BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15212
(329 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P44788|RSMB_HAEIN Ribosomal RNA small subunit methyltransferase B OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=rsmB PE=3 SV=1
Length = 451
Score = 233 bits (593), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 133/340 (39%), Positives = 201/340 (59%), Gaps = 35/340 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
++NA+LR FLR++ EI I + W +P W++N++K YPN W+ I++ ++
Sbjct: 132 LVNAVLRRFLREQDEILA-----IIDKNWQTLHPEWFVNKLKKAYPN---WREIIEANNQ 183
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLET-TIIGPLAIKLHTPISISKIPKFFNGFCSIQ 117
KPP+ LR+N +K L +Y LL++ G+ + T P A+ L PI++ K+P F G ++Q
Sbjct: 184 KPPMWLRVNSQKNALETYRTLLEEQGVSSKTSHHPNALCLDIPIAVQKLPHFEEGAVTVQ 243
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
D +AQ AA LL+ ++ ++LDAC+APGGKT H+LE+A +I++D RL + ENL+
Sbjct: 244 DLSAQWAATLLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLE 303
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RLN +A ++ D SK + + +I K FDRIL D PC+ +GV+RR+P
Sbjct: 304 RLNQQAIVVCGDASKPD--EWLAEIGKSAAK---------FDRILLDAPCSATGVIRRHP 352
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR++ DI +L + KIL+ LW+ LKP G LL+ TCS+ EE+ EQ F H D
Sbjct: 353 DIKWLRKETDIAQLVELQKKILSALWEKLKPNGVLLYATCSVLPEENCEQIQAFLNAHAD 412
Query: 297 SIRLNSP---------GQLLPTVNKKQDYDGFFYSLFQKR 327
+ L+ P Q +P N DGF+Y+ KR
Sbjct: 413 AELLSLPFSDDKSAVGFQFIPQPNSG---DGFYYAKLLKR 449
>sp|Q87KD3|RSMB_VIBPA Ribosomal RNA small subunit methyltransferase B OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=rsmB PE=3 SV=1
Length = 427
Score = 225 bits (574), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 122/336 (36%), Positives = 196/336 (58%), Gaps = 30/336 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R + E+ + + N + + +P W + ++ YP QW++I+D ++K
Sbjct: 113 LINAVLRNYQRNQEELDQMAVSN-NAGKYGHPSWLLKLLQDAYPQ--QWESIVDANNQKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + T Y LLK +++T AIKL P + K+P F G+ S+QD
Sbjct: 170 PMWLRVNHQHHTRDEYLALLKNENIDSTPHTEAMDAIKLAAPCDVMKLPGFDKGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQL+ L + G +LD C+APGGKT H+LE + +++++D + +RL + ENLKR
Sbjct: 230 AAAQLSINYLKPQDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKR 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
LNL+A ++ D N +++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 290 LNLQAKVVCGD----------------ARNPQEWWQGEQFDRILLDAPCSATGVIRRHPD 333
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI L++ +I + +W LKPGG +++ TCS+ +E+ EQ F D+
Sbjct: 334 IKWLRRADDIAALAELQSEIFDAMWTQLKPGGTMVYATCSITPQENVEQVKAFLARTADA 393
Query: 298 IRLNS----PG-QLLPTVNKKQDYDGFFYSLFQKRK 328
L+S PG Q+LP ++D DGF+Y++ K +
Sbjct: 394 QLLDSDPDQPGRQILPG---EEDMDGFYYAVLTKTR 426
>sp|A1JRZ3|RSMB_YERE8 Ribosomal RNA small subunit methyltransferase B OS=Yersinia
enterocolitica serotype O:8 / biotype 1B (strain 8081)
GN=rsmB PE=3 SV=1
Length = 429
Score = 223 bits (569), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 121/336 (36%), Positives = 202/336 (60%), Gaps = 32/336 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + N +S++ +P W + ++K+ YP+ QW+ ILD ++KP
Sbjct: 117 LINGVLRQFQRQQVELLERAANN--DSHYLHPSWLLARIKLAYPD--QWQQILDANNQKP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + I Y +LLK++ +E P A++L TP ++S +P F G+ ++QD
Sbjct: 173 PMWLRVNRLHHSRIEYLELLKQANIEALPHDFYPDAVRLITPCAVSDLPGFELGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LLD + G +LD C+APGGKT H+LE A + +++VD + RL+ + ENL+R
Sbjct: 233 ASAQGCVDLLDPQDGEQILDLCAAPGGKTTHILEAAPKVHVLAVDIDEQRLSRVKENLQR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L A + + D +T + + ++ FDRIL D PC+ +GV+RR+PD
Sbjct: 293 LRLHADVRVGD--------------GRTPDEW--CGDQQFDRILLDAPCSATGVIRRHPD 336
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI +L++ +I+ +W LK GG +++ TCS+ EE+++Q F + H ++
Sbjct: 337 IKWLRRDSDIAELAQLQSEIIEAIWPKLKKGGVMVYATCSILPEENQQQIATFLQRHSEA 396
Query: 298 IRLNSPG------QLLPTVNKKQDYDGFFYSLFQKR 327
+ + Q LP +D DGF+Y+ KR
Sbjct: 397 DLVETGTVSALGRQNLP---HPEDGDGFYYAKLIKR 429
>sp|Q9KVU5|RSMB_VIBCH Ribosomal RNA small subunit methyltransferase B OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=rsmB PE=3 SV=1
Length = 434
Score = 220 bits (560), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 118/335 (35%), Positives = 194/335 (57%), Gaps = 30/335 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R + E ++ + + +P W + +K +YP QW+ I++ + K
Sbjct: 121 LINAVLRNYQRDQ-EGLDAQATSHDAGRYGHPGWLLKLLKESYPE--QWQQIVEANNSKA 177
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + T Y LL+++G+ TT A+ L TP + ++P F G+ S+QD
Sbjct: 178 PMWLRVNHQHHTRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQD 237
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQLA L ++G +LD C+APGGKT H+LE + +++++D + +RL + ENL+R
Sbjct: 238 AAAQLALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQR 297
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L A +I D ++++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 298 LELTAQVICGDARYPQ----------------QWWQGEQFDRILLDAPCSATGVIRRHPD 341
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI L++ +IL+ +W+ LKPGG L++ TCS+ +E+ Q F + D+
Sbjct: 342 IKWLRRADDIAALAELQREILDAMWQQLKPGGSLVYATCSITPQENRLQVKAFLERTPDA 401
Query: 298 IRLNS----PG-QLLPTVNKKQDYDGFFYSLFQKR 327
+ S PG Q+LP ++ DGF+Y++ K+
Sbjct: 402 RLVGSDPAQPGRQILPG---EEAMDGFYYAVLSKQ 433
>sp|B5XNC2|RSMB_KLEP3 Ribosomal RNA small subunit methyltransferase B OS=Klebsiella
pneumoniae (strain 342) GN=rsmB PE=3 SV=1
Length = 431
Score = 218 bits (556), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 121/338 (35%), Positives = 197/338 (58%), Gaps = 34/338 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + HE+ + +P W + +++ +P QW+ I+D +++P
Sbjct: 117 LINGVLRQFQRQQEALLVE--FAEHENRYLHPKWLLKRLQQAWPQ--QWQEIVDANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLE--TTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + + LLK++GLE T P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRNHHSRDEWLALLKEAGLEGFTHPDYPDAVRLATPAPVHALPGFAEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L +G +LD C+APGGKT H+LE+A ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMRYLLPENGERILDLCAAPGGKTTHILEVAPQAQVMAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KA + K+ + RF ++ N+ FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKAEV------------------KQGDGRFPEQWCGNEQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +ILN+ W+ LKPGG L++ TCS+ EE+ +Q F
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILNSTWEHLKPGGTLVYATCSILPEENSQQISAFLARTP 394
Query: 296 DSI-----RLNSPGQLLPTVNKKQDYDGFFYSLFQKRK 328
D+ SPGQ + ++ DGFFY+ KR+
Sbjct: 395 DAELHATGTPASPGQQ--NLPGPEEGDGFFYAKLIKRR 430
>sp|A6TEU2|RSMB_KLEP7 Ribosomal RNA small subunit methyltransferase B OS=Klebsiella
pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH
78578) GN=rsmB PE=3 SV=1
Length = 431
Score = 218 bits (556), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 122/339 (35%), Positives = 197/339 (58%), Gaps = 36/339 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + HE+ + +P W + +++ +P QW+ I++ +++P
Sbjct: 117 LINGVLRQFQRQQEALLAE--FAEHENRYLHPKWLLKRLQQAWPE--QWQEIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLE--TTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + + LL ++GLE T P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRNHHSRDEWLALLNEAGLEGFTHPDYPDAVRLATPAPVHALPGFAEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L +G +LD C+APGGKT H+LE+A ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMRYLQPENGERILDLCAAPGGKTTHILEVAPQAQVMAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KA + K+ + RF ++ N+ FDRIL D PC+ +GV+RR+
Sbjct: 293 LGVKAEV------------------KQGDGRFPEQWCGNEQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +ILN +W LKPGG L++ TCS+ EE+ +Q F
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILNAIWGHLKPGGTLVYATCSILPEENSQQIAAFLARTP 394
Query: 296 DSI-----RLNSPGQL-LPTVNKKQDYDGFFYSLFQKRK 328
D+ SPGQ LP V ++ DGFFY+ KR+
Sbjct: 395 DAELHATGTPASPGQQNLPGV---EEGDGFFYAKLIKRR 430
>sp|A8GKG7|RSMB_SERP5 Ribosomal RNA small subunit methyltransferase B OS=Serratia
proteamaculans (strain 568) GN=rsmB PE=3 SV=1
Length = 429
Score = 217 bits (552), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 114/330 (34%), Positives = 190/330 (57%), Gaps = 30/330 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + N +S + +P W + +++ YP QW+ I+D ++KP
Sbjct: 117 LINGVLRQFQRQQEELLQRAANN--DSRYLHPSWLLKRIQQAYP--AQWEQIIDANNQKP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T Y +L++++G+ A++L P +++ +P F +G+ ++QD
Sbjct: 173 PMWLRVNRLHHTREDYLQLMEQAGIAAEPHAEYRDAVRLLAPCAVTDLPGFADGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LLD + G +LD C+APGGKT H+LE A +++VD + RL + ENL+R
Sbjct: 233 ASAQGCVDLLDPQDGEQILDLCAAPGGKTTHILEAAPKAHVMAVDIDEQRLKRVKENLQR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L L A + K+ + R ++ +K FDRIL D PC+ +GV+RR+
Sbjct: 293 LRLHAEV------------------KQGDGRTPQQWCGDKQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR +DI +L+ +I+ +W LK GG +++ TCS+ E+ EQ F + H
Sbjct: 335 PDIKWLRRDSDIAELAALQAEIIEAIWPHLKSGGVMVYATCSILPAENAEQVSAFLQRHA 394
Query: 296 DSIRLNSPGQLLP---TVNKKQDYDGFFYS 322
D+ + + Q P + +D DGFFY+
Sbjct: 395 DARLVETGNQQQPGRQNLPHPEDGDGFFYA 424
>sp|A7MPE7|RSMB_CROS8 Ribosomal RNA small subunit methyltransferase B OS=Cronobacter
sakazakii (strain ATCC BAA-894) GN=rsmB PE=3 SV=1
Length = 429
Score = 216 bits (551), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 117/333 (35%), Positives = 193/333 (57%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ ++ ++ W +P+W +N+ + +P +W+ +++ +++P
Sbjct: 117 LINGVLRQFQRQQDELLAE--FSGQDARWLHPMWLLNRFQTAWPR--EWQAVVEANNERP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N++ + + KLL+++G+ I P A++L P +S +P F G+ ++QD
Sbjct: 173 PMWLRVNRQHHSRDEWLKLLEENGMTGHIHPRYPDAVRLDAPAPVSALPGFEQGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LL ++G +LD C+APGGKT H+LE A +++VD + R++ + ENLKR
Sbjct: 233 ASAQGCVELLAPQNGETILDLCAAPGGKTTHILEAAPQASVMAVDVDAQRISRVYENLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KA + + D RF + FDRIL D PC+ +GV+RR+
Sbjct: 293 LKMKADVKVGD------------------GRFPSTWCGETQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR +DI +L++ +IL+ +W LKPGG LL+ TCS+ EE+ EQ F
Sbjct: 335 PDIKWLRRDSDINELAQLQSEILDAIWPHLKPGGTLLYATCSVLPEENSEQIRAFLSRTP 394
Query: 296 DSI-----RLNSPG-QLLPTVNKKQDYDGFFYS 322
D+ +PG Q LP + DGFFY+
Sbjct: 395 DAQLDGTGSTQTPGIQNLPGATEG---DGFFYA 424
>sp|Q9CKP7|RSMB_PASMU Ribosomal RNA small subunit methyltransferase B OS=Pasteurella
multocida (strain Pm70) GN=rsmB PE=3 SV=1
Length = 446
Score = 216 bits (549), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 126/341 (36%), Positives = 194/341 (56%), Gaps = 39/341 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
++N +LR FLR++ E K+ + +W+ +P W +N++K YPN W+ I++ +
Sbjct: 127 LVNGVLRRFLREQ-ETLLVKV----DKHWHTLHPDWLVNRLKEAYPN---WREIVEANNH 178
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLETT-IIGPLAIKLHTPISISKIPKFFNGFCSIQ 117
KPP+ LR+NQ+K + +Y LL + G+E P A++L P+++S++P F G S+Q
Sbjct: 179 KPPMWLRVNQQKNSTETYRTLLAEQGIEAEKADNPCALRLLQPVAVSQLPAFHEGAVSVQ 238
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
D AQ +A LL +G +LDAC+APGGKT H+LE A ++++D +RL + ENL
Sbjct: 239 DVNAQWSALLLAPENGELILDACAAPGGKTTHILEQAPQAHVVALDVEATRLKRVHENLA 298
Query: 177 RLNLKATLILSDISKIN--LKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRR 234
R+ +AT+I D ++ LK+L + FDRIL D PC+ +GV+RR
Sbjct: 299 RMQQQATVICGDATQPAQWLKQLSESAVQ-------------FDRILLDAPCSATGVIRR 345
Query: 235 NPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH 294
+PDI WLR+ +DI L +IL LW +LKP G LL+ TCS+ EE+ Q F N+
Sbjct: 346 HPDIKWLRQASDISALVALQKQILQALWTVLKPNGILLYATCSVLPEENALQIEQFLTNN 405
Query: 295 KD---------SIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 326
D ++ + Q LPT N DGF+Y+ +K
Sbjct: 406 VDAKLEPLPFTAVEGSVGYQFLPTENGG---DGFYYAKLRK 443
>sp|A9R925|RSMB_YERPG Ribosomal RNA small subunit methyltransferase B OS=Yersinia pestis
bv. Antiqua (strain Angola) GN=rsmB PE=3 SV=2
Length = 429
Score = 214 bits (546), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 118/331 (35%), Positives = 197/331 (59%), Gaps = 32/331 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + + N +S++ +P W + ++K YP QW+ ILD +++P
Sbjct: 117 LINGVLRQFQRQQVELLERAVNN--DSHYLHPSWLLARIKQAYPA--QWQQILDANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGL--ETTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N++ + Y +LL ++ + E I A++L TP +++ +P F G+ ++QD
Sbjct: 173 PMWLRVNRQHHSRSEYLELLTQADINAEPHPIYRDAVRLITPCAVNHLPGFELGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LLD ++G +LD C+APGGKT H+LE A +++VD + RL+ + ENL+R
Sbjct: 233 ASAQGCVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLSRVKENLQR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L+A + + D + + ++ FDRIL D PC+ +GV+RR+PD
Sbjct: 293 LQLQAVVRVGDGRAPDT----------------WCGDQQFDRILLDAPCSATGVIRRHPD 336
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR DI +L++ +I+ +W LK GG L++ TCS+ EE+++Q F + H ++
Sbjct: 337 IKWLRRDRDISELAQLQSEIIEAIWPKLKHGGVLVYATCSILPEENQQQIAAFLQRHPEA 396
Query: 298 I-----RLNSPG-QLLPTVNKKQDYDGFFYS 322
+PG Q LP +D DGFFY+
Sbjct: 397 QLTETGTTAAPGKQNLP---HPEDGDGFFYA 424
>sp|B2VK95|RSMB_ERWT9 Ribosomal RNA small subunit methyltransferase B OS=Erwinia
tasmaniensis (strain DSM 17950 / Et1/99) GN=rsmB PE=3
SV=1
Length = 429
Score = 214 bits (544), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 117/332 (35%), Positives = 188/332 (56%), Gaps = 34/332 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + N + + +P W + ++K +P QWK I+D +++P
Sbjct: 117 LINGVLRQFQRQQDELMQQ--MNDGDQQYLHPKWLLERLKRAWPA--QWKQIVDANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL---AIKLHTPISISKIPKFFNGFCSIQ 117
P+ LR+N++ + ++ LL++SG + P A++L +P ++ ++P F G+ ++Q
Sbjct: 173 PMWLRVNRQHHSRDAWLTLLEESG-KQAFAHPQHGDALRLESPCAVGQLPGFDQGWITVQ 231
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
D +AQ LL R G +LD C+APGGKT H+LE A K+++VD + RL +SENL+
Sbjct: 232 DVSAQGCVALLAPRDGEQILDLCAAPGGKTTHILEAAPQAKVMAVDVDAQRLARVSENLQ 291
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RL ++A + D + + FDRIL D PC+ +GV+RR+P
Sbjct: 292 RLTMQAEVKQGD----------------GRTPAAWCGDTQFDRILLDAPCSATGVIRRHP 335
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLRR DI +L+ +IL+ +W LKPGG LL+ TCS+ EE+ Q F + H D
Sbjct: 336 DIKWLRRDRDIAELAALQQQILDAVWPHLKPGGTLLYATCSVLPEENHVQIGQFLQRHAD 395
Query: 297 SI-----RLNSPG-QLLPTVNKKQDYDGFFYS 322
+ L PG Q+ P + DGF+Y+
Sbjct: 396 ATLIETGDLTQPGIQVFPQADGG---DGFYYA 424
>sp|C0PZV1|RSMB_SALPC Ribosomal RNA small subunit methyltransferase B OS=Salmonella
paratyphi C (strain RKS4594) GN=rsmB PE=3 SV=1
Length = 429
Score = 213 bits (543), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 113/332 (34%), Positives = 194/332 (58%), Gaps = 34/332 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + ++ + +P W + +++ YP QW+ I+D +++P
Sbjct: 117 LINGVLRQFQRQQETLLNE--FATSDARFLHPGWLVKRLQNAYPT--QWQRIIDANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T + LL+ +G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ A L ++G ++LD C+APGGKT H+LE+A + +++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVLAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LKPGG L++ TCS+ EE+ +Q F +
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKTFLQRTP 394
Query: 296 DSI-----RLNSPGQLLPTVNKKQDYDGFFYS 322
D+ + PGQ + ++ DGFFY+
Sbjct: 395 DAALSETGTPDQPGQQ--NLPGGEEGDGFFYA 424
>sp|Q57J62|RSMB_SALCH Ribosomal RNA small subunit methyltransferase B OS=Salmonella
choleraesuis (strain SC-B67) GN=rsmB PE=3 SV=1
Length = 429
Score = 213 bits (543), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 113/332 (34%), Positives = 194/332 (58%), Gaps = 34/332 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + ++ + +P W + +++ YP QW+ I+D +++P
Sbjct: 117 LINGVLRQFQRQQETLLNE--FATSDARFLHPGWLVKRLQNAYPT--QWQRIIDANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T + LL+ +G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ A L ++G ++LD C+APGGKT H+LE+A + +++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVLAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LKPGG L++ TCS+ EE+ +Q F +
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKTFLQRTP 394
Query: 296 DSI-----RLNSPGQLLPTVNKKQDYDGFFYS 322
D+ + PGQ + ++ DGFFY+
Sbjct: 395 DAALSETGTPDQPGQQ--NLPGGEEGDGFFYA 424
>sp|B1JJH6|RSMB_YERPY Ribosomal RNA small subunit methyltransferase B OS=Yersinia
pseudotuberculosis serotype O:3 (strain YPIII) GN=rsmB
PE=3 SV=1
Length = 429
Score = 213 bits (542), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 118/331 (35%), Positives = 196/331 (59%), Gaps = 32/331 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + + N +S++ +P W + ++K YP QW+ ILD +++P
Sbjct: 117 LINGVLRQFQRQQVELLERAVNN--DSHYLHPSWLLARIKQAYPA--QWQQILDANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGL--ETTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + Y +LL ++ + E I A++L TP +++ +P F G+ ++QD
Sbjct: 173 PMWLRVNRLHHSRSEYLELLTQADINAEPHPIYRDAVRLITPCAVNHLPGFELGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LLD ++G +LD C+APGGKT H+LE A +++VD + RL+ + ENL+R
Sbjct: 233 ASAQGCVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLSRVKENLQR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L+A + + D + + ++ FDRIL D PC+ +GV+RR+PD
Sbjct: 293 LQLQAVVRVGDGRAPDT----------------WCGDQQFDRILLDAPCSATGVIRRHPD 336
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR DI +L++ +I+ +W LK GG L++ TCS+ EE+++Q F + H ++
Sbjct: 337 IKWLRRDRDISELAQLQSEIIEAIWPKLKHGGVLVYATCSILPEENQQQIAAFLQRHPEA 396
Query: 298 I-----RLNSPG-QLLPTVNKKQDYDGFFYS 322
+PG Q LP +D DGFFY+
Sbjct: 397 QLTETGTTAAPGKQNLP---HPEDGDGFFYA 424
>sp|Q664V2|RSMB_YERPS Ribosomal RNA small subunit methyltransferase B OS=Yersinia
pseudotuberculosis serotype I (strain IP32953) GN=rsmB
PE=3 SV=1
Length = 429
Score = 213 bits (542), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 118/331 (35%), Positives = 196/331 (59%), Gaps = 32/331 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + + N +S++ +P W + ++K YP QW+ ILD +++P
Sbjct: 117 LINGVLRQFQRQQVELLERAVNN--DSHYLHPSWLLARIKQAYPA--QWQQILDANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGL--ETTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + Y +LL ++ + E I A++L TP +++ +P F G+ ++QD
Sbjct: 173 PMWLRVNRLHHSRSEYLELLTQADINAEPHPIYRDAVRLITPCAVNHLPGFELGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LLD ++G +LD C+APGGKT H+LE A +++VD + RL+ + ENL+R
Sbjct: 233 ASAQGCVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLSRVKENLQR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L+A + + D + + ++ FDRIL D PC+ +GV+RR+PD
Sbjct: 293 LQLQAVVRVGDGRAPDT----------------WCGDQQFDRILLDAPCSATGVIRRHPD 336
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR DI +L++ +I+ +W LK GG L++ TCS+ EE+++Q F + H ++
Sbjct: 337 IKWLRRDRDISELAQLQSEIIEAIWPKLKHGGVLVYATCSILPEENQQQIAAFLQRHPEA 396
Query: 298 I-----RLNSPG-QLLPTVNKKQDYDGFFYS 322
+PG Q LP +D DGFFY+
Sbjct: 397 QLTETGTTAAPGKQNLP---HPEDGDGFFYA 424
>sp|A4TH21|RSMB_YERPP Ribosomal RNA small subunit methyltransferase B OS=Yersinia pestis
(strain Pestoides F) GN=rsmB PE=3 SV=1
Length = 429
Score = 213 bits (542), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 118/331 (35%), Positives = 196/331 (59%), Gaps = 32/331 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + + N +S++ +P W + ++K YP QW+ ILD +++P
Sbjct: 117 LINGVLRQFQRQQVELLERAVNN--DSHYLHPSWLLARIKQAYPA--QWQQILDANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGL--ETTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + Y +LL ++ + E I A++L TP +++ +P F G+ ++QD
Sbjct: 173 PMWLRVNRLHHSRSEYLELLTQADINAEPHPIYRDAVRLITPCAVNHLPGFELGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LLD ++G +LD C+APGGKT H+LE A +++VD + RL+ + ENL+R
Sbjct: 233 ASAQGCVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLSRVKENLQR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L+A + + D + + ++ FDRIL D PC+ +GV+RR+PD
Sbjct: 293 LQLQAVVRVGDGRAPDT----------------WCGDQQFDRILLDAPCSATGVIRRHPD 336
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR DI +L++ +I+ +W LK GG L++ TCS+ EE+++Q F + H ++
Sbjct: 337 IKWLRRDRDISELAQLQSEIIEAIWPKLKHGGVLVYATCSILPEENQQQIAAFLQRHPEA 396
Query: 298 I-----RLNSPG-QLLPTVNKKQDYDGFFYS 322
+PG Q LP +D DGFFY+
Sbjct: 397 QLTETGTTAAPGKQNLP---HPEDGDGFFYA 424
>sp|Q1CCX4|RSMB_YERPN Ribosomal RNA small subunit methyltransferase B OS=Yersinia pestis
bv. Antiqua (strain Nepal516) GN=rsmB PE=3 SV=1
Length = 429
Score = 213 bits (542), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 118/331 (35%), Positives = 196/331 (59%), Gaps = 32/331 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + + N +S++ +P W + ++K YP QW+ ILD +++P
Sbjct: 117 LINGVLRQFQRQQVELLERAVNN--DSHYLHPSWLLARIKQAYPA--QWQQILDANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGL--ETTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + Y +LL ++ + E I A++L TP +++ +P F G+ ++QD
Sbjct: 173 PMWLRVNRLHHSRSEYLELLTQADINAEPHPIYRDAVRLITPCAVNHLPGFELGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LLD ++G +LD C+APGGKT H+LE A +++VD + RL+ + ENL+R
Sbjct: 233 ASAQGCVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLSRVKENLQR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L+A + + D + + ++ FDRIL D PC+ +GV+RR+PD
Sbjct: 293 LQLQAVVRVGDGRAPDT----------------WCGDQQFDRILLDAPCSATGVIRRHPD 336
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR DI +L++ +I+ +W LK GG L++ TCS+ EE+++Q F + H ++
Sbjct: 337 IKWLRRDRDISELAQLQSEIIEAIWPKLKHGGVLVYATCSILPEENQQQIAAFLQRHPEA 396
Query: 298 I-----RLNSPG-QLLPTVNKKQDYDGFFYS 322
+PG Q LP +D DGFFY+
Sbjct: 397 QLTETGTTAAPGKQNLP---HPEDGDGFFYA 424
>sp|Q8ZJ81|RSMB_YERPE Ribosomal RNA small subunit methyltransferase B OS=Yersinia pestis
GN=rsmB PE=3 SV=1
Length = 429
Score = 213 bits (542), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 118/331 (35%), Positives = 196/331 (59%), Gaps = 32/331 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + + N +S++ +P W + ++K YP QW+ ILD +++P
Sbjct: 117 LINGVLRQFQRQQVELLERAVNN--DSHYLHPSWLLARIKQAYPA--QWQQILDANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGL--ETTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + Y +LL ++ + E I A++L TP +++ +P F G+ ++QD
Sbjct: 173 PMWLRVNRLHHSRSEYLELLTQADINAEPHPIYRDAVRLITPCAVNHLPGFELGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LLD ++G +LD C+APGGKT H+LE A +++VD + RL+ + ENL+R
Sbjct: 233 ASAQGCVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLSRVKENLQR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L+A + + D + + ++ FDRIL D PC+ +GV+RR+PD
Sbjct: 293 LQLQAVVRVGDGRAPDT----------------WCGDQQFDRILLDAPCSATGVIRRHPD 336
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR DI +L++ +I+ +W LK GG L++ TCS+ EE+++Q F + H ++
Sbjct: 337 IKWLRRDRDISELAQLQSEIIEAIWPKLKHGGVLVYATCSILPEENQQQIAAFLQRHPEA 396
Query: 298 I-----RLNSPG-QLLPTVNKKQDYDGFFYS 322
+PG Q LP +D DGFFY+
Sbjct: 397 QLTETGTTAAPGKQNLP---HPEDGDGFFYA 424
>sp|B2K506|RSMB_YERPB Ribosomal RNA small subunit methyltransferase B OS=Yersinia
pseudotuberculosis serotype IB (strain PB1/+) GN=rsmB
PE=3 SV=1
Length = 429
Score = 213 bits (542), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 118/331 (35%), Positives = 196/331 (59%), Gaps = 32/331 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + + N +S++ +P W + ++K YP QW+ ILD +++P
Sbjct: 117 LINGVLRQFQRQQVELLERAVNN--DSHYLHPSWLLARIKQAYPA--QWQQILDANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGL--ETTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + Y +LL ++ + E I A++L TP +++ +P F G+ ++QD
Sbjct: 173 PMWLRVNRLHHSRSEYLELLTQADINAEPHPIYRDAVRLITPCAVNHLPGFELGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LLD ++G +LD C+APGGKT H+LE A +++VD + RL+ + ENL+R
Sbjct: 233 ASAQGCVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLSRVKENLQR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L+A + + D + + ++ FDRIL D PC+ +GV+RR+PD
Sbjct: 293 LQLQAVVRVGDGRAPDT----------------WCGDQQFDRILLDAPCSATGVIRRHPD 336
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR DI +L++ +I+ +W LK GG L++ TCS+ EE+++Q F + H ++
Sbjct: 337 IKWLRRDRDISELAQLQSEIIEAIWPKLKHGGVLVYATCSILPEENQQQIAAFLQRHPEA 396
Query: 298 I-----RLNSPG-QLLPTVNKKQDYDGFFYS 322
+PG Q LP +D DGFFY+
Sbjct: 397 QLTETGTTAAPGKQNLP---HPEDGDGFFYA 424
>sp|Q1C2X7|RSMB_YERPA Ribosomal RNA small subunit methyltransferase B OS=Yersinia pestis
bv. Antiqua (strain Antiqua) GN=rsmB PE=3 SV=1
Length = 429
Score = 213 bits (542), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 118/331 (35%), Positives = 196/331 (59%), Gaps = 32/331 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + + N +S++ +P W + ++K YP QW+ ILD +++P
Sbjct: 117 LINGVLRQFQRQQVELLERAVNN--DSHYLHPSWLLARIKQAYPA--QWQQILDANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGL--ETTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + Y +LL ++ + E I A++L TP +++ +P F G+ ++QD
Sbjct: 173 PMWLRVNRLHHSRSEYLELLTQADINAEPHPIYRDAVRLITPCAVNHLPGFELGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LLD ++G +LD C+APGGKT H+LE A +++VD + RL+ + ENL+R
Sbjct: 233 ASAQGCVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLSRVKENLQR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L+A + + D + + ++ FDRIL D PC+ +GV+RR+PD
Sbjct: 293 LQLQAVVRVGDGRAPDT----------------WCGDQQFDRILLDAPCSATGVIRRHPD 336
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR DI +L++ +I+ +W LK GG L++ TCS+ EE+++Q F + H ++
Sbjct: 337 IKWLRRDRDISELAQLQSEIIEAIWPKLKHGGVLVYATCSILPEENQQQIAAFLQRHPEA 396
Query: 298 I-----RLNSPG-QLLPTVNKKQDYDGFFYS 322
+PG Q LP +D DGFFY+
Sbjct: 397 QLTETGTTAAPGKQNLP---HPEDGDGFFYA 424
>sp|A7FNK4|RSMB_YERP3 Ribosomal RNA small subunit methyltransferase B OS=Yersinia
pseudotuberculosis serotype O:1b (strain IP 31758)
GN=rsmB PE=3 SV=1
Length = 429
Score = 213 bits (542), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 118/331 (35%), Positives = 196/331 (59%), Gaps = 32/331 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + + N +S++ +P W + ++K YP QW+ ILD +++P
Sbjct: 117 LINGVLRQFQRQQVELLERAVNN--DSHYLHPSWLLARIKQAYPA--QWQQILDANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGL--ETTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + Y +LL ++ + E I A++L TP +++ +P F G+ ++QD
Sbjct: 173 PMWLRVNRLHHSRSEYLELLTQADINAEPHPIYRDAVRLITPCAVNHLPGFELGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LLD ++G +LD C+APGGKT H+LE A +++VD + RL+ + ENL+R
Sbjct: 233 ASAQGCVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLSRVKENLQR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L+A + + D + + ++ FDRIL D PC+ +GV+RR+PD
Sbjct: 293 LQLQAVVRVGDGRAPDT----------------WCGDQQFDRILLDAPCSATGVIRRHPD 336
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR DI +L++ +I+ +W LK GG L++ TCS+ EE+++Q F + H ++
Sbjct: 337 IKWLRRDRDISELAQLQSEIIEAIWPKLKHGGVLVYATCSILPEENQQQIAAFLQRHPEA 396
Query: 298 I-----RLNSPG-QLLPTVNKKQDYDGFFYS 322
+PG Q LP +D DGFFY+
Sbjct: 397 QLTETGTTAAPGKQNLP---HPEDGDGFFYA 424
>sp|B4TXB2|RSMB_SALSV Ribosomal RNA small subunit methyltransferase B OS=Salmonella
schwarzengrund (strain CVM19633) GN=rsmB PE=3 SV=1
Length = 429
Score = 213 bits (542), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 113/332 (34%), Positives = 194/332 (58%), Gaps = 34/332 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + ++ + +P W + +++ YP QW+ I+D +++P
Sbjct: 117 LINGVLRQFQRQQETLLNE--FATSDARFLHPGWLVKRLQNAYPT--QWQRIIDANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T + LL+ +G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ A L ++G ++LD C+APGGKT H+LE+A + +++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCAVFLAPQNGEHILDLCAAPGGKTSHILEVAPEADVLAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LKPGG L++ TCS+ EE+ +Q F +
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKTFLQRTP 394
Query: 296 DSI-----RLNSPGQLLPTVNKKQDYDGFFYS 322
D+ + PGQ + ++ DGFFY+
Sbjct: 395 DAALSETGTPDQPGQQ--NLPGGEEGDGFFYA 424
>sp|Q7MGK4|RSMB_VIBVY Ribosomal RNA small subunit methyltransferase B OS=Vibrio
vulnificus (strain YJ016) GN=rsmB PE=3 SV=1
Length = 426
Score = 212 bits (540), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 118/335 (35%), Positives = 190/335 (56%), Gaps = 30/335 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R++ + + + + Y +P W + ++ YP QW+ I++ + K
Sbjct: 113 LINAVLRNYQREQQALDEFSVSHNAGKY-VHPSWLLKILQDAYPE--QWQTIVEANNNKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N Y +LLK + +++T+ AIKL P + +P F G+ S+QD
Sbjct: 170 PMWLRVNHAHHDRDEYLQLLKNANIDSTLHSEAMDAIKLAAPCDVHSLPGFEQGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQL+ L + G +LD C+APGGKT H+LE ++ +++++D + RL ++ENLKR
Sbjct: 230 AAAQLSFNYLQPKDGELILDCCAAPGGKTAHILERVSAREVVALDCDEQRLKRVTENLKR 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
LNL+A +I D N ++++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 290 LNLQAKVICGD----------------ARNPEQWWQGEQFDRILLDAPCSATGVIRRHPD 333
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIF-----SK 292
I WLRR DI L++ +I + +W LKPGG L++ TCS+ E+ EQ F +
Sbjct: 334 IKWLRRAEDITALAQLQSEIFDAMWAQLKPGGTLVYATCSITPMENVEQVKAFLARTPAA 393
Query: 293 NHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 327
S R N Q+LP ++D DGF+Y++ K+
Sbjct: 394 QLVGSERENPGRQILPG---EEDMDGFYYAVLVKQ 425
>sp|A9N8B3|RSMB_SALPB Ribosomal RNA small subunit methyltransferase B OS=Salmonella
paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rsmB PE=3
SV=1
Length = 429
Score = 212 bits (540), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 112/332 (33%), Positives = 194/332 (58%), Gaps = 34/332 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + ++ + +P W + +++ YP QW+ I++ +++P
Sbjct: 117 LINGVLRQFQRQQETLLNE--FATSDARFLHPGWLVKRLQNAYPT--QWQRIIEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T + LL+ +G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ A L ++G ++LD C+APGGKT H+LE+A + +++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LKPGG L++ TCS+ EE+ +Q F +
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKTFLQRTP 394
Query: 296 DSI-----RLNSPGQLLPTVNKKQDYDGFFYS 322
D+ + PGQ + ++ DGFFY+
Sbjct: 395 DAALSETGTPDQPGQQ--NLPGGEEGDGFFYA 424
>sp|B4TJX9|RSMB_SALHS Ribosomal RNA small subunit methyltransferase B OS=Salmonella
heidelberg (strain SL476) GN=rsmB PE=3 SV=1
Length = 429
Score = 212 bits (539), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 112/332 (33%), Positives = 195/332 (58%), Gaps = 34/332 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQETLLNE--FATSDARFLHPGWLVKRLQNAYPT--QWQHIIEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T + LL+ +G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ A L ++G ++LD C+APGGKT H+LE+A + +++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVLAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LKPGG L++ TCS+ EE+ +Q F +
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKTFLQRTP 394
Query: 296 DSI-----RLNSPGQLLPTVNKKQDYDGFFYS 322
D+ + PGQ + ++ DGFFY+
Sbjct: 395 DAALSETGTPDQPGQQ--NLPGGEEGDGFFYA 424
>sp|B5RH47|RSMB_SALG2 Ribosomal RNA small subunit methyltransferase B OS=Salmonella
gallinarum (strain 287/91 / NCTC 13346) GN=rsmB PE=3
SV=1
Length = 429
Score = 212 bits (539), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 112/332 (33%), Positives = 195/332 (58%), Gaps = 34/332 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQETLLNE--FATSDARFLHPGWLVKRLQNAYPT--QWQHIIEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T + LL+ +G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ A L ++G ++LD C+APGGKT H+LE+A + +++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVLAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LKPGG L++ TCS+ EE+ +Q F +
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKTFLQRTP 394
Query: 296 DSI-----RLNSPGQLLPTVNKKQDYDGFFYS 322
D+ + PGQ + ++ DGFFY+
Sbjct: 395 DAALSETGTPDQPGQQ--NLPGGEEGDGFFYA 424
>sp|B5R1E5|RSMB_SALEP Ribosomal RNA small subunit methyltransferase B OS=Salmonella
enteritidis PT4 (strain P125109) GN=rsmB PE=3 SV=1
Length = 429
Score = 212 bits (539), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 112/332 (33%), Positives = 195/332 (58%), Gaps = 34/332 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQETLLNE--FATSDARFLHPGWLVKRLQNAYPT--QWQHIIEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T + LL+ +G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ A L ++G ++LD C+APGGKT H+LE+A + +++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVLAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LKPGG L++ TCS+ EE+ +Q F +
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKTFLQRTP 394
Query: 296 DSI-----RLNSPGQLLPTVNKKQDYDGFFYS 322
D+ + PGQ + ++ DGFFY+
Sbjct: 395 DAALSETGTPDQPGQQ--NLPGGEEGDGFFYA 424
>sp|Q7VKC4|RSMB_HAEDU Ribosomal RNA small subunit methyltransferase B OS=Haemophilus
ducreyi (strain 35000HP / ATCC 700724) GN=rsmB PE=3 SV=1
Length = 435
Score = 212 bits (539), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 128/341 (37%), Positives = 188/341 (55%), Gaps = 41/341 (12%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
+ N +LR FLR++ I + +W +P W +N +K YPN W+ I+D ++
Sbjct: 118 LTNGVLRRFLREQQTILAKV-----DKHWQTLHPEWLVNMLKQVYPN---WREIMDANNQ 169
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLETT----IIGPLAIKLHTPISISKIPKFFNGFC 114
+PP+ +R+N + T Y+ LL ++TT + AI+L P+S+ K+P F G+
Sbjct: 170 RPPMWIRVNTQHCTPQDYSALLGDLAVKTTNSSACLPSSAIQLVNPLSVDKLPYFSRGWA 229
Query: 115 SIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISE 173
++QD AQ +A LL ++G +LDAC+APGGKT H+LE A K+I++D SRL + E
Sbjct: 230 TVQDCHAQWSATLLAAKNGEMILDACAAPGGKTTHILEQAPQAKVIALDIEESRLVRVRE 289
Query: 174 NLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVR 233
NL RL L A + D + K L D+ FDRIL D PC+ +GV+R
Sbjct: 290 NLARLGLTADVRCGDATTPT-KWLADDV--------------MFDRILLDAPCSATGVIR 334
Query: 234 RNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKN 293
R+PDI WLR+ DI +L + KIL+ LW LKP G L++ TCS+ E+ EQ I F
Sbjct: 335 RHPDIKWLRQAGDISELVELQAKILSALWHRLKPNGTLVYATCSILPAENSEQIIQFITA 394
Query: 294 HKDS--IRLNSPG------QLLPTVNKKQDYDGFFYSLFQK 326
+ D+ I ++ G Q LP N DGFFY+ +K
Sbjct: 395 NPDAELIEMDFNGEKAIMKQFLPQQNGG---DGFFYAKLRK 432
>sp|Q8ZLM5|RSMB_SALTY Ribosomal RNA small subunit methyltransferase B OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=rsmB PE=3 SV=1
Length = 429
Score = 212 bits (539), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 112/332 (33%), Positives = 195/332 (58%), Gaps = 34/332 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQETLLNE--FATSDARFLHPGWLVKRLQNAYPT--QWQHIIEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T + LL+ +G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ A L ++G ++LD C+APGGKT H+LE+A + +++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVLAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LKPGG L++ TCS+ EE+ +Q F +
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKTFLQRTP 394
Query: 296 DSI-----RLNSPGQLLPTVNKKQDYDGFFYS 322
D+ + PGQ + ++ DGFFY+
Sbjct: 395 DAALSETGTPDQPGQQ--NLPGGEEGDGFFYA 424
>sp|B5BGV5|RSMB_SALPK Ribosomal RNA small subunit methyltransferase B OS=Salmonella
paratyphi A (strain AKU_12601) GN=rsmB PE=3 SV=1
Length = 429
Score = 212 bits (539), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 112/332 (33%), Positives = 194/332 (58%), Gaps = 34/332 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + ++ + +P W + +++ YP QW+ I++ +++P
Sbjct: 117 LINGVLRQFQRQQETLLNE--FATSDARFLHPGWLVKRLQNAYPT--QWQRIIEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T + LL+ +G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ A L ++G ++LD C+APGGKT H+LE+A + +++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVLAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LKPGG L++ TCS+ EE+ +Q F +
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILDTVWPRLKPGGTLVYATCSVLPEENRDQIKTFLQRTP 394
Query: 296 DSI-----RLNSPGQLLPTVNKKQDYDGFFYS 322
D+ + PGQ + ++ DGFFY+
Sbjct: 395 DAALSETGTPDQPGQQ--NLPGGEEGDGFFYA 424
>sp|Q5PIT6|RSMB_SALPA Ribosomal RNA small subunit methyltransferase B OS=Salmonella
paratyphi A (strain ATCC 9150 / SARB42) GN=rsmB PE=3
SV=1
Length = 429
Score = 212 bits (539), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 112/332 (33%), Positives = 194/332 (58%), Gaps = 34/332 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + ++ + +P W + +++ YP QW+ I++ +++P
Sbjct: 117 LINGVLRQFQRQQETLLNE--FATSDARFLHPGWLVKRLQNAYPT--QWQRIIEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T + LL+ +G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ A L ++G ++LD C+APGGKT H+LE+A + +++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVLAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LKPGG L++ TCS+ EE+ +Q F +
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILDTVWPRLKPGGTLVYATCSVLPEENRDQIKTFLQRTP 394
Query: 296 DSI-----RLNSPGQLLPTVNKKQDYDGFFYS 322
D+ + PGQ + ++ DGFFY+
Sbjct: 395 DAALSETGTPDQPGQQ--NLPGGEEGDGFFYA 424
>sp|B4SUR0|RSMB_SALNS Ribosomal RNA small subunit methyltransferase B OS=Salmonella
newport (strain SL254) GN=rsmB PE=3 SV=1
Length = 429
Score = 212 bits (539), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 112/332 (33%), Positives = 195/332 (58%), Gaps = 34/332 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQETLLNE--FATSDARFLHPGWLVKRLQNAYPT--QWQHIIEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T + LL+ +G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ A L ++G ++LD C+APGGKT H+LE+A + +++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVLAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LKPGG L++ TCS+ EE+ +Q F +
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKAFLQRTP 394
Query: 296 DSI-----RLNSPGQLLPTVNKKQDYDGFFYS 322
D+ + PGQ + ++ DGFFY+
Sbjct: 395 DAALSETGTPDQPGQQ--NLPGGEEGDGFFYA 424
>sp|Q8DDE5|RSMB_VIBVU Ribosomal RNA small subunit methyltransferase B OS=Vibrio
vulnificus (strain CMCP6) GN=rsmB PE=3 SV=1
Length = 426
Score = 211 bits (538), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 117/335 (34%), Positives = 190/335 (56%), Gaps = 30/335 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R++ + + + + Y +P W + ++ YP QW+ I++ + K
Sbjct: 113 LINAVLRNYQREQQALDEFSVSHNAGKY-VHPSWLLKILQDAYPE--QWQTIVEANNNKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N Y +LLK + +++T+ AIKL P + +P F G+ S+QD
Sbjct: 170 PMWLRVNHAHHDRDEYLQLLKNANIDSTLHSEAMDAIKLAAPCDVHSLPGFEQGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQL+ L + G +LD C+APGGKT H+LE ++ +++++D + RL ++ENLKR
Sbjct: 230 AAAQLSFNYLQPKDGELILDCCAAPGGKTAHILERVSAREVVALDCDEQRLKRVTENLKR 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
LNL+A +I D N ++++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 290 LNLQAKVICGD----------------ARNPEQWWQGEQFDRILLDAPCSATGVIRRHPD 333
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIF-----SK 292
I WLRR DI L++ +I + +W LKPGG L++ TCS+ E+ EQ F +
Sbjct: 334 IKWLRRAEDITALAQLQSEIFDAMWAQLKPGGTLVYATCSITPMENVEQVKAFLARTSAA 393
Query: 293 NHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 327
S R N Q++P ++D DGF+Y++ K+
Sbjct: 394 QLVGSERENPGRQIIPG---EEDMDGFYYAVLVKQ 425
>sp|Q6D000|RSMB_ERWCT Ribosomal RNA small subunit methyltransferase B OS=Erwinia
carotovora subsp. atroseptica (strain SCRI 1043 / ATCC
BAA-672) GN=rsmB PE=3 SV=1
Length = 429
Score = 211 bits (538), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 192/333 (57%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + + H S++ +P W + +++ YPN W+ I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLQREA--THSSHYLHPSWLLARIEHAYPN--NWRGIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T +Y LL + G+E AI+L +P ++ ++P F G+ ++QD
Sbjct: 173 PMWLRVNRLHHTREAYLNLLMQGGIEAFPHTEYSDAIRLASPCAVDQLPGFSQGWATVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LD + G +LD C+APGGKT H+LE A +++VD + +RL + ENL R
Sbjct: 233 ASAQGCVYWLDPQDGEQILDLCAAPGGKTTHILEAAPKSHVLAVDVDETRLGRVKENLLR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L + A + K+ + R+ + + + FDRIL D PC+ +GV+RR+
Sbjct: 293 LQMHAEV------------------KQGDGRYPDSWCEARVFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI++L +IL+ +W LK GG +++ TCS+ +E+ +Q F H
Sbjct: 335 PDIKWLRRDRDIEELVALQKEILDAIWPHLKTGGTMVYATCSILPQENTQQVTGFLSRHA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ +++ PG Q+LP + DGFFY+
Sbjct: 395 DAALVDTGTSEIPGIQILPHADSG---DGFFYA 424
>sp|B5FJI4|RSMB_SALDC Ribosomal RNA small subunit methyltransferase B OS=Salmonella
dublin (strain CT_02021853) GN=rsmB PE=3 SV=1
Length = 429
Score = 211 bits (538), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 113/332 (34%), Positives = 194/332 (58%), Gaps = 34/332 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + ++ + +P W + +++ YP QW+ I++ +++P
Sbjct: 117 LINGVLRQFQRQQETLLNE--FATSDARFLHPGWLVKRLQNAYPT--QWQRIIEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T + LL+ +G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ A L ++G ++LD CSAPGGKT H+LE+A + +++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCAVFLAPQNGEHILDLCSAPGGKTTHILEVAPEADVLAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LKPGG L++ TCS+ EE+ +Q F +
Sbjct: 335 PDIKWLRRDRDIVELAQLQAEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKTFLQRTP 394
Query: 296 DSI-----RLNSPGQLLPTVNKKQDYDGFFYS 322
D+ + PGQ + ++ DGFFY+
Sbjct: 395 DAALSETGTPDQPGQQ--NLPGGEEGDGFFYA 424
>sp|Q8Z1X1|RSMB_SALTI Ribosomal RNA small subunit methyltransferase B OS=Salmonella typhi
GN=rsmB PE=3 SV=1
Length = 429
Score = 211 bits (537), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 112/332 (33%), Positives = 194/332 (58%), Gaps = 34/332 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + ++ + +P W + +++ YP QW+ I++ +++P
Sbjct: 117 LINGVLRQFQRQQETLLNE--FATSDARFLHPGWLVKRLQNAYPT--QWQRIIEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T + LL+ +G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ A L ++G ++LD C+APGGKT H+LE+A + +++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVLAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LKPGG L++ TCS+ EE+ +Q F +
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKAFLQRTP 394
Query: 296 DSI-----RLNSPGQLLPTVNKKQDYDGFFYS 322
D+ + PGQ + ++ DGFFY+
Sbjct: 395 DAALSETGTPDQPGQQ--NLPGGEEGDGFFYA 424
>sp|Q3YWX1|RSMB_SHISS Ribosomal RNA small subunit methyltransferase B OS=Shigella sonnei
(strain Ss046) GN=rsmB PE=3 SV=1
Length = 429
Score = 211 bits (537), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 198/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FNTSDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVHDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>sp|A9MN78|RSMB_SALAR Ribosomal RNA small subunit methyltransferase B OS=Salmonella
arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
GN=rsmB PE=3 SV=1
Length = 429
Score = 211 bits (537), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 115/333 (34%), Positives = 193/333 (57%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQETLLNE--FATSDARFLHPGWLVKRLQNAYPT--QWQHIIEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T + LL+ +G++ P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE A + +++VD + RL+ I +NLKR
Sbjct: 233 ASAQKCVAFLAPQNGEHILDLCAAPGGKTTHILEAAPEADVLAVDVDEQRLSRIYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPAQWCDEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L+K +IL+ +W LKPGG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIAELAKLQAEILDTVWPRLKPGGTLVYATCSVLPEENSAQINAFLQRTP 394
Query: 296 DSI-----RLNSPGQL-LPTVNKKQDYDGFFYS 322
D+ + PGQ LP ++ DGFFY+
Sbjct: 395 DAALSETGTPDQPGQQNLPGA---EEGDGFFYA 424
>sp|Q32B61|RSMB_SHIDS Ribosomal RNA small subunit methyltransferase B OS=Shigella
dysenteriae serotype 1 (strain Sd197) GN=rsmB PE=3 SV=1
Length = 429
Score = 211 bits (536), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 115/333 (34%), Positives = 198/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FNTSDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LRIN+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGKHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>sp|P36929|RSMB_ECOLI Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
(strain K12) GN=rsmB PE=1 SV=2
Length = 429
Score = 211 bits (536), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 115/333 (34%), Positives = 198/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LRIN+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>sp|B1IQ11|RSMB_ECOLC Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
(strain ATCC 8739 / DSM 1576 / Crooks) GN=rsmB PE=3 SV=1
Length = 429
Score = 211 bits (536), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 115/333 (34%), Positives = 198/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LRIN+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>sp|A8A593|RSMB_ECOHS Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O9:H4 (strain HS) GN=rsmB PE=3 SV=1
Length = 429
Score = 211 bits (536), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 115/333 (34%), Positives = 198/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LRIN+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>sp|B1X6E1|RSMB_ECODH Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
(strain K12 / DH10B) GN=rsmB PE=3 SV=1
Length = 429
Score = 211 bits (536), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 115/333 (34%), Positives = 198/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LRIN+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>sp|C4ZUE3|RSMB_ECOBW Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
(strain K12 / MC4100 / BW2952) GN=rsmB PE=3 SV=1
Length = 429
Score = 211 bits (536), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 115/333 (34%), Positives = 198/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LRIN+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>sp|B6I202|RSMB_ECOSE Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
(strain SE11) GN=rsmB PE=3 SV=1
Length = 429
Score = 211 bits (536), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 198/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>sp|B7M0Z4|RSMB_ECO8A Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O8 (strain IAI1) GN=rsmB PE=3 SV=1
Length = 429
Score = 211 bits (536), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 198/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>sp|B7LHZ0|RSMB_ECO55 Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
(strain 55989 / EAEC) GN=rsmB PE=3 SV=1
Length = 429
Score = 211 bits (536), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 198/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>sp|A7ZSH7|RSMB_ECO24 Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O139:H28 (strain E24377A / ETEC) GN=rsmB PE=3 SV=1
Length = 429
Score = 211 bits (536), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 198/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
>sp|C6DFR7|RSMB_PECCP Ribosomal RNA small subunit methyltransferase B OS=Pectobacterium
carotovorum subsp. carotovorum (strain PC1) GN=rsmB PE=3
SV=1
Length = 429
Score = 210 bits (535), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 113/333 (33%), Positives = 191/333 (57%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + + H S++ +P W + +++ YPN W+ I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELIQREAN--HSSHYLHPSWLLARIEHAYPN--HWQTIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T +Y LL + G+E AI+L +P ++ ++P F G+ ++QD
Sbjct: 173 PMWLRVNRLHHTREAYLNLLAQEGIEAFPHTEFTDAIRLASPCAVDQLPGFSQGWATVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LD + G +LD C+APGGKT H+LE A +++VD + +RL + ENL R
Sbjct: 233 ASAQGCVYWLDPQDGEQILDLCAAPGGKTTHILEAAPQSHVLAVDIDETRLGRVKENLLR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L + A + K+ + R+ + + + FDRIL D PC+ +GV+RR+
Sbjct: 293 LQMHAEV------------------KQGDGRYPDSWCEGRMFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI++L +I + +W LK GG +++ TCS+ +E+ +Q F H
Sbjct: 335 PDIKWLRRDRDIEELVALQKEIFDAIWPHLKVGGTMVYATCSILPQENAQQVTDFLTRHA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ +++ PG Q+LP + DGFFY+
Sbjct: 395 DATLVDTGTRELPGIQMLPHADGG---DGFFYA 424
>sp|B7UK12|RSMB_ECO27 Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O127:H6 (strain E2348/69 / EPEC) GN=rsmB PE=3 SV=1
Length = 429
Score = 210 bits (535), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 198/333 (59%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ +N ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAE--FNASDARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KAT+ K+ + R+ ++ + FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKATV------------------KQGDGRYPSQWCGKQQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F +
Sbjct: 335 PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTA 394
Query: 296 DSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 322
D+ + PG Q LP ++ DGFFY+
Sbjct: 395 DAELCETGTPEQPGKQNLPGA---EEGDGFFYA 424
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.139 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 124,394,430
Number of Sequences: 539616
Number of extensions: 5221286
Number of successful extensions: 13615
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 12854
Number of HSP's gapped (non-prelim): 230
length of query: 329
length of database: 191,569,459
effective HSP length: 118
effective length of query: 211
effective length of database: 127,894,771
effective search space: 26985796681
effective search space used: 26985796681
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)