Query psy15212
Match_columns 329
No_of_seqs 282 out of 2940
Neff 7.9
Searched_HMMs 46136
Date Fri Aug 16 23:33:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15212.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15212hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0144 Sun tRNA and rRNA cyto 100.0 2.1E-70 4.5E-75 522.1 32.3 307 1-328 26-355 (355)
2 PRK14901 16S rRNA methyltransf 100.0 3.1E-67 6.8E-72 514.3 31.8 308 1-328 115-434 (434)
3 PRK14903 16S rRNA methyltransf 100.0 9.5E-67 2.1E-71 509.3 30.9 299 1-328 111-431 (431)
4 TIGR00563 rsmB ribosomal RNA s 100.0 4.1E-66 9E-71 505.5 31.2 304 1-327 109-426 (426)
5 PRK11933 yebU rRNA (cytosine-C 100.0 1.4E-65 3.1E-70 501.8 31.3 280 29-328 2-308 (470)
6 PRK10901 16S rRNA methyltransf 100.0 2E-64 4.4E-69 493.5 31.9 305 1-327 114-427 (427)
7 PRK14904 16S rRNA methyltransf 100.0 4.1E-62 8.8E-67 479.6 31.2 304 1-328 117-444 (445)
8 PRK14902 16S rRNA methyltransf 100.0 9.3E-62 2E-66 477.3 30.9 306 1-328 117-444 (444)
9 PF01189 Nol1_Nop2_Fmu: NOL1/N 100.0 3.4E-61 7.5E-66 446.1 20.1 255 52-325 1-283 (283)
10 KOG1122|consensus 100.0 6.3E-57 1.4E-61 420.7 18.7 286 23-328 129-442 (460)
11 TIGR00446 nop2p NOL1/NOP2/sun 100.0 2.9E-55 6.2E-60 403.6 27.2 242 64-326 1-264 (264)
12 KOG2198|consensus 100.0 7.6E-41 1.7E-45 310.1 14.9 252 37-298 30-319 (375)
13 KOG2360|consensus 100.0 7.5E-36 1.6E-40 276.8 16.5 252 56-327 126-413 (413)
14 PRK15128 23S rRNA m(5)C1962 me 99.7 2.7E-17 5.9E-22 159.1 16.0 167 104-300 195-367 (396)
15 COG1092 Predicted SAM-dependen 99.7 1.2E-16 2.7E-21 153.0 17.6 164 106-300 194-364 (393)
16 TIGR03533 L3_gln_methyl protei 99.7 3.8E-15 8.3E-20 138.5 18.1 157 130-322 119-282 (284)
17 PRK11783 rlmL 23S rRNA m(2)G24 99.7 3.5E-15 7.7E-20 154.5 18.6 158 91-283 504-664 (702)
18 PF13659 Methyltransf_26: Meth 99.7 3.2E-16 7E-21 125.9 8.6 114 133-276 1-116 (117)
19 TIGR00537 hemK_rel_arch HemK-r 99.7 2.7E-15 5.8E-20 130.1 14.7 156 118-300 5-161 (179)
20 COG4123 Predicted O-methyltran 99.6 3.5E-15 7.7E-20 134.3 15.2 151 120-294 32-185 (248)
21 PF05175 MTS: Methyltransferas 99.6 6.7E-16 1.5E-20 133.0 9.7 123 118-276 17-141 (170)
22 PRK14967 putative methyltransf 99.6 5.1E-15 1.1E-19 133.0 15.8 143 112-278 14-162 (223)
23 TIGR03704 PrmC_rel_meth putati 99.6 3E-15 6.5E-20 136.8 14.4 140 133-294 87-231 (251)
24 TIGR01177 conserved hypothetic 99.6 2.2E-15 4.9E-20 143.0 13.6 122 125-278 175-297 (329)
25 PF10672 Methyltrans_SAM: S-ad 99.6 9.7E-16 2.1E-20 141.6 10.7 146 103-283 97-246 (286)
26 PF12847 Methyltransf_18: Meth 99.6 3.7E-15 7.9E-20 118.7 10.7 108 132-276 1-112 (112)
27 PRK09328 N5-glutamine S-adenos 99.6 1E-14 2.2E-19 134.6 15.3 224 33-294 9-253 (275)
28 COG2226 UbiE Methylase involve 99.6 2.7E-14 5.8E-19 128.4 12.6 121 121-283 40-162 (238)
29 COG1041 Predicted DNA modifica 99.6 1.8E-14 3.9E-19 134.6 11.5 125 120-276 185-311 (347)
30 COG2263 Predicted RNA methylas 99.5 2.9E-13 6.3E-18 116.0 14.7 140 109-296 20-161 (198)
31 COG2242 CobL Precorrin-6B meth 99.5 4.1E-13 8.8E-18 115.3 15.5 130 120-296 22-153 (187)
32 PRK11805 N5-glutamine S-adenos 99.5 2E-13 4.3E-18 128.3 14.8 118 134-274 135-262 (307)
33 TIGR00080 pimt protein-L-isoas 99.5 1.8E-13 3.8E-18 122.3 13.7 109 121-275 66-177 (215)
34 PRK14968 putative methyltransf 99.5 6E-13 1.3E-17 115.5 16.8 155 121-300 12-169 (188)
35 PF01209 Ubie_methyltran: ubiE 99.5 5.7E-14 1.2E-18 126.9 10.6 129 123-294 38-169 (233)
36 PRK14966 unknown domain/N5-glu 99.5 6.7E-13 1.5E-17 127.9 18.3 180 116-326 234-420 (423)
37 PRK09489 rsmC 16S ribosomal RN 99.5 2.1E-13 4.6E-18 129.8 14.4 129 117-282 181-310 (342)
38 TIGR00536 hemK_fam HemK family 99.5 1.1E-12 2.4E-17 122.1 18.8 124 134-277 116-246 (284)
39 TIGR03534 RF_mod_PrmC protein- 99.5 4.7E-13 1E-17 121.7 15.7 142 132-298 87-235 (251)
40 PRK08287 cobalt-precorrin-6Y C 99.5 5.6E-13 1.2E-17 116.4 15.3 131 116-294 15-147 (187)
41 PRK04266 fibrillarin; Provisio 99.5 1.7E-12 3.7E-17 116.7 18.1 152 128-327 68-226 (226)
42 COG2519 GCD14 tRNA(1-methylade 99.5 8E-13 1.7E-17 118.3 14.8 137 95-277 57-198 (256)
43 PRK00377 cbiT cobalt-precorrin 99.5 9.3E-13 2E-17 116.1 15.0 129 121-294 29-161 (198)
44 PRK15001 SAM-dependent 23S rib 99.5 1.9E-12 4.2E-17 124.3 17.7 124 118-277 214-342 (378)
45 TIGR00138 gidB 16S rRNA methyl 99.5 1.6E-12 3.4E-17 113.2 15.0 129 132-309 42-174 (181)
46 PRK07402 precorrin-6B methylas 99.5 1.1E-12 2.3E-17 115.5 14.0 123 112-277 20-144 (196)
47 PRK13942 protein-L-isoaspartat 99.5 1E-12 2.2E-17 117.2 13.7 117 112-274 56-175 (212)
48 COG2813 RsmC 16S RNA G1207 met 99.5 3.7E-12 8E-17 117.2 17.2 154 117-326 143-299 (300)
49 PRK00121 trmB tRNA (guanine-N( 99.5 9.1E-13 2E-17 116.6 12.5 115 132-276 40-157 (202)
50 PRK13944 protein-L-isoaspartat 99.4 1.9E-12 4E-17 114.9 14.4 108 121-274 61-172 (205)
51 PF13847 Methyltransf_31: Meth 99.4 7.6E-13 1.6E-17 111.6 11.3 108 131-277 2-112 (152)
52 TIGR02469 CbiT precorrin-6Y C5 99.4 3.3E-12 7.1E-17 103.0 14.3 108 126-275 13-122 (124)
53 COG2890 HemK Methylase of poly 99.4 2.3E-12 4.9E-17 119.5 14.9 160 111-294 87-254 (280)
54 PRK00107 gidB 16S rRNA methylt 99.4 4.4E-12 9.5E-17 110.8 15.8 130 131-310 44-175 (187)
55 PTZ00146 fibrillarin; Provisio 99.4 5.1E-12 1.1E-16 116.7 15.5 113 121-274 115-236 (293)
56 PF01170 UPF0020: Putative RNA 99.4 2.6E-12 5.6E-17 111.6 12.9 122 121-276 17-150 (179)
57 TIGR02752 MenG_heptapren 2-hep 99.4 3.8E-12 8.2E-17 114.5 14.2 114 122-275 35-151 (231)
58 COG2518 Pcm Protein-L-isoaspar 99.4 2.7E-12 5.8E-17 112.6 12.1 98 111-227 51-149 (209)
59 KOG1540|consensus 99.4 2.7E-12 5.8E-17 114.4 12.2 137 123-303 91-238 (296)
60 PLN02244 tocopherol O-methyltr 99.4 3.7E-12 8.1E-17 121.5 14.2 107 131-277 117-225 (340)
61 PRK00312 pcm protein-L-isoaspa 99.4 6.7E-12 1.5E-16 111.7 14.2 114 116-276 62-176 (212)
62 PF02353 CMAS: Mycolic acid cy 99.4 1.5E-12 3.3E-17 120.2 10.0 122 117-279 47-170 (273)
63 PRK03522 rumB 23S rRNA methylu 99.4 2.9E-12 6.2E-17 121.0 11.8 84 128-229 169-253 (315)
64 COG2230 Cfa Cyclopropane fatty 99.4 4.5E-12 9.7E-17 116.3 12.4 136 117-294 57-194 (283)
65 COG2227 UbiG 2-polyprenyl-3-me 99.4 1.5E-12 3.2E-17 115.8 8.6 106 131-277 58-163 (243)
66 PLN02233 ubiquinone biosynthes 99.4 1.4E-11 3.1E-16 113.2 15.5 115 123-277 64-184 (261)
67 PF08704 GCD14: tRNA methyltra 99.4 2.9E-12 6.3E-17 116.2 10.6 117 118-276 26-148 (247)
68 COG2264 PrmA Ribosomal protein 99.4 1.1E-11 2.5E-16 114.5 14.5 137 117-301 145-285 (300)
69 PRK13168 rumA 23S rRNA m(5)U19 99.4 6.3E-12 1.4E-16 124.0 13.4 88 127-229 292-380 (443)
70 PRK01544 bifunctional N5-gluta 99.4 1.1E-11 2.5E-16 123.9 15.0 139 132-294 138-284 (506)
71 PRK11873 arsM arsenite S-adeno 99.4 1.9E-11 4.1E-16 112.9 14.9 108 128-275 73-183 (272)
72 PRK11188 rrmJ 23S rRNA methylt 99.3 3.8E-11 8.2E-16 106.9 16.0 151 130-323 49-205 (209)
73 TIGR00406 prmA ribosomal prote 99.3 2E-11 4.3E-16 113.9 14.8 130 117-294 142-275 (288)
74 TIGR00452 methyltransferase, p 99.3 7E-11 1.5E-15 111.1 18.3 193 30-280 22-230 (314)
75 PF01135 PCMT: Protein-L-isoas 99.3 3.8E-12 8.3E-17 113.0 8.8 117 112-274 52-171 (209)
76 TIGR00091 tRNA (guanine-N(7)-) 99.3 1.1E-11 2.4E-16 109.0 11.7 138 132-301 16-155 (194)
77 PRK14121 tRNA (guanine-N(7)-)- 99.3 1.3E-11 2.8E-16 118.4 13.0 128 116-277 108-237 (390)
78 PLN02781 Probable caffeoyl-CoA 99.3 3.4E-11 7.3E-16 109.0 15.1 121 121-278 57-181 (234)
79 TIGR00479 rumA 23S rRNA (uraci 99.3 1E-11 2.2E-16 122.2 12.1 111 126-277 286-397 (431)
80 PF06325 PrmA: Ribosomal prote 99.3 4.5E-12 9.7E-17 117.9 8.8 150 117-327 144-295 (295)
81 PLN02476 O-methyltransferase 99.3 5.7E-11 1.2E-15 109.4 15.9 129 115-280 101-233 (278)
82 PRK11207 tellurite resistance 99.3 3.4E-11 7.5E-16 106.1 13.2 112 123-274 21-133 (197)
83 PHA03411 putative methyltransf 99.3 6.9E-11 1.5E-15 108.2 15.2 147 129-301 61-211 (279)
84 PRK10909 rsmD 16S rRNA m(2)G96 99.3 2.7E-11 5.8E-16 106.8 12.1 80 131-227 52-132 (199)
85 PTZ00098 phosphoethanolamine N 99.3 2.9E-11 6.2E-16 111.4 12.7 127 109-275 28-156 (263)
86 TIGR00477 tehB tellurite resis 99.3 3.3E-11 7.2E-16 106.1 12.4 111 125-275 23-133 (195)
87 TIGR00438 rrmJ cell division p 99.3 6.7E-11 1.5E-15 103.4 14.3 114 129-274 29-145 (188)
88 PRK00517 prmA ribosomal protei 99.3 1.1E-10 2.3E-15 106.8 16.1 129 120-301 105-235 (250)
89 PLN02336 phosphoethanolamine N 99.3 5.7E-11 1.2E-15 118.3 15.4 114 124-277 258-371 (475)
90 PF02475 Met_10: Met-10+ like- 99.3 7.5E-12 1.6E-16 110.2 8.0 99 130-273 99-200 (200)
91 PLN02396 hexaprenyldihydroxybe 99.3 1.1E-10 2.3E-15 110.3 15.7 105 130-275 129-235 (322)
92 PRK15068 tRNA mo(5)U34 methylt 99.3 1.7E-10 3.7E-15 109.2 17.1 112 124-276 114-227 (322)
93 COG2265 TrmA SAM-dependent met 99.3 2.9E-11 6.3E-16 118.1 11.8 111 124-276 285-396 (432)
94 PF03602 Cons_hypoth95: Conser 99.3 1.6E-11 3.6E-16 106.9 8.9 109 132-276 42-154 (183)
95 PF08241 Methyltransf_11: Meth 99.3 7.3E-12 1.6E-16 95.8 5.7 95 137-273 1-95 (95)
96 PRK10258 biotin biosynthesis p 99.3 2.6E-11 5.6E-16 110.6 10.1 115 116-275 26-140 (251)
97 PRK13943 protein-L-isoaspartat 99.3 9.5E-11 2.1E-15 110.6 13.7 105 125-275 73-180 (322)
98 KOG2904|consensus 99.2 1.4E-10 3.1E-15 104.4 13.9 146 132-293 148-301 (328)
99 TIGR02085 meth_trns_rumB 23S r 99.2 4.8E-11 1E-15 115.2 11.4 81 130-228 231-312 (374)
100 PRK01683 trans-aconitate 2-met 99.2 1.6E-10 3.4E-15 105.9 14.2 114 117-275 16-130 (258)
101 PHA03412 putative methyltransf 99.2 4.8E-11 1E-15 106.8 10.4 122 115-272 35-160 (241)
102 PRK04338 N(2),N(2)-dimethylgua 99.2 7E-11 1.5E-15 114.1 12.4 112 121-277 45-159 (382)
103 PRK15451 tRNA cmo(5)U34 methyl 99.2 1E-10 2.2E-15 106.7 12.8 106 130-276 54-165 (247)
104 PRK14103 trans-aconitate 2-met 99.2 6.7E-11 1.5E-15 108.3 11.6 103 125-274 22-125 (255)
105 PRK11036 putative S-adenosyl-L 99.2 8E-11 1.7E-15 107.8 12.0 105 131-275 43-149 (255)
106 PF02384 N6_Mtase: N-6 DNA Met 99.2 3.5E-11 7.7E-16 113.2 9.7 180 111-309 25-220 (311)
107 PF05958 tRNA_U5-meth_tr: tRNA 99.2 6.1E-11 1.3E-15 113.6 11.2 159 125-327 190-352 (352)
108 PRK08317 hypothetical protein; 99.2 1.7E-10 3.7E-15 103.4 13.4 113 125-277 12-126 (241)
109 COG4122 Predicted O-methyltran 99.2 4.9E-10 1.1E-14 99.6 15.9 121 118-279 45-170 (219)
110 PRK11705 cyclopropane fatty ac 99.2 1.6E-10 3.4E-15 111.9 13.2 114 121-277 156-269 (383)
111 COG0742 N6-adenine-specific me 99.2 1.9E-10 4E-15 99.4 11.8 110 131-275 42-154 (187)
112 PRK06922 hypothetical protein; 99.2 2.6E-10 5.7E-15 115.0 14.6 126 127-278 413-540 (677)
113 PF01596 Methyltransf_3: O-met 99.2 3.2E-10 7E-15 100.4 13.3 154 122-323 35-203 (205)
114 PF13649 Methyltransf_25: Meth 99.2 4.4E-11 9.5E-16 93.8 6.8 97 136-269 1-101 (101)
115 PLN02672 methionine S-methyltr 99.2 1.5E-10 3.3E-15 123.1 12.9 166 111-298 93-297 (1082)
116 TIGR00095 RNA methyltransferas 99.2 2E-10 4.4E-15 100.6 11.5 81 132-227 49-132 (189)
117 PRK05031 tRNA (uracil-5-)-meth 99.2 1E-10 2.2E-15 112.5 10.3 92 133-228 207-300 (362)
118 COG2520 Predicted methyltransf 99.2 1.6E-10 3.5E-15 108.9 10.7 141 110-294 157-311 (341)
119 PF09445 Methyltransf_15: RNA 99.2 2.9E-10 6.3E-15 96.6 11.1 84 134-234 1-87 (163)
120 PRK12335 tellurite resistance 99.1 6.7E-10 1.5E-14 103.5 12.9 103 132-274 120-222 (287)
121 TIGR02143 trmA_only tRNA (urac 99.1 2.3E-10 4.9E-15 109.7 9.6 90 134-228 199-291 (353)
122 smart00650 rADc Ribosomal RNA 99.1 7.6E-10 1.6E-14 95.1 11.9 83 125-227 6-88 (169)
123 PF05401 NodS: Nodulation prot 99.1 4.3E-10 9.3E-15 97.6 10.2 164 114-327 25-197 (201)
124 smart00828 PKS_MT Methyltransf 99.1 8.1E-10 1.8E-14 98.9 12.4 102 134-276 1-105 (224)
125 TIGR00308 TRM1 tRNA(guanine-26 99.1 3.6E-10 7.8E-15 108.7 10.6 117 117-277 26-148 (374)
126 TIGR00740 methyltransferase, p 99.1 1.5E-09 3.3E-14 98.4 13.8 106 130-275 51-161 (239)
127 PRK00216 ubiE ubiquinone/menaq 99.1 2.7E-09 5.8E-14 95.9 15.3 115 123-277 42-160 (239)
128 cd02440 AdoMet_MTases S-adenos 99.1 1.3E-09 2.9E-14 83.1 11.1 102 135-274 1-103 (107)
129 PRK00811 spermidine synthase; 99.1 2.5E-09 5.4E-14 99.5 14.8 111 132-277 76-193 (283)
130 KOG1270|consensus 99.1 4.8E-10 1E-14 100.7 9.5 103 130-276 87-196 (282)
131 PRK04457 spermidine synthase; 99.1 4.8E-09 1E-13 96.6 15.1 129 131-295 65-196 (262)
132 KOG2671|consensus 99.1 2E-10 4.3E-15 106.3 5.6 160 119-300 195-375 (421)
133 PF03848 TehB: Tellurite resis 99.1 1.7E-09 3.6E-14 94.5 11.1 119 116-275 15-133 (192)
134 COG2521 Predicted archaeal met 99.0 2.6E-10 5.7E-15 100.5 5.6 115 125-274 127-244 (287)
135 TIGR02716 C20_methyl_CrtF C-20 99.0 4.9E-09 1.1E-13 98.6 13.6 122 121-283 138-262 (306)
136 PLN03075 nicotianamine synthas 99.0 2.7E-09 5.8E-14 99.0 11.4 105 132-275 123-233 (296)
137 COG0293 FtsJ 23S rRNA methylas 99.0 6.5E-09 1.4E-13 91.1 13.1 158 130-327 43-203 (205)
138 PF08242 Methyltransf_12: Meth 99.0 2.2E-10 4.8E-15 89.2 3.5 97 137-271 1-99 (99)
139 KOG1271|consensus 99.0 2.8E-09 6.1E-14 90.8 10.2 120 134-288 69-194 (227)
140 PRK05134 bifunctional 3-demeth 99.0 5.8E-09 1.3E-13 94.0 13.0 115 123-277 39-153 (233)
141 TIGR00417 speE spermidine synt 99.0 1.2E-08 2.6E-13 94.4 15.3 111 133-278 73-189 (270)
142 PRK00050 16S rRNA m(4)C1402 me 99.0 8.8E-09 1.9E-13 95.9 14.1 88 125-229 12-103 (296)
143 TIGR01934 MenG_MenH_UbiE ubiqu 99.0 1.4E-08 3E-13 90.2 14.9 112 125-277 32-145 (223)
144 PF01728 FtsJ: FtsJ-like methy 99.0 1.1E-09 2.4E-14 95.0 7.5 152 130-323 21-179 (181)
145 PLN02490 MPBQ/MSBQ methyltrans 99.0 3.6E-09 7.8E-14 100.5 11.6 102 131-274 112-214 (340)
146 TIGR02072 BioC biotin biosynth 99.0 3E-09 6.4E-14 95.4 10.5 101 132-275 34-135 (240)
147 PLN02589 caffeoyl-CoA O-methyl 99.0 9.9E-09 2.2E-13 93.4 13.7 125 118-278 65-193 (247)
148 TIGR03438 probable methyltrans 99.0 8.1E-09 1.7E-13 97.0 13.0 110 131-278 62-180 (301)
149 KOG2915|consensus 98.9 1.3E-08 2.8E-13 91.8 12.0 122 121-291 94-220 (314)
150 PLN02336 phosphoethanolamine N 98.9 1E-08 2.2E-13 102.1 12.7 120 122-279 27-146 (475)
151 KOG4589|consensus 98.9 1.9E-08 4.1E-13 86.1 12.3 157 130-327 67-228 (232)
152 TIGR01983 UbiG ubiquinone bios 98.9 1.5E-08 3.3E-13 90.5 12.0 106 132-277 45-151 (224)
153 TIGR02021 BchM-ChlM magnesium 98.9 3.3E-08 7.1E-13 88.4 13.4 103 130-274 53-157 (219)
154 PRK01581 speE spermidine synth 98.9 1.7E-08 3.7E-13 95.9 12.0 110 133-276 151-269 (374)
155 PF02390 Methyltransf_4: Putat 98.9 1.1E-08 2.3E-13 90.1 10.0 137 133-300 18-156 (195)
156 PRK11727 23S rRNA mA1618 methy 98.9 2.2E-08 4.9E-13 94.3 12.5 84 132-230 114-203 (321)
157 PRK11088 rrmA 23S rRNA methylt 98.9 2.1E-08 4.6E-13 92.7 12.1 94 131-275 84-181 (272)
158 COG0220 Predicted S-adenosylme 98.9 1.1E-08 2.4E-13 91.9 9.5 120 134-289 50-172 (227)
159 TIGR03840 TMPT_Se_Te thiopurin 98.9 1.9E-08 4.2E-13 89.7 11.1 110 131-278 33-155 (213)
160 COG4106 Tam Trans-aconitate me 98.9 5.9E-09 1.3E-13 91.2 7.2 131 116-292 15-146 (257)
161 PLN02585 magnesium protoporphy 98.8 1.8E-08 3.8E-13 95.0 10.6 59 132-191 144-208 (315)
162 PLN02366 spermidine synthase 98.8 1.1E-07 2.4E-12 89.4 15.9 109 132-274 91-205 (308)
163 COG0116 Predicted N6-adenine-s 98.8 5.8E-08 1.3E-12 92.4 13.7 141 104-276 157-345 (381)
164 TIGR03587 Pse_Me-ase pseudamin 98.8 7.7E-08 1.7E-12 85.3 13.3 129 129-302 40-181 (204)
165 smart00138 MeTrc Methyltransfe 98.8 2.5E-08 5.4E-13 91.9 10.5 107 131-276 98-243 (264)
166 PTZ00338 dimethyladenosine tra 98.8 2.3E-08 5E-13 93.4 9.8 88 121-229 25-114 (294)
167 PF13489 Methyltransf_23: Meth 98.8 2.4E-08 5.2E-13 83.9 9.0 106 122-277 11-117 (161)
168 PF08003 Methyltransf_9: Prote 98.8 7.2E-07 1.6E-11 82.5 19.1 199 29-282 15-226 (315)
169 PRK00274 ksgA 16S ribosomal RN 98.8 2.2E-08 4.7E-13 92.7 8.5 86 122-228 32-117 (272)
170 PRK03612 spermidine synthase; 98.8 5.7E-08 1.2E-12 97.8 12.2 114 131-278 296-418 (521)
171 KOG3420|consensus 98.8 6.7E-09 1.5E-13 85.3 4.5 78 131-226 47-124 (185)
172 PRK05785 hypothetical protein; 98.8 4.8E-08 1E-12 88.0 10.3 91 132-269 51-141 (226)
173 KOG2187|consensus 98.7 2.7E-08 5.9E-13 96.9 8.4 118 125-281 376-495 (534)
174 PRK14896 ksgA 16S ribosomal RN 98.7 5E-08 1.1E-12 89.6 9.7 86 121-228 18-103 (258)
175 PRK13255 thiopurine S-methyltr 98.7 1.2E-07 2.7E-12 84.8 11.2 119 118-275 21-155 (218)
176 KOG1663|consensus 98.7 2.7E-07 5.8E-12 81.7 12.8 128 114-278 55-186 (237)
177 KOG1541|consensus 98.7 1.4E-07 3E-12 82.9 10.4 144 112-293 28-174 (270)
178 PRK06202 hypothetical protein; 98.7 1.1E-07 2.3E-12 85.9 10.0 78 126-223 54-136 (232)
179 TIGR02987 met_A_Alw26 type II 98.7 1.8E-07 3.9E-12 94.4 12.5 165 133-310 32-235 (524)
180 COG4976 Predicted methyltransf 98.7 5.4E-08 1.2E-12 85.9 7.3 150 132-325 125-286 (287)
181 PRK11783 rlmL 23S rRNA m(2)G24 98.7 3.8E-07 8.3E-12 95.0 14.8 107 105-227 156-314 (702)
182 PF01269 Fibrillarin: Fibrilla 98.7 2.5E-07 5.5E-12 81.8 11.3 161 120-326 55-229 (229)
183 PRK01544 bifunctional N5-gluta 98.7 4.6E-07 9.9E-12 90.9 14.7 137 131-300 346-484 (506)
184 TIGR00006 S-adenosyl-methyltra 98.7 7.7E-07 1.7E-11 83.2 14.9 92 125-229 13-105 (305)
185 KOG3191|consensus 98.6 6.3E-07 1.4E-11 76.5 12.2 136 133-294 44-184 (209)
186 PRK07580 Mg-protoporphyrin IX 98.6 4.7E-07 1E-11 81.1 12.2 58 131-189 62-121 (230)
187 PRK10742 putative methyltransf 98.6 1.7E-07 3.6E-12 84.7 9.1 89 121-227 75-175 (250)
188 PF07021 MetW: Methionine bios 98.6 3.7E-07 8.1E-12 79.2 10.8 71 130-222 11-81 (193)
189 PLN02823 spermine synthase 98.6 1.1E-06 2.3E-11 83.6 15.0 132 133-298 104-247 (336)
190 KOG1596|consensus 98.6 9E-07 1.9E-11 78.7 11.5 132 121-294 139-283 (317)
191 COG4076 Predicted RNA methylas 98.5 1.1E-07 2.5E-12 81.4 5.6 98 134-272 34-132 (252)
192 PF03291 Pox_MCEL: mRNA cappin 98.5 6.6E-07 1.4E-11 84.9 9.6 112 132-275 62-186 (331)
193 TIGR00755 ksgA dimethyladenosi 98.5 1.3E-06 2.8E-11 80.0 11.1 84 122-227 19-105 (253)
194 KOG2899|consensus 98.5 6E-07 1.3E-11 80.0 8.4 46 133-178 59-105 (288)
195 KOG1661|consensus 98.5 6.5E-07 1.4E-11 78.2 8.5 101 127-273 75-191 (237)
196 COG0286 HsdM Type I restrictio 98.5 8E-07 1.7E-11 88.8 10.3 169 112-293 166-346 (489)
197 COG0275 Predicted S-adenosylme 98.4 7.4E-06 1.6E-10 75.5 15.0 93 124-229 15-109 (314)
198 KOG2730|consensus 98.4 4E-07 8.7E-12 79.9 5.3 110 109-233 69-182 (263)
199 COG0030 KsgA Dimethyladenosine 98.4 1.6E-06 3.5E-11 79.0 9.1 88 122-229 20-108 (259)
200 PF01564 Spermine_synth: Sperm 98.3 6.3E-06 1.4E-10 75.2 12.2 109 132-275 76-191 (246)
201 KOG4300|consensus 98.3 1.8E-06 4E-11 75.2 8.1 116 134-293 78-197 (252)
202 COG1889 NOP1 Fibrillarin-like 98.3 1.1E-05 2.4E-10 70.2 12.7 130 120-291 58-199 (231)
203 PF05185 PRMT5: PRMT5 arginine 98.3 3E-06 6.5E-11 83.6 9.9 117 133-288 187-312 (448)
204 PF01861 DUF43: Protein of unk 98.3 7.7E-06 1.7E-10 73.4 11.3 126 132-299 44-173 (243)
205 PF01795 Methyltransf_5: MraW 98.3 8E-07 1.7E-11 83.0 5.0 93 124-229 12-106 (310)
206 TIGR02081 metW methionine bios 98.3 4E-06 8.8E-11 73.5 9.2 72 131-224 12-83 (194)
207 PF05219 DREV: DREV methyltran 98.3 4.9E-06 1.1E-10 75.4 9.5 172 30-274 7-187 (265)
208 PRK13256 thiopurine S-methyltr 98.3 6.6E-06 1.4E-10 73.9 10.4 112 130-278 41-166 (226)
209 PF02527 GidB: rRNA small subu 98.3 9.3E-06 2E-10 70.8 10.7 97 135-276 51-149 (184)
210 KOG1499|consensus 98.2 6.7E-06 1.5E-10 77.2 10.1 111 132-280 60-172 (346)
211 PF12147 Methyltransf_20: Puta 98.2 6.1E-05 1.3E-09 69.3 14.9 127 133-296 136-268 (311)
212 PF10294 Methyltransf_16: Puta 98.2 5.7E-06 1.2E-10 71.4 7.6 114 130-281 43-161 (173)
213 PF02005 TRM: N2,N2-dimethylgu 98.1 4.1E-06 8.9E-11 80.9 6.1 101 133-277 50-155 (377)
214 COG0421 SpeE Spermidine syntha 98.1 8.5E-05 1.8E-09 68.9 14.5 117 125-277 70-192 (282)
215 KOG0820|consensus 98.1 1.4E-05 3.1E-10 72.4 8.7 124 125-279 51-180 (315)
216 COG3963 Phospholipid N-methylt 98.1 2.2E-05 4.9E-10 66.3 8.7 116 125-277 41-158 (194)
217 KOG1099|consensus 98.1 1.1E-05 2.3E-10 71.5 6.8 116 134-288 43-173 (294)
218 PF00891 Methyltransf_2: O-met 98.0 7.9E-05 1.7E-09 67.5 11.3 114 125-285 93-209 (241)
219 COG0357 GidB Predicted S-adeno 98.0 0.00016 3.4E-09 64.4 12.7 95 133-272 68-165 (215)
220 TIGR00478 tly hemolysin TlyA f 97.9 4.2E-05 9.2E-10 68.9 8.8 40 131-170 74-113 (228)
221 PLN02232 ubiquinone biosynthes 97.9 3.8E-05 8.3E-10 65.3 8.1 79 159-277 1-83 (160)
222 KOG1500|consensus 97.9 7E-05 1.5E-09 69.8 10.2 114 132-285 177-294 (517)
223 KOG3010|consensus 97.9 4.4E-05 9.5E-10 68.2 8.5 105 123-269 23-130 (261)
224 TIGR00497 hsdM type I restrict 97.9 0.00031 6.7E-09 70.7 15.3 147 111-273 194-353 (501)
225 KOG1975|consensus 97.9 4.8E-05 1E-09 70.6 8.4 136 121-294 108-250 (389)
226 PF05724 TPMT: Thiopurine S-me 97.9 1E-05 2.2E-10 72.5 3.6 110 129-276 34-156 (218)
227 PF04816 DUF633: Family of unk 97.9 0.00021 4.6E-09 63.3 11.9 118 136-301 1-121 (205)
228 PRK11760 putative 23S rRNA C24 97.9 7.6E-05 1.6E-09 70.5 9.3 167 36-227 73-281 (357)
229 PF08123 DOT1: Histone methyla 97.9 0.0001 2.2E-09 65.4 9.6 117 126-281 36-163 (205)
230 KOG2361|consensus 97.8 5.1E-05 1.1E-09 67.8 7.4 106 135-274 74-182 (264)
231 PF11599 AviRa: RRNA methyltra 97.8 0.00048 1E-08 60.7 12.6 60 118-177 34-99 (246)
232 COG1867 TRM1 N2,N2-dimethylgua 97.8 5.7E-05 1.2E-09 71.5 7.4 101 133-277 53-155 (380)
233 PF13578 Methyltransf_24: Meth 97.8 7.5E-06 1.6E-10 64.4 1.1 99 137-275 1-105 (106)
234 PF00398 RrnaAD: Ribosomal RNA 97.8 9E-05 1.9E-09 68.2 8.3 90 121-227 19-108 (262)
235 COG3897 Predicted methyltransf 97.8 2.6E-05 5.7E-10 67.6 4.2 70 132-222 79-148 (218)
236 cd00315 Cyt_C5_DNA_methylase C 97.8 4.5E-05 9.7E-10 70.8 6.0 79 135-234 2-80 (275)
237 PF06080 DUF938: Protein of un 97.7 0.0004 8.8E-09 61.1 10.7 134 132-296 25-167 (204)
238 KOG1253|consensus 97.7 3E-05 6.5E-10 75.6 3.8 107 130-277 107-217 (525)
239 PF04989 CmcI: Cephalosporin h 97.7 0.00022 4.8E-09 62.9 8.3 157 111-301 10-187 (206)
240 PRK04148 hypothetical protein; 97.6 0.0008 1.7E-08 55.4 10.6 57 130-193 14-71 (134)
241 PF06962 rRNA_methylase: Putat 97.6 0.00034 7.3E-09 58.0 8.2 115 157-300 1-121 (140)
242 PF05148 Methyltransf_8: Hypot 97.6 0.0007 1.5E-08 59.7 10.3 139 119-328 59-199 (219)
243 TIGR03439 methyl_EasF probable 97.5 0.00081 1.8E-08 63.6 10.9 110 131-275 75-197 (319)
244 PRK00536 speE spermidine synth 97.5 0.0017 3.6E-08 59.7 12.6 100 130-279 71-175 (262)
245 PF05891 Methyltransf_PK: AdoM 97.5 0.00029 6.3E-09 62.5 6.9 101 133-274 56-160 (218)
246 COG1189 Predicted rRNA methyla 97.5 0.00036 7.8E-09 62.5 7.3 77 131-227 78-155 (245)
247 TIGR01444 fkbM_fam methyltrans 97.5 0.00042 9.2E-09 57.2 7.2 57 135-191 1-59 (143)
248 PF01739 CheR: CheR methyltran 97.4 0.00034 7.4E-09 61.6 6.7 107 133-277 32-177 (196)
249 PRK10611 chemotaxis methyltran 97.4 0.00054 1.2E-08 63.8 8.3 41 134-174 117-166 (287)
250 PF10354 DUF2431: Domain of un 97.4 0.0039 8.4E-08 53.4 12.6 143 140-310 4-161 (166)
251 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.4 0.0013 2.8E-08 60.2 9.7 158 131-326 55-256 (256)
252 KOG1098|consensus 97.3 0.00046 1E-08 69.0 6.9 123 130-291 42-171 (780)
253 KOG0024|consensus 97.3 0.0016 3.4E-08 60.9 9.2 109 126-276 163-274 (354)
254 PF04445 SAM_MT: Putative SAM- 97.2 0.0012 2.6E-08 59.4 7.8 88 121-226 62-161 (234)
255 COG1352 CheR Methylase of chem 97.2 0.0031 6.8E-08 58.1 10.5 123 133-275 97-241 (268)
256 PF05971 Methyltransf_10: Prot 97.2 0.0012 2.6E-08 61.7 7.4 147 133-295 103-274 (299)
257 PF00145 DNA_methylase: C-5 cy 97.2 0.00054 1.2E-08 64.3 5.3 78 135-234 2-79 (335)
258 KOG1709|consensus 97.2 0.004 8.7E-08 55.0 10.2 106 131-274 100-205 (271)
259 KOG1227|consensus 97.0 0.00045 9.7E-09 63.7 3.2 95 109-222 162-268 (351)
260 COG2384 Predicted SAM-dependen 97.0 0.027 5.9E-07 50.0 14.2 123 130-300 14-139 (226)
261 COG4262 Predicted spermidine s 97.0 0.0067 1.5E-07 57.6 10.8 162 105-301 256-433 (508)
262 COG1064 AdhP Zn-dependent alco 97.0 0.0052 1.1E-07 58.3 9.6 95 129-274 163-258 (339)
263 PF13679 Methyltransf_32: Meth 96.9 0.0029 6.4E-08 52.5 6.8 49 131-179 24-77 (141)
264 KOG3178|consensus 96.7 0.013 2.9E-07 55.4 10.1 103 126-276 167-276 (342)
265 COG0500 SmtA SAM-dependent met 96.7 0.022 4.7E-07 45.2 10.2 104 136-281 52-161 (257)
266 KOG3045|consensus 96.7 0.037 8E-07 50.4 12.1 84 133-276 181-265 (325)
267 KOG3115|consensus 96.6 0.0068 1.5E-07 53.1 6.8 137 133-301 61-206 (249)
268 KOG2078|consensus 96.5 0.0014 3.1E-08 63.0 2.3 63 130-193 247-312 (495)
269 PF03141 Methyltransf_29: Puta 96.5 0.0041 9E-08 61.3 5.5 101 135-279 120-223 (506)
270 TIGR00675 dcm DNA-methyltransf 96.5 0.009 1.9E-07 56.5 7.4 79 136-236 1-79 (315)
271 PF03059 NAS: Nicotianamine sy 96.4 0.019 4.1E-07 53.1 8.7 102 134-274 122-229 (276)
272 PRK11524 putative methyltransf 96.3 0.0095 2.1E-07 55.5 6.7 86 182-293 9-94 (284)
273 COG0270 Dcm Site-specific DNA 96.3 0.0073 1.6E-07 57.4 6.0 83 134-235 4-86 (328)
274 PRK11524 putative methyltransf 96.3 0.0082 1.8E-07 55.9 5.9 46 131-177 207-252 (284)
275 PF09243 Rsm22: Mitochondrial 96.2 0.021 4.5E-07 53.0 8.1 45 134-178 35-81 (274)
276 COG1063 Tdh Threonine dehydrog 96.2 0.048 1E-06 52.3 10.9 102 130-276 166-270 (350)
277 KOG1269|consensus 96.2 0.0079 1.7E-07 57.9 5.4 103 129-272 107-212 (364)
278 PRK01747 mnmC bifunctional tRN 96.1 0.046 9.9E-07 57.0 10.9 122 134-301 59-224 (662)
279 COG1568 Predicted methyltransf 96.1 0.021 4.5E-07 52.4 7.2 78 132-227 152-232 (354)
280 PF01555 N6_N4_Mtase: DNA meth 95.9 0.014 2.9E-07 51.6 5.4 43 130-173 189-231 (231)
281 KOG2782|consensus 95.7 0.0075 1.6E-07 53.4 2.8 97 124-231 35-133 (303)
282 PRK13699 putative methylase; P 95.6 0.027 5.9E-07 50.7 6.1 48 130-178 161-208 (227)
283 PRK09424 pntA NAD(P) transhydr 95.5 0.13 2.7E-06 51.9 10.9 48 130-181 162-210 (509)
284 PF07091 FmrO: Ribosomal RNA m 95.4 0.065 1.4E-06 48.7 7.6 62 131-192 104-166 (251)
285 PRK10458 DNA cytosine methylas 95.2 0.073 1.6E-06 53.0 8.1 99 133-234 88-187 (467)
286 PRK13699 putative methylase; P 95.1 0.034 7.3E-07 50.1 5.1 73 183-279 3-75 (227)
287 PHA01634 hypothetical protein 94.9 0.07 1.5E-06 43.4 5.7 49 132-180 28-76 (156)
288 PRK09880 L-idonate 5-dehydroge 94.9 0.24 5.2E-06 47.0 10.4 49 129-181 166-216 (343)
289 KOG3987|consensus 94.8 0.009 1.9E-07 52.5 0.4 92 134-274 114-206 (288)
290 KOG2940|consensus 94.8 0.033 7.1E-07 49.9 3.8 112 122-274 61-173 (325)
291 PRK10309 galactitol-1-phosphat 94.7 0.19 4.2E-06 47.6 9.2 50 128-181 156-207 (347)
292 cd08283 FDH_like_1 Glutathione 94.6 0.15 3.3E-06 49.3 8.4 48 127-174 179-228 (386)
293 KOG1562|consensus 94.6 0.16 3.5E-06 47.1 8.0 121 133-293 122-248 (337)
294 TIGR02822 adh_fam_2 zinc-bindi 94.4 0.57 1.2E-05 44.3 11.7 50 128-181 161-211 (329)
295 PF00107 ADH_zinc_N: Zinc-bind 94.3 0.18 4E-06 40.4 6.9 91 142-277 1-91 (130)
296 TIGR03366 HpnZ_proposed putati 94.2 0.28 6E-06 45.2 8.9 48 128-181 116-167 (280)
297 PF10237 N6-adenineMlase: Prob 94.2 0.44 9.6E-06 40.6 9.4 124 119-291 11-135 (162)
298 cd08281 liver_ADH_like1 Zinc-d 94.2 0.22 4.7E-06 47.9 8.5 50 128-181 187-238 (371)
299 KOG1501|consensus 94.2 0.1 2.3E-06 50.8 5.9 54 135-188 69-124 (636)
300 TIGR03451 mycoS_dep_FDH mycoth 94.1 0.27 5.9E-06 46.9 8.8 50 128-181 172-223 (358)
301 cd08230 glucose_DH Glucose deh 94.0 0.34 7.4E-06 46.1 9.4 48 130-181 170-221 (355)
302 cd08254 hydroxyacyl_CoA_DH 6-h 93.9 0.34 7.3E-06 45.2 9.0 45 129-173 162-207 (338)
303 PRK08213 gluconate 5-dehydroge 93.9 0.66 1.4E-05 41.8 10.7 61 132-193 11-74 (259)
304 TIGR03201 dearomat_had 6-hydro 93.6 0.81 1.8E-05 43.4 11.1 50 128-181 162-212 (349)
305 cd08239 THR_DH_like L-threonin 93.5 0.34 7.4E-06 45.6 8.3 49 127-181 158-210 (339)
306 TIGR02825 B4_12hDH leukotriene 93.3 0.46 9.9E-06 44.5 8.8 50 128-181 134-185 (325)
307 PRK12939 short chain dehydroge 93.2 1 2.3E-05 39.9 10.7 61 132-193 6-69 (250)
308 COG2933 Predicted SAM-dependen 93.2 0.25 5.4E-06 45.2 6.2 71 130-225 209-279 (358)
309 KOG1331|consensus 92.9 0.14 3.1E-06 47.2 4.4 97 132-274 45-143 (293)
310 PRK07576 short chain dehydroge 92.9 1.4 3.1E-05 40.0 11.1 61 132-193 8-71 (264)
311 PRK07523 gluconate 5-dehydroge 92.9 1.5 3.2E-05 39.4 11.1 61 132-193 9-72 (255)
312 PRK07666 fabG 3-ketoacyl-(acyl 92.8 1.8 3.8E-05 38.4 11.4 60 133-193 7-69 (239)
313 COG4798 Predicted methyltransf 92.6 0.58 1.3E-05 41.0 7.5 39 127-165 43-83 (238)
314 COG5459 Predicted rRNA methyla 92.6 0.11 2.3E-06 49.4 3.2 36 134-169 115-152 (484)
315 PF07942 N2227: N2227-like pro 92.6 0.91 2E-05 41.9 9.3 44 132-176 56-99 (270)
316 KOG2352|consensus 92.5 0.98 2.1E-05 44.8 9.9 114 130-276 45-162 (482)
317 PRK06139 short chain dehydroge 92.5 1.2 2.6E-05 42.3 10.5 61 132-193 6-69 (330)
318 COG3129 Predicted SAM-dependen 92.4 0.26 5.7E-06 44.3 5.3 85 131-229 77-166 (292)
319 PRK08085 gluconate 5-dehydroge 92.4 1.9 4.2E-05 38.6 11.3 60 133-193 9-71 (254)
320 PF03721 UDPG_MGDP_dh_N: UDP-g 92.3 0.51 1.1E-05 41.1 7.0 78 216-309 76-157 (185)
321 PLN03154 putative allyl alcoho 92.3 0.78 1.7E-05 43.7 8.9 51 128-181 154-206 (348)
322 PRK07109 short chain dehydroge 92.2 2.4 5.2E-05 40.2 12.2 61 132-193 7-70 (334)
323 PLN02740 Alcohol dehydrogenase 92.2 0.93 2E-05 43.7 9.5 48 128-181 194-245 (381)
324 PRK12429 3-hydroxybutyrate deh 92.1 1.7 3.7E-05 38.8 10.5 60 133-193 4-66 (258)
325 PRK05867 short chain dehydroge 92.0 1.3 2.8E-05 39.7 9.6 61 132-193 8-71 (253)
326 cd00401 AdoHcyase S-adenosyl-L 91.9 1.1 2.3E-05 44.1 9.5 43 131-173 200-243 (413)
327 cd08294 leukotriene_B4_DH_like 91.8 0.99 2.1E-05 42.0 8.9 51 127-181 138-190 (329)
328 KOG3201|consensus 91.7 0.2 4.4E-06 42.5 3.6 103 133-273 30-138 (201)
329 cd05285 sorbitol_DH Sorbitol d 91.6 1.1 2.3E-05 42.4 9.0 48 126-173 156-205 (343)
330 PRK07774 short chain dehydroge 91.6 2.4 5.1E-05 37.7 10.8 61 132-193 5-68 (250)
331 PRK12937 short chain dehydroge 91.4 2.5 5.5E-05 37.4 10.8 131 132-278 4-142 (245)
332 COG0677 WecC UDP-N-acetyl-D-ma 91.4 2.3 5E-05 41.3 10.7 141 142-310 16-168 (436)
333 PRK07097 gluconate 5-dehydroge 91.3 3.4 7.3E-05 37.3 11.6 61 132-193 9-72 (265)
334 cd08293 PTGR2 Prostaglandin re 91.2 1.4 2.9E-05 41.5 9.2 50 129-181 149-203 (345)
335 PRK06949 short chain dehydroge 91.1 2 4.3E-05 38.4 9.8 60 132-192 8-70 (258)
336 PF07669 Eco57I: Eco57I restri 91.0 0.59 1.3E-05 36.8 5.4 85 216-310 2-91 (106)
337 PRK07890 short chain dehydroge 90.9 3.8 8.2E-05 36.6 11.5 61 132-193 4-67 (258)
338 PRK05876 short chain dehydroge 90.8 2.6 5.6E-05 38.6 10.5 60 133-193 6-68 (275)
339 PRK06124 gluconate 5-dehydroge 90.8 3.8 8.3E-05 36.6 11.4 61 132-193 10-73 (256)
340 PF11968 DUF3321: Putative met 90.7 0.52 1.1E-05 42.0 5.3 132 119-301 30-178 (219)
341 cd08237 ribitol-5-phosphate_DH 90.6 1.5 3.3E-05 41.5 8.9 45 129-173 160-207 (341)
342 PRK07063 short chain dehydroge 90.6 3.1 6.8E-05 37.3 10.7 60 133-193 7-71 (260)
343 PRK13394 3-hydroxybutyrate deh 90.5 2.8 6E-05 37.5 10.3 60 133-193 7-69 (262)
344 PRK09242 tropinone reductase; 90.5 3.7 8E-05 36.8 11.0 130 132-277 8-148 (257)
345 PRK06172 short chain dehydroge 90.4 3.6 7.7E-05 36.7 10.8 60 133-193 7-69 (253)
346 PRK06181 short chain dehydroge 90.4 4 8.7E-05 36.6 11.2 58 135-193 3-63 (263)
347 PRK07814 short chain dehydroge 90.2 4 8.6E-05 36.9 11.1 61 132-193 9-72 (263)
348 PF07279 DUF1442: Protein of u 90.2 2.5 5.4E-05 37.6 9.1 74 134-224 43-123 (218)
349 cd08295 double_bond_reductase_ 90.2 1.8 3.9E-05 40.7 9.0 51 128-181 147-199 (338)
350 PF04672 Methyltransf_19: S-ad 90.2 3 6.6E-05 38.4 10.0 118 134-277 70-192 (267)
351 TIGR02415 23BDH acetoin reduct 90.1 2.2 4.9E-05 38.0 9.3 57 136-193 3-62 (254)
352 PRK08594 enoyl-(acyl carrier p 89.9 2.9 6.2E-05 37.9 9.9 133 132-275 6-147 (257)
353 cd05188 MDR Medium chain reduc 89.9 1.6 3.4E-05 38.9 8.1 43 130-172 132-175 (271)
354 PRK07326 short chain dehydroge 89.9 3.6 7.8E-05 36.2 10.3 58 133-192 6-66 (237)
355 cd08255 2-desacetyl-2-hydroxye 89.8 3.1 6.7E-05 37.7 10.1 47 127-173 92-140 (277)
356 PRK08324 short chain dehydroge 89.8 2.4 5.2E-05 44.4 10.3 132 132-276 421-558 (681)
357 PLN02827 Alcohol dehydrogenase 89.7 1.5 3.2E-05 42.4 8.1 48 128-181 189-240 (378)
358 PRK06701 short chain dehydroge 89.6 3.2 6.9E-05 38.4 10.1 130 132-276 45-182 (290)
359 cd08232 idonate-5-DH L-idonate 89.6 2.2 4.7E-05 40.0 9.1 43 130-172 163-207 (339)
360 KOG2651|consensus 89.6 0.95 2.1E-05 43.6 6.4 49 121-169 142-190 (476)
361 PRK07533 enoyl-(acyl carrier p 89.5 4.5 9.7E-05 36.5 10.8 131 132-274 9-147 (258)
362 PF01555 N6_N4_Mtase: DNA meth 89.2 0.34 7.4E-06 42.5 3.1 78 217-299 1-78 (231)
363 cd08236 sugar_DH NAD(P)-depend 89.2 2.3 5.1E-05 39.8 9.0 46 127-172 154-201 (343)
364 PRK06194 hypothetical protein; 89.0 5 0.00011 36.6 10.9 60 133-193 6-68 (287)
365 COG4301 Uncharacterized conser 89.0 4 8.6E-05 37.3 9.5 122 125-281 71-199 (321)
366 PRK07806 short chain dehydroge 88.9 8.1 0.00018 34.2 12.0 125 133-275 6-134 (248)
367 PF05430 Methyltransf_30: S-ad 88.9 0.29 6.2E-06 39.8 2.2 61 215-302 49-109 (124)
368 PRK07677 short chain dehydroge 88.9 4.6 0.0001 36.1 10.4 59 134-193 2-63 (252)
369 TIGR01202 bchC 2-desacetyl-2-h 88.9 2.1 4.6E-05 39.9 8.4 42 131-172 143-186 (308)
370 PRK07454 short chain dehydroge 88.8 4.6 9.9E-05 35.7 10.2 60 133-193 6-68 (241)
371 TIGR03206 benzo_BadH 2-hydroxy 88.8 5 0.00011 35.5 10.5 60 133-193 3-65 (250)
372 TIGR02819 fdhA_non_GSH formald 88.8 3.5 7.7E-05 40.1 10.1 50 128-181 181-232 (393)
373 PRK06940 short chain dehydroge 88.8 6.8 0.00015 35.8 11.5 57 135-193 4-62 (275)
374 PRK09072 short chain dehydroge 88.7 5.3 0.00012 35.9 10.7 59 133-193 5-66 (263)
375 PLN02586 probable cinnamyl alc 88.6 3.5 7.6E-05 39.4 9.8 49 130-181 181-230 (360)
376 PRK12826 3-ketoacyl-(acyl-carr 88.5 7.1 0.00015 34.5 11.3 60 133-193 6-68 (251)
377 cd08238 sorbose_phosphate_red 88.5 3.9 8.4E-05 39.9 10.2 46 129-174 172-222 (410)
378 cd08278 benzyl_alcohol_DH Benz 88.4 2.6 5.6E-05 40.3 8.8 45 128-172 182-228 (365)
379 PRK07062 short chain dehydroge 88.3 6.3 0.00014 35.4 10.9 61 132-193 7-72 (265)
380 PRK06113 7-alpha-hydroxysteroi 88.2 6.9 0.00015 35.0 11.1 60 133-193 11-73 (255)
381 PRK08217 fabG 3-ketoacyl-(acyl 88.2 8.6 0.00019 34.0 11.6 60 132-192 4-66 (253)
382 TIGR01963 PHB_DH 3-hydroxybuty 88.1 8.4 0.00018 34.1 11.5 58 135-193 3-63 (255)
383 PRK05855 short chain dehydroge 87.9 4.6 9.9E-05 40.7 10.7 60 133-193 315-377 (582)
384 PF11899 DUF3419: Protein of u 87.9 1.4 2.9E-05 42.9 6.4 57 119-176 22-78 (380)
385 PRK06500 short chain dehydroge 87.8 7.1 0.00015 34.5 10.8 125 133-276 6-137 (249)
386 PRK07831 short chain dehydroge 87.8 6.4 0.00014 35.4 10.6 62 132-193 16-82 (262)
387 PLN02514 cinnamyl-alcohol dehy 87.7 3.6 7.8E-05 39.2 9.3 49 130-181 178-227 (357)
388 PRK08415 enoyl-(acyl carrier p 87.7 7.4 0.00016 35.7 11.0 133 132-276 4-144 (274)
389 PRK08643 acetoin reductase; Va 87.6 8.6 0.00019 34.3 11.3 60 133-193 2-64 (256)
390 PRK08339 short chain dehydroge 87.6 7.1 0.00015 35.4 10.8 61 132-193 7-71 (263)
391 KOG0023|consensus 87.5 2.9 6.3E-05 39.5 8.0 50 130-182 179-229 (360)
392 PRK08267 short chain dehydroge 87.4 3.8 8.2E-05 36.8 8.9 56 135-193 3-61 (260)
393 cd08300 alcohol_DH_class_III c 87.4 4.3 9.3E-05 38.8 9.7 48 128-181 182-233 (368)
394 PRK06198 short chain dehydroge 87.4 4.5 9.7E-05 36.2 9.3 61 132-193 5-69 (260)
395 PRK06914 short chain dehydroge 87.4 6.1 0.00013 35.8 10.3 60 133-193 3-67 (280)
396 PRK05786 fabG 3-ketoacyl-(acyl 87.4 6.3 0.00014 34.6 10.1 59 133-193 5-66 (238)
397 PRK06128 oxidoreductase; Provi 87.3 11 0.00023 34.9 12.0 128 132-275 54-191 (300)
398 PRK09291 short chain dehydroge 87.2 7.4 0.00016 34.7 10.6 77 134-225 3-82 (257)
399 PRK08251 short chain dehydroge 87.0 9.3 0.0002 33.8 11.1 60 133-193 2-66 (248)
400 PLN02178 cinnamyl-alcohol dehy 87.0 3.5 7.7E-05 39.7 8.8 47 131-181 177-225 (375)
401 PRK09186 flagellin modificatio 86.9 5.1 0.00011 35.7 9.3 60 133-193 4-68 (256)
402 PRK05565 fabG 3-ketoacyl-(acyl 86.8 8.1 0.00018 34.0 10.6 60 133-193 5-68 (247)
403 PRK08063 enoyl-(acyl carrier p 86.8 9.8 0.00021 33.7 11.1 60 133-193 4-67 (250)
404 PRK07231 fabG 3-ketoacyl-(acyl 86.8 8 0.00017 34.2 10.5 59 133-193 5-66 (251)
405 PRK05653 fabG 3-ketoacyl-(acyl 86.7 9.4 0.0002 33.4 10.9 60 133-193 5-67 (246)
406 cd08285 NADP_ADH NADP(H)-depen 86.6 4.8 0.0001 38.0 9.4 50 128-181 162-213 (351)
407 PRK08303 short chain dehydroge 86.5 18 0.00039 33.8 13.1 61 132-193 7-80 (305)
408 PF00106 adh_short: short chai 86.5 9.3 0.0002 31.5 10.2 122 136-275 3-134 (167)
409 PRK12746 short chain dehydroge 86.4 11 0.00024 33.5 11.3 133 133-276 6-147 (254)
410 cd08277 liver_alcohol_DH_like 86.2 5.4 0.00012 38.1 9.6 48 128-181 180-231 (365)
411 PRK05866 short chain dehydroge 86.2 9.8 0.00021 35.2 11.1 60 133-193 40-102 (293)
412 PRK12747 short chain dehydroge 86.2 9.9 0.00021 33.8 10.8 132 133-275 4-144 (252)
413 PRK12829 short chain dehydroge 86.2 10 0.00022 33.8 11.0 63 128-193 6-71 (264)
414 COG3510 CmcI Cephalosporin hyd 86.0 7.5 0.00016 34.2 9.2 74 114-193 50-131 (237)
415 COG2961 ComJ Protein involved 86.0 24 0.00052 32.3 12.7 124 130-294 87-210 (279)
416 PRK06603 enoyl-(acyl carrier p 86.0 12 0.00025 33.9 11.3 133 132-276 7-147 (260)
417 PRK05650 short chain dehydroge 85.9 6.8 0.00015 35.4 9.7 58 135-193 2-62 (270)
418 COG0604 Qor NADPH:quinone redu 85.8 4.7 0.0001 38.3 8.8 101 129-277 139-243 (326)
419 PRK12744 short chain dehydroge 85.6 8.8 0.00019 34.3 10.3 129 133-277 8-147 (257)
420 PRK07889 enoyl-(acyl carrier p 85.6 12 0.00027 33.6 11.2 129 132-275 6-145 (256)
421 PRK07478 short chain dehydroge 85.6 13 0.00029 33.1 11.4 60 133-193 6-68 (254)
422 PRK07985 oxidoreductase; Provi 85.5 15 0.00033 33.8 12.0 129 132-275 48-185 (294)
423 PRK06077 fabG 3-ketoacyl-(acyl 85.5 7.3 0.00016 34.5 9.6 129 133-277 6-142 (252)
424 PRK05872 short chain dehydroge 85.5 6.5 0.00014 36.3 9.5 60 132-193 8-70 (296)
425 PRK07102 short chain dehydroge 85.4 9.5 0.00021 33.8 10.3 58 135-193 3-64 (243)
426 PRK06505 enoyl-(acyl carrier p 85.3 11 0.00024 34.3 10.9 130 132-276 6-146 (271)
427 PRK08278 short chain dehydroge 85.3 8 0.00017 35.2 9.9 130 132-277 5-150 (273)
428 PRK06196 oxidoreductase; Provi 85.3 13 0.00027 34.7 11.4 82 132-226 25-109 (315)
429 cd08261 Zn_ADH7 Alcohol dehydr 85.1 6.1 0.00013 37.0 9.3 46 127-172 154-200 (337)
430 PRK06935 2-deoxy-D-gluconate 3 85.0 8.7 0.00019 34.4 9.9 60 132-193 14-76 (258)
431 KOG4174|consensus 85.0 24 0.00053 32.3 12.3 144 132-299 56-212 (282)
432 cd08296 CAD_like Cinnamyl alco 85.0 6.3 0.00014 36.9 9.3 43 128-172 159-204 (333)
433 KOG4058|consensus 84.9 1.7 3.8E-05 36.4 4.6 63 131-193 71-135 (199)
434 PRK08265 short chain dehydroge 84.8 13 0.00027 33.5 10.9 57 133-193 6-65 (261)
435 PRK08945 putative oxoacyl-(acy 84.8 12 0.00026 33.2 10.7 60 130-190 9-72 (247)
436 TIGR01832 kduD 2-deoxy-D-gluco 84.8 7.5 0.00016 34.4 9.3 59 132-193 4-65 (248)
437 PRK06138 short chain dehydroge 84.5 12 0.00027 33.0 10.6 59 133-193 5-66 (252)
438 PRK08589 short chain dehydroge 84.5 11 0.00025 34.1 10.5 60 132-193 5-67 (272)
439 PRK08159 enoyl-(acyl carrier p 84.1 16 0.00036 33.2 11.5 133 132-276 9-149 (272)
440 KOG3673|consensus 84.1 3.8 8.2E-05 41.2 7.3 45 215-272 351-397 (845)
441 cd05278 FDH_like Formaldehyde 84.0 5.4 0.00012 37.4 8.4 45 129-173 164-210 (347)
442 COG0863 DNA modification methy 84.0 2.4 5.2E-05 39.1 5.9 49 130-179 220-268 (302)
443 PLN03209 translocon at the inn 83.9 19 0.00041 37.0 12.5 64 129-193 76-151 (576)
444 PRK12743 oxidoreductase; Provi 83.8 15 0.00032 32.9 10.9 60 133-193 2-65 (256)
445 cd08245 CAD Cinnamyl alcohol d 83.7 15 0.00032 34.1 11.2 44 128-171 158-202 (330)
446 PRK08703 short chain dehydroge 83.6 16 0.00036 32.1 11.0 59 132-191 5-67 (239)
447 cd08242 MDR_like Medium chain 83.5 11 0.00023 35.0 10.1 48 128-181 151-201 (319)
448 cd08234 threonine_DH_like L-th 83.4 13 0.00028 34.5 10.7 45 127-171 154-200 (334)
449 PRK06079 enoyl-(acyl carrier p 83.4 6.3 0.00014 35.4 8.3 130 132-276 6-144 (252)
450 PRK07832 short chain dehydroge 83.4 12 0.00026 33.9 10.2 57 136-193 3-63 (272)
451 KOG2793|consensus 83.4 4.4 9.6E-05 37.0 7.1 54 123-177 76-130 (248)
452 PRK12859 3-ketoacyl-(acyl-carr 83.3 19 0.0004 32.3 11.3 87 132-227 5-107 (256)
453 KOG0822|consensus 83.2 1.7 3.8E-05 43.5 4.7 101 135-273 370-476 (649)
454 PRK07984 enoyl-(acyl carrier p 83.1 18 0.0004 32.8 11.3 61 132-193 5-69 (262)
455 PRK08862 short chain dehydroge 83.0 8 0.00017 34.3 8.7 60 132-192 4-66 (227)
456 PRK07067 sorbitol dehydrogenas 83.0 16 0.00034 32.6 10.7 57 133-193 6-65 (257)
457 KOG1201|consensus 83.0 30 0.00066 32.4 12.4 124 132-274 37-171 (300)
458 PRK06125 short chain dehydroge 82.9 15 0.00032 32.9 10.5 60 133-193 7-70 (259)
459 PRK12481 2-deoxy-D-gluconate 3 82.9 7.3 0.00016 34.9 8.5 59 132-193 7-68 (251)
460 PF05711 TylF: Macrocin-O-meth 82.8 3.7 8E-05 37.5 6.4 120 132-294 75-229 (248)
461 PRK05717 oxidoreductase; Valid 82.8 15 0.00034 32.7 10.6 57 133-193 10-69 (255)
462 PRK06197 short chain dehydroge 82.7 27 0.00058 32.3 12.4 61 132-193 15-80 (306)
463 PRK07792 fabG 3-ketoacyl-(acyl 82.7 11 0.00023 35.1 9.7 60 133-193 12-75 (306)
464 cd08231 MDR_TM0436_like Hypoth 82.6 10 0.00022 36.0 9.7 45 131-181 176-224 (361)
465 PRK08277 D-mannonate oxidoredu 82.3 33 0.00071 31.0 12.7 60 133-193 10-72 (278)
466 PRK08628 short chain dehydroge 81.7 19 0.00042 32.0 10.8 59 133-193 7-68 (258)
467 PRK06114 short chain dehydroge 81.7 16 0.00034 32.6 10.2 60 133-193 8-71 (254)
468 COG0300 DltE Short-chain dehyd 81.3 21 0.00045 33.0 10.7 62 131-193 4-69 (265)
469 PF03492 Methyltransf_7: SAM d 81.3 12 0.00025 35.8 9.5 19 134-152 18-36 (334)
470 PRK12935 acetoacetyl-CoA reduc 81.3 25 0.00053 31.0 11.2 60 133-193 6-69 (247)
471 PRK05993 short chain dehydroge 81.3 12 0.00025 34.1 9.3 53 133-192 4-59 (277)
472 PRK08263 short chain dehydroge 81.2 16 0.00035 33.1 10.2 57 133-193 3-62 (275)
473 PLN02780 ketoreductase/ oxidor 81.0 33 0.00071 32.2 12.4 58 132-190 52-114 (320)
474 cd08233 butanediol_DH_like (2R 80.6 14 0.0003 34.8 9.8 46 127-172 167-214 (351)
475 PRK12748 3-ketoacyl-(acyl-carr 80.4 25 0.00055 31.3 11.1 60 133-193 5-80 (256)
476 cd08243 quinone_oxidoreductase 80.4 14 0.00031 33.7 9.6 49 129-181 139-189 (320)
477 PRK08993 2-deoxy-D-gluconate 3 80.3 18 0.00039 32.3 10.1 57 133-192 10-69 (253)
478 PRK07370 enoyl-(acyl carrier p 80.0 11 0.00025 33.9 8.7 62 132-193 5-72 (258)
479 PRK09590 celB cellobiose phosp 79.9 4.4 9.4E-05 31.9 5.1 55 135-223 3-57 (104)
480 PLN02896 cinnamyl-alcohol dehy 79.8 22 0.00048 33.6 10.9 79 133-228 10-91 (353)
481 PRK08340 glucose-1-dehydrogena 79.5 45 0.00099 29.7 12.9 57 135-193 2-61 (259)
482 PRK08226 short chain dehydroge 79.3 27 0.00059 31.1 11.0 60 132-193 5-67 (263)
483 PRK12384 sorbitol-6-phosphate 79.3 22 0.00049 31.6 10.4 60 133-193 2-66 (259)
484 cd08292 ETR_like_2 2-enoyl thi 79.2 14 0.0003 34.0 9.2 45 128-172 135-181 (324)
485 cd08291 ETR_like_1 2-enoyl thi 79.1 14 0.00031 34.3 9.3 46 132-181 142-190 (324)
486 PRK05875 short chain dehydroge 79.1 21 0.00045 32.2 10.2 60 133-193 7-71 (276)
487 PRK07041 short chain dehydroge 78.8 19 0.0004 31.4 9.5 52 141-193 4-58 (230)
488 PRK06997 enoyl-(acyl carrier p 78.5 19 0.0004 32.6 9.6 133 132-275 5-145 (260)
489 PRK05599 hypothetical protein; 78.3 26 0.00056 31.2 10.4 58 135-193 2-62 (246)
490 cd05281 TDH Threonine dehydrog 78.2 12 0.00026 35.1 8.5 43 130-172 161-205 (341)
491 PLN02702 L-idonate 5-dehydroge 78.2 19 0.00042 34.1 10.1 50 128-181 177-228 (364)
492 KOG2352|consensus 77.8 8.5 0.00018 38.3 7.4 135 133-291 296-432 (482)
493 PF03141 Methyltransf_29: Puta 77.7 2.9 6.4E-05 41.7 4.2 18 135-152 368-385 (506)
494 PRK10083 putative oxidoreducta 77.6 22 0.00048 33.1 10.1 49 127-181 155-208 (339)
495 cd08274 MDR9 Medium chain dehy 77.4 12 0.00025 35.1 8.2 48 129-181 174-223 (350)
496 KOG0821|consensus 77.4 5.1 0.00011 36.0 5.2 63 131-193 49-111 (326)
497 PRK07453 protochlorophyllide o 76.9 30 0.00064 32.2 10.8 61 132-193 5-68 (322)
498 PRK06057 short chain dehydroge 76.8 40 0.00086 30.0 11.2 56 132-193 6-64 (255)
499 PRK06484 short chain dehydroge 76.8 22 0.00048 35.6 10.4 126 132-276 268-401 (520)
500 TIGR03026 NDP-sugDHase nucleot 76.6 36 0.00078 33.3 11.6 34 259-293 104-137 (411)
No 1
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-70 Score=522.11 Aligned_cols=307 Identities=33% Similarity=0.562 Sum_probs=272.2
Q ss_pred CeeeecchhhhcccccccccccCCchhhcCCcHHHHHHHHHhCCChHHHHHHHHHhCCCCCeeEEEcCCCCCHHHHHHHH
Q psy15212 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPPLTLRINQRKTTLISYNKLL 80 (329)
Q Consensus 1 ~vNavlr~~~~~~~~~~~~~~~~~~~~~~s~P~w~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~RvN~~k~~~~~~~~~l 80 (329)
|||++||++.|.......... .....|++|.|++++|.+.||. ++++++++++++++|.++|||+++.+++++.+.|
T Consensus 26 ~~n~~lr~~~r~~~~~~~~~~--~~~~~~~~p~w~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~Rvn~lk~~~~~~~~~l 102 (355)
T COG0144 26 FVNAVLRRLERSEEALLEEIL--RPAFRYSHPEWLVEKLPDALGE-DEAEAIAAALLRPPPRSLRVNTLKADVEELLEAL 102 (355)
T ss_pred hhhhhHhhhhhccchhhhhhh--cccccccCcHHHHHHHHHHcCh-HHHHHHHHHcCCCCCeeEEEcCccCCHHHHHHHH
Confidence 689999999987655443332 1116799999999999999998 5699999999999999999999999999999999
Q ss_pred HHCCCeeEE--eCCceEEEcCCCCCCCCcccccceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC---
Q psy15212 81 KKSGLETTI--IGPLAIKLHTPISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--- 155 (329)
Q Consensus 81 ~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--- 155 (329)
.+.++...+ +.+.++.+....++..+++|.+|++++||.+||+++.+|+|+||++|||+||||||||+|+|+++.
T Consensus 103 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~ 182 (355)
T COG0144 103 EEAGVLDEKPWVLDEVLRIEASGPIGRLPEFAEGLIYVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEG 182 (355)
T ss_pred hhcccccccCCccccEEEecCCCCcccChhhhceEEEEcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCC
Confidence 998776544 345678888888899999999999999999999999999999999999999999999999999987
Q ss_pred CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCcccccccc
Q psy15212 156 IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRR 234 (329)
Q Consensus 156 ~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~ 234 (329)
..|+|+|++++|++.+++|++|+|+. +.+++.|++.+.. .+....+||+||+||||||+|++||
T Consensus 183 ~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~---------------~~~~~~~fD~iLlDaPCSg~G~irr 247 (355)
T COG0144 183 AIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAE---------------LLPGGEKFDRILLDAPCSGTGVIRR 247 (355)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccc---------------cccccCcCcEEEECCCCCCCccccc
Confidence 35699999999999999999999998 7888899876540 1112236999999999999999999
Q ss_pred CCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHHHHHhhCCCcEEecCC-----------
Q psy15212 235 NPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSP----------- 303 (329)
Q Consensus 235 ~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~~~~~~~~~~~----------- 303 (329)
||+++|.++++++..++.+|.+||++|+++|||||+|||||||++++|||+||++||++++++++++..
T Consensus 248 ~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~~~~~~~~~~~~~~~~~~~~~~ 327 (355)
T COG0144 248 DPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLERHPDFELEPVRLPWGPLFEGLG 327 (355)
T ss_pred CccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHHHHHHHhCCCceeecccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999998877642
Q ss_pred ------CcccCCCCCCCCCCeEEEEEEEecC
Q psy15212 304 ------GQLLPTVNKKQDYDGFFYSLFQKRK 328 (329)
Q Consensus 304 ------~~~~p~~~~~~~~~gff~a~l~k~~ 328 (329)
.+++|+. +++||||+|+|+|..
T Consensus 328 ~~~~~~~r~~p~~---~~~dGFFia~l~k~~ 355 (355)
T COG0144 328 SELGKTRRLYPHV---HGTDGFFIAKLRKKR 355 (355)
T ss_pred cccCCeEEECCCC---CCCCCeEEEEEEeCC
Confidence 2567887 778999999999963
No 2
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=3.1e-67 Score=514.35 Aligned_cols=308 Identities=33% Similarity=0.541 Sum_probs=274.6
Q ss_pred Ceeeecchhhhcccccc----cccccCCchhhcCCcHHHHHHHHHhCCChHHHHHHHHHhCCCCCeeEEEcCCCCCHHHH
Q psy15212 1 MINAILREFLRKKGEIF----KSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPPLTLRINQRKTTLISY 76 (329)
Q Consensus 1 ~vNavlr~~~~~~~~~~----~~~~~~~~~~~~s~P~w~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~RvN~~k~~~~~~ 76 (329)
|||||||++.|+.+... .......++++||+|.||+++|.+.||. ++++++++++++++|+++|||++|++++++
T Consensus 115 fVNgVLr~~~r~~~~~~~~~~~~~~~~~l~~~~s~P~wl~~~~~~~~g~-~~~~~~~~~~~~~~~~~~Rvn~~k~~~~~~ 193 (434)
T PRK14901 115 VVNGILRQYLRAREAGDPLPLPEDPIERLAILHSFPDWLVKLWLEWLGL-EEAEQLCKWFNQPPSLDLRINPLRTSLEEV 193 (434)
T ss_pred hcCHHHHHHHHhhhccccccCCcChHHHHHHHhCCcHHHHHHHHHHhCH-HHHHHHHHHhCCCCCeEEEECCCCCCHHHH
Confidence 79999999999744211 1111134788999999999999999997 788999999999999999999999999999
Q ss_pred HHHHHHCCCeeEE--eCCceEEEcCC-CCCCCCcccccceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHh
Q psy15212 77 NKLLKKSGLETTI--IGPLAIKLHTP-ISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEI 153 (329)
Q Consensus 77 ~~~l~~~g~~~~~--~~~~~~~~~~~-~~~~~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~ 153 (329)
.+.|+++|+..++ +.++++.+... ..+..+++|.+|.+++||++|++++.++++++|++|||+|||||+||++++++
T Consensus 194 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~g~~~~qd~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~ 273 (434)
T PRK14901 194 QAALAEAGITATPIPGLPQGLRLTGNPGSIRQLPGYEEGWWTVQDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAEL 273 (434)
T ss_pred HHHHHHCCCceEECCCCCCeEEecCCCCccccChHHhCCeEEEECHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHH
Confidence 9999999998766 45788888753 35888999999999999999999999999999999999999999999999998
Q ss_pred CC--CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhcccccccccc--cCCCCCCEEEEccCCcc
Q psy15212 154 AD--IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNRFRF--YKNKYFDRILADLPCTG 228 (329)
Q Consensus 154 ~~--~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fD~Vl~D~PCsg 228 (329)
++ ++|+|+|+++.|++.+++|++++|+. ++++++|+.... .. ...+.||+|++||||||
T Consensus 274 ~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~----------------~~~~~~~~~fD~Vl~DaPCSg 337 (434)
T PRK14901 274 MGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLL----------------ELKPQWRGYFDRILLDAPCSG 337 (434)
T ss_pred hCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcc----------------cccccccccCCEEEEeCCCCc
Confidence 75 79999999999999999999999997 899999988653 10 12357999999999999
Q ss_pred ccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHHHHHhhCCCcEEecCCCcccC
Q psy15212 229 SGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLP 308 (329)
Q Consensus 229 ~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~~~~~~~~~~~~~~~p 308 (329)
+|+++++|+++|.++++++..+..+|.++|.+|+++|||||+|||||||++++|||++|.+|+++||++++.+....++|
T Consensus 338 ~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~~~~~~~~~~~~~P 417 (434)
T PRK14901 338 LGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHPDWKLEPPKQKIWP 417 (434)
T ss_pred ccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCCCcEecCCCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987653322899
Q ss_pred CCCCCCCCCeEEEEEEEecC
Q psy15212 309 TVNKKQDYDGFFYSLFQKRK 328 (329)
Q Consensus 309 ~~~~~~~~~gff~a~l~k~~ 328 (329)
+. +++||||+|+|+|.+
T Consensus 418 ~~---~~~dGfF~a~l~k~~ 434 (434)
T PRK14901 418 HR---QDGDGFFMAVLRKKS 434 (434)
T ss_pred CC---CCCCcEEEEEEEeCC
Confidence 98 899999999999974
No 3
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=9.5e-67 Score=509.26 Aligned_cols=299 Identities=27% Similarity=0.497 Sum_probs=270.1
Q ss_pred CeeeecchhhhcccccccccccCCchhhcCCcHHHHHHHHHhCCChHHHHHHHHHhCCCCCeeEEEcCCCCCHHHHHHHH
Q psy15212 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPPLTLRINQRKTTLISYNKLL 80 (329)
Q Consensus 1 ~vNavlr~~~~~~~~~~~~~~~~~~~~~~s~P~w~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~RvN~~k~~~~~~~~~l 80 (329)
|||||||++.|+.+ +.+++++||+|.||+++|.+.||. ++++++++++++++|+++|||++|++++++.+.|
T Consensus 111 fVNaVLr~~~r~~~-------~~~l~~~~s~P~wl~~~~~~~~g~-~~~~~~~~~~~~~~~~~~RvN~~k~~~~~~~~~l 182 (431)
T PRK14903 111 LVNAVLRRLRTVPE-------PKELHLKYSHPKWLVNYWRSFLPE-EAVLRIMEWNQEPLPTMLRVNSLAITREEVIKIL 182 (431)
T ss_pred HHHHHHHHHHHhhc-------chhhhhhhcCcHHHHHHHHHHcCH-HHHHHHHHHhcCCCCeeEEeeCCcCCHHHHHHHH
Confidence 79999999998621 135788999999999999999997 7899999999999999999999999999999999
Q ss_pred HHCCCeeEE--eCCceEEEcC-CCCCCCCcccccceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--
Q psy15212 81 KKSGLETTI--IGPLAIKLHT-PISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-- 155 (329)
Q Consensus 81 ~~~g~~~~~--~~~~~~~~~~-~~~~~~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-- 155 (329)
+.+|+..++ +.++++.+.. ..++..+++|++|.+++||.+|++++.++++++|++|||+|||||+||++++++++
T Consensus 183 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~ 262 (431)
T PRK14903 183 AEEGTEAVPGKHSPFSLIVRKLGVNMNDSRVIKDGLATVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQ 262 (431)
T ss_pred HHCCCeeEECCCCCceEEEcCCCCCcccChHHHCCeEEEECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCC
Confidence 999988765 5578888875 45688899999999999999999999999999999999999999999999999874
Q ss_pred CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCcccccccc
Q psy15212 156 IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRR 234 (329)
Q Consensus 156 ~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~ 234 (329)
++|+|+|++++|++.+++|++++|+. ++++.+|+..+. .+ ..+.||+|++||||||+|++++
T Consensus 263 g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~----------------~~-~~~~fD~Vl~DaPCsg~G~~~~ 325 (431)
T PRK14903 263 GKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLT----------------EY-VQDTFDRILVDAPCTSLGTARN 325 (431)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhh----------------hh-hhccCCEEEECCCCCCCccccC
Confidence 79999999999999999999999997 789999988653 11 2467999999999999999999
Q ss_pred CCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHHHHHhhCCCcEEecCC-----------
Q psy15212 235 NPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSP----------- 303 (329)
Q Consensus 235 ~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~~~~~~~~~~~----------- 303 (329)
+|+++|.++++++..+...|.++|.+++++|||||+|||||||+.++|||++|++||++||++++++..
T Consensus 326 ~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~~~~~~~~~~~~~~~~~~~~~~ 405 (431)
T PRK14903 326 HPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVYEQKDAEVIDIRDKLEEFEVEGI 405 (431)
T ss_pred ChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHHhCCCcEEecccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999865532
Q ss_pred -----CcccCCCCCCCCCCeEEEEEEEecC
Q psy15212 304 -----GQLLPTVNKKQDYDGFFYSLFQKRK 328 (329)
Q Consensus 304 -----~~~~p~~~~~~~~~gff~a~l~k~~ 328 (329)
.+++|+ +.+||||+|+|+|.+
T Consensus 406 ~~~~~~~~~P~----~~~dGFf~a~L~k~~ 431 (431)
T PRK14903 406 WDGYGFLMLPD----ETLTPFYVSVLRKMG 431 (431)
T ss_pred cCCCcEEECcC----CCCCcEEEEEEEeCC
Confidence 145676 468999999999974
No 4
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=100.00 E-value=4.1e-66 Score=505.50 Aligned_cols=304 Identities=37% Similarity=0.698 Sum_probs=269.4
Q ss_pred CeeeecchhhhcccccccccccCCchhhcCCcHHHHHHHHHhCCChHHHHHHHHHhCCCCCeeEEEcCCCCCHHHHHHHH
Q psy15212 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPPLTLRINQRKTTLISYNKLL 80 (329)
Q Consensus 1 ~vNavlr~~~~~~~~~~~~~~~~~~~~~~s~P~w~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~RvN~~k~~~~~~~~~l 80 (329)
|||||||++.|+.+...+. ...++++||+|.||+++|.+.|++ +++++++++++++|+|+|||+.|++++++.+.|
T Consensus 109 fVNgVLr~i~r~~~~~~~~--~~~l~~~~s~P~wl~~~~~~~~~~--~~~~~l~~~~~~~~~~~Rvn~~k~~~~~~~~~l 184 (426)
T TIGR00563 109 LVNGVLRRFQREQEELLAE--FNALDARYLHPEWLVKRLQKAYPG--QWQSICEANNQRPPMWLRINRTKHSRDEWLALL 184 (426)
T ss_pred hHHHHHHHHhhcchhhcch--hHhHHHHcCCCHHHHHHHHHHhHH--HHHHHHHHhCCCCCeEEEEcCCcCCHHHHHHHH
Confidence 7999999999975432111 135788999999999999999965 788999999999999999999999999999999
Q ss_pred HHCCCeeEE--eCCceEEEcCCCCCCCCcccccceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CE
Q psy15212 81 KKSGLETTI--IGPLAIKLHTPISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IK 157 (329)
Q Consensus 81 ~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~ 157 (329)
+++|+...+ +.++++.+..+..+..++.|++|++++||.+|++++.++++++|++|||+|||||+||++++++++ ++
T Consensus 185 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~ 264 (426)
T TIGR00563 185 AEAGMKGFPHDLAPDAVRLETPAAVHALPGFEEGWVTVQDASAQWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQ 264 (426)
T ss_pred HhcCCceeeCCCCCCeEEECCCCCcccCchhhCCeEEEECHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCe
Confidence 999988765 567888887766788999999999999999999999999999999999999999999999999887 89
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCceEE--EecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccC
Q psy15212 158 LISVDNNLSRLNMISENLKRLNLKATL--ILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRN 235 (329)
Q Consensus 158 v~avD~~~~rl~~l~~n~~~~g~~v~~--~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~ 235 (329)
|+|+|+++.+++.+++|++++|+.+.+ ..+|..... .+...+.||.|++||||||+|+++++
T Consensus 265 v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~----------------~~~~~~~fD~VllDaPcSg~G~~~~~ 328 (426)
T TIGR00563 265 VVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPS----------------QWAENEQFDRILLDAPCSATGVIRRH 328 (426)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccc----------------ccccccccCEEEEcCCCCCCcccccC
Confidence 999999999999999999999987444 556655432 11134679999999999999999999
Q ss_pred CCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHHHHHhhCCCcEEecCC---------Ccc
Q psy15212 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSP---------GQL 306 (329)
Q Consensus 236 p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~~~~~~~~~~~---------~~~ 306 (329)
|+++|.++++++..+..+|.++|.+|+++|||||+|||||||++++|||++|++|+++||++.+.... .++
T Consensus 329 p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 408 (426)
T TIGR00563 329 PDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQEHPDFPFEKTGTPEQVRDGGLQI 408 (426)
T ss_pred cchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHhCCCCeeccCCCccccCCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999998754321 257
Q ss_pred cCCCCCCCCCCeEEEEEEEec
Q psy15212 307 LPTVNKKQDYDGFFYSLFQKR 327 (329)
Q Consensus 307 ~p~~~~~~~~~gff~a~l~k~ 327 (329)
+|+. +++||||+|+|+|.
T Consensus 409 ~P~~---~~~dGff~a~l~k~ 426 (426)
T TIGR00563 409 LPHA---EEGDGFFYAKLIKK 426 (426)
T ss_pred CCCC---CCCCCeEEEEEEeC
Confidence 8987 89999999999984
No 5
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=100.00 E-value=1.4e-65 Score=501.77 Aligned_cols=280 Identities=22% Similarity=0.379 Sum_probs=252.7
Q ss_pred cCCcHHHHHHHHHhCCChHHHHHHHHHhCCCCCeeEEEcCCCCCHHHHHHHHHHCCCeeEE--eCCceEEEcCC----CC
Q psy15212 29 WNYPIWWINQVKITYPNFFQWKNILDVGHKKPPLTLRINQRKTTLISYNKLLKKSGLETTI--IGPLAIKLHTP----IS 102 (329)
Q Consensus 29 ~s~P~w~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~RvN~~k~~~~~~~~~l~~~g~~~~~--~~~~~~~~~~~----~~ 102 (329)
..+|.||+++|.+.||+.++++++++++++|+|.++|||++|++.+++.+.|++.|+..++ ++++++.+... ..
T Consensus 2 ~~lP~~fv~~~~~~lg~~ee~~~~l~a~~~~~~~~lRvN~lK~~~~~~~~~L~~~g~~~~~~p~~~~g~~~~~~~~~~~~ 81 (470)
T PRK11933 2 VYLPDAFLTQMREAMPSHLSMDDFIAACQRPLRRSIRVNTLKISVADFLQLMAPYGWTLTPIPWCEEGFWIERDDEDALP 81 (470)
T ss_pred CcChHHHHHHHHHHhCCcHHHHHHHHHcCCCCCeEEEEcCCcCCHHHHHHHHHhCCCceeECCCCCceEEEecCccccCC
Confidence 4599999999999999524799999999999999999999999999999999999987765 56788888642 35
Q ss_pred CCCCcccccceEEEechhHHHHhhhc--CCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHc
Q psy15212 103 ISKIPKFFNGFCSIQDAAAQLAAPLL--DIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRL 178 (329)
Q Consensus 103 ~~~~~~~~~G~~~~Qd~~s~l~~~~l--~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~ 178 (329)
+..+++|..|.+|+||++||+++.+| ++++|++|||+||||||||+++|++++ +.|+|+|+++.|++.+++|++++
T Consensus 82 ~~~~~~~~~G~~yvQd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~ 161 (470)
T PRK11933 82 LGNTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRC 161 (470)
T ss_pred cccChHHHCCcEEEECHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHc
Confidence 78999999999999999999999999 899999999999999999999999986 79999999999999999999999
Q ss_pred CCc-eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHH
Q psy15212 179 NLK-ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKI 257 (329)
Q Consensus 179 g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~l 257 (329)
|+. +.+++.|+..+. .. ....||+||+||||||+|+++|+|+++|.|+++++..++.+|++|
T Consensus 162 G~~nv~v~~~D~~~~~----------------~~-~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~i 224 (470)
T PRK11933 162 GVSNVALTHFDGRVFG----------------AA-LPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQREL 224 (470)
T ss_pred CCCeEEEEeCchhhhh----------------hh-chhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHH
Confidence 997 788999988754 11 235799999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCEEEEEcCCCCccccHHHHHHHHhhCCCcE-EecCC---------------CcccCCCCCCCCCCeEEE
Q psy15212 258 LNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSI-RLNSP---------------GQLLPTVNKKQDYDGFFY 321 (329)
Q Consensus 258 L~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~~~~~~-~~~~~---------------~~~~p~~~~~~~~~gff~ 321 (329)
|.+|+++|||||+|||||||++++|||+||++||++|+++. +++.+ .+++|+. +++||||+
T Consensus 225 L~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~---~~~dGfFi 301 (470)
T PRK11933 225 IESAFHALKPGGTLVYSTCTLNREENQAVCLWLKETYPDAVEFEPLGDLFPGAEKALTEEGFLHVFPQI---YDSEGFFV 301 (470)
T ss_pred HHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHHCCCcEEeccccccccccccccCCCCeEEECCCC---CCCcceee
Confidence 99999999999999999999999999999999999998843 43221 1578987 89999999
Q ss_pred EEEEecC
Q psy15212 322 SLFQKRK 328 (329)
Q Consensus 322 a~l~k~~ 328 (329)
|+|+|.+
T Consensus 302 A~lrk~~ 308 (470)
T PRK11933 302 ARLRKTA 308 (470)
T ss_pred EEEEecC
Confidence 9999974
No 6
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=2e-64 Score=493.52 Aligned_cols=305 Identities=45% Similarity=0.814 Sum_probs=276.2
Q ss_pred CeeeecchhhhcccccccccccCCchhhcCCcHHHHHHHHHhCCChHHHHHHHHHhCCCCCeeEEEcCCCCCHHHHHHHH
Q psy15212 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPPLTLRINQRKTTLISYNKLL 80 (329)
Q Consensus 1 ~vNavlr~~~~~~~~~~~~~~~~~~~~~~s~P~w~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~RvN~~k~~~~~~~~~l 80 (329)
|||||||++.++++.+.... ..+++++||+|.||+++|.+.||+ +++++++++++++|+|+|||++|++++++.+.|
T Consensus 114 fVNaVLr~i~~~~~~~~~~~-~~~~~~~~s~P~wl~~~~~~~~~~--~~~~~~~~~~~~~~~~~Rvn~~k~~~~~~~~~l 190 (427)
T PRK10901 114 LVNAVLRRFQREQEELLAEL-QADPVARYNHPSWLIKRLKKAYPE--QWQAILAANNQRPPMWLRVNRRHHSRDAYLALL 190 (427)
T ss_pred hHHHHHHHhhhhhhhhhhhh-hhchHhHhcCCHHHHHHHHHHhHH--HHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHH
Confidence 79999999998755432212 246889999999999999999975 889999999999999999999999999999999
Q ss_pred HHCCCeeEE--eCCceEEEcCCCCCCCCcccccceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CE
Q psy15212 81 KKSGLETTI--IGPLAIKLHTPISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IK 157 (329)
Q Consensus 81 ~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~ 157 (329)
+.+|+..++ +.++++.+..+..+..+++|++|++++||.+|++++.++++++|++|||+|||||++|++++++++ ++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~iQd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~ 270 (427)
T PRK10901 191 AEAGIEAFPHAVGPDAIRLETPVPVHQLPGFAEGWVSVQDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQ 270 (427)
T ss_pred HhCCCceeecCCCCCeEEECCCCCcccCchhhCceEEEECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCE
Confidence 999988866 668999998766788999999999999999999999999999999999999999999999999876 79
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCC
Q psy15212 158 LISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237 (329)
Q Consensus 158 v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~ 237 (329)
|+|+|+++.+++.+++|++++|+.++++.+|+..+. .+...+.||.|++|||||++|+++++|+
T Consensus 271 v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~----------------~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~ 334 (427)
T PRK10901 271 VVALDIDAQRLERVRENLQRLGLKATVIVGDARDPA----------------QWWDGQPFDRILLDAPCSATGVIRRHPD 334 (427)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccch----------------hhcccCCCCEEEECCCCCcccccccCcc
Confidence 999999999999999999999988889999998753 1223467999999999999999999999
Q ss_pred CcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHHHHHhhCCCcEEecCC------CcccCCCC
Q psy15212 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSP------GQLLPTVN 311 (329)
Q Consensus 238 ~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~~~~~~~~~~~------~~~~p~~~ 311 (329)
++|.++++++..+...|.++|..++++|||||+|||||||++++|||++|..++++|+++++++.. .+++|+.
T Consensus 335 ~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~~~~~~~~~~~~~~~~~~~~~P~~- 413 (427)
T PRK10901 335 IKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLARHPDAELLDTGTPQQPGRQLLPGE- 413 (427)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHhCCCCEEecCCCCCCCceEECCCC-
Confidence 999999999999999999999999999999999999999999999999999999999999877632 2678987
Q ss_pred CCCCCCeEEEEEEEec
Q psy15212 312 KKQDYDGFFYSLFQKR 327 (329)
Q Consensus 312 ~~~~~~gff~a~l~k~ 327 (329)
+++||||+|+|+|+
T Consensus 414 --~~~dGff~a~l~k~ 427 (427)
T PRK10901 414 --EDGDGFFYALLIKR 427 (427)
T ss_pred --CCCCCeEEEEEEEC
Confidence 89999999999985
No 7
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=4.1e-62 Score=479.64 Aligned_cols=304 Identities=26% Similarity=0.383 Sum_probs=264.7
Q ss_pred Ceeeecchhhhcccccccc----cccCCchhhcCCcHHHHHHHHHhCCChHHHHHHHHHhCCCCCeeEEEcCCCCCHHHH
Q psy15212 1 MINAILREFLRKKGEIFKS----KMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPPLTLRINQRKTTLISY 76 (329)
Q Consensus 1 ~vNavlr~~~~~~~~~~~~----~~~~~~~~~~s~P~w~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~RvN~~k~~~~~~ 76 (329)
|||||||+++++...+... .....++++||+|.||+++|.+.||. +++.+++++++++||+++|||+++++++++
T Consensus 117 fVNgVLr~i~~~~~~~~~~~~~~~~~~~l~~~~s~P~wl~~~~~~~~g~-~~~~~~~~~~~~~~~~~~Rvn~~~~~~~~~ 195 (445)
T PRK14904 117 LVNGVLRNISPETISLDEWLKGMPEAERLSLLYSHPEWLLERWIARYGE-ERTEAMLSYNNQAPLFGFRINRLKTTPEKF 195 (445)
T ss_pred chHHHHHHHHHhhccccccccccchHHHHHHHhCCCHHHHHHHHHHhCh-HHHHHHHHHhCCCCCceeEeCCCCCCHHHH
Confidence 8999999999975332211 11134678999999999999999997 788999999999999999999999999999
Q ss_pred HHHHHHCCCeeEEeCCceEEEcCCCCCCCCcccccceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-
Q psy15212 77 NKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD- 155 (329)
Q Consensus 77 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~- 155 (329)
.+.|..+|+...+....++.+... .....+.|..|.+++||++|++++.++++.+|++|||+|||||+||.+++++++
T Consensus 196 ~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~G~~~vqd~~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~ 274 (445)
T PRK14904 196 LAAPADASVTFEKSGLPNFFLSKD-FSLFEPFLKLGLVSVQNPTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQN 274 (445)
T ss_pred HHHHHhCCCceEEcCcceEEEecc-ccccChHHhCcEEEEeCHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCC
Confidence 999999998876543235555432 222337999999999999999999999999999999999999999999998764
Q ss_pred -CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccc
Q psy15212 156 -IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVR 233 (329)
Q Consensus 156 -~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~ 233 (329)
++|+|+|+++.+++.+++|++++|+. ++++.+|+..+. ....||+|++||||||+|+++
T Consensus 275 ~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-------------------~~~~fD~Vl~D~Pcsg~g~~~ 335 (445)
T PRK14904 275 RGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-------------------PEEQPDAILLDAPCTGTGVLG 335 (445)
T ss_pred CcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-------------------cCCCCCEEEEcCCCCCcchhh
Confidence 69999999999999999999999997 889999987653 245799999999999999999
Q ss_pred cCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHHHHHhhCCCcEEecCC----------
Q psy15212 234 RNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSP---------- 303 (329)
Q Consensus 234 ~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~~~~~~~~~~~---------- 303 (329)
++|+++|.++++++..+...|.++|.+++++|||||+|||||||++++|||+||++||++|+++..++.+
T Consensus 336 r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~~~~~~~~~~~~~l~~~~~~~ 415 (445)
T PRK14904 336 RRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQRHPEFSAEPSPGSLPEPFHEV 415 (445)
T ss_pred cCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCCCCEEeccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999988765421
Q ss_pred ------CcccCCCCCCC-CCCeEEEEEEEecC
Q psy15212 304 ------GQLLPTVNKKQ-DYDGFFYSLFQKRK 328 (329)
Q Consensus 304 ------~~~~p~~~~~~-~~~gff~a~l~k~~ 328 (329)
.+++|+. + ++||||+|+|+|..
T Consensus 416 ~~~~~~~~~~P~~---~~~~dGfF~a~l~k~~ 444 (445)
T PRK14904 416 AHPKGAILTLPGE---HEGFDGGFAQRLRKNA 444 (445)
T ss_pred cCCCCcEEECCCC---CCCCCcEEEEEEEecC
Confidence 1468875 5 78999999999974
No 8
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=9.3e-62 Score=477.30 Aligned_cols=306 Identities=33% Similarity=0.523 Sum_probs=273.2
Q ss_pred Ceeeecchhhhcccc-cccccc-cCCchhhcCCcHHHHHHHHHhCCChHHHHHHHHHhCCCCCeeEEEcCCCCCHHHHHH
Q psy15212 1 MINAILREFLRKKGE-IFKSKM-YNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPPLTLRINQRKTTLISYNK 78 (329)
Q Consensus 1 ~vNavlr~~~~~~~~-~~~~~~-~~~~~~~~s~P~w~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~RvN~~k~~~~~~~~ 78 (329)
|||||||++.++... +..... ..+++++||+|.||+++|.+.||. +++.++++++++++|+|+|+|+.|++++++.+
T Consensus 117 fVNaVL~~i~~~~~~~~~~~~~~~~~~~~~~~~P~w~~~~~~~~~g~-~~~~~~l~~~~~~~~~~~Rvn~~k~~~~~~~~ 195 (444)
T PRK14902 117 FVNGVLRNILREGLPDIDEIKDPVKRLSIKYSHPVWLVKRWIDQYGE-EKAEKILESLNEPPKASIRVNTLKISVEELIE 195 (444)
T ss_pred HHHHHHHHHhhccccccccccCHHHHHHHHhCChHHHHHHHHHHhCH-HHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHH
Confidence 799999999987422 111111 134788999999999999999997 78999999999999999999999999999999
Q ss_pred HHHHCCCeeEE--eCCceEEEcCCCCCCCCcccccceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-
Q psy15212 79 LLKKSGLETTI--IGPLAIKLHTPISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD- 155 (329)
Q Consensus 79 ~l~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~- 155 (329)
.|+++|+...+ +.|+++.++. ..+..++.|++|.+++||.+|++++.++++++|++|||+|||||++|+++++.++
T Consensus 196 ~l~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~G~~~~qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~ 274 (444)
T PRK14902 196 KLEEEGYEVEESLLSPEALVIEK-GNIAGTDLFKDGLITIQDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKN 274 (444)
T ss_pred HHHHcCceeEEcCCCCCeEEEeC-CCcccChHHhCceEEEEChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCC
Confidence 99999987765 5678888876 5688999999999999999999999999999999999999999999999999873
Q ss_pred -CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccc
Q psy15212 156 -IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVR 233 (329)
Q Consensus 156 -~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~ 233 (329)
++|+|+|+++.+++.+++|++++|+. ++++++|+.... ..+ .+.||+|++||||||+|+++
T Consensus 275 ~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~----------------~~~-~~~fD~Vl~D~Pcsg~G~~~ 337 (444)
T PRK14902 275 TGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVH----------------EKF-AEKFDKILVDAPCSGLGVIR 337 (444)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCccccc----------------chh-cccCCEEEEcCCCCCCeeec
Confidence 79999999999999999999999987 899999988753 111 26799999999999999999
Q ss_pred cCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHHHHHhhCCCcEEecCC----------
Q psy15212 234 RNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSP---------- 303 (329)
Q Consensus 234 ~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~~~~~~~~~~~---------- 303 (329)
++|+++|.+++.++..+..+|.++|+.|+++|||||+|||||||++++|||.+|.+++++|++++.++..
T Consensus 338 ~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~~~~~~~~~~~~~~~~~~ 417 (444)
T PRK14902 338 RKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEHPEFELVPLQHEKPDELVYE 417 (444)
T ss_pred cCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCCCcEEeccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999988877642
Q ss_pred -----CcccCCCCCCCCCCeEEEEEEEecC
Q psy15212 304 -----GQLLPTVNKKQDYDGFFYSLFQKRK 328 (329)
Q Consensus 304 -----~~~~p~~~~~~~~~gff~a~l~k~~ 328 (329)
.+++|+. +++||||+|+|+|.+
T Consensus 418 ~~~~~~r~~P~~---~~~dGfF~a~l~k~~ 444 (444)
T PRK14902 418 VKDGYLQILPND---YGTDGFFIAKLRKKG 444 (444)
T ss_pred ccCCeEEECCCC---CCCCCeEEEEEEECC
Confidence 1568887 899999999999974
No 9
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=100.00 E-value=3.4e-61 Score=446.08 Aligned_cols=255 Identities=40% Similarity=0.644 Sum_probs=228.4
Q ss_pred HHHHhCCCCCeeEEEcCCCCCHHHHHHHHHHCCCeeEEe--CCce--EEEcCCCCCCCCcccccceEEEechhHHHHhhh
Q psy15212 52 ILDVGHKKPPLTLRINQRKTTLISYNKLLKKSGLETTII--GPLA--IKLHTPISISKIPKFFNGFCSIQDAAAQLAAPL 127 (329)
Q Consensus 52 ~l~~~~~~~p~~~RvN~~k~~~~~~~~~l~~~g~~~~~~--~~~~--~~~~~~~~~~~~~~~~~G~~~~Qd~~s~l~~~~ 127 (329)
+|++++.++|.++|||++|++++++.+.|+++|+..++. .+++ +.......+..++.|++|++++||.+||+++.+
T Consensus 1 il~~~n~~~~~~iRvN~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~G~~~vQd~sS~l~~~~ 80 (283)
T PF01189_consen 1 ILEANNCPPPVTIRVNTLKISREELLEELEEEGIQLEPIPRSPDALRVIGKSPYSICSLPEFKNGLFYVQDESSQLVALA 80 (283)
T ss_dssp HHHHCTS--GEEEEE-TTTSSHHHHHHHHHHTTHEEEEETSTTCEEEEEEECSSCGGGSHHHHTTSEEEHHHHHHHHHHH
T ss_pred CccccCCCCCeEEEECcCcCCHHHHHHHHhhcccceEEcccccchhccccccccchhhchhhhCCcEEeccccccccccc
Confidence 688999999999999999999999999999999998875 4566 344556788999999999999999999999999
Q ss_pred cCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhccc
Q psy15212 128 LDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKK 204 (329)
Q Consensus 128 l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~ 204 (329)
|.+++|+.|||+||||||||+++|++++ +.|+|+|++.+|+..+++|++++|+. +.++..|++...
T Consensus 81 L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~----------- 149 (283)
T PF01189_consen 81 LDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLD----------- 149 (283)
T ss_dssp HTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHH-----------
T ss_pred ccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccc-----------
Confidence 9999999999999999999999999998 89999999999999999999999998 777778988764
Q ss_pred ccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcC----CCCCEEEEEcCCCCc
Q psy15212 205 TNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKML----KPGGKLLFVTCSLWF 280 (329)
Q Consensus 205 ~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~L----kpgG~lvysTCS~~~ 280 (329)
.......||+||+||||||+|+++++|+++|.++++++..+..+|.++|++|++++ ||||+|||||||+++
T Consensus 150 -----~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~ 224 (283)
T PF01189_consen 150 -----PKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSP 224 (283)
T ss_dssp -----HHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHG
T ss_pred -----ccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHH
Confidence 11223469999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred cccHHHHHHHHhhCCCcEEecCC-----------------CcccCCCCCCCCCCeEEEEEEE
Q psy15212 281 EESEEQAIIFSKNHKDSIRLNSP-----------------GQLLPTVNKKQDYDGFFYSLFQ 325 (329)
Q Consensus 281 ~Ene~vv~~~l~~~~~~~~~~~~-----------------~~~~p~~~~~~~~~gff~a~l~ 325 (329)
+|||+||++||++|+++++++.+ .+++|+. +++||||+|+||
T Consensus 225 eENE~vV~~fl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~P~~---~~~dGFFiA~lr 283 (283)
T PF01189_consen 225 EENEEVVEKFLKRHPDFELVPIPLPEPPPGFKSYPIGEGCLRILPHR---HGTDGFFIAKLR 283 (283)
T ss_dssp GGTHHHHHHHHHHSTSEEEECCESSTCEEESSGGCTGGGSEEESTTT---SSSSSEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCcEEEeccccccccccccccCCCCEEEeCCCC---CCCCCEEEEEeC
Confidence 99999999999999999887642 1578887 899999999997
No 10
>KOG1122|consensus
Probab=100.00 E-value=6.3e-57 Score=420.74 Aligned_cols=286 Identities=26% Similarity=0.469 Sum_probs=259.3
Q ss_pred CCchhhcCCcHHHHHHHHHhCCChHHHHHHHHHhCCCCCeeEEEcCCCCCHHHHHHHHHHCCCeeEEeC---CceEEE-c
Q psy15212 23 NIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPPLTLRINQRKTTLISYNKLLKKSGLETTIIG---PLAIKL-H 98 (329)
Q Consensus 23 ~~~~~~~s~P~w~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~RvN~~k~~~~~~~~~l~~~g~~~~~~~---~~~~~~-~ 98 (329)
.+.+.+|.+-.++.+.+.+.++- .++.+++++...+.|+++|.||+|+-+-++...|...|+-..+.. .-++.+ .
T Consensus 129 ~~~~~~y~y~~~l~~~~~e~~~~-~ev~~~~e~~~~~rp~tir~ntlk~~rrd~~~~L~nrgv~~~pl~~ws~vgl~v~~ 207 (460)
T KOG1122|consen 129 KDGAHYYAYGVFLAEKLMELFPL-VEVYEFLEANEKPRPVTIRTNTLKTRRRDLAVELSNRGVNLDPLGKWSKVGLVVFD 207 (460)
T ss_pred hcccceechHHHHHHHhcccccH-HHHHHHHHhhcCCCCeeEEecccchhhhhHHHHHHhcccCcccccccccceEEEec
Confidence 46788999999999999999985 788899999999999999999999999899999999998776643 456665 4
Q ss_pred CCCCCCCCcccccceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHH
Q psy15212 99 TPISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176 (329)
Q Consensus 99 ~~~~~~~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~ 176 (329)
+..++..++.|..|++.+|+.+|.+++++|+|+||++||||||+|||||+|+|.+|+ |.|+|+|.+..|++.+++|+.
T Consensus 208 s~vpigat~e~lag~~~LQ~~sS~Lpv~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~ 287 (460)
T KOG1122|consen 208 SVVPIGATPEYLAGHYMLQNASSFLPVMALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLH 287 (460)
T ss_pred CccccCCchhhcccceeeccCcccceeeecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHH
Confidence 567899999999999999999999999999999999999999999999999999998 899999999999999999999
Q ss_pred HcCCc-eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHH
Q psy15212 177 RLNLK-ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSC 255 (329)
Q Consensus 177 ~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~ 255 (329)
++|+. ..+.+.|...++. ..+.. +||+||+||||||+|++.|.+.++|.++..++.++..+|+
T Consensus 288 rlGv~ntiv~n~D~~ef~~---------------~~~~~-~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr 351 (460)
T KOG1122|consen 288 RLGVTNTIVSNYDGREFPE---------------KEFPG-SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQR 351 (460)
T ss_pred HhCCCceEEEccCcccccc---------------cccCc-ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHH
Confidence 99998 5677889887641 11233 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCCCccccHHHHHHHHhhCCCcEEecCC------C---------------cccCCCCCCC
Q psy15212 256 KILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSP------G---------------QLLPTVNKKQ 314 (329)
Q Consensus 256 ~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~~~~~~~~~~~------~---------------~~~p~~~~~~ 314 (329)
++|..|.+++++||+|||||||+.++|||+||+++|+++|++++.|.. | ++.|+. |
T Consensus 352 ~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~yaL~K~p~~kL~p~~~~iG~~G~~~~~~~~psl~~~~r~yPh~---h 428 (460)
T KOG1122|consen 352 ELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYALKKRPEVKLVPTGLDIGGEGRFRGGRFHPSLKLTRRFYPHV---H 428 (460)
T ss_pred HHHHHHHhhccCCcEEEEEeeecchhhhHHHHHHHHHhCCceEeccccccCCCCCcccCcccCcchhheeeecCcc---c
Confidence 999999999999999999999999999999999999999999998752 1 467887 9
Q ss_pred CCCeEEEEEEEecC
Q psy15212 315 DYDGFFYSLFQKRK 328 (329)
Q Consensus 315 ~~~gff~a~l~k~~ 328 (329)
.+||||+|+|+|.+
T Consensus 429 nmdgffvaKl~k~s 442 (460)
T KOG1122|consen 429 NMDGFFVAKLKKAS 442 (460)
T ss_pred CCchHHHHHHHhhc
Confidence 99999999999864
No 11
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=100.00 E-value=2.9e-55 Score=403.57 Aligned_cols=242 Identities=26% Similarity=0.434 Sum_probs=218.0
Q ss_pred EEEcCCCCCHHHHHHHHHHCCCeeEEeC-CceEEEcC-CCCCCCCcccccceEEEechhHHHHhhhcCCCCCCeEEeecC
Q psy15212 64 LRINQRKTTLISYNKLLKKSGLETTIIG-PLAIKLHT-PISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACS 141 (329)
Q Consensus 64 ~RvN~~k~~~~~~~~~l~~~g~~~~~~~-~~~~~~~~-~~~~~~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlca 141 (329)
+|||++|++++++.+.|++.|+..+++. +.++.+.. ...+..+++|.+|++++||.+|++++.++++++|++|||+||
T Consensus 1 ~RvN~lk~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~qd~~s~~~~~~l~~~~g~~VLDl~a 80 (264)
T TIGR00446 1 IRVNTLKISVADLLQRLENRGVTLIPWCEEGFFEVNESPLPIGSTPEYLSGLYYIQEASSMIPPLALEPDPPERVLDMAA 80 (264)
T ss_pred CeecCCCCCHHHHHHHHHhCCCceeecCCCceEEEeCCCCCcccChhHhCCeEEEECHHHHHHHHHhCCCCcCEEEEECC
Confidence 6999999999999999999999887764 35565653 446889999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhcccccccccccCCCCCC
Q psy15212 142 APGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFD 218 (329)
Q Consensus 142 g~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD 218 (329)
|||+||++++++++ +.|+|+|+++.+++.+++|++++|+. +.++..|+..+. ...+.||
T Consensus 81 g~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~------------------~~~~~fD 142 (264)
T TIGR00446 81 APGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFG------------------AAVPKFD 142 (264)
T ss_pred CchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhh------------------hhccCCC
Confidence 99999999999875 79999999999999999999999986 889999987654 1234699
Q ss_pred EEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHHHHHhhCCCcE
Q psy15212 219 RILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSI 298 (329)
Q Consensus 219 ~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~~~~~~ 298 (329)
+||+||||||+|+++++|+.+|.++++++..+...|.++|++|+++|||||+|||||||++++|||+||++|+++|+++.
T Consensus 143 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~~~~~~ 222 (264)
T TIGR00446 143 AILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLEKRPDVV 222 (264)
T ss_pred EEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHHhCCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred EecCC-----------------CcccCCCCCCCCCCeEEEEEEEe
Q psy15212 299 RLNSP-----------------GQLLPTVNKKQDYDGFFYSLFQK 326 (329)
Q Consensus 299 ~~~~~-----------------~~~~p~~~~~~~~~gff~a~l~k 326 (329)
..+.. .+++|+. +++||||+|+|+|
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~r~~P~~---~~~dGfF~a~l~k 264 (264)
T TIGR00446 223 EELPKGDEFFGANKGKEEVKGALRVFPQI---YDCEGFFVAKLRK 264 (264)
T ss_pred EeccCCcccccccccccccCCeEEECCCC---CCCCcEEEEEEEC
Confidence 55211 1467887 8999999999987
No 12
>KOG2198|consensus
Probab=100.00 E-value=7.6e-41 Score=310.14 Aligned_cols=252 Identities=27% Similarity=0.379 Sum_probs=193.7
Q ss_pred HHHHHhCC-ChHHHHHHHHHhCCCCCeeEEEcCCCCCHHHHHHHHHHC-----------C--Cee---EEeCCceEEEcC
Q psy15212 37 NQVKITYP-NFFQWKNILDVGHKKPPLTLRINQRKTTLISYNKLLKKS-----------G--LET---TIIGPLAIKLHT 99 (329)
Q Consensus 37 ~~~~~~~~-~~~~~~~~l~~~~~~~p~~~RvN~~k~~~~~~~~~l~~~-----------g--~~~---~~~~~~~~~~~~ 99 (329)
.+..+.|. + +++.++.+.+..+.|..+|+.......+++...+++. | ++. .++.|+++.+..
T Consensus 30 ~~~l~~f~~~-~e~~~~~~~ir~~Lps~fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~e~~~~~p~~p~~~a~~~ 108 (375)
T KOG2198|consen 30 YKALDHFDKE-DEFGDFWETIRKPLPSTFRYTALVNNADALLSIFEEYEFESLKDRVIEGLKFEAPFELPWYPDNLAFEK 108 (375)
T ss_pred HHHHhcCcch-HHHHHHHHHHHhccchhhhHHHhccchHHHHHHHhhccchhhhhhhccccccCccccCCCCcccchhhh
Confidence 34444554 4 6899999999999999999987766555544333222 2 221 234444444322
Q ss_pred ---------CCCCCCCccc-----ccceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-----CEEEE
Q psy15212 100 ---------PISISKIPKF-----FNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-----IKLIS 160 (329)
Q Consensus 100 ---------~~~~~~~~~~-----~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-----~~v~a 160 (329)
..++.+++.| .-|.++.||.+||+++.+|+++||++|||||||||+||+++.+... +.|+|
T Consensus 109 ~~~~~~~r~~~~l~rf~~fl~~e~~vg~i~rqeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vva 188 (375)
T KOG2198|consen 109 DVKLDEIRKSPPLSRFHGFLKLETGVGNIYRQEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVA 188 (375)
T ss_pred cCcccccccCCchhhcchHhhhhcccccchhhhhhhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEe
Confidence 2223344444 3599999999999999999999999999999999999999988654 49999
Q ss_pred EeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCc
Q psy15212 161 VDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIP 239 (329)
Q Consensus 161 vD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~ 239 (329)
+|.+..|+..+.+.+++..-. ..+...|+..++ ..++. + .+ -.....||+||||+||||+|+++++|++.
T Consensus 189 ND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p--~~~~~-~--~~----~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~ 259 (375)
T KOG2198|consen 189 NDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFP--NIYLK-D--GN----DKEQLKFDRVLVDVPCSGDGTLRKNPNIW 259 (375)
T ss_pred cccCHHHHHHHHHHHhccCCcceeeecccceecc--ccccc-c--Cc----hhhhhhcceeEEecccCCCcccccCchHh
Confidence 999999999999999776554 567777777655 11110 0 00 01336899999999999999999999986
Q ss_pred cc-CChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHHHHHhhCCCcE
Q psy15212 240 WL-RRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSI 298 (329)
Q Consensus 240 ~~-~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~~~~~~ 298 (329)
-. |..++...|..+|.+||.+++++||+||+|||||||++|-|||.||+..|+...+..
T Consensus 260 ~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEaVV~~~L~~~~~~~ 319 (375)
T KOG2198|consen 260 KEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEAVVQEALQKVGGAV 319 (375)
T ss_pred hhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHHHHHHHHHHhcCcc
Confidence 43 777777889999999999999999999999999999999999999999999886543
No 13
>KOG2360|consensus
Probab=100.00 E-value=7.5e-36 Score=276.80 Aligned_cols=252 Identities=28% Similarity=0.356 Sum_probs=204.1
Q ss_pred hCCCCCeeEEEcCCCCCHHHHHHHHHHCCCee-----------EEeCCceEEEcCCCCCCCCcccccceEEEechhHHHH
Q psy15212 56 GHKKPPLTLRINQRKTTLISYNKLLKKSGLET-----------TIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAAQLA 124 (329)
Q Consensus 56 ~~~~~p~~~RvN~~k~~~~~~~~~l~~~g~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~~s~l~ 124 (329)
.+.+.|+|+|+||++.+.++.+..|..+++.. .+..+..+.++.+..+..++.|+.|++++||.+|+++
T Consensus 126 ~~~~~pr~vRINtlk~~~~e~~~~L~~e~~~~~~~l~p~~~~~D~~~~~ll~~~~~n~i~~~~ly~~g~~ilqd~asclp 205 (413)
T KOG2360|consen 126 MKIPLPRYVRINTLKGTTDEALDYLDYEKWKMITELKPDEFYVDPHVENLIIFPPSNFIVEHELYKNGKFILQDKASCLP 205 (413)
T ss_pred CCCCCceeEEeecccCchhhhhhhhhhhhhhhhhhcCCcceeccccchhhcccCCCcceeeccccccCceEEechhhcch
Confidence 33589999999999999998888887776651 2222333444445567789999999999999999999
Q ss_pred hhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhh
Q psy15212 125 APLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDI 201 (329)
Q Consensus 125 ~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~ 201 (329)
+++|+|.+|..|+|+||+||.||+|+|..+. ++|+|+|.+..|.+.+++.+...|++ +..+.+|+....
T Consensus 206 A~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t~-------- 277 (413)
T KOG2360|consen 206 AHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNTA-------- 277 (413)
T ss_pred hhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCCC--------
Confidence 9999999999999999999999999999876 89999999999999999999999998 777799988742
Q ss_pred cccccccccccCCCCCCEEEEccCCccccccccCCCCc--ccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCC
Q psy15212 202 NKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIP--WLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLW 279 (329)
Q Consensus 202 ~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~--~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~ 279 (329)
++. .-+....||+||+|||+|+..+.-... -..+++++..+...|..++++|+.+ ..=-+++|||||++
T Consensus 278 ---~~~-----~~~~v~~iL~DpscSgSgm~~r~~~~~~~e~~~~~rL~~L~~fq~~~~~hal~f-p~~k~vvystcs~~ 348 (413)
T KOG2360|consen 278 ---TPE-----KFRDVTYILVDPSCSGSGMVSRQDEDPGAETESPERLENLQSFQIRILKHALTF-PNLKRLVYSTCSLH 348 (413)
T ss_pred ---Ccc-----cccceeEEEeCCCCCCCccccceeeccCCCcccHHHHHHHHHHHHHHHHHHhcC-Cchhheeeecchhh
Confidence 111 124678999999999999987654433 2345688999999999999999883 33458999999999
Q ss_pred ccccHHHHHHHHhhCCCcEEecC----C-----C-----------cccCCCCCCCCCCeEEEEEEEec
Q psy15212 280 FEESEEQAIIFSKNHKDSIRLNS----P-----G-----------QLLPTVNKKQDYDGFFYSLFQKR 327 (329)
Q Consensus 280 ~~Ene~vv~~~l~~~~~~~~~~~----~-----~-----------~~~p~~~~~~~~~gff~a~l~k~ 327 (329)
.+|||+||+..|...|++..+.. | + +-.|.. ..++|||+|.+.|.
T Consensus 349 reene~vv~d~l~~~p~~~~l~~kK~~p~w~~rg~~~~~~~e~~lr~~p~~---~~~~gffva~fer~ 413 (413)
T KOG2360|consen 349 REENEQVVQEVLQQNPDAKRLAPKKVLPAWPHRGLSTFSGAEHCLRASPKS---TLTIGFFVALFERV 413 (413)
T ss_pred hhhhhHHHHHHHhhChhHhhhchhhcchhhhhcCCccccccccceecccCC---CCcceEEEEEeecC
Confidence 99999999999998887654432 1 0 223443 89999999988763
No 14
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.75 E-value=2.7e-17 Score=159.09 Aligned_cols=167 Identities=20% Similarity=0.210 Sum_probs=121.6
Q ss_pred CCCcccccceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--
Q psy15212 104 SKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-- 181 (329)
Q Consensus 104 ~~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-- 181 (329)
.-..+++.|+|..|......+..+. +|.+|||+|||+|+.+++++.....+|+++|+|+.+++.+++|++.+|+.
T Consensus 195 dl~~g~ktG~flDqr~~R~~~~~~~---~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~ 271 (396)
T PRK15128 195 DIQGGHKTGYYLDQRDSRLATRRYV---ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLS 271 (396)
T ss_pred ecccccccCcChhhHHHHHHHHHhc---CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCC
Confidence 3456788999999988777776653 58899999999999998877532259999999999999999999999973
Q ss_pred -eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHH
Q psy15212 182 -ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNN 260 (329)
Q Consensus 182 -v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~ 260 (329)
++++.+|+.+.. ..+ . ...++||.|++|||+... +...+........+++..
T Consensus 272 ~v~~i~~D~~~~l-~~~------------~-~~~~~fDlVilDPP~f~~-------------~k~~l~~~~~~y~~l~~~ 324 (396)
T PRK15128 272 KAEFVRDDVFKLL-RTY------------R-DRGEKFDVIVMDPPKFVE-------------NKSQLMGACRGYKDINML 324 (396)
T ss_pred cEEEEEccHHHHH-HHH------------H-hcCCCCCEEEECCCCCCC-------------ChHHHHHHHHHHHHHHHH
Confidence 789999987652 100 0 023579999999998632 122333444456788899
Q ss_pred HHhcCCCCCEEEEEcCCCCcc--ccHHHHHHHHhh-CCCcEEe
Q psy15212 261 LWKMLKPGGKLLFVTCSLWFE--ESEEQAIIFSKN-HKDSIRL 300 (329)
Q Consensus 261 a~~~LkpgG~lvysTCS~~~~--Ene~vv~~~l~~-~~~~~~~ 300 (329)
|.++|+|||.|+++|||-+-. +=.+.+.....+ ...++.+
T Consensus 325 a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l 367 (396)
T PRK15128 325 AIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFI 367 (396)
T ss_pred HHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 999999999999999995543 333444444333 2344444
No 15
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.73 E-value=1.2e-16 Score=152.98 Aligned_cols=164 Identities=23% Similarity=0.261 Sum_probs=127.0
Q ss_pred CcccccceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc---
Q psy15212 106 IPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK--- 181 (329)
Q Consensus 106 ~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~--- 181 (329)
....+.|.|..|..+...+...+. |.+|||+||.+|+.++++|. .| .+|++||+|...++.+++|++-+|+.
T Consensus 194 ~~g~kTGfFlDqR~~R~~l~~~~~---GkrvLNlFsYTGgfSv~Aa~-gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~ 269 (393)
T COG1092 194 VDGLKTGFFLDQRDNRRALGELAA---GKRVLNLFSYTGGFSVHAAL-GGASEVTSVDLSKRALEWARENAELNGLDGDR 269 (393)
T ss_pred CCcccceeeHHhHHHHHHHhhhcc---CCeEEEecccCcHHHHHHHh-cCCCceEEEeccHHHHHHHHHHHHhcCCCccc
Confidence 345688999999999988887764 99999999999999999996 45 59999999999999999999999985
Q ss_pred eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHH
Q psy15212 182 ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNL 261 (329)
Q Consensus 182 v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a 261 (329)
+.++++|+.++- ++.. -.+.+||+|++|||-.+ +++....+..+-..+++..+
T Consensus 270 ~~~i~~Dvf~~l-~~~~-------------~~g~~fDlIilDPPsF~-------------r~k~~~~~~~rdy~~l~~~~ 322 (393)
T COG1092 270 HRFIVGDVFKWL-RKAE-------------RRGEKFDLIILDPPSFA-------------RSKKQEFSAQRDYKDLNDLA 322 (393)
T ss_pred eeeehhhHHHHH-HHHH-------------hcCCcccEEEECCcccc-------------cCcccchhHHHHHHHHHHHH
Confidence 689999998763 1111 13469999999999442 23333455666678899999
Q ss_pred HhcCCCCCEEEEEcCCCCccccH---HHHHHHHhhCCCcEEe
Q psy15212 262 WKMLKPGGKLLFVTCSLWFEESE---EQAIIFSKNHKDSIRL 300 (329)
Q Consensus 262 ~~~LkpgG~lvysTCS~~~~Ene---~vv~~~l~~~~~~~~~ 300 (329)
.++|+|||+++.||||-+-...+ .+.+.+.......+.+
T Consensus 323 ~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~~~~~~~~ 364 (393)
T COG1092 323 LRLLAPGGTLVTSSCSRHFSSDLFLEIIARAAAAAGRRAQEI 364 (393)
T ss_pred HHHcCCCCEEEEEecCCccCHHHHHHHHHHHHHhcCCcEEEe
Confidence 99999999999999997766553 2333333333444444
No 16
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.67 E-value=3.8e-15 Score=138.51 Aligned_cols=157 Identities=18% Similarity=0.152 Sum_probs=111.5
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
+.++.+|||+|||+|..+..++...+ .+|+|+|+|+.+++.+++|++++|+. ++++.+|+....
T Consensus 119 ~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~------------- 185 (284)
T TIGR03533 119 PEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAAL------------- 185 (284)
T ss_pred cCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc-------------
Confidence 34567999999999999999998776 79999999999999999999999984 889999976432
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHH----HHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccc
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDI----KKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEE 282 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~----~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~E 282 (329)
.+.+||.|++||||...+.+...+.. +...+... ..-...++.++..+.++|+|||++++.+.. ..
T Consensus 186 ------~~~~fD~Iv~NPPy~~~~~~~~l~~~-~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~---~~ 255 (284)
T TIGR03533 186 ------PGRKYDLIVSNPPYVDAEDMADLPAE-YHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN---SM 255 (284)
T ss_pred ------CCCCccEEEECCCCCCccchhhCCHh-hhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc---CH
Confidence 23579999999999877655432211 11111111 112356778999999999999999876442 22
Q ss_pred cHHHHHHHHhhCCCcEEecCCCcccCCCCCCCCCCeEEEE
Q psy15212 283 SEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYS 322 (329)
Q Consensus 283 ne~vv~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~gff~a 322 (329)
+.+...+..+ ++..... . +..+|||+-
T Consensus 256 --~~v~~~~~~~-~~~~~~~-------~---~~~~~~~~~ 282 (284)
T TIGR03533 256 --EALEEAYPDV-PFTWLEF-------E---NGGDGVFLL 282 (284)
T ss_pred --HHHHHHHHhC-CCceeee-------c---CCCcEEEEE
Confidence 3455555554 2332221 1 688899873
No 17
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.66 E-value=3.5e-15 Score=154.47 Aligned_cols=158 Identities=18% Similarity=0.216 Sum_probs=120.5
Q ss_pred CCceEEEcCCCCCCCCcccccceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHH
Q psy15212 91 GPLAIKLHTPISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNM 170 (329)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~ 170 (329)
.++++.+. +.-....+.|.|..|.....++..+. +|.+|||+|||+|+++++++.....+|+++|+|+.+++.
T Consensus 504 ~e~g~~f~----v~~~~~~~tG~flDqr~~R~~~~~~~---~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~ 576 (702)
T PRK11783 504 TEYGAKLL----VNLTDYLDTGLFLDHRPTRRMIGQMA---KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEW 576 (702)
T ss_pred EECCEEEE----EEcCCCCcceECHHHHHHHHHHHHhc---CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHH
Confidence 34555553 33345677899999988887777654 478999999999999999997532589999999999999
Q ss_pred HHHHHHHcCCc---eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHH
Q psy15212 171 ISENLKRLNLK---ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDI 247 (329)
Q Consensus 171 l~~n~~~~g~~---v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~ 247 (329)
+++|++.+|+. ++++++|+.++. .. ..++||.|++|||+.+.+- ...+.
T Consensus 577 a~~N~~~ng~~~~~v~~i~~D~~~~l----------------~~-~~~~fDlIilDPP~f~~~~-----------~~~~~ 628 (702)
T PRK11783 577 AERNFALNGLSGRQHRLIQADCLAWL----------------KE-AREQFDLIFIDPPTFSNSK-----------RMEDS 628 (702)
T ss_pred HHHHHHHhCCCccceEEEEccHHHHH----------------HH-cCCCcCEEEECCCCCCCCC-----------ccchh
Confidence 99999999884 789999987642 11 1458999999999875421 11122
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCcccc
Q psy15212 248 KKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEES 283 (329)
Q Consensus 248 ~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~En 283 (329)
....+.+.+++..+.++|+|||.+++++|+-+....
T Consensus 629 ~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~ 664 (702)
T PRK11783 629 FDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMD 664 (702)
T ss_pred hhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChh
Confidence 334455778899999999999999999998665543
No 18
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.66 E-value=3.2e-16 Score=125.87 Aligned_cols=114 Identities=25% Similarity=0.352 Sum_probs=90.1
Q ss_pred CCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhccccccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
|.+|||+|||+|..+.++++....+++++|+++..++.++.|+...++. ++++++|+.... .
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~----------------~ 64 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLP----------------E 64 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHH----------------H
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhch----------------h
Confidence 6799999999999999999886579999999999999999999999884 899999988764 2
Q ss_pred ccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 211 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
....++||.|++|||+........ ........+++++.++|+|||.+++.+|
T Consensus 65 ~~~~~~~D~Iv~npP~~~~~~~~~--------------~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 65 PLPDGKFDLIVTNPPYGPRSGDKA--------------ALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TCTTT-EEEEEE--STTSBTT------------------GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hccCceeEEEEECCCCccccccch--------------hhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 235689999999999974321110 1111456789999999999999999876
No 19
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.65 E-value=2.7e-15 Score=130.14 Aligned_cols=156 Identities=20% Similarity=0.138 Sum_probs=111.8
Q ss_pred chhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhh
Q psy15212 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKL 197 (329)
Q Consensus 118 d~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~ 197 (329)
...+.++...+...++.+|||+|||+|..+..+++... +|+++|+++.+++.+++|++.+++.++++.+|.....
T Consensus 5 ~~d~~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---- 79 (179)
T TIGR00537 5 AEDSLLLEANLRELKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV---- 79 (179)
T ss_pred CccHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc----
Confidence 34455666666666778999999999999999998655 9999999999999999999998888888888876532
Q ss_pred hhhhcccccccccccCCCCCCEEEEccCCcccc-ccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 198 YIDINKKTNNRFRFYKNKYFDRILADLPCTGSG-VVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G-~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
.++||.|+++||+.... ..+.++...+.+.... .-...+.++|+.+.++|+|||++++.++
T Consensus 80 ----------------~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~Lk~gG~~~~~~~ 141 (179)
T TIGR00537 80 ----------------RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGK--DGRKVIDRFLDELPEILKEGGRVQLIQS 141 (179)
T ss_pred ----------------CCcccEEEECCCCCCCcchhcccchhhhhhhcCC--chHHHHHHHHHhHHHhhCCCCEEEEEEe
Confidence 24899999999985332 1111111111111000 1123467899999999999999999887
Q ss_pred CCCccccHHHHHHHHhhCCCcEEe
Q psy15212 277 SLWFEESEEQAIIFSKNHKDSIRL 300 (329)
Q Consensus 277 S~~~~Ene~vv~~~l~~~~~~~~~ 300 (329)
+.. +...+..++++. ++...
T Consensus 142 ~~~---~~~~~~~~l~~~-gf~~~ 161 (179)
T TIGR00537 142 SLN---GEPDTFDKLDER-GFRYE 161 (179)
T ss_pred ccC---ChHHHHHHHHhC-CCeEE
Confidence 644 355666777765 45443
No 20
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.65 E-value=3.5e-15 Score=134.27 Aligned_cols=151 Identities=22% Similarity=0.225 Sum_probs=115.1
Q ss_pred hHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhh
Q psy15212 120 AAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKK 196 (329)
Q Consensus 120 ~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~ 196 (329)
.++|.+.+..+....+|||+|||.|..++.+|++.. .+|++||+++.+.+.+++|++.+++. ++++++|+..+.
T Consensus 32 DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~--- 108 (248)
T COG4123 32 DAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFL--- 108 (248)
T ss_pred HHHHHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhh---
Confidence 377888888877788999999999999999999866 89999999999999999999999886 899999998875
Q ss_pred hhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 197 LYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
......+||.|+||||+...|.- .+++-.... ........-.++++.|.++||+||++.+.
T Consensus 109 -------------~~~~~~~fD~Ii~NPPyf~~~~~-~~~~~~~~~---Ar~e~~~~le~~i~~a~~~lk~~G~l~~V-- 169 (248)
T COG4123 109 -------------KALVFASFDLIICNPPYFKQGSR-LNENPLRAI---ARHEITLDLEDLIRAAAKLLKPGGRLAFV-- 169 (248)
T ss_pred -------------hcccccccCEEEeCCCCCCCccc-cCcChhhhh---hhhhhcCCHHHHHHHHHHHccCCCEEEEE--
Confidence 22233579999999999877765 222211000 00001112356899999999999999874
Q ss_pred CCCccccHHHHHHHHhhC
Q psy15212 277 SLWFEESEEQAIIFSKNH 294 (329)
Q Consensus 277 S~~~~Ene~vv~~~l~~~ 294 (329)
++.|.-.-+-..+.++
T Consensus 170 --~r~erl~ei~~~l~~~ 185 (248)
T COG4123 170 --HRPERLAEIIELLKSY 185 (248)
T ss_pred --ecHHHHHHHHHHHHhc
Confidence 7777666666666664
No 21
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.64 E-value=6.7e-16 Score=132.98 Aligned_cols=123 Identities=25% Similarity=0.319 Sum_probs=98.5
Q ss_pred chhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchh
Q psy15212 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLK 195 (329)
Q Consensus 118 d~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~ 195 (329)
|+++.+....+...++.+|||+|||+|..++.+++..+ .+|+++|+++..++.+++|++.+++. ++++..|.....
T Consensus 17 d~~t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~-- 94 (170)
T PF05175_consen 17 DAGTRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEAL-- 94 (170)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTC--
T ss_pred CHHHHHHHHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccc--
Confidence 67888888877666788999999999999999999877 48999999999999999999999998 999999987643
Q ss_pred hhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 196 KLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
..++||.|++|||.... . ......+.++++.|.++|+|||.+++..
T Consensus 95 -----------------~~~~fD~Iv~NPP~~~~--------------~---~~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 95 -----------------PDGKFDLIVSNPPFHAG--------------G---DDGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp -----------------CTTCEEEEEE---SBTT--------------S---HCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -----------------cccceeEEEEccchhcc--------------c---ccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 35799999999994311 1 1122346789999999999999886643
Q ss_pred C
Q psy15212 276 C 276 (329)
Q Consensus 276 C 276 (329)
-
T Consensus 141 ~ 141 (170)
T PF05175_consen 141 N 141 (170)
T ss_dssp E
T ss_pred e
Confidence 3
No 22
>PRK14967 putative methyltransferase; Provisional
Probab=99.64 E-value=5.1e-15 Score=132.98 Aligned_cols=143 Identities=21% Similarity=0.291 Sum_probs=103.9
Q ss_pred ceEEEechhHHHHhhhc---CCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecC
Q psy15212 112 GFCSIQDAAAQLAAPLL---DIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSD 188 (329)
Q Consensus 112 G~~~~Qd~~s~l~~~~l---~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D 188 (329)
|.+..|..+ .+....+ .+.++++|||+|||+|..+..++.....+|+++|+++.+++.+++|++..++.+.++.+|
T Consensus 14 g~~~p~~ds-~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d 92 (223)
T PRK14967 14 GVYRPQEDT-QLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGD 92 (223)
T ss_pred CCcCCCCcH-HHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECc
Confidence 444555544 3343333 467889999999999999999987533599999999999999999999988888888888
Q ss_pred ccccchhhhhhhhcccccccccccCCCCCCEEEEccCCc---cccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcC
Q psy15212 189 ISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCT---GSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKML 265 (329)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCs---g~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~L 265 (329)
+.... ..+.||.|++|||+. ..+...+.|...|....+. ...+..+++.+.++|
T Consensus 93 ~~~~~-------------------~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~a~~~L 149 (223)
T PRK14967 93 WARAV-------------------EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDG----RAVLDRLCDAAPALL 149 (223)
T ss_pred hhhhc-------------------cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcH----HHHHHHHHHHHHHhc
Confidence 76532 346899999999864 3333344444444322211 234577999999999
Q ss_pred CCCCEEEEEcCCC
Q psy15212 266 KPGGKLLFVTCSL 278 (329)
Q Consensus 266 kpgG~lvysTCS~ 278 (329)
|+||++++.+.+.
T Consensus 150 k~gG~l~~~~~~~ 162 (223)
T PRK14967 150 APGGSLLLVQSEL 162 (223)
T ss_pred CCCcEEEEEEecc
Confidence 9999999865444
No 23
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.64 E-value=3e-15 Score=136.84 Aligned_cols=140 Identities=18% Similarity=0.173 Sum_probs=103.2
Q ss_pred CCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRF 211 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 211 (329)
+.+|||+|||+|.+++.+++..+ .+|+++|+|+.+++.+++|++.++. +++.+|+.+.. ..
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~--~~~~~D~~~~l----------------~~ 148 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGG--TVHEGDLYDAL----------------PT 148 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--EEEEeechhhc----------------ch
Confidence 45899999999999999998766 6999999999999999999998874 67888876532 00
Q ss_pred cCCCCCCEEEEccCCcccccccc-CCCCcccCChhHH---HHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHH
Q psy15212 212 YKNKYFDRILADLPCTGSGVVRR-NPDIPWLRRKNDI---KKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQA 287 (329)
Q Consensus 212 ~~~~~fD~Vl~D~PCsg~G~~~~-~p~~~~~~~~~~~---~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv 287 (329)
...++||.|++||||..++.+.+ .|+.++......+ ......++++++.+.++|+|||++++.+.. ...++ +
T Consensus 149 ~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~---~~~~~-v 224 (251)
T TIGR03704 149 ALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE---RQAPL-A 224 (251)
T ss_pred hcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc---chHHH-H
Confidence 01257999999999998887765 4444432211111 134567889999999999999999998653 33334 4
Q ss_pred HHHHhhC
Q psy15212 288 IIFSKNH 294 (329)
Q Consensus 288 ~~~l~~~ 294 (329)
...++++
T Consensus 225 ~~~l~~~ 231 (251)
T TIGR03704 225 VEAFARA 231 (251)
T ss_pred HHHHHHC
Confidence 4455544
No 24
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.64 E-value=2.2e-15 Score=142.99 Aligned_cols=122 Identities=20% Similarity=0.213 Sum_probs=99.2
Q ss_pred hhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhcc
Q psy15212 125 APLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINK 203 (329)
Q Consensus 125 ~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~ 203 (329)
+.+.++++|+.|||+|||+|+.+..++. .+..++|+|+++.+++.++.|++++|+. +.++.+|+.+++
T Consensus 175 ~~l~~~~~g~~vLDp~cGtG~~lieaa~-~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~---------- 243 (329)
T TIGR01177 175 VNLARVTEGDRVLDPFCGTGGFLIEAGL-MGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLP---------- 243 (329)
T ss_pred HHHhCCCCcCEEEECCCCCCHHHHHHHH-hCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCC----------
Confidence 3445678999999999999999988765 4679999999999999999999999987 789999998865
Q ss_pred cccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCC
Q psy15212 204 KTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSL 278 (329)
Q Consensus 204 ~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~ 278 (329)
...+.||.|++||||....... ......++.++|+.+.+.|+|||++++.+++-
T Consensus 244 --------~~~~~~D~Iv~dPPyg~~~~~~-------------~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 244 --------LSSESVDAIATDPPYGRSTTAA-------------GDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred --------cccCCCCEEEECCCCcCccccc-------------CCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 2346899999999997422111 01234567889999999999999999998764
No 25
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.64 E-value=9.7e-16 Score=141.56 Aligned_cols=146 Identities=27% Similarity=0.332 Sum_probs=106.8
Q ss_pred CCCCcccccceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 103 ISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 103 ~~~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
+.-....+.|.|..|.....++.... .|.+|||++|.+|+++++++. .| .+|++||.|...++.+++|++.+|++
T Consensus 97 v~l~~gqktGlFlDqR~nR~~v~~~~---~gkrvLnlFsYTGgfsv~Aa~-gGA~~v~~VD~S~~al~~a~~N~~lNg~~ 172 (286)
T PF10672_consen 97 VDLTDGQKTGLFLDQRENRKWVRKYA---KGKRVLNLFSYTGGFSVAAAA-GGAKEVVSVDSSKRALEWAKENAALNGLD 172 (286)
T ss_dssp EESSSSSSTSS-GGGHHHHHHHHHHC---TTCEEEEET-TTTHHHHHHHH-TTESEEEEEES-HHHHHHHHHHHHHTT-C
T ss_pred EEcCCCCcceEcHHHHhhHHHHHHHc---CCCceEEecCCCCHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 34445678999999999999887764 488999999999999999885 45 69999999999999999999999975
Q ss_pred ---eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHH
Q psy15212 182 ---ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKIL 258 (329)
Q Consensus 182 ---v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL 258 (329)
++++.+|+.+.- ..+ ...++||+|++|||..+-|. + .+ .+-..+++
T Consensus 173 ~~~~~~~~~Dvf~~l-~~~--------------~~~~~fD~IIlDPPsF~k~~--------~-----~~---~~~y~~L~ 221 (286)
T PF10672_consen 173 LDRHRFIQGDVFKFL-KRL--------------KKGGRFDLIILDPPSFAKSK--------F-----DL---ERDYKKLL 221 (286)
T ss_dssp CTCEEEEES-HHHHH-HHH--------------HHTT-EEEEEE--SSEESST--------C-----EH---HHHHHHHH
T ss_pred ccceEEEecCHHHHH-HHH--------------hcCCCCCEEEECCCCCCCCH--------H-----HH---HHHHHHHH
Confidence 789999987642 111 12468999999999664321 1 11 23466899
Q ss_pred HHHHhcCCCCCEEEEEcCCCCcccc
Q psy15212 259 NNLWKMLKPGGKLLFVTCSLWFEES 283 (329)
Q Consensus 259 ~~a~~~LkpgG~lvysTCS~~~~En 283 (329)
..++++|+|||.|+.+|||-+-..+
T Consensus 222 ~~a~~ll~~gG~l~~~scs~~i~~~ 246 (286)
T PF10672_consen 222 RRAMKLLKPGGLLLTCSCSHHISPD 246 (286)
T ss_dssp HHHHHTEEEEEEEEEEE--TTS-HH
T ss_pred HHHHHhcCCCCEEEEEcCCcccCHH
Confidence 9999999999999999999776654
No 26
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.62 E-value=3.7e-15 Score=118.65 Aligned_cols=108 Identities=24% Similarity=0.338 Sum_probs=85.0
Q ss_pred CCCeEEeecCCCchHHHHHHHh-CCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCc-cccchhhhhhhhcccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEI-ADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDI-SKINLKKLYIDINKKTNN 207 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~-~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~-~~~~~~~~~~~~~~~~~~ 207 (329)
||.+|||+|||+|..+..++++ .+.+|+|+|+|+.+++.+++++.+.+.. ++++++|+ ....
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-------------- 66 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD-------------- 66 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT--------------
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc--------------
Confidence 6889999999999999999985 3479999999999999999999766664 89999999 2222
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
..+.||.|+++. .+.... ... ..+.++|+++.+.|+|||++++++|
T Consensus 67 -----~~~~~D~v~~~~-~~~~~~----------------~~~-~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 67 -----FLEPFDLVICSG-FTLHFL----------------LPL-DERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp -----TSSCEEEEEECS-GSGGGC----------------CHH-HHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred -----cCCCCCEEEECC-Cccccc----------------cch-hHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 246799999765 211101 111 4466789999999999999999998
No 27
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.62 E-value=1e-14 Score=134.60 Aligned_cols=224 Identities=17% Similarity=0.157 Sum_probs=138.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhCCCCCeeEEEcCCCC-CHHHH---HHHHHH--CCCeeE------EeCCceEEEcCC
Q psy15212 33 IWWINQVKITYPNFFQWKNILDVGHKKPPLTLRINQRKT-TLISY---NKLLKK--SGLETT------IIGPLAIKLHTP 100 (329)
Q Consensus 33 ~w~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~RvN~~k~-~~~~~---~~~l~~--~g~~~~------~~~~~~~~~~~~ 100 (329)
.|..++|.+ +. .+++-++.......+.+++.|..+. +.+.. .+.+.+ .|.+.. ++....+.+.
T Consensus 9 ~~~~~~l~~--~~-~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~g~~~f~~~~~~~~-- 83 (275)
T PRK09328 9 REATARLAS--PR-LDAELLLAHVLGLSRTDLLLNPEEELTPEELERFRALVARRAAGEPLQYILGEAEFWGLDFKVS-- 83 (275)
T ss_pred HHHHHHHhC--cH-HHHHHHHHHHHCcCHHHHhhcccCCCCHHHHHHHHHHHHHHHcCCCHHHHceeceEcCcEEEEC--
Confidence 566666765 54 5677788888888888898887664 44332 222222 222211 0000011111
Q ss_pred CCCCCCcccccceEEEechhHHHHhhh---cCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHH
Q psy15212 101 ISISKIPKFFNGFCSIQDAAAQLAAPL---LDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLK 176 (329)
Q Consensus 101 ~~~~~~~~~~~G~~~~Qd~~s~l~~~~---l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~ 176 (329)
.+.+.....+..++-.+ +...++.+|||+|||+|..+..++...+ .+++++|+++.+++.+++|++
T Consensus 84 ----------~~~lipr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~ 153 (275)
T PRK09328 84 ----------PGVLIPRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK 153 (275)
T ss_pred ----------CCceeCCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
Confidence 11122222222222222 2355678999999999999999998875 799999999999999999998
Q ss_pred HcCC-ceEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCcccccccc-CCCCcccCChhHH---HHHH
Q psy15212 177 RLNL-KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRR-NPDIPWLRRKNDI---KKLS 251 (329)
Q Consensus 177 ~~g~-~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~-~p~~~~~~~~~~~---~~l~ 251 (329)
.... .+.++.+|+.... ..++||+|++||||...+.+.. .+++++......+ ....
T Consensus 154 ~~~~~~i~~~~~d~~~~~-------------------~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~ 214 (275)
T PRK09328 154 HGLGARVEFLQGDWFEPL-------------------PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGL 214 (275)
T ss_pred hCCCCcEEEEEccccCcC-------------------CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHH
Confidence 3222 3889999885432 2468999999999988776542 2333211110011 1234
Q ss_pred HHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHHHHHhhC
Q psy15212 252 KYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH 294 (329)
Q Consensus 252 ~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~~ 294 (329)
..+..+++.+.++|+|||++++.+. .... +.+..++...
T Consensus 215 ~~~~~~~~~~~~~Lk~gG~l~~e~g---~~~~-~~~~~~l~~~ 253 (275)
T PRK09328 215 DFYRRIIEQAPRYLKPGGWLLLEIG---YDQG-EAVRALLAAA 253 (275)
T ss_pred HHHHHHHHHHHHhcccCCEEEEEEC---chHH-HHHHHHHHhC
Confidence 5677899999999999999998542 2222 3455566554
No 28
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.57 E-value=2.7e-14 Score=128.44 Aligned_cols=121 Identities=23% Similarity=0.426 Sum_probs=97.1
Q ss_pred HHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhh
Q psy15212 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLY 198 (329)
Q Consensus 121 s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~ 198 (329)
....+..+.+.+|++|||+|||+|-.+..+++..+ ++|+++|+|+.||+.+++.+...|.. ++++++|+.+++
T Consensus 40 r~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP----- 114 (238)
T COG2226 40 RRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP----- 114 (238)
T ss_pred HHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC-----
Confidence 44455566666999999999999999999999887 89999999999999999999998877 999999999987
Q ss_pred hhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCC
Q psy15212 199 IDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSL 278 (329)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~ 278 (329)
+++++||.|.+ +.|. ++.. ...+.|+++.|.|||||+++.- .+
T Consensus 115 -------------f~D~sFD~vt~-----~fgl----------------rnv~-d~~~aL~E~~RVlKpgG~~~vl--e~ 157 (238)
T COG2226 115 -------------FPDNSFDAVTI-----SFGL----------------RNVT-DIDKALKEMYRVLKPGGRLLVL--EF 157 (238)
T ss_pred -------------CCCCccCEEEe-----eehh----------------hcCC-CHHHHHHHHHHhhcCCeEEEEE--Ec
Confidence 57899999985 2222 1111 1345799999999999987753 44
Q ss_pred Ccccc
Q psy15212 279 WFEES 283 (329)
Q Consensus 279 ~~~En 283 (329)
++-++
T Consensus 158 ~~p~~ 162 (238)
T COG2226 158 SKPDN 162 (238)
T ss_pred CCCCc
Confidence 44445
No 29
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.56 E-value=1.8e-14 Score=134.63 Aligned_cols=125 Identities=21% Similarity=0.290 Sum_probs=103.0
Q ss_pred hHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEec-Cccccchhhh
Q psy15212 120 AAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-ATLILS-DISKINLKKL 197 (329)
Q Consensus 120 ~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~-D~~~~~~~~~ 197 (329)
-|...+.+..+++|+.|||.+||+||+...+. ++|++++|+|++..|++.++.|++.+++. ..+... |+++++
T Consensus 185 lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEag-l~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lp---- 259 (347)
T COG1041 185 LARAMVNLARVKRGELVLDPFCGTGGILIEAG-LMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLP---- 259 (347)
T ss_pred HHHHHHHHhccccCCEeecCcCCccHHHHhhh-hcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCC----
Confidence 35666777789999999999999999988776 57889999999999999999999999987 555555 999886
Q ss_pred hhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 198 YIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
+.+..||.|++|||+.-+-. .....+.++..++|+.+.+.||+||++|+.+-
T Consensus 260 --------------l~~~~vdaIatDPPYGrst~-------------~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 260 --------------LRDNSVDAIATDPPYGRSTK-------------IKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred --------------CCCCccceEEecCCCCcccc-------------cccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 34457999999999862211 12223667789999999999999999999865
No 30
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=2.9e-13 Score=115.95 Aligned_cols=140 Identities=17% Similarity=0.202 Sum_probs=111.0
Q ss_pred cccceEEEechhHHHHhhh--cCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEe
Q psy15212 109 FFNGFCSIQDAAAQLAAPL--LDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLIL 186 (329)
Q Consensus 109 ~~~G~~~~Qd~~s~l~~~~--l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~ 186 (329)
+.+-+.+.-+.++.++..+ .+.-.|..|+|+|||+|..++.++-+...+|+|+|++++.++.+++|..+++..+.++.
T Consensus 20 ~LEQY~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~ 99 (198)
T COG2263 20 GLEQYRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVV 99 (198)
T ss_pred cceecCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEE
Confidence 3344444455566555444 34556778999999999999998865548999999999999999999999777799999
Q ss_pred cCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCC
Q psy15212 187 SDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLK 266 (329)
Q Consensus 187 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~Lk 266 (329)
+|++++. ..||.|+.||| .|..++|+| +.+|..|++..
T Consensus 100 ~dv~~~~---------------------~~~dtvimNPP---FG~~~rhaD-----------------r~Fl~~Ale~s- 137 (198)
T COG2263 100 ADVSDFR---------------------GKFDTVIMNPP---FGSQRRHAD-----------------RPFLLKALEIS- 137 (198)
T ss_pred cchhhcC---------------------CccceEEECCC---CccccccCC-----------------HHHHHHHHHhh-
Confidence 9999875 67999999999 566677776 35678888774
Q ss_pred CCCEEEEEcCCCCccccHHHHHHHHhhCCC
Q psy15212 267 PGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296 (329)
Q Consensus 267 pgG~lvysTCS~~~~Ene~vv~~~l~~~~~ 296 (329)
..||| +|..-+.+.++++...+.+
T Consensus 138 ---~vVYs---iH~a~~~~f~~~~~~~~G~ 161 (198)
T COG2263 138 ---DVVYS---IHKAGSRDFVEKFAADLGG 161 (198)
T ss_pred ---heEEE---eeccccHHHHHHHHHhcCC
Confidence 68885 8888899999999888753
No 31
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.52 E-value=4.1e-13 Score=115.33 Aligned_cols=130 Identities=22% Similarity=0.285 Sum_probs=104.6
Q ss_pred hHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhh
Q psy15212 120 AAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKL 197 (329)
Q Consensus 120 ~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~ 197 (329)
-..+....|.+++|++++|+|||+|+.++.+|...+ ++|+|+|.++++++.+++|++++|++ ++++.+|+-+.-
T Consensus 22 IRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L---- 97 (187)
T COG2242 22 IRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEAL---- 97 (187)
T ss_pred HHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhh----
Confidence 345556678899999999999999999999995444 89999999999999999999999997 899999987653
Q ss_pred hhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 198 YIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
. ....||.|++. |.|. ...+|+.++..|||||+||.-.-+
T Consensus 98 ------------~--~~~~~daiFIG----Gg~~----------------------i~~ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 98 ------------P--DLPSPDAIFIG----GGGN----------------------IEEILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred ------------c--CCCCCCEEEEC----CCCC----------------------HHHHHHHHHHHcCcCCeEEEEeec
Confidence 1 11279999973 2222 356899999999999999975443
Q ss_pred CCccccHHHHHHHHhhCCC
Q psy15212 278 LWFEESEEQAIIFSKNHKD 296 (329)
Q Consensus 278 ~~~~Ene~vv~~~l~~~~~ 296 (329)
.||+...-..++++..
T Consensus 138 ---lE~~~~a~~~~~~~g~ 153 (187)
T COG2242 138 ---LETLAKALEALEQLGG 153 (187)
T ss_pred ---HHHHHHHHHHHHHcCC
Confidence 6778877777777744
No 32
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.52 E-value=2e-13 Score=128.30 Aligned_cols=118 Identities=20% Similarity=0.248 Sum_probs=92.7
Q ss_pred CeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhccccccccc
Q psy15212 134 MYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 134 ~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
.+|||+|||+|..+..++...+ .+|+|+|+|+.+++.+++|++++++. ++++++|+.+..
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l----------------- 197 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAAL----------------- 197 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhC-----------------
Confidence 6899999999999999998776 79999999999999999999999874 889999976432
Q ss_pred ccCCCCCCEEEEccCCcccccccc-------CCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 211 FYKNKYFDRILADLPCTGSGVVRR-------NPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~PCsg~G~~~~-------~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
..++||.|++||||.+.+.+.. .|...+.-.. .-....+.+++.+.++|+|||++++.
T Consensus 198 --~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~----dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 198 --PGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGD----DGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred --CCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCC----chHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 2357999999999988765432 2221111111 11245678999999999999999875
No 33
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.52 E-value=1.8e-13 Score=122.30 Aligned_cols=109 Identities=24% Similarity=0.314 Sum_probs=89.1
Q ss_pred HHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhh
Q psy15212 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKL 197 (329)
Q Consensus 121 s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~ 197 (329)
......++++++|++|||+|||+|..+..+++..+ ++|+++|+++.+++.+++|++++|+. ++++.+|+....
T Consensus 66 ~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~---- 141 (215)
T TIGR00080 66 VAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGW---- 141 (215)
T ss_pred HHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCC----
Confidence 34555677889999999999999999999998865 67999999999999999999999986 899999987642
Q ss_pred hhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 198 YIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
.....||+|++++++.. +.+...+.|+|||+|+...
T Consensus 142 --------------~~~~~fD~Ii~~~~~~~----------------------------~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 142 --------------EPLAPYDRIYVTAAGPK----------------------------IPEALIDQLKEGGILVMPV 177 (215)
T ss_pred --------------cccCCCCEEEEcCCccc----------------------------ccHHHHHhcCcCcEEEEEE
Confidence 12358999999987541 2334567799999999763
No 34
>PRK14968 putative methyltransferase; Provisional
Probab=99.52 E-value=6e-13 Score=115.50 Aligned_cols=155 Identities=21% Similarity=0.164 Sum_probs=106.9
Q ss_pred HHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc---eEEEecCccccchhhh
Q psy15212 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK---ATLILSDISKINLKKL 197 (329)
Q Consensus 121 s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~---v~~~~~D~~~~~~~~~ 197 (329)
+.+....+...++.+|||+|||+|..+..++.. +.+|+++|+++.+++.+++++...++. +.++.+|..+..
T Consensus 12 ~~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~---- 86 (188)
T PRK14968 12 SFLLAENAVDKKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPF---- 86 (188)
T ss_pred HHHHHHhhhccCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccc----
Confidence 455555555678889999999999999999987 679999999999999999999988875 778888876532
Q ss_pred hhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 198 YIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
.+..||.|++|||+...+-..+..+ .|................+++.+.++|||||.+++..++
T Consensus 87 ---------------~~~~~d~vi~n~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~ 150 (188)
T PRK14968 87 ---------------RGDKFDVILFNPPYLPTEEEEEWDD-WLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS 150 (188)
T ss_pred ---------------cccCceEEEECCCcCCCCchhhhhh-hhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 2347999999999864332111100 000000000011234567899999999999999988777
Q ss_pred CCccccHHHHHHHHhhCCCcEEe
Q psy15212 278 LWFEESEEQAIIFSKNHKDSIRL 300 (329)
Q Consensus 278 ~~~~Ene~vv~~~l~~~~~~~~~ 300 (329)
+... +.+..++++. +++..
T Consensus 151 ~~~~---~~l~~~~~~~-g~~~~ 169 (188)
T PRK14968 151 LTGE---DEVLEYLEKL-GFEAE 169 (188)
T ss_pred cCCH---HHHHHHHHHC-CCeee
Confidence 5432 3345566655 45433
No 35
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.52 E-value=5.7e-14 Score=126.91 Aligned_cols=129 Identities=26% Similarity=0.389 Sum_probs=87.5
Q ss_pred HHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhh
Q psy15212 123 LAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYI 199 (329)
Q Consensus 123 l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~ 199 (329)
.+...+.+++|++|||+|||+|-.+..+++..+ ++|+++|+|+.+++.+++++++.+.. ++++++|+.+++
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp------ 111 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLP------ 111 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--------
T ss_pred HHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhc------
Confidence 445556788999999999999999999998765 79999999999999999999998875 999999999987
Q ss_pred hhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCC
Q psy15212 200 DINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLW 279 (329)
Q Consensus 200 ~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~ 279 (329)
+.+++||.|.+ +.|. +.-|+ +.+.|+++.+.|||||+++.... +
T Consensus 112 ------------~~d~sfD~v~~-----~fgl-rn~~d----------------~~~~l~E~~RVLkPGG~l~ile~--~ 155 (233)
T PF01209_consen 112 ------------FPDNSFDAVTC-----SFGL-RNFPD----------------RERALREMYRVLKPGGRLVILEF--S 155 (233)
T ss_dssp ------------S-TT-EEEEEE-----ES-G-GG-SS----------------HHHHHHHHHHHEEEEEEEEEEEE--E
T ss_pred ------------CCCCceeEEEH-----HhhH-HhhCC----------------HHHHHHHHHHHcCCCeEEEEeec--c
Confidence 46789999984 2332 22222 34579999999999999987543 3
Q ss_pred ccccHHHHHHHHhhC
Q psy15212 280 FEESEEQAIIFSKNH 294 (329)
Q Consensus 280 ~~Ene~vv~~~l~~~ 294 (329)
..+|. .+..+..-+
T Consensus 156 ~p~~~-~~~~~~~~y 169 (233)
T PF01209_consen 156 KPRNP-LLRALYKFY 169 (233)
T ss_dssp B-SSH-HHHHHHHH-
T ss_pred CCCCc-hhhceeeee
Confidence 44453 455555544
No 36
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.52 E-value=6.7e-13 Score=127.95 Aligned_cols=180 Identities=13% Similarity=0.113 Sum_probs=118.1
Q ss_pred EechhHHHHhhhcC-CCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 116 IQDAAAQLAAPLLD-IRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 116 ~Qd~~s~l~~~~l~-~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
....+..++..++. +.++.+|||+|||+|..+..++...+ .+|+|+|+|+.+++.+++|+++++.+++++.+|+....
T Consensus 234 PRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~ 313 (423)
T PRK14966 234 PRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTD 313 (423)
T ss_pred CCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccc
Confidence 33444455554443 45667999999999999999987655 79999999999999999999999888899999986532
Q ss_pred hhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCC-CCcccCChhH----HHHHHHHHHHHHHHHHhcCCCC
Q psy15212 194 LKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP-DIPWLRRKND----IKKLSKYSCKILNNLWKMLKPG 268 (329)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p-~~~~~~~~~~----~~~l~~~q~~lL~~a~~~Lkpg 268 (329)
.....+||.|++|||+...+-....+ +.++ .+.. ...-....+++++.+.+.|+||
T Consensus 314 -----------------l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~--EP~~AL~gG~dGL~~yr~Ii~~a~~~Lkpg 374 (423)
T PRK14966 314 -----------------MPSEGKWDIIVSNPPYIENGDKHLLQGDLRF--EPQIALTDFSDGLSCIRTLAQGAPDRLAEG 374 (423)
T ss_pred -----------------cccCCCccEEEECCCCCCcchhhhcchhhhc--CHHHHhhCCCchHHHHHHHHHHHHHhcCCC
Confidence 01235799999999997665432221 1111 1100 0112234678999999999999
Q ss_pred CEEEEEcCCCCccccHHHHHHHHhhCCCcEEecCCCcccCCCCCCCCCCeEEEEEEEe
Q psy15212 269 GKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 326 (329)
Q Consensus 269 G~lvysTCS~~~~Ene~vv~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~gff~a~l~k 326 (329)
|.+++.. .. ...+.+..++++. ++..+. +.++. .+.+=|.+++..|
T Consensus 375 G~lilEi---G~-~Q~e~V~~ll~~~-Gf~~v~----v~kDl---~G~dR~v~~~~~~ 420 (423)
T PRK14966 375 GFLLLEH---GF-DQGAAVRGVLAEN-GFSGVE----TLPDL---AGLDRVTLGKYMK 420 (423)
T ss_pred cEEEEEE---Cc-cHHHHHHHHHHHC-CCcEEE----EEEcC---CCCcEEEEEEEhh
Confidence 9987642 23 3334555566554 343322 23443 4556666655433
No 37
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.51 E-value=2.1e-13 Score=129.78 Aligned_cols=129 Identities=20% Similarity=0.228 Sum_probs=102.3
Q ss_pred echhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchh
Q psy15212 117 QDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLK 195 (329)
Q Consensus 117 Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~ 195 (329)
.|.+|.+....+......+|||+|||+|..+..++++.+ .+|+++|+|+.+++.+++|++++++..+++..|....
T Consensus 181 lD~gt~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~--- 257 (342)
T PRK09489 181 LDVGSQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD--- 257 (342)
T ss_pred CCHHHHHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc---
Confidence 466777777777655566999999999999999998876 6999999999999999999999998877787886542
Q ss_pred hhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 196 KLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
..+.||.|++|||.- .|. ......-.++++.+.+.|||||.|++.+
T Consensus 258 -----------------~~~~fDlIvsNPPFH-~g~----------------~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 258 -----------------IKGRFDMIISNPPFH-DGI----------------QTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred -----------------cCCCccEEEECCCcc-CCc----------------cccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 146899999999953 111 0001123568999999999999999999
Q ss_pred CCCCccc
Q psy15212 276 CSLWFEE 282 (329)
Q Consensus 276 CS~~~~E 282 (329)
.++.+-+
T Consensus 304 n~~l~y~ 310 (342)
T PRK09489 304 NAFLPYP 310 (342)
T ss_pred eCCCChH
Confidence 9888755
No 38
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.51 E-value=1.1e-12 Score=122.13 Aligned_cols=124 Identities=19% Similarity=0.171 Sum_probs=94.7
Q ss_pred CeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhccccccccc
Q psy15212 134 MYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 134 ~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
.+|||+|||+|..++.++...+ .+|+|+|+|+.+++.+++|++++++. ++++.+|..+..
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~----------------- 178 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPL----------------- 178 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccC-----------------
Confidence 6899999999999999998776 79999999999999999999999985 889999976532
Q ss_pred ccCCCCCCEEEEccCCccccccccCCCCcccCChhH-H---HHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 211 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKND-I---KKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~-~---~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
...+||+|++|||+.....+...++... ..+.. + ..-....+.++..+.++|+|||.+++.++.
T Consensus 179 --~~~~fDlIvsNPPyi~~~~~~~~~~~~~-~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~ 246 (284)
T TIGR00536 179 --AGQKIDIIVSNPPYIDEEDLADLPNVVR-FEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN 246 (284)
T ss_pred --cCCCccEEEECCCCCCcchhhcCCcccc-cCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc
Confidence 2347999999999986654332232211 01100 0 112346788999999999999999987653
No 39
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.51 E-value=4.7e-13 Score=121.65 Aligned_cols=142 Identities=20% Similarity=0.252 Sum_probs=101.6
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhcccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
.+.+|||+|||+|..+..+++..+ ..++++|+++.+++.++++++..++. ++++.+|+....
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~---------------- 150 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPL---------------- 150 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccC----------------
Confidence 345899999999999999998766 69999999999999999999999987 889999986532
Q ss_pred cccCCCCCCEEEEccCCccccccccCC-CCcccCChhHH----HHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccH
Q psy15212 210 RFYKNKYFDRILADLPCTGSGVVRRNP-DIPWLRRKNDI----KKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESE 284 (329)
Q Consensus 210 ~~~~~~~fD~Vl~D~PCsg~G~~~~~p-~~~~~~~~~~~----~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene 284 (329)
..++||.|++|||+...+.+.... +.+. ..+... ..-......+++.+.++|+|||.+++.. + .. ..
T Consensus 151 ---~~~~fD~Vi~npPy~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~-~--~~-~~ 222 (251)
T TIGR03534 151 ---PGGKFDLIVSNPPYIPEADIHLLDPEVRF-HEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI-G--YD-QG 222 (251)
T ss_pred ---cCCceeEEEECCCCCchhhhhhcChhhhh-cCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE-C--cc-HH
Confidence 346899999999999776544321 1110 000000 0112334578999999999999999863 2 22 23
Q ss_pred HHHHHHHhhCCCcE
Q psy15212 285 EQAIIFSKNHKDSI 298 (329)
Q Consensus 285 ~vv~~~l~~~~~~~ 298 (329)
+.+..+++++ +++
T Consensus 223 ~~~~~~l~~~-gf~ 235 (251)
T TIGR03534 223 EAVRALFEAA-GFA 235 (251)
T ss_pred HHHHHHHHhC-CCC
Confidence 4455556655 343
No 40
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.51 E-value=5.6e-13 Score=116.40 Aligned_cols=131 Identities=18% Similarity=0.243 Sum_probs=101.2
Q ss_pred EechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccc
Q psy15212 116 IQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKIN 193 (329)
Q Consensus 116 ~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~ 193 (329)
.++....++...+++.++.+|||+|||+|..+..+++..+ ++|+++|+++.+++.+++|++++++. ++++.+|+...
T Consensus 15 ~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~- 93 (187)
T PRK08287 15 TKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIE- 93 (187)
T ss_pred chHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhh-
Confidence 3455556666677888899999999999999999998765 79999999999999999999998876 78888886421
Q ss_pred hhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEE
Q psy15212 194 LKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 273 (329)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvy 273 (329)
....||+|+++..- + . ..++++.+.+.|+|||++++
T Consensus 94 -------------------~~~~~D~v~~~~~~---~---------------~-------~~~~l~~~~~~Lk~gG~lv~ 129 (187)
T PRK08287 94 -------------------LPGKADAIFIGGSG---G---------------N-------LTAIIDWSLAHLHPGGRLVL 129 (187)
T ss_pred -------------------cCcCCCEEEECCCc---c---------------C-------HHHHHHHHHHhcCCCeEEEE
Confidence 13579999975320 0 0 13468889999999999998
Q ss_pred EcCCCCccccHHHHHHHHhhC
Q psy15212 274 VTCSLWFEESEEQAIIFSKNH 294 (329)
Q Consensus 274 sTCS~~~~Ene~vv~~~l~~~ 294 (329)
... ..++...+..+++++
T Consensus 130 ~~~---~~~~~~~~~~~l~~~ 147 (187)
T PRK08287 130 TFI---LLENLHSALAHLEKC 147 (187)
T ss_pred EEe---cHhhHHHHHHHHHHC
Confidence 643 245666677778776
No 41
>PRK04266 fibrillarin; Provisional
Probab=99.50 E-value=1.7e-12 Score=116.72 Aligned_cols=152 Identities=20% Similarity=0.134 Sum_probs=101.2
Q ss_pred cCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccc
Q psy15212 128 LDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 128 l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
+.+++|++|||+|||+|.++.++++..+ ++|+|+|+++.+++.+.+++++. -.+.++.+|+.....
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~-~nv~~i~~D~~~~~~------------ 134 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER-KNIIPILADARKPER------------ 134 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc-CCcEEEECCCCCcch------------
Confidence 6788999999999999999999999875 79999999999999888887653 237788889865310
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc------CCCCc
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT------CSLWF 280 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT------CS~~~ 280 (329)
.+. ..+.||.|++|.+- | | ....+|+.+.++|||||+++.+. +...+
T Consensus 135 -~~~--l~~~~D~i~~d~~~---------p---~------------~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~ 187 (226)
T PRK04266 135 -YAH--VVEKVDVIYQDVAQ---------P---N------------QAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDP 187 (226)
T ss_pred -hhh--ccccCCEEEECCCC---------h---h------------HHHHHHHHHHHhcCCCcEEEEEEecccccCcCCH
Confidence 000 12469999987541 1 0 01346889999999999999842 22222
Q ss_pred cccHHHHHHHHhhCCCcEEecCCCcccCCCCCCCCCCeEEEEEEEec
Q psy15212 281 EESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 327 (329)
Q Consensus 281 ~Ene~vv~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~gff~a~l~k~ 327 (329)
.+--+.....++.. +|+.+... .+.| .+.+.|+.+++++
T Consensus 188 ~~~~~~~~~~l~~a-GF~~i~~~-~l~p------~~~~h~~~v~~~~ 226 (226)
T PRK04266 188 KEIFKEEIRKLEEG-GFEILEVV-DLEP------YHKDHAAVVARKK 226 (226)
T ss_pred HHHHHHHHHHHHHc-CCeEEEEE-cCCC------CcCCeEEEEEEcC
Confidence 11111122444444 56655421 1222 3357888888764
No 42
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=8e-13 Score=118.32 Aligned_cols=137 Identities=22% Similarity=0.258 Sum_probs=110.7
Q ss_pred EEEcCCCCCCCCcccccceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHH
Q psy15212 95 IKLHTPISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMIS 172 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~ 172 (329)
+.+-.+.....+..++.+.=.+--+.+.+++..+++.||++|||+|+|+|..|..+|...+ |+|+..|+.+..++.++
T Consensus 57 f~vl~p~~~d~~~~~~R~tQiIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~ 136 (256)
T COG2519 57 FYVLKPTPEDYLLSMKRRTQIIYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTAR 136 (256)
T ss_pred EEEeCCCHHHHHHhCcCCCceecCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHH
Confidence 3444444444444577777777777788888899999999999999999999999997655 89999999999999999
Q ss_pred HHHHHcCCc--eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH
Q psy15212 173 ENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL 250 (329)
Q Consensus 173 ~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l 250 (329)
+|++..|+. +++..+|..+.. ....||.|++|.|--
T Consensus 137 ~Nl~~~~l~d~v~~~~~Dv~~~~-------------------~~~~vDav~LDmp~P----------------------- 174 (256)
T COG2519 137 ENLSEFGLGDRVTLKLGDVREGI-------------------DEEDVDAVFLDLPDP----------------------- 174 (256)
T ss_pred HHHHHhccccceEEEeccccccc-------------------cccccCEEEEcCCCh-----------------------
Confidence 999999885 788889988754 235899999999822
Q ss_pred HHHHHHHHHHHHhcCCCCCEE-EEEcCC
Q psy15212 251 SKYSCKILNNLWKMLKPGGKL-LFVTCS 277 (329)
Q Consensus 251 ~~~q~~lL~~a~~~LkpgG~l-vysTCS 277 (329)
-+.|+++.+.|+|||.+ +|+.|.
T Consensus 175 ----W~~le~~~~~Lkpgg~~~~y~P~v 198 (256)
T COG2519 175 ----WNVLEHVSDALKPGGVVVVYSPTV 198 (256)
T ss_pred ----HHHHHHHHHHhCCCcEEEEEcCCH
Confidence 24799999999999954 566664
No 43
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.48 E-value=9.3e-13 Score=116.14 Aligned_cols=129 Identities=24% Similarity=0.342 Sum_probs=98.6
Q ss_pred HHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCC-c-eEEEecCccccchhh
Q psy15212 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNL-K-ATLILSDISKINLKK 196 (329)
Q Consensus 121 s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~-~-v~~~~~D~~~~~~~~ 196 (329)
..++...+++.+|++|||+|||+|..+..++...+ ++|+++|+++.+++.+++|++.+|+ . +.++.+|+.+..
T Consensus 29 r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l--- 105 (198)
T PRK00377 29 RALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEIL--- 105 (198)
T ss_pred HHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhH---
Confidence 34444456788999999999999999999988754 6999999999999999999999995 3 788888886532
Q ss_pred hhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 197 LYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
.. ....||.|+++.... ....+++.+.+.|+|||++++.+|
T Consensus 106 -------------~~-~~~~~D~V~~~~~~~-------------------------~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 106 -------------FT-INEKFDRIFIGGGSE-------------------------KLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred -------------hh-cCCCCCEEEECCCcc-------------------------cHHHHHHHHHHHcCCCcEEEEEee
Confidence 11 235799999853100 124578999999999999999888
Q ss_pred CCCccccHHHHHHHHhhC
Q psy15212 277 SLWFEESEEQAIIFSKNH 294 (329)
Q Consensus 277 S~~~~Ene~vv~~~l~~~ 294 (329)
++ ++...+...++++
T Consensus 147 ~~---~~~~~~~~~l~~~ 161 (198)
T PRK00377 147 LL---ETVNNALSALENI 161 (198)
T ss_pred cH---HHHHHHHHHHHHc
Confidence 54 4445555666655
No 44
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.48 E-value=1.9e-12 Score=124.32 Aligned_cols=124 Identities=15% Similarity=0.168 Sum_probs=96.8
Q ss_pred chhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc----eEEEecCcccc
Q psy15212 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK----ATLILSDISKI 192 (329)
Q Consensus 118 d~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~----v~~~~~D~~~~ 192 (329)
|.++.+....+....+.+|||+|||+|..++.+++..+ .+|+++|+|+.+++.+++|++.++.. ++++..|+...
T Consensus 214 D~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~ 293 (378)
T PRK15001 214 DIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG 293 (378)
T ss_pred ChHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc
Confidence 77888888887665567999999999999999999876 79999999999999999999988642 57777776542
Q ss_pred chhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEE
Q psy15212 193 NLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLL 272 (329)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lv 272 (329)
. ...+||.|++|||+..-..+ +. . .-.++++.+.+.|+|||.|+
T Consensus 294 ~-------------------~~~~fDlIlsNPPfh~~~~~----------~~-~------ia~~l~~~a~~~LkpGG~L~ 337 (378)
T PRK15001 294 V-------------------EPFRFNAVLCNPPFHQQHAL----------TD-N------VAWEMFHHARRCLKINGELY 337 (378)
T ss_pred C-------------------CCCCEEEEEECcCcccCccC----------CH-H------HHHHHHHHHHHhcccCCEEE
Confidence 1 24589999999997521110 11 1 12468999999999999998
Q ss_pred EEcCC
Q psy15212 273 FVTCS 277 (329)
Q Consensus 273 ysTCS 277 (329)
+..-.
T Consensus 338 iV~nr 342 (378)
T PRK15001 338 IVANR 342 (378)
T ss_pred EEEec
Confidence 87533
No 45
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.47 E-value=1.6e-12 Score=113.18 Aligned_cols=129 Identities=19% Similarity=0.176 Sum_probs=99.4
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhcccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
+|.+|||+|||+|..+..++...+ ++|+|+|.++.+++.+++++++.++. ++++.+|+.+..
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~---------------- 105 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ---------------- 105 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc----------------
Confidence 378999999999999999987665 79999999999999999999999986 899999987653
Q ss_pred cccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHHH
Q psy15212 210 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAII 289 (329)
Q Consensus 210 ~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~ 289 (329)
..+.||.|++++ . + ....+++.+.++|+|||+++.. +....+..+..
T Consensus 106 ---~~~~fD~I~s~~--~--~----------------------~~~~~~~~~~~~LkpgG~lvi~----~~~~~~~~~~~ 152 (181)
T TIGR00138 106 ---HEEQFDVITSRA--L--A----------------------SLNVLLELTLNLLKVGGYFLAY----KGKKYLDEIEE 152 (181)
T ss_pred ---ccCCccEEEehh--h--h----------------------CHHHHHHHHHHhcCCCCEEEEE----cCCCcHHHHHH
Confidence 246899999753 0 0 0124677778999999999875 44555666666
Q ss_pred HHhhC--CCcEEecCCCcccCC
Q psy15212 290 FSKNH--KDSIRLNSPGQLLPT 309 (329)
Q Consensus 290 ~l~~~--~~~~~~~~~~~~~p~ 309 (329)
..++. -+++.++.+..++|+
T Consensus 153 ~~e~~~~~~~~~~~~~~~~~~~ 174 (181)
T TIGR00138 153 AKRKCQVLGVEPLEVPPLTGPD 174 (181)
T ss_pred HHHhhhhcCceEeeccccCCCc
Confidence 66653 366777666666664
No 46
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.46 E-value=1.1e-12 Score=115.46 Aligned_cols=123 Identities=20% Similarity=0.266 Sum_probs=98.0
Q ss_pred ceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCc
Q psy15212 112 GFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDI 189 (329)
Q Consensus 112 G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~ 189 (329)
|.-..|...+.+....+.+.++++|||+|||+|..+..++...+ ++|+++|+++.+++.+++|++++++. ++++.+|+
T Consensus 20 ~~p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~ 99 (196)
T PRK07402 20 GIPLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSA 99 (196)
T ss_pred CCCCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECch
Confidence 43456788888888888888999999999999999999987655 79999999999999999999999886 88999987
Q ss_pred cccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCC
Q psy15212 190 SKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 269 (329)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG 269 (329)
.... .. ....+|.|++|... . ..++++.+.+.|+|||
T Consensus 100 ~~~~----------------~~-~~~~~d~v~~~~~~-------------------~-------~~~~l~~~~~~LkpgG 136 (196)
T PRK07402 100 PECL----------------AQ-LAPAPDRVCIEGGR-------------------P-------IKEILQAVWQYLKPGG 136 (196)
T ss_pred HHHH----------------hh-CCCCCCEEEEECCc-------------------C-------HHHHHHHHHHhcCCCe
Confidence 6421 01 12346888775310 0 1457899999999999
Q ss_pred EEEEEcCC
Q psy15212 270 KLLFVTCS 277 (329)
Q Consensus 270 ~lvysTCS 277 (329)
++++.+++
T Consensus 137 ~li~~~~~ 144 (196)
T PRK07402 137 RLVATASS 144 (196)
T ss_pred EEEEEeec
Confidence 99998876
No 47
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.46 E-value=1e-12 Score=117.16 Aligned_cols=117 Identities=23% Similarity=0.299 Sum_probs=90.9
Q ss_pred ceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecC
Q psy15212 112 GFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK-ATLILSD 188 (329)
Q Consensus 112 G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D 188 (329)
|....+.........++++++|++|||+|||+|..+..+++..+ ++|+++|+++.+++.+++++++.|+. ++++.+|
T Consensus 56 g~~~~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd 135 (212)
T PRK13942 56 GQTISAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGD 135 (212)
T ss_pred CCEeCcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECC
Confidence 44444444455566677889999999999999999999998865 69999999999999999999999986 8999999
Q ss_pred ccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCC
Q psy15212 189 ISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPG 268 (329)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~Lkpg 268 (329)
+.... .....||+|+++.-.. ++.....+.||||
T Consensus 136 ~~~~~------------------~~~~~fD~I~~~~~~~----------------------------~~~~~l~~~Lkpg 169 (212)
T PRK13942 136 GTLGY------------------EENAPYDRIYVTAAGP----------------------------DIPKPLIEQLKDG 169 (212)
T ss_pred cccCC------------------CcCCCcCEEEECCCcc----------------------------cchHHHHHhhCCC
Confidence 87532 2346899999864311 1122345579999
Q ss_pred CEEEEE
Q psy15212 269 GKLLFV 274 (329)
Q Consensus 269 G~lvys 274 (329)
|+|+..
T Consensus 170 G~lvi~ 175 (212)
T PRK13942 170 GIMVIP 175 (212)
T ss_pred cEEEEE
Confidence 998864
No 48
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=3.7e-12 Score=117.16 Aligned_cols=154 Identities=23% Similarity=0.184 Sum_probs=116.8
Q ss_pred echhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCce-EEEecCccccch
Q psy15212 117 QDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKA-TLILSDISKINL 194 (329)
Q Consensus 117 Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v-~~~~~D~~~~~~ 194 (329)
-|..|.+...-|....+.+|||+|||.|-.++.+++..+ .+|+-+|+|...++.++.|++.++++. .++..|.....
T Consensus 143 lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v- 221 (300)
T COG2813 143 LDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPV- 221 (300)
T ss_pred cChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccc-
Confidence 588899999999888777999999999999999999987 899999999999999999999999985 67777766532
Q ss_pred hhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 195 KKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
.++||.|++|||.- .| .......-.+|++.|.+.|++||.|...
T Consensus 222 -------------------~~kfd~IisNPPfh-~G----------------~~v~~~~~~~~i~~A~~~L~~gGeL~iV 265 (300)
T COG2813 222 -------------------EGKFDLIISNPPFH-AG----------------KAVVHSLAQEIIAAAARHLKPGGELWIV 265 (300)
T ss_pred -------------------cccccEEEeCCCcc-CC----------------cchhHHHHHHHHHHHHHhhccCCEEEEE
Confidence 24899999999954 11 1111223357899999999999999887
Q ss_pred cCCCCccccHHHHHHHHhhC-CCcEEecCCCcccCCCCCCCCCCeEEEEEEEe
Q psy15212 275 TCSLWFEESEEQAIIFSKNH-KDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 326 (329)
Q Consensus 275 TCS~~~~Ene~vv~~~l~~~-~~~~~~~~~~~~~p~~~~~~~~~gff~a~l~k 326 (329)
.-...+- ...|++. .+.+.+ ....||+|=+-+|
T Consensus 266 an~~l~y------~~~L~~~Fg~v~~l-------------a~~~gf~Vl~a~k 299 (300)
T COG2813 266 ANRHLPY------EKKLKELFGNVEVL-------------AKNGGFKVLRAKK 299 (300)
T ss_pred EcCCCCh------HHHHHHhcCCEEEE-------------EeCCCEEEEEEec
Confidence 6654442 2334443 233333 3556887766554
No 49
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.45 E-value=9.1e-13 Score=116.65 Aligned_cols=115 Identities=17% Similarity=0.316 Sum_probs=87.7
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCc-cccchhhhhhhhccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDI-SKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~-~~~~~~~~~~~~~~~~~~~ 208 (329)
++.+|||+|||+|..+..+++..+ .+|+|+|+|+.+++.++++++..++. ++++++|+ ..+.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~--------------- 104 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLL--------------- 104 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHH---------------
Confidence 578999999999999999998776 69999999999999999999998875 89999998 5433
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
..+.++.||.|+++.|.. |......... ..+..+|+.+.++|||||+++++|+
T Consensus 105 -~~~~~~~~D~V~~~~~~p------------~~~~~~~~~~--~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 105 -DMFPDGSLDRIYLNFPDP------------WPKKRHHKRR--LVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred -HHcCccccceEEEECCCC------------CCCccccccc--cCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 112456899999876521 1110000000 1246789999999999999998864
No 50
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.45 E-value=1.9e-12 Score=114.90 Aligned_cols=108 Identities=22% Similarity=0.275 Sum_probs=86.5
Q ss_pred HHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhh
Q psy15212 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKK 196 (329)
Q Consensus 121 s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~ 196 (329)
......++++++|++|||+|||+|..+..+++..+ ++|+++|+++.+++.+++|+++.++. ++++.+|+....
T Consensus 61 ~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~--- 137 (205)
T PRK13944 61 VAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGL--- 137 (205)
T ss_pred HHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCC---
Confidence 34445667788999999999999999999998875 79999999999999999999999875 789999987642
Q ss_pred hhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 197 LYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
.....||.|+++.... .+.....+.|+|||+|++.
T Consensus 138 ---------------~~~~~fD~Ii~~~~~~----------------------------~~~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 138 ---------------EKHAPFDAIIVTAAAS----------------------------TIPSALVRQLKDGGVLVIP 172 (205)
T ss_pred ---------------ccCCCccEEEEccCcc----------------------------hhhHHHHHhcCcCcEEEEE
Confidence 1236899999886522 1123456779999999875
No 51
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.45 E-value=7.6e-13 Score=111.60 Aligned_cols=108 Identities=25% Similarity=0.329 Sum_probs=88.1
Q ss_pred CCCCeEEeecCCCchHHHHHHHh-CC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhcccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEI-AD-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~-~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
+.+.+|||+|||+|..+..+++. .+ ++++++|+|+.+++.+++++++.++. +++.++|+.+++
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~-------------- 67 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLP-------------- 67 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGC--------------
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccc--------------
Confidence 46789999999999999999954 33 79999999999999999999999997 999999999854
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
..+. +.||.|+++.++.... ....+++.+.++|++||.++.+.+.
T Consensus 68 --~~~~-~~~D~I~~~~~l~~~~----------------------~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 68 --QELE-EKFDIIISNGVLHHFP----------------------DPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp --GCSS-TTEEEEEEESTGGGTS----------------------HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred --cccC-CCeeEEEEcCchhhcc----------------------CHHHHHHHHHHHcCCCcEEEEEECC
Confidence 1112 6899999987752110 1346789999999999999988776
No 52
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.44 E-value=3.3e-12 Score=102.99 Aligned_cols=108 Identities=19% Similarity=0.361 Sum_probs=86.4
Q ss_pred hhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhcc
Q psy15212 126 PLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINK 203 (329)
Q Consensus 126 ~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~ 203 (329)
..+.+.++++|||+|||+|..+..+++..+ .+|+++|+++.+++.++++++.+++. ++++..|+....
T Consensus 13 ~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~---------- 82 (124)
T TIGR02469 13 SKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEAL---------- 82 (124)
T ss_pred HHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccC----------
Confidence 345667788999999999999999999876 79999999999999999999998876 788888876422
Q ss_pred cccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 204 KTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 204 ~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
. ....+||.|+++.+- . ...++++.+.+.|+|||+++.+.
T Consensus 83 ------~-~~~~~~D~v~~~~~~------------------~-------~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 83 ------E-DSLPEPDRVFIGGSG------------------G-------LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred ------h-hhcCCCCEEEECCcc------------------h-------hHHHHHHHHHHHcCCCCEEEEEe
Confidence 0 123589999985420 0 12478999999999999998754
No 53
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=2.3e-12 Score=119.54 Aligned_cols=160 Identities=20% Similarity=0.195 Sum_probs=106.6
Q ss_pred cceEEEechhHHHHhhhc-CCCCCC-eEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEe
Q psy15212 111 NGFCSIQDAAAQLAAPLL-DIRSGM-YVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-ATLIL 186 (329)
Q Consensus 111 ~G~~~~Qd~~s~l~~~~l-~~~~g~-~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~ 186 (329)
.+.+.....+..++-.++ .....+ +|||+|||+|..++.++...+ ..|+|+|+|+..++.+++|++++|+. +.++.
T Consensus 87 ~~vliPr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~ 166 (280)
T COG2890 87 EGVLIPRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQ 166 (280)
T ss_pred CCceecCCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEe
Confidence 355555666666665543 222223 799999999999999998877 69999999999999999999999974 45555
Q ss_pred cCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhH----HHHHHHHHHHHHHHHH
Q psy15212 187 SDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKND----IKKLSKYSCKILNNLW 262 (329)
Q Consensus 187 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~----~~~l~~~q~~lL~~a~ 262 (329)
+|..... .++||+|++||||-..-.....|+.... .+.. -..-....++++..+.
T Consensus 167 ~dlf~~~--------------------~~~fDlIVsNPPYip~~~~~~~~~~~~~-EP~~Al~~g~dGl~~~~~i~~~a~ 225 (280)
T COG2890 167 SDLFEPL--------------------RGKFDLIVSNPPYIPAEDPELLPEVVRY-EPLLALVGGGDGLEVYRRILGEAP 225 (280)
T ss_pred eeccccc--------------------CCceeEEEeCCCCCCCcccccChhhhcc-CHHHHHccCccHHHHHHHHHHhhH
Confidence 5655432 2489999999999655422222221100 0100 0022446788999999
Q ss_pred hcCCCCCEEEEEcCCCCccccHHHHHHHHhhC
Q psy15212 263 KMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH 294 (329)
Q Consensus 263 ~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~~ 294 (329)
++|+|||.++.- + .....+.+.+.|.+..
T Consensus 226 ~~l~~~g~l~le-~--g~~q~~~v~~~~~~~~ 254 (280)
T COG2890 226 DILKPGGVLILE-I--GLTQGEAVKALFEDTG 254 (280)
T ss_pred HHcCCCcEEEEE-E--CCCcHHHHHHHHHhcC
Confidence 999999988854 2 2233445555554443
No 54
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.44 E-value=4.4e-12 Score=110.85 Aligned_cols=130 Identities=21% Similarity=0.213 Sum_probs=96.9
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhccccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
.++.+|||+|||+|..+..++...+ ++|+++|.++.+++.+++++++.++. ++++.+|+.+..
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~--------------- 108 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFG--------------- 108 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCC---------------
Confidence 3488999999999999999997655 79999999999999999999999986 899999987764
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHH
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAI 288 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~ 288 (329)
. .++||.|+++. .+ . -..+++.+.++|+|||++++....... ..+.
T Consensus 109 ---~-~~~fDlV~~~~----~~---------------~-------~~~~l~~~~~~LkpGG~lv~~~~~~~~----~~l~ 154 (187)
T PRK00107 109 ---Q-EEKFDVVTSRA----VA---------------S-------LSDLVELCLPLLKPGGRFLALKGRDPE----EEIA 154 (187)
T ss_pred ---C-CCCccEEEEcc----cc---------------C-------HHHHHHHHHHhcCCCeEEEEEeCCChH----HHHH
Confidence 1 46899999752 00 0 135788999999999999987655333 3344
Q ss_pred HHHhhCCCcEEecCCCcccCCC
Q psy15212 289 IFSKNHKDSIRLNSPGQLLPTV 310 (329)
Q Consensus 289 ~~l~~~~~~~~~~~~~~~~p~~ 310 (329)
...+.. +..+...-...+|+.
T Consensus 155 ~~~~~~-~~~~~~~~~~~~~~~ 175 (187)
T PRK00107 155 ELPKAL-GGKVEEVIELTLPGL 175 (187)
T ss_pred HHHHhc-CceEeeeEEEecCCC
Confidence 444443 444433222345664
No 55
>PTZ00146 fibrillarin; Provisional
Probab=99.42 E-value=5.1e-12 Score=116.68 Aligned_cols=113 Identities=24% Similarity=0.319 Sum_probs=82.7
Q ss_pred HHHHhhhc------CCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCcccc
Q psy15212 121 AQLAAPLL------DIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKI 192 (329)
Q Consensus 121 s~l~~~~l------~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~ 192 (329)
|.|++.++ .+++|++|||+|||||.++.++|+..+ ++|+|+|+++.+++.+.+..+.. -.+.++..|++..
T Consensus 115 SKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r-~NI~~I~~Da~~p 193 (293)
T PTZ00146 115 SKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR-PNIVPIIEDARYP 193 (293)
T ss_pred cHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-CCCEEEECCccCh
Confidence 66776663 478999999999999999999999985 79999999988776666655432 2367888898753
Q ss_pred chhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHH-HHHHHHHhcCCCCCEE
Q psy15212 193 NLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSC-KILNNLWKMLKPGGKL 271 (329)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~-~lL~~a~~~LkpgG~l 271 (329)
. . +. ...+.||+|++|.. .|+ |. .++.++.++|||||++
T Consensus 194 ~--~------------y~-~~~~~vDvV~~Dva---------~pd----------------q~~il~~na~r~LKpGG~~ 233 (293)
T PTZ00146 194 Q--K------------YR-MLVPMVDVIFADVA---------QPD----------------QARIVALNAQYFLKNGGHF 233 (293)
T ss_pred h--h------------hh-cccCCCCEEEEeCC---------Ccc----------------hHHHHHHHHHHhccCCCEE
Confidence 2 0 00 12247999999974 111 33 3455788999999999
Q ss_pred EEE
Q psy15212 272 LFV 274 (329)
Q Consensus 272 vys 274 (329)
+.+
T Consensus 234 vI~ 236 (293)
T PTZ00146 234 IIS 236 (293)
T ss_pred EEE
Confidence 985
No 56
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.42 E-value=2.6e-12 Score=111.62 Aligned_cols=122 Identities=26% Similarity=0.327 Sum_probs=88.2
Q ss_pred HHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CE---------EEEEeCChhHHHHHHHHHHHcCCc--eEEEecC
Q psy15212 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IK---------LISVDNNLSRLNMISENLKRLNLK--ATLILSD 188 (329)
Q Consensus 121 s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~---------v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D 188 (329)
+.....+.++++|+.|||.+||+|++.+..|.... .. ++|+|+++..++.+++|++..|+. +.+...|
T Consensus 17 A~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D 96 (179)
T PF01170_consen 17 AAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWD 96 (179)
T ss_dssp HHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--
T ss_pred HHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecc
Confidence 33444556788999999999999999988876544 33 899999999999999999999986 7899999
Q ss_pred ccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCC
Q psy15212 189 ISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPG 268 (329)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~Lkpg 268 (329)
++.++ ...+.+|.|++|||+- ........+..+..++++.+.+.|++
T Consensus 97 ~~~l~------------------~~~~~~d~IvtnPPyG--------------~r~~~~~~~~~ly~~~~~~~~~~l~~- 143 (179)
T PF01170_consen 97 ARELP------------------LPDGSVDAIVTNPPYG--------------RRLGSKKDLEKLYRQFLRELKRVLKP- 143 (179)
T ss_dssp GGGGG------------------GTTSBSCEEEEE--ST--------------TSHCHHHHHHHHHHHHHHHHHCHSTT-
T ss_pred hhhcc------------------cccCCCCEEEECcchh--------------hhccCHHHHHHHHHHHHHHHHHHCCC-
Confidence 99875 2456899999999964 22333445577889999999999998
Q ss_pred CEEEEEcC
Q psy15212 269 GKLLFVTC 276 (329)
Q Consensus 269 G~lvysTC 276 (329)
+.++.|+
T Consensus 144 -~~v~l~~ 150 (179)
T PF01170_consen 144 -RAVFLTT 150 (179)
T ss_dssp -CEEEEEE
T ss_pred -CEEEEEE
Confidence 4444444
No 57
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.41 E-value=3.8e-12 Score=114.55 Aligned_cols=114 Identities=20% Similarity=0.423 Sum_probs=90.3
Q ss_pred HHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhh
Q psy15212 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLY 198 (329)
Q Consensus 122 ~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~ 198 (329)
......+.+++|++|||+|||+|..+..+++..+ ++|+++|+++.+++.+++++++.++. ++++.+|+...+
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----- 109 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP----- 109 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC-----
Confidence 3444566788899999999999999999998764 69999999999999999999988876 889999987754
Q ss_pred hhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 199 IDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
+..++||.|+++-. ++..++ ..++|+.+.+.|+|||+++..+
T Consensus 110 -------------~~~~~fD~V~~~~~------l~~~~~----------------~~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 110 -------------FDDNSFDYVTIGFG------LRNVPD----------------YMQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred -------------CCCCCccEEEEecc------cccCCC----------------HHHHHHHHHHHcCcCeEEEEEE
Confidence 24578999987532 111111 2357899999999999998764
No 58
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=2.7e-12 Score=112.55 Aligned_cols=98 Identities=19% Similarity=0.245 Sum_probs=83.6
Q ss_pred cceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCc
Q psy15212 111 NGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDI 189 (329)
Q Consensus 111 ~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~ 189 (329)
.|....|----....++|++++|++||++|||+|..+..||++.+ +|+++|+.+...+.+++|++.+|+. +.++++|.
T Consensus 51 ~gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG 129 (209)
T COG2518 51 CGQTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYENVTVRHGDG 129 (209)
T ss_pred CCceecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCc
Confidence 466666665566677888999999999999999999999999876 9999999999999999999999995 99999998
Q ss_pred cccchhhhhhhhcccccccccccCCCCCCEEEEccCCc
Q psy15212 190 SKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCT 227 (329)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCs 227 (329)
..- |.....||+|++.+-+.
T Consensus 130 ~~G------------------~~~~aPyD~I~Vtaaa~ 149 (209)
T COG2518 130 SKG------------------WPEEAPYDRIIVTAAAP 149 (209)
T ss_pred ccC------------------CCCCCCcCEEEEeeccC
Confidence 762 23457999999876543
No 59
>KOG1540|consensus
Probab=99.41 E-value=2.7e-12 Score=114.45 Aligned_cols=137 Identities=23% Similarity=0.304 Sum_probs=108.7
Q ss_pred HHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-------CEEEEEeCChhHHHHHHHHHHHcCCc----eEEEecCccc
Q psy15212 123 LAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-------IKLISVDNNLSRLNMISENLKRLNLK----ATLILSDISK 191 (329)
Q Consensus 123 l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-------~~v~avD~~~~rl~~l~~n~~~~g~~----v~~~~~D~~~ 191 (329)
+.+..|+|.+|.+|||+|+|+|-.+..+.+..+ .+|+.+|+|+++|+..+++.++.++. +.++.+|+.+
T Consensus 91 ~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~ 170 (296)
T KOG1540|consen 91 MFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAED 170 (296)
T ss_pred HhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCccc
Confidence 445677899999999999999999999988754 59999999999999999999888774 6789999999
Q ss_pred cchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEE
Q psy15212 192 INLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKL 271 (329)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~l 271 (329)
++ +++..||...+ +.|+ |.-++ ..+.|++|++.|||||++
T Consensus 171 Lp------------------Fdd~s~D~yTi-----afGI-RN~th----------------~~k~l~EAYRVLKpGGrf 210 (296)
T KOG1540|consen 171 LP------------------FDDDSFDAYTI-----AFGI-RNVTH----------------IQKALREAYRVLKPGGRF 210 (296)
T ss_pred CC------------------CCCCcceeEEE-----ecce-ecCCC----------------HHHHHHHHHHhcCCCcEE
Confidence 87 56788998763 2332 11111 134689999999999988
Q ss_pred EEEcCCCCccccHHHHHHHHhhCCCcEEecCC
Q psy15212 272 LFVTCSLWFEESEEQAIIFSKNHKDSIRLNSP 303 (329)
Q Consensus 272 vysTCS~~~~Ene~vv~~~l~~~~~~~~~~~~ 303 (329)
. |--++.+|.+.+++|.+.+ -+..+|..
T Consensus 211 ~---cLeFskv~~~~l~~fy~~y-sf~Vlpvl 238 (296)
T KOG1540|consen 211 S---CLEFSKVENEPLKWFYDQY-SFDVLPVL 238 (296)
T ss_pred E---EEEccccccHHHHHHHHhh-hhhhhchh
Confidence 7 7777788878899998877 45556654
No 60
>PLN02244 tocopherol O-methyltransferase
Probab=99.40 E-value=3.7e-12 Score=121.46 Aligned_cols=107 Identities=16% Similarity=0.240 Sum_probs=87.4
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhccccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
.++++|||+|||+|+.+..+++..+.+|+|+|+++.+++.++++.+..|+. ++++.+|+...+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~--------------- 181 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQP--------------- 181 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCC---------------
Confidence 678899999999999999999877779999999999999999999988874 899999998765
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
+.++.||+|++. ..+.+.++ ..++++++.++|||||+++.+++.
T Consensus 182 ---~~~~~FD~V~s~------~~~~h~~d----------------~~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 182 ---FEDGQFDLVWSM------ESGEHMPD----------------KRKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred ---CCCCCccEEEEC------CchhccCC----------------HHHHHHHHHHHcCCCcEEEEEEec
Confidence 356789999852 11111111 246789999999999999998753
No 61
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.39 E-value=6.7e-12 Score=111.73 Aligned_cols=114 Identities=25% Similarity=0.229 Sum_probs=89.0
Q ss_pred EechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccch
Q psy15212 116 IQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINL 194 (329)
Q Consensus 116 ~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~ 194 (329)
.+-........++.++++++|||+|||+|..+..+++.. ++|+++|+++.+++.+++++++.++. ++++.+|+....
T Consensus 62 ~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~- 139 (212)
T PRK00312 62 SQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGW- 139 (212)
T ss_pred CcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCC-
Confidence 333333444556788899999999999999999888765 49999999999999999999999986 899999976532
Q ss_pred hhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 195 KKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
...+.||+|++++++.. +.+...+.|+|||+++.+
T Consensus 140 -----------------~~~~~fD~I~~~~~~~~----------------------------~~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 140 -----------------PAYAPFDRILVTAAAPE----------------------------IPRALLEQLKEGGILVAP 174 (212)
T ss_pred -----------------CcCCCcCEEEEccCchh----------------------------hhHHHHHhcCCCcEEEEE
Confidence 12368999999876431 123456789999999987
Q ss_pred cC
Q psy15212 275 TC 276 (329)
Q Consensus 275 TC 276 (329)
..
T Consensus 175 ~~ 176 (212)
T PRK00312 175 VG 176 (212)
T ss_pred Ec
Confidence 54
No 62
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.39 E-value=1.5e-12 Score=120.21 Aligned_cols=122 Identities=20% Similarity=0.281 Sum_probs=88.6
Q ss_pred echhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccch
Q psy15212 117 QDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINL 194 (329)
Q Consensus 117 Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~ 194 (329)
|...-..+...+++++|++|||+|||.|+.+..+|+..+.+|+++.+|+...+.+++.+++.|+. +++...|.++++
T Consensus 47 Q~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~- 125 (273)
T PF02353_consen 47 QERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP- 125 (273)
T ss_dssp HHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC-
Confidence 33444566777789999999999999999999999988889999999999999999999999996 889999988765
Q ss_pred hhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 195 KKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
.+||+|+ +.|++.+-+.. ....+++.+.++|||||+++.-
T Consensus 126 --------------------~~fD~Iv------Si~~~Ehvg~~--------------~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 126 --------------------GKFDRIV------SIEMFEHVGRK--------------NYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp ---------------------S-SEEE------EESEGGGTCGG--------------GHHHHHHHHHHHSETTEEEEEE
T ss_pred --------------------CCCCEEE------EEechhhcChh--------------HHHHHHHHHHHhcCCCcEEEEE
Confidence 3899998 34555433211 1246789999999999999877
Q ss_pred cCCCC
Q psy15212 275 TCSLW 279 (329)
Q Consensus 275 TCS~~ 279 (329)
+++..
T Consensus 166 ~i~~~ 170 (273)
T PF02353_consen 166 TITHR 170 (273)
T ss_dssp EEEE-
T ss_pred ecccc
Confidence 65543
No 63
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.38 E-value=2.9e-12 Score=121.02 Aligned_cols=84 Identities=14% Similarity=0.170 Sum_probs=70.6
Q ss_pred cCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhccccc
Q psy15212 128 LDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 128 l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
+...++.+|||+|||+|..++.+|+.. .+|+|+|+++.+++.+++|++.+|+. ++++.+|+..+.
T Consensus 169 l~~~~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~------------- 234 (315)
T PRK03522 169 VRELPPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFA------------- 234 (315)
T ss_pred HHhcCCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHH-------------
Confidence 333457899999999999999999854 69999999999999999999999996 899999987653
Q ss_pred ccccccCCCCCCEEEEccCCccc
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGS 229 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~ 229 (329)
.. ..+.||.|++|||+.|.
T Consensus 235 ---~~-~~~~~D~Vv~dPPr~G~ 253 (315)
T PRK03522 235 ---TA-QGEVPDLVLVNPPRRGI 253 (315)
T ss_pred ---Hh-cCCCCeEEEECCCCCCc
Confidence 10 12469999999998764
No 64
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.38 E-value=4.5e-12 Score=116.26 Aligned_cols=136 Identities=21% Similarity=0.291 Sum_probs=105.0
Q ss_pred echhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccch
Q psy15212 117 QDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINL 194 (329)
Q Consensus 117 Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~ 194 (329)
|-..-.++...|.++||++|||+|||-|+.+..+|+..+.+|+|+++|++..+.+++++...|+. +++...|..++.
T Consensus 57 Q~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~- 135 (283)
T COG2230 57 QRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE- 135 (283)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc-
Confidence 44445566677789999999999999999999999998899999999999999999999999997 889999988765
Q ss_pred hhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 195 KKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
+.||+|+ +.|++.+-.. +....+++.+.+.|+|||+++.-
T Consensus 136 --------------------e~fDrIv------SvgmfEhvg~--------------~~~~~ff~~~~~~L~~~G~~llh 175 (283)
T COG2230 136 --------------------EPFDRIV------SVGMFEHVGK--------------ENYDDFFKKVYALLKPGGRMLLH 175 (283)
T ss_pred --------------------cccceee------ehhhHHHhCc--------------ccHHHHHHHHHhhcCCCceEEEE
Confidence 4599998 4455432211 12456899999999999999887
Q ss_pred cCCCCccccHHHHHHHHhhC
Q psy15212 275 TCSLWFEESEEQAIIFSKNH 294 (329)
Q Consensus 275 TCS~~~~Ene~vv~~~l~~~ 294 (329)
|-+....+-. -...|+.++
T Consensus 176 ~I~~~~~~~~-~~~~~i~~y 194 (283)
T COG2230 176 SITGPDQEFR-RFPDFIDKY 194 (283)
T ss_pred EecCCCcccc-cchHHHHHh
Confidence 6554332222 334445544
No 65
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.38 E-value=1.5e-12 Score=115.80 Aligned_cols=106 Identities=16% Similarity=0.239 Sum_probs=85.4
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
-+|.+|||+|||-|..+..||++ |..|+|+|++++.++.++......|+.+......+.++.
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~-Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~----------------- 119 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL-GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLA----------------- 119 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC-CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHH-----------------
Confidence 36899999999999999999975 579999999999999999999999988766666665544
Q ss_pred ccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 211 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
..+++||+|+| .+-+++... ...+++.+.+++||||.++.||-.
T Consensus 120 -~~~~~FDvV~c---------------------mEVlEHv~d-p~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 120 -SAGGQFDVVTC---------------------MEVLEHVPD-PESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred -hcCCCccEEEE---------------------hhHHHccCC-HHHHHHHHHHHcCCCcEEEEeccc
Confidence 12479999996 222333332 345999999999999999999754
No 66
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.37 E-value=1.4e-11 Score=113.23 Aligned_cols=115 Identities=22% Similarity=0.360 Sum_probs=88.0
Q ss_pred HHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHH---cCC-ceEEEecCccccchhh
Q psy15212 123 LAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKR---LNL-KATLILSDISKINLKK 196 (329)
Q Consensus 123 l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~---~g~-~v~~~~~D~~~~~~~~ 196 (329)
++...+.+.++++|||+|||+|..+..+++..+ ++|+|+|+|+.+++.++++... .+. .++++.+|+..++
T Consensus 64 ~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp--- 140 (261)
T PLN02233 64 MAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP--- 140 (261)
T ss_pred HHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC---
Confidence 444566778899999999999999999988754 6999999999999999887642 123 3789999998865
Q ss_pred hhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 197 LYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
+.++.||.|++.- +++.-++ ..++|+++.+.|||||+++.++.
T Consensus 141 ---------------~~~~sfD~V~~~~------~l~~~~d----------------~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 141 ---------------FDDCYFDAITMGY------GLRNVVD----------------RLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred ---------------CCCCCEeEEEEec------ccccCCC----------------HHHHHHHHHHHcCcCcEEEEEEC
Confidence 3567899998521 1111111 34579999999999999998865
Q ss_pred C
Q psy15212 277 S 277 (329)
Q Consensus 277 S 277 (329)
+
T Consensus 184 ~ 184 (261)
T PLN02233 184 N 184 (261)
T ss_pred C
Confidence 5
No 67
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.37 E-value=2.9e-12 Score=116.19 Aligned_cols=117 Identities=26% Similarity=0.381 Sum_probs=87.5
Q ss_pred chhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccc
Q psy15212 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKIN 193 (329)
Q Consensus 118 d~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~ 193 (329)
-+...++...+++.||++||+.|+|+|+.|..++...+ |+|+..|.++.+++.+++|+++.|+. +++.+.|.....
T Consensus 26 pkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g 105 (247)
T PF08704_consen 26 PKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEG 105 (247)
T ss_dssp HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG-
T ss_pred CchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccc
Confidence 34445556688999999999999999999999998765 89999999999999999999999996 899999986532
Q ss_pred hhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcC-CCCCEEE
Q psy15212 194 LKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKML-KPGGKLL 272 (329)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~L-kpgG~lv 272 (329)
. ....+..||.|++|.|.- |. .+.++.+.| ++||+++
T Consensus 106 ~---------------~~~~~~~~DavfLDlp~P------------w~---------------~i~~~~~~L~~~gG~i~ 143 (247)
T PF08704_consen 106 F---------------DEELESDFDAVFLDLPDP------------WE---------------AIPHAKRALKKPGGRIC 143 (247)
T ss_dssp ----------------STT-TTSEEEEEEESSSG------------GG---------------GHHHHHHHE-EEEEEEE
T ss_pred c---------------cccccCcccEEEEeCCCH------------HH---------------HHHHHHHHHhcCCceEE
Confidence 0 000136799999999943 32 588889999 8999664
Q ss_pred -EEcC
Q psy15212 273 -FVTC 276 (329)
Q Consensus 273 -ysTC 276 (329)
||.|
T Consensus 144 ~fsP~ 148 (247)
T PF08704_consen 144 CFSPC 148 (247)
T ss_dssp EEESS
T ss_pred EECCC
Confidence 5555
No 68
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=1.1e-11 Score=114.50 Aligned_cols=137 Identities=18% Similarity=0.248 Sum_probs=103.6
Q ss_pred echhHHHHhhhcC--CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCcccc
Q psy15212 117 QDAAAQLAAPLLD--IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKI 192 (329)
Q Consensus 117 Qd~~s~l~~~~l~--~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~ 192 (329)
--++..++..+|+ .++|.+|||+|||+|-.++.++++...+|+|+|+++..++.+++|++++++. ++....+....
T Consensus 145 ~HpTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~ 224 (300)
T COG2264 145 THPTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEV 224 (300)
T ss_pred CChhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhh
Confidence 4667788888875 6789999999999999999999765579999999999999999999999987 33333332222
Q ss_pred chhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEE
Q psy15212 193 NLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLL 272 (329)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lv 272 (329)
...++||+|++| -|+..-.++...+.+.|||||+++
T Consensus 225 -------------------~~~~~~DvIVAN-------------------------ILA~vl~~La~~~~~~lkpgg~lI 260 (300)
T COG2264 225 -------------------PENGPFDVIVAN-------------------------ILAEVLVELAPDIKRLLKPGGRLI 260 (300)
T ss_pred -------------------cccCcccEEEeh-------------------------hhHHHHHHHHHHHHHHcCCCceEE
Confidence 134699999954 256667788999999999999999
Q ss_pred EEcCCCCccccHHHHHHHHhhCCCcEEec
Q psy15212 273 FVTCSLWFEESEEQAIIFSKNHKDSIRLN 301 (329)
Q Consensus 273 ysTCS~~~~Ene~vv~~~l~~~~~~~~~~ 301 (329)
.|- +..+. ++.|...+.+. ++++++
T Consensus 261 lSG--Il~~q-~~~V~~a~~~~-gf~v~~ 285 (300)
T COG2264 261 LSG--ILEDQ-AESVAEAYEQA-GFEVVE 285 (300)
T ss_pred EEe--ehHhH-HHHHHHHHHhC-CCeEeE
Confidence 985 55555 44455555443 566654
No 69
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.36 E-value=6.3e-12 Score=124.02 Aligned_cols=88 Identities=25% Similarity=0.303 Sum_probs=72.3
Q ss_pred hcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhcccc
Q psy15212 127 LLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKT 205 (329)
Q Consensus 127 ~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~ 205 (329)
.+.+.+|++|||+|||+|..++.+|+.. .+|+|+|+|+.+++.+++|++.+|+. ++++.+|+.+.. ...
T Consensus 292 ~l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l-~~~-------- 361 (443)
T PRK13168 292 WLDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDF-TDQ-------- 361 (443)
T ss_pred HhcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhh-hhh--------
Confidence 4456788999999999999999999865 59999999999999999999999986 899999986532 000
Q ss_pred cccccccCCCCCCEEEEccCCccc
Q psy15212 206 NNRFRFYKNKYFDRILADLPCTGS 229 (329)
Q Consensus 206 ~~~~~~~~~~~fD~Vl~D~PCsg~ 229 (329)
. +.++.||+|++|||++|.
T Consensus 362 ----~-~~~~~fD~Vi~dPPr~g~ 380 (443)
T PRK13168 362 ----P-WALGGFDKVLLDPPRAGA 380 (443)
T ss_pred ----h-hhcCCCCEEEECcCCcCh
Confidence 0 123579999999998853
No 70
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.36 E-value=1.1e-11 Score=123.86 Aligned_cols=139 Identities=17% Similarity=0.179 Sum_probs=97.4
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
++.+|||+|||+|..++.++...+ .+|+|+|+|+.+++.+++|++++++. +.++.+|+....
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~--------------- 202 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENI--------------- 202 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhC---------------
Confidence 356899999999999999998765 79999999999999999999999874 788888875421
Q ss_pred ccccCCCCCCEEEEccCCcccccccc-CCCCcccCChhH----HHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCcccc
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRR-NPDIPWLRRKND----IKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEES 283 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~-~p~~~~~~~~~~----~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~En 283 (329)
..++||+|++|||+....-... .++..- ..+.. -..-....+++++.+.++|+|||.+++. + .....
T Consensus 203 ----~~~~fDlIvsNPPYi~~~~~~~l~~~v~~-~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE-i--g~~q~ 274 (506)
T PRK01544 203 ----EKQKFDFIVSNPPYISHSEKSEMAIETIN-YEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE-I--GFKQE 274 (506)
T ss_pred ----cCCCccEEEECCCCCCchhhhhcCchhhc-cCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE-E--CCchH
Confidence 2457999999999986544211 111110 00000 0112235678999999999999999875 2 23333
Q ss_pred HHHHHHHHhhC
Q psy15212 284 EEQAIIFSKNH 294 (329)
Q Consensus 284 e~vv~~~l~~~ 294 (329)
+.|..++.++
T Consensus 275 -~~v~~~~~~~ 284 (506)
T PRK01544 275 -EAVTQIFLDH 284 (506)
T ss_pred -HHHHHHHHhc
Confidence 3444444443
No 71
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.35 E-value=1.9e-11 Score=112.92 Aligned_cols=108 Identities=21% Similarity=0.346 Sum_probs=86.3
Q ss_pred cCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhccc
Q psy15212 128 LDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKK 204 (329)
Q Consensus 128 l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~ 204 (329)
..+.+|++|||+|||+|..+..++...+ ++|+++|+++.+++.++++....++. ++++.+|+..++
T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~----------- 141 (272)
T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALP----------- 141 (272)
T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCC-----------
Confidence 4577899999999999998888887665 58999999999999999999998886 788889987654
Q ss_pred ccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 205 TNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 205 ~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
+.++.||.|+++.- +...|+ ..+++++++++|||||+++++.
T Consensus 142 -------~~~~~fD~Vi~~~v------~~~~~d----------------~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 142 -------VADNSVDVIISNCV------INLSPD----------------KERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred -------CCCCceeEEEEcCc------ccCCCC----------------HHHHHHHHHHHcCCCcEEEEEE
Confidence 24568999997631 211111 1357999999999999999874
No 72
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.35 E-value=3.8e-11 Score=106.88 Aligned_cols=151 Identities=18% Similarity=0.246 Sum_probs=93.6
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCC-ceEEEecCccccch-hhhhhhhcccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNL-KATLILSDISKINL-KKLYIDINKKT 205 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~-~v~~~~~D~~~~~~-~~~~~~~~~~~ 205 (329)
.++|.+|||+|||||..+..+++..+ +.|+|+|+++. .+. .++++++|+..... ..+.
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~~v~~i~~D~~~~~~~~~i~------- 110 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIVGVDFLQGDFRDELVLKALL------- 110 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCCCcEEEecCCCChHHHHHHH-------
Confidence 35788999999999999999999875 69999999881 122 27899999887530 0000
Q ss_pred cccccccCCCCCCEEEEcc-CCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccH
Q psy15212 206 NNRFRFYKNKYFDRILADL-PCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESE 284 (329)
Q Consensus 206 ~~~~~~~~~~~fD~Vl~D~-PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene 284 (329)
..+..+.||.|++|+ |.. .|. | ..+..........+|+.+.++|||||+++..+ +..+..
T Consensus 111 ----~~~~~~~~D~V~S~~~~~~-~g~----~-------~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~---~~~~~~ 171 (209)
T PRK11188 111 ----ERVGDSKVQVVMSDMAPNM-SGT----P-------AVDIPRAMYLVELALDMCRDVLAPGGSFVVKV---FQGEGF 171 (209)
T ss_pred ----HHhCCCCCCEEecCCCCcc-CCC----h-------HHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEE---ecCcCH
Confidence 012357899999986 321 111 0 01111112224578999999999999999753 334443
Q ss_pred HHHHHHHhh-CCCcEEecCCCcccCCCCCCCCCCeEEEEE
Q psy15212 285 EQAIIFSKN-HKDSIRLNSPGQLLPTVNKKQDYDGFFYSL 323 (329)
Q Consensus 285 ~vv~~~l~~-~~~~~~~~~~~~~~p~~~~~~~~~gff~a~ 323 (329)
..+-..+.+ +..++... |...+....+.|++|+
T Consensus 172 ~~~l~~l~~~f~~v~~~K------p~ssr~~s~e~~~~~~ 205 (209)
T PRK11188 172 DEYLREIRSLFTKVKVRK------PDSSRARSREVYIVAT 205 (209)
T ss_pred HHHHHHHHhCceEEEEEC------CccccccCceeEEEee
Confidence 333333433 23333332 3222235667888875
No 73
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.35 E-value=2e-11 Score=113.90 Aligned_cols=130 Identities=14% Similarity=0.160 Sum_probs=93.3
Q ss_pred echhHHHHhhhcC--CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCcccc
Q psy15212 117 QDAAAQLAAPLLD--IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKI 192 (329)
Q Consensus 117 Qd~~s~l~~~~l~--~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~ 192 (329)
..+++.++..++. ..+|++|||+|||+|..+..++.+...+|+|+|+++.+++.+++|+..+++. +.+...|....
T Consensus 142 ~h~tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~ 221 (288)
T TIGR00406 142 THPTTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP 221 (288)
T ss_pred CCHHHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc
Confidence 3456666655553 5678999999999999998888653369999999999999999999999886 45555552221
Q ss_pred chhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEE
Q psy15212 193 NLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLL 272 (329)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lv 272 (329)
..++||+|+++... ....+++..+.++|||||+++
T Consensus 222 --------------------~~~~fDlVvan~~~-------------------------~~l~~ll~~~~~~LkpgG~li 256 (288)
T TIGR00406 222 --------------------IEGKADVIVANILA-------------------------EVIKELYPQFSRLVKPGGWLI 256 (288)
T ss_pred --------------------cCCCceEEEEecCH-------------------------HHHHHHHHHHHHHcCCCcEEE
Confidence 24689999987421 112457889999999999999
Q ss_pred EEcCCCCccccHHHHHHHHhhC
Q psy15212 273 FVTCSLWFEESEEQAIIFSKNH 294 (329)
Q Consensus 273 ysTCS~~~~Ene~vv~~~l~~~ 294 (329)
.|.. ..++.++ +...++.+
T Consensus 257 ~sgi--~~~~~~~-v~~~~~~~ 275 (288)
T TIGR00406 257 LSGI--LETQAQS-VCDAYEQG 275 (288)
T ss_pred EEeC--cHhHHHH-HHHHHHcc
Confidence 8764 3333334 44444543
No 74
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.34 E-value=7e-11 Score=111.09 Aligned_cols=193 Identities=19% Similarity=0.157 Sum_probs=118.6
Q ss_pred CCcHHHHHHHHHhCCChHHHHHHHHHhCCCCCeeEEEcCC-C------CCHH---HHHHHHHHCCCeeEEeCCceEEEcC
Q psy15212 30 NYPIWWINQVKITYPNFFQWKNILDVGHKKPPLTLRINQR-K------TTLI---SYNKLLKKSGLETTIIGPLAIKLHT 99 (329)
Q Consensus 30 s~P~w~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~RvN~~-k------~~~~---~~~~~l~~~g~~~~~~~~~~~~~~~ 99 (329)
.+|.++.+.+...+|....|.+.++.+-...|-.+-.+.. . .+.+ .+...|.. +. ++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--l~--p~--------- 88 (314)
T TIGR00452 22 TLPAQIANWQRQQHGLFKQWSNAVEFLPEIKPYRLDLLMLVCNDKSNPLSAGQIKRILEEIMA--LM--PW--------- 88 (314)
T ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHhcCCCCcCeeeccCccccCCCCCCCHHHHHHHHHHHHh--cC--CC---------
Confidence 4666665544456898778999999888877765555442 0 1121 12222222 11 11
Q ss_pred CCCCCCCcccccceEEEechhHHHH----hhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHH
Q psy15212 100 PISISKIPKFFNGFCSIQDAAAQLA----APLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENL 175 (329)
Q Consensus 100 ~~~~~~~~~~~~G~~~~Qd~~s~l~----~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~ 175 (329)
..-+...+|+.+.-+-.|.+. ...+.+.+|.+|||+|||+|..+..++......|+|+|.|+.++..++..-
T Consensus 89 ----~~~~~~l~~~~~~~e~~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~ 164 (314)
T TIGR00452 89 ----RKGPFELSGIKIDSEWRSDIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVR 164 (314)
T ss_pred ----CCCCcccccccCCHHHHHHHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHH
Confidence 111111233333323334332 223356778999999999999998888764468999999999987654433
Q ss_pred HHcCC--ceEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHH
Q psy15212 176 KRLNL--KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKY 253 (329)
Q Consensus 176 ~~~g~--~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~ 253 (329)
+..+. .+.+...|+..++ ....||.|++ .|++-+.++
T Consensus 165 ~~~~~~~~v~~~~~~ie~lp-------------------~~~~FD~V~s------~gvL~H~~d---------------- 203 (314)
T TIGR00452 165 KLLDNDKRAILEPLGIEQLH-------------------ELYAFDTVFS------MGVLYHRKS---------------- 203 (314)
T ss_pred HHhccCCCeEEEECCHHHCC-------------------CCCCcCEEEE------cchhhccCC----------------
Confidence 33222 3667777776654 1247999994 344433221
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCCCc
Q psy15212 254 SCKILNNLWKMLKPGGKLLFVTCSLWF 280 (329)
Q Consensus 254 q~~lL~~a~~~LkpgG~lvysTCS~~~ 280 (329)
....|+++.+.|||||.||.+|..+..
T Consensus 204 p~~~L~el~r~LkpGG~Lvletl~i~g 230 (314)
T TIGR00452 204 PLEHLKQLKHQLVIKGELVLETLVIDG 230 (314)
T ss_pred HHHHHHHHHHhcCCCCEEEEEEEEecC
Confidence 235789999999999999998765443
No 75
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.34 E-value=3.8e-12 Score=113.01 Aligned_cols=117 Identities=24% Similarity=0.326 Sum_probs=85.6
Q ss_pred ceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecC
Q psy15212 112 GFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK-ATLILSD 188 (329)
Q Consensus 112 G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D 188 (329)
|....|-..-....++|+++||++|||+|||+|..|..++.+.+ ++|+++|+++..++.+++|+++++.. +.++.+|
T Consensus 52 ~~~is~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gd 131 (209)
T PF01135_consen 52 GQTISAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGD 131 (209)
T ss_dssp TEEE--HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-
T ss_pred eeechHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcc
Confidence 33343333344455677899999999999999999999999876 68999999999999999999999996 8999999
Q ss_pred ccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCC
Q psy15212 189 ISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPG 268 (329)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~Lkpg 268 (329)
..... .....||+|++.+.|.. +=...++.|++|
T Consensus 132 g~~g~------------------~~~apfD~I~v~~a~~~----------------------------ip~~l~~qL~~g 165 (209)
T PF01135_consen 132 GSEGW------------------PEEAPFDRIIVTAAVPE----------------------------IPEALLEQLKPG 165 (209)
T ss_dssp GGGTT------------------GGG-SEEEEEESSBBSS------------------------------HHHHHTEEEE
T ss_pred hhhcc------------------ccCCCcCEEEEeeccch----------------------------HHHHHHHhcCCC
Confidence 86532 13468999999876541 112234568999
Q ss_pred CEEEEE
Q psy15212 269 GKLLFV 274 (329)
Q Consensus 269 G~lvys 274 (329)
|+||.-
T Consensus 166 GrLV~p 171 (209)
T PF01135_consen 166 GRLVAP 171 (209)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 999953
No 76
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.33 E-value=1.1e-11 Score=108.97 Aligned_cols=138 Identities=12% Similarity=0.213 Sum_probs=97.0
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhcccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
.+.+|||+|||+|..+..+|+..+ ..++|+|+++.+++.+++++.+.++. ++++.+|+..+..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~--------------- 80 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLD--------------- 80 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHH---------------
Confidence 456999999999999999998876 79999999999999999999999886 8999999976430
Q ss_pred cccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHHH
Q psy15212 210 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAII 289 (329)
Q Consensus 210 ~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~ 289 (329)
..+..+.+|.|+++.|.- |........+ -.+.++++.+.+.|||||.|+++|-. ..--++.+ .
T Consensus 81 ~~~~~~~~d~v~~~~pdp------------w~k~~h~~~r--~~~~~~l~~~~r~LkpgG~l~~~td~--~~~~~~~~-~ 143 (194)
T TIGR00091 81 KFFPDGSLSKVFLNFPDP------------WPKKRHNKRR--ITQPHFLKEYANVLKKGGVIHFKTDN--EPLFEDML-K 143 (194)
T ss_pred hhCCCCceeEEEEECCCc------------CCCCCccccc--cCCHHHHHHHHHHhCCCCEEEEEeCC--HHHHHHHH-H
Confidence 112345899999997632 1110000000 12456899999999999999887522 11122222 2
Q ss_pred HHhhCCCcEEec
Q psy15212 290 FSKNHKDSIRLN 301 (329)
Q Consensus 290 ~l~~~~~~~~~~ 301 (329)
.+..+++++.+.
T Consensus 144 ~~~~~~~f~~~~ 155 (194)
T TIGR00091 144 VLSENDLFENTS 155 (194)
T ss_pred HHHhCCCeEecc
Confidence 334556666543
No 77
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.33 E-value=1.3e-11 Score=118.38 Aligned_cols=128 Identities=20% Similarity=0.322 Sum_probs=100.2
Q ss_pred EechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccc
Q psy15212 116 IQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKIN 193 (329)
Q Consensus 116 ~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~ 193 (329)
++|+.-.+. .+....+..+||+|||+|..++++|...+ ..++|+|+++.++..+.+++.+.|+. +.++.+|+..+.
T Consensus 108 ~~d~~~~~~--~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll 185 (390)
T PRK14121 108 ILDIDNFLD--FISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLL 185 (390)
T ss_pred cCCHHHHHH--HhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhh
Confidence 455443322 23345677999999999999999999887 79999999999999999999999987 899999987653
Q ss_pred hhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEE
Q psy15212 194 LKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 273 (329)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvy 273 (329)
..+.++.+|.|++..|+- |..... .++ .+..+|+.+.++|+|||.+.+
T Consensus 186 ----------------~~~~~~s~D~I~lnFPdP------------W~KkrH--RRl--v~~~fL~e~~RvLkpGG~l~l 233 (390)
T PRK14121 186 ----------------ELLPSNSVEKIFVHFPVP------------WDKKPH--RRV--ISEDFLNEALRVLKPGGTLEL 233 (390)
T ss_pred ----------------hhCCCCceeEEEEeCCCC------------ccccch--hhc--cHHHHHHHHHHHcCCCcEEEE
Confidence 123567899999987754 332221 222 367899999999999999999
Q ss_pred EcCC
Q psy15212 274 VTCS 277 (329)
Q Consensus 274 sTCS 277 (329)
.|.+
T Consensus 234 ~TD~ 237 (390)
T PRK14121 234 RTDS 237 (390)
T ss_pred EEEC
Confidence 9886
No 78
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.33 E-value=3.4e-11 Score=109.02 Aligned_cols=121 Identities=17% Similarity=0.129 Sum_probs=93.1
Q ss_pred HHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhh
Q psy15212 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKK 196 (329)
Q Consensus 121 s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~ 196 (329)
.++...++...++.+|||+|||+|.-++.++..++ ++|+++|+++++++.+++|+++.|+. ++++.+|+.+.- +.
T Consensus 57 g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L-~~ 135 (234)
T PLN02781 57 GLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSAL-DQ 135 (234)
T ss_pred HHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHH-HH
Confidence 44555555666678999999999999999988765 79999999999999999999999985 899999987642 11
Q ss_pred hhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 197 LYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
+. .....+.||.|++|++= .....+++.+.++|+|||.++...+
T Consensus 136 l~-----------~~~~~~~fD~VfiDa~k-------------------------~~y~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 136 LL-----------NNDPKPEFDFAFVDADK-------------------------PNYVHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred HH-----------hCCCCCCCCEEEECCCH-------------------------HHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 10 00013589999999751 1133578888999999999997665
Q ss_pred CC
Q psy15212 277 SL 278 (329)
Q Consensus 277 S~ 278 (329)
-+
T Consensus 180 l~ 181 (234)
T PLN02781 180 LW 181 (234)
T ss_pred Cc
Confidence 43
No 79
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.32 E-value=1e-11 Score=122.19 Aligned_cols=111 Identities=19% Similarity=0.334 Sum_probs=84.9
Q ss_pred hhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhccc
Q psy15212 126 PLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKK 204 (329)
Q Consensus 126 ~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~ 204 (329)
.++.+.++++|||+|||+|..++.+|+.. .+|+|+|+++.+++.+++|++.+|+. ++++.+|+.... +.+
T Consensus 286 ~~l~~~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l-~~~------- 356 (431)
T TIGR00479 286 EALELQGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVL-PKQ------- 356 (431)
T ss_pred HHhccCCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHH-HHH-------
Confidence 34456788999999999999999999865 49999999999999999999999986 899999987532 100
Q ss_pred ccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 205 TNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 205 ~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
. .....||+|++|||..|.. .++++... .++|++ ++|.+|.
T Consensus 357 -----~-~~~~~~D~vi~dPPr~G~~------------------------~~~l~~l~-~l~~~~-ivyvsc~ 397 (431)
T TIGR00479 357 -----P-WAGQIPDVLLLDPPRKGCA------------------------AEVLRTII-ELKPER-IVYVSCN 397 (431)
T ss_pred -----H-hcCCCCCEEEECcCCCCCC------------------------HHHHHHHH-hcCCCE-EEEEcCC
Confidence 0 1235799999999987531 23444333 367765 8888896
No 80
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.32 E-value=4.5e-12 Score=117.95 Aligned_cols=150 Identities=19% Similarity=0.314 Sum_probs=104.1
Q ss_pred echhHHHHhhhcC--CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccch
Q psy15212 117 QDAAAQLAAPLLD--IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINL 194 (329)
Q Consensus 117 Qd~~s~l~~~~l~--~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~ 194 (329)
.-++.+++..++. ..+|++|||+|||+|..++.++.+...+|+|+|+++..++.+++|++.+|+..++........
T Consensus 144 ~H~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~~-- 221 (295)
T PF06325_consen 144 HHPTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSEDL-- 221 (295)
T ss_dssp HCHHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSCT--
T ss_pred CCHHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEeccc--
Confidence 3556777777775 678999999999999999988876447999999999999999999999999744433221111
Q ss_pred hhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 195 KKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
...+||+|+.|- +......++....++|+|||+|+.|
T Consensus 222 ------------------~~~~~dlvvANI-------------------------~~~vL~~l~~~~~~~l~~~G~lIlS 258 (295)
T PF06325_consen 222 ------------------VEGKFDLVVANI-------------------------LADVLLELAPDIASLLKPGGYLILS 258 (295)
T ss_dssp ------------------CCS-EEEEEEES--------------------------HHHHHHHHHHCHHHEEEEEEEEEE
T ss_pred ------------------ccccCCEEEECC-------------------------CHHHHHHHHHHHHHhhCCCCEEEEc
Confidence 237899999652 2223456777788899999999975
Q ss_pred cCCCCccccHHHHHHHHhhCCCcEEecCCCcccCCCCCCCCCCeEEEEEEEec
Q psy15212 275 TCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 327 (329)
Q Consensus 275 TCS~~~~Ene~vv~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~gff~a~l~k~ 327 (329)
-+..++.+.+++.+ ++ +++++.. ...+++..-.++|+
T Consensus 259 --GIl~~~~~~v~~a~-~~--g~~~~~~-----------~~~~~W~~l~~~Kk 295 (295)
T PF06325_consen 259 --GILEEQEDEVIEAY-KQ--GFELVEE-----------REEGEWVALVFKKK 295 (295)
T ss_dssp --EEEGGGHHHHHHHH-HT--TEEEEEE-----------EEETTEEEEEEEE-
T ss_pred --cccHHHHHHHHHHH-HC--CCEEEEE-----------EEECCEEEEEEEeC
Confidence 34455555565555 43 7776643 23456666666664
No 81
>PLN02476 O-methyltransferase
Probab=99.32 E-value=5.7e-11 Score=109.43 Aligned_cols=129 Identities=12% Similarity=0.107 Sum_probs=100.5
Q ss_pred EEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCcc
Q psy15212 115 SIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDIS 190 (329)
Q Consensus 115 ~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~ 190 (329)
.+.....++...++...+..+|||+|++.|.-|+.+|..++ ++|+++|.++++++.+++|+++.|+. ++++.+|+.
T Consensus 101 ~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~ 180 (278)
T PLN02476 101 QVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAA 180 (278)
T ss_pred ccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHH
Confidence 44555666677777777788999999999999999998775 79999999999999999999999996 899999987
Q ss_pred ccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCE
Q psy15212 191 KINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 270 (329)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~ 270 (329)
+.- +.+. .....+.||.|++|++= ....+.++.+.++|+|||.
T Consensus 181 e~L-~~l~-----------~~~~~~~FD~VFIDa~K-------------------------~~Y~~y~e~~l~lL~~GGv 223 (278)
T PLN02476 181 ESL-KSMI-----------QNGEGSSYDFAFVDADK-------------------------RMYQDYFELLLQLVRVGGV 223 (278)
T ss_pred HHH-HHHH-----------hcccCCCCCEEEECCCH-------------------------HHHHHHHHHHHHhcCCCcE
Confidence 742 1110 00013589999999971 1245678888999999999
Q ss_pred EEEEcCCCCc
Q psy15212 271 LLFVTCSLWF 280 (329)
Q Consensus 271 lvysTCS~~~ 280 (329)
+|.-..-++.
T Consensus 224 IV~DNvL~~G 233 (278)
T PLN02476 224 IVMDNVLWHG 233 (278)
T ss_pred EEEecCccCC
Confidence 9987665443
No 82
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.31 E-value=3.4e-11 Score=106.12 Aligned_cols=112 Identities=17% Similarity=0.211 Sum_probs=85.0
Q ss_pred HHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhh
Q psy15212 123 LAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDI 201 (329)
Q Consensus 123 l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~ 201 (329)
.....+...++.+|||+|||+|..+..+|+. +.+|+|+|+|+.+++.+++++...++. +++...|+....
T Consensus 21 ~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~-g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~-------- 91 (197)
T PRK11207 21 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN-GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLT-------- 91 (197)
T ss_pred HHHHhcccCCCCcEEEECCCCCHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCC--------
Confidence 3344555667789999999999999999986 459999999999999999999998886 788888876654
Q ss_pred cccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 202 NKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 202 ~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
+ ++.||.|++... +. | ..++ ....+++.+.++|+|||++++.
T Consensus 92 ----------~-~~~fD~I~~~~~------~~------~-~~~~-------~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 92 ----------F-DGEYDFILSTVV------LM------F-LEAK-------TIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred ----------c-CCCcCEEEEecc------hh------h-CCHH-------HHHHHHHHHHHHcCCCcEEEEE
Confidence 1 357999995321 10 0 0111 2456899999999999986554
No 83
>PHA03411 putative methyltransferase; Provisional
Probab=99.30 E-value=6.9e-11 Score=108.15 Aligned_cols=147 Identities=16% Similarity=0.191 Sum_probs=98.2
Q ss_pred CCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccc
Q psy15212 129 DIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 129 ~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
.+.++.+|||+|||+|..+..++.+.+ .+|+++|+++.+++.+++++. .++++++|+..+.
T Consensus 61 ~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~----~v~~v~~D~~e~~-------------- 122 (279)
T PHA03411 61 DAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP----EAEWITSDVFEFE-------------- 122 (279)
T ss_pred ccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc----CCEEEECchhhhc--------------
Confidence 455567999999999999999988764 699999999999999988742 3788999988654
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEE--EEEcCCC-CccccH
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKL--LFVTCSL-WFEESE 284 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~l--vysTCS~-~~~Ene 284 (329)
...+||.|++|||+.....-.+.....|.-.......+ .-.++++.+..+|+|+|.+ +||.--+ |..-..
T Consensus 123 -----~~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l--~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~ 195 (279)
T PHA03411 123 -----SNEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVM--TLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKS 195 (279)
T ss_pred -----ccCCCcEEEEcCCccccCchhhhhhhhhccCccccccc--cHHHHHhhhHheecCCceEEEEEeccccccccCCH
Confidence 24689999999998865433222221221000000000 0246788888999999954 4554222 333444
Q ss_pred HHHHHHHhhCCCcEEec
Q psy15212 285 EQAIIFSKNHKDSIRLN 301 (329)
Q Consensus 285 ~vv~~~l~~~~~~~~~~ 301 (329)
+....+|+.+ +|...+
T Consensus 196 ~~y~~~l~~~-g~~~~~ 211 (279)
T PHA03411 196 NKYLKWSKQT-GLVTYA 211 (279)
T ss_pred HHHHHHHHhc-CcEecC
Confidence 5567778776 555443
No 84
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.30 E-value=2.7e-11 Score=106.85 Aligned_cols=80 Identities=13% Similarity=0.096 Sum_probs=66.2
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhcccccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
.++.+|||+|||+|..++.++.....+|+++|+++..++.+++|++.+|+. ++++.+|+....
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l---------------- 115 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFL---------------- 115 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHH----------------
Confidence 568899999999999998765544479999999999999999999999986 899999986532
Q ss_pred cccCCCCCCEEEEccCCc
Q psy15212 210 RFYKNKYFDRILADLPCT 227 (329)
Q Consensus 210 ~~~~~~~fD~Vl~D~PCs 227 (329)
.. ....||+|++|||+-
T Consensus 116 ~~-~~~~fDlV~~DPPy~ 132 (199)
T PRK10909 116 AQ-PGTPHNVVFVDPPFR 132 (199)
T ss_pred hh-cCCCceEEEECCCCC
Confidence 11 134699999999953
No 85
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.30 E-value=2.9e-11 Score=111.39 Aligned_cols=127 Identities=24% Similarity=0.246 Sum_probs=92.5
Q ss_pred cccceEEEech-hHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEec
Q psy15212 109 FFNGFCSIQDA-AAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILS 187 (329)
Q Consensus 109 ~~~G~~~~Qd~-~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~ 187 (329)
|..|++..... ....+...+.+.++.+|||+|||+|..+..++...+++|+++|+++.+++.++++... .-.+.+..+
T Consensus 28 ~g~~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~-~~~i~~~~~ 106 (263)
T PTZ00098 28 FGEDYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD-KNKIEFEAN 106 (263)
T ss_pred hCCCCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc-CCceEEEEC
Confidence 34455555422 2333445567889999999999999999999876667999999999999999988754 223788889
Q ss_pred CccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHH-HHHHHHHHHHHhcCC
Q psy15212 188 DISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLS-KYSCKILNNLWKMLK 266 (329)
Q Consensus 188 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~-~~q~~lL~~a~~~Lk 266 (329)
|+...+ +.++.||+|++-.- +.+.. .....+|+++.++||
T Consensus 107 D~~~~~------------------~~~~~FD~V~s~~~---------------------l~h~~~~d~~~~l~~i~r~Lk 147 (263)
T PTZ00098 107 DILKKD------------------FPENTFDMIYSRDA---------------------ILHLSYADKKKLFEKCYKWLK 147 (263)
T ss_pred CcccCC------------------CCCCCeEEEEEhhh---------------------HHhCCHHHHHHHHHHHHHHcC
Confidence 987654 34578999985210 11111 124568999999999
Q ss_pred CCCEEEEEc
Q psy15212 267 PGGKLLFVT 275 (329)
Q Consensus 267 pgG~lvysT 275 (329)
|||+++.+.
T Consensus 148 PGG~lvi~d 156 (263)
T PTZ00098 148 PNGILLITD 156 (263)
T ss_pred CCcEEEEEE
Confidence 999999875
No 86
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.30 E-value=3.3e-11 Score=106.07 Aligned_cols=111 Identities=19% Similarity=0.162 Sum_probs=83.5
Q ss_pred hhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccc
Q psy15212 125 APLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKK 204 (329)
Q Consensus 125 ~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~ 204 (329)
...+...++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.++++.+..++++.....|....+
T Consensus 23 ~~~~~~~~~~~vLDiGcG~G~~a~~la~~-g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~----------- 90 (195)
T TIGR00477 23 REAVKTVAPCKTLDLGCGQGRNSLYLSLA-GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAA----------- 90 (195)
T ss_pred HHHhccCCCCcEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcc-----------
Confidence 34555556679999999999999999985 469999999999999999999888887777777765443
Q ss_pred ccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 205 TNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 205 ~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
+ ++.||.|++..+... ... .....+++.+.++|+|||++++.+
T Consensus 91 -------~-~~~fD~I~~~~~~~~-------------~~~-------~~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 91 -------L-NEDYDFIFSTVVFMF-------------LQA-------GRVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred -------c-cCCCCEEEEeccccc-------------CCH-------HHHHHHHHHHHHHhCCCcEEEEEE
Confidence 1 357999996543210 011 123467899999999999866543
No 87
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.30 E-value=6.7e-11 Score=103.36 Aligned_cols=114 Identities=22% Similarity=0.235 Sum_probs=77.9
Q ss_pred CCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccch-hhhhhhhcccc
Q psy15212 129 DIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINL-KKLYIDINKKT 205 (329)
Q Consensus 129 ~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~-~~~~~~~~~~~ 205 (329)
.+++|++|||+|||+|+.+.+++.... ++|+++|+++.+ ... .++++.+|+.+... ..+.
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~~~--~i~~~~~d~~~~~~~~~l~------- 91 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------PIE--NVDFIRGDFTDEEVLNKIR------- 91 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------cCC--CceEEEeeCCChhHHHHHH-------
Confidence 467899999999999999999998764 689999999865 111 26677788765320 0000
Q ss_pred cccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 206 NNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 206 ~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
.....+.||+|++|+++...|.+ . ..... -...+..+|..+.+.|+|||+++..
T Consensus 92 ----~~~~~~~~D~V~~~~~~~~~g~~--------~--~~~~~-~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 92 ----ERVGDDKVDVVMSDAAPNISGYW--------D--IDHLR-SIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred ----HHhCCCCccEEEcCCCCCCCCCc--------c--ccHHH-HHHHHHHHHHHHHHHccCCCEEEEE
Confidence 01234679999999764333332 1 11111 1234678899999999999999975
No 88
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.29 E-value=1.1e-10 Score=106.80 Aligned_cols=129 Identities=19% Similarity=0.245 Sum_probs=88.3
Q ss_pred hHHHHhhhcC--CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhh
Q psy15212 120 AAQLAAPLLD--IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKL 197 (329)
Q Consensus 120 ~s~l~~~~l~--~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~ 197 (329)
.+.++...+. +.++.+|||+|||+|..+..++.....+|+|+|+|+.+++.+++|++.+++...+. +.
T Consensus 105 tt~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~------~~---- 174 (250)
T PRK00517 105 TTRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVY------LP---- 174 (250)
T ss_pred HHHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEE------Ec----
Confidence 3444444443 56789999999999998887776433679999999999999999999988731111 11
Q ss_pred hhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 198 YIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
..+..||.|+++.. ......++..+.+.|||||++++|...
T Consensus 175 --------------~~~~~fD~Vvani~-------------------------~~~~~~l~~~~~~~LkpgG~lilsgi~ 215 (250)
T PRK00517 175 --------------QGDLKADVIVANIL-------------------------ANPLLELAPDLARLLKPGGRLILSGIL 215 (250)
T ss_pred --------------cCCCCcCEEEEcCc-------------------------HHHHHHHHHHHHHhcCCCcEEEEEECc
Confidence 01126999997632 012346788999999999999987543
Q ss_pred CCccccHHHHHHHHhhCCCcEEec
Q psy15212 278 LWFEESEEQAIIFSKNHKDSIRLN 301 (329)
Q Consensus 278 ~~~~Ene~vv~~~l~~~~~~~~~~ 301 (329)
.+..+-+...++++ +++.+.
T Consensus 216 ---~~~~~~v~~~l~~~-Gf~~~~ 235 (250)
T PRK00517 216 ---EEQADEVLEAYEEA-GFTLDE 235 (250)
T ss_pred ---HhhHHHHHHHHHHC-CCEEEE
Confidence 23344455555655 566553
No 89
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.29 E-value=5.7e-11 Score=118.26 Aligned_cols=114 Identities=24% Similarity=0.387 Sum_probs=88.6
Q ss_pred HhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcc
Q psy15212 124 AAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINK 203 (329)
Q Consensus 124 ~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~ 203 (329)
....+.+.++.+|||+|||+|..+..+++..+.+|+|+|+|+.+++.++++....+..+++..+|+...+
T Consensus 258 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~---------- 327 (475)
T PLN02336 258 FVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKT---------- 327 (475)
T ss_pred HHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCC----------
Confidence 3444556788999999999999999999877779999999999999999988755545889999987654
Q ss_pred cccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 204 KTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 204 ~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
+++++||.|++. +++.+.++ ...+|+++.+.|||||+++.++-.
T Consensus 328 --------~~~~~fD~I~s~------~~l~h~~d----------------~~~~l~~~~r~LkpgG~l~i~~~~ 371 (475)
T PLN02336 328 --------YPDNSFDVIYSR------DTILHIQD----------------KPALFRSFFKWLKPGGKVLISDYC 371 (475)
T ss_pred --------CCCCCEEEEEEC------CcccccCC----------------HHHHHHHHHHHcCCCeEEEEEEec
Confidence 245689999952 22222111 246799999999999999988643
No 90
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.29 E-value=7.5e-12 Score=110.18 Aligned_cols=99 Identities=22% Similarity=0.391 Sum_probs=76.1
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
+++|+.|+||+||-|.+++.+|...+ ..|+|+|+++..++.+++|++.++++ +.++++|++.+.
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~------------- 165 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFL------------- 165 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---------------
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhc-------------
Confidence 67899999999999999999998555 68999999999999999999999997 789999998875
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEE
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 273 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvy 273 (329)
....||.|+++.|-++ .++|..+..++++||.+.|
T Consensus 166 ------~~~~~drvim~lp~~~--------------------------~~fl~~~~~~~~~~g~ihy 200 (200)
T PF02475_consen 166 ------PEGKFDRVIMNLPESS--------------------------LEFLDAALSLLKEGGIIHY 200 (200)
T ss_dssp -------TT-EEEEEE--TSSG--------------------------GGGHHHHHHHEEEEEEEEE
T ss_pred ------CccccCEEEECChHHH--------------------------HHHHHHHHHHhcCCcEEEC
Confidence 2578999999999552 2468889999999999877
No 91
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.28 E-value=1.1e-10 Score=110.31 Aligned_cols=105 Identities=14% Similarity=0.193 Sum_probs=82.3
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCC--ceEEEecCccccchhhhhhhhcccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL--KATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~--~v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
+.+|.+|||+|||+|..+..+++. +.+|+|+|.++++++.++.+....+. .++++++|+.++.
T Consensus 129 ~~~g~~ILDIGCG~G~~s~~La~~-g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~-------------- 193 (322)
T PLN02396 129 PFEGLKFIDIGCGGGLLSEPLARM-GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLA-------------- 193 (322)
T ss_pred CCCCCEEEEeeCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhh--------------
Confidence 457889999999999999999864 56999999999999999988776554 3788899987654
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
..+++||+|++ .+++.+ + .-...+|+...++|||||.++++|
T Consensus 194 ----~~~~~FD~Vi~------~~vLeH---------------v-~d~~~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 194 ----DEGRKFDAVLS------LEVIEH---------------V-ANPAEFCKSLSALTIPNGATVLST 235 (322)
T ss_pred ----hccCCCCEEEE------hhHHHh---------------c-CCHHHHHHHHHHHcCCCcEEEEEE
Confidence 23568999995 222221 1 123468999999999999999886
No 92
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.28 E-value=1.7e-10 Score=109.18 Aligned_cols=112 Identities=25% Similarity=0.299 Sum_probs=83.0
Q ss_pred HhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcC--CceEEEecCccccchhhhhhhh
Q psy15212 124 AAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLN--LKATLILSDISKINLKKLYIDI 201 (329)
Q Consensus 124 ~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g--~~v~~~~~D~~~~~~~~~~~~~ 201 (329)
+...+.+.+|.+|||+|||+|..+..++......|+|+|.|+.++...+...+..+ .+++++.+|+..++
T Consensus 114 l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp-------- 185 (322)
T PRK15068 114 VLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLP-------- 185 (322)
T ss_pred HHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCC--------
Confidence 34455566789999999999999999998755689999999998876555444333 24788888887765
Q ss_pred cccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 202 NKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 202 ~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
. .+.||.|++ .|++.+..+ ...+|+.+.+.|+|||.++++|-
T Consensus 186 ----------~-~~~FD~V~s------~~vl~H~~d----------------p~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 186 ----------A-LKAFDTVFS------MGVLYHRRS----------------PLDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred ----------C-cCCcCEEEE------CChhhccCC----------------HHHHHHHHHHhcCCCcEEEEEEE
Confidence 2 468999994 344432211 23578999999999999998753
No 93
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=2.9e-11 Score=118.13 Aligned_cols=111 Identities=23% Similarity=0.356 Sum_probs=88.3
Q ss_pred HhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhc
Q psy15212 124 AAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDIN 202 (329)
Q Consensus 124 ~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~ 202 (329)
+...++..++++|||+.||.|++++++|... .+|+|+|+++..++.+++|++.+|+. +++..+|+..+..
T Consensus 285 a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~-~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~-------- 355 (432)
T COG2265 285 ALEWLELAGGERVLDLYCGVGTFGLPLAKRV-KKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTP-------- 355 (432)
T ss_pred HHHHHhhcCCCEEEEeccCCChhhhhhcccC-CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhh--------
Confidence 3445567788999999999999999999654 49999999999999999999999998 8999999988751
Q ss_pred ccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 203 KKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 203 ~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
.+.....||.|++|||-+|.+ .++++...++ +| -++||++|
T Consensus 356 -------~~~~~~~~d~VvvDPPR~G~~------------------------~~~lk~l~~~-~p-~~IvYVSC 396 (432)
T COG2265 356 -------AWWEGYKPDVVVVDPPRAGAD------------------------REVLKQLAKL-KP-KRIVYVSC 396 (432)
T ss_pred -------hccccCCCCEEEECCCCCCCC------------------------HHHHHHHHhc-CC-CcEEEEeC
Confidence 111345899999999988763 2345555554 33 35899999
No 94
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.27 E-value=1.6e-11 Score=106.87 Aligned_cols=109 Identities=26% Similarity=0.339 Sum_probs=76.5
Q ss_pred CCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhcccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
+|.+|||+|||+|+.++.++.+...+|+.||.++..++.+++|++..++. ++++..|+...- ..+
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l-~~~------------ 108 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFL-LKL------------ 108 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHH-HHH------------
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHH-Hhh------------
Confidence 68999999999999999998876579999999999999999999999986 789999976542 110
Q ss_pred cccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHH--hcCCCCCEEEEEcC
Q psy15212 210 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLW--KMLKPGGKLLFVTC 276 (329)
Q Consensus 210 ~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~--~~LkpgG~lvysTC 276 (329)
. ....+||+|++|||+-.. .. + .+++.... .+|+++|.+|+-+-
T Consensus 109 ~-~~~~~fDiIflDPPY~~~----------------~~--~----~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 109 A-KKGEKFDIIFLDPPYAKG----------------LY--Y----EELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp H-HCTS-EEEEEE--STTSC----------------HH--H----HHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred c-ccCCCceEEEECCCcccc----------------hH--H----HHHHHHHHHCCCCCCCEEEEEEec
Confidence 0 135789999999997621 10 1 22333333 78999998887643
No 95
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.26 E-value=7.3e-12 Score=95.80 Aligned_cols=95 Identities=21% Similarity=0.390 Sum_probs=73.4
Q ss_pred EeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccccccCCCC
Q psy15212 137 LDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKY 216 (329)
Q Consensus 137 LDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (329)
||+|||+|..+..+++..+..|+++|+++.+++.++++....++ .+..+|+..++ +.++.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~~--~~~~~d~~~l~------------------~~~~s 60 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEGV--SFRQGDAEDLP------------------FPDNS 60 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTSTE--EEEESBTTSSS------------------S-TT-
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccCc--hheeehHHhCc------------------ccccc
Confidence 89999999999999998347999999999999999998876554 48889988876 46789
Q ss_pred CCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEE
Q psy15212 217 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 273 (329)
Q Consensus 217 fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvy 273 (329)
||.|++.- ++. | + ..+.++++++.+.|||||++++
T Consensus 61 fD~v~~~~------~~~------~---------~-~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 61 FDVVFSNS------VLH------H---------L-EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp EEEEEEES------HGG------G---------S-SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cccccccc------cee------e---------c-cCHHHHHHHHHHHcCcCeEEeC
Confidence 99999531 111 0 1 3366789999999999999974
No 96
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.26 E-value=2.6e-11 Score=110.62 Aligned_cols=115 Identities=23% Similarity=0.332 Sum_probs=87.9
Q ss_pred EechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchh
Q psy15212 116 IQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLK 195 (329)
Q Consensus 116 ~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~ 195 (329)
+|...+......+...++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.++++.. ...++.+|+..++
T Consensus 26 ~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~~D~s~~~l~~a~~~~~----~~~~~~~d~~~~~-- 98 (251)
T PRK10258 26 LQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER-GSQVTALDLSPPMLAQARQKDA----ADHYLAGDIESLP-- 98 (251)
T ss_pred HHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhCC----CCCEEEcCcccCc--
Confidence 57777777777776666789999999999999888864 4699999999999999887743 2457788887654
Q ss_pred hhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 196 KLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
+.++.||.|+++.+ ..|.. ....+|.++.+.|+|||.++++|
T Consensus 99 ----------------~~~~~fD~V~s~~~------------l~~~~----------d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 99 ----------------LATATFDLAWSNLA------------VQWCG----------NLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred ----------------CCCCcEEEEEECch------------hhhcC----------CHHHHHHHHHHHcCCCeEEEEEe
Confidence 24568999996532 11211 13467899999999999999986
No 97
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.25 E-value=9.5e-11 Score=110.58 Aligned_cols=105 Identities=16% Similarity=0.257 Sum_probs=83.0
Q ss_pred hhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhh
Q psy15212 125 APLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDI 201 (329)
Q Consensus 125 ~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~ 201 (329)
...++++++++|||+|||+|..+..+++..+ +.|+++|+++.+++.++++++++|+. +.++.+|+....
T Consensus 73 l~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~-------- 144 (322)
T PRK13943 73 MEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGV-------- 144 (322)
T ss_pred HHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcc--------
Confidence 3455688999999999999999999998876 58999999999999999999999987 888899976543
Q ss_pred cccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 202 NKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 202 ~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
.....||+|+++.... .+.....+.|+|||+++...
T Consensus 145 ----------~~~~~fD~Ii~~~g~~----------------------------~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 145 ----------PEFAPYDVIFVTVGVD----------------------------EVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ----------cccCCccEEEECCchH----------------------------HhHHHHHHhcCCCCEEEEEe
Confidence 1235799999874311 12233566799999988753
No 98
>KOG2904|consensus
Probab=99.25 E-value=1.4e-10 Score=104.42 Aligned_cols=146 Identities=16% Similarity=0.164 Sum_probs=101.8
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
.+..+||+|||+|.+++.++..++ +.|+|+|+|+.+++.+.+|++++++. +.+++.++..-...
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~------------- 214 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASD------------- 214 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccccccc-------------
Confidence 355899999999999999998777 89999999999999999999999986 66665544321100
Q ss_pred ccc-cCCCCCCEEEEccCCccccccc-cCCCCcccCChhHH---HHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCcccc
Q psy15212 209 FRF-YKNKYFDRILADLPCTGSGVVR-RNPDIPWLRRKNDI---KKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEES 283 (329)
Q Consensus 209 ~~~-~~~~~fD~Vl~D~PCsg~G~~~-~~p~~~~~~~~~~~---~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~En 283 (329)
+. ...+++|.+++||||-..--++ -+|+++.....-.+ ..-......++.-|.++|+|||.+++.+--. .+.
T Consensus 215 -~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~--~~~ 291 (328)
T KOG2904|consen 215 -EHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVER--KEH 291 (328)
T ss_pred -ccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEeccc--ccC
Confidence 00 2357999999999996443332 25655432211111 1223445677888999999999999986532 344
Q ss_pred HHHHHHHHhh
Q psy15212 284 EEQAIIFSKN 293 (329)
Q Consensus 284 e~vv~~~l~~ 293 (329)
...|..++..
T Consensus 292 ~~lv~~~m~s 301 (328)
T KOG2904|consen 292 SYLVRIWMIS 301 (328)
T ss_pred cHHHHHHHHh
Confidence 4556665543
No 99
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.24 E-value=4.8e-11 Score=115.24 Aligned_cols=81 Identities=15% Similarity=0.136 Sum_probs=67.7
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhccccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
..++.+|||+|||+|..++.+|... .+|+|+|+++..++.+++|++.+++. ++++.+|+.++.
T Consensus 231 ~~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~--------------- 294 (374)
T TIGR02085 231 EIPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFA--------------- 294 (374)
T ss_pred hcCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHH---------------
Confidence 3457899999999999999999654 69999999999999999999999985 899999987643
Q ss_pred ccccCCCCCCEEEEccCCcc
Q psy15212 209 FRFYKNKYFDRILADLPCTG 228 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg 228 (329)
.. ....||.|++|||..|
T Consensus 295 -~~-~~~~~D~vi~DPPr~G 312 (374)
T TIGR02085 295 -TA-QMSAPELVLVNPPRRG 312 (374)
T ss_pred -Hh-cCCCCCEEEECCCCCC
Confidence 00 1245999999999754
No 100
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.24 E-value=1.6e-10 Score=105.89 Aligned_cols=114 Identities=22% Similarity=0.336 Sum_probs=85.3
Q ss_pred echhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchh
Q psy15212 117 QDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLK 195 (329)
Q Consensus 117 Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~ 195 (329)
|...+......+.+.++.+|||+|||+|..+..+++..+ ++|+|+|+|+.+++.++++.. .+.++.+|+..+.
T Consensus 16 ~~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~----~~~~~~~d~~~~~-- 89 (258)
T PRK01683 16 RTRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP----DCQFVEADIASWQ-- 89 (258)
T ss_pred hhcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC----CCeEEECchhccC--
Confidence 333333334455677889999999999999999998875 799999999999999987742 2677888876543
Q ss_pred hhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 196 KLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
...+||+|+++.... |.. .+..+++.+.+.|||||+++.++
T Consensus 90 -----------------~~~~fD~v~~~~~l~------------~~~----------d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 90 -----------------PPQALDLIFANASLQ------------WLP----------DHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred -----------------CCCCccEEEEccChh------------hCC----------CHHHHHHHHHHhcCCCcEEEEEC
Confidence 245899999764311 111 13468999999999999998864
No 101
>PHA03412 putative methyltransferase; Provisional
Probab=99.24 E-value=4.8e-11 Score=106.85 Aligned_cols=122 Identities=14% Similarity=0.213 Sum_probs=85.7
Q ss_pred EEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC----CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCcc
Q psy15212 115 SIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD----IKLISVDNNLSRLNMISENLKRLNLKATLILSDIS 190 (329)
Q Consensus 115 ~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~----~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~ 190 (329)
+..+.++.++.. ...+.+|||+|||+|..++.+++.+. ..|+|+|+++.+++.+++|+. .+.++.+|+.
T Consensus 35 TP~~iAr~~~i~---~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~----~~~~~~~D~~ 107 (241)
T PHA03412 35 TPIGLARDFTID---ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP----EATWINADAL 107 (241)
T ss_pred CCHHHHHHHHHh---ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc----CCEEEEcchh
Confidence 344444444322 22367999999999999999998642 599999999999999998864 2678889987
Q ss_pred ccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCE
Q psy15212 191 KINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 270 (329)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~ 270 (329)
... ...+||.|++|||+.-.+. ++...+. + -......+++.|.+++++|+.
T Consensus 108 ~~~-------------------~~~~FDlIIsNPPY~~~~~--~d~~ar~--~------g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 108 TTE-------------------FDTLFDMAISNPPFGKIKT--SDFKGKY--T------GAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred ccc-------------------ccCCccEEEECCCCCCccc--cccCCcc--c------ccHHHHHHHHHHHHHcCCCEE
Confidence 543 2358999999999986442 1111100 0 122456789999998888776
Q ss_pred EE
Q psy15212 271 LL 272 (329)
Q Consensus 271 lv 272 (329)
++
T Consensus 159 IL 160 (241)
T PHA03412 159 II 160 (241)
T ss_pred Ee
Confidence 55
No 102
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.24 E-value=7e-11 Score=114.09 Aligned_cols=112 Identities=23% Similarity=0.245 Sum_probs=86.7
Q ss_pred HHHHhhhcCCC-CCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhh
Q psy15212 121 AQLAAPLLDIR-SGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKL 197 (329)
Q Consensus 121 s~l~~~~l~~~-~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~ 197 (329)
+.+++..+... ++.+|||++||+|..++.+|...+ .+|+++|+++..++.+++|++.+++. ++++.+|+..+.
T Consensus 45 ~~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l---- 120 (382)
T PRK04338 45 SVLVLRAFGPKLPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALL---- 120 (382)
T ss_pred HHHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHH----
Confidence 33444444333 457999999999999999988766 59999999999999999999999997 778999987643
Q ss_pred hhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 198 YIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
. ....||+|++||| |++ ..+|..|++.+++||.+.+| |+
T Consensus 121 ------------~--~~~~fD~V~lDP~--Gs~------------------------~~~l~~al~~~~~~gilyvS-At 159 (382)
T PRK04338 121 ------------H--EERKFDVVDIDPF--GSP------------------------APFLDSAIRSVKRGGLLCVT-AT 159 (382)
T ss_pred ------------h--hcCCCCEEEECCC--CCc------------------------HHHHHHHHHHhcCCCEEEEE-ec
Confidence 0 1357999999998 332 24688888889998866555 44
No 103
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.24 E-value=1e-10 Score=106.70 Aligned_cols=106 Identities=20% Similarity=0.336 Sum_probs=82.8
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhC--C-CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIA--D-IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKK 204 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~--~-~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~ 204 (329)
+.++.+|||+|||+|..+..+++.. + ++++|+|+|+.+++.+++++.+++.. ++++.+|+...+
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~----------- 122 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA----------- 122 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC-----------
Confidence 3578899999999999999888743 3 79999999999999999999988774 889999987654
Q ss_pred ccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHH-HHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 205 TNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLS-KYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 205 ~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~-~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
...+|.|++.-. +..+. ..+..+++++.+.|||||.++.+.-
T Consensus 123 ---------~~~~D~vv~~~~---------------------l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 123 ---------IENASMVVLNFT---------------------LQFLEPSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred ---------CCCCCEEehhhH---------------------HHhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 135899885311 11111 1235689999999999999999863
No 104
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.24 E-value=6.7e-11 Score=108.30 Aligned_cols=103 Identities=15% Similarity=0.168 Sum_probs=79.5
Q ss_pred hhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcc
Q psy15212 125 APLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINK 203 (329)
Q Consensus 125 ~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~ 203 (329)
...+.+.++.+|||+|||+|..+..+++..+ .+|+|+|+|+.+++.++++ + ++++.+|+..+.
T Consensus 22 l~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~----~--~~~~~~d~~~~~---------- 85 (255)
T PRK14103 22 LARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER----G--VDARTGDVRDWK---------- 85 (255)
T ss_pred HHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc----C--CcEEEcChhhCC----------
Confidence 3445567889999999999999999998865 6999999999999988653 2 567788886543
Q ss_pred cccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 204 KTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 204 ~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
..+.||.|++....- |. ..+.++++++.+.|||||+++..
T Consensus 86 ---------~~~~fD~v~~~~~l~------------~~----------~d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 86 ---------PKPDTDVVVSNAALQ------------WV----------PEHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred ---------CCCCceEEEEehhhh------------hC----------CCHHHHHHHHHHhCCCCcEEEEE
Confidence 246899999754311 11 11356899999999999999876
No 105
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.23 E-value=8e-11 Score=107.84 Aligned_cols=105 Identities=21% Similarity=0.287 Sum_probs=82.6
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhccccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
.++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.+++++...|+. ++++++|+.++.
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~-g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~--------------- 106 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL-GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIA--------------- 106 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHh---------------
Confidence 45679999999999999999986 469999999999999999999998874 788999987653
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
. ...+.||+|++.... ..+ .-...+|+.+.++|||||+++...
T Consensus 107 -~-~~~~~fD~V~~~~vl---------------------~~~-~~~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 107 -Q-HLETPVDLILFHAVL---------------------EWV-ADPKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred -h-hcCCCCCEEEehhHH---------------------Hhh-CCHHHHHHHHHHHcCCCeEEEEEE
Confidence 1 134689999964321 111 112467999999999999997653
No 106
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=99.23 E-value=3.5e-11 Score=113.21 Aligned_cols=180 Identities=19% Similarity=0.266 Sum_probs=109.1
Q ss_pred cceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhC--------CCEEEEEeCChhHHHHHHHHHHHcCCc-
Q psy15212 111 NGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA--------DIKLISVDNNLSRLNMISENLKRLNLK- 181 (329)
Q Consensus 111 ~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~--------~~~v~avD~~~~rl~~l~~n~~~~g~~- 181 (329)
.|.++--..-+.+++.++.+.++++|+|.|||+|++.+.+.+.. ...++|+|+++..+..++.|+.-.|..
T Consensus 25 ~G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~ 104 (311)
T PF02384_consen 25 LGQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDN 104 (311)
T ss_dssp CGGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHC
T ss_pred cceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccc
Confidence 36666666777888888899999999999999999999988743 369999999999999999998777764
Q ss_pred --eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCcccccccc--CCCCcccCChhHHHHHHHHHHHH
Q psy15212 182 --ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRR--NPDIPWLRRKNDIKKLSKYSCKI 257 (329)
Q Consensus 182 --v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~--~p~~~~~~~~~~~~~l~~~q~~l 257 (329)
..+..+|..... .......||.||++||.+..+.... ..+.+|..... .-...+..+
T Consensus 105 ~~~~i~~~d~l~~~----------------~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~F 165 (311)
T PF02384_consen 105 SNINIIQGDSLEND----------------KFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFP---PKSNAEYAF 165 (311)
T ss_dssp BGCEEEES-TTTSH----------------SCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSS---STTEHHHHH
T ss_pred cccccccccccccc----------------ccccccccccccCCCCccccccccccccccccccccCC---Cccchhhhh
Confidence 358888876543 1112468999999999987743111 11223332100 000112347
Q ss_pred HHHHHhcCCCCCEEEEEcCC--CCcc-ccHHHHHHHHhhCCCcEEecCCCcccCC
Q psy15212 258 LNNLWKMLKPGGKLLFVTCS--LWFE-ESEEQAIIFSKNHKDSIRLNSPGQLLPT 309 (329)
Q Consensus 258 L~~a~~~LkpgG~lvysTCS--~~~~-Ene~vv~~~l~~~~~~~~~~~~~~~~p~ 309 (329)
+.++++.|++||++++.+-+ +... ......+.+++.+---.++..|..+++.
T Consensus 166 i~~~l~~Lk~~G~~~~Ilp~~~L~~~~~~~~iR~~ll~~~~i~aVI~Lp~~~F~~ 220 (311)
T PF02384_consen 166 IEHALSLLKPGGRAAIILPNGFLFSSSSEKKIRKYLLENGYIEAVISLPSNLFKP 220 (311)
T ss_dssp HHHHHHTEEEEEEEEEEEEHHHHHGSTHHHHHHHHHHHHEEEEEEEE--TTSSSS
T ss_pred HHHHHhhcccccceeEEecchhhhccchHHHHHHHHHhhchhhEEeecccceecc
Confidence 88999999999987766533 2232 2334555666654211234445556654
No 107
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=99.23 E-value=6.1e-11 Score=113.58 Aligned_cols=159 Identities=23% Similarity=0.316 Sum_probs=88.5
Q ss_pred hhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhcc
Q psy15212 125 APLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINK 203 (329)
Q Consensus 125 ~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~ 203 (329)
..++++.++ .|||++||.|.+|+.+|.... +|+|+|+++.+++.+++|++.+++. ++++.+++.++.. .+. ..
T Consensus 190 ~~~l~~~~~-~vlDlycG~G~fsl~la~~~~-~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~-~~~--~~- 263 (352)
T PF05958_consen 190 LEWLDLSKG-DVLDLYCGVGTFSLPLAKKAK-KVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAK-ALA--KA- 263 (352)
T ss_dssp HHHCTT-TT-EEEEES-TTTCCHHHHHCCSS-EEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCC-HHC--CS-
T ss_pred HHHhhcCCC-cEEEEeecCCHHHHHHHhhCC-eEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhH-HHH--hh-
Confidence 445566665 899999999999999997655 9999999999999999999999997 8999888765420 000 00
Q ss_pred ccccccc--ccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCcc
Q psy15212 204 KTNNRFR--FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFE 281 (329)
Q Consensus 204 ~~~~~~~--~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~ 281 (329)
..-.+.. ......+|.|++|||-+|.+- .+++.+.+ + .++||..|. |.
T Consensus 264 r~~~~~~~~~~~~~~~d~vilDPPR~G~~~------------------------~~~~~~~~-~---~~ivYvSCn--P~ 313 (352)
T PF05958_consen 264 REFNRLKGIDLKSFKFDAVILDPPRAGLDE------------------------KVIELIKK-L---KRIVYVSCN--PA 313 (352)
T ss_dssp -GGTTGGGS-GGCTTESEEEE---TT-SCH------------------------HHHHHHHH-S---SEEEEEES---HH
T ss_pred HHHHhhhhhhhhhcCCCEEEEcCCCCCchH------------------------HHHHHHhc-C---CeEEEEECC--HH
Confidence 0000000 012346899999999887642 12222222 2 489999995 32
Q ss_pred ccHHHHHHHHhhCCCcEEecC-CCcccCCCCCCCCCCeEEEEEEEec
Q psy15212 282 ESEEQAIIFSKNHKDSIRLNS-PGQLLPTVNKKQDYDGFFYSLFQKR 327 (329)
Q Consensus 282 Ene~vv~~~l~~~~~~~~~~~-~~~~~p~~~~~~~~~gff~a~l~k~ 327 (329)
-=..-+..+ .+ ++++... +...+|++ +..+- ++.|+|+
T Consensus 314 tlaRDl~~L-~~--~y~~~~v~~~DmFP~T---~HvE~--v~lL~rk 352 (352)
T PF05958_consen 314 TLARDLKIL-KE--GYKLEKVQPVDMFPQT---HHVET--VALLERK 352 (352)
T ss_dssp HHHHHHHHH-HC--CEEEEEEEEE-SSTTS---S--EE--EEEEEE-
T ss_pred HHHHHHHHH-hh--cCEEEEEEEeecCCCC---CcEEE--EEEEEeC
Confidence 212222222 22 4554432 23568876 44444 6777664
No 108
>PRK08317 hypothetical protein; Provisional
Probab=99.22 E-value=1.7e-10 Score=103.40 Aligned_cols=113 Identities=19% Similarity=0.383 Sum_probs=86.8
Q ss_pred hhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhc
Q psy15212 125 APLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDIN 202 (329)
Q Consensus 125 ~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~ 202 (329)
...+.+.++.+|||+|||+|..+..++...+ ++++++|+++.+++.++++....+..+++...|+...+
T Consensus 12 ~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--------- 82 (241)
T PRK08317 12 FELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLP--------- 82 (241)
T ss_pred HHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCC---------
Confidence 3456678899999999999999999998873 79999999999999999984444444788888887654
Q ss_pred ccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 203 KKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 203 ~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
+..+.||.|+++-. +.. ......+++++.++|+|||.++++.+.
T Consensus 83 ---------~~~~~~D~v~~~~~------~~~----------------~~~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 83 ---------FPDGSFDAVRSDRV------LQH----------------LEDPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred ---------CCCCCceEEEEech------hhc----------------cCCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 24568999996422 110 011345789999999999999988764
No 109
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.22 E-value=4.9e-10 Score=99.60 Aligned_cols=121 Identities=17% Similarity=0.206 Sum_probs=99.0
Q ss_pred chhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEe-cCcccc
Q psy15212 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK--ATLIL-SDISKI 192 (329)
Q Consensus 118 d~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~-~D~~~~ 192 (329)
...-.+...++......+||++|++.|.-++.||..++ ++++++|+++++.+.+++|+++.|+. ++++. +|+.+.
T Consensus 45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~ 124 (219)
T COG4122 45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV 124 (219)
T ss_pred hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH
Confidence 55566777777777788999999999999999999887 89999999999999999999999996 67777 587764
Q ss_pred chhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEE
Q psy15212 193 NLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLL 272 (329)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lv 272 (329)
- .....+.||.|+.|+-=+ .+.+.++.+.++|+|||.+|
T Consensus 125 l----------------~~~~~~~fDliFIDadK~-------------------------~yp~~le~~~~lLr~GGliv 163 (219)
T COG4122 125 L----------------SRLLDGSFDLVFIDADKA-------------------------DYPEYLERALPLLRPGGLIV 163 (219)
T ss_pred H----------------HhccCCCccEEEEeCChh-------------------------hCHHHHHHHHHHhCCCcEEE
Confidence 3 111357999999997511 24568999999999999998
Q ss_pred EEcCCCC
Q psy15212 273 FVTCSLW 279 (329)
Q Consensus 273 ysTCS~~ 279 (329)
.-.-.+.
T Consensus 164 ~DNvl~~ 170 (219)
T COG4122 164 ADNVLFG 170 (219)
T ss_pred EeecccC
Confidence 7766655
No 110
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.21 E-value=1.6e-10 Score=111.86 Aligned_cols=114 Identities=25% Similarity=0.329 Sum_probs=86.3
Q ss_pred HHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhh
Q psy15212 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYID 200 (329)
Q Consensus 121 s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~ 200 (329)
...+...+.+++|++|||+|||+|+.+.++++..+.+|+|+|+|+.+++.++++.+ ++.+++...|...+
T Consensus 156 ~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l~v~~~~~D~~~l-------- 225 (383)
T PRK11705 156 LDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GLPVEIRLQDYRDL-------- 225 (383)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cCeEEEEECchhhc--------
Confidence 34455566788999999999999999999998777899999999999999999885 44567777776543
Q ss_pred hcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 201 INKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 201 ~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
++.||.|++- +++.+-+. .....+++.+.++|||||+++..+.+
T Consensus 226 -------------~~~fD~Ivs~------~~~ehvg~--------------~~~~~~l~~i~r~LkpGG~lvl~~i~ 269 (383)
T PRK11705 226 -------------NGQFDRIVSV------GMFEHVGP--------------KNYRTYFEVVRRCLKPDGLFLLHTIG 269 (383)
T ss_pred -------------CCCCCEEEEe------CchhhCCh--------------HHHHHHHHHHHHHcCCCcEEEEEEcc
Confidence 2579999852 22211110 11245789999999999999987643
No 111
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.20 E-value=1.9e-10 Score=99.42 Aligned_cols=110 Identities=24% Similarity=0.341 Sum_probs=82.2
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhccccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
-.|.+|||++||+|+.++.++.+....++.+|.|...++.+++|++.+++. ++++.+|+.... +.
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L-~~------------ 108 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRAL-KQ------------ 108 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHH-Hh------------
Confidence 468999999999999999999886689999999999999999999999964 889999988542 10
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHH-HHHHHhcCCCCCEEEEEc
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKI-LNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~l-L~~a~~~LkpgG~lvysT 275 (329)
.-..+.||.|++|||+- .|. ...+..+ +-.-..+|+|+|.+|.-+
T Consensus 109 --~~~~~~FDlVflDPPy~-~~l-------------------~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 109 --LGTREPFDLVFLDPPYA-KGL-------------------LDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred --cCCCCcccEEEeCCCCc-cch-------------------hhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 01123599999999976 221 1111222 222456799999888543
No 112
>PRK06922 hypothetical protein; Provisional
Probab=99.20 E-value=2.6e-10 Score=114.96 Aligned_cols=126 Identities=14% Similarity=0.213 Sum_probs=90.1
Q ss_pred hcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccc
Q psy15212 127 LLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKT 205 (329)
Q Consensus 127 ~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~ 205 (329)
+++..+|.+|||+|||+|..+..+++..+ ++++|+|+|+.+++.++++....+..+.++.+|+..++
T Consensus 413 i~d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp------------ 480 (677)
T PRK06922 413 ILDYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLS------------ 480 (677)
T ss_pred HhhhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCc------------
Confidence 44555788999999999999999988766 79999999999999999998777766888889987654
Q ss_pred cccccccCCCCCCEEEEccCCccc-cccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCC
Q psy15212 206 NNRFRFYKNKYFDRILADLPCTGS-GVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSL 278 (329)
Q Consensus 206 ~~~~~~~~~~~fD~Vl~D~PCsg~-G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~ 278 (329)
..+.++.||.|++.++--.. ..+. .....| . .....++|+.+.+.|||||+++.+.-++
T Consensus 481 ----~~fedeSFDvVVsn~vLH~L~syIp-~~g~~f--~-------~edl~kiLreI~RVLKPGGrLII~D~v~ 540 (677)
T PRK06922 481 ----SSFEKESVDTIVYSSILHELFSYIE-YEGKKF--N-------HEVIKKGLQSAYEVLKPGGRIIIRDGIM 540 (677)
T ss_pred ----cccCCCCEEEEEEchHHHhhhhhcc-cccccc--c-------HHHHHHHHHHHHHHcCCCcEEEEEeCcc
Confidence 22356789999975431100 0000 000001 1 1234678999999999999999875433
No 113
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.19 E-value=3.2e-10 Score=100.39 Aligned_cols=154 Identities=19% Similarity=0.201 Sum_probs=106.2
Q ss_pred HHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhh
Q psy15212 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKL 197 (329)
Q Consensus 122 ~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~ 197 (329)
++...++......+||++|++.|.-|+++|+.++ ++|+++|+++.+.+.+++++++.|+. ++++.+|+.+.- +.+
T Consensus 35 ~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l-~~l 113 (205)
T PF01596_consen 35 QLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVL-PEL 113 (205)
T ss_dssp HHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHH-HHH
T ss_pred HHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhH-HHH
Confidence 3444444333446999999999999999998876 89999999999999999999999995 899999998752 111
Q ss_pred hhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 198 YIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
. .....+.||.|++|+.=+ .+...++.+.++|+|||.++.-..-
T Consensus 114 ~-----------~~~~~~~fD~VFiDa~K~-------------------------~y~~y~~~~~~ll~~ggvii~DN~l 157 (205)
T PF01596_consen 114 A-----------NDGEEGQFDFVFIDADKR-------------------------NYLEYFEKALPLLRPGGVIIADNVL 157 (205)
T ss_dssp H-----------HTTTTTSEEEEEEESTGG-------------------------GHHHHHHHHHHHEEEEEEEEEETTT
T ss_pred H-----------hccCCCceeEEEEccccc-------------------------chhhHHHHHhhhccCCeEEEEcccc
Confidence 1 001135899999998611 1345677888999999999987655
Q ss_pred CCc------cccHH--HHHHH---HhhCCCcEEecCCCcccCCCCCCCCCCeEEEEE
Q psy15212 278 LWF------EESEE--QAIIF---SKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSL 323 (329)
Q Consensus 278 ~~~------~Ene~--vv~~~---l~~~~~~~~~~~~~~~~p~~~~~~~~~gff~a~ 323 (329)
+.. .++.. .+..| +.++|.+..+- +| -+||..+++
T Consensus 158 ~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~~~l-----lp------igdGl~l~~ 203 (205)
T PF01596_consen 158 WRGSVADPDDEDPKTVAIREFNEYIANDPRFETVL-----LP------IGDGLTLAR 203 (205)
T ss_dssp GGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEEEEE-----EC------STTEEEEEE
T ss_pred ccceecCccchhhhHHHHHHHHHHHHhCCCeeEEE-----EE------eCCeeEEEE
Confidence 432 12222 23344 44567765443 33 458888775
No 114
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.19 E-value=4.4e-11 Score=93.76 Aligned_cols=97 Identities=20% Similarity=0.327 Sum_probs=74.8
Q ss_pred EEeecCCCchHHHHHHHhC--C--CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccccc
Q psy15212 136 VLDACSAPGGKTCHLLEIA--D--IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRF 211 (329)
Q Consensus 136 VLDlcag~G~kt~~la~~~--~--~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 211 (329)
|||+|||+|..+..+++.. + .+++++|+|+.+++.++++....+.+++++++|+.+++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~------------------ 62 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLP------------------ 62 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHH------------------
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCc------------------
Confidence 7999999999999999886 2 69999999999999999999988888999999998865
Q ss_pred cCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCC
Q psy15212 212 YKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 269 (329)
Q Consensus 212 ~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG 269 (329)
...++||.|++ ++. ++. + .+++ .+..++++..++|+|||
T Consensus 63 ~~~~~~D~v~~----~~~-~~~------~-~~~~-------~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 63 FSDGKFDLVVC----SGL-SLH------H-LSPE-------ELEALLRRIARLLRPGG 101 (101)
T ss_dssp HHSSSEEEEEE-----TT-GGG------G-SSHH-------HHHHHHHHHHHTEEEEE
T ss_pred ccCCCeeEEEE----cCC-ccC------C-CCHH-------HHHHHHHHHHHHhCCCC
Confidence 23569999995 211 111 1 1222 25678999999999998
No 115
>PLN02672 methionine S-methyltransferase
Probab=99.19 E-value=1.5e-10 Score=123.12 Aligned_cols=166 Identities=14% Similarity=0.046 Sum_probs=113.3
Q ss_pred cceEEEechhHHHHhhhcCCC-----CCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCC----
Q psy15212 111 NGFCSIQDAAAQLAAPLLDIR-----SGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNL---- 180 (329)
Q Consensus 111 ~G~~~~Qd~~s~l~~~~l~~~-----~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~---- 180 (329)
.|-++..+.+-.++-. |... ++.+|||+|||+|..++.+++..+ .+|+|+|+|+.+++.+++|++++++
T Consensus 93 p~VLIPRpeTE~lve~-L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~ 171 (1082)
T PLN02672 93 PSIFIPEDWSFTFYEG-LNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDG 171 (1082)
T ss_pred CCcccCchhHHHHHHH-HHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCccccc
Confidence 3555556655555544 4322 246899999999999999998876 7999999999999999999998643
Q ss_pred -------------ceEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCcccccccc-CCCCc-------
Q psy15212 181 -------------KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRR-NPDIP------- 239 (329)
Q Consensus 181 -------------~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~-~p~~~------- 239 (329)
+++++++|..... .. ...+||+|+.+||+-..+-+.. .|+++
T Consensus 172 ~~~~~~~~~~l~~rV~f~~sDl~~~~----------------~~-~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~ 234 (1082)
T PLN02672 172 LPVYDGEGKTLLDRVEFYESDLLGYC----------------RD-NNIELDRIVGCIPQILNPNPEAMSKLVTENASEEF 234 (1082)
T ss_pred ccccccccccccccEEEEECchhhhc----------------cc-cCCceEEEEECCCcCCCcchhhcChhhhhcccccc
Confidence 2788999986542 00 1136999999999977664322 22222
Q ss_pred -ccCC-hhHH------HHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHHHHHhhCCCcE
Q psy15212 240 -WLRR-KNDI------KKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSI 298 (329)
Q Consensus 240 -~~~~-~~~~------~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~~~~~~ 298 (329)
+..+ ...+ ..-....++++..+.++|+|||.+++ -+.....+.+.+.++++. ++.
T Consensus 235 ~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l---EiG~~q~~~v~~~l~~~~-gf~ 297 (1082)
T PLN02672 235 LYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF---NMGGRPGQAVCERLFERR-GFR 297 (1082)
T ss_pred ccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE---EECccHHHHHHHHHHHHC-CCC
Confidence 1000 0000 22345678899999999999999985 455666666664555554 343
No 116
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.18 E-value=2e-10 Score=100.57 Aligned_cols=81 Identities=19% Similarity=0.145 Sum_probs=67.1
Q ss_pred CCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhcccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
.|.+|||+|||+|+.++.++.+...+|+++|.++..++.+++|++.+++. ++++.+|+.... ..
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l-~~------------- 114 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRAL-KF------------- 114 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHH-HH-------------
Confidence 58899999999999999999875579999999999999999999999985 789999986542 00
Q ss_pred ccc-CCCCCCEEEEccCCc
Q psy15212 210 RFY-KNKYFDRILADLPCT 227 (329)
Q Consensus 210 ~~~-~~~~fD~Vl~D~PCs 227 (329)
.. ....||+|++|||+.
T Consensus 115 -~~~~~~~~dvv~~DPPy~ 132 (189)
T TIGR00095 115 -LAKKPTFDNVIYLDPPFF 132 (189)
T ss_pred -hhccCCCceEEEECcCCC
Confidence 01 123589999999986
No 117
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.18 E-value=1e-10 Score=112.51 Aligned_cols=92 Identities=14% Similarity=0.124 Sum_probs=66.4
Q ss_pred CCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhccccc-cccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTN-NRFR 210 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~-~~~~ 210 (329)
+.+|||+|||+|..++.++... .+|+|+|+++.+++.+++|++.+|+. ++++.+|+.++. +.+. .....+ ....
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~~-~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l-~~~~--~~~~~~~~~~~ 282 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARNF-RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFT-QAMN--GVREFNRLKGI 282 (362)
T ss_pred CCeEEEEeccccHHHHHHHhhC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHH-HHHh--hcccccccccc
Confidence 3579999999999999998765 49999999999999999999999996 899999987642 1110 000000 0000
Q ss_pred ccCCCCCCEEEEccCCcc
Q psy15212 211 FYKNKYFDRILADLPCTG 228 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~PCsg 228 (329)
.....+||.|++|||.+|
T Consensus 283 ~~~~~~~D~v~lDPPR~G 300 (362)
T PRK05031 283 DLKSYNFSTIFVDPPRAG 300 (362)
T ss_pred cccCCCCCEEEECCCCCC
Confidence 000225999999999764
No 118
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=99.17 E-value=1.6e-10 Score=108.88 Aligned_cols=141 Identities=21% Similarity=0.247 Sum_probs=105.9
Q ss_pred ccceEEEechhHHHHhhhc---------CCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCC
Q psy15212 110 FNGFCSIQDAAAQLAAPLL---------DIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180 (329)
Q Consensus 110 ~~G~~~~Qd~~s~l~~~~l---------~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~ 180 (329)
.+|..+-.|.+......-+ ...+|++|+||+||-|.+|+.+|.....+|+|+|+|+..++.+++|++.+++
T Consensus 157 E~G~~f~vD~~Kv~Fsprl~~ER~Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v 236 (341)
T COG2520 157 ENGCRFKVDVAKVYFSPRLSTERARVAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKV 236 (341)
T ss_pred cCCEEEEEchHHeEECCCchHHHHHHHhhhcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCc
Confidence 4577777888753332222 2567999999999999999999987665699999999999999999999999
Q ss_pred c--eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHH
Q psy15212 181 K--ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKIL 258 (329)
Q Consensus 181 ~--v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL 258 (329)
. +..+++|++... .....||.|++.-|-+ ..+++
T Consensus 237 ~~~v~~i~gD~rev~------------------~~~~~aDrIim~~p~~--------------------------a~~fl 272 (341)
T COG2520 237 EGRVEPILGDAREVA------------------PELGVADRIIMGLPKS--------------------------AHEFL 272 (341)
T ss_pred cceeeEEeccHHHhh------------------hccccCCEEEeCCCCc--------------------------chhhH
Confidence 7 789999999876 1226799999988844 34579
Q ss_pred HHHHhcCCCCCEEEEEcCCCCcc---ccHHHHHHHHhhC
Q psy15212 259 NNLWKMLKPGGKLLFVTCSLWFE---ESEEQAIIFSKNH 294 (329)
Q Consensus 259 ~~a~~~LkpgG~lvysTCS~~~~---Ene~vv~~~l~~~ 294 (329)
..|.+.+++||.+.|-+-.-... ..+..+..+..+.
T Consensus 273 ~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~ 311 (341)
T COG2520 273 PLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSAARKG 311 (341)
T ss_pred HHHHHHhhcCcEEEEEeccchhhcccchHHHHHHHHhhc
Confidence 99999999999887754321111 1335555555444
No 119
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=99.16 E-value=2.9e-10 Score=96.64 Aligned_cols=84 Identities=26% Similarity=0.403 Sum_probs=61.6
Q ss_pred CeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhcccccccccc
Q psy15212 134 MYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNNRFRF 211 (329)
Q Consensus 134 ~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 211 (329)
..|+|+|||.||-++++|.... +|+|+|+++.+++.+++|++-+|+. ++++++|..+.. ..
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~-~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~----------------~~ 63 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD-RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELL----------------KR 63 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHG----------------GG
T ss_pred CEEEEeccCcCHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHH----------------hh
Confidence 3699999999999999998755 9999999999999999999999985 999999998754 11
Q ss_pred cC-CCCCCEEEEccCCcccccccc
Q psy15212 212 YK-NKYFDRILADLPCTGSGVVRR 234 (329)
Q Consensus 212 ~~-~~~fD~Vl~D~PCsg~G~~~~ 234 (329)
.. ...||.|+++||-.|....++
T Consensus 64 ~~~~~~~D~vFlSPPWGGp~Y~~~ 87 (163)
T PF09445_consen 64 LKSNKIFDVVFLSPPWGGPSYSKK 87 (163)
T ss_dssp B------SEEEE---BSSGGGGGS
T ss_pred ccccccccEEEECCCCCCcccccc
Confidence 11 122899999999988777654
No 120
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.13 E-value=6.7e-10 Score=103.54 Aligned_cols=103 Identities=23% Similarity=0.244 Sum_probs=80.0
Q ss_pred CCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRF 211 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 211 (329)
++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.++++++..++.+++...|+....
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~-g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~------------------ 180 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL-GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSAS------------------ 180 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhccc------------------
Confidence 3459999999999999999985 469999999999999999999998888888888876543
Q ss_pred cCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 212 YKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 212 ~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
.+++||.|++...+. . ... .....+++.+.+.|+|||++++.
T Consensus 181 -~~~~fD~I~~~~vl~------~-------l~~-------~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 181 -IQEEYDFILSTVVLM------F-------LNR-------ERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred -ccCCccEEEEcchhh------h-------CCH-------HHHHHHHHHHHHhcCCCcEEEEE
Confidence 246899999643211 0 011 12346889999999999996653
No 121
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.12 E-value=2.3e-10 Score=109.71 Aligned_cols=90 Identities=13% Similarity=0.156 Sum_probs=65.5
Q ss_pred CeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhcccc--ccccc
Q psy15212 134 MYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKT--NNRFR 210 (329)
Q Consensus 134 ~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~--~~~~~ 210 (329)
.+|||+|||+|.+++.++.... +|+|+|+++.+++.+++|++.+|+. ++++.+|+.++. .... ..... .....
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~-~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~-~~~~--~~~~~~~~~~~~ 274 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR-RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFT-QAMN--GVREFRRLKGID 274 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHH-HHHh--hccccccccccc
Confidence 4799999999999999998764 9999999999999999999999996 899999987653 1100 00000 00000
Q ss_pred ccCCCCCCEEEEccCCcc
Q psy15212 211 FYKNKYFDRILADLPCTG 228 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~PCsg 228 (329)
.....||.|++|||-+|
T Consensus 275 -~~~~~~d~v~lDPPR~G 291 (353)
T TIGR02143 275 -LKSYNCSTIFVDPPRAG 291 (353)
T ss_pred -cccCCCCEEEECCCCCC
Confidence 00124899999999654
No 122
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.12 E-value=7.6e-10 Score=95.09 Aligned_cols=83 Identities=19% Similarity=0.243 Sum_probs=69.2
Q ss_pred hhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccc
Q psy15212 125 APLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKK 204 (329)
Q Consensus 125 ~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~ 204 (329)
+..+++.++++|||+|||+|..+..+++. +.+|+++|+++.+++.+++++... -+++++++|+.+..
T Consensus 6 ~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~~-~~v~ii~~D~~~~~----------- 72 (169)
T smart00650 6 VRAANLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAAA-DNLTVIHGDALKFD----------- 72 (169)
T ss_pred HHhcCCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhccC-CCEEEEECchhcCC-----------
Confidence 34556778899999999999999999987 469999999999999999998652 24789999998865
Q ss_pred ccccccccCCCCCCEEEEccCCc
Q psy15212 205 TNNRFRFYKNKYFDRILADLPCT 227 (329)
Q Consensus 205 ~~~~~~~~~~~~fD~Vl~D~PCs 227 (329)
..+..||.|+.|+|+.
T Consensus 73 -------~~~~~~d~vi~n~Py~ 88 (169)
T smart00650 73 -------LPKLQPYKVVGNLPYN 88 (169)
T ss_pred -------ccccCCCEEEECCCcc
Confidence 2334699999999975
No 123
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.12 E-value=4.3e-10 Score=97.59 Aligned_cols=164 Identities=20% Similarity=0.238 Sum_probs=102.0
Q ss_pred EEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 114 CSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 114 ~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.|-|.+-.++...+|.-..-.++||+|||.|..|.+||.+.. .++++|+++..++.+++++.... .|++.+.|.....
T Consensus 25 ~YE~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rCd-~LlavDis~~Al~~Ar~Rl~~~~-~V~~~~~dvp~~~ 102 (201)
T PF05401_consen 25 WYERRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPRCD-RLLAVDISPRALARARERLAGLP-HVEWIQADVPEFW 102 (201)
T ss_dssp HHHHHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGEE-EEEEEES-HHHHHHHHHHTTT-S-SEEEEES-TTT--
T ss_pred HHHHHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHhhC-ceEEEeCCHHHHHHHHHhcCCCC-CeEEEECcCCCCC
Confidence 344544444444344434446899999999999999999875 99999999999999999997542 3899999986643
Q ss_pred hhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCCh-hHHHHHHHHHHHHHHHHHhcCCCCCEEE
Q psy15212 194 LKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRK-NDIKKLSKYSCKILNNLWKMLKPGGKLL 272 (329)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~-~~~~~l~~~q~~lL~~a~~~LkpgG~lv 272 (329)
+.++||+|++ | ++.+..+. ++ ...++......|+|||.||
T Consensus 103 -------------------P~~~FDLIV~----S---------EVlYYL~~~~~-------L~~~l~~l~~~L~pgG~LV 143 (201)
T PF05401_consen 103 -------------------PEGRFDLIVL----S---------EVLYYLDDAED-------LRAALDRLVAALAPGGHLV 143 (201)
T ss_dssp --------------------SS-EEEEEE----E---------S-GGGSSSHHH-------HHHHHHHHHHTEEEEEEEE
T ss_pred -------------------CCCCeeEEEE----e---------hHhHcCCCHHH-------HHHHHHHHHHHhCCCCEEE
Confidence 5689999994 3 33344443 33 3456788888999999999
Q ss_pred EEc-----CC--CCccccHHHHHHHHhhC-CCcEEecCCCcccCCCCCCCCCCeEEEEEEEec
Q psy15212 273 FVT-----CS--LWFEESEEQAIIFSKNH-KDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 327 (329)
Q Consensus 273 ysT-----CS--~~~~Ene~vv~~~l~~~-~~~~~~~~~~~~~p~~~~~~~~~gff~a~l~k~ 327 (329)
..+ |+ -|+. ..+-|..+++++ -.++.+... +. ...+++.+|+|+|.
T Consensus 144 ~g~~rd~~c~~wgh~~-ga~tv~~~~~~~~~~~~~~~~~-----~~---~~~~~~~~~~~~~~ 197 (201)
T PF05401_consen 144 FGHARDANCRRWGHAA-GAETVLEMLQEHLTEVERVECR-----GG---SPNEDCLLARFRNP 197 (201)
T ss_dssp EEEE-HHHHHHTT-S---HHHHHHHHHHHSEEEEEEEEE------S---STTSEEEEEEEE--
T ss_pred EEEecCCcccccCccc-chHHHHHHHHHHhhheeEEEEc-----CC---CCCCceEeeeecCC
Confidence 975 33 2233 444445555443 233333221 11 45679999999885
No 124
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.11 E-value=8.1e-10 Score=98.90 Aligned_cols=102 Identities=21% Similarity=0.267 Sum_probs=80.6
Q ss_pred CeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhccccccccc
Q psy15212 134 MYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 134 ~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
++|||+|||+|+.+..+++..+ .+|+++|+|+..++.+++++...|+. ++++..|+...+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~----------------- 63 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDP----------------- 63 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCC-----------------
Confidence 3799999999999999998875 79999999999999999999998875 788888875533
Q ss_pred ccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 211 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
..+.||+|++ .+++. . ......+++.+.++|||||+++.++.
T Consensus 64 --~~~~fD~I~~------~~~l~---------------~-~~~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 64 --FPDTYDLVFG------FEVIH---------------H-IKDKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred --CCCCCCEeeh------HHHHH---------------h-CCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 1357999983 11111 1 11235689999999999999998753
No 125
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=99.11 E-value=3.6e-10 Score=108.69 Aligned_cols=117 Identities=19% Similarity=0.215 Sum_probs=88.0
Q ss_pred echhHHHHhhhcCCCCC---CeEEeecCCCchHHHHHHHhC-C-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCcc
Q psy15212 117 QDAAAQLAAPLLDIRSG---MYVLDACSAPGGKTCHLLEIA-D-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDIS 190 (329)
Q Consensus 117 Qd~~s~l~~~~l~~~~g---~~VLDlcag~G~kt~~la~~~-~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~ 190 (329)
.|.+-..+..+.....+ -+|||++||+|..++.++... + .+|+++|+++..++.+++|++.+++. +++++.|+.
T Consensus 26 RDlsv~~~~~~~~~~~~~~~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~ 105 (374)
T TIGR00308 26 RDLSVTCIQAFDNLYGKECYINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAA 105 (374)
T ss_pred ccHHHHHHHHHHHhhCCcCCCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHH
Confidence 34444333333333333 489999999999999999875 3 69999999999999999999999987 889999988
Q ss_pred ccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCE
Q psy15212 191 KINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 270 (329)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~ 270 (329)
.+. .. ...+||+|.+||+-+ . ..+|..|.+.+++||.
T Consensus 106 ~~l----------------~~-~~~~fDvIdlDPfGs--~------------------------~~fld~al~~~~~~gl 142 (374)
T TIGR00308 106 NVL----------------RY-RNRKFHVIDIDPFGT--P------------------------APFVDSAIQASAERGL 142 (374)
T ss_pred HHH----------------HH-hCCCCCEEEeCCCCC--c------------------------HHHHHHHHHhcccCCE
Confidence 753 11 135799999999622 1 2478999999999985
Q ss_pred EEEEcCC
Q psy15212 271 LLFVTCS 277 (329)
Q Consensus 271 lvysTCS 277 (329)
|. .|||
T Consensus 143 L~-vTaT 148 (374)
T TIGR00308 143 LL-VTAT 148 (374)
T ss_pred EE-EEec
Confidence 54 4444
No 126
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.10 E-value=1.5e-09 Score=98.37 Aligned_cols=106 Identities=16% Similarity=0.318 Sum_probs=81.3
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCC--ceEEEecCccccchhhhhhhhccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNL--KATLILSDISKINLKKLYIDINKK 204 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~--~v~~~~~D~~~~~~~~~~~~~~~~ 204 (329)
+.++.+|||+|||+|..+..+++.. +.+++++|+|+.+++.++++++..+. .++++.+|+...+
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~----------- 119 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE----------- 119 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-----------
Confidence 3577899999999999999999864 26999999999999999999988765 3789999988764
Q ss_pred ccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 205 TNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 205 ~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
...+|.|++.-. +. |. .. .....+++++.+.|+|||.++.+.
T Consensus 120 ---------~~~~d~v~~~~~------l~------~~-~~-------~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 120 ---------IKNASMVILNFT------LQ------FL-PP-------EDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred ---------CCCCCEEeeecc------hh------hC-CH-------HHHHHHHHHHHHhcCCCeEEEEee
Confidence 135898874221 10 10 11 113468999999999999999874
No 127
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.10 E-value=2.7e-09 Score=95.87 Aligned_cols=115 Identities=24% Similarity=0.408 Sum_probs=87.4
Q ss_pred HHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhh
Q psy15212 123 LAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLY 198 (329)
Q Consensus 123 l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~ 198 (329)
.....+.+.++.+|||+|||+|..+..++...+ .+++++|+++.+++.+++++...+.. +.++.+|+....
T Consensus 42 ~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----- 116 (239)
T PRK00216 42 KTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP----- 116 (239)
T ss_pred HHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC-----
Confidence 344455566788999999999999999998875 79999999999999999998876553 788888887654
Q ss_pred hhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 199 IDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
...+.||+|++.- ++...+ ....+|+.+.++|+|||.+++++-+
T Consensus 117 -------------~~~~~~D~I~~~~------~l~~~~----------------~~~~~l~~~~~~L~~gG~li~~~~~ 160 (239)
T PRK00216 117 -------------FPDNSFDAVTIAF------GLRNVP----------------DIDKALREMYRVLKPGGRLVILEFS 160 (239)
T ss_pred -------------CCCCCccEEEEec------ccccCC----------------CHHHHHHHHHHhccCCcEEEEEEec
Confidence 2346899998521 111111 1245788999999999999887544
No 128
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.09 E-value=1.3e-09 Score=83.15 Aligned_cols=102 Identities=22% Similarity=0.307 Sum_probs=80.1
Q ss_pred eEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhcccccccccccC
Q psy15212 135 YVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNRFRFYK 213 (329)
Q Consensus 135 ~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (329)
+|+|+|||+|..+..++.....+++++|+++..++.++++....+.. ++++..|..+.. . ..
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~-~~ 63 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELP----------------P-EA 63 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhc----------------c-cc
Confidence 58999999999999998733379999999999999988655444443 788888887754 1 13
Q ss_pred CCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 214 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 214 ~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
...||.|+++++|... ...+..+++.+.+.+++||.++++
T Consensus 64 ~~~~d~i~~~~~~~~~---------------------~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 64 DESFDVIISDPPLHHL---------------------VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred CCceEEEEEccceeeh---------------------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 4689999999998742 223567889999999999999876
No 129
>PRK00811 spermidine synthase; Provisional
Probab=99.09 E-value=2.5e-09 Score=99.53 Aligned_cols=111 Identities=21% Similarity=0.255 Sum_probs=83.1
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcC--C----ceEEEecCccccchhhhhhhhccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLN--L----KATLILSDISKINLKKLYIDINKK 204 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g--~----~v~~~~~D~~~~~~~~~~~~~~~~ 204 (329)
...+|||+|||.|+.+..+++..+ .+|+++|+++..++.+++.+...+ . +++++.+|+..+.
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l----------- 144 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFV----------- 144 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHH-----------
Confidence 456999999999999999987644 699999999999999999987642 2 2789999998753
Q ss_pred ccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 205 TNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 205 ~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
.. ..++||+|++|.+-. .| | . ..+ ...++++.+.+.|+|||.++.-+-+
T Consensus 145 -----~~-~~~~yDvIi~D~~dp-~~-----~-------~---~~l--~t~ef~~~~~~~L~~gGvlv~~~~~ 193 (283)
T PRK00811 145 -----AE-TENSFDVIIVDSTDP-VG-----P-------A---EGL--FTKEFYENCKRALKEDGIFVAQSGS 193 (283)
T ss_pred -----hh-CCCcccEEEECCCCC-CC-----c-------h---hhh--hHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 11 246899999996411 00 0 0 011 2357888899999999998875433
No 130
>KOG1270|consensus
Probab=99.09 E-value=4.8e-10 Score=100.66 Aligned_cols=103 Identities=21% Similarity=0.281 Sum_probs=76.5
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-------eEEEecCccccchhhhhhhhc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-------ATLILSDISKINLKKLYIDIN 202 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-------v~~~~~D~~~~~~~~~~~~~~ 202 (329)
+..|.+|||+|||.|-.+.+||.+ ++.|+|+|.++.+++.+++.....-.. +++.+.|+....
T Consensus 87 ~~~g~~ilDvGCGgGLLSepLArl-ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~--------- 156 (282)
T KOG1270|consen 87 PLLGMKILDVGCGGGLLSEPLARL-GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT--------- 156 (282)
T ss_pred ccCCceEEEeccCccccchhhHhh-CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---------
Confidence 445788999999999999999974 579999999999999999983322111 223334433322
Q ss_pred ccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 203 KKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 203 ~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
+.||.|+| | ++.++.+...+++...+++|||||+|+.+|-
T Consensus 157 ------------~~fDaVvc----s------------------evleHV~dp~~~l~~l~~~lkP~G~lfitti 196 (282)
T KOG1270|consen 157 ------------GKFDAVVC----S------------------EVLEHVKDPQEFLNCLSALLKPNGRLFITTI 196 (282)
T ss_pred ------------cccceeee----H------------------HHHHHHhCHHHHHHHHHHHhCCCCceEeeeh
Confidence 46999994 2 3444444456799999999999999999863
No 131
>PRK04457 spermidine synthase; Provisional
Probab=99.06 E-value=4.8e-09 Score=96.56 Aligned_cols=129 Identities=13% Similarity=0.084 Sum_probs=91.3
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCC--ceEEEecCccccchhhhhhhhcccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNL--KATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~--~v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
.++.+|||+|+|.|..+..+++..+ .+|+++|+++..++.+++++...+. +++++.+|+..+-
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l-------------- 130 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYI-------------- 130 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHH--------------
Confidence 3456899999999999999998876 7999999999999999999865543 3889999988753
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHH
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQA 287 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv 287 (329)
.. ..++||+|++|+- .+.+. |. +. ...++++.+.+.|+|||.++.-..+-.+ .....+
T Consensus 131 --~~-~~~~yD~I~~D~~-~~~~~----~~--~l-----------~t~efl~~~~~~L~pgGvlvin~~~~~~-~~~~~l 188 (262)
T PRK04457 131 --AV-HRHSTDVILVDGF-DGEGI----ID--AL-----------CTQPFFDDCRNALSSDGIFVVNLWSRDK-RYDRYL 188 (262)
T ss_pred --Hh-CCCCCCEEEEeCC-CCCCC----cc--cc-----------CcHHHHHHHHHhcCCCcEEEEEcCCCch-hHHHHH
Confidence 11 2358999999963 22221 11 00 1257899999999999999885443222 223445
Q ss_pred HHHHhhCC
Q psy15212 288 IIFSKNHK 295 (329)
Q Consensus 288 ~~~l~~~~ 295 (329)
+.+-+.++
T Consensus 189 ~~l~~~F~ 196 (262)
T PRK04457 189 ERLESSFE 196 (262)
T ss_pred HHHHHhcC
Confidence 54444443
No 132
>KOG2671|consensus
Probab=99.05 E-value=2e-10 Score=106.33 Aligned_cols=160 Identities=19% Similarity=0.169 Sum_probs=115.8
Q ss_pred hhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHH-------HHHHHHHHcCCc---eEEEecC
Q psy15212 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLN-------MISENLKRLNLK---ATLILSD 188 (329)
Q Consensus 119 ~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~-------~l~~n~~~~g~~---v~~~~~D 188 (329)
.-|.+.+....++||+.|.|.+.|+|+.....|. .|+.|+|-||+-.++. ..+.|++++|.. ..++.+|
T Consensus 195 eLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~-FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D 273 (421)
T KOG2671|consen 195 ELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAH-FGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTAD 273 (421)
T ss_pred hHHHHHhhhhccCCCCEEecCccccCceeeehhh-hcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeec
Confidence 3366667777799999999999999999888886 5679999999988777 478899999975 6789999
Q ss_pred ccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccC---CCCccc--------CChhHHHHHHHHHHHH
Q psy15212 189 ISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRN---PDIPWL--------RRKNDIKKLSKYSCKI 257 (329)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~---p~~~~~--------~~~~~~~~l~~~q~~l 257 (329)
..+.+ +.....||.|+||||+.----.++. -..+.. ........+..+...+
T Consensus 274 ~sn~~-----------------~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dl 336 (421)
T KOG2671|consen 274 FSNPP-----------------LRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDL 336 (421)
T ss_pred ccCcc-----------------hhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhH
Confidence 98875 3346789999999998522111111 111100 0112344666777889
Q ss_pred HHHHHhcCCCCCEEEEEcCCCCccccHHHHHHHHhhCCCcEEe
Q psy15212 258 LNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300 (329)
Q Consensus 258 L~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~~~~~~~~ 300 (329)
|.-+++.|..||++|+ +.|.-+|+.....+-.|+.+.++
T Consensus 337 l~fss~~L~~ggrlv~----w~p~~~e~~~~~~~P~h~~lsl~ 375 (421)
T KOG2671|consen 337 LCFSSRRLVDGGRLVF----WLPTITEEYGEDDIPSHPYLSLI 375 (421)
T ss_pred HHhhHhhhhcCceEEE----ecCchhhccCcccCCCCcchhhh
Confidence 9999999999999995 34566666666666666666544
No 133
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.05 E-value=1.7e-09 Score=94.51 Aligned_cols=119 Identities=18% Similarity=0.214 Sum_probs=82.2
Q ss_pred EechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchh
Q psy15212 116 IQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLK 195 (329)
Q Consensus 116 ~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~ 195 (329)
.....|.+. .+++.-++.++||+|||.|.-++.+|++ |-.|+|+|+|+..++.+++..++.+++++....|.....
T Consensus 15 ~~~~hs~v~-~a~~~~~~g~~LDlgcG~GRNalyLA~~-G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~-- 90 (192)
T PF03848_consen 15 LTPTHSEVL-EAVPLLKPGKALDLGCGEGRNALYLASQ-GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFD-- 90 (192)
T ss_dssp B----HHHH-HHCTTS-SSEEEEES-TTSHHHHHHHHT-T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS--
T ss_pred CCCCcHHHH-HHHhhcCCCcEEEcCCCCcHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcc--
Confidence 334445544 3445445669999999999999999985 559999999999999999999999999999999987765
Q ss_pred hhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 196 KLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
.++.||.|++. .++.. . .++. ..++++..-+.++|||++++.|
T Consensus 91 -----------------~~~~yD~I~st------~v~~f------L-~~~~-------~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 91 -----------------FPEEYDFIVST------VVFMF------L-QREL-------RPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp ------------------TTTEEEEEEE------SSGGG------S--GGG-------HHHHHHHHHHTEEEEEEEEEEE
T ss_pred -----------------ccCCcCEEEEE------EEecc------C-CHHH-------HHHHHHHHHhhcCCcEEEEEEE
Confidence 23679999842 22211 1 1111 2346777788899999999854
No 134
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.04 E-value=2.6e-10 Score=100.54 Aligned_cols=115 Identities=26% Similarity=0.434 Sum_probs=87.7
Q ss_pred hhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc---eEEEecCccccchhhhhhhh
Q psy15212 125 APLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK---ATLILSDISKINLKKLYIDI 201 (329)
Q Consensus 125 ~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~---v~~~~~D~~~~~~~~~~~~~ 201 (329)
+....|+.|++|||.|.|-|..++..+++...+|+.+|.++.-++.+.-|--..++. ++++.+|+.+.-
T Consensus 127 v~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V-------- 198 (287)
T COG2521 127 VELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVV-------- 198 (287)
T ss_pred hheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHH--------
Confidence 345567889999999999999999998865469999999999999888775444442 689999998764
Q ss_pred cccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 202 NKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 202 ~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
..+.+++||.||-|||-.+. .. ++. -.++-++.+++|||||+|+--
T Consensus 199 --------~~~~D~sfDaIiHDPPRfS~-------------Ag-eLY-----seefY~El~RiLkrgGrlFHY 244 (287)
T COG2521 199 --------KDFDDESFDAIIHDPPRFSL-------------AG-ELY-----SEEFYRELYRILKRGGRLFHY 244 (287)
T ss_pred --------hcCCccccceEeeCCCccch-------------hh-hHh-----HHHHHHHHHHHcCcCCcEEEE
Confidence 33567899999999994321 11 111 235778888999999988743
No 135
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.01 E-value=4.9e-09 Score=98.58 Aligned_cols=122 Identities=16% Similarity=0.203 Sum_probs=90.8
Q ss_pred HHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhh
Q psy15212 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKL 197 (329)
Q Consensus 121 s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~ 197 (329)
...+...++..++.+|||+|||+|..+..+++..+ .+++++|. +..++.+++++++.|+. ++++.+|+.+..
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~---- 212 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES---- 212 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC----
Confidence 34445556677889999999999999999999887 79999997 78999999999999985 889999987643
Q ss_pred hhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 198 YIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
+ ..+|.|++ + +++. .+..+ .-.++|+++.+.|+|||+++.....
T Consensus 213 --------------~--~~~D~v~~----~--~~lh-------~~~~~-------~~~~il~~~~~~L~pgG~l~i~d~~ 256 (306)
T TIGR02716 213 --------------Y--PEADAVLF----C--RILY-------SANEQ-------LSTIMCKKAFDAMRSGGRLLILDMV 256 (306)
T ss_pred --------------C--CCCCEEEe----E--hhhh-------cCChH-------HHHHHHHHHHHhcCCCCEEEEEEec
Confidence 1 23798874 1 1111 11111 1246899999999999999887654
Q ss_pred CCcccc
Q psy15212 278 LWFEES 283 (329)
Q Consensus 278 ~~~~En 283 (329)
+...++
T Consensus 257 ~~~~~~ 262 (306)
T TIGR02716 257 IDDPEN 262 (306)
T ss_pred cCCCCC
Confidence 444333
No 136
>PLN03075 nicotianamine synthase; Provisional
Probab=99.01 E-value=2.7e-09 Score=99.05 Aligned_cols=105 Identities=17% Similarity=0.167 Sum_probs=81.5
Q ss_pred CCCeEEeecCCCchHHHHHHH--hCC-CEEEEEeCChhHHHHHHHHHHH-cCCc--eEEEecCccccchhhhhhhhcccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLE--IAD-IKLISVDNNLSRLNMISENLKR-LNLK--ATLILSDISKINLKKLYIDINKKT 205 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~--~~~-~~v~avD~~~~rl~~l~~n~~~-~g~~--v~~~~~D~~~~~~~~~~~~~~~~~ 205 (329)
++++|+|+|||||+.|..++. +.+ ++++++|+++.+++.+++++++ .|+. +++..+|+.+..
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~------------ 190 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVT------------ 190 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcc------------
Confidence 668999999999987666543 344 7999999999999999999965 7774 899999998753
Q ss_pred cccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 206 NNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 206 ~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
. ..+.||+|++++ +-+ |. .+.+.++|++..+.|+|||.+++-+
T Consensus 191 ----~--~l~~FDlVF~~A-Li~-----------~d---------k~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 191 ----E--SLKEYDVVFLAA-LVG-----------MD---------KEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred ----c--ccCCcCEEEEec-ccc-----------cc---------cccHHHHHHHHHHhcCCCcEEEEec
Confidence 1 136799999873 110 10 0125678999999999999999886
No 137
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=6.5e-09 Score=91.15 Aligned_cols=158 Identities=20% Similarity=0.220 Sum_probs=101.5
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccch-hhhhhhhccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINL-KKLYIDINKKTN 206 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~-~~~~~~~~~~~~ 206 (329)
+++|..|+|+||+|||.+-.+++.++ +.|+|+|+.+-..- . .+.++.+|++.... ..+.
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~--------~--~V~~iq~d~~~~~~~~~l~-------- 104 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI--------P--GVIFLQGDITDEDTLEKLL-------- 104 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC--------C--CceEEeeeccCccHHHHHH--------
Confidence 46799999999999999999999887 57999999765431 1 17889999887541 1110
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHH
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQ 286 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~v 286 (329)
..+....+|+|++|+----+|.. ... ......+-...++-|...|+|||.++ |.....++++.
T Consensus 105 ---~~l~~~~~DvV~sD~ap~~~g~~--------~~D---h~r~~~L~~~a~~~a~~vL~~~G~fv---~K~fqg~~~~~ 167 (205)
T COG0293 105 ---EALGGAPVDVVLSDMAPNTSGNR--------SVD---HARSMYLCELALEFALEVLKPGGSFV---AKVFQGEDFED 167 (205)
T ss_pred ---HHcCCCCcceEEecCCCCcCCCc--------ccc---HHHHHHHHHHHHHHHHHeeCCCCeEE---EEEEeCCCHHH
Confidence 12234568999999875545542 111 12222233445677888999999998 45666777777
Q ss_pred HHHHHhhCCCcEEecCCCcccCCCCCCCCCCeEEEEEEEec
Q psy15212 287 AIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 327 (329)
Q Consensus 287 v~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~gff~a~l~k~ 327 (329)
+-+.++++-......- |...+....+=|++++..|.
T Consensus 168 ~l~~~~~~F~~v~~~K-----P~aSR~~S~E~y~v~~~~~~ 203 (205)
T COG0293 168 LLKALRRLFRKVKIFK-----PKASRKRSREIYLVAKGFKG 203 (205)
T ss_pred HHHHHHHhhceeEEec-----CccccCCCceEEEEEecccc
Confidence 6677766522222211 22222244577888876554
No 138
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.01 E-value=2.2e-10 Score=89.22 Aligned_cols=97 Identities=27% Similarity=0.337 Sum_probs=60.6
Q ss_pred EeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhcccccccccccCC
Q psy15212 137 LDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNRFRFYKN 214 (329)
Q Consensus 137 LDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (329)
||+|||+|..+..+++..+ .+++++|+|+.+++.+++++...+.. ...+..+..+.. .....
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~ 64 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLF----------------DYDPP 64 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS-------------------CCC-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChh----------------hcccc
Confidence 7999999999999999876 79999999999999999999988754 344443333322 11123
Q ss_pred CCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEE
Q psy15212 215 KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKL 271 (329)
Q Consensus 215 ~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~l 271 (329)
++||.|++- +++.+- +....+|+++.++|+|||+|
T Consensus 65 ~~fD~V~~~------~vl~~l----------------~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 65 ESFDLVVAS------NVLHHL----------------EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---SEEEEE-------TTS------------------S-HHHHHHHHTTT-TSS-EE
T ss_pred cccceehhh------hhHhhh----------------hhHHHHHHHHHHHcCCCCCC
Confidence 589999942 332211 22347899999999999986
No 139
>KOG1271|consensus
Probab=99.00 E-value=2.8e-09 Score=90.79 Aligned_cols=120 Identities=24% Similarity=0.334 Sum_probs=89.2
Q ss_pred CeEEeecCCCchHHHHHHHhC-CCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhccccccccc
Q psy15212 134 MYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 134 ~~VLDlcag~G~kt~~la~~~-~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
++|||+|||.|.....|++.. .+.++++|.|+..++.++...++.|.+ +++.+.|.....
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~----------------- 131 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPD----------------- 131 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCc-----------------
Confidence 399999999999999998742 268999999999999999999999997 899999988765
Q ss_pred ccCCCCCCEEEEccCCccccccc---cCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHH
Q psy15212 211 FYKNKYFDRILADLPCTGSGVVR---RNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQA 287 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~PCsg~G~~~---~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv 287 (329)
+..++||+|+ --|++. -+|+-.-.+ . .-.+...-++|+|||++|+..|-+...|-.+.+
T Consensus 132 -~~~~qfdlvl------DKGT~DAisLs~d~~~~r----~-------~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f 193 (227)
T KOG1271|consen 132 -FLSGQFDLVL------DKGTLDAISLSPDGPVGR----L-------VVYLDSVEKLLSPGGIFVITSCNFTKDELVEEF 193 (227)
T ss_pred -ccccceeEEe------ecCceeeeecCCCCcccc----e-------eeehhhHhhccCCCcEEEEEecCccHHHHHHHH
Confidence 3457888887 233332 233321110 0 123566677899999999999998887554443
Q ss_pred H
Q psy15212 288 I 288 (329)
Q Consensus 288 ~ 288 (329)
+
T Consensus 194 ~ 194 (227)
T KOG1271|consen 194 E 194 (227)
T ss_pred h
Confidence 3
No 140
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.00 E-value=5.8e-09 Score=93.98 Aligned_cols=115 Identities=17% Similarity=0.177 Sum_probs=86.8
Q ss_pred HHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhc
Q psy15212 123 LAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDIN 202 (329)
Q Consensus 123 l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~ 202 (329)
+....+.+.++.+|||+|||+|..+..+++. +.+++++|+++..++.+++++...+..+.++..|+....
T Consensus 39 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--------- 108 (233)
T PRK05134 39 YIREHAGGLFGKRVLDVGCGGGILSESMARL-GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELA--------- 108 (233)
T ss_pred HHHHhccCCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhh---------
Confidence 4444445667889999999999999999875 468999999999999999999888777777777776543
Q ss_pred ccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 203 KKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 203 ~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
. ...+.||+|++.-... ..++ ...+|+.+.++|+|||+++.+++.
T Consensus 109 -------~-~~~~~fD~Ii~~~~l~------~~~~----------------~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 109 -------A-EHPGQFDVVTCMEMLE------HVPD----------------PASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred -------h-hcCCCccEEEEhhHhh------ccCC----------------HHHHHHHHHHHcCCCcEEEEEecC
Confidence 1 1246899999632211 1111 235789999999999999988764
No 141
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.00 E-value=1.2e-08 Score=94.35 Aligned_cols=111 Identities=22% Similarity=0.168 Sum_probs=82.2
Q ss_pred CCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCC-----ceEEEecCccccchhhhhhhhccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNL-----KATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~-----~v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
+.+||++|+|.|+.+..+++..+ .+++++|+++..++.+++++...+. .++++.+|+...-
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l------------- 139 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFL------------- 139 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHH-------------
Confidence 45999999999999988887654 6899999999999999998866431 2678888887643
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCC
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSL 278 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~ 278 (329)
.. ..++||+|++|++.. .+. . . .+ ...++++.+.+.|+|||.++..+++-
T Consensus 140 ---~~-~~~~yDvIi~D~~~~-~~~-----~-------~---~l--~~~ef~~~~~~~L~pgG~lv~~~~~~ 189 (270)
T TIGR00417 140 ---AD-TENTFDVIIVDSTDP-VGP-----A-------E---TL--FTKEFYELLKKALNEDGIFVAQSESP 189 (270)
T ss_pred ---Hh-CCCCccEEEEeCCCC-CCc-----c-------c---ch--hHHHHHHHHHHHhCCCcEEEEcCCCc
Confidence 11 246899999998732 111 0 0 01 12467888899999999999887653
No 142
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.99 E-value=8.8e-09 Score=95.89 Aligned_cols=88 Identities=23% Similarity=0.304 Sum_probs=72.6
Q ss_pred hhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhc
Q psy15212 125 APLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDIN 202 (329)
Q Consensus 125 ~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~ 202 (329)
..+|.+++|..++|++||.||.|..+++..+ ++|+|+|.++.+++.+++++.. .-.++++++|+.++.
T Consensus 12 l~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-~~ri~~i~~~f~~l~--------- 81 (296)
T PRK00050 12 VDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-FGRFTLVHGNFSNLK--------- 81 (296)
T ss_pred HHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-CCcEEEEeCCHHHHH---------
Confidence 4456688999999999999999999999875 7999999999999999999876 334899999998864
Q ss_pred ccccccccccCC--CCCCEEEEccCCccc
Q psy15212 203 KKTNNRFRFYKN--KYFDRILADLPCTGS 229 (329)
Q Consensus 203 ~~~~~~~~~~~~--~~fD~Vl~D~PCsg~ 229 (329)
..... ..+|.|++|.=+|+.
T Consensus 82 -------~~l~~~~~~vDgIl~DLGvSs~ 103 (296)
T PRK00050 82 -------EVLAEGLGKVDGILLDLGVSSP 103 (296)
T ss_pred -------HHHHcCCCccCEEEECCCcccc
Confidence 11111 279999999888766
No 143
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.99 E-value=1.4e-08 Score=90.21 Aligned_cols=112 Identities=26% Similarity=0.423 Sum_probs=84.0
Q ss_pred hhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhc
Q psy15212 125 APLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDIN 202 (329)
Q Consensus 125 ~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~ 202 (329)
...+...++.+|||+|||+|..+..+++..+ ++++++|+++..++.++++.. ....++++.+|+.+..
T Consensus 32 ~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~~~~i~~~~~d~~~~~--------- 101 (223)
T TIGR01934 32 VKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-LPLNIEFIQADAEALP--------- 101 (223)
T ss_pred HHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-cCCCceEEecchhcCC---------
Confidence 3344455789999999999999999998776 599999999999999999876 2223788888887754
Q ss_pred ccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 203 KKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 203 ~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
+..+.||+|++.- .+...+ + -..+|+.+.++|+|||+++..+.+
T Consensus 102 ---------~~~~~~D~i~~~~------~~~~~~---------~-------~~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 102 ---------FEDNSFDAVTIAF------GLRNVT---------D-------IQKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred ---------CCCCcEEEEEEee------eeCCcc---------c-------HHHHHHHHHHHcCCCcEEEEEEec
Confidence 2346899998521 111100 1 235789999999999999987654
No 144
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.99 E-value=1.1e-09 Score=95.02 Aligned_cols=152 Identities=22% Similarity=0.289 Sum_probs=84.6
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
+.++.+|||+||||||++..++++.+ ++|+|+|+.+. ...+ +..+.+|..+..... .+ .
T Consensus 21 ~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~~~~i~~d~~~~~~~~-~i--~---- 82 (181)
T PF01728_consen 21 PGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQNVSFIQGDITNPENIK-DI--R---- 82 (181)
T ss_dssp TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TTEEBTTGGGEEEEHSH-HG--G----
T ss_pred cccccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccceeeeecccchhhHHH-hh--h----
Confidence 33458999999999999999999883 79999999877 1122 555567765532100 00 0
Q ss_pred ccccccC--CCCCCEEEEcc--CCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccc
Q psy15212 207 NRFRFYK--NKYFDRILADL--PCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEE 282 (329)
Q Consensus 207 ~~~~~~~--~~~fD~Vl~D~--PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~E 282 (329)
.... .+.||+|++|. +|+|... .+.....++....|.-|.+.|++||.+|.-+-. ..+
T Consensus 83 ---~~~~~~~~~~dlv~~D~~~~~~g~~~-------------~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~--~~~ 144 (181)
T PF01728_consen 83 ---KLLPESGEKFDLVLSDMAPNVSGDRN-------------IDEFISIRLILSQLLLALELLKPGGTFVIKVFK--GPE 144 (181)
T ss_dssp ---GSHGTTTCSESEEEE-------SSHH-------------SSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS--STT
T ss_pred ---hhccccccCcceeccccccCCCCchh-------------hHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc--Ccc
Confidence 1111 26899999998 4443211 112222344555666888899999998865443 223
Q ss_pred cHHHHHHHHhhCCCcEEecCCCcccCCCCCCCCCCeEEEEE
Q psy15212 283 SEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSL 323 (329)
Q Consensus 283 ne~vv~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~gff~a~ 323 (329)
.++++..+-..+..+..+. |...+....+-|++|+
T Consensus 145 ~~~~~~~l~~~F~~v~~~K------p~~sr~~s~E~Ylv~~ 179 (181)
T PF01728_consen 145 IEELIYLLKRCFSKVKIVK------PPSSRSESSEEYLVCR 179 (181)
T ss_dssp SHHHHHHHHHHHHHEEEEE-------TTSBTTCBEEEEESE
T ss_pred HHHHHHHHHhCCeEEEEEE------CcCCCCCccEEEEEEc
Confidence 3455555444332333333 2222224556666653
No 145
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.99 E-value=3.6e-09 Score=100.45 Aligned_cols=102 Identities=19% Similarity=0.302 Sum_probs=78.4
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
.++.+|||+|||+|..+..+++..+ .+++++|+++.+++.++++.... .++++.+|+...+
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~--~i~~i~gD~e~lp---------------- 173 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK--ECKIIEGDAEDLP---------------- 173 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhcc--CCeEEeccHHhCC----------------
Confidence 4678999999999999999988765 69999999999999999886532 2677889987654
Q ss_pred cccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 210 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 210 ~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
+.++.||+|++.. ++..-++ ...+|+++.++|||||++++.
T Consensus 174 --~~~~sFDvVIs~~------~L~~~~d----------------~~~~L~e~~rvLkPGG~LvIi 214 (340)
T PLN02490 174 --FPTDYADRYVSAG------SIEYWPD----------------PQRGIKEAYRVLKIGGKACLI 214 (340)
T ss_pred --CCCCceeEEEEcC------hhhhCCC----------------HHHHHHHHHHhcCCCcEEEEE
Confidence 2456899999632 1211111 234799999999999998875
No 146
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.99 E-value=3e-09 Score=95.44 Aligned_cols=101 Identities=29% Similarity=0.395 Sum_probs=78.0
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
.+.+|||+|||+|..+..+++..+ .+++++|+++.+++.+++++.. .+.++.+|+...+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~---~~~~~~~d~~~~~----------------- 93 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSE---NVQFICGDAEKLP----------------- 93 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCC---CCeEEecchhhCC-----------------
Confidence 356899999999999999998876 6899999999999988877642 4678888887654
Q ss_pred ccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 211 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
+.++.||+|+++-... |. .-..++|+.+.++|+|||.+++++
T Consensus 94 -~~~~~fD~vi~~~~l~------------~~----------~~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 94 -LEDSSFDLIVSNLALQ------------WC----------DDLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred -CCCCceeEEEEhhhhh------------hc----------cCHHHHHHHHHHHcCCCcEEEEEe
Confidence 2456899999754321 11 012357899999999999999875
No 147
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.98 E-value=9.9e-09 Score=93.38 Aligned_cols=125 Identities=12% Similarity=0.061 Sum_probs=93.4
Q ss_pred chhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccc
Q psy15212 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKIN 193 (329)
Q Consensus 118 d~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~ 193 (329)
....++...++....-.+||++|++.|.-|+.+|..++ ++|+++|.++++.+.+++++++.|+. ++++.+|+.+.-
T Consensus 65 ~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L 144 (247)
T PLN02589 65 ADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVL 144 (247)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHH
Confidence 44455555555555556999999999999999998775 89999999999999999999999985 899999987742
Q ss_pred hhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEE
Q psy15212 194 LKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 273 (329)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvy 273 (329)
+.+.- .....++||.|++|+-= ......++.+.++|+|||.++.
T Consensus 145 -~~l~~----------~~~~~~~fD~iFiDadK-------------------------~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 145 -DQMIE----------DGKYHGTFDFIFVDADK-------------------------DNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred -HHHHh----------ccccCCcccEEEecCCH-------------------------HHhHHHHHHHHHhcCCCeEEEE
Confidence 11100 00012589999999740 1134567778899999999887
Q ss_pred EcCCC
Q psy15212 274 VTCSL 278 (329)
Q Consensus 274 sTCS~ 278 (329)
-..-+
T Consensus 189 DNvl~ 193 (247)
T PLN02589 189 DNTLW 193 (247)
T ss_pred cCCCC
Confidence 65543
No 148
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.97 E-value=8.1e-09 Score=96.96 Aligned_cols=110 Identities=19% Similarity=0.240 Sum_probs=78.4
Q ss_pred CCCCeEEeecCCCchHHHHHHHhC--CCEEEEEeCChhHHHHHHHHHHHc--CCceEEEecCccccchhhhhhhhccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIA--DIKLISVDNNLSRLNMISENLKRL--NLKATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~--~~~v~avD~~~~rl~~l~~n~~~~--g~~v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
.++.+|||+|||+|.+|..+++.+ +.+++++|+|+.+++.+++++... ++++..+++|+....
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~------------- 128 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPL------------- 128 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchh-------------
Confidence 457799999999999999999886 369999999999999999998764 355778899987632
Q ss_pred ccccccCCCCC---CE--EEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCC
Q psy15212 207 NRFRFYKNKYF---DR--ILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSL 278 (329)
Q Consensus 207 ~~~~~~~~~~f---D~--Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~ 278 (329)
.+ . ..+ +. ++++-+ .|.+ .+++ ..++|+.+.+.|+|||.+++..-+.
T Consensus 129 ---~~-~-~~~~~~~~~~~~~gs~---~~~~----------~~~e-------~~~~L~~i~~~L~pgG~~lig~d~~ 180 (301)
T TIGR03438 129 ---AL-P-PEPAAGRRLGFFPGST---IGNF----------TPEE-------AVAFLRRIRQLLGPGGGLLIGVDLV 180 (301)
T ss_pred ---hh-h-cccccCCeEEEEeccc---ccCC----------CHHH-------HHHHHHHHHHhcCCCCEEEEeccCC
Confidence 11 1 112 33 322221 1111 1222 4578999999999999999875443
No 149
>KOG2915|consensus
Probab=98.92 E-value=1.3e-08 Score=91.77 Aligned_cols=122 Identities=22% Similarity=0.339 Sum_probs=95.9
Q ss_pred HHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhh
Q psy15212 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKK 196 (329)
Q Consensus 121 s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~ 196 (329)
..++..+|++.||++|++.|.|+|+.+..++...+ |+++.+|....|.+.+.+.++..|+. +++++-|......
T Consensus 94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF-- 171 (314)
T KOG2915|consen 94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGF-- 171 (314)
T ss_pred HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCc--
Confidence 34556788999999999999999999999998876 89999999999999999999999986 7888888776430
Q ss_pred hhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCC-EEEEEc
Q psy15212 197 LYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG-KLLFVT 275 (329)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG-~lvysT 275 (329)
...+..+|.|++|.|-- | ..+-+|++.||.+| ++
T Consensus 172 --------------~~ks~~aDaVFLDlPaP------------w---------------~AiPha~~~lk~~g~r~---- 206 (314)
T KOG2915|consen 172 --------------LIKSLKADAVFLDLPAP------------W---------------EAIPHAAKILKDEGGRL---- 206 (314)
T ss_pred --------------cccccccceEEEcCCCh------------h---------------hhhhhhHHHhhhcCceE----
Confidence 11357899999999932 2 24677788888766 44
Q ss_pred CCCCccccHHHHHHHH
Q psy15212 276 CSLWFEESEEQAIIFS 291 (329)
Q Consensus 276 CS~~~~Ene~vv~~~l 291 (329)
||+.|- .++|+.-+
T Consensus 207 csFSPC--IEQvqrtc 220 (314)
T KOG2915|consen 207 CSFSPC--IEQVQRTC 220 (314)
T ss_pred EeccHH--HHHHHHHH
Confidence 667663 34555444
No 150
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.92 E-value=1e-08 Score=102.13 Aligned_cols=120 Identities=18% Similarity=0.142 Sum_probs=83.8
Q ss_pred HHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhh
Q psy15212 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDI 201 (329)
Q Consensus 122 ~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~ 201 (329)
..+...+.+.++.+|||+|||+|..+..+++.. .+|+|+|+++.+++.+++.. ...-.++++.+|+.....
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~-~~~~~i~~~~~d~~~~~~------- 97 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESIN-GHYKNVKFMCADVTSPDL------- 97 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHh-ccCCceEEEEeccccccc-------
Confidence 344455666678899999999999999999875 49999999999998765422 111137888899864320
Q ss_pred cccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCC
Q psy15212 202 NKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLW 279 (329)
Q Consensus 202 ~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~ 279 (329)
+ +..++||.|++..++.- .... ...++|+++.+.|||||++++...++.
T Consensus 98 --------~-~~~~~fD~I~~~~~l~~-------------l~~~-------~~~~~l~~~~r~Lk~gG~l~~~d~~~~ 146 (475)
T PLN02336 98 --------N-ISDGSVDLIFSNWLLMY-------------LSDK-------EVENLAERMVKWLKVGGYIFFRESCFH 146 (475)
T ss_pred --------C-CCCCCEEEEehhhhHHh-------------CCHH-------HHHHHHHHHHHhcCCCeEEEEEeccCC
Confidence 1 24578999997654220 0111 125689999999999999988654333
No 151
>KOG4589|consensus
Probab=98.92 E-value=1.9e-08 Score=86.07 Aligned_cols=157 Identities=22% Similarity=0.287 Sum_probs=106.1
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEec-Cccccchhhhhhhhcccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK-ATLILS-DISKINLKKLYIDINKKT 205 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~-D~~~~~~~~~~~~~~~~~ 205 (329)
..|+++|||+||+||+.+-.+-++.+ |.|.++|+-. -.... +.++.+ |.++.. .+..
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh-----------~~p~~Ga~~i~~~dvtdp~---~~~k----- 127 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH-----------IEPPEGATIIQGNDVTDPE---TYRK----- 127 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee-----------ccCCCCcccccccccCCHH---HHHH-----
Confidence 46799999999999999998888875 8999999821 11122 445554 776643 1111
Q ss_pred cccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHH
Q psy15212 206 NNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEE 285 (329)
Q Consensus 206 ~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~ 285 (329)
.|+.+++...|+||.|.---.+|+ +..+...+..+=...|.-|..+++|+|.++ |-+...+.+.
T Consensus 128 --i~e~lp~r~VdvVlSDMapnaTGv-----------r~~Dh~~~i~LC~s~l~~al~~~~p~g~fv---cK~w~g~e~~ 191 (232)
T KOG4589|consen 128 --IFEALPNRPVDVVLSDMAPNATGV-----------RIRDHYRSIELCDSALLFALTLLIPNGSFV---CKLWDGSEEA 191 (232)
T ss_pred --HHHhCCCCcccEEEeccCCCCcCc-----------chhhHHHHHHHHHHHHHHhhhhcCCCcEEE---EEEecCCchH
Confidence 112245678999999987666766 233445555666677888899999999998 8777666666
Q ss_pred HHHHHHhhC-CCcEEecCCCcccCCCCCCCCCCeEEEEEEEec
Q psy15212 286 QAIIFSKNH-KDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 327 (329)
Q Consensus 286 vv~~~l~~~-~~~~~~~~~~~~~p~~~~~~~~~gff~a~l~k~ 327 (329)
-.+.-+..+ ..++.+. |...+....+-||+|+=.|.
T Consensus 192 ~l~r~l~~~f~~Vk~vK------P~Asr~eS~E~y~v~~~~k~ 228 (232)
T KOG4589|consen 192 LLQRRLQAVFTNVKKVK------PDASRDESAETYLVCLNFKG 228 (232)
T ss_pred HHHHHHHHHhhhcEeeC------CccccccccceeeeeeeccC
Confidence 666655543 3344443 54444467788998876654
No 152
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.91 E-value=1.5e-08 Score=90.47 Aligned_cols=106 Identities=20% Similarity=0.250 Sum_probs=81.9
Q ss_pred CCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCC-ceEEEecCccccchhhhhhhhccccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL-KATLILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~-~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
.+.+|||+|||+|..+..+++. +..++++|+++.+++.+++++...+. .+++...|+.+.. .
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~----------------~ 107 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL-GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLA----------------E 107 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhh----------------c
Confidence 4789999999999999988875 45899999999999999999998887 4888888877653 1
Q ss_pred ccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 211 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
...+.||.|++... + ........+|+.+.+.|++||.++.+++.
T Consensus 108 -~~~~~~D~i~~~~~------l----------------~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 108 -KGAKSFDVVTCMEV------L----------------EHVPDPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred -CCCCCccEEEehhH------H----------------HhCCCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 11368999996321 1 11112346889999999999999988763
No 153
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.89 E-value=3.3e-08 Score=88.35 Aligned_cols=103 Identities=18% Similarity=0.165 Sum_probs=75.9
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCC--ceEEEecCccccchhhhhhhhcccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL--KATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~--~v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
+.++.+|||+|||+|..+..++.. +.+|+|+|+++.+++.+++++...+. .+.+.++|+....
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~-~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-------------- 117 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC-------------- 117 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC--------------
Confidence 456889999999999999999875 45999999999999999999988776 3788888876532
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
+.||.|++- .++.. ... ..+..++.++.+.+++++.+.++
T Consensus 118 -------~~fD~ii~~------~~l~~-------~~~-------~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 118 -------GEFDIVVCM------DVLIH-------YPA-------SDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred -------CCcCEEEEh------hHHHh-------CCH-------HHHHHHHHHHHHHhCCCEEEEEC
Confidence 579999851 11100 001 12345677787888876666554
No 154
>PRK01581 speE spermidine synthase; Validated
Probab=98.89 E-value=1.7e-08 Score=95.89 Aligned_cols=110 Identities=17% Similarity=0.250 Sum_probs=78.6
Q ss_pred CCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHH--H---HHcCC---ceEEEecCccccchhhhhhhhcc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISEN--L---KRLNL---KATLILSDISKINLKKLYIDINK 203 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n--~---~~~g~---~v~~~~~D~~~~~~~~~~~~~~~ 203 (329)
..+||++|+|.|+.+..+++..+ .+|+++|+++.+++.+++. + .+.+. +++++.+|+..+.
T Consensus 151 PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL---------- 220 (374)
T PRK01581 151 PKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFL---------- 220 (374)
T ss_pred CCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHH----------
Confidence 35999999999998877777544 6999999999999999962 1 22222 3889999998753
Q ss_pred cccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 204 KTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 204 ~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
. ...++||+|++|.|-.... ....+ ...++++.+.+.|+|||.++.-..
T Consensus 221 ------~-~~~~~YDVIIvDl~DP~~~---------------~~~~L--yT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 221 ------S-SPSSLYDVIIIDFPDPATE---------------LLSTL--YTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred ------H-hcCCCccEEEEcCCCcccc---------------chhhh--hHHHHHHHHHHhcCCCcEEEEecC
Confidence 1 1246899999998632100 00111 125688999999999999887644
No 155
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.89 E-value=1.1e-08 Score=90.12 Aligned_cols=137 Identities=22% Similarity=0.354 Sum_probs=96.0
Q ss_pred CCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhccccccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
...+||+|||.|...+++|...+ ..++|+|++..++..+...+.+.+++ +.++.+|+...- . .
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l-~--------------~ 82 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELL-R--------------R 82 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHH-H--------------H
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHH-h--------------h
Confidence 34899999999999999999888 79999999999999999999999997 899999998842 1 1
Q ss_pred ccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHHHH
Q psy15212 211 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIF 290 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~~ 290 (329)
.+.++.+|.|.+.=|+- |.+....-.++ ++.++|+...+.|+|||.|.+.|-. .+--+...+.+
T Consensus 83 ~~~~~~v~~i~i~FPDP------------WpK~rH~krRl--~~~~fl~~~~~~L~~gG~l~~~TD~--~~y~~~~~~~~ 146 (195)
T PF02390_consen 83 LFPPGSVDRIYINFPDP------------WPKKRHHKRRL--VNPEFLELLARVLKPGGELYFATDV--EEYAEWMLEQF 146 (195)
T ss_dssp HSTTTSEEEEEEES-----------------SGGGGGGST--TSHHHHHHHHHHEEEEEEEEEEES---HHHHHHHHHHH
T ss_pred cccCCchheEEEeCCCC------------Ccccchhhhhc--CCchHHHHHHHHcCCCCEEEEEeCC--HHHHHHHHHHH
Confidence 23457899999988754 22221111121 3567899999999999999887653 22233333333
Q ss_pred HhhCCCcEEe
Q psy15212 291 SKNHKDSIRL 300 (329)
Q Consensus 291 l~~~~~~~~~ 300 (329)
.+.++.++..
T Consensus 147 ~~~~~~f~~~ 156 (195)
T PF02390_consen 147 EESHPGFENI 156 (195)
T ss_dssp HHHSTTEEEE
T ss_pred HhcCcCeEEc
Confidence 3336777766
No 156
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.88 E-value=2.2e-08 Score=94.28 Aligned_cols=84 Identities=21% Similarity=0.167 Sum_probs=64.6
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHc-CCc--eEEEe-cCccccchhhhhhhhccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRL-NLK--ATLIL-SDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~-g~~--v~~~~-~D~~~~~~~~~~~~~~~~~~ 206 (329)
++.+|||+|||+|.....++.... .+++|+|+++..++.+++|++.+ ++. ++++. .|...+. .
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~-~----------- 181 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIF-K----------- 181 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhh-h-----------
Confidence 467999999999999998887654 69999999999999999999999 785 66653 3433321 0
Q ss_pred ccccc-cCCCCCCEEEEccCCcccc
Q psy15212 207 NRFRF-YKNKYFDRILADLPCTGSG 230 (329)
Q Consensus 207 ~~~~~-~~~~~fD~Vl~D~PCsg~G 230 (329)
.. ...+.||.|+|+||+-.++
T Consensus 182 ---~i~~~~~~fDlivcNPPf~~s~ 203 (321)
T PRK11727 182 ---GIIHKNERFDATLCNPPFHASA 203 (321)
T ss_pred ---cccccCCceEEEEeCCCCcCcc
Confidence 00 1246899999999987554
No 157
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.88 E-value=2.1e-08 Score=92.71 Aligned_cols=94 Identities=19% Similarity=0.316 Sum_probs=71.3
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCC----CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIAD----IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~----~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
.++.+|||+|||+|..+..+++..+ ..++|+|+|+.+++.++++. -.+.+..+|+..++
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~----~~~~~~~~d~~~lp------------- 146 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY----PQVTFCVASSHRLP------------- 146 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC----CCCeEEEeecccCC-------------
Confidence 4567899999999999999987654 37999999999999987653 23678888888765
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
+.++.||.|++-- .| ..+++..+.|||||+++.++
T Consensus 147 -----~~~~sfD~I~~~~----------~~-------------------~~~~e~~rvLkpgG~li~~~ 181 (272)
T PRK11088 147 -----FADQSLDAIIRIY----------AP-------------------CKAEELARVVKPGGIVITVT 181 (272)
T ss_pred -----CcCCceeEEEEec----------CC-------------------CCHHHHHhhccCCCEEEEEe
Confidence 3467899998410 01 12456677899999999865
No 158
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.87 E-value=1.1e-08 Score=91.88 Aligned_cols=120 Identities=20% Similarity=0.323 Sum_probs=96.9
Q ss_pred CeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCC-ceEEEecCccccchhhhhhhhcccccccccc
Q psy15212 134 MYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNL-KATLILSDISKINLKKLYIDINKKTNNRFRF 211 (329)
Q Consensus 134 ~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~-~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 211 (329)
..+||+|||.|...+++|+..+ ..++|+|+....+..+.+.+.+.++ ++.++..|+..+- .+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l----------------~~ 113 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVL----------------DY 113 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHH----------------Hh
Confidence 5899999999999999999888 7899999999999999999999999 7999999998864 33
Q ss_pred cC-CCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHHH
Q psy15212 212 YK-NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAII 289 (329)
Q Consensus 212 ~~-~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~ 289 (329)
+. +++.|.|.+.=|+- |.+....-.++ +|..+|+...+.|+|||.|.+.|- +++..++
T Consensus 114 ~~~~~sl~~I~i~FPDP------------WpKkRH~KRRl--~~~~fl~~~a~~Lk~gG~l~~aTD------~~~y~e~ 172 (227)
T COG0220 114 LIPDGSLDKIYINFPDP------------WPKKRHHKRRL--TQPEFLKLYARKLKPGGVLHFATD------NEEYFEW 172 (227)
T ss_pred cCCCCCeeEEEEECCCC------------CCCcccccccc--CCHHHHHHHHHHccCCCEEEEEec------CHHHHHH
Confidence 33 44999999988854 43333222333 477899999999999999998764 4555555
No 159
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.87 E-value=1.9e-08 Score=89.74 Aligned_cols=110 Identities=13% Similarity=0.120 Sum_probs=75.4
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHH------------H-cCCceEEEecCccccchhhh
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLK------------R-LNLKATLILSDISKINLKKL 197 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~------------~-~g~~v~~~~~D~~~~~~~~~ 197 (329)
.++.+|||+|||.|.-+..+|++ |-.|+|+|+|+..++.+..... + .+..++++++|+..+.
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~-G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~---- 107 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ-GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALT---- 107 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCC----
Confidence 46779999999999999999975 5699999999999997633211 0 1224788899988765
Q ss_pred hhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 198 YIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
. ...+.||.|+- - +.+..- . .....+.++...++|||||++++.|-+
T Consensus 108 ------------~-~~~~~fD~i~D-~-----~~~~~l-------~-------~~~R~~~~~~l~~lLkpgG~~ll~~~~ 154 (213)
T TIGR03840 108 ------------A-ADLGPVDAVYD-R-----AALIAL-------P-------EEMRQRYAAHLLALLPPGARQLLITLD 154 (213)
T ss_pred ------------c-ccCCCcCEEEe-c-----hhhccC-------C-------HHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 1 01256898862 1 111100 0 112345788899999999987777655
Q ss_pred C
Q psy15212 278 L 278 (329)
Q Consensus 278 ~ 278 (329)
.
T Consensus 155 ~ 155 (213)
T TIGR03840 155 Y 155 (213)
T ss_pred c
Confidence 4
No 160
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.86 E-value=5.9e-09 Score=91.18 Aligned_cols=131 Identities=21% Similarity=0.206 Sum_probs=92.7
Q ss_pred EechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccch
Q psy15212 116 IQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINL 194 (329)
Q Consensus 116 ~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~ 194 (329)
.+.++.-|.++. .+.+-.+|.|+|||||..|..++++.+ +.|+|+|.|+.|++.+++.+ .++++..+|++...
T Consensus 15 RtRPa~dLla~V-p~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl----p~~~f~~aDl~~w~- 88 (257)
T COG4106 15 RTRPARDLLARV-PLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL----PDATFEEADLRTWK- 88 (257)
T ss_pred ccCcHHHHHhhC-CccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC----CCCceecccHhhcC-
Confidence 345555555543 245567999999999999999999988 89999999999999886554 34788889988765
Q ss_pred hhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 195 KKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
+...+|+++.++- ..|. + -.-++|.+.+..|.|||.|..-
T Consensus 89 ------------------p~~~~dllfaNAv------------lqWl--p--------dH~~ll~rL~~~L~Pgg~LAVQ 128 (257)
T COG4106 89 ------------------PEQPTDLLFANAV------------LQWL--P--------DHPELLPRLVSQLAPGGVLAVQ 128 (257)
T ss_pred ------------------CCCccchhhhhhh------------hhhc--c--------ccHHHHHHHHHhhCCCceEEEE
Confidence 4578999987653 1232 1 1245788888889999999865
Q ss_pred cCCCCccccHHHHHHHHh
Q psy15212 275 TCSLWFEESEEQAIIFSK 292 (329)
Q Consensus 275 TCS~~~~Ene~vv~~~l~ 292 (329)
----+.+..-..+....+
T Consensus 129 mPdN~depsH~~mr~~A~ 146 (257)
T COG4106 129 MPDNLDEPSHRLMRETAD 146 (257)
T ss_pred CCCccCchhHHHHHHHHh
Confidence 433333333334444443
No 161
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.85 E-value=1.8e-08 Score=95.01 Aligned_cols=59 Identities=15% Similarity=0.108 Sum_probs=49.0
Q ss_pred CCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcC------CceEEEecCccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLN------LKATLILSDISK 191 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g------~~v~~~~~D~~~ 191 (329)
+|.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.++++.+..+ ..+.+...|+..
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~-g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~ 208 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE-GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES 208 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh
Confidence 5789999999999999999975 4699999999999999999988752 225677777543
No 162
>PLN02366 spermidine synthase
Probab=98.84 E-value=1.1e-07 Score=89.36 Aligned_cols=109 Identities=16% Similarity=0.229 Sum_probs=81.4
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcC--C---ceEEEecCccccchhhhhhhhcccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLN--L---KATLILSDISKINLKKLYIDINKKT 205 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g--~---~v~~~~~D~~~~~~~~~~~~~~~~~ 205 (329)
...+||++|+|.|+.+..+++.-+ .+|+.+|+++..++.+++.+...+ + +++++.+|+..+-
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l------------ 158 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFL------------ 158 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHH------------
Confidence 457999999999999999987644 699999999999999999886542 2 3899999987653
Q ss_pred cccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 206 NNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 206 ~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
....+++||+|++|.+-.. | | ...+ ...++++.+.+.|+|||.++.-
T Consensus 159 ----~~~~~~~yDvIi~D~~dp~-~-----~----------~~~L--~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 159 ----KNAPEGTYDAIIVDSSDPV-G-----P----------AQEL--FEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred ----hhccCCCCCEEEEcCCCCC-C-----c----------hhhh--hHHHHHHHHHHhcCCCcEEEEC
Confidence 1112468999999976321 1 1 0011 2356889999999999998753
No 163
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.83 E-value=5.8e-08 Score=92.42 Aligned_cols=141 Identities=15% Similarity=0.160 Sum_probs=104.8
Q ss_pred CCCcccccceEEEechhH---HHHhh---hcCCCCCCeEEeecCCCchHHHHHHHhCC--C-------------------
Q psy15212 104 SKIPKFFNGFCSIQDAAA---QLAAP---LLDIRSGMYVLDACSAPGGKTCHLLEIAD--I------------------- 156 (329)
Q Consensus 104 ~~~~~~~~G~~~~Qd~~s---~l~~~---~l~~~~g~~VLDlcag~G~kt~~la~~~~--~------------------- 156 (329)
+..++++.||=.-+.++. .|++. +.+.+++..++|.-||+|.+.+.+|.+.. +
T Consensus 157 tG~sLhkRGyR~~~g~ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~l 236 (381)
T COG0116 157 TGDSLHKRGYRVYDGPAPLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDL 236 (381)
T ss_pred CCcchhhccccccCCCCCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHH
Confidence 334677788777766662 33333 33567788999999999999999887652 1
Q ss_pred -------------------EEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhcccccccccccCCC
Q psy15212 157 -------------------KLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNNRFRFYKNK 215 (329)
Q Consensus 157 -------------------~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (329)
.++|+|+++.+++.++.|+++.|+. |++..+|++.+. ..+ +
T Consensus 237 w~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~----------------~~~--~ 298 (381)
T COG0116 237 WDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLK----------------EPL--E 298 (381)
T ss_pred HHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCC----------------CCC--C
Confidence 3789999999999999999999997 899999999876 111 6
Q ss_pred CCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 216 YFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 216 ~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
.+|+||+|||+. . .-.+-.....++.++.+.+.+.++--++.|++|-
T Consensus 299 ~~gvvI~NPPYG-e-------------Rlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 299 EYGVVISNPPYG-E-------------RLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred cCCEEEeCCCcc-h-------------hcCChhhHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 899999999976 1 1111133444677888888888887778887653
No 164
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.82 E-value=7.7e-08 Score=85.31 Aligned_cols=129 Identities=13% Similarity=0.135 Sum_probs=86.2
Q ss_pred CCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccc
Q psy15212 129 DIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 129 ~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
...++.+|||+|||+|..+..+++..+ .+++|+|+|+.+++.++++.. .+.+..+|+.. +
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~----~~~~~~~d~~~-~-------------- 100 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP----NINIIQGSLFD-P-------------- 100 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC----CCcEEEeeccC-C--------------
Confidence 345678999999999999999998754 799999999999999988653 25677788766 3
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC--------CC
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS--------LW 279 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS--------~~ 279 (329)
+.+++||+|++. +++.+- ++ ....++++++.+.+ ++.++.+..- ..
T Consensus 101 ----~~~~sfD~V~~~------~vL~hl-------~p-------~~~~~~l~el~r~~--~~~v~i~e~~~~~~~~~~y~ 154 (204)
T TIGR03587 101 ----FKDNFFDLVLTK------GVLIHI-------NP-------DNLPTAYRELYRCS--NRYILIAEYYNPSPVEISYR 154 (204)
T ss_pred ----CCCCCEEEEEEC------ChhhhC-------CH-------HHHHHHHHHHHhhc--CcEEEEEEeeCCCceeeeee
Confidence 245789999952 232211 11 12345677777765 4566654321 11
Q ss_pred cccc----HHHHHHHHhhCCCcEEecC
Q psy15212 280 FEES----EEQAIIFSKNHKDSIRLNS 302 (329)
Q Consensus 280 ~~En----e~vv~~~l~~~~~~~~~~~ 302 (329)
..+. -+..+++++..|+.+++.-
T Consensus 155 ~~~~~~~~~d~~~~~~~~~~~l~~~~~ 181 (204)
T TIGR03587 155 GNSGRLWKRDFAGEMMDRYPDLKLVDY 181 (204)
T ss_pred CCcchhhhhhHHHHHHHhCCcceeeec
Confidence 1110 1235778888888888763
No 165
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.82 E-value=2.5e-08 Score=91.92 Aligned_cols=107 Identities=21% Similarity=0.267 Sum_probs=74.0
Q ss_pred CCCCeEEeecCCCch----HHHHHHHhCC------CEEEEEeCChhHHHHHHHHHHH----cC-----------------
Q psy15212 131 RSGMYVLDACSAPGG----KTCHLLEIAD------IKLISVDNNLSRLNMISENLKR----LN----------------- 179 (329)
Q Consensus 131 ~~g~~VLDlcag~G~----kt~~la~~~~------~~v~avD~~~~rl~~l~~n~~~----~g----------------- 179 (329)
.++.+|||+|||+|. .+..+++..+ .+|+|+|+|+.+++.+++.+-. .+
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 345799999999996 4555555432 5899999999999999885310 00
Q ss_pred -----C--ceEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH-H
Q psy15212 180 -----L--KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL-S 251 (329)
Q Consensus 180 -----~--~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l-~ 251 (329)
+ .+++..+|+.... ...+.||+|+| . .+ +..+ .
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~------------------~~~~~fD~I~c----r--nv---------------l~yf~~ 218 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAES------------------PPLGDFDLIFC----R--NV---------------LIYFDE 218 (264)
T ss_pred EEChHHhCcCEEeeccCCCCC------------------CccCCCCEEEe----c--hh---------------HHhCCH
Confidence 1 2566777776643 23578999995 2 11 1111 1
Q ss_pred HHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 252 KYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 252 ~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
..+.++++...+.|+|||+|+....
T Consensus 219 ~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 219 PTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEECc
Confidence 3467899999999999999998744
No 166
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.80 E-value=2.3e-08 Score=93.42 Aligned_cols=88 Identities=23% Similarity=0.278 Sum_probs=74.1
Q ss_pred HHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCC-c-eEEEecCccccchhhhh
Q psy15212 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL-K-ATLILSDISKINLKKLY 198 (329)
Q Consensus 121 s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~-~-v~~~~~D~~~~~~~~~~ 198 (329)
...++..+++.+++.|||+|||+|..|..+++.. .+|+|+|+|+.+++.+++++...+. . ++++.+|+....
T Consensus 25 ~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~----- 98 (294)
T PTZ00338 25 LDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE----- 98 (294)
T ss_pred HHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc-----
Confidence 4445556678899999999999999999999864 5899999999999999999988774 3 899999998754
Q ss_pred hhhcccccccccccCCCCCCEEEEccCCccc
Q psy15212 199 IDINKKTNNRFRFYKNKYFDRILADLPCTGS 229 (329)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~ 229 (329)
...||.|+.|+|+..+
T Consensus 99 ---------------~~~~d~VvaNlPY~Is 114 (294)
T PTZ00338 99 ---------------FPYFDVCVANVPYQIS 114 (294)
T ss_pred ---------------ccccCEEEecCCcccC
Confidence 1368999999999744
No 167
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.80 E-value=2.4e-08 Score=83.90 Aligned_cols=106 Identities=25% Similarity=0.349 Sum_probs=73.3
Q ss_pred HHHhhhcC-CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhh
Q psy15212 122 QLAAPLLD-IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYID 200 (329)
Q Consensus 122 ~l~~~~l~-~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~ 200 (329)
.++..+.. ..++.+|||+|||.|..+..+++. +.+++++|+++.+++. ..+.....+.....
T Consensus 11 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~g~D~~~~~~~~---------~~~~~~~~~~~~~~------- 73 (161)
T PF13489_consen 11 DLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR-GFEVTGVDISPQMIEK---------RNVVFDNFDAQDPP------- 73 (161)
T ss_dssp HHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT-TSEEEEEESSHHHHHH---------TTSEEEEEECHTHH-------
T ss_pred HHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHhh---------hhhhhhhhhhhhhh-------
Confidence 34444443 467889999999999999999765 4499999999999987 21222222222221
Q ss_pred hcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 201 INKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 201 ~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
..++.||.|++. .++.+.++ ...+|+...++|||||+++.++-.
T Consensus 74 -----------~~~~~fD~i~~~------~~l~~~~d----------------~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 74 -----------FPDGSFDLIICN------DVLEHLPD----------------PEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp -----------CHSSSEEEEEEE------SSGGGSSH----------------HHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred -----------ccccchhhHhhH------HHHhhccc----------------HHHHHHHHHHhcCCCCEEEEEEcC
Confidence 235799999953 33333221 346899999999999999998743
No 168
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.80 E-value=7.2e-07 Score=82.48 Aligned_cols=199 Identities=17% Similarity=0.170 Sum_probs=115.9
Q ss_pred cCCcHHHHHHHHHhCCChHHHHHHHHHhCCCCCeeEEEcCC-C------CC---HHHHHHHHHHCCCe-eEEeCCceEEE
Q psy15212 29 WNYPIWWINQVKITYPNFFQWKNILDVGHKKPPLTLRINQR-K------TT---LISYNKLLKKSGLE-TTIIGPLAIKL 97 (329)
Q Consensus 29 ~s~P~w~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~RvN~~-k------~~---~~~~~~~l~~~g~~-~~~~~~~~~~~ 97 (329)
-.+|.++.+.+...+|....+.+.++++-.-.+-.+-.+.. . .+ .+.+.+.|...... .-|+.-+++.+
T Consensus 15 ~~l~~~~~~~~~~~~g~~~~w~~~l~~lp~~~~~~~~l~~~v~i~~~~~l~~~~~~~l~~~l~~l~PWRKGPf~l~gi~I 94 (315)
T PF08003_consen 15 ETLPAQLAAWLERRHGDLPRWQEALEQLPDLEPSSVDLSDSVTIGSASDLSAEQRQQLEQLLKALMPWRKGPFSLFGIHI 94 (315)
T ss_pred HHhHHHHHHHHHhccCCHHHHHHHHHHcCCCCCcEEecCCcEEeCCCCCCCHHHHHHHHHHHHhhCCcccCCcccCCEee
Confidence 34677777777667888788888888887755533322221 0 11 22333334432211 01112234444
Q ss_pred cCCCCCCCCcccccceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHH
Q psy15212 98 HTPISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKR 177 (329)
Q Consensus 98 ~~~~~~~~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~ 177 (329)
++ +|.. |--=..+...+..-.|.+|||+|||.|..+..|+......|+|+|.+..-+...+---+-
T Consensus 95 Dt--------EWrS------d~KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~ 160 (315)
T PF08003_consen 95 DT--------EWRS------DWKWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHF 160 (315)
T ss_pred cc--------cccc------cchHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHH
Confidence 32 1111 111122233333446899999999999999999987657999999998876664444444
Q ss_pred cCCceEEEec--CccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHH
Q psy15212 178 LNLKATLILS--DISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSC 255 (329)
Q Consensus 178 ~g~~v~~~~~--D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~ 255 (329)
.|.+..+... -...++ ..+.||.|+ ++|++-|..+ ..
T Consensus 161 lg~~~~~~~lplgvE~Lp-------------------~~~~FDtVF------~MGVLYHrr~----------------Pl 199 (315)
T PF08003_consen 161 LGQDPPVFELPLGVEDLP-------------------NLGAFDTVF------SMGVLYHRRS----------------PL 199 (315)
T ss_pred hCCCccEEEcCcchhhcc-------------------ccCCcCEEE------EeeehhccCC----------------HH
Confidence 4444222222 222222 136899999 5888744222 23
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCCCccc
Q psy15212 256 KILNNLWKMLKPGGKLLFVTCSLWFEE 282 (329)
Q Consensus 256 ~lL~~a~~~LkpgG~lvysTCS~~~~E 282 (329)
..|......|++||.||.-|--+..++
T Consensus 200 ~~L~~Lk~~L~~gGeLvLETlvi~g~~ 226 (315)
T PF08003_consen 200 DHLKQLKDSLRPGGELVLETLVIDGDE 226 (315)
T ss_pred HHHHHHHHhhCCCCEEEEEEeeecCCC
Confidence 457777888999999999876555443
No 169
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.77 E-value=2.2e-08 Score=92.74 Aligned_cols=86 Identities=23% Similarity=0.235 Sum_probs=69.5
Q ss_pred HHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhh
Q psy15212 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDI 201 (329)
Q Consensus 122 ~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~ 201 (329)
..+...+++.+|++|||+|||+|..|..+++..+ +|+|+|+++.+++.+++++.. -.++++++|+..++.
T Consensus 32 ~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~--~~v~~i~~D~~~~~~------- 101 (272)
T PRK00274 32 DKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE--DNLTIIEGDALKVDL------- 101 (272)
T ss_pred HHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc--CceEEEEChhhcCCH-------
Confidence 3445566788899999999999999999998865 999999999999999988753 248899999987651
Q ss_pred cccccccccccCCCCCCEEEEccCCcc
Q psy15212 202 NKKTNNRFRFYKNKYFDRILADLPCTG 228 (329)
Q Consensus 202 ~~~~~~~~~~~~~~~fD~Vl~D~PCsg 228 (329)
.+..+|.|+.++|+.-
T Consensus 102 -----------~~~~~~~vv~NlPY~i 117 (272)
T PRK00274 102 -----------SELQPLKVVANLPYNI 117 (272)
T ss_pred -----------HHcCcceEEEeCCccc
Confidence 1111699999999863
No 170
>PRK03612 spermidine synthase; Provisional
Probab=98.77 E-value=5.7e-08 Score=97.82 Aligned_cols=114 Identities=27% Similarity=0.320 Sum_probs=83.0
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHH--HHHc---CC---ceEEEecCccccchhhhhhhh
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISEN--LKRL---NL---KATLILSDISKINLKKLYIDI 201 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n--~~~~---g~---~v~~~~~D~~~~~~~~~~~~~ 201 (329)
.+..+|||+|+|.|..+..+++..+ .+|+++|+|++.++.++++ +... .. +++++.+|+.+..
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l-------- 367 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWL-------- 367 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHH--------
Confidence 4457999999999999999987644 6999999999999999994 3222 12 2789999998753
Q ss_pred cccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCC
Q psy15212 202 NKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSL 278 (329)
Q Consensus 202 ~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~ 278 (329)
.. ..++||+|++|+|... .|.. .++ ...++++.+.+.|+|||.++..+++-
T Consensus 368 --------~~-~~~~fDvIi~D~~~~~------~~~~---------~~L--~t~ef~~~~~~~L~pgG~lv~~~~~~ 418 (521)
T PRK03612 368 --------RK-LAEKFDVIIVDLPDPS------NPAL---------GKL--YSVEFYRLLKRRLAPDGLLVVQSTSP 418 (521)
T ss_pred --------Hh-CCCCCCEEEEeCCCCC------Ccch---------hcc--chHHHHHHHHHhcCCCeEEEEecCCc
Confidence 11 2468999999987431 0110 000 12567888899999999999877653
No 171
>KOG3420|consensus
Probab=98.77 E-value=6.7e-09 Score=85.30 Aligned_cols=78 Identities=17% Similarity=0.247 Sum_probs=67.6
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
-+|.+++|+|||.|..+++.+......|+|+|+++..++...+|++...+.+.++++|..+..
T Consensus 47 iEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle----------------- 109 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLE----------------- 109 (185)
T ss_pred ccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchh-----------------
Confidence 468899999999999997666433379999999999999999999999998999999988865
Q ss_pred ccCCCCCCEEEEccCC
Q psy15212 211 FYKNKYFDRILADLPC 226 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~PC 226 (329)
+..+.||.++.|||.
T Consensus 110 -~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 110 -LKGGIFDTAVINPPF 124 (185)
T ss_pred -ccCCeEeeEEecCCC
Confidence 245899999999994
No 172
>PRK05785 hypothetical protein; Provisional
Probab=98.77 E-value=4.8e-08 Score=87.98 Aligned_cols=91 Identities=13% Similarity=0.237 Sum_probs=68.2
Q ss_pred CCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRF 211 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 211 (329)
++.+|||+|||+|..+..+++..+.+|+|+|+|+.+++.+++.. ..+++|+..++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~-------~~~~~d~~~lp------------------ 105 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD-------DKVVGSFEALP------------------ 105 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc-------ceEEechhhCC------------------
Confidence 47799999999999999999875569999999999999887641 34678887765
Q ss_pred cCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCC
Q psy15212 212 YKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 269 (329)
Q Consensus 212 ~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG 269 (329)
+.+++||.|++- .+ ++.-++ ..+.|++..+.|||.+
T Consensus 106 ~~d~sfD~v~~~-----~~-l~~~~d----------------~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 106 FRDKSFDVVMSS-----FA-LHASDN----------------IEKVIAEFTRVSRKQV 141 (226)
T ss_pred CCCCCEEEEEec-----Ch-hhccCC----------------HHHHHHHHHHHhcCce
Confidence 356899999952 11 221111 2457889999999843
No 173
>KOG2187|consensus
Probab=98.74 E-value=2.7e-08 Score=96.90 Aligned_cols=118 Identities=17% Similarity=0.237 Sum_probs=84.6
Q ss_pred hhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhcc
Q psy15212 125 APLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINK 203 (329)
Q Consensus 125 ~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~ 203 (329)
...++...+..++|+|||+|.+++.+|+... +|+++++++..+.-++.|++.+|++ .+++++.+.++- +.+.
T Consensus 376 ~e~~~l~~~k~llDv~CGTG~iglala~~~~-~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~-~sl~----- 448 (534)
T KOG2187|consen 376 GEWAGLPADKTLLDVCCGTGTIGLALARGVK-RVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLF-PSLL----- 448 (534)
T ss_pred HHHhCCCCCcEEEEEeecCCceehhhhcccc-ceeeeecChhhcchhhhcchhcCccceeeeecchhhcc-chhc-----
Confidence 4455677889999999999999999998655 9999999999999999999999998 899999776643 1110
Q ss_pred cccccccccCCCCCC-EEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCcc
Q psy15212 204 KTNNRFRFYKNKYFD-RILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFE 281 (329)
Q Consensus 204 ~~~~~~~~~~~~~fD-~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~ 281 (329)
.. .-..-+ ++++|||-.|.-. .+++ +.+..+.--+++|.+|..+-.
T Consensus 449 ------~~-~~~~~~~v~iiDPpR~Glh~------------------------~~ik-~l~~~~~~~rlvyvSCn~~t~ 495 (534)
T KOG2187|consen 449 ------TP-CCDSETLVAIIDPPRKGLHM------------------------KVIK-ALRAYKNPRRLVYVSCNPHTA 495 (534)
T ss_pred ------cc-CCCCCceEEEECCCcccccH------------------------HHHH-HHHhccCccceEEEEcCHHHh
Confidence 00 001334 8899999665311 1222 222233334899999987753
No 174
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.74 E-value=5e-08 Score=89.60 Aligned_cols=86 Identities=15% Similarity=0.195 Sum_probs=70.9
Q ss_pred HHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhh
Q psy15212 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYID 200 (329)
Q Consensus 121 s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~ 200 (329)
....+..+++.+++.|||+|||+|..|..+++. +.+|+|+|+++.+++.+++++... -.++++++|+..++
T Consensus 18 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~~~~~~-~~v~ii~~D~~~~~------- 88 (258)
T PRK14896 18 VDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIAA-GNVEIIEGDALKVD------- 88 (258)
T ss_pred HHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHhccC-CCEEEEEeccccCC-------
Confidence 444555667888999999999999999999987 459999999999999999988652 13889999998764
Q ss_pred hcccccccccccCCCCCCEEEEccCCcc
Q psy15212 201 INKKTNNRFRFYKNKYFDRILADLPCTG 228 (329)
Q Consensus 201 ~~~~~~~~~~~~~~~~fD~Vl~D~PCsg 228 (329)
+ ..||.|+.++|+.-
T Consensus 89 -----------~--~~~d~Vv~NlPy~i 103 (258)
T PRK14896 89 -----------L--PEFNKVVSNLPYQI 103 (258)
T ss_pred -----------c--hhceEEEEcCCccc
Confidence 1 35899999999863
No 175
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.71 E-value=1.2e-07 Score=84.83 Aligned_cols=119 Identities=15% Similarity=0.123 Sum_probs=78.3
Q ss_pred chhHHHHhhh--cCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHH------------H-cCCce
Q psy15212 118 DAAAQLAAPL--LDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLK------------R-LNLKA 182 (329)
Q Consensus 118 d~~s~l~~~~--l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~------------~-~g~~v 182 (329)
.+...+...+ +.+.++.+|||+|||.|.-+..+|++ |..|+|+|+|+..++.+.+... + .+.++
T Consensus 21 ~p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~-G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v 99 (218)
T PRK13255 21 EVNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQ-GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEI 99 (218)
T ss_pred CCCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhC-CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCce
Confidence 4444555443 23456789999999999999999974 5699999999999998642110 0 01236
Q ss_pred EEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH-HHHHHHHHHHH
Q psy15212 183 TLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL-SKYSCKILNNL 261 (329)
Q Consensus 183 ~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l-~~~q~~lL~~a 261 (329)
++.++|+..+. .. ....||.|+- .++ +..+ .....+.++..
T Consensus 100 ~~~~~D~~~l~----------------~~-~~~~fd~v~D------~~~---------------~~~l~~~~R~~~~~~l 141 (218)
T PRK13255 100 TIYCGDFFALT----------------AA-DLADVDAVYD------RAA---------------LIALPEEMRERYVQQL 141 (218)
T ss_pred EEEECcccCCC----------------cc-cCCCeeEEEe------hHh---------------HhhCCHHHHHHHHHHH
Confidence 78888888764 11 1247888872 111 1111 12345678899
Q ss_pred HhcCCCCCEEEEEc
Q psy15212 262 WKMLKPGGKLLFVT 275 (329)
Q Consensus 262 ~~~LkpgG~lvysT 275 (329)
.++|+|||++++.|
T Consensus 142 ~~lL~pgG~~~l~~ 155 (218)
T PRK13255 142 AALLPAGCRGLLVT 155 (218)
T ss_pred HHHcCCCCeEEEEE
Confidence 99999999755544
No 176
>KOG1663|consensus
Probab=98.71 E-value=2.7e-07 Score=81.74 Aligned_cols=128 Identities=13% Similarity=0.107 Sum_probs=99.9
Q ss_pred EEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCc
Q psy15212 114 CSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDI 189 (329)
Q Consensus 114 ~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~ 189 (329)
+.+-+.-.++...++..-...++||+|.-+|.-++.+|...+ |+|+++|+++...+...+..+..|+. ++++++++
T Consensus 55 m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a 134 (237)
T KOG1663|consen 55 MLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPA 134 (237)
T ss_pred eecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecch
Confidence 444566667777777666678999999999999999998887 89999999999999999999999996 89999988
Q ss_pred cccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCC
Q psy15212 190 SKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 269 (329)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG 269 (329)
.+.- .++. .....+.||.+++|+- . .+ .....+++.+++|+||
T Consensus 135 ~esL-d~l~-----------~~~~~~tfDfaFvDad---------------K------~n----Y~~y~e~~l~Llr~GG 177 (237)
T KOG1663|consen 135 LESL-DELL-----------ADGESGTFDFAFVDAD---------------K------DN----YSNYYERLLRLLRVGG 177 (237)
T ss_pred hhhH-HHHH-----------hcCCCCceeEEEEccc---------------h------HH----HHHHHHHHHhhccccc
Confidence 7632 1111 1124578999999973 1 11 2267889999999999
Q ss_pred EEEEEcCCC
Q psy15212 270 KLLFVTCSL 278 (329)
Q Consensus 270 ~lvysTCS~ 278 (329)
.|++-.-++
T Consensus 178 vi~~DNvl~ 186 (237)
T KOG1663|consen 178 VIVVDNVLW 186 (237)
T ss_pred EEEEecccc
Confidence 999976443
No 177
>KOG1541|consensus
Probab=98.69 E-value=1.4e-07 Score=82.85 Aligned_cols=144 Identities=23% Similarity=0.329 Sum_probs=100.0
Q ss_pred ceEEEechhHHHHhhhcCCCC--CCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCc
Q psy15212 112 GFCSIQDAAAQLAAPLLDIRS--GMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDI 189 (329)
Q Consensus 112 G~~~~Qd~~s~l~~~~l~~~~--g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~ 189 (329)
-.+++|-+-+.-+.++|+... ..-|||+|||+|--+..+.+-. -..+++|+|+.|++.+.+. .+ ...++.+|+
T Consensus 28 ri~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~G-h~wiGvDiSpsML~~a~~~--e~--egdlil~DM 102 (270)
T KOG1541|consen 28 RIVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSG-HQWIGVDISPSMLEQAVER--EL--EGDLILCDM 102 (270)
T ss_pred eeeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCC-ceEEeecCCHHHHHHHHHh--hh--hcCeeeeec
Confidence 346789998888888887655 5689999999998887776533 4889999999999998872 22 245777887
Q ss_pred cccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHH-HHHHHHHHHHHHHHHhcCCCC
Q psy15212 190 SKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDI-KKLSKYSCKILNNLWKMLKPG 268 (329)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~-~~l~~~q~~lL~~a~~~Lkpg 268 (329)
..-- + +.++.||.+|. .+ .+.|.-+...- ..-.+....+....+..|++|
T Consensus 103 G~Gl----------------p-frpGtFDg~IS------IS------AvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg 153 (270)
T KOG1541|consen 103 GEGL----------------P-FRPGTFDGVIS------IS------AVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRG 153 (270)
T ss_pred CCCC----------------C-CCCCccceEEE------ee------eeeeecccCccccChHHHHHHHhhhhhhhhccC
Confidence 6532 2 36789999883 11 12343221111 111122344667778899999
Q ss_pred CEEEEEcCCCCccccHHHHHHHHhh
Q psy15212 269 GKLLFVTCSLWFEESEEQAIIFSKN 293 (329)
Q Consensus 269 G~lvysTCS~~~~Ene~vv~~~l~~ 293 (329)
++-|+- ...||+++++.++..
T Consensus 154 ~raV~Q----fYpen~~q~d~i~~~ 174 (270)
T KOG1541|consen 154 ARAVLQ----FYPENEAQIDMIMQQ 174 (270)
T ss_pred ceeEEE----ecccchHHHHHHHHH
Confidence 999874 567999999988764
No 178
>PRK06202 hypothetical protein; Provisional
Probab=98.69 E-value=1.1e-07 Score=85.85 Aligned_cols=78 Identities=15% Similarity=0.248 Sum_probs=56.8
Q ss_pred hhcCCCCCCeEEeecCCCchHHHHHHHhC---C--CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhh
Q psy15212 126 PLLDIRSGMYVLDACSAPGGKTCHLLEIA---D--IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYID 200 (329)
Q Consensus 126 ~~l~~~~g~~VLDlcag~G~kt~~la~~~---~--~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~ 200 (329)
..+...++.+|||+|||+|..+..+++.. + .+|+|+|+++.+++.++++....++. +...|+..+.
T Consensus 54 ~~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~--~~~~~~~~l~------- 124 (232)
T PRK06202 54 PALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVT--FRQAVSDELV------- 124 (232)
T ss_pred HhcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCe--EEEEeccccc-------
Confidence 33444567899999999999999888643 2 49999999999999999887655544 3334443333
Q ss_pred hcccccccccccCCCCCCEEEEc
Q psy15212 201 INKKTNNRFRFYKNKYFDRILAD 223 (329)
Q Consensus 201 ~~~~~~~~~~~~~~~~fD~Vl~D 223 (329)
..+++||.|++.
T Consensus 125 -----------~~~~~fD~V~~~ 136 (232)
T PRK06202 125 -----------AEGERFDVVTSN 136 (232)
T ss_pred -----------ccCCCccEEEEC
Confidence 134689999963
No 179
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.68 E-value=1.8e-07 Score=94.41 Aligned_cols=165 Identities=12% Similarity=0.107 Sum_probs=95.9
Q ss_pred CCeEEeecCCCchHHHHHHHhCC---------CEEEEEeCChhHHHHHHHHHHHcC-CceEEEecCccccchhhhhhhhc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD---------IKLISVDNNLSRLNMISENLKRLN-LKATLILSDISKINLKKLYIDIN 202 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~---------~~v~avD~~~~rl~~l~~n~~~~g-~~v~~~~~D~~~~~~~~~~~~~~ 202 (329)
+.+|||.|||+|++.++++.... ..++|+|+++..+..++.|+...+ ..+.+.+.|.......
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~------- 104 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLL------- 104 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccc-------
Confidence 45899999999999999987552 378999999999999999998876 2355555554432100
Q ss_pred ccccccccccCCCCCCEEEEccCCccccccccCC-----CC--cccCCh----hHHH-------------HHHHHHHHH-
Q psy15212 203 KKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP-----DI--PWLRRK----NDIK-------------KLSKYSCKI- 257 (329)
Q Consensus 203 ~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p-----~~--~~~~~~----~~~~-------------~l~~~q~~l- 257 (329)
.. . ...+.||+|+.+||+.......+.- +. .+.-.. +... ........+
T Consensus 105 -~~----~-~~~~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f 178 (524)
T TIGR02987 105 -NI----E-SYLDLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVF 178 (524)
T ss_pred -cc----c-cccCcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHH
Confidence 00 0 0125799999999998654322110 00 000000 0000 001122333
Q ss_pred HHHHHhcCCCCCEEEEEcCC-CCccccHHHHHHHHhhCCCcE-EecC--CCcccCCC
Q psy15212 258 LNNLWKMLKPGGKLLFVTCS-LWFEESEEQAIIFSKNHKDSI-RLNS--PGQLLPTV 310 (329)
Q Consensus 258 L~~a~~~LkpgG~lvysTCS-~~~~Ene~vv~~~l~~~~~~~-~~~~--~~~~~p~~ 310 (329)
++.+.++|++||++.+.+-+ +........+...+-.+.... +... ...++++.
T Consensus 179 ~~~~~~lL~~~G~~~~I~P~s~l~~~~~~~lR~~ll~~~~i~~I~~f~~~~~lF~~v 235 (524)
T TIGR02987 179 EEISLEIANKNGYVSIISPASWLGDKTGENLREYIFNNRLINCIQYFQEEAKLFSGV 235 (524)
T ss_pred HHHHHHhcCCCCEEEEEEChHHhcCccHHHHHHHHHhCCeeEEEEECCccccCcCCC
Confidence 46789999999999987633 334444444555443332332 2222 23566654
No 180
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.67 E-value=5.4e-08 Score=85.91 Aligned_cols=150 Identities=17% Similarity=0.099 Sum_probs=98.6
Q ss_pred CCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRF 211 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 211 (329)
+=.++||+|||+|-.+..+-.+.. +++++|+|..|++.+.++ |+--++.++|+..+. ..
T Consensus 125 ~F~~~lDLGCGTGL~G~~lR~~a~-~ltGvDiS~nMl~kA~eK----g~YD~L~~Aea~~Fl----------------~~ 183 (287)
T COG4976 125 PFRRMLDLGCGTGLTGEALRDMAD-RLTGVDISENMLAKAHEK----GLYDTLYVAEAVLFL----------------ED 183 (287)
T ss_pred ccceeeecccCcCcccHhHHHHHh-hccCCchhHHHHHHHHhc----cchHHHHHHHHHHHh----------------hh
Confidence 347999999999988888776554 999999999999987664 221234445554432 11
Q ss_pred cCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCcc----------
Q psy15212 212 YKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFE---------- 281 (329)
Q Consensus 212 ~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~---------- 281 (329)
..+++||.|. ..++..+..--..++.-+..+|+|||.+.||.-+...+
T Consensus 184 ~~~er~DLi~----------------------AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~R 241 (287)
T COG4976 184 LTQERFDLIV----------------------AADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQR 241 (287)
T ss_pred ccCCcccchh----------------------hhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhh
Confidence 2467899996 24454444445678889999999999999998665433
Q ss_pred --ccHHHHHHHHhhCCCcEEecCCCcccCCCCCCCCCCeEEEEEEE
Q psy15212 282 --ESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQ 325 (329)
Q Consensus 282 --Ene~vv~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~gff~a~l~ 325 (329)
..+..|...++.+ +++.+.....++-......-..+.|+|+.+
T Consensus 242 yAH~~~YVr~~l~~~-Gl~~i~~~~ttiR~d~g~pv~G~L~iark~ 286 (287)
T COG4976 242 YAHSESYVRALLAAS-GLEVIAIEDTTIRRDAGEPVPGILVIARKK 286 (287)
T ss_pred hccchHHHHHHHHhc-CceEEEeecccchhhcCCCCCCceEEEecC
Confidence 3567778888776 666655432111110001344577888754
No 181
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.67 E-value=3.8e-07 Score=94.98 Aligned_cols=107 Identities=17% Similarity=0.213 Sum_probs=79.2
Q ss_pred CCcccccceEEEechhH---HHHhhhc---CC-CCCCeEEeecCCCchHHHHHHHhC-----------------------
Q psy15212 105 KIPKFFNGFCSIQDAAA---QLAAPLL---DI-RSGMYVLDACSAPGGKTCHLLEIA----------------------- 154 (329)
Q Consensus 105 ~~~~~~~G~~~~Qd~~s---~l~~~~l---~~-~~g~~VLDlcag~G~kt~~la~~~----------------------- 154 (329)
..+.++.|+=..+.++. .+++.+| +. ++++.++|.+||+|.+.+.+|.+.
T Consensus 156 g~~L~rRgyr~~~~~Apl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~ 235 (702)
T PRK11783 156 GESLHQRGYRQATGEAPLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEA 235 (702)
T ss_pred CCchhhccCccCCCCCCCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHH
Confidence 34566667654444442 3444333 23 568899999999999998887531
Q ss_pred --------------------CCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhccccccccccc
Q psy15212 155 --------------------DIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNNRFRFY 212 (329)
Q Consensus 155 --------------------~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~ 212 (329)
..+|+|+|+++.+++.+++|+..+|+. +++..+|+.++. ...
T Consensus 236 ~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~----------------~~~ 299 (702)
T PRK11783 236 LWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLK----------------NPL 299 (702)
T ss_pred HHHHHHHHHHHHHhhcccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcc----------------ccc
Confidence 126999999999999999999999996 789999998764 111
Q ss_pred CCCCCCEEEEccCCc
Q psy15212 213 KNKYFDRILADLPCT 227 (329)
Q Consensus 213 ~~~~fD~Vl~D~PCs 227 (329)
..+.||.|++|||+.
T Consensus 300 ~~~~~d~IvtNPPYg 314 (702)
T PRK11783 300 PKGPTGLVISNPPYG 314 (702)
T ss_pred ccCCCCEEEECCCCc
Confidence 235799999999976
No 182
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.66 E-value=2.5e-07 Score=81.81 Aligned_cols=161 Identities=24% Similarity=0.282 Sum_probs=100.1
Q ss_pred hHHHHhhhc------CCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccc
Q psy15212 120 AAQLAAPLL------DIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLKATLILSDISK 191 (329)
Q Consensus 120 ~s~l~~~~l------~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~ 191 (329)
.|.|++.++ .+++|.+||-+||++|..-.|+++..+ |.|+|+|.++...+.+-...++. -++-.+.+|++.
T Consensus 55 RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R-~NIiPIl~DAr~ 133 (229)
T PF01269_consen 55 RSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR-PNIIPILEDARH 133 (229)
T ss_dssp T-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS-TTEEEEES-TTS
T ss_pred hhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC-CceeeeeccCCC
Confidence 377777765 367899999999999999999999877 89999999999998888666653 346678899998
Q ss_pred cchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHH-HHHHHhcCCCCCE
Q psy15212 192 INLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKI-LNNLWKMLKPGGK 270 (329)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~l-L~~a~~~LkpgG~ 270 (329)
+. ++..+ -+.+|+|++|..= | -|.++ +.+|-.+||+||.
T Consensus 134 P~--------------~Y~~l-v~~VDvI~~DVaQ---------p----------------~Qa~I~~~Na~~fLk~gG~ 173 (229)
T PF01269_consen 134 PE--------------KYRML-VEMVDVIFQDVAQ---------P----------------DQARIAALNARHFLKPGGH 173 (229)
T ss_dssp GG--------------GGTTT-S--EEEEEEE-SS---------T----------------THHHHHHHHHHHHEEEEEE
T ss_pred hH--------------Hhhcc-cccccEEEecCCC---------h----------------HHHHHHHHHHHhhccCCcE
Confidence 65 01111 2589999999861 1 15554 4567789999999
Q ss_pred EEEEc--CCC-CccccHHHHHHHHhhC--CCcEEecCCCcccCCCCCCCCCCeEEEEEEEe
Q psy15212 271 LLFVT--CSL-WFEESEEQAIIFSKNH--KDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 326 (329)
Q Consensus 271 lvysT--CS~-~~~Ene~vv~~~l~~~--~~~~~~~~~~~~~p~~~~~~~~~gff~a~l~k 326 (329)
++.+- -|+ ...+.+++.+.-.++- .+++.+.. ..+-|- +..--.++++.+|
T Consensus 174 ~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~-i~LePy----~~dH~~vv~~y~~ 229 (229)
T PF01269_consen 174 LIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQ-ITLEPY----ERDHAMVVGRYRK 229 (229)
T ss_dssp EEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEE-EE-TTT----STTEEEEEEEE--
T ss_pred EEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheE-eccCCC----CCCcEEEEEEecC
Confidence 98774 222 2334555555544432 24554431 122343 3334455665543
No 183
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.66 E-value=4.6e-07 Score=90.92 Aligned_cols=137 Identities=17% Similarity=0.180 Sum_probs=99.7
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhccccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
..+..+||+|||.|..++++|...+ ..++|+|++...+..+...+.+.|+. +.++..|+..+.
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~--------------- 410 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLIL--------------- 410 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHH---------------
Confidence 3467899999999999999999887 79999999999999999999999987 778888876543
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHH
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAI 288 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~ 288 (329)
..+.++++|.|.+.=|+- |.+....-.++ +|..+|+...+.|||||.+.+.|-. .+--+..+.
T Consensus 411 -~~~~~~sv~~i~i~FPDP------------WpKkrh~krRl--~~~~fl~~~~~~Lk~gG~i~~~TD~--~~y~~~~~~ 473 (506)
T PRK01544 411 -NDLPNNSLDGIYILFPDP------------WIKNKQKKKRI--FNKERLKILQDKLKDNGNLVFASDI--ENYFYEAIE 473 (506)
T ss_pred -HhcCcccccEEEEECCCC------------CCCCCCccccc--cCHHHHHHHHHhcCCCCEEEEEcCC--HHHHHHHHH
Confidence 234567899999988854 32222222222 3667899999999999999987653 222222222
Q ss_pred HHHhhCCCcEEe
Q psy15212 289 IFSKNHKDSIRL 300 (329)
Q Consensus 289 ~~l~~~~~~~~~ 300 (329)
.+..++.++..
T Consensus 474 -~~~~~~~f~~~ 484 (506)
T PRK01544 474 -LIQQNGNFEII 484 (506)
T ss_pred -HHHhCCCeEec
Confidence 33456667654
No 184
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.65 E-value=7.7e-07 Score=83.16 Aligned_cols=92 Identities=22% Similarity=0.285 Sum_probs=73.7
Q ss_pred hhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcc
Q psy15212 125 APLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINK 203 (329)
Q Consensus 125 ~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~ 203 (329)
..+|.+++|..++|+-+|-||-|..+++..+ ++|+|+|.++..++.++++++.++-.++++++++.++. ..+
T Consensus 13 l~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~-~~l------ 85 (305)
T TIGR00006 13 VEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFF-EHL------ 85 (305)
T ss_pred HHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHH-HHH------
Confidence 4456788999999999999999999999875 89999999999999999999877555889999988764 000
Q ss_pred cccccccccCCCCCCEEEEccCCccc
Q psy15212 204 KTNNRFRFYKNKYFDRILADLPCTGS 229 (329)
Q Consensus 204 ~~~~~~~~~~~~~fD~Vl~D~PCsg~ 229 (329)
.......+|.|++|-=+|+.
T Consensus 86 ------~~~~~~~vDgIl~DLGvSS~ 105 (305)
T TIGR00006 86 ------DELLVTKIDGILVDLGVSSP 105 (305)
T ss_pred ------HhcCCCcccEEEEeccCCHh
Confidence 00122469999999877765
No 185
>KOG3191|consensus
Probab=98.62 E-value=6.3e-07 Score=76.53 Aligned_cols=136 Identities=13% Similarity=0.178 Sum_probs=96.1
Q ss_pred CCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
...++++|||+|-.++.+++..+ ...++.|+|+..++...+.++.+++.+.++..|...--
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l----------------- 106 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGL----------------- 106 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhh-----------------
Confidence 46899999999999999998876 68899999999999999999999999889999876532
Q ss_pred ccCCCCCCEEEEccCCcccc--ccc-cCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHH
Q psy15212 211 FYKNKYFDRILADLPCTGSG--VVR-RNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQA 287 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~PCsg~G--~~~-~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv 287 (329)
..++.|+++.+||+--+- -+. +.-+..|.-. ..-...-.++|...-.+|.|.|.++..+|.-+ +.+-|
T Consensus 107 --~~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG----~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N---~p~ei 177 (209)
T KOG3191|consen 107 --RNESVDVLVFNPPYVPTSDEEIGDEGIASAWAGG----KDGREVTDRLLPQVPDILSPRGVFYLVALRAN---KPKEI 177 (209)
T ss_pred --ccCCccEEEECCCcCcCCcccchhHHHHHHHhcC----cchHHHHHHHHhhhhhhcCcCceEEeeehhhc---CHHHH
Confidence 348999999999985321 100 0001112100 11123345678888889999998888777522 22334
Q ss_pred HHHHhhC
Q psy15212 288 IIFSKNH 294 (329)
Q Consensus 288 ~~~l~~~ 294 (329)
-++++..
T Consensus 178 ~k~l~~~ 184 (209)
T KOG3191|consen 178 LKILEKK 184 (209)
T ss_pred HHHHhhc
Confidence 4466654
No 186
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.62 E-value=4.7e-07 Score=81.08 Aligned_cols=58 Identities=21% Similarity=0.270 Sum_probs=50.9
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCC--ceEEEecCc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL--KATLILSDI 189 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~--~v~~~~~D~ 189 (329)
.++.+|||+|||+|..+..+++.. ..|+++|+++.+++.++++....+. .+.+..+|.
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~-~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~ 121 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG-AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDL 121 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCc
Confidence 567899999999999999998754 5899999999999999999998887 378888883
No 187
>PRK10742 putative methyltransferase; Provisional
Probab=98.62 E-value=1.7e-07 Score=84.66 Aligned_cols=89 Identities=15% Similarity=0.104 Sum_probs=73.9
Q ss_pred HHHHhhhcCCCCCC--eEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHc------CC---c-eEEEecC
Q psy15212 121 AQLAAPLLDIRSGM--YVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRL------NL---K-ATLILSD 188 (329)
Q Consensus 121 s~l~~~~l~~~~g~--~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~------g~---~-v~~~~~D 188 (329)
.+..+.++++++|. +|||++||.|.-++.++.+ |++|+++|.++.....+++++++. +. . ++++++|
T Consensus 75 ~~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~-G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~d 153 (250)
T PRK10742 75 GEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (250)
T ss_pred ccHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCc
Confidence 46678888889988 8999999999999999986 558999999999999999999995 32 3 7788888
Q ss_pred ccccchhhhhhhhcccccccccccCCCCCCEEEEccCCc
Q psy15212 189 ISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCT 227 (329)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCs 227 (329)
+..+- .. ....||+|.+|||+.
T Consensus 154 a~~~L----------------~~-~~~~fDVVYlDPMfp 175 (250)
T PRK10742 154 SLTAL----------------TD-ITPRPQVVYLDPMFP 175 (250)
T ss_pred HHHHH----------------hh-CCCCCcEEEECCCCC
Confidence 87653 11 124799999999987
No 188
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.61 E-value=3.7e-07 Score=79.19 Aligned_cols=71 Identities=17% Similarity=0.214 Sum_probs=56.4
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
+.||.+|||+|||.|....++.+..+...+|+|+++..+..+.+ .|+ .++++|+..--
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~----rGv--~Viq~Dld~gL---------------- 68 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVA----RGV--SVIQGDLDEGL---------------- 68 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHH----cCC--CEEECCHHHhH----------------
Confidence 56799999999999999999888666899999999998765443 354 57888876532
Q ss_pred cccCCCCCCEEEE
Q psy15212 210 RFYKNKYFDRILA 222 (329)
Q Consensus 210 ~~~~~~~fD~Vl~ 222 (329)
..++++.||.|++
T Consensus 69 ~~f~d~sFD~VIl 81 (193)
T PF07021_consen 69 ADFPDQSFDYVIL 81 (193)
T ss_pred hhCCCCCccEEeh
Confidence 2357899999995
No 189
>PLN02823 spermine synthase
Probab=98.61 E-value=1.1e-06 Score=83.60 Aligned_cols=132 Identities=17% Similarity=0.141 Sum_probs=88.0
Q ss_pred CCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcC-----CceEEEecCccccchhhhhhhhccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLN-----LKATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g-----~~v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
..+||-+|.|.|+.+..+++..+ .+|+++|+++..++.+++.+...+ -+++++.+|+..+-
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L------------- 170 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAEL------------- 170 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHH-------------
Confidence 35899999999999988887554 689999999999999999886432 23889999998763
Q ss_pred ccccccCCCCCCEEEEccCCccc-cccccCCCCcccCChhHHHHHHHHHHHHHH-HHHhcCCCCCEEEEEcCCCC----c
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGS-GVVRRNPDIPWLRRKNDIKKLSKYSCKILN-NLWKMLKPGGKLLFVTCSLW----F 280 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~-G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~-~a~~~LkpgG~lvysTCS~~----~ 280 (329)
. ...++||+|++|.+-... |. |. . -...++++ .+.+.|+|||.++.-.-|.. +
T Consensus 171 ---~-~~~~~yDvIi~D~~dp~~~~~----~~-----------~--Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~ 229 (336)
T PLN02823 171 ---E-KRDEKFDVIIGDLADPVEGGP----CY-----------Q--LYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHK 229 (336)
T ss_pred ---h-hCCCCccEEEecCCCccccCc----ch-----------h--hccHHHHHHHHHHhcCCCcEEEEeccCcchhccH
Confidence 1 124689999999752110 10 00 0 01245676 67889999998875433322 2
Q ss_pred cccHHHHHHHHhhCCCcE
Q psy15212 281 EESEEQAIIFSKNHKDSI 298 (329)
Q Consensus 281 ~Ene~vv~~~l~~~~~~~ 298 (329)
+....+++.+-+-.+...
T Consensus 230 ~~~~~i~~tl~~vF~~v~ 247 (336)
T PLN02823 230 EVFSSIYNTLRQVFKYVV 247 (336)
T ss_pred HHHHHHHHHHHHhCCCEE
Confidence 223344444444444443
No 190
>KOG1596|consensus
Probab=98.55 E-value=9e-07 Score=78.69 Aligned_cols=132 Identities=22% Similarity=0.216 Sum_probs=101.3
Q ss_pred HHHHhhhcC------CCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCcccc
Q psy15212 121 AQLAAPLLD------IRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKI 192 (329)
Q Consensus 121 s~l~~~~l~------~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~ 192 (329)
|.|++.++. ++||.+||=+||++|..-.|+++..+ +.|+|+|.|...=..|..+.++. -++..+..|++.+
T Consensus 139 SKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR-tNiiPIiEDArhP 217 (317)
T KOG1596|consen 139 SKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR-TNIIPIIEDARHP 217 (317)
T ss_pred HHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc-CCceeeeccCCCc
Confidence 778877763 78999999999999999999999887 89999999988777776665543 3366677899876
Q ss_pred chhhhhhhhcccccccccc-cCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHH-HHHhcCCCCCE
Q psy15212 193 NLKKLYIDINKKTNNRFRF-YKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILN-NLWKMLKPGGK 270 (329)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~-~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~-~a~~~LkpgG~ 270 (329)
. .+ +.-...|.|+.|.+-+ .|.+++. +|..+||+||.
T Consensus 218 ~----------------KYRmlVgmVDvIFaDvaqp-------------------------dq~RivaLNA~~FLk~gGh 256 (317)
T KOG1596|consen 218 A----------------KYRMLVGMVDVIFADVAQP-------------------------DQARIVALNAQYFLKNGGH 256 (317)
T ss_pred h----------------heeeeeeeEEEEeccCCCc-------------------------hhhhhhhhhhhhhhccCCe
Confidence 5 11 1224789999998732 2555554 68889999999
Q ss_pred EEEE---cCCCCccccHHHHHHHHhhC
Q psy15212 271 LLFV---TCSLWFEESEEQAIIFSKNH 294 (329)
Q Consensus 271 lvys---TCS~~~~Ene~vv~~~l~~~ 294 (329)
+|.| .|+-....+|.|.+.-.++.
T Consensus 257 fvisikancidstv~ae~vFa~Ev~kl 283 (317)
T KOG1596|consen 257 FVISIKANCIDSTVFAEAVFAAEVKKL 283 (317)
T ss_pred EEEEEecccccccccHHHHHHHHHHHH
Confidence 9987 58888888888877665543
No 191
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.54 E-value=1.1e-07 Score=81.41 Aligned_cols=98 Identities=13% Similarity=0.231 Sum_probs=82.5
Q ss_pred CeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhccccccccccc
Q psy15212 134 MYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNRFRFY 212 (329)
Q Consensus 134 ~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~ 212 (329)
+.+-|+|||+|..+..+|+... +|+|++.++.+.+.+++|++-.|.. ++++++|++... +
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~-rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~------------------f 94 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAE-RVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYD------------------F 94 (252)
T ss_pred hceeeccCCcchHHHHHHhhhc-eEEEEecCcHHHHHhhhcCCCCCCcceEEEeccccccc------------------c
Confidence 7999999999999998887654 9999999999999999999888876 899999999876 2
Q ss_pred CCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEE
Q psy15212 213 KNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLL 272 (329)
Q Consensus 213 ~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lv 272 (329)
+..|.|+|. .-+..-+.+.|...+.+++++||..++++
T Consensus 95 --e~ADvvicE--------------------mlDTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 95 --ENADVVICE--------------------MLDTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred --cccceeHHH--------------------HhhHHhhcccccHHHHHHHHHhhcCCccc
Confidence 578999863 22334455678889999999999999886
No 192
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.48 E-value=6.6e-07 Score=84.94 Aligned_cols=112 Identities=22% Similarity=0.360 Sum_probs=72.6
Q ss_pred CCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHc-------C----CceEEEecCccccchhhhhhh
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRL-------N----LKATLILSDISKINLKKLYID 200 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~-------g----~~v~~~~~D~~~~~~~~~~~~ 200 (329)
++.+|||||||-||=..-.....-..++|+|++...++.++++.+.+ . ....++.+|.....+.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~----- 136 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLR----- 136 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHH-----
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhh-----
Confidence 78999999999999877776542279999999999999999998321 1 2256788887653311
Q ss_pred hcccccccccccCC--CCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 201 INKKTNNRFRFYKN--KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 201 ~~~~~~~~~~~~~~--~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
..+.. .+||+|=|=- .+++....+. .-+.+|..+...|+|||+++-.|
T Consensus 137 ---------~~~~~~~~~FDvVScQF------------alHY~Fese~------~ar~~l~Nvs~~Lk~GG~FIgT~ 186 (331)
T PF03291_consen 137 ---------EKLPPRSRKFDVVSCQF------------ALHYAFESEE------KARQFLKNVSSLLKPGGYFIGTT 186 (331)
T ss_dssp ---------CTSSSTTS-EEEEEEES-------------GGGGGSSHH------HHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ---------hhccccCCCcceeehHH------------HHHHhcCCHH------HHHHHHHHHHHhcCCCCEEEEEe
Confidence 11222 4899995411 1122222111 23558999999999999988764
No 193
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.48 E-value=1.3e-06 Score=80.01 Aligned_cols=84 Identities=21% Similarity=0.291 Sum_probs=67.3
Q ss_pred HHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhh
Q psy15212 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDI 201 (329)
Q Consensus 122 ~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~ 201 (329)
.-+...++..++++|||+|||+|..|..+++... .|+++|+++.+++.+++++.. .-+++++++|+...+.
T Consensus 19 ~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~-~~~v~v~~~D~~~~~~------- 89 (253)
T TIGR00755 19 QKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL-YERLEVIEGDALKVDL------- 89 (253)
T ss_pred HHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc-CCcEEEEECchhcCCh-------
Confidence 3344456678899999999999999999998765 899999999999999988754 2237899999987651
Q ss_pred cccccccccccCCCCCC---EEEEccCCc
Q psy15212 202 NKKTNNRFRFYKNKYFD---RILADLPCT 227 (329)
Q Consensus 202 ~~~~~~~~~~~~~~~fD---~Vl~D~PCs 227 (329)
..|| .|+.++|+.
T Consensus 90 -------------~~~d~~~~vvsNlPy~ 105 (253)
T TIGR00755 90 -------------PDFPKQLKVVSNLPYN 105 (253)
T ss_pred -------------hHcCCcceEEEcCChh
Confidence 1355 999999964
No 194
>KOG2899|consensus
Probab=98.47 E-value=6e-07 Score=79.98 Aligned_cols=46 Identities=13% Similarity=0.072 Sum_probs=42.5
Q ss_pred CCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRL 178 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~ 178 (329)
+..+||+||-+|..|+++|+..+ ..|+|+||++..++.++++++..
T Consensus 59 ~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~ 105 (288)
T KOG2899|consen 59 PKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFP 105 (288)
T ss_pred cceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcccc
Confidence 56899999999999999999888 69999999999999999998764
No 195
>KOG1661|consensus
Probab=98.47 E-value=6.5e-07 Score=78.16 Aligned_cols=101 Identities=23% Similarity=0.336 Sum_probs=78.9
Q ss_pred hcC--CCCCCeEEeecCCCchHHHHHHHhCC--C-EEEEEeCChhHHHHHHHHHHHcC--------C---ceEEEecCcc
Q psy15212 127 LLD--IRSGMYVLDACSAPGGKTCHLLEIAD--I-KLISVDNNLSRLNMISENLKRLN--------L---KATLILSDIS 190 (329)
Q Consensus 127 ~l~--~~~g~~VLDlcag~G~kt~~la~~~~--~-~v~avD~~~~rl~~l~~n~~~~g--------~---~v~~~~~D~~ 190 (329)
+|+ .+||...||+|+|+|..|..++.+.+ + ...++|..++.++..++|+.+.- + +..++++|.+
T Consensus 75 ~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr 154 (237)
T KOG1661|consen 75 YLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGR 154 (237)
T ss_pred HHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCcc
Confidence 455 78999999999999999999997766 3 44999999999999999998653 1 1567788877
Q ss_pred ccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCE
Q psy15212 191 KINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 270 (329)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~ 270 (329)
... ....+||+|.|-|--| ++.++.+..|++||+
T Consensus 155 ~g~------------------~e~a~YDaIhvGAaa~----------------------------~~pq~l~dqL~~gGr 188 (237)
T KOG1661|consen 155 KGY------------------AEQAPYDAIHVGAAAS----------------------------ELPQELLDQLKPGGR 188 (237)
T ss_pred ccC------------------CccCCcceEEEccCcc----------------------------ccHHHHHHhhccCCe
Confidence 643 3567999999876533 234555667999999
Q ss_pred EEE
Q psy15212 271 LLF 273 (329)
Q Consensus 271 lvy 273 (329)
|+.
T Consensus 189 lli 191 (237)
T KOG1661|consen 189 LLI 191 (237)
T ss_pred EEE
Confidence 986
No 196
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=98.47 E-value=8e-07 Score=88.77 Aligned_cols=169 Identities=17% Similarity=0.121 Sum_probs=112.7
Q ss_pred ceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-----CEEEEEeCChhHHHHHHHHHHHcCCc--eEE
Q psy15212 112 GFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-----IKLISVDNNLSRLNMISENLKRLNLK--ATL 184 (329)
Q Consensus 112 G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-----~~v~avD~~~~rl~~l~~n~~~~g~~--v~~ 184 (329)
|.++--..-+.+.+.++.|+++.+|+|.|||+||..+..++.++ ..++|.|+++.....++.|+--.|+. +.+
T Consensus 166 GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i 245 (489)
T COG0286 166 GEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANI 245 (489)
T ss_pred CccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccc
Confidence 88888788889999999998999999999999999999887764 46899999999999999999988886 466
Q ss_pred EecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccC-CCC-cccCChhHHHHHHHHH-HHHHHHH
Q psy15212 185 ILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRN-PDI-PWLRRKNDIKKLSKYS-CKILNNL 261 (329)
Q Consensus 185 ~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~-p~~-~~~~~~~~~~~l~~~q-~~lL~~a 261 (329)
.++|...-+.. . ......+||.|+.+||.|+.+...-. ... .|.............. ..++.+.
T Consensus 246 ~~~dtl~~~~~----------~---~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~ 312 (489)
T COG0286 246 RHGDTLSNPKH----------D---DKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHI 312 (489)
T ss_pred cccccccCCcc----------c---ccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHH
Confidence 66665443200 0 00134689999999999866654321 111 0100000000000001 4578888
Q ss_pred HhcCCCCCEEE--EEcCCCCccccHHHHHHHHhh
Q psy15212 262 WKMLKPGGKLL--FVTCSLWFEESEEQAIIFSKN 293 (329)
Q Consensus 262 ~~~LkpgG~lv--ysTCS~~~~Ene~vv~~~l~~ 293 (329)
...|+|||+.. ...-.+...-+|..|...+-.
T Consensus 313 ~~~l~~~g~aaivl~~gvlfr~~~e~~IR~~l~~ 346 (489)
T COG0286 313 LYKLKPGGRAAIVLPDGVLFRGGAEKDIRKDLLE 346 (489)
T ss_pred HHhcCCCceEEEEecCCcCcCCCchHHHHHHHHh
Confidence 88999987433 223334444467777776654
No 197
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=98.44 E-value=7.4e-06 Score=75.53 Aligned_cols=93 Identities=23% Similarity=0.318 Sum_probs=74.8
Q ss_pred HhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhh
Q psy15212 124 AAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDI 201 (329)
Q Consensus 124 ~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~ 201 (329)
+..+|.+.++...+|.--|-||.+..+++.++ ++++|+|.++..++.+++.+..++-.+.+++..+.++.. .+
T Consensus 15 ~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~-~l---- 89 (314)
T COG0275 15 VVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLAE-AL---- 89 (314)
T ss_pred HHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHHH-HH----
Confidence 45677899999999999999999999999887 789999999999999999999988778999988776541 00
Q ss_pred cccccccccccCCCCCCEEEEccCCccc
Q psy15212 202 NKKTNNRFRFYKNKYFDRILADLPCTGS 229 (329)
Q Consensus 202 ~~~~~~~~~~~~~~~fD~Vl~D~PCsg~ 229 (329)
......++|.||+|-=-|+.
T Consensus 90 --------~~~~i~~vDGiL~DLGVSS~ 109 (314)
T COG0275 90 --------KELGIGKVDGILLDLGVSSP 109 (314)
T ss_pred --------HhcCCCceeEEEEeccCCcc
Confidence 00123588999998655543
No 198
>KOG2730|consensus
Probab=98.39 E-value=4e-07 Score=79.91 Aligned_cols=110 Identities=18% Similarity=0.276 Sum_probs=80.4
Q ss_pred cccceEEEechh--HHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEE
Q psy15212 109 FFNGFCSIQDAA--AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATL 184 (329)
Q Consensus 109 ~~~G~~~~Qd~~--s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~ 184 (329)
+.+|++.+--+. -.++......-.-+.|+|..||-||-|++.|.... .|+++|+++-++..+++|++-+|++ +++
T Consensus 69 d~e~wfsvTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItF 147 (263)
T KOG2730|consen 69 DREGWFSVTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITF 147 (263)
T ss_pred cccceEEeccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEE
Confidence 346777664332 22222222222456899999999999999997654 9999999999999999999999997 899
Q ss_pred EecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccc
Q psy15212 185 ILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVR 233 (329)
Q Consensus 185 ~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~ 233 (329)
+++|..+.- ..+. +....+|.|+.-||-+|.|..+
T Consensus 148 I~GD~ld~~-~~lq-------------~~K~~~~~vf~sppwggp~y~~ 182 (263)
T KOG2730|consen 148 ICGDFLDLA-SKLK-------------ADKIKYDCVFLSPPWGGPSYLR 182 (263)
T ss_pred EechHHHHH-HHHh-------------hhhheeeeeecCCCCCCcchhh
Confidence 999988753 1111 1223578999999999887754
No 199
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=1.6e-06 Score=79.04 Aligned_cols=88 Identities=22% Similarity=0.225 Sum_probs=72.8
Q ss_pred HHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhh
Q psy15212 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDI 201 (329)
Q Consensus 122 ~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~ 201 (329)
.-++...++.+++.||++|+|.|+.|..+++... +|+|+|+|+..+..+++.+. ..-+++++++|+.+.+.
T Consensus 20 ~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~-~~~n~~vi~~DaLk~d~------- 90 (259)
T COG0030 20 DKIVEAANISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFA-PYDNLTVINGDALKFDF------- 90 (259)
T ss_pred HHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcc-cccceEEEeCchhcCcc-------
Confidence 4455667788899999999999999999999765 89999999999999999887 22348999999998762
Q ss_pred cccccccccccCCC-CCCEEEEccCCccc
Q psy15212 202 NKKTNNRFRFYKNK-YFDRILADLPCTGS 229 (329)
Q Consensus 202 ~~~~~~~~~~~~~~-~fD~Vl~D~PCsg~ 229 (329)
..- .+++|+.+-||.-+
T Consensus 91 -----------~~l~~~~~vVaNlPY~Is 108 (259)
T COG0030 91 -----------PSLAQPYKVVANLPYNIS 108 (259)
T ss_pred -----------hhhcCCCEEEEcCCCccc
Confidence 111 68999999998743
No 200
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.34 E-value=6.3e-06 Score=75.18 Aligned_cols=109 Identities=19% Similarity=0.265 Sum_probs=79.4
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCC-----ceEEEecCccccchhhhhhhhcccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNL-----KATLILSDISKINLKKLYIDINKKT 205 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~-----~v~~~~~D~~~~~~~~~~~~~~~~~ 205 (329)
...+||=+|.|.|+.+..+.+..+ .+|++||+++..++.+++-+..... +++++.+|+..+-
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l------------ 143 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFL------------ 143 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHH------------
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHH------------
Confidence 456999999999999999987654 6999999999999999998765321 3899999998764
Q ss_pred cccccccCCC-CCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 206 NNRFRFYKNK-YFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 206 ~~~~~~~~~~-~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
.. ..+ +||+|++|.+- ..|.. .. . .-.++++.+.+.|+|||.++.-.
T Consensus 144 ----~~-~~~~~yDvIi~D~~d-p~~~~-----~~-l-----------~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 144 ----KE-TQEEKYDVIIVDLTD-PDGPA-----PN-L-----------FTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp ----HT-SSST-EEEEEEESSS-TTSCG-----GG-G-----------SSHHHHHHHHHHEEEEEEEEEEE
T ss_pred ----Hh-ccCCcccEEEEeCCC-CCCCc-----cc-c-----------cCHHHHHHHHhhcCCCcEEEEEc
Confidence 11 224 89999999874 11110 00 1 12467888899999999988754
No 201
>KOG4300|consensus
Probab=98.34 E-value=1.8e-06 Score=75.24 Aligned_cols=116 Identities=15% Similarity=0.237 Sum_probs=82.2
Q ss_pred CeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eE-EEecCccccchhhhhhhhccccccccc
Q psy15212 134 MYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-AT-LILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 134 ~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~-~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
..||++|||||..--.+- ..+ ..|+++|.++++-+.+...++...-. +. ++++++.+++ +
T Consensus 78 ~~vLEvgcGtG~Nfkfy~-~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~----------------~ 140 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYP-WKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLP----------------Q 140 (252)
T ss_pred cceEEecccCCCCccccc-CCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCc----------------c
Confidence 368999999996533322 122 69999999999999999998887544 54 8999999876 2
Q ss_pred ccCCCCCCEEEEccC-CccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHHH
Q psy15212 211 FYKNKYFDRILADLP-CTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAII 289 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~P-Csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~ 289 (329)
+.+.++|.|++.-- ||-. -+.+.|.+..++|+|||++++-- |-.+.-.-...
T Consensus 141 -l~d~s~DtVV~TlvLCSve-----------------------~~~k~L~e~~rlLRpgG~iifiE---Hva~~y~~~n~ 193 (252)
T KOG4300|consen 141 -LADGSYDTVVCTLVLCSVE-----------------------DPVKQLNEVRRLLRPGGRIIFIE---HVAGEYGFWNR 193 (252)
T ss_pred -cccCCeeeEEEEEEEeccC-----------------------CHHHHHHHHHHhcCCCcEEEEEe---cccccchHHHH
Confidence 35789999986432 5511 15678999999999999998752 22333334444
Q ss_pred HHhh
Q psy15212 290 FSKN 293 (329)
Q Consensus 290 ~l~~ 293 (329)
+++.
T Consensus 194 i~q~ 197 (252)
T KOG4300|consen 194 ILQQ 197 (252)
T ss_pred HHHH
Confidence 4443
No 202
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.34 E-value=1.1e-05 Score=70.18 Aligned_cols=130 Identities=23% Similarity=0.256 Sum_probs=95.3
Q ss_pred hHHHHhhhcC------CCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCcccc
Q psy15212 120 AAQLAAPLLD------IRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKI 192 (329)
Q Consensus 120 ~s~l~~~~l~------~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~ 192 (329)
.|.|++.+|. +++|++||=+||++|....|++...+ |.|+|+|.++.....+-..+++. -++-.+.+|++.+
T Consensus 58 RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R-~Ni~PIL~DA~~P 136 (231)
T COG1889 58 RSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR-PNIIPILEDARKP 136 (231)
T ss_pred hhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC-CCceeeecccCCc
Confidence 3677777664 67899999999999999999999988 99999999999999888887763 2366778999886
Q ss_pred chhhhhhhhcccccccccc-cCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHH-HHHHhcCCCCCE
Q psy15212 193 NLKKLYIDINKKTNNRFRF-YKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKIL-NNLWKMLKPGGK 270 (329)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~-~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL-~~a~~~LkpgG~ 270 (329)
. .+ .--+..|+|..|..- .-|.+++ .+|-.+||+||.
T Consensus 137 ~----------------~Y~~~Ve~VDviy~DVAQ-------------------------p~Qa~I~~~Na~~FLk~~G~ 175 (231)
T COG1889 137 E----------------KYRHLVEKVDVIYQDVAQ-------------------------PNQAEILADNAEFFLKKGGY 175 (231)
T ss_pred H----------------HhhhhcccccEEEEecCC-------------------------chHHHHHHHHHHHhcccCCe
Confidence 5 11 112579999998751 1256654 578899999996
Q ss_pred EEEE--cCCCCcc-ccHHHHHHHH
Q psy15212 271 LLFV--TCSLWFE-ESEEQAIIFS 291 (329)
Q Consensus 271 lvys--TCS~~~~-Ene~vv~~~l 291 (329)
++.+ +-|+... +-+++.+.-.
T Consensus 176 ~~i~iKArSIdvT~dp~~vf~~ev 199 (231)
T COG1889 176 VVIAIKARSIDVTADPEEVFKDEV 199 (231)
T ss_pred EEEEEEeecccccCCHHHHHHHHH
Confidence 6665 4455433 4445555343
No 203
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.31 E-value=3e-06 Score=83.61 Aligned_cols=117 Identities=21% Similarity=0.257 Sum_probs=79.5
Q ss_pred CCeEEeecCCCchHHHHHHHhC----C-CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhcccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA----D-IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKT 205 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~----~-~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~ 205 (329)
+..|||+|||+|..+...++.. + .+|+|+|.++.....+++.+++.+.. |+++.+|+++..
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~------------ 254 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVE------------ 254 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSC------------
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCC------------
Confidence 4679999999999987776544 2 69999999999999999888888884 999999999876
Q ss_pred cccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC--CCcccc
Q psy15212 206 NNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS--LWFEES 283 (329)
Q Consensus 206 ~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS--~~~~En 283 (329)
.+.++|+|+.-. +|.+.-+ + +--+.|..+-++|||||+++=+.++ +.|-+.
T Consensus 255 -------lpekvDIIVSEl----LGsfg~n---------E-------l~pE~Lda~~rfLkp~Gi~IP~~~t~ylaPiss 307 (448)
T PF05185_consen 255 -------LPEKVDIIVSEL----LGSFGDN---------E-------LSPECLDAADRFLKPDGIMIPSSYTSYLAPISS 307 (448)
T ss_dssp -------HSS-EEEEEE-------BTTBTT---------T-------SHHHHHHHGGGGEEEEEEEESSEEEEEEEEEE-
T ss_pred -------CCCceeEEEEec----cCCcccc---------c-------cCHHHHHHHHhhcCCCCEEeCcchhhEEEEeeC
Confidence 246899999532 2222111 1 1234678888999999999844433 334444
Q ss_pred HHHHH
Q psy15212 284 EEQAI 288 (329)
Q Consensus 284 e~vv~ 288 (329)
+..-+
T Consensus 308 ~~l~~ 312 (448)
T PF05185_consen 308 PKLYQ 312 (448)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44333
No 204
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=98.30 E-value=7.7e-06 Score=73.36 Aligned_cols=126 Identities=17% Similarity=0.092 Sum_probs=72.6
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
.|.+||=+| -+-.+...+.+.+ .+|+.+|+++..++-+++..++.|++++.++.|.++.-
T Consensus 44 ~gk~il~lG--DDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~L---------------- 105 (243)
T PF01861_consen 44 EGKRILFLG--DDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPL---------------- 105 (243)
T ss_dssp TT-EEEEES---TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS------------------
T ss_pred cCCEEEEEc--CCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccC----------------
Confidence 467887554 5544433333333 79999999999999999999999999999999999853
Q ss_pred cccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCcc-ccH-HHH
Q psy15212 210 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFE-ESE-EQA 287 (329)
Q Consensus 210 ~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~-Ene-~vv 287 (329)
+..-.++||.++.|||++-.|+ .-+|.++...||.-|...|-..|..+. -.+ ..+
T Consensus 106 P~~~~~~fD~f~TDPPyT~~G~-----------------------~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~ 162 (243)
T PF01861_consen 106 PEELRGKFDVFFTDPPYTPEGL-----------------------KLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEV 162 (243)
T ss_dssp -TTTSS-BSEEEE---SSHHHH-----------------------HHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHH
T ss_pred CHHHhcCCCEEEeCCCCCHHHH-----------------------HHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHH
Confidence 1112478999999999986554 347899999999766455555554331 122 357
Q ss_pred HHHHhhCCCcEE
Q psy15212 288 IIFSKNHKDSIR 299 (329)
Q Consensus 288 ~~~l~~~~~~~~ 299 (329)
++++.+. ++..
T Consensus 163 Q~~l~~~-gl~i 173 (243)
T PF01861_consen 163 QRFLLEM-GLVI 173 (243)
T ss_dssp HHHHHTS---EE
T ss_pred HHHHHHC-CcCH
Confidence 7777754 4443
No 205
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=98.29 E-value=8e-07 Score=83.02 Aligned_cols=93 Identities=23% Similarity=0.303 Sum_probs=65.1
Q ss_pred HhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhc
Q psy15212 124 AAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDIN 202 (329)
Q Consensus 124 ~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~ 202 (329)
+..+|.++++..++|+--|.||.|.++++..+ ++|+|+|.|+..++.++++++.++-.+.++++++.++. ...
T Consensus 12 vl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~--~~l---- 85 (310)
T PF01795_consen 12 VLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLD--EYL---- 85 (310)
T ss_dssp HHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHH--HHH----
T ss_pred HHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHH--HHH----
Confidence 34566789999999999999999999999877 89999999999999999999877666899999988764 111
Q ss_pred cccccccccc-CCCCCCEEEEccCCccc
Q psy15212 203 KKTNNRFRFY-KNKYFDRILADLPCTGS 229 (329)
Q Consensus 203 ~~~~~~~~~~-~~~~fD~Vl~D~PCsg~ 229 (329)
... ....+|.||+|-=+|+.
T Consensus 86 -------~~~~~~~~~dgiL~DLGvSS~ 106 (310)
T PF01795_consen 86 -------KELNGINKVDGILFDLGVSSM 106 (310)
T ss_dssp -------HHTTTTS-EEEEEEE-S--HH
T ss_pred -------HHccCCCccCEEEEccccCHH
Confidence 011 23589999999888765
No 206
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.29 E-value=4e-06 Score=73.47 Aligned_cols=72 Identities=15% Similarity=0.187 Sum_probs=53.4
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
.++++|||+|||+|..+..+++..+..++++|+++.+++.+++ .+ ++++.+|+.... .
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~----~~--~~~~~~d~~~~l----------------~ 69 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA----RG--VNVIQGDLDEGL----------------E 69 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH----cC--CeEEEEEhhhcc----------------c
Confidence 4678999999999999988887655688999999999888754 23 456677765421 0
Q ss_pred ccCCCCCCEEEEcc
Q psy15212 211 FYKNKYFDRILADL 224 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~ 224 (329)
.+.+++||.|++..
T Consensus 70 ~~~~~sfD~Vi~~~ 83 (194)
T TIGR02081 70 AFPDKSFDYVILSQ 83 (194)
T ss_pred ccCCCCcCEEEEhh
Confidence 12356899999754
No 207
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.27 E-value=4.9e-06 Score=75.38 Aligned_cols=172 Identities=17% Similarity=0.183 Sum_probs=101.1
Q ss_pred CCcHHHHHHHHHhCCChHHHHHHHHHhCCCCCeeEEEcCCCCCHHHHHHHHH-HCCCeeEEeCCceEEEcCCCCCCCCcc
Q psy15212 30 NYPIWWINQVKITYPNFFQWKNILDVGHKKPPLTLRINQRKTTLISYNKLLK-KSGLETTIIGPLAIKLHTPISISKIPK 108 (329)
Q Consensus 30 s~P~w~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~RvN~~k~~~~~~~~~l~-~~g~~~~~~~~~~~~~~~~~~~~~~~~ 108 (329)
++|+.+...+.....+ +++.++|....+.... +..+..+.-...++..+- ...+ +|+
T Consensus 7 eL~~~l~~~Fvql~~D-~ET~~FL~~S~e~S~~-~~~ql~~~l~~~~L~~f~S~T~i-------NG~------------- 64 (265)
T PF05219_consen 7 ELPEELQSKFVQLSPD-EETQEFLDRSYEKSDW-FFTQLWHSLASSILSWFMSKTDI-------NGI------------- 64 (265)
T ss_pred cCCHHHHHHHhhcCCC-HHHHHHHHHhHHhHHH-HHHHHHHHHHHHHHHHHHhHHhH-------hhh-------------
Confidence 3899999999998876 8899999876654332 111111111111222111 1000 111
Q ss_pred cccceEEEechhHHHHhhhcCCC--------CCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCC
Q psy15212 109 FFNGFCSIQDAAAQLAAPLLDIR--------SGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180 (329)
Q Consensus 109 ~~~G~~~~Qd~~s~l~~~~l~~~--------~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~ 180 (329)
...|.+++=.. +-...+|... ...++||+|||-|+.|..++.... +|+|-|.|+.|..+ +++.|.
T Consensus 65 LgRG~MFvfS~--~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~-~v~aTE~S~~Mr~r----L~~kg~ 137 (265)
T PF05219_consen 65 LGRGSMFVFSE--EQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFK-EVYATEASPPMRWR----LSKKGF 137 (265)
T ss_pred hcCCcEEEecH--HHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcc-eEEeecCCHHHHHH----HHhCCC
Confidence 01233333211 1122222211 356899999999999999998776 99999999998655 445565
Q ss_pred ceEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHH
Q psy15212 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNN 260 (329)
Q Consensus 181 ~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~ 260 (329)
. ++..| +.. ..+.+||+|-| ..++.|.-+ ...+|+.
T Consensus 138 ~--vl~~~--~w~------------------~~~~~fDvIsc------LNvLDRc~~----------------P~~LL~~ 173 (265)
T PF05219_consen 138 T--VLDID--DWQ------------------QTDFKFDVISC------LNVLDRCDR----------------PLTLLRD 173 (265)
T ss_pred e--EEehh--hhh------------------ccCCceEEEee------hhhhhccCC----------------HHHHHHH
Confidence 4 22222 222 12357999964 344444321 3568999
Q ss_pred HHhcCCCCCEEEEE
Q psy15212 261 LWKMLKPGGKLLFV 274 (329)
Q Consensus 261 a~~~LkpgG~lvys 274 (329)
+.+.|+|+|+++.+
T Consensus 174 i~~~l~p~G~lilA 187 (265)
T PF05219_consen 174 IRRALKPNGRLILA 187 (265)
T ss_pred HHHHhCCCCEEEEE
Confidence 99999999999987
No 208
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.27 E-value=6.6e-06 Score=73.87 Aligned_cols=112 Identities=12% Similarity=0.066 Sum_probs=77.6
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHH------------HH-cCCceEEEecCccccchhh
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENL------------KR-LNLKATLILSDISKINLKK 196 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~------------~~-~g~~v~~~~~D~~~~~~~~ 196 (329)
+.+|.+||+.+||.|.-...+|+. |-.|+|+|+|+..++.+.+.. .+ .+..++++++|+..++..
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~~-G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~- 118 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLSK-GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKI- 118 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHhC-CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcc-
Confidence 446789999999999999999985 458999999999999875521 11 134589999999886400
Q ss_pred hhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH-HHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 197 LYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL-SKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l-~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
. ...+.||.|. |-- -+..+ ..+..+..++..++|+|||+++..|
T Consensus 119 -------------~-~~~~~fD~Vy-Dra--------------------~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 119 -------------A-NNLPVFDIWY-DRG--------------------AYIALPNDLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred -------------c-cccCCcCeee-eeh--------------------hHhcCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 0 0125799986 110 11111 1233457888889999999988876
Q ss_pred CCC
Q psy15212 276 CSL 278 (329)
Q Consensus 276 CS~ 278 (329)
-..
T Consensus 164 ~~~ 166 (226)
T PRK13256 164 MEH 166 (226)
T ss_pred Eec
Confidence 543
No 209
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.26 E-value=9.3e-06 Score=70.76 Aligned_cols=97 Identities=24% Similarity=0.273 Sum_probs=76.9
Q ss_pred eEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhccccccccccc
Q psy15212 135 YVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNRFRFY 212 (329)
Q Consensus 135 ~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~ 212 (329)
+++|+|+|.|-=++.+|-..+ .+++.+|.+.+++.-+++-...+|++ +++++.++.+..
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~------------------- 111 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPE------------------- 111 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTT-------------------
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccc-------------------
Confidence 899999999999999988777 79999999999999999999999998 999999887722
Q ss_pred CCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 213 KNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 213 ~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
....||.|++=|=.+ ...+++-+..++++||+++.---
T Consensus 112 ~~~~fd~v~aRAv~~--------------------------l~~l~~~~~~~l~~~G~~l~~KG 149 (184)
T PF02527_consen 112 YRESFDVVTARAVAP--------------------------LDKLLELARPLLKPGGRLLAYKG 149 (184)
T ss_dssp TTT-EEEEEEESSSS--------------------------HHHHHHHHGGGEEEEEEEEEEES
T ss_pred cCCCccEEEeehhcC--------------------------HHHHHHHHHHhcCCCCEEEEEcC
Confidence 347899998533211 23578889999999998876533
No 210
>KOG1499|consensus
Probab=98.25 E-value=6.7e-06 Score=77.18 Aligned_cols=111 Identities=19% Similarity=0.229 Sum_probs=81.4
Q ss_pred CCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhcccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
.+..|||+|||+|..+...|+....+|+|+|-|.-. +.+++.+..+++. ++++.+.+.+..
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~---------------- 122 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIE---------------- 122 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEe----------------
Confidence 578999999999999999998665899999976655 9999999999997 789888888765
Q ss_pred cccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCc
Q psy15212 210 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWF 280 (329)
Q Consensus 210 ~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~ 280 (329)
++.++.|+|+.. |. ....-+..+....|-+==+.|+|||.++=++|+++-
T Consensus 123 --LP~eKVDiIvSE----------------WM---Gy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a~l~l 172 (346)
T KOG1499|consen 123 --LPVEKVDIIVSE----------------WM---GYFLLYESMLDSVLYARDKWLKEGGLIYPDRATLYL 172 (346)
T ss_pred --cCccceeEEeeh----------------hh---hHHHHHhhhhhhhhhhhhhccCCCceEccccceEEE
Confidence 234789999831 21 111111122233333334789999999888888663
No 211
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.19 E-value=6.1e-05 Score=69.30 Aligned_cols=127 Identities=20% Similarity=0.199 Sum_probs=95.8
Q ss_pred CCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhcccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
.-+|||+|||+|.--+-+.+..+ ..|.-.|.++.-++..++.++..|+. +++.++|+.+..
T Consensus 136 pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~-------------- 201 (311)
T PF12147_consen 136 PVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRD-------------- 201 (311)
T ss_pred ceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHh--------------
Confidence 45899999999998887776655 58999999999999999999999997 499999998754
Q ss_pred ccccc-CCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHH
Q psy15212 208 RFRFY-KNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQ 286 (329)
Q Consensus 208 ~~~~~-~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~v 286 (329)
.+. .....+++++ +|+..--|| .+ +-.+.|......+.|||+|||..=-+||+ -+.
T Consensus 202 --~l~~l~p~P~l~iV------sGL~ElF~D-------n~------lv~~sl~gl~~al~pgG~lIyTgQPwHPQ--le~ 258 (311)
T PF12147_consen 202 --SLAALDPAPTLAIV------SGLYELFPD-------ND------LVRRSLAGLARALEPGGYLIYTGQPWHPQ--LEM 258 (311)
T ss_pred --HhhccCCCCCEEEE------ecchhhCCc-------HH------HHHHHHHHHHHHhCCCcEEEEcCCCCCcc--hHH
Confidence 110 1235688875 444322222 11 23345777888899999999988788884 456
Q ss_pred HHHHHhhCCC
Q psy15212 287 AIIFSKNHKD 296 (329)
Q Consensus 287 v~~~l~~~~~ 296 (329)
|+..|..|.+
T Consensus 259 IAr~LtsHr~ 268 (311)
T PF12147_consen 259 IARVLTSHRD 268 (311)
T ss_pred HHHHHhcccC
Confidence 8999998853
No 212
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.18 E-value=5.7e-06 Score=71.41 Aligned_cols=114 Identities=21% Similarity=0.259 Sum_probs=66.7
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcC--Cc--eEEEecCccccchhhhhhhhccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLN--LK--ATLILSDISKINLKKLYIDINKK 204 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g--~~--v~~~~~D~~~~~~~~~~~~~~~~ 204 (329)
...|.+||++|||.|--++.++.+.+ .+|++-|.++ .++.++.|++.++ .. +.+...|=.+....
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~--------- 112 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDS--------- 112 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHH---------
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccc---------
Confidence 34678999999999999999998734 7999999999 9999999999887 22 55555443221100
Q ss_pred ccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCcc
Q psy15212 205 TNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFE 281 (329)
Q Consensus 205 ~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~ 281 (329)
.......||+||. + |+-|. . .....+++...++++++|.++.+ +.....
T Consensus 113 -----~~~~~~~~D~Ila------s-------Dv~Y~--~-------~~~~~L~~tl~~ll~~~~~vl~~-~~~R~~ 161 (173)
T PF10294_consen 113 -----DLLEPHSFDVILA------S-------DVLYD--E-------ELFEPLVRTLKRLLKPNGKVLLA-YKRRRK 161 (173)
T ss_dssp -----HHHS-SSBSEEEE------E-------S--S---G-------GGHHHHHHHHHHHBTT-TTEEEE-EE-S-T
T ss_pred -----cccccccCCEEEE------e-------cccch--H-------HHHHHHHHHHHHHhCCCCEEEEE-eCEecH
Confidence 1123468999984 1 22221 1 22345677777789999984444 444433
No 213
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=98.12 E-value=4.1e-06 Score=80.87 Aligned_cols=101 Identities=25% Similarity=0.260 Sum_probs=73.9
Q ss_pred CCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc---eEEEecCccccchhhhhhhhcccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK---ATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~---v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
+-+|||.-||+|.-++..+...+ .+|+++|+|+..++.++.|++.+++. +++.+.|+..+-
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll-------------- 115 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLL-------------- 115 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHH--------------
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHh--------------
Confidence 34899999999999999998744 69999999999999999999999986 478888887642
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
. .....||+|=+||==| -..+|+.|++.++.|| +++.|||
T Consensus 116 --~-~~~~~fD~IDlDPfGS--------------------------p~pfldsA~~~v~~gG-ll~vTaT 155 (377)
T PF02005_consen 116 --Y-SRQERFDVIDLDPFGS--------------------------PAPFLDSALQAVKDGG-LLCVTAT 155 (377)
T ss_dssp --C-HSTT-EEEEEE--SS----------------------------HHHHHHHHHHEEEEE-EEEEEE-
T ss_pred --h-hccccCCEEEeCCCCC--------------------------ccHhHHHHHHHhhcCC-EEEEecc
Confidence 0 1357899999998422 2358999999999998 4556666
No 214
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.12 E-value=8.5e-05 Score=68.95 Aligned_cols=117 Identities=17% Similarity=0.172 Sum_probs=86.8
Q ss_pred hhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcC----Cc-eEEEecCccccchhhhh
Q psy15212 125 APLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLN----LK-ATLILSDISKINLKKLY 198 (329)
Q Consensus 125 ~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g----~~-v~~~~~D~~~~~~~~~~ 198 (329)
+.+..+.+ .+||=+|-|.|+.+-.+++..+ .+++.||+++..++.+++-+.... -+ ++++..|+.++-
T Consensus 70 ~~~ah~~p-k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v----- 143 (282)
T COG0421 70 PLLAHPNP-KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFL----- 143 (282)
T ss_pred hhhhCCCC-CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHH-----
Confidence 33344666 5999999999999999998876 799999999999999999887654 12 789999998864
Q ss_pred hhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 199 IDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
.. ...+||+|++|---- .|. . +.. ...++.+.+.+.|+++|.++.-+-|
T Consensus 144 -----------~~-~~~~fDvIi~D~tdp-~gp---~-~~L-------------ft~eFy~~~~~~L~~~Gi~v~q~~~ 192 (282)
T COG0421 144 -----------RD-CEEKFDVIIVDSTDP-VGP---A-EAL-------------FTEEFYEGCRRALKEDGIFVAQAGS 192 (282)
T ss_pred -----------Hh-CCCcCCEEEEcCCCC-CCc---c-ccc-------------CCHHHHHHHHHhcCCCcEEEEecCC
Confidence 11 234899999985311 011 0 001 2356889999999999999887544
No 215
>KOG0820|consensus
Probab=98.10 E-value=1.4e-05 Score=72.44 Aligned_cols=124 Identities=16% Similarity=0.247 Sum_probs=89.6
Q ss_pred hhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhc
Q psy15212 125 APLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDIN 202 (329)
Q Consensus 125 ~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~ 202 (329)
+...+.++++.||++|-|||..|..|.+... +|+|+|+++.++..++++.+-.-.. .+++++|+.+.+
T Consensus 51 ~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d--------- 120 (315)
T KOG0820|consen 51 VEKADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD--------- 120 (315)
T ss_pred HhccCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC---------
Confidence 3344688999999999999999999998654 9999999999999999999866543 789999998865
Q ss_pred ccccccccccCCCCCCEEEEccCC--cccccccc--CCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCC
Q psy15212 203 KKTNNRFRFYKNKYFDRILADLPC--TGSGVVRR--NPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSL 278 (329)
Q Consensus 203 ~~~~~~~~~~~~~~fD~Vl~D~PC--sg~G~~~~--~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~ 278 (329)
...||.++.+-|+ |+.+++.- ++.+.|. ...-+|+++ |.+++..-|-..|+--|+
T Consensus 121 -----------~P~fd~cVsNlPyqISSp~vfKLL~~~~~fr~-------AvlmfQ~Ef---a~RLva~pgd~~Ycrlsi 179 (315)
T KOG0820|consen 121 -----------LPRFDGCVSNLPYQISSPLVFKLLLHRPVFRC-------AVLMFQREF---ALRLVARPGDSLYCRLSI 179 (315)
T ss_pred -----------CcccceeeccCCccccCHHHHHhcCCCCCcce-------eeeehhhhh---hhhhccCCCCchhceeeh
Confidence 2479999999997 55555432 3333321 112245544 555666667777754444
Q ss_pred C
Q psy15212 279 W 279 (329)
Q Consensus 279 ~ 279 (329)
.
T Consensus 180 n 180 (315)
T KOG0820|consen 180 N 180 (315)
T ss_pred h
Confidence 3
No 216
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.07 E-value=2.2e-05 Score=66.33 Aligned_cols=116 Identities=22% Similarity=0.269 Sum_probs=85.7
Q ss_pred hhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhc
Q psy15212 125 APLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDIN 202 (329)
Q Consensus 125 ~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~ 202 (329)
+...++..|--||++|.|+|-+|-.+.+++- ..++++|.|++-...+.+.... ++++++|+..+.- ++
T Consensus 41 ~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~----~~ii~gda~~l~~---~l--- 110 (194)
T COG3963 41 ASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPG----VNIINGDAFDLRT---TL--- 110 (194)
T ss_pred HhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCC----ccccccchhhHHH---HH---
Confidence 3344688898999999999999999998754 6999999999999887765432 5688999877540 00
Q ss_pred ccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 203 KKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 203 ~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
....+..||.|++-.|--+.- . ..-.++|+.+...|.+||.+|--|-+
T Consensus 111 -------~e~~gq~~D~viS~lPll~~P-------------~-------~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 111 -------GEHKGQFFDSVISGLPLLNFP-------------M-------HRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred -------hhcCCCeeeeEEeccccccCc-------------H-------HHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 123567899999877732111 0 12346899999999999999876655
No 217
>KOG1099|consensus
Probab=98.06 E-value=1.1e-05 Score=71.50 Aligned_cols=116 Identities=19% Similarity=0.289 Sum_probs=75.0
Q ss_pred CeEEeecCCCchHHHHHHHhCC----------CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhc
Q psy15212 134 MYVLDACSAPGGKTCHLLEIAD----------IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDIN 202 (329)
Q Consensus 134 ~~VLDlcag~G~kt~~la~~~~----------~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~ 202 (329)
.+|+|+||+||+++-.+++.+- .+|+|||+.+-. -++ |..+.+|.+...-.
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI~GV~qlq~DIT~~sta------- 104 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PIEGVIQLQGDITSASTA------- 104 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------ccCceEEeecccCCHhHH-------
Confidence 5899999999999999987642 249999985421 234 66778898875410
Q ss_pred ccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHH----HHhcCCCCCEEEEEcCCC
Q psy15212 203 KKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNN----LWKMLKPGGKLLFVTCSL 278 (329)
Q Consensus 203 ~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~----a~~~LkpgG~lvysTCS~ 278 (329)
..-+..+.+++.|.|+||-.---+|+ .++.++. |.++|.. +...|||||.+| --+
T Consensus 105 ---e~Ii~hfggekAdlVvcDGAPDvTGl-------------Hd~DEy~--Q~qLllaAl~i~t~Vlk~Gg~FV---aKi 163 (294)
T KOG1099|consen 105 ---EAIIEHFGGEKADLVVCDGAPDVTGL-------------HDLDEYV--QAQLLLAALNIATCVLKPGGSFV---AKI 163 (294)
T ss_pred ---HHHHHHhCCCCccEEEeCCCCCcccc-------------ccHHHHH--HHHHHHHHHHHHhheecCCCeee---hhh
Confidence 00112345679999999965333333 3455554 4444544 457899999998 356
Q ss_pred CccccHHHHH
Q psy15212 279 WFEESEEQAI 288 (329)
Q Consensus 279 ~~~Ene~vv~ 288 (329)
+..++-..+.
T Consensus 164 fRg~~tslLy 173 (294)
T KOG1099|consen 164 FRGRDTSLLY 173 (294)
T ss_pred hccCchHHHH
Confidence 6666655443
No 218
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.97 E-value=7.9e-05 Score=67.46 Aligned_cols=114 Identities=20% Similarity=0.168 Sum_probs=80.4
Q ss_pred hhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcc
Q psy15212 125 APLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINK 203 (329)
Q Consensus 125 ~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~ 203 (329)
....+..+..+|+|+|.|.|..+..+++..+ .+++..|. +..++.+++ .-.++++.+|+....
T Consensus 93 ~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-----~~rv~~~~gd~f~~~---------- 156 (241)
T PF00891_consen 93 LEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-----ADRVEFVPGDFFDPL---------- 156 (241)
T ss_dssp HHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-----TTTEEEEES-TTTCC----------
T ss_pred hccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-----ccccccccccHHhhh----------
Confidence 3445566677999999999999999999988 79999998 777777777 223899999988321
Q ss_pred cccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCC--CEEEEEcCCCCcc
Q psy15212 204 KTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPG--GKLLFVTCSLWFE 281 (329)
Q Consensus 204 ~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~Lkpg--G~lvysTCS~~~~ 281 (329)
+. +|+|++- . +...|+.++. ..||+++.+.|+|| |+|+....-+...
T Consensus 157 ----------P~-~D~~~l~------~-------vLh~~~d~~~-------~~iL~~~~~al~pg~~g~llI~e~~~~~~ 205 (241)
T PF00891_consen 157 ----------PV-ADVYLLR------H-------VLHDWSDEDC-------VKILRNAAAALKPGKDGRLLIIEMVLPDD 205 (241)
T ss_dssp ----------SS-ESEEEEE------S-------SGGGS-HHHH-------HHHHHHHHHHSEECTTEEEEEEEEEECSS
T ss_pred ----------cc-ccceeee------h-------hhhhcchHHH-------HHHHHHHHHHhCCCCCCeEEEEeeccCCC
Confidence 23 9999861 1 1223444443 56899999999999 9999887655444
Q ss_pred ccHH
Q psy15212 282 ESEE 285 (329)
Q Consensus 282 Ene~ 285 (329)
..+.
T Consensus 206 ~~~~ 209 (241)
T PF00891_consen 206 RTGP 209 (241)
T ss_dssp SSSH
T ss_pred CCCc
Confidence 4333
No 219
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.97 E-value=0.00016 Score=64.38 Aligned_cols=95 Identities=20% Similarity=0.248 Sum_probs=76.9
Q ss_pred CCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhccccccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
+.+|+|+|+|.|-=++.+|-..+ .+|+-+|...+|+.-++.-.+.+|++ ++++++.+.++.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~----------------- 130 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFG----------------- 130 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcc-----------------
Confidence 57999999999999999885455 67999999999999999999999998 999999888765
Q ss_pred ccCCCC-CCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEE
Q psy15212 211 FYKNKY-FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLL 272 (329)
Q Consensus 211 ~~~~~~-fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lv 272 (329)
.... ||.|.+=|=++ -..+.+-+..++|+||.++
T Consensus 131 --~~~~~~D~vtsRAva~--------------------------L~~l~e~~~pllk~~g~~~ 165 (215)
T COG0357 131 --QEKKQYDVVTSRAVAS--------------------------LNVLLELCLPLLKVGGGFL 165 (215)
T ss_pred --cccccCcEEEeehccc--------------------------hHHHHHHHHHhcccCCcch
Confidence 1223 99998533222 1346777889999988765
No 220
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.94 E-value=4.2e-05 Score=68.88 Aligned_cols=40 Identities=28% Similarity=0.264 Sum_probs=34.5
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHH
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNM 170 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~ 170 (329)
.+|..|||+|||||++|..+++....+|+|+|+++.++..
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 3678999999999999999998633699999999987764
No 221
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=97.94 E-value=3.8e-05 Score=65.32 Aligned_cols=79 Identities=15% Similarity=0.299 Sum_probs=57.8
Q ss_pred EEEeCChhHHHHHHHHHHHcC---C-ceEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCcccccccc
Q psy15212 159 ISVDNNLSRLNMISENLKRLN---L-KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRR 234 (329)
Q Consensus 159 ~avD~~~~rl~~l~~n~~~~g---~-~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~ 234 (329)
+|+|+|+.+++.++++.+..+ . .++++.+|+.+++ +.++.||.|++. .+. +.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp------------------~~~~~fD~v~~~-----~~l-~~ 56 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLP------------------FDDCEFDAVTMG-----YGL-RN 56 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCC------------------CCCCCeeEEEec-----chh-hc
Confidence 489999999999988765432 2 3789999998876 356789999852 111 11
Q ss_pred CCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 235 NPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 235 ~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
-+ -..+.|+++.+.|||||+++....+
T Consensus 57 ~~----------------d~~~~l~ei~rvLkpGG~l~i~d~~ 83 (160)
T PLN02232 57 VV----------------DRLRAMKEMYRVLKPGSRVSILDFN 83 (160)
T ss_pred CC----------------CHHHHHHHHHHHcCcCeEEEEEECC
Confidence 11 1356899999999999999887655
No 222
>KOG1500|consensus
Probab=97.94 E-value=7e-05 Score=69.82 Aligned_cols=114 Identities=21% Similarity=0.193 Sum_probs=78.6
Q ss_pred CCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhcccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
.|..|||+|||+|..+..+|+....+|+|+|- .++.+.++..++.+.+. +.++.+...++.
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEA-S~MAqyA~~Lv~~N~~~~rItVI~GKiEdie---------------- 239 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEA-SEMAQYARKLVASNNLADRITVIPGKIEDIE---------------- 239 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEeh-hHHHHHHHHHHhcCCccceEEEccCcccccc----------------
Confidence 36789999999999999888765589999995 46888889888888774 778888777665
Q ss_pred cccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC--CCccccHH
Q psy15212 210 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS--LWFEESEE 285 (329)
Q Consensus 210 ~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS--~~~~Ene~ 285 (329)
.+++.|+||..| +|.+ ..++.. .+---+|.++|||.|.++=..-- +.|--+|.
T Consensus 240 ---LPEk~DviISEP----MG~m--------L~NERM--------LEsYl~Ark~l~P~GkMfPT~gdiHlAPFsDE~ 294 (517)
T KOG1500|consen 240 ---LPEKVDVIISEP----MGYM--------LVNERM--------LESYLHARKWLKPNGKMFPTVGDIHLAPFSDEQ 294 (517)
T ss_pred ---CchhccEEEecc----chhh--------hhhHHH--------HHHHHHHHhhcCCCCcccCcccceeecccchHH
Confidence 357899999765 2332 111111 11223566999999988633322 23444444
No 223
>KOG3010|consensus
Probab=97.93 E-value=4.4e-05 Score=68.25 Aligned_cols=105 Identities=13% Similarity=0.184 Sum_probs=65.7
Q ss_pred HHhhhcCCCCCC-eEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhh
Q psy15212 123 LAAPLLDIRSGM-YVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYI 199 (329)
Q Consensus 123 l~~~~l~~~~g~-~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~ 199 (329)
+...+....++. .++|+|||+|-.+..+|+... +|+|+|+|+.+|+.++......-.. ..+...+...+.
T Consensus 23 w~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~k-~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~------ 95 (261)
T KOG3010|consen 23 WFKKIASRTEGHRLAWDVGTGNGQAARGIAEHYK-EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLL------ 95 (261)
T ss_pred HHHHHHhhCCCcceEEEeccCCCcchHHHHHhhh-hheeecCCHHHHHHhhcCCCcccccCCcccccccccccc------
Confidence 333344455555 799999999966666676655 9999999999999777654322221 333333333322
Q ss_pred hhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCC
Q psy15212 200 DINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 269 (329)
Q Consensus 200 ~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG 269 (329)
-.+++.|.|++ +-|- +|- --.++.+.+.+.||+.|
T Consensus 96 ------------g~e~SVDlI~~-Aqa~-----------HWF-----------dle~fy~~~~rvLRk~G 130 (261)
T KOG3010|consen 96 ------------GGEESVDLITA-AQAV-----------HWF-----------DLERFYKEAYRVLRKDG 130 (261)
T ss_pred ------------CCCcceeeehh-hhhH-----------Hhh-----------chHHHHHHHHHHcCCCC
Confidence 12578999985 1111 221 12357788899999876
No 224
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=97.91 E-value=0.00031 Score=70.65 Aligned_cols=147 Identities=13% Similarity=0.117 Sum_probs=92.0
Q ss_pred cceEEEechhHHHHhhhcCCC--CCCeEEeecCCCchHHHHHHHhCC-----CEEEEEeCChhHHHHHHHHHHHcCCc--
Q psy15212 111 NGFCSIQDAAAQLAAPLLDIR--SGMYVLDACSAPGGKTCHLLEIAD-----IKLISVDNNLSRLNMISENLKRLNLK-- 181 (329)
Q Consensus 111 ~G~~~~Qd~~s~l~~~~l~~~--~g~~VLDlcag~G~kt~~la~~~~-----~~v~avD~~~~rl~~l~~n~~~~g~~-- 181 (329)
.|.++.-..-+.+.+.++.+. |++.|.|+|||+|+.........+ ..+++.+....+...++.|+.-.+..
T Consensus 194 ~g~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~ 273 (501)
T TIGR00497 194 GGEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYA 273 (501)
T ss_pred CceeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCcc
Confidence 466777666677777777764 678999999999998876554332 47899999999999999998766653
Q ss_pred -eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccc---cccccCCCCcccCChhHHHHHHHHHHHH
Q psy15212 182 -ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGS---GVVRRNPDIPWLRRKNDIKKLSKYSCKI 257 (329)
Q Consensus 182 -v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~---G~~~~~p~~~~~~~~~~~~~l~~~q~~l 257 (329)
.....+|..... .+....+||.|+.|||.+.. |.+....+..+.+....+..+.......
T Consensus 274 t~~~~~~dtl~~~----------------d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~af 337 (501)
T TIGR00497 274 NFNIINADTLTTK----------------EWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAF 337 (501)
T ss_pred ccCcccCCcCCCc----------------cccccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHH
Confidence 223334432211 11223579999999999853 1111000111111000011223345678
Q ss_pred HHHHHhcCCCCCEEEE
Q psy15212 258 LNNLWKMLKPGGKLLF 273 (329)
Q Consensus 258 L~~a~~~LkpgG~lvy 273 (329)
+.++...|++||+...
T Consensus 338 i~h~~~~L~~gG~~ai 353 (501)
T TIGR00497 338 VLHALYVLGQEGTAAI 353 (501)
T ss_pred HHHHHHhcCCCCeEEE
Confidence 8889999999997443
No 225
>KOG1975|consensus
Probab=97.90 E-value=4.8e-05 Score=70.65 Aligned_cols=136 Identities=20% Similarity=0.228 Sum_probs=87.4
Q ss_pred HHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcC-------CceEEEecCccccc
Q psy15212 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLN-------LKATLILSDISKIN 193 (329)
Q Consensus 121 s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g-------~~v~~~~~D~~~~~ 193 (329)
|+|+-... ++++.++|||||-||=.+-.-...=+.++++||.+-.++.++.+.+.+. ..+.++.+|...-.
T Consensus 108 s~LI~~y~--~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~ 185 (389)
T KOG1975|consen 108 SVLINLYT--KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKER 185 (389)
T ss_pred HHHHHHHh--ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhH
Confidence 56665554 5789999999999998877664322799999999999998888765432 23678888877643
Q ss_pred hhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEE
Q psy15212 194 LKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 273 (329)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvy 273 (329)
+.. +++ ..+.+||+|=|--.| +|.+..+. .-+.+|.++++.|+|||+++=
T Consensus 186 l~d-----------~~e-~~dp~fDivScQF~~------------HYaFetee------~ar~~l~Nva~~LkpGG~FIg 235 (389)
T KOG1975|consen 186 LMD-----------LLE-FKDPRFDIVSCQFAF------------HYAFETEE------SARIALRNVAKCLKPGGVFIG 235 (389)
T ss_pred HHH-----------hcc-CCCCCcceeeeeeeE------------eeeeccHH------HHHHHHHHHHhhcCCCcEEEE
Confidence 211 111 123349988542221 22222211 124579999999999998874
Q ss_pred EcCCCCccccHHHHHHHHhhC
Q psy15212 274 VTCSLWFEESEEQAIIFSKNH 294 (329)
Q Consensus 274 sTCS~~~~Ene~vv~~~l~~~ 294 (329)
. -.|-++|-+=|+..
T Consensus 236 T------iPdsd~Ii~rlr~~ 250 (389)
T KOG1975|consen 236 T------IPDSDVIIKRLRAG 250 (389)
T ss_pred e------cCcHHHHHHHHHhc
Confidence 2 23555665555543
No 226
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.88 E-value=1e-05 Score=72.48 Aligned_cols=110 Identities=23% Similarity=0.243 Sum_probs=72.6
Q ss_pred CCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHH-c-----------CC-ceEEEecCccccchh
Q psy15212 129 DIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKR-L-----------NL-KATLILSDISKINLK 195 (329)
Q Consensus 129 ~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~-~-----------g~-~v~~~~~D~~~~~~~ 195 (329)
...++.+||+.|||.|.-...+|+. |-.|+|+|+|+..++.+.+.... . .. .++++++|+..+.
T Consensus 34 ~~~~~~rvLvPgCG~g~D~~~La~~-G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~-- 110 (218)
T PF05724_consen 34 ALKPGGRVLVPGCGKGYDMLWLAEQ-GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELP-- 110 (218)
T ss_dssp TTSTSEEEEETTTTTSCHHHHHHHT-TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGG--
T ss_pred CCCCCCeEEEeCCCChHHHHHHHHC-CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCC--
Confidence 4567789999999999999999986 45999999999999987332111 1 11 1578899998865
Q ss_pred hhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 196 KLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
.. ..++||.|. | |+..-.+ +|+ ...+..++..++|+|||++++.|
T Consensus 111 --------------~~-~~g~fD~iy-D--r~~l~Al--pp~---------------~R~~Ya~~l~~ll~p~g~~lLi~ 155 (218)
T PF05724_consen 111 --------------PE-DVGKFDLIY-D--RTFLCAL--PPE---------------MRERYAQQLASLLKPGGRGLLIT 155 (218)
T ss_dssp --------------GS-CHHSEEEEE-E--CSSTTTS---GG---------------GHHHHHHHHHHCEEEEEEEEEEE
T ss_pred --------------hh-hcCCceEEE-E--ecccccC--CHH---------------HHHHHHHHHHHHhCCCCcEEEEE
Confidence 11 124799996 2 1111111 122 12346777888999999966655
Q ss_pred C
Q psy15212 276 C 276 (329)
Q Consensus 276 C 276 (329)
-
T Consensus 156 l 156 (218)
T PF05724_consen 156 L 156 (218)
T ss_dssp E
T ss_pred E
Confidence 3
No 227
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.87 E-value=0.00021 Score=63.32 Aligned_cols=118 Identities=20% Similarity=0.164 Sum_probs=85.1
Q ss_pred EEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhccccccccccc
Q psy15212 136 VLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNNRFRFY 212 (329)
Q Consensus 136 VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~ 212 (329)
|.|+||-=|.....|++... .+++|+|+++.-++.++++++++|+. +++..+|....- .
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l------------------~ 62 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVL------------------K 62 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--------------------
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccccc------------------C
Confidence 68999999999999998655 58999999999999999999999986 899999977642 1
Q ss_pred CCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHHHHHh
Q psy15212 213 KNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSK 292 (329)
Q Consensus 213 ~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~~l~ 292 (329)
+.+..|.|+. .|+|- .+..+||++....++...+||. .|..+...+..+|.
T Consensus 63 ~~e~~d~ivI----AGMGG--------------------~lI~~ILe~~~~~~~~~~~lIL-----qP~~~~~~LR~~L~ 113 (205)
T PF04816_consen 63 PGEDVDTIVI----AGMGG--------------------ELIIEILEAGPEKLSSAKRLIL-----QPNTHAYELRRWLY 113 (205)
T ss_dssp GGG---EEEE----EEE-H--------------------HHHHHHHHHTGGGGTT--EEEE-----EESS-HHHHHHHHH
T ss_pred CCCCCCEEEE----ecCCH--------------------HHHHHHHHhhHHHhccCCeEEE-----eCCCChHHHHHHHH
Confidence 2233677774 45553 2356789998888877778886 46678888999998
Q ss_pred hCCCcEEec
Q psy15212 293 NHKDSIRLN 301 (329)
Q Consensus 293 ~~~~~~~~~ 301 (329)
.+ +|.++.
T Consensus 114 ~~-gf~I~~ 121 (205)
T PF04816_consen 114 EN-GFEIID 121 (205)
T ss_dssp HT-TEEEEE
T ss_pred HC-CCEEEE
Confidence 87 666543
No 228
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.86 E-value=7.6e-05 Score=70.48 Aligned_cols=167 Identities=18% Similarity=0.176 Sum_probs=94.8
Q ss_pred HHHHHHhCCChHHHHHHHHHhCC--CCCeeEEEcCCCCCHH-H-----------HHHHHHHCCCeeEEe---CC--ceEE
Q psy15212 36 INQVKITYPNFFQWKNILDVGHK--KPPLTLRINQRKTTLI-S-----------YNKLLKKSGLETTII---GP--LAIK 96 (329)
Q Consensus 36 ~~~~~~~~~~~~~~~~~l~~~~~--~~p~~~RvN~~k~~~~-~-----------~~~~l~~~g~~~~~~---~~--~~~~ 96 (329)
+....+.+|..+++..+++++.. +.--.+||-+.-++.. + +.+.|++.|+-...- .| ..+.
T Consensus 73 ~~~~~~~lp~~DRi~pi~~~~~~~~~~~~~l~vE~pDtne~k~l~~fcrkf~~pLr~aL~~~g~l~~~~~~~~p~lh~~f 152 (357)
T PRK11760 73 VGELLKDLPPEDRISPIVAALQGVVPKFGELRVETPDTNEGKELSKFCRKFTVPLRQALRKAGVLTAKENPKRPVLHVFF 152 (357)
T ss_pred hhhHhhcCCcccchHHHHHHHhhcccccceeEEecCCCccchHHHHHHHHhHHHHHHHHHhCCccCCccCCCCcEEEEEE
Confidence 45555667765678888888863 3335677776644322 1 334566766543211 01 1111
Q ss_pred EcCC------CCCCCCcccccceEEEech---hHHHHhhhc--------------CCCCCCeEEeecCCCchHHHHHHHh
Q psy15212 97 LHTP------ISISKIPKFFNGFCSIQDA---AAQLAAPLL--------------DIRSGMYVLDACSAPGGKTCHLLEI 153 (329)
Q Consensus 97 ~~~~------~~~~~~~~~~~G~~~~Qd~---~s~l~~~~l--------------~~~~g~~VLDlcag~G~kt~~la~~ 153 (329)
+.+. ....++..|-.|-.-+..+ -|.-.-.+. .+.+|.++||+||+|||.|-.++++
T Consensus 153 ~~~~~~~vG~s~~~~~s~~~~Gi~Rl~~p~~apSRs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~r 232 (357)
T PRK11760 153 IAPGCCYVGYSYSNNSSPWPMGIPRLKFPADAPSRSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRR 232 (357)
T ss_pred EeCCEEEEEeccCCCCCcCCCCcccccCCCCCCChHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHc
Confidence 1110 1113344455565544332 232221111 1368999999999999999999986
Q ss_pred CCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCc
Q psy15212 154 ADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCT 227 (329)
Q Consensus 154 ~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCs 227 (329)
+++|+|||..+ +...+... -.|+...+|..... + ..+.+|.|+||.-|.
T Consensus 233 -G~~V~AVD~g~-----l~~~L~~~-~~V~h~~~d~fr~~----------------p--~~~~vDwvVcDmve~ 281 (357)
T PRK11760 233 -GMFVTAVDNGP-----MAQSLMDT-GQVEHLRADGFKFR----------------P--PRKNVDWLVCDMVEK 281 (357)
T ss_pred -CCEEEEEechh-----cCHhhhCC-CCEEEEeccCcccC----------------C--CCCCCCEEEEecccC
Confidence 45999999543 22222221 12677777766543 1 146899999998766
No 229
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.86 E-value=0.0001 Score=65.36 Aligned_cols=117 Identities=18% Similarity=0.195 Sum_probs=67.6
Q ss_pred hhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHH-------HcCCc---eEEEecCccccch
Q psy15212 126 PLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLK-------RLNLK---ATLILSDISKINL 194 (329)
Q Consensus 126 ~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~-------~~g~~---v~~~~~D~~~~~~ 194 (329)
..+++.+++.++|+|||.|...+++|...+ .+.+|+|+.+...+.++.+.+ .+|.. +++..+|+.+.+.
T Consensus 36 ~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~ 115 (205)
T PF08123_consen 36 DELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDF 115 (205)
T ss_dssp HHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHH
T ss_pred HHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHh
Confidence 456788999999999999999999887767 579999999998877665433 34553 6788888876541
Q ss_pred hhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 195 KKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
.. .. -...|+|+++-=|.+. ++ ..-|...+..||+|-++| |
T Consensus 116 ~~-------------~~--~s~AdvVf~Nn~~F~~----------------~l-------~~~L~~~~~~lk~G~~II-s 156 (205)
T PF08123_consen 116 VK-------------DI--WSDADVVFVNNTCFDP----------------DL-------NLALAELLLELKPGARII-S 156 (205)
T ss_dssp HH-------------HH--GHC-SEEEE--TTT-H----------------HH-------HHHHHHHHTTS-TT-EEE-E
T ss_pred Hh-------------hh--hcCCCEEEEeccccCH----------------HH-------HHHHHHHHhcCCCCCEEE-E
Confidence 10 00 1357999998766522 11 112344455678776655 7
Q ss_pred cCCCCcc
Q psy15212 275 TCSLWFE 281 (329)
Q Consensus 275 TCS~~~~ 281 (329)
|-++.+.
T Consensus 157 ~~~~~~~ 163 (205)
T PF08123_consen 157 TKPFCPR 163 (205)
T ss_dssp SS-SS-T
T ss_pred CCCcCCC
Confidence 7666654
No 230
>KOG2361|consensus
Probab=97.85 E-value=5.1e-05 Score=67.85 Aligned_cols=106 Identities=20% Similarity=0.271 Sum_probs=74.8
Q ss_pred eEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccccc
Q psy15212 135 YVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRF 211 (329)
Q Consensus 135 ~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 211 (329)
+||.+|||.|.....+.+-.+ -+|+|+|.|+..++.++++....--.+...+.|++...+. ..
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~--------------~~ 139 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLK--------------EP 139 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhcc--------------CC
Confidence 899999999999999988655 4999999999999999998876554466677777654310 11
Q ss_pred cCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 212 YKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 212 ~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
...+.+|.|.+=---| - ..++ .+...++...++|||||.|++-
T Consensus 140 ~~~~svD~it~IFvLS------A-------i~pe-------k~~~a~~nl~~llKPGG~llfr 182 (264)
T KOG2361|consen 140 PEEGSVDIITLIFVLS------A-------IHPE-------KMQSVIKNLRTLLKPGGSLLFR 182 (264)
T ss_pred CCcCccceEEEEEEEe------c-------cChH-------HHHHHHHHHHHHhCCCcEEEEe
Confidence 2456788765311001 0 0111 2345688899999999999975
No 231
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=97.81 E-value=0.00048 Score=60.69 Aligned_cols=60 Identities=17% Similarity=0.172 Sum_probs=43.8
Q ss_pred chhHHHHhhhcCCCC---CCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHH
Q psy15212 118 DAAAQLAAPLLDIRS---GMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKR 177 (329)
Q Consensus 118 d~~s~l~~~~l~~~~---g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~ 177 (329)
..+|-+.-..+...+ +-.++|.|||.|...+.+.-+-+ ..|+|.|+++..++.++.|+.-
T Consensus 34 RLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~L 99 (246)
T PF11599_consen 34 RLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSL 99 (246)
T ss_dssp HHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhh
Confidence 455666655554332 23799999999999998886554 6999999999999998888763
No 232
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.81 E-value=5.7e-05 Score=71.48 Aligned_cols=101 Identities=24% Similarity=0.248 Sum_probs=81.3
Q ss_pred CCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHc-CCceEEEecCccccchhhhhhhhccccccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRL-NLKATLILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~-g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
..+|+|.-+|+|.-++.+|.-.+ .+|+.+|+|+..++.+++|++.+ +.+..+++.|+..+- .
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm-~--------------- 116 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALL-H--------------- 116 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHH-H---------------
Confidence 56999999999999999998777 49999999999999999999999 445777778876543 1
Q ss_pred ccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 211 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
-....||+|=+||==| ...+++.|++.++.||.|.. |||
T Consensus 117 -~~~~~fd~IDiDPFGS--------------------------PaPFlDaA~~s~~~~G~l~v-TAT 155 (380)
T COG1867 117 -ELHRAFDVIDIDPFGS--------------------------PAPFLDAALRSVRRGGLLCV-TAT 155 (380)
T ss_pred -hcCCCccEEecCCCCC--------------------------CchHHHHHHHHhhcCCEEEE-Eec
Confidence 1236899999998422 23579999999999997765 444
No 233
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.79 E-value=7.5e-06 Score=64.45 Aligned_cols=99 Identities=24% Similarity=0.194 Sum_probs=42.2
Q ss_pred EeecCCCchHHHHHHHhCC----CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhccccccccc
Q psy15212 137 LDACSAPGGKTCHLLEIAD----IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 137 LDlcag~G~kt~~la~~~~----~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
|++|++.|.-|..+++.+. ++++++|..+. .+..++.+++.++. ++++.+|....- +
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l-~--------------- 63 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFL-P--------------- 63 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHH-H---------------
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHH-H---------------
Confidence 5789999999999998765 37999999996 44455555555554 889999986642 1
Q ss_pred ccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 211 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
.+..++||.|++|.+-+.. ....-++.+.+.|+|||.+++-.
T Consensus 64 ~~~~~~~dli~iDg~H~~~-----------------------~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 64 SLPDGPIDLIFIDGDHSYE-----------------------AVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp HHHH--EEEEEEES---HH-----------------------HHHHHHHHHGGGEEEEEEEEEE-
T ss_pred HcCCCCEEEEEECCCCCHH-----------------------HHHHHHHHHHHHcCCCeEEEEeC
Confidence 1124689999999863311 23446888999999999998743
No 234
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.78 E-value=9e-05 Score=68.22 Aligned_cols=90 Identities=23% Similarity=0.284 Sum_probs=69.5
Q ss_pred HHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhh
Q psy15212 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYID 200 (329)
Q Consensus 121 s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~ 200 (329)
..-++..+++.+++.|||+|+|+|..|..+++.. .+++++|+++..++.+++.+. ..-.++++.+|+..+....
T Consensus 19 ~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~-~~~~~~vi~~D~l~~~~~~---- 92 (262)
T PF00398_consen 19 ADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFA-SNPNVEVINGDFLKWDLYD---- 92 (262)
T ss_dssp HHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCT-TCSSEEEEES-TTTSCGGG----
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhh-hcccceeeecchhccccHH----
Confidence 3444556678899999999999999999999887 599999999999999998776 2223899999999876110
Q ss_pred hcccccccccccCCCCCCEEEEccCCc
Q psy15212 201 INKKTNNRFRFYKNKYFDRILADLPCT 227 (329)
Q Consensus 201 ~~~~~~~~~~~~~~~~fD~Vl~D~PCs 227 (329)
........|+.+.|++
T Consensus 93 -----------~~~~~~~~vv~NlPy~ 108 (262)
T PF00398_consen 93 -----------LLKNQPLLVVGNLPYN 108 (262)
T ss_dssp -----------HCSSSEEEEEEEETGT
T ss_pred -----------hhcCCceEEEEEeccc
Confidence 0123566899999974
No 235
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.77 E-value=2.6e-05 Score=67.58 Aligned_cols=70 Identities=19% Similarity=0.152 Sum_probs=60.9
Q ss_pred CCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRF 211 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 211 (329)
.|.+|||+|+|+|--++..+......|++.|+++...+.++-|.+.+|+.+.++..|... +
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g-~------------------ 139 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG-S------------------ 139 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC-C------------------
Confidence 488999999999998888886544799999999999999999999999999999888665 2
Q ss_pred cCCCCCCEEEE
Q psy15212 212 YKNKYFDRILA 222 (329)
Q Consensus 212 ~~~~~fD~Vl~ 222 (329)
+..||+||+
T Consensus 140 --~~~~Dl~La 148 (218)
T COG3897 140 --PPAFDLLLA 148 (218)
T ss_pred --CcceeEEEe
Confidence 467999995
No 236
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.76 E-value=4.5e-05 Score=70.76 Aligned_cols=79 Identities=20% Similarity=0.199 Sum_probs=60.2
Q ss_pred eEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccccccCC
Q psy15212 135 YVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKN 214 (329)
Q Consensus 135 ~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (329)
+|+|+|||.||.+..+.+..-..++++|+++..++..+.|.... ++.+|..++. .....
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~-----~~~~Di~~~~----------------~~~~~ 60 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNK-----LIEGDITKID----------------EKDFI 60 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCC-----CccCccccCc----------------hhhcC
Confidence 68999999999988887642257899999999999999887432 5667777764 10002
Q ss_pred CCCCEEEEccCCcccccccc
Q psy15212 215 KYFDRILADLPCTGSGVVRR 234 (329)
Q Consensus 215 ~~fD~Vl~D~PCsg~G~~~~ 234 (329)
..+|+|+.+|||.+....++
T Consensus 61 ~~~D~l~~gpPCq~fS~ag~ 80 (275)
T cd00315 61 PDIDLLTGGFPCQPFSIAGK 80 (275)
T ss_pred CCCCEEEeCCCChhhhHHhh
Confidence 46999999999988777655
No 237
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.70 E-value=0.0004 Score=61.14 Aligned_cols=134 Identities=16% Similarity=0.139 Sum_probs=85.6
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-e-EEEecCccccchhhhhhhhccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-A-TLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v-~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
.+.+||+++||+|-.+.+.|+.++ ..-.-.|.++..+..++..+...+++ + ..+..|+....-+ ....
T Consensus 25 ~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~--------~~~~- 95 (204)
T PF06080_consen 25 SGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWP--------WELP- 95 (204)
T ss_pred cCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCc--------cccc-
Confidence 344699999999999999999998 57778899999999999999888876 2 4556677654200 0000
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEE-EEcCCC----Ccccc
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLL-FVTCSL----WFEES 283 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lv-ysTCS~----~~~En 283 (329)
.......||.|++ .. + -++... ..-..+++.|.++|++||.|+ |.--.. .++-|
T Consensus 96 -~~~~~~~~D~i~~----~N--~-------------lHI~p~-~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN 154 (204)
T PF06080_consen 96 -APLSPESFDAIFC----IN--M-------------LHISPW-SAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESN 154 (204)
T ss_pred -cccCCCCcceeee----hh--H-------------HHhcCH-HHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHH
Confidence 0012458999984 11 1 111111 123458999999999999654 554332 23444
Q ss_pred HHHHHHHHh-hCCC
Q psy15212 284 EEQAIIFSK-NHKD 296 (329)
Q Consensus 284 e~vv~~~l~-~~~~ 296 (329)
+. ....|+ +.|.
T Consensus 155 ~~-FD~sLr~rdp~ 167 (204)
T PF06080_consen 155 AA-FDASLRSRDPE 167 (204)
T ss_pred HH-HHHHHhcCCCC
Confidence 44 444554 3443
No 238
>KOG1253|consensus
Probab=97.69 E-value=3e-05 Score=75.63 Aligned_cols=107 Identities=23% Similarity=0.286 Sum_probs=85.0
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhcccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKT 205 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~ 205 (329)
-.++-+|||.-+|+|--++..|...+ .+|+|+|.++..++..++|++.+++. ++..+.|+...-..
T Consensus 107 ~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~---------- 176 (525)
T KOG1253|consen 107 EEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYE---------- 176 (525)
T ss_pred ccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHh----------
Confidence 34567999999999999999998887 69999999999999999999999886 67788887654210
Q ss_pred cccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 206 NNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 206 ~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
.......||+|=+||==| -..+|+.|++.++.|| |++.|||
T Consensus 177 ----~~~~~~~FDvIDLDPyGs--------------------------~s~FLDsAvqav~~gG-LL~vT~T 217 (525)
T KOG1253|consen 177 ----HPMVAKFFDVIDLDPYGS--------------------------PSPFLDSAVQAVRDGG-LLCVTCT 217 (525)
T ss_pred ----ccccccccceEecCCCCC--------------------------ccHHHHHHHHHhhcCC-EEEEEec
Confidence 001236899999998422 1247999999999999 5567887
No 239
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.65 E-value=0.00022 Score=62.88 Aligned_cols=157 Identities=17% Similarity=0.131 Sum_probs=84.5
Q ss_pred cceEEEechhHHHHhhhc--CCCCCCeEEeecCCCchHHHHHHHhC---C--CEEEEEeCChhHHHHHHHHHHHcCCceE
Q psy15212 111 NGFCSIQDAAAQLAAPLL--DIRSGMYVLDACSAPGGKTCHLLEIA---D--IKLISVDNNLSRLNMISENLKRLNLKAT 183 (329)
Q Consensus 111 ~G~~~~Qd~~s~l~~~~l--~~~~g~~VLDlcag~G~kt~~la~~~---~--~~v~avD~~~~rl~~l~~n~~~~g~~v~ 183 (329)
-|.-.+|.+.-+++-+.+ +.+| +.|+.+|.+-||-++..|.++ + ++|+++|++-...........-+.-.++
T Consensus 10 ~G~pi~q~P~Dm~~~qeli~~~kP-d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~ 88 (206)
T PF04989_consen 10 LGRPIIQYPQDMVAYQELIWELKP-DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRIT 88 (206)
T ss_dssp TTEEESS-HHHHHHHHHHHHHH---SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEE
T ss_pred CCeehhcCHHHHHHHHHHHHHhCC-CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceE
Confidence 367777888777766644 3555 599999999999998887643 2 7999999965554332222222222389
Q ss_pred EEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHh
Q psy15212 184 LILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWK 263 (329)
Q Consensus 184 ~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~ 263 (329)
++.+|..+... +. .-...........|+.|.--+.. .....|+.-..
T Consensus 89 ~i~Gds~d~~~--~~--------~v~~~~~~~~~vlVilDs~H~~~-----------------------hvl~eL~~y~p 135 (206)
T PF04989_consen 89 FIQGDSIDPEI--VD--------QVRELASPPHPVLVILDSSHTHE-----------------------HVLAELEAYAP 135 (206)
T ss_dssp EEES-SSSTHH--HH--------TSGSS----SSEEEEESS----S-----------------------SHHHHHHHHHH
T ss_pred EEECCCCCHHH--HH--------HHHHhhccCCceEEEECCCccHH-----------------------HHHHHHHHhCc
Confidence 99999877541 00 00000112345688888653211 13445777888
Q ss_pred cCCCCCEEEEEc--CCCCccc------------cHHHHHHHHhhCCCcEEec
Q psy15212 264 MLKPGGKLLFVT--CSLWFEE------------SEEQAIIFSKNHKDSIRLN 301 (329)
Q Consensus 264 ~LkpgG~lvysT--CS~~~~E------------ne~vv~~~l~~~~~~~~~~ 301 (329)
++++|+++|... |+..++. -...|..||+.|++|+.-.
T Consensus 136 lv~~G~Y~IVeDt~~~~~~~~~~~~~~w~~g~~p~~av~~fL~~~~~f~iD~ 187 (206)
T PF04989_consen 136 LVSPGSYLIVEDTIIEDWPESWFPDRPWGPGNNPKTAVKEFLAEHPDFEIDT 187 (206)
T ss_dssp T--TT-EEEETSHHHHHHHHS-------------HHHHHHHHHTTTTEEEET
T ss_pred cCCCCCEEEEEeccccccccccccccchhhhhHHHHHHHHHHHHCCCcEecc
Confidence 999999987542 1122221 2456899999999976544
No 240
>PRK04148 hypothetical protein; Provisional
Probab=97.62 E-value=0.0008 Score=55.43 Aligned_cols=57 Identities=12% Similarity=0.040 Sum_probs=45.2
Q ss_pred CCCCCeEEeecCCCch-HHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 130 IRSGMYVLDACSAPGG-KTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~-kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
...+.+|||+|+|+|. .+..+++ .+..|+|+|+++.+++.++++ + ++++..|..+..
T Consensus 14 ~~~~~kileIG~GfG~~vA~~L~~-~G~~ViaIDi~~~aV~~a~~~----~--~~~v~dDlf~p~ 71 (134)
T PRK04148 14 KGKNKKIVELGIGFYFKVAKKLKE-SGFDVIVIDINEKAVEKAKKL----G--LNAFVDDLFNPN 71 (134)
T ss_pred cccCCEEEEEEecCCHHHHHHHHH-CCCEEEEEECCHHHHHHHHHh----C--CeEEECcCCCCC
Confidence 3456799999999996 6666665 467999999999988877665 3 578889988865
No 241
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.59 E-value=0.00034 Score=57.98 Aligned_cols=115 Identities=21% Similarity=0.256 Sum_probs=69.2
Q ss_pred EEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCcccccccc
Q psy15212 157 KLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRR 234 (329)
Q Consensus 157 ~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~ 234 (329)
+|+|+|+.++.++..+++++..++. ++++...-..+. .+...+.+|.|+. +.|.+-.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~----------------~~i~~~~v~~~iF-----NLGYLPg 59 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLD----------------EYIPEGPVDAAIF-----NLGYLPG 59 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGG----------------GT--S--EEEEEE-----EESB-CT
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHH----------------hhCccCCcCEEEE-----ECCcCCC
Confidence 6999999999999999999999884 788877666654 2323347888875 4565532
Q ss_pred CCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCcc--ccHHHHHHHHhhCC--CcEEe
Q psy15212 235 NPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFE--ESEEQAIIFSKNHK--DSIRL 300 (329)
Q Consensus 235 ~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~--Ene~vv~~~l~~~~--~~~~~ 300 (329)
. ...+......-..-|+.|+++|+|||.++...-.-|+. |-.+.|..|++..+ .|.+.
T Consensus 60 g--------Dk~i~T~~~TTl~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~ 121 (140)
T PF06962_consen 60 G--------DKSITTKPETTLKALEAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVL 121 (140)
T ss_dssp S---------TTSB--HHHHHHHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEE
T ss_pred C--------CCCCCcCcHHHHHHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEE
Confidence 1 11111122233456889999999999998887777763 33334555665542 45443
No 242
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.57 E-value=0.0007 Score=59.67 Aligned_cols=139 Identities=17% Similarity=0.133 Sum_probs=76.4
Q ss_pred hhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhh
Q psy15212 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLY 198 (329)
Q Consensus 119 ~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~ 198 (329)
|--.++..+....++-.|-|+|||-+..+..+.. +-+|.+.|+... .-.++.+|+.+.+
T Consensus 59 Pvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~--~~~V~SfDLva~--------------n~~Vtacdia~vP----- 117 (219)
T PF05148_consen 59 PVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPN--KHKVHSFDLVAP--------------NPRVTACDIANVP----- 117 (219)
T ss_dssp HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S-----EEEEESS-S--------------STTEEES-TTS-S-----
T ss_pred cHHHHHHHHHhcCCCEEEEECCCchHHHHHhccc--CceEEEeeccCC--------------CCCEEEecCccCc-----
Confidence 3333444444444467999999999977644321 147999998432 1247789998877
Q ss_pred hhhcccccccccccCCCCCCEEEEccCC-ccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc-C
Q psy15212 199 IDINKKTNNRFRFYKNKYFDRILADLPC-TGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT-C 276 (329)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~fD~Vl~D~PC-sg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT-C 276 (329)
+.++..|++++ | |=+|+ -...+|.+|.+.||+||.|.++- +
T Consensus 118 -------------L~~~svDv~Vf---cLSLMGT---------------------n~~~fi~EA~RvLK~~G~L~IAEV~ 160 (219)
T PF05148_consen 118 -------------LEDESVDVAVF---CLSLMGT---------------------NWPDFIREANRVLKPGGILKIAEVK 160 (219)
T ss_dssp ---------------TT-EEEEEE---ES---SS----------------------HHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred -------------CCCCceeEEEE---EhhhhCC---------------------CcHHHHHHHHheeccCcEEEEEEec
Confidence 45788999985 3 22232 13468999999999999888764 4
Q ss_pred CCCccccHHHHHHHHhhCCCcEEecCCCcccCCCCCCCCCCeEEEEEEEecC
Q psy15212 277 SLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKRK 328 (329)
Q Consensus 277 S~~~~Ene~vv~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~gff~a~l~k~~ 328 (329)
| .-+|.......++.. +|++.... ....=|++..|+|..
T Consensus 161 S--Rf~~~~~F~~~~~~~-GF~~~~~d----------~~n~~F~~f~F~K~~ 199 (219)
T PF05148_consen 161 S--RFENVKQFIKALKKL-GFKLKSKD----------ESNKHFVLFEFKKIR 199 (219)
T ss_dssp G--G-S-HHHHHHHHHCT-TEEEEEEE------------STTEEEEEEEE-S
T ss_pred c--cCcCHHHHHHHHHHC-CCeEEecc----------cCCCeEEEEEEEEcC
Confidence 4 333555555556655 77665421 233456777777653
No 243
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.53 E-value=0.00081 Score=63.58 Aligned_cols=110 Identities=19% Similarity=0.170 Sum_probs=75.9
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCC-----CEEEEEeCChhHHHHHHHHHHHcCC---ceEEEecCccccchhhhhhhhc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIAD-----IKLISVDNNLSRLNMISENLKRLNL---KATLILSDISKINLKKLYIDIN 202 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~-----~~v~avD~~~~rl~~l~~n~~~~g~---~v~~~~~D~~~~~~~~~~~~~~ 202 (329)
.++..++|+|||.|.|+..+++.+. ...+++|+|...++.+.+++..... .+.-+++|.....
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l--------- 145 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGL--------- 145 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHH---------
Confidence 4677999999999999998877553 4789999999999999999983333 3566888886642
Q ss_pred ccccccccccC----CCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHh-cCCCCCEEEEEc
Q psy15212 203 KKTNNRFRFYK----NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWK-MLKPGGKLLFVT 275 (329)
Q Consensus 203 ~~~~~~~~~~~----~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~-~LkpgG~lvysT 275 (329)
.+.. ......|+. |=|+.|.+ .+. ....+|+...+ .|+|||.|+.+.
T Consensus 146 -------~~l~~~~~~~~~r~~~f--lGSsiGNf----------~~~-------ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 146 -------AWLKRPENRSRPTTILW--LGSSIGNF----------SRP-------EAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred -------hhcccccccCCccEEEE--eCccccCC----------CHH-------HHHHHHHHHHHhhCCCCCEEEEec
Confidence 1111 123445542 33333432 121 23467888888 999999999875
No 244
>PRK00536 speE spermidine synthase; Provisional
Probab=97.52 E-value=0.0017 Score=59.75 Aligned_cols=100 Identities=15% Similarity=0.051 Sum_probs=70.9
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcC--Cc---eEEEecCccccchhhhhhhhccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLN--LK---ATLILSDISKINLKKLYIDINKK 204 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g--~~---v~~~~~D~~~~~~~~~~~~~~~~ 204 (329)
+.| .+||=+|.|-|+..-.+++.- .+|+-||+++..++.+++-+.... .+ ++++. ...+
T Consensus 71 ~~p-k~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~~~------------- 134 (262)
T PRK00536 71 KEL-KEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QLLD------------- 134 (262)
T ss_pred CCC-CeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hhhh-------------
Confidence 444 699999999999999999874 499999999999999999554432 22 44443 1110
Q ss_pred ccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCC
Q psy15212 205 TNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLW 279 (329)
Q Consensus 205 ~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~ 279 (329)
...++||+||+|-..+ .++.+.+.+.|+|||.+|.-+-|..
T Consensus 135 -------~~~~~fDVIIvDs~~~---------------------------~~fy~~~~~~L~~~Gi~v~Qs~sp~ 175 (262)
T PRK00536 135 -------LDIKKYDLIICLQEPD---------------------------IHKIDGLKRMLKEDGVFISVAKHPL 175 (262)
T ss_pred -------ccCCcCCEEEEcCCCC---------------------------hHHHHHHHHhcCCCcEEEECCCCcc
Confidence 1236899999994211 2345677888999999998654443
No 245
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.49 E-value=0.00029 Score=62.47 Aligned_cols=101 Identities=20% Similarity=0.177 Sum_probs=68.1
Q ss_pred CCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhcccccccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNRFRF 211 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 211 (329)
..+.||+|||-|..|-+++...-.+|-.+|..++-++.+++.+...+-. .++++.-..++.
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~------------------ 117 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFT------------------ 117 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG--------------------
T ss_pred cceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhcc------------------
Confidence 4689999999999998875322259999999999999999876653333 467777666654
Q ss_pred cCCCCCCEEEEccCCccccccccCCCCccc---CChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 212 YKNKYFDRILADLPCTGSGVVRRNPDIPWL---RRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 212 ~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~---~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
....+||+|.+ .|- .+.+++ .++|+++.+.|+|||.+|.=
T Consensus 118 P~~~~YDlIW~----------------QW~lghLTD~dl-------v~fL~RCk~~L~~~G~IvvK 160 (218)
T PF05891_consen 118 PEEGKYDLIWI----------------QWCLGHLTDEDL-------VAFLKRCKQALKPNGVIVVK 160 (218)
T ss_dssp --TT-EEEEEE----------------ES-GGGS-HHHH-------HHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCcEeEEEe----------------hHhhccCCHHHH-------HHHHHHHHHhCcCCcEEEEE
Confidence 12468999975 232 233332 46899999999999988863
No 246
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.48 E-value=0.00036 Score=62.48 Aligned_cols=77 Identities=25% Similarity=0.249 Sum_probs=51.4
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCce-EEEecCccccchhhhhhhhcccccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKA-TLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v-~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
-+|..+||+||.+||+|-.+.+....+|+|+|+....+..- + |....+ .+-..|++.+.. .
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~k---L-R~d~rV~~~E~tN~r~l~~------------~-- 139 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWK---L-RNDPRVIVLERTNVRYLTP------------E-- 139 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHh---H-hcCCcEEEEecCChhhCCH------------H--
Confidence 35889999999999999999987557999999977555421 1 112222 333445555431 1
Q ss_pred cccCCCCCCEEEEccCCc
Q psy15212 210 RFYKNKYFDRILADLPCT 227 (329)
Q Consensus 210 ~~~~~~~fD~Vl~D~PCs 227 (329)
.-.+..|.|++|...-
T Consensus 140 --~~~~~~d~~v~DvSFI 155 (245)
T COG1189 140 --DFTEKPDLIVIDVSFI 155 (245)
T ss_pred --HcccCCCeEEEEeehh
Confidence 1124789999998754
No 247
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.46 E-value=0.00042 Score=57.16 Aligned_cols=57 Identities=18% Similarity=0.242 Sum_probs=48.9
Q ss_pred eEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccc
Q psy15212 135 YVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISK 191 (329)
Q Consensus 135 ~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~ 191 (329)
.|||+||+.|..+..+++..+ .+|+++|.++..++.+++|++.+++. ++++......
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 489999999999999998766 59999999999999999999998875 6666655443
No 248
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.44 E-value=0.00034 Score=61.59 Aligned_cols=107 Identities=22% Similarity=0.273 Sum_probs=59.5
Q ss_pred CCeEEeecCCCchHHHHH----HHhCC------CEEEEEeCChhHHHHHHHH--------------HHHcC---------
Q psy15212 133 GMYVLDACSAPGGKTCHL----LEIAD------IKLISVDNNLSRLNMISEN--------------LKRLN--------- 179 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~l----a~~~~------~~v~avD~~~~rl~~l~~n--------------~~~~g--------- 179 (329)
.-+|+.+||++|-=.-.+ .+..+ .+|+|.|+|+..++.+++- .+++-
T Consensus 32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~ 111 (196)
T PF01739_consen 32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYR 111 (196)
T ss_dssp -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTT
T ss_pred CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCcee
Confidence 358999999999744333 33111 3999999999999988762 11110
Q ss_pred C------ceEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHH
Q psy15212 180 L------KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKY 253 (329)
Q Consensus 180 ~------~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~ 253 (329)
+ .|++...|..+. ....+.||+|+| |+--+ .--.+.
T Consensus 112 v~~~lr~~V~F~~~NL~~~------------------~~~~~~fD~I~C-----------RNVlI---------YF~~~~ 153 (196)
T PF01739_consen 112 VKPELRKMVRFRRHNLLDP------------------DPPFGRFDLIFC-----------RNVLI---------YFDPET 153 (196)
T ss_dssp E-HHHHTTEEEEE--TT-S------------------------EEEEEE------------SSGG---------GS-HHH
T ss_pred EChHHcCceEEEecccCCC------------------CcccCCccEEEe-----------cCEEE---------EeCHHH
Confidence 0 023333333321 113468999996 11111 111345
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 254 SCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 254 q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
|.++++...+.|+|||+|+.+..-
T Consensus 154 ~~~vl~~l~~~L~pgG~L~lG~sE 177 (196)
T PF01739_consen 154 QQRVLRRLHRSLKPGGYLFLGHSE 177 (196)
T ss_dssp HHHHHHHHGGGEEEEEEEEE-TT-
T ss_pred HHHHHHHHHHHcCCCCEEEEecCc
Confidence 788999999999999999987543
No 249
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.44 E-value=0.00054 Score=63.79 Aligned_cols=41 Identities=15% Similarity=0.195 Sum_probs=31.8
Q ss_pred CeEEeecCCCchHHHHHH----HhCC-----CEEEEEeCChhHHHHHHHH
Q psy15212 134 MYVLDACSAPGGKTCHLL----EIAD-----IKLISVDNNLSRLNMISEN 174 (329)
Q Consensus 134 ~~VLDlcag~G~kt~~la----~~~~-----~~v~avD~~~~rl~~l~~n 174 (329)
-+|+.+||++|-=.-.+| +..+ .+|+|.|+|...++.+++-
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G 166 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSG 166 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhC
Confidence 589999999997444333 3222 4899999999999998875
No 250
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=97.40 E-value=0.0039 Score=53.45 Aligned_cols=143 Identities=20% Similarity=0.200 Sum_probs=91.9
Q ss_pred cCCCchHHHHHHHhCC--CEE--EEEeCChhHHH---HHHHHHHHc---CCceEEEecCccccchhhhhhhhcccccccc
Q psy15212 140 CSAPGGKTCHLLEIAD--IKL--ISVDNNLSRLN---MISENLKRL---NLKATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 140 cag~G~kt~~la~~~~--~~v--~avD~~~~rl~---~l~~n~~~~---g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
|=|.-+++..+++..+ ..| ++.|......+ .+..|++.+ |+. .+...|++++.
T Consensus 4 GeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~-V~~~VDat~l~---------------- 66 (166)
T PF10354_consen 4 GEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVT-VLHGVDATKLH---------------- 66 (166)
T ss_pred eccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCc-cccCCCCCccc----------------
Confidence 3444556666776655 344 45555444333 233565554 433 24567888876
Q ss_pred ccc--CCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHH
Q psy15212 210 RFY--KNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQA 287 (329)
Q Consensus 210 ~~~--~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv 287 (329)
... ....||+|+-+-|+.|.|. ......+.....+-..+++.|.++|+++|.+..+-|.-.|- +...|
T Consensus 67 ~~~~~~~~~FDrIiFNFPH~G~~~---------~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py-~~W~i 136 (166)
T PF10354_consen 67 KHFRLKNQRFDRIIFNFPHVGGGS---------EDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPY-DSWNI 136 (166)
T ss_pred ccccccCCcCCEEEEeCCCCCCCc---------cchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCC-ccccH
Confidence 222 4578999999999997433 11234566667778899999999999999999998887663 66777
Q ss_pred HHHHhhCCCcEEec---CCCcccCCC
Q psy15212 288 IIFSKNHKDSIRLN---SPGQLLPTV 310 (329)
Q Consensus 288 ~~~l~~~~~~~~~~---~~~~~~p~~ 310 (329)
....++. ++.+.. .....+|+.
T Consensus 137 ~~lA~~~-gl~l~~~~~F~~~~ypgY 161 (166)
T PF10354_consen 137 EELAAEA-GLVLVRKVPFDPSDYPGY 161 (166)
T ss_pred HHHHHhc-CCEEEEEecCCHHHCCCc
Confidence 7666654 665543 334556664
No 251
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.37 E-value=0.0013 Score=60.24 Aligned_cols=158 Identities=18% Similarity=0.228 Sum_probs=85.2
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCC-c--------------------------
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNL-K-------------------------- 181 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~-~-------------------------- 181 (329)
..|.++||+||||--.. +..... .+|+..|..+.-.+.+++-++.-+. .
T Consensus 55 ~~g~~llDiGsGPtiy~--~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR 132 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQ--LLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLR 132 (256)
T ss_dssp S-EEEEEEES-TT--GG--GTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHh--hhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHH
Confidence 35789999999994332 221222 5899999999988887776654332 0
Q ss_pred --e-EEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHH
Q psy15212 182 --A-TLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKIL 258 (329)
Q Consensus 182 --v-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL 258 (329)
| +++.+|.++.+ +-++. ...+.+||.|+.=- .-+-+..-.....+.+
T Consensus 133 ~~Vk~Vv~cDV~~~~----------pl~~~--~~~p~~~D~v~s~f------------------cLE~a~~d~~~y~~al 182 (256)
T PF01234_consen 133 RAVKQVVPCDVTQPN----------PLDPP--VVLPPKFDCVISSF------------------CLESACKDLDEYRRAL 182 (256)
T ss_dssp HHEEEEEE--TTSSS----------TTTTS---SS-SSEEEEEEES------------------SHHHH-SSHHHHHHHH
T ss_pred HhhceEEEeeccCCC----------CCCcc--ccCccchhhhhhhH------------------HHHHHcCCHHHHHHHH
Confidence 1 13333333321 00000 00123588887411 1111222223466789
Q ss_pred HHHHhcCCCCCEEEEEcC---C---CC------ccccHHHHHHHHhhCCCcEEecCCCcccCCCCCCCCCCeEEEEEEEe
Q psy15212 259 NNLWKMLKPGGKLLFVTC---S---LW------FEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 326 (329)
Q Consensus 259 ~~a~~~LkpgG~lvysTC---S---~~------~~Ene~vv~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~gff~a~l~k 326 (329)
++..++|||||+|+.... | +. -.=|++.|...++.. ++.+.... + -.. ..+.+|.|++.=+|
T Consensus 183 ~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~a-G~~i~~~~-~-~~~---~~d~~~~~f~~a~K 256 (256)
T PF01234_consen 183 RNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEEA-GFDIEDLE-K-QSK---VSDYEGMFFLVARK 256 (256)
T ss_dssp HHHHTTEEEEEEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHHT-TEEEEEEE-G--TT---TB---EEEEEEEEE
T ss_pred HHHHHHcCCCcEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHHc-CCEEEecc-c-ccC---cCCCCcEEEEEEeC
Confidence 999999999999998742 1 11 114889999999886 66655443 1 111 15778998887765
No 252
>KOG1098|consensus
Probab=97.34 E-value=0.00046 Score=68.99 Aligned_cols=123 Identities=20% Similarity=0.261 Sum_probs=73.9
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccc----cchhhhhhhhc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISK----INLKKLYIDIN 202 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~----~~~~~~~~~~~ 202 (329)
++++..|||+||+||++.-.+++.++ +.|+|+|+-+-.. ++ +..++.|++. ..+.
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pikp-----------~~~c~t~v~dIttd~cr~~l~------- 103 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIKP-----------IPNCDTLVEDITTDECRSKLR------- 103 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeeccc-----------CCccchhhhhhhHHHHHHHHH-------
Confidence 46788999999999999999999888 7999999865331 11 2233333332 1111
Q ss_pred ccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccc
Q psy15212 203 KKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEE 282 (329)
Q Consensus 203 ~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~E 282 (329)
......+.|+||.|..-+-.|. | . .+...-..+-..-|+-|..+|..||.+|-- +++.+
T Consensus 104 -------k~l~t~~advVLhDgapnVg~~--------w--~-~DA~~q~~L~l~al~LA~~~l~~~g~fvtk---vfrs~ 162 (780)
T KOG1098|consen 104 -------KILKTWKADVVLHDGAPNVGGN--------W--V-QDAFQQACLTLRALKLATEFLAKGGTFVTK---VFRSE 162 (780)
T ss_pred -------HHHHhCCCcEEeecCCCccchh--------H--H-HHHHHhhHHHHHHHHHHHHHHHhcCccccc---cccCC
Confidence 1122345699999865332222 2 2 223333334455678889999999997633 34444
Q ss_pred cHHHHHHHH
Q psy15212 283 SEEQAIIFS 291 (329)
Q Consensus 283 ne~vv~~~l 291 (329)
.-.-+-+.+
T Consensus 163 dy~~ll~v~ 171 (780)
T KOG1098|consen 163 DYNGLLRVF 171 (780)
T ss_pred cchHHHHHH
Confidence 444344433
No 253
>KOG0024|consensus
Probab=97.28 E-value=0.0016 Score=60.90 Aligned_cols=109 Identities=21% Similarity=0.250 Sum_probs=72.0
Q ss_pred hhcCCCCCCeEEeecCCCch-HHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc-hhhhhhhhc
Q psy15212 126 PLLDIRSGMYVLDACSAPGG-KTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN-LKKLYIDIN 202 (329)
Q Consensus 126 ~~l~~~~g~~VLDlcag~G~-kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~-~~~~~~~~~ 202 (329)
..-++++|.+||=+||||=| .|...|+.++ .+|+.+|+++.|++.+++ +|..+........... +.++. .
T Consensus 163 r~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~----~Ga~~~~~~~~~~~~~~~~~~v---~ 235 (354)
T KOG0024|consen 163 RRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK----FGATVTDPSSHKSSPQELAELV---E 235 (354)
T ss_pred hhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH----hCCeEEeeccccccHHHHHHHH---H
Confidence 34468999999999999955 4555567777 799999999999998876 6776322222211111 00000 0
Q ss_pred ccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 203 KKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 203 ~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
..+....||+.+ -|||... -++.|...++.||+++..-|
T Consensus 236 -------~~~g~~~~d~~~---dCsG~~~-------------------------~~~aai~a~r~gGt~vlvg~ 274 (354)
T KOG0024|consen 236 -------KALGKKQPDVTF---DCSGAEV-------------------------TIRAAIKATRSGGTVVLVGM 274 (354)
T ss_pred -------hhccccCCCeEE---EccCchH-------------------------HHHHHHHHhccCCEEEEecc
Confidence 112235689887 4776533 46677888999999888755
No 254
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.24 E-value=0.0012 Score=59.43 Aligned_cols=88 Identities=24% Similarity=0.326 Sum_probs=57.3
Q ss_pred HHHHhhhcCCCCCC--eEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcC----C------ceEEEecC
Q psy15212 121 AQLAAPLLDIRSGM--YVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLN----L------KATLILSD 188 (329)
Q Consensus 121 s~l~~~~l~~~~g~--~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g----~------~v~~~~~D 188 (329)
....+.+.++++|. +|||+-||-|.=++.+|.. |++|+++|.|+-....++.-++++. . .++++++|
T Consensus 62 ~~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~-G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d 140 (234)
T PF04445_consen 62 GDPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASL-GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGD 140 (234)
T ss_dssp GSHHHHHTT-BTTB---EEETT-TTSHHHHHHHHH-T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-
T ss_pred ccHHHHHhCCCCCCCCEEEECCCcchHHHHHHHcc-CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCC
Confidence 35566677777764 8999999999999999975 6799999999998888887766541 2 27899999
Q ss_pred ccccchhhhhhhhcccccccccccCCCCCCEEEEccCC
Q psy15212 189 ISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPC 226 (329)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PC 226 (329)
+..+- . .....||+|.+||=.
T Consensus 141 ~~~~L----------------~-~~~~s~DVVY~DPMF 161 (234)
T PF04445_consen 141 ALEYL----------------R-QPDNSFDVVYFDPMF 161 (234)
T ss_dssp CCCHC----------------C-CHSS--SEEEE--S-
T ss_pred HHHHH----------------h-hcCCCCCEEEECCCC
Confidence 88763 1 235789999999953
No 255
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.21 E-value=0.0031 Score=58.09 Aligned_cols=123 Identities=22% Similarity=0.211 Sum_probs=67.0
Q ss_pred CCeEEeecCCCch----HHHHHHHhCC------CEEEEEeCChhHHHHHHHHHHH-----cCCc----eE-EEecCcccc
Q psy15212 133 GMYVLDACSAPGG----KTCHLLEIAD------IKLISVDNNLSRLNMISENLKR-----LNLK----AT-LILSDISKI 192 (329)
Q Consensus 133 g~~VLDlcag~G~----kt~~la~~~~------~~v~avD~~~~rl~~l~~n~~~-----~g~~----v~-~~~~D~~~~ 192 (329)
.-+|+-++|++|- .+..+.+..+ .+|+|.|+|...++.++.-.=. -+++ -+ +.......+
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 3489999999996 3444444442 5999999999999988763211 2332 01 212211111
Q ss_pred ch-hhhhhhhcccccccc-cccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCE
Q psy15212 193 NL-KKLYIDINKKTNNRF-RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 270 (329)
Q Consensus 193 ~~-~~~~~~~~~~~~~~~-~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~ 270 (329)
.+ +.+.--..=..-+.+ +.+..+.||+|+| |+--+- --...|.++++.-+..|+|||.
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfC-----------RNVLIY---------Fd~~~q~~il~~f~~~L~~gG~ 236 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFC-----------RNVLIY---------FDEETQERILRRFADSLKPGGL 236 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEE-----------cceEEe---------eCHHHHHHHHHHHHHHhCCCCE
Confidence 10 000000000000000 0112467999997 111111 1134689999999999999999
Q ss_pred EEEEc
Q psy15212 271 LLFVT 275 (329)
Q Consensus 271 lvysT 275 (329)
|+...
T Consensus 237 LflG~ 241 (268)
T COG1352 237 LFLGH 241 (268)
T ss_pred EEEcc
Confidence 99753
No 256
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.18 E-value=0.0012 Score=61.65 Aligned_cols=147 Identities=14% Similarity=0.100 Sum_probs=77.4
Q ss_pred CCeEEeecCCCchHHHHHH-HhCCCEEEEEeCChhHHHHHHHHHHHc-CCc--eEEEecCccccchhhhhhhhccccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLL-EIADIKLISVDNNLSRLNMISENLKRL-NLK--ATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la-~~~~~~v~avD~~~~rl~~l~~n~~~~-g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
.-++||+|+|.-.+--.|+ ...+-+.+|.|+++..++.+++|++++ ++. |+++...-....+..+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i----------- 171 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGI----------- 171 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTS-----------
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhh-----------
Confidence 4579999999987754444 334469999999999999999999999 886 7776543221110000
Q ss_pred ccccCCCCCCEEEEccCCccccc-c-----cc------------CCCCcccCCh-hHHHH--HHHHHHHHHHHHHhcCCC
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGV-V-----RR------------NPDIPWLRRK-NDIKK--LSKYSCKILNNLWKMLKP 267 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~-~-----~~------------~p~~~~~~~~-~~~~~--l~~~q~~lL~~a~~~Lkp 267 (329)
....+.||..+|+||...+.- . ++ .|..-..-+. +-... =...-.+|+++...+-
T Consensus 172 --~~~~e~~dftmCNPPFy~s~~e~~~~~~~k~~nl~~~~~~~~~p~~~~~G~~~El~~~GGEv~FV~rMI~ES~~~~-- 247 (299)
T PF05971_consen 172 --IQPNERFDFTMCNPPFYSSQEEAEAGTERKWKNLGRPNKKRSPPKLNFTGQSNELWCEGGEVAFVKRMIKESLQLK-- 247 (299)
T ss_dssp --TT--S-EEEEEE-----SS--------------------------------TTTTHHHHTHHHHHHHHHHHHHHHG--
T ss_pred --hcccceeeEEecCCccccChhhhcccccccccccccccccccCccccCCCCcceEEcCCccHHHHHHHHHHHHHhC--
Confidence 012468999999999754421 1 11 1111111011 11111 1234466777776652
Q ss_pred CCEEEEEcCCCCccccHHHHHHHHhhCC
Q psy15212 268 GGKLLFVTCSLWFEESEEQAIIFSKNHK 295 (329)
Q Consensus 268 gG~lvysTCS~~~~Ene~vv~~~l~~~~ 295 (329)
....+|+ |=+...+|-..+...|++..
T Consensus 248 ~~v~WfT-smvgKkssL~~l~~~L~~~~ 274 (299)
T PF05971_consen 248 DQVRWFT-SMVGKKSSLKPLKKELKKLG 274 (299)
T ss_dssp GGEEEEE-EEESSGGGHHHHHHHHHHTT
T ss_pred CCcEEEe-ecccCcccHHHHHHHHHhcC
Confidence 2455654 55788899999999998763
No 257
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=97.18 E-value=0.00054 Score=64.30 Aligned_cols=78 Identities=21% Similarity=0.298 Sum_probs=58.0
Q ss_pred eEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccccccCC
Q psy15212 135 YVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKN 214 (329)
Q Consensus 135 ~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (329)
+++|+|||.||.+.-+-+..-..+.|+|+++...+..+.|.. .+..+|..+..... ++.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~------~~~~~Di~~~~~~~---------------l~~ 60 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP------EVICGDITEIDPSD---------------LPK 60 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT------EEEESHGGGCHHHH---------------HHH
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc------cccccccccccccc---------------ccc
Confidence 689999999999998876432589999999999999999987 67788888865211 122
Q ss_pred CCCCEEEEccCCcccccccc
Q psy15212 215 KYFDRILADLPCTGSGVVRR 234 (329)
Q Consensus 215 ~~fD~Vl~D~PCsg~G~~~~ 234 (329)
.+|+++.-|||.+....++
T Consensus 61 -~~D~l~ggpPCQ~fS~ag~ 79 (335)
T PF00145_consen 61 -DVDLLIGGPPCQGFSIAGK 79 (335)
T ss_dssp -T-SEEEEE---TTTSTTST
T ss_pred -cceEEEeccCCceEecccc
Confidence 5999999999998877764
No 258
>KOG1709|consensus
Probab=97.18 E-value=0.004 Score=54.99 Aligned_cols=106 Identities=16% Similarity=0.134 Sum_probs=73.3
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
.+|.+||.+|-|-|...+.+-+.-+.+-+-++-++.-+++++.+--+-.-+|.++.+-=.+.. +
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl----------------~ 163 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVL----------------N 163 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhh----------------c
Confidence 578899999999999998887765567778899999999888875544333444443222211 1
Q ss_pred ccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 211 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
.+.++.||.|+-|.= ..+.+--+.+-.++.++|||+|.+-|.
T Consensus 164 ~L~d~~FDGI~yDTy----------------------~e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 164 TLPDKHFDGIYYDTY----------------------SELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred cccccCcceeEeech----------------------hhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 135677999998741 112222344556999999999988774
No 259
>KOG1227|consensus
Probab=97.05 E-value=0.00045 Score=63.66 Aligned_cols=95 Identities=18% Similarity=0.167 Sum_probs=69.0
Q ss_pred cccceEEEechhHHHHhh--------hcC-CCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHc
Q psy15212 109 FFNGFCSIQDAAAQLAAP--------LLD-IRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRL 178 (329)
Q Consensus 109 ~~~G~~~~Qd~~s~l~~~--------~l~-~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~ 178 (329)
..+|-.+.=|+.-.+... ++. --.|+.|.||.||-|.+|+...-..+ ..|+|+|.++..++.++++++.+
T Consensus 162 v~NGI~~~~d~t~~MFS~GN~~EK~Rv~~~sc~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N 241 (351)
T KOG1227|consen 162 VQNGITQIWDPTKTMFSRGNIKEKKRVLNTSCDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEAN 241 (351)
T ss_pred hhcCeEEEechhhhhhhcCcHHHHHHhhhcccccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhc
Confidence 345777766766443321 111 12368999999999999994443445 69999999999999999999999
Q ss_pred CCc--eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEE
Q psy15212 179 NLK--ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILA 222 (329)
Q Consensus 179 g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~ 222 (329)
++. ..++.+|-+... .....|.|.+
T Consensus 242 ~V~~r~~i~~gd~R~~~-------------------~~~~AdrVnL 268 (351)
T KOG1227|consen 242 NVMDRCRITEGDNRNPK-------------------PRLRADRVNL 268 (351)
T ss_pred chHHHHHhhhccccccC-------------------ccccchheee
Confidence 875 567778877654 3467888865
No 260
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.04 E-value=0.027 Score=50.01 Aligned_cols=123 Identities=16% Similarity=0.064 Sum_probs=95.6
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
++.+.++.|+||==|.....+.+... ..+++.|+++.-++.+.+|++++++. +++..+|....-
T Consensus 14 V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l------------- 80 (226)
T COG2384 14 VKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVL------------- 80 (226)
T ss_pred HHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcccc-------------
Confidence 34567799999999999999998655 69999999999999999999999986 788888885432
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHH
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQ 286 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~v 286 (329)
-.+..+|.|+. .|+|- .+-.+||++..+.|+.--++|. -|.-++..
T Consensus 81 -----~~~d~~d~ivI----AGMGG--------------------~lI~~ILee~~~~l~~~~rlIL-----QPn~~~~~ 126 (226)
T COG2384 81 -----ELEDEIDVIVI----AGMGG--------------------TLIREILEEGKEKLKGVERLIL-----QPNIHTYE 126 (226)
T ss_pred -----CccCCcCEEEE----eCCcH--------------------HHHHHHHHHhhhhhcCcceEEE-----CCCCCHHH
Confidence 13447888774 34443 1356789999888875557774 68888899
Q ss_pred HHHHHhhCCCcEEe
Q psy15212 287 AIIFSKNHKDSIRL 300 (329)
Q Consensus 287 v~~~l~~~~~~~~~ 300 (329)
+..+|..+ ++.+.
T Consensus 127 LR~~L~~~-~~~I~ 139 (226)
T COG2384 127 LREWLSAN-SYEIK 139 (226)
T ss_pred HHHHHHhC-Cceee
Confidence 99999887 55443
No 261
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.03 E-value=0.0067 Score=57.57 Aligned_cols=162 Identities=19% Similarity=0.207 Sum_probs=97.7
Q ss_pred CCcccccceEEE--echhH---HHHhhhcC-CCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHH-
Q psy15212 105 KIPKFFNGFCSI--QDAAA---QLAAPLLD-IRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLK- 176 (329)
Q Consensus 105 ~~~~~~~G~~~~--Qd~~s---~l~~~~l~-~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~- 176 (329)
+...|.+|-+.. .|+-. .++-..+. ++.-++||-+|-|-|--.-.+.+.-+ .+|+-+|+++++++.++++..
T Consensus 256 d~rLYldG~LQfsTrDe~RYhEsLV~pals~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vl 335 (508)
T COG4262 256 DLRLYLDGGLQFSTRDEYRYHESLVYPALSSVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVL 335 (508)
T ss_pred ceEEEEcCceeeeechhhhhhheeeecccccccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHh
Confidence 455666665433 33332 22222222 34456899999999977777776433 799999999999999996533
Q ss_pred -HcC---C---ceEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHH
Q psy15212 177 -RLN---L---KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKK 249 (329)
Q Consensus 177 -~~g---~---~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~ 249 (329)
..+ . .++++..|+.++- .. ....||.||+|-|--.+ |.+. ++.+
T Consensus 336 r~~N~~sf~dpRv~Vv~dDAf~wl----------------r~-a~~~fD~vIVDl~DP~t------ps~~------rlYS 386 (508)
T COG4262 336 RALNQGSFSDPRVTVVNDDAFQWL----------------RT-AADMFDVVIVDLPDPST------PSIG------RLYS 386 (508)
T ss_pred hhhccCCccCCeeEEEeccHHHHH----------------Hh-hcccccEEEEeCCCCCC------cchh------hhhh
Confidence 221 1 1788999988764 11 23589999999985422 2111 1111
Q ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEcCC-CCccccHHHHHHHHhhCCCcEEec
Q psy15212 250 LSKYSCKILNNLWKMLKPGGKLLFVTCS-LWFEESEEQAIIFSKNHKDSIRLN 301 (329)
Q Consensus 250 l~~~q~~lL~~a~~~LkpgG~lvysTCS-~~~~Ene~vv~~~l~~~~~~~~~~ 301 (329)
.++-..+.+.|+++|.+|.-.-| +...+--.-|..-+++. ++...|
T Consensus 387 -----~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~A-G~~~~P 433 (508)
T COG4262 387 -----VEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKSA-GYRVWP 433 (508)
T ss_pred -----HHHHHHHHHhcCcCceEEEecCCCccCCceeeeehhHHHhC-cceeee
Confidence 23455566789999988865433 33434444455555553 344333
No 262
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.96 E-value=0.0052 Score=58.35 Aligned_cols=95 Identities=18% Similarity=0.313 Sum_probs=65.3
Q ss_pred CCCCCCeEEeecCC-CchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccc
Q psy15212 129 DIRSGMYVLDACSA-PGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 129 ~~~~g~~VLDlcag-~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
+++||++|+=.|+| -|..++++|+.++++|+|+|++++.++.+++ +|....+...|.....
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~----lGAd~~i~~~~~~~~~-------------- 224 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKK----LGADHVINSSDSDALE-------------- 224 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHH----hCCcEEEEcCCchhhH--------------
Confidence 47899998888776 4567788888778999999999999876554 5554222211222211
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
. ..+.||.||.-.| . .-+..++++|++||+++..
T Consensus 225 --~--~~~~~d~ii~tv~-~----------------------------~~~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 225 --A--VKEIADAIIDTVG-P----------------------------ATLEPSLKALRRGGTLVLV 258 (339)
T ss_pred --H--hHhhCcEEEECCC-h----------------------------hhHHHHHHHHhcCCEEEEE
Confidence 0 1234999998666 3 2367788889999998864
No 263
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.91 E-value=0.0029 Score=52.52 Aligned_cols=49 Identities=18% Similarity=0.273 Sum_probs=44.1
Q ss_pred CCCCeEEeecCCCchHHHHHHH-----hCCCEEEEEeCChhHHHHHHHHHHHcC
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLE-----IADIKLISVDNNLSRLNMISENLKRLN 179 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~-----~~~~~v~avD~~~~rl~~l~~n~~~~g 179 (329)
.+...|+|+|||-|..+..++. ..+.+|+++|.++..++.+..+.++.+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~ 77 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG 77 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc
Confidence 6678999999999999999998 434799999999999999999998887
No 264
>KOG3178|consensus
Probab=96.71 E-value=0.013 Score=55.35 Aligned_cols=103 Identities=23% Similarity=0.291 Sum_probs=77.7
Q ss_pred hhcCCCCC----CeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhh
Q psy15212 126 PLLDIRSG----MYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDI 201 (329)
Q Consensus 126 ~~l~~~~g----~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~ 201 (329)
.++....| ...+|+|+|.|..+-++....+ +|-+++.+..-+-....++. .| |+.+.+|+..-.
T Consensus 167 ~il~~~~Gf~~v~~avDvGgGiG~v~k~ll~~fp-~ik~infdlp~v~~~a~~~~-~g--V~~v~gdmfq~~-------- 234 (342)
T KOG3178|consen 167 KILEVYTGFKGVNVAVDVGGGIGRVLKNLLSKYP-HIKGINFDLPFVLAAAPYLA-PG--VEHVAGDMFQDT-------- 234 (342)
T ss_pred hhhhhhcccccCceEEEcCCcHhHHHHHHHHhCC-CCceeecCHHHHHhhhhhhc-CC--cceecccccccC--------
Confidence 34444445 7899999999999999998666 79999999988888888776 55 666777776532
Q ss_pred cccccccccccCCCCCCEEEEccCCccccccccCCCCcc---cCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 202 NKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW---LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 202 ~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~---~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
.+-|+|++ +| .|+.++. .++|+++++.|+|||.++..-+
T Consensus 235 -------------P~~daI~m----------------kWiLhdwtDedc-------vkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 235 -------------PKGDAIWM----------------KWILHDWTDEDC-------VKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred -------------CCcCeEEE----------------EeecccCChHHH-------HHHHHHHHHhCCCCCEEEEEec
Confidence 23457764 33 3566664 4689999999999999998766
No 265
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=96.68 E-value=0.022 Score=45.18 Aligned_cols=104 Identities=22% Similarity=0.313 Sum_probs=68.2
Q ss_pred EEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccc--cchhhhhhhhccccccccc
Q psy15212 136 VLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISK--INLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 136 VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~--~~~~~~~~~~~~~~~~~~~ 210 (329)
++|+|||+|..+ .++.... ..++++|.++.++...+......+.. +.+...|... .+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 113 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLP----------------- 113 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCC-----------------
Confidence 999999999877 5554444 38999999999999855554432222 4666666554 22
Q ss_pred ccCC-CCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCcc
Q psy15212 211 FYKN-KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFE 281 (329)
Q Consensus 211 ~~~~-~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~ 281 (329)
+.. ..||.+....... +. . ....+..+.+.++|+|.+++++......
T Consensus 114 -~~~~~~~d~~~~~~~~~------------~~-~----------~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 161 (257)
T COG0500 114 -FEDSASFDLVISLLVLH------------LL-P----------PAKALRELLRVLKPGGRLVLSDLLRDGL 161 (257)
T ss_pred -CCCCCceeEEeeeeehh------------cC-C----------HHHHHHHHHHhcCCCcEEEEEeccCCCC
Confidence 122 3788884322111 00 0 3457888888999999999987765443
No 266
>KOG3045|consensus
Probab=96.65 E-value=0.037 Score=50.36 Aligned_cols=84 Identities=18% Similarity=0.282 Sum_probs=60.7
Q ss_pred CCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFY 212 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~ 212 (329)
...|-|+|||-+-.+. .....|.++|+.+ +.-+++.+|+++.+ +
T Consensus 181 ~~vIaD~GCGEakiA~----~~~~kV~SfDL~a--------------~~~~V~~cDm~~vP------------------l 224 (325)
T KOG3045|consen 181 NIVIADFGCGEAKIAS----SERHKVHSFDLVA--------------VNERVIACDMRNVP------------------L 224 (325)
T ss_pred ceEEEecccchhhhhh----ccccceeeeeeec--------------CCCceeeccccCCc------------------C
Confidence 4578999999986554 2225899999732 22468889999977 4
Q ss_pred CCCCCCEEEEccCC-ccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 213 KNKYFDRILADLPC-TGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 213 ~~~~fD~Vl~D~PC-sg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
.+++.|++++ | |=+|+ -...++++|.++|++||.+.++--
T Consensus 225 ~d~svDvaV~---CLSLMgt---------------------n~~df~kEa~RiLk~gG~l~IAEv 265 (325)
T KOG3045|consen 225 EDESVDVAVF---CLSLMGT---------------------NLADFIKEANRILKPGGLLYIAEV 265 (325)
T ss_pred ccCcccEEEe---eHhhhcc---------------------cHHHHHHHHHHHhccCceEEEEeh
Confidence 6789999885 4 22222 134689999999999999888753
No 267
>KOG3115|consensus
Probab=96.59 E-value=0.0068 Score=53.09 Aligned_cols=137 Identities=16% Similarity=0.213 Sum_probs=82.1
Q ss_pred CCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcC-------Cc-eEEEecCccccchhhhhhhhcc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLN-------LK-ATLILSDISKINLKKLYIDINK 203 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g-------~~-v~~~~~D~~~~~~~~~~~~~~~ 203 (329)
.-.+.|+|||-||....++.+.+ -.|+|.|+..+-.+..+++++.++ .+ +.+...++..+- +
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~l-p-------- 131 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFL-P-------- 131 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhc-c--------
Confidence 34789999999999999998888 789999998888888888877665 33 455555555432 1
Q ss_pred cccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCcccc
Q psy15212 204 KTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEES 283 (329)
Q Consensus 204 ~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~En 283 (329)
.++..+..+..+.=-| +|.-+-.....+ -.+..++.+-.-+|++||.++++|-- .|-
T Consensus 132 ------n~f~kgqLskmff~fp---------dpHfk~~khk~r-----ii~~~l~~eyay~l~~gg~~ytitDv---~el 188 (249)
T KOG3115|consen 132 ------NFFEKGQLSKMFFLFP---------DPHFKARKHKWR-----IITSTLLSEYAYVLREGGILYTITDV---KEL 188 (249)
T ss_pred ------chhhhcccccceeecC---------ChhHhhhhccce-----eechhHHHHHHhhhhcCceEEEEeeH---HHH
Confidence 1122222222221111 111110111111 12345677777889999999988742 233
Q ss_pred HHHHHHHHhhCCCcEEec
Q psy15212 284 EEQAIIFSKNHKDSIRLN 301 (329)
Q Consensus 284 e~vv~~~l~~~~~~~~~~ 301 (329)
-+-....+++||-|+.+.
T Consensus 189 h~wm~~~~e~hplfe~lt 206 (249)
T KOG3115|consen 189 HEWMVKHLEEHPLFERLT 206 (249)
T ss_pred HHHHHHHHHhCcHhhhcc
Confidence 333444567787776554
No 268
>KOG2078|consensus
Probab=96.51 E-value=0.0014 Score=63.05 Aligned_cols=63 Identities=14% Similarity=0.157 Sum_probs=56.4
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc---eEEEecCccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK---ATLILSDISKIN 193 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~---v~~~~~D~~~~~ 193 (329)
.++|+.|-|+|||-|-.++.++... .+|+|+|.++++++.++.|+..+.+. ++++++|+..+-
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK~-crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Fl 312 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKKG-CRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFL 312 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhcC-cEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHh
Confidence 4689999999999999999998754 69999999999999999999988885 789999987753
No 269
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.51 E-value=0.0041 Score=61.34 Aligned_cols=101 Identities=20% Similarity=0.375 Sum_probs=58.9
Q ss_pred eEEeecCCCchHHHHHHHhCCCEEEEE---eCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccccc
Q psy15212 135 YVLDACSAPGGKTCHLLEIADIKLISV---DNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRF 211 (329)
Q Consensus 135 ~VLDlcag~G~kt~~la~~~~~~v~av---D~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 211 (329)
.+||+|||.|+++.+|.++ +..++++ |..+..++.+ -+-|+...+-..-...++
T Consensus 120 ~~LDvGcG~aSF~a~l~~r-~V~t~s~a~~d~~~~qvqfa----leRGvpa~~~~~~s~rLP------------------ 176 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLER-NVTTMSFAPNDEHEAQVQFA----LERGVPAMIGVLGSQRLP------------------ 176 (506)
T ss_pred EEEeccceeehhHHHHhhC-CceEEEcccccCCchhhhhh----hhcCcchhhhhhcccccc------------------
Confidence 6999999999999999975 2233332 2222222222 223555222111112232
Q ss_pred cCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCC
Q psy15212 212 YKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLW 279 (329)
Q Consensus 212 ~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~ 279 (329)
+.++.||.|= ||.-.+ .|.. .+ --+|-+.-++|+|||++|+|.--+.
T Consensus 177 fp~~~fDmvH----csrc~i-------~W~~--~~--------g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 177 FPSNAFDMVH----CSRCLI-------PWHP--ND--------GFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred CCccchhhhh----cccccc-------cchh--cc--------cceeehhhhhhccCceEEecCCccc
Confidence 3678999996 443322 2321 11 1257778889999999999976665
No 270
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.45 E-value=0.009 Score=56.52 Aligned_cols=79 Identities=16% Similarity=0.246 Sum_probs=58.2
Q ss_pred EEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccccccCCC
Q psy15212 136 VLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNK 215 (329)
Q Consensus 136 VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (329)
|+|++||.||.+.-+-+..--.+.|+|+++..++..+.|... .++.+|..++... .-.
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~-----~~~~~Di~~~~~~-----------------~~~ 58 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN-----KVPFGDITKISPS-----------------DIP 58 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC-----CCCccChhhhhhh-----------------hCC
Confidence 689999999999888753224677899999999999988642 3445777765410 113
Q ss_pred CCCEEEEccCCccccccccCC
Q psy15212 216 YFDRILADLPCTGSGVVRRNP 236 (329)
Q Consensus 216 ~fD~Vl~D~PCsg~G~~~~~p 236 (329)
.+|+++.-|||.+....++..
T Consensus 59 ~~dvl~gg~PCq~fS~ag~~~ 79 (315)
T TIGR00675 59 DFDILLGGFPCQPFSIAGKRK 79 (315)
T ss_pred CcCEEEecCCCcccchhcccC
Confidence 589999999998887765543
No 271
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.36 E-value=0.019 Score=53.12 Aligned_cols=102 Identities=20% Similarity=0.234 Sum_probs=61.9
Q ss_pred CeEEeecCCCchHHHHHHH-h-C-CCEEEEEeCChhHHHHHHHHHH-HcCCc--eEEEecCccccchhhhhhhhcccccc
Q psy15212 134 MYVLDACSAPGGKTCHLLE-I-A-DIKLISVDNNLSRLNMISENLK-RLNLK--ATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 134 ~~VLDlcag~G~kt~~la~-~-~-~~~v~avD~~~~rl~~l~~n~~-~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
.+|+=+|+||=-.|..+.. . + +..|.++|+++.+.+.+++.++ ..|+. +.++.+|.....
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~-------------- 187 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVT-------------- 187 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG---------------
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccc--------------
Confidence 4999999999877766554 2 2 2689999999999999999888 45553 789999987654
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
..-..||.|++-+==. . +.+ .-.++|++..+.++||..++|=
T Consensus 188 ----~dl~~~DvV~lAalVg------~--------~~e-------~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 188 ----YDLKEYDVVFLAALVG------M--------DAE-------PKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp ----GG----SEEEE-TT-S-------------------------SHHHHHHHHHHHS-TTSEEEEE
T ss_pred ----cccccCCEEEEhhhcc------c--------ccc-------hHHHHHHHHHhhCCCCcEEEEe
Confidence 1125799999743211 0 000 1246899999999999999875
No 272
>PRK11524 putative methyltransferase; Provisional
Probab=96.33 E-value=0.0095 Score=55.47 Aligned_cols=86 Identities=16% Similarity=0.165 Sum_probs=51.8
Q ss_pred eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHH
Q psy15212 182 ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNL 261 (329)
Q Consensus 182 v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a 261 (329)
.+++++|+.+.. ..+.+++||+|++|||+.. |.-..+..-.|. .........+++..+
T Consensus 9 ~~i~~gD~~~~l----------------~~l~~~siDlIitDPPY~~-~~~~~~~~~~~~-----~~~~~~~l~~~l~~~ 66 (284)
T PRK11524 9 KTIIHGDALTEL----------------KKIPSESVDLIFADPPYNI-GKNFDGLIEAWK-----EDLFIDWLYEWIDEC 66 (284)
T ss_pred CEEEeccHHHHH----------------HhcccCcccEEEECCCccc-cccccccccccc-----HHHHHHHHHHHHHHH
Confidence 468888988753 1235678999999999953 110001111121 223334456889999
Q ss_pred HhcCCCCCEEEEEcCCCCccccHHHHHHHHhh
Q psy15212 262 WKMLKPGGKLLFVTCSLWFEESEEQAIIFSKN 293 (329)
Q Consensus 262 ~~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~ 293 (329)
.++|||||.++.. |+.. ....+..+++.
T Consensus 67 ~rvLK~~G~i~i~-~~~~---~~~~~~~~~~~ 94 (284)
T PRK11524 67 HRVLKKQGTMYIM-NSTE---NMPFIDLYCRK 94 (284)
T ss_pred HHHhCCCcEEEEE-cCch---hhhHHHHHHhc
Confidence 9999999998875 4432 22334555543
No 273
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=96.33 E-value=0.0073 Score=57.45 Aligned_cols=83 Identities=17% Similarity=0.295 Sum_probs=61.8
Q ss_pred CeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccccccC
Q psy15212 134 MYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYK 213 (329)
Q Consensus 134 ~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (329)
-+++|+|||-||..+-+.+..---+.++|+++..++..+.|... ..+...|........ ..
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~----~~~~~~di~~~~~~~---------------~~ 64 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH----GDIILGDIKELDGEA---------------LR 64 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC----CceeechHhhcChhh---------------cc
Confidence 47999999999999777653225889999999999999998764 345556666544100 11
Q ss_pred CCCCCEEEEccCCccccccccC
Q psy15212 214 NKYFDRILADLPCTGSGVVRRN 235 (329)
Q Consensus 214 ~~~fD~Vl~D~PCsg~G~~~~~ 235 (329)
...+|+|+--|||-+..+..+.
T Consensus 65 ~~~~DvligGpPCQ~FS~aG~r 86 (328)
T COG0270 65 KSDVDVLIGGPPCQDFSIAGKR 86 (328)
T ss_pred ccCCCEEEeCCCCcchhhcCcc
Confidence 1179999999999988887665
No 274
>PRK11524 putative methyltransferase; Provisional
Probab=96.27 E-value=0.0082 Score=55.91 Aligned_cols=46 Identities=20% Similarity=0.149 Sum_probs=39.3
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHH
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKR 177 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~ 177 (329)
.+|+.|||.++|+|..++++. .++-+.+|+|++++-++.++++++.
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~-~lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAK-ASGRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHH-HcCCCEEEEeCCHHHHHHHHHHHHh
Confidence 689999999999997665544 5667999999999999999999864
No 275
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=96.19 E-value=0.021 Score=52.97 Aligned_cols=45 Identities=24% Similarity=0.192 Sum_probs=37.6
Q ss_pred CeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHc
Q psy15212 134 MYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRL 178 (329)
Q Consensus 134 ~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~ 178 (329)
.+|||+|||||.-+..+.+..+ .+++++|.|+.+++..+..++..
T Consensus 35 ~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~ 81 (274)
T PF09243_consen 35 RSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG 81 (274)
T ss_pred ceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence 4899999999987777666655 59999999999999888877654
No 276
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.19 E-value=0.048 Score=52.28 Aligned_cols=102 Identities=21% Similarity=0.320 Sum_probs=64.6
Q ss_pred CCCCCeEEeecCCC-chHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCcc-ccchhhhhhhhccccc
Q psy15212 130 IRSGMYVLDACSAP-GGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDIS-KINLKKLYIDINKKTN 206 (329)
Q Consensus 130 ~~~g~~VLDlcag~-G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~-~~~~~~~~~~~~~~~~ 206 (329)
..++.+|+=+|||| |-.+.++++..+ .+|+++|.++.|++.+++.. +..+ +..... .... ...
T Consensus 166 ~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~---g~~~--~~~~~~~~~~~-~~~-------- 231 (350)
T COG1063 166 VRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAG---GADV--VVNPSEDDAGA-EIL-------- 231 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhC---CCeE--eecCccccHHH-HHH--------
Confidence 44555999999999 445577777777 79999999999999887643 2221 111111 1000 000
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
.......||.|+- |||. ...+..+.+++++||++++.--
T Consensus 232 ---~~t~g~g~D~vie---~~G~-------------------------~~~~~~ai~~~r~gG~v~~vGv 270 (350)
T COG1063 232 ---ELTGGRGADVVIE---AVGS-------------------------PPALDQALEALRPGGTVVVVGV 270 (350)
T ss_pred ---HHhCCCCCCEEEE---CCCC-------------------------HHHHHHHHHHhcCCCEEEEEec
Confidence 0112347999983 6652 1257888999999999988643
No 277
>KOG1269|consensus
Probab=96.18 E-value=0.0079 Score=57.88 Aligned_cols=103 Identities=22% Similarity=0.417 Sum_probs=79.1
Q ss_pred CCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhccccc
Q psy15212 129 DIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 129 ~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
...++..++|++||-|+.+..++...+..++++|.++..+.+........+++ ..++..|..+.+
T Consensus 107 ~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~------------- 173 (364)
T KOG1269|consen 107 SCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMP------------- 173 (364)
T ss_pred cCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCC-------------
Confidence 46788899999999999999999876689999999999999988888888775 445777887765
Q ss_pred ccccccCCCCCCEEEE-ccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEE
Q psy15212 207 NRFRFYKNKYFDRILA-DLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLL 272 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~-D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lv 272 (329)
+++..||.+-+ |.=|- ...-...+++.++.++|||..+
T Consensus 174 -----fedn~fd~v~~ld~~~~-----------------------~~~~~~~y~Ei~rv~kpGG~~i 212 (364)
T KOG1269|consen 174 -----FEDNTFDGVRFLEVVCH-----------------------APDLEKVYAEIYRVLKPGGLFI 212 (364)
T ss_pred -----CCccccCcEEEEeeccc-----------------------CCcHHHHHHHHhcccCCCceEE
Confidence 45678998753 22222 1112346788888899999776
No 278
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=96.08 E-value=0.046 Score=56.96 Aligned_cols=122 Identities=16% Similarity=0.170 Sum_probs=77.5
Q ss_pred CeEEeecCCCchHHHHHHHhC-------C------CEEEEEeCChhHHHHHHHHH--------------HH-----cCC-
Q psy15212 134 MYVLDACSAPGGKTCHLLEIA-------D------IKLISVDNNLSRLNMISENL--------------KR-----LNL- 180 (329)
Q Consensus 134 ~~VLDlcag~G~kt~~la~~~-------~------~~v~avD~~~~rl~~l~~n~--------------~~-----~g~- 180 (329)
=+|+|+|=|+|...+.+.+.. + -+++++|..+-..+.+.+.+ +. .|+
T Consensus 59 ~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~ 138 (662)
T PRK01747 59 FVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGCH 138 (662)
T ss_pred EEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCce
Confidence 579999999999877766433 1 38899998663333222221 11 122
Q ss_pred ---------ceEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEcc--CCccccccccCCCCcccCChhHHHH
Q psy15212 181 ---------KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADL--PCTGSGVVRRNPDIPWLRRKNDIKK 249 (329)
Q Consensus 181 ---------~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~--PCsg~G~~~~~p~~~~~~~~~~~~~ 249 (329)
..++..+|+...- ..+ ...||.|++|+ | .++|++ |
T Consensus 139 ~~~~~~~~~~l~l~~gd~~~~~----------------~~~-~~~~d~~~lD~FsP-------~~np~~-W--------- 184 (662)
T PRK01747 139 RLLFDDGRVTLDLWFGDANELL----------------PQL-DARADAWFLDGFAP-------AKNPDM-W--------- 184 (662)
T ss_pred EEEecCCcEEEEEEecCHHHHH----------------Hhc-cccccEEEeCCCCC-------ccChhh-c---------
Confidence 2345667776532 111 24699999996 4 356775 3
Q ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHHHHHhhCCCcEEec
Q psy15212 250 LSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLN 301 (329)
Q Consensus 250 l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~~~~~~~~~ 301 (329)
..++++...+++++||+++-.|++ ..|..-|... +|++..
T Consensus 185 ----~~~~~~~l~~~~~~~~~~~t~t~a-------~~vr~~l~~~-GF~v~~ 224 (662)
T PRK01747 185 ----SPNLFNALARLARPGATLATFTSA-------GFVRRGLQEA-GFTVRK 224 (662)
T ss_pred ----cHHHHHHHHHHhCCCCEEEEeehH-------HHHHHHHHHc-CCeeee
Confidence 246788899999999999844443 5677777765 665543
No 279
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=96.07 E-value=0.021 Score=52.38 Aligned_cols=78 Identities=17% Similarity=0.177 Sum_probs=59.6
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
.|..|+=+| ---.|..++.+.+ -+|..+|+++..++-.++-++.+|++ ++.+..|.+++- +
T Consensus 152 ~gK~I~vvG--DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~pl-p------------- 215 (354)
T COG1568 152 EGKEIFVVG--DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPL-P------------- 215 (354)
T ss_pred CCCeEEEEc--CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccC-h-------------
Confidence 356788887 3333333333444 69999999999999999999999998 999999999864 1
Q ss_pred ccccCCCCCCEEEEccCCc
Q psy15212 209 FRFYKNKYFDRILADLPCT 227 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCs 227 (329)
....++||+++.|||.+
T Consensus 216 --e~~~~kFDvfiTDPpeT 232 (354)
T COG1568 216 --EDLKRKFDVFITDPPET 232 (354)
T ss_pred --HHHHhhCCeeecCchhh
Confidence 11236899999999966
No 280
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=95.93 E-value=0.014 Score=51.58 Aligned_cols=43 Identities=14% Similarity=0.173 Sum_probs=32.2
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHH
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISE 173 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~ 173 (329)
-.+|+.|||.+||+|..+.++. .++-+.+++|+++.-++.+++
T Consensus 189 t~~gdiVlDpF~GSGTT~~aa~-~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 189 TNPGDIVLDPFAGSGTTAVAAE-ELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp S-TT-EEEETT-TTTHHHHHHH-HTT-EEEEEESSHHHHHHHHH
T ss_pred hccceeeehhhhccChHHHHHH-HcCCeEEEEeCCHHHHHHhcC
Confidence 4679999999999997665555 466699999999999988764
No 281
>KOG2782|consensus
Probab=95.74 E-value=0.0075 Score=53.36 Aligned_cols=97 Identities=23% Similarity=0.265 Sum_probs=67.9
Q ss_pred HhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCC-ceEEEecCccccchhhhhhhh
Q psy15212 124 AAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNL-KATLILSDISKINLKKLYIDI 201 (329)
Q Consensus 124 ~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~-~v~~~~~D~~~~~~~~~~~~~ 201 (329)
+...|.|.+|...+||--|.||.|..+.+... .+++|.|.+|-.-+.++......-- ....+.+.+..+. ++--+
T Consensus 35 vl~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~el~~~~l~a~Lg~Fs~~~--~l~~~- 111 (303)
T KOG2782|consen 35 VLDILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSDELMHPTLKAVLGNFSYIK--SLIAD- 111 (303)
T ss_pred HHHHcCCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhhHhhcchhHHHHHhhhHHHH--HHHHH-
Confidence 45567899999999999999999999999877 7999999999988887777643211 1222333333321 11000
Q ss_pred cccccccccccCCCCCCEEEEccCCccccc
Q psy15212 202 NKKTNNRFRFYKNKYFDRILADLPCTGSGV 231 (329)
Q Consensus 202 ~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~ 231 (329)
....+..+|.||+|--||++-+
T Consensus 112 --------~gl~~~~vDGiLmDlGcSSMQ~ 133 (303)
T KOG2782|consen 112 --------TGLLDVGVDGILMDLGCSSMQV 133 (303)
T ss_pred --------hCCCcCCcceEEeecCcccccc
Confidence 0124578999999999998743
No 282
>PRK13699 putative methylase; Provisional
Probab=95.63 E-value=0.027 Score=50.71 Aligned_cols=48 Identities=15% Similarity=0.149 Sum_probs=40.2
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRL 178 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~ 178 (329)
-.+|+.|||.+||+|+.+.++. .++...+|+|+++.-.+.+.++++..
T Consensus 161 s~~g~~vlDpf~Gsgtt~~aa~-~~~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVAAL-QSGRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHHHH-HcCCCEEEEecCHHHHHHHHHHHHHH
Confidence 4689999999999997666555 45668999999999999999988764
No 283
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.52 E-value=0.13 Score=51.90 Aligned_cols=48 Identities=8% Similarity=-0.021 Sum_probs=38.8
Q ss_pred CCCCCeEEeecCCCch-HHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 130 IRSGMYVLDACSAPGG-KTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~-kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
..++++|+=+|||+=| .++..|..+|+.|+++|+++.+++.+++ +|.+
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes----lGA~ 210 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES----MGAE 210 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCCe
Confidence 5679999999999865 4556677788899999999999887665 5765
No 284
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=95.39 E-value=0.065 Score=48.67 Aligned_cols=62 Identities=15% Similarity=0.057 Sum_probs=47.2
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCcccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKI 192 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~ 192 (329)
.+.++|+|+|||-=-.++......+ ..++|.|++...++.+..-+..+|....+...|...-
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~ 166 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSD 166 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTS
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeecc
Confidence 3367999999999888876665443 6999999999999999999999999888888887654
No 285
>PRK10458 DNA cytosine methylase; Provisional
Probab=95.21 E-value=0.073 Score=53.02 Aligned_cols=99 Identities=16% Similarity=0.158 Sum_probs=59.9
Q ss_pred CCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhh-hhhcccccccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLY-IDINKKTNNRFRF 211 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~-~~~~~~~~~~~~~ 211 (329)
.-+++|++||.||.+.-+-....-.|.++|+++...+.-+.|.... -...++..|...+...... +..+.. -..+.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~-p~~~~~~~DI~~i~~~~~~~~~~~~~-~~~~~- 164 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCD-PATHRFNEDIRDITLSHKEGVSDEEA-AEHIR- 164 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCC-CccceeccChhhCccccccccchhhh-hhhhh-
Confidence 4589999999999999886542247799999999999988885211 1134555666655310000 000000 00000
Q ss_pred cCCCCCCEEEEccCCcccccccc
Q psy15212 212 YKNKYFDRILADLPCTGSGVVRR 234 (329)
Q Consensus 212 ~~~~~fD~Vl~D~PCsg~G~~~~ 234 (329)
..-..+|+++.-|||.+..+.++
T Consensus 165 ~~~p~~DvL~gGpPCQ~FS~AG~ 187 (467)
T PRK10458 165 QHIPDHDVLLAGFPCQPFSLAGV 187 (467)
T ss_pred ccCCCCCEEEEcCCCCccchhcc
Confidence 00125899999999987766543
No 286
>PRK13699 putative methylase; Provisional
Probab=95.15 E-value=0.034 Score=50.11 Aligned_cols=73 Identities=18% Similarity=0.233 Sum_probs=43.8
Q ss_pred EEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHH
Q psy15212 183 TLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLW 262 (329)
Q Consensus 183 ~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~ 262 (329)
+++++|+.+.- ..++++++|+|+.|||+.- |.-.+... .+ ... ...+...+.+.++.
T Consensus 3 ~l~~gD~le~l----------------~~lpd~SVDLIiTDPPY~i-~~~~~~~~-~~--~~~---~~~ew~~~~l~E~~ 59 (227)
T PRK13699 3 RFILGNCIDVM----------------ARFPDNAVDFILTDPPYLV-GFRDRQGR-TI--AGD---KTDEWLQPACNEMY 59 (227)
T ss_pred eEEechHHHHH----------------HhCCccccceEEeCCCccc-ccccCCCc-cc--ccc---cHHHHHHHHHHHHH
Confidence 56778877642 2246789999999999952 21111100 00 001 12233457889999
Q ss_pred hcCCCCCEEEEEcCCCC
Q psy15212 263 KMLKPGGKLLFVTCSLW 279 (329)
Q Consensus 263 ~~LkpgG~lvysTCS~~ 279 (329)
++|||||.++. .|+..
T Consensus 60 RVLKpgg~l~i-f~~~~ 75 (227)
T PRK13699 60 RVLKKDALMVS-FYGWN 75 (227)
T ss_pred HHcCCCCEEEE-Eeccc
Confidence 99999987753 45543
No 287
>PHA01634 hypothetical protein
Probab=94.92 E-value=0.07 Score=43.44 Aligned_cols=49 Identities=8% Similarity=-0.050 Sum_probs=42.7
Q ss_pred CCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCC
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~ 180 (329)
.|.+|+|+||+-|.-++..+-....+|+|++.+++..+..++|++-+.+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI 76 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNI 76 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhhee
Confidence 4789999999999999998865447999999999999999999987644
No 288
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=94.88 E-value=0.24 Score=46.96 Aligned_cols=49 Identities=12% Similarity=0.168 Sum_probs=33.5
Q ss_pred CCCCCCeEEeecCCC-chHHHHHHHhCCC-EEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 129 DIRSGMYVLDACSAP-GGKTCHLLEIADI-KLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 129 ~~~~g~~VLDlcag~-G~kt~~la~~~~~-~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
...+|++||=.|||+ |..++++|+.++. +|+++|.++++++.++ ++|..
T Consensus 166 ~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~----~lGa~ 216 (343)
T PRK09880 166 GDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAR----EMGAD 216 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHH----HcCCc
Confidence 355789998877532 3334555666664 7999999999987664 45754
No 289
>KOG3987|consensus
Probab=94.84 E-value=0.009 Score=52.54 Aligned_cols=92 Identities=16% Similarity=0.268 Sum_probs=59.1
Q ss_pred CeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccccccC
Q psy15212 134 MYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYK 213 (329)
Q Consensus 134 ~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (329)
.++||+|||.|-.|.+++-... +|+|-|.|..|..+++ +.+..+-. ..+-.+ .
T Consensus 114 ~~lLDlGAGdGeit~~m~p~fe-evyATElS~tMr~rL~----kk~ynVl~-~~ew~~---------------------t 166 (288)
T KOG3987|consen 114 VTLLDLGAGDGEITLRMAPTFE-EVYATELSWTMRDRLK----KKNYNVLT-EIEWLQ---------------------T 166 (288)
T ss_pred eeEEeccCCCcchhhhhcchHH-HHHHHHhhHHHHHHHh----hcCCceee-ehhhhh---------------------c
Confidence 5899999999999999985444 8999999888876544 44444211 011111 1
Q ss_pred CCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCC-CCEEEEE
Q psy15212 214 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKP-GGKLLFV 274 (329)
Q Consensus 214 ~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~Lkp-gG~lvys 274 (329)
+-+||+|+| ..++.|+-+ ..++|+.....|+| .|+++.+
T Consensus 167 ~~k~dli~c------lNlLDRc~~----------------p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 167 DVKLDLILC------LNLLDRCFD----------------PFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred CceeehHHH------HHHHHhhcC----------------hHHHHHHHHHHhccCCCcEEEE
Confidence 236888863 222222211 24578888888888 8887765
No 290
>KOG2940|consensus
Probab=94.80 E-value=0.033 Score=49.86 Aligned_cols=112 Identities=20% Similarity=0.275 Sum_probs=73.3
Q ss_pred HHHhhhcCCC-CCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhh
Q psy15212 122 QLAAPLLDIR-SGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYID 200 (329)
Q Consensus 122 ~l~~~~l~~~-~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~ 200 (329)
.++-.+.+.+ ....++|+||+-|...-|+....-.+++-+|.|..+++.++.-- ..++.+..+++|-..++
T Consensus 61 rlaDrvfD~kk~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~q-dp~i~~~~~v~DEE~Ld------- 132 (325)
T KOG2940|consen 61 RLADRVFDCKKSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQ-DPSIETSYFVGDEEFLD------- 132 (325)
T ss_pred HHHHHHHHHhhhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccC-CCceEEEEEecchhccc-------
Confidence 3444444443 35689999999999999987643379999999999998765432 24555566777766655
Q ss_pred hcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 201 INKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 201 ~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
+.+++||+||. +.+. .|. ..+. .-...+...|||+|.++-|
T Consensus 133 -----------f~ens~DLiis-----Slsl-------HW~------NdLP----g~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 133 -----------FKENSVDLIIS-----SLSL-------HWT------NDLP----GSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred -----------ccccchhhhhh-----hhhh-------hhh------ccCc----hHHHHHHHhcCCCccchhH
Confidence 46789999982 2222 232 1111 1233455678999988743
No 291
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=94.67 E-value=0.19 Score=47.55 Aligned_cols=50 Identities=14% Similarity=0.077 Sum_probs=33.1
Q ss_pred cCCCCCCeEEeecCCC-chHHHHHHHhCCC-EEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 128 LDIRSGMYVLDACSAP-GGKTCHLLEIADI-KLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 128 l~~~~g~~VLDlcag~-G~kt~~la~~~~~-~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
...++|++||=.|+|+ |..+.++|+.++. .|++++.++.+++.++ .+|..
T Consensus 156 ~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~----~~Ga~ 207 (347)
T PRK10309 156 AQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAK----SLGAM 207 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH----HcCCc
Confidence 3467889988886533 2233455666665 4899999999887653 45653
No 292
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=94.62 E-value=0.15 Score=49.31 Aligned_cols=48 Identities=21% Similarity=0.296 Sum_probs=39.6
Q ss_pred hcCCCCCCeEEeecCCC-chHHHHHHHhCCC-EEEEEeCChhHHHHHHHH
Q psy15212 127 LLDIRSGMYVLDACSAP-GGKTCHLLEIADI-KLISVDNNLSRLNMISEN 174 (329)
Q Consensus 127 ~l~~~~g~~VLDlcag~-G~kt~~la~~~~~-~v~avD~~~~rl~~l~~n 174 (329)
...+.+|++||..|+|+ |..+.++|+..+. +|+++|.++++++.+++.
T Consensus 179 ~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 179 LAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred hccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 44577899999998887 7788888888884 799999999998877764
No 293
>KOG1562|consensus
Probab=94.61 E-value=0.16 Score=47.10 Aligned_cols=121 Identities=17% Similarity=0.137 Sum_probs=86.8
Q ss_pred CCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcC--C---ceEEEecCccccchhhhhhhhccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLN--L---KATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g--~---~v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
-++||=+|-|-|+..-..+.+-. +.|.-+|++..-++..++-+..+- . ++.+..+|...+-
T Consensus 122 pkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl------------- 188 (337)
T KOG1562|consen 122 PKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFL------------- 188 (337)
T ss_pred CCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHH-------------
Confidence 46899999999999887776633 689999999998888777665542 2 2788889987764
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHH
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQ 286 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~v 286 (329)
.....+.||+|++|-. +| ........|+.+.....+.||+||+++. ..|+..+
T Consensus 189 ---~~~~~~~~dVii~dss---------dp---------vgpa~~lf~~~~~~~v~~aLk~dgv~~~------q~ec~wl 241 (337)
T KOG1562|consen 189 ---EDLKENPFDVIITDSS---------DP---------VGPACALFQKPYFGLVLDALKGDGVVCT------QGECMWL 241 (337)
T ss_pred ---HHhccCCceEEEEecC---------Cc---------cchHHHHHHHHHHHHHHHhhCCCcEEEE------ecceehH
Confidence 2234578999999842 11 1234455678888888888999998863 3466666
Q ss_pred HHHHHhh
Q psy15212 287 AIIFSKN 293 (329)
Q Consensus 287 v~~~l~~ 293 (329)
-..+++.
T Consensus 242 ~~~~i~e 248 (337)
T KOG1562|consen 242 HLDYIKE 248 (337)
T ss_pred HHHHHHH
Confidence 5555553
No 294
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=94.39 E-value=0.57 Score=44.27 Aligned_cols=50 Identities=6% Similarity=-0.090 Sum_probs=35.9
Q ss_pred cCCCCCCeEEeecCCC-chHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 128 LDIRSGMYVLDACSAP-GGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 128 l~~~~g~~VLDlcag~-G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
..+++|++||=.|+|+ |..+.++|+..+.+|++++.++++++.+ +++|..
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a----~~~Ga~ 211 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLA----LALGAA 211 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHH----HHhCCc
Confidence 4678899999888643 2244556666677899999999987654 457765
No 295
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=94.26 E-value=0.18 Score=40.37 Aligned_cols=91 Identities=22% Similarity=0.392 Sum_probs=59.0
Q ss_pred CCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccccccCCCCCCEEE
Q psy15212 142 APGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRIL 221 (329)
Q Consensus 142 g~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl 221 (329)
|-|..++++|+..+.+|+++|.++.+++.++ ++|.. .++..+-.++. ..+. ....+..+|.|+
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~----~~Ga~-~~~~~~~~~~~-~~i~-----------~~~~~~~~d~vi 63 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAK----ELGAD-HVIDYSDDDFV-EQIR-----------ELTGGRGVDVVI 63 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHH----HTTES-EEEETTTSSHH-HHHH-----------HHTTTSSEEEEE
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHH----hhccc-ccccccccccc-cccc-----------cccccccceEEE
Confidence 3578899999998899999999999987654 56643 22222222111 0000 111235799997
Q ss_pred EccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 222 ADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 222 ~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
- |+|.+ ..+..+++++++||+++.....
T Consensus 64 d---~~g~~-------------------------~~~~~~~~~l~~~G~~v~vg~~ 91 (130)
T PF00107_consen 64 D---CVGSG-------------------------DTLQEAIKLLRPGGRIVVVGVY 91 (130)
T ss_dssp E---SSSSH-------------------------HHHHHHHHHEEEEEEEEEESST
T ss_pred E---ecCcH-------------------------HHHHHHHHHhccCCEEEEEEcc
Confidence 3 44422 3588889999999999876544
No 296
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=94.22 E-value=0.28 Score=45.16 Aligned_cols=48 Identities=15% Similarity=0.102 Sum_probs=32.9
Q ss_pred cCCCCCCeEEeecCCCchHH---HHHHHhCCC-EEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 128 LDIRSGMYVLDACSAPGGKT---CHLLEIADI-KLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 128 l~~~~g~~VLDlcag~G~kt---~~la~~~~~-~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
+...+|++||=.|+ |+.+ .++|+..+. .|+++|.++.+++.+++ +|..
T Consensus 116 ~~~~~g~~VlV~G~--G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~ 167 (280)
T TIGR03366 116 AGDLKGRRVLVVGA--GMLGLTAAAAAAAAGAARVVAADPSPDRRELALS----FGAT 167 (280)
T ss_pred ccCCCCCEEEEECC--CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCc
Confidence 34568999998865 4444 445555664 59999999998876544 5654
No 297
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=94.22 E-value=0.44 Score=40.62 Aligned_cols=124 Identities=19% Similarity=0.201 Sum_probs=70.7
Q ss_pred hhHHHHhhhcC-CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhh
Q psy15212 119 AAAQLAAPLLD-IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKL 197 (329)
Q Consensus 119 ~~s~l~~~~l~-~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~ 197 (329)
-+..++-.+++ ..++.+|+=+||=+-...+.-....+..++-.|.+..- +.+|-+ .++.-|...+. .+
T Consensus 11 T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF--------~~~~~~-~F~fyD~~~p~--~~ 79 (162)
T PF10237_consen 11 TAEFLARELLDGALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRF--------EQFGGD-EFVFYDYNEPE--EL 79 (162)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchH--------HhcCCc-ceEECCCCChh--hh
Confidence 33444444444 34567898887765544433311122588888886543 233333 35555655432 00
Q ss_pred hhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 198 YIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
+ ..+ .++||+|++|||.-. + + .+......+-.++|+++.++.+
T Consensus 80 --------~---~~l-~~~~d~vv~DPPFl~---------------~-e------c~~k~a~ti~~L~k~~~kii~~--- 122 (162)
T PF10237_consen 80 --------P---EEL-KGKFDVVVIDPPFLS---------------E-E------CLTKTAETIRLLLKPGGKIILC--- 122 (162)
T ss_pred --------h---hhc-CCCceEEEECCCCCC---------------H-H------HHHHHHHHHHHHhCccceEEEe---
Confidence 0 112 468999999999631 1 1 1223334444456778999875
Q ss_pred CCccccHHHHHHHH
Q psy15212 278 LWFEESEEQAIIFS 291 (329)
Q Consensus 278 ~~~~Ene~vv~~~l 291 (329)
.++++++.+.+.+
T Consensus 123 -Tg~~~~~~~~~ll 135 (162)
T PF10237_consen 123 -TGEEMEELIKKLL 135 (162)
T ss_pred -cHHHHHHHHHHHh
Confidence 4688999988888
No 298
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=94.20 E-value=0.22 Score=47.86 Aligned_cols=50 Identities=20% Similarity=0.161 Sum_probs=34.9
Q ss_pred cCCCCCCeEEeecCCC-chHHHHHHHhCCC-EEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 128 LDIRSGMYVLDACSAP-GGKTCHLLEIADI-KLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 128 l~~~~g~~VLDlcag~-G~kt~~la~~~~~-~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
..+++|++||=.|+|+ |..+.++|+..+. +|+++|.++.+++.++ ++|..
T Consensus 187 ~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~----~~Ga~ 238 (371)
T cd08281 187 AGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAR----ELGAT 238 (371)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHH----HcCCc
Confidence 3578899988887543 3344555666665 7999999999988764 35654
No 299
>KOG1501|consensus
Probab=94.15 E-value=0.1 Score=50.76 Aligned_cols=54 Identities=9% Similarity=0.137 Sum_probs=46.3
Q ss_pred eEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecC
Q psy15212 135 YVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSD 188 (329)
Q Consensus 135 ~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D 188 (329)
.|||+|+|+|-.+.+++..++-.|+|+++-..+.+.+++-..++|.+ +.++.-.
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkr 124 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKR 124 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccc
Confidence 59999999999988888766579999999999999999999999985 6555433
No 300
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=94.05 E-value=0.27 Score=46.88 Aligned_cols=50 Identities=18% Similarity=0.163 Sum_probs=35.2
Q ss_pred cCCCCCCeEEeecCCC-chHHHHHHHhCCC-EEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 128 LDIRSGMYVLDACSAP-GGKTCHLLEIADI-KLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 128 l~~~~g~~VLDlcag~-G~kt~~la~~~~~-~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
..+++|++||=.|+|+ |..+.++|+..+. +|+++|.++.+++.++ ++|..
T Consensus 172 ~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~----~~Ga~ 223 (358)
T TIGR03451 172 GGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAR----EFGAT 223 (358)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH----HcCCc
Confidence 3567899999886533 3344556666665 6999999999988774 45653
No 301
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=94.03 E-value=0.34 Score=46.11 Aligned_cols=48 Identities=13% Similarity=0.190 Sum_probs=33.1
Q ss_pred CCCCCeEEeecCCC-chHHHHHHHhCCCEEEEEeC---ChhHHHHHHHHHHHcCCc
Q psy15212 130 IRSGMYVLDACSAP-GGKTCHLLEIADIKLISVDN---NLSRLNMISENLKRLNLK 181 (329)
Q Consensus 130 ~~~g~~VLDlcag~-G~kt~~la~~~~~~v~avD~---~~~rl~~l~~n~~~~g~~ 181 (329)
+++|++||=.|+|+ |..+.++|+..+.+|++++. ++++++.+ +++|..
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~----~~~Ga~ 221 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIV----EELGAT 221 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHH----HHcCCE
Confidence 46789999887653 33455666666778999987 57776654 456764
No 302
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=93.93 E-value=0.34 Score=45.22 Aligned_cols=45 Identities=20% Similarity=0.284 Sum_probs=34.2
Q ss_pred CCCCCCeEEeecCC-CchHHHHHHHhCCCEEEEEeCChhHHHHHHH
Q psy15212 129 DIRSGMYVLDACSA-PGGKTCHLLEIADIKLISVDNNLSRLNMISE 173 (329)
Q Consensus 129 ~~~~g~~VLDlcag-~G~kt~~la~~~~~~v~avD~~~~rl~~l~~ 173 (329)
.+++|++||..++| .|..+.++|+..+.+|++++.++.+.+.+++
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~ 207 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE 207 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence 46788999997654 2666777777777789999999988776643
No 303
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=93.92 E-value=0.66 Score=41.79 Aligned_cols=61 Identities=18% Similarity=0.236 Sum_probs=47.5
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.|.++|=.| |+|+.+.++++.+- .+|+.++.+...++.+...+...+..+.++.+|..+..
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~ 74 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEA 74 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHH
Confidence 466788777 57788888887643 69999999998888888777766666778899988754
No 304
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=93.60 E-value=0.81 Score=43.43 Aligned_cols=50 Identities=14% Similarity=0.286 Sum_probs=37.6
Q ss_pred cCCCCCCeEEeecCCC-chHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 128 LDIRSGMYVLDACSAP-GGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 128 l~~~~g~~VLDlcag~-G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
..+++|++||=.|+|+ |..+.++|+..+.+|+++|.++++++.++ .+|..
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~----~~Ga~ 212 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMK----GFGAD 212 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH----HhCCc
Confidence 3567899999998855 55556677777778999999999987664 34654
No 305
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=93.49 E-value=0.34 Score=45.61 Aligned_cols=49 Identities=20% Similarity=0.198 Sum_probs=33.9
Q ss_pred hcCCCCCCeEEeecCCCchHHH---HHHHhCCCE-EEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 127 LLDIRSGMYVLDACSAPGGKTC---HLLEIADIK-LISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 127 ~l~~~~g~~VLDlcag~G~kt~---~la~~~~~~-v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
.+.+++|++||=.|+ |+.+. ++|+.++.+ |++++.++++.+.++ ++|..
T Consensus 158 ~~~~~~g~~vlV~G~--G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~----~~ga~ 210 (339)
T cd08239 158 RVGVSGRDTVLVVGA--GPVGLGALMLARALGAEDVIGVDPSPERLELAK----ALGAD 210 (339)
T ss_pred hcCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH----HhCCC
Confidence 345778999988864 55544 455556656 999999999877654 45653
No 306
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=93.31 E-value=0.46 Score=44.50 Aligned_cols=50 Identities=12% Similarity=0.293 Sum_probs=37.1
Q ss_pred cCCCCCCeEEeecC--CCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 128 LDIRSGMYVLDACS--APGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 128 l~~~~g~~VLDlca--g~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
..+++|++||=.|+ |-|..+.++|+..+.+|++++.++++.+.++ .+|..
T Consensus 134 ~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~----~lGa~ 185 (325)
T TIGR02825 134 CGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLK----KLGFD 185 (325)
T ss_pred hCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH----HcCCC
Confidence 45788999987774 4566667777777789999999988876663 46764
No 307
>PRK12939 short chain dehydrogenase; Provisional
Probab=93.22 E-value=1 Score=39.94 Aligned_cols=61 Identities=16% Similarity=0.126 Sum_probs=45.5
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
++.+||=.| |+|+.+.++++.+. .+|++++.++..++.+.+.++..+.++.++.+|+.+..
T Consensus 6 ~~~~vlItG-a~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~ 69 (250)
T PRK12939 6 AGKRALVTG-AARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPA 69 (250)
T ss_pred CCCEEEEeC-CCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHH
Confidence 356777554 57888888886543 58999999988888777777666656888889988753
No 308
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=93.15 E-value=0.25 Score=45.20 Aligned_cols=71 Identities=24% Similarity=0.383 Sum_probs=52.1
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
..+|..-.|+||.|||.|-++.++. -.|+|+|.-+-+ +++...|. ++-...|..++.
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr~-m~V~aVDng~ma-----~sL~dtg~-v~h~r~DGfk~~---------------- 265 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKRN-MRVYAVDNGPMA-----QSLMDTGQ-VTHLREDGFKFR---------------- 265 (358)
T ss_pred hcCCceeeecccCCCccchhhhhcc-eEEEEeccchhh-----hhhhcccc-eeeeeccCcccc----------------
Confidence 5689999999999999999998753 499999964422 23333332 667778888775
Q ss_pred cccCCCCCCEEEEccC
Q psy15212 210 RFYKNKYFDRILADLP 225 (329)
Q Consensus 210 ~~~~~~~fD~Vl~D~P 225 (329)
+ ...+.|..+||.-
T Consensus 266 P--~r~~idWmVCDmV 279 (358)
T COG2933 266 P--TRSNIDWMVCDMV 279 (358)
T ss_pred c--CCCCCceEEeehh
Confidence 1 2568999999863
No 309
>KOG1331|consensus
Probab=92.93 E-value=0.14 Score=47.24 Aligned_cols=97 Identities=25% Similarity=0.341 Sum_probs=61.4
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
.|..++|.|||.|--+.. .+ ..++++|++...+..++ +.|. ..+..+|+.+.+
T Consensus 45 ~gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak----~~~~-~~~~~ad~l~~p----------------- 98 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAK----RSGG-DNVCRADALKLP----------------- 98 (293)
T ss_pred CcceeeecccCCcccCcC----CCcceeeecchhhhhccccc----cCCC-ceeehhhhhcCC-----------------
Confidence 488999999999933211 12 57899998777665432 2222 257788988876
Q ss_pred ccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCC-EEEEE
Q psy15212 211 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG-KLLFV 274 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG-~lvys 274 (329)
+.+..||.+|. ..+ +.|..+.. .-...+++..+.|+||| .+||+
T Consensus 99 -~~~~s~d~~ls------iav------ihhlsT~~-------RR~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 99 -FREESFDAALS------IAV------IHHLSTRE-------RRERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred -CCCCccccchh------hhh------hhhhhhHH-------HHHHHHHHHHHHhcCCCceEEEE
Confidence 35678998872 111 11221211 22457888889999999 46775
No 310
>PRK07576 short chain dehydrogenase; Provisional
Probab=92.90 E-value=1.4 Score=39.96 Aligned_cols=61 Identities=8% Similarity=0.128 Sum_probs=44.7
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
++.++|-.| |+|+.+.++++.+ +..|++++.++..++.+.+.+...+..+.++..|.++..
T Consensus 8 ~~k~ilItG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~ 71 (264)
T PRK07576 8 AGKNVVVVG-GTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYA 71 (264)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHH
Confidence 466888887 4667777777643 358999999988887777677666555677888987643
No 311
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=92.86 E-value=1.5 Score=39.40 Aligned_cols=61 Identities=21% Similarity=0.222 Sum_probs=47.0
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.|.+||=.| |+|+.+..+++.+ +.+|+..+.++..++.+.+.++..|.++..+..|+.+..
T Consensus 9 ~~k~vlItG-a~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~ 72 (255)
T PRK07523 9 TGRRALVTG-SSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHD 72 (255)
T ss_pred CCCEEEEEC-CcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHH
Confidence 366888777 4678888887654 368999999998888888778776766778888987743
No 312
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.77 E-value=1.8 Score=38.37 Aligned_cols=60 Identities=13% Similarity=0.168 Sum_probs=45.3
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+.++|=.|+ +|+.+.++++.+ +.+|+.++.++...+.+...+...+..+.++..|..+..
T Consensus 7 ~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 69 (239)
T PRK07666 7 GKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYE 69 (239)
T ss_pred CCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHH
Confidence 457787774 788888887653 369999999988887777667666656778889987654
No 313
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=92.60 E-value=0.58 Score=41.01 Aligned_cols=39 Identities=15% Similarity=0.069 Sum_probs=32.8
Q ss_pred hcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCCh
Q psy15212 127 LLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNL 165 (329)
Q Consensus 127 ~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~ 165 (329)
+..+++|++|+|+--|.|.+|..++...+ |.|++.=..+
T Consensus 43 FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e 83 (238)
T COG4798 43 FAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAE 83 (238)
T ss_pred EeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchh
Confidence 44689999999999999999999998877 7888865443
No 314
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=92.56 E-value=0.11 Score=49.42 Aligned_cols=36 Identities=17% Similarity=0.181 Sum_probs=23.7
Q ss_pred CeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHH
Q psy15212 134 MYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLN 169 (329)
Q Consensus 134 ~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~ 169 (329)
..|||+|+|||.-..++-...+ ..++-++.|+..-+
T Consensus 115 qsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrk 152 (484)
T COG5459 115 QSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRK 152 (484)
T ss_pred chhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHH
Confidence 4699999999976655555444 35555666665433
No 315
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=92.56 E-value=0.91 Score=41.95 Aligned_cols=44 Identities=16% Similarity=0.038 Sum_probs=36.9
Q ss_pred CCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHH
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLK 176 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~ 176 (329)
...+||-.|||-|..+..+|.+ |-.+.|+|.|-.|+-...-.+.
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~-G~~~~gnE~S~~Mll~s~fiLn 99 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL-GYAVQGNEFSYFMLLASNFILN 99 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc-cceEEEEEchHHHHHHHHHHHc
Confidence 4568999999999999999986 6699999999999866555444
No 316
>KOG2352|consensus
Probab=92.52 E-value=0.98 Score=44.78 Aligned_cols=114 Identities=15% Similarity=0.250 Sum_probs=78.5
Q ss_pred CCCCC-eEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccc
Q psy15212 130 IRSGM-YVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 130 ~~~g~-~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
..+-+ ++|-+|||.=-.+.++-+-+--.|+.+|+|+-.++.....-.+-.-...+...|+....
T Consensus 45 ~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~--------------- 109 (482)
T KOG2352|consen 45 LSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLV--------------- 109 (482)
T ss_pred hchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecchhcc---------------
Confidence 34556 89999999988887777532269999999999998766554322122788888988765
Q ss_pred ccccCCCCCCEEEEccCCccccccccC---CCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRN---PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~---p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
++++.||.||. -|++..- .+..|. ...-...+....+++++||+.+-.||
T Consensus 110 ---fedESFdiVId------kGtlDal~~de~a~~~---------~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 110 ---FEDESFDIVID------KGTLDALFEDEDALLN---------TAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred ---CCCcceeEEEe------cCccccccCCchhhhh---------hHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 46788999883 3443321 111111 12234578889999999999988888
No 317
>PRK06139 short chain dehydrogenase; Provisional
Probab=92.51 E-value=1.2 Score=42.26 Aligned_cols=61 Identities=15% Similarity=0.235 Sum_probs=46.8
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.+..||=.|+ +|+.+.++++.+ +.+|+.++.++.+++.+.+.++..|..+.++..|..+..
T Consensus 6 ~~k~vlITGA-s~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~ 69 (330)
T PRK06139 6 HGAVVVITGA-SSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDAD 69 (330)
T ss_pred CCCEEEEcCC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHH
Confidence 3556776655 567777777654 369999999999999988888888877778888987643
No 318
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=92.44 E-value=0.26 Score=44.27 Aligned_cols=85 Identities=15% Similarity=0.104 Sum_probs=53.6
Q ss_pred CCCCeEEeecCCCchHHHHHHHh-CCCEEEEEeCChhHHHHHHHHHHHc-CCc--eEEEec-Cccccchhhhhhhhcccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEI-ADIKLISVDNNLSRLNMISENLKRL-NLK--ATLILS-DISKINLKKLYIDINKKT 205 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~-~~~~v~avD~~~~rl~~l~~n~~~~-g~~--v~~~~~-D~~~~~~~~~~~~~~~~~ 205 (329)
.++-++||+|.|.--+--.+-.+ .+-+.++.|+++..++.++.++..+ +++ ++++.. |...+- ..
T Consensus 77 ~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if-~g--------- 146 (292)
T COG3129 77 GKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIF-NG--------- 146 (292)
T ss_pred cCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccc-cc---------
Confidence 45668999987754332222211 1248899999999999999999887 665 554432 222110 00
Q ss_pred cccccccCCCCCCEEEEccCCccc
Q psy15212 206 NNRFRFYKNKYFDRILADLPCTGS 229 (329)
Q Consensus 206 ~~~~~~~~~~~fD~Vl~D~PCsg~ 229 (329)
..-..+.||.++|+||.-.+
T Consensus 147 ----iig~nE~yd~tlCNPPFh~s 166 (292)
T COG3129 147 ----IIGKNERYDATLCNPPFHDS 166 (292)
T ss_pred ----cccccceeeeEecCCCcchh
Confidence 01125789999999997543
No 319
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=92.43 E-value=1.9 Score=38.58 Aligned_cols=60 Identities=17% Similarity=0.153 Sum_probs=44.7
Q ss_pred CCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+..+|=.| |+|+.+.++++.+- .+|+..+.++..+..+.+.+...+..+..+..|..+..
T Consensus 9 ~k~~lItG-as~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~ 71 (254)
T PRK08085 9 GKNILITG-SAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQ 71 (254)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHH
Confidence 55777777 45678888876543 69999999988888887777766655677788887653
No 320
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=92.32 E-value=0.51 Score=41.08 Aligned_cols=78 Identities=18% Similarity=0.256 Sum_probs=40.4
Q ss_pred CCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHHHHHhhCC
Q psy15212 216 YFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295 (329)
Q Consensus 216 ~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~~~ 295 (329)
..|.+++-.|.-..+ ...|+..+ -...++...+.+++ |.+|.--+|+.|.-.++.+..++++..
T Consensus 76 ~adv~~I~VpTP~~~--~~~~Dls~-------------v~~a~~~i~~~l~~-~~lvV~~STvppGtt~~~~~~ile~~~ 139 (185)
T PF03721_consen 76 DADVVFICVPTPSDE--DGSPDLSY-------------VESAIESIAPVLRP-GDLVVIESTVPPGTTEELLKPILEKRS 139 (185)
T ss_dssp H-SEEEE----EBET--TTSBETHH-------------HHHHHHHHHHHHCS-CEEEEESSSSSTTHHHHHHHHHHHHHC
T ss_pred ccceEEEecCCCccc--cCCccHHH-------------HHHHHHHHHHHHhh-cceEEEccEEEEeeehHhhhhhhhhhc
Confidence 578888777643222 22333222 12345566666777 455555688899999989999998754
Q ss_pred ----CcEEecCCCcccCC
Q psy15212 296 ----DSIRLNSPGQLLPT 309 (329)
Q Consensus 296 ----~~~~~~~~~~~~p~ 309 (329)
++.+.-.|-++.|+
T Consensus 140 ~~~~~f~la~~PErl~~G 157 (185)
T PF03721_consen 140 GKKEDFHLAYSPERLREG 157 (185)
T ss_dssp CTTTCEEEEE------TT
T ss_pred ccccCCeEEECCCccCCC
Confidence 34444444444444
No 321
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=92.27 E-value=0.78 Score=43.73 Aligned_cols=51 Identities=12% Similarity=0.254 Sum_probs=38.5
Q ss_pred cCCCCCCeEEeecC--CCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 128 LDIRSGMYVLDACS--APGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 128 l~~~~g~~VLDlca--g~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
..+++|++||=.|+ |-|..+.++|+..+.+|++++.++.+.+.+++ .+|..
T Consensus 154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~---~lGa~ 206 (348)
T PLN03154 154 CSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKN---KLGFD 206 (348)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH---hcCCC
Confidence 35788999988876 36667788888888889999999888766542 35654
No 322
>PRK07109 short chain dehydrogenase; Provisional
Probab=92.25 E-value=2.4 Score=40.18 Aligned_cols=61 Identities=11% Similarity=0.141 Sum_probs=46.7
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.+..||=.| |+|+.+..+++.+ +.+|+.++.++..++.+.+.++..|.++.++.+|..+..
T Consensus 7 ~~k~vlITG-as~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~ 70 (334)
T PRK07109 7 GRQVVVITG-ASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAE 70 (334)
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHH
Confidence 355677666 4567777776644 369999999999999888888887877888889988754
No 323
>PLN02740 Alcohol dehydrogenase-like
Probab=92.21 E-value=0.93 Score=43.69 Aligned_cols=48 Identities=19% Similarity=0.166 Sum_probs=34.7
Q ss_pred cCCCCCCeEEeecCCCchHHHH---HHHhCCC-EEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 128 LDIRSGMYVLDACSAPGGKTCH---LLEIADI-KLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 128 l~~~~g~~VLDlcag~G~kt~~---la~~~~~-~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
..+++|++||=.|+ |+.+.. +|+..+. +|+++|.++.+++.+++ +|..
T Consensus 194 ~~~~~g~~VlV~G~--G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~ 245 (381)
T PLN02740 194 ANVQAGSSVAIFGL--GAVGLAVAEGARARGASKIIGVDINPEKFEKGKE----MGIT 245 (381)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH----cCCc
Confidence 45788999998875 555544 5555665 79999999999887743 5664
No 324
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=92.06 E-value=1.7 Score=38.77 Aligned_cols=60 Identities=20% Similarity=0.147 Sum_probs=46.2
Q ss_pred CCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+.+||=.| |+|+.+.++++.+. .+|++++.++...+.+...++..+..+.++.+|..+..
T Consensus 4 ~~~vlItG-~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~ 66 (258)
T PRK12429 4 GKVALVTG-AASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEE 66 (258)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHH
Confidence 45677554 57888999887643 58999999999888887777776766888889988644
No 325
>PRK05867 short chain dehydrogenase; Provisional
Probab=91.98 E-value=1.3 Score=39.70 Aligned_cols=61 Identities=13% Similarity=0.131 Sum_probs=45.8
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.|..+|=.|++ |+.+.++++.+ +.+|+.++.+...++.+.+.++..+..+..+..|..+..
T Consensus 8 ~~k~vlVtGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~ 71 (253)
T PRK05867 8 HGKRALITGAS-TGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQ 71 (253)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHH
Confidence 36688888764 56777777654 369999999999988888887776655777888987653
No 326
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=91.91 E-value=1.1 Score=44.07 Aligned_cols=43 Identities=16% Similarity=0.081 Sum_probs=32.7
Q ss_pred CCCCeEEeecCCCchHHHH-HHHhCCCEEEEEeCChhHHHHHHH
Q psy15212 131 RSGMYVLDACSAPGGKTCH-LLEIADIKLISVDNNLSRLNMISE 173 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~-la~~~~~~v~avD~~~~rl~~l~~ 173 (329)
-+|++|+=+|+|+=|.... +++.+|++|+.+|+++.|+..++.
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~ 243 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM 243 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh
Confidence 4699999999998555444 445566799999999999876643
No 327
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=91.78 E-value=0.99 Score=41.97 Aligned_cols=51 Identities=18% Similarity=0.266 Sum_probs=37.2
Q ss_pred hcCCCCCCeEEeecC--CCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 127 LLDIRSGMYVLDACS--APGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 127 ~l~~~~g~~VLDlca--g~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
...+++|++||=.|+ +.|..+.++|+..+.+|++++.++++.+.+++ +|+.
T Consensus 138 ~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~----~Ga~ 190 (329)
T cd08294 138 ICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE----LGFD 190 (329)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCC
Confidence 345788999887763 45556677777777899999999988776644 5664
No 328
>KOG3201|consensus
Probab=91.72 E-value=0.2 Score=42.53 Aligned_cols=103 Identities=17% Similarity=0.178 Sum_probs=61.9
Q ss_pred CCeEEeecCCCch-HHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc----eEEEecCccccchhhhhhhhccccc
Q psy15212 133 GMYVLDACSAPGG-KTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK----ATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 133 g~~VLDlcag~G~-kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~----v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
|.+||++|+|--+ -++++|...+ ..|..-|-++..++.++....++... +.++..+.....
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aq------------- 96 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQ------------- 96 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhH-------------
Confidence 6789999988544 4445554444 68899999999998888776655222 222221111110
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEE
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 273 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvy 273 (329)
.......||.|++ +-|. -+.+....+.+....+|+|-|.-++
T Consensus 97 ---sq~eq~tFDiIla-ADCl---------------------FfdE~h~sLvdtIk~lL~p~g~Al~ 138 (201)
T KOG3201|consen 97 ---SQQEQHTFDIILA-ADCL---------------------FFDEHHESLVDTIKSLLRPSGRALL 138 (201)
T ss_pred ---HHHhhCcccEEEe-ccch---------------------hHHHHHHHHHHHHHHHhCcccceeE
Confidence 0013458999985 2232 3333445677788888999876443
No 329
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=91.64 E-value=1.1 Score=42.37 Aligned_cols=48 Identities=25% Similarity=0.262 Sum_probs=33.8
Q ss_pred hhcCCCCCCeEEeecCCC-chHHHHHHHhCCCE-EEEEeCChhHHHHHHH
Q psy15212 126 PLLDIRSGMYVLDACSAP-GGKTCHLLEIADIK-LISVDNNLSRLNMISE 173 (329)
Q Consensus 126 ~~l~~~~g~~VLDlcag~-G~kt~~la~~~~~~-v~avD~~~~rl~~l~~ 173 (329)
....+++|++||-.++|. |..+.++|+.++.+ |++++.++.+.+.+++
T Consensus 156 ~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~ 205 (343)
T cd05285 156 RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKE 205 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence 345678899988876543 55566667777755 9999988888766644
No 330
>PRK07774 short chain dehydrogenase; Provisional
Probab=91.57 E-value=2.4 Score=37.73 Aligned_cols=61 Identities=15% Similarity=0.118 Sum_probs=43.0
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.+.++|=.| |+|+.+.++++.+- .+|+.++.++...+.+...+...+..+..+..|..+..
T Consensus 5 ~~k~vlItG-asg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~ 68 (250)
T PRK07774 5 DDKVAIVTG-AAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPD 68 (250)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHH
Confidence 355677555 66788888887543 69999999887777776666554444667788887653
No 331
>PRK12937 short chain dehydrogenase; Provisional
Probab=91.41 E-value=2.5 Score=37.36 Aligned_cols=131 Identities=9% Similarity=0.104 Sum_probs=71.7
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC---CEEEEEeC-ChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD---IKLISVDN-NLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~---~~v~avD~-~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
++.+||=.|+ +|+.+.++++.+. .+++.+.. ++...+.+.+.+...+..+.++..|..+.. .+.-..+. ..
T Consensus 4 ~~~~vlItG~-~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~--~~~~~~~~-~~- 78 (245)
T PRK12937 4 SNKVAIVTGA-SRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAA--AVTRLFDA-AE- 78 (245)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHH--HHHHHHHH-HH-
Confidence 3556666665 5788888887543 46666554 345566666667666666888889987743 11000000 00
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH----HHHHHHHHHHHHhcCCCCCEEEEEcCCC
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL----SKYSCKILNNLWKMLKPGGKLLFVTCSL 278 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l----~~~q~~lL~~a~~~LkpgG~lvysTCS~ 278 (329)
. ..+..|.|+..+.-.+.+.+. ..+.++.... ..-...+++.+.+.++.+|.+++.+++.
T Consensus 79 --~--~~~~id~vi~~ag~~~~~~~~-------~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~ 142 (245)
T PRK12937 79 --T--AFGRIDVLVNNAGVMPLGTIA-------DFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLSTSV 142 (245)
T ss_pred --H--HcCCCCEEEECCCCCCCCChh-------hCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEeecc
Confidence 0 114689999866422111111 1122222211 1223345667777777889999987653
No 332
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=91.39 E-value=2.3 Score=41.31 Aligned_cols=141 Identities=18% Similarity=0.209 Sum_probs=78.3
Q ss_pred CCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhc---ccccccccccCCC
Q psy15212 142 APGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDIN---KKTNNRFRFYKNK 215 (329)
Q Consensus 142 g~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 215 (329)
|-|..++.+|.... .+|+|+|+++++++.+.+-- ..+..-+....- +.. +... -+++.. .-.
T Consensus 16 GLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~------~~i~e~~~~~~v-~~~-v~~g~lraTtd~~----~l~ 83 (436)
T COG0677 16 GLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGE------SYIEEPDLDEVV-KEA-VESGKLRATTDPE----ELK 83 (436)
T ss_pred ccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCc------ceeecCcHHHHH-HHH-HhcCCceEecChh----hcc
Confidence 56666666665433 69999999999998764321 122222211100 000 0000 011110 012
Q ss_pred CCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHHHHHhhCC
Q psy15212 216 YFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295 (329)
Q Consensus 216 ~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~~~ 295 (329)
.-|+++.=.|---.+ .+.||..+. ..-.+...+.|++|-.+++- .|..|.-.|+++.++++..+
T Consensus 84 ~~dv~iI~VPTPl~~--~~~pDls~v-------------~~aa~sIa~~L~kG~LVIlE-ST~~PGTTe~v~~plle~~s 147 (436)
T COG0677 84 ECDVFIICVPTPLKK--YREPDLSYV-------------ESAARSIAPVLKKGDLVILE-STTPPGTTEEVVKPLLEERS 147 (436)
T ss_pred cCCEEEEEecCCcCC--CCCCChHHH-------------HHHHHHHHHhcCCCCEEEEe-cCCCCCcHHHHHHHHHhhcC
Confidence 567777666633333 266665432 23455667789988877665 66789999999999999754
Q ss_pred CcE------EecCCCcccCCC
Q psy15212 296 DSI------RLNSPGQLLPTV 310 (329)
Q Consensus 296 ~~~------~~~~~~~~~p~~ 310 (329)
+.+ +--.|-+.+|+.
T Consensus 148 gL~~~~Df~laysPERv~PG~ 168 (436)
T COG0677 148 GLKFGEDFYLAYSPERVLPGN 168 (436)
T ss_pred CCcccceeeEeeCccccCCCc
Confidence 443 322355666653
No 333
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=91.25 E-value=3.4 Score=37.34 Aligned_cols=61 Identities=13% Similarity=0.117 Sum_probs=45.2
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.+.++|=.|++ |+.+.+++..+ +.+|+.++.++..++.+...++..+.++.++.+|..+..
T Consensus 9 ~~k~~lItGa~-~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~ 72 (265)
T PRK07097 9 KGKIALITGAS-YGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDED 72 (265)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHH
Confidence 45577777766 45666666543 368999999999988888888877767788889988754
No 334
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=91.23 E-value=1.4 Score=41.52 Aligned_cols=50 Identities=10% Similarity=0.224 Sum_probs=36.0
Q ss_pred CCCCC--CeEEeecC--CCchHHHHHHHhCCC-EEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 129 DIRSG--MYVLDACS--APGGKTCHLLEIADI-KLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 129 ~~~~g--~~VLDlca--g~G~kt~~la~~~~~-~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
.+++| ++||=.|+ |.|..+.++|+..+. +|++++.++++.+.+++. +|..
T Consensus 149 ~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~---lGa~ 203 (345)
T cd08293 149 HITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSE---LGFD 203 (345)
T ss_pred cCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh---cCCc
Confidence 35555 88888775 456667778887786 899999998887766553 5654
No 335
>PRK06949 short chain dehydrogenase; Provisional
Probab=91.08 E-value=2 Score=38.41 Aligned_cols=60 Identities=15% Similarity=0.243 Sum_probs=46.1
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCcccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKI 192 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~ 192 (329)
.+.+||=.| |+|+.+.++++.+. .+|++++.++++++.+...+...+.++.++..|+.+.
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~ 70 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDY 70 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCH
Confidence 466788776 66778888876643 5899999999998888887766655677888888764
No 336
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=90.95 E-value=0.59 Score=36.76 Aligned_cols=85 Identities=15% Similarity=0.196 Sum_probs=48.8
Q ss_pred CCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC-CCC-ccccHHHHHHHHhh
Q psy15212 216 YFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC-SLW-FEESEEQAIIFSKN 293 (329)
Q Consensus 216 ~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC-S~~-~~Ene~vv~~~l~~ 293 (329)
+||+|+-+||+............. . .-..+..-+++.+.++| +|.+.|.|- ++. ..+.-.....++-.
T Consensus 2 kFD~VIGNPPY~~~~~~~~~~~~~--~------~~~dlY~~Fie~~~~ll--~G~~~~I~P~~~l~~~~~~~~lR~~l~~ 71 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIKSLSKKKKKK--K------KKSDLYILFIEKSLNLL--NGYLSFITPNSFLKSGKYGKKLRKFLLN 71 (106)
T ss_pred CcCEEEECCCChhhccccchhhcc--c------ccCcHHHHHHHHHHHHh--CCeEEEEeChHHhCcCchHHHHHHHHhc
Confidence 599999999997554322111100 0 12334556888999988 999988764 455 45555556666544
Q ss_pred CCCcE-EecCCC--cccCCC
Q psy15212 294 HKDSI-RLNSPG--QLLPTV 310 (329)
Q Consensus 294 ~~~~~-~~~~~~--~~~p~~ 310 (329)
...+. +...+. .++.+.
T Consensus 72 ~~~i~~i~~f~~~~~vF~~a 91 (106)
T PF07669_consen 72 NTNIKKIIDFGERKKVFEDA 91 (106)
T ss_pred CCCeeEEEECCCcccCCCCC
Confidence 43443 333322 256654
No 337
>PRK07890 short chain dehydrogenase; Provisional
Probab=90.93 E-value=3.8 Score=36.57 Aligned_cols=61 Identities=18% Similarity=0.217 Sum_probs=45.7
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.+.+||=.|+ +|+.+.+++..+- .+|+.++.++..++.+...+...+..+..+..|..+..
T Consensus 4 ~~k~vlItGa-~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 67 (258)
T PRK07890 4 KGKVVVVSGV-GPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDED 67 (258)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHH
Confidence 3567776654 6678888776543 69999999998888888777766666788889987643
No 338
>PRK05876 short chain dehydrogenase; Provisional
Probab=90.80 E-value=2.6 Score=38.60 Aligned_cols=60 Identities=10% Similarity=0.058 Sum_probs=45.3
Q ss_pred CCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
|..+|=.|+ +|+.+.++++.+. .+|+.+|.+...++.+.+.++..+.++.++..|..+..
T Consensus 6 ~k~vlVTGa-s~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~ 68 (275)
T PRK05876 6 GRGAVITGG-ASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHRE 68 (275)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHH
Confidence 567887766 4677888776543 68999999998888777777766666778888988754
No 339
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=90.77 E-value=3.8 Score=36.61 Aligned_cols=61 Identities=16% Similarity=0.145 Sum_probs=46.3
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.|.+||=.|+ +|+.+..+++.+ +.+|+.++.++..++.+...+++.+..+.++.+|..+..
T Consensus 10 ~~k~ilItGa-s~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~ 73 (256)
T PRK06124 10 AGQVALVTGS-ARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEE 73 (256)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHH
Confidence 4668887774 666777777654 369999999998888888777777766778888987643
No 340
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=90.74 E-value=0.52 Score=41.98 Aligned_cols=132 Identities=20% Similarity=0.236 Sum_probs=78.3
Q ss_pred hhHHHHhhhcCC----CC----CCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCcc
Q psy15212 119 AAAQLAAPLLDI----RS----GMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDIS 190 (329)
Q Consensus 119 ~~s~l~~~~l~~----~~----g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~ 190 (329)
.+|.+.+.+|.. .. .-++||+||=+.......... -.|+++|+++.- -.+...|+.
T Consensus 30 dSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~~~--fdvt~IDLns~~--------------~~I~qqDFm 93 (219)
T PF11968_consen 30 DSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTSGW--FDVTRIDLNSQH--------------PGILQQDFM 93 (219)
T ss_pred chhHHHHHHhhhhccccccccccceEEeecccCCCCcccccCc--eeeEEeecCCCC--------------CCceeeccc
Confidence 356666666641 11 248999998755433322211 469999996521 346678887
Q ss_pred ccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCE
Q psy15212 191 KINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 270 (329)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~ 270 (329)
+.+++. ...++||+|.+ | =+++=-|+.. .--++|+++.++|+|+|.
T Consensus 94 ~rplp~---------------~~~e~FdvIs~----S--LVLNfVP~p~-------------~RG~Ml~r~~~fL~~~g~ 139 (219)
T PF11968_consen 94 ERPLPK---------------NESEKFDVISL----S--LVLNFVPDPK-------------QRGEMLRRAHKFLKPPGL 139 (219)
T ss_pred cCCCCC---------------CcccceeEEEE----E--EEEeeCCCHH-------------HHHHHHHHHHHHhCCCCc
Confidence 765321 23578999974 2 2333333321 123589999999999999
Q ss_pred -----EEEEc---CCCC-ccccHHHHHHHHhhCCCcEEec
Q psy15212 271 -----LLFVT---CSLW-FEESEEQAIIFSKNHKDSIRLN 301 (329)
Q Consensus 271 -----lvysT---CS~~-~~Ene~vv~~~l~~~~~~~~~~ 301 (329)
|+..+ |--+ .-=+++....+++.- +|..+.
T Consensus 140 ~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~L-Gf~~~~ 178 (219)
T PF11968_consen 140 SLFPSLFLVLPLPCVTNSRYMTEERLREIMESL-GFTRVK 178 (219)
T ss_pred cCcceEEEEeCchHhhcccccCHHHHHHHHHhC-CcEEEE
Confidence 77764 4322 223566667777665 565443
No 341
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=90.59 E-value=1.5 Score=41.55 Aligned_cols=45 Identities=18% Similarity=0.088 Sum_probs=32.3
Q ss_pred CCCCCCeEEeecCCCchH-HHHHHHh-CC-CEEEEEeCChhHHHHHHH
Q psy15212 129 DIRSGMYVLDACSAPGGK-TCHLLEI-AD-IKLISVDNNLSRLNMISE 173 (329)
Q Consensus 129 ~~~~g~~VLDlcag~G~k-t~~la~~-~~-~~v~avD~~~~rl~~l~~ 173 (329)
.+++|++||=.|||+=|. +.++++. ++ .+|+++|.++.+++.++.
T Consensus 160 ~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~ 207 (341)
T cd08237 160 AHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF 207 (341)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh
Confidence 357899999998754332 2455554 44 589999999999888753
No 342
>PRK07063 short chain dehydrogenase; Provisional
Probab=90.59 E-value=3.1 Score=37.31 Aligned_cols=60 Identities=12% Similarity=0.124 Sum_probs=44.5
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHH--cCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKR--LNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~--~g~~v~~~~~D~~~~~ 193 (329)
|.+||-.|++ |+.+.++++.+ +.+|+.++.++..++.+.+.+.. .+..+.++..|..+..
T Consensus 7 ~k~vlVtGas-~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~ 71 (260)
T PRK07063 7 GKVALVTGAA-QGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAA 71 (260)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHH
Confidence 5678877764 67787777654 36999999999988888877766 3444778888987643
No 343
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=90.52 E-value=2.8 Score=37.52 Aligned_cols=60 Identities=15% Similarity=0.141 Sum_probs=45.4
Q ss_pred CCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
|.++|=. .|+|+.+.++++.+- ..|+.++.++...+.+.+.+...+..+.++.+|..+..
T Consensus 7 ~~~vlIt-Gasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~ 69 (262)
T PRK13394 7 GKTAVVT-GAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNED 69 (262)
T ss_pred CCEEEEE-CCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHH
Confidence 5677744 556788888776543 58999999998888888887776666778889988754
No 344
>PRK09242 tropinone reductase; Provisional
Probab=90.50 E-value=3.7 Score=36.80 Aligned_cols=130 Identities=8% Similarity=0.022 Sum_probs=72.3
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHc--CCceEEEecCccccchhhhhhhhccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRL--NLKATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~--g~~v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
.|.++|=.|+ +|+.+..+++.+. .+|+.++.+.+.++.+..++... +.++.++.+|..+... +.-..+. ..
T Consensus 8 ~~k~~lItGa-~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~--~~~~~~~-~~ 83 (257)
T PRK09242 8 DGQTALITGA-SKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDED--RRAILDW-VE 83 (257)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHH--HHHHHHH-HH
Confidence 3667777766 5567777776543 68999999998888888777665 4457788889876430 0000000 00
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHH----HHHHHHHHHHHhcCC--CCCEEEEEcCC
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLS----KYSCKILNNLWKMLK--PGGKLLFVTCS 277 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~----~~q~~lL~~a~~~Lk--pgG~lvysTCS 277 (329)
. .-+.+|.|+..+-... ..|. +..+.++..... .-...+++.+.+.++ ++|.+++.++.
T Consensus 84 ---~--~~g~id~li~~ag~~~-----~~~~--~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~ 148 (257)
T PRK09242 84 ---D--HWDGLHILVNNAGGNI-----RKAA--IDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHASSAIVNIGSV 148 (257)
T ss_pred ---H--HcCCCCEEEECCCCCC-----CCCh--hhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCceEEEECcc
Confidence 0 1246899887553211 1111 122333333221 122345566655553 46788887664
No 345
>PRK06172 short chain dehydrogenase; Provisional
Probab=90.40 E-value=3.6 Score=36.74 Aligned_cols=60 Identities=12% Similarity=0.081 Sum_probs=45.9
Q ss_pred CCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+.+||=.|+ +|+.+..+++.+. .+|+.++.++..++.+.+.++..+.++.++..|+.+..
T Consensus 7 ~k~ilItGa-s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 69 (253)
T PRK06172 7 GKVALVTGG-AAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDA 69 (253)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHH
Confidence 567887775 5667777765443 69999999999888888888777766788889987643
No 346
>PRK06181 short chain dehydrogenase; Provisional
Probab=90.35 E-value=4 Score=36.65 Aligned_cols=58 Identities=21% Similarity=0.208 Sum_probs=42.2
Q ss_pred eEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 135 YVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 135 ~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+||=.| |+|+.+.++++.+ +.+|++++.++...+.+.+.+...+..+.++..|..+..
T Consensus 3 ~vlVtG-asg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~ 63 (263)
T PRK06181 3 VVIITG-ASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAE 63 (263)
T ss_pred EEEEec-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHH
Confidence 566454 6677888877543 369999999988877777777666656778888987753
No 347
>PRK07814 short chain dehydrogenase; Provisional
Probab=90.22 E-value=4 Score=36.87 Aligned_cols=61 Identities=10% Similarity=0.162 Sum_probs=46.6
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
++.++|=.|+ +|+.+.++++.+ +.+|+.++.++..++.+.+.+...+..+.++..|..+..
T Consensus 9 ~~~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~ 72 (263)
T PRK07814 9 DDQVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPE 72 (263)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHH
Confidence 4668888875 677888887654 369999999998888777777666656778888987754
No 348
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=90.20 E-value=2.5 Score=37.63 Aligned_cols=74 Identities=15% Similarity=0.185 Sum_probs=52.3
Q ss_pred CeEEeecCCCch--HHHHHH---HhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhccccc
Q psy15212 134 MYVLDACSAPGG--KTCHLL---EIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 134 ~~VLDlcag~G~--kt~~la---~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
..+++.|++-|. .|+.|| ...+|+++++-.++..+...++.+..+|+. ++++.+|.....+
T Consensus 43 kliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~------------ 110 (218)
T PF07279_consen 43 KLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVM------------ 110 (218)
T ss_pred eEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHH------------
Confidence 468888766443 344443 335589999999999999999999988886 6888888543111
Q ss_pred ccccccCCCCCCEEEEcc
Q psy15212 207 NRFRFYKNKYFDRILADL 224 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~ 224 (329)
. .-...|.+++|.
T Consensus 111 ---~--~~~~iDF~vVDc 123 (218)
T PF07279_consen 111 ---P--GLKGIDFVVVDC 123 (218)
T ss_pred ---h--hccCCCEEEEeC
Confidence 1 125799999985
No 349
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=90.18 E-value=1.8 Score=40.74 Aligned_cols=51 Identities=12% Similarity=0.238 Sum_probs=37.8
Q ss_pred cCCCCCCeEEeecC--CCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 128 LDIRSGMYVLDACS--APGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 128 l~~~~g~~VLDlca--g~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
..+++|++||=.|+ |-|..+.++|+..+.+|++.+.++++.+.+++. +|..
T Consensus 147 ~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~---lGa~ 199 (338)
T cd08295 147 CKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNK---LGFD 199 (338)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCc
Confidence 45789999998775 455566777777778999999888887766543 4654
No 350
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=90.16 E-value=3 Score=38.41 Aligned_cols=118 Identities=18% Similarity=0.228 Sum_probs=62.9
Q ss_pred CeEEeecCCCc--hHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhccccccc
Q psy15212 134 MYVLDACSAPG--GKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 134 ~~VLDlcag~G--~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
...||+|||-= +.+=++|+... ++|+-+|+++--+...+..+....-. ..++.+|++++. .+. ........
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~--~iL--~~p~~~~~ 145 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPE--AIL--AHPEVRGL 145 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HH--HHH--CSHHHHCC
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHH--HHh--cCHHHHhc
Confidence 57999999943 34555666543 89999999999999999998876432 689999999865 110 00000000
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
++ .++..=+++ .|++..-|+ .++ ...++......|.||.+|++|-.+
T Consensus 146 lD--~~rPVavll-------~~vLh~v~D------~~d-------p~~iv~~l~d~lapGS~L~ish~t 192 (267)
T PF04672_consen 146 LD--FDRPVAVLL-------VAVLHFVPD------DDD-------PAGIVARLRDALAPGSYLAISHAT 192 (267)
T ss_dssp ----TTS--EEEE-------CT-GGGS-C------GCT-------HHHHHHHHHCCS-TT-EEEEEEEB
T ss_pred CC--CCCCeeeee-------eeeeccCCC------ccC-------HHHHHHHHHHhCCCCceEEEEecC
Confidence 11 112222333 234433333 122 345788889999999999999655
No 351
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=90.15 E-value=2.2 Score=37.99 Aligned_cols=57 Identities=16% Similarity=0.085 Sum_probs=42.3
Q ss_pred EEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 136 VLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 136 VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+|=.| |+|+.+.++++.+ +.+|+.++.+..+++.+.+.+...+..+.++.+|..+..
T Consensus 3 ~lItG-~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~ 62 (254)
T TIGR02415 3 ALVTG-GAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKD 62 (254)
T ss_pred EEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHH
Confidence 44444 5678888877654 369999999988888777777777766888889987643
No 352
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.95 E-value=2.9 Score=37.86 Aligned_cols=133 Identities=10% Similarity=0.048 Sum_probs=67.8
Q ss_pred CCCeEEeecCCC-chHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHc-CCceEEEecCccccchhhhhhhhccccc
Q psy15212 132 SGMYVLDACSAP-GGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRL-NLKATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 132 ~g~~VLDlcag~-G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~-g~~v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
.|..+|=.|+++ +|.+..+++.+. .+|+.++.+....+.+++..+.. +..+..+..|+.+... +.--.+. ..
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~--v~~~~~~-~~ 82 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEE--ITACFET-IK 82 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHH--HHHHHHH-HH
Confidence 467899999884 888888887543 58888776533233333333333 3346677889877541 0000000 00
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH----HHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL----SKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l----~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
. .-+++|.++.++-....+.+. .+ .+..+.++.... ......+.+.+...++++|++|..+
T Consensus 83 ---~--~~g~ld~lv~nag~~~~~~~~-~~--~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~is 147 (257)
T PRK08594 83 ---E--EVGVIHGVAHCIAFANKEDLR-GE--FLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLT 147 (257)
T ss_pred ---H--hCCCccEEEECcccCCCCcCC-Cc--cccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEc
Confidence 0 125789888766322110000 01 111222222211 1122234566677777889887654
No 353
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=89.92 E-value=1.6 Score=38.93 Aligned_cols=43 Identities=21% Similarity=0.277 Sum_probs=34.7
Q ss_pred CCCCCeEEeecCCC-chHHHHHHHhCCCEEEEEeCChhHHHHHH
Q psy15212 130 IRSGMYVLDACSAP-GGKTCHLLEIADIKLISVDNNLSRLNMIS 172 (329)
Q Consensus 130 ~~~g~~VLDlcag~-G~kt~~la~~~~~~v~avD~~~~rl~~l~ 172 (329)
..+|++||..|+|+ |..+.++++..+.+|++++.++.+.+.++
T Consensus 132 ~~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~ 175 (271)
T cd05188 132 LKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAK 175 (271)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH
Confidence 37899999999886 66667777777789999999988877664
No 354
>PRK07326 short chain dehydrogenase; Provisional
Probab=89.85 E-value=3.6 Score=36.21 Aligned_cols=58 Identities=14% Similarity=0.098 Sum_probs=42.4
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCcccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKI 192 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~ 192 (329)
+..||=.| |+|+.+.++++.+ +.+|++++.++...+.+.+.+... ..++++.+|+.+.
T Consensus 6 ~~~ilItG-atg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~D~~~~ 66 (237)
T PRK07326 6 GKVALITG-GSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK-GNVLGLAADVRDE 66 (237)
T ss_pred CCEEEEEC-CCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc-CcEEEEEccCCCH
Confidence 56788777 4788888887654 368999999988887776666543 3377888888764
No 355
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=89.84 E-value=3.1 Score=37.66 Aligned_cols=47 Identities=19% Similarity=0.172 Sum_probs=33.9
Q ss_pred hcCCCCCCeEEeecCCC-chHHHHHHHhCCCE-EEEEeCChhHHHHHHH
Q psy15212 127 LLDIRSGMYVLDACSAP-GGKTCHLLEIADIK-LISVDNNLSRLNMISE 173 (329)
Q Consensus 127 ~l~~~~g~~VLDlcag~-G~kt~~la~~~~~~-v~avD~~~~rl~~l~~ 173 (329)
...+++|++||=.++|+ |..+.++|+.++.+ |++++.++++.+.+++
T Consensus 92 ~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~ 140 (277)
T cd08255 92 DAEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEA 140 (277)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHH
Confidence 44678899988886544 44556677777766 9999999998765443
No 356
>PRK08324 short chain dehydrogenase; Validated
Probab=89.79 E-value=2.4 Score=44.42 Aligned_cols=132 Identities=13% Similarity=0.158 Sum_probs=71.2
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
+|..||=.|+ +|+.+.++++.+ +.+|+++|.++..++.+...+... ..+.++..|..+... +.-..+. .
T Consensus 421 ~gk~vLVTGa-sggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~-~~v~~v~~Dvtd~~~--v~~~~~~-~--- 492 (681)
T PRK08324 421 AGKVALVTGA-AGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP-DRALGVACDVTDEAA--VQAAFEE-A--- 492 (681)
T ss_pred CCCEEEEecC-CCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc-CcEEEEEecCCCHHH--HHHHHHH-H---
Confidence 5677886665 567777777653 369999999998887766655432 246778888876430 0000000 0
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCC---CCEEEEEcC
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKP---GGKLLFVTC 276 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~Lkp---gG~lvysTC 276 (329)
....+.+|.|+..+-.+..+.+...+...|. ..+.....-...+++.+.+.++. ||.+|+.+.
T Consensus 493 --~~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~---~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS 558 (681)
T PRK08324 493 --ALAFGGVDIVVSNAGIAISGPIEETSDEDWR---RSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIAS 558 (681)
T ss_pred --HHHcCCCCEEEECCCCCCCCChhhCCHHHHH---HHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence 0012468999877644333322211111111 01111122234466667766665 687777654
No 357
>PLN02827 Alcohol dehydrogenase-like
Probab=89.65 E-value=1.5 Score=42.35 Aligned_cols=48 Identities=19% Similarity=0.183 Sum_probs=33.5
Q ss_pred cCCCCCCeEEeecCCCchHHHH---HHHhCCC-EEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 128 LDIRSGMYVLDACSAPGGKTCH---LLEIADI-KLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 128 l~~~~g~~VLDlcag~G~kt~~---la~~~~~-~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
..+++|++||=.|+ |+.+.. +|+..+. .|+++|.++.+.+.+ +.+|+.
T Consensus 189 ~~~~~g~~VlV~G~--G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a----~~lGa~ 240 (378)
T PLN02827 189 ADVSKGSSVVIFGL--GTVGLSVAQGAKLRGASQIIGVDINPEKAEKA----KTFGVT 240 (378)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH----HHcCCc
Confidence 35778999998865 555544 4555564 699999999887765 346764
No 358
>PRK06701 short chain dehydrogenase; Provisional
Probab=89.61 E-value=3.2 Score=38.37 Aligned_cols=130 Identities=11% Similarity=0.065 Sum_probs=70.8
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCCh-hHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNL-SRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~-~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
.|.++|=.|+ +|+.+.+++..+ +.+|+.++.+. ..++.+...++..+.++.++..|+.+... +.-.....
T Consensus 45 ~~k~iLItGa-sggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~--~~~~~~~i--- 118 (290)
T PRK06701 45 KGKVALITGG-DSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAF--CKDAVEET--- 118 (290)
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHH--HHHHHHHH---
Confidence 3667887775 566777777654 36888888875 34555556666666667788899877431 10000000
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHH----HHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIK----KLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~----~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
......+|.|+..+-.+ .... + . ...+.++.. ....-...+++.+.+.++++|.+|+.+.
T Consensus 119 ---~~~~~~iD~lI~~Ag~~---~~~~-~-~-~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS 182 (290)
T PRK06701 119 ---VRELGRLDILVNNAAFQ---YPQQ-S-L-EDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGS 182 (290)
T ss_pred ---HHHcCCCCEEEECCccc---CCCC-C-c-ccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEec
Confidence 00113689998766321 1100 0 0 011122221 2222344566777777778888888654
No 359
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=89.58 E-value=2.2 Score=40.01 Aligned_cols=43 Identities=19% Similarity=0.176 Sum_probs=31.3
Q ss_pred CCCCCeEEeecCCC-chHHHHHHHhCCC-EEEEEeCChhHHHHHH
Q psy15212 130 IRSGMYVLDACSAP-GGKTCHLLEIADI-KLISVDNNLSRLNMIS 172 (329)
Q Consensus 130 ~~~g~~VLDlcag~-G~kt~~la~~~~~-~v~avD~~~~rl~~l~ 172 (329)
..+|++||-.++|. |..+.++|+.++. +|++++.++.+.+.++
T Consensus 163 ~~~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~ 207 (339)
T cd08232 163 DLAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVAR 207 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH
Confidence 34788998876554 5566677777775 8999999888776443
No 360
>KOG2651|consensus
Probab=89.56 E-value=0.95 Score=43.56 Aligned_cols=49 Identities=12% Similarity=0.135 Sum_probs=38.1
Q ss_pred HHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHH
Q psy15212 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLN 169 (329)
Q Consensus 121 s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~ 169 (329)
|.++..+.+-.+=+.|+|+|||.|..+..++-..+-.|+|+|-|....+
T Consensus 142 selvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ 190 (476)
T KOG2651|consen 142 SELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVE 190 (476)
T ss_pred HHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHH
Confidence 4555555555666799999999999999998767789999998854333
No 361
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.54 E-value=4.5 Score=36.54 Aligned_cols=131 Identities=11% Similarity=0.004 Sum_probs=68.7
Q ss_pred CCCeEEeecCCCc-hHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccc
Q psy15212 132 SGMYVLDACSAPG-GKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 132 ~g~~VLDlcag~G-~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
.|..+|-.|+++| |++..+|+.+ +.+|+.++.+....+.+++..+..+ .+.++..|+.+... +.--.+ ....
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~--v~~~~~-~~~~ 84 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELD-APIFLPLDVREPGQ--LEAVFA-RIAE 84 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhc-cceEEecCcCCHHH--HHHHHH-HHHH
Confidence 4678999999984 8888887664 3688888888654444444333332 23467788876531 000000 0000
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHH----HHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLS----KYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~----~~q~~lL~~a~~~LkpgG~lvys 274 (329)
..+..|.++.++-....... ....+..+.++..... .-...+.+.+...++.+|.++..
T Consensus 85 -----~~g~ld~lv~nAg~~~~~~~---~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~i 147 (258)
T PRK07533 85 -----EWGRLDFLLHSIAFAPKEDL---HGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTM 147 (258)
T ss_pred -----HcCCCCEEEEcCccCCcccc---cCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEE
Confidence 11468999987632211000 0001122333332221 22334556677777778887764
No 362
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=89.24 E-value=0.34 Score=42.51 Aligned_cols=78 Identities=14% Similarity=0.118 Sum_probs=40.4
Q ss_pred CCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHHHHHhhCCC
Q psy15212 217 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296 (329)
Q Consensus 217 fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~~~~ 296 (329)
.|+|+.|||+.....- .+.. .+ ..............+.+..+.++|||||.+++. |......+ ..+..+.+...+
T Consensus 1 VdliitDPPY~~~~~~-~~~~-~~-~~~~~~~~y~~~~~~~~~~~~rvLk~~g~~~i~-~~~~~~~~-~~~~~~~~~~g~ 75 (231)
T PF01555_consen 1 VDLIITDPPYNIGKDY-NNYF-DY-GDNKNHEEYLEWMEEWLKECYRVLKPGGSIFIF-IDDREIAG-FLFELALEIFGG 75 (231)
T ss_dssp EEEEEE---TSSSCS-------CS-CHCCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-E-CCEECT-HHHHHHHHHHTT
T ss_pred CCEEEECCCCCCCCCc-chhh-hc-cCCCCHHHHHHHHHHHHHHHHhhcCCCeeEEEE-ecchhhhH-HHHHHHHHHhhh
Confidence 4899999998632210 0000 00 011235666777888999999999999987764 44333222 244445554323
Q ss_pred cEE
Q psy15212 297 SIR 299 (329)
Q Consensus 297 ~~~ 299 (329)
+..
T Consensus 76 ~~~ 78 (231)
T PF01555_consen 76 FFL 78 (231)
T ss_dssp -EE
T ss_pred hhe
Confidence 443
No 363
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=89.20 E-value=2.3 Score=39.84 Aligned_cols=46 Identities=26% Similarity=0.260 Sum_probs=32.6
Q ss_pred hcCCCCCCeEEeecCCC-chHHHHHHHhCCCE-EEEEeCChhHHHHHH
Q psy15212 127 LLDIRSGMYVLDACSAP-GGKTCHLLEIADIK-LISVDNNLSRLNMIS 172 (329)
Q Consensus 127 ~l~~~~g~~VLDlcag~-G~kt~~la~~~~~~-v~avD~~~~rl~~l~ 172 (329)
...+.+|++||-.++|. |..+.++|+..+.. |++++.++.+.+.++
T Consensus 154 ~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~ 201 (343)
T cd08236 154 LAGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVAR 201 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH
Confidence 44577899999986544 55666677777754 999988887766553
No 364
>PRK06194 hypothetical protein; Provisional
Probab=89.01 E-value=5 Score=36.59 Aligned_cols=60 Identities=18% Similarity=0.203 Sum_probs=44.2
Q ss_pred CCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+.+||=.| |+|+.+.++++.+. .+|+.+|.+...++...+.+...+.++.++.+|+.+..
T Consensus 6 ~k~vlVtG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~ 68 (287)
T PRK06194 6 GKVAVITG-AASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAA 68 (287)
T ss_pred CCEEEEeC-CccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHH
Confidence 45777555 55778888876543 68999999988887777766665666778899988743
No 365
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=88.97 E-value=4 Score=37.28 Aligned_cols=122 Identities=17% Similarity=0.167 Sum_probs=78.8
Q ss_pred hhhcCCCCCCeEEeecCCCchHHHHHHHhCC-----CEEEEEeCChhHHHHHHHHHHHc--CCceEEEecCccccchhhh
Q psy15212 125 APLLDIRSGMYVLDACSAPGGKTCHLLEIAD-----IKLISVDNNLSRLNMISENLKRL--NLKATLILSDISKINLKKL 197 (329)
Q Consensus 125 ~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-----~~v~avD~~~~rl~~l~~n~~~~--g~~v~~~~~D~~~~~~~~~ 197 (329)
+++.....+...+|+|+|+-.||..+...+. .+-+.+|++..-++...+-+.+- ++.+.-+.+|....-
T Consensus 71 ~Eia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~L---- 146 (321)
T COG4301 71 AEIASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELAL---- 146 (321)
T ss_pred HHHHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHH----
Confidence 3344455688999999999999999887654 58899999999888655554443 455666777765421
Q ss_pred hhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 198 YIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
... ++.-.++++ -+-|+.|.+ ++++. ..+|......+.||-.+...+--
T Consensus 147 ------------a~~-~~~~~Rl~~-flGStlGN~----------tp~e~-------~~Fl~~l~~a~~pGd~~LlGvDl 195 (321)
T COG4301 147 ------------AEL-PRGGRRLFV-FLGSTLGNL----------TPGEC-------AVFLTQLRGALRPGDYFLLGVDL 195 (321)
T ss_pred ------------hcc-cCCCeEEEE-EecccccCC----------ChHHH-------HHHHHHHHhcCCCcceEEEeccc
Confidence 011 122334443 233555543 33333 23677777889999999988755
Q ss_pred CCcc
Q psy15212 278 LWFE 281 (329)
Q Consensus 278 ~~~~ 281 (329)
..+.
T Consensus 196 ~k~A 199 (321)
T COG4301 196 RKPA 199 (321)
T ss_pred cCHH
Confidence 5544
No 366
>PRK07806 short chain dehydrogenase; Provisional
Probab=88.95 E-value=8.1 Score=34.22 Aligned_cols=125 Identities=12% Similarity=0.131 Sum_probs=67.3
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCCh-hHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNL-SRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~-~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
|.++|-.|+ +|+.+.++++.+ +.+|++++.+. ...+.+...++..+..+.++.+|.++... +.-..+ ....
T Consensus 6 ~k~vlItGa-sggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~--~~~~~~-~~~~- 80 (248)
T PRK07806 6 GKTALVTGS-SRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEES--VAALMD-TARE- 80 (248)
T ss_pred CcEEEEECC-CCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHH--HHHHHH-HHHH-
Confidence 567887764 567888887653 25888887764 45555555565555557788899887541 000000 0000
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
..+..|.|+..+.-+... ...++..+. ....-...+++.+.+.++.+|++|+.+
T Consensus 81 ----~~~~~d~vi~~ag~~~~~--~~~~~~~~~-------vn~~~~~~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 81 ----EFGGLDALVLNASGGMES--GMDEDYAMR-------LNRDAQRNLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred ----hCCCCcEEEECCCCCCCC--CCCcceeeE-------eeeHHHHHHHHHHHhhccCCceEEEEe
Confidence 113689988776422110 111111111 111123456777777777677777664
No 367
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=88.94 E-value=0.29 Score=39.85 Aligned_cols=61 Identities=20% Similarity=0.268 Sum_probs=40.6
Q ss_pred CCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHHHHHhhC
Q psy15212 215 KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH 294 (329)
Q Consensus 215 ~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~~ 294 (329)
..||.|++|+- | -.++|++ |. .++++...+++++||++.--||+ ..|..-|...
T Consensus 49 ~~~Da~ylDgF-s----P~~nPel-Ws-------------~e~~~~l~~~~~~~~~l~Tys~a-------~~Vr~~L~~a 102 (124)
T PF05430_consen 49 ARFDAWYLDGF-S----PAKNPEL-WS-------------EELFKKLARLSKPGGTLATYSSA-------GAVRRALQQA 102 (124)
T ss_dssp T-EEEEEE-SS------TTTSGGG-SS-------------HHHHHHHHHHEEEEEEEEES--B-------HHHHHHHHHC
T ss_pred ccCCEEEecCC-C----CcCCccc-CC-------------HHHHHHHHHHhCCCcEEEEeech-------HHHHHHHHHc
Confidence 68999999973 2 1456773 32 46889999999999988755443 5578888776
Q ss_pred CCcEEecC
Q psy15212 295 KDSIRLNS 302 (329)
Q Consensus 295 ~~~~~~~~ 302 (329)
+|.+...
T Consensus 103 -GF~v~~~ 109 (124)
T PF05430_consen 103 -GFEVEKV 109 (124)
T ss_dssp -TEEEEEE
T ss_pred -CCEEEEc
Confidence 7766544
No 368
>PRK07677 short chain dehydrogenase; Provisional
Probab=88.94 E-value=4.6 Score=36.08 Aligned_cols=59 Identities=7% Similarity=0.067 Sum_probs=42.4
Q ss_pred CeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 134 MYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 134 ~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.++|-.|+ +|+.+.++++.+ +..|+.++.+..+++.+.+.+...+-.+.++..|..+..
T Consensus 2 k~~lItG~-s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 63 (252)
T PRK07677 2 KVVIITGG-SSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPE 63 (252)
T ss_pred CEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHH
Confidence 46676665 555777776553 369999999998888887777665545778888987643
No 369
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=88.86 E-value=2.1 Score=39.87 Aligned_cols=42 Identities=14% Similarity=-0.046 Sum_probs=28.1
Q ss_pred CCCCeEEeecCCC-chHHHHHHHhCCC-EEEEEeCChhHHHHHH
Q psy15212 131 RSGMYVLDACSAP-GGKTCHLLEIADI-KLISVDNNLSRLNMIS 172 (329)
Q Consensus 131 ~~g~~VLDlcag~-G~kt~~la~~~~~-~v~avD~~~~rl~~l~ 172 (329)
.+|++||=+|+|+ |..++++|+.++. .|+++|.++.+++.+.
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~ 186 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGAT 186 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhh
Confidence 4577888776542 3345556666674 5778899988877554
No 370
>PRK07454 short chain dehydrogenase; Provisional
Probab=88.80 E-value=4.6 Score=35.74 Aligned_cols=60 Identities=17% Similarity=0.070 Sum_probs=45.2
Q ss_pred CCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+.++|=.|+ +|+.+..+++.+. .+|++++.++...+.+.+.++..+..+.++.+|.++..
T Consensus 6 ~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 68 (241)
T PRK07454 6 MPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPE 68 (241)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHH
Confidence 456777774 7888888876543 59999999998887777777665555778889988754
No 371
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=88.79 E-value=5 Score=35.52 Aligned_cols=60 Identities=13% Similarity=0.087 Sum_probs=45.1
Q ss_pred CCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+.++|=.|+ +|+.+.+++..+- .+|+.++.+....+.+...+...+..+.++.+|..+..
T Consensus 3 ~~~ilItGa-s~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 65 (250)
T TIGR03206 3 DKTAIVTGG-GGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRD 65 (250)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHH
Confidence 567777765 5778888776543 58999999998888888777766656788889987643
No 372
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=88.78 E-value=3.5 Score=40.06 Aligned_cols=50 Identities=20% Similarity=0.189 Sum_probs=32.0
Q ss_pred cCCCCCCeEEeecCCC-chHHHHHHHhCCC-EEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 128 LDIRSGMYVLDACSAP-GGKTCHLLEIADI-KLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 128 l~~~~g~~VLDlcag~-G~kt~~la~~~~~-~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
..+++|++||=.|+|+ |..+.++|+..+. .|++.|.++.+++.+++ +|..
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~----~Ga~ 232 (393)
T TIGR02819 181 AGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARS----FGCE 232 (393)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH----cCCe
Confidence 4567899887765532 2233455666664 56778998888877654 5654
No 373
>PRK06940 short chain dehydrogenase; Provisional
Probab=88.78 E-value=6.8 Score=35.78 Aligned_cols=57 Identities=18% Similarity=0.194 Sum_probs=42.6
Q ss_pred eEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 135 YVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 135 ~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.+|=.|+ |+.+.++++.+. .+|+.+|.++..++.+.+.++..+.++.++..|..+..
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~ 62 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRE 62 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHH
Confidence 4555554 689999887654 68999999988887777777666666778888987753
No 374
>PRK09072 short chain dehydrogenase; Provisional
Probab=88.66 E-value=5.3 Score=35.93 Aligned_cols=59 Identities=20% Similarity=0.271 Sum_probs=41.1
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+.+||=.|++ |+.+..++..+ |.+|++++.++..++.+...+ ..+..+.++..|..+..
T Consensus 5 ~~~vlItG~s-~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~D~~d~~ 66 (263)
T PRK09072 5 DKRVLLTGAS-GGIGQALAEALAAAGARLLLVGRNAEKLEALAARL-PYPGRHRWVVADLTSEA 66 (263)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-hcCCceEEEEccCCCHH
Confidence 5567766554 66777766543 369999999998887776665 33445778888987754
No 375
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=88.56 E-value=3.5 Score=39.42 Aligned_cols=49 Identities=12% Similarity=0.127 Sum_probs=30.3
Q ss_pred CCCCCeEEeecCCC-chHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 130 IRSGMYVLDACSAP-GGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 130 ~~~g~~VLDlcag~-G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
.++|++||=.|+|+ |..++++|+..+.+|++++.+..+... .++++|..
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~---~~~~~Ga~ 230 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDE---AINRLGAD 230 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhh---HHHhCCCc
Confidence 46789988876532 334455566666788888887665432 23346754
No 376
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=88.51 E-value=7.1 Score=34.46 Aligned_cols=60 Identities=17% Similarity=0.035 Sum_probs=44.0
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+.+||=.|+ +|+.+.+++..+ +.+|++++.++..+..+...+...+..+.++.+|..+..
T Consensus 6 ~~~ilItGa-sg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~ 68 (251)
T PRK12826 6 GRVALVTGA-ARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRA 68 (251)
T ss_pred CCEEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHH
Confidence 567886664 677777776543 358999999988887777777666655788888987643
No 377
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=88.46 E-value=3.9 Score=39.88 Aligned_cols=46 Identities=17% Similarity=0.014 Sum_probs=34.3
Q ss_pred CCCCCCeEEeecC--CCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHH
Q psy15212 129 DIRSGMYVLDACS--APGGKTCHLLEIAD---IKLISVDNNLSRLNMISEN 174 (329)
Q Consensus 129 ~~~~g~~VLDlca--g~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n 174 (329)
.+++|++||=.|+ +-|..++++|+.++ .+|+++|.++.+++.+++.
T Consensus 172 ~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 172 GIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred CCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence 4678999887753 34555666777654 3899999999999988775
No 378
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=88.42 E-value=2.6 Score=40.26 Aligned_cols=45 Identities=27% Similarity=0.248 Sum_probs=32.0
Q ss_pred cCCCCCCeEEeecCCC-chHHHHHHHhCCC-EEEEEeCChhHHHHHH
Q psy15212 128 LDIRSGMYVLDACSAP-GGKTCHLLEIADI-KLISVDNNLSRLNMIS 172 (329)
Q Consensus 128 l~~~~g~~VLDlcag~-G~kt~~la~~~~~-~v~avD~~~~rl~~l~ 172 (329)
..+++|+.||=.|+|. |..+.++|+..+. .++++|.++.+.+.++
T Consensus 182 ~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~ 228 (365)
T cd08278 182 LKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAK 228 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 3467888988886533 4455566666774 7999999998877554
No 379
>PRK07062 short chain dehydrogenase; Provisional
Probab=88.31 E-value=6.3 Score=35.43 Aligned_cols=61 Identities=11% Similarity=0.107 Sum_probs=43.3
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHc--CCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRL--NLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~--g~~v~~~~~D~~~~~ 193 (329)
.|..+|=.|++ |+.+.++++.+ +.+|+.++.++.+++.+.+.+... +.++..+..|..+..
T Consensus 7 ~~k~~lItGas-~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 72 (265)
T PRK07062 7 EGRVAVVTGGS-SGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEA 72 (265)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHH
Confidence 36678877754 56777777654 369999999998888777766554 234677888887754
No 380
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=88.20 E-value=6.9 Score=34.98 Aligned_cols=60 Identities=15% Similarity=0.138 Sum_probs=45.1
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+.+||=.|+ +|+.+.++++.+ +.+|+.++.+...++.+...++..+.++.++..|+++..
T Consensus 11 ~k~vlVtG~-s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~ 73 (255)
T PRK06113 11 GKCAIITGA-GAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQ 73 (255)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHH
Confidence 678888885 566777776643 368999999988888887777776666778889988754
No 381
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.16 E-value=8.6 Score=33.98 Aligned_cols=60 Identities=13% Similarity=0.095 Sum_probs=45.4
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCcccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKI 192 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~ 192 (329)
+|.++|=.|+ .|+.+..+++.+ +.+|+.+|.++.+++.+.+.+...+..+.++..|..+.
T Consensus 4 ~~~~~lItG~-~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 66 (253)
T PRK08217 4 KDKVIVITGG-AQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDE 66 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCH
Confidence 3668887765 577788777654 36899999999888888777776666677888898764
No 382
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=88.10 E-value=8.4 Score=34.12 Aligned_cols=58 Identities=10% Similarity=0.055 Sum_probs=43.1
Q ss_pred eEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 135 YVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 135 ~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+||=.| |+|+.+.++++.+ +.+|++++.++...+.+...+...+..+.++.+|..+..
T Consensus 3 ~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 63 (255)
T TIGR01963 3 TALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKED 63 (255)
T ss_pred EEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHH
Confidence 455555 5678888887654 368999999998888888777666656788888987643
No 383
>PRK05855 short chain dehydrogenase; Validated
Probab=87.91 E-value=4.6 Score=40.68 Aligned_cols=60 Identities=13% Similarity=0.087 Sum_probs=46.6
Q ss_pred CCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+.++|=.|+ +|+.+.++++.+. .+|+.++.+...++.+.+.++..|..+.++.+|.++..
T Consensus 315 ~~~~lv~G~-s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~ 377 (582)
T PRK05855 315 GKLVVVTGA-GSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDAD 377 (582)
T ss_pred CCEEEEECC-cCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHH
Confidence 456776654 7778888876653 58999999999888888888777777888889998754
No 384
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=87.90 E-value=1.4 Score=42.91 Aligned_cols=57 Identities=21% Similarity=0.218 Sum_probs=41.6
Q ss_pred hhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHH
Q psy15212 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLK 176 (329)
Q Consensus 119 ~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~ 176 (329)
+...+-..+|++.|+++||=+++| |--.+.++...+.+|+|||+|+.....++=.+.
T Consensus 22 EDp~vD~~aL~i~~~d~vl~ItSa-G~N~L~yL~~~P~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 22 EDPRVDMEALNIGPDDRVLTITSA-GCNALDYLLAGPKRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred CCcHHHHHHhCCCCCCeEEEEccC-CchHHHHHhcCCceEEEEeCCHHHHHHHHHHHH
Confidence 334444668889999999999655 555555554455899999999988877665544
No 385
>PRK06500 short chain dehydrogenase; Provisional
Probab=87.85 E-value=7.1 Score=34.51 Aligned_cols=125 Identities=10% Similarity=0.051 Sum_probs=64.7
Q ss_pred CCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
|.+||=.|+ +|+.+.++++.+. .+|++++.+...++.+.+ +.+..+.++..|..+.....-.+.. .
T Consensus 6 ~k~vlItGa-sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~-------~ 74 (249)
T PRK06500 6 GKTALITGG-TSGIGLETARQFLAEGARVAITGRDPASLEAARA---ELGESALVIRADAGDVAAQKALAQA-------L 74 (249)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHH---HhCCceEEEEecCCCHHHHHHHHHH-------H
Confidence 456665554 5778888776543 689999988766654443 3355567778887764310000000 0
Q ss_pred cccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH----HHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 210 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL----SKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 210 ~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l----~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
. -..+.+|.|+..+..+..+.+ +.++.++.... ..--..+++.+.+.++.+|.+++.+.
T Consensus 75 ~-~~~~~id~vi~~ag~~~~~~~-------~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~S 137 (249)
T PRK06500 75 A-EAFGRLDAVFINAGVAKFAPL-------EDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNGS 137 (249)
T ss_pred H-HHhCCCCEEEECCCCCCCCCh-------hhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 0 011468999887643321111 11222222211 12233456666666655666666543
No 386
>PRK07831 short chain dehydrogenase; Provisional
Probab=87.81 E-value=6.4 Score=35.35 Aligned_cols=62 Identities=21% Similarity=0.281 Sum_probs=43.4
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHH-cCC-ceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKR-LNL-KATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~-~g~-~v~~~~~D~~~~~ 193 (329)
.+.++|=.|++..+.+..+++.+ +..|+.+|.+...++...+.++. ++. .+.++..|..+..
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~ 82 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEA 82 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHH
Confidence 46778888765335666666543 36899999999888887777765 443 4778888987643
No 387
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=87.68 E-value=3.6 Score=39.24 Aligned_cols=49 Identities=10% Similarity=0.030 Sum_probs=30.4
Q ss_pred CCCCCeEEeecCC-CchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 130 IRSGMYVLDACSA-PGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 130 ~~~g~~VLDlcag-~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
.++|++||=.|+| -|..+.++|+.++.++++++.++++...+ ++++|..
T Consensus 178 ~~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~---~~~~Ga~ 227 (357)
T PLN02514 178 KQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEA---LEHLGAD 227 (357)
T ss_pred CCCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH---HHhcCCc
Confidence 3678888877442 23334556666667888888877664433 3446764
No 388
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=87.68 E-value=7.4 Score=35.66 Aligned_cols=133 Identities=12% Similarity=0.016 Sum_probs=68.5
Q ss_pred CCCeEEeecCCC-chHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccc
Q psy15212 132 SGMYVLDACSAP-GGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 132 ~g~~VLDlcag~-G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
.|..+|=.|+++ +|.+..+|+.+ +.+|+.++.+....+.+++..+..+.. ..+..|+.+... +.--.+. ..
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~-~~~~~Dv~d~~~--v~~~~~~-i~- 78 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGSD-YVYELDVSKPEH--FKSLAES-LK- 78 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCc-eEEEecCCCHHH--HHHHHHH-HH-
Confidence 367888888874 67888877654 368888888754333444444444433 467788887541 1000000 00
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH----HHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL----SKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l----~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
...+.+|.++.++-....... ..| .+..+.++.... ..-...+.+.++..++.+|++|+.+.
T Consensus 79 ----~~~g~iDilVnnAG~~~~~~~-~~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS 144 (274)
T PRK08415 79 ----KDLGKIDFIVHSVAFAPKEAL-EGS--FLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLSY 144 (274)
T ss_pred ----HHcCCCCEEEECCccCccccc-ccc--cccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEec
Confidence 012578999887632210000 000 111223332222 11223455666777777888877643
No 389
>PRK08643 acetoin reductase; Validated
Probab=87.59 E-value=8.6 Score=34.28 Aligned_cols=60 Identities=20% Similarity=0.137 Sum_probs=44.4
Q ss_pred CCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
|..+|=.| |+|+.+.++++.+- .+|+.++.+...++.+...+...+..+.++.+|..+..
T Consensus 2 ~k~~lItG-as~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~ 64 (256)
T PRK08643 2 SKVALVTG-AGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRD 64 (256)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHH
Confidence 34555444 66778888876543 69999999998888888888776666778889988754
No 390
>PRK08339 short chain dehydrogenase; Provisional
Probab=87.59 E-value=7.1 Score=35.36 Aligned_cols=61 Identities=21% Similarity=0.327 Sum_probs=44.0
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHc-CCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRL-NLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~-g~~v~~~~~D~~~~~ 193 (329)
.|..+|=.|++ |+.+..+++.+ +.+|+.++.+...++.+.+.+... +.++.++..|+.+..
T Consensus 7 ~~k~~lItGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~ 71 (263)
T PRK08339 7 SGKLAFTTASS-KGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKRE 71 (263)
T ss_pred CCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHH
Confidence 35677766655 56777777654 369999999999888887776553 445778888988754
No 391
>KOG0023|consensus
Probab=87.54 E-value=2.9 Score=39.54 Aligned_cols=50 Identities=12% Similarity=0.183 Sum_probs=37.5
Q ss_pred CCCCCeEEeecC-CCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCce
Q psy15212 130 IRSGMYVLDACS-APGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKA 182 (329)
Q Consensus 130 ~~~g~~VLDlca-g~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v 182 (329)
..||..|-=.|+ |-|..+.++|+.|+.+|+++|.+...- ++.++++|.+.
T Consensus 179 ~~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kk---eea~~~LGAd~ 229 (360)
T KOG0023|consen 179 LGPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKK---EEAIKSLGADV 229 (360)
T ss_pred CCCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhH---HHHHHhcCcce
Confidence 568887655554 479999999999999999999987443 34466678763
No 392
>PRK08267 short chain dehydrogenase; Provisional
Probab=87.42 E-value=3.8 Score=36.77 Aligned_cols=56 Identities=13% Similarity=0.003 Sum_probs=39.1
Q ss_pred eEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 135 YVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 135 ~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
++|-.|+ +|+.+..+++.+. .+|++++.++..++.+...+. +..+.++.+|+.+..
T Consensus 3 ~vlItGa-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~D~~~~~ 61 (260)
T PRK08267 3 SIFITGA-ASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG--AGNAWTGALDVTDRA 61 (260)
T ss_pred EEEEeCC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc--CCceEEEEecCCCHH
Confidence 4565554 4777777776543 699999999888777666543 344778889987743
No 393
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=87.42 E-value=4.3 Score=38.81 Aligned_cols=48 Identities=15% Similarity=0.203 Sum_probs=34.1
Q ss_pred cCCCCCCeEEeecCCCchHH---HHHHHhCCC-EEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 128 LDIRSGMYVLDACSAPGGKT---CHLLEIADI-KLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 128 l~~~~g~~VLDlcag~G~kt---~~la~~~~~-~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
..+++|++||=.|+ |+.+ .++|+.++. .|+++|.++.+++.++ .+|..
T Consensus 182 ~~~~~g~~VlV~G~--G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~----~lGa~ 233 (368)
T cd08300 182 AKVEPGSTVAVFGL--GAVGLAVIQGAKAAGASRIIGIDINPDKFELAK----KFGAT 233 (368)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH----HcCCC
Confidence 35688999988864 4444 445566665 7999999999987664 35654
No 394
>PRK06198 short chain dehydrogenase; Provisional
Probab=87.41 E-value=4.5 Score=36.19 Aligned_cols=61 Identities=18% Similarity=0.241 Sum_probs=42.7
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC---CE-EEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD---IK-LISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~---~~-v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.+.+||=.| |+|+.+.++++.+. .+ |+.++.++.........+...+..+.++..|..+..
T Consensus 5 ~~k~vlItG-a~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~ 69 (260)
T PRK06198 5 DGKVALVTG-GTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVE 69 (260)
T ss_pred CCcEEEEeC-CCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHH
Confidence 356777666 46778888876543 45 999999887777666666555555777888887643
No 395
>PRK06914 short chain dehydrogenase; Provisional
Probab=87.40 E-value=6.1 Score=35.83 Aligned_cols=60 Identities=15% Similarity=0.074 Sum_probs=42.2
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCC--ceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNL--KATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~--~v~~~~~D~~~~~ 193 (329)
+..+|-.| |+|+.+.++++.+ +..|++++.++..++.+.+.+...+. .+.++.+|..+..
T Consensus 3 ~k~~lItG-asg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~ 67 (280)
T PRK06914 3 KKIAIVTG-ASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQN 67 (280)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHH
Confidence 44566555 5666777776543 35999999998888877776665554 3788889988754
No 396
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.37 E-value=6.3 Score=34.64 Aligned_cols=59 Identities=15% Similarity=0.196 Sum_probs=42.8
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+.+||-.|++ |+.+.++++.+ +.+|++++.++..++.+...+...+ .++++.+|..+..
T Consensus 5 ~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~ 66 (238)
T PRK05786 5 GKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYG-NIHYVVGDVSSTE 66 (238)
T ss_pred CcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEECCCCCHH
Confidence 5688888874 77888887654 3699999999988877655554433 3677888887643
No 397
>PRK06128 oxidoreductase; Provisional
Probab=87.26 E-value=11 Score=34.91 Aligned_cols=128 Identities=9% Similarity=-0.050 Sum_probs=70.5
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC---CEEEEEeCCh--hHHHHHHHHHHHcCCceEEEecCccccch-hhhhhhhcccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNL--SRLNMISENLKRLNLKATLILSDISKINL-KKLYIDINKKT 205 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~--~rl~~l~~n~~~~g~~v~~~~~D~~~~~~-~~~~~~~~~~~ 205 (329)
.|.+||=.|+ +|+.+.++++.+. .+|+....+. ...+.+.+.++..+.++.++.+|..+... ..+.-...
T Consensus 54 ~~k~vlITGa-s~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~--- 129 (300)
T PRK06128 54 QGRKALITGA-DSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAV--- 129 (300)
T ss_pred CCCEEEEecC-CCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHH---
Confidence 3667887774 6778888776543 5777666543 34555556666666667788899887531 00000000
Q ss_pred cccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH----HHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 206 NNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL----SKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 206 ~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l----~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
. .-+..|.++.++-.... ..+ ....+.++.... ..-...+++.+.+.++++|.+|+.+
T Consensus 130 ----~--~~g~iD~lV~nAg~~~~----~~~--~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~s 191 (300)
T PRK06128 130 ----K--ELGGLDILVNIAGKQTA----VKD--IADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTG 191 (300)
T ss_pred ----H--HhCCCCEEEECCcccCC----CCC--hhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEEC
Confidence 0 11468999987742210 000 011122222222 2233457777888888889888754
No 398
>PRK09291 short chain dehydrogenase; Provisional
Probab=87.21 E-value=7.4 Score=34.65 Aligned_cols=77 Identities=10% Similarity=-0.003 Sum_probs=52.7
Q ss_pred CeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccccc
Q psy15212 134 MYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 134 ~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
.+||=.|+ +|+.+.++++.+ +.+|++.+.++...+.+.......+..+.++.+|..+.. .+. .
T Consensus 3 ~~vlVtGa-sg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~--~~~-----------~ 68 (257)
T PRK09291 3 KTILITGA-GSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAI--DRA-----------Q 68 (257)
T ss_pred CEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHH--HHH-----------H
Confidence 45676655 677888777654 369999999888887777777766666788888987753 000 0
Q ss_pred ccCCCCCCEEEEccC
Q psy15212 211 FYKNKYFDRILADLP 225 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~P 225 (329)
......|.|+.++-
T Consensus 69 -~~~~~id~vi~~ag 82 (257)
T PRK09291 69 -AAEWDVDVLLNNAG 82 (257)
T ss_pred -HhcCCCCEEEECCC
Confidence 11247899998764
No 399
>PRK08251 short chain dehydrogenase; Provisional
Probab=87.03 E-value=9.3 Score=33.82 Aligned_cols=60 Identities=15% Similarity=0.132 Sum_probs=44.3
Q ss_pred CCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHc--CCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRL--NLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~--g~~v~~~~~D~~~~~ 193 (329)
+.++|=.| |+|+.+.++++.+. .+|+.++.++.+++.+...+... +..+.++..|..+..
T Consensus 2 ~k~vlItG-as~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 66 (248)
T PRK08251 2 RQKILITG-ASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHD 66 (248)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHH
Confidence 34677666 57788888887643 59999999999988877776544 445788889988753
No 400
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=86.99 E-value=3.5 Score=39.74 Aligned_cols=47 Identities=11% Similarity=0.122 Sum_probs=29.6
Q ss_pred CCCCeEEeecCCC-chHHHHHHHhCCCEEEEEeCChhH-HHHHHHHHHHcCCc
Q psy15212 131 RSGMYVLDACSAP-GGKTCHLLEIADIKLISVDNNLSR-LNMISENLKRLNLK 181 (329)
Q Consensus 131 ~~g~~VLDlcag~-G~kt~~la~~~~~~v~avD~~~~r-l~~l~~n~~~~g~~ 181 (329)
++|++||=.|+|+ |..+.++|+.++.+|++++.+..+ .+. ++.+|..
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~----a~~lGa~ 225 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREA----IDRLGAD 225 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHH----HHhCCCc
Confidence 5789988776532 334455566667789999887543 333 3456764
No 401
>PRK09186 flagellin modification protein A; Provisional
Probab=86.86 E-value=5.1 Score=35.69 Aligned_cols=60 Identities=23% Similarity=0.192 Sum_probs=41.9
Q ss_pred CCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHc-CCc-eEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRL-NLK-ATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~-g~~-v~~~~~D~~~~~ 193 (329)
|.+||=.|+ +|+.+.+++..+. .+|+.++.++..++.+.+.+... +-. +.++.+|+.+..
T Consensus 4 ~k~vlItGa-s~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~ 68 (256)
T PRK09186 4 GKTILITGA-GGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQE 68 (256)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHH
Confidence 556776665 5778888887643 58999999988887777666432 323 566688988753
No 402
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=86.84 E-value=8.1 Score=33.99 Aligned_cols=60 Identities=22% Similarity=0.231 Sum_probs=43.7
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEE-eCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISV-DNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~av-D~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+.++|=.| |+|+.+.+++..+ +.+|+.+ +.++...+.+.+.+...+..+.++..|..+..
T Consensus 5 ~~~ilI~G-asg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 68 (247)
T PRK05565 5 GKVAIVTG-ASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEE 68 (247)
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHH
Confidence 34666666 4678888877643 3588888 99888888777777765555788899988754
No 403
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=86.77 E-value=9.8 Score=33.68 Aligned_cols=60 Identities=13% Similarity=0.123 Sum_probs=41.3
Q ss_pred CCeEEeecCCCchHHHHHHHhCC---CEEEE-EeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD---IKLIS-VDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~---~~v~a-vD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
|.++|=.|+ +|+.+.++++.+- .+|+. .+.+....+.+.+.++..+..+.++.+|..+..
T Consensus 4 ~~~vlItGa-~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 67 (250)
T PRK08063 4 GKVALVTGS-SRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVE 67 (250)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHH
Confidence 557776665 5788888876543 46665 466777777776677666666778889987653
No 404
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=86.77 E-value=8 Score=34.19 Aligned_cols=59 Identities=12% Similarity=0.146 Sum_probs=42.1
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+.+||=.|+ +|+.+.++++.+ +.+|++++.++..++.+...+.. +..+.++.+|..+..
T Consensus 5 ~~~vlItGa-sg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~ 66 (251)
T PRK07231 5 GKVAIVTGA-SSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA-GGRAIAVAADVSDEA 66 (251)
T ss_pred CcEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-CCeEEEEECCCCCHH
Confidence 456666654 567777776543 35899999999888777766654 455788889988754
No 405
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=86.71 E-value=9.4 Score=33.44 Aligned_cols=60 Identities=17% Similarity=0.164 Sum_probs=45.8
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+.+||=.|+ +|+.+.++++.+ +.+|++++.++...+.+...++..+.++.++.+|..+..
T Consensus 5 ~~~ilItGa-sg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 67 (246)
T PRK05653 5 GKTALVTGA-SRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEA 67 (246)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHH
Confidence 457886665 788888887654 358999999998888777777766766788889987643
No 406
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=86.61 E-value=4.8 Score=37.98 Aligned_cols=50 Identities=14% Similarity=0.130 Sum_probs=33.7
Q ss_pred cCCCCCCeEEeecCC-CchHHHHHHHhCCC-EEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 128 LDIRSGMYVLDACSA-PGGKTCHLLEIADI-KLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 128 l~~~~g~~VLDlcag-~G~kt~~la~~~~~-~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
...++|++||=.++| -|..+.++|+..+. .++++|.++.+.+.++ .+|..
T Consensus 162 ~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~----~~g~~ 213 (351)
T cd08285 162 ANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAK----EYGAT 213 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH----HcCCc
Confidence 346788898887543 23344556666664 7999999998876665 45653
No 407
>PRK08303 short chain dehydrogenase; Provisional
Probab=86.54 E-value=18 Score=33.76 Aligned_cols=61 Identities=10% Similarity=0.002 Sum_probs=42.6
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCC----------hhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNN----------LSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~----------~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.|..+|-.|++ +|++..+++.+ +.+|+.++.+ +++++.+.+.++..+..+.++..|..+..
T Consensus 7 ~~k~~lITGgs-~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~ 80 (305)
T PRK08303 7 RGKVALVAGAT-RGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPE 80 (305)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHH
Confidence 36678888755 45777777654 3688888886 34666666667666666677889988754
No 408
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=86.53 E-value=9.3 Score=31.47 Aligned_cols=122 Identities=16% Similarity=0.164 Sum_probs=69.0
Q ss_pred EEeecCCCchHHHHHHHhC---C-CEEEEEeCC--hhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccc
Q psy15212 136 VLDACSAPGGKTCHLLEIA---D-IKLISVDNN--LSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 136 VLDlcag~G~kt~~la~~~---~-~~v~avD~~--~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
||=.|++ |+.+..+++.+ + ..|+.+..+ ..+++.+.+.++..+.++.++..|..+...-+-.+ +.. ..
T Consensus 3 ~lItGa~-~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~--~~~-~~-- 76 (167)
T PF00106_consen 3 VLITGAS-SGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALI--EEV-IK-- 76 (167)
T ss_dssp EEEETTT-SHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHH--HHH-HH--
T ss_pred EEEECCC-CHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccccccccccccccccccccccc--ccc-cc--
Confidence 4444444 56666665542 2 488888888 78888888888888866899999988754100000 000 00
Q ss_pred cccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHH----HHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 210 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLS----KYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 210 ~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~----~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
....+|.++..+.....+.+... +.+...+.. .....+.+.+.. +++|.+|+.+
T Consensus 77 ---~~~~ld~li~~ag~~~~~~~~~~-------~~~~~~~~~~~n~~~~~~~~~~~~~--~~~g~iv~~s 134 (167)
T PF00106_consen 77 ---RFGPLDILINNAGIFSDGSLDDL-------SEEELERVFRVNLFGPFLLAKALLP--QGGGKIVNIS 134 (167)
T ss_dssp ---HHSSESEEEEECSCTTSBSGGGS-------HHHHHHHHHHHHTHHHHHHHHHHHH--HTTEEEEEEE
T ss_pred ---ccccccccccccccccccccccc-------cchhhhhccccccceeeeeeehhee--ccccceEEec
Confidence 12579999987765544443322 222222221 122233444444 6788877765
No 409
>PRK12746 short chain dehydrogenase; Provisional
Probab=86.40 E-value=11 Score=33.48 Aligned_cols=133 Identities=13% Similarity=0.103 Sum_probs=67.2
Q ss_pred CCeEEeecCCCchHHHHHHHhCC---CEEEEE-eCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD---IKLISV-DNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~---~~v~av-D~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
+.+||=.| |+|+.+.++++.+. .+|+.+ ..+...++.+...+...+..+.++..|..+... +.-..... ...
T Consensus 6 ~~~ilItG-asg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~--i~~~~~~~-~~~ 81 (254)
T PRK12746 6 GKVALVTG-ASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESNGGKAFLIEADLNSIDG--VKKLVEQL-KNE 81 (254)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCcCCHHH--HHHHHHHH-HHH
Confidence 45777666 57889999887543 466553 556655555554454444457788899887541 10000000 000
Q ss_pred ccc-cCCCCCCEEEEccCCccccccccCCCCcccCChhHHH----HHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 209 FRF-YKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIK----KLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 209 ~~~-~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~----~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
+.. ......|.|+..+--...+.+ +..+.+... ........+++.+.+.++..|.+|+.+.
T Consensus 82 ~~~~~~~~~id~vi~~ag~~~~~~~-------~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS 147 (254)
T PRK12746 82 LQIRVGTSEIDILVNNAGIGTQGTI-------ENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISS 147 (254)
T ss_pred hccccCCCCccEEEECCCCCCCCCh-------hhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECC
Confidence 000 011368999876522211111 111222222 2223344566666776677788777643
No 410
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=86.21 E-value=5.4 Score=38.07 Aligned_cols=48 Identities=19% Similarity=0.172 Sum_probs=33.9
Q ss_pred cCCCCCCeEEeecCCCchHH---HHHHHhCCC-EEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 128 LDIRSGMYVLDACSAPGGKT---CHLLEIADI-KLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 128 l~~~~g~~VLDlcag~G~kt---~~la~~~~~-~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
..+++|++||=.|+ |+.+ .++|+..+. +|+++|.++.+.+.++ .+|+.
T Consensus 180 ~~~~~g~~vlV~G~--g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~----~~ga~ 231 (365)
T cd08277 180 AKVEPGSTVAVFGL--GAVGLSAIMGAKIAGASRIIGVDINEDKFEKAK----EFGAT 231 (365)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH----HcCCC
Confidence 34678999988764 5544 445666665 7999999999887764 35653
No 411
>PRK05866 short chain dehydrogenase; Provisional
Probab=86.18 E-value=9.8 Score=35.18 Aligned_cols=60 Identities=17% Similarity=0.227 Sum_probs=45.1
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+.+||=.|+ +|+.+.++++.+ +.+|++++.+.+.++.+.+.+...+..+.++..|..+..
T Consensus 40 ~k~vlItGa-sggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~ 102 (293)
T PRK05866 40 GKRILLTGA-SSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLD 102 (293)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHH
Confidence 456776664 577888887654 369999999999988888877766666778889987643
No 412
>PRK12747 short chain dehydrogenase; Provisional
Probab=86.17 E-value=9.9 Score=33.84 Aligned_cols=132 Identities=11% Similarity=0.116 Sum_probs=66.9
Q ss_pred CCeEEeecCCCchHHHHHHHhCC---CEEEEEe-CChhHHHHHHHHHHHcCCceEEEecCccccch-hhhhhhhcccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD---IKLISVD-NNLSRLNMISENLKRLNLKATLILSDISKINL-KKLYIDINKKTNN 207 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~---~~v~avD-~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~-~~~~~~~~~~~~~ 207 (329)
|..+|=.|+ +|+.+.++++.+. ..|+..+ .+...++.+...+...+..+..+..|..+... ....-........
T Consensus 4 ~k~~lItGa-s~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (252)
T PRK12747 4 GKVALVTGA-SRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQN 82 (252)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHhcCCceEEEecccCCHHHHHHHHHHHHHHhhh
Confidence 556776764 4567888876543 5776654 45566666655565555556667778776430 0000000000000
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHH----HHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKK----LSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~----l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
. +.....|.++.++--+..+.+. ..+.++... ...--..+++.+++.++.+|++|+.+
T Consensus 83 ~---~g~~~id~lv~~Ag~~~~~~~~-------~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~is 144 (252)
T PRK12747 83 R---TGSTKFDILINNAGIGPGAFIE-------ETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINIS 144 (252)
T ss_pred h---cCCCCCCEEEECCCcCCCCCcc-------cCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEEC
Confidence 0 0113689998876432222111 112222221 12223446666777777778888764
No 413
>PRK12829 short chain dehydrogenase; Provisional
Probab=86.16 E-value=10 Score=33.81 Aligned_cols=63 Identities=21% Similarity=0.196 Sum_probs=44.6
Q ss_pred cCCCCCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 128 LDIRSGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 128 l~~~~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+..-++.++|-.|++ |+.+.++++.+ +.+|++++.++..++.+.+...+. ++.++..|+.+..
T Consensus 6 ~~~~~~~~vlItGa~-g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~D~~~~~ 71 (264)
T PRK12829 6 LKPLDGLRVLVTGGA-SGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGA--KVTATVADVADPA 71 (264)
T ss_pred hhccCCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcC--ceEEEEccCCCHH
Confidence 334467899988775 77888877654 368999999988777665554432 4677888887644
No 414
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=86.00 E-value=7.5 Score=34.18 Aligned_cols=74 Identities=15% Similarity=0.238 Sum_probs=50.8
Q ss_pred EEEechhHHHHhhhc--CCCCCCeEEeecCCCchHHHHHHHhC---C--CEEEEEeCChhHHHHHHHHHHHcCCc-eEEE
Q psy15212 114 CSIQDAAAQLAAPLL--DIRSGMYVLDACSAPGGKTCHLLEIA---D--IKLISVDNNLSRLNMISENLKRLNLK-ATLI 185 (329)
Q Consensus 114 ~~~Qd~~s~l~~~~l--~~~~g~~VLDlcag~G~kt~~la~~~---~--~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~ 185 (329)
=.+|.++-+..-+.| ..+| +.|++.|..-||-++..|..+ | .+|+++|++-.-+...... ++ +.++
T Consensus 50 p~~k~p~D~~~yQellw~~~P-~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~p~i~f~ 123 (237)
T COG3510 50 PCIKSPSDMWNYQELLWELQP-SLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----VPDILFI 123 (237)
T ss_pred cccCCHHHHHHHHHHHHhcCC-ceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----CCCeEEE
Confidence 344555555444432 2344 599999999999998887654 2 5999999987665543332 44 8899
Q ss_pred ecCccccc
Q psy15212 186 LSDISKIN 193 (329)
Q Consensus 186 ~~D~~~~~ 193 (329)
.++.+.+.
T Consensus 124 egss~dpa 131 (237)
T COG3510 124 EGSSTDPA 131 (237)
T ss_pred eCCCCCHH
Confidence 99988765
No 415
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=85.96 E-value=24 Score=32.29 Aligned_cols=124 Identities=15% Similarity=0.132 Sum_probs=76.2
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
..+|.. |..-+|+=-.+.++.... -++.++|+.++-...+++|+. -+-++++..+|...-. ..
T Consensus 87 lN~~~~-l~~YpGSP~lA~~llR~q-DRl~l~ELHp~D~~~L~~~f~-~d~~vrv~~~DG~~~l-~a------------- 149 (279)
T COG2961 87 LNPGGG-LRYYPGSPLLARQLLREQ-DRLVLTELHPSDAPLLRNNFA-GDRRVRVLRGDGFLAL-KA------------- 149 (279)
T ss_pred hCCCCC-cccCCCCHHHHHHHcchh-ceeeeeecCccHHHHHHHHhC-CCcceEEEecCcHHHH-hh-------------
Confidence 344544 666666655554444322 599999999999999999998 2334889999975432 00
Q ss_pred cccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHHH
Q psy15212 210 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAII 289 (329)
Q Consensus 210 ~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~ 289 (329)
...+.++=-.||+|||+- .+++...+.+ -|+++++-. ++|+. |-+.|--+-+.++.
T Consensus 150 ~LPP~erRglVLIDPPfE---------------~~~eY~rvv~----~l~~~~kRf-~~g~y----aiWYPik~r~~~~~ 205 (279)
T COG2961 150 HLPPKERRGLVLIDPPFE---------------LKDEYQRVVE----ALAEAYKRF-ATGTY----AIWYPIKDRRQIRR 205 (279)
T ss_pred hCCCCCcceEEEeCCCcc---------------cccHHHHHHH----HHHHHHHhh-cCceE----EEEEeecchHHHHH
Confidence 001223456999999965 1223333332 334444333 45543 23678888888999
Q ss_pred HHhhC
Q psy15212 290 FSKNH 294 (329)
Q Consensus 290 ~l~~~ 294 (329)
|++..
T Consensus 206 f~~~L 210 (279)
T COG2961 206 FLRAL 210 (279)
T ss_pred HHHHH
Confidence 98765
No 416
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=85.96 E-value=12 Score=33.87 Aligned_cols=133 Identities=10% Similarity=0.032 Sum_probs=65.0
Q ss_pred CCCeEEeecCCCc-hHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccc
Q psy15212 132 SGMYVLDACSAPG-GKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 132 ~g~~VLDlcag~G-~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
.|..+|=.|++.| |.+..+++.+ +.+|+.++.+....+.+++..+..|.. .++..|+.+... +.--.+. ..
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g~~-~~~~~Dv~~~~~--v~~~~~~-~~- 81 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIGCN-FVSELDVTNPKS--ISNLFDD-IK- 81 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcCCc-eEEEccCCCHHH--HHHHHHH-HH-
Confidence 3567888888775 6666666543 368888887743333344433333432 355788877531 0000000 00
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHH----HHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLS----KYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~----~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
...+..|.++.++-......+. .+ .+..+.++..... .-...+++.+...++.+|++|..+.
T Consensus 82 ----~~~g~iDilVnnag~~~~~~~~-~~--~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~isS 147 (260)
T PRK06603 82 ----EKWGSFDFLLHGMAFADKNELK-GR--YVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLTY 147 (260)
T ss_pred ----HHcCCccEEEEccccCCccccc-Cc--cccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEec
Confidence 0125689888755322110000 01 1122233322221 2233456666777777888876543
No 417
>PRK05650 short chain dehydrogenase; Provisional
Probab=85.89 E-value=6.8 Score=35.41 Aligned_cols=58 Identities=14% Similarity=-0.024 Sum_probs=43.0
Q ss_pred eEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 135 YVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 135 ~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+||-.| |+|+.+.++++.+ +.+|+.++.+...++.+...+...+-.+.++.+|..+..
T Consensus 2 ~vlVtG-asggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~ 62 (270)
T PRK05650 2 RVMITG-AASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYS 62 (270)
T ss_pred EEEEec-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHH
Confidence 455454 5677888877654 369999999998888887777776666778888987643
No 418
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=85.84 E-value=4.7 Score=38.27 Aligned_cols=101 Identities=22% Similarity=0.283 Sum_probs=61.3
Q ss_pred CCCCCCeEEeecCC--CchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhccc
Q psy15212 129 DIRSGMYVLDACSA--PGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKK 204 (329)
Q Consensus 129 ~~~~g~~VLDlcag--~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~ 204 (329)
..++|++||=.|++ -|..++++|+..++.++++-.+++..+ .++++|.. +.....|..+.- .
T Consensus 139 ~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~----~~~~lGAd~vi~y~~~~~~~~v-~--------- 204 (326)
T COG0604 139 GLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLE----LLKELGADHVINYREEDFVEQV-R--------- 204 (326)
T ss_pred CCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHH----HHHhcCCCEEEcCCcccHHHHH-H---------
Confidence 47889999988753 456778888877756666666665444 45566765 233333322211 0
Q ss_pred ccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 205 TNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 205 ~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
....+..+|.|+ |+- | .+.+..+++.|+++|+++....+
T Consensus 205 -----~~t~g~gvDvv~-D~v--G--------------------------~~~~~~~l~~l~~~G~lv~ig~~ 243 (326)
T COG0604 205 -----ELTGGKGVDVVL-DTV--G--------------------------GDTFAASLAALAPGGRLVSIGAL 243 (326)
T ss_pred -----HHcCCCCceEEE-ECC--C--------------------------HHHHHHHHHHhccCCEEEEEecC
Confidence 111334799997 221 0 13466678889999999876553
No 419
>PRK12744 short chain dehydrogenase; Provisional
Probab=85.63 E-value=8.8 Score=34.34 Aligned_cols=129 Identities=15% Similarity=0.105 Sum_probs=68.0
Q ss_pred CCeEEeecCCCchHHHHHHHhCC---CEEEEEeCC----hhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD---IKLISVDNN----LSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKT 205 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~----~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~ 205 (329)
+.+||=.| |+|+.+.++++.+. .+|+.++.+ ....+.+.+.++..+..+.++..|..+.. .+.-.... .
T Consensus 8 ~k~vlItG-a~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~--~~~~~~~~-~ 83 (257)
T PRK12744 8 GKVVLIAG-GAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAA--AVEKLFDD-A 83 (257)
T ss_pred CcEEEEEC-CCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHH--HHHHHHHH-H
Confidence 55777666 56678888886543 466666543 34444555555555656778889988653 11000000 0
Q ss_pred cccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH----HHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 206 NNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL----SKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 206 ~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l----~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
. . ..+..|.++..+- .....+ .+..+.++.... ..-...+++.+.+.++++|.+++.++|
T Consensus 84 ~---~--~~~~id~li~~ag-----~~~~~~--~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss 147 (257)
T PRK12744 84 K---A--AFGRPDIAINTVG-----KVLKKP--IVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTS 147 (257)
T ss_pred H---H--hhCCCCEEEECCc-----ccCCCC--cccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecc
Confidence 0 0 1146899887652 211111 122223333221 112234677777778888887775444
No 420
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=85.59 E-value=12 Score=33.60 Aligned_cols=129 Identities=12% Similarity=0.120 Sum_probs=66.9
Q ss_pred CCCeEEeecCC-CchHHHHHHHhCC---CEEEEEeCCh--hHHHHHHHHHHHcCCceEEEecCccccch-hhhhhhhccc
Q psy15212 132 SGMYVLDACSA-PGGKTCHLLEIAD---IKLISVDNNL--SRLNMISENLKRLNLKATLILSDISKINL-KKLYIDINKK 204 (329)
Q Consensus 132 ~g~~VLDlcag-~G~kt~~la~~~~---~~v~avD~~~--~rl~~l~~n~~~~g~~v~~~~~D~~~~~~-~~~~~~~~~~ 204 (329)
.|..+|=.|+| ++|.+..+++.+. .+|+..+.+. +.++.+.+ ..+-.+..+..|..+... ..+. +
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~---~~~~~~~~~~~Dv~~~~~i~~~~-~---- 77 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAK---RLPEPAPVLELDVTNEEHLASLA-D---- 77 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHH---hcCCCCcEEeCCCCCHHHHHHHH-H----
Confidence 36789999986 6888888887543 6888888753 33343333 223245677888877541 0000 0
Q ss_pred ccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHH----HHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 205 TNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKK----LSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 205 ~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~----l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
. . ....+.+|.++.++--.....+. .+ ....+.++... ...-...+.+.+...++++|.+|..+
T Consensus 78 --~-~-~~~~g~iD~li~nAG~~~~~~~~-~~--~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is 145 (256)
T PRK07889 78 --R-V-REHVDGLDGVVHSIGFAPQSALG-GN--FLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLD 145 (256)
T ss_pred --H-H-HHHcCCCcEEEEccccccccccC-CC--cccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEe
Confidence 0 0 00125799998766321100000 01 00111222221 11122345666777788889887654
No 421
>PRK07478 short chain dehydrogenase; Provisional
Probab=85.58 E-value=13 Score=33.06 Aligned_cols=60 Identities=10% Similarity=0.126 Sum_probs=44.9
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+..+|=.|+ +|+.+.++++.+ +.+|+.++.++..++.+.+.++..+.++.++..|..+..
T Consensus 6 ~k~~lItGa-s~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 68 (254)
T PRK07478 6 GKVAIITGA-SSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEA 68 (254)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHH
Confidence 556776655 467777777653 369999999999988888888777766778888987754
No 422
>PRK07985 oxidoreductase; Provisional
Probab=85.51 E-value=15 Score=33.85 Aligned_cols=129 Identities=9% Similarity=-0.063 Sum_probs=69.8
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC---CEEEEEeCC--hhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD---IKLISVDNN--LSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~--~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
.|.++|-.|+ +|+.+.++++.+. .+|+.++.+ ....+.+.+.+...+..+.++..|+.+... +.-..+..
T Consensus 48 ~~k~vlITGa-s~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~--~~~~~~~~-- 122 (294)
T PRK07985 48 KDRKALVTGG-DSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKF--ARSLVHEA-- 122 (294)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHH--HHHHHHHH--
Confidence 4568888885 5777887776543 578877654 345666666666666667778889887431 00000000
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH----HHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL----SKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l----~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
...-+..|.++..+--+. ..... ...+.++.... ..-...+++.+.+.++.+|.+|+.+
T Consensus 123 ----~~~~g~id~lv~~Ag~~~--~~~~~----~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iS 185 (294)
T PRK07985 123 ----HKALGGLDIMALVAGKQV--AIPDI----ADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTS 185 (294)
T ss_pred ----HHHhCCCCEEEECCCCCc--CCCCh----hhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEEC
Confidence 001246898887653210 00000 11122333222 2223356677777777889888753
No 423
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=85.49 E-value=7.3 Score=34.50 Aligned_cols=129 Identities=12% Similarity=-0.008 Sum_probs=68.0
Q ss_pred CCeEEeecCCCchHHHHHHHhCC---CEEEEEe-CChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD---IKLISVD-NNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~---~~v~avD-~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
+.+||-.| |+|+.+.++++.+. ..++.+. .+..........+...+..+.++..|..+.. .+.-..+ ..
T Consensus 6 ~~~vlitG-asg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~--~~~~~~~----~~ 78 (252)
T PRK06077 6 DKVVVVTG-SGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVSTRE--GCETLAK----AT 78 (252)
T ss_pred CcEEEEeC-CCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCCHH--HHHHHHH----HH
Confidence 56788777 56778888876543 4665543 4455555544555555555667778887643 0000000 00
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHH----HHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKK----LSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~----l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
.. .-...|.|+..+.....+.+. ..+.+.... ...-...+++.+.+.++.+|.+++.+..
T Consensus 79 ~~--~~~~~d~vi~~ag~~~~~~~~-------~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~ 142 (252)
T PRK06077 79 ID--RYGVADILVNNAGLGLFSPFL-------NVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASV 142 (252)
T ss_pred HH--HcCCCCEEEECCCCCCCCChh-------hCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcch
Confidence 00 014689999877543222211 111111111 1122344566667777778888887654
No 424
>PRK05872 short chain dehydrogenase; Provisional
Probab=85.47 E-value=6.5 Score=36.33 Aligned_cols=60 Identities=18% Similarity=0.254 Sum_probs=40.4
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.|.+||-.|+ +|+.+.++++.+. .+|+.++.++..++.+.+.+.. +..+..+..|..+..
T Consensus 8 ~gk~vlItGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~-~~~~~~~~~Dv~d~~ 70 (296)
T PRK05872 8 AGKVVVVTGA-ARGIGAELARRLHARGAKLALVDLEEAELAALAAELGG-DDRVLTVVADVTDLA 70 (296)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC-CCcEEEEEecCCCHH
Confidence 4667887764 5667777776543 6999999998887766655432 333555668887643
No 425
>PRK07102 short chain dehydrogenase; Provisional
Probab=85.44 E-value=9.5 Score=33.76 Aligned_cols=58 Identities=14% Similarity=0.107 Sum_probs=41.2
Q ss_pred eEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHc-CCceEEEecCccccc
Q psy15212 135 YVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRL-NLKATLILSDISKIN 193 (329)
Q Consensus 135 ~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~-g~~v~~~~~D~~~~~ 193 (329)
+|+-.| |+|+.+.++++.+- .+|++++.++...+.+.+.+... +..+.++.+|..+..
T Consensus 3 ~vlItG-as~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~ 64 (243)
T PRK07102 3 KILIIG-ATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTA 64 (243)
T ss_pred EEEEEc-CCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChH
Confidence 566555 56788888776543 59999999998887666665443 234788889988753
No 426
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=85.34 E-value=11 Score=34.29 Aligned_cols=130 Identities=12% Similarity=0.065 Sum_probs=67.4
Q ss_pred CCCeEEeecCCC-chHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccch-hhhhhhhccccc
Q psy15212 132 SGMYVLDACSAP-GGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINL-KKLYIDINKKTN 206 (329)
Q Consensus 132 ~g~~VLDlcag~-G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~-~~~~~~~~~~~~ 206 (329)
.|..+|-.|++. +|.+..+|+.+ +.+|+.++.+....+.+++..+..|. ...+..|+.+... ..+. +
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~-~~~~~~Dv~d~~~v~~~~-~------ 77 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGS-DFVLPCDVEDIASVDAVF-E------ 77 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCC-ceEEeCCCCCHHHHHHHH-H------
Confidence 367899999886 47777777654 36888888776544444444444443 2356788877541 0000 0
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCC--CCcccCChhHHHHHH----HHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNP--DIPWLRRKNDIKKLS----KYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p--~~~~~~~~~~~~~l~----~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
. . ....+..|.++.++- .....| ......+.++..... .--..+++.++..++.+|.+|..+.
T Consensus 78 ~-~-~~~~g~iD~lVnnAG-----~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~~G~Iv~isS 146 (271)
T PRK06505 78 A-L-EKKWGKLDFVVHAIG-----FSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPDGGSMLTLTY 146 (271)
T ss_pred H-H-HHHhCCCCEEEECCc-----cCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhccCceEEEEcC
Confidence 0 0 001257899887663 211110 000112223222211 1123355666677777788877543
No 427
>PRK08278 short chain dehydrogenase; Provisional
Probab=85.29 E-value=8 Score=35.20 Aligned_cols=130 Identities=9% Similarity=0.061 Sum_probs=68.7
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhH-------HHHHHHHHHHcCCceEEEecCccccchhhhhhhh
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSR-------LNMISENLKRLNLKATLILSDISKINLKKLYIDI 201 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~r-------l~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~ 201 (329)
.|.++|=.|| +|+.+.++++.+. ..|+.++.+... ++.+.+.+...+.++.++.+|+++.. .+.-..
T Consensus 5 ~~k~vlItGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~--~i~~~~ 81 (273)
T PRK08278 5 SGKTLFITGA-SRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDED--QVAAAV 81 (273)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHH--HHHHHH
Confidence 3556775555 6778888876543 689998886542 44444555555666778889987754 110000
Q ss_pred cccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH----HHHHHHHHHHHHhcCC--CCCEEEEEc
Q psy15212 202 NKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL----SKYSCKILNNLWKMLK--PGGKLLFVT 275 (329)
Q Consensus 202 ~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l----~~~q~~lL~~a~~~Lk--pgG~lvysT 275 (329)
.. -.. .-+.+|.|+..+.....+.+ +..+.++.... ..-...+++.+...++ .+|.+++.+
T Consensus 82 ~~----~~~--~~g~id~li~~ag~~~~~~~-------~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~is 148 (273)
T PRK08278 82 AK----AVE--RFGGIDICVNNASAINLTGT-------EDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLS 148 (273)
T ss_pred HH----HHH--HhCCCCEEEECCCCcCCCCc-------ccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 00 000 11468999988754332221 11222222211 1223445555555554 357777765
Q ss_pred CC
Q psy15212 276 CS 277 (329)
Q Consensus 276 CS 277 (329)
..
T Consensus 149 s~ 150 (273)
T PRK08278 149 PP 150 (273)
T ss_pred Cc
Confidence 43
No 428
>PRK06196 oxidoreductase; Provisional
Probab=85.27 E-value=13 Score=34.72 Aligned_cols=82 Identities=10% Similarity=0.113 Sum_probs=50.8
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
.|.+||=.| |+|+.+.++++.+. .+|++++.++.+++.+...+.. +.++.+|..+... +.--.. .
T Consensus 25 ~~k~vlITG-asggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~~----v~~~~~Dl~d~~~--v~~~~~-----~ 92 (315)
T PRK06196 25 SGKTAIVTG-GYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGIDG----VEVVMLDLADLES--VRAFAE-----R 92 (315)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhh----CeEEEccCCCHHH--HHHHHH-----H
Confidence 356788777 45778888887543 5999999998877766554432 5678889887541 100000 0
Q ss_pred ccccCCCCCCEEEEccCC
Q psy15212 209 FRFYKNKYFDRILADLPC 226 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PC 226 (329)
+ .......|.|+.++..
T Consensus 93 ~-~~~~~~iD~li~nAg~ 109 (315)
T PRK06196 93 F-LDSGRRIDILINNAGV 109 (315)
T ss_pred H-HhcCCCCCEEEECCCC
Confidence 0 0012468999988754
No 429
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=85.11 E-value=6.1 Score=36.96 Aligned_cols=46 Identities=22% Similarity=0.266 Sum_probs=34.0
Q ss_pred hcCCCCCCeEEeecCCC-chHHHHHHHhCCCEEEEEeCChhHHHHHH
Q psy15212 127 LLDIRSGMYVLDACSAP-GGKTCHLLEIADIKLISVDNNLSRLNMIS 172 (329)
Q Consensus 127 ~l~~~~g~~VLDlcag~-G~kt~~la~~~~~~v~avD~~~~rl~~l~ 172 (329)
...+++|++||-.++|. |..+.++|+..+.+|+++..++++.+.++
T Consensus 154 ~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~ 200 (337)
T cd08261 154 RAGVTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFAR 200 (337)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHH
Confidence 34567899999986543 55667777777789999988888776653
No 430
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=85.03 E-value=8.7 Score=34.41 Aligned_cols=60 Identities=12% Similarity=0.124 Sum_probs=41.8
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.|.+||=.|++ |+.+..+++.+ +..|+.++.+ ...+.+.+.+...+-.+.++..|..+..
T Consensus 14 ~~k~vlItGas-~gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 76 (258)
T PRK06935 14 DGKVAIVTGGN-TGLGQGYAVALAKAGADIIITTHG-TNWDETRRLIEKEGRKVTFVQVDLTKPE 76 (258)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHHhcCCceEEEEcCCCCHH
Confidence 36678877764 56777776554 3688888887 5566666666666655778889988754
No 431
>KOG4174|consensus
Probab=85.01 E-value=24 Score=32.28 Aligned_cols=144 Identities=17% Similarity=0.144 Sum_probs=85.5
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhH------HHHHHHH---HHHcCCceEEEecCccccchhhhhh
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSR------LNMISEN---LKRLNLKATLILSDISKINLKKLYI 199 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~r------l~~l~~n---~~~~g~~v~~~~~D~~~~~~~~~~~ 199 (329)
...+||-+|=|-=.++..++...+ +.|+|..++..- .-.++.| ++++|+.| +...|++.+...
T Consensus 56 ~~~~ill~gEgdFSfs~sl~~~~g~sa~ni~atSlDsk~~dl~~KY~~~~~nv~~Lk~lG~~I-~h~Vdv~sl~~~---- 130 (282)
T KOG4174|consen 56 KKQKILLVGEGDFSFSLSLAPHFGRSAGNITATSLDSKEFDLKQKYPDAKENVEALKRLGGTI-LHGVDVTSLKFH---- 130 (282)
T ss_pred ccccEEEecccchhhHHHHHHHhCccccceeeeeccchhhhhhhcccchHHHHHHHHHcCCce-EecccceeEEec----
Confidence 356888888888888888887766 445444443322 2234445 45566542 333455554310
Q ss_pred hhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCC
Q psy15212 200 DINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLK-PGGKLLFVTCSL 278 (329)
Q Consensus 200 ~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~Lk-pgG~lvysTCS~ 278 (329)
..+.-+.||.|+-+-|-+|.|.- ...+ ..-+....++-+.+|+.|-.+|+ ..|.++.+--+.
T Consensus 131 ----------~~~~~~~~d~IiFNFPH~G~g~~-~e~d------~~~i~~~qkL~rgFle~akemL~~edGeI~itlk~t 193 (282)
T KOG4174|consen 131 ----------ADLRLQRYDNIIFNFPHSGKGIK-FEQD------RNIIPLHQKLFRGFLESAKEMLKDEDGEIHITLKTT 193 (282)
T ss_pred ----------ccccccccceEEEcCCCCCCCcc-cccc------hHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccC
Confidence 01234789999999999999874 1111 11122355677889999999999 778777653222
Q ss_pred CccccHHHHHHHHhhCCCcEE
Q psy15212 279 WFEESEEQAIIFSKNHKDSIR 299 (329)
Q Consensus 279 ~~~Ene~vv~~~l~~~~~~~~ 299 (329)
.| -|...++.+.+.. +..+
T Consensus 194 ~P-~~~W~ik~Lak~~-gl~L 212 (282)
T KOG4174|consen 194 YP-FNPWNIKFLAKEF-GLTL 212 (282)
T ss_pred CC-CchhhhhHhhhhc-cccc
Confidence 33 2446666555443 4443
No 432
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=84.97 E-value=6.3 Score=36.93 Aligned_cols=43 Identities=9% Similarity=0.167 Sum_probs=30.5
Q ss_pred cCCCCCCeEEeecCCCchHH---HHHHHhCCCEEEEEeCChhHHHHHH
Q psy15212 128 LDIRSGMYVLDACSAPGGKT---CHLLEIADIKLISVDNNLSRLNMIS 172 (329)
Q Consensus 128 l~~~~g~~VLDlcag~G~kt---~~la~~~~~~v~avD~~~~rl~~l~ 172 (329)
+.+++|++||=.|+ |..+ .++|+.++.+|++++.++++++.++
T Consensus 159 ~~~~~~~~vlV~g~--g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~ 204 (333)
T cd08296 159 SGAKPGDLVAVQGI--GGLGHLAVQYAAKMGFRTVAISRGSDKADLAR 204 (333)
T ss_pred cCCCCCCEEEEECC--cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Confidence 45778888888763 4444 4455556678999999988877663
No 433
>KOG4058|consensus
Probab=84.91 E-value=1.7 Score=36.42 Aligned_cols=63 Identities=13% Similarity=0.001 Sum_probs=50.9
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKIN 193 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~ 193 (329)
.+..+.+|+|+|-|..-++.++..--..+++|+++-.+...+-..-|.|+. ..+..-|.-+.+
T Consensus 71 n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~d 135 (199)
T KOG4058|consen 71 NPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVD 135 (199)
T ss_pred CCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcc
Confidence 454589999999999999888643357899999999998888888888885 677777777665
No 434
>PRK08265 short chain dehydrogenase; Provisional
Probab=84.81 E-value=13 Score=33.54 Aligned_cols=57 Identities=14% Similarity=0.124 Sum_probs=38.6
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+.++|=.| |+|+.+.++++.+ +.+|+.+|.+...++.+.+. .+.++.++.+|..+..
T Consensus 6 ~k~vlItG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~---~~~~~~~~~~Dl~~~~ 65 (261)
T PRK08265 6 GKVAIVTG-GATLIGAAVARALVAAGARVAIVDIDADNGAAVAAS---LGERARFIATDITDDA 65 (261)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---hCCeeEEEEecCCCHH
Confidence 55777666 4567777777654 36999999988766554433 3445778888987753
No 435
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=84.80 E-value=12 Score=33.18 Aligned_cols=60 Identities=12% Similarity=0.096 Sum_probs=43.9
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCcc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDIS 190 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~ 190 (329)
..++.+||=.| |+|+.+..+++.+ +.+|++++.+...++.+.+.+...+.. +.++..|+.
T Consensus 9 ~~~~k~vlItG-~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~ 72 (247)
T PRK08945 9 LLKDRIILVTG-AGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLL 72 (247)
T ss_pred ccCCCEEEEeC-CCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEeccc
Confidence 34577888887 4677888777654 359999999998888877777766543 667777775
No 436
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=84.76 E-value=7.5 Score=34.44 Aligned_cols=59 Identities=12% Similarity=0.113 Sum_probs=40.6
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.|.+||=.|++ |+.+.++++.+- ..|+.++.+. ...+.+.+++.+..+.++..|+.+..
T Consensus 4 ~~k~vlItGas-~gIG~~ia~~l~~~G~~vi~~~r~~--~~~~~~~~~~~~~~~~~~~~D~~~~~ 65 (248)
T TIGR01832 4 EGKVALVTGAN-TGLGQGIAVGLAEAGADIVGAGRSE--PSETQQQVEALGRRFLSLTADLSDIE 65 (248)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCch--HHHHHHHHHhcCCceEEEECCCCCHH
Confidence 36678877774 667777776543 5899988764 34455556666655788889988754
No 437
>PRK06138 short chain dehydrogenase; Provisional
Probab=84.52 E-value=12 Score=33.04 Aligned_cols=59 Identities=8% Similarity=0.110 Sum_probs=42.3
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
|.++|=.|| +|+.+.++++.+ +.+|++++.+...+......+. .+..+.++.+|..+..
T Consensus 5 ~k~~lItG~-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~ 66 (252)
T PRK06138 5 GRVAIVTGA-GSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-AGGRAFARQGDVGSAE 66 (252)
T ss_pred CcEEEEeCC-CchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-cCCeEEEEEcCCCCHH
Confidence 456776665 577888887653 2589999998887776666655 4555788889988754
No 438
>PRK08589 short chain dehydrogenase; Validated
Probab=84.48 E-value=11 Score=34.10 Aligned_cols=60 Identities=15% Similarity=0.039 Sum_probs=42.0
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.|.++|=.|+ +|+.+.++++.+ +.+|+.++.+ ..++.+.+.++..+.++.++..|..+..
T Consensus 5 ~~k~vlItGa-s~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~ 67 (272)
T PRK08589 5 ENKVAVITGA-STGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISDEQ 67 (272)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCCHH
Confidence 3556776655 456777777654 3699999998 6777766677666666778888987653
No 439
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=84.14 E-value=16 Score=33.22 Aligned_cols=133 Identities=10% Similarity=-0.003 Sum_probs=68.8
Q ss_pred CCCeEEeecCC-CchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccc
Q psy15212 132 SGMYVLDACSA-PGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 132 ~g~~VLDlcag-~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
.|..+|=.|++ ++|.+..+|+.+. .+|+.++.+....+.+++..+..+. ...+..|..+... +.--.. .
T Consensus 9 ~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~~-~~~~~~Dl~~~~~--v~~~~~----~ 81 (272)
T PRK08159 9 AGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELGA-FVAGHCDVTDEAS--IDAVFE----T 81 (272)
T ss_pred cCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcCC-ceEEecCCCCHHH--HHHHHH----H
Confidence 35678888887 5889988887653 5887776654333444444444442 3457788876431 100000 0
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH----HHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL----SKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l----~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
. ....+..|.++.++-....+... .| .+..+.++.... ..-...+++.+...++.+|.++..+.
T Consensus 82 -~-~~~~g~iD~lv~nAG~~~~~~~~-~~--~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~iss 149 (272)
T PRK08159 82 -L-EKKWGKLDFVVHAIGFSDKDELT-GR--YVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLTY 149 (272)
T ss_pred -H-HHhcCCCcEEEECCcccCccccc-cC--cccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 0 00124689999877432110000 00 011122222222 12234566677777777888876653
No 440
>KOG3673|consensus
Probab=84.07 E-value=3.8 Score=41.23 Aligned_cols=45 Identities=13% Similarity=0.209 Sum_probs=28.3
Q ss_pred CCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHH--HHHhcCCCCCEEE
Q psy15212 215 KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILN--NLWKMLKPGGKLL 272 (329)
Q Consensus 215 ~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~--~a~~~LkpgG~lv 272 (329)
........|.-.|-.| ++.++....-|.-+.. -|+.++++||.++
T Consensus 351 ~GVHf~MADGGFSVEG-------------QeNiQEILSKqLyLCQfL~aL~IvR~gG~F~ 397 (845)
T KOG3673|consen 351 LGVHFMMADGGFSVEG-------------QENIQEILSKQLYLCQFLVALCIVREGGNFF 397 (845)
T ss_pred cceEEEEecCCccccc-------------hhhHHHHHHHHHHHHHHHHHheeeecCCeEE
Confidence 3456666666555333 3556666555544333 5678999999887
No 441
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=84.04 E-value=5.4 Score=37.35 Aligned_cols=45 Identities=24% Similarity=0.295 Sum_probs=31.9
Q ss_pred CCCCCCeEEeecCC-CchHHHHHHHhCC-CEEEEEeCChhHHHHHHH
Q psy15212 129 DIRSGMYVLDACSA-PGGKTCHLLEIAD-IKLISVDNNLSRLNMISE 173 (329)
Q Consensus 129 ~~~~g~~VLDlcag-~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~ 173 (329)
.+++|++||-.++| .|..+.++|+..+ ..|++++.++.+.+.+++
T Consensus 164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~ 210 (347)
T cd05278 164 GIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKE 210 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence 46788999996653 2556666777777 489999888877765543
No 442
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=84.04 E-value=2.4 Score=39.11 Aligned_cols=49 Identities=16% Similarity=0.127 Sum_probs=41.0
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcC
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLN 179 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g 179 (329)
-.+|+.|||..+|+|....+.. .++...+++|+++.-++.+.+++.+..
T Consensus 220 s~~~diVlDpf~GsGtt~~aa~-~~~r~~ig~e~~~~y~~~~~~r~~~~~ 268 (302)
T COG0863 220 SFPGDIVLDPFAGSGTTGIAAK-NLGRRFIGIEINPEYVEVALKRLQEGL 268 (302)
T ss_pred CCCCCEEeecCCCCChHHHHHH-HcCCceEEEecCHHHHHHHHHHHHhhc
Confidence 4679999999999997766555 455689999999999999999988653
No 443
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=83.91 E-value=19 Score=36.97 Aligned_cols=64 Identities=13% Similarity=0.181 Sum_probs=45.0
Q ss_pred CCCCCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHc-----CC----ceEEEecCccccc
Q psy15212 129 DIRSGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRL-----NL----KATLILSDISKIN 193 (329)
Q Consensus 129 ~~~~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~-----g~----~v~~~~~D~~~~~ 193 (329)
+.+.|..||=.|+ +|+.+.++++.+ |.+|++++.+..+++.+.+.+... |. .+.++.+|+.+..
T Consensus 76 ~~~~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~e 151 (576)
T PLN03209 76 DTKDEDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPD 151 (576)
T ss_pred ccCCCCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHH
Confidence 3456767776665 688888887654 358999999999887776665442 21 2678889988754
No 444
>PRK12743 oxidoreductase; Provisional
Probab=83.80 E-value=15 Score=32.87 Aligned_cols=60 Identities=10% Similarity=0.060 Sum_probs=43.0
Q ss_pred CCeEEeecCCCchHHHHHHHhCC---CEEEEEe-CChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD---IKLISVD-NNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~---~~v~avD-~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+.+||=.|+ +|+.+.++++.+- .+|+.++ .+...++.+...++..+..+.++..|..+..
T Consensus 2 ~k~vlItGa-s~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~ 65 (256)
T PRK12743 2 AQVAIVTAS-DSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLP 65 (256)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHH
Confidence 346777775 5678888887543 5777764 4666777777777777777888899988754
No 445
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=83.72 E-value=15 Score=34.08 Aligned_cols=44 Identities=9% Similarity=0.081 Sum_probs=32.2
Q ss_pred cCCCCCCeEEeecCC-CchHHHHHHHhCCCEEEEEeCChhHHHHH
Q psy15212 128 LDIRSGMYVLDACSA-PGGKTCHLLEIADIKLISVDNNLSRLNMI 171 (329)
Q Consensus 128 l~~~~g~~VLDlcag-~G~kt~~la~~~~~~v~avD~~~~rl~~l 171 (329)
....+|++||-.++| .|..+.++|+..+.+|++++.++.+.+.+
T Consensus 158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~ 202 (330)
T cd08245 158 AGPRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELA 202 (330)
T ss_pred hCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 456788899988664 45555556666667899999998887665
No 446
>PRK08703 short chain dehydrogenase; Provisional
Probab=83.61 E-value=16 Score=32.10 Aligned_cols=59 Identities=15% Similarity=0.125 Sum_probs=42.0
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCC-ceEEEecCccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNL-KATLILSDISK 191 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~-~v~~~~~D~~~ 191 (329)
+|.+||=.| |+|+.+.++++.+. .+|+.++.++.+++.+...+...+- .+.++..|..+
T Consensus 5 ~~k~vlItG-~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~ 67 (239)
T PRK08703 5 SDKTILVTG-ASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMS 67 (239)
T ss_pred CCCEEEEEC-CCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecc
Confidence 356788887 56778888776543 6899999999988887777765543 35566667643
No 447
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=83.53 E-value=11 Score=34.95 Aligned_cols=48 Identities=17% Similarity=0.219 Sum_probs=33.7
Q ss_pred cCCCCCCeEEeecCCCchHHHHH---HHhCCCEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 128 LDIRSGMYVLDACSAPGGKTCHL---LEIADIKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 128 l~~~~g~~VLDlcag~G~kt~~l---a~~~~~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
...++|++||=.| .|+.+..+ |+.++.+|++++.++++.+.+++ +|..
T Consensus 151 ~~~~~g~~vlV~g--~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~----~g~~ 201 (319)
T cd08242 151 VPITPGDKVAVLG--DGKLGLLIAQVLALTGPDVVLVGRHSEKLALARR----LGVE 201 (319)
T ss_pred cCCCCCCEEEEEC--CCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----cCCc
Confidence 4567888988874 45655554 45556689999999988877664 5654
No 448
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=83.44 E-value=13 Score=34.52 Aligned_cols=45 Identities=24% Similarity=0.302 Sum_probs=31.1
Q ss_pred hcCCCCCCeEEeecCC-CchHHHHHHHhCCCE-EEEEeCChhHHHHH
Q psy15212 127 LLDIRSGMYVLDACSA-PGGKTCHLLEIADIK-LISVDNNLSRLNMI 171 (329)
Q Consensus 127 ~l~~~~g~~VLDlcag-~G~kt~~la~~~~~~-v~avD~~~~rl~~l 171 (329)
....++|++||..|+| .|..+.++|+..+.+ |++++.++++.+.+
T Consensus 154 ~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~ 200 (334)
T cd08234 154 LLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELA 200 (334)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHH
Confidence 4457789999998643 134455566666644 89999998887665
No 449
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=83.44 E-value=6.3 Score=35.41 Aligned_cols=130 Identities=10% Similarity=0.070 Sum_probs=66.3
Q ss_pred CCCeEEeecCCC-chHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccch-hhhhhhhccccc
Q psy15212 132 SGMYVLDACSAP-GGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINL-KKLYIDINKKTN 206 (329)
Q Consensus 132 ~g~~VLDlcag~-G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~-~~~~~~~~~~~~ 206 (329)
.|..+|-.|++. +|.+..+++.+. .+|+.++.+....+.+++. . +-.+.++..|+.+... ..+. + . ..
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~-~--~~~~~~~~~Dl~~~~~v~~~~-~--~-~~ 78 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKL-V--DEEDLLVECDVASDESIERAF-A--T-IK 78 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhh-c--cCceeEEeCCCCCHHHHHHHH-H--H-HH
Confidence 367899999886 678888876543 6888888774322222221 1 2236678889876531 0000 0 0 00
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHH----HHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLS----KYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~----~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
. ..+.+|.++.++-......+ ..| .+..+.++..... .-...+.+.+...++.+|++++.+.
T Consensus 79 ---~--~~g~iD~lv~nAg~~~~~~~-~~~--~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~iss 144 (252)
T PRK06079 79 ---E--RVGKIDGIVHAIAYAKKEEL-GGN--VTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLTY 144 (252)
T ss_pred ---H--HhCCCCEEEEcccccccccc-cCC--cccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEec
Confidence 0 11568999887632210000 001 1112233332221 1233455666677777888776543
No 450
>PRK07832 short chain dehydrogenase; Provisional
Probab=83.44 E-value=12 Score=33.91 Aligned_cols=57 Identities=16% Similarity=0.067 Sum_probs=38.1
Q ss_pred EEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccc
Q psy15212 136 VLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKIN 193 (329)
Q Consensus 136 VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~ 193 (329)
+|=.| |+|+.+.++++.+ +..|+.++.++..++.+.+.+...+.. +.++..|..+..
T Consensus 3 vlItG-as~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 63 (272)
T PRK07832 3 CFVTG-AASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYD 63 (272)
T ss_pred EEEeC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHH
Confidence 33344 4667777776643 368999999888887777776655544 455678887643
No 451
>KOG2793|consensus
Probab=83.43 E-value=4.4 Score=36.95 Aligned_cols=54 Identities=17% Similarity=0.141 Sum_probs=34.7
Q ss_pred HHhhhcCCC-CCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHH
Q psy15212 123 LAAPLLDIR-SGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKR 177 (329)
Q Consensus 123 l~~~~l~~~-~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~ 177 (329)
+.+..+..+ ..-+||.+|+|+|--++.+|...+..+.--| .+..+..++.|..+
T Consensus 76 ~~~~~~g~~~~~~~vlELGsGtglvG~~aa~~~~~~v~ltD-~~~~~~~L~~~~~~ 130 (248)
T KOG2793|consen 76 LTATLIGFKTKYINVLELGSGTGLVGILAALLLGAEVVLTD-LPKVVENLKFNRDK 130 (248)
T ss_pred hhhccccccccceeEEEecCCccHHHHHHHHHhcceeccCC-chhhHHHHHHhhhh
Confidence 333344333 3557999999999888777765666776666 45555555555433
No 452
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=83.28 E-value=19 Score=32.31 Aligned_cols=87 Identities=9% Similarity=0.084 Sum_probs=52.7
Q ss_pred CCCeEEeecCCC-chHHHHHHHhCC---CEEEEEeCC-----------hhHHHHHHHHHHHcCCceEEEecCccccch-h
Q psy15212 132 SGMYVLDACSAP-GGKTCHLLEIAD---IKLISVDNN-----------LSRLNMISENLKRLNLKATLILSDISKINL-K 195 (329)
Q Consensus 132 ~g~~VLDlcag~-G~kt~~la~~~~---~~v~avD~~-----------~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~-~ 195 (329)
+|.+||=.|++. |+.+.++++.+. .+|+..+.+ ......+.+.+++.|..+.++..|..+... .
T Consensus 5 ~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~i~ 84 (256)
T PRK12859 5 KNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQNDAPK 84 (256)
T ss_pred CCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHH
Confidence 467899899874 688888776543 577766432 233445566677777777888899876430 0
Q ss_pred hhhhhhcccccccccccCCCCCCEEEEccCCc
Q psy15212 196 KLYIDINKKTNNRFRFYKNKYFDRILADLPCT 227 (329)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCs 227 (329)
.+.-... . .-+..|.|+.++-+.
T Consensus 85 ~~~~~~~-------~--~~g~id~li~~ag~~ 107 (256)
T PRK12859 85 ELLNKVT-------E--QLGYPHILVNNAAYS 107 (256)
T ss_pred HHHHHHH-------H--HcCCCcEEEECCCCC
Confidence 0000000 0 113589999988654
No 453
>KOG0822|consensus
Probab=83.24 E-value=1.7 Score=43.53 Aligned_cols=101 Identities=26% Similarity=0.299 Sum_probs=66.8
Q ss_pred eEEeecCCCchHHHH---HHHhCC--CEEEEEeCChhHHHHHHH-HHHHcCCceEEEecCccccchhhhhhhhccccccc
Q psy15212 135 YVLDACSAPGGKTCH---LLEIAD--IKLISVDNNLSRLNMISE-NLKRLNLKATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 135 ~VLDlcag~G~kt~~---la~~~~--~~v~avD~~~~rl~~l~~-n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
.|+=+|||-|-..-. +|+... .+++|+|.++.++..++. |++-.+-.|+++..|++.+.
T Consensus 370 VimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~--------------- 434 (649)
T KOG0822|consen 370 VIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWN--------------- 434 (649)
T ss_pred EEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccC---------------
Confidence 578899999975544 444444 699999999999988876 23333445999999999876
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEE
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 273 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvy 273 (329)
.+.++.|.++..- .|.+.-+ . +--+-|.-|-++|||.|+-+=
T Consensus 435 ---ap~eq~DI~VSEL----LGSFGDN-----E-----------LSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 435 ---APREQADIIVSEL----LGSFGDN-----E-----------LSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred ---CchhhccchHHHh----hccccCc-----c-----------CCHHHHHHHHhhcCCCceEcc
Confidence 1236788876211 1222111 0 112467888889999987763
No 454
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=83.13 E-value=18 Score=32.78 Aligned_cols=61 Identities=15% Similarity=0.047 Sum_probs=36.6
Q ss_pred CCCeEEeecCCC-chHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAP-GGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~-G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.|..+|=.|++. +|.+..+++.+. ..|+.++.+. +++...+.+....-.+..+..|+.+..
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~-~~~~~~~~~~~~~~~~~~~~~Dl~~~~ 69 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND-KLKGRVEEFAAQLGSDIVLPCDVAEDA 69 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecch-hHHHHHHHHHhccCCceEeecCCCCHH
Confidence 366788889887 488777776543 5888888763 332222222222213456778887754
No 455
>PRK08862 short chain dehydrogenase; Provisional
Probab=83.04 E-value=8 Score=34.33 Aligned_cols=60 Identities=13% Similarity=-0.053 Sum_probs=43.1
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCcccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKI 192 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~ 192 (329)
.|..+|=.|++. +.+..++..+ +..|+.++.+...++.+.+.++..+.++..+..|..+.
T Consensus 4 ~~k~~lVtGas~-GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~ 66 (227)
T PRK08862 4 KSSIILITSAGS-VLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQ 66 (227)
T ss_pred CCeEEEEECCcc-HHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCH
Confidence 356777777666 4566665443 36899999999999888887877776666677787654
No 456
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=82.98 E-value=16 Score=32.61 Aligned_cols=57 Identities=16% Similarity=0.148 Sum_probs=39.9
Q ss_pred CCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+.++|=.| |+|+.+.++++.+. .+|+.+|.+...++.+.+.+ +..+.++.+|..+..
T Consensus 6 ~~~vlItG-as~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~ 65 (257)
T PRK07067 6 GKVALLTG-AASGIGEAVAERYLAEGARVVIADIKPARARLAALEI---GPAAIAVSLDVTRQD 65 (257)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh---CCceEEEEccCCCHH
Confidence 45677665 66778888886543 69999999988777655443 334677888887653
No 457
>KOG1201|consensus
Probab=82.97 E-value=30 Score=32.40 Aligned_cols=124 Identities=17% Similarity=0.191 Sum_probs=75.3
Q ss_pred CCCeEEeecCCCch---HHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccc
Q psy15212 132 SGMYVLDACSAPGG---KTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 132 ~g~~VLDlcag~G~---kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
.|+.||=-|+|.|- .+.++|++ +++++..|++.+-.....+.+++.| .+.....|.++.. +++--. ++
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~r-g~~~vl~Din~~~~~etv~~~~~~g-~~~~y~cdis~~e--ei~~~a-----~~ 107 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKR-GAKLVLWDINKQGNEETVKEIRKIG-EAKAYTCDISDRE--EIYRLA-----KK 107 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHh-CCeEEEEeccccchHHHHHHHHhcC-ceeEEEecCCCHH--HHHHHH-----HH
Confidence 47899999999884 33444443 3599999999999999999999887 7788888988754 111000 00
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH--------HHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL--------SKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l--------~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
.. ..-+..|.++.+| |++..++- +..+.+.++.. -..-+.+|....+ ++.|++|-.
T Consensus 108 Vk-~e~G~V~ILVNNA-----GI~~~~~l--l~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~--~~~GHIV~I 171 (300)
T KOG1201|consen 108 VK-KEVGDVDILVNNA-----GIVTGKKL--LDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLE--NNNGHIVTI 171 (300)
T ss_pred HH-HhcCCceEEEecc-----ccccCCCc--cCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHh--cCCceEEEe
Confidence 00 0225788888776 44433321 23344444432 2223445555444 267888743
No 458
>PRK06125 short chain dehydrogenase; Provisional
Probab=82.93 E-value=15 Score=32.93 Aligned_cols=60 Identities=18% Similarity=0.190 Sum_probs=43.2
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHc-CCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRL-NLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~-g~~v~~~~~D~~~~~ 193 (329)
|.++|=.|+ +|+.+.++++.+ +.+|++++.++..++.+...+... +..+.++..|..+..
T Consensus 7 ~k~vlItG~-~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~ 70 (259)
T PRK06125 7 GKRVLITGA-SKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPE 70 (259)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHH
Confidence 567777774 566777776543 369999999998888877777654 445778888887643
No 459
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=82.87 E-value=7.3 Score=34.91 Aligned_cols=59 Identities=12% Similarity=0.066 Sum_probs=39.9
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.|.++|-.|+ +|+.+..+++.+ +.+|+.++.+. .+.+.+.++..+.++.++..|..+..
T Consensus 7 ~~k~~lItGa-s~gIG~aia~~l~~~G~~vv~~~~~~--~~~~~~~~~~~~~~~~~~~~Dl~~~~ 68 (251)
T PRK12481 7 NGKVAIITGC-NTGLGQGMAIGLAKAGADIVGVGVAE--APETQAQVEALGRKFHFITADLIQQK 68 (251)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEecCch--HHHHHHHHHHcCCeEEEEEeCCCCHH
Confidence 4677887775 567888877654 36888887653 24445555556666778889988754
No 460
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=82.78 E-value=3.7 Score=37.49 Aligned_cols=120 Identities=17% Similarity=0.188 Sum_probs=69.3
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---C---CEEEEEeCCh--------------------------hHHHHHHHHHHHcC
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---D---IKLISVDNNL--------------------------SRLNMISENLKRLN 179 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~---~~v~avD~~~--------------------------~rl~~l~~n~~~~g 179 (329)
|| .|+++|+--|+.+..++..+ + -+|++.|.-+ ..++..++|+.++|
T Consensus 75 pG-divE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 75 PG-DIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp -S-EEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred Ce-EEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 45 89999999999877665432 2 4788888522 13556667777777
Q ss_pred C---ceEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHH
Q psy15212 180 L---KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCK 256 (329)
Q Consensus 180 ~---~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~ 256 (329)
+ +++++.+.+.+.- +..+.+++-++-+|.- +.+--+.
T Consensus 154 l~~~~v~~vkG~F~dTL----------------p~~p~~~IAll~lD~D------------------------lYesT~~ 193 (248)
T PF05711_consen 154 LLDDNVRFVKGWFPDTL----------------PDAPIERIALLHLDCD------------------------LYESTKD 193 (248)
T ss_dssp TSSTTEEEEES-HHHHC----------------CC-TT--EEEEEE---------------------------SHHHHHH
T ss_pred CCcccEEEECCcchhhh----------------ccCCCccEEEEEEecc------------------------chHHHHH
Confidence 6 2788888765422 1112345555555532 1111345
Q ss_pred HHHHHHhcCCCCCEEEEEcCCCCccccHHHHHHHHhhC
Q psy15212 257 ILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH 294 (329)
Q Consensus 257 lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~~ 294 (329)
.|+..+..|.|||++++-.-.. +.. ...|..|.+++
T Consensus 194 aLe~lyprl~~GGiIi~DDY~~-~gc-r~AvdeF~~~~ 229 (248)
T PF05711_consen 194 ALEFLYPRLSPGGIIIFDDYGH-PGC-RKAVDEFRAEH 229 (248)
T ss_dssp HHHHHGGGEEEEEEEEESSTTT-HHH-HHHHHHHHHHT
T ss_pred HHHHHHhhcCCCeEEEEeCCCC-hHH-HHHHHHHHHHc
Confidence 7899999999999999765443 333 34567788777
No 461
>PRK05717 oxidoreductase; Validated
Probab=82.75 E-value=15 Score=32.68 Aligned_cols=57 Identities=16% Similarity=0.116 Sum_probs=39.2
Q ss_pred CCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
|.+||=.|+ +|+.+.++++.+. .+|+.+|.++.+...+.+ ..+..+.++.+|.++..
T Consensus 10 ~k~vlItG~-sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~---~~~~~~~~~~~Dl~~~~ 69 (255)
T PRK05717 10 GRVALVTGA-ARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAK---ALGENAWFIAMDVADEA 69 (255)
T ss_pred CCEEEEeCC-cchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH---HcCCceEEEEccCCCHH
Confidence 567886665 5778888877653 699999988776554433 33434678889988753
No 462
>PRK06197 short chain dehydrogenase; Provisional
Probab=82.74 E-value=27 Score=32.26 Aligned_cols=61 Identities=15% Similarity=0.123 Sum_probs=42.7
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHc--CCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRL--NLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~--g~~v~~~~~D~~~~~ 193 (329)
.|.+||=.| |+|+.+.++++.+. .+|+.++.+....+.+.+.+... +..+.++..|..+..
T Consensus 15 ~~k~vlItG-as~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~ 80 (306)
T PRK06197 15 SGRVAVVTG-ANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLA 80 (306)
T ss_pred CCCEEEEcC-CCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHH
Confidence 456777555 56788888886543 58999999888877666665543 234778888988754
No 463
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.70 E-value=11 Score=35.13 Aligned_cols=60 Identities=15% Similarity=0.080 Sum_probs=40.8
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCC-hhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNN-LSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~-~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
|.++|=.|++ |+.+.++++.+ +.+|+.+|.+ ...++.+.+.+...|..+.++..|+.+..
T Consensus 12 ~k~~lVTGas-~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~ 75 (306)
T PRK07792 12 GKVAVVTGAA-AGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRA 75 (306)
T ss_pred CCEEEEECCC-ChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHH
Confidence 5677755554 66777777654 3689988874 45566666666666666778888987743
No 464
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=82.60 E-value=10 Score=35.96 Aligned_cols=45 Identities=18% Similarity=0.242 Sum_probs=30.7
Q ss_pred CCCCeEEeecCCCchHHHH---HHHhCCC-EEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 131 RSGMYVLDACSAPGGKTCH---LLEIADI-KLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~---la~~~~~-~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
++|++||=.++ |+.+.. +|+.++. +|++++.++.+.+.++ ++|+.
T Consensus 176 ~~g~~vlI~g~--g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~----~~g~~ 224 (361)
T cd08231 176 GAGDTVVVQGA--GPLGLYAVAAAKLAGARRVIVIDGSPERLELAR----EFGAD 224 (361)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH----HcCCC
Confidence 47888887753 565544 5555665 8999999888876553 45654
No 465
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=82.25 E-value=33 Score=30.98 Aligned_cols=60 Identities=13% Similarity=0.124 Sum_probs=43.4
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+..+|=.|++ |+.+.+++..+ +..|+.++.+...++.+.+.+...+..+.++.+|..+..
T Consensus 10 ~k~vlVtGas-~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~ 72 (278)
T PRK08277 10 GKVAVITGGG-GVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKE 72 (278)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHH
Confidence 5567766654 56777776654 369999999988888777777766666778889987643
No 466
>PRK08628 short chain dehydrogenase; Provisional
Probab=81.71 E-value=19 Score=32.04 Aligned_cols=59 Identities=12% Similarity=0.095 Sum_probs=41.0
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
|..+|=.|+ +|+.+.++++.+ +..|+.++.++... .+.+.+...+.++.++..|..+..
T Consensus 7 ~~~ilItGa-sggiG~~la~~l~~~G~~v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~ 68 (258)
T PRK08628 7 DKVVIVTGG-ASGIGAAISLRLAEEGAIPVIFGRSAPDD-EFAEELRALQPRAEFVQVDLTDDA 68 (258)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHcCCcEEEEcCChhhH-HHHHHHHhcCCceEEEEccCCCHH
Confidence 557776665 577888887654 25888888888776 444555555666788889988754
No 467
>PRK06114 short chain dehydrogenase; Provisional
Probab=81.68 E-value=16 Score=32.64 Aligned_cols=60 Identities=15% Similarity=0.103 Sum_probs=42.1
Q ss_pred CCeEEeecCCCchHHHHHHHhCC---CEEEEEeCCh-hHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNL-SRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~-~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
|..+|=.| |+|+.+.++++.+. .+|+.++.+. ..++.+.+.++..+..+..+..|..+..
T Consensus 8 ~k~~lVtG-~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~ 71 (254)
T PRK06114 8 GQVAFVTG-AGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKA 71 (254)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHH
Confidence 55777665 56678888887543 5899999865 4566666667666656777888987653
No 468
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=81.34 E-value=21 Score=33.00 Aligned_cols=62 Identities=19% Similarity=0.262 Sum_probs=48.4
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHH-cCCceEEEecCccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKR-LNLKATLILSDISKIN 193 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~-~g~~v~~~~~D~~~~~ 193 (329)
..+.++|=-||.. |++..+|+.+. ..++-+-.+.+++..+.+.++. .|+.+.++..|..+..
T Consensus 4 ~~~~~~lITGASs-GIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~ 69 (265)
T COG0300 4 MKGKTALITGASS-GIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPE 69 (265)
T ss_pred CCCcEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChh
Confidence 3466777777655 57777776543 5999999999999999999886 4677999999988764
No 469
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=81.33 E-value=12 Score=35.78 Aligned_cols=19 Identities=11% Similarity=0.169 Sum_probs=14.8
Q ss_pred CeEEeecCCCchHHHHHHH
Q psy15212 134 MYVLDACSAPGGKTCHLLE 152 (329)
Q Consensus 134 ~~VLDlcag~G~kt~~la~ 152 (329)
-+|.|+||+.|..|+.+..
T Consensus 18 ~~iaD~GcS~G~Nsl~~~~ 36 (334)
T PF03492_consen 18 FRIADLGCSSGPNSLLAVS 36 (334)
T ss_dssp EEEEEES--SSHHHHHHHH
T ss_pred eEEEecCCCCCccHHHHHH
Confidence 4799999999999988765
No 470
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=81.29 E-value=25 Score=31.05 Aligned_cols=60 Identities=12% Similarity=0.109 Sum_probs=40.7
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEe-CChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVD-NNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD-~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+.++|-.|+ +|+.+.++++.+ +..|+.+. .++...+...+.++..+.++.++..|..+..
T Consensus 6 ~~~~lItG~-s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~ 69 (247)
T PRK12935 6 GKVAIVTGG-AKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSKVE 69 (247)
T ss_pred CCEEEEECC-CCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECCCCCHH
Confidence 568888884 688888888754 35776654 3555665555555555656788889988754
No 471
>PRK05993 short chain dehydrogenase; Provisional
Probab=81.27 E-value=12 Score=34.14 Aligned_cols=53 Identities=6% Similarity=-0.022 Sum_probs=37.4
Q ss_pred CCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCcccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKI 192 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~ 192 (329)
+..||=.|| +|+.+.++++.+. .+|++++.++..++.+.. .+ ++++..|..+.
T Consensus 4 ~k~vlItGa-sggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~----~~--~~~~~~Dl~d~ 59 (277)
T PRK05993 4 KRSILITGC-SSGIGAYCARALQSDGWRVFATCRKEEDVAALEA----EG--LEAFQLDYAEP 59 (277)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----CC--ceEEEccCCCH
Confidence 556776665 6788888876543 699999999887765543 23 56677888764
No 472
>PRK08263 short chain dehydrogenase; Provisional
Probab=81.20 E-value=16 Score=33.07 Aligned_cols=57 Identities=12% Similarity=0.071 Sum_probs=38.7
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+..||=.| |+|+.+.++++.+ +.+|++++.++..++.+.+.. +-.+.++..|+.+..
T Consensus 3 ~k~vlItG-asg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~ 62 (275)
T PRK08263 3 EKVWFITG-ASRGFGRAWTEAALERGDRVVATARDTATLADLAEKY---GDRLLPLALDVTDRA 62 (275)
T ss_pred CCEEEEeC-CCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc---cCCeeEEEccCCCHH
Confidence 34677776 4678888887654 258999999888776554432 223667788887643
No 473
>PLN02780 ketoreductase/ oxidoreductase
Probab=80.99 E-value=33 Score=32.25 Aligned_cols=58 Identities=17% Similarity=0.238 Sum_probs=41.7
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHc--CCceEEEecCcc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRL--NLKATLILSDIS 190 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~--g~~v~~~~~D~~ 190 (329)
.|..+|=.|| +||.+.++|..+ |.+|+.++.++++++.+.+.++.. +..+..+..|..
T Consensus 52 ~g~~~lITGA-s~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~ 114 (320)
T PLN02780 52 YGSWALVTGP-TDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFS 114 (320)
T ss_pred cCCEEEEeCC-CcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECC
Confidence 3677887775 556777777654 358999999999999888777653 234666677765
No 474
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=80.59 E-value=14 Score=34.81 Aligned_cols=46 Identities=20% Similarity=0.130 Sum_probs=31.0
Q ss_pred hcCCCCCCeEEeecCC-CchHHHHHHHhCCC-EEEEEeCChhHHHHHH
Q psy15212 127 LLDIRSGMYVLDACSA-PGGKTCHLLEIADI-KLISVDNNLSRLNMIS 172 (329)
Q Consensus 127 ~l~~~~g~~VLDlcag-~G~kt~~la~~~~~-~v~avD~~~~rl~~l~ 172 (329)
...+++|++||=.++| .|..+.++|+..+. .|++++.++++.+.++
T Consensus 167 ~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~ 214 (351)
T cd08233 167 RSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAE 214 (351)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 3456788888777542 23334455666665 8999999999887664
No 475
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.40 E-value=25 Score=31.31 Aligned_cols=60 Identities=10% Similarity=0.080 Sum_probs=40.8
Q ss_pred CCeEEeecCCC-chHHHHHHHhCC---CEEEEEeCC------------hhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAP-GGKTCHLLEIAD---IKLISVDNN------------LSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~-G~kt~~la~~~~---~~v~avD~~------------~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+..||=.|++. |+.+.++++.+. ..|+.++.+ ..... +...+...+..+.++..|..+..
T Consensus 5 ~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~~~~ 80 (256)
T PRK12748 5 KKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVL-LKEEIESYGVRCEHMEIDLSQPY 80 (256)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHH-HHHHHHhcCCeEEEEECCCCCHH
Confidence 56788888875 788888876543 588888876 22222 44445555656788889987743
No 476
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=80.37 E-value=14 Score=33.70 Aligned_cols=49 Identities=12% Similarity=0.158 Sum_probs=34.8
Q ss_pred CCCCCCeEEeecC--CCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 129 DIRSGMYVLDACS--APGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 129 ~~~~g~~VLDlca--g~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
..++|+.||=.++ +-|..+.++|+..+.+|+++..++.+.+.+. .+|+.
T Consensus 139 ~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~----~~g~~ 189 (320)
T cd08243 139 GLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALLK----ELGAD 189 (320)
T ss_pred CCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH----hcCCc
Confidence 3677888887765 4566667777777788999998887765553 35653
No 477
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=80.34 E-value=18 Score=32.32 Aligned_cols=57 Identities=12% Similarity=0.086 Sum_probs=37.4
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCcccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKI 192 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~ 192 (329)
|..+|=.|+ +|+.+.++++.+ +.+|+++|.+.. ..+.+.+...+..+..+..|..+.
T Consensus 10 ~k~~lItG~-~~gIG~a~a~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~ 69 (253)
T PRK08993 10 GKVAVVTGC-DTGLGQGMALGLAEAGCDIVGINIVEP--TETIEQVTALGRRFLSLTADLRKI 69 (253)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEecCcch--HHHHHHHHhcCCeEEEEECCCCCH
Confidence 556776664 677888888754 368888887543 333444555555577788888764
No 478
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=79.95 E-value=11 Score=33.90 Aligned_cols=62 Identities=11% Similarity=-0.026 Sum_probs=37.4
Q ss_pred CCCeEEeecCC-CchHHHHHHHhCC---CEEEEEeCChh--HHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSA-PGGKTCHLLEIAD---IKLISVDNNLS--RLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag-~G~kt~~la~~~~---~~v~avD~~~~--rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.|..+|=.|++ +++.+..+|+.+. .+|+.++.+.. +.+...+.+...+-.+.++..|..+..
T Consensus 5 ~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~ 72 (258)
T PRK07370 5 TGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDA 72 (258)
T ss_pred CCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHH
Confidence 36788889985 6889988887643 57766654432 333222233333323557778887754
No 479
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=79.93 E-value=4.4 Score=31.86 Aligned_cols=55 Identities=15% Similarity=0.096 Sum_probs=35.7
Q ss_pred eEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccccccCC
Q psy15212 135 YVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKN 214 (329)
Q Consensus 135 ~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (329)
+|| +|||.|.-|..+++ .+++.++..|+++++...+..+.. .....
T Consensus 3 kIL-lvCg~G~STSlla~-----------------k~k~~~~e~gi~~~i~a~~~~e~~----------------~~~~~ 48 (104)
T PRK09590 3 KAL-IICAAGMSSSMMAK-----------------KTTEYLKEQGKDIEVDAITATEGE----------------KAIAA 48 (104)
T ss_pred EEE-EECCCchHHHHHHH-----------------HHHHHHHHCCCceEEEEecHHHHH----------------Hhhcc
Confidence 455 78999987665554 346667788888777776665543 11123
Q ss_pred CCCCEEEEc
Q psy15212 215 KYFDRILAD 223 (329)
Q Consensus 215 ~~fD~Vl~D 223 (329)
..||+|++-
T Consensus 49 ~~~DvIll~ 57 (104)
T PRK09590 49 AEYDLYLVS 57 (104)
T ss_pred CCCCEEEEC
Confidence 469999863
No 480
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=79.75 E-value=22 Score=33.60 Aligned_cols=79 Identities=9% Similarity=-0.027 Sum_probs=49.2
Q ss_pred CCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
+.+||=.|+ +|..+.++++.+- .+|++++.+......+...+.. +..++++.+|..+... +.
T Consensus 10 ~~~vLVtG~-~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~--~~----------- 74 (353)
T PLN02896 10 TGTYCVTGA-TGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKE-GDRLRLFRADLQEEGS--FD----------- 74 (353)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhcc-CCeEEEEECCCCCHHH--HH-----------
Confidence 568887764 7899999887653 5899988876654444333322 2237788889876430 00
Q ss_pred cccCCCCCCEEEEccCCcc
Q psy15212 210 RFYKNKYFDRILADLPCTG 228 (329)
Q Consensus 210 ~~~~~~~fD~Vl~D~PCsg 228 (329)
... ..+|.|+--+..++
T Consensus 75 ~~~--~~~d~Vih~A~~~~ 91 (353)
T PLN02896 75 EAV--KGCDGVFHVAASME 91 (353)
T ss_pred HHH--cCCCEEEECCcccc
Confidence 011 24799987775543
No 481
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=79.48 E-value=45 Score=29.72 Aligned_cols=57 Identities=18% Similarity=0.207 Sum_probs=41.0
Q ss_pred eEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 135 YVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 135 ~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+||=.|++ |+.+..+++.+ +.+|+.++.++..++.+.+.++..+ .+.++..|..+..
T Consensus 2 ~vlItGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~Dv~d~~ 61 (259)
T PRK08340 2 NVLVTASS-RGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYG-EVYAVKADLSDKD 61 (259)
T ss_pred eEEEEcCC-cHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC-CceEEEcCCCCHH
Confidence 46666654 66777777654 3689999999988888777776544 4677888987643
No 482
>PRK08226 short chain dehydrogenase; Provisional
Probab=79.27 E-value=27 Score=31.11 Aligned_cols=60 Identities=15% Similarity=0.153 Sum_probs=39.3
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.+.++|=.|+ +|+.+.++++.+ +.+|+.++.+....+ ....+...+..+.++.+|+.+..
T Consensus 5 ~~~~~lItG~-s~giG~~la~~l~~~G~~Vv~~~r~~~~~~-~~~~~~~~~~~~~~~~~Dl~~~~ 67 (263)
T PRK08226 5 TGKTALITGA-LQGIGEGIARVFARHGANLILLDISPEIEK-LADELCGRGHRCTAVVADVRDPA 67 (263)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHCCCEEEEecCCHHHHH-HHHHHHHhCCceEEEECCCCCHH
Confidence 3567776665 577888877654 368999998875333 33334444555778889988743
No 483
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=79.26 E-value=22 Score=31.61 Aligned_cols=60 Identities=8% Similarity=-0.056 Sum_probs=41.6
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHc-C-CceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRL-N-LKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~-g-~~v~~~~~D~~~~~ 193 (329)
+..||=.|+ +|+.+.+++..+ +..|+.+|.+...++.+...+... + ..+.++..|..+..
T Consensus 2 ~k~ilItG~-~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 66 (259)
T PRK12384 2 NQVAVVIGG-GQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQ 66 (259)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHH
Confidence 346777775 577777777554 369999999988877766655432 3 34778888987643
No 484
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=79.23 E-value=14 Score=34.02 Aligned_cols=45 Identities=16% Similarity=0.303 Sum_probs=31.2
Q ss_pred cCCCCCCeEEeecC--CCchHHHHHHHhCCCEEEEEeCChhHHHHHH
Q psy15212 128 LDIRSGMYVLDACS--APGGKTCHLLEIADIKLISVDNNLSRLNMIS 172 (329)
Q Consensus 128 l~~~~g~~VLDlca--g~G~kt~~la~~~~~~v~avD~~~~rl~~l~ 172 (329)
..+++|+.||=.++ +-|..+.++|+.++..++++.-+.+..+.++
T Consensus 135 ~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~~ 181 (324)
T cd08292 135 LGVKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAELR 181 (324)
T ss_pred hCCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHHH
Confidence 45778999887764 3566677777777777777766666655543
No 485
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=79.13 E-value=14 Score=34.30 Aligned_cols=46 Identities=17% Similarity=0.289 Sum_probs=30.3
Q ss_pred CCCeEEee---cCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 132 SGMYVLDA---CSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 132 ~g~~VLDl---cag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
+++.+|=. +.+.|..+.++|+.++.+|++++.++.+.+.+++ +|..
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~~----~g~~ 190 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDLLKK----IGAE 190 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCc
Confidence 34444433 2344455566777777899999999988877754 5654
No 486
>PRK05875 short chain dehydrogenase; Provisional
Probab=79.10 E-value=21 Score=32.22 Aligned_cols=60 Identities=13% Similarity=0.085 Sum_probs=42.6
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcC--CceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLN--LKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g--~~v~~~~~D~~~~~ 193 (329)
+.++|=.|+ +|+.+.++++.+ +.+|++++.++...+...+.+...+ ..+.++..|..+..
T Consensus 7 ~k~vlItGa-sg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~ 71 (276)
T PRK05875 7 DRTYLVTGG-GSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDED 71 (276)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHH
Confidence 568887775 467888887654 3589999998887776666665442 24677888987643
No 487
>PRK07041 short chain dehydrogenase; Provisional
Probab=78.76 E-value=19 Score=31.45 Aligned_cols=52 Identities=13% Similarity=0.078 Sum_probs=37.1
Q ss_pred CCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 141 SAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 141 ag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
-|+|+.+.++++.+ +..|++++.++..++.+...++ .+..++++..|..+..
T Consensus 4 Gas~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~ 58 (230)
T PRK07041 4 GGSSGIGLALARAFAAEGARVTIASRSRDRLAAAARALG-GGAPVRTAALDITDEA 58 (230)
T ss_pred cCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh-cCCceEEEEccCCCHH
Confidence 35677787777654 3699999999888777666554 2445778888987754
No 488
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=78.48 E-value=19 Score=32.56 Aligned_cols=133 Identities=8% Similarity=-0.012 Sum_probs=64.6
Q ss_pred CCCeEEeecC-CCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccc
Q psy15212 132 SGMYVLDACS-APGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 132 ~g~~VLDlca-g~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
.|..+|=.|+ |+++.+..+|+.+. .+|+.++......+.+++..++.+- ...+..|+.+... +.--.+. ..
T Consensus 5 ~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Dv~d~~~--v~~~~~~-~~- 79 (260)
T PRK06997 5 AGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGS-DLVFPCDVASDEQ--IDALFAS-LG- 79 (260)
T ss_pred CCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHhcCC-cceeeccCCCHHH--HHHHHHH-HH-
Confidence 3678888887 57888888876543 5787776542222333333333332 2356778876541 1000000 00
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHH----HHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLS----KYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~----~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
. ..+.+|.++.++-......+. .+. ....+.++..... .-...+.+.++..++.+|.++..+
T Consensus 80 --~--~~g~iD~lvnnAG~~~~~~~~-~~~-~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~~g~Ii~is 145 (260)
T PRK06997 80 --Q--HWDGLDGLVHSIGFAPREAIA-GDF-LDGLSRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLS 145 (260)
T ss_pred --H--HhCCCcEEEEccccCCccccc-ccc-chhcCHHHHHHHHHhhhHHHHHHHHHHHHhcCCCceEEEEe
Confidence 0 125799999877322110000 000 0011222322221 122345667777777778777654
No 489
>PRK05599 hypothetical protein; Provisional
Probab=78.34 E-value=26 Score=31.25 Aligned_cols=58 Identities=5% Similarity=0.066 Sum_probs=42.2
Q ss_pred eEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccc
Q psy15212 135 YVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKIN 193 (329)
Q Consensus 135 ~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~ 193 (329)
.+|=.|+ ++|.+..+++.+. .+|+.++.++.+++.+.+.++..|-. +.++..|+.+..
T Consensus 2 ~vlItGa-s~GIG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~ 62 (246)
T PRK05599 2 SILILGG-TSDIAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLD 62 (246)
T ss_pred eEEEEeC-ccHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHH
Confidence 3555555 4567777776443 68999999999999888888776654 678888988754
No 490
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=78.21 E-value=12 Score=35.09 Aligned_cols=43 Identities=28% Similarity=0.244 Sum_probs=29.0
Q ss_pred CCCCCeEEeecCCC-chHHHHHHHhCCC-EEEEEeCChhHHHHHH
Q psy15212 130 IRSGMYVLDACSAP-GGKTCHLLEIADI-KLISVDNNLSRLNMIS 172 (329)
Q Consensus 130 ~~~g~~VLDlcag~-G~kt~~la~~~~~-~v~avD~~~~rl~~l~ 172 (329)
.++|+.||-.++|. |..+.++|+..+. +|++++.++++...++
T Consensus 161 ~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~ 205 (341)
T cd05281 161 DVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAK 205 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH
Confidence 46788888765432 4455667777775 7888887887776544
No 491
>PLN02702 L-idonate 5-dehydrogenase
Probab=78.20 E-value=19 Score=34.09 Aligned_cols=50 Identities=22% Similarity=0.168 Sum_probs=33.0
Q ss_pred cCCCCCCeEEeecCC-CchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 128 LDIRSGMYVLDACSA-PGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 128 l~~~~g~~VLDlcag-~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
..+.+|+.||=.|+| -|..+.++|+..+ ..|+++|.++.+.+.+ +.+|+.
T Consensus 177 ~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~----~~~g~~ 228 (364)
T PLN02702 177 ANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVA----KQLGAD 228 (364)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH----HHhCCC
Confidence 456788888888542 2344566666666 4689999988777644 345665
No 492
>KOG2352|consensus
Probab=77.79 E-value=8.5 Score=38.33 Aligned_cols=135 Identities=13% Similarity=0.101 Sum_probs=82.4
Q ss_pred CCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhccccccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
+.++|=+|=|.|+....+-...+ ..++|+++++.+++.+.+++....-. ..+...|...+. .++. +.
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~-~~~~----k~------ 364 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFL-QRTA----KS------ 364 (482)
T ss_pred cCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHH-HHHh----hc------
Confidence 45677788888888877765556 89999999999999999987655433 455556665542 1110 00
Q ss_pred ccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHHHH
Q psy15212 211 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIF 290 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~~ 290 (329)
--.+..||++++|.--+-++-+.--|. .. +-..+|..+-..|.|-|.++.--.+-...-+.++...+
T Consensus 365 ~~~~~~~dvl~~dvds~d~~g~~~pp~-------~f------va~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~~~~~l 431 (482)
T KOG2352|consen 365 QQEDICPDVLMVDVDSKDSHGMQCPPP-------AF------VAQVALQPVKMILPPRGMFIINLVTRNSSFKDEVLMNL 431 (482)
T ss_pred cccccCCcEEEEECCCCCcccCcCCch-------HH------HHHHHHHHHhhccCccceEEEEEecCCcchhHHHHHhh
Confidence 013468999999975332211111111 11 12346777778899999776543333444555655554
Q ss_pred H
Q psy15212 291 S 291 (329)
Q Consensus 291 l 291 (329)
-
T Consensus 432 ~ 432 (482)
T KOG2352|consen 432 A 432 (482)
T ss_pred h
Confidence 3
No 493
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=77.65 E-value=2.9 Score=41.71 Aligned_cols=18 Identities=28% Similarity=0.468 Sum_probs=16.6
Q ss_pred eEEeecCCCchHHHHHHH
Q psy15212 135 YVLDACSAPGGKTCHLLE 152 (329)
Q Consensus 135 ~VLDlcag~G~kt~~la~ 152 (329)
.|+||-||.||++.+|.+
T Consensus 368 NVMDMnAg~GGFAAAL~~ 385 (506)
T PF03141_consen 368 NVMDMNAGYGGFAAALID 385 (506)
T ss_pred eeeeecccccHHHHHhcc
Confidence 599999999999998875
No 494
>PRK10083 putative oxidoreductase; Provisional
Probab=77.55 E-value=22 Score=33.10 Aligned_cols=49 Identities=14% Similarity=-0.009 Sum_probs=32.7
Q ss_pred hcCCCCCCeEEeecCCCchHHHH---HHHh-CC-CEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 127 LLDIRSGMYVLDACSAPGGKTCH---LLEI-AD-IKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 127 ~l~~~~g~~VLDlcag~G~kt~~---la~~-~~-~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
...+++|++||=.|+ |+.+.. +|+. ++ ..++++|.++++.+.++ .+|+.
T Consensus 155 ~~~~~~g~~vlI~g~--g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~----~~Ga~ 208 (339)
T PRK10083 155 RTGPTEQDVALIYGA--GPVGLTIVQVLKGVYNVKAVIVADRIDERLALAK----ESGAD 208 (339)
T ss_pred hcCCCCCCEEEEECC--CHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHH----HhCCc
Confidence 345788999888774 454444 4553 46 36889999998877654 45653
No 495
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=77.44 E-value=12 Score=35.09 Aligned_cols=48 Identities=17% Similarity=0.212 Sum_probs=31.1
Q ss_pred CCCCCCeEEeecC--CCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 129 DIRSGMYVLDACS--APGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 129 ~~~~g~~VLDlca--g~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
.+++|++||=.|+ +-|..+.++|+..+.++++++.+. +.+. ++.+|+.
T Consensus 174 ~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~----~~~~g~~ 223 (350)
T cd08274 174 GVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEA----VRALGAD 223 (350)
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHH----HHhcCCe
Confidence 4678899888876 344455666776777888887543 4433 3446653
No 496
>KOG0821|consensus
Probab=77.38 E-value=5.1 Score=35.96 Aligned_cols=63 Identities=17% Similarity=0.240 Sum_probs=50.1
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
-..+-|..+|-||||+|-.+....-.++..++++..-+..++...+.......+.+.|+..+.
T Consensus 49 ~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~~~~~IHh~D~LR~~ 111 (326)
T KOG0821|consen 49 LTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAPGKLRIHHGDVLRFK 111 (326)
T ss_pred cccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCCcceEEeccccceeh
Confidence 346789999999999999998754368889999998888887777755445678888887765
No 497
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=76.88 E-value=30 Score=32.24 Aligned_cols=61 Identities=15% Similarity=0.098 Sum_probs=42.4
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.+.+||=.|+ +|+.+.++++.+ +.+|+.++.+..+.+.+.+.+...+..+.++..|..+..
T Consensus 5 ~~k~vlVTGa-s~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~ 68 (322)
T PRK07453 5 AKGTVIITGA-SSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLD 68 (322)
T ss_pred CCCEEEEEcC-CChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHH
Confidence 3556776664 577888887654 268999999988877766665433334778888987754
No 498
>PRK06057 short chain dehydrogenase; Provisional
Probab=76.82 E-value=40 Score=29.98 Aligned_cols=56 Identities=7% Similarity=0.073 Sum_probs=38.0
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.|.+||-.|+ +|+.+.++++.+. .+|++++.+...++.+.+.+ + ..++..|..+..
T Consensus 6 ~~~~vlItGa-sggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~---~--~~~~~~D~~~~~ 64 (255)
T PRK06057 6 AGRVAVITGG-GSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEV---G--GLFVPTDVTDED 64 (255)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHc---C--CcEEEeeCCCHH
Confidence 4678888877 4678888876553 69999999887766544433 2 245667776643
No 499
>PRK06484 short chain dehydrogenase; Validated
Probab=76.79 E-value=22 Score=35.56 Aligned_cols=126 Identities=11% Similarity=0.125 Sum_probs=68.3
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccch-hhhhhhhcccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINL-KKLYIDINKKTNN 207 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~-~~~~~~~~~~~~~ 207 (329)
.|..+|=.|+ +|+++.++++.+. .+|+.++.++..++.+.+.+ +.++..+..|..+... ..+. + . ..
T Consensus 268 ~~k~~lItGa-s~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~-~--~-~~- 338 (520)
T PRK06484 268 SPRVVAITGG-ARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEAL---GDEHLSVQADITDEAAVESAF-A--Q-IQ- 338 (520)
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---CCceeEEEccCCCHHHHHHHH-H--H-HH-
Confidence 4566776655 5667888776543 69999999988777665433 4445667788876531 0000 0 0 00
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH----HHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL----SKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l----~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
. ..+.+|.++.++-..... .+ .+..+.++.... ..-...+++.+...++.+|++|+.+.
T Consensus 339 --~--~~g~id~li~nAg~~~~~----~~--~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS 401 (520)
T PRK06484 339 --A--RWGRLDVLVNNAGIAEVF----KP--SLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGS 401 (520)
T ss_pred --H--HcCCCCEEEECCCCcCCC----CC--hhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECc
Confidence 0 114689999876332110 01 111222332222 11223456666666677888887654
No 500
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=76.56 E-value=36 Score=33.26 Aligned_cols=34 Identities=15% Similarity=0.178 Sum_probs=23.6
Q ss_pred HHHHhcCCCCCEEEEEcCCCCccccHHHHHHHHhh
Q psy15212 259 NNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKN 293 (329)
Q Consensus 259 ~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~ 293 (329)
+...+.+++|-.++. +.|+.|...+++...++++
T Consensus 104 ~~i~~~l~~g~lvi~-~STv~pgt~~~l~~~~~~~ 137 (411)
T TIGR03026 104 ETIAKHLRKGATVVL-ESTVPPGTTEEVVKPILER 137 (411)
T ss_pred HHHHHhcCCCCEEEE-eCcCCCCchHHHHHHHHHh
Confidence 344455777665554 4578888888888888776
Done!