RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15212
(329 letters)
>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit
methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 284
Score = 125 bits (314), Expect = 2e-34
Identities = 103/301 (34%), Positives = 170/301 (56%), Gaps = 24/301 (7%)
Query: 32 PIWWINQVKITYPNFFQWKNILDVGHKKPPLTLRINQRKTTLISYNKLLKKSGLETTIIG 91
P W + +++ YP QW++I++ +++PP+ LRIN+ + S+ LL ++G++
Sbjct: 2 PSWLLKRLQKAYPE--QWQSIVEANNQRPPMWLRINRTHHSRDSWLALLDEAGMKGFPHA 59
Query: 92 --PLAIKLHTPISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCH 149
P A++L TP + +P F +G+ ++QDA+AQ L ++G ++LD C+APGGKT H
Sbjct: 60 DYPDAVRLETPAPVHALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTH 119
Query: 150 LLEIADIK-LISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNR 208
+LE+A +++VD + RL+ + +NLKRL +KAT+ D
Sbjct: 120 ILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYP---------------- 163
Query: 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPG 268
++ + FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK G
Sbjct: 164 SQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTG 223
Query: 269 GKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVN---KKQDYDGFFYSLFQ 325
G L++ TCS+ EE+ Q F + D+ + P ++ DGFFY+
Sbjct: 224 GTLVYATCSVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGAEEGDGFFYAKLI 283
Query: 326 K 326
K
Sbjct: 284 K 284
>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 313
Score = 117 bits (293), Expect = 3e-31
Identities = 80/323 (24%), Positives = 125/323 (38%), Gaps = 47/323 (14%)
Query: 29 WNYPIWWINQVKITYPNFFQWKNILDVGHKKPPLTLRINQRKTTLISYNKLLKKSGLETT 88
Y + ++ + + I + K P R+N K ++ K L K G +
Sbjct: 12 LGYSKLFADRYFQLWGE--RAIRIAEAMEKPLPRCFRVNTLKISVQDLVKRLNKKGFQFK 69
Query: 89 IIGPL---AIKLHTPISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGG 145
+ P SI+ P+F G IQ+A++ LD + G V D +APGG
Sbjct: 70 RVPWAKEGFCLTREPFSITSTPEFLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGG 129
Query: 146 KTCHLLEIADIKLISVDNNLS--RLNMISENLKRLNLKATLILSDISKINLKKLYIDINK 203
KT +L ++ + ++ RL NL RL + I
Sbjct: 130 KTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLN-----------------VILF 172
Query: 204 KTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWK 263
+++ N FD+IL D PCTGSG + +NP+ W R +DIK ++L +
Sbjct: 173 HSSSLHIGELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLE 232
Query: 264 MLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPG------------------- 304
+LKPGG L++ TCSL EE+E N + G
Sbjct: 233 VLKPGGILVYSTCSLEPEENEFVIQWALDNFDVELLPLKYGEPALTNPFGIELSEEIKNA 292
Query: 305 -QLLPTVNKKQDYDGFFYSLFQK 326
+L P + GFF + +K
Sbjct: 293 RRLYP---DVHETSGFFIAKIRK 312
>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId:
9606]}
Length = 293
Score = 100 bits (248), Expect = 6e-25
Identities = 63/304 (20%), Positives = 109/304 (35%), Gaps = 52/304 (17%)
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--------------------PLAIKLHTP 100
P +R+N KT K+ G P +
Sbjct: 3 PRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQ 62
Query: 101 ISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHL--LEIADIKL 158
+ + P + G +QD A+ L A LLD G +V+DAC+APG KT HL L K+
Sbjct: 63 TDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKI 122
Query: 159 ISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFD 218
+ D + RL ++ L R + + + D + + R+++
Sbjct: 123 FAFDLDAKRLASMATLLARAGVSCCELAEE-----------DFLAVSPSDPRYHE---VH 168
Query: 219 RILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKP-GGKLLFVTCS 277
IL D C+GSG+ R + P + ++ + + + P +L++ TCS
Sbjct: 169 YILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPSLQRLVYSTCS 228
Query: 278 LWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNK---------------KQDYDGFFYS 322
L EE+E+ + + + RL P GFF +
Sbjct: 229 LCQEENEDVVRDALQQNPGAFRLAPALPAWPHRGLSTFPGAEHCLRASPETTLSSGFFVA 288
Query: 323 LFQK 326
+ ++
Sbjct: 289 VIER 292
>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle
and C-terminal domains {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 324
Score = 63.4 bits (153), Expect = 5e-12
Identities = 32/198 (16%), Positives = 62/198 (31%), Gaps = 27/198 (13%)
Query: 92 PLAIKLHTPISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLL 151
I+ I + GF Q + + G VLD + GG H
Sbjct: 107 RTIIQEGRAKFIVDMRGQKTGFFLDQRENRLALEKWV--QPGDRVLDVFTYTGGFAIHAA 164
Query: 152 EIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRF 211
++I +D + + EN K ++ + +I +
Sbjct: 165 IAGADEVIGIDKSPRAIETAKENAKLNGVEDRMK------------FIVGSAFEEMEKLQ 212
Query: 212 YKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKL 271
K + FD ++ D P + + D+K + + ++K GG L
Sbjct: 213 KKGEKFDIVVLDPPAFV-------------QHEKDLKAGLRAYFNVNFAGLNLVKDGGIL 259
Query: 272 LFVTCSLWFEESEEQAII 289
+ +CS + + +I
Sbjct: 260 VTCSCSQHVDLQMFKDMI 277
>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle
and C-terminal domains {Thermus thermophilus [TaxId:
274]}
Length = 318
Score = 53.7 bits (128), Expect = 7e-09
Identities = 32/158 (20%), Positives = 54/158 (34%), Gaps = 27/158 (17%)
Query: 132 SGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISK 191
G LD S GG HL ++VD++ L EN +
Sbjct: 145 RGERALDVFSYAGGFALHLALGFREV-VAVDSSAEALRRAEENARLNG-----------L 192
Query: 192 INLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLS 251
N++ L + + + FD ++ D P G K D+++
Sbjct: 193 GNVRVLEANAFDLLRRLEKEGE--RFDLVVLDPPAFAKG-------------KKDVERAY 237
Query: 252 KYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAII 289
+ ++ K+LK GG L +CS E A++
Sbjct: 238 RAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMV 275
>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 324
Score = 52.1 bits (124), Expect = 3e-08
Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 34/164 (20%)
Query: 116 IQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA--DIKLISVDNNLSRLNMISE 173
+ ++DI G VL+A S GG + L + ++IS + ++ +
Sbjct: 82 TFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKK 141
Query: 174 NLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVR 233
N K L + N+ ++ DI+ T + K+ FD + D+
Sbjct: 142 NYKHWRDSWKLSHVEEWPDNVDFIHKDISGATED----IKSLTFDAVALDMLN------- 190
Query: 234 RNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLL-FVTC 276
P L + LK GG +V
Sbjct: 191 -----PH---------------VTLPVFYPHLKHGGVCAVYVVN 214
>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 201
Score = 46.8 bits (110), Expect = 8e-07
Identities = 35/193 (18%), Positives = 72/193 (37%), Gaps = 36/193 (18%)
Query: 101 ISISKIPKFFNGFCSIQ------DAAAQLA--APLLDIRSGMYVLDACSAPGGKTCHLLE 152
I++SK+ F N ++ +AA++L A L G V D + G + L
Sbjct: 7 IALSKLKGFKNPKVWLEQYRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALL 66
Query: 153 IADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFY 212
+ ++I V+ + ++++ ENL K + + D+S+ N +
Sbjct: 67 LGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSR----------------- 109
Query: 213 KNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLW----KMLKPG 268
D ++ + P G R++ D P+L + +I + + K
Sbjct: 110 ----VDIVIMNPPF---GSQRKHADRPFLLKAFEISDVVYSIHLAKPEVRRFIEKFSWEH 162
Query: 269 GKLLFVTCSLWFE 281
G ++ + E
Sbjct: 163 GFVVTHRLTTKIE 175
>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle
and C-terminal domains {Streptococcus mutans [TaxId:
1309]}
Length = 317
Score = 44.8 bits (105), Expect = 6e-06
Identities = 28/174 (16%), Positives = 55/174 (31%), Gaps = 24/174 (13%)
Query: 133 GMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKI 192
G VL+ S + + SVD + + + +L
Sbjct: 145 GKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHL---------DMA 195
Query: 193 NLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSK 252
N + + +D+ R + +D I+ D P + R K ++ +SK
Sbjct: 196 NHQLVVMDVFDYFKYARR--HHLTYDIIIIDPPS-------------FARNKKEVFSVSK 240
Query: 253 YSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQL 306
K++ ++L G ++ T + S+ + I K QL
Sbjct: 241 DYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHTYLDLQQL 294
>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 209
Score = 41.2 bits (96), Expect = 5e-05
Identities = 26/151 (17%), Positives = 52/151 (34%), Gaps = 2/151 (1%)
Query: 117 QDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENL 175
+ AA L L +R VL +A G HL +I + + +V+ + + E +
Sbjct: 41 KLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELV 100
Query: 176 KRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRN 235
+ N +L D SK ++ + A+ G V
Sbjct: 101 RERN-NIIPLLFDASKPWKYSGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIM 159
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLK 266
+ + +++ K K + +K++K
Sbjct: 160 VKARSIDSTAEPEEVFKSVLKEMEGDFKIVK 190
>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 227
Score = 37.8 bits (87), Expect = 8e-04
Identities = 29/184 (15%), Positives = 53/184 (28%), Gaps = 42/184 (22%)
Query: 110 FNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA--DIKLISVDNNLSR 167
+N S AA I+ G VL A G H+ +I + K+ ++ +
Sbjct: 51 WNPNRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRV 110
Query: 168 LNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCT 227
L + ++ IL D +K + + D I D+
Sbjct: 111 LRELVPIVEERR-NIVPILGDATKPEEYRALVPK---------------VDVIFEDVAQP 154
Query: 228 GSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQA 287
+++N LK GG + S + ++E
Sbjct: 155 TQAK------------------------ILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPE 190
Query: 288 IIFS 291
+F
Sbjct: 191 QVFR 194
>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 309
Score = 36.7 bits (84), Expect = 0.003
Identities = 27/165 (16%), Positives = 49/165 (29%), Gaps = 24/165 (14%)
Query: 113 FCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMIS 172
F L + + VL+ G + A ++ VD + +
Sbjct: 113 FPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAA-AGAEVTHVDASKKAIGWAK 171
Query: 173 ENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVV 232
EN L+ I + + K R + +D IL D P G G
Sbjct: 172 ENQVLAGLEQAPI----------RWICEDAMKFIQREERRGST-YDIILTDPPKFGRG-- 218
Query: 233 RRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277
++ +L + +L+ ++L P L +T
Sbjct: 219 ----------THGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 253
>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase
domain {Thermus thermophilus [TaxId: 274]}
Length = 182
Score = 34.3 bits (78), Expect = 0.009
Identities = 27/183 (14%), Positives = 60/183 (32%), Gaps = 35/183 (19%)
Query: 127 LLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLIL 186
LL +R G +DA G +LE ++I +D + +
Sbjct: 13 LLAVRPGGVYVDATLGGAGHARGILERGG-RVIGLDQDPEAVAR---------------- 55
Query: 187 SDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKND 246
+ + + + + D ILADL + + + ++
Sbjct: 56 AKGLHLPGLTVVQGNFRHLKRHLAALGVERVDGILADLGVSSFHLDDPSDELN------- 108
Query: 247 IKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQL 306
+ L ++L PGG+L+ + S E ++ + +++ + L
Sbjct: 109 ------ALKEFLEQAAEVLAPGGRLVVIAF-----HSLEDRVVKRFLRESGLKVLTKKPL 157
Query: 307 LPT 309
+P+
Sbjct: 158 VPS 160
>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 264
Score = 32.7 bits (74), Expect = 0.041
Identities = 25/153 (16%), Positives = 45/153 (29%), Gaps = 43/153 (28%)
Query: 127 LLDIRSGMYVLDACSAPGGKTCHLLEI--ADIKLISVDNNLSRLNMISENLKRLNLKATL 184
DI G VL+A + G T LL ++IS + N+
Sbjct: 91 EGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCY----- 145
Query: 185 ILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRK 244
N + + D+ + DR + D+ PW
Sbjct: 146 ---GQPPDNWRLVVSDL------ADSELPDGSVDRAVLDMLA------------PW---- 180
Query: 245 NDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277
++L+ + ++L GG L+ +
Sbjct: 181 -----------EVLDAVSRLLVAGGVLMVYVAT 202
>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852
{Thermoplasma acidophilum [TaxId: 2303]}
Length = 250
Score = 32.3 bits (73), Expect = 0.049
Identities = 25/163 (15%), Positives = 50/163 (30%), Gaps = 48/163 (29%)
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEI--ADIKLISVDNNLSRLNMISENL 175
DA+ + +R GM +L+ G + ++L L V+ + L +NL
Sbjct: 73 DASYIIM--RCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNL 130
Query: 176 KRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRN 235
++ ++ F ++ +D ++AD+P
Sbjct: 131 SEFYD-----------------IGNVRTSRSDIADFISDQMYDAVIADIPD--------- 164
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSL 278
PW + + M+KPG F +
Sbjct: 165 ---PW---------------NHVQKIASMMKPGSVATFYLPNF 189
>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 197
Score = 31.6 bits (71), Expect = 0.071
Identities = 16/104 (15%), Positives = 36/104 (34%), Gaps = 4/104 (3%)
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRL 178
A + G V+DA + G C + + + D + + N +
Sbjct: 35 AYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGV 94
Query: 179 NLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILA 222
N +++D+S+I+ K +N + + + D+
Sbjct: 95 N----FMVADVSEISGKYDTWIMNPPFGSVVKHSDRAFIDKAFE 134
>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase
domain {Thermotoga maritima [TaxId: 2336]}
Length = 192
Score = 31.7 bits (71), Expect = 0.072
Identities = 27/151 (17%), Positives = 52/151 (34%), Gaps = 27/151 (17%)
Query: 127 LLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKRLNLKATLI 185
L +LD GG + +LE ++I +D + L + E LK + + +L
Sbjct: 18 FLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLF 77
Query: 186 LSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKN 245
+ + + I K D IL DL + + R+
Sbjct: 78 KVSYREADFLLKTLGIEK-------------VDGILMDLGVS-------TYQLKGENREL 117
Query: 246 DIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276
+ + L +L PGG+++ ++
Sbjct: 118 ------ENLKEFLKKAEDLLNPGGRIVVISF 142
>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB
{Salmonella typhimurium [TaxId: 90371]}
Length = 198
Score = 29.6 bits (65), Expect = 0.41
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 255 CKILNNLWKMLKPGGKLLFVT 275
++ N+ + KPGG L V
Sbjct: 114 PGLIANMQRCTKPGGYNLIVA 134
>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 229
Score = 29.3 bits (64), Expect = 0.59
Identities = 23/151 (15%), Positives = 40/151 (26%), Gaps = 33/151 (21%)
Query: 131 RSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDIS 190
G VL+ + E + ++ N + + R K +
Sbjct: 52 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLW- 110
Query: 191 KINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL 250
+ + +FD IL D S
Sbjct: 111 ---------------EDVAPTLPDGHFDGILYD-TYPLSEETWHTHQFN----------- 143
Query: 251 SKYSCKILNNLWKMLKPGGKLLFVTCSLWFE 281
I N+ +++LKPGG L + + W E
Sbjct: 144 -----FIKNHAFRLLKPGGVLTYCNLTSWGE 169
>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 251
Score = 28.9 bits (63), Expect = 0.66
Identities = 9/58 (15%), Positives = 25/58 (43%)
Query: 255 CKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNK 312
K+ + + + LKPGG + ++ + + + ++ + + ++ P V K
Sbjct: 125 RKLFSKVAEALKPGGVFITDFPCWFYGGRDGPVVWNEQKGEEKLVIMDWREVEPAVQK 182
>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 280
Score = 28.8 bits (63), Expect = 0.74
Identities = 18/162 (11%), Positives = 46/162 (28%), Gaps = 23/162 (14%)
Query: 116 IQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENL 175
+ + + D +S + +L G +L + V N + +E +
Sbjct: 24 MDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQI 83
Query: 176 KRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRN 235
+ +S++ + ++ + + + +D I ++
Sbjct: 84 AKYKELVA-KISNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHM------IQMLYYV 136
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277
DIP + +L K+L + S
Sbjct: 137 KDIPATLK----------------FFHSLLGTNAKMLIIVVS 162
>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas
syringae [TaxId: 317]}
Length = 201
Score = 27.8 bits (60), Expect = 1.4
Identities = 13/173 (7%), Positives = 37/173 (21%), Gaps = 25/173 (14%)
Query: 126 PLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLI 185
L++ G VL L ++ + + + + +
Sbjct: 14 SSLNVVPGARVLVPLCGKSQDMSWLSG-QGYHVVGAELSEAAVERYFTERGEQPHITSQG 72
Query: 186 LSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKN 245
+ +++ R + ++DR +R +
Sbjct: 73 DFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALP------------ADMRERY 120
Query: 246 DIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSI 298
+L ++ L +T E + +
Sbjct: 121 V------------QHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRV 161
>d1sqga1 a.79.1.3 (A:5-144) Ribosomal RNA small subunit
methyltransferase B, RsmB (Sun, Fmu/Fmv), N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 140
Score = 26.6 bits (58), Expect = 2.4
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 1 MINAILREFLRKKGEIFKS 19
+IN +LR+F R++ E+
Sbjct: 113 LINGVLRQFQRQQEELLAE 131
>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
methyltransferase Dot1l {Human (Homo sapiens) [TaxId:
9606]}
Length = 328
Score = 27.1 bits (59), Expect = 2.7
Identities = 10/147 (6%), Positives = 31/147 (21%), Gaps = 30/147 (20%)
Query: 127 LLDIRSGMYVLDACSAPGGKTCHL-LEIADIKLISVDNNLSRLNMISENLKRLNLKATLI 185
+ + +D S G + V+ +
Sbjct: 146 EIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWM--- 202
Query: 186 LSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKN 245
++ K+ + D N + ++
Sbjct: 203 ----------------------KWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFA 240
Query: 246 DIKKLSKYSCKILNNLWKMLKPGGKLL 272
++ + + +K GG+++
Sbjct: 241 FGPEVDHQLKER----FANMKEGGRIV 263
>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 222
Score = 27.2 bits (59), Expect = 2.7
Identities = 11/47 (23%), Positives = 20/47 (42%)
Query: 151 LEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKL 197
+ AD L++ + + E L R+N +A + I+L L
Sbjct: 148 VGYADRILLTKTDVAGEAEKLHERLARINARAPVYTVTHGDIDLGLL 194
>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 292
Score = 27.2 bits (59), Expect = 2.9
Identities = 26/149 (17%), Positives = 43/149 (28%), Gaps = 25/149 (16%)
Query: 127 LLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLIL 186
LL VLD G + L+E + SVD + L + +
Sbjct: 51 LLRQHGCHRVLDVACGTGVDSIMLVE-EGFSVTSVDASDKMLKYALKERWNRRKEPAFDK 109
Query: 187 SDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKND 246
I + N L D+ + + I PD + ++
Sbjct: 110 WVIEEANWLTLDKDV---------PAGDGFDAVICL------GNSFAHLPDSKGDQSEHR 154
Query: 247 IKKLSKYSCKILNNLWKMLKPGGKLLFVT 275
L N+ M++PGG L+
Sbjct: 155 ---------LALKNIASMVRPGGLLVIDH 174
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus
cereus [TaxId: 1396]}
Length = 281
Score = 26.8 bits (58), Expect = 3.7
Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 256 KILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQD 315
+L + +K GGK++ W ++ + + I+L +L + ++
Sbjct: 112 TMLQKMIHSVKKGGKIICFE-PHWISNM-ASYLLDGEKQSEFIQLGVLQKLFESDTQRNG 169
Query: 316 YDGF 319
DG
Sbjct: 170 KDGN 173
>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 280
Score = 26.8 bits (58), Expect = 4.0
Identities = 14/61 (22%), Positives = 25/61 (40%)
Query: 117 QDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLK 176
Q A L LD++ GM +LD G +E D+ +I + + ++ + L
Sbjct: 37 QYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLA 96
Query: 177 R 177
Sbjct: 97 S 97
>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine
N-methyltransferase, PNMTase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 263
Score = 26.7 bits (58), Expect = 4.3
Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 15/86 (17%)
Query: 255 CKILNNLWKMLKPGGKLLFVTC--------------SLWFEESEEQAIIFSKNHKDSIRL 300
+ L+++ +L+PGG LL + + E E + ++ L
Sbjct: 178 QRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVRE-ALVRSGYKVRDL 236
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQK 326
+ D G F++ QK
Sbjct: 237 RTYIMPAHLQTGVDDVKGVFFAWAQK 262
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus
halodurans [TaxId: 86665]}
Length = 231
Score = 26.1 bits (56), Expect = 4.9
Identities = 19/151 (12%), Positives = 38/151 (25%), Gaps = 40/151 (26%)
Query: 127 LLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLIL 186
+ ++ VLD + G ++ K
Sbjct: 10 IAALKGNEEVLDVATGGGH-------------------------VANAFAPFVKKVVAF- 43
Query: 187 SDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKND 246
D+++ LK I + + + + D P
Sbjct: 44 -DLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPA---- 98
Query: 247 IKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277
++ +++LK GG+LL V S
Sbjct: 99 ---------SFVSEAYRVLKKGGQLLLVDNS 120
>d2hmfa1 c.73.1.3 (A:2-303) Aspartokinase {Methanococcus jannaschii
[TaxId: 2190]}
Length = 302
Score = 26.4 bits (57), Expect = 5.2
Identities = 15/66 (22%), Positives = 22/66 (33%)
Query: 136 VLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLK 195
V+ SA T L+EI+ L D + K I S+ K +K
Sbjct: 34 VVVVVSAMSEVTNALVEISQQALDVRDIAKVGDFIKFIREKHYKAIEEAIKSEEIKEEVK 93
Query: 196 KLYIDI 201
K+
Sbjct: 94 KIIDSR 99
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis
[TaxId: 1423]}
Length = 234
Score = 26.1 bits (56), Expect = 6.0
Identities = 9/42 (21%), Positives = 13/42 (30%), Gaps = 1/42 (2%)
Query: 123 LAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNN 164
L + R+ VLD + G + I VD
Sbjct: 7 LMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDAT 47
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.139 0.423
Gapped
Lambda K H
0.267 0.0603 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,285,266
Number of extensions: 61507
Number of successful extensions: 269
Number of sequences better than 10.0: 1
Number of HSP's gapped: 257
Number of HSP's successfully gapped: 49
Length of query: 329
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 243
Effective length of database: 1,226,816
Effective search space: 298116288
Effective search space used: 298116288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.5 bits)