BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15212
(329 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SQF|A Chain A, The Crystal Structure Of E. Coli Fmu Binary Complex With
S- Adenosylmethionine At 2.1 A Resolution
pdb|1SQG|A Chain A, The Crystal Structure Of The E. Coli Fmu Apoenzyme At 1.65
A Resolution
Length = 429
Score = 199 bits (505), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 109/333 (32%), Positives = 191/333 (57%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIXX 118
P+ LRIN+ + S+ LL ++G++ P A++L TP + +P F +G+ ++
Sbjct: 173 PMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 XXXXXXXXXXXIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>pdb|2YXL|A Chain A, Crystal Structure Of Ph0851
Length = 450
Score = 105 bits (262), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 86/324 (26%), Positives = 147/324 (45%), Gaps = 38/324 (11%)
Query: 23 NIHESYWNY--PIWWINQVK----ITYPNFFQWKNILDVGHKKPPLTLRINQRKTTLISY 76
+ E W Y P W I +VK +FF+ V + +++R+N K +
Sbjct: 147 ELEELEWKYLAPSWLIERVKGILGDETEDFFR-----SVNKRHEWISIRVNTLKANVEEV 201
Query: 77 NKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIXXXXXXXXXXXXXIRSGM 134
L++ G+E P +K+ P + F G + + G
Sbjct: 202 IGELEEDGVEVVRSERVPTILKIKGPYNFDTSSAFNEGKIIVQEEASAVASIVLDPKPGE 261
Query: 135 YVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKI 192
V+D +APGGKT HL E+ K+ + D + R+ + + +KR+ +K
Sbjct: 262 TVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKI---------- 311
Query: 193 NLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSK 252
+K L D K + D++L D PCT SG + +NP++ W R++ I ++S+
Sbjct: 312 -VKPLVKDARKAPE----IIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQ 366
Query: 253 YSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD--SIRLNS---PGQLL 307
++L + +++KPGG+LL+ TCS++ EE+E+ F H + + L S PG L
Sbjct: 367 LQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFLNVHPEFKLVPLKSPYDPGFLE 426
Query: 308 PTVNK---KQDYDGFFYSLFQKRK 328
T+ + GFFY+L +K K
Sbjct: 427 GTMRAWPHRHSTIGFFYALLEKSK 450
>pdb|1IXK|A Chain A, Crystal Structure Analysis Of Methyltransferase Homolog
Protein From Pyrococcus Horikoshii
Length = 315
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 112/239 (46%), Gaps = 24/239 (10%)
Query: 52 ILDVGHKKPPLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIK----LHTPISISKIP 107
I + K P R+N K ++ K L K G + + P A + P SI+ P
Sbjct: 35 IAEAXEKPLPRCFRVNTLKISVQDLVKRLNKKGFQFKRV-PWAKEGFCLTREPFSITSTP 93
Query: 108 KFFNGFCSIXXXXXXXXXXXXXIRSGMYVLDACSAPGGKTCHLLEIA--DIKLISVDNNL 165
+F G I + G V D +APGGKT +L ++ D + + D +
Sbjct: 94 EFLTGLIYIQEASSXYPPVALDPKPGEIVADXAAAPGGKTSYLAQLXRNDGVIYAFDVDE 153
Query: 166 SRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLP 225
+RL NL RL + +IL S +++ +L ++ FD+IL D P
Sbjct: 154 NRLRETRLNLSRLGV-LNVILFHSSSLHIGELNVE----------------FDKILLDAP 196
Query: 226 CTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESE 284
CTGSG + +NP+ W R +DIK ++L ++LKPGG L++ TCSL EE+E
Sbjct: 197 CTGSGTIHKNPERKWNRTXDDIKFCQGLQXRLLEKGLEVLKPGGILVYSTCSLEPEENE 255
>pdb|2FRX|A Chain A, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
pdb|2FRX|B Chain B, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
pdb|2FRX|C Chain C, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
pdb|2FRX|D Chain D, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
Length = 479
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 91/194 (46%), Gaps = 22/194 (11%)
Query: 136 VLDACSAPGGKTCHLLEIA--DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193
V D +APG KT + + +++ + + SR+ ++ N+ R + N
Sbjct: 121 VXDVAAAPGSKTTQISARXNNEGAILANEFSASRVKVLHANISRCGIS-----------N 169
Query: 194 LKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDI--PWLRRKNDIKKLS 251
+ + D F + FD IL D PC+G GVVR++PD W N ++++
Sbjct: 170 VALTHFD-----GRVFGAAVPEXFDAILLDAPCSGEGVVRKDPDALKNWSPESN--QEIA 222
Query: 252 KYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVN 311
+++++ + L+PGG L++ TC+L EE+E + + + D++ G L P N
Sbjct: 223 ATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFPGAN 282
Query: 312 KKQDYDGFFYSLFQ 325
K +GF + Q
Sbjct: 283 KALTEEGFLHVFPQ 296
>pdb|3A4T|A Chain A, Crystal Structure Of Atrm4 From M.Jannaschii With
Sinefungin
pdb|3A4T|B Chain B, Crystal Structure Of Atrm4 From M.Jannaschii With
Sinefungin
pdb|3AJD|A Chain A, Crystal Structure Of Atrm4
Length = 274
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 110/228 (48%), Gaps = 25/228 (10%)
Query: 64 LRINQRKTTLISYNKLLKKSG--LETTIIGPLAIKLHTPISISKIPKFFNGFCSIXXXXX 121
+R+N K K L+ G LE T + +P SI P++ G+
Sbjct: 13 IRVNTLKINPEVLKKRLENKGVVLEKTFLDYAFEVKKSPFSIGSTPEYLFGYYMPQSISS 72
Query: 122 XXXXXXXXIRSGMYVLDACSAPGGKTCHLLEIADIK--LISVDNNLSRLNMISENLKRLN 179
R ++LD C+APGGKT HL ++ K +++V+ + +R + N+ R+
Sbjct: 73 MIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMG 132
Query: 180 LKATLIL-SDISKINLKKLYIDINKKTNNRFRFYKNK-YFDRILADLPCTGSGVVRRNPD 237
+ T+I+ +D+ K Y D KN+ +FD+IL D PC+G+ + +N +
Sbjct: 133 VLNTIIINADMRK------YKD---------YLLKNEIFFDKILLDAPCSGNIIKDKNRN 177
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEE 285
+ + DIK S ++++ +LK G+L++ TCS+ EE+EE
Sbjct: 178 V----SEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEE 221
>pdb|3M6W|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P21212 In Complex
With S-Adenosyl-L- Methionine
Length = 464
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 83/192 (43%), Gaps = 19/192 (9%)
Query: 107 PKFFNGFCSIXXXXXXXXXXXXXIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLS 166
P F+ G I + G VLD +APGGKT HL K + + N +
Sbjct: 76 PFFYAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVD 135
Query: 167 --RLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADL 224
R+ + EN++R A L ++ L + + YF R+L D
Sbjct: 136 GKRVRGLLENVERWG--APLAVTQAPPRALAEAF---------------GTYFHRVLLDA 178
Query: 225 PCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESE 284
PC+G G+ R++ + + K++++ +L ++L PGG L++ TC+ EE+E
Sbjct: 179 PCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENE 238
Query: 285 EQAIIFSKNHKD 296
F K H +
Sbjct: 239 GVVAHFLKAHPE 250
>pdb|3M6U|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group 43
pdb|3M6U|B Chain B, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group 43
pdb|3M6V|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P2 In Complex With
S-Adenosyl-L- Methionine
pdb|3M6V|B Chain B, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P2 In Complex With
S-Adenosyl-L- Methionine
Length = 464
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 83/192 (43%), Gaps = 19/192 (9%)
Query: 107 PKFFNGFCSIXXXXXXXXXXXXXIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLS 166
P F+ G I + G VLD +APGGKT HL K + + N +
Sbjct: 76 PFFYAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVD 135
Query: 167 --RLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADL 224
R+ + EN++R A L ++ L + + YF R+L D
Sbjct: 136 GKRVRGLLENVERWG--APLAVTQAPPRALAEAF---------------GTYFHRVLLDA 178
Query: 225 PCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESE 284
PC+G G+ R++ + + K++++ +L ++L PGG L++ TC+ EE+E
Sbjct: 179 PCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENE 238
Query: 285 EQAIIFSKNHKD 296
F K H +
Sbjct: 239 GVVAHFLKAHPE 250
>pdb|3M6X|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P21212
Length = 464
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 81/192 (42%), Gaps = 19/192 (9%)
Query: 107 PKFFNGFCSIXXXXXXXXXXXXXIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLS 166
P F+ G I + G VLD +APGGKT HL K + + N +
Sbjct: 76 PFFYAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARXGGKGLLLANEVD 135
Query: 167 --RLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADL 224
R+ + EN++R A L ++ L + + YF R+L D
Sbjct: 136 GKRVRGLLENVERWG--APLAVTQAPPRALAEAF---------------GTYFHRVLLDA 178
Query: 225 PCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESE 284
PC+G G R++ + + K+ ++ +L ++L PGG L++ TC+ EE+E
Sbjct: 179 PCSGEGXFRKDREAARHWGPSAPKRXAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENE 238
Query: 285 EQAIIFSKNHKD 296
F K H +
Sbjct: 239 GVVAHFLKAHPE 250
>pdb|3M4X|A Chain A, Structure Of A Ribosomal Methyltransferase
Length = 456
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 78/157 (49%), Gaps = 18/157 (11%)
Query: 131 RSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNL--SRLNMISENLKRLNLKATLILSD 188
+ G VLD C+APGGK+ L K + V N + R ++SEN++R + + I+++
Sbjct: 104 KPGEKVLDLCAAPGGKSTQLAAQXKGKGLLVTNEIFPKRAKILSENIERWGV-SNAIVTN 162
Query: 189 ISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIK 248
+ L + + +FDRI+ D PC+G G R++P+ +
Sbjct: 163 HAPAELVPHF---------------SGFFDRIVVDAPCSGEGXFRKDPNAIKEWTEESPL 207
Query: 249 KLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEE 285
K +IL++ K LK G+L++ TC+ EE+EE
Sbjct: 208 YCQKRQQEILSSAIKXLKNKGQLIYSTCTFAPEENEE 244
>pdb|2B9E|A Chain A, Human Nsun5 Protein
Length = 309
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 77/158 (48%), Gaps = 21/158 (13%)
Query: 133 GMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLIL-SDISK 191
G +V+DAC+APG KT HL + N ++ + KRL ATL+ + +S
Sbjct: 103 GSHVIDACAAPGNKTSHLAALL--------KNQGKIFAFDLDAKRLASMATLLARAGVSC 154
Query: 192 INLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIK--K 249
L + D + + R+++ Y IL D C+GSG+ R + P + ++
Sbjct: 155 CELAE--EDFLAVSPSDPRYHEVHY---ILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHA 209
Query: 250 LSKYSCKILNNL--WKMLKPGGKLLFVTCSLWFEESEE 285
L+ + + L + + L+ +L++ TCSL EE+E+
Sbjct: 210 LAGFQQRALCHALTFPSLQ---RLVYSTCSLCQEENED 244
>pdb|4FZV|A Chain A, Crystal Structure Of The Human Mterf4:nsun4:sam Ternary
Complex
Length = 359
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 69/152 (45%), Gaps = 13/152 (8%)
Query: 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLN-LKATLILSD 188
++ G VLD C+APGGKT LL+ + NL+ ++ + RL + + + +
Sbjct: 146 LQPGDIVLDLCAAPGGKTLALLQTGCCR------NLAANDLSPSRIARLQKILHSYVPEE 199
Query: 189 ISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGS--GVVRRNPDIPWLRRKND 246
I N + + ++ + +DR+L D+PCT + +I RK +
Sbjct: 200 IRDGN----QVRVTSWDGRKWGELEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKE 255
Query: 247 IKKLSKYSCKILNNLWKMLKPGGKLLFVTCSL 278
+ L ++L KPGG +++ TCSL
Sbjct: 256 RQILPVLQVQLLAAGLLATKPGGHVVYSTCSL 287
>pdb|4FP9|A Chain A, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|C Chain C, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|D Chain D, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|F Chain F, Human Mterf4-Nsun4 Protein Complex
Length = 360
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 69/152 (45%), Gaps = 13/152 (8%)
Query: 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLN-LKATLILSD 188
++ G VLD C+APGGKT LL+ + NL+ ++ + RL + + + +
Sbjct: 147 LQPGDIVLDLCAAPGGKTLALLQTGCCR------NLAANDLSPSRIARLQKILHSYVPEE 200
Query: 189 ISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGS--GVVRRNPDIPWLRRKND 246
I N + + ++ + +DR+L D+PCT + +I RK +
Sbjct: 201 IRDGN----QVRVTSWDGRKWGELEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKE 256
Query: 247 IKKLSKYSCKILNNLWKMLKPGGKLLFVTCSL 278
+ L ++L KPGG +++ TCSL
Sbjct: 257 RQILPVLQVQLLAAGLLATKPGGHVVYSTCSL 288
>pdb|2CWW|A Chain A, Crystal Structure Of Thermus Thermophilus Ttha1280, A
Putative Sam- Dependent Rna Methyltransferase, In
Complex With S-Adenosyl-L- Homocysteine
pdb|2CWW|B Chain B, Crystal Structure Of Thermus Thermophilus Ttha1280, A
Putative Sam- Dependent Rna Methyltransferase, In
Complex With S-Adenosyl-L- Homocysteine
Length = 382
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 68/168 (40%), Gaps = 28/168 (16%)
Query: 133 GMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKI 192
G LD S GG HL + ++++VD++ L EN + L +L +
Sbjct: 210 GERALDVFSYAGGFALHL-ALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFD 268
Query: 193 NLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSK 252
L++L +K RF D ++ D P G K D+++ +
Sbjct: 269 LLRRL-----EKEGERF--------DLVVLDPPAFAKG-------------KKDVERAYR 302
Query: 253 YSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
++ K+LK GG L +CS E A++ ++ +D+ RL
Sbjct: 303 AYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMV-AEAAQDAHRL 349
>pdb|1WXW|A Chain A, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXW|B Chain B, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXW|C Chain C, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXW|D Chain D, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXX|A Chain A, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXX|B Chain B, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXX|C Chain C, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXX|D Chain D, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
Length = 382
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 57/145 (39%), Gaps = 27/145 (18%)
Query: 133 GMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKI 192
G LD S GG HL + ++++VD++ L EN + L +L +
Sbjct: 210 GERALDVFSYAGGFALHL-ALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFD 268
Query: 193 NLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSK 252
L++L +K RF D ++ D P G K D+++ +
Sbjct: 269 LLRRL-----EKEGERF--------DLVVLDPPAFAKG-------------KKDVERAYR 302
Query: 253 YSCKILNNLWKMLKPGGKLLFVTCS 277
++ K+LK GG L +CS
Sbjct: 303 AYKEVNLRAIKLLKEGGILATASCS 327
>pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium
Pennivorans, A Keratinolytic Enzyme Related To
Subtilisin
Length = 671
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 60/145 (41%), Gaps = 21/145 (14%)
Query: 152 EIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDI-------SKINLKKLYIDINKK 204
E + K++ N+ S ++ I +K +N K L L I + + +K+ Y I
Sbjct: 28 EYTEGKILVGYNDRSEVDKI---VKAVNGKVVLELPQIKVVSIKLNGMTVKQAYDKIKAL 84
Query: 205 TNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKM 264
R+ + Y ++ P VV+ NPD+ +R+ Y ++ N LW +
Sbjct: 85 ALKGIRYVEPSYKRELIK--PT----VVKPNPDMYKIRKPGLNSTARDYGEELSNELWGL 138
Query: 265 LKPGGKLLFVTCSLWFEESEEQAII 289
+ + VT LW E S I+
Sbjct: 139 -----EAIGVTQQLWEEASGTNIIV 158
>pdb|3RE4|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Rio1 Kinase
Bound To Toyocamycin.
pdb|3RE4|B Chain B, Crystal Structure Of Archaeoglobus Fulgidus Rio1 Kinase
Bound To Toyocamycin
Length = 258
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 27/102 (26%)
Query: 168 LNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCT 227
N + EN+KRL +A L+ +D+S+ N+ +YID K + D
Sbjct: 176 FNDVVENVKRLYQEAELVHADLSEYNI--MYID------------KVYFID--------M 213
Query: 228 GSGVVRRNPDIP-WLRR--KNDIKKLSKYSCKILNNLWKMLK 266
G V R+P +L R +N I+ SKY K + +MLK
Sbjct: 214 GQAVTLRHPMAESYLERDVRNIIRFFSKYGVK--ADFEEMLK 253
>pdb|2FHP|A Chain A, Crystal Structure Of Putative Methylase From Enterococcus
Faecalis
pdb|2FHP|B Chain B, Crystal Structure Of Putative Methylase From Enterococcus
Faecalis
Length = 187
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 14/94 (14%)
Query: 133 GMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKI 192
G LD S GG + K I ++ N + L +I EN+ I + K
Sbjct: 45 GGXALDLYSGSGGLAIEAVSRGXDKSICIEKNFAALKVIKENIA--------ITKEPEKF 96
Query: 193 NLKKLYIDINKKTNNRFRFYKNK-YFDRILADLP 225
++K D N+ +FY+ K FD +L D P
Sbjct: 97 EVRKX--DANRALE---QFYEEKLQFDLVLLDPP 125
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,612,341
Number of Sequences: 62578
Number of extensions: 381356
Number of successful extensions: 940
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 901
Number of HSP's gapped (non-prelim): 21
length of query: 329
length of database: 14,973,337
effective HSP length: 99
effective length of query: 230
effective length of database: 8,778,115
effective search space: 2018966450
effective search space used: 2018966450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)