437
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 114/336 (33%), Positives = 175/336 (52%), Gaps = 36/336 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ +F +++ + +P W +K +P W+ I + P
Sbjct: 113 LLNAVLRRAQREHEALF-AELDRDPVLHTAHPRWLQKTLKAHWPE--HWQAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGL--ETTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
PL LR+N+R + +Y + L+ +G E ++L P ++ +P F G S+QD
Sbjct: 170 PLILRVNRRHGSRDAYLEELRGAGFAAEPCTFSRDGVRLLQPCDVTALPGFKEGRVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEI--ADIKLISVDNNLSRLNMISENLK 176
AAQLAA LL++ G VLDAC+APGGKTCHLLE A ++++VD RL + ENL+
Sbjct: 230 EAAQLAADLLELAPGQRVLDACAAPGGKTCHLLEAEPALAEVVAVDLEEKRLARVRENLQ 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L+A LI +D + ++ F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLEARLIAADGRATKV----------------WWDGTPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ DI L++ ++L+ LW L PGG LL+ TCS+ E+ E F D
Sbjct: 334 DIKLTRKPEDIPALAQLQGELLDALWPTLAPGGILLYATCSVLPTENSETIAAFLARTPD 393
Query: 297 SIRLNSPG----------QLLPTVNKKQDYDGFFYS 322
+ + G QLLP ++ +DGF+Y+
Sbjct: 394 AQEVAIGGDFGLQAAHGRQLLPQLD---GHDGFYYA 426
>gi|330500985|ref|YP_004377854.1| sun protein [Pseudomonas mendocina NK-01]
gi|328915271|gb|AEB56102.1| sun protein [Pseudomonas mendocina NK-01]
Length = 437
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 113/336 (33%), Positives = 176/336 (52%), Gaps = 36/336 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ +F +++ + +P W +K +P W+ I + P
Sbjct: 113 LLNAVLRRAQREHEALF-AELDRDPVLHTAHPRWLQKTLKAHWPE--HWQAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGL--ETTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
PL LR+N+R + +Y + L+ +G E ++L P ++ +P F G S+QD
Sbjct: 170 PLILRVNRRHGSRDAYLEELRNAGFAAEPCTFSRDGVRLLQPCDVTALPGFKEGRVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQLAA LL++ G VLDAC+APGGKTCHLLE+ ++++VD RL + ENL+
Sbjct: 230 EAAQLAADLLELTPGQRVLDACAAPGGKTCHLLEVEPGLSQVVAVDLEAKRLARVRENLE 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L+ATLI +D + ++ + F RIL D PC+ +GV+RR+P
Sbjct: 290 RLQLEATLIAAD----------------GRDTAAWWDGQPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ DI L++ ++L+ LW L GG LL+ TCS+ E+ E F D
Sbjct: 334 DIKLTRKPEDIPALAQLQGELLDALWPTLAQGGILLYATCSVLPTENSETIAAFLARTVD 393
Query: 297 SIRLNSPG----------QLLPTVNKKQDYDGFFYS 322
+ + G QLLP ++ +DGF+Y+
Sbjct: 394 AREIAIEGDFGLQPAHGRQLLPQLDG---HDGFYYA 426
>gi|49088860|gb|AAT51614.1| PA0017, partial [synthetic construct]
Length = 435
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 113/336 (33%), Positives = 173/336 (51%), Gaps = 36/336 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ GE +++ + +P W + +K +P Q + + P
Sbjct: 113 VLNAVLRRAQRE-GETLLAEVDRDPSARLGHPRWLLKALKQAWPE--QLDALCAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTII--GPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+TLR+N+R +Y L ++G++ I+L P + ++P F G S+QD
Sbjct: 170 PMTLRVNRRHGERDAYLAELAEAGIKARACDYSRDGIQLAAPRDVRELPGFAEGRVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQLAA L+ G VLDAC APGGKTCHLLE ++++VD SRL + ENL+
Sbjct: 230 EAAQLAAEQLESAPGQRVLDACCAPGGKTCHLLETQPELAEVVAVDLEESRLVRVRENLQ 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L+A+L+ +D ++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLQASLVAADARATG----------------EWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ DI L+ ++L+ LW L+ GG LL+ TCS+ E+ + F
Sbjct: 334 DIKLARKPEDIAALAHLQGELLDALWPTLEVGGVLLYATCSVMPAENSDSIAAFLARTPG 393
Query: 297 SIRLNSPG----------QLLPTVNKKQDYDGFFYS 322
+ L+ PG QLLP V + +DGF+Y+
Sbjct: 394 ARELDLPGPWGMKQPHGRQLLPQV---EGHDGFYYA 426
>gi|399010725|ref|ZP_10713085.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM17]
gi|398106087|gb|EJL96141.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM17]
Length = 388
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 115/338 (34%), Positives = 173/338 (51%), Gaps = 35/338 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR R+ +F +++ +P W +K +P QW+ I + P
Sbjct: 60 LINAVLRRAQRESEALF-AELERDPVVRTAHPRWLQKSLKAFWPE--QWEAICAANNAHP 116
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLET--TIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R + +Y +LL ++G+ + I L + +P F G+ S+QD
Sbjct: 117 PMILRVNRRHHSRAAYLQLLSEAGVAAKPCVYSQDGIVLDEAADVRALPGFAEGWISVQD 176
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEI--ADIKLISVDNNLSRLNMISENLK 176
AAQLAA LL++ G VLDAC APGGKTCH+LE+ A +++VD RL + ENL
Sbjct: 177 EAAQLAAELLELAPGQRVLDACCAPGGKTCHILEVEPALAGMVAVDLEAKRLVRVQENLD 236
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RLNL+A LI +D + ++ K F RIL D PC+ +GV+RR+P
Sbjct: 237 RLNLRAELIAAD----------------GRDTAAWWDGKPFQRILLDAPCSATGVIRRHP 280
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ +DI L+ ++L+ +W L+ GG LL+ TCS E+ E F
Sbjct: 281 DIKLTRQADDIAALASLQGELLDAMWSTLEVGGILLYATCSTLPTENTEVIEAFLARTPG 340
Query: 297 SIRLNSPGQL-LPTVNKKQ-----------DYDGFFYS 322
+ L+ GQL P KQ +DGF+Y+
Sbjct: 341 ARELDIAGQLGQPPAGLKQPHGRQLLAQEGGHDGFYYA 378
>gi|15595215|ref|NP_248707.1| hypothetical protein PA0017 [Pseudomonas aeruginosa PAO1]
gi|386056088|ref|YP_005972610.1| putative tRNA and rRNA cytosine-C5-methylase [Pseudomonas
aeruginosa M18]
gi|418587867|ref|ZP_13151888.1| 16S rRNA methyltransferase B [Pseudomonas aeruginosa MPAO1/P1]
gi|418591626|ref|ZP_13155522.1| 16S rRNA methyltransferase B [Pseudomonas aeruginosa MPAO1/P2]
gi|421156962|ref|ZP_15616381.1| hypothetical protein PABE173_0014 [Pseudomonas aeruginosa ATCC
25324]
gi|421514623|ref|ZP_15961309.1| 16S rRNA methyltransferase B [Pseudomonas aeruginosa PAO579]
gi|46397033|sp|Q9I7A9.1|RSMB_PSEAE RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|9945836|gb|AAG03407.1|AE004441_8 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
gi|347302394|gb|AEO72508.1| putative tRNA and rRNA cytosine-C5-methylase [Pseudomonas
aeruginosa M18]
gi|375041379|gb|EHS34080.1| 16S rRNA methyltransferase B [Pseudomonas aeruginosa MPAO1/P1]
gi|375049685|gb|EHS42176.1| 16S rRNA methyltransferase B [Pseudomonas aeruginosa MPAO1/P2]
gi|404348351|gb|EJZ74688.1| 16S rRNA methyltransferase B [Pseudomonas aeruginosa PAO579]
gi|404551098|gb|EKA59785.1| hypothetical protein PABE173_0014 [Pseudomonas aeruginosa ATCC
25324]
Length = 434
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 113/336 (33%), Positives = 173/336 (51%), Gaps = 36/336 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ GE +++ + +P W + +K +P Q + + P
Sbjct: 113 VLNAVLRRAQRE-GETLLAEVDRDPSARLGHPRWLLKALKQAWPE--QLDALCAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTII--GPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+TLR+N+R +Y L ++G++ I+L P + ++P F G S+QD
Sbjct: 170 PMTLRVNRRHGERDAYLAELAEAGIKARACDYSRDGIQLAAPRDVRELPGFAEGRVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQLAA L+ G VLDAC APGGKTCHLLE ++++VD SRL + ENL+
Sbjct: 230 EAAQLAAEQLESAPGQRVLDACCAPGGKTCHLLETQPELAEVVAVDLEESRLVRVRENLQ 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L+A+L+ +D ++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLQASLVAADARATG----------------EWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ DI L+ ++L+ LW L+ GG LL+ TCS+ E+ + F
Sbjct: 334 DIKLARKPEDIAALAHLQGELLDALWPTLEVGGVLLYATCSVMPAENSDSIAAFLARTPG 393
Query: 297 SIRLNSPG----------QLLPTVNKKQDYDGFFYS 322
+ L+ PG QLLP V + +DGF+Y+
Sbjct: 394 ARELDLPGPWGMKQPHGRQLLPQV---EGHDGFYYA 426
>gi|345863827|ref|ZP_08816035.1| ribosomal RNA small subunit methyltransferase B [endosymbiont of
Tevnia jerichonana (vent Tica)]
gi|345125153|gb|EGW55025.1| ribosomal RNA small subunit methyltransferase B [endosymbiont of
Tevnia jerichonana (vent Tica)]
Length = 443
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 115/344 (33%), Positives = 188/344 (54%), Gaps = 45/344 (13%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR F R++ + + K+ S + P W + +++ +P+ W+ + +P
Sbjct: 124 LINGVLRNFQRQQA-VLQEKVDRQPSSRYAMPDWLLQRIEQRWPD--SWQERIAALSARP 180
Query: 61 PLTLRINQRKTTLISYNKLL--KKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P++LRIN R+ Y + L ++ E + L P+ + ++P F +G S+QD
Sbjct: 181 PMSLRINCRQVDRGDYLERLWEQQITAEPVPHTESGLTLQRPVDVLELPGFSDGAVSVQD 240
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKR 177
AQLAAPLL+++ G VLDAC+APGGKT H+LE+AD ++L ++D + RL ++ENL+R
Sbjct: 241 GGAQLAAPLLELQPGQRVLDACAAPGGKTGHMLELADDLRLTAIDLDPQRLQRVAENLQR 300
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L+A L D + + + + +DRIL D+PC+ +GV+RR+PD
Sbjct: 301 LGLQAELQAGDAAHPQGR----------------WAERQYDRILLDVPCSATGVMRRHPD 344
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I +LR + DI +L + +IL+ +W +LKPGG LL+ TCSL +E+E+Q F + D+
Sbjct: 345 IKYLRSEADIDRLGRLQGQILDAIWPLLKPGGLLLYATCSLLPQENEQQLEAFLQRCGDA 404
Query: 298 ---------------IRLNSPGQLLPTVNKKQDYDGFFYSLFQK 326
R +PGQ DGF+Y+ Q+
Sbjct: 405 REQPIEAGWGEPRCVGRQIAPGQ--------HGMDGFYYARLQR 440
>gi|254237740|ref|ZP_04931063.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|392981427|ref|YP_006480014.1| 16S rRNA methyltransferase B [Pseudomonas aeruginosa DK2]
gi|419757388|ref|ZP_14283731.1| 16S rRNA methyltransferase B [Pseudomonas aeruginosa PADK2_CF510]
gi|421183713|ref|ZP_15641162.1| hypothetical protein PAE2_5658 [Pseudomonas aeruginosa E2]
gi|126169671|gb|EAZ55182.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|384396187|gb|EIE42607.1| 16S rRNA methyltransferase B [Pseudomonas aeruginosa PADK2_CF510]
gi|392316932|gb|AFM62312.1| 16S rRNA methyltransferase B [Pseudomonas aeruginosa DK2]
gi|404539807|gb|EKA49254.1| hypothetical protein PAE2_5658 [Pseudomonas aeruginosa E2]
Length = 434
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 113/336 (33%), Positives = 173/336 (51%), Gaps = 36/336 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ GE +++ + +P W + +K +P Q + + P
Sbjct: 113 VLNAVLRRAQRE-GETLLAEVDRDPSARLGHPRWLLKALKQAWPE--QLDALCAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTII--GPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+TLR+N+R +Y L ++G++ I+L P + ++P F G S+QD
Sbjct: 170 PMTLRVNRRHGERDAYLAELAEAGIKARACDYSRDGIQLAAPRDVRELPGFAEGRVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQLAA L+ G VLDAC APGGKTCHLLE ++++VD SRL + ENL+
Sbjct: 230 EAAQLAAEQLESAPGQRVLDACCAPGGKTCHLLETQPGLAEVVAVDLEESRLVRVRENLQ 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L+A+L+ +D ++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLQASLVAADARATG----------------EWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ DI L+ ++L+ LW L+ GG LL+ TCS+ E+ + F
Sbjct: 334 DIKLARKPEDIAALAHLQGELLDALWPTLEVGGVLLYATCSVMPAENSDSIAAFLARTPG 393
Query: 297 SIRLNSPG----------QLLPTVNKKQDYDGFFYS 322
+ L+ PG QLLP V + +DGF+Y+
Sbjct: 394 ARELDLPGPWGMKQPHGRQLLPQV---EGHDGFYYA 426
>gi|410620541|ref|ZP_11331409.1| ribosomal RNA small subunit methyltransferase B [Glaciecola polaris
LMG 21857]
gi|410159901|dbj|GAC35547.1| ribosomal RNA small subunit methyltransferase B [Glaciecola polaris
LMG 21857]
Length = 437
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 115/335 (34%), Positives = 181/335 (54%), Gaps = 37/335 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR F+R+ + + + P W ++ YP+ Q+++ILD K
Sbjct: 122 LVNAVLRNFIRQD---MAQNLPDNEQVLSGQPKWLYKKLLNAYPH--QYQDILDAMQNKA 176
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N +++++ Y LL + + I P + L I+ +P + G+ ++QD
Sbjct: 177 PIWLRVNIQRSSVDDYRLLLDQQDIAYEIQQEQPQGVVLSKGCDITTLPGYDEGWFAVQD 236
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEI--ADIKLISVDNNLSRLNMISENLK 176
AAQLAA L+ + +LD C+APGGKTCH+LE+ A I++D SRL I ENL
Sbjct: 237 GAAQLAAHFLNGQPNERILDCCAAPGGKTCHILELEPALTSCIALDIESSRLARIEENLT 296
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL KA LI D S+ + ++ + FDRIL D PC+ +G++RR+P
Sbjct: 297 RLGHKAELICGDASEPS----------------AWWDGQQFDRILLDAPCSATGIIRRHP 340
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR+ +DI L KI++ +W +LKPGG +L+ TCS+ EE++ Q F D
Sbjct: 341 DIKWLRKSSDIDTLVALQAKIIDAMWLLLKPGGTMLYATCSILPEENQLQINAFLSRTAD 400
Query: 297 SIRLNS--------PG-QLLPTVNKKQDYDGFFYS 322
+ +S PG Q+LP ++ DGF+Y+
Sbjct: 401 ASVDSSFANDASDKPGRQVLPG---QKQMDGFYYA 432
>gi|409396478|ref|ZP_11247464.1| 16S rRNA methyltransferase B [Pseudomonas sp. Chol1]
gi|409118959|gb|EKM95349.1| 16S rRNA methyltransferase B [Pseudomonas sp. Chol1]
Length = 449
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 115/338 (34%), Positives = 176/338 (52%), Gaps = 40/338 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ GE ++ + +P W +K +P+ QW+ I + P
Sbjct: 113 LLNAVLRRAQRE-GEALLVELEHDPVIRVAHPRWLQKALKAHWPD--QWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLET--TIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R+ + Y L+ +G+E I+L +P + ++P F +G S+QD
Sbjct: 170 PMMLRVNRRQGSRDQYLAELQAAGVEAFACDFSEDGIRLASPCDVQQLPGFADGRVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE----IADIKLISVDNNLSRLNMISEN 174
AAQLAA LLD+ G VLDAC APGGKTCHLLE +A++ +++D RL + EN
Sbjct: 230 EAAQLAAGLLDLGPGQRVLDACCAPGGKTCHLLEREPQLAEV--VALDLEPKRLARVQEN 287
Query: 175 LKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRR 234
L RL L A L+ +D +++ K F RIL D PC+ +GV+RR
Sbjct: 288 LDRLQLSAHLLAADARATE----------------QWWDGKPFQRILLDAPCSATGVIRR 331
Query: 235 NPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH 294
+PDI R+ +DI L+ ++L+ LW L+ GG LL+ TCS+ E+ E F
Sbjct: 332 HPDIKLTRQADDIPPLAALQGELLDALWPTLEVGGVLLYATCSVLPTENREVIAAFLART 391
Query: 295 KDSIRLNSPG----------QLLPTVNKKQDYDGFFYS 322
+ L+ P QLLP + +DGF+Y+
Sbjct: 392 PGARELDLPAGFGVAQPHGRQLLP---QNDGHDGFYYA 426
>gi|422589567|ref|ZP_16664228.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. morsprunorum
str. M302280]
gi|330876378|gb|EGH10527.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. morsprunorum
str. M302280]
Length = 448
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 116/338 (34%), Positives = 173/338 (51%), Gaps = 35/338 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R GE ++ + +P W +K +P QW+ I + P
Sbjct: 113 LLNAVLRNAQRD-GEALLIELEHDPVVRTAHPRWLQKALKAAWPE--QWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R + Y +LLK +GLE + + I L P + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHHSRDQYLELLKTAGLEASACMFSQDGIVLAEPCDVRSLPGFAEGWISVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQLAA LL++ G VLDAC APGGKTCHLLE+ +++VD RL + ENL+
Sbjct: 230 EAAQLAADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLSGVVAVDLEAKRLVRVRENLE 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L+A LI +D + +++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLEAELIAAD----------------ARDTAQWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ +DI L+ ++L+ LW L+ GG L++ TCS E+ + F
Sbjct: 334 DIKLTRQLDDIAALATLQGELLDALWPTLQVGGMLVYATCSTLPAENTDVIEAFLARTSG 393
Query: 297 SIRLNSPGQL-LPTVNKKQ-----------DYDGFFYS 322
+ L+ GQ P KQ +DGF+Y+
Sbjct: 394 ARELDIAGQAGQPPAGIKQAHGRQLLAQQGGHDGFYYA 431
>gi|419952773|ref|ZP_14468920.1| 16S rRNA methyltransferase B [Pseudomonas stutzeri TS44]
gi|387970818|gb|EIK55096.1| 16S rRNA methyltransferase B [Pseudomonas stutzeri TS44]
Length = 449
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 113/336 (33%), Positives = 174/336 (51%), Gaps = 36/336 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ GE +++ + +P W +K +P+ QW+ I + P
Sbjct: 113 LLNAVLRRAQRE-GEALLAELEHDPVIRVAHPRWLQKALKAHWPD--QWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLET--TIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R+ + Y L+ +G+E I+L +P + ++P F +G S+QD
Sbjct: 170 PMMLRVNRRQGSREQYLAELQAAGVEAFACDFSEDGIRLASPCDVQQLPGFADGRLSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQLAA LLD+ G VLDAC APGGKTCHLLE +++++D RL + ENL
Sbjct: 230 EAAQLAAGLLDLAPGQRVLDACCAPGGKTCHLLEREPQLAEVVALDLEPKRLARVQENLD 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A L+ +D +++ + F RIL D PC+ +GV+RR+P
Sbjct: 290 RLQLSARLVAADARATE----------------QWWDGQPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ +DI L+ ++L+ LW L GG LL+ TCS+ E+ E F
Sbjct: 334 DIKLTRQADDIPPLAALQGELLDALWPTLAVGGVLLYATCSVLPTENREVIGAFLARTPG 393
Query: 297 SIRLNSPG----------QLLPTVNKKQDYDGFFYS 322
+ L+ P QLLP + +DGF+Y+
Sbjct: 394 ARELDLPAGFGVTQPHGRQLLP---QNDGHDGFYYA 426
>gi|326793335|ref|YP_004311155.1| sun protein [Marinomonas mediterranea MMB-1]
gi|326544099|gb|ADZ89319.1| sun protein [Marinomonas mediterranea MMB-1]
Length = 452
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 116/348 (33%), Positives = 191/348 (54%), Gaps = 45/348 (12%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R EI ++ N P W + ++K +P+ F+ +I++ +++P
Sbjct: 123 LINAVLRRYQRDSEEIISEISSQPSVAF-NLPKWLVKRIKKNWPDSFE--SIVEASNERP 179
Query: 61 PLTLRINQRKTTLISYNKLLKKSGL---ETTIIGPLAIKLHTPISISKIPKFFNGFCSIQ 117
P+ +R+N K + +Y L + G+ ET I + + P+ + +PKF +GF SIQ
Sbjct: 180 PMCIRVNLDKVSRETYKSWLDEEGIVSRETLSIDS-GLYIENPVPVFVLPKFESGFVSIQ 238
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLK 176
D AAQL+A +++ + G VLDAC+APGGKT HLLE + + +L +++ RL I +NL
Sbjct: 239 DEAAQLSARIINPQQGERVLDACAAPGGKTGHLLEAMPNQELTAIELEPWRLERIEDNLT 298
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL +A LI+SD +N ++ F+++L D PC+ +GV+RRNP
Sbjct: 299 RLGYQAELIVSDAGDLN----------------NWWDKTAFNKVLLDAPCSATGVIRRNP 342
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ DI +L + +L+N+W++++ GG LL+ TCS+ EE+ EQ F +
Sbjct: 343 DIKINRKPADISELVEIQSTLLDNVWQVVEEGGYLLYATCSIMPEENSEQVDRFLARTSN 402
Query: 297 SIRL------------------NSPGQLLPTVNKKQDYDGFFYSLFQK 326
++ + + QLLP K+ +DGF+Y LFQK
Sbjct: 403 ALEVPLNTINSGFAMNISNAKTDHGIQLLP---KRDGHDGFYYCLFQK 447
>gi|334144602|ref|YP_004537758.1| sun protein [Thioalkalimicrobium cyclicum ALM1]
gi|333965513|gb|AEG32279.1| sun protein [Thioalkalimicrobium cyclicum ALM1]
Length = 433
Score = 190 bits (483), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 116/340 (34%), Positives = 180/340 (52%), Gaps = 32/340 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++N +LR F+R++ E+ +K+ N +P W ++Q+ YP+ ++ +L + P
Sbjct: 113 LLNGLLRRFIREQTEVL-AKLTNTPAIEQAHPQWLVDQLAAAYPD--EYLAVLAANNSNP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTI--IGPLAIKLHTPISISKIPKFFNGFCSIQD 118
+TLR+N + + + L K+ + T P + L P I+ +P + G+ S+QD
Sbjct: 170 LITLRVNPTQCPINDFIDQLGKAEILATTHPASPDGLVLQQPTDITTLPGYGEGWFSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQ AA LL + G +LDAC+APGGKT HLLE A+ + L+++D + RL ++ENL
Sbjct: 230 IAAQQAAALLAPQPGERILDACAAPGGKTTHLLEYANNKLDLLALDKDPDRLRRVAENLA 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL LKA L +D + + ++ K FDRIL D PC+ +G++RR+P
Sbjct: 290 RLQLKANLKAADAANLE----------------TWWDGKLFDRILLDAPCSATGIIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI RR DI L +L+ LW LKPGG LL+ TCS+ +E+ EQ F H D
Sbjct: 334 DIKLHRRPEDIAALQPIQAGLLHQLWSTLKPGGHLLYATCSVLPQENSEQISAFLAAHPD 393
Query: 297 S--IRLNSPGQLLPTVN-------KKQDYDGFFYSLFQKR 327
+ + + P L + DGF+Y+L KR
Sbjct: 394 AQLVPITPPMALTSATQVGWQILPGQAGMDGFYYALLAKR 433
>gi|402701203|ref|ZP_10849182.1| 16S rRNA methyltransferase B [Pseudomonas fragi A22]
Length = 436
Score = 190 bits (483), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 113/333 (33%), Positives = 172/333 (51%), Gaps = 30/333 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ E +++ + +P W +K +P QW+ I + P
Sbjct: 113 LLNAVLRNAQRES-EALLTELEHDPVVRTAHPRWLQKSLKAFWPQ--QWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLET--TIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R T +Y +LL +SG+E + I L P + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHKTRDAYLQLLVESGIEAQPCVFSQDGIVLAEPCDVRNLPGFAEGWISVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQLAA LLD+ G VLDAC APGGKTCH+LE+ +++VD RL + ENL+
Sbjct: 230 EAAQLAADLLDLAPGQRVLDACCAPGGKTCHILEVEPELAGVVAVDLEAKRLVRVRENLE 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A LI +D + ++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLSAELIAAD----------------GRDTATWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ +DI L+ ++L+ +W L+ GG LL+ TCS E+ E F
Sbjct: 334 DIKLTRQPDDIAALATLQGELLDAMWPTLEVGGILLYATCSTLPTENTEVIEAFLARTPG 393
Query: 297 SIRLNSPGQL-------LPTVNKKQDYDGFFYS 322
+ L+ GQ + ++ +DGF+Y+
Sbjct: 394 ARELDIAGQFGIKQPHGRQLLAQEGGHDGFYYA 426
>gi|372272359|ref|ZP_09508407.1| Sun protein [Marinobacterium stanieri S30]
Length = 442
Score = 190 bits (482), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 121/340 (35%), Positives = 190/340 (55%), Gaps = 33/340 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NAILR + R++ + + + WN+P W I++++ +P W++IL ++
Sbjct: 117 LLNAILRRYQREQKQA-EEALAQDPAFQWNHPQWMISKLQHNWPE--HWQSILQANDQQA 173
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+TLR+N+R T + L+++ + T I L +P +S +P F G S+QD
Sbjct: 174 PMTLRVNKRLLTREKALQKLQRADIPATPCQFSDDGIGLDSPCDVSALPGFAEGELSVQD 233
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE----IADIKLISVDNNLSRLNMISEN 174
AAQLAA LL +G VLDAC+APGGK CHLLE + D+ I+V+ R I +N
Sbjct: 234 EAAQLAAGLLAAENGQRVLDACAAPGGKLCHLLEQNTHLQDV--IAVELEPERGQRIHDN 291
Query: 175 LKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRR 234
L RL L+ + + L D + + ++ + FDRIL D PC+G+GV+RR
Sbjct: 292 LHRLGLQ----------LGCEVLTADASSQD-----WWDGQLFDRILIDAPCSGTGVIRR 336
Query: 235 NPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH 294
+PDI LRR DI L+ ILNNLW ML+ GG+L++ TCS++ +E+E F K H
Sbjct: 337 HPDIKLLRRGEDIAALASVQLSILNNLWSMLQSGGRLVYATCSIFGQENERVIERFIKQH 396
Query: 295 KDSIR--LNSP-GQLLP----TVNKKQDYDGFFYSLFQKR 327
D+I +++P G+ P + +DGF+Y++ K+
Sbjct: 397 PDAIHQPIDAPWGEARPFGRQLFPQPDGHDGFYYAVLDKQ 436
>gi|146280416|ref|YP_001170569.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
stutzeri A1501]
gi|339492103|ref|YP_004712396.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
stutzeri ATCC 17588 = LMG 11199]
gi|386018660|ref|YP_005936684.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
stutzeri DSM 4166]
gi|145568621|gb|ABP77727.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
stutzeri A1501]
gi|327478632|gb|AEA81942.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
stutzeri DSM 4166]
gi|338799475|gb|AEJ03307.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
stutzeri ATCC 17588 = LMG 11199]
Length = 440
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 114/336 (33%), Positives = 173/336 (51%), Gaps = 36/336 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ GE +++ + +P W +K +P W+ I + P
Sbjct: 113 LLNAVLRRAQRE-GEALLAELEHDPVIRVAHPRWLQKALKAHWPE--HWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLET--TIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R+T+ Y L+ +G++ I+L +P + ++P F G S+QD
Sbjct: 170 PMMLRVNRRQTSRDVYLTELQTAGIDAFPCEFSEDGIRLASPCDVQQLPGFAEGRVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQLAA LLD+ G VLDAC APGGKTCHLLE L+++D RL + ENL+
Sbjct: 230 EAAQLAAGLLDLAPGQRVLDACCAPGGKTCHLLEREPQLAGLVALDLEPKRLARVRENLE 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A L+ +D +++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLQLDAELLAADARATA----------------QWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ DI L+ ++L+ LW L+ GG LL+ TCS+ E+ E F
Sbjct: 334 DIKLTRQAEDIAPLAALQGEMLDALWPTLEVGGVLLYATCSVLPTENREVIGAFLARTPG 393
Query: 297 SIRLNSPG----------QLLPTVNKKQDYDGFFYS 322
+ L+ P QLLP ++ +DGF+Y+
Sbjct: 394 ARELDLPAGFGLTQPHGRQLLP---QQDGHDGFYYA 426
>gi|410647445|ref|ZP_11357877.1| ribosomal RNA small subunit methyltransferase B [Glaciecola
agarilytica NO2]
gi|410133035|dbj|GAC06276.1| ribosomal RNA small subunit methyltransferase B [Glaciecola
agarilytica NO2]
Length = 437
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 111/335 (33%), Positives = 183/335 (54%), Gaps = 37/335 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR F+R++ +++ + + P W ++ YP + IL+ K
Sbjct: 122 LVNAVLRNFIRQE---MANELPDNEQILSGQPKWLYKKLLTAYPE--KHTPILEAMQVKA 176
Query: 61 PLTLRINQRKTTLISYNKLLKKSGL--ETTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+NQ + + Y +LL ++ + E P + L I+ +P + G+ ++QD
Sbjct: 177 PIWLRVNQNQKSTDEYCRLLDENDIIYERQDEQPQGLILSKGCDITTLPGYDEGWFAVQD 236
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQLAA LL+ + +LD C+APGGKTCH+LE+ +++D +LSRL I ENL
Sbjct: 237 GAAQLAANLLNSQPNERILDCCAAPGGKTCHILELEPKIASCVAMDIDLSRLQRIEENLT 296
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL +A+LI D S+ ++ + FDRIL D PC+ +G++RR+P
Sbjct: 297 RLGHQASLICGDASEPKA----------------WWNGEQFDRILLDAPCSATGIIRRHP 340
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR+ +DI L KI++ +W +LKPGG +L+ TCS+ E++ Q F + D
Sbjct: 341 DIKWLRKSSDIDTLVALQAKIIDAIWPLLKPGGTMLYATCSILPAENQLQISAFLERTTD 400
Query: 297 SI--------RLNSPG-QLLPTVNKKQDYDGFFYS 322
+ ++ PG Q+LP +++ DGF+Y+
Sbjct: 401 AALDPEFNNDAIDKPGRQILPG---EKNMDGFYYA 432
>gi|410629255|ref|ZP_11339959.1| ribosomal RNA small subunit methyltransferase B [Glaciecola
mesophila KMM 241]
gi|410151051|dbj|GAC26728.1| ribosomal RNA small subunit methyltransferase B [Glaciecola
mesophila KMM 241]
Length = 437
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 118/335 (35%), Positives = 177/335 (52%), Gaps = 37/335 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR F+R+ + + + P W+ ++ YP+ +K ILD K
Sbjct: 122 LVNAVLRNFIRQD---TAQNLPDNEQVLSGQPKWFYKKLVDAYPD--NYKTILDAMQVKA 176
Query: 61 PLTLRINQRKTTLISYNKLL--KKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + + Y +LL ++ E I L I+ +P + G+ ++QD
Sbjct: 177 PIWLRVNNKYKSTDEYCRLLDEREVAYERQAAQHQGIILSKGCDITTLPGYDEGWFAVQD 236
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIK-LISVDNNLSRLNMISENLK 176
AAQLAA LL + VLD C+APGGKTCH+LE+ DI +++D SRL I ENL
Sbjct: 237 GAAQLAAGLLGSQPNDRVLDCCAAPGGKTCHILELQPDIATCVAIDIESSRLKRIEENLT 296
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL +ATLI D SK ++ + FDRIL D PC+ +G++RR+P
Sbjct: 297 RLGHQATLICGDASKPT----------------SWWDGQLFDRILLDAPCSATGIIRRHP 340
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR+ +DI L KI++ +W +LKPGG +L+ TCS+ E++ Q F D
Sbjct: 341 DIKWLRKSSDIDVLVALQSKIIDAMWALLKPGGTMLYATCSILPAENQLQISAFLNRTPD 400
Query: 297 SI--------RLNSPG-QLLPTVNKKQDYDGFFYS 322
++ PG Q+LP +KQ DGF+Y+
Sbjct: 401 ALLDDKFENDAAQKPGRQILP--GEKQ-MDGFYYA 432
>gi|152994058|ref|YP_001338893.1| sun protein [Marinomonas sp. MWYL1]
gi|150834982|gb|ABR68958.1| sun protein [Marinomonas sp. MWYL1]
Length = 462
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 117/352 (33%), Positives = 185/352 (52%), Gaps = 49/352 (13%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESY-WNYPIWWINQVKITYPNFFQWKNILDVGHKK 59
++NA+LR + R+ +I + + S +N P W + + +P + I++ +
Sbjct: 133 LMNAVLRRYQREADDIVE--ILEAQPSVEFNMPKWLVKRFNKHWPEHLE--EIIEASNTH 188
Query: 60 PPLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQ 117
PP+ +R+N+ + +Y + L G+ T A+ L + + ++P F +G+ S+Q
Sbjct: 189 PPMCIRVNESLVSRETYKEQLLDLGINTEKGEFSDSALYLKNAVRVGELPGFDDGYVSVQ 248
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE------IADIKLISVDNNLSRLNMI 171
D AAQL+A +L ++G VLDAC+APGGKT HLLE ++ ++L +V+ R+ I
Sbjct: 249 DEAAQLSAHILSPKAGEKVLDACAAPGGKTGHLLEKANSAGLSSMELTAVELESWRMEKI 308
Query: 172 SENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGV 231
NL+RL A LI +D S ++ ++ ++FD+IL D+PCT +GV
Sbjct: 309 ESNLERLGYSAQLICADASDLD----------------AWWDGEHFDKILLDVPCTATGV 352
Query: 232 VRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFS 291
+RRNPDI R+ DI L +ILN +W LK GG +L+ TCSL EE+E+Q F
Sbjct: 353 IRRNPDIKINRKPADIDDLVIIQREILNKVWTTLKSGGFMLYATCSLMPEENEQQIQHFL 412
Query: 292 KNHKDS--IRLNSPG---------------QLLPTVNKKQDYDGFFYSLFQK 326
N +D+ + LNS QL P N +DGF+Y L QK
Sbjct: 413 ANQEDAKEVALNSLAADLAVEWGIPVSHGRQLFPQANG---HDGFYYCLLQK 461
>gi|422652052|ref|ZP_16714841.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. actinidiae
str. M302091]
gi|330965124|gb|EGH65384.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. actinidiae
str. M302091]
Length = 448
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 116/338 (34%), Positives = 171/338 (50%), Gaps = 35/338 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R GE ++ + +P W +K +P QW+ I + P
Sbjct: 113 LLNAVLRNAQRD-GEALLIELEHDPVVRTAHPRWLQKALKAAWPE--QWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R Y +LLK +GLE + I L P + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHHHRDQYLELLKTAGLEASACTFSQDGIVLAEPCDVRSLPGFAEGWISVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQLAA LL++ G VLDAC APGGKTCHLLE+ +++VD RL + ENL+
Sbjct: 230 EAAQLAADLLELSPGQRVLDACCAPGGKTCHLLEVQPQLSGVVAVDLEAKRLVRVRENLE 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L+A LI +D + +++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLEAELIAAD----------------ARDTAQWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ +DI L+ ++L+ LW L+ GG L++ TCS E+ + F
Sbjct: 334 DIKLTRQLDDIAALATLQGELLDALWPTLQVGGMLVYATCSTLPTENTDVIEAFLARTSG 393
Query: 297 SIRLNSPGQL-LPTVNKKQ-----------DYDGFFYS 322
+ L+ GQ P KQ +DGF+Y+
Sbjct: 394 ARELDIAGQAGQPPAGIKQAHGRQLLAQQGGHDGFYYA 431
>gi|114321773|ref|YP_743456.1| sun protein [Alkalilimnicola ehrlichii MLHE-1]
gi|114228167|gb|ABI57966.1| 16S rRNA m(5)C-967 methyltransferase [Alkalilimnicola ehrlichii
MLHE-1]
Length = 437
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 106/337 (31%), Positives = 178/337 (52%), Gaps = 32/337 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR R+ + + + Y P W ++ ++ +P+ +W+ + ++P
Sbjct: 121 LINAVLRRAQREADRLLPALDADPATRY-ALPAWLLDTLRRDWPD--RWQALAAANQQRP 177
Query: 61 PLTLRINQRKTTLISYNKLLKKSGL--ETTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+TLR++ + + + L +G + + P A+ L P ++ ++P F +G S+QD
Sbjct: 178 PMTLRVDLTRWSREEALQALDDAGCPAQPSPWTPTAVTLARPAAVDELPGFADGRLSVQD 237
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAQ AAPLL R G VLDAC+APGGKT HLLE I+L ++D + RL + NL+R
Sbjct: 238 EAAQWAAPLLACRPGERVLDACAAPGGKTGHLLEHCPGIELTALDISEGRLGQVRANLQR 297
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L +A + D ++ ++ + + RIL D PC+G+GV+RR+PD
Sbjct: 298 LRREARCLAGDAARPET----------------WWDGRPYQRILLDAPCSGTGVIRRHPD 341
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I LRR +DI +L+ ++L LW +L PGG+L++ TCS+ E+ F + H ++
Sbjct: 342 IRHLRRPDDIARLADGQGRLLEALWGLLAPGGRLVYATCSVLKAENSRVVAHFLRAHPEA 401
Query: 298 IRLNS---PGQLLPTVNKK-----QDYDGFFYSLFQK 326
L + PG P + + DGF+Y+ +
Sbjct: 402 QWLPAGWPPG--FPADDGQILAGNGGMDGFYYACLHR 436
>gi|407717363|ref|YP_006838643.1| ribosomal RNA small subunit methyltransferase B [Cycloclasticus sp.
P1]
gi|407257699|gb|AFT68140.1| Ribosomal RNA small subunit methyltransferase B [Cycloclasticus sp.
P1]
Length = 438
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 110/340 (32%), Positives = 184/340 (54%), Gaps = 36/340 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++N +LR FLR + + K+ ++ + ++P W + ++ ++ Q K IL ++ P
Sbjct: 120 VLNGVLRNFLRNRESLEKTVDEQPNQRF-SHPDWLVKEISKSWGQ--QTKKILAANNQYP 176
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+++R+NQ+ T Y + L + + T + + L P+++ ++P F+ G S+QD
Sbjct: 177 PMSIRVNQKIVTRDHYLQQLSDNAIHATKNPFNTVGLTLEKPVNVDQLPDFWQGASSVQD 236
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA--DIKLISVDNNLSRLNMISENLK 176
AAQLAA LLDI+ G +LD C+APGGK H+LE A + L+++D + R + ENL+
Sbjct: 237 GAAQLAAELLDIKGGQRILDVCAAPGGKAAHILEQAAGTVSLLALDIDEKRNQRVLENLQ 296
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A ++ D + + ++ K F RIL D PC+ +GV+RR+P
Sbjct: 297 RLKLNAEVMTVDALEAD----------------EWFDEKPFQRILLDAPCSATGVIRRHP 340
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI LR+ +DI L + K+L +W +L G LL+ TCS+ E+ +Q F H D
Sbjct: 341 DIKILRQPSDIPALIELQSKLLKTIWPLLDKKGVLLYATCSILSAENSQQISTFLAEHPD 400
Query: 297 S--IRLNSP--------GQLLPTVNKKQDYDGFFYSLFQK 326
+ I++N+ Q+LP N + DGF+Y+ K
Sbjct: 401 AKEIKINAEWGHTCEHGQQILPGDN---NMDGFYYACLTK 437
>gi|357406751|ref|YP_004918675.1| ribosomal RNA small subunit methyltransferase B [Methylomicrobium
alcaliphilum 20Z]
gi|351719416|emb|CCE25092.1| Ribosomal RNA small subunit methyltransferase B [Methylomicrobium
alcaliphilum 20Z]
Length = 429
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 113/338 (33%), Positives = 183/338 (54%), Gaps = 32/338 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NAI+R + R++ E+ +S N + N+P W I+ + +P Q ++L + +
Sbjct: 111 LLNAIMRNYQRRRDEL-QSLADNDPVAASNHPQWLIDTIGSNWPE--QAGHLLAENNLQA 167
Query: 61 PLTLRINQRKTTLISYNKLLKKS--GLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+TLR+N + Y + L + G T P A+ L P+ + ++P F G S+QD
Sbjct: 168 PMTLRVNSARIGRTEYKEQLAAAQLGAIETSEYPSALILERPVPVEQLPGFSEGLVSVQD 227
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEI-ADIK-LISVDNNLSRLNMISENLK 176
AAQL+A LLD++ VLD C+APGGK+ H+LE+ A++ L ++D + +R+ + + L+
Sbjct: 228 LAAQLSAELLDLKPNQRVLDVCAAPGGKSAHILEMQANLSGLTAIDIDANRMQKVRDTLR 287
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A I++D S+ N ++ +DRIL D PC+ GV+RR+P
Sbjct: 288 RLRLDAECIVADASQPN----------------DWWDGVPYDRILLDAPCSALGVIRRHP 331
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI LR+ DI L + KIL +W +L PGG L++ TCS+ EE+E Q F +H+D
Sbjct: 332 DIKLLRKPGDIAPLQQLQQKILEAVWPLLAPGGLLIYATCSILKEENELQIQRFLNHHQD 391
Query: 297 SIR--------LNSPGQLLPTVNKKQDYDGFFYSLFQK 326
+ + P Q + Q DGF+Y+ +K
Sbjct: 392 ATEWPIDCNWGMARP-QGRQILTGSQAMDGFYYARIRK 428
>gi|109896353|ref|YP_659608.1| sun protein [Pseudoalteromonas atlantica T6c]
gi|109698634|gb|ABG38554.1| 16S rRNA m(5)C-967 methyltransferase [Pseudoalteromonas atlantica
T6c]
Length = 437
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 115/335 (34%), Positives = 175/335 (52%), Gaps = 37/335 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR F+R+ + + + P W+ ++ YP+ +K ILD K
Sbjct: 122 LVNAVLRNFIRQD---TAHNLPDNEQVLSGQPKWFYKKLVDAYPD--NYKTILDAMQVKA 176
Query: 61 PLTLRINQRKTTLISYNKLL--KKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + + Y +LL + E P I L I+ +P + G+ ++QD
Sbjct: 177 PIWLRVNNKHKSTDEYCRLLDDRDVAYERQATQPQGIILSKGCDITTLPGYDEGWFAVQD 236
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQLAA LL + VLD C+APGGKTCH++E+ +++D SRL I ENL
Sbjct: 237 GAAQLAAGLLGSQPNDRVLDCCAAPGGKTCHIIELQPDLATCVAIDIESSRLKRIEENLT 296
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL +ATLI D S+ ++ + FDRIL D PC+ +G++RR+P
Sbjct: 297 RLGHQATLICGDASE----------------PASWWDGQLFDRILLDAPCSATGIIRRHP 340
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR+ +DI L KI++ +W +LKPGG +L+ TCS+ E++ Q F D
Sbjct: 341 DIKWLRKSSDIDVLVALQSKIIDAMWALLKPGGTMLYATCSILPAENQLQINAFLNRTPD 400
Query: 297 SI--------RLNSPG-QLLPTVNKKQDYDGFFYS 322
++ PG Q+LP +KQ DGF+Y+
Sbjct: 401 ALLDDKFDNDAAQKPGRQILP--GEKQ-MDGFYYA 432
>gi|330831512|ref|YP_004394464.1| ribosomal RNA small subunit methyltransferase B [Aeromonas veronii
B565]
gi|406675258|ref|ZP_11082447.1| ribosomal RNA small subunit methyltransferase B [Aeromonas veronii
AMC35]
gi|423211837|ref|ZP_17198370.1| ribosomal RNA small subunit methyltransferase B [Aeromonas veronii
AER397]
gi|328806648|gb|AEB51847.1| Ribosomal RNA small subunit methyltransferase B [Aeromonas veronii
B565]
gi|404612638|gb|EKB09696.1| ribosomal RNA small subunit methyltransferase B [Aeromonas veronii
AER397]
gi|404627590|gb|EKB24390.1| ribosomal RNA small subunit methyltransferase B [Aeromonas veronii
AMC35]
Length = 430
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 117/335 (34%), Positives = 183/335 (54%), Gaps = 35/335 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR F R E+ ++ + +P W +++ Y + +W+ I++ +++P
Sbjct: 113 LINGVLRNFQRS-AEVILLRIDRVPSIRLGHPEWLTKRLRQAYHD--EWEFIMEANNQRP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTI--IGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ +R N ++ + + + ++G+ G I L P ++K+P F G CS+QD
Sbjct: 170 PMWIRNNSQRQSRDAMLARMAEAGINAVAGEEGEDCILLERPCDVTKLPGFEVGDCSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQ AA LLD + G +VLDAC+APGGKT HLLE +++VD + +RL + ENL
Sbjct: 230 GAAQQAAALLDPQPGEWVLDACAAPGGKTAHLLERQPKLAGVVAVDADENRLKRVQENLD 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
R+ L A +I D + +++ FDRIL D PC+ +GV+RR+P
Sbjct: 290 RIGLTAKVIHGDAAAPE----------------QWWPEGQFDRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLRR DI++L++ +ILN LW LK GG LL+ TCS+ EE+ EQ F KD
Sbjct: 334 DIKWLRRDQDIRELAELQRRILNALWGKLKSGGTLLYATCSVLPEENREQIRAFLAATKD 393
Query: 297 SIRL--------NSPG-QLLPTVNKKQDYDGFFYS 322
+ + + PG Q LP + + DGF+Y+
Sbjct: 394 AKLVPLHEQDTPDCPGRQFLPG---EAEMDGFYYA 425
>gi|90415406|ref|ZP_01223340.1| hypothetical protein GB2207_08821 [gamma proteobacterium HTCC2207]
gi|90332729|gb|EAS47899.1| hypothetical protein GB2207_08821 [marine gamma proteobacterium
HTCC2207]
Length = 439
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 113/348 (32%), Positives = 189/348 (54%), Gaps = 40/348 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR FLR++ E+ ++K+ +P W +N + ++ + ++L +++
Sbjct: 112 LVNAVLRNFLRQRTEL-ETKLAKNPVFVRAHPQWLLNDLFTSWGSAVA-IDVLAANNEQA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGL--ETTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+TLR+NQ + + Y + L + + +TT I+L + I ++ +P + +G S+QD
Sbjct: 170 PMTLRVNQLQGSRDEYLQQLSAADIRAQTTQFSEQGIQLQSAIDVATLPGWDSGAVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQL A LL++ VLDAC APGGKTCH+LE KL++V+ R+ + ENL+
Sbjct: 230 EAAQLTAALLELEPDQQVLDACCAPGGKTCHILETQPQLSKLVAVELESRRMPRVEENLR 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL LKA L+++D S ++ K F RIL D PC+ SGV+RR+P
Sbjct: 290 RLGLKADLVVNDASATA----------------DWWDGKPFQRILLDAPCSASGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEE----------- 285
DI LR+ DI KL++ ++L++LW+ L GG LL+ TCS+ +E+++
Sbjct: 334 DIKLLRKTTDIVKLAELQLQLLHSLWQTLDEGGILLYATCSVLPQENDQVIETFLAETSL 393
Query: 286 ----QAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKRKE 329
A ++S + + QL P ++ DGF+YS +K +
Sbjct: 394 ATTSAAELYSIEAEWGTKTAFGRQLFPKIDGN---DGFYYSRLRKTSQ 438
>gi|329894840|ref|ZP_08270640.1| Ribosomal RNA small subunit methyltransferase B [gamma
proteobacterium IMCC3088]
gi|328922734|gb|EGG30068.1| Ribosomal RNA small subunit methyltransferase B [gamma
proteobacterium IMCC3088]
Length = 425
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 121/339 (35%), Positives = 176/339 (51%), Gaps = 40/339 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN LR FLR++ + ++ + E+ + W V +P + I+D +
Sbjct: 113 LINGCLRRFLREQ-DTLRANLTTAAEAA--HSEWMYQMVVAQWPE--RAAEIIDANNHAG 167
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTI--IGPLAIKLHTPISISKIPKFFNGFCSIQD 118
PL LR+N R + Y + L+ ++ T+ + P I+LH S+ K+P F G+ SIQD
Sbjct: 168 PLCLRVNPRHHSAGDYLQTLRSMDIDGTLSELAPECIRLHQACSVEKLPGFEKGWVSIQD 227
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEI-ADIKLISVDNNLSRLNMISENLKR 177
AAQ+AA L I VLDACSAPGGKTCHL E+ D ++ D N RL + E+ +R
Sbjct: 228 EAAQVAAQLFAIEPKQKVLDACSAPGGKTCHLAELYPDAYFVARDINSERLLKVRESAER 287
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L I++++L + N R + FD ILAD+PC+GSGVVRR+PD
Sbjct: 288 LGLN----------IDIQELS---QAQDNER------ECFDHILADVPCSGSGVVRRHPD 328
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLW----------FEESEEQA 287
I LR +D+ + +IL NLW LKPGG LL+VTCS++ F + E QA
Sbjct: 329 IKTLRLASDLAQFHAQQLQILQNLWPKLKPGGTLLYVTCSIFEQENDQTIRLFLQQETQA 388
Query: 288 IIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 326
I + N QL+P ++ DG ++ QK
Sbjct: 389 SIQAINKSWGYATEFGRQLIP---QRDGSDGLYFCRVQK 424
>gi|428941576|ref|ZP_19014617.1| 16S rRNA methyltransferase B, partial [Klebsiella pneumoniae VA360]
gi|426300285|gb|EKV62578.1| 16S rRNA methyltransferase B, partial [Klebsiella pneumoniae VA360]
Length = 262
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 108/282 (38%), Positives = 164/282 (58%), Gaps = 32/282 (11%)
Query: 58 KKPPLTLRINQRKTTLISYNKLLKKSGLE--TTIIGPLAIKLHTPISISKIPKFFNGFCS 115
++PP+ LR+N+ + + LL ++GLE T P A++L TP + +P F G+ +
Sbjct: 1 QRPPMWLRVNRNHHSRDEWLALLNEAGLEGFTHPDYPDAVRLATPAPVHALPGFDEGWVT 60
Query: 116 IQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISEN 174
+QDA+AQ L ++G +LD C+APGGKT H+LE+A ++++VD + RL+ + +N
Sbjct: 61 VQDASAQGCMRYLQPKNGERILDLCAAPGGKTTHILEVAPQSQVMAVDIDEQRLSRVYDN 120
Query: 175 LKRLNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVV 232
LKRL +KA + K+ + RF ++ N+ FDRIL D PC+ +GV+
Sbjct: 121 LKRLGMKAEV------------------KQGDGRFPEQWCGNEQFDRILLDAPCSATGVI 162
Query: 233 RRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSK 292
RR+PDI WLRR DI +L++ +ILN W LKPGG L++ TCS+ EE+ +Q F
Sbjct: 163 RRHPDIKWLRRDRDIAELAQLQAEILNATWAHLKPGGTLVYATCSILPEENGQQIAAFLA 222
Query: 293 NHKDS-----IRLNSPGQL-LPTVNKKQDYDGFFYSLFQKRK 328
D+ SPGQ LP V ++ DGFFY+ KR+
Sbjct: 223 RTPDAELHATGTPASPGQQNLPGV---EEGDGFFYAKLIKRR 261
>gi|254483320|ref|ZP_05096551.1| ribosomal RNA small subunit methyltransferase B [marine gamma
proteobacterium HTCC2148]
gi|214036415|gb|EEB77091.1| ribosomal RNA small subunit methyltransferase B [marine gamma
proteobacterium HTCC2148]
Length = 433
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 124/343 (36%), Positives = 185/343 (53%), Gaps = 40/343 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN-YPIWWINQVKITYPNFFQWKNILDVGHKK 59
+ NA+LR FLR++ S + + E + +P W + + +P Q I+D + +
Sbjct: 114 LSNAVLRRFLRER----DSLLTKLPEGAGHAHPQWLFDIINEQWPE--QANAIIDANNAQ 167
Query: 60 PPLTLRINQRKTTLISYNKLLKKSGLET--TIIGPLAIKLHTPISISKIPKFFNGFCSIQ 117
PP+TLRIN R+ Y L +G+ + P AI L + + ++P F G S+Q
Sbjct: 168 PPMTLRINARRGNRADYLLRLNAAGIAAKEGDLSPQAIYLESARDVLELPGFETGDASVQ 227
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEI--ADIKLISVDNNLSRLNMISENL 175
D AAQ+AA LL + G VLDAC+APGGK+CH+LE+ A +L ++D + RL + +NL
Sbjct: 228 DEAAQMAALLLAAQPGERVLDACAAPGGKSCHILELQPALGELTAMDLDPQRLERVQQNL 287
Query: 176 KRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRN 235
+RL L+A+LI D + N + FD++L D PC+ SGV+RR+
Sbjct: 288 ERLGLQASLIAGDGA----------------NPPPVLAAQSFDKVLVDAPCSASGVIRRH 331
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PD+ LRR+NDI L IL LW +LKPGG+LL+ TCS+ E+ F K
Sbjct: 332 PDVKSLRRQNDIASLGAQQTAILQGLWPLLKPGGRLLYATCSILDGENNSVVNSFLKATD 391
Query: 296 DSIRLN-------SPG---QLLPTVNKKQDYDGFFYSLFQKRK 328
D+I + + G QLLP ++ DG FY+L +KR+
Sbjct: 392 DAILVQPELTWGVTAGVGRQLLPNISGP---DGLFYALIEKRQ 431
>gi|28867419|ref|NP_790038.1| sun protein [Pseudomonas syringae pv. tomato str. DC3000]
gi|46396868|sp|Q88B41.1|RSMB_PSESM RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|28850653|gb|AAO53733.1| sun protein [Pseudomonas syringae pv. tomato str. DC3000]
Length = 448
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 116/338 (34%), Positives = 170/338 (50%), Gaps = 35/338 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R GE ++ + +P W +K +P QW+ I + P
Sbjct: 113 LLNAVLRNAQRD-GEALLIELEHDPVVRTAHPRWLQKALKAAWPE--QWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R Y +LLK +GLE + I L P + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHQRRDQYLELLKTAGLEASACTFSQDGIVLAEPCDVRSLPGFAEGWISVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQLAA LL++ G VLDAC APGGKTCHLLE+ +++VD RL + ENL+
Sbjct: 230 EAAQLAADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLSGVVAVDLEAKRLVRVRENLE 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A LI +D + +++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLDAELIAADARETA----------------QWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ +DI L+ ++L+ LW L+ GG L++ TCS E+ + F
Sbjct: 334 DIKLTRQLDDIAALATLQGELLDALWPTLQVGGMLVYATCSTLPTENTDVIEAFLARTSG 393
Query: 297 SIRLNSPGQL-LPTVNKKQ-----------DYDGFFYS 322
+ L+ GQ P KQ +DGF+Y+
Sbjct: 394 ARELDIAGQAGQPPAGIKQPHGRQLLAQQGGHDGFYYA 431
>gi|302130426|ref|ZP_07256416.1| sun protein [Pseudomonas syringae pv. tomato NCPPB 1108]
Length = 448
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 116/338 (34%), Positives = 170/338 (50%), Gaps = 35/338 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R GE ++ + +P W +K +P QW+ I + P
Sbjct: 113 LLNAVLRNAQRD-GEALLIELEHDPVVRTAHPRWLQKALKAAWPE--QWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R Y +LLK +GLE + I L P + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHQRRDQYLELLKTAGLEASACTFSQDGIVLAEPCDVRSLPGFAEGWISVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQLAA LL++ G VLDAC APGGKTCHLLE+ +++VD RL + ENL
Sbjct: 230 EAAQLAADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLSGVVAVDLEAKRLVRVRENLD 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A LI +D + ++++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLDAELIAADARETA----------------QWWEGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ +DI L+ ++L+ LW L+ GG L++ TCS E+ + F
Sbjct: 334 DIKLTRQLDDIAALATLQGELLDALWPTLQVGGMLVYATCSTLPTENTDVIEAFLARTSG 393
Query: 297 SIRLNSPGQL-LPTVNKKQ-----------DYDGFFYS 322
+ L+ GQ P KQ +DGF+Y+
Sbjct: 394 ARELDIAGQAGQPPAGIKQPHGRQLLAQQGGHDGFYYA 431
>gi|226942185|ref|YP_002797258.1| rRNA SAM-dependent methyltransferase [Azotobacter vinelandii DJ]
gi|226717112|gb|ACO76283.1| Fmu, rRNA SAM-dependent methyltransferase [Azotobacter vinelandii
DJ]
Length = 443
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 114/341 (33%), Positives = 172/341 (50%), Gaps = 41/341 (12%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR ++++GE +++ N + +P W + +P W+ I ++ P
Sbjct: 114 LLNAVLRR-VQREGEALLAELANDPVARTAHPRWLQQALAQHWPE--HWEAICAADNEHP 170
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTII--GPLAIKLHTPISISKIPKFFNGFCSIQD 118
PLTLR+N+R T +Y LK +G+ + I L P + +P F G S+QD
Sbjct: 171 PLTLRVNRRLTARDTYLATLKAAGIAASACRFSRDGILLDEPCDVRSLPGFAEGLVSVQD 230
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQLAA LL+ G VLDAC APGGKTCHLLE +L+++D RL + ENL
Sbjct: 231 EAAQLAAYLLEPMPGQRVLDACCAPGGKTCHLLESEPRLAELVAIDLEEKRLARVRENLD 290
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A L+ +D ++ + F RIL D PC+ +GV+RR+P
Sbjct: 291 RLGLAARLVAADARATEA----------------WWDGRRFQRILLDAPCSATGVIRRHP 334
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ +DI L+ ++L+ LW L+ GG LL+ TCS+ E+ + F
Sbjct: 335 DIKLTRQASDIPALASLQGELLDALWPTLEVGGILLYATCSILPAENSDTIAAFLARTPG 394
Query: 297 SIRLN--------SPG-------QLLPTVNKKQDYDGFFYS 322
+ L+ PG QLLP + +DGF+Y+
Sbjct: 395 ARELDIASGFVGAKPGLAQRHGRQLLP---QPHGHDGFYYA 432
>gi|70733533|ref|YP_257172.1| 16S rRNA methyltransferase GidB [Pseudomonas protegens Pf-5]
gi|68347832|gb|AAY95438.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
protegens Pf-5]
Length = 441
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 115/338 (34%), Positives = 175/338 (51%), Gaps = 35/338 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ E +++ + +P W +K +P QW+ I + P
Sbjct: 113 LLNAVLRRAQRES-ETLLAELEHDPVVRTAHPRWLQKSLKAFWPE--QWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGL--ETTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R + +Y KLL ++G+ + + I L + + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHHSRDAYLKLLSEAGVAAKACVYSQDGIVLDEALDVRSLPGFAEGWISVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEI--ADIKLISVDNNLSRLNMISENLK 176
AAQLAA LL++ G VLDAC APGGKTCH+LE+ A +++VD RL + ENL
Sbjct: 230 EAAQLAAELLELAPGQRVLDACCAPGGKTCHILEVQPALAGVVAVDLEAKRLVRVRENLD 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A LI +D + T ++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLDAQLIAAD-------------GRDTQA---WWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ DI L++ ++L+ +W+ L+ GG LL+ TCS E+ E F
Sbjct: 334 DIKLTRQPEDIAALAQLQGELLDAMWQALEVGGILLYATCSTLPTENTEVIEAFLARTPG 393
Query: 297 SIRLNSPGQL-LPTVNKKQ-----------DYDGFFYS 322
+ L+ GQL P KQ +DGF+Y+
Sbjct: 394 ARELDIGGQLGQPAAGLKQPHGRQLLAQEGGHDGFYYA 431
>gi|398853373|ref|ZP_10609976.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM80]
gi|398239904|gb|EJN25602.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM80]
Length = 436
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 115/337 (34%), Positives = 174/337 (51%), Gaps = 38/337 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ IF +++ +P W +K +P QW+ I + + P
Sbjct: 113 LLNAVLRNAQRESETIF-AELERDPVVRTAHPRWLQKSLKAFWPE--QWEAICEANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R + +Y LL ++G+ T + I L + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHHSRDAYLGLLTEAGIAATPCVYSRDGIILEVAADVRSLPGFAEGWISVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEI--ADIKLISVDNNLSRLNMISENLK 176
AAQLAA LLD+ G VLDAC APGGKTCH+LE A +++VD RL + ENL+
Sbjct: 230 EAAQLAADLLDLAPGQRVLDACCAPGGKTCHILEAEQALAGVVAVDLEAKRLVRVKENLE 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A LI +D + +++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLNAELIAAD----------------GRDTEKWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ +DI L++ ++L+ +WK L+ GG LL+ TCS E+ E F +
Sbjct: 334 DIKLTRQPDDIAALAQLQGELLDAMWKTLEVGGILLYATCSTLPTENTEVIAAFLERTPG 393
Query: 297 SIRLNSPGQLLPTVNKKQ-----------DYDGFFYS 322
+ L+ L T KQ +DGF+Y+
Sbjct: 394 ARELD----LATTAGIKQPHGRQLLAQQGGHDGFYYA 426
>gi|422224063|ref|ZP_16383871.1| sun protein [Pseudomonas avellanae BPIC 631]
gi|407992706|gb|EKG34277.1| sun protein [Pseudomonas avellanae BPIC 631]
Length = 448
Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 116/338 (34%), Positives = 172/338 (50%), Gaps = 35/338 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R GE ++ + +P W +K +P QW+ I + P
Sbjct: 113 LLNAVLRNAQRD-GEALLIELEHDPVVRTAHPRWLQKALKAAWPE--QWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R + Y +LLK +GLE + I L P + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHHSRDQYLELLKIAGLEASACTFSQDGIVLAEPCDVRSLPGFAEGWISVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQLAA LL++ G VLDAC APGGKTCHLLE+ +++VD RL + ENL+
Sbjct: 230 EAAQLAADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLSGVVAVDLEAKRLVRVRENLE 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L+A LI +D + +++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLEAELIAAD----------------ARDTAQWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ +DI L+ ++L+ LW L+ GG L++ TCS E+ + F
Sbjct: 334 DIKLTRQLDDIAALATLQGELLDALWPTLQVGGMLVYATCSTLPTENTDVIEAFLARTSG 393
Query: 297 SIRLNSPGQL-LPTVNKKQ-----------DYDGFFYS 322
+ L+ GQ P KQ +DGF+Y+
Sbjct: 394 ARELDIAGQAGQPPPGIKQTHGRQLLAQQGGHDGFYYA 431
>gi|389680644|ref|ZP_10171994.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
chlororaphis O6]
gi|388555749|gb|EIM18992.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
chlororaphis O6]
Length = 441
Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 114/338 (33%), Positives = 171/338 (50%), Gaps = 35/338 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR R+ +F +++ +P W +K +P QW+ I + P
Sbjct: 113 LINAVLRRAQRESEALF-AELERDPVVRTAHPRWLQKSLKAFWPE--QWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLET--TIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R + +Y +LL ++G+ + I L + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHHSRAAYLQLLSEAGVAAKPCVYSQDGIVLDEAADVRSLPGFAEGWISVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEI--ADIKLISVDNNLSRLNMISENLK 176
AAQLAA LL++ G VLDAC APGGKTCH+LE+ A +++VD RL + ENL
Sbjct: 230 EAAQLAAELLELAPGQRVLDACCAPGGKTCHILEVEPALAGVVAVDLEAKRLVRVQENLD 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A LI +D + ++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLHAELIAAD----------------GRDTAAWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ +DI L+ ++L+ +W L+ GG LL+ TCS E+ E F
Sbjct: 334 DIKLTRQADDIAALATLQGELLDTMWSTLEVGGILLYATCSTLPTENTEVIEAFLARTPG 393
Query: 297 SIRLNSPGQL-LPTVNKKQ-----------DYDGFFYS 322
+ L+ GQL P KQ +DGF+Y+
Sbjct: 394 ARELDIGGQLGQPPAGLKQPHGRQLLAQEGGHDGFYYA 431
>gi|425896690|ref|ZP_18873281.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
chlororaphis subsp. aureofaciens 30-84]
gi|397881818|gb|EJK98306.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
chlororaphis subsp. aureofaciens 30-84]
Length = 441
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 114/338 (33%), Positives = 171/338 (50%), Gaps = 35/338 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR R+ +F +++ +P W +K +P QW+ I + P
Sbjct: 113 LINAVLRRAQRESEALF-AELERDPVVRTAHPRWLQKSLKAFWPE--QWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLET--TIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R + +Y +LL ++G+ + I L + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHHSRAAYLQLLSEAGVAAKPCVYSQDGIVLDEAADVRALPGFAEGWISVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEI--ADIKLISVDNNLSRLNMISENLK 176
AAQLAA LL++ G VLDAC APGGKTCH+LE+ A +++VD RL + ENL
Sbjct: 230 EAAQLAAELLELAPGQRVLDACCAPGGKTCHILEVEPALAGVVAVDLEAKRLVRVQENLD 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A LI +D + ++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLNAELIAAD----------------GRDTAAWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ +DI L+ ++L+ +W L+ GG LL+ TCS E+ E F
Sbjct: 334 DIKLTRQADDIAALASLQGELLDAMWSTLEVGGILLYATCSTLPTENTEVIEAFLARTPG 393
Query: 297 SIRLNSPGQL-LPTVNKKQ-----------DYDGFFYS 322
+ L+ GQL P KQ +DGF+Y+
Sbjct: 394 ARELDIAGQLGQPPAGLKQPHGRQLLAQEGGHDGFYYA 431
>gi|78484536|ref|YP_390461.1| sun protein [Thiomicrospira crunogena XCL-2]
gi|78362822|gb|ABB40787.1| Ribosomal RNA small subunit methyltransferase B [Thiomicrospira
crunogena XCL-2]
Length = 436
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 121/345 (35%), Positives = 186/345 (53%), Gaps = 45/345 (13%)
Query: 1 MINAILREFLRKKG----EIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVG 56
+IN +LR FLR K E+ K Y +++P W+ ++ YP+ W+ IL
Sbjct: 116 LINGVLRTFLRDKDSICEEVDKKPAYR-----YSHPQWFTKTIRNAYPD--HWEQILSAN 168
Query: 57 HKKPPLTLRINQRKTTLISYNKLLKKSGLETTII--GPLAIKLHTPISISKIPKFFNGFC 114
++ PLTLR+N T ++ LL +E I P I L + I+++P + G
Sbjct: 169 NEPAPLTLRVNPLYQTREAFLALLSDQAVEADIHPKAPQGIVLKNSLDITQLPTYDEGGF 228
Query: 115 SIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMIS 172
S+QDAAAQ AA LL + ++LDAC+APGGKT HLLE++D K+ +++ R+ +S
Sbjct: 229 SVQDAAAQQAAYLLAPQPNEFILDACAAPGGKTTHLLELSDNQAKVFALEKEPERIERLS 288
Query: 173 ENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVV 232
ENL RL L A + + D S+ + +++ FD+IL D PC+ +G++
Sbjct: 289 ENLYRLALTAEIEVGDASQPD----------------QWWPEIQFDKILLDAPCSATGII 332
Query: 233 RRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSK 292
RR+PDI W R DI L++ IL +W LKPGGKLL+ TCS+ +E+ +Q F +
Sbjct: 333 RRHPDIKWHRTPEDITVLTQLQAAILQAIWPRLKPGGKLLYATCSVLPQENRDQISQFLQ 392
Query: 293 NHKDS----------IRLNSPG-QLLPTVNKKQDYDGFFYSLFQK 326
D+ I +++PG Q+LP + DGF+Y L +K
Sbjct: 393 QTPDAKEIPIGADWGITIDAPGRQILP---GQDGMDGFYYCLIEK 434
>gi|145633872|ref|ZP_01789593.1| methionyl-tRNA formyltransferase [Haemophilus influenzae 3655]
gi|144985244|gb|EDJ92087.1| methionyl-tRNA formyltransferase [Haemophilus influenzae 3655]
Length = 265
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 109/275 (39%), Positives = 160/275 (58%), Gaps = 25/275 (9%)
Query: 64 LRINQRKTTLISYNKLLKKSGLET-TIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAAQ 122
LR+N +K L +Y LL++ G+ T P A+ L PI++ K+P F G ++QD +AQ
Sbjct: 3 LRVNSQKNALETYRTLLEEQGISAKTSHHPNALCLDIPIAVQKLPHFEEGAVTVQDLSAQ 62
Query: 123 LAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKRLNLK 181
AA LL+ ++ ++LDAC+APGGKT H+LE+A +I++D RL + ENL+RLN +
Sbjct: 63 WAATLLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLERLNQQ 122
Query: 182 ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWL 241
A ++ D S+ + + +I K FDRIL D PC+ +GV+RR+PDI WL
Sbjct: 123 AIVVCGDASQPD--EWLAEIGKSAVK---------FDRILLDAPCSATGVIRRHPDIKWL 171
Query: 242 RRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLN 301
R++ DI +L + KIL+ LW+ LKP G LL+ TCS+ EE+ EQ F H D+ L+
Sbjct: 172 RKETDIAQLVELQKKILSALWEKLKPNGVLLYATCSVLPEENCEQIQAFLNAHADAELLS 231
Query: 302 SP---------GQLLPTVNKKQDYDGFFYSLFQKR 327
P Q +P N DGF+Y+ KR
Sbjct: 232 LPFSDDKSAVGFQFIPQPNSG---DGFYYAKLLKR 263
>gi|410091107|ref|ZP_11287684.1| 16S rRNA methyltransferase B [Pseudomonas viridiflava UASWS0038]
gi|409761675|gb|EKN46734.1| 16S rRNA methyltransferase B [Pseudomonas viridiflava UASWS0038]
Length = 436
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 115/336 (34%), Positives = 173/336 (51%), Gaps = 36/336 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ GE ++ + +P W +K +P QW+ I + P
Sbjct: 113 LLNAVLRNAQRE-GEALLIELEHDPVVRTAHPRWLQKALKAAWPE--QWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R + Y +LLK +GLE + I L P + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHHSRDQYLELLKAAGLEASACTFSQDGIVLAEPCDVRSLPGFAEGWISVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQLAA LL++ G VLDAC APGGKTCHLLE+ +++VD RL + ENL
Sbjct: 230 EAAQLAADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLSGVVAVDLEAKRLVRVRENLD 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A LI +D +++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLDAELIAAD----------------ARETAQWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEE--QAIIFSKNH 294
DI R+ +DI L+ ++L+ LW L+ GG L++ TCS E+ E +A + +
Sbjct: 334 DIKLTRQPDDIVALATLQGELLDALWPTLEVGGMLIYATCSTLPTENTEVVEAFLARTSG 393
Query: 295 KDSIRLNSPG--------QLLPTVNKKQDYDGFFYS 322
+ + S QLL ++ +DGF+Y+
Sbjct: 394 ARELDIASEAGIKQPHGRQLL---AQQGGHDGFYYA 426
>gi|213968427|ref|ZP_03396570.1| sun protein [Pseudomonas syringae pv. tomato T1]
gi|301384285|ref|ZP_07232703.1| sun protein [Pseudomonas syringae pv. tomato Max13]
gi|302060153|ref|ZP_07251694.1| sun protein [Pseudomonas syringae pv. tomato K40]
gi|213926715|gb|EEB60267.1| sun protein [Pseudomonas syringae pv. tomato T1]
Length = 448
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 116/338 (34%), Positives = 169/338 (50%), Gaps = 35/338 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R GE ++ + +P W +K +P QW+ I + P
Sbjct: 113 LLNAVLRNAQRD-GEALLIELEHDPVVRTAHPRWLQKALKAAWPE--QWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R Y +LLK +GLE + I L P + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHQRRDQYLELLKTAGLEASACTFSQDGIVLAEPCDVRSLPGFAEGWISVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQLAA LL++ G VLDAC APGGKTCHLLE+ +++VD RL + ENL
Sbjct: 230 EAAQLAADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLSGVVAVDLEAKRLVRVRENLD 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A LI +D + +++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLDAELIAADARETA----------------QWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ +DI L+ ++L+ LW L+ GG L++ TCS E+ + F
Sbjct: 334 DIKLTRQLDDIAALATLQGELLDALWPTLQVGGMLVYATCSTLPTENTDVIEAFLARTSG 393
Query: 297 SIRLNSPGQL-LPTVNKKQ-----------DYDGFFYS 322
+ L+ GQ P KQ +DGF+Y+
Sbjct: 394 ARELDIAGQAGQPPAGIKQPHGRQLLAQQGGHDGFYYA 431
>gi|428934983|ref|ZP_19008481.1| 16S rRNA methyltransferase B, partial [Klebsiella pneumoniae JHCK1]
gi|426301668|gb|EKV63900.1| 16S rRNA methyltransferase B, partial [Klebsiella pneumoniae JHCK1]
Length = 262
Score = 187 bits (476), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 108/282 (38%), Positives = 163/282 (57%), Gaps = 32/282 (11%)
Query: 58 KKPPLTLRINQRKTTLISYNKLLKKSGLE--TTIIGPLAIKLHTPISISKIPKFFNGFCS 115
+ PP+ LR+N+ + + LL ++GLE T P A++L TP + +P F G+ +
Sbjct: 1 QPPPMWLRVNRNHHSRDEWLALLNETGLEGFTHPDYPDAVRLATPAPVHALPGFDEGWVT 60
Query: 116 IQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISEN 174
+QDA+AQ L +G +LD C+APGGKT H+LE+A ++++VD + RL+ + +N
Sbjct: 61 VQDASAQGCMRYLQPENGERILDLCAAPGGKTTHILEVAPQSQVMAVDIDEQRLSRVYDN 120
Query: 175 LKRLNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVV 232
LKRL +KA + K+ + RF ++ N+ FDRIL D PC+ +GV+
Sbjct: 121 LKRLGVKAEV------------------KQGDGRFPEQWCGNEQFDRILLDAPCSATGVI 162
Query: 233 RRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSK 292
RR+PDI WLRR DI +L++ +ILN +W LKPGG L++ TCS+ EE+ +Q F
Sbjct: 163 RRHPDIKWLRRDRDIAELAQLQAEILNAIWGHLKPGGTLVYATCSILPEENSQQIAAFLA 222
Query: 293 NHKDS-----IRLNSPGQL-LPTVNKKQDYDGFFYSLFQKRK 328
D+ SPGQ LP V ++ DGFFY+ KR+
Sbjct: 223 RTPDAELHATGTPASPGQQNLPGV---EEGDGFFYAKLIKRR 261
>gi|300115538|ref|YP_003762113.1| sun protein [Nitrosococcus watsonii C-113]
gi|299541475|gb|ADJ29792.1| sun protein [Nitrosococcus watsonii C-113]
Length = 435
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 114/338 (33%), Positives = 186/338 (55%), Gaps = 30/338 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
M+N LR +LR + ++++ ++ +P W ++ ++ ++P+ W I+ + P
Sbjct: 117 MLNGTLRAYLRNE-TALQAQVATHEAAHTAHPQWLLDTIRHSWPD--HWPQIITANNNHP 173
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
PL+LRIN+ + +Y + L+++ ++ I + L P ++ +P F G S+QD
Sbjct: 174 PLSLRINRLQNNRENYLRELRRNDIKAWPIPHTESGVILEQPRQVTTLPGFLKGQISVQD 233
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
A Q A PLL + G VLDAC+APGGKT H+LE+ L+++D + +RL + NLK
Sbjct: 234 GAGQRAVPLLALAPGQRVLDACAAPGGKTSHILELEPQLATLLALDLDATRLGRLENNLK 293
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL LKA +I + + + ++ FDRIL D PC+GSGV+RR+P
Sbjct: 294 RLQLKAEVIQGNALQPDA----------------WWDGIPFDRILLDAPCSGSGVIRRHP 337
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI LRR++DI L+ ++L+ LW +L PGG LL+ TCS+ E+E Q F +H +
Sbjct: 338 DIKVLRRESDILPLAVLQKRLLSALWPLLAPGGMLLYCTCSILPIENERQIHEFLLSHPE 397
Query: 297 SIR--LNSPGQLLPTVNKK-----QDYDGFFYSLFQKR 327
L P L TV ++ ++ DGF+Y+ +KR
Sbjct: 398 GQERPLEVPWGLPQTVGRQLLTGTEELDGFYYACLEKR 435
>gi|423203174|ref|ZP_17189752.1| ribosomal RNA small subunit methyltransferase B [Aeromonas veronii
AER39]
gi|404613403|gb|EKB10425.1| ribosomal RNA small subunit methyltransferase B [Aeromonas veronii
AER39]
Length = 430
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 116/335 (34%), Positives = 183/335 (54%), Gaps = 35/335 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR F R E+ ++ + +P W +++ Y + +W+ I++ +++P
Sbjct: 113 LINGVLRNFQRS-AEVILLRIDRVPSIRLGHPEWLTKRLRQAYHD--EWEFIMEANNQRP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTI--IGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ +R N ++ + + + ++G+ G I L P ++K+P F G CS+QD
Sbjct: 170 PMWIRNNSQRQSRDAMLARMAEAGINAVAGEEGEDCILLERPCDVTKLPGFEVGDCSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQ AA LLD + G +VLDAC+APGGKT HLLE +++VD + +RL + ENL
Sbjct: 230 GAAQQAAALLDPQPGEWVLDACAAPGGKTAHLLERQPKLAGVVAVDADENRLKRVQENLD 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
R+ L A +I D + +++ FDRIL D PC+ +GV+RR+P
Sbjct: 290 RIGLSAKVIHGDAAAPE----------------QWWPEGQFDRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLRR DI++L++ +ILN LW LK GG LL+ TCS+ EE+ +Q F KD
Sbjct: 334 DIKWLRRDQDIRELAELQRRILNALWGKLKSGGTLLYATCSVLPEENRDQIRAFLAATKD 393
Query: 297 SIRL--------NSPG-QLLPTVNKKQDYDGFFYS 322
+ + + PG Q LP + + DGF+Y+
Sbjct: 394 AKLVPLHEQDTPDCPGRQFLPG---EAEMDGFYYA 425
>gi|422659067|ref|ZP_16721496.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. lachrymans
str. M302278]
gi|331017689|gb|EGH97745.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. lachrymans
str. M302278]
Length = 448
Score = 187 bits (475), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 116/338 (34%), Positives = 169/338 (50%), Gaps = 35/338 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R GE ++ + +P W +K +P QW+ I + P
Sbjct: 113 LLNAVLRNAQRD-GEALLIELEHDPVVRTAHPRWLQKALKAAWPE--QWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R Y +LLK +GLE + I L P + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHHRRDQYLELLKTAGLEASACTFSQDGIVLAEPCDVRSLPGFAEGWISVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQLAA LL++ G VLDAC APGGKTCHLLE+ +++VD RL + ENL
Sbjct: 230 EAAQLAADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLSGVVAVDLEAKRLVRVRENLD 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A LI +D + +++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLDAELIAADARETA----------------QWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ +DI L+ ++L+ LW L+ GG L++ TCS E+ + F
Sbjct: 334 DIKLTRQLDDIAALATLQGELLDALWPTLQVGGMLVYATCSTLPTENTDVIEAFLARTSG 393
Query: 297 SIRLNSPGQL-LPTVNKKQ-----------DYDGFFYS 322
+ L+ GQ P KQ +DGF+Y+
Sbjct: 394 ARELDIAGQAGQPPAGIKQPHGRQLLAQQGGHDGFYYA 431
>gi|397685164|ref|YP_006522483.1| 16S rRNA methyltransferase B [Pseudomonas stutzeri DSM 10701]
gi|395806720|gb|AFN76125.1| 16S rRNA methyltransferase B [Pseudomonas stutzeri DSM 10701]
Length = 448
Score = 187 bits (475), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 114/339 (33%), Positives = 178/339 (52%), Gaps = 42/339 (12%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ GE +++ + +P W +K +P W+ I + P
Sbjct: 116 LLNAVLRRAQRE-GEALLAELEHDPVIRVAHPRWLQKSLKAHWPE--HWEAICAANNVHP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLA---IKLHTPISISKIPKFFNGFCSIQ 117
P+ LR+N+ + +Y L+ +G+E P + I+L P + ++P F G S+Q
Sbjct: 173 PMMLRVNRLQLDRDAYLDELRAAGIEA-FACPFSEDGIRLAAPCDVQQLPGFAEGRVSVQ 231
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE----IADIKLISVDNNLSRLNMISE 173
D AAQLAA LL+++ G VLDAC APGGKTCH+LE +A++ +++D RL + E
Sbjct: 232 DEAAQLAASLLELKPGQRVLDACCAPGGKTCHILEHEPGLAEV--VALDLEPKRLQRVQE 289
Query: 174 NLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVR 233
NL+RL L+ATL +D + R++ K F RIL D PC+ +GV+R
Sbjct: 290 NLERLRLEATLTAAD----------------ARDTERWWDGKPFQRILLDAPCSATGVIR 333
Query: 234 RNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKN 293
R+PDI R+ DI L+ ++L+ LW L+ GG LL+ TCS+ E+ E F
Sbjct: 334 RHPDIKLARQAEDIAPLATLQGEMLDALWPTLEVGGVLLYATCSVLPTENREVIEAFLAR 393
Query: 294 HKDSIRLNSPG----------QLLPTVNKKQDYDGFFYS 322
+ L+ G QLLP ++ +DGF+Y+
Sbjct: 394 MPGARELDLAGDFGLKQHHGRQLLP---QEGGHDGFYYA 429
>gi|398989733|ref|ZP_10692966.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM24]
gi|399012776|ref|ZP_10715094.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM16]
gi|398115020|gb|EJM04815.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM16]
gi|398146959|gb|EJM35683.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM24]
Length = 436
Score = 187 bits (475), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 115/337 (34%), Positives = 174/337 (51%), Gaps = 38/337 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ IF +++ +P W +K +P QW+ I + + P
Sbjct: 113 LLNAVLRNAQRESETIF-AELERDPVVRTAHPRWLQKSLKAFWPE--QWEAICEANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R + +Y LL ++G+ T + I L + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHHSRDAYLGLLTEAGIAATPCVYSRDGIILEAAADVRSLPGFAEGWISVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEI--ADIKLISVDNNLSRLNMISENLK 176
AAQLAA LLD+ G VLDAC APGGKTCH+LE A +++VD RL + ENL+
Sbjct: 230 EAAQLAADLLDLAPGQRVLDACCAPGGKTCHILEAEPALAGVVAVDLEAKRLVRVKENLE 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A LI +D + +++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLNAELIAAD----------------GRDTEKWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ +DI L++ ++L+ +WK L+ GG LL+ TCS E+ E F +
Sbjct: 334 DIKLTRQPDDIVALAQLQGELLDAMWKTLEVGGILLYATCSTLPTENTEVIAAFLERTPG 393
Query: 297 SIRLNSPGQLLPTVNKKQ-----------DYDGFFYS 322
+ L+ L T KQ +DGF+Y+
Sbjct: 394 ARELD----LATTAGIKQPHGRQLLAQQGGHDGFYYA 426
>gi|423204432|ref|ZP_17190988.1| ribosomal RNA small subunit methyltransferase B [Aeromonas veronii
AMC34]
gi|404627297|gb|EKB24102.1| ribosomal RNA small subunit methyltransferase B [Aeromonas veronii
AMC34]
Length = 430
Score = 187 bits (475), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 116/335 (34%), Positives = 183/335 (54%), Gaps = 35/335 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR F R E+ ++ + +P W +++ Y + +W+ I++ +++P
Sbjct: 113 LINGVLRNFQRS-AEVILLRIDRVPSIRLGHPEWLTKRLRQAYHD--EWEFIMEANNQRP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTI--IGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ +R N ++ + + + ++G+ G I L P ++K+P F G CS+QD
Sbjct: 170 PMWIRNNSQRQSRDAMLARMAEAGINAVAGEEGEDCILLERPCDVTKLPGFEVGDCSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQ AA LLD + G +VLDAC+APGGKT HLLE +++VD + +RL + ENL
Sbjct: 230 GAAQQAAALLDPQPGEWVLDACAAPGGKTAHLLERQPKLAGVVAVDADENRLKRVQENLD 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
R+ L A +I D + +++ FDRIL D PC+ +GV+RR+P
Sbjct: 290 RIGLTAKVIHGDAAAPE----------------QWWPEGQFDRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLRR DI++L++ +ILN LW LK GG LL+ TCS+ EE+ +Q F KD
Sbjct: 334 DIKWLRRDQDIRELAELQRRILNALWGKLKSGGTLLYATCSVLPEENRDQIRAFLAATKD 393
Query: 297 SIRL--------NSPG-QLLPTVNKKQDYDGFFYS 322
+ + + PG Q LP + + DGF+Y+
Sbjct: 394 AKLVPLHEQDTPDCPGRQFLPG---EAEMDGFYYA 425
>gi|83642941|ref|YP_431376.1| sun protein [Hahella chejuensis KCTC 2396]
gi|83630984|gb|ABC26951.1| sun protein [Hahella chejuensis KCTC 2396]
Length = 447
Score = 187 bits (475), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 114/341 (33%), Positives = 175/341 (51%), Gaps = 36/341 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++N +LR F R+K E+ + Y P W ++++ YP+ Q +L + +
Sbjct: 119 LVNGVLRSFQRRKDELLARSEADPSLRY-AMPRWLLDKLSAAYPH--QLDELLAASNAQA 175
Query: 61 PLTLRINQRKTTLISYNKLLKKS--GLETTIIGPLAIKLHTPISISKIPKFFN-GFCSIQ 117
PLTLR+N +K Y L++ G + ++ + +S++P FF+ G CS+Q
Sbjct: 176 PLTLRVNLQKVQREDYLNQLREVEVGAHSCEWAETGVQCEHAVDVSRLPGFFDAGLCSVQ 235
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLK 176
D AAQL+A L+D + VLDAC APGGKT LLE I + +VD + R + L+
Sbjct: 236 DEAAQLSASLVDPQPNERVLDACCAPGGKTAALLERTPTISVTAVDVDPERQLRTRDTLQ 295
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L+A + +DI + +++ FDRIL D PC+ +GV+RR+P
Sbjct: 296 RLQLEADVRTADIGDLQ----------------QWWDGTPFDRILLDAPCSATGVIRRHP 339
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI LRR DI +L++ K+L LW LKP G L++ TCS+ EE+E F + D
Sbjct: 340 DIKLLRRSEDIPQLAELQLKLLRTLWTTLKPEGLLVYATCSILKEENEHIIERFIADATD 399
Query: 297 SIRLNSPG----------QLLPTVNKKQDYDGFFYSLFQKR 327
+ + G QLLP +DGFFY+ +K+
Sbjct: 400 AEVIPIEGKYGIQSPFGVQLLPVTGG---HDGFFYARLRKQ 437
>gi|398961100|ref|ZP_10678498.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM30]
gi|398153051|gb|EJM41558.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM30]
Length = 436
Score = 187 bits (474), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 116/337 (34%), Positives = 171/337 (50%), Gaps = 38/337 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ IF +++ +P W +K +P QW+ I + P
Sbjct: 113 LLNAVLRNAQRESETIF-AELERDPVVRTAHPRWLQKSLKAFWPE--QWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R + +Y LL +G+ T + I L + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHHSRDAYLGLLTDAGIAATPCVYSRDGIVLEAAADVRNLPGFAEGWISVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEI--ADIKLISVDNNLSRLNMISENLK 176
AAQLAA LLD+ G VLDAC APGGKTCH+LE A +++VD RL + ENL+
Sbjct: 230 EAAQLAADLLDLAPGQRVLDACCAPGGKTCHILEAEPALAGVVAVDLEAKRLVRVKENLE 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A LI +D + ++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLSAELIAAD----------------GRDTAAWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ +DI L++ ++L+ LWK L+ GG LL+ TCS E+ E F +
Sbjct: 334 DIKLTRQADDIAALAQLQGELLDALWKTLEVGGILLYATCSTLPTENTEVIAAFLERTPG 393
Query: 297 SIRLNSPGQLLPTVNKKQ-----------DYDGFFYS 322
+ L+ L T KQ +DGF+Y+
Sbjct: 394 ARELD----LATTAGIKQPHGRQLLAQQGGHDGFYYA 426
>gi|258545467|ref|ZP_05705701.1| ribosomal RNA small subunit methyltransferase B [Cardiobacterium
hominis ATCC 15826]
gi|258519300|gb|EEV88159.1| ribosomal RNA small subunit methyltransferase B [Cardiobacterium
hominis ATCC 15826]
Length = 418
Score = 187 bits (474), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 122/334 (36%), Positives = 174/334 (52%), Gaps = 39/334 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INAILR R++ ++ + N + N P W Q YP + I ++P
Sbjct: 113 LINAILRRVQRERAH-WQQALENA--ATANLPDWLRGQ----YP--AEEAAIAASNSRQP 163
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N T L + P AI L ++ IP F +G S+QDAA
Sbjct: 164 PLTLRLNH---THDRAAWLAAHGDARANPLHPQAITLTHGHNVQHIPGFNDGAVSVQDAA 220
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKRLN 179
AQ AA LL ++G ++LDAC+APGGKT HLLE+A +L+++D++ RL + ENL RL
Sbjct: 221 AQHAATLLAPQNGEHILDACAAPGGKTGHLLELAPTAELLALDHDRDRLVRVQENLDRLG 280
Query: 180 LKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIP 239
L+ATL +D + K FD IL D PC+GSGV+RR+PDI
Sbjct: 281 LRATLKAADAADTAAWW----------------DGKPFDAILLDAPCSGSGVLRRHPDIA 324
Query: 240 WLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIR 299
WLR D+K+L+ ++L LW LKPGG+LL+ TC++ E+++ F H D+ R
Sbjct: 325 WLRTPADLKRLAASQRQLLERLWPTLKPGGRLLYTTCTILPAENQDNIRAFLAAHPDA-R 383
Query: 300 LNSPGQLLPTVN-------KKQDYDGFFYSLFQK 326
L + LP D DGF+Y++ K
Sbjct: 384 LQT--LALPADTGYGSLHLPDDDGDGFYYAMLHK 415
>gi|383318249|ref|YP_005379091.1| ribosomal RNA small subunit methyltransferase RsmB [Frateuria
aurantia DSM 6220]
gi|379045353|gb|AFC87409.1| ribosomal RNA small subunit methyltransferase RsmB [Frateuria
aurantia DSM 6220]
Length = 432
Score = 187 bits (474), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 110/340 (32%), Positives = 181/340 (53%), Gaps = 38/340 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NAILR + R++ E +++ + P W + + +P + I G+ +P
Sbjct: 115 LVNAILRRWQRERVERL-ARLDADETTRLACPAWLLQAFRQDWPA--EADRIARAGNAEP 171
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPIS--ISKIPKFFNGFCSIQD 118
PL LR+N+R+ ++ + L+ +G E + L+ L P S ++++P F G ++QD
Sbjct: 172 PLMLRVNRRQIGREAFLQSLQDAGYEAALHPWLSDALILPHSTDVTRMPGFATGHFAVQD 231
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRL 178
AAQ+AA LL GM VLDAC+APGGKTCH+LE A++ + +++ + R I +NL RL
Sbjct: 232 GAAQIAADLLQADPGMRVLDACAAPGGKTCHVLERAEVGMTALEFDAGRALRIQQNLDRL 291
Query: 179 NLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDI 238
L+A + + D S+ ++ + ++RIL D PC+ +GV+RR D+
Sbjct: 292 QLQARVTVGDASEPAA----------------WWDGRTYERILIDAPCSATGVIRRRADV 335
Query: 239 PWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAII--FSKNHKD 296
RR +DI L +IL LW +L PGG+L++ TCSL +E QA++ F +
Sbjct: 336 RLHRRASDIAALQAQQGRILAALWPLLAPGGRLVYATCSLL--RAENQAVVEPFLAARPE 393
Query: 297 SIRL---------NSPG-QLLPTVNKKQDYDGFFYSLFQK 326
+ L PG Q+LP D DG +Y++ +K
Sbjct: 394 ARALAIELPVGQTAGPGWQVLP---GDGDLDGMYYAVLEK 430
>gi|331007627|ref|ZP_08330769.1| Ribosomal RNA small subunit methyltransferase B [gamma
proteobacterium IMCC1989]
gi|330418567|gb|EGG93091.1| Ribosomal RNA small subunit methyltransferase B [gamma
proteobacterium IMCC1989]
Length = 442
Score = 187 bits (474), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 114/348 (32%), Positives = 179/348 (51%), Gaps = 41/348 (11%)
Query: 1 MINAILREFLRK--KGEIFKSKMYNIHESY-----WNYPIWWINQVKITYPNFFQWKNIL 53
+IN +LR F R+ G+ +I++ ++P W + +P Q K I
Sbjct: 116 LINGVLRSFQREHMSGDDSIVSANDINQKIPSADKISHPQWLQEAIVKAWPA--QSKAIF 173
Query: 54 DVGHKKPPLTLRINQRKTTLISYNKLL-KKSGLETTIIGPLAIKLHTPISISKIPKFFNG 112
++ PP TLR+NQ+ ++ Y +LL +TT + + L + ++ +P F G
Sbjct: 174 SANNQHPPFTLRVNQQHASVSEYTQLLVDDRSFQTTSYSDVGLTLEKAVDVNSLPNFAQG 233
Query: 113 FCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHL--LEIADIKLISVDNNLSRLNM 170
S+QD AAQLAAPLL + VLDAC APGGKTCH+ +E + L+ +D RL
Sbjct: 234 HSSVQDEAAQLAAPLLQLAPNQRVLDACCAPGGKTCHIGEMEPSLSALVGLDLEERRLVR 293
Query: 171 ISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSG 230
+ ENL+RLN+ A +I D + + ++ + FDRIL D PC+ +G
Sbjct: 294 VKENLQRLNINADIICGDGTAPDT----------------WWDGQLFDRILLDAPCSATG 337
Query: 231 VVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIF 290
V+RR+PDI LR+ D+ ++ ++LN LW +L GG LL+ TCS+ +E+ + F
Sbjct: 338 VIRRHPDIKLLRQAQDVSDVAALQLRLLNALWPLLADGGILLYATCSILPQENTQVIEQF 397
Query: 291 SKNHKDSIR--------LNSP--GQLLPTVNKKQDYDGFFYSLFQKRK 328
NH ++ + P QLLP + + +DGF+Y+ K K
Sbjct: 398 IANHDNAQHDVIEAEWGITQPYGRQLLP---QTKGHDGFYYARLIKSK 442
>gi|332304407|ref|YP_004432258.1| sun protein [Glaciecola sp. 4H-3-7+YE-5]
gi|410640999|ref|ZP_11351524.1| ribosomal RNA small subunit methyltransferase B [Glaciecola
chathamensis S18K6]
gi|332171736|gb|AEE20990.1| sun protein [Glaciecola sp. 4H-3-7+YE-5]
gi|410139359|dbj|GAC09711.1| ribosomal RNA small subunit methyltransferase B [Glaciecola
chathamensis S18K6]
Length = 437
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 110/335 (32%), Positives = 181/335 (54%), Gaps = 37/335 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR F+R++ +++ + + P W ++ YP + IL+ K
Sbjct: 122 LVNAVLRNFIRQE---MANELPDNEQILSGQPKWLYKKLLTAYPE--KHTPILEAMQVKA 176
Query: 61 PLTLRINQRKTTLISYNKLLKKSGL--ETTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+NQ + + Y +LL ++ + E P + L I+ +P + G+ ++QD
Sbjct: 177 PIWLRVNQNQKSTDEYCRLLDENDIFYERQDEQPQGLILSKGCDITTLPGYDEGWFAVQD 236
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQLAA LL+ + +LD C+APGGKTCH+LE+ +++D + SRL I ENL
Sbjct: 237 GAAQLAANLLNSQPNERILDCCAAPGGKTCHILELEPKIASCVAMDIDPSRLQRIEENLT 296
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL +A+LI D S+ ++ + FDRIL D PC+ +G++RR+P
Sbjct: 297 RLGHQASLICGDASEPKA----------------WWDGEQFDRILLDAPCSATGIIRRHP 340
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR+ +DI L KI++ +W +LKPGG +L+ TCS+ E++ Q F + D
Sbjct: 341 DIKWLRKSSDIDTLVALQAKIIDAIWPLLKPGGTMLYATCSILPAENQLQISAFLERTAD 400
Query: 297 SI--------RLNSPG-QLLPTVNKKQDYDGFFYS 322
+ ++ PG Q+LP ++ DGF+Y+
Sbjct: 401 AALDPEFNNDAIDKPGRQILPG---EKHMDGFYYA 432
>gi|254515962|ref|ZP_05128022.1| ribosomal RNA small subunit methyltransferase B [gamma
proteobacterium NOR5-3]
gi|219675684|gb|EED32050.1| ribosomal RNA small subunit methyltransferase B [gamma
proteobacterium NOR5-3]
Length = 433
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 119/341 (34%), Positives = 179/341 (52%), Gaps = 37/341 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR F R++ E + + + S +P W N + +P + I + P
Sbjct: 116 LLNAVLRRFQREE-EALLAALSDAQASA--HPDWLWNALGQHWPEHRE--QIARANNSYP 170
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTI--IGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+TLR+N + SY + L +G+ + P A+ L + ++ +P F G CS+QD
Sbjct: 171 PMTLRVNLSRVDRDSYLQQLADAGITAHPGRLSPAALTLEQAVDVTLLPGFAEGLCSVQD 230
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE--IADIKLISVDNNLSRLNMISENLK 176
AAQLAA LL R G +LDAC+APGGK+CH+LE +D L ++D + RL+ + ENL
Sbjct: 231 EAAQLAAQLLAPRPGERILDACAAPGGKSCHILEQLPSDASLTAMDISEERLHRVQENLD 290
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L ATLI+ D + FD +L D+PC+ +GV+RR+P
Sbjct: 291 RLGLAATLIVGD---------------GGHPPTALVDRGPFDAMLLDVPCSATGVIRRHP 335
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
D+ LRR+ D + ILN LW +L PGG+LL+VTCSL EE+ + F D
Sbjct: 336 DVKVLRREEDAVSFAAQQRAILNGLWPLLAPGGRLLYVTCSLLPEENSQAVAEFLARQSD 395
Query: 297 ---------SIRLNSPG-QLLPTVNKKQDYDGFFYSLFQKR 327
S + + G QLLP V+ DG ++++ +KR
Sbjct: 396 ASEEALHVASAQACAQGLQLLPDVSGT---DGLYFAMLRKR 433
>gi|289627007|ref|ZP_06459961.1| sun protein [Pseudomonas syringae pv. aesculi str. NCPPB 3681]
gi|289647928|ref|ZP_06479271.1| sun protein [Pseudomonas syringae pv. aesculi str. 2250]
gi|422583063|ref|ZP_16658192.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. aesculi str.
0893_23]
gi|330867899|gb|EGH02608.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. aesculi str.
0893_23]
Length = 441
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 114/338 (33%), Positives = 169/338 (50%), Gaps = 35/338 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R GE ++ + +P W +K +P QW+ I + P
Sbjct: 113 LLNAVLRNAQRD-GEALLIELEHDPVVRTAHPRWLQKALKAAWPE--QWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R + Y +LL +GL+ + I L P + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHNSRDQYLELLNNAGLQASACTFSQDGIVLAEPCDVRSLPGFAEGWISVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQLAA LL++ G +LDAC APGGKTCHLLE+ +++VD RL + ENL
Sbjct: 230 EAAQLAADLLELAPGQRILDACCAPGGKTCHLLEVQPQLSGVVAVDLEAKRLVRVRENLD 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A LI +D + +++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLDAELIAADARETA----------------QWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ +DI L+ ++L+ LW L+ GG L++ TCS E+ E F
Sbjct: 334 DIKLTRQADDIVALAALQGELLDALWPTLQVGGMLVYATCSTLPTENTEVIEAFLARTSG 393
Query: 297 SIRLNSPGQL-LPTVNKKQ-----------DYDGFFYS 322
+ L+ GQ P KQ +DGF+Y+
Sbjct: 394 ARELDIAGQAGQPPAGIKQARGRQLLAQQGGHDGFYYA 431
>gi|424920643|ref|ZP_18344004.1| RsmB [Pseudomonas fluorescens R124]
gi|404301803|gb|EJZ55765.1| RsmB [Pseudomonas fluorescens R124]
Length = 436
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 116/337 (34%), Positives = 170/337 (50%), Gaps = 38/337 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ IF +++ +P W +K +P QW+ I + P
Sbjct: 113 LLNAVLRNAQRESETIF-AELERDPVVRTAHPRWLQKSLKAFWPE--QWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R + +Y LL +G+ T + I L + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHHSRDAYLGLLSDAGIAATPCVYSRDGIVLEAAADVRSLPGFAEGWISVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEI--ADIKLISVDNNLSRLNMISENLK 176
AAQLAA LLD+ G VLDAC APGGKTCH+LE A +++VD RL + ENL+
Sbjct: 230 EAAQLAADLLDLAPGQRVLDACCAPGGKTCHILEAEPALAGVVAVDLEAKRLVRVKENLE 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A LI +D + ++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLSAELIAAD----------------GRDTAAWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ +DI L+ ++L+ LWK L+ GG LL+ TCS E+ E F +
Sbjct: 334 DIKLTRQADDIAALALLQGELLDALWKTLEVGGILLYATCSTLPTENTEVIAAFLERTPG 393
Query: 297 SIRLNSPGQLLPTVNKKQ-----------DYDGFFYS 322
+ L+ L T KQ +DGF+Y+
Sbjct: 394 ARELD----LATTAGIKQPHGRQLLAQQGGHDGFYYA 426
>gi|389737500|ref|ZP_10190929.1| ribosomal RNA small subunit methyltransferase RsmB [Rhodanobacter
sp. 115]
gi|388434862|gb|EIL91790.1| ribosomal RNA small subunit methyltransferase RsmB [Rhodanobacter
sp. 115]
Length = 431
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 112/335 (33%), Positives = 171/335 (51%), Gaps = 28/335 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR + R++ + + + + +P W + +P Q ++ + +P
Sbjct: 115 LVNAVLRRWQRERESLLVALDADPRTRH-AHPAWLATAITRDWPA--QADTVMAADNCEP 171
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLA--IKLHTPISISKIPKFFNGFCSIQD 118
PL LR N+R + + + L+ G T LA I L + ++++P F +G ++QD
Sbjct: 172 PLMLRANRRFGSREALLERLRVDGQTATSHDWLADGIVLPHSVDVTRLPGFDDGAFAVQD 231
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRL 178
AAQ+AA L ++R G+ VLDAC+APGGK CHLLE ADI L +++ + R I +NL RL
Sbjct: 232 GAAQVAADLAELRDGLRVLDACAAPGGKACHLLERADIDLTALEFDAQRGERIRQNLMRL 291
Query: 179 NLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDI 238
L A L++ D ++K FDRIL D PC+ +GV+R PD+
Sbjct: 292 RLNAKLVMGDAGAPK----------------GWWKGLPFDRILIDAPCSATGVLRHRPDV 335
Query: 239 PWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD-- 296
RR +DI L +IL LW +L PGG+LL++TCSL E+E F H D
Sbjct: 336 RLHRRGSDIPALVAQQQRILAALWPLLAPGGRLLYITCSLLRAENEGVIAPFLAAHADAK 395
Query: 297 SIRLNSPGQLLPTVN-----KKQDYDGFFYSLFQK 326
+I P TV D DG +Y+ +K
Sbjct: 396 AIPFELPVGQAATVGWQILPGDGDLDGMYYAAIEK 430
>gi|118602253|ref|YP_903468.1| sun protein [Candidatus Ruthia magnifica str. Cm (Calyptogena
magnifica)]
gi|118567192|gb|ABL01997.1| 16S rRNA m(5)C-967 methyltransferase [Candidatus Ruthia magnifica
str. Cm (Calyptogena magnifica)]
Length = 421
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 116/331 (35%), Positives = 189/331 (57%), Gaps = 35/331 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NAILR+ R K +I + +++ +++P W + ++K YPN F+ I + +
Sbjct: 111 LVNAILRKIDRDK-KILQQQVH------YSHPSWLVKKIKRDYPNDFE--TIFKQNNTQA 161
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+T+R++ L Y + L++ G+ + I P A+ L ++ + KF G C +QD
Sbjct: 162 PMTIRVH-TSLNLDHYQQQLQQEGISSQKLAITPQALVLDKATTVFNLVKFEQGACYVQD 220
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQL+ PLL+ ++ +LDACSAPGGK HL E+A K+I++DN+ RL IS+N +R
Sbjct: 221 ASAQLSVPLLNPKNTDLILDACSAPGGKATHLCELAPQCKVIALDNDNKRLIKISQNAQR 280
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L + ++I I + N + + ++ FD+IL D PC+ +GV+RR+PD
Sbjct: 281 LKI------TNIQTI--------LGSAQNQDW--WDSQLFDKILFDAPCSATGVIRRHPD 324
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I LR+ DI L IL NLW+MLKP G LL+ TCS+ E+E+Q F H D+
Sbjct: 325 IKLLRKPKDITTLVVLQKNILENLWQMLKPSGILLYATCSILKVENEQQIKYFLNTHYDA 384
Query: 298 --IRLNSPGQLLPTVNKKQ----DYDGFFYS 322
I++ + TV ++Q ++DGF+Y+
Sbjct: 385 KEIKIELDWGINTTVGRQQLPTDNFDGFYYA 415
>gi|257485586|ref|ZP_05639627.1| sun protein [Pseudomonas syringae pv. tabaci str. ATCC 11528]
gi|422595420|ref|ZP_16669708.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. lachrymans
str. M301315]
gi|422682536|ref|ZP_16740801.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. tabaci str.
ATCC 11528]
gi|330985725|gb|EGH83828.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. lachrymans
str. M301315]
gi|331011875|gb|EGH91931.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. tabaci str.
ATCC 11528]
Length = 448
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 114/338 (33%), Positives = 169/338 (50%), Gaps = 35/338 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R GE ++ + +P W +K +P QW+ I + P
Sbjct: 113 LLNAVLRNAQRD-GEALLIELEHDPVVRTAHPRWLQKALKAAWPE--QWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R + Y +LL +GL+ + I L P + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHNSRDQYLELLNTAGLQASACTFSQDGIVLAEPCDVRSLPGFTEGWISVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQLAA LL++ G VLDAC APGGKTCHLLE+ +++VD RL + ENL
Sbjct: 230 EAAQLAADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLSGVVAVDLEAKRLVRVRENLD 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A LI +D + +++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLDAELIAADARET----------------AQWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ +DI L+ ++L+ LW L+ GG L++ TCS E+ + F
Sbjct: 334 DIKLTRQADDIVALAALQGELLDALWPTLQVGGMLVYATCSTLPTENTDVIEAFLARTSG 393
Query: 297 SIRLNSPGQL-LPTVNKKQ-----------DYDGFFYS 322
+ L+ GQ P KQ +DGF+Y+
Sbjct: 394 ARELDIAGQAGQPPAGIKQAHGRQLLAQQGGHDGFYYA 431
>gi|374621128|ref|ZP_09693662.1| 16S rRNA m(5)C-967 methyltransferase [gamma proteobacterium HIMB55]
gi|374304355|gb|EHQ58539.1| 16S rRNA m(5)C-967 methyltransferase [gamma proteobacterium HIMB55]
Length = 431
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 111/346 (32%), Positives = 177/346 (51%), Gaps = 48/346 (13%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHES-YWNYPIWWINQVKITYPNFFQWKNILDVGHKK 59
+INA LR + R+K + + + ES P W +K YP+ Q + G K
Sbjct: 112 LINACLRRYQREKTVLLE----QLGESEQAALPGWLYKVLKKQYPDHLQ--GVAQAGRHK 165
Query: 60 PPLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDA 119
PPLTLR+N +K++ Y K L +G+E +G + L + + +S+IP F G S+QD
Sbjct: 166 PPLTLRVNGQKSSRDDYLKALSSAGIEAMPVGAYGLTLSSAVPVSQIPGFSEGIASVQDE 225
Query: 120 AAQLAAPLLDIRS-------GMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMIS 172
+AQLA L+ S G+ VLD CSAPG K CHL E+ ++ ++D + SRL +
Sbjct: 226 SAQLAGTLIASASAGAGAPLGIRVLDVCSAPGSKACHLAELG-AEVTAMDISASRLARVE 284
Query: 173 ENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVV 232
EN +RL L ++ D ++ FD +L D+PC+ +GV+
Sbjct: 285 ENAERLGLSIKTLVGDGRELG----------------ELTAENAFDLVLLDVPCSATGVI 328
Query: 233 RRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEE------- 285
RRNPD+ +R K+DI + ++ +L + WK ++P G+LL++TCSL E+E+
Sbjct: 329 RRNPDVKVIRLKSDINQFAELQQALLESAWKRVRPSGQLLYITCSLLPAENEDIVSNFLA 388
Query: 286 -----QAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 326
+AI S++ I + Q LP+ + DG +Y + +K
Sbjct: 389 VTADAKAIPLSESF--GIAKSVGRQALPSASGG---DGLYYCMLEK 429
>gi|71736115|ref|YP_272333.1| sun protein [Pseudomonas syringae pv. phaseolicola 1448A]
gi|416013323|ref|ZP_11561483.1| sun protein [Pseudomonas syringae pv. glycinea str. B076]
gi|416022746|ref|ZP_11567839.1| sun protein [Pseudomonas syringae pv. glycinea str. race 4]
gi|422406594|ref|ZP_16483619.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. glycinea
str. race 4]
gi|71556668|gb|AAZ35879.1| sun protein [Pseudomonas syringae pv. phaseolicola 1448A]
gi|320326680|gb|EFW82725.1| sun protein [Pseudomonas syringae pv. glycinea str. B076]
gi|320331346|gb|EFW87289.1| sun protein [Pseudomonas syringae pv. glycinea str. race 4]
gi|330881831|gb|EGH15980.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. glycinea
str. race 4]
Length = 448
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 114/338 (33%), Positives = 169/338 (50%), Gaps = 35/338 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R GE ++ + +P W +K +P QW+ I + P
Sbjct: 113 LLNAVLRNAQRD-GEALLIELEHDPVVRTAHPRWLQKALKAAWPE--QWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R + Y +LL +GL+ + I L P + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHNSRDQYLELLNTAGLQASACTFSQDGIVLAEPCDVRSLPGFAEGWISVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQLAA LL++ G VLDAC APGGKTCHLLE+ +++VD RL + ENL
Sbjct: 230 EAAQLAADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLSGVVAVDLEAKRLVRVRENLD 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A LI +D + +++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLDAELIAADARETA----------------QWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ +DI L+ ++L+ LW L+ GG L++ TCS E+ + F
Sbjct: 334 DIKLTRQLDDIAALASLQGELLDALWPTLQVGGMLVYATCSTLPTENTDVIEAFLARTSG 393
Query: 297 SIRLNSPGQL-LPTVNKKQ-----------DYDGFFYS 322
+ L+ GQ P KQ +DGF+Y+
Sbjct: 394 ARELDIAGQAGQPPAGIKQAHGRQLLAQQGGHDGFYYA 431
>gi|395495799|ref|ZP_10427378.1| 16S rRNA methyltransferase B [Pseudomonas sp. PAMC 25886]
Length = 436
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 173/333 (51%), Gaps = 30/333 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ E +++ + +P W +K +P QW+ I + P
Sbjct: 113 LLNAVLRRAQRES-EALLAELEHDPVVRTAHPRWLQKSLKAFWPQ--QWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R T +Y LL ++G+ T + I L P + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHHTRDAYLSLLSEAGVAATACVYSQDGIVLTEPGDVRNLPGFAEGWISVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEI-ADIK-LISVDNNLSRLNMISENLK 176
AAQLAA LLD+ G VLDAC APGGKTCH++E+ AD+ +++VD RL + ENL
Sbjct: 230 EAAQLAADLLDLAPGQRVLDACCAPGGKTCHIMEVQADLAGVVAVDLEAKRLVRVRENLA 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A LI +D + ++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLSAELIAAD----------------GRDTAAWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ +DI L+ ++L+ LW L+ GG LL+ TCS E+ E F
Sbjct: 334 DIKLTRQPDDIAALAVLQGELLDALWPTLEVGGILLYATCSTLPTENTEVIDAFLARTSG 393
Query: 297 SIRLN---SPGQLLPT----VNKKQDYDGFFYS 322
+ L+ G P + ++ +DGF+Y+
Sbjct: 394 ARELDLDIQAGIKQPHGRQLLAQEGGHDGFYYA 426
>gi|365922492|ref|ZP_09446691.1| ribosomal RNA small subunit methyltransferase B [Cardiobacterium
valvarum F0432]
gi|364573090|gb|EHM50607.1| ribosomal RNA small subunit methyltransferase B [Cardiobacterium
valvarum F0432]
Length = 419
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 123/341 (36%), Positives = 173/341 (50%), Gaps = 51/341 (14%)
Query: 1 MINAILREFLRKKGE----IFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVG 56
+INAILR R++ + ++ +N+ W P + Q I N
Sbjct: 113 LINAILRRTQRERKHWQHALTTAQTHNL--PNWLLPHYPAEQTAIAAVNTL--------- 161
Query: 57 HKKPPLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSI 116
PPLTLR++QR L + + P A+ LH +++ IP F +G S+
Sbjct: 162 --PPPLTLRLHQRHDRAA---WLTEHPEARANPLHPQAVTLHQGSNVAHIPGFRDGDTSV 216
Query: 117 QDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENL 175
QDA+AQ AA +L R G +LDAC+APGGKTCHLLE+A + + ++D++ +RL + ENL
Sbjct: 217 QDASAQHAATILVPRDGERILDACAAPGGKTCHLLELAPNAHVTALDHDAARLARVKENL 276
Query: 176 KRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRN 235
RL +ATL +D + I FD IL D PC+GSGV+RR+
Sbjct: 277 DRLQQQATLSHADAADTAAWWDGIP----------------FDAILLDAPCSGSGVLRRH 320
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLR D+ +L +LN LW LKPGG+LL+ TCS+ E+++ F H
Sbjct: 321 PDIAWLRTVADLHRLPGQQRHLLNRLWPTLKPGGRLLYTTCSILPAENQDNIRAFLATHP 380
Query: 296 DSI--RLNSP-------GQL-LPTVNKKQDYDGFFYSLFQK 326
D+ LN P G L LP D DGF+Y+L K
Sbjct: 381 DAYLQPLNLPACRDTGYGSLHLPDT----DGDGFYYALLYK 417
>gi|422628604|ref|ZP_16693812.1| 16S rRNA methyltransferase B, partial [Pseudomonas syringae pv.
pisi str. 1704B]
gi|330937254|gb|EGH41269.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. pisi str.
1704B]
Length = 390
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 114/338 (33%), Positives = 167/338 (49%), Gaps = 35/338 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R GE ++ + +P W +K +P QW+ I + P
Sbjct: 62 LLNAVLRNAQRD-GEALLIELEHDPVVRTAHPRWLQKALKAAWPE--QWEAICAANNAHP 118
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R Y +LL +GL+ + I L P + +P F G+ S+QD
Sbjct: 119 PMILRVNRRHNRRDQYLELLNTAGLQASACTFSQDGIVLAEPCDVRSLPGFAEGWISVQD 178
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQLAA LL++ G VLDAC APGGKTCHLLE+ +++VD RL + ENL
Sbjct: 179 EAAQLAADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLSGVVAVDLEAKRLVRVRENLD 238
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A LI +D +++ K F RIL D PC+ +GV+RR+P
Sbjct: 239 RLGLDAELIAAD----------------ARETAQWWDGKPFQRILLDAPCSATGVIRRHP 282
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ +DI L+ ++L+ LW L+ GG L++ TCS E+ + F
Sbjct: 283 DIKLTRQADDIAALATLQGELLDALWPTLQVGGMLVYATCSTLPTENTDVIEAFLARTSG 342
Query: 297 SIRLNSPGQL-LPTVNKKQ-----------DYDGFFYS 322
+ L+ GQ P KQ +DGF+Y+
Sbjct: 343 ARELDIAGQAGQPPAGIKQAHGRQLLAQQGGHDGFYYA 380
>gi|398976377|ref|ZP_10686283.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM25]
gi|398139213|gb|EJM28214.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM25]
Length = 436
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 112/333 (33%), Positives = 174/333 (52%), Gaps = 30/333 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ IF +++ +P W +K +P QW+ I + + P
Sbjct: 113 LLNAVLRNAQREHEAIF-AELERDPVVRTAHPRWLQKSLKAFWPE--QWEAICEANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGL--ETTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R + +Y LL ++G+ + I L + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHHSRDAYLGLLTEAGIAAQPCTFSRDGIVLDAAADVRSLPGFAEGWISVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEI--ADIKLISVDNNLSRLNMISENLK 176
AAQLAA LLD+ G VLDAC APGGKTCH+LE A +++VD RL + ENL+
Sbjct: 230 EAAQLAADLLDLAPGQRVLDACCAPGGKTCHILEAEPALAGVVAVDLEAKRLVRVKENLE 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A LI +D + ++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLNAELIAAD----------------GRDTAAWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ +DI L++ ++L+ +WK L+ GG LL+ TCS E+ E F +
Sbjct: 334 DIKLTRQADDIAALAQLQGELLDAMWKTLEVGGILLYATCSTLPTENTEVIAAFLERTPG 393
Query: 297 SIRLN---SPGQLLPT----VNKKQDYDGFFYS 322
+ L+ + G P + ++ +DGF+Y+
Sbjct: 394 ARELDLATAAGIKQPHGRQLLAQQGGHDGFYYA 426
>gi|374851128|dbj|BAL54097.1| ribosomal RNA small subunit methyltransferase B [uncultured gamma
proteobacterium]
Length = 431
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 117/342 (34%), Positives = 189/342 (55%), Gaps = 39/342 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R++ + K+ + +E+ ++P W +++ +P ++ H P
Sbjct: 112 LINALLRAYQRQRDALEKAAEAD-YEASVSHPAWLRQRIEQAWPRQAAAVLAANLAH--P 168
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P +R+N + + +Y + L GL++ + + A++L P+ + ++P F G S+QD
Sbjct: 169 PFAVRVNLARVSRAAYAQRLLAQGLKSQEVAAVDSALRLDRPVPVEELPGFAQGLVSVQD 228
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAAQLAAPLL ++ G VLD C+APGGKT H+LE ++++VD + RL + ENL
Sbjct: 229 AAAQLAAPLLAMQPGQRVLDVCAAPGGKTLHILESCPELAEVVAVDVSQERLQGVRENLA 288
Query: 177 RLNL--KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRR 234
R K LI +D + ++ ++F+RIL D PCT SGVVRR
Sbjct: 289 RAGAAGKVRLICADARDPS-----------------WWDGRHFERILVDAPCTASGVVRR 331
Query: 235 NPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH 294
+PDI LRR++D+ L+ +IL +W +L GG+LL+ TCSL EE+E Q F H
Sbjct: 332 HPDIKLLRRESDVAALAARQREILTAVWPLLARGGRLLYATCSLLPEENEAQIRAFLAEH 391
Query: 295 KD--SIRLNSP--------GQLLPTVNKKQDYDGFFYSLFQK 326
D ++ +++ Q+LP +QD DGFFY+ +K
Sbjct: 392 PDARAVPIHAAWGQVTGWGRQILPG---EQDMDGFFYACLEK 430
>gi|421140893|ref|ZP_15600889.1| potassium transporter peripheral membrane component [Pseudomonas
fluorescens BBc6R8]
gi|404508095|gb|EKA22069.1| potassium transporter peripheral membrane component [Pseudomonas
fluorescens BBc6R8]
Length = 436
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 176/333 (52%), Gaps = 30/333 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ E +++ + +P W +K +P QW+ I + P
Sbjct: 113 LLNAVLRRAQRES-EALLAELEHDPVVRTAHPRWLQKSLKAFWPE--QWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R T +Y LL ++G+ T + I L P + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHHTRDAYLTLLGEAGVAATACVYSQDGIVLTEPGDVRNLPGFAEGWISVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEI-ADIK-LISVDNNLSRLNMISENLK 176
AAQLAA LLD+ G VLDAC APGGKTCH++E+ AD+ +++VD RL + ENL
Sbjct: 230 EAAQLAADLLDLAPGQRVLDACCAPGGKTCHIMEVQADLAGVVAVDLEAKRLVRVRENLA 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A LI +D + ++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLSAELIAAD----------------GRDTATWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEE--QAIIFSKNH 294
DI R+ +DI L+ ++L+ LW L+ GG LL+ TCS E+ E +A + +
Sbjct: 334 DIKLTRQPDDIAALAVLQGELLDALWPTLEVGGILLYATCSTLPTENTEVIEAFLARTSG 393
Query: 295 KDSIRLN-SPGQLLPT----VNKKQDYDGFFYS 322
+ L+ G P + ++ +DGF+Y+
Sbjct: 394 ARELDLDIQAGIKQPHGRQLLAQEGGHDGFYYA 426
>gi|146329596|ref|YP_001209088.1| rRNA SAM-dependent methyltransferase, Fmu [Dichelobacter nodosus
VCS1703A]
gi|146233066|gb|ABQ14044.1| rRNA SAM-dependent methyltransferase, Fmu [Dichelobacter nodosus
VCS1703A]
Length = 418
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 117/345 (33%), Positives = 175/345 (50%), Gaps = 56/345 (16%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+ NA+LR R++ + N N P W + +Q +D +P
Sbjct: 112 LTNAVLRRVQRERSACLQILEEN---KARNIPAWLLPA--------YQKDGDVDAFIMRP 160
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL---AIKLHTPISISKIPKFFNGFCSIQ 117
P+T+R+ +T + + + G + PL A+ + I + +P F +G S+Q
Sbjct: 161 PMTVRVRLPQTA----TQWIAQHGANARL-NPLHQQAVTFNQAIGVEDLPDFASGGVSVQ 215
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
DA AQ AA LL R+G +LDAC+APGGKT HLLE+A LI++D+ RL + ENLK
Sbjct: 216 DAMAQWAATLLQPRAGERILDACAAPGGKTGHLLELAPQCTLIALDHAADRLERVQENLK 275
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL+L A +D + + +Y FD IL D PC+GSGV+RR+P
Sbjct: 276 RLHLNAHCQTADAADLA----------------SWYDGHAFDAILLDAPCSGSGVIRRHP 319
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR +D+K+L K ++L+ LW+ LK GG+LL+ TCS+ E+++ F H++
Sbjct: 320 DIAWLRSDSDLKQLPKTQYRLLDTLWQTLKIGGRLLYTTCSILPRENQQLIEQFLYTHRE 379
Query: 297 SIRLNSPGQLLPTVNKK-------------QDYDGFFYSLFQKRK 328
+ QL P K D DGFFY+L +KR+
Sbjct: 380 A-------QLRPITLPKGLDTGHGWLHYPDADGDGFFYALLEKRE 417
>gi|304313374|ref|YP_003812972.1| ribosomal RNA small subunit methyltransferase B [gamma
proteobacterium HdN1]
gi|301799107|emb|CBL47350.1| Ribosomal RNA small subunit methyltransferase B [gamma
proteobacterium HdN1]
Length = 492
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 114/344 (33%), Positives = 188/344 (54%), Gaps = 40/344 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++N ILR R+K ++ ++ + + +P W ++++K +P+ + +L+ +++
Sbjct: 124 LVNGILRRVQREKSQL-ETALPDSDAIRSAHPQWLVDKLKAAWPDHY--AAMLEANNQQA 180
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
PLTLR+N RK + Y L+ + + + P I+L ++ ++P + G+ S+QD
Sbjct: 181 PLTLRVNLRKQSREQYLTELRAKNINASPCSLSPAGIRLERSANVVELPGYAEGWFSVQD 240
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRL 178
AAQLAA LL +G VLDAC+APGGKT HLLE ADI +++D + R I +NL+RL
Sbjct: 241 EAAQLAAQLLAPHTGERVLDACAAPGGKTTHLLEHADIHCVAIDADPRRCERIHQNLERL 300
Query: 179 NLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDI 238
L A + D+ + + FDRIL D PC+ +G++RR+PDI
Sbjct: 301 QLSAEVHALDLQSYATQPEVMP----------------FDRILLDAPCSATGIIRRHPDI 344
Query: 239 PWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEE------------- 285
WLRR++DI L++ +L + +LK GG LL+ TCS+ +E++
Sbjct: 345 KWLRRQSDINALAEQQLSLLKTAFALLKEGGTLLYATCSVLPQENDRIVARFLAETPAAI 404
Query: 286 -QAIIFSKNHKDSIRLNSPG--QLLPTVNKKQDYDGFFYSLFQK 326
QA+ F + + +P QLLPTV Q +DGFFY++ ++
Sbjct: 405 LQALQFPSQIPPANGIPTPTGFQLLPTV---QGHDGFFYAMLRR 445
>gi|237801648|ref|ZP_04590109.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. oryzae str.
1_6]
gi|331024507|gb|EGI04563.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. oryzae str.
1_6]
Length = 441
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 115/338 (34%), Positives = 167/338 (49%), Gaps = 35/338 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R GE ++ + +P W +K +P QW+ I + P
Sbjct: 113 LLNAVLRNAQRD-GEALLIELEHDPVVRTAHPRWLQKALKAAWPE--QWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R + Y + L+ +GLE + I L P + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHDSRDHYLERLRTAGLEASACTFSQDGIVLAEPCDVRSLPGFAEGWISVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADI--KLISVDNNLSRLNMISENLK 176
AAQLAA LL++ G VLDAC APGGKTCHLLE +++VD RL + ENL
Sbjct: 230 EAAQLAADLLELAPGQRVLDACCAPGGKTCHLLEAQPQLGGVVAVDLEAKRLVRVRENLD 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A LI +D + ++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLNAELIAAD----------------ARDTATWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ +DI L+ ++L+ LW L+ GG L++ TCS E+ E F
Sbjct: 334 DIKLTRQLDDIAALASLQGELLDALWPTLQVGGMLVYATCSTLPTENTEVIEAFLARTSG 393
Query: 297 SIRLNSPGQL-LPTVNKKQ-----------DYDGFFYS 322
+ L+ GQ P KQ +DGF+Y+
Sbjct: 394 ARELDIAGQAGQPPAGIKQPHGRQLLAQQGGHDGFYYA 431
>gi|422643834|ref|ZP_16706973.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. maculicola
str. ES4326]
gi|330957387|gb|EGH57647.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. maculicola
str. ES4326]
Length = 441
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 114/338 (33%), Positives = 167/338 (49%), Gaps = 35/338 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R GE ++ + +P W +K +P QW+ I + P
Sbjct: 113 LLNAVLRNAQRD-GEALLIELEHDPVVRTAHPRWLQKALKAAWPE--QWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R + Y +LL +GLE + I L P + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHHSRDQYLELLNTAGLEASACTFSQDGIVLAEPCDVRSLPGFAEGWISVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQLAA LL++ G VLDAC APGGKTCHLLE+ +++VD RL + ENL
Sbjct: 230 EAAQLAADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLSAVVAVDLEAKRLVRVRENLD 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A LI +D + ++ F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLDAELIAAD----------------ARDTASWWDGTPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ +DI L+ ++L+ LW L+ GG L++ TCS E+ + F
Sbjct: 334 DIKLTRQLDDIAALATLQGELLDALWPTLQVGGMLVYATCSTLPTENTDVIEAFLARTSG 393
Query: 297 SIRLNSPGQ-LLPTVNKKQ-----------DYDGFFYS 322
+ L+ GQ P KQ +DGF+Y+
Sbjct: 394 ARELDIAGQDGQPAAGIKQAHGRQLLAQQGGHDGFYYA 431
>gi|422606585|ref|ZP_16678593.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. mori str.
301020]
gi|330890235|gb|EGH22896.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. mori str.
301020]
Length = 448
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 114/338 (33%), Positives = 168/338 (49%), Gaps = 35/338 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R GE ++ + +P W +K +P QW+ I + P
Sbjct: 113 LLNAVLRNAQRD-GEALLIELEHDPVVRTAHPRWLQKALKAAWPE--QWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R Y +LL +GL+ + I L P + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHHRRDQYLELLNTAGLQASACTFSQDGIVLAEPCDVRSLPGFTEGWISVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQLAA LL++ G VLDAC APGGKTCHLLE+ +++VD RL + ENL
Sbjct: 230 EAAQLAADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLSGVVAVDLEAKRLVRVRENLD 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A LI +D + +++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLDAELIAADARETA----------------QWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ +DI L+ ++L+ LW L+ GG L++ TCS E+ + F
Sbjct: 334 DIKLTRQADDIVALAALQGELLDALWPTLQVGGMLVYATCSTLPTENTDVIEAFLARTSG 393
Query: 297 SIRLNSPGQL-LPTVNKKQ-----------DYDGFFYS 322
+ L+ GQ P KQ +DGF+Y+
Sbjct: 394 ARELDIAGQAGQPPAGIKQAHGRQLLAQQGGHDGFYYA 431
>gi|330806740|ref|YP_004351202.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|327374848|gb|AEA66198.1| Ribosomal RNA small subunit methyltransferase B [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
Length = 436
Score = 184 bits (467), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 117/334 (35%), Positives = 173/334 (51%), Gaps = 32/334 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR R+ E +++ + +P W +K +P QW+ I + P
Sbjct: 113 LINAVLRRAQRES-ETLLAELEHDPVVRTAHPRWLQKSLKAFWPE--QWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTII--GPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R T +Y LL ++G+ I L TP + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHHTRDAYLALLGEAGIPAVPCQYSRDGIVLETPGDVRALPGFAEGWISVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKL---ISVDNNLSRLNMISENL 175
AAQLAA LL++ G VLDAC APGGKTCH+LE A+ KL ++VD RL + ENL
Sbjct: 230 EAAQLAADLLELAPGQRVLDACCAPGGKTCHILE-AEPKLAGVVAVDLEAKRLVRVKENL 288
Query: 176 KRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRN 235
+RL L+A LI +D + ++ K F RIL D PC+ +GV+RR+
Sbjct: 289 ERLGLEAELIAAD----------------GRDTATWWDGKPFQRILLDAPCSATGVIRRH 332
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI R+ +DI L+ ++L+ LW L+ GG LL+ TCS E+ E F
Sbjct: 333 PDIKLTRQPDDIAALAVLQGELLDALWPTLEVGGMLLYATCSTLPTENTEVIEAFLARTP 392
Query: 296 DSIRLNSPGQL-LPTVNKKQ------DYDGFFYS 322
+ L+ Q L + +Q +DGF+Y+
Sbjct: 393 GARELDIASQAGLKQPHGRQLLAQEGGHDGFYYA 426
>gi|440743507|ref|ZP_20922816.1| 16S rRNA methyltransferase B [Pseudomonas syringae BRIP39023]
gi|440375272|gb|ELQ11982.1| 16S rRNA methyltransferase B [Pseudomonas syringae BRIP39023]
Length = 441
Score = 184 bits (467), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 114/338 (33%), Positives = 168/338 (49%), Gaps = 35/338 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R GE ++ + +P W +K +P QW+ I + P
Sbjct: 113 LLNAVLRNAQRD-GEALLIELEHDPVVRTAHPRWLQKALKAAWPE--QWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R Y +LL +GL+ + I L P + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHHRRDQYLELLNTAGLQASACTFSQDGIVLAEPCDVRSLPGFAEGWISVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQLAA LL++ G VLDAC APGGKTCHLLE+ +++VD RL + ENL
Sbjct: 230 EAAQLAADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLSGVVAVDLEAKRLVRVRENLD 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A LI +D + +++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLDAELIAADARETA----------------QWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ +DI L+ ++L+ LW L+ GG L++ TCS E+ + F
Sbjct: 334 DIKLTRQADDIVALAALQGELLDALWPTLQVGGMLVYATCSTLPTENTDVIEAFLARTSG 393
Query: 297 SIRLNSPGQL-LPTVNKKQ-----------DYDGFFYS 322
+ L+ GQ P KQ +DGF+Y+
Sbjct: 394 ARELDIAGQAGQPPAGIKQAHGRQLLAQQGGHDGFYYA 431
>gi|119503584|ref|ZP_01625667.1| sun protein [marine gamma proteobacterium HTCC2080]
gi|119460646|gb|EAW41738.1| sun protein [marine gamma proteobacterium HTCC2080]
Length = 438
Score = 184 bits (467), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 118/343 (34%), Positives = 178/343 (51%), Gaps = 44/343 (12%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNY-PIWWINQVKITYPNFFQWKNILDVGHKK 59
+IN LR + R+KG + + ES N P W + +P+ Q I +
Sbjct: 116 LINGCLRNYQRQKGALED----QLTESQSNALPDWLWQAICKQWPD--QASEIAGASREH 169
Query: 60 PPLTLRINQRKTTLISYNKLLKKSGLETTIIGPLA--IKLHTPISISKIPKFFNGFCSIQ 117
PP+TLR+N ++ + Y L+ + + I +A I L TP +S IP F G+ S+Q
Sbjct: 170 PPMTLRVNLQRGSRADYVSTLQNADIPVAINPHIATAITLQTPRPVSSIPGFLEGWSSVQ 229
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLK 176
DA+AQLAA L + + DAC+APGGKTCH+LE A K+++ D + RL + EN
Sbjct: 230 DASAQLAAQFLQPNNDESIFDACAAPGGKTCHVLECAPKAKVLAADISDQRLESLQENST 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RLNL + + D ++ ++ + FD ILAD+PC+ +GV+RRNP
Sbjct: 290 RLNLPLDVKVVDATQASVT----------------LGPRQFDAILADVPCSATGVIRRNP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK- 295
DI R+ DI + IL LW ++KPGG+LL+VTCSL E+E +I + +
Sbjct: 334 DIKITRKAADIATFHQQQRDILEGLWPLVKPGGRLLYVTCSLL--EAENDNVIEAAQSQL 391
Query: 296 ----------DSIRLNS--PGQLLPTVNKKQDYDGFFYSLFQK 326
++R N+ Q LPT+N + DG ++SL +K
Sbjct: 392 PQCEVMPLAGGTLRFNTRFGLQTLPTLN---NGDGLYFSLLKK 431
>gi|77456243|ref|YP_345748.1| Fmu, rRNA SAM-dependent methyltransferase [Pseudomonas fluorescens
Pf0-1]
gi|77380246|gb|ABA71759.1| 16S rRNA m(5)C-967 methyltransferase [Pseudomonas fluorescens
Pf0-1]
Length = 436
Score = 184 bits (467), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 114/337 (33%), Positives = 172/337 (51%), Gaps = 38/337 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ IF +++ +P W +K +P QW+ I + + P
Sbjct: 113 LLNAVLRNAQREHEAIF-AELERDPVVRTAHPRWLQKSLKAFWPE--QWEAICEANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGL--ETTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R + +Y LL ++G+ + I L + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHHSRDAYLGLLTEAGIAAQPCTFSRDGIVLEAAADVRSLPGFAEGWISVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEI--ADIKLISVDNNLSRLNMISENLK 176
AAQLAA LLD+ G VLDAC APGGKTCH+LE A +++VD RL + ENL+
Sbjct: 230 EAAQLAADLLDLAPGQRVLDACCAPGGKTCHILEAEPALAGVVAVDLEAKRLVRVKENLE 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A LI +D + ++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLNAELIAAD----------------GRDTAAWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ +DI L++ ++L+ +WK L+ GG LL+ TCS E+ E F +
Sbjct: 334 DIKLTRQADDIVALAQLQGELLDAMWKTLEVGGILLYATCSTLPTENTEVIGAFLERTPG 393
Query: 297 SIRLNSPGQLLPTVNKKQ-----------DYDGFFYS 322
+ L+ L T KQ +DGF+Y+
Sbjct: 394 ARELD----LATTAGIKQPHGRQLLAQQGGHDGFYYA 426
>gi|3288669|dbj|BAA31227.1| Fmv [Vibrio alginolyticus]
Length = 225
Score = 184 bits (467), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 95/241 (39%), Positives = 145/241 (60%), Gaps = 25/241 (10%)
Query: 94 AIKLHTPISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE- 152
AIKL P + K+P F G+ S+QDAAAQL+ L + G +LD C+APGGKT H+LE
Sbjct: 3 AIKLAAPCDVMKLPGFDKGWVSVQDAAAQLSINYLKPQDGELILDCCAAPGGKTAHILER 62
Query: 153 IADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFY 212
+ +++++D + +RL + ENLKRLNL+A ++ D N ++
Sbjct: 63 TSGSEVVAIDCDDTRLKRVHENLKRLNLQAKVVCGD----------------ARNPQEWW 106
Query: 213 KNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLL 272
+ + FDRIL D PC+ +GV+RR+PDI WLRR +DI L++ +I + +W LKPGG ++
Sbjct: 107 QGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQSEIFDAMWTQLKPGGTMV 166
Query: 273 FVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFYSLFQKR 327
+ TCS+ +E+ EQ F D+ L+S PG Q+LP ++D DGF+Y++ K
Sbjct: 167 YATCSITPQENVEQVKAFLARTADAQLLDSDPDQPGRQILP---GEEDMDGFYYAVLTKT 223
Query: 328 K 328
+
Sbjct: 224 R 224
>gi|298160849|gb|EFI01866.1| Ribosomal RNA small subunit methyltransferase B [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
Length = 441
Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 114/338 (33%), Positives = 166/338 (49%), Gaps = 35/338 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R GE ++ + +P W +K +P W+ I + P
Sbjct: 113 LLNAVLRNAQRD-GEALLIELEHDPVVRTAHPRWLQKALKAAWPE--HWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R Y +LL +GL+ + I L P + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHHRRDQYLELLNTAGLQASACTFSQDGIVLAEPCDVRSLPGFAEGWISVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQLAA LL++ G VLDAC APGGKTCHLLE+ +++VD RL + ENL
Sbjct: 230 EAAQLAADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLSGVVAVDLEAKRLVRVRENLD 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A LI +D +++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLDAELIAAD----------------ARETAQWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ +DI L+ ++L+ LW L+ GG L++ TCS E+ E F
Sbjct: 334 DIKLTRQADDIVALAALQGELLDALWPTLQVGGMLVYATCSTLPTENTEVIEAFLARTSG 393
Query: 297 SIRLNSPGQL-LPTVNKKQ-----------DYDGFFYS 322
+ L+ GQ P KQ +DGF+Y+
Sbjct: 394 ARELDIAGQAGQPPAGIKQAHGRQLLAQQGGHDGFYYA 431
>gi|409422325|ref|ZP_11259428.1| 16S rRNA methyltransferase B [Pseudomonas sp. HYS]
Length = 436
Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 115/336 (34%), Positives = 168/336 (50%), Gaps = 36/336 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ EIF +++ +P W +K +P W+ I + P
Sbjct: 113 LLNAVLRRAQRESSEIF-AELERDPVVRTAHPRWLQKSLKAFWPE--HWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTII--GPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R + +Y +LL+++GLE I L + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHHSRDAYLELLREAGLEAAPCQFSGDGILLAEACDVRGLPGFDQGWISVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQLAA LLD+ G VLDAC APGGKTCHLLE ++++D RL + ENL
Sbjct: 230 EAAQLAADLLDLAPGQRVLDACCAPGGKTCHLLEAQAGLDAVVAIDLEAKRLTRVRENLD 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A LI D + ++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLDAQLIACD----------------ARDTASWWDGKGFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKN--- 293
DI R+ +DI L+ ++L+ LW L+ GG LL+ TCS E+ E F
Sbjct: 334 DIKLTRQADDIAALASLQGELLDALWPTLEVGGILLYATCSTLPTENTEVIEAFLARTPG 393
Query: 294 -------HKDSIRLNSPGQLLPTVNKKQDYDGFFYS 322
+ IR QLL ++ +DGF+Y+
Sbjct: 394 ARELDLATQAGIRQPHGRQLL---AQEGGHDGFYYA 426
>gi|423694585|ref|ZP_17669075.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
fluorescens Q8r1-96]
gi|388004506|gb|EIK65819.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
fluorescens Q8r1-96]
Length = 436
Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 118/337 (35%), Positives = 174/337 (51%), Gaps = 38/337 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR R+ E +++ + +P W +K +P QW+ I + P
Sbjct: 113 LINAVLRRAQRES-ETLLAELEHDPVVRTAHPRWLQKSLKAFWPE--QWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL-----AIKLHTPISISKIPKFFNGFCS 115
P+ LR+N+R T +Y LL ++G+ P I L TP + +P F G+ S
Sbjct: 170 PMILRVNRRHHTRDAYLALLGEAGIPAI---PCQYSRDGIVLETPGDVRALPGFAEGWIS 226
Query: 116 IQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKL---ISVDNNLSRLNMIS 172
+QD AAQLAA LL++ G VLDAC APGGKTCH+LE A+ KL ++VD RL +
Sbjct: 227 VQDEAAQLAADLLELAPGQRVLDACCAPGGKTCHILE-AEPKLAGVVAVDLEAKRLVRVK 285
Query: 173 ENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVV 232
ENL+RL L+A LI +D + ++ K F RIL D PC+ +GV+
Sbjct: 286 ENLERLGLEAELIAAD----------------GRDTATWWDGKPFQRILLDAPCSATGVI 329
Query: 233 RRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSK 292
RR+PDI R+ +DI L+ ++L+ LW L+ GG LL+ TCS E+ E F
Sbjct: 330 RRHPDIKLTRQPDDIAALAVLQGELLDALWPTLEVGGMLLYATCSTLPTENTEVIEAFLA 389
Query: 293 NHKDSIRLNSPGQL-LPTVNKKQ------DYDGFFYS 322
+ L+ Q L + +Q +DGF+Y+
Sbjct: 390 RTPGARELDIASQAGLKQPHGRQLLAQEGGHDGFYYA 426
>gi|395800086|ref|ZP_10479365.1| 16S rRNA methyltransferase B [Pseudomonas sp. Ag1]
gi|395335928|gb|EJF67790.1| 16S rRNA methyltransferase B [Pseudomonas sp. Ag1]
Length = 436
Score = 184 bits (466), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 113/333 (33%), Positives = 176/333 (52%), Gaps = 30/333 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ E +++ + +P W +K +P QW+ I + P
Sbjct: 113 LLNAVLRRAQRES-EALLAELEHDPVVRTAHPRWLQKSLKAFWPE--QWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R T +Y LL ++G+ T + I L P + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHHTRDAYLTLLGEAGVAATACVYSQDGIVLTEPGDVRNLPGFAEGWISVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEI-ADIK-LISVDNNLSRLNMISENLK 176
AAQLAA LLD+ G VLDAC APGGKTCH++E+ AD+ +++VD RL + ENL
Sbjct: 230 EAAQLAADLLDLAPGQRVLDACCAPGGKTCHIMEVQADLAGVVAVDLEAKRLVRVRENLA 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A LI +D + ++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLSAELIAAD----------------GRDTATWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEE--QAIIFSKNH 294
DI R+ +DI L+ ++L+ LW L+ GG LL+ TCS E+ + +A + +
Sbjct: 334 DIKLTRQPDDIAALAVLQGELLDALWPTLEVGGILLYATCSTLPTENTDVIEAFLARTSG 393
Query: 295 KDSIRLN-SPGQLLPT----VNKKQDYDGFFYS 322
+ L+ G P + ++ +DGF+Y+
Sbjct: 394 ARELDLDIQAGIKQPHGRQLLAQEGGHDGFYYA 426
>gi|440719868|ref|ZP_20900291.1| 16S rRNA methyltransferase B [Pseudomonas syringae BRIP34876]
gi|440728127|ref|ZP_20908346.1| 16S rRNA methyltransferase B [Pseudomonas syringae BRIP34881]
gi|440362234|gb|ELP99434.1| 16S rRNA methyltransferase B [Pseudomonas syringae BRIP34881]
gi|440367108|gb|ELQ04177.1| 16S rRNA methyltransferase B [Pseudomonas syringae BRIP34876]
Length = 441
Score = 184 bits (466), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 114/338 (33%), Positives = 168/338 (49%), Gaps = 35/338 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R GE ++ + +P W +K +P QW+ I + P
Sbjct: 113 LLNAVLRNAQRD-GEALLIELEHDPVVRTAHPRWLQKALKAAWP--VQWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R Y +LL +GL+ + I L P + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHNRRDQYIELLNTAGLQASACTFSQDGIVLAEPCDVRLLPGFAEGWISVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADI--KLISVDNNLSRLNMISENLK 176
AAQLAA LL++ G VLDAC APGGKTCHLLE+ +++VD RL + ENL
Sbjct: 230 EAAQLAADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLNGVVAVDLEAKRLVRVRENLD 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A LI +D + +++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLDAELIAADARETA----------------QWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ +DI L+ ++L+ LW L+ GG L++ TCS E+ + F
Sbjct: 334 DIKLTRQADDIAALATLQGELLDALWPTLQVGGMLVYATCSTLPTENTDVIEAFLARTSG 393
Query: 297 SIRLNSPGQL-LPTVNKKQ-----------DYDGFFYS 322
+ L+ GQ P KQ +DGF+Y+
Sbjct: 394 ARELDIAGQAGQPPAGIKQAHGRQLLAQQGGHDGFYYA 431
>gi|422639925|ref|ZP_16703353.1| 16S rRNA methyltransferase B [Pseudomonas syringae Cit 7]
gi|330952317|gb|EGH52577.1| 16S rRNA methyltransferase B [Pseudomonas syringae Cit 7]
Length = 441
Score = 184 bits (466), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 114/338 (33%), Positives = 167/338 (49%), Gaps = 35/338 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R GE ++ + +P W +K +P QW+ I + P
Sbjct: 113 LLNAVLRNAQRD-GEALLIELEHDPVVRTAHPRWLQKALKAAWPE--QWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R Y +LL +GL+ + I L P + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHHRRDQYLELLNTAGLQASACTFSQDGIVLAEPCDVRSLPGFAEGWISVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQLAA LL++ G VLDAC APGGKTCHLLE+ +++VD RL + ENL
Sbjct: 230 EAAQLAADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLSGVVAVDLEAKRLVRVRENLD 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A LI +D + +++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLDAELIAADARETA----------------QWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ +DI L+ +L+ LW L+ GG L++ TCS E+ + F
Sbjct: 334 DIKLTRQADDIVALAALQGGLLDALWPTLQVGGMLVYATCSTLPTENTDVIEAFLARTSG 393
Query: 297 SIRLNSPGQL-LPTVNKKQ-----------DYDGFFYS 322
+ L+ GQ P KQ +DGF+Y+
Sbjct: 394 ARELDIAGQAGQPPAGIKQAHGRQLLAQQGGHDGFYYA 431
>gi|406872887|gb|EKD23235.1| hypothetical protein ACD_82C00190G0003, partial [uncultured
bacterium]
Length = 382
Score = 183 bits (465), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 126/331 (38%), Positives = 190/331 (57%), Gaps = 38/331 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR FLR++ +I +K+ + + +++P+W IN +K YP QWKNIL ++ P
Sbjct: 84 LVNAVLRNFLRQQ-KILLAKLESNEITKYSHPLWIINALKKAYPK--QWKNILIANNQYP 140
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
P+ LR+N+++ + Y KLL I L P +++ +P F +G S+QD +
Sbjct: 141 PMHLRVNKQQISQSDYLKLLPSQN----------ITLEKPRNVTDLPGFQDGLVSVQDLS 190
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRL 178
AQ LLD++ G VLDAC+APGGKT H+LE KLI D + RLN + ENL RL
Sbjct: 191 AQYTTTLLDLKPGQIVLDACAAPGGKTAHILETEPHLQKLIVCDIDELRLNKVRENLTRL 250
Query: 179 NLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDI 238
L D +I +K ++ DI N FDRIL D PC+GSGV+RR+PDI
Sbjct: 251 KL-------DYKEI-IKFIFCDITITHE-----LDNIIFDRILLDAPCSGSGVIRRHPDI 297
Query: 239 PWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESE---EQAIIFSKNHK 295
LR++ D++ ++Y +L LW LKP G L++ TCS++ EE+ E+ ++ + K
Sbjct: 298 KLLRQEQDVRNKAEYQLVLLKKLWPKLKPDGILVYSTCSVFPEENNLVIEKFLLLFPDAK 357
Query: 296 DSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 326
+ Q+LP K+ + DGFFYS+ K
Sbjct: 358 EIF----CKQILP---KQGEGDGFFYSVLCK 381
>gi|423689105|ref|ZP_17663625.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
fluorescens SS101]
gi|388000238|gb|EIK61567.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
fluorescens SS101]
Length = 436
Score = 183 bits (465), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 113/336 (33%), Positives = 172/336 (51%), Gaps = 36/336 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ E +++ + +P W +K +P QW+ I + P
Sbjct: 113 LLNAVLRRAQRES-EALLAELEHDPVVRTAHPRWLQKSLKAFWPE--QWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R + +Y +LL +G+ T + I L + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHHSRDAYLQLLADAGINATPCVYSTDGIVLEAAADVRSLPGFAEGWISVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQLAA LLD+ G VLDAC APGGKTCH+LE+ +++VD RL + ENL
Sbjct: 230 EAAQLAADLLDLAPGQRVLDACCAPGGKTCHILEVEKDLAGVVAVDLEAKRLVRVRENLT 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A LI +D + ++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLSAELIAAD----------------GRDTAAWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEE--QAIIFSKNH 294
DI R+ +DI L+ ++L+ LW L+ GG LL+ TCS E+ E QA + +
Sbjct: 334 DIKLTRQPDDIAALAVLQGELLDALWPTLEVGGILLYATCSTLPTENTEVIQAFLARTSG 393
Query: 295 KDSIRLNSPG--------QLLPTVNKKQDYDGFFYS 322
+ L + QLL ++ +DGF+Y+
Sbjct: 394 ARELDLATTAGIKQPHGRQLL---AQEGGHDGFYYA 426
>gi|384085891|ref|ZP_09997066.1| 16S rRNA methyltransferase B [Acidithiobacillus thiooxidans ATCC
19377]
Length = 432
Score = 183 bits (465), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 110/330 (33%), Positives = 177/330 (53%), Gaps = 29/330 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR FLR++ E ++++ + S+ P W +++ YP +W I ++
Sbjct: 126 LMNAVLRRFLRER-EALEAQLADPDLSH---PAWLAARLREAYPE--EWSAIAAANNRPA 179
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTII--GPLAIKLHTPISISKIPKFFNGFCSIQD 118
PL LR+N ++ + +Y +LL GL + A+ L I ++ +P + G+ ++QD
Sbjct: 180 PLWLRVNTQRVSPENYRELLLAQGLSCHGVDWSDAALCLPESIPVATLPGWDAGWVAVQD 239
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRL 178
AAAQ+AA +L +S +LDAC+APGGKT HL + +L ++D + RL + E L R
Sbjct: 240 AAAQMAAHILAPQSEERILDACAAPGGKTAHLWALGARRLDALDRSAERLQKLREALFRQ 299
Query: 179 NLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDI 238
A L +D + ++ + +D IL D PCTG GV+RR+PDI
Sbjct: 300 GAIAHLQAAD----------------AGDPESWWNGEPYDAILLDAPCTGVGVIRRHPDI 343
Query: 239 PWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSI 298
R+ D+++ ++L LW L+PGG+LL+ TCS+ EE+ Q F H+D+
Sbjct: 344 RLRRQAEDVQQAVAQQQRLLEALWGCLRPGGRLLYATCSILPEENLLQIRAFLARHEDAR 403
Query: 299 RLNSP--GQLLPTVNKKQDYDGFFYSLFQK 326
+ P GQ LP N D DGF+Y+L K
Sbjct: 404 QQAHPLTGQHLPGQN---DMDGFYYALLVK 430
>gi|292493781|ref|YP_003529220.1| sun protein [Nitrosococcus halophilus Nc4]
gi|291582376|gb|ADE16833.1| sun protein [Nitrosococcus halophilus Nc4]
Length = 440
Score = 183 bits (465), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 120/339 (35%), Positives = 180/339 (53%), Gaps = 32/339 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHE-SYWNYPIWWINQVKITYPNFFQWKNILDVGHKK 59
+INAILR +LR ++ HE ++ +P W + ++ ++P+ W I+ +
Sbjct: 120 LINAILRAYLRN--QVALQAQVATHEVAHSAHPRWLLEAIRRSWPD--DWSQIIAANNCH 175
Query: 60 PPLTLRINQRKTTLISYNKLLKKSGLETTII--GPLAIKLHTPISISKIPKFFNGFCSIQ 117
PPL+LR+N+ + + SY + L+++G+E I + L P ++ +P F G S+Q
Sbjct: 176 PPLSLRVNRLQGSRASYLQELERNGIEARAIPHTEWGVVLDQPRPVTTLPGFLEGRVSVQ 235
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADI--KLISVDNNLSRLNMISENL 175
D A Q APLL + G VLDAC+APGGKTCH+LE+ LI++D RL + NL
Sbjct: 236 DGAGQRVAPLLALAPGQRVLDACAAPGGKTCHILELEPQLETLIALDLEAVRLERLDSNL 295
Query: 176 KRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRN 235
KRL LKA + + ++ FDRIL D PC+GSGV+RR+
Sbjct: 296 KRLQLKAKAQV--------------VQGDAAQPQTWWDGIPFDRILLDAPCSGSGVIRRH 341
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI LRR+ DI L ++L+ LW +L PGG LL+ TCS+ +E+E+Q F H
Sbjct: 342 PDIKVLRRERDIPPLVVLQKRLLSALWPLLAPGGLLLYCTCSILPQENEQQIREFLLAHP 401
Query: 296 DSIR--LNSPGQLLPTVNKKQ------DYDGFFYSLFQK 326
+ L P LP + +Q DGF+Y+ +K
Sbjct: 402 EGKERPLEVPWG-LPQIPGRQLLTGAEGLDGFYYACLEK 439
>gi|88705380|ref|ZP_01103091.1| Ribosomal RNA small subunit methyltransferase B [Congregibacter
litoralis KT71]
gi|88700470|gb|EAQ97578.1| Ribosomal RNA small subunit methyltransferase B [Congregibacter
litoralis KT71]
Length = 434
Score = 183 bits (465), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 110/340 (32%), Positives = 184/340 (54%), Gaps = 37/340 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR F R + + + K+ + +P W + +P++ + I + P
Sbjct: 116 LLNAVLRRFQRDEATLTE-KLTAAQNAA--HPDWLWAALGEHWPDYRE--EIAAANNSHP 170
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTI--IGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+TLR+N + Y ++L ++G+ + + P A+ L + ++ +P F G CS+QD
Sbjct: 171 PMTLRVNLSRGGRDEYREMLDQAGIASQAGQLSPAALTLDQAVDVTSLPGFEAGLCSVQD 230
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEI--ADIKLISVDNNLSRLNMISENLK 176
AAQ+AA LL R+G +LDAC+APGGKT HLLE+ + ++L ++D + RL+ + ENL
Sbjct: 231 EAAQMAAQLLAPRAGERILDACAAPGGKTGHLLELQRSGMQLTAMDISEERLHRVRENLD 290
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L+A+L++ D ++ + + FD +L D+PC+ SGV+RR+P
Sbjct: 291 RLGLEASLLVGDGARPSAE---------------LKAQAPFDAMLLDVPCSASGVIRRHP 335
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
D+ LRR D ++ IL+ LW +L PGG+LL+V+CS+ E+ E F H D
Sbjct: 336 DVKILRRPEDTAGFARQQNAILDGLWPLLAPGGRLLYVSCSIMPGENSEVVAAFVSRHAD 395
Query: 297 ------SIRLNSPG----QLLPTVNKKQDYDGFFYSLFQK 326
++ + P QLLP N DG ++++ K
Sbjct: 396 AREEPLAMAASQPCAHGRQLLPRPNGS---DGLYFAMLYK 432
>gi|408479913|ref|ZP_11186132.1| 16S rRNA methyltransferase B [Pseudomonas sp. R81]
Length = 436
Score = 183 bits (465), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 111/333 (33%), Positives = 171/333 (51%), Gaps = 30/333 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ E +++ + +P W +K +P QW+ I + P
Sbjct: 113 LLNAVLRRAQRES-EALLAELEHDPVVRTAHPRWLQKSLKAFWPE--QWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R + +Y +LL +G+ T + I L + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHHSRDAYLQLLTDAGIGATPCVYSVDGIVLEAATDVRSLPGFAEGWISVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQLAA LLD+ G VLDAC APGGKTCH+LE+ + +++VD RL + ENL
Sbjct: 230 EAAQLAADLLDLAPGQRVLDACCAPGGKTCHILEVEKDLVGVVAVDLEAKRLVRVRENLA 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A LI +D + ++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLSAELIAAD----------------GRDTATWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ +DI L+ ++L+ LW L+ GG LL+ TCS E+ E F
Sbjct: 334 DIKLTRQPDDIAALAVLQGELLDALWPTLEVGGILLYATCSTLPTENTEVIEAFLARTSG 393
Query: 297 SIRLN---SPGQLLPT----VNKKQDYDGFFYS 322
+ L+ + G P + ++ +DGF+Y+
Sbjct: 394 ARELDLATTAGIRQPHGRQLLAQEGGHDGFYYA 426
>gi|388466964|ref|ZP_10141174.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
synxantha BG33R]
gi|388010544|gb|EIK71731.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
synxantha BG33R]
Length = 436
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 113/333 (33%), Positives = 171/333 (51%), Gaps = 30/333 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ E +++ + +P W +K +P QW+ I + P
Sbjct: 113 LLNAVLRRAQRES-EALLAELEHDPVVRTAHPRWLQKSLKAFWPE--QWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R + +Y +LL + + T + I L + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHHSRDAYLQLLADAAINATPCVYSTDGIVLEAATDVRSLPGFAEGWISVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQLAA LLD+ G VLDAC APGGKTCH+LE+ +++VD RL + ENL
Sbjct: 230 EAAQLAADLLDLAPGQRVLDACCAPGGKTCHILEVEKDLAGVVAVDLEAKRLVRVRENLA 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A LI +D N ++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLSADLIAAD----------------GRNTATWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEE--QAIIFSKNH 294
DI R+ +DI L+ ++L+ LW L+ GG LL+ TCS E+ E QA + +
Sbjct: 334 DIKLTRQPDDIAALAVLQGELLDALWPTLEVGGILLYATCSTLPTENTEVIQAFLARTSG 393
Query: 295 KDSIRL-NSPGQLLPT----VNKKQDYDGFFYS 322
+ L S G P + ++ +DGF+Y+
Sbjct: 394 ARELDLATSAGIKQPHGRQLLAQEGGHDGFYYA 426
>gi|254282952|ref|ZP_04957920.1| ribosomal RNA small subunit methyltransferase B [gamma
proteobacterium NOR51-B]
gi|219679155|gb|EED35504.1| ribosomal RNA small subunit methyltransferase B [gamma
proteobacterium NOR51-B]
Length = 416
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 112/341 (32%), Positives = 174/341 (51%), Gaps = 40/341 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESY-WNYPIWWINQVKITYPNFFQWKNILDVGHKK 59
++N +LR + R+ E+ N+ + P W Q+ +P+ I +
Sbjct: 99 LVNGVLRTYQRQTAELID----NLSPAEKAALPEWMYQQLAKEWPHHL--TKIAAASSSR 152
Query: 60 PPLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQ 117
PP++LRIN R + Y + L G+ + G A+ L PI + +P F G S+Q
Sbjct: 153 PPMSLRINTRLCSPEEYKQRLHAEGIAFSADGLSNTAVTLARPIDVESVPGFTAGQISVQ 212
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIK-LISVDNNLSRLNMISENL 175
D +AQLAA LLD + G VLDAC+APGGK+CH+ E ++K LI+ D + RL + N
Sbjct: 213 DVSAQLAAILLDAKPGETVLDACAAPGGKSCHIAERQPELKTLIAADIDAKRLEKVIANR 272
Query: 176 KRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRN 235
RL L I D + + + + + FD I+AD+PC+ +GV+RRN
Sbjct: 273 DRLGLGFDCIAMDAAHPGDE---LGVGR-------------FDAIVADVPCSATGVLRRN 316
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI R K DI+ ++ I + LW +LKPGG+LL+VTCS+ E++ Q F ++H+
Sbjct: 317 PDIKIHRGKTDIRHFAQQQTDITHGLWPLLKPGGRLLYVTCSILRAENDAQVEAFLEHHE 376
Query: 296 DS----------IRLNSPGQLLPTVNKKQDYDGFFYSLFQK 326
D+ I Q+LP + DG ++SL ++
Sbjct: 377 DAAVEPFDTEVGIATEYGQQVLPAA---EGGDGLYFSLIRR 414
>gi|378948017|ref|YP_005205505.1| protein RsmB [Pseudomonas fluorescens F113]
gi|359758031|gb|AEV60110.1| RsmB [Pseudomonas fluorescens F113]
Length = 436
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 116/334 (34%), Positives = 173/334 (51%), Gaps = 32/334 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR R+ E +++ + +P W +K +P QW+ I + P
Sbjct: 113 LINAVLRRAQRES-ETLLAELEHDPVVRTAHPRWLQKSLKAFWPE--QWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTII--GPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R T +Y LL ++G+ I L TP + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHHTRDAYLALLGEAGIPAIPCQYSRDGIVLETPGDVRALPGFAEGWISVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKL---ISVDNNLSRLNMISENL 175
AAQLAA LL++ G VLDAC APGGKTCH+LE A+ KL ++VD RL + ENL
Sbjct: 230 EAAQLAADLLELAPGQRVLDACCAPGGKTCHILE-AEPKLAGVVAVDLEAKRLVRVKENL 288
Query: 176 KRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRN 235
+RL L+A LI +D + ++ K F RIL D PC+ +GV+RR+
Sbjct: 289 ERLGLEAELIAAD----------------GRDTATWWDGKPFQRILLDAPCSATGVIRRH 332
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI R+ +DI L+ ++L+ LW L+ GG LL+ TCS E+ + F
Sbjct: 333 PDIKLTRQPDDIAALAVLQGELLDALWPTLEVGGMLLYATCSTLPTENTDVIEAFLARTP 392
Query: 296 DSIRLNSPGQL-LPTVNKKQ------DYDGFFYS 322
+ L+ Q L + +Q +DGF+Y+
Sbjct: 393 GARELDIASQAGLKQPHGRQLLAQEGGHDGFYYA 426
>gi|388544125|ref|ZP_10147414.1| 16S rRNA methyltransferase B [Pseudomonas sp. M47T1]
gi|388277953|gb|EIK97526.1| 16S rRNA methyltransferase B [Pseudomonas sp. M47T1]
Length = 437
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 111/333 (33%), Positives = 173/333 (51%), Gaps = 30/333 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ ++ + M +P W +K +P QW+ + + P
Sbjct: 113 LLNAVLRRAQREGNDLL-ADMERDPVVRTAHPRWLQKALKAFWPE--QWEAVCAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKS--GLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R + +Y +LLK++ G + I L + +P F +G+ S+QD
Sbjct: 170 PMILRVNRRHHSRDAYLQLLKQASVGASACVYSQDGIVLEQACDVRDLPGFADGWISVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEI--ADIKLISVDNNLSRLNMISENLK 176
AAQLAA LLD+ G VLDAC APGGKTCHLLE A ++++D RL + ENL
Sbjct: 230 EAAQLAADLLDLAPGQRVLDACCAPGGKTCHLLEAEPALQAVVAIDLEAKRLVRVRENLD 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L+A LI D + +++ + F+RIL D PC+ +GV+RR+P
Sbjct: 290 RLKLEAQLIACDARETA----------------QWWDGQTFNRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ +DI+ L+ ++L+ LW L+ GG LL+ TCS E+ E F
Sbjct: 334 DIKLTRQPDDIQALAVLQGELLDALWPTLEVGGVLLYATCSTLPTENTEVIEAFLARTPA 393
Query: 297 SIRLN---SPGQLLP----TVNKKQDYDGFFYS 322
+ L+ S G P + ++ +DGF+Y+
Sbjct: 394 ARELDLATSAGIRQPHGRQLLAQEGGHDGFYYA 426
>gi|398891389|ref|ZP_10644765.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM55]
gi|398187070|gb|EJM74424.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM55]
Length = 436
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 116/334 (34%), Positives = 173/334 (51%), Gaps = 32/334 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ IF +++ +P W +K +P QW+ I + P
Sbjct: 113 LLNAVLRNAQRESETIF-AELERDPVVRTAHPRWLQKSLKAFWPE--QWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R T +Y LL +G+ T + I L + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHHTRDAYLGLLTDAGIAATPCVYSRDGIMLEAATDVRSLPGFAEGWISVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKL---ISVDNNLSRLNMISENL 175
AAQLAA LLD+ G VLDAC APGGKTCH+LE A+ KL ++VD RL + ENL
Sbjct: 230 EAAQLAADLLDLAPGQRVLDACCAPGGKTCHILE-AEPKLAGVVAVDLEAKRLVRVRENL 288
Query: 176 KRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRN 235
+RL L A LI +D + T ++ K F RIL D PC+ +GV+RR+
Sbjct: 289 ERLKLSAELIAAD-------------GRDTQT---WWDGKPFQRILLDAPCSATGVIRRH 332
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI R+ +DI L+ ++L+ +W L+ GG LL+ TCS E+ E F
Sbjct: 333 PDIKLTRQPDDIAALALLQGELLDAMWSTLEVGGILLYATCSTLPTENTEVIEAFLARTP 392
Query: 296 DSIRLN---SPGQLLPT----VNKKQDYDGFFYS 322
+ L+ + G P + ++ +DGF+Y+
Sbjct: 393 GARELDLATAAGIKQPHGRQLLAQEGGHDGFYYA 426
>gi|398926154|ref|ZP_10662315.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM48]
gi|398171191|gb|EJM59102.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM48]
Length = 436
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 116/334 (34%), Positives = 173/334 (51%), Gaps = 32/334 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ IF +++ +P W +K +P QW+ I + P
Sbjct: 113 LLNAVLRNAQRESATIF-AELERDPVVRTAHPRWLQKSLKAFWPE--QWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R T +Y LL +G+ T + I L + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHHTRDAYLGLLTDAGIAATPCVYSRDGIVLDAAADVRSLPGFAEGWISVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKL---ISVDNNLSRLNMISENL 175
AAQLAA LLD+ G VLDAC APGGKTCH+LE A+ KL ++VD RL + ENL
Sbjct: 230 EAAQLAADLLDLAPGQRVLDACCAPGGKTCHILE-AEPKLAGVVAVDLEAKRLVRVRENL 288
Query: 176 KRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRN 235
+RL L A LI +D + T ++ K F RIL D PC+ +GV+RR+
Sbjct: 289 ERLKLSAELIAAD-------------GRDTQA---WWDGKPFQRILLDAPCSATGVIRRH 332
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI R+ +DI L+ ++L+ +W L+ GG LL+ TCS E+ E F
Sbjct: 333 PDIKLTRQPDDIAALAVLQGELLDAMWNTLEVGGILLYATCSTLPTENTEVIEAFLARTP 392
Query: 296 DSIRLN---SPGQLLPT----VNKKQDYDGFFYS 322
+ L+ + G P + ++ +DGF+Y+
Sbjct: 393 GARELDLATAAGIKQPHGRQLLAQEGGHDGFYYA 426
>gi|229587594|ref|YP_002869713.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
fluorescens SBW25]
gi|229359460|emb|CAY46301.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
fluorescens SBW25]
Length = 436
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 113/337 (33%), Positives = 167/337 (49%), Gaps = 38/337 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ E +++ + +P W +K +P QW+ I + P
Sbjct: 113 LLNAVLRRAQRES-EALLAELEHDPVVRTAHPRWLQKSLKAFWPE--QWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R + +Y +LL +G+ T + I L + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHHSRDAYLQLLTTAGINATPCVYSVDGIVLEAAADVRSLPGFAEGWISVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQLAA LLD+ G VLDAC APGGKTCH+LE+ +++VD RL + ENL
Sbjct: 230 EAAQLAADLLDLAPGQRVLDACCAPGGKTCHILEVEKDLAGVVAVDLEAKRLVRVRENLA 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A LI +D + ++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLSAELIAAD----------------GRDTATWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ +DI L+ ++L+ LW L GG LL+ TCS E+ E F
Sbjct: 334 DIKLTRKPDDIAALAALQGELLDALWPTLDVGGILLYATCSTLPTENTEVIEAFLARTSG 393
Query: 297 SIRLNSPGQLLPTVNKKQ-----------DYDGFFYS 322
+ L+ L T KQ +DGF+Y+
Sbjct: 394 ARELD----LATTAGIKQPHGRQLLAQEGGHDGFYYA 426
>gi|312958118|ref|ZP_07772641.1| rRNA SAM-dependent methyltransferase [Pseudomonas fluorescens WH6]
gi|311287549|gb|EFQ66107.1| rRNA SAM-dependent methyltransferase [Pseudomonas fluorescens WH6]
Length = 436
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 113/337 (33%), Positives = 167/337 (49%), Gaps = 38/337 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ E +++ + +P W +K +P QW+ I + P
Sbjct: 113 LLNAVLRRAQRES-EALLAELEHDPVVRTAHPRWLQKSLKAFWPE--QWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R +Y +LL +G+ T + I L + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHHGRDAYLQLLTAAGINATPCVYSTDGIVLEAAADVRSLPGFAEGWISVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQLAA LLD+ G VLDAC APGGKTCH+LE+ +++VD RL + ENL
Sbjct: 230 EAAQLAADLLDLAPGQRVLDACCAPGGKTCHILEVEKDLAGVVAVDLEAKRLVRVRENLA 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A LI +D + ++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLSAELIAAD----------------GRDTATWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ +DI L+ ++L+ LW L+ GG LL+ TCS E+ E F
Sbjct: 334 DIKLTRQPDDIAALAVLQGELLDALWPTLEVGGILLYATCSTLPTENTEVIEAFLARTSG 393
Query: 297 SIRLNSPGQLLPTVNKKQ-----------DYDGFFYS 322
+ L+ L T KQ +DGF+Y+
Sbjct: 394 ARELD----LATTAGIKQPHGRQLLVQEGGHDGFYYA 426
>gi|387891270|ref|YP_006321567.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
fluorescens A506]
gi|387160448|gb|AFJ55647.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
fluorescens A506]
Length = 436
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 112/333 (33%), Positives = 171/333 (51%), Gaps = 30/333 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ E +++ + +P W +K +P QW+ I + P
Sbjct: 113 LLNAVLRRAQRES-ETLLAELEHDPVVRTAHPRWLQKSLKAFWPE--QWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R + +Y +LL + + T + I L + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHHSRDAYLQLLADAAINATPCVYSTDGIVLEAAADVRSLPGFAQGWISVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQLAA LLD+ G VLDAC APGGKTCH+LE+ +++VD RL + ENL
Sbjct: 230 EAAQLAADLLDLAPGQRVLDACCAPGGKTCHILEVEKDLAGVVAVDLEAKRLVRVRENLA 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A LI +D + ++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLSADLIAAD----------------GRDTATWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEE--QAIIFSKNH 294
DI R+ +DI L+ ++L+ LW L+ GG LL+ TCS E+ E QA + +
Sbjct: 334 DIKLTRQPDDIAALAVLQGELLDALWPTLEVGGILLYATCSTLPTENTEVIQAFLARTSG 393
Query: 295 KDSIRL-NSPGQLLPT----VNKKQDYDGFFYS 322
+ L S G P + ++ +DGF+Y+
Sbjct: 394 ARELDLATSAGIKQPHGRQLLAQEGGHDGFYYA 426
>gi|395650512|ref|ZP_10438362.1| 16S rRNA methyltransferase B [Pseudomonas extremaustralis 14-3
substr. 14-3b]
Length = 436
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 112/336 (33%), Positives = 170/336 (50%), Gaps = 36/336 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ E +++ + +P W +K +P QW+ I + P
Sbjct: 113 LLNAVLRRAQRES-EALLAELEHDPVVRTAHPRWLQKSLKAFWPE--QWEGICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLET--TIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R +Y +LL +G+ + I L + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHHCRDAYLQLLTDAGIAAKPCVYSTDGIVLEAAADVRSLPGFAEGWISVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQLAA LLD+ G VLDAC APGGKTCH+LE+ +++VD RL + ENL
Sbjct: 230 EAAQLAADLLDLAPGQRVLDACCAPGGKTCHILEVQKDLAGVVAVDLEAKRLVRVRENLA 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A LI +D + ++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLSAELIAAD----------------GRDTATWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEE--QAIIFSKNH 294
DI R+ +DI L+ ++L+ LW L+ GG LL+ TCS E+ E QA + +
Sbjct: 334 DIKLTRQPDDIAALAVLQGELLDALWPTLEVGGILLYATCSTLPTENTEVIQAFLARTSG 393
Query: 295 KDSIRLNSPG--------QLLPTVNKKQDYDGFFYS 322
+ L + QLL ++ +DGF+Y+
Sbjct: 394 ARELDLATTAGIKQPHGRQLL---AQEGGHDGFYYA 426
>gi|398920312|ref|ZP_10659229.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM49]
gi|398168321|gb|EJM56342.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM49]
Length = 436
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 118/338 (34%), Positives = 171/338 (50%), Gaps = 40/338 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ IF +++ +P W +K +P QW+ I + P
Sbjct: 113 LLNAVLRNAQRESETIF-AELERDPVVRTAHPRWLQKSLKAFWPE--QWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R T +Y LL +G+ T + I L + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHHTRDAYLGLLTDAGIAATPCVFSRDGIVLDAAADVRSLPGFAEGWISVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKL---ISVDNNLSRLNMISENL 175
AAQLAA LLD+ G VLDAC APGGKTCH+LE A+ KL ++VD RL + ENL
Sbjct: 230 EAAQLAADLLDLAPGQRVLDACCAPGGKTCHILE-AEPKLAGVVAVDLEAKRLVRVRENL 288
Query: 176 KRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRN 235
+RL L A LI +D + T ++ K F RIL D PC+ +GV+RR+
Sbjct: 289 ERLKLSAELIAAD-------------GRDTQA---WWDGKPFQRILLDAPCSATGVIRRH 332
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI R+ +DI L+ ++L+ +W L+ GG LL+ TCS E+ E F
Sbjct: 333 PDIKLTRQPDDIAALALLQGELLDAMWNTLEVGGILLYATCSTLPTENTEVIEAFLARTP 392
Query: 296 DSIRLNSPGQLLPTVNKKQ-----------DYDGFFYS 322
+ L+ L T KQ +DGF+Y+
Sbjct: 393 GARELD----LATTAGIKQPHGRQLLAQEGGHDGFYYA 426
>gi|398862315|ref|ZP_10617925.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM79]
gi|398230962|gb|EJN16966.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM79]
Length = 436
Score = 181 bits (458), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 112/333 (33%), Positives = 168/333 (50%), Gaps = 30/333 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ E +++ + +P W +K +P QW+ I + P
Sbjct: 113 LLNAVLRRAQRES-EALLAELEHDPVVRTAHPRWLQKSLKAFWPE--QWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R T +Y LL ++G+ T I I L + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHHTRDAYLGLLTEAGIAATPCIYSQDGIILEAAADVRSLPGFAEGWISVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEI--ADIKLISVDNNLSRLNMISENLK 176
AAQLAA LLD+ G VLDAC APGGKTCH+LE A +++VD RL + ENL
Sbjct: 230 EAAQLAADLLDLAPGQRVLDACCAPGGKTCHILEAEPALAGVVAVDLEAKRLVRVRENLA 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A LI +D + ++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLSAELIAAD----------------GRDTATWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ +DI L+ ++L+ +W L+ GG LL+ TCS E+ E F
Sbjct: 334 DIKLTRQPDDIAALAVLQGELLDAMWITLEVGGILLYATCSTLPTENTEVIEAFLARTPG 393
Query: 297 SIRLNSPGQL-------LPTVNKKQDYDGFFYS 322
+ L+ Q + ++ +DGF+Y+
Sbjct: 394 ARELDLATQAGIKQPHGRQLLAQEGGHDGFYYA 426
>gi|398883312|ref|ZP_10638269.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM60]
gi|398196974|gb|EJM83964.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM60]
Length = 436
Score = 181 bits (458), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 114/337 (33%), Positives = 168/337 (49%), Gaps = 38/337 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ E +++ + +P W +K +P QW+ I + P
Sbjct: 113 LLNAVLRRAQRES-EALLAELEHDPVVRTAHPRWLQKSLKAFWPE--QWEAICTANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R T +Y LL ++G+ T + I L + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHHTRDAYLGLLTEAGIAATACVYSRDGIILDAAADVRSLPGFAEGWISVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEI--ADIKLISVDNNLSRLNMISENLK 176
AAQLAA LLD+ G VLDAC APGGKTCH+LE A +++VD RL + ENL
Sbjct: 230 EAAQLAADLLDLAPGQRVLDACCAPGGKTCHILEAEPALAGVVAVDLEAKRLVRVRENLA 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A LI +D + ++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLSAELIAAD----------------GRDTATWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ +DI L+ ++L+ +W L+ GG LL+ TCS E+ E F
Sbjct: 334 DIKLTRQPDDIAALAVLQGELLDAMWITLEVGGILLYATCSTLPTENTEVIEAFLARTPG 393
Query: 297 SIRLNSPGQLLPTVNKKQ-----------DYDGFFYS 322
+ L+ L T KQ +DGF+Y+
Sbjct: 394 ARELD----LATTAGIKQPHGRQLLAQEGGHDGFYYA 426
>gi|398878982|ref|ZP_10634086.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM67]
gi|398197891|gb|EJM84863.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM67]
Length = 436
Score = 181 bits (458), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 114/337 (33%), Positives = 168/337 (49%), Gaps = 38/337 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ E +++ + +P W +K +P QW+ I + P
Sbjct: 113 LLNAVLRRAQRES-EALLAELEHDPVVRTAHPRWLQKSLKAFWPE--QWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R T +Y LL ++G+ T + I L + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHHTRDAYLGLLTEAGIAATACVYSRDGIILDAAADVRSLPGFAEGWISVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEI--ADIKLISVDNNLSRLNMISENLK 176
AAQLAA LLD+ G VLDAC APGGKTCH+LE A +++VD RL + ENL
Sbjct: 230 EAAQLAADLLDLAPGQRVLDACCAPGGKTCHILEAEPALAGVVAVDLEAKRLVRVRENLA 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A LI +D + ++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLSAELIAAD----------------GRDTATWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ +DI L+ ++L+ +W L+ GG LL+ TCS E+ E F
Sbjct: 334 DIKLTRQPDDIAALAVLQGELLDAMWITLEVGGILLYATCSTLPTENTEVIEAFLARTPG 393
Query: 297 SIRLNSPGQLLPTVNKKQ-----------DYDGFFYS 322
+ L+ L T KQ +DGF+Y+
Sbjct: 394 ARELD----LATTAGIKQPHGRQLLAQEGGHDGFYYA 426
>gi|398900908|ref|ZP_10649895.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM50]
gi|398180737|gb|EJM68315.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM50]
Length = 436
Score = 180 bits (457), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 111/333 (33%), Positives = 168/333 (50%), Gaps = 30/333 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ E +++ + +P W +K +P QW+ I + P
Sbjct: 113 LLNAVLRRAQRES-EALLAELEHDPVVRTAHPRWLQKSLKAFWPE--QWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R T +Y LL ++G+ T + I L + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHHTRDAYLGLLTEAGIAATPCVYSQDGIILDAAADVRSLPGFAEGWISVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEI--ADIKLISVDNNLSRLNMISENLK 176
AAQLAA LLD+ G VLDAC APGGKTCH+LE A +++VD RL + ENL
Sbjct: 230 EAAQLAADLLDLAPGQRVLDACCAPGGKTCHILEAEPALAGVVAVDLEAKRLVRVRENLA 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A LI +D + ++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLSAELIAAD----------------GRDTATWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ +DI L+ ++L+ +W L+ GG LL+ TCS E+ E F
Sbjct: 334 DIKLTRQPDDIAALAVLQGELLDAMWITLEVGGILLYATCSTLPTENTEVIEAFLARTPG 393
Query: 297 SIRLNSPGQL-------LPTVNKKQDYDGFFYS 322
+ L+ Q + ++ +DGF+Y+
Sbjct: 394 ARELDIASQAGIKQPHGRQLLAQEGGHDGFYYA 426
>gi|160872609|ref|ZP_02062741.1| ribosomal RNA small subunit methyltransferase B [Rickettsiella
grylli]
gi|159121408|gb|EDP46746.1| ribosomal RNA small subunit methyltransferase B [Rickettsiella
grylli]
Length = 442
Score = 180 bits (457), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 126/340 (37%), Positives = 194/340 (57%), Gaps = 35/340 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR F R+K + K K+ I ++ +P W I +++ +PN W++ILD +
Sbjct: 115 LINGVLRSFQRQKTGLLK-KVSQI--THLAHPDWLIKKLQHAWPN--AWRSILDANNHLA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTI--IGPLAIKLHTPISISKIPKFFNGFCSIQD 118
++LR+NQ + T SY + L + + T+ + I L T + K+P F G SIQ+
Sbjct: 170 SMSLRVNQLEITRESYLQKLNNNNINATLSELSQSGIILDTSFPVDKLPGFRTGEISIQN 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
+AQL+A LL + G +VLDAC+APGGKT H+LE ++VD ++ RL + +NLK
Sbjct: 230 ISAQLSASLLLLEDGQHVLDACAAPGGKTTHILETQPELACCVAVDADVVRLTRLKDNLK 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L KI L + K + F+K + FDRIL D PC+G+GV+R++P
Sbjct: 290 RLKLTE-------KKIQLFPM------KVQDFKIFWKGRMFDRILLDSPCSGTGVIRKHP 336
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI LRR+ D+ +L+ ++L++LW +LKPGG LL+VTCS+ EE+ F +H D
Sbjct: 337 DIKLLRREKDVIQLADQQYQLLSSLWGLLKPGGILLYVTCSVLPEENANVLKRFLTHHFD 396
Query: 297 S----IR----LNSP--GQLLPTVNKKQDYDGFFYSLFQK 326
+ IR L P Q+LP ++ DGF+Y+ +K
Sbjct: 397 AREEVIRETWGLACPIGRQILPEIHGA---DGFYYARLRK 433
>gi|350553951|ref|ZP_08923101.1| sun protein [Thiorhodospira sibirica ATCC 700588]
gi|349789327|gb|EGZ43288.1| sun protein [Thiorhodospira sibirica ATCC 700588]
Length = 436
Score = 180 bits (456), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 117/339 (34%), Positives = 174/339 (51%), Gaps = 30/339 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN ILR +R++ + N + P W ++ +YP +L + P
Sbjct: 113 LINGILRRVVREQDALCAQLDQNPQVRH-AMPPWLYARLAASYPQHL--AALLTAINAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLA--IKLHTPISISKIPKFFNGFCSIQD 118
P+TLR+N + T Y + L+ +GL + +A + L TP+ + ++P F G S+QD
Sbjct: 170 PMTLRVNLARITRDEYLQRLQATGLAASAHPGVASAVSLQTPVDVQQLPGFAEGEVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAAQLAA LL + GM VLD C+APGGKT HLLE + + L ++D + RL I L
Sbjct: 230 AAAQLAAGLLACQPGMRVLDVCAAPGGKTAHLLESVNGALDLTALDIDPQRLARIEAYLT 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL +AT+ D ++ + F+RIL D+PC+ +GV+RR+P
Sbjct: 290 RLGYRATVRCGD----------------GQQPAPWWSGEVFERILLDVPCSATGVMRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLRR +DI+ L+ +L +W +L P G LL+ TCSL +E+E F H D
Sbjct: 334 DIKWLRRASDIEALATTQQNLLEAVWPLLAPNGVLLYATCSLLEQENEANLAAFVARHAD 393
Query: 297 SIRLNSP---GQLLP----TVNKKQDYDGFFYSLFQKRK 328
+ L G LP + Q DGF+Y+ QK +
Sbjct: 394 AQVLPITADWGIALPLGRQILTGDQGMDGFYYARLQKAR 432
>gi|398869697|ref|ZP_10625055.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM74]
gi|398210546|gb|EJM97190.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM74]
Length = 436
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 115/334 (34%), Positives = 173/334 (51%), Gaps = 32/334 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R IF +++ +P W +K +P QW+ I + P
Sbjct: 113 LLNAVLRNAQRDSETIF-AELERDPVVRTAHPRWLQKSLKAFWPE--QWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R + +Y LL ++G+ T + I L + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHHSRDAYLGLLTEAGIAATPCVYSRDGIVLDAAADVRSLPGFAEGWISVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKL---ISVDNNLSRLNMISENL 175
AAQLAA LLD+ G VLDAC APGGKTCH+LE A+ KL ++VD RL + ENL
Sbjct: 230 EAAQLAADLLDLAPGQRVLDACCAPGGKTCHILE-AEPKLAGVVAVDLEAKRLVRVRENL 288
Query: 176 KRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRN 235
+RL L A LI +D + T ++ K F RIL D PC+ +GV+RR+
Sbjct: 289 ERLKLSAELIAAD-------------GRDTQA---WWDGKPFQRILLDAPCSATGVIRRH 332
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI R+ +DI L+ ++L+ +W L+ GG LL+ TCS E+ E F
Sbjct: 333 PDIKLTRQPDDIAALAVLQGELLDAMWTTLEVGGILLYATCSTLPTENTEVIEAFLARTP 392
Query: 296 DSIRLN---SPGQLLPT----VNKKQDYDGFFYS 322
+ L+ + G P + ++ +DGF+Y+
Sbjct: 393 GARELDLATAAGIKQPHGRQLLAQEGGHDGFYYA 426
>gi|398841295|ref|ZP_10598518.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM102]
gi|398108803|gb|EJL98752.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM102]
Length = 436
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 112/333 (33%), Positives = 167/333 (50%), Gaps = 30/333 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ E +++ + +P W +K +P QW+ I + P
Sbjct: 113 LLNAVLRRAQRES-EALLAELEHDPVVRTAHPRWLQKSLKAFWPE--QWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R T +Y LL +G+ T I I L + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHHTRDAYLGLLTDAGIAATPCIYSQDGIILDAAADVRSLPGFAEGWISVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEI--ADIKLISVDNNLSRLNMISENLK 176
AAQLAA LLD+ G VLDAC APGGKTCH+LE A +++VD RL + ENL
Sbjct: 230 EAAQLAADLLDLAPGQRVLDACCAPGGKTCHILETEPALAGVVAVDLEAKRLVRVRENLA 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A LI +D + ++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLSAELIAAD----------------GRDTATWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ +DI L+ ++L+ +W L+ GG LL+ TCS E+ E F
Sbjct: 334 DIKLTRQPDDIAALAVLQGELLDAMWITLEVGGILLYATCSTLPTENTEVIEAFLARTPG 393
Query: 297 SIRLNSPGQL-------LPTVNKKQDYDGFFYS 322
+ L+ Q + ++ +DGF+Y+
Sbjct: 394 ARELDLATQAGIKQPHGRQLLAQEGGHDGFYYA 426
>gi|426406929|ref|YP_007027028.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas sp.
UW4]
gi|426265146|gb|AFY17223.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas sp.
UW4]
Length = 436
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 115/334 (34%), Positives = 173/334 (51%), Gaps = 32/334 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ IF +++ +P W +K +P QW+ I + P
Sbjct: 113 LLNAVLRNAQRESETIF-AELERDPVVRTAHPRWLQKSLKAFWPE--QWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R + +Y LL +G+ T + I L + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHHSRDAYLGLLTDAGIAATPCVYSRDGIVLEAAADVRSLPGFAEGWISVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKL---ISVDNNLSRLNMISENL 175
AAQLAA LLD+ G VLDAC APGGKTCH+LE A+ KL ++VD RL + ENL
Sbjct: 230 EAAQLAADLLDLAPGQRVLDACCAPGGKTCHILE-AEPKLAGVVAVDLEAKRLVRVRENL 288
Query: 176 KRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRN 235
+RL L A LI +D + T ++ K F RIL D PC+ +GV+RR+
Sbjct: 289 ERLKLSAELIAAD-------------GRDTQA---WWDGKPFQRILLDAPCSATGVIRRH 332
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI R+ +DI L+ ++L+ +W L+ GG LL+ TCS E+ E F
Sbjct: 333 PDIKLTRQPDDIAALALLQGELLDAMWNTLEVGGILLYATCSTLPTENTEVIEAFLARTP 392
Query: 296 DSIRLN---SPGQLLPT----VNKKQDYDGFFYS 322
+ L+ + G P + ++ +DGF+Y+
Sbjct: 393 GARELDLATAAGIKQPHGRQLLAQEGGHDGFYYA 426
>gi|333898250|ref|YP_004472123.1| sun protein [Pseudomonas fulva 12-X]
gi|333113515|gb|AEF20029.1| sun protein [Pseudomonas fulva 12-X]
Length = 438
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 114/338 (33%), Positives = 170/338 (50%), Gaps = 40/338 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYN--IHESYWNYPIWWINQVKITYPNFFQWKNILDVGHK 58
++NA+LR R + + + +H ++ P W Q+K +P W+ I +
Sbjct: 113 LLNAVLRNAQRGSDSLIQELDRDPVLHTAH---PRWLQKQLKSFWPE--HWQAICAANNA 167
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGL--ETTIIGPLAIKLHTPISISKIPKFFNGFCSI 116
PPL LR+N+R + Y L++ G E I+L ++ +P F G S+
Sbjct: 168 HPPLILRVNRRHGSRDDYLARLRQVGFDAEPCTFSRDGIRLLQACDVTLLPGFAEGHVSV 227
Query: 117 QDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEI--ADIKLISVDNNLSRLNMISEN 174
QD AAQLAA LL + G VLDAC+APGGKTCHLLE A ++++VD RL + EN
Sbjct: 228 QDEAAQLAADLLQLAPGQRVLDACAAPGGKTCHLLEAEPALSEVVAVDLEAKRLARVREN 287
Query: 175 LKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRR 234
L RL L+ATLI +D + ++ K F RIL D PC+ +GV+RR
Sbjct: 288 LDRLGLEATLIAAD----------------GRDTAAWWDGKPFQRILLDAPCSATGVIRR 331
Query: 235 NPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH 294
+PDI R+ +DI L+ ++L+ +W L+ GG LL+ TCS E+ E F
Sbjct: 332 HPDIKLTRKADDIPALATLQGELLDAMWPTLEVGGILLYATCSTLPTENTEVIEAFLART 391
Query: 295 KDSIRLNSPG----------QLLPTVNKKQDYDGFFYS 322
+ L+ G QLL ++ +DGF+Y+
Sbjct: 392 PGARELDIAGPFGLKQPHGRQLL---AQQDGHDGFYYA 426
>gi|423092860|ref|ZP_17080656.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
fluorescens Q2-87]
gi|397882733|gb|EJK99220.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
fluorescens Q2-87]
Length = 436
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 116/334 (34%), Positives = 170/334 (50%), Gaps = 32/334 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR R+ E +++ + +P W +K +P QW+ I + P
Sbjct: 113 LINAVLRRAQRES-EGLLAELEHDPVVRTAHPRWLQKALKAFWPE--QWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLET--TIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R T +Y LL ++G+ I L TP + +P F +G+ S+QD
Sbjct: 170 PMILRVNRRHHTRDAYLALLGEAGIPARPCEFSRDGILLETPGDVRALPGFVDGWISVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKL---ISVDNNLSRLNMISENL 175
AAQLAA LL++ G VLDAC APGGKTCH+LE A+ KL ++VD RL + ENL
Sbjct: 230 EAAQLAADLLELAPGQRVLDACCAPGGKTCHILE-AEPKLAGVVAVDLEAKRLVRVKENL 288
Query: 176 KRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRN 235
RL L A L +D + ++ K F RIL D PC+ +GV+RR+
Sbjct: 289 TRLGLDAELFAAD----------------GRDTATWWDGKPFQRILLDAPCSATGVIRRH 332
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI R+ +DI L+ ++L+ LW L GG LL+ TCS E+ E F
Sbjct: 333 PDIKLTRQPDDIAALAVLQGELLDALWPTLDVGGMLLYATCSTLPTENTEVIEAFLARTP 392
Query: 296 DSIRLNSPGQL-LPTVNKKQ------DYDGFFYS 322
+ L+ Q L + +Q +DGF+Y+
Sbjct: 393 GARELDIASQAGLKQPHGRQLLAQEGGHDGFYYA 426
>gi|170719272|ref|YP_001746960.1| sun protein [Pseudomonas putida W619]
gi|169757275|gb|ACA70591.1| sun protein [Pseudomonas putida W619]
Length = 436
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 113/336 (33%), Positives = 168/336 (50%), Gaps = 36/336 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ GE + M +P W +K +P QW+ I + P
Sbjct: 113 LLNAVLRRAQRE-GEALLAGMERDPVVRTAHPRWLQKALKAFWPE--QWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTI--IGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R + +Y LL ++G+ + I L + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHHSRDAYLALLTETGVGASACQFSRDGIVLTEACDVRSLPGFAEGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQL+A LL++ G VLDAC APGGKTCHLLE L+++D RL + ENL+
Sbjct: 230 EAAQLSADLLELAPGQRVLDACCAPGGKTCHLLEAEAGLGHLVAIDLEAKRLTRVRENLE 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A LI D + ++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLQLDAELIACD----------------ARDTASWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC-SLWFEESEEQAIIFSKN-- 293
DI R+ +DI L+ ++L+ LW L+ GG LL+ TC SL E +E ++
Sbjct: 334 DIKLTRQADDIPALAALQGELLDALWPTLEVGGMLLYATCSSLPTENTEVIGAFLARTPG 393
Query: 294 -------HKDSIRLNSPGQLLPTVNKKQDYDGFFYS 322
+ IR QLL ++ +DGF+Y+
Sbjct: 394 ARELDLATEAGIRQPHGRQLL---AQEGGHDGFYYA 426
>gi|404400584|ref|ZP_10992168.1| 16S rRNA methyltransferase B [Pseudomonas fuscovaginae UPB0736]
Length = 436
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 113/339 (33%), Positives = 169/339 (49%), Gaps = 42/339 (12%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ E+ +++ +P W +K +P QW+ I + P
Sbjct: 113 LLNAVLRRAQRESSELL-AELERDPVVRTAHPRWLQKSLKAFWPE--QWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL-----AIKLHTPISISKIPKFFNGFCS 115
P+ LR+N+R + +Y KLL + T P I L + +P F G+ S
Sbjct: 170 PMILRVNRRHHSRDAYLKLLADA---TVAAQPCDYSRDGIVLDAACDVRDLPGFAEGWIS 226
Query: 116 IQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISE 173
+QD AAQLAA LLD+ G VLDAC APGGKTCH+LE +++VD RL + E
Sbjct: 227 VQDEAAQLAADLLDLAPGQRVLDACCAPGGKTCHILEAQPQLAGVVAVDLEAKRLLRVRE 286
Query: 174 NLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVR 233
NL+RL L+A LI +D + ++ K F RIL D PC+ +GV+R
Sbjct: 287 NLERLGLEAELIAAD----------------GRDTATWWDGKPFQRILLDAPCSATGVIR 330
Query: 234 RNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKN 293
R+PDI R+ +DI L+ ++L+ +W L+ GG LL+ TCS E+ E F
Sbjct: 331 RHPDIKLTRQPDDIAALASLQGELLDAMWTTLEVGGILLYATCSTLPTENTEVIEAFLAR 390
Query: 294 HKDSIRLNSPG----------QLLPTVNKKQDYDGFFYS 322
+ L+ G QLL ++ +DGF+Y+
Sbjct: 391 TSGARELDIAGSFGVKQPHGRQLL---AQEGGHDGFYYA 426
>gi|398847282|ref|ZP_10604206.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM84]
gi|398251730|gb|EJN36963.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM84]
Length = 436
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 111/333 (33%), Positives = 165/333 (49%), Gaps = 30/333 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ GE + M +P W +K +P QW+ I + P
Sbjct: 113 LLNAVLRRAQRE-GEALLADMERDPVVRTAHPRWLQKSLKAFWPE--QWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTII--GPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R + +Y LL ++G+ + I L + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHHSRDAYLALLAEAGIGASACQYSRDGIVLTEACDVRGLPGFAEGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQL+A LL++ G VLDAC APGGKTCHLLE L+++D RL + ENL
Sbjct: 230 EAAQLSADLLELAPGQRVLDACCAPGGKTCHLLEAEAGLAHLVAIDLEAKRLTRVRENLD 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A LI D + ++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLQLDAELIACD----------------ARDTASWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ +DI L+ ++L+ LW L+ GG LL+ TCS E+ E F
Sbjct: 334 DIKLTRQADDIPALAALQGELLDALWPTLEVGGMLLYATCSSLPTENTEVIGAFLARTPG 393
Query: 297 SIRLN---SPGQLLPT----VNKKQDYDGFFYS 322
+ L+ G P + ++ +DGF+Y+
Sbjct: 394 ARELDLATEAGLRQPHGRQLLAQEGGHDGFYYA 426
>gi|407367487|ref|ZP_11114019.1| 16S rRNA methyltransferase B [Pseudomonas mandelii JR-1]
Length = 436
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 113/334 (33%), Positives = 171/334 (51%), Gaps = 32/334 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ E +++ + +P W +K +P QW+ I + P
Sbjct: 113 LLNAVLRRAQRES-EALLAELEHDPVVRTAHPRWLQKSLKAFWPE--QWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R +Y LL ++G+ T + I L + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHHARDAYLGLLTEAGIAATPCVYSQDGIILEAAADVRSLPGFAEGWISVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKL---ISVDNNLSRLNMISENL 175
AAQLAA LLD+ G VLDAC APGGKTCH+LE A+ KL ++VD RL + ENL
Sbjct: 230 EAAQLAADLLDLAPGQRVLDACCAPGGKTCHILE-AEPKLAGVVAVDLEAKRLVRVRENL 288
Query: 176 KRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRN 235
RL L A LI +D + ++ K F RIL D PC+ +GV+RR+
Sbjct: 289 ARLGLSAELIAAD----------------GRDTATWWDGKPFQRILLDAPCSATGVIRRH 332
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI R+ +DI L+ ++L+ +W L+ GG LL+ TCS E+ E F
Sbjct: 333 PDIKLTRQPDDIAALAVLQGELLDAMWITLEVGGILLYATCSTLPTENTEVIEAFLARTP 392
Query: 296 DSIRLN---SPGQLLPT----VNKKQDYDGFFYS 322
+ L+ + G P + ++ +DGF+Y+
Sbjct: 393 GARELDLATAAGIKQPHGRQLLAQEGGHDGFYYA 426
>gi|398947748|ref|ZP_10672384.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM33]
gi|398161660|gb|EJM49887.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM33]
Length = 436
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 115/334 (34%), Positives = 173/334 (51%), Gaps = 32/334 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ IF +++ +P W +K +P QW+ I + P
Sbjct: 113 LLNAVLRNAQRESETIF-AELERDPVVRTAHPRWLQKSLKAFWPE--QWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R + +Y LL +G+ T + I L + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHHSRDAYLGLLIDAGIAATPCVYSRDGIVLEAAADVRSLPGFAEGWISVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKL---ISVDNNLSRLNMISENL 175
AAQLAA LLD+ G VLDAC APGGKTCH+LE A+ KL ++VD RL + ENL
Sbjct: 230 EAAQLAADLLDLAPGQRVLDACCAPGGKTCHILE-AEPKLAGVVAVDLEAKRLVRVRENL 288
Query: 176 KRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRN 235
+RL L A LI +D + T ++ K F RIL D PC+ +GV+RR+
Sbjct: 289 ERLKLSAELIAAD-------------GRDTQA---WWDGKPFQRILLDAPCSATGVIRRH 332
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI R+ +DI L+ ++L+ +W L+ GG LL+ TCS E+ E F
Sbjct: 333 PDIKLTRQPDDIAALALLQGELLDAMWNTLEVGGILLYATCSTLPTENTEVIEAFLARTP 392
Query: 296 DSIRLN---SPGQLLPT----VNKKQDYDGFFYS 322
+ L+ + G P + ++ +DGF+Y+
Sbjct: 393 GARELDLATAAGIKQPHGRQLLAQEGGHDGFYYA 426
>gi|262089596|gb|ACY24694.1| Sun protein [uncultured organism]
Length = 301
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 107/304 (35%), Positives = 156/304 (51%), Gaps = 31/304 (10%)
Query: 31 YPIWWINQVKITYPNFFQWKNILDVGHKKPPLTLRINQRKTTLISYNKLLKKSGLETTII 90
+P W Q+K +P W+ I + PPL LR+N+R + Y L+ G +
Sbjct: 7 HPRWLQKQLKAFWPE--HWQAICAANNAHPPLILRVNRRHGSRDEYLNELRTVGFDAEAC 64
Query: 91 GPLA---IKLHTPISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKT 147
P + I+L ++ +P F G S+QD AAQLAA LL++ G VLDAC APGGKT
Sbjct: 65 -PFSRDGIRLLAACDVTTLPGFAEGRVSVQDEAAQLAADLLELAPGQRVLDACCAPGGKT 123
Query: 148 CHLLEI--ADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKT 205
CHLLE A +++VD RL + ENL+RL L+A LI +D ++
Sbjct: 124 CHLLEAEPALAGVVAVDLEQKRLVRVRENLQRLGLEAELIAADARAVDA----------- 172
Query: 206 NNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKML 265
++ + F RIL D PC+ +GV+RR+PDI R+ DI L++ ++L+ LW L
Sbjct: 173 -----WWDGQAFQRILLDAPCSATGVIRRHPDIKLTRQPEDITALAQLQGEMLDALWPTL 227
Query: 266 KPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQL-LPTVNKKQ------DYDG 318
GG LL+ TCS E+ E F + L+ G LP + +Q +DG
Sbjct: 228 AVGGILLYATCSTLPTENTEVIEAFLARTSGARELDIAGPFGLPQPHGRQLLAQENGHDG 287
Query: 319 FFYS 322
F+Y+
Sbjct: 288 FYYA 291
>gi|325272515|ref|ZP_08138891.1| 16S rRNA methyltransferase B [Pseudomonas sp. TJI-51]
gi|324102349|gb|EGB99819.1| 16S rRNA methyltransferase B [Pseudomonas sp. TJI-51]
Length = 358
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 111/334 (33%), Positives = 168/334 (50%), Gaps = 32/334 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ GE + M +P W +K +P QW+ I + P
Sbjct: 35 LLNAVLRRAQRE-GEALLAGMERDPVVRTAHPRWLQKALKAFWPE--QWEAICAANNAHP 91
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLA---IKLHTPISISKIPKFFNGFCSIQ 117
P+ LR+N+R + +Y LL +G+ + P + I L + +P F G+ S+Q
Sbjct: 92 PMILRVNRRHHSRDAYLGLLADAGVAASAC-PYSRDGIVLAEACDVRGLPGFAEGWVSVQ 150
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENL 175
D AAQL+A LL++ +G VLDAC APGGKTCHLLE L ++D RLN + ENL
Sbjct: 151 DEAAQLSADLLELAAGQRVLDACCAPGGKTCHLLEAEPGLAHLTAIDLEGKRLNRVRENL 210
Query: 176 KRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRN 235
RL L A LI D + ++ K F RIL D PC+ +GV+RR+
Sbjct: 211 DRLQLDAELIACD----------------ARDTASWWDGKPFQRILLDAPCSATGVIRRH 254
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEE--QAIIFSKN 293
PDI R+ +DI L+ ++L+ LW L+ GG LL+ TCS E+ + +A +
Sbjct: 255 PDIKLTRQADDIPALAALQGELLDALWPTLEVGGMLLYATCSSLPTENTQVIEAFLARTA 314
Query: 294 HKDSIRLNSPGQLLPT-----VNKKQDYDGFFYS 322
+ L + L + ++ +DGF+Y+
Sbjct: 315 GARELDLATEAGLRQPHGRQLLAQEGGHDGFYYA 348
>gi|104779336|ref|YP_605834.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
entomophila L48]
gi|95108323|emb|CAK13017.1| Ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) (16S rRNA m5C967
methyltransferase) [Pseudomonas entomophila L48]
Length = 436
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 110/333 (33%), Positives = 166/333 (49%), Gaps = 30/333 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ E+ S M +P W +K +P QW+ I + P
Sbjct: 113 LLNAVLRRAQREGEELLAS-MERDPVVRTAHPRWLQKSLKAFWPE--QWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTII--GPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R + +Y LL ++G++ + I L + +P F +G+ S+QD
Sbjct: 170 PMILRVNRRHHSRDAYLSLLAEAGIQASACQFSRDGIVLAEACDVRGLPGFADGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQL+A LL++ G VLDAC APGGKTCHLLE ++++D RL + ENL
Sbjct: 230 EAAQLSADLLELAPGQRVLDACCAPGGKTCHLLEAEPGLAHMVAIDLEAKRLARVRENLD 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A LI D + ++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLKLDAELIACD----------------ARDTASWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ DI L+ ++L+ LW L+ GG LL+ TCS E+ E F
Sbjct: 334 DIKLTRQAEDIPALATLQGELLDALWPTLEVGGMLLYATCSSLPTENTEVIDAFLARTPG 393
Query: 297 SIRLN---SPGQLLPT----VNKKQDYDGFFYS 322
+ L+ G P + ++ +DGF+Y+
Sbjct: 394 ARELDLATEAGLRQPHGRQLLAQEGGHDGFYYA 426
>gi|374704485|ref|ZP_09711355.1| 16S rRNA methyltransferase B [Pseudomonas sp. S9]
Length = 437
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 109/336 (32%), Positives = 168/336 (50%), Gaps = 36/336 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ E ++M +P W +K +P W+ I + P
Sbjct: 113 LLNAVLRRAQRE-AEPLLAEMERDPMVRTAHPRWLQKSLKAFWPE--HWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLE--TTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
PL LR+N+R + +Y + L+ +G+E P I+L ++ +P F G S+QD
Sbjct: 170 PLILRVNRRHGSRDAYLQELQAAGIECMACAFSPDGIRLAQACDVTTLPGFAEGRVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQLAA LL++ G VLDAC APGGKTCH+LE+ ++++D RL + ENL
Sbjct: 230 EAAQLAADLLELAPGQRVLDACCAPGGKTCHILEVEPGLAGVVAIDLEPKRLVRVRENLA 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A LI +D + +N ++ F R L D PC+ +GV+RR+P
Sbjct: 290 RLKLDAELIAAD-------------GRAVDN---WWDGHSFQRTLLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ DI L++ ++L+ LW L GG +L+ TCS E+ + F
Sbjct: 334 DIKIARQAEDIPALAQLQGELLDALWPTLAVGGIMLYATCSTLPTENSQVIEAFLARTPG 393
Query: 297 SIRLNSPG----------QLLPTVNKKQDYDGFFYS 322
+ L+ G QLL ++ +DGF+Y+
Sbjct: 394 ARELDIAGPFGLHQPHGRQLL---AQEDGHDGFYYA 426
>gi|429333785|ref|ZP_19214476.1| 16S rRNA methyltransferase B [Pseudomonas putida CSV86]
gi|428761589|gb|EKX83812.1| 16S rRNA methyltransferase B [Pseudomonas putida CSV86]
Length = 436
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 114/336 (33%), Positives = 167/336 (49%), Gaps = 36/336 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ IF +++ +P W +K +P QW+ I + P
Sbjct: 113 LLNAVLRRAQREGQAIF-AELERDPVVRTAHPRWLQKSLKAFWPE--QWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTI--IGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ +Y LL+ +G+E I L + +P F G+ S+QD
Sbjct: 170 PMILRVNRLHHQRDAYLGLLRDAGIEAAPCRFSRDGIVLAEACDVRNLPGFNQGWISVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQLAA LL++ G VLDAC APGGKTCHLLE + ++++D RL + ENL
Sbjct: 230 EAAQLAADLLELAPGQRVLDACCAPGGKTCHLLEAEEKLAGVVAIDLEAKRLTRVRENLD 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A LI D + T N ++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLDAQLIACDA-------------RDTAN---WWDGKGFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ +DI L+ ++L+ LW L+ GG LL+ TCS E+ E F
Sbjct: 334 DIKLTRQADDIAALASLQGELLDALWPTLEVGGMLLYATCSTLPTENTEVIAAFLDRTPG 393
Query: 297 S----------IRLNSPGQLLPTVNKKQDYDGFFYS 322
+ IR QLL ++ +DGF+Y+
Sbjct: 394 ARELDLATDAGIRQPHGRQLL---AQEGGHDGFYYA 426
>gi|26986811|ref|NP_742236.1| sun protein [Pseudomonas putida KT2440]
gi|46396870|sp|Q88RR3.1|RSMB_PSEPK RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|24981407|gb|AAN65700.1|AE016196_11 sun protein [Pseudomonas putida KT2440]
Length = 436
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 110/333 (33%), Positives = 165/333 (49%), Gaps = 30/333 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ GE + M +P W +K +P QW+ I + P
Sbjct: 113 LLNAVLRRAQRE-GEELLAGMERDPVVRTAHPRWLQKALKAFWPE--QWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTII--GPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R + +Y LL ++G+ + I L + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHHSRDAYLALLAEAGIGASACQYSRDGIVLAEACDVRGLPGFAEGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQL+A LL++ G VLDAC APGGKTCHLLE ++++D RL + ENL
Sbjct: 230 EAAQLSADLLELAPGQRVLDACCAPGGKTCHLLEAEAGLANMVAIDLEAKRLTRVRENLD 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A LI D + ++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLQLDAELIACD----------------ARDTASWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ +DI L+ ++L+ LW L+ GG LL+ TCS E+ E F
Sbjct: 334 DIKMTRQADDIPALATLQGELLDALWPTLEVGGMLLYATCSTLPTENTEVIKAFLARTPG 393
Query: 297 SIRLN---SPGQLLPT----VNKKQDYDGFFYS 322
+ L+ G P + ++ +DGF+Y+
Sbjct: 394 ARELDLATEAGLRQPHGRQLLAQEGGHDGFYYA 426
>gi|398868368|ref|ZP_10623767.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM78]
gi|398233338|gb|EJN19272.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM78]
Length = 436
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 113/334 (33%), Positives = 172/334 (51%), Gaps = 32/334 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ E ++ + +P W +K +P QW+ I + P
Sbjct: 113 LLNAVLRRAQRES-ETLLVELEHDPVVRTAHPRWLQKSLKAFWPE--QWEAICTANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R + +Y LL ++G+ + + I L + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHHSREAYLGLLGEAGIAASACVYSRDGIILEAAADVRSLPGFAEGWISVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKL---ISVDNNLSRLNMISENL 175
AAQLAA LLD+ G VLDAC APGGKTCH+LE A+ KL ++VD RL + ENL
Sbjct: 230 EAAQLAADLLDLAPGQRVLDACCAPGGKTCHILE-AEPKLAGVVAVDLEAKRLVRVRENL 288
Query: 176 KRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRN 235
+RL L A LI +D + ++ K F RIL D PC+ +GV+RR+
Sbjct: 289 ERLKLSAELIAAD----------------GRDTATWWDGKPFQRILLDAPCSATGVIRRH 332
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI R+ +DI L+ ++L+ LW L+ GG LL+ TCS E+ E F
Sbjct: 333 PDIKLTRQADDIAALALLQGELLDALWMTLEVGGILLYATCSTLPTENTEVIEAFLARTP 392
Query: 296 DSIRLN---SPGQLLPT----VNKKQDYDGFFYS 322
+ L+ + G P + ++ +DGF+Y+
Sbjct: 393 GARELDLATAAGIKQPHGRQLLAQEGGHDGFYYA 426
>gi|407693959|ref|YP_006818747.1| ribosomal RNA small subunit methyltransferase B [Alcanivorax
dieselolei B5]
gi|407251297|gb|AFT68404.1| Ribosomal RNA small subunit methyltransferase B [Alcanivorax
dieselolei B5]
Length = 434
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 108/342 (31%), Positives = 173/342 (50%), Gaps = 45/342 (13%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESY--WNYPIWWINQVKITYPNFFQWKNILDVGHK 58
+ NA+LR K I + + + W+ P W Q + +P+ Q + +
Sbjct: 119 LANAVLR----KASRIDAATAFADYPDAVRWSLPDWLWQQWQSDWPD--QAAAMAEASLT 172
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLET--TIIGPLAIKLHTPISISKIPKFFNGFCSI 116
PPLTLR+NQR + L + G E + P A+ L P ++ +P F G ++
Sbjct: 173 PPPLTLRVNQRHH---HRDHWLTQFGDEARAGALSPWALYLSPPRPVTALPGFAEGELTV 229
Query: 117 QDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENL 175
QD AAQL L+ + G VLDAC+APGGKT L E +L+++D + SRL + E L
Sbjct: 230 QDEAAQLPVTLMAMPDGARVLDACAAPGGKTGQLAEAFPGARLVALDVSESRLRQVREAL 289
Query: 176 KRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRN 235
KRL+ +AT++ D + ++ + FD IL D PC+ +G++RR
Sbjct: 290 KRLDAEATVLQGDAADPQ----------------SWWDGEPFDAILLDAPCSATGILRRQ 333
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PD+ W RR+ D+ L ++L+ LW +L+PGG L++ TCS+ E+++Q F + +
Sbjct: 334 PDVKWHRRRQDLPALVDLQARMLDALWPLLRPGGTLVYATCSVLRAENDQQISAFLERTE 393
Query: 296 DSIRLNSPG-----------QLLPTVNKKQDYDGFFYSLFQK 326
D+ ++PG QLLP + Q DGF+ + +K
Sbjct: 394 DATE-DTPGIGAASPAARGWQLLP---RDQGPDGFYLARLRK 431
>gi|399003945|ref|ZP_10706590.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM18]
gi|398121235|gb|EJM10872.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM18]
Length = 436
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 116/338 (34%), Positives = 167/338 (49%), Gaps = 40/338 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ E +++ +P W +K +P QW+ I + P
Sbjct: 113 LLNAVLRRAQRES-EALLAELERDPVVRTAHPRWLQKSLKAFWPE--QWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLET--TIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R T +Y LL +G+ I I L + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHHTRDAYLGLLSDAGVAAKPCIYSRDGIILDAAADVRSLPGFAEGWISVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKL---ISVDNNLSRLNMISENL 175
AAQLAA LLD+ G VLDAC APGGKTCH+LE A+ KL ++VD RL + ENL
Sbjct: 230 EAAQLAADLLDLAPGQRVLDACCAPGGKTCHILE-AEPKLAGVVAVDLEAKRLVRVRENL 288
Query: 176 KRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRN 235
RL L A LI +D + ++ K F RIL D PC+ +GV+RR+
Sbjct: 289 ARLGLSAELIAAD----------------ARDTATWWDGKPFQRILLDAPCSATGVIRRH 332
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI R+ +DI L+ ++L+ +W L+ GG LL+ TCS E+ E F
Sbjct: 333 PDIKLTRQPDDIAALAVLQGELLDAMWITLEVGGILLYATCSTLPTENTEVIEAFLARTP 392
Query: 296 DSIRLNSPGQLLPTVNKKQ-----------DYDGFFYS 322
+ L+ L T KQ +DGF+Y+
Sbjct: 393 GARELD----LATTAGIKQPHGRQLLAQEGGHDGFYYA 426
>gi|192360951|ref|YP_001984033.1| ribosomal RNA small subunit methyltransferase B [Cellvibrio
japonicus Ueda107]
gi|190687116|gb|ACE84794.1| ribosomal RNA small subunit methyltransferase B [Cellvibrio
japonicus Ueda107]
Length = 432
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 106/336 (31%), Positives = 173/336 (51%), Gaps = 29/336 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++N +LR+F R + + K+ + N+P W ++ ++P Q ++L ++ P
Sbjct: 114 LVNGVLRQFQRDQ-QTLGEKLASDRAFSSNHPDWLEGMLRKSWPQ--QTDSLLAANNEHP 170
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLET--TIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P TLR+N R + Y L+ + T P I L +P F G S+QD
Sbjct: 171 PFTLRLNTRHMSRDDYLAQLRALDIAAGATPFSPYGITLVQACDPRSLPGFAQGLISVQD 230
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKR 177
AAQL+ LL + G+ VLDAC APGGKT HLLEI +K+ ++D RL + +NL R
Sbjct: 231 EAAQLSGDLLQLAPGLRVLDACCAPGGKTGHLLEIEPRMKVTAMDVEERRLQRVRDNLGR 290
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L + A + D ++ ++ + +DRIL D PC+ +G++RR+PD
Sbjct: 291 LGVTADIRCGDGTRPEA----------------WWDGEPYDRILLDAPCSATGIIRRHPD 334
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEE--QAIIFSKNHK 295
I LR +I +L++ ++L++LW +LKPGG LL+ TCS+ E+ +A I +
Sbjct: 335 IKVLRTPEEIARLAQLQGQLLDSLWPLLKPGGILLYATCSVMPRENTRVVEAFIQRQPEA 394
Query: 296 DSIRLNSPGQLLPTVNKK-----QDYDGFFYSLFQK 326
L+ P LL ++ + +DGF+Y+ +K
Sbjct: 395 RCDTLDVPWGLLQPCGRQLLPQPEGHDGFYYARLRK 430
>gi|398997462|ref|ZP_10700287.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM21]
gi|398124104|gb|EJM13627.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM21]
Length = 436
Score = 177 bits (449), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 110/333 (33%), Positives = 167/333 (50%), Gaps = 30/333 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ E +++ + +P W +K +P QW+ I + P
Sbjct: 113 LLNAVLRRAQRES-EALLAELEHDPVVRTAHPRWLQKSLKAFWPE--QWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R +Y LL ++G+ T + I L + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHHARDAYLGLLTEAGIAATPCVYSQDGIILEAAADVRSLPGFAEGWISVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQLAA LLD+ G VLDAC APGGKTCH+LE +++VD RL + ENL
Sbjct: 230 EAAQLAADLLDLAPGQRVLDACCAPGGKTCHILEAEPQLAGVVAVDLEAKRLVRVRENLA 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A LI +D + ++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLSAELIAAD----------------GRDTATWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ +DI L+ ++L+ +W L GG LL+ TCS E+ E F
Sbjct: 334 DIKLTRQPDDIAALAVLQGELLDAMWITLDVGGILLYATCSTLPTENTEVIEAFLARTPG 393
Query: 297 SIRLN---SPGQLLPT----VNKKQDYDGFFYS 322
+ L+ + G P + ++ +DGF+Y+
Sbjct: 394 ARELDLATAAGIKQPHGRQLLAQEGGHDGFYYA 426
>gi|418021016|ref|ZP_12660187.1| ribosomal RNA small subunit methyltransferase [Candidatus Regiella
insecticola R5.15]
gi|347603634|gb|EGY28428.1| ribosomal RNA small subunit methyltransferase [Candidatus Regiella
insecticola R5.15]
Length = 389
Score = 177 bits (449), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 160/269 (59%), Gaps = 23/269 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++N +LR+F RK+ + + + S+ +P W + ++K YP QW+ I+ + KP
Sbjct: 117 LVNGVLRQFQRKQIMLLEQATND--NSHHLHPNWLLERIKKAYPE--QWQQIVVANNTKP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTI--IGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + Y LL+++G+E T + AI+L P + ++P F G+ ++QD
Sbjct: 173 PMWLRVNRIHHSRSQYLALLQQAGIEATSHPVYADAIRLTLPCPVGQLPGFSQGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LLD ++G Y+LD C+APGGKT ++LE+A ++++VD + RL + ENL+R
Sbjct: 233 ASAQGCIDLLDPKNGEYILDLCAAPGGKTTYILEVAPKAEVLAVDIDKQRLRCVKENLQR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L+A + + D ++ + + FDRIL D PC+ +GV+RR+PD
Sbjct: 293 LQLQARIKIGDGRTPDI----------------WCGEQLFDRILLDAPCSATGVIRRHPD 336
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLK 266
I WLRR +DI +L+K +I++ +W LK
Sbjct: 337 IKWLRRDSDIAELTKLQAEIMDAIWPKLK 365
>gi|389808844|ref|ZP_10204980.1| ribosomal RNA small subunit methyltransferase RsmB [Rhodanobacter
thiooxydans LCS2]
gi|388442427|gb|EIL98623.1| ribosomal RNA small subunit methyltransferase RsmB [Rhodanobacter
thiooxydans LCS2]
Length = 433
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 113/342 (33%), Positives = 183/342 (53%), Gaps = 38/342 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR + R++ E +K+ ++ +P W ++ +P Q + ++ + +P
Sbjct: 116 LVNAVLRRWQRER-ESRLAKLDARPQTRHAHPAWLATALQRDWPQ--QAEAVMTADNNEP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPIS--ISKIPKFFNGFCSIQD 118
PL LR+N+R++ + L+ +G T LA L P S ++++P F +G ++QD
Sbjct: 173 PLMLRVNRRRSEREALIARLQAAGYAATAHPWLADALVLPHSSDVTRLPGFDDGLFAVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRL 178
AAQ+AA L D+ G+ VLDAC+APGGK CHLLE ADI L +++ + +R I +NL RL
Sbjct: 233 GAAQVAADLADLHDGLRVLDACAAPGGKACHLLERADIALTALEFDPARAERIRQNLMRL 292
Query: 179 NLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDI 238
L A ++ D ++ + FDRIL D PC+ SGV+RR PD+
Sbjct: 293 RLDAKIVTGDAGAPK----------------GWWDGRPFDRILLDAPCSASGVLRRRPDV 336
Query: 239 PWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD-- 296
RR++DI + ++L LW +L PGG+LL+VTCS+ E+E AI+
Sbjct: 337 RLHRRESDIAAMQAQQRRLLAALWPLLAPGGRLLYVTCSVLRAENE--AIVGELLAAQAD 394
Query: 297 ------SIRLNSPG----QLLPTVNKKQDYDGFFYSLFQKRK 328
++ + P Q+LP D DG +Y++ QK +
Sbjct: 395 AQAVPFTLPVGQPAAVGWQILPG---DGDLDGMYYAVLQKSR 433
>gi|398944792|ref|ZP_10671461.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM41(2012)]
gi|398157775|gb|EJM46148.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM41(2012)]
Length = 436
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 110/333 (33%), Positives = 167/333 (50%), Gaps = 30/333 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ E +++ + +P W +K +P QW+ I + P
Sbjct: 113 LLNAVLRRAQRES-EALLAELEHDPVVRTAHPRWLQKSLKAFWPE--QWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R + +Y LL +G+ T + I L + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHHSRDAYLGLLTDAGIAATPCVYSQDGIILDAASDVRSLPGFAEGWISVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEI--ADIKLISVDNNLSRLNMISENLK 176
AAQLAA LLD+ G VLDAC APGGKTCH+LE A +++VD RL + ENL
Sbjct: 230 EAAQLAADLLDLAPGQRVLDACCAPGGKTCHILEAEPALAGVVAVDLEAKRLVRVRENLA 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A LI +D + ++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLGLSAELIAAD----------------GRDTATWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ +DI L+ ++L+ +W L+ GG LL+ TCS E+ E F
Sbjct: 334 DIKLTRQPDDIAALAVLQGELLDAMWITLEVGGILLYATCSTLPTENTEVIEAFLARTPG 393
Query: 297 SIRLNSPGQL-------LPTVNKKQDYDGFFYS 322
+ L+ Q + ++ +DGF+Y+
Sbjct: 394 ARELDLATQAGIKQPHGRQLLAQEGGHDGFYYA 426
>gi|148545339|ref|YP_001265441.1| sun protein [Pseudomonas putida F1]
gi|395446389|ref|YP_006386642.1| sun protein [Pseudomonas putida ND6]
gi|397693661|ref|YP_006531541.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas putida
DOT-T1E]
gi|421523119|ref|ZP_15969750.1| 16S rRNA methyltransferase B [Pseudomonas putida LS46]
gi|148509397|gb|ABQ76257.1| 16S rRNA m(5)C-967 methyltransferase [Pseudomonas putida F1]
gi|388560386|gb|AFK69527.1| sun protein [Pseudomonas putida ND6]
gi|397330391|gb|AFO46750.1| Ribosomal RNA small subunit methyltransferase B [Pseudomonas putida
DOT-T1E]
gi|402752940|gb|EJX13443.1| 16S rRNA methyltransferase B [Pseudomonas putida LS46]
Length = 436
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 110/333 (33%), Positives = 165/333 (49%), Gaps = 30/333 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ GE + M +P W +K +P QW+ I + P
Sbjct: 113 LLNAVLRRAQRE-GEELLAGMERDPVVRTAHPRWLQKALKAFWPE--QWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTII--GPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R + +Y LL ++G+ + I L + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHHSRDAYLALLAEAGIGASACQYSRDGIVLAEACDVRGLPGFAEGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQL+A LL++ G VLDAC APGGKTCHLLE ++++D RL + ENL
Sbjct: 230 EAAQLSADLLELAPGQRVLDACCAPGGKTCHLLEAEAGLAHMVAIDLEAKRLTRVRENLD 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A LI D + ++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLQLDAELIACD----------------ARDTASWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ +DI L+ ++L+ LW L+ GG LL+ TCS E+ E F
Sbjct: 334 DIKLTRQADDIPALATLQGELLDALWPTLEVGGMLLYATCSSLPTENTEVIKAFLARTPG 393
Query: 297 SIRLN---SPGQLLPT----VNKKQDYDGFFYS 322
+ L+ G P + ++ +DGF+Y+
Sbjct: 394 ARELDLATEAGLRQPHGRQLLAQEGGHDGFYYA 426
>gi|339484970|ref|YP_004699498.1| sun protein [Pseudomonas putida S16]
gi|431800090|ref|YP_007226993.1| 16S rRNA methyltransferase B [Pseudomonas putida HB3267]
gi|338835813|gb|AEJ10618.1| sun protein [Pseudomonas putida S16]
gi|430790855|gb|AGA71050.1| 16S rRNA methyltransferase B [Pseudomonas putida HB3267]
Length = 436
Score = 177 bits (448), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 110/333 (33%), Positives = 165/333 (49%), Gaps = 30/333 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR R+ GE + M +P W +K +P QW+ I + P
Sbjct: 113 LLNAVLRRAQRE-GEELLAGMERDPVVRTAHPRWLQKSLKAFWPE--QWEAICAANNAHP 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTII--GPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R + +Y LL ++G+ + I L + +P F G+ S+QD
Sbjct: 170 PMILRVNRRHHSRDAYLALLAEAGVGASACQYSRDGIVLAEACDVRGLPGFAEGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176
AAQL+A LL++ G VLDAC APGGKTCHLLE ++++D RL + ENL
Sbjct: 230 EAAQLSADLLELAPGQRVLDACCAPGGKTCHLLEAEAGLAHVVAIDLEAKRLTRVRENLD 289
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL L A LI D + ++ K F RIL D PC+ +GV+RR+P
Sbjct: 290 RLQLDAELIACD----------------ARDTASWWDGKPFQRILLDAPCSATGVIRRHP 333
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI R+ +DI L+ ++L+ LW L+ GG LL+ TCS E+ E F
Sbjct: 334 DIKLTRQADDIPALATLQGELLDALWPTLEVGGMLLYATCSSLPTENTEVIDAFLARTPG 393
Query: 297 SIRLN---SPGQLLPT----VNKKQDYDGFFYS 322
+ L+ G P + ++ +DGF+Y+
Sbjct: 394 ARELDLATEAGLRQPHGRQLLAQEGGHDGFYYA 426
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.322 0.139 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,235,833,614
Number of Sequences: 23463169
Number of extensions: 217341585
Number of successful extensions: 546064
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5972
Number of HSP's successfully gapped in prelim test: 1862
Number of HSP's that attempted gapping in prelim test: 525099
Number of HSP's gapped (non-prelim): 8944
length of query: 329
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 187
effective length of database: 9,027,425,369
effective search space: 1688128544003
effective search space used: 1688128544003
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 77 (34.3 bits)