RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15212
(329 letters)
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet,
methyltransferase-fold, RNA-binding domain; 1.65A
{Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Length = 429
Score = 338 bits (870), Expect = e-115
Identities = 112/336 (33%), Positives = 194/336 (57%), Gaps = 32/336 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAEFNAS--DARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LRIN+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L +KAT+ D + ++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 293 LGMKATVKQGDGRYPS----------------QWCGEQQFDRILLDAPCSATGVIRRHPD 336
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F + D+
Sbjct: 337 IKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTADA 396
Query: 298 IRLNSPG------QLLPTVNKKQDYDGFFYSLFQKR 327
+ Q LP ++ DGFFY+ K+
Sbjct: 397 ELCETGTPEQPGKQNLPG---AEEGDGFFYAKLIKK 429
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog,
methyltransferase, structural genomics, NPPSFA; HET:
SFG; 2.55A {Pyrococcus horikoshii}
Length = 450
Score = 289 bits (743), Expect = 9e-96
Identities = 85/343 (24%), Positives = 155/343 (45%), Gaps = 34/343 (9%)
Query: 2 INAILREFLRKKGEIFKSKMYNIHESYWNY--PIWWINQVKITYPNFFQW-KNILDVGHK 58
+ + L K E + + E W Y P W I +VK + + V +
Sbjct: 126 VGMYFWDLLDKIFEYKPNPKNELEELEWKYLAPSWLIERVKGILGD--ETEDFFRSVNKR 183
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSI 116
+++R+N K + L++ G+E P +K+ P + F G +
Sbjct: 184 HEWISIRVNTLKANVEEVIGELEEDGVEVVRSERVPTILKIKGPYNFDTSSAFNEGKIIV 243
Query: 117 QDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIK--LISVDNNLSRLNMISEN 174
Q+ A+ +A+ +LD + G V+D +APGGKT HL E+ K + + D + R+ + +
Sbjct: 244 QEEASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDF 303
Query: 175 LKRLNLK-ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVR 233
+KR+ +K ++ D K + D++L D PCT SG +
Sbjct: 304 VKRMGIKIVKPLVKDARKAP----------------EIIGEEVADKVLLDAPCTSSGTIG 347
Query: 234 RNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKN 293
+NP++ W R++ I ++S+ ++L + +++KPGG+LL+ TCS++ EE+E+ F
Sbjct: 348 KNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFLNV 407
Query: 294 HKDSIRLNSPGQLLPTVNK--------KQDYDGFFYSLFQKRK 328
H + + P + + GFFY+L +K K
Sbjct: 408 HPEFKLVPLKSPYDPGFLEGTMRAWPHRHSTIGFFYALLEKSK 450
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii}
SCOP: c.66.1.38
Length = 315
Score = 198 bits (506), Expect = 9e-62
Identities = 81/325 (24%), Positives = 127/325 (39%), Gaps = 49/325 (15%)
Query: 28 YWNYPIW----WINQVKITYPNFFQWKNILDVGHKKPPLTLRINQRKTTLISYNKLLKKS 83
Y + + K P R+N K ++ K L K
Sbjct: 13 RLGYSKLFADRYFQLWGERAIRIAEAME------KPLPRCFRVNTLKISVQDLVKRLNKK 66
Query: 84 GLETTII--GPLAIKL-HTPISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDAC 140
G + + L P SI+ P+F G IQ+A++ LD + G V D
Sbjct: 67 GFQFKRVPWAKEGFCLTREPFSITSTPEFLTGLIYIQEASSMYPPVALDPKPGEIVADMA 126
Query: 141 SAPGGKTCHLLEIADIK--LISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLY 198
+APGGKT +L ++ + + D + +RL NL RL + ++ S ++ +L
Sbjct: 127 AAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSL-HIGEL- 184
Query: 199 IDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKIL 258
N FD+IL D PCTGSG + +NP+ W R +DIK ++L
Sbjct: 185 ---------------NVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLL 229
Query: 259 NNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK---DSIRLNSPG-------QLLP 308
++LKPGG L++ TCSL EE+E N ++ P +L
Sbjct: 230 EKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDVELLPLKYGEPALTNPFGIELSE 289
Query: 309 TVNK-------KQDYDGFFYSLFQK 326
+ + GFF + +K
Sbjct: 290 EIKNARRLYPDVHETSGFFIAKIRK 314
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase,
structural genomics, structural genomics consortium,
SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Length = 309
Score = 195 bits (497), Expect = 2e-60
Identities = 63/309 (20%), Positives = 108/309 (34%), Gaps = 54/309 (17%)
Query: 60 PPLTLRINQRKTTLISYNKLLKKSGLETTIIG--------------------PLAIKLHT 99
P +R+N KT K+ G P +
Sbjct: 10 LPRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPA 69
Query: 100 PISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IK 157
+ + P + G +QD A+ L A LLD G +V+DAC+APG KT HL + K
Sbjct: 70 QTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGK 129
Query: 158 LISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYF 217
+ + D + RL ++ L R + + D + Y
Sbjct: 130 IFAFDLDAKRLASMATLLARAGVS-----------CCELAEED-FLAVSPSDPRYHE--V 175
Query: 218 DRILADLPCTGSGVVRRNPDIPWLRRKNDIK--KLSKYSCKILNNLWKMLKPGGKLLFVT 275
IL D C+GSG+ R + P + ++ L+ + + L + +L++ T
Sbjct: 176 HYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALT-FPSLQRLVYST 234
Query: 276 CSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVN---------------KKQDYDGFF 320
CSL EE+E+ + + + RL P + GFF
Sbjct: 235 CSLCQEENEDVVRDALQQNPGAFRLAPALPAWPHRGLSTFPGAEHCLRASPETTLSSGFF 294
Query: 321 YSLFQKRKE 329
++ ++ +
Sbjct: 295 VAVIERVEV 303
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold,
structural genomics, riken structu genomics/proteomics
initiative; 1.27A {Methanocaldococcus jannaschii} PDB:
3a4t_A
Length = 274
Score = 193 bits (493), Expect = 2e-60
Identities = 69/291 (23%), Positives = 131/291 (45%), Gaps = 34/291 (11%)
Query: 52 ILDVGHKKPPLTLRINQRKTTLISYNKLLKKSG--LETTIIGPLAIKLHTPISISKIPKF 109
++ V + +R+N K K L+ G LE T + +P SI P++
Sbjct: 1 MMIVYKGEKMQFIRVNTLKINPEVLKKRLENKGVVLEKTFLDYAFEVKKSPFSIGSTPEY 60
Query: 110 FNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIK--LISVDNNLSR 167
G+ Q ++ + +L+ R ++LD C+APGGKT HL ++ K +++V+ + +R
Sbjct: 61 LFGYYMPQSISSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTR 120
Query: 168 LNMISENLKRLNLKATLILS-DISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPC 226
+ N+ R+ + T+I++ D+ K + +FD+IL D PC
Sbjct: 121 TKALKSNINRMGVLNTIIINADMRKY--------------KDYLLKNEIFFDKILLDAPC 166
Query: 227 TGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQ 286
+G+ + +N ++ + DIK S ++++ +LK G+L++ TCS+ EE+EE
Sbjct: 167 SGNIIKDKNRNV----SEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEV 222
Query: 287 AIIFSKNHKDSIRLNSPGQLLPTVNKKQDY-----------DGFFYSLFQK 326
+ D + +N K+ Y + FF + +K
Sbjct: 223 IKYILQKRNDVELIIIKANEFKGINIKEGYIKGTLRVFPPNEPFFIAKLRK 273
>2frx_A Hypothetical protein YEBU; rossmann-type
S-adenosylmethionine-dependent methyltransfera domain;
2.90A {Escherichia coli}
Length = 479
Score = 193 bits (493), Expect = 4e-58
Identities = 67/331 (20%), Positives = 139/331 (41%), Gaps = 46/331 (13%)
Query: 25 HESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPPLTLRINQRKTTLISYNKLLKKSG 84
+ + +P ++ Q++ P+ + + L + ++R+N K ++ + +L G
Sbjct: 3 QHTVY-FPDAFLTQMREAMPSTLSFDDFLAACQRPLRRSIRVNTLKISVADFLQLTAPYG 61
Query: 85 LETTIIG--PLAIKL----HTPISISKIPKFFNGFCSIQDAAAQLAAPLL--DIRSGMYV 136
T I + + + + +G IQ+A++ L L D + V
Sbjct: 62 WTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRV 121
Query: 137 LDACSAPGGKTCHLLEIADIK--LISVDNNLSRLNMISENLKRLNLKATLILSDISKINL 194
+D +APG KT + + + +++ + + SR+ ++ N+ R + +
Sbjct: 122 MDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVAL--------- 172
Query: 195 KKLYIDINKKTNN---RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLS 251
T+ F + FD IL D PC+G GVVR++PD ++++
Sbjct: 173 ----------THFDGRVFGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIA 222
Query: 252 KYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVN 311
+++++ + L+PGG L++ TC+L EE+E + + + D++ G L P N
Sbjct: 223 ATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFPGAN 282
Query: 312 K-------------KQDYDGFFYSLFQKRKE 329
K D +GFF + +K +
Sbjct: 283 KALTEEGFLHVFPQIYDCEGFFVARLRKTQA 313
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif,
transferase; 2.28A {Enterococcus faecium}
Length = 456
Score = 179 bits (455), Expect = 7e-53
Identities = 64/326 (19%), Positives = 115/326 (35%), Gaps = 53/326 (16%)
Query: 30 NYPIW----WINQVKITYPNFFQWKNILDVGHKKPPLTLRINQRKTTLISYNKLLKKSGL 85
P + + +FF + R N K + + L
Sbjct: 7 TLPQQFIKKYRLLLGEEASDFF-----SALEQGSVKKGFRWNPLKPAGLDMVQTYHSEEL 61
Query: 86 ETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGG 145
+ K G+ Q+ +A + + G VLD C+APGG
Sbjct: 62 QPAPYSNEGFLGTVN---GKSFLHQAGYEYSQEPSAMIVGTAAAAKPGEKVLDLCAAPGG 118
Query: 146 KTCHLLEIADIK--LISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINK 203
K+ L K L++ + R ++SEN++R + ++
Sbjct: 119 KSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIV------------------ 160
Query: 204 KTNN---RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNN 260
TN+ + + +FDRI+ D PC+G G+ R++P+ + K +IL++
Sbjct: 161 -TNHAPAELVPHFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSS 219
Query: 261 LWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLL----------PTV 310
KMLK G+L++ TC+ EE+EE +N+ +I Q + +
Sbjct: 220 AIKMLKNKGQLIYSTCTFAPEENEEIISWLVENYPVTIEEIPLTQSVSSGRSEWGSVAGL 279
Query: 311 NK-------KQDYDGFFYSLFQKRKE 329
K K +G F + +
Sbjct: 280 EKTIRIWPHKDQGEGHFVAKLTFHGQ 305
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF,
adoMet, MULT specific, methyltransferase, transferase;
HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A*
3m6u_A* 3m6x_A*
Length = 464
Score = 177 bits (452), Expect = 2e-52
Identities = 70/296 (23%), Positives = 112/296 (37%), Gaps = 49/296 (16%)
Query: 58 KKPPLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCS 115
K LR+N K + S I P F+ G
Sbjct: 28 GKRTYGLRVNTLKLPP---EAFQRISPWPLRPIPWCQEGFYYPEEARPGPHPFFYAGLYY 84
Query: 116 IQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIK--LISVDNNLSRLNMISE 173
IQ+ +AQ LLD + G VLD +APGGKT HL K L++ + + R+ + E
Sbjct: 85 IQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLE 144
Query: 174 NLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNK---YFDRILADLPCTGSG 230
N++R T R YF R+L D PC+G G
Sbjct: 145 NVERWGAP--------------------LAVTQAPPRALAEAFGTYFHRVLLDAPCSGEG 184
Query: 231 VVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIF 290
+ R++ + + K++++ +L ++L PGG L++ TC+ EE+E F
Sbjct: 185 MFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGVVAHF 244
Query: 291 SKNHKD----SIRLNSPG--------QLLPTVNK-------KQDYDGFFYSLFQKR 327
K H + RL+ + P + K + + +G F + F+K
Sbjct: 245 LKAHPEFRLEDARLHPLFAPGVPEWGEGNPELLKTARLWPHRLEGEGHFLARFRKE 300
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.8 bits (108), Expect = 1e-05
Identities = 57/342 (16%), Positives = 90/342 (26%), Gaps = 140/342 (40%)
Query: 43 YP---NFFQWKNILDVGHKKP------------PL-TLRINQRKTTLISYNKLLKKSGLE 86
+ N +W L+ P PL + L Y K G
Sbjct: 209 FTQGLNILEW---LENPSNTPDKDYLLSIPISCPLIGV------IQLAHYVVTAKLLGFT 259
Query: 87 -----------TT----IIGPLAI-----------KLHTPISISKIPKFFNGFCSIQDAA 120
T ++ +AI + I++ FF G
Sbjct: 260 PGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL----FFIG------VR 309
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNM---------I 171
A P + + + D+ G +L I+++ V + +++ N I
Sbjct: 310 CYEAYPNTSLPPSI-LEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI 368
Query: 172 S--------------ENLKRLNL-----KATLILSDISKINL--KKLYIDINKKTNNRF- 209
S ++L LNL KA L D S+I +KL K +NRF
Sbjct: 369 SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGL-DQSRIPFSERKL------KFSNRFL 421
Query: 210 ----RF---YKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKK----------LSK 252
F D I DL ++ + DI+ L
Sbjct: 422 PVASPFHSHLLVPASDLINKDLV---------KNNVSF--NAKDIQIPVYDTFDGSDLRV 470
Query: 253 YSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH 294
S I + + W E F H
Sbjct: 471 LSGSISERIVDC-------IIRLPVKW-----ETTTQFKATH 500
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet,
methyltransferase fold, structura genomics, transferase;
HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Length = 207
Score = 44.3 bits (104), Expect = 1e-05
Identities = 32/193 (16%), Positives = 67/193 (34%), Gaps = 36/193 (18%)
Query: 101 ISISKIPKFFNGFCSIQD--------AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE 152
I++SK+ F N ++ + A L G V D + G + L
Sbjct: 10 IALSKLKGFKNPKVWLEQYRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALL 69
Query: 153 IADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFY 212
+ ++I V+ + ++++ ENL K + + D+S+ N +
Sbjct: 70 LGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSR----------------- 112
Query: 213 KNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKI----LNNLWKMLKPG 268
D ++ + P G R++ D P+L + +I + + K
Sbjct: 113 ----VDIVIMNPPF---GSQRKHADRPFLLKAFEISDVVYSIHLAKPEVRRFIEKFSWEH 165
Query: 269 GKLLFVTCSLWFE 281
G ++ + E
Sbjct: 166 GFVVTHRLTTKIE 178
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET:
PGE GOL; 2.00A {Clostridium acetobutylicum}
Length = 209
Score = 43.7 bits (103), Expect = 2e-05
Identities = 20/176 (11%), Positives = 47/176 (26%), Gaps = 39/176 (22%)
Query: 123 LAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKA 182
+ VLD + + K ++ + +L + N K
Sbjct: 14 FLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKL 73
Query: 183 TLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLR 242
+ DI K+ +K++ + G+ R D+
Sbjct: 74 NISKGDIRKLP------------------FKDESMSFVY----SYGTIFHMRKNDVK--- 108
Query: 243 RKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSI 298
+ ++ + ++LKPGG + +E + + +
Sbjct: 109 -------------EAIDEIKRVLKPGGLACINFLT-TKDERYNKGEKIGEGEFLQL 150
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon
SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Length = 383
Score = 43.5 bits (102), Expect = 6e-05
Identities = 25/164 (15%), Positives = 47/164 (28%), Gaps = 27/164 (16%)
Query: 126 PLLDIRSGMYVLDACSAPGGKTCHLLEI--ADIKLISVDNNLSRLNMISENLKRLNLKAT 183
P G VLD G ++ K+I VD + + K + A
Sbjct: 77 PADGSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDN---QLEVARKYVEYHAE 133
Query: 184 LILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRR 243
S+ N++ L I + D +++ + V + +
Sbjct: 134 KFFGSPSRSNVRFLKGFIENLATAEPEGVPDSSVDIVIS------NCVCNLSTNKL---- 183
Query: 244 KNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQA 287
+ + ++L+ GG+L F SE
Sbjct: 184 ------------ALFKEIHRVLRDGGELYFSDVYADRRLSEAAQ 215
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; HET:
SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 42.0 bits (99), Expect = 1e-04
Identities = 26/154 (16%), Positives = 48/154 (31%), Gaps = 43/154 (27%)
Query: 127 LLDIRSGMYVLDACSAPGGKTCHLLEIADI--KLISVDNNLSRLNMISENLKRLNLK-AT 183
++ GM VLD + G +L ++ K+ ++D +N E + +L LK
Sbjct: 32 EFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVE 91
Query: 184 LILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRR 243
++ S+ +KI L + D I + +
Sbjct: 92 VLKSEENKIPLP------------------DNTVDFIFM------AFTFHELSEPL---- 123
Query: 244 KNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277
K L L ++ KP L +
Sbjct: 124 ------------KFLEELKRVAKPFAYLAIIDWK 145
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.9 bits (100), Expect = 1e-04
Identities = 52/342 (15%), Positives = 105/342 (30%), Gaps = 91/342 (26%)
Query: 36 INQVKITYPNFFQWKN------ILD-VGHKKPPLTLR-INQRKTTLISYNKLLKKSGLET 87
I+ ++ + K +L V + K N L+ T
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAK---AWNAFNLSCKILL------------T 271
Query: 88 T----IIGPLAIKLHTPISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAP 143
T + L+ T IS+ D L LD R +
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLT-----PDEVKSLLLKYLDCRPQDLPREVL--- 323
Query: 144 GGKTCHLLEIADIKLI--SVDNNLSRLNMISENLKRLNLKA--TLILSDISKIN---LKK 196
T + ++ +I S+ + L+ +N K +N T+I S ++ + +K
Sbjct: 324 ---TTNPRRLS---IIAESIRDGLATW----DNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
Query: 197 LY---------IDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD-----IPWLR 242
++ I + F K ++ + +V + P IP +
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK-LHKYSLVEKQPKESTISIPSIY 432
Query: 243 RKNDIKKLSKYSC--KILN--NLWKMLKPGGKLLFVTCSLWFE---------ESEEQAII 289
+ +K ++Y+ I++ N+ K + ++ E E+ +
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492
Query: 290 FS-----------KNHKDSIRLNSPGQLLPTVNKKQDYDGFF 320
F K DS N+ G +L T+ + + Y +
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI 534
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase,
S-adenosyl-methionine, 23S ribosoma transferase; HET:
SAM; 1.70A {Thermus thermophilus}
Length = 393
Score = 40.8 bits (96), Expect = 4e-04
Identities = 26/162 (16%), Positives = 52/162 (32%), Gaps = 31/162 (19%)
Query: 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDI 189
+R G VLD S GG ++VD +L L ++ + RL L+ + +
Sbjct: 212 VRPGERVLDVYSYVGGFALRAARKGA-YALAVDKDLEALGVLDQAALRLGLRVDIRHGEA 270
Query: 190 SKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKK 249
R + F +L D P ++R ++
Sbjct: 271 LPT----------------LRGLEGP-FHHVLLDPP-------------TLVKRPEELPA 300
Query: 250 LSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFS 291
+ ++ ++ ++L G L +CS + +
Sbjct: 301 MKRHLVDLVREALRLLAEEGFLWLSSCSYHLRLEDLLEVARR 342
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250,
NESG, structural genomics, PSI-2; HET: SAM; 1.68A
{Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A*
3t7r_A* 3t7t_A*
Length = 267
Score = 39.5 bits (92), Expect = 9e-04
Identities = 27/175 (15%), Positives = 57/175 (32%), Gaps = 43/175 (24%)
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKR 177
+ + + + ++ + D GG+T L ++ +D +++ + N ++
Sbjct: 32 EVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQ 91
Query: 178 LNL--KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRN 235
L + T I+ + + ++N+ D I + G + N
Sbjct: 92 SGLQNRVTGIVGSMDDLP------------------FRNEELDLIWS------EGAI-YN 126
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIF 290
+ LN K LK GG L CS + +E + F
Sbjct: 127 IGFE----------------RGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDF 165
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
PDB: 3t0i_A* 3svz_A* 3sxj_A*
Length = 257
Score = 39.1 bits (91), Expect = 0.001
Identities = 27/180 (15%), Positives = 54/180 (30%), Gaps = 50/180 (27%)
Query: 114 CSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNN---LSRLNM 170
+A + + + ++ + D GG+T L + ++ +D + N
Sbjct: 28 PGSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFN- 86
Query: 171 ISENLKRLNL--KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTG 228
EN + N + I + + ++N+ D I +
Sbjct: 87 --ENAVKANCADRVKGITGSMDNLP------------------FQNEELDLIWS------ 120
Query: 229 SGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAI 288
G + N + +N K LK GG + V+ + WF I
Sbjct: 121 EGAI-YNIGFE----------------RGMNEWSKYLKKGGFIA-VSEASWFTSERPAEI 162
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.90A {Escherichia coli} SCOP:
c.66.1.21
Length = 256
Score = 39.0 bits (91), Expect = 0.001
Identities = 27/198 (13%), Positives = 51/198 (25%), Gaps = 48/198 (24%)
Query: 117 QDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSR--LNMISEN 174
+ +L ++ G +LD S G C I +D +S
Sbjct: 21 TEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGID--MSSLFTAQAKRR 78
Query: 175 LKRLNL--KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVV 232
+ L + + I +D N+ D C G+ +
Sbjct: 79 AEELGVSERVHFIHND---------AAGYV----------ANEKCDVAA----CVGATWI 115
Query: 233 RRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSK 292
+ L + LKPGG +L + W + + I +
Sbjct: 116 AGG--------------FAGA----EELLAQSLKPGGIML-IGEPYWRQLPATEEIAQAC 156
Query: 293 NHKDSIRLNSPGQLLPTV 310
+ + L+
Sbjct: 157 GVSSTSDFLTLPGLVGAF 174
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural
genomics, PSI, protein structure initiative; 1.80A
{Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Length = 396
Score = 39.4 bits (92), Expect = 0.001
Identities = 29/164 (17%), Positives = 61/164 (37%), Gaps = 29/164 (17%)
Query: 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL--KATLILS 187
++ G VLD + GG H ++I +D + + EN K + + I+
Sbjct: 215 VQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVG 274
Query: 188 DISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDI 247
+ ++KL K + FD ++ D P +++ + D+
Sbjct: 275 SAFEE-MEKLQ-------------KKGEKFDIVVLDPP-------------AFVQHEKDL 307
Query: 248 KKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFS 291
K + + ++K GG L+ +CS + + +I +
Sbjct: 308 KAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIA 351
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI,
intermolecular contacts, R specificity, tetramer,
disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB:
3lga_A* 3lhd_C*
Length = 255
Score = 38.8 bits (90), Expect = 0.001
Identities = 32/179 (17%), Positives = 55/179 (30%), Gaps = 51/179 (28%)
Query: 112 GFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA--DIKLISVDNNLSRLN 169
G + A L I G ++++A G T L I + +++S +
Sbjct: 73 GPQIVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAK 132
Query: 170 MISENLKRLNLKA--TLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCT 227
+ EN+K T+ L DI + + D ++ DLP
Sbjct: 133 LAWENIKWAGFDDRVTIKLKDIY-------------------EGIEEENVDHVILDLPQ- 172
Query: 228 GSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLL-FVTCSLWFEESEE 285
P +++ + K LKPGG + + CS E
Sbjct: 173 -----------PE---------------RVVEHAAKALKPGGFFVAYTPCSNQVMRLHE 205
>1yb2_A Hypothetical protein TA0852; structural genomics,
methyltransferase, thermoplasma acidoph midwest center
for structural genomics, MCSG; 2.01A {Thermoplasma
acidophilum} SCOP: c.66.1.13
Length = 275
Score = 38.5 bits (89), Expect = 0.001
Identities = 28/160 (17%), Positives = 49/160 (30%), Gaps = 52/160 (32%)
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA--DIKLISVDNNLSRLNMISENL 175
DA+ + +R GM +L+ G + ++L L V+ + L +NL
Sbjct: 98 DASYIIM--RCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNL 155
Query: 176 KRLNLKA--TLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVR 233
SDI+ F ++ +D ++AD+P
Sbjct: 156 SEFYDIGNVRTSRSDIAD-------------------FISDQMYDAVIADIPD------- 189
Query: 234 RNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 273
PW + + M+KPG F
Sbjct: 190 -----PW---------------NHVQKIASMMKPGSVATF 209
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 38.0 bits (88), Expect = 0.002
Identities = 28/160 (17%), Positives = 53/160 (33%), Gaps = 42/160 (26%)
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEI-ADIKLISVDNNLSRLNMISENLK 176
+ +L G VL+A G +T L + D ++ S+D + L EN +
Sbjct: 23 ETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTE 82
Query: 177 RLNLK-ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRN 235
+ +K + ++I + +++ FD I V+
Sbjct: 83 KNGIKNVKFLQANIFSLP------------------FEDSSFDHIFVCF------VLEHL 118
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275
+ L +L K+LKPGG + +
Sbjct: 119 QSPE----------------EALKSLKKVLKPGGTITVIE 142
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich,
structural genomics, PSI-2, protein structure
initiative; 2.21A {Corynebacterium diphtheriae}
Length = 178
Score = 37.4 bits (87), Expect = 0.003
Identities = 24/183 (13%), Positives = 43/183 (23%), Gaps = 50/183 (27%)
Query: 120 AAQLAAPLLDIRSGMYVLDACSAPGGKTCHL-LEIADIKLISVDNNLSRLNMISENLKRL 178
A ++A L + + D G + + + R I N L
Sbjct: 15 ALAISA--LAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINL 72
Query: 179 NLKA-TLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
+ + + + + D I G P
Sbjct: 73 GVSDRIAVQQGAPRA-FDDVPDN----------------PDVIFI-------GGGLTAPG 108
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
+ WK L GG+L+ ++ ESE+ K +
Sbjct: 109 V-------------------FAAAWKRLPVGGRLVANAVTV---ESEQMLWALRKQFGGT 146
Query: 298 IRL 300
I
Sbjct: 147 ISS 149
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 35.1 bits (81), Expect = 0.022
Identities = 13/48 (27%), Positives = 19/48 (39%)
Query: 117 QDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNN 164
D LLD+RSG VLD G L D+++ + +
Sbjct: 46 TDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISIS 93
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted
transferase, predicted O-methyltransferase, PFAM
PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Length = 260
Score = 34.9 bits (80), Expect = 0.026
Identities = 17/170 (10%), Positives = 50/170 (29%), Gaps = 23/170 (13%)
Query: 111 NGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLL-EIADIKLISVDNN----- 164
F DA L A L+ + D + G + + ++ + +
Sbjct: 17 LYFQGHMDAM--LLASLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAE 74
Query: 165 LSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADL 224
+R ++ + + + ++ +D++ +++F ++ +
Sbjct: 75 FARRSLELPDNAAFSARIEVLEADVTLRAKA-----------RVEAGLPDEHFHHVIMNP 123
Query: 225 PCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274
P +G R + + ++ GG+L +
Sbjct: 124 PYNDAGDRRTPDALKAEAHAMTEGLFED----WIRTASAIMVSGGQLSLI 169
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold,
protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo
sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A*
2aox_A* 1jqe_A* 2aow_A*
Length = 292
Score = 34.3 bits (78), Expect = 0.045
Identities = 18/167 (10%), Positives = 45/167 (26%), Gaps = 37/167 (22%)
Query: 116 IQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEI-------ADIKLISVDNNLSRL 168
+ + + D +S + +L G +L I V+ + ++
Sbjct: 36 MDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQI 95
Query: 169 NMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTG 228
E + + S++ + ++ + + + +D I
Sbjct: 96 AKYKELVAKT--------SNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHM------ 141
Query: 229 SGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275
++ DIP L +L K+L +
Sbjct: 142 IQMLYYVKDIP----------------ATLKFFHSLLGTNAKMLIIV 172
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus,
methyltransferase, adoMet, structural genomics; 1.80A
{Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB:
1wxw_A 2cww_A*
Length = 382
Score = 33.9 bits (78), Expect = 0.057
Identities = 32/161 (19%), Positives = 62/161 (38%), Gaps = 29/161 (18%)
Query: 132 SGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL-KATLILSDIS 190
G LD S GG HL ++++VD++ L EN + L ++ ++
Sbjct: 209 RGERALDVFSYAGGFALHLALGFR-EVVAVDSSAEALRRAEENARLNGLGNVRVLEANAF 267
Query: 191 KINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL 250
+ L++L + + FD ++ D P + + K D+++
Sbjct: 268 DL-LRRLE-------------KEGERFDLVVLDPP-------------AFAKGKKDVERA 300
Query: 251 SKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFS 291
+ ++ K+LK GG L +CS E A++
Sbjct: 301 YRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAE 341
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI,
protein structure initiative, joint center for structu
genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Length = 277
Score = 33.4 bits (76), Expect = 0.073
Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 2/71 (2%)
Query: 112 GFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADI--KLISVDNNLSRLN 169
+ + A +LD++ G ++D G L K+ + +
Sbjct: 92 RTQIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAK 151
Query: 170 MISENLKRLNL 180
+ NL + L
Sbjct: 152 LAESNLTKWGL 162
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.082
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 30/55 (54%)
Query: 80 LKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGM 134
LKK L+ ++ KL+ D+A P L I++ M
Sbjct: 22 LKK--LQASL------KLYAD-----------------DSA-----PALAIKATM 46
Score = 29.1 bits (64), Expect = 1.1
Identities = 7/27 (25%), Positives = 14/27 (51%), Gaps = 4/27 (14%)
Query: 284 EEQAIIFSKNHKDSIRLNSPGQLLPTV 310
E+QA+ K + S++L + P +
Sbjct: 18 EKQAL---KKLQASLKLYADDS-APAL 40
Score = 28.0 bits (61), Expect = 2.5
Identities = 6/25 (24%), Positives = 9/25 (36%), Gaps = 8/25 (32%)
Query: 244 KNDIKKLSKYSCKILNNLWKMLKPG 268
K +KKL +L K+
Sbjct: 19 KQALKKLQ-------ASL-KLYADD 35
>2b78_A Hypothetical protein SMU.776; structure genomics,
methyltransferase, caries, structural genomics, unknown
function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9
c.66.1.51 PDB: 3ldf_A*
Length = 385
Score = 32.6 bits (75), Expect = 0.16
Identities = 25/162 (15%), Positives = 53/162 (32%), Gaps = 30/162 (18%)
Query: 133 GMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL---KATLILSDI 189
G VL+ S + + SVD + + + +L L++ D+
Sbjct: 213 GKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDV 272
Query: 190 SKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKK 249
K ++ + + D I+ D P + R K ++
Sbjct: 273 FDY-FKYA-----RRHHLTY--------DIIIIDPP-------------SFARNKKEVFS 305
Query: 250 LSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFS 291
+SK K++ ++L G ++ T + S+ + I
Sbjct: 306 VSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEK 347
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA
PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Length = 375
Score = 32.8 bits (74), Expect = 0.16
Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDN 163
+ +GM+ +D + PGG T L++ ++ + SVDN
Sbjct: 209 LANGMWAVDLGACPGGWTYQLVK-RNMWVYSVDN 241
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent
methyltransferase fold; 2.00A {Escherichia coli K12}
Length = 396
Score = 32.7 bits (75), Expect = 0.16
Identities = 34/163 (20%), Positives = 59/163 (36%), Gaps = 30/163 (18%)
Query: 132 SGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL---KATLILSD 188
VL+ S GG L +++SVD + L++ +N++ L KA + D
Sbjct: 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDD 279
Query: 189 ISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIK 248
+ K+ L+ + + FD I+ D P ++ K+ +
Sbjct: 280 VFKL-LRTYR-------------DRGEKFDVIVMDPP-------------KFVENKSQLM 312
Query: 249 KLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFS 291
+ I ++L GG LL +CS Q II
Sbjct: 313 GACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIAD 355
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division,
structural genomics, protein structure initiative, PSI;
HET: SAM; 1.45A {Thermoplasma volcanium}
Length = 191
Score = 31.7 bits (73), Expect = 0.20
Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 17/78 (21%)
Query: 130 IRSGMYVLDACSAPGG-------KTCH-----LLEIADIK---LISVD-NNLSRLNMISE 173
+R G V++ S+PGG L E+ +I I D + + I
Sbjct: 23 VRKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEMEEIAGVRFIRCDIFKETIFDDIDR 82
Query: 174 NLKRLNL-KATLILSDIS 190
L+ + K ++SD
Sbjct: 83 ALREEGIEKVDDVVSDAM 100
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 31.8 bits (72), Expect = 0.23
Identities = 25/165 (15%), Positives = 45/165 (27%), Gaps = 53/165 (32%)
Query: 116 IQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENL 175
+ AA L VL+ S G T HL +AD ++ ++D S MI+E
Sbjct: 30 MDSAAPAALERLRAGNIRGDVLELASGTGYWTRHLSGLAD-RVTALD--GSA-EMIAEAG 85
Query: 176 KRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILAD-----LPCTGSG 230
+ D+ ++ +D + +P
Sbjct: 86 RHGLDNVEFRQQDLFDWTP-------------------DRQWDAVFFAHWLAHVP----- 121
Query: 231 VVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275
+ ++ + PGG + FV
Sbjct: 122 ----DDRFE----------------AFWESVRSAVAPGGVVEFVD 146
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 31.2 bits (71), Expect = 0.24
Identities = 28/205 (13%), Positives = 58/205 (28%), Gaps = 57/205 (27%)
Query: 126 PLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLI 185
P + ++D G +LLE A KL +D N+ L + E +
Sbjct: 11 PNIFEGKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEKFDS-------V 62
Query: 186 LSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKN 245
++ + + D IL + D
Sbjct: 63 ITLSDPKEIP------------------DNSVDFILF------ANSFHDMDDKQ------ 92
Query: 246 DIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS---------LWFEESEEQAIIFSKNHKD 296
+++ + ++LK G+++ + L E+ + + N
Sbjct: 93 ----------HVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFSNFVV 142
Query: 297 SIRLNSPGQLLPTVNKKQDYDGFFY 321
R N V K++ +G +
Sbjct: 143 EKRFNPTPYHFGLVLKRKTSEGHHH 167
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural
genomics, structural genomics consortium, SGC; HET: SAM;
1.76A {Homo sapiens}
Length = 196
Score = 31.3 bits (72), Expect = 0.26
Identities = 18/89 (20%), Positives = 28/89 (31%), Gaps = 30/89 (33%)
Query: 130 IRSGMYVLDACSAPGG----------KTCHLLEIADIKLISVD----------------- 162
+R G+ VLD +APG ++ VD
Sbjct: 20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFLCPAD 79
Query: 163 -NNLSRLNMISENLKRLNLKATLILSDIS 190
+ I E L +A +ILSD++
Sbjct: 80 VTDPRTSQRILEVLP--GRRADVILSDMA 106
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural
genomics, joint center for structural genom JCSG; HET:
SAH; 2.10A {Pseudomonas putida KT2440}
Length = 227
Score = 31.7 bits (72), Expect = 0.26
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 256 KILNNLWKMLKPGGKLLFVTCSLWFEESEEQ 286
++L+ + +L PGG L+ T W +
Sbjct: 133 ELLSAMRTLLVPGGALVIQTLHPWSVADGDY 163
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock
proteins, 23S ribosomal RNA; HET: SAM; 1.50A
{Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Length = 180
Score = 31.3 bits (72), Expect = 0.26
Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 21/80 (26%)
Query: 130 IRSGMYVLDACSAPGG------KTCH---------LLEIADIK---LISVD-NNLSRLNM 170
+ GM V+D +APGG LL + I + D + +
Sbjct: 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRDELVMKA 79
Query: 171 ISENLKRLNLKATLILSDIS 190
+ E + + K +++SD++
Sbjct: 80 LLERVG--DSKVQVVMSDMA 97
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase
binding, liver cytosol, transferase-transferase
inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus}
PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 293
Score = 31.9 bits (72), Expect = 0.27
Identities = 27/150 (18%), Positives = 42/150 (28%), Gaps = 31/150 (20%)
Query: 127 LLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMIS---ENLKRLNLKAT 183
LL VLD G + L+E + SVD S M+ + +
Sbjct: 52 LLRQHGCHRVLDVACGTGVDSIMLVE-EGFSVTSVD--ASD-KMLKYALKERWNRRKEPA 107
Query: 184 LILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRR 243
I + N L D FD ++ + + R
Sbjct: 108 FDKWVIEEANWLTLDKD----------VPAGDGFDAVIC--LGNSFAHLPDSKGDQSEHR 155
Query: 244 KNDIKKLSKYSCKILNNLWKMLKPGGKLLF 273
L N+ M++PGG L+
Sbjct: 156 L------------ALKNIASMVRPGGLLVI 173
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics
consortium (NESG), PSI-2, protein structure initiative,
unknown function; NMR {Synechocystis} PDB: 3mer_A
Length = 202
Score = 31.0 bits (70), Expect = 0.37
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 6/52 (11%)
Query: 256 KILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLL 307
++ +++ LKPGG + F + EQ + KD L L
Sbjct: 112 QLYPKVYQGLKPGGVFILEG----F--APEQLQYNTGGPKDLDLLPKLETLQ 157
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic
resistance, aminoglycoside, S-adenosyl-L-methionine;
HET: SAH; 1.69A {Streptomyces SP}
Length = 218
Score = 31.2 bits (70), Expect = 0.39
Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 3/74 (4%)
Query: 213 KNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLL 272
N + A+ SGV + +PW + + S ++L + + +PG L
Sbjct: 81 PNLLYLWATAERLPPLSGVGELHVLMPWGSLL---RGVLGSSPEMLRGMAAVCRPGASFL 137
Query: 273 FVTCSLWFEESEEQ 286
+ S +
Sbjct: 138 VALNLHAWRPSVPE 151
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 252
Score = 31.0 bits (70), Expect = 0.46
Identities = 26/173 (15%), Positives = 56/173 (32%), Gaps = 39/173 (22%)
Query: 128 LDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILS 187
R VLD G T L E +++ +D + L + K NLK +
Sbjct: 37 DAKREVRRVLDLACGTGIPTLELAE-RGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQG 95
Query: 188 DISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDI 247
D+ +I FD + S ++ + + D+
Sbjct: 96 DVLEIAF-------------------KNEFDAVT----MFFSTIMYFDEE--------DL 124
Query: 248 KKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
+K + + + + LKPGG + ++ + + + ++ + +
Sbjct: 125 RK-------LFSKVAEALKPGGVFITDFPCWFYGGRDGPVVWNEQKGEEKLVI 170
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 30.5 bits (68), Expect = 0.63
Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 2/77 (2%)
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLL-EIADIKLISVDNNLSRLNMISENLKRLN 179
+ A L R G + P T LL + +++ V+ + + ++ L
Sbjct: 111 LKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLG 170
Query: 180 L-KATLILSDISKINLK 195
+ +I D + I+
Sbjct: 171 VDGVNVITGDETVIDGL 187
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP:
c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A*
Length = 278
Score = 30.7 bits (69), Expect = 0.64
Identities = 19/168 (11%), Positives = 43/168 (25%), Gaps = 46/168 (27%)
Query: 136 VLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLK 195
V+D + G + + K+I+++ + + EN+ ++
Sbjct: 129 VVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDR------------ 176
Query: 196 KLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSC 255
++ + F DRIL +
Sbjct: 177 -----MSAYNMDNRDFPGENIADRILMGYV--------------------------VRTH 205
Query: 256 KILNNLWKMLKPGGKL---LFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
+ + + K G + V L E E +K + +
Sbjct: 206 EFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEK 253
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural
genomics, protein structure initiative, PSI-2; 1.95A
{Galdieria sulphuraria} SCOP: c.66.1.18
Length = 297
Score = 30.6 bits (69), Expect = 0.65
Identities = 7/48 (14%), Positives = 16/48 (33%)
Query: 117 QDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNN 164
+ A A ++ LD + GG L+ + + ++
Sbjct: 67 DEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIA 114
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural
genomics, beta barrel, rossmann fold, tetramer; HET:
SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP:
c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Length = 192
Score = 30.0 bits (68), Expect = 0.72
Identities = 29/174 (16%), Positives = 57/174 (32%), Gaps = 57/174 (32%)
Query: 120 AAQLAAPLLDIRSGMYVLD--ACSAPGGKTCHLLEIADI--KLISVDNNLSRLNMISENL 175
+ + +D + GG T LE+A ++ ++D N ++ NL
Sbjct: 23 CLIMCL--AEPGKNDVAVDVGCGT--GGVT---LELAGRVRRVYAIDRNPEAISTTEMNL 75
Query: 176 KRLNLKATL-ILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRR 234
+R L + ++ + L K+ D + GSG +
Sbjct: 76 QRHGLGDNVTLMEGDAPEALCKI-----------------PDIDIAVVG----GSGGELQ 114
Query: 235 NPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAI 288
+IL + LKPGG+++ L E++ +A+
Sbjct: 115 ---------------------EILRIIKDKLKPGGRIIVTAILL---ETKFEAM 144
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH;
1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A*
3mte_A*
Length = 225
Score = 30.1 bits (67), Expect = 0.78
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275
PW ++ + K + IL+N+ + K FVT
Sbjct: 104 LFPW---GTLLEYVIKPNRDILSNVADLAKKEAHFEFVT 139
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural
genomics, structural genomics consortium, SGC; HET: SAM;
1.70A {Plasmodium falciparum}
Length = 201
Score = 29.5 bits (67), Expect = 1.0
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 130 IRSGMYVLDACSAPGG 145
++ +LD PG
Sbjct: 20 LKKNKIILDIGCYPGS 35
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate,
tailoring enzyme, polyketide, S-adenosyl-L-homocystein;
HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP:
a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Length = 360
Score = 30.0 bits (68), Expect = 1.2
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 256 KILNNLWKMLKPGGKLL 272
+IL + L+PGG++L
Sbjct: 269 RILTRCAEALEPGGRIL 285
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics,
PSI-2, protein ST initiative; 1.95A {Haemophilus
influenzae}
Length = 286
Score = 29.5 bits (66), Expect = 1.2
Identities = 30/186 (16%), Positives = 57/186 (30%), Gaps = 40/186 (21%)
Query: 90 IGPLAIKLHTPISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCH 149
+ L+ L + + + A I S VLD G + +
Sbjct: 78 VEALSDDLECTLGFYCKKEDYFSKKYNTTAIHGDVVDAAKIISPCKVLDLGCGQGRNSLY 137
Query: 150 LLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRF 209
L + S D+N + + ++E ++ NL + L DI+ N++
Sbjct: 138 LSL-LGYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQ-------------- 182
Query: 210 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 269
+ +D I+ T + +P I+ N+ + GG
Sbjct: 183 -----ENYDFIV----STVVFMFLNRERVP----------------SIIKNMKEHTNVGG 217
Query: 270 KLLFVT 275
L V
Sbjct: 218 YNLIVA 223
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 29.5 bits (66), Expect = 1.2
Identities = 23/147 (15%), Positives = 48/147 (32%), Gaps = 39/147 (26%)
Query: 129 DIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSD 188
++ VLD GG + L + +++ VD + + E K I+ D
Sbjct: 35 YMKKRGKVLDLACGVGGFSFLLED-YGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGD 93
Query: 189 ISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIK 248
K++ +++K FD ++ S V ++
Sbjct: 94 ARKLS------------------FEDKTFDYVI----FIDSIVHFEPLELN--------- 122
Query: 249 KLSKYSCKILNNLWKMLKPGGKLLFVT 275
++ + ++LKP GK +
Sbjct: 123 -------QVFKEVRRVLKPSGKFIMYF 142
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH;
2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A*
3i5u_A* 3i64_A*
Length = 332
Score = 29.5 bits (67), Expect = 1.5
Identities = 5/17 (29%), Positives = 7/17 (41%)
Query: 256 KILNNLWKMLKPGGKLL 272
IL + GG +L
Sbjct: 255 AILRRCAEAAGSGGVVL 271
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory
domains, kinase transferase, PSI-2, protein structure
initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Length = 446
Score = 29.2 bits (66), Expect = 1.8
Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 140 CSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYI 199
SAPG +T +I D L + ++ + K ++ + T I+S+++ Y+
Sbjct: 38 PSAPGKRTNKDYKITD-LLYLCNAHVKNGIPFDDVFKLISQRYTEIVSELNIDMDIAYYL 96
Query: 200 DINKKTNNRFRFYKNKYFDRILA 222
+ KK D +
Sbjct: 97 EKVKK-----NIENGASSDYAAS 114
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium,
SGC, methyltransferase, LOC84291, transferase; HET: SAH;
1.30A {Homo sapiens}
Length = 215
Score = 28.8 bits (64), Expect = 2.2
Identities = 20/152 (13%), Positives = 48/152 (31%), Gaps = 32/152 (21%)
Query: 129 DIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSD 188
++R +L + L + SVD + + + + + D
Sbjct: 39 ELRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVP-QLRWETMD 97
Query: 189 ISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGV---VRRNPDIPWLRRKN 245
+ K++ + + FD +L G + PW
Sbjct: 98 VRKLD------------------FPSASFDVVLE------KGTLDALLAGERDPWTVSSE 133
Query: 246 DIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277
+ + + L+ + ++L PGG+ + +T +
Sbjct: 134 GVHTVDQV----LSEVSRVLVPGGRFISMTSA 161
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine,
transferase; HET: MSE SAH; 1.91A {Streptomyces
lavendulae} PDB: 3gxo_A*
Length = 369
Score = 28.9 bits (65), Expect = 2.2
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 256 KILNNLWKMLKPGGKLL 272
+IL + +KP +LL
Sbjct: 288 RILRRIATAMKPDSRLL 304
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD
factor, fixation, symbiosis, alpha/beta structure; HET:
SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Length = 216
Score = 28.6 bits (64), Expect = 2.2
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 256 KILNNLWKMLKPGGKLLFVT 275
++N+ KML PGG L+F +
Sbjct: 135 TAIDNMVKMLAPGGHLVFGS 154
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline,
methyltransferase, polyketide, tailoring enzymes,
structural proteomics in E spine; HET: SAM; 2.10A
{Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12
PDB: 1r00_A* 1xds_A* 1xdu_A*
Length = 374
Score = 28.9 bits (65), Expect = 2.6
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 256 KILNNLWKMLKPGGKLL 272
IL + L+PGG+LL
Sbjct: 268 TILRGCVRALEPGGRLL 284
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase;
structural genomics, PSI-2, protein structure
initiative; 2.35A {Listeria monocytogenes str}
Length = 253
Score = 28.3 bits (63), Expect = 2.9
Identities = 26/202 (12%), Positives = 53/202 (26%), Gaps = 52/202 (25%)
Query: 107 PKFFNGFCSIQDAAAQLAA--------PLLDIRSGMYVLDACSAPGGKTCHLLEIADIKL 158
FF + + + L A +L + VLD G + E K+
Sbjct: 11 KHFFEQYSQMPRSKEGLKAAGEWHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKV 70
Query: 159 ISVDNNLSRLNMISENLKRLNLKA-TLILSDISKINLKKLYIDINKKTNNRFRFYKNKYF 217
+ +D LS M++E ++ I I ++ +
Sbjct: 71 LGID--LSE-RMLTEAKRKTTSPVVCYEQKAIEDIAIE------------------PDAY 109
Query: 218 DRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277
+ +L+ L + ++ + ++ LK G +F
Sbjct: 110 NVVLSSLA------------LHYIA---SFDDI-------CKKVYINLKSSGSFIFSVEH 147
Query: 278 LWFEESEEQAIIFSKNHKDSIR 299
F Q +
Sbjct: 148 PVFTADGRQDWYTDETGNKLHW 169
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 28.6 bits (64), Expect = 3.0
Identities = 5/33 (15%), Positives = 14/33 (42%)
Query: 256 KILNNLWKMLKPGGKLLFVTCSLWFEESEEQAI 288
+ ++ + LK GG+ + + +A+
Sbjct: 135 AAIASIHQALKSGGRFVAEFGGKGNIKYILEAL 167
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU
genomics, PSI-2, protein structure initiative; HET: SAH;
2.40A {Micromonospora echinospora}
Length = 348
Score = 28.4 bits (64), Expect = 3.0
Identities = 5/17 (29%), Positives = 11/17 (64%)
Query: 256 KILNNLWKMLKPGGKLL 272
+IL N +++ G++L
Sbjct: 267 RILTNCRRVMPAHGRVL 283
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel,
structural genomics, PSI-2 structure initiative; HET:
MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP:
c.66.1.51
Length = 332
Score = 28.6 bits (64), Expect = 3.1
Identities = 7/48 (14%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 243 RKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT-CSLWFEESEEQAII 289
++ +L + +L+ ++L P L +T S+ ++
Sbjct: 240 THGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELM 287
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate,
protein-product complex; HET: SAH HCC; 1.82A {Medicago
sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Length = 372
Score = 28.7 bits (64), Expect = 3.2
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 256 KILNNLWKMLKPGGKLL 272
+ L+N K L P GK++
Sbjct: 287 EFLSNCHKALSPNGKVI 303
>2gp6_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiolase fold,
structural genomics, PSI, protein structure initiative;
2.40A {Mycobacterium tuberculosis}
Length = 434
Score = 28.3 bits (64), Expect = 3.5
Identities = 7/38 (18%), Positives = 13/38 (34%), Gaps = 2/38 (5%)
Query: 217 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYS 254
DLP G + D L R +++++
Sbjct: 65 PFVEEFDLPVRIGGHLLEEFD-HQLTRI-ELRRMGYLQ 100
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAM;
1.60A {Rhodopseudomonas palustris}
Length = 211
Score = 27.9 bits (62), Expect = 3.7
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 117 QDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE 152
Q +A L L ++ +G +L+ G + +L
Sbjct: 28 QPRSATLTKFLGELPAGAKILELGCGAGYQAEAMLA 63
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin,
phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Length = 334
Score = 28.0 bits (63), Expect = 4.3
Identities = 3/17 (17%), Positives = 10/17 (58%)
Query: 256 KILNNLWKMLKPGGKLL 272
++L N + + G+++
Sbjct: 253 RLLGNCREAMAGDGRVV 269
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase,
S-adenosylmethionine, structural GE NPPSFA; HET: SAM;
2.20A {Aquifex aeolicus}
Length = 248
Score = 28.0 bits (62), Expect = 4.4
Identities = 23/151 (15%), Positives = 41/151 (27%), Gaps = 45/151 (29%)
Query: 127 LLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLIL 186
L++ VL+ + G L E+A ++ + + +NLK+ NL
Sbjct: 86 KLNLNKEKRVLEFGTGSGALLAVLSEVAG-EVWTFEAVEEFYKTAQKNLKKFNLGK---- 140
Query: 187 SDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKND 246
N+K +D + F D+ PW
Sbjct: 141 ------NVKFFNVDF------KDAEVPEGIFHAAFVDVRE------------PW------ 170
Query: 247 IKKLSKYSCKILNNLWKMLKPGGKL-LFVTC 276
L + K L G + +
Sbjct: 171 ---------HYLEKVHKSLMEGAPVGFLLPT 192
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 27.9 bits (63), Expect = 4.6
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 162 DNNLSRLNMISE--NLKRLNLKATLILSDISKI----NLKKLYIDINK 203
++N+S ++ ++ + LNL A LSD+S + L L + +K
Sbjct: 119 EDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK 166
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural
genomics, PSI, protein structure initiative; HET: MSE;
1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Length = 187
Score = 27.5 bits (62), Expect = 4.8
Identities = 10/72 (13%), Positives = 24/72 (33%), Gaps = 14/72 (19%)
Query: 161 VDNNLSRLNMISENLKRLNL--KATLILSDISKINLKKLYIDINKKTNNRFRF------Y 212
++ N + L +I EN+ K + D ++ ++ + +F Y
Sbjct: 73 IEKNFAALKVIKENIAITKEPEKFEVRKMDANR------ALEQFYEEKLQFDLVLLDPPY 126
Query: 213 KNKYFDRILADL 224
+ L +
Sbjct: 127 AKQEIVSQLEKM 138
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 27.5 bits (61), Expect = 5.0
Identities = 29/196 (14%), Positives = 55/196 (28%), Gaps = 60/196 (30%)
Query: 105 KIPKFFNGFCSIQD---------AAAQLAAPLLD--IRSGMYVLDACSAPGGKTCHLLEI 153
K ++ + + P + ++ VLD G T L
Sbjct: 15 SAEKKWDSSAEFWNQNSQEMWDSGSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSR- 73
Query: 154 ADIKLISVDNNLSRLNMIS---ENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFR 210
K + VD +S MI E + +L + I D+S +
Sbjct: 74 TGYKAVGVD--ISE-VMIQKGKERGEGPDL--SFIKGDLSSLP----------------- 111
Query: 211 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 270
++N+ F+ I+A + + + LN + ++LK G
Sbjct: 112 -FENEQFEAIMA------INSLEWTEEPL----------------RALNEIKRVLKSDGY 148
Query: 271 LLFVTCSLWFEESEEQ 286
+ E
Sbjct: 149 ACIAILGPTAKPRENS 164
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation
mutagenesis, regioselectivity transferase; HET: SAH EUG;
1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A*
Length = 368
Score = 27.9 bits (62), Expect = 5.3
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 256 KILNNLWKMLKPGGKLL 272
K+L N + L GK++
Sbjct: 281 KLLKNCYAALPDHGKVI 297
>3dmg_A Probable ribosomal RNA small subunit methyltransf;
monomethyltranserase, 16S rRNA methyltransferase, N2
G1207 methyltransferase; HET: SAH; 1.55A {Thermus
thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Length = 381
Score = 27.6 bits (61), Expect = 5.7
Identities = 17/111 (15%), Positives = 37/111 (33%), Gaps = 23/111 (20%)
Query: 171 ISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFY------KNKYFDRILADL 224
++ L R+ + + D++ + + ++ N + FD I+
Sbjct: 247 LTLPLARMGAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVT-- 304
Query: 225 PCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275
NP P+ I +++ +N L+PGG V+
Sbjct: 305 ----------NP--PFHVGGAVILDVAQ---AFVNVAAARLRPGGVFFLVS 340
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent
O-methyltransferase; HET: SAH; 1.80A {Lolium perenne}
PDB: 3p9i_A* 3p9k_A*
Length = 364
Score = 27.5 bits (61), Expect = 6.3
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 256 KILNNLWKMLKPGGKLL 272
+L N + L GK++
Sbjct: 279 TLLKNCYDALPAHGKVV 295
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2,
protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 27.1 bits (60), Expect = 6.8
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 258 LNNLWKMLKPGGKLLFVT 275
+ ++L GGK++F
Sbjct: 128 IAKYSQLLNKGGKIVFAD 145
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 27.0 bits (60), Expect = 7.8
Identities = 26/191 (13%), Positives = 58/191 (30%), Gaps = 46/191 (24%)
Query: 112 GFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNM 170
F + +A+ + +LD + G + L+E + VD + L +
Sbjct: 27 CFDDFYGVSVSIASVDTE---NPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEI 83
Query: 171 ISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSG 230
+ NLK I +D SK + ++ +D +++ L
Sbjct: 84 AKNRFRG-NLKVKYIEADYSKYDFEE-------------------KYDMVVSAL------ 117
Query: 231 VVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIF 290
I L ++ + + + +LK G + L E+ +
Sbjct: 118 ------SIHHLEDEDKKE--------LYKRSYSILKESGIFINAD--LVHGETAFIENLN 161
Query: 291 SKNHKDSIRLN 301
+ + +
Sbjct: 162 KTIWRQYVENS 172
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 27.5 bits (61), Expect = 7.9
Identities = 8/69 (11%), Positives = 25/69 (36%)
Query: 151 LEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFR 210
+E I + + + ++ + L+ L D + I++ ++ F
Sbjct: 230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG 289
Query: 211 FYKNKYFDR 219
F ++ ++
Sbjct: 290 FPQSYIYEI 298
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 27.3 bits (61), Expect = 8.0
Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 157 KLISVDNNLSRLNMISENLKRLNLKATLI--LSDISK-INLKKLYIDINK 203
L+ +NNL L+ + L+ L + + L ++ LK + +D N
Sbjct: 115 SLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNS 164
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 26.9 bits (60), Expect = 8.2
Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 157 KLISVDNNLSRLNMISE--NLKRLNLKATLI--LSDISKINLKKLYIDINK 203
+L N +S L+ + + L+ L++ + L+ I L +L++D N+
Sbjct: 67 ELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNE 117
Score = 26.9 bits (60), Expect = 9.0
Identities = 11/69 (15%), Positives = 25/69 (36%), Gaps = 7/69 (10%)
Query: 162 DNNLSRLNMISE--NLKRLNLKATLILSDISKI----NLKKLYIDINKKTNNRFRFYKNK 215
+N L + M+ L+ L+L I ++ + + + + K N ++
Sbjct: 137 NNKLKSIVMLGFLSKLEVLDLHGNEI-TNTGGLTRLKKVNWIDLTGQKCVNEPVKYQPEL 195
Query: 216 YFDRILADL 224
Y + D
Sbjct: 196 YITNTVKDP 204
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein;
ubiquinone/menaquinone biosynthesis
methyltransferase-relate protein; HET: SAI; 2.35A
{Thermotoga maritima} SCOP: c.66.1.41
Length = 260
Score = 26.7 bits (59), Expect = 9.3
Identities = 5/24 (20%), Positives = 12/24 (50%)
Query: 256 KILNNLWKMLKPGGKLLFVTCSLW 279
K + + ++L P G L+ + +
Sbjct: 133 KAFSEIRRVLVPDGLLIATVDNFY 156
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP
binding, binding, capsid protein; HET: GTA SAH; 1.45A
{Yellow fever virus} PDB: 3evb_A* 3evc_A* 3evd_A*
3eve_A* 3eva_A*
Length = 277
Score = 26.9 bits (59), Expect = 9.8
Identities = 10/78 (12%), Positives = 23/78 (29%), Gaps = 17/78 (21%)
Query: 130 IRSGMYVLDACSAPGGKTCHLLEIADI-----KLISVDN------------NLSRLNMIS 172
++ V+D GG + ++ + D N+ +
Sbjct: 72 VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKT 131
Query: 173 ENLKRLNLKATLILSDIS 190
+ + +K +L DI
Sbjct: 132 DIHRLEPVKCDTLLCDIG 149
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.423
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,058,343
Number of extensions: 296173
Number of successful extensions: 1000
Number of sequences better than 10.0: 1
Number of HSP's gapped: 949
Number of HSP's successfully gapped: 128
Length of query: 329
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 235
Effective length of database: 4,077,219
Effective search space: 958146465
Effective search space used: 958146465
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.2 bits)