BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15213
(139 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|445494814|ref|ZP_21461858.1| ribosomal RNA small subunit methyltransferase B [Janthinobacterium
sp. HH01]
gi|444790975|gb|ELX12522.1| ribosomal RNA small subunit methyltransferase B [Janthinobacterium
sp. HH01]
Length = 467
Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats.
Identities = 72/116 (62%), Positives = 91/116 (78%), Gaps = 1/116 (0%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ K FDRILAD+PCT SG+VRR+PDI WLRRK D +L+ S KIL+NLW+ML PGGK
Sbjct: 351 WWDGKLFDRILADVPCTASGIVRRHPDIRWLRRKGDTLQLATLSSKILDNLWQMLAPGGK 410
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
LLFVTCSLW +ESE QA F+ ++ ++RL++PGQLLP QD+DG FY+LFQK
Sbjct: 411 LLFVTCSLWPQESEAQAAAFAVRNQ-AVRLDAPGQLLPAGGAGQDHDGLFYALFQK 465
>gi|399021791|ref|ZP_10723882.1| ribosomal RNA small subunit methyltransferase RsmB [Herbaspirillum
sp. CF444]
gi|398090570|gb|EJL81038.1| ribosomal RNA small subunit methyltransferase RsmB [Herbaspirillum
sp. CF444]
Length = 438
Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats.
Identities = 70/116 (60%), Positives = 93/116 (80%), Gaps = 1/116 (0%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ K FDRILAD+PCT SG+VRR+PDI WLRRK D +L+ S +IL+NLW+MLKP GK
Sbjct: 321 WWDGKQFDRILADVPCTASGIVRRHPDIRWLRRKTDTTQLATLSSQILDNLWQMLKPDGK 380
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
LL VTCSLW +ESE+QA F++ ++ ++RL +PGQLLPT + + D+DG FY+LFQK
Sbjct: 381 LLLVTCSLWPQESEDQAAAFAQRNQ-AVRLPAPGQLLPTASAETDHDGLFYALFQK 435
>gi|300309418|ref|YP_003773510.1| RNA methyltransferase [Herbaspirillum seropedicae SmR1]
gi|300072203|gb|ADJ61602.1| RNA methyltransferase (SUN protein) protein [Herbaspirillum
seropedicae SmR1]
Length = 424
Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats.
Identities = 69/116 (59%), Positives = 93/116 (80%), Gaps = 1/116 (0%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRILAD+PCT SG+VRR+PDI WLRRK D +L+ S +IL+ LW+ML+P GK
Sbjct: 307 WWDGQPFDRILADVPCTASGIVRRHPDIRWLRRKTDTAQLATLSTQILDKLWQMLRPDGK 366
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
LL VTCSLW +ESE+QA+ F++ H ++IRL +PGQLLPT ++ D+DG FY+LFQK
Sbjct: 367 LLLVTCSLWPQESEQQAVAFAQKH-NAIRLPAPGQLLPTASETADHDGLFYALFQK 421
>gi|152981119|ref|YP_001351848.1| tRNA and rRNA cytosine-C5-methylases [Janthinobacterium sp.
Marseille]
gi|151281196|gb|ABR89606.1| tRNA and rRNA cytosine-C5-methylases [Janthinobacterium sp.
Marseille]
Length = 437
Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats.
Identities = 71/116 (61%), Positives = 90/116 (77%), Gaps = 1/116 (0%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ K FDRILAD+PCT SG+VRR+PDI WLRRK D +L+ S IL+NLW+ML+P GK
Sbjct: 320 WWDGKPFDRILADVPCTASGIVRRHPDIRWLRRKGDTTQLAAISATILDNLWQMLQPDGK 379
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
LLFVTCSLW +ESE QA F+ + ++ RL +PGQLLPT N + D+DG FY+LFQK
Sbjct: 380 LLFVTCSLWPQESEAQAAAFAVRN-NATRLPAPGQLLPTANAESDHDGLFYALFQK 434
>gi|395760186|ref|ZP_10440855.1| tRNA and rRNA cytosine-C5-methylases [Janthinobacterium lividum
PAMC 25724]
Length = 475
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 70/116 (60%), Positives = 92/116 (79%), Gaps = 1/116 (0%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + +DRILAD+PCT SG+VRR+PDI WLRRK D +L+ S KIL+NLW+ML+P GK
Sbjct: 358 WWDGQQYDRILADVPCTASGIVRRHPDIRWLRRKGDAFQLATLSAKILDNLWQMLRPDGK 417
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
LLFVTCSLW +ESE QA F+ + ++ RL +PGQLLPT + +QD+DG FY+LFQK
Sbjct: 418 LLFVTCSLWPQESEAQAAAFAVRN-NATRLTAPGQLLPTGSAEQDHDGLFYALFQK 472
>gi|409408653|ref|ZP_11257088.1| RNA methyltransferase [Herbaspirillum sp. GW103]
gi|386431975|gb|EIJ44803.1| RNA methyltransferase [Herbaspirillum sp. GW103]
Length = 439
Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats.
Identities = 71/117 (60%), Positives = 91/117 (77%), Gaps = 3/117 (2%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + +DRILAD+PCT SG+VRR+PDI WLRRK D +L+ S +IL+ LW+ML+P GK
Sbjct: 322 WWDGQGYDRILADVPCTASGIVRRHPDIRWLRRKTDTVQLATLSAQILDKLWQMLRPDGK 381
Query: 81 LLFVTCSLWFEESEEQAIIFS-KNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
LL VTCSLW +ESE+QAI F+ KNH +IRL +PGQLLPT D+DG FY+LFQK
Sbjct: 382 LLLVTCSLWPQESEQQAIAFAQKNH--AIRLPAPGQLLPTARADADHDGLFYALFQK 436
>gi|193222202|emb|CAL60368.2| putative 16S rRNA methyltransferase B [Herminiimonas
arsenicoxydans]
Length = 453
Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats.
Identities = 70/116 (60%), Positives = 92/116 (79%), Gaps = 1/116 (0%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ K F+RILAD+PCT SG+VRR+PDI WLRRK+D +L+ S +IL+NLW+ML+ GK
Sbjct: 336 WWDGKPFERILADVPCTASGIVRRHPDIRWLRRKSDAVQLAAISAQILDNLWQMLQADGK 395
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
LLFVTCSLW +ESE QA F+ ++ +IRL +PGQLLPT N + D+DG FY+LFQK
Sbjct: 396 LLFVTCSLWPQESEAQAAAFAVRNR-AIRLPAPGQLLPTANAEDDHDGLFYALFQK 450
>gi|134093422|ref|YP_001098497.1| S-adenosyl-L-methionine-dependent RNA methyltransferase
[Herminiimonas arsenicoxydans]
Length = 449
Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats.
Identities = 70/116 (60%), Positives = 92/116 (79%), Gaps = 1/116 (0%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ K F+RILAD+PCT SG+VRR+PDI WLRRK+D +L+ S +IL+NLW+ML+ GK
Sbjct: 332 WWDGKPFERILADVPCTASGIVRRHPDIRWLRRKSDAVQLAAISAQILDNLWQMLQADGK 391
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
LLFVTCSLW +ESE QA F+ ++ +IRL +PGQLLPT N + D+DG FY+LFQK
Sbjct: 392 LLFVTCSLWPQESEAQAAAFAVRNR-AIRLPAPGQLLPTANAEDDHDGLFYALFQK 446
>gi|237746959|ref|ZP_04577439.1| tRNA and rRNA cytosine-C5-methylase [Oxalobacter formigenes HOxBLS]
gi|229378310|gb|EEO28401.1| tRNA and rRNA cytosine-C5-methylase [Oxalobacter formigenes HOxBLS]
Length = 441
Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats.
Identities = 71/128 (55%), Positives = 91/128 (71%), Gaps = 1/128 (0%)
Query: 9 SDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKIL 68
+DI R ++ FD ILAD+PCT SG++RR+PDI WLRR++D +LS S +IL
Sbjct: 314 ADIKTGDATRSDWWDKSLFDCILADVPCTASGIIRRHPDIRWLRRQSDSHELSLVSARIL 373
Query: 69 NNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDG 128
NLW MLKPGGKLL TCS+W EESE QA F+ + ++RL +PGQLLPTVN D+DG
Sbjct: 374 KNLWPMLKPGGKLLLATCSIWPEESERQAEAFAA-YSGALRLPAPGQLLPTVNGMNDHDG 432
Query: 129 FFYSLFQK 136
FY+LF+K
Sbjct: 433 LFYALFKK 440
>gi|427402481|ref|ZP_18893478.1| ribosomal RNA small subunit methyltransferase B [Massilia timonae
CCUG 45783]
gi|425718287|gb|EKU81234.1| ribosomal RNA small subunit methyltransferase B [Massilia timonae
CCUG 45783]
Length = 553
Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 71/117 (60%), Positives = 92/117 (78%), Gaps = 1/117 (0%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + +DRILAD+PCT SG+VRR+PDI WLRRK+D +L+ S KIL+NLW+ML P GK
Sbjct: 436 WWDGRQYDRILADVPCTASGIVRRHPDIRWLRRKSDTSQLATLSSKILDNLWQMLLPDGK 495
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
LLFVTCSLW +ESE QA F+ H D++RL++PGQLLP QD+DG FY+LFQK+
Sbjct: 496 LLFVTCSLWPQESEAQAAAFAARH-DAVRLDAPGQLLPLGGAGQDHDGLFYALFQKK 551
>gi|398836142|ref|ZP_10593489.1| ribosomal RNA small subunit methyltransferase RsmB [Herbaspirillum
sp. YR522]
gi|398213700|gb|EJN00292.1| ribosomal RNA small subunit methyltransferase RsmB [Herbaspirillum
sp. YR522]
Length = 445
Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats.
Identities = 66/116 (56%), Positives = 93/116 (80%), Gaps = 1/116 (0%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ +++DRILAD+PCT SG+VRR+PDI WLRRK D ++L+ S +IL+NLW+ML+P GK
Sbjct: 328 WWDGRHYDRILADVPCTASGIVRRHPDIRWLRRKTDAEQLATLSAQILDNLWQMLRPDGK 387
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
LL VTCSLW ES++QA F++ + ++ RL +PGQLLPT + + D+DG FY+LFQK
Sbjct: 388 LLLVTCSLWPLESQQQADAFAQRN-NATRLPAPGQLLPTASAETDHDGLFYALFQK 442
>gi|329910997|ref|ZP_08275426.1| Ribosomal RNA small subunit methyltransferase B [Oxalobacteraceae
bacterium IMCC9480]
gi|327546013|gb|EGF31091.1| Ribosomal RNA small subunit methyltransferase B [Oxalobacteraceae
bacterium IMCC9480]
Length = 437
Score = 152 bits (383), Expect = 6e-35, Method: Composition-based stats.
Identities = 70/136 (51%), Positives = 95/136 (69%), Gaps = 11/136 (8%)
Query: 1 MIAGEIESSDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL 60
++AG+ ++D ++ K FDRILAD+PCT SG++RR+PDI WLRRK D +L
Sbjct: 310 LVAGDAAATD----------WWDGKPFDRILADVPCTASGILRRHPDIRWLRRKADTAQL 359
Query: 61 SKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTV 120
+ S +IL+NLW+ML P GKLLFVTCSLW +ESE QA F+ ++ RL +PGQLLP
Sbjct: 360 AALSSRILDNLWRMLAPDGKLLFVTCSLWPQESEAQAAAFAMRNQAE-RLPAPGQLLPMA 418
Query: 121 NKKQDYDGFFYSLFQK 136
+D+DG FY+LF+K
Sbjct: 419 TSNEDHDGLFYALFRK 434
>gi|340785767|ref|YP_004751232.1| ribosomal RNA small subunit methyltransferase B [Collimonas
fungivorans Ter331]
gi|340551034|gb|AEK60409.1| Ribosomal RNA small subunit methyltransferase B [Collimonas
fungivorans Ter331]
Length = 436
Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats.
Identities = 67/116 (57%), Positives = 88/116 (75%), Gaps = 1/116 (0%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRILAD+PCT SG+VRR+PDI WLRRK D ++L+ S KIL+NLW+ML+P GK
Sbjct: 321 WWDGQLFDRILADVPCTASGIVRRHPDIRWLRRKTDTEQLATLSAKILDNLWQMLRPDGK 380
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
LL VTCS+W +ESE QA ++ RL +PGQLLPT + + D+DG FY+LFQK
Sbjct: 381 LLLVTCSVWPQESEAQAAA-FAARNNARRLPAPGQLLPTADAQHDHDGLFYALFQK 435
>gi|307728146|ref|YP_003905370.1| sun protein [Burkholderia sp. CCGE1003]
gi|307582681|gb|ADN56079.1| sun protein [Burkholderia sp. CCGE1003]
Length = 479
Score = 141 bits (356), Expect = 7e-32, Method: Composition-based stats.
Identities = 66/132 (50%), Positives = 87/132 (65%), Gaps = 21/132 (15%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRILAD+PC+ SG+VRR+PDI WLRR +DI L +IL LW ++KPGG+LL+VTC
Sbjct: 348 FDRILADVPCSASGIVRRHPDIRWLRRASDIPALVDEQRRILGALWPLVKPGGELLYVTC 407
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNK---------------------KQD 125
S++ EE E QA F NH+D++RL++PGQLLP+V + D
Sbjct: 408 SIFPEEGELQAQWFGNNHQDAVRLDAPGQLLPSVARAPADTSAGSHAGGFADTSAGANSD 467
Query: 126 YDGFFYSLFQKR 137
+DGFFY+ FQKR
Sbjct: 468 HDGFFYARFQKR 479
>gi|295675129|ref|YP_003603653.1| sun protein [Burkholderia sp. CCGE1002]
gi|295434972|gb|ADG14142.1| sun protein [Burkholderia sp. CCGE1002]
Length = 479
Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats.
Identities = 65/132 (49%), Positives = 88/132 (66%), Gaps = 21/132 (15%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRILAD+PC+ SG+VRR+PDI WLRR++DI L +IL+ LW ++KPGG+LL+VTC
Sbjct: 348 FDRILADVPCSASGIVRRHPDIRWLRRQSDIAALVSEQRRILDALWPLVKPGGELLYVTC 407
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNK---------------------KQD 125
S++ EE E QA F H+D++RL++PGQLLP+V + D
Sbjct: 408 SIFPEEGELQAQWFGNQHQDAVRLDAPGQLLPSVARAPADSSAGSHAGRPAEFSTGTNSD 467
Query: 126 YDGFFYSLFQKR 137
+DGFFY+ FQKR
Sbjct: 468 HDGFFYARFQKR 479
>gi|323524427|ref|YP_004226580.1| sun protein [Burkholderia sp. CCGE1001]
gi|323381429|gb|ADX53520.1| sun protein [Burkholderia sp. CCGE1001]
Length = 479
Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 65/132 (49%), Positives = 88/132 (66%), Gaps = 21/132 (15%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRILAD+PC+ SG+VRR+PDI WLRR +DI L + +IL+ LW ++KPGG+LL+VTC
Sbjct: 348 FDRILADVPCSASGIVRRHPDIRWLRRASDIPALVEAQRRILDALWPLVKPGGELLYVTC 407
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNK---------------------KQD 125
S++ EE E QA F H+D++RL++PGQLLP+V + D
Sbjct: 408 SIFPEEGELQAQWFGNKHQDAVRLDAPGQLLPSVARAPADPSAGSHAGEFAERSAGTNSD 467
Query: 126 YDGFFYSLFQKR 137
+DGFFY+ FQKR
Sbjct: 468 HDGFFYARFQKR 479
>gi|407711817|ref|YP_006832382.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
phenoliruptrix BR3459a]
gi|407234001|gb|AFT84200.1| Ribosomal RNA small subunit methyltransferase B [Burkholderia
phenoliruptrix BR3459a]
Length = 457
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 65/132 (49%), Positives = 88/132 (66%), Gaps = 21/132 (15%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRILAD+PC+ SG+VRR+PDI WLRR +DI L + +IL+ LW ++KPGG+LL+VTC
Sbjct: 326 FDRILADVPCSASGIVRRHPDIRWLRRASDIPALVEEQRRILDALWPLVKPGGELLYVTC 385
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNK---------------------KQD 125
S++ EE E QA F H+D++RL++PGQLLP+V + D
Sbjct: 386 SIFPEEGELQAQWFGNKHQDAVRLDAPGQLLPSVARAPADPSAGSHAGEFAEPSAGTNSD 445
Query: 126 YDGFFYSLFQKR 137
+DGFFY+ FQKR
Sbjct: 446 HDGFFYARFQKR 457
>gi|209515830|ref|ZP_03264692.1| sun protein [Burkholderia sp. H160]
gi|209503678|gb|EEA03672.1| sun protein [Burkholderia sp. H160]
Length = 479
Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 65/132 (49%), Positives = 87/132 (65%), Gaps = 21/132 (15%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRILAD+PC+ SG+VRR+PDI WLRR++DI L +IL+ LW ++KPGG LL+VTC
Sbjct: 348 FDRILADVPCSASGIVRRHPDIRWLRRQSDIAALVAEQRRILDALWPLVKPGGVLLYVTC 407
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNK---------------------KQD 125
S++ EE E QA F H+D++RL++PGQLLP+V + D
Sbjct: 408 SIFPEEGEMQAQWFGNQHQDAVRLDAPGQLLPSVARAPADPSAGSHAGQPTEFSAGANSD 467
Query: 126 YDGFFYSLFQKR 137
+DGFFY+ FQKR
Sbjct: 468 HDGFFYARFQKR 479
>gi|421865395|ref|ZP_16297073.1| Ribosomal RNA small subunit methyltransferase B [Burkholderia
cenocepacia H111]
gi|358074613|emb|CCE47951.1| Ribosomal RNA small subunit methyltransferase B [Burkholderia
cenocepacia H111]
Length = 463
Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats.
Identities = 64/127 (50%), Positives = 89/127 (70%), Gaps = 10/127 (7%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y + FDRILAD+PC+ SG+VRR+PDI WLRR+ DI L +IL+ LW ++KPGG+
Sbjct: 337 WYDGRPFDRILADVPCSASGIVRRHPDIRWLRREADIPALVAEQRRILSALWPLVKPGGE 396
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLP----------TVNKKQDYDGFF 130
LL+VTCS++ EE E QA F +D++RL++PGQLLP +++ D+DGFF
Sbjct: 397 LLYVTCSIFPEEGEGQARWFEAACEDAVRLDAPGQLLPGGVQGRAAAGALDQNTDHDGFF 456
Query: 131 YSLFQKR 137
Y+ FQKR
Sbjct: 457 YARFQKR 463
>gi|206558871|ref|YP_002229631.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
cenocepacia J2315]
gi|444360665|ref|ZP_21161852.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
cenocepacia BC7]
gi|444373420|ref|ZP_21172785.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
cenocepacia K56-2Valvano]
gi|198034908|emb|CAR50780.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
cenocepacia J2315]
gi|443591768|gb|ELT60634.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
cenocepacia K56-2Valvano]
gi|443599568|gb|ELT67833.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
cenocepacia BC7]
Length = 463
Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats.
Identities = 64/127 (50%), Positives = 89/127 (70%), Gaps = 10/127 (7%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y + FDRILAD+PC+ SG+VRR+PDI WLRR+ DI L +IL+ LW ++KPGG+
Sbjct: 337 WYDGRPFDRILADVPCSASGIVRRHPDIRWLRREADIPALVAEQRRILSALWPLVKPGGE 396
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLP----------TVNKKQDYDGFF 130
LL+VTCS++ EE E QA F +D++RL++PGQLLP +++ D+DGFF
Sbjct: 397 LLYVTCSIFPEEGEGQARWFEAACEDAVRLDAPGQLLPGGVQGRAAAGALDQNTDHDGFF 456
Query: 131 YSLFQKR 137
Y+ FQKR
Sbjct: 457 YARFQKR 463
>gi|172062101|ref|YP_001809753.1| sun protein [Burkholderia ambifaria MC40-6]
gi|171994618|gb|ACB65537.1| sun protein [Burkholderia ambifaria MC40-6]
Length = 462
Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats.
Identities = 64/126 (50%), Positives = 88/126 (69%), Gaps = 9/126 (7%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y + FDRILAD+PC+ SG+VRR+PDI WLRR+ DI L +IL LW ++KPGG+
Sbjct: 337 WYDGRPFDRILADVPCSASGIVRRHPDIRWLRREADIAALVAEQRRILTALWPLVKPGGE 396
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLP---------TVNKKQDYDGFFY 131
LL+VTCS++ EE E QA F +D++RL++PGQLLP +++ D+DGFFY
Sbjct: 397 LLYVTCSIFPEEGELQARWFEAACEDAVRLDAPGQLLPGGVPAVAAGALDQNTDHDGFFY 456
Query: 132 SLFQKR 137
+ FQKR
Sbjct: 457 ARFQKR 462
>gi|171319444|ref|ZP_02908549.1| sun protein [Burkholderia ambifaria MEX-5]
gi|171095336|gb|EDT40317.1| sun protein [Burkholderia ambifaria MEX-5]
Length = 462
Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats.
Identities = 64/126 (50%), Positives = 88/126 (69%), Gaps = 9/126 (7%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y + FDRILAD+PC+ SG+VRR+PDI WLRR+ DI L +IL LW ++KPGG+
Sbjct: 337 WYDGRPFDRILADVPCSASGIVRRHPDIRWLRREADIAALVAEQRRILTALWPLVKPGGE 396
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLP---------TVNKKQDYDGFFY 131
LL+VTCS++ EE E QA F +D++RL++PGQLLP +++ D+DGFFY
Sbjct: 397 LLYVTCSIFPEEGELQARWFEAACEDAVRLDAPGQLLPGGVHAGAAGALDQNTDHDGFFY 456
Query: 132 SLFQKR 137
+ FQKR
Sbjct: 457 ARFQKR 462
>gi|170734472|ref|YP_001766419.1| sun protein [Burkholderia cenocepacia MC0-3]
gi|169817714|gb|ACA92297.1| sun protein [Burkholderia cenocepacia MC0-3]
Length = 463
Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats.
Identities = 64/127 (50%), Positives = 89/127 (70%), Gaps = 10/127 (7%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y + FDRILAD+PC+ SG+VRR+PDI WLRR+ DI L +IL+ LW ++KPGG+
Sbjct: 337 WYDGRPFDRILADVPCSASGIVRRHPDIRWLRREADIPALVAEQRRILSALWPLVKPGGE 396
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLP----------TVNKKQDYDGFF 130
LL+VTCS++ EE E QA F +D++RL++PGQLLP +++ D+DGFF
Sbjct: 397 LLYVTCSIFPEEGELQARWFEAACEDAVRLDAPGQLLPGSVQGRAAAGALDQNTDHDGFF 456
Query: 131 YSLFQKR 137
Y+ FQKR
Sbjct: 457 YARFQKR 463
>gi|107024054|ref|YP_622381.1| sun protein [Burkholderia cenocepacia AU 1054]
gi|116691141|ref|YP_836764.1| sun protein [Burkholderia cenocepacia HI2424]
gi|105894243|gb|ABF77408.1| sun protein [Burkholderia cenocepacia AU 1054]
gi|116649230|gb|ABK09871.1| sun protein [Burkholderia cenocepacia HI2424]
Length = 463
Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats.
Identities = 64/127 (50%), Positives = 89/127 (70%), Gaps = 10/127 (7%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y + FDRILAD+PC+ SG+VRR+PDI WLRR+ DI L +IL+ LW ++KPGG+
Sbjct: 337 WYDGRPFDRILADVPCSASGIVRRHPDIRWLRREADIPALVAEQRRILSALWPLVKPGGE 396
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLP----------TVNKKQDYDGFF 130
LL+VTCS++ EE E QA F +D++RL++PGQLLP +++ D+DGFF
Sbjct: 397 LLYVTCSIFPEEGELQARWFEAACEDAVRLDAPGQLLPGSVQGRAAAGALDQNTDHDGFF 456
Query: 131 YSLFQKR 137
Y+ FQKR
Sbjct: 457 YARFQKR 463
>gi|78067943|ref|YP_370712.1| rRNA SAM-dependent methyltransferase [Burkholderia sp. 383]
gi|77968688|gb|ABB10068.1| Fmu, rRNA SAM-dependent methyltransferase [Burkholderia sp. 383]
Length = 463
Score = 139 bits (349), Expect = 5e-31, Method: Composition-based stats.
Identities = 64/127 (50%), Positives = 89/127 (70%), Gaps = 10/127 (7%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y + FDRILAD+PC+ SG+VRR+PDI WLRR+ DI L +IL+ LW ++KPGG+
Sbjct: 337 WYDGRPFDRILADVPCSASGIVRRHPDIRWLRREADIPALVAEQRRILSALWPLVKPGGE 396
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLP----------TVNKKQDYDGFF 130
LL+VTCS++ EE E QA F +D++RL++PGQLLP +++ D+DGFF
Sbjct: 397 LLYVTCSVFPEEGELQARWFEAACEDAVRLDAPGQLLPGGVQGGAAAGALDQNTDHDGFF 456
Query: 131 YSLFQKR 137
Y+ FQKR
Sbjct: 457 YAQFQKR 463
>gi|186474810|ref|YP_001856280.1| sun protein [Burkholderia phymatum STM815]
gi|184191269|gb|ACC69234.1| sun protein [Burkholderia phymatum STM815]
Length = 453
Score = 139 bits (349), Expect = 5e-31, Method: Composition-based stats.
Identities = 65/128 (50%), Positives = 85/128 (66%), Gaps = 17/128 (13%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRILAD+PC+ SG+VRR+PDI WLRR +DI L + +IL LW ++KPGG+LL+VTC
Sbjct: 326 FDRILADVPCSASGIVRRHPDIRWLRRASDIPVLVEEQRRILEALWTLVKPGGELLYVTC 385
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQ-----------------DYDGF 129
S++ EE E QA F H D++RL++PGQLLP V + D+DGF
Sbjct: 386 SIFPEEGELQAQWFGNRHADAVRLDAPGQLLPAVARAPADVSAGSRAGQSTGSSLDHDGF 445
Query: 130 FYSLFQKR 137
FY+ FQKR
Sbjct: 446 FYARFQKR 453
>gi|430804747|ref|ZP_19431862.1| tRNA and rRNA cytosine-C5-methylase [Cupriavidus sp. HMR-1]
gi|429503067|gb|ELA01369.1| tRNA and rRNA cytosine-C5-methylase [Cupriavidus sp. HMR-1]
Length = 457
Score = 138 bits (348), Expect = 6e-31, Method: Composition-based stats.
Identities = 63/131 (48%), Positives = 88/131 (67%), Gaps = 14/131 (10%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRILAD+PC+ SG+VRR+PDI WLRR++DI KL +I++ LW +LKPGG
Sbjct: 326 WWDGQQFDRILADVPCSASGIVRRHPDIRWLRRESDIAKLVNEQRRIVSQLWSLLKPGGI 385
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQ--------------DY 126
L++VTCS++ E EEQA+ F D+IRL +PGQLLP ++ D+
Sbjct: 386 LVYVTCSIFPTEGEEQALWFGAQLPDAIRLQAPGQLLPGTKAQETAGTDMAGQPSLPSDH 445
Query: 127 DGFFYSLFQKR 137
DGF+Y+ FQKR
Sbjct: 446 DGFYYARFQKR 456
>gi|94312493|ref|YP_585703.1| tRNA and rRNA cytosine-C5-methylase [Cupriavidus metallidurans
CH34]
gi|93356345|gb|ABF10434.1| tRNA and rRNA cytosine-C5-methylase (sun protein) [Cupriavidus
metallidurans CH34]
Length = 457
Score = 138 bits (348), Expect = 6e-31, Method: Composition-based stats.
Identities = 63/131 (48%), Positives = 88/131 (67%), Gaps = 14/131 (10%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRILAD+PC+ SG+VRR+PDI WLRR++DI KL +I++ LW +LKPGG
Sbjct: 326 WWDGQQFDRILADVPCSASGIVRRHPDIRWLRRESDIAKLVNEQRRIVSQLWSLLKPGGI 385
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQ--------------DY 126
L++VTCS++ E EEQA+ F D+IRL +PGQLLP ++ D+
Sbjct: 386 LVYVTCSIFPTEGEEQALWFGAQLPDAIRLQAPGQLLPGTKAQETAGTNMAGQPSLPSDH 445
Query: 127 DGFFYSLFQKR 137
DGF+Y+ FQKR
Sbjct: 446 DGFYYARFQKR 456
>gi|254251085|ref|ZP_04944403.1| tRNA and rRNA cytosine-C5-methylase [Burkholderia dolosa AUO158]
gi|124893694|gb|EAY67574.1| tRNA and rRNA cytosine-C5-methylase [Burkholderia dolosa AUO158]
Length = 366
Score = 138 bits (347), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 64/131 (48%), Positives = 86/131 (65%), Gaps = 14/131 (10%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y + FDRILAD+PC+ SG+VRR+PDI WLRR DI L +IL+ LW ++KPGG+
Sbjct: 236 WYDGRPFDRILADVPCSASGIVRRHPDIRWLRRATDIPALVAEQRRILSALWPLVKPGGE 295
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTV--------------NKKQDY 126
LL+VTCS++ EE E QA F +D++RL++PGQLLP+ D+
Sbjct: 296 LLYVTCSIFPEEGESQARWFEAACEDAVRLDAPGQLLPSAAPGAAHRAATTGASGPNTDH 355
Query: 127 DGFFYSLFQKR 137
DGFFY+ FQKR
Sbjct: 356 DGFFYARFQKR 366
>gi|421476812|ref|ZP_15924675.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
multivorans CF2]
gi|400227654|gb|EJO57642.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
multivorans CF2]
Length = 487
Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats.
Identities = 64/131 (48%), Positives = 88/131 (67%), Gaps = 14/131 (10%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y + FDRILAD+PC+ SG+VRR+PDI WLRR+ DI L +IL+ LW ++KPGG+
Sbjct: 357 WYDGRPFDRILADVPCSASGIVRRHPDIRWLRREADIPALVAEQRRILSALWPLVKPGGE 416
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTV--------------NKKQDY 126
LL+VTCS++ EE E+QA F +D++RL++PGQLLP + D+
Sbjct: 417 LLYVTCSIFPEEGEQQARWFEAACEDAVRLDAPGQLLPRAASGGAGSEGTAGVPDPTTDH 476
Query: 127 DGFFYSLFQKR 137
DGFFY+ FQKR
Sbjct: 477 DGFFYARFQKR 487
>gi|416996031|ref|ZP_11939131.1| 16S rRNA methyltransferase B, partial [Burkholderia sp. TJI49]
gi|325518100|gb|EGC97891.1| 16S rRNA methyltransferase B [Burkholderia sp. TJI49]
Length = 362
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 63/131 (48%), Positives = 89/131 (67%), Gaps = 14/131 (10%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRILAD+PC+ SG+VRR+PDI WLRR+ DI L +IL+ LW ++KPGG+
Sbjct: 232 WHDGRPFDRILADVPCSASGIVRRHPDIRWLRREADIAALVAEQRRILSALWPLVKPGGE 291
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLP--------------TVNKKQDY 126
LL+VTCS++ EE E QA F +D++RL++PGQLLP +++ D+
Sbjct: 292 LLYVTCSIFPEEGELQARWFEAACEDAVRLDAPGQLLPRAVPDGVRGGAAVGALDQNTDH 351
Query: 127 DGFFYSLFQKR 137
DGFFY+ FQKR
Sbjct: 352 DGFFYARFQKR 362
>gi|91781434|ref|YP_556640.1| Fmu, rRNA SAM-dependent methyltransferase [Burkholderia xenovorans
LB400]
gi|91685388|gb|ABE28588.1| Fmu, rRNA SAM-dependent methyltransferase [Burkholderia xenovorans
LB400]
Length = 457
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 64/132 (48%), Positives = 87/132 (65%), Gaps = 21/132 (15%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRILAD+PC+ SG+VRR+PDI WLRR +DI L +IL+ LW ++KPGG+LL+VTC
Sbjct: 326 FDRILADVPCSASGIVRRHPDIRWLRRASDIPALVAEQRRILDALWPLVKPGGELLYVTC 385
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNK---------------------KQD 125
S++ EE E QA F ++D++RL++PGQLLP+V + D
Sbjct: 386 SIFPEEGELQAQWFGNKYQDAVRLDAPGQLLPSVARAPADASAGSHAGQSAEDSAGANSD 445
Query: 126 YDGFFYSLFQKR 137
+DGFFY+ FQKR
Sbjct: 446 HDGFFYARFQKR 457
>gi|385207341|ref|ZP_10034209.1| ribosomal RNA small subunit methyltransferase RsmB [Burkholderia
sp. Ch1-1]
gi|385179679|gb|EIF28955.1| ribosomal RNA small subunit methyltransferase RsmB [Burkholderia
sp. Ch1-1]
Length = 457
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 64/132 (48%), Positives = 87/132 (65%), Gaps = 21/132 (15%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRILAD+PC+ SG+VRR+PDI WLRR +DI L +IL+ LW ++KPGG+LL+VTC
Sbjct: 326 FDRILADVPCSASGIVRRHPDIRWLRRASDIPALVAEQRRILDALWPLVKPGGELLYVTC 385
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNK---------------------KQD 125
S++ EE E QA F ++D++RL++PGQLLP+V + D
Sbjct: 386 SIFPEEGELQAQWFGNKYQDAVRLDAPGQLLPSVARAPADTSAGSHAGQSAEDSAGANSD 445
Query: 126 YDGFFYSLFQKR 137
+DGFFY+ FQKR
Sbjct: 446 HDGFFYARFQKR 457
>gi|254246867|ref|ZP_04940188.1| Fmu, rRNA SAM-dependent methyltransferase [Burkholderia cenocepacia
PC184]
gi|124871643|gb|EAY63359.1| Fmu, rRNA SAM-dependent methyltransferase [Burkholderia cenocepacia
PC184]
Length = 463
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 64/127 (50%), Positives = 88/127 (69%), Gaps = 10/127 (7%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y + FDRILAD+PC+ SG+VRR+PDI WLRR+ DI L +IL LW ++KPGG+
Sbjct: 337 WYDGRPFDRILADVPCSASGIVRRHPDIRWLRREADIPALVAEQRRILWALWPLVKPGGE 396
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLP----------TVNKKQDYDGFF 130
LL+VTCS++ EE E QA F +D++RL++PGQLLP +++ D+DGFF
Sbjct: 397 LLYVTCSIFPEEGELQARWFEAACEDAVRLDAPGQLLPGSVQGRAAAGALDQNTDHDGFF 456
Query: 131 YSLFQKR 137
Y+ FQKR
Sbjct: 457 YARFQKR 463
>gi|221214672|ref|ZP_03587642.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
multivorans CGD1]
gi|221165562|gb|EED98038.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
multivorans CGD1]
Length = 490
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 64/131 (48%), Positives = 88/131 (67%), Gaps = 14/131 (10%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y + FDRILAD+PC+ SG+VRR+PDI WLRR+ DI L +IL+ LW ++KPGG+
Sbjct: 360 WYDGRPFDRILADVPCSASGIVRRHPDIRWLRREADIPALVAEQRRILSALWPLVKPGGE 419
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTV--------------NKKQDY 126
LL+VTCS++ EE E+QA F +D++RL++PGQLLP + D+
Sbjct: 420 LLYVTCSIFPEEGEQQARWFEAACEDAVRLDAPGQLLPRAASGGAGSEGAAGVPDPTTDH 479
Query: 127 DGFFYSLFQKR 137
DGFFY+ FQKR
Sbjct: 480 DGFFYARFQKR 490
>gi|189348997|ref|YP_001944625.1| Sun protein [Burkholderia multivorans ATCC 17616]
gi|189333019|dbj|BAG42089.1| Sun protein [Burkholderia multivorans ATCC 17616]
Length = 467
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 64/131 (48%), Positives = 88/131 (67%), Gaps = 14/131 (10%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y + FDRILAD+PC+ SG+VRR+PDI WLRR+ DI L +IL+ LW ++KPGG+
Sbjct: 337 WYDGRPFDRILADVPCSASGIVRRHPDIRWLRREADIPALVAEQRRILSALWPLVKPGGE 396
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTV--------------NKKQDY 126
LL+VTCS++ EE E+QA F +D++RL++PGQLLP + D+
Sbjct: 397 LLYVTCSIFPEEGEQQARWFEAACEDAVRLDAPGQLLPRAASGGAGSEGAAGVPDPTTDH 456
Query: 127 DGFFYSLFQKR 137
DGFFY+ FQKR
Sbjct: 457 DGFFYARFQKR 467
>gi|161526289|ref|YP_001581301.1| sun protein [Burkholderia multivorans ATCC 17616]
gi|160343718|gb|ABX16804.1| sun protein [Burkholderia multivorans ATCC 17616]
Length = 488
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 64/131 (48%), Positives = 88/131 (67%), Gaps = 14/131 (10%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y + FDRILAD+PC+ SG+VRR+PDI WLRR+ DI L +IL+ LW ++KPGG+
Sbjct: 358 WYDGRPFDRILADVPCSASGIVRRHPDIRWLRREADIPALVAEQRRILSALWPLVKPGGE 417
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTV--------------NKKQDY 126
LL+VTCS++ EE E+QA F +D++RL++PGQLLP + D+
Sbjct: 418 LLYVTCSIFPEEGEQQARWFEAACEDAVRLDAPGQLLPRAASGGAGSEGAAGVPDPTTDH 477
Query: 127 DGFFYSLFQKR 137
DGFFY+ FQKR
Sbjct: 478 DGFFYARFQKR 488
>gi|387903637|ref|YP_006333976.1| ribosomal RNA small subunit methyltransferase B [Burkholderia sp.
KJ006]
gi|387578529|gb|AFJ87245.1| Ribosomal RNA small subunit methyltransferase B [Burkholderia sp.
KJ006]
Length = 462
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 63/126 (50%), Positives = 88/126 (69%), Gaps = 9/126 (7%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y + FDRILAD+PC+ SG+VRR+PDI WLRR+ DI L +IL+ LW ++KPGG+
Sbjct: 337 WYDGRPFDRILADVPCSASGIVRRHPDIRWLRREADIAALVAEQRRILSALWPLVKPGGE 396
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLP---------TVNKKQDYDGFFY 131
LL+VTCS++ +E E QA F +D++RL++PGQLLP ++ D+DGFFY
Sbjct: 397 LLYVTCSIFPDEGELQARWFEAACEDAVRLDAPGQLLPGGVRGATAGALDPTTDHDGFFY 456
Query: 132 SLFQKR 137
+ FQKR
Sbjct: 457 ARFQKR 462
>gi|134297372|ref|YP_001121107.1| sun protein [Burkholderia vietnamiensis G4]
gi|134140529|gb|ABO56272.1| sun protein [Burkholderia vietnamiensis G4]
Length = 494
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 63/126 (50%), Positives = 88/126 (69%), Gaps = 9/126 (7%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y + FDRILAD+PC+ SG+VRR+PDI WLRR+ DI L +IL+ LW ++KPGG+
Sbjct: 369 WYDGRPFDRILADVPCSASGIVRRHPDIRWLRREADIAALVAEQRRILSALWPLVKPGGE 428
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLP---------TVNKKQDYDGFFY 131
LL+VTCS++ +E E QA F +D++RL++PGQLLP ++ D+DGFFY
Sbjct: 429 LLYVTCSIFPDEGELQARWFEAACEDAVRLDAPGQLLPGGVRGATAGALDPTTDHDGFFY 488
Query: 132 SLFQKR 137
+ FQKR
Sbjct: 489 ARFQKR 494
>gi|339905983|ref|YP_002913172.2| 16S rRNA methyltransferase B [Burkholderia glumae BGR1]
gi|339305137|gb|ACR30468.2| ribosomal RNA small subunit methyltransferase B [Burkholderia
glumae BGR1]
Length = 483
Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 64/130 (49%), Positives = 87/130 (66%), Gaps = 13/130 (10%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRILAD+PC+ SG+VRR+PDI WLRR+ DI L +IL LW +LKPGG+
Sbjct: 354 WHDGRPFDRILADVPCSASGIVRRHPDIRWLRRETDIAALVAEQRRILQALWPLLKPGGE 413
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLP-------------TVNKKQDYD 127
LL+VTCS++ EE E QA F +D++RL++PGQLLP ++ D+D
Sbjct: 414 LLYVTCSVFPEEGEAQARWFEGAVQDAVRLDAPGQLLPRAAAGRLPYPGHDEAARQADHD 473
Query: 128 GFFYSLFQKR 137
GFFY+ FQKR
Sbjct: 474 GFFYARFQKR 483
>gi|330818681|ref|YP_004362386.1| Sun protein [Burkholderia gladioli BSR3]
gi|327371074|gb|AEA62430.1| Sun protein [Burkholderia gladioli BSR3]
Length = 476
Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 64/131 (48%), Positives = 88/131 (67%), Gaps = 14/131 (10%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRILAD+PC+ SG+VRR+PDI WLRR+ DI L +IL LW +LKPGG+
Sbjct: 346 WHDGRAFDRILADVPCSASGIVRRHPDIRWLRREADIAALVAEQRRILLALWPLLKPGGE 405
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLP--------------TVNKKQDY 126
LL+VTCS++ EE E+QA F +D++RL++PGQLLP ++ D+
Sbjct: 406 LLYVTCSIFPEEGEQQARWFEDAVQDAVRLDAPGQLLPRAAASRLPGDAGHDEAARQADH 465
Query: 127 DGFFYSLFQKR 137
DGFFY+ FQKR
Sbjct: 466 DGFFYARFQKR 476
>gi|170694011|ref|ZP_02885167.1| sun protein [Burkholderia graminis C4D1M]
gi|170141083|gb|EDT09255.1| sun protein [Burkholderia graminis C4D1M]
Length = 479
Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 64/132 (48%), Positives = 86/132 (65%), Gaps = 21/132 (15%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRILAD+PC+ SG+VRR+PDI WLRR +DI L +IL LW ++KPGG+LL+VTC
Sbjct: 348 FDRILADVPCSASGIVRRHPDIRWLRRASDIPALVDEQRRILGALWPLVKPGGELLYVTC 407
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNK---------------------KQD 125
S++ EE E QA F ++D++RL++PGQLLP+V + D
Sbjct: 408 SIFPEEGELQAQWFGNKYQDAVRLDAPGQLLPSVARAPADTSAGSHAGEFADISAGANSD 467
Query: 126 YDGFFYSLFQKR 137
+DGFFY+ FQKR
Sbjct: 468 HDGFFYARFQKR 479
>gi|73543087|ref|YP_297607.1| rRNA SAM-dependent methyltransferase [Ralstonia eutropha JMP134]
gi|72120500|gb|AAZ62763.1| Fmu, rRNA SAM-dependent methyltransferase [Ralstonia eutropha
JMP134]
Length = 457
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 64/131 (48%), Positives = 86/131 (65%), Gaps = 14/131 (10%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRILAD+PC+ SG+VRR+PDI WLRR+ DI +L +I++ LW +LKPGG
Sbjct: 326 WWDGQQFDRILADVPCSASGIVRRHPDIRWLRREADIARLVNEQRRIVSQLWPLLKPGGI 385
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQ--------------DY 126
L++VTCS++ E EEQA F D+IRL +PGQLLP + Q D+
Sbjct: 386 LVYVTCSIFPTEGEEQARWFGAQLADAIRLQAPGQLLPGTHATQPAGDNHAGQVSLPSDH 445
Query: 127 DGFFYSLFQKR 137
DGFFY+ FQKR
Sbjct: 446 DGFFYARFQKR 456
>gi|149925342|ref|ZP_01913606.1| hypothetical protein LMED105_03942 [Limnobacter sp. MED105]
gi|149825459|gb|EDM84667.1| hypothetical protein LMED105_03942 [Limnobacter sp. MED105]
Length = 455
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 67/116 (57%), Positives = 80/116 (68%), Gaps = 6/116 (5%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FD ILAD+PCTGSGVVRR+PDIPWLRR +DI KLS+ KILN LW LKPGG LL VTC
Sbjct: 336 FDGILADVPCTGSGVVRRHPDIPWLRRPDDIAKLSQIQHKILNALWSTLKPGGTLLLVTC 395
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPT--VNKKQDY----DGFFYSLFQK 136
S++ EE A F NH D++ N+PG +LP N Q + DGFFY+ F+K
Sbjct: 396 SIFPEEGPLLAKAFLDNHSDALAQNAPGWVLPVAPANPDQGFDASPDGFFYAKFEK 451
>gi|339327727|ref|YP_004687420.1| ribosomal RNA small subunit methyltransferase B [Cupriavidus
necator N-1]
gi|338167884|gb|AEI78939.1| ribosomal RNA small subunit methyltransferase B [Cupriavidus
necator N-1]
Length = 473
Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats.
Identities = 65/135 (48%), Positives = 86/135 (63%), Gaps = 18/135 (13%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRILAD+PC+ SG+VRR+PDI WLRR+ DI KL +I++ LW +LKPGG
Sbjct: 338 WWDGQLFDRILADVPCSASGIVRRHPDIRWLRRETDIAKLITEQRRIVSQLWPLLKPGGI 397
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQ---------------- 124
L++VTCS++ E EEQA F D+IRL +PGQLLP + Q
Sbjct: 398 LVYVTCSIFPTEGEEQARWFGAQLADAIRLQAPGQLLPGTHTTQAAGANGEKDATAGTSL 457
Query: 125 --DYDGFFYSLFQKR 137
D+DGFFY+ FQKR
Sbjct: 458 PSDHDGFFYARFQKR 472
>gi|113869632|ref|YP_728121.1| tRNA and rRNA cytosine-C5-methylase [Ralstonia eutropha H16]
gi|113528408|emb|CAJ94753.1| tRNA and rRNA cytosine-C5-methylase [Ralstonia eutropha H16]
Length = 466
Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats.
Identities = 65/135 (48%), Positives = 86/135 (63%), Gaps = 18/135 (13%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRILAD+PC+ SG+VRR+PDI WLRR+ DI KL +I++ LW +LKPGG
Sbjct: 331 WWDGQPFDRILADVPCSASGIVRRHPDIRWLRRETDIAKLVTEQRRIVSQLWPLLKPGGI 390
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQ---------------- 124
L++VTCS++ E EEQA F D+IRL +PGQLLP + Q
Sbjct: 391 LVYVTCSIFPTEGEEQARWFGAQLADAIRLQAPGQLLPGTHATQAAGANGEKDATAGTSL 450
Query: 125 --DYDGFFYSLFQKR 137
D+DGFFY+ FQKR
Sbjct: 451 PSDHDGFFYARFQKR 465
>gi|293602344|ref|ZP_06684790.1| RNA methyltransferase Sun [Achromobacter piechaudii ATCC 43553]
gi|292819106|gb|EFF78141.1| RNA methyltransferase Sun [Achromobacter piechaudii ATCC 43553]
Length = 445
Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats.
Identities = 58/116 (50%), Positives = 85/116 (73%), Gaps = 3/116 (2%)
Query: 25 KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 84
K FD +LAD+PCT SG+VRR+PDI WLRR+ND+++ + +IL++LWK + PGG+LL+V
Sbjct: 329 KPFDAVLADVPCTASGIVRRHPDIRWLRRENDVRRTATLQARILDSLWKTVAPGGRLLYV 388
Query: 85 TCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPT---VNKKQDYDGFFYSLFQKR 137
TCS++ E QA+ F + H ++ RL++PGQLLP + +DGFFY+LF K+
Sbjct: 389 TCSVFPIEGARQALEFMQRHPEAQRLDAPGQLLPVALDATPAEQHDGFFYALFAKQ 444
>gi|187922320|ref|YP_001893962.1| sun protein [Burkholderia phytofirmans PsJN]
gi|187713514|gb|ACD14738.1| sun protein [Burkholderia phytofirmans PsJN]
Length = 457
Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats.
Identities = 63/132 (47%), Positives = 86/132 (65%), Gaps = 21/132 (15%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRILAD+PC+ SG+VRR+PDI WLRR +DI L +IL+ LW ++KPGG+LL+VTC
Sbjct: 326 FDRILADVPCSASGIVRRHPDIRWLRRASDIPALVTEQRRILDALWPLVKPGGELLYVTC 385
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNK---------------------KQD 125
S++ EE E QA F ++D++RL++PGQLLP+ + D
Sbjct: 386 SIFPEEGELQAQWFGNKYQDAVRLDAPGQLLPSAARAPADTSAGSHAGQPAEDSAGANSD 445
Query: 126 YDGFFYSLFQKR 137
+DGFFY+ FQKR
Sbjct: 446 HDGFFYARFQKR 457
>gi|390569588|ref|ZP_10249873.1| 16S rRNA methyltransferase B [Burkholderia terrae BS001]
gi|389938448|gb|EIN00292.1| 16S rRNA methyltransferase B [Burkholderia terrae BS001]
Length = 473
Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats.
Identities = 64/128 (50%), Positives = 84/128 (65%), Gaps = 17/128 (13%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRILAD+PC+ SG+VRR+PDI WLRR +DI L + +IL LW ++K GG+LL+VTC
Sbjct: 346 FDRILADVPCSASGIVRRHPDIRWLRRASDIPALVEEQRRILEALWPLVKTGGELLYVTC 405
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQ-----------------DYDGF 129
S++ EE E QA F H D++RL++PGQLLP V + D+DGF
Sbjct: 406 SIFPEEGELQAQWFGNQHADAVRLDAPGQLLPAVARAPADVSAGSRAGQSTGSSLDHDGF 465
Query: 130 FYSLFQKR 137
FY+ FQKR
Sbjct: 466 FYARFQKR 473
>gi|170697712|ref|ZP_02888799.1| sun protein [Burkholderia ambifaria IOP40-10]
gi|170137327|gb|EDT05568.1| sun protein [Burkholderia ambifaria IOP40-10]
Length = 462
Score = 135 bits (341), Expect = 5e-30, Method: Composition-based stats.
Identities = 63/126 (50%), Positives = 87/126 (69%), Gaps = 9/126 (7%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y + FDRILAD+PC+ SG+VRR+PDI WLRR+ DI L +IL LW ++KPGG+
Sbjct: 337 WYDGRPFDRILADVPCSASGIVRRHPDIRWLRREADIAALVAEQRRILTALWPLVKPGGE 396
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLL---------PTVNKKQDYDGFFY 131
LL+VTCS++ EE E QA F +D++RL++PGQLL +++ D+DGFFY
Sbjct: 397 LLYVTCSIFPEEGELQARWFEAACEDAVRLDAPGQLLPGGVPAGAAGALDQNTDHDGFFY 456
Query: 132 SLFQKR 137
+ FQKR
Sbjct: 457 ARFQKR 462
>gi|402565113|ref|YP_006614458.1| Ribosomal RNA small subunit methyltransferase B [Burkholderia
cepacia GG4]
gi|402246310|gb|AFQ46764.1| Ribosomal RNA small subunit methyltransferase B [Burkholderia
cepacia GG4]
Length = 462
Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats.
Identities = 63/126 (50%), Positives = 87/126 (69%), Gaps = 9/126 (7%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y + FDRILAD+PC+ SG+VRR+PDI WLRR+ DI L +IL LW ++K GG+
Sbjct: 337 WYDGRAFDRILADVPCSASGIVRRHPDIRWLRREADIAALVAEQRRILAALWPLVKQGGE 396
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLP---------TVNKKQDYDGFFY 131
LL+VTCS++ EE E QA F +D++RL++PGQLLP +++ D+DGFFY
Sbjct: 397 LLYVTCSIFPEEGELQARWFEAACEDAVRLDAPGQLLPGGVHGGAAGALDQNTDHDGFFY 456
Query: 132 SLFQKR 137
+ FQKR
Sbjct: 457 ARFQKR 462
>gi|421467918|ref|ZP_15916498.1| ribosomal RNA small subunit methyltransferase B, partial
[Burkholderia multivorans ATCC BAA-247]
gi|400232958|gb|EJO62542.1| ribosomal RNA small subunit methyltransferase B, partial
[Burkholderia multivorans ATCC BAA-247]
Length = 445
Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats.
Identities = 64/131 (48%), Positives = 87/131 (66%), Gaps = 14/131 (10%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y + FDRILAD+PC+ SG+VRR+PDI WLRR+ DI L +IL+ LW +LK GG+
Sbjct: 315 WYDGRPFDRILADVPCSASGIVRRHPDIRWLRREADIPALVAEQRRILSALWPLLKEGGE 374
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTV--------------NKKQDY 126
LL+VTCS++ EE E+QA F +D++RL++PGQLLP + D+
Sbjct: 375 LLYVTCSIFPEEGEQQARWFEAACEDAVRLDAPGQLLPRAASGGAGSEGTAGVPDPTTDH 434
Query: 127 DGFFYSLFQKR 137
DGFFY+ FQKR
Sbjct: 435 DGFFYARFQKR 445
>gi|221201862|ref|ZP_03574899.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
multivorans CGD2M]
gi|221207632|ref|ZP_03580640.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
multivorans CGD2]
gi|221172478|gb|EEE04917.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
multivorans CGD2]
gi|221178282|gb|EEE10692.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
multivorans CGD2M]
Length = 467
Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats.
Identities = 64/131 (48%), Positives = 87/131 (66%), Gaps = 14/131 (10%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y + FDRILAD+PC+ SG+VRR+PDI WLRR+ DI L +IL+ LW +LK GG+
Sbjct: 337 WYDGRPFDRILADVPCSASGIVRRHPDIRWLRREADIPALVAEQRRILSALWPLLKQGGE 396
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTV--------------NKKQDY 126
LL+VTCS++ EE E+QA F +D++RL++PGQLLP + D+
Sbjct: 397 LLYVTCSIFPEEGEQQARWFEAACEDAVRLDAPGQLLPRAASGGAGSEGTAGVPDPTTDH 456
Query: 127 DGFFYSLFQKR 137
DGFFY+ FQKR
Sbjct: 457 DGFFYARFQKR 467
>gi|167585080|ref|ZP_02377468.1| Fmu, rRNA SAM-dependent methyltransferase [Burkholderia ubonensis
Bu]
Length = 465
Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats.
Identities = 63/129 (48%), Positives = 88/129 (68%), Gaps = 12/129 (9%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRILAD+PC+ SG+VRR+PDI WLRR+ DI L +IL+ LW ++KPGG+
Sbjct: 337 WHDGRPFDRILADVPCSASGIVRRHPDIRWLRREADIPALVAEQRRILSALWPLVKPGGE 396
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTV------------NKKQDYDG 128
LL+VTCS++ EE E QA F +D++RL++PGQLLP ++ D+DG
Sbjct: 397 LLYVTCSIFPEEGELQARWFEAACEDAVRLDAPGQLLPRAASGGAQAGAAGPDQNTDHDG 456
Query: 129 FFYSLFQKR 137
FFY+ FQKR
Sbjct: 457 FFYARFQKR 465
>gi|374370222|ref|ZP_09628231.1| rRNA SAM-dependent methyltransferase [Cupriavidus basilensis OR16]
gi|373098224|gb|EHP39336.1| rRNA SAM-dependent methyltransferase [Cupriavidus basilensis OR16]
Length = 450
Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats.
Identities = 62/130 (47%), Positives = 87/130 (66%), Gaps = 13/130 (10%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ N+ +DRILAD+PC+ SG+VRR+PDI WLRR+ DI +L +I++ LW +LKPGG
Sbjct: 320 WWDNRQYDRILADVPCSASGIVRRHPDIRWLRREVDIPRLVTEQRRIVSQLWNLLKPGGI 379
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKK-------------QDYD 127
L++VTCS++ E+EEQA F D+IRL +PGQ+LP + D+D
Sbjct: 380 LVYVTCSIFPTENEEQARWFGAQLPDAIRLQAPGQMLPGSKDQLAGGGDGSQEGLPTDHD 439
Query: 128 GFFYSLFQKR 137
GFFY+ FQKR
Sbjct: 440 GFFYARFQKR 449
>gi|115353229|ref|YP_775068.1| sun protein [Burkholderia ambifaria AMMD]
gi|115283217|gb|ABI88734.1| sun protein [Burkholderia ambifaria AMMD]
Length = 462
Score = 134 bits (338), Expect = 9e-30, Method: Composition-based stats.
Identities = 64/126 (50%), Positives = 87/126 (69%), Gaps = 9/126 (7%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y + FDRILAD+PC+ SG+VRR+PDI WLRR+ DI L +IL LW ++KPGG+
Sbjct: 337 WYDGRPFDRILADVPCSASGIVRRHPDIRWLRREADIAALVAEQRRILTALWPLVKPGGE 396
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTV---------NKKQDYDGFFY 131
LL+VTCS++ EE E QA F +D++RL++PGQLLP ++ D+DGFFY
Sbjct: 397 LLYVTCSIFPEEGELQARWFEAACEDAVRLDAPGQLLPGGVPAGAAGARDQTTDHDGFFY 456
Query: 132 SLFQKR 137
+ FQKR
Sbjct: 457 ARFQKR 462
>gi|421483678|ref|ZP_15931251.1| methyltransferase [Achromobacter piechaudii HLE]
gi|400197961|gb|EJO30924.1| methyltransferase [Achromobacter piechaudii HLE]
Length = 422
Score = 134 bits (338), Expect = 9e-30, Method: Composition-based stats.
Identities = 58/120 (48%), Positives = 86/120 (71%), Gaps = 3/120 (2%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ K FD +LAD+PCT SG+VRR+PDI WLRR+ND+++ + KIL++LW+ + PGG+
Sbjct: 302 WWDGKPFDAVLADVPCTASGIVRRHPDIRWLRRENDVRRTATLQTKILDSLWQTVAPGGR 361
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPT---VNKKQDYDGFFYSLFQKR 137
LL+VTCS++ E QA+ F + H ++ RL++PGQLLP +DGFFY+LF K+
Sbjct: 362 LLYVTCSVFPIEGARQALEFLQRHPEAQRLDAPGQLLPVAVDATPAAQHDGFFYALFAKQ 421
>gi|377819468|ref|YP_004975839.1| sun protein [Burkholderia sp. YI23]
gi|357934303|gb|AET87862.1| sun protein [Burkholderia sp. YI23]
Length = 472
Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 64/142 (45%), Positives = 87/142 (61%), Gaps = 24/142 (16%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
+++ FDRILAD+PC+ SG+VRR+PDI WLRR +DI L +ILN LW ++ GG
Sbjct: 331 QWFDGTPFDRILADVPCSASGIVRRHPDIRWLRRASDIDALVAEQRRILNALWPLVAKGG 390
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQ--------------- 124
+LL+VTCS++ EE E QA F H+D++RL++PGQLLPT +
Sbjct: 391 ELLYVTCSMFPEEGEAQARWFGTAHEDAVRLDAPGQLLPTAARASADAVQGSPDSTNLAS 450
Query: 125 ---------DYDGFFYSLFQKR 137
D+DGFFY+ FQKR
Sbjct: 451 PDRDAEIFADHDGFFYARFQKR 472
>gi|422323729|ref|ZP_16404768.1| ribosomal RNA small subunit methyltransferase [Achromobacter
xylosoxidans C54]
gi|317401252|gb|EFV81894.1| ribosomal RNA small subunit methyltransferase [Achromobacter
xylosoxidans C54]
Length = 151
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 82/117 (70%), Gaps = 3/117 (2%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
+ FD +LAD+PCT SG+VRR+PDI WLRR+ND+++ + +IL+ LW+ + PGG+LL+
Sbjct: 34 GRPFDAVLADVPCTASGIVRRHPDIRWLRRENDLRRTATLQTRILDALWQTVAPGGRLLY 93
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPT---VNKKQDYDGFFYSLFQKR 137
VTCS++ E QA+ F + H D+ RL +PGQLLP +DGFFY+LF K+
Sbjct: 94 VTCSVFPIEGTRQALEFLQRHPDARRLEAPGQLLPVAVDATPAAQHDGFFYALFAKQ 150
>gi|332285815|ref|YP_004417726.1| hypothetical protein PT7_2562 [Pusillimonas sp. T7-7]
gi|330429768|gb|AEC21102.1| hypothetical protein PT7_2562 [Pusillimonas sp. T7-7]
Length = 451
Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats.
Identities = 59/117 (50%), Positives = 82/117 (70%), Gaps = 1/117 (0%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FD +LAD+PCT SGVVRR+PDI WLRR DI K + I++ LW +KPGG
Sbjct: 333 WWDGRPFDAVLADVPCTASGVVRRHPDIRWLRRSADIAKTAALQRSIVDALWTTVKPGGH 392
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQ-DYDGFFYSLFQK 136
+L+ TCS++ +E E+QA F+ H D+IRL +PGQLLP + + +DGFFY+LF K
Sbjct: 393 MLYATCSIFPQEGEQQAKKFATRHSDAIRLAAPGQLLPLADDQAVSHDGFFYALFAK 449
>gi|309780267|ref|ZP_07675018.1| ribosomal RNA small subunit methyltransferase B [Ralstonia sp.
5_7_47FAA]
gi|404394867|ref|ZP_10986670.1| ribosomal RNA small subunit methyltransferase B [Ralstonia sp.
5_2_56FAA]
gi|308920970|gb|EFP66616.1| ribosomal RNA small subunit methyltransferase B [Ralstonia sp.
5_7_47FAA]
gi|348613931|gb|EGY63500.1| ribosomal RNA small subunit methyltransferase B [Ralstonia sp.
5_2_56FAA]
Length = 443
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 62/131 (47%), Positives = 87/131 (66%), Gaps = 14/131 (10%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRILAD+PC+ +G+VRR+PDI WLRR D+K L+ I+ LW LKPGGK
Sbjct: 312 WWDGRPFDRILADVPCSAAGIVRRHPDIRWLRRPADLKALAGLQRDIVRALWACLKPGGK 371
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQ--------------DY 126
L++VTCS++ E E+QA F ++ +D+IRL++PGQLLP D+
Sbjct: 372 LVYVTCSIFPTEGEDQAQWFERHLEDAIRLHAPGQLLPVSPDAAQTSGFAAGASPLPLDH 431
Query: 127 DGFFYSLFQKR 137
DGFFY++FQKR
Sbjct: 432 DGFFYAVFQKR 442
>gi|241664927|ref|YP_002983287.1| sun protein [Ralstonia pickettii 12D]
gi|240866954|gb|ACS64615.1| sun protein [Ralstonia pickettii 12D]
Length = 443
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 62/131 (47%), Positives = 87/131 (66%), Gaps = 14/131 (10%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRILAD+PC+ +G+VRR+PDI WLRR D+K L+ I+ LW LKPGGK
Sbjct: 312 WWDGRPFDRILADVPCSAAGIVRRHPDIRWLRRPADLKALAGLQRDIVRALWACLKPGGK 371
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQ--------------DY 126
L++VTCS++ E E+QA F ++ +D+IRL++PGQLLP D+
Sbjct: 372 LVYVTCSIFPTEGEDQAQWFERHLEDAIRLHAPGQLLPVSPDAAQTSGFAAGASPLPLDH 431
Query: 127 DGFFYSLFQKR 137
DGFFY++FQKR
Sbjct: 432 DGFFYAVFQKR 442
>gi|311109240|ref|YP_003982093.1| methyltransferase [Achromobacter xylosoxidans A8]
gi|310763929|gb|ADP19378.1| ribosomal RNA small subunit methyltransferase B [Achromobacter
xylosoxidans A8]
Length = 445
Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats.
Identities = 58/116 (50%), Positives = 81/116 (69%), Gaps = 3/116 (2%)
Query: 25 KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 84
K FD +LAD+PCT SG+VRR+PDI WLRR+ND+++ + IL+ LW+ + PGG+LL+V
Sbjct: 329 KPFDAVLADVPCTASGIVRRHPDIRWLRRENDVRRTATLQSSILDALWRTVAPGGRLLYV 388
Query: 85 TCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPT---VNKKQDYDGFFYSLFQKR 137
TCS++ E QA+ F + H D+ RL +PGQLLP +DGFFY+LF K+
Sbjct: 389 TCSIFPIEGARQALEFMQRHPDAQRLEAPGQLLPVAVDATPAAQHDGFFYALFAKQ 444
>gi|312797598|ref|YP_004030520.1| 16S rRNA m(5)C 967 methyltransferase [Burkholderia rhizoxinica HKI
454]
gi|312169373|emb|CBW76376.1| 16S rRNA m(5)C 967 methyltransferase (EC 2.1.1.-) [Burkholderia
rhizoxinica HKI 454]
Length = 460
Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats.
Identities = 61/131 (46%), Positives = 87/131 (66%), Gaps = 13/131 (9%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
+++ + FDRILAD+PC+ SG+VRR+PDI WLRR DI L +I+ LW +L+ GG
Sbjct: 330 QWHDGRRFDRILADVPCSASGIVRRHPDIRWLRRSTDIIALVAEQRRIVQALWPLLERGG 389
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDY------------- 126
+LL+VTCS++ EE E+QA F +D++RL++PGQ+LPT + D+
Sbjct: 390 QLLYVTCSIFPEEGEQQAAWFEHALEDAVRLDAPGQILPTAARSGDHCDAHRDARLDLDQ 449
Query: 127 DGFFYSLFQKR 137
DGFFY+ FQKR
Sbjct: 450 DGFFYARFQKR 460
>gi|421750397|ref|ZP_16187625.1| rRNA SAM-dependent methyltransferase, partial [Cupriavidus necator
HPC(L)]
gi|409770548|gb|EKN53168.1| rRNA SAM-dependent methyltransferase, partial [Cupriavidus necator
HPC(L)]
Length = 233
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 63/131 (48%), Positives = 85/131 (64%), Gaps = 14/131 (10%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ K +DRILAD+PC+ SG+VRR+PDI WLRR++D+ KL +I++ LW +LKPGG
Sbjct: 102 WWDGKQYDRILADVPCSASGIVRRHPDIRWLRRESDLGKLVNEQRRIVSQLWPLLKPGGI 161
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTV--------------NKKQDY 126
L++VTCS++ E EEQA F D+IRL +PGQLLP D+
Sbjct: 162 LVYVTCSIFPTEGEEQARWFGAQLPDAIRLQAPGQLLPGSIPNGVADGGTGSHDGLPSDH 221
Query: 127 DGFFYSLFQKR 137
DGFFY+ FQKR
Sbjct: 222 DGFFYARFQKR 232
>gi|393775079|ref|ZP_10363393.1| 16s rrna s-adenosyl-l-methionine-dependent [Ralstonia sp. PBA]
gi|392717656|gb|EIZ05216.1| 16s rrna s-adenosyl-l-methionine-dependent [Ralstonia sp. PBA]
Length = 450
Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats.
Identities = 62/133 (46%), Positives = 86/133 (64%), Gaps = 16/133 (12%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRILAD+PC+ SG+VRR+PDI WLRR D+ +L +I++ LW L PGGK
Sbjct: 317 WWDGQPFDRILADVPCSASGIVRRHPDIRWLRRPEDLPQLQAVQRRIVSALWTTLAPGGK 376
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTV----------------NKKQ 124
LL+VTCS++ E E+QA F + +D+IRL +PGQLLP +
Sbjct: 377 LLYVTCSIFPTEGEQQARWFETHLQDAIRLQAPGQLLPQSGTPAEPVADPPAGAAHDAMG 436
Query: 125 DYDGFFYSLFQKR 137
D+DGF+Y+LFQKR
Sbjct: 437 DHDGFYYALFQKR 449
>gi|187930737|ref|YP_001901224.1| sun protein [Ralstonia pickettii 12J]
gi|187727627|gb|ACD28792.1| sun protein [Ralstonia pickettii 12J]
Length = 443
Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats.
Identities = 62/131 (47%), Positives = 86/131 (65%), Gaps = 14/131 (10%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRILAD+PC+ +G+VRR+PDI WLRR D+K L I+ LW LKPGGK
Sbjct: 312 WWDGRPFDRILADVPCSAAGIVRRHPDIRWLRRPADLKALVALQRDIVRALWACLKPGGK 371
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQ--------------DY 126
L++VTCS++ E E+QA F ++ +D+IRL++PGQLLP D+
Sbjct: 372 LVYVTCSIFPTEGEDQARWFERHLEDAIRLHAPGQLLPVSPDAAQASGFASGASPMPLDH 431
Query: 127 DGFFYSLFQKR 137
DGFFY++FQKR
Sbjct: 432 DGFFYAVFQKR 442
>gi|76812251|ref|YP_331765.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 1710b]
gi|76581704|gb|ABA51179.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 1710b]
Length = 519
Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats.
Identities = 62/132 (46%), Positives = 87/132 (65%), Gaps = 14/132 (10%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
+++ + FDR+LAD+PC+ SG+VRR+PDI WLRR DI L +IL+ LW ++KPGG
Sbjct: 388 QWHDGRPFDRVLADVPCSASGIVRRHPDIRWLRRAADIPALVAEQRRILSALWPLVKPGG 447
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPT--------------VNKKQD 125
+LL+VTCS++ EE E QA F +D++RL++PGQLLP + D
Sbjct: 448 ELLYVTCSIFPEEGELQARWFGDACQDAVRLDAPGQLLPQGATGGAPAVGGSGESGRHVD 507
Query: 126 YDGFFYSLFQKR 137
+DGFFY+ FQKR
Sbjct: 508 HDGFFYARFQKR 519
>gi|237810344|ref|YP_002894795.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei MSHR346]
gi|237505926|gb|ACQ98244.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei MSHR346]
Length = 469
Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats.
Identities = 62/132 (46%), Positives = 87/132 (65%), Gaps = 14/132 (10%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
+++ + FDR+LAD+PC+ SG+VRR+PDI WLRR DI L +IL+ LW ++KPGG
Sbjct: 338 QWHDGRPFDRVLADVPCSASGIVRRHPDIRWLRRAADIPALVAEQRRILSALWPLVKPGG 397
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPT--------------VNKKQD 125
+LL+VTCS++ EE E QA F +D++RL++PGQLLP + D
Sbjct: 398 ELLYVTCSIFPEEGELQARWFGDACQDAVRLDAPGQLLPQGATGGAPAVGGSGESGRHVD 457
Query: 126 YDGFFYSLFQKR 137
+DGFFY+ FQKR
Sbjct: 458 HDGFFYARFQKR 469
>gi|167917035|ref|ZP_02504126.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei BCC215]
Length = 469
Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats.
Identities = 62/132 (46%), Positives = 87/132 (65%), Gaps = 14/132 (10%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
+++ + FDR+LAD+PC+ SG+VRR+PDI WLRR DI L +IL+ LW ++KPGG
Sbjct: 338 QWHDGRPFDRVLADVPCSASGIVRRHPDIRWLRRAADIPALVAEQRRILSALWPLVKPGG 397
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPT--------------VNKKQD 125
+LL+VTCS++ EE E QA F +D++RL++PGQLLP + D
Sbjct: 398 ELLYVTCSIFPEEGELQARWFGDACQDAVRLDAPGQLLPQGATGGAPAVGGSGESGRHVD 457
Query: 126 YDGFFYSLFQKR 137
+DGFFY+ FQKR
Sbjct: 458 HDGFFYARFQKR 469
>gi|167900770|ref|ZP_02487975.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei NCTC 13177]
Length = 469
Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats.
Identities = 62/132 (46%), Positives = 87/132 (65%), Gaps = 14/132 (10%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
+++ + FDR+LAD+PC+ SG+VRR+PDI WLRR DI L +IL+ LW ++KPGG
Sbjct: 338 QWHDGRPFDRVLADVPCSASGIVRRHPDIRWLRRAADIPALVAEQRRILSALWPLVKPGG 397
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPT--------------VNKKQD 125
+LL+VTCS++ EE E QA F +D++RL++PGQLLP + D
Sbjct: 398 ELLYVTCSIFPEEGELQARWFGDACQDAVRLDAPGQLLPQGATGGAPAVGGSGESGRHVD 457
Query: 126 YDGFFYSLFQKR 137
+DGFFY+ FQKR
Sbjct: 458 HDGFFYARFQKR 469
>gi|167892276|ref|ZP_02479678.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 7894]
Length = 469
Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats.
Identities = 62/132 (46%), Positives = 87/132 (65%), Gaps = 14/132 (10%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
+++ + FDR+LAD+PC+ SG+VRR+PDI WLRR DI L +IL+ LW ++KPGG
Sbjct: 338 QWHDGRPFDRVLADVPCSASGIVRRHPDIRWLRRAADIPALVAEQRRILSALWPLVKPGG 397
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPT--------------VNKKQD 125
+LL+VTCS++ EE E QA F +D++RL++PGQLLP + D
Sbjct: 398 ELLYVTCSIFPEEGELQARWFGDACQDAVRLDAPGQLLPQGATGGAPAVGGSGESGRHVD 457
Query: 126 YDGFFYSLFQKR 137
+DGFFY+ FQKR
Sbjct: 458 HDGFFYARFQKR 469
>gi|134284097|ref|ZP_01770791.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 305]
gi|134244549|gb|EBA44653.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 305]
Length = 624
Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats.
Identities = 62/132 (46%), Positives = 87/132 (65%), Gaps = 14/132 (10%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
+++ + FDR+LAD+PC+ SG+VRR+PDI WLRR DI L +IL+ LW ++KPGG
Sbjct: 493 QWHDGRPFDRVLADVPCSASGIVRRHPDIRWLRRAADIPALVAEQRRILSALWPLVKPGG 552
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPT--------------VNKKQD 125
+LL+VTCS++ EE E QA F +D++RL++PGQLLP + D
Sbjct: 553 ELLYVTCSIFPEEGELQARWFGDACQDAVRLDAPGQLLPQGATGGAPAVGGSGESGRHVD 612
Query: 126 YDGFFYSLFQKR 137
+DGFFY+ FQKR
Sbjct: 613 HDGFFYARFQKR 624
>gi|126439349|ref|YP_001057209.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 668]
gi|167908993|ref|ZP_02496084.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 112]
gi|217424987|ref|ZP_03456483.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 576]
gi|254295711|ref|ZP_04963168.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 406e]
gi|126218842|gb|ABN82348.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 668]
gi|157805800|gb|EDO82970.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 406e]
gi|217392007|gb|EEC32033.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 576]
Length = 469
Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats.
Identities = 62/132 (46%), Positives = 87/132 (65%), Gaps = 14/132 (10%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
+++ + FDR+LAD+PC+ SG+VRR+PDI WLRR DI L +IL+ LW ++KPGG
Sbjct: 338 QWHDGRPFDRVLADVPCSASGIVRRHPDIRWLRRAADIPALVAEQRRILSALWPLVKPGG 397
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPT--------------VNKKQD 125
+LL+VTCS++ EE E QA F +D++RL++PGQLLP + D
Sbjct: 398 ELLYVTCSIFPEEGELQARWFGDACQDAVRLDAPGQLLPQGATGGAPAVGGSGESGRHVD 457
Query: 126 YDGFFYSLFQKR 137
+DGFFY+ FQKR
Sbjct: 458 HDGFFYARFQKR 469
>gi|167736565|ref|ZP_02409339.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 14]
gi|167822184|ref|ZP_02453655.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 9]
gi|226194606|ref|ZP_03790201.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei Pakistan 9]
gi|254182248|ref|ZP_04888845.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 1655]
gi|254188214|ref|ZP_04894726.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei Pasteur 52237]
gi|254260319|ref|ZP_04951373.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 1710a]
gi|386860244|ref|YP_006273193.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 1026b]
gi|418537471|ref|ZP_13103111.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 1026a]
gi|418539601|ref|ZP_13105188.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 1258a]
gi|418545760|ref|ZP_13111003.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 1258b]
gi|157935894|gb|EDO91564.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei Pasteur 52237]
gi|184212786|gb|EDU09829.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 1655]
gi|225933307|gb|EEH29299.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei Pakistan 9]
gi|254219008|gb|EET08392.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 1710a]
gi|385350180|gb|EIF56732.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 1026a]
gi|385364227|gb|EIF69956.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 1258a]
gi|385366242|gb|EIF71875.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 1258b]
gi|385657372|gb|AFI64795.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 1026b]
Length = 469
Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats.
Identities = 62/132 (46%), Positives = 87/132 (65%), Gaps = 14/132 (10%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
+++ + FDR+LAD+PC+ SG+VRR+PDI WLRR DI L +IL+ LW ++KPGG
Sbjct: 338 QWHDGRPFDRVLADVPCSASGIVRRHPDIRWLRRAADIPALVAEQRRILSALWPLVKPGG 397
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPT--------------VNKKQD 125
+LL+VTCS++ EE E QA F +D++RL++PGQLLP + D
Sbjct: 398 ELLYVTCSIFPEEGELQARWFGDACQDAVRLDAPGQLLPQGATGGAPAVGGSGESGRHVD 457
Query: 126 YDGFFYSLFQKR 137
+DGFFY+ FQKR
Sbjct: 458 HDGFFYARFQKR 469
>gi|53717766|ref|YP_106752.1| NOL1/NOP2/Sun family protein [Burkholderia pseudomallei K96243]
gi|53724953|ref|YP_101986.1| sun protein [Burkholderia mallei ATCC 23344]
gi|67642457|ref|ZP_00441213.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
mallei GB8 horse 4]
gi|121599506|ref|YP_994096.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
mallei SAVP1]
gi|124385742|ref|YP_001028242.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
mallei NCTC 10229]
gi|126451630|ref|YP_001064449.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 1106a]
gi|167003288|ref|ZP_02269077.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
mallei PRL-20]
gi|167717523|ref|ZP_02400759.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei DM98]
gi|167813639|ref|ZP_02445319.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 91]
gi|167843776|ref|ZP_02469284.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei B7210]
gi|242316376|ref|ZP_04815392.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 1106b]
gi|254176710|ref|ZP_04883367.1| sun protein [Burkholderia mallei ATCC 10399]
gi|254197181|ref|ZP_04903604.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei S13]
gi|254203667|ref|ZP_04910027.1| sun protein [Burkholderia mallei FMH]
gi|254208643|ref|ZP_04914991.1| sun protein [Burkholderia mallei JHU]
gi|254360303|ref|ZP_04976573.1| sun protein [Burkholderia mallei 2002721280]
gi|403516819|ref|YP_006650952.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei BPC006]
gi|418375564|ref|ZP_12965636.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 354a]
gi|418552174|ref|ZP_13117063.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 354e]
gi|52208180|emb|CAH34111.1| NOL1/NOP2/Sun family protein [Burkholderia pseudomallei K96243]
gi|52428376|gb|AAU48969.1| sun protein [Burkholderia mallei ATCC 23344]
gi|121228316|gb|ABM50834.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
mallei SAVP1]
gi|126225272|gb|ABN88812.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 1106a]
gi|147745179|gb|EDK52259.1| sun protein [Burkholderia mallei FMH]
gi|147750519|gb|EDK57588.1| sun protein [Burkholderia mallei JHU]
gi|148029543|gb|EDK87448.1| sun protein [Burkholderia mallei 2002721280]
gi|160697751|gb|EDP87721.1| sun protein [Burkholderia mallei ATCC 10399]
gi|169653923|gb|EDS86616.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei S13]
gi|238523614|gb|EEP87051.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
mallei GB8 horse 4]
gi|242139615|gb|EES26017.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 1106b]
gi|243061145|gb|EES43331.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
mallei PRL-20]
gi|385373535|gb|EIF78557.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 354e]
gi|385378234|gb|EIF82717.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 354a]
gi|403072463|gb|AFR14043.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei BPC006]
Length = 469
Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats.
Identities = 62/132 (46%), Positives = 87/132 (65%), Gaps = 14/132 (10%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
+++ + FDR+LAD+PC+ SG+VRR+PDI WLRR DI L +IL+ LW ++KPGG
Sbjct: 338 QWHDGRPFDRVLADVPCSASGIVRRHPDIRWLRRAADIPALVAEQRRILSALWPLVKPGG 397
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPT--------------VNKKQD 125
+LL+VTCS++ EE E QA F +D++RL++PGQLLP + D
Sbjct: 398 ELLYVTCSIFPEEGELQARWFGDACQDAVRLDAPGQLLPQGATGGAPAVGGSGESGRHVD 457
Query: 126 YDGFFYSLFQKR 137
+DGFFY+ FQKR
Sbjct: 458 HDGFFYARFQKR 469
>gi|413963939|ref|ZP_11403166.1| 16S rRNA methyltransferase B [Burkholderia sp. SJ98]
gi|413929771|gb|EKS69059.1| 16S rRNA methyltransferase B [Burkholderia sp. SJ98]
Length = 472
Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats.
Identities = 63/142 (44%), Positives = 88/142 (61%), Gaps = 24/142 (16%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
+++ FDRILAD+PC+ SG+VRR+PDI WLRR +DI L +I++ LW ++ GG
Sbjct: 331 QWFDGATFDRILADVPCSASGIVRRHPDIRWLRRASDIDALVAEQRRIVSALWPLVAKGG 390
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQ--------------- 124
+LL+VTCS++ EE EEQA F H+D++RL++PGQLLPT +
Sbjct: 391 ELLYVTCSIFPEEGEEQARWFGTAHEDAVRLDAPGQLLPTAARASAVAAQGSPDSTNLAS 450
Query: 125 ---------DYDGFFYSLFQKR 137
D+DGFFY+ FQKR
Sbjct: 451 PHRDAETLADHDGFFYARFQKR 472
>gi|348618342|ref|ZP_08884870.1| 16S rRNA methyltransferase B (sun protein) [Candidatus
Glomeribacter gigasporarum BEG34]
gi|347816389|emb|CCD29582.1| 16S rRNA methyltransferase B (sun protein) [Candidatus
Glomeribacter gigasporarum BEG34]
Length = 509
Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats.
Identities = 59/119 (49%), Positives = 85/119 (71%), Gaps = 1/119 (0%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
+++ + FDRIL D PCTGSGV RR+PD+ WLRR +DI +L+ ++L +W +L GG
Sbjct: 391 QWWDGRRFDRILLDAPCTGSGVARRHPDLRWLRRASDIAQLAARQQQMLRAVWPLLNTGG 450
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVN-KKQDYDGFFYSLFQKR 137
+LL+ TCS++ EE E QA F + D++RL +PGQLLP+V +Q++DGFFY+ F KR
Sbjct: 451 ELLYSTCSVFPEEGEAQARAFERAASDAVRLPAPGQLLPSVTPAEQNHDGFFYARFLKR 509
>gi|167568296|ref|ZP_02361170.1| sun protein [Burkholderia oklahomensis C6786]
Length = 470
Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats.
Identities = 62/132 (46%), Positives = 86/132 (65%), Gaps = 14/132 (10%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
+++ + FDRILAD+PC+ SG+VRR+PDI WLRR DI L +IL LW ++KPGG
Sbjct: 339 QWHDGRPFDRILADVPCSASGIVRRHPDIRWLRRAADIPALVDEQRRILAALWPLVKPGG 398
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPT--------------VNKKQD 125
+LL+ TCS++ EE E QA F ++D++RL++PGQLLP + D
Sbjct: 399 ELLYATCSIFPEEGELQARWFGDAYQDAVRLDAPGQLLPQGASGGAPAVGGSSEPGRHVD 458
Query: 126 YDGFFYSLFQKR 137
+DGFFY+ FQKR
Sbjct: 459 HDGFFYARFQKR 470
>gi|359799922|ref|ZP_09302474.1| ribosomal RNA small subunit methyltransferase B [Achromobacter
arsenitoxydans SY8]
gi|359362034|gb|EHK63779.1| ribosomal RNA small subunit methyltransferase B [Achromobacter
arsenitoxydans SY8]
Length = 422
Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats.
Identities = 57/116 (49%), Positives = 83/116 (71%), Gaps = 3/116 (2%)
Query: 25 KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 84
K FD +LAD+PCT SG+VRR+PDI WLRR+ND+++ + +IL++LW + PGG+LL+V
Sbjct: 306 KPFDAVLADVPCTASGIVRRHPDIRWLRRENDLRRTAALQARILDSLWATVAPGGRLLYV 365
Query: 85 TCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPT---VNKKQDYDGFFYSLFQKR 137
TCS++ E QA+ F + H ++ RL++PGQLLP +DGFFY+LF K+
Sbjct: 366 TCSVFPIEGTRQALEFLQRHPEATRLDAPGQLLPVAVDATPAGQHDGFFYALFAKQ 421
>gi|300692914|ref|YP_003753909.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Ralstonia
solanacearum PSI07]
gi|299079974|emb|CBJ52651.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Ralstonia
solanacearum PSI07]
Length = 441
Score = 132 bits (331), Expect = 5e-29, Method: Composition-based stats.
Identities = 60/129 (46%), Positives = 86/129 (66%), Gaps = 12/129 (9%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRILAD+PC+ +G+VRR+PDI WLRR D+ L+ I++ LW LKPGGK
Sbjct: 312 WWDGRSFDRILADVPCSAAGIVRRHPDIRWLRRPADLPALAALQRDIVSALWACLKPGGK 371
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQ------------DYDG 128
L++VTCS++ E E QA F +D+IRL+ PGQLLP +++ D+DG
Sbjct: 372 LVYVTCSIFPTEGEAQARWFESRLQDAIRLDGPGQLLPAMSEATGGFAPGVSSLPLDHDG 431
Query: 129 FFYSLFQKR 137
F+Y++FQKR
Sbjct: 432 FYYAVFQKR 440
>gi|33591772|ref|NP_879416.1| hypothetical protein BP0569 [Bordetella pertussis Tohama I]
gi|384203075|ref|YP_005588814.1| hypothetical protein BPTD_0578 [Bordetella pertussis CS]
gi|408417231|ref|YP_006627938.1| hypothetical protein BN118_3498 [Bordetella pertussis 18323]
gi|33571415|emb|CAE44897.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
gi|332381189|gb|AEE66036.1| hypothetical protein BPTD_0578 [Bordetella pertussis CS]
gi|401779401|emb|CCJ64923.1| conserved hypothetical protein [Bordetella pertussis 18323]
Length = 444
Score = 132 bits (331), Expect = 7e-29, Method: Composition-based stats.
Identities = 56/120 (46%), Positives = 82/120 (68%), Gaps = 3/120 (2%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FD +LAD+PCT SG+VRR+PDI WLRR D+ + + +I + LW+ + PGG+
Sbjct: 324 WWDGRPFDAVLADVPCTASGIVRRHPDIRWLRRAKDVPRTAALQARIADALWRTVAPGGR 383
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPT---VNKKQDYDGFFYSLFQKR 137
LL+VTCS++ E EQA F++ H D+ L++PGQLLP + +DGFFY+LF KR
Sbjct: 384 LLYVTCSVFPAEGREQAEAFARRHADAAPLDAPGQLLPVAIDATPQAQHDGFFYALFAKR 443
>gi|145590255|ref|YP_001156852.1| sun protein [Polynucleobacter necessarius subsp. asymbioticus
QLW-P1DMWA-1]
gi|145048661|gb|ABP35288.1| sun protein [Polynucleobacter necessarius subsp. asymbioticus
QLW-P1DMWA-1]
Length = 438
Score = 132 bits (331), Expect = 7e-29, Method: Composition-based stats.
Identities = 59/110 (53%), Positives = 83/110 (75%), Gaps = 4/110 (3%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FD+IL D PC+ SG+V R+PDIP+LRR++DI L + +IL WKMLK GG LL+VTC
Sbjct: 330 FDKILIDAPCSASGIVARHPDIPFLRRESDIPVLQQRQREILTQAWKMLKSGGILLYVTC 389
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
S++ EE E+QA+ F++ H +++RL++PGQLLPT DGF+Y+LF+K
Sbjct: 390 SVFPEEGEDQAVWFAQEHSNALRLDAPGQLLPT----DANDGFYYALFKK 435
>gi|33599251|ref|NP_886811.1| hypothetical protein BB0262 [Bordetella bronchiseptica RB50]
gi|33575297|emb|CAE30760.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
Length = 444
Score = 131 bits (330), Expect = 7e-29, Method: Composition-based stats.
Identities = 56/120 (46%), Positives = 82/120 (68%), Gaps = 3/120 (2%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FD +LAD+PCT SG+VRR+PDI WLRR D+ + + +I + LW+ + PGG+
Sbjct: 324 WWDGRPFDAVLADVPCTASGIVRRHPDIRWLRRAEDVPRTAALQARIADALWRTVAPGGR 383
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPT---VNKKQDYDGFFYSLFQKR 137
LL+VTCS++ E EQA F++ H D+ L++PGQLLP + +DGFFY+LF KR
Sbjct: 384 LLYVTCSVFPAEGREQAEAFARRHADAAPLDAPGQLLPVAIDATPQAQHDGFFYALFAKR 443
>gi|427823291|ref|ZP_18990353.1| conserved hypothetical protein [Bordetella bronchiseptica Bbr77]
gi|410588556|emb|CCN03615.1| conserved hypothetical protein [Bordetella bronchiseptica Bbr77]
Length = 459
Score = 131 bits (330), Expect = 7e-29, Method: Composition-based stats.
Identities = 56/120 (46%), Positives = 82/120 (68%), Gaps = 3/120 (2%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FD +LAD+PCT SG+VRR+PDI WLRR D+ + + +I + LW+ + PGG+
Sbjct: 339 WWDGRPFDAVLADVPCTASGIVRRHPDIRWLRRAEDVPRTAALQARIADALWRTVAPGGR 398
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPT---VNKKQDYDGFFYSLFQKR 137
LL+VTCS++ E EQA F++ H D+ L++PGQLLP + +DGFFY+LF KR
Sbjct: 399 LLYVTCSVFPAEGREQAEAFARRHADAAPLDAPGQLLPVAIDATPQAQHDGFFYALFAKR 458
>gi|427817546|ref|ZP_18984609.1| conserved hypothetical protein [Bordetella bronchiseptica D445]
gi|410568546|emb|CCN16591.1| conserved hypothetical protein [Bordetella bronchiseptica D445]
Length = 444
Score = 131 bits (330), Expect = 7e-29, Method: Composition-based stats.
Identities = 56/120 (46%), Positives = 82/120 (68%), Gaps = 3/120 (2%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FD +LAD+PCT SG+VRR+PDI WLRR D+ + + +I + LW+ + PGG+
Sbjct: 324 WWDGRPFDAVLADVPCTASGIVRRHPDIRWLRRAEDVPRTAALQARIADALWRTVAPGGR 383
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPT---VNKKQDYDGFFYSLFQKR 137
LL+VTCS++ E EQA F++ H D+ L++PGQLLP + +DGFFY+LF KR
Sbjct: 384 LLYVTCSVFPAEGREQAEAFARRHADAAPLDAPGQLLPVAIDATPQAQHDGFFYALFAKR 443
>gi|427812512|ref|ZP_18979576.1| conserved hypothetical protein [Bordetella bronchiseptica 1289]
gi|410563512|emb|CCN21046.1| conserved hypothetical protein [Bordetella bronchiseptica 1289]
Length = 444
Score = 131 bits (330), Expect = 7e-29, Method: Composition-based stats.
Identities = 56/120 (46%), Positives = 82/120 (68%), Gaps = 3/120 (2%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FD +LAD+PCT SG+VRR+PDI WLRR D+ + + +I + LW+ + PGG+
Sbjct: 324 WWDGRPFDAVLADVPCTASGIVRRHPDIRWLRRAEDVPRTAALQARIADALWRTVAPGGR 383
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPT---VNKKQDYDGFFYSLFQKR 137
LL+VTCS++ E EQA F++ H D+ L++PGQLLP + +DGFFY+LF KR
Sbjct: 384 LLYVTCSVFPAEGREQAEAFARRHADAAPLDAPGQLLPVAIDATPQAQHDGFFYALFAKR 443
>gi|412340447|ref|YP_006969202.1| hypothetical protein BN112_3155 [Bordetella bronchiseptica 253]
gi|408770281|emb|CCJ55072.1| conserved hypothetical protein [Bordetella bronchiseptica 253]
Length = 444
Score = 131 bits (330), Expect = 7e-29, Method: Composition-based stats.
Identities = 56/120 (46%), Positives = 82/120 (68%), Gaps = 3/120 (2%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FD +LAD+PCT SG+VRR+PDI WLRR D+ + + +I + LW+ + PGG+
Sbjct: 324 WWDGRPFDAVLADVPCTASGIVRRHPDIRWLRRAEDVPRTAALQARIADALWRTVAPGGR 383
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPT---VNKKQDYDGFFYSLFQKR 137
LL+VTCS++ E EQA F++ H D+ L++PGQLLP + +DGFFY+LF KR
Sbjct: 384 LLYVTCSVFPAEGREQAEAFARRHADAAPLDAPGQLLPVAIDATPQAQHDGFFYALFAKR 443
>gi|410418059|ref|YP_006898508.1| hypothetical protein BN115_0247 [Bordetella bronchiseptica MO149]
gi|408445354|emb|CCJ57003.1| conserved hypothetical protein [Bordetella bronchiseptica MO149]
Length = 444
Score = 131 bits (330), Expect = 7e-29, Method: Composition-based stats.
Identities = 56/120 (46%), Positives = 82/120 (68%), Gaps = 3/120 (2%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FD +LAD+PCT SG+VRR+PDI WLRR D+ + + +I + LW+ + PGG+
Sbjct: 324 WWDGRPFDAVLADVPCTASGIVRRHPDIRWLRRAEDVPRTAALQARIADALWRTVAPGGR 383
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPT---VNKKQDYDGFFYSLFQKR 137
LL+VTCS++ E EQA F++ H D+ L++PGQLLP + +DGFFY+LF KR
Sbjct: 384 LLYVTCSVFPAEGREQAEAFARRHADAAPLDAPGQLLPVAIDATPQAQHDGFFYALFAKR 443
>gi|410471055|ref|YP_006894336.1| hypothetical protein BN117_0257 [Bordetella parapertussis Bpp5]
gi|408441165|emb|CCJ47590.1| conserved hypothetical protein [Bordetella parapertussis Bpp5]
Length = 444
Score = 131 bits (330), Expect = 7e-29, Method: Composition-based stats.
Identities = 56/120 (46%), Positives = 82/120 (68%), Gaps = 3/120 (2%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FD +LAD+PCT SG+VRR+PDI WLRR D+ + + +I + LW+ + PGG+
Sbjct: 324 WWDGRPFDAVLADVPCTASGIVRRHPDIRWLRRAEDVPRTAALQARIADALWRTVAPGGR 383
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPT---VNKKQDYDGFFYSLFQKR 137
LL+VTCS++ E EQA F++ H D+ L++PGQLLP + +DGFFY+LF KR
Sbjct: 384 LLYVTCSVFPAEGREQAEAFARRHADAAPLDAPGQLLPVAIDATPQAQHDGFFYALFAKR 443
>gi|344168503|emb|CCA80793.1| 16S rRNA m5C967 methyltransferase,S-adenosyl-L-methionine-dependent
[blood disease bacterium R229]
Length = 430
Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats.
Identities = 60/129 (46%), Positives = 86/129 (66%), Gaps = 12/129 (9%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRILAD+PC+ +G+VRR+PDI WLRR D+ L+ I++ LW LKPGGK
Sbjct: 301 WWDGRPFDRILADVPCSAAGIVRRHPDIRWLRRPADLPALAALQRDIVSALWACLKPGGK 360
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQ------------DYDG 128
L++VTCS++ E E QA F +D+IRL+ PGQLLP +++ D+DG
Sbjct: 361 LVYVTCSIFPTEGEAQARWFESRLQDAIRLDGPGQLLPAMSEATGGFAPGVSSLPLDHDG 420
Query: 129 FFYSLFQKR 137
F+Y++FQKR
Sbjct: 421 FYYAVFQKR 429
>gi|167617463|ref|ZP_02386094.1| sun protein [Burkholderia thailandensis Bt4]
gi|257140661|ref|ZP_05588923.1| sun protein [Burkholderia thailandensis E264]
Length = 470
Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats.
Identities = 61/132 (46%), Positives = 86/132 (65%), Gaps = 14/132 (10%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
+++ + FDR+LAD+PC+ SG+VRR+PDI WLRR DI L +IL+ LW ++KPGG
Sbjct: 339 QWHDGRAFDRVLADVPCSASGIVRRHPDIRWLRRAADIPALVAEQRRILSALWPLVKPGG 398
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTV--------------NKKQD 125
+LL+ TCS++ EE E QA F +D++RL++PGQLLP + D
Sbjct: 399 ELLYATCSIFPEEGELQARWFGDACQDAVRLDAPGQLLPQGATGGAPAAGGSDEPGRHVD 458
Query: 126 YDGFFYSLFQKR 137
+DGFFY+ FQKR
Sbjct: 459 HDGFFYARFQKR 470
>gi|83719791|ref|YP_440691.1| sun protein [Burkholderia thailandensis E264]
gi|83653616|gb|ABC37679.1| sun protein [Burkholderia thailandensis E264]
Length = 571
Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats.
Identities = 61/132 (46%), Positives = 86/132 (65%), Gaps = 14/132 (10%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
+++ + FDR+LAD+PC+ SG+VRR+PDI WLRR DI L +IL+ LW ++KPGG
Sbjct: 440 QWHDGRAFDRVLADVPCSASGIVRRHPDIRWLRRAADIPALVAEQRRILSALWPLVKPGG 499
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTV--------------NKKQD 125
+LL+ TCS++ EE E QA F +D++RL++PGQLLP + D
Sbjct: 500 ELLYATCSIFPEEGELQARWFGDACQDAVRLDAPGQLLPQGATGGAPAAGGSDEPGRHVD 559
Query: 126 YDGFFYSLFQKR 137
+DGFFY+ FQKR
Sbjct: 560 HDGFFYARFQKR 571
>gi|194291224|ref|YP_002007131.1| 16S rRNA m5c967 methyltransferase,
s-adenosyl-l-methionine-dependent [Cupriavidus
taiwanensis LMG 19424]
gi|193225059|emb|CAQ71070.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Cupriavidus
taiwanensis LMG 19424]
Length = 477
Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats.
Identities = 63/139 (45%), Positives = 86/139 (61%), Gaps = 22/139 (15%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRILAD+PC+ SG+VRR+PDI WLRR+ DI +L +I++ LW +LKPGG
Sbjct: 338 WWDGQPFDRILADVPCSASGIVRRHPDIRWLRRETDIARLITEQRRIVSQLWPLLKPGGI 397
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKK----------------- 123
L++VTCS++ E EEQA F + D+IRL +PGQLLP +
Sbjct: 398 LVYVTCSIFPTEGEEQARWFGEQLADAIRLQAPGQLLPGTHATLAAGADGDKATLDSSTD 457
Query: 124 -----QDYDGFFYSLFQKR 137
D+DGFFY+ FQKR
Sbjct: 458 GTSLPSDHDGFFYARFQKR 476
>gi|423014475|ref|ZP_17005196.1| ribosomal RNA small subunit methyltransferase B [Achromobacter
xylosoxidans AXX-A]
gi|338782478|gb|EGP46851.1| ribosomal RNA small subunit methyltransferase B [Achromobacter
xylosoxidans AXX-A]
Length = 445
Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats.
Identities = 57/116 (49%), Positives = 82/116 (70%), Gaps = 3/116 (2%)
Query: 25 KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 84
K FD +LAD+PCT SG+VRR+PDI WLRR+ND+++ + +IL+ LW+ + PGG+LL+V
Sbjct: 329 KPFDAVLADVPCTASGIVRRHPDIRWLRRENDVRRTATLQARILDALWRTVAPGGRLLYV 388
Query: 85 TCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPT---VNKKQDYDGFFYSLFQKR 137
TCS++ E QA+ F + H ++ RL++PGQLLP DGFFY+LF K+
Sbjct: 389 TCSIFPIEGTRQALEFLQRHPEAQRLDAPGQLLPVAVDATPAAQRDGFFYALFAKQ 444
>gi|451936720|ref|YP_007460574.1| ribosomal RNA small subunit methyltransferase B [Candidatus
Kinetoplastibacterium oncopeltii TCC290E]
gi|451777643|gb|AGF48618.1| ribosomal RNA small subunit methyltransferase B [Candidatus
Kinetoplastibacterium oncopeltii TCC290E]
Length = 450
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 58/121 (47%), Positives = 87/121 (71%), Gaps = 3/121 (2%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
+++ K FD +LAD+PC+ SG+VR++PDI WLR+++DI+K KI++ LW + PGG
Sbjct: 329 KWWDGKLFDAVLADVPCSASGIVRKHPDIRWLRKESDIQKFVLRQIKIVDALWNTVAPGG 388
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDY---DGFFYSLFQK 136
KLL+VTCS+++EE QA+ F H D+I L+SP Q+LP + DY DGFF++LF+K
Sbjct: 389 KLLYVTCSIFYEEGIGQALAFLDRHSDAIFLDSPSQILPIDDNNGDYVSHDGFFFALFKK 448
Query: 137 R 137
+
Sbjct: 449 K 449
>gi|456064437|ref|YP_007503407.1| Sun protein [beta proteobacterium CB]
gi|455441734|gb|AGG34672.1| Sun protein [beta proteobacterium CB]
Length = 437
Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats.
Identities = 61/116 (52%), Positives = 82/116 (70%), Gaps = 4/116 (3%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ K FD+IL D PC+ SG+V R+PDIP+LRR+ DIK L IL WKMLK GG
Sbjct: 323 WWDGKAFDKILLDAPCSASGIVARHPDIPFLRREADIKALQLRQRAILEQSWKMLKAGGT 382
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
LL+VTCS++ EE EEQA F+ H D++RL++PGQ+LP + DGF+Y+LF+K
Sbjct: 383 LLYVTCSVFPEEGEEQAAWFAAEHLDALRLSAPGQILPA----ELNDGFYYALFKK 434
>gi|344173223|emb|CCA88364.1| 16S rRNA m5C967 methyltransferase,S-adenosyl-L-methionine-dependent
[Ralstonia syzygii R24]
Length = 441
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 60/129 (46%), Positives = 85/129 (65%), Gaps = 12/129 (9%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRILAD+PC+ +G+VRR+PDI WLRR D+ L+ I++ LW LKPGGK
Sbjct: 312 WWDGRPFDRILADVPCSAAGIVRRHPDIRWLRRPADLPALAALQRDIVSALWACLKPGGK 371
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQ------------DYDG 128
L++VTCS++ E E QA F +D+IRL+ PGQLLP + + D+DG
Sbjct: 372 LVYVTCSIFPTEGEAQARWFESRLQDAIRLDGPGQLLPAMPEAAGGFAPGISSLPLDHDG 431
Query: 129 FFYSLFQKR 137
F+Y++FQKR
Sbjct: 432 FYYAVFQKR 440
>gi|33594975|ref|NP_882618.1| hypothetical protein BPP0259 [Bordetella parapertussis 12822]
gi|33565051|emb|CAE40000.1| conserved hypothetical protein [Bordetella parapertussis]
Length = 474
Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 55/120 (45%), Positives = 81/120 (67%), Gaps = 3/120 (2%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FD +LAD+PCT SG+VRR+PDI WLRR D+ + + +I + LW+ + PGG+
Sbjct: 354 WWDGRPFDAVLADVPCTASGIVRRHPDIRWLRRAEDVPRTAALQARIADALWRTVAPGGR 413
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPT---VNKKQDYDGFFYSLFQKR 137
LL+VTCS++ E EQ F++ H D+ L++PGQLLP + +DGFFY+LF KR
Sbjct: 414 LLYVTCSVFPAEGREQTEAFARRHADAAPLDAPGQLLPVAIDATPQAQHDGFFYALFAKR 473
>gi|451812489|ref|YP_007448943.1| ribosomal RNA small subunit methyltransferase B [Candidatus
Kinetoplastibacterium galatii TCC219]
gi|451778391|gb|AGF49339.1| ribosomal RNA small subunit methyltransferase B [Candidatus
Kinetoplastibacterium galatii TCC219]
Length = 452
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 57/121 (47%), Positives = 86/121 (71%), Gaps = 3/121 (2%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
+++ K FD +LAD+PC+ SG+VR++PDI WLR+++DIKK KI++ LW + PGG
Sbjct: 328 KWWDGKLFDAVLADVPCSASGIVRKHPDIRWLRKESDIKKFVLRQIKIIDALWNTVAPGG 387
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQD---YDGFFYSLFQK 136
K+L+VTCS+++EE QA+ F H D+I L+SP Q+LP + +DGFFY+LF+K
Sbjct: 388 KMLYVTCSIFYEECIGQALSFLDRHSDAIFLDSPAQILPVSCNNDNIVSHDGFFYALFKK 447
Query: 137 R 137
+
Sbjct: 448 K 448
>gi|17544794|ref|NP_518196.1| RNA methyltransferase (SUN protein) [Ralstonia solanacearum
GMI1000]
gi|17427083|emb|CAD13603.1| putative rna methyltransferase (sun protein) [Ralstonia
solanacearum GMI1000]
Length = 441
Score = 129 bits (323), Expect = 5e-28, Method: Composition-based stats.
Identities = 59/129 (45%), Positives = 85/129 (65%), Gaps = 12/129 (9%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRIL D+PC+ +G+VRR+PDI WLRR D+ L+ I++ LW LKPGGK
Sbjct: 312 WWDGRPFDRILVDVPCSAAGIVRRHPDIRWLRRPADLPALAALQRDIVSALWACLKPGGK 371
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQ------------DYDG 128
L++VTCS++ E E QA F +D+IRL++PGQLLP + + D+DG
Sbjct: 372 LVYVTCSIFPTEGEAQARWFESRLQDAIRLHAPGQLLPAMPEAAGGFVPGVSSLPLDHDG 431
Query: 129 FFYSLFQKR 137
F+Y++FQKR
Sbjct: 432 FYYAVFQKR 440
>gi|299068350|emb|CBJ39574.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Ralstonia
solanacearum CMR15]
Length = 441
Score = 129 bits (323), Expect = 5e-28, Method: Composition-based stats.
Identities = 59/129 (45%), Positives = 85/129 (65%), Gaps = 12/129 (9%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRIL D+PC+ +G+VRR+PDI WLRR D+ L+ I++ LW LKPGGK
Sbjct: 312 WWDGRPFDRILVDVPCSAAGIVRRHPDIRWLRRPADLPALAALQRDIVSALWACLKPGGK 371
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQ------------DYDG 128
L++VTCS++ E E QA F +D+IRL++PGQLLP + + D+DG
Sbjct: 372 LVYVTCSIFPTEGEAQARWFESRLQDAIRLHAPGQLLPAMPEAAGGFVPGVSSLPLDHDG 431
Query: 129 FFYSLFQKR 137
F+Y++FQKR
Sbjct: 432 FYYAVFQKR 440
>gi|167579362|ref|ZP_02372236.1| sun protein [Burkholderia thailandensis TXDOH]
Length = 470
Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats.
Identities = 60/132 (45%), Positives = 85/132 (64%), Gaps = 14/132 (10%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
+++ + FDR+LAD+PC+ SG+VRR+PDI WLRR DI L +IL+ LW ++KPGG
Sbjct: 339 QWHDGRAFDRVLADVPCSASGIVRRHPDIRWLRRAADIPALVAEQRRILSALWPLVKPGG 398
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTV--------------NKKQD 125
+LL+ TCS++ EE E A F +D++RL++PGQLLP + D
Sbjct: 399 ELLYATCSIFPEEGELLARWFGDACQDAVRLDAPGQLLPQGATGGAPAAGGSDEPGRHVD 458
Query: 126 YDGFFYSLFQKR 137
+DGFFY+ FQKR
Sbjct: 459 HDGFFYARFQKR 470
>gi|163859032|ref|YP_001633330.1| hypothetical protein Bpet4711 [Bordetella petrii DSM 12804]
gi|163262760|emb|CAP45063.1| conserved hypothetical protein [Bordetella petrii]
Length = 452
Score = 128 bits (321), Expect = 8e-28, Method: Composition-based stats.
Identities = 55/114 (48%), Positives = 78/114 (68%), Gaps = 3/114 (2%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FD +LAD+PCT SG+VRR+PDI WLRR D+ + + +I + LW+ + PGG+LL+VTC
Sbjct: 338 FDAVLADVPCTASGIVRRHPDIRWLRRAPDVARTAALQARIADALWRTVAPGGRLLYVTC 397
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPT---VNKKQDYDGFFYSLFQKR 137
S++ E QA F++ H D+ RL +PGQLLP + +DGFFY+LF K+
Sbjct: 398 SVFPAEGARQAEAFARRHADAQRLEAPGQLLPVAVGATPQAQHDGFFYALFAKQ 451
>gi|451813212|ref|YP_007449665.1| ribosomal RNA small subunit methyltransferase B [Candidatus
Kinetoplastibacterium blastocrithidii TCC012E]
gi|451779181|gb|AGF50061.1| ribosomal RNA small subunit methyltransferase B [Candidatus
Kinetoplastibacterium blastocrithidii TCC012E]
Length = 450
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 87/121 (71%), Gaps = 3/121 (2%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
+++ + FD +LAD+PC+ SG+VR++PDI WLR+++DI+K KI++ LW + PGG
Sbjct: 329 KWWDGQLFDAVLADVPCSASGIVRKHPDIRWLRKESDIRKFVLKQIKIIDALWNTVAPGG 388
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQD---YDGFFYSLFQK 136
+LL+VTCS+++EE QA+ F H D+I ++SP Q+LP + D +DGFF++LF+K
Sbjct: 389 RLLYVTCSIFYEECIGQALSFLDRHNDAIFIDSPAQILPVTSDNGDCISHDGFFFALFEK 448
Query: 137 R 137
+
Sbjct: 449 K 449
>gi|167834982|ref|ZP_02461865.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
thailandensis MSMB43]
gi|424901715|ref|ZP_18325231.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
thailandensis MSMB43]
gi|390932090|gb|EIP89490.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
thailandensis MSMB43]
Length = 470
Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats.
Identities = 59/132 (44%), Positives = 86/132 (65%), Gaps = 14/132 (10%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
+++ + FDR+LAD+PC+ SG++RR+PDI WLRR DI L +IL+ LW ++KPGG
Sbjct: 339 QWHDGRPFDRVLADVPCSASGIMRRHPDIRWLRRAADIPALVAEQRRILSALWPLVKPGG 398
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPT--------------VNKKQD 125
+LL+ TCS++ +E E QA F +D++RL++PGQLLP + D
Sbjct: 399 ELLYATCSIFPDEGELQARWFGDACQDAVRLDAPGQLLPQGATGGAPAVGGSGEPGRHVD 458
Query: 126 YDGFFYSLFQKR 137
+DGFFY+ FQKR
Sbjct: 459 HDGFFYARFQKR 470
>gi|167561034|ref|ZP_02353950.1| sun protein [Burkholderia oklahomensis EO147]
Length = 470
Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats.
Identities = 61/132 (46%), Positives = 85/132 (64%), Gaps = 14/132 (10%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
+++ + FDRILAD+PC+ SG+VRR+PDI WLRR DI L +IL LW ++K GG
Sbjct: 339 QWHDGRPFDRILADVPCSASGIVRRHPDIRWLRRAADIPALVAEQRRILAALWPLVKLGG 398
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPT--------------VNKKQD 125
+LL+ TCS++ EE E QA F ++D++RL++PGQLLP + D
Sbjct: 399 ELLYATCSIFPEEGELQARWFGGAYQDAVRLDAPGQLLPQGASGGAPAVGGSSEPGRHVD 458
Query: 126 YDGFFYSLFQKR 137
+DGFFY+ FQKR
Sbjct: 459 HDGFFYARFQKR 470
>gi|421891360|ref|ZP_16322165.1| 16S rRNA m5C967 methyltransferase,S-adenosyl-L-methionine-dependent
[Ralstonia solanacearum K60-1]
gi|378963308|emb|CCF98913.1| 16S rRNA m5C967 methyltransferase,S-adenosyl-L-methionine-dependent
[Ralstonia solanacearum K60-1]
Length = 443
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 58/131 (44%), Positives = 84/131 (64%), Gaps = 14/131 (10%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRIL D+PC+ +G+VRR+PDI WLRR +D+ L+ I++ LW LKPGGK
Sbjct: 312 WWDGRPFDRILVDVPCSAAGIVRRHPDIRWLRRPSDLPALAALQRDIVSALWACLKPGGK 371
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQ--------------DY 126
L++VTCS++ E E Q F +D+IRL++PGQLLP + D+
Sbjct: 372 LVYVTCSIFPTEGEAQVRWFESRLQDAIRLHAPGQLLPATPEAAPVGGFIPGVSSLPLDH 431
Query: 127 DGFFYSLFQKR 137
DGF+Y++FQKR
Sbjct: 432 DGFYYAVFQKR 442
>gi|300705521|ref|YP_003747124.1| 16S rRNA m5c967 methyltransferase [Ralstonia solanacearum CFBP2957]
gi|299073185|emb|CBJ44543.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Ralstonia
solanacearum CFBP2957]
Length = 443
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 58/131 (44%), Positives = 84/131 (64%), Gaps = 14/131 (10%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRIL D+PC+ +G+VRR+PDI WLRR +D+ L+ I++ LW LKPGGK
Sbjct: 312 WWDGRPFDRILVDVPCSAAGIVRRHPDIRWLRRPSDLPALAALQRDIVSALWACLKPGGK 371
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQ--------------DY 126
L++VTCS++ E E Q F +D+IRL++PGQLLP + D+
Sbjct: 372 LVYVTCSIFPTEGEAQVRWFESRLQDAIRLHAPGQLLPATPEAAPVGGFVPGVSSLPLDH 431
Query: 127 DGFFYSLFQKR 137
DGF+Y++FQKR
Sbjct: 432 DGFYYAVFQKR 442
>gi|437999591|ref|YP_007183324.1| 16S rRNA (cytosine967-C5)-methyltransferase [Candidatus
Kinetoplastibacterium blastocrithidii (ex Strigomonas
culicis)]
gi|429338825|gb|AFZ83247.1| 16S rRNA (cytosine967-C5)-methyltransferase [Candidatus
Kinetoplastibacterium blastocrithidii (ex Strigomonas
culicis)]
Length = 393
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 87/121 (71%), Gaps = 3/121 (2%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
+++ + FD +LAD+PC+ SG+VR++PDI WLR+++DI+K KI++ LW + PGG
Sbjct: 272 KWWDGQLFDAVLADVPCSASGIVRKHPDIRWLRKESDIRKFVLKQIKIIDALWNTVAPGG 331
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQD---YDGFFYSLFQK 136
+LL+VTCS+++EE QA+ F H D+I ++SP Q+LP + D +DGFF++LF+K
Sbjct: 332 RLLYVTCSIFYEECIGQALSFLDRHNDAIFIDSPAQILPVTSDNGDCISHDGFFFALFEK 391
Query: 137 R 137
+
Sbjct: 392 K 392
>gi|386334939|ref|YP_006031110.1| 16S rRNA m5c967 methyltransferase [Ralstonia solanacearum Po82]
gi|334197389|gb|AEG70574.1| 16S rRNA m5c967 methyltransferase [Ralstonia solanacearum Po82]
Length = 443
Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats.
Identities = 58/131 (44%), Positives = 84/131 (64%), Gaps = 14/131 (10%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRIL D+PC+ +G+VRR+PDI WLRR D+ L+ I++ LW LKPGGK
Sbjct: 312 WWDGRPFDRILVDVPCSAAGIVRRHPDIRWLRRPADLPALAALQRDIVSALWACLKPGGK 371
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQ--------------DY 126
L++VTCS++ E E Q F +D+IRL++PGQLLP + + D+
Sbjct: 372 LVYVTCSIFPTEGEAQVRWFESRLQDAIRLHAPGQLLPAMPEAAPVGGFVPGVSSLPLDH 431
Query: 127 DGFFYSLFQKR 137
DGF+Y++FQKR
Sbjct: 432 DGFYYAVFQKR 442
>gi|365097363|ref|ZP_09331508.1| 16S rRNA methyltransferase B [Acidovorax sp. NO-1]
gi|363413376|gb|EHL20574.1| 16S rRNA methyltransferase B [Acidovorax sp. NO-1]
Length = 441
Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats.
Identities = 56/119 (47%), Positives = 81/119 (68%), Gaps = 9/119 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FD IL D PCT SG+VRR+PD+ WLRR++DI +L++ ++L LW +L+PGG+LL+ TC
Sbjct: 321 FDAILLDAPCTASGIVRRHPDVRWLRRESDIAQLARLQARLLAALWPLLRPGGRLLYCTC 380
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQ---------DYDGFFYSLFQK 136
S++ EE +EQ F ++ D+ L SPG L+P + K+ D+DGFFY+L QK
Sbjct: 381 SVFREEGDEQVQTFLAHNTDATLLPSPGHLIPGNDDKRGAVPDNQSGDHDGFFYALLQK 439
>gi|260222513|emb|CBA32151.1| Ribosomal RNA small subunit methyltransferase B [Curvibacter
putative symbiont of Hydra magnipapillata]
Length = 457
Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats.
Identities = 58/120 (48%), Positives = 81/120 (67%), Gaps = 9/120 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FD +L D PCT SG+VRR+PDI WLRR++D+ +L+ K+L LW LKPGGKLL+ TC
Sbjct: 336 FDYVLLDAPCTASGIVRRHPDIRWLRRESDVLQLAMEQKKLLAALWSTLKPGGKLLYCTC 395
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTV---------NKKQDYDGFFYSLFQKR 137
S++ E +Q F +++KD++ L SPG LLP N+ D+DGFFY+LF+K+
Sbjct: 396 SIFRAEGADQVKSFLESNKDAVLLPSPGHLLPQSGQSGQDVADNQHGDHDGFFYALFEKK 455
>gi|421899594|ref|ZP_16329957.1| rna methyltransferase (sun protein) [Ralstonia solanacearum MolK2]
gi|206590800|emb|CAQ56412.1| rna methyltransferase (sun protein) [Ralstonia solanacearum MolK2]
Length = 418
Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats.
Identities = 58/131 (44%), Positives = 84/131 (64%), Gaps = 14/131 (10%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRIL D+PC+ +G+VRR+PDI WLRR D+ L+ I++ LW LKPGGK
Sbjct: 287 WWDGRPFDRILVDVPCSAAGIVRRHPDIRWLRRPADLPALAVLQRDIVSALWACLKPGGK 346
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQ--------------DY 126
L++VTCS++ E E Q F +D+IRL++PGQLLP + + D+
Sbjct: 347 LVYVTCSIFPTEGEAQVRWFESRLQDAIRLHAPGQLLPAMPEAAPVGGFVPGVSSLPLDH 406
Query: 127 DGFFYSLFQKR 137
DGF+Y++FQKR
Sbjct: 407 DGFYYAVFQKR 417
>gi|83748628|ref|ZP_00945646.1| 16S rRNA m(5)C 967 methyltransferase [Ralstonia solanacearum UW551]
gi|207741954|ref|YP_002258346.1| rna methyltransferase (sun protein) [Ralstonia solanacearum
IPO1609]
gi|83724672|gb|EAP71832.1| 16S rRNA m(5)C 967 methyltransferase [Ralstonia solanacearum UW551]
gi|206593340|emb|CAQ60267.1| probable rna methyltransferase (sun protein) [Ralstonia
solanacearum IPO1609]
Length = 443
Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats.
Identities = 58/131 (44%), Positives = 84/131 (64%), Gaps = 14/131 (10%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRIL D+PC+ +G+VRR+PDI WLRR D+ L+ I++ LW LKPGGK
Sbjct: 312 WWDGRPFDRILVDVPCSAAGIVRRHPDIRWLRRPADLPALAVLQRDIVSALWACLKPGGK 371
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQ--------------DY 126
L++VTCS++ E E Q F +D+IRL++PGQLLP + + D+
Sbjct: 372 LVYVTCSIFPTEGEAQVRWFESRLQDAIRLHAPGQLLPAMPEAAPVGGFVPGVSSLPLDH 431
Query: 127 DGFFYSLFQKR 137
DGF+Y++FQKR
Sbjct: 432 DGFYYAVFQKR 442
>gi|348589424|ref|YP_004873886.1| ribosomal RNA small subunit methyltransferase B [Taylorella
asinigenitalis MCE3]
gi|347973328|gb|AEP35863.1| Ribosomal RNA small subunit methyltransferase B [Taylorella
asinigenitalis MCE3]
Length = 430
Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats.
Identities = 63/116 (54%), Positives = 79/116 (68%), Gaps = 5/116 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FD ILAD+PCTGSGVVRR+PDI WLR+ DI K + KIL NLWKMLK GG
Sbjct: 319 WWDGRMFDAILADVPCTGSGVVRRHPDIKWLRKSEDISKTVQLQRKILINLWKMLKSGGH 378
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
LL+VTCS++ EE E QA F+ + RL + G LLP + DGFFY+LF+K
Sbjct: 379 LLYVTCSVFQEEGELQAAYFTSILDGAERLPALGHLLPP-----EQDGFFYALFKK 429
>gi|424777247|ref|ZP_18204213.1| methyltransferase [Alcaligenes sp. HPC1271]
gi|422887577|gb|EKU29978.1| methyltransferase [Alcaligenes sp. HPC1271]
Length = 434
Score = 124 bits (312), Expect = 9e-27, Method: Composition-based stats.
Identities = 56/119 (47%), Positives = 80/119 (67%), Gaps = 2/119 (1%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
+++ + FD ILAD+PCT SG+VRR+PDI WLRR++DI ++ IL+ LW L+PGG
Sbjct: 314 QWWDGQPFDAILADVPCTASGIVRRHPDIRWLRRESDIADTARLQSSILDALWSTLRPGG 373
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQ--DYDGFFYSLFQK 136
L+ TCS++ E E+Q F H ++ L+SPGQ+LP V + D DGFFY+LF +
Sbjct: 374 HFLYSTCSIFPAEGEQQVEAFLARHPEAQLLDSPGQILPGVAGRSLADGDGFFYALFTR 432
>gi|399117236|emb|CCG20050.1| ribosomal RNA small subunit methyltransferase [Taylorella
asinigenitalis 14/45]
Length = 430
Score = 124 bits (312), Expect = 9e-27, Method: Composition-based stats.
Identities = 62/116 (53%), Positives = 79/116 (68%), Gaps = 5/116 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FD ILAD+PCTGSGVVRR+PDI WLR+ DI K + KI+ NLWKMLK GG
Sbjct: 319 WWDGRMFDAILADVPCTGSGVVRRHPDIKWLRKSEDISKTVQLQRKIIINLWKMLKSGGH 378
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
LL+VTCS++ EE E QA F+ + RL + G LLP + DGFFY+LF+K
Sbjct: 379 LLYVTCSVFQEEGELQAAYFTSILDGAERLPALGHLLPP-----EQDGFFYALFKK 429
>gi|121606520|ref|YP_983849.1| sun protein [Polaromonas naphthalenivorans CJ2]
gi|120595489|gb|ABM38928.1| sun protein [Polaromonas naphthalenivorans CJ2]
Length = 450
Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats.
Identities = 53/127 (41%), Positives = 83/127 (65%), Gaps = 9/127 (7%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + +D IL D PCT SG+VRR+PD+ WLRR DI +L++ ++L LW +L+PGG+
Sbjct: 323 WWDGRLYDGILLDAPCTASGIVRRHPDVRWLRRPTDIAQLAQIQARLLATLWPLLQPGGR 382
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPT---------VNKKQDYDGFFY 131
L++ TCS++ E E+Q F+ H D++ L SPG LLP N +++DGF+Y
Sbjct: 383 LVYCTCSVFRAEGEQQVQAFAARHTDALLLPSPGHLLPQGGAGAAVFPDNLMREHDGFYY 442
Query: 132 SLFQKRK 138
+L +KR+
Sbjct: 443 ALLEKRR 449
>gi|440502957|gb|AGC09556.1| Sun protein [uncultured organism]
Length = 489
Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats.
Identities = 57/122 (46%), Positives = 83/122 (68%), Gaps = 9/122 (7%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
R++ + FD ILAD+PC+GSGV RR+PDI WLRR D+ ++ +IL+ LW +LKPGG
Sbjct: 370 RWWDGRPFDAILADVPCSGSGVARRHPDIKWLRRTEDVAGFAQQQREILDGLWPLLKPGG 429
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQ-----LLPTVNKKQDYDGFFYSLF 134
+LL+ TCS++ EE+EEQ +F K H+D+ + G+ LLP + +DGFFY+L
Sbjct: 430 RLLYATCSIFAEENEEQVRVFVKRHRDARLVPLDGERETLALLP----DETHDGFFYALL 485
Query: 135 QK 136
+K
Sbjct: 486 RK 487
>gi|237749113|ref|ZP_04579593.1| tRNA and rRNA cytosine-C5-methylase [Oxalobacter formigenes OXCC13]
gi|229380475|gb|EEO30566.1| tRNA and rRNA cytosine-C5-methylase [Oxalobacter formigenes OXCC13]
Length = 443
Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats.
Identities = 69/132 (52%), Positives = 96/132 (72%), Gaps = 6/132 (4%)
Query: 6 IESSDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSC 65
I + D +KK ++ FD ILAD+PCT SG++RR+PDI WLRR D K+L+ S
Sbjct: 318 IMAGDASKKN-----WWDGNAFDCILADVPCTASGIIRRHPDIRWLRRPEDAKELAVISA 372
Query: 66 KILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQD 125
+IL+NLW++LKPGGKLL TCS+W ESE QA F+K + ++ RL++PGQL PT +K +D
Sbjct: 373 RILDNLWELLKPGGKLLLATCSVWPLESEWQADAFAKRN-NAARLDAPGQLFPTSDKLKD 431
Query: 126 YDGFFYSLFQKR 137
+DG FY+LF+K+
Sbjct: 432 HDGLFYALFKKQ 443
>gi|398805421|ref|ZP_10564396.1| ribosomal RNA small subunit methyltransferase RsmB [Polaromonas sp.
CF318]
gi|398091632|gb|EJL82067.1| ribosomal RNA small subunit methyltransferase RsmB [Polaromonas sp.
CF318]
Length = 448
Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats.
Identities = 57/125 (45%), Positives = 81/125 (64%), Gaps = 9/125 (7%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + +D IL D PCT SG+VRR+PD+ WLRR DI +L+ K+L LW +LKPGG+
Sbjct: 321 WWDGRLYDGILLDAPCTASGIVRRHPDVRWLRRPTDIAQLAAIQAKLLQTLWPLLKPGGR 380
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLP------TV---NKKQDYDGFFY 131
LL+ TCS++ E EEQ F +H D++ SPG LLP TV N +++DGF+Y
Sbjct: 381 LLYCTCSVFRAEGEEQIQTFLTHHTDALLRPSPGHLLPQSGVEATVFPDNLMREHDGFYY 440
Query: 132 SLFQK 136
+L +K
Sbjct: 441 ALLEK 445
>gi|222834339|gb|EEE72816.1| predicted protein [Populus trichocarpa]
Length = 359
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 80/124 (64%), Gaps = 9/124 (7%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
+ FD IL D PCT SG+VRR PD+ WLRR++D+++L++ ++L+ LW +L+PGG+LL+
Sbjct: 236 GQRFDAILLDAPCTASGIVRRQPDVRWLRRESDVRQLAEIQARLLDTLWPLLQPGGRLLY 295
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLP---------TVNKKQDYDGFFYSLF 134
TCS++ EE E Q F + ++ L +PG L+P N D+DGFFY+L
Sbjct: 296 CTCSVFREEGEAQVQAFVTRNSEARTLAAPGHLIPGKADKAGMLADNALGDHDGFFYALL 355
Query: 135 QKRK 138
QK +
Sbjct: 356 QKTR 359
>gi|334132229|ref|ZP_08505990.1| Putative 16S rRNA methyltransferase B [Methyloversatilis
universalis FAM5]
gi|333442875|gb|EGK70841.1| Putative 16S rRNA methyltransferase B [Methyloversatilis
universalis FAM5]
Length = 416
Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 59/142 (41%), Positives = 85/142 (59%), Gaps = 12/142 (8%)
Query: 2 IAGEIESSDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLS 61
+ G I D + + ++ + FDRILAD+PC+ SGVVRR+PD WLRR DI + +
Sbjct: 281 LPGRIAVGDAARPDD----WWDGRPFDRILADVPCSASGVVRRHPDAKWLRRPKDIAQFA 336
Query: 62 KYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPG----QLL 117
IL+ LW++L PGGKLL+ TCS++ E+++Q F+ H D RL G LL
Sbjct: 337 SQQRAILDALWRVLAPGGKLLYATCSVFRAENQDQVAAFAARHPDCRRLTLSGAPDLSLL 396
Query: 118 PTVNKKQDYDGFFYSLFQKRKE 139
PT ++DGF+Y+L QK +
Sbjct: 397 PTA----EHDGFYYALLQKAAD 414
>gi|333912119|ref|YP_004485851.1| sun protein [Delftia sp. Cs1-4]
gi|333742319|gb|AEF87496.1| sun protein [Delftia sp. Cs1-4]
Length = 465
Score = 122 bits (305), Expect = 7e-26, Method: Composition-based stats.
Identities = 53/121 (43%), Positives = 79/121 (65%), Gaps = 9/121 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FD IL D PCT SG+VRR PD+ WLRR++D+++L++ ++L+ LW +L+PGG+LL+ TC
Sbjct: 345 FDAILLDAPCTASGIVRRQPDVRWLRRESDVRQLAEIQARLLDTLWPLLQPGGRLLYCTC 404
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQ---------DYDGFFYSLFQKR 137
S++ EE E Q F + ++ L +PG L+P K D+DGFFY+L QK
Sbjct: 405 SVFREEGEAQVQAFVTRNSEARTLAAPGHLIPGKADKAGMLADNALGDHDGFFYALLQKT 464
Query: 138 K 138
+
Sbjct: 465 R 465
>gi|160895962|ref|YP_001561544.1| sun protein [Delftia acidovorans SPH-1]
gi|160361546|gb|ABX33159.1| sun protein [Delftia acidovorans SPH-1]
Length = 462
Score = 122 bits (305), Expect = 7e-26, Method: Composition-based stats.
Identities = 53/121 (43%), Positives = 79/121 (65%), Gaps = 9/121 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FD IL D PCT SG+VRR PD+ WLRR++D+++L++ ++L+ LW +L+PGG+LL+ TC
Sbjct: 342 FDAILLDAPCTASGIVRRQPDVRWLRRESDVRQLAEIQARLLDTLWPLLQPGGRLLYCTC 401
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQ---------DYDGFFYSLFQKR 137
S++ EE E Q F + ++ L +PG L+P K D+DGFFY+L QK
Sbjct: 402 SVFREEGEAQVQAFVTRNSEARTLAAPGHLIPGKADKAGMLADNALGDHDGFFYALLQKT 461
Query: 138 K 138
+
Sbjct: 462 R 462
>gi|241765995|ref|ZP_04763917.1| Fmu (Sun) domain protein [Acidovorax delafieldii 2AN]
gi|241364022|gb|EER59271.1| Fmu (Sun) domain protein [Acidovorax delafieldii 2AN]
Length = 404
Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 77/119 (64%), Gaps = 9/119 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FD IL D PCT SG+VRR+PD+ WLRR+ DI +L+ ++L LW +L+PGG+LL+ TC
Sbjct: 284 FDAILLDAPCTASGIVRRHPDVRWLRREADIAQLAVQQARLLKALWPLLRPGGRLLYCTC 343
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTV---------NKKQDYDGFFYSLFQK 136
S++ EE + Q F ++ D+ L SPG L+P + N D+DGFFY+L QK
Sbjct: 344 SVFREEGDAQVQSFLAHNTDARLLPSPGHLIPGIANNGEVVRDNAPGDHDGFFYALLQK 402
>gi|429462983|ref|YP_007184446.1| 16S rRNA (cytosine967-C5)-methyltransferase [Candidatus
Kinetoplastibacterium crithidii (ex Angomonas deanei
ATCC 30255)]
gi|451811765|ref|YP_007448220.1| ribosomal RNA small subunit methyltransferase B [Candidatus
Kinetoplastibacterium crithidii TCC036E]
gi|429338497|gb|AFZ82920.1| 16S rRNA (cytosine967-C5)-methyltransferase [Candidatus
Kinetoplastibacterium crithidii (ex Angomonas deanei
ATCC 30255)]
gi|451776923|gb|AGF47922.1| ribosomal RNA small subunit methyltransferase B [Candidatus
Kinetoplastibacterium crithidii TCC036E]
Length = 446
Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 85/121 (70%), Gaps = 2/121 (1%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
+++ K FD ILAD+PCT SG+VR++PDI W+++ +DI+ + I+++LWK L PGG
Sbjct: 325 QWWDGKLFDIILADVPCTSSGIVRKHPDIRWIKKNDDIETVRLIQSGIMDSLWKTLVPGG 384
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNK--KQDYDGFFYSLFQKR 137
+ L+ TCS++ EE Q ++F + H D++ L+SPGQ+LPT++ +DGFF++L K
Sbjct: 385 RFLYSTCSIFPEECIYQILLFLEKHNDALLLDSPGQILPTISNVLTVGHDGFFFALLTKA 444
Query: 138 K 138
K
Sbjct: 445 K 445
>gi|393759063|ref|ZP_10347882.1| methyltransferase [Alcaligenes faecalis subsp. faecalis NCIB 8687]
gi|393162959|gb|EJC63014.1| methyltransferase [Alcaligenes faecalis subsp. faecalis NCIB 8687]
Length = 449
Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats.
Identities = 55/119 (46%), Positives = 80/119 (67%), Gaps = 2/119 (1%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
+++ + FD ILAD+PCT SG+VRR+PDI WLRR++DI ++ IL+ LW L+ GG
Sbjct: 329 QWWDGQPFDAILADVPCTASGIVRRHPDIRWLRRESDIADTARLQSSILDALWSTLRAGG 388
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQ--DYDGFFYSLFQK 136
LL+ TCS++ E ++Q F H ++ L+SPGQ+LP V + D DGFFY+LF +
Sbjct: 389 HLLYSTCSIFPAEGQQQVEAFLARHPEAQLLDSPGQILPGVAGRSLADGDGFFYALFTR 447
>gi|56477026|ref|YP_158615.1| tRNA and rRNA cytosine-C5-methylase sun [Aromatoleum aromaticum
EbN1]
gi|56313069|emb|CAI07714.1| tRNA and rRNA cytosine-C5-methylases sun [Aromatoleum aromaticum
EbN1]
Length = 447
Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats.
Identities = 53/118 (44%), Positives = 77/118 (65%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRILAD+PC+ SGV RR+PDI WLRR+ D+++ + I++ LW L PGG+
Sbjct: 330 WWDGRPFDRILADVPCSASGVARRHPDIKWLRRREDVRRFAAQQADIVDALWPTLAPGGR 389
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKRK 138
+L+VTCS++ EE+ Q S H D RL G+L + D+DGFFY+L KR+
Sbjct: 390 MLYVTCSVFNEENTAQIARLSARHPDLERLEIDGRLERQLLPATDHDGFFYALLGKRR 447
>gi|351733136|ref|ZP_08950827.1| 16S rRNA methyltransferase B [Acidovorax radicis N35]
Length = 351
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 78/125 (62%), Gaps = 9/125 (7%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
FD IL D PCT SG+VRR+PD+ WLRR++DI +L+ ++L LW +L+PGG+LL+
Sbjct: 227 GALFDAILLDAPCTASGIVRRHPDVRWLRRESDIAQLATLQARLLKTLWPLLRPGGRLLY 286
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLP---------TVNKKQDYDGFFYSLF 134
TCS++ E + Q F ++ D+ L SPG L+P N+ D+DGFFY+L
Sbjct: 287 CTCSVFRAEGDAQVQTFLAHNTDAQLLPSPGHLIPGNGDKPGAVPDNQPGDHDGFFYALL 346
Query: 135 QKRKE 139
QK +
Sbjct: 347 QKSPQ 351
>gi|296137329|ref|YP_003644571.1| sun protein [Thiomonas intermedia K12]
gi|295797451|gb|ADG32241.1| sun protein [Thiomonas intermedia K12]
Length = 457
Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 59/127 (46%), Positives = 80/127 (62%), Gaps = 11/127 (8%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRIL D PC+ SG+ RR+PDI WLRR DI L+ +L+ LW +L+PGGK
Sbjct: 329 WWDGQPFDRILLDAPCSASGIARRHPDIRWLRRAADIPALAATQAVLLDALWPLLRPGGK 388
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLL---PTVNKKQD--------YDGF 129
LL+VTCS++ +E EQA F H D+I +PGQLL P ++ +D DGF
Sbjct: 389 LLYVTCSVFPQEGVEQARAFLARHADAIASPAPGQLLPQEPAFDQTRDDPGAARHSQDGF 448
Query: 130 FYSLFQK 136
FY+LF K
Sbjct: 449 FYALFTK 455
>gi|237654726|ref|YP_002891040.1| sun protein [Thauera sp. MZ1T]
gi|237625973|gb|ACR02663.1| sun protein [Thauera sp. MZ1T]
Length = 435
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 58/121 (47%), Positives = 79/121 (65%), Gaps = 8/121 (6%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRILAD+PC+ SGVVRR+PDI WLRR +DI + +IL LW+ L PGG
Sbjct: 318 WWDGRPFDRILADVPCSASGVVRRHPDIKWLRRDSDIANFAAQQAEILEALWRTLAPGGT 377
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRL----NSPGQLLPTVNKKQDYDGFFYSLFQK 136
+L+VTCS++ EE+ Q F H D+ RL +S QLLP D+DGF+Y+L +K
Sbjct: 378 MLYVTCSVFDEENAGQVARFCVRHADAERLPIRGSSDLQLLPCA----DHDGFYYALLRK 433
Query: 137 R 137
R
Sbjct: 434 R 434
>gi|389871020|ref|YP_006378439.1| methyltransferase [Advenella kashmirensis WT001]
gi|388536269|gb|AFK61457.1| methyltransferase [Advenella kashmirensis WT001]
Length = 492
Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats.
Identities = 56/117 (47%), Positives = 81/117 (69%), Gaps = 2/117 (1%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FD ILAD+PCT SG+VRR+PDI WLR++ DI +I++ LW+ LKPGG
Sbjct: 377 WWDGQPFDAILADVPCTASGIVRRHPDIRWLRQEQDIVDTVALQRRIVSALWQTLKPGGT 436
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
LL+VTCS++ +E EQ + + ++ L SPGQLLP + Q++DGFFYSL +K+
Sbjct: 437 LLYVTCSVFPQEGIEQDQWMQQTLEGAVALPSPGQLLP--GQGQEHDGFFYSLLRKQ 491
>gi|420247907|ref|ZP_14751289.1| ribosomal RNA small subunit methyltransferase RsmB, partial
[Burkholderia sp. BT03]
gi|398069795|gb|EJL61127.1| ribosomal RNA small subunit methyltransferase RsmB, partial
[Burkholderia sp. BT03]
Length = 449
Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats.
Identities = 53/96 (55%), Positives = 71/96 (73%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRILAD+PC+ SG+VRR+ DI WLRR +DI L + +IL LW ++K GG+LL+VTC
Sbjct: 346 FDRILADVPCSASGIVRRHADIRWLRRASDIPALVEEQRRILEALWPLVKTGGELLYVTC 405
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNK 122
S++ EE E QA F H D++RL++PGQLLP V +
Sbjct: 406 SIFPEEGELQAQWFGNQHADAVRLDAPGQLLPAVAR 441
>gi|91790269|ref|YP_551221.1| sun protein [Polaromonas sp. JS666]
gi|91699494|gb|ABE46323.1| sun protein [Polaromonas sp. JS666]
Length = 445
Score = 119 bits (297), Expect = 5e-25, Method: Composition-based stats.
Identities = 57/145 (39%), Positives = 88/145 (60%), Gaps = 13/145 (8%)
Query: 2 IAGEIESSDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLS 61
+ IE +D + + ++ + +D IL D PCT SG+VRR+PD+ WLRR DI +L+
Sbjct: 303 LQAHIEVADAGRPQD----WWDGQPYDGILLDAPCTASGIVRRHPDVRWLRRPTDIAQLA 358
Query: 62 KYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLP--- 118
+L LW +LKPGG+LL+ TCS++ E + Q F +H D++ + SPG LLP
Sbjct: 359 GIQAHLLQALWPLLKPGGRLLYCTCSVFRAEGDNQIQTFVAHHTDALLMPSPGHLLPQSG 418
Query: 119 ---TV---NKKQDYDGFFYSLFQKR 137
TV N +++DGF+Y++ +KR
Sbjct: 419 AEATVFPDNLMREHDGFYYAILEKR 443
>gi|74316034|ref|YP_313774.1| Fmu, rRNA SAM-dependent methyltransferase [Thiobacillus
denitrificans ATCC 25259]
gi|74055529|gb|AAZ95969.1| Fmu, rRNA SAM-dependent methyltransferase [Thiobacillus
denitrificans ATCC 25259]
Length = 418
Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats.
Identities = 57/122 (46%), Positives = 79/122 (64%), Gaps = 10/122 (8%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRILAD+PC+ SGVVRRNPDI WLRR DI + + I+ LW++L+PGG
Sbjct: 300 WWDGRPFDRILADVPCSASGVVRRNPDIKWLRRPGDIAQFAAQQAVIVEALWRLLRPGGT 359
Query: 81 LLFVTCSLWFEESEEQAIIFSKNH-KDSIRLNSP-----GQLLPTVNKKQDYDGFFYSLF 134
LL+ TCS++ EE+E Q F H +D+ R + P G LLP ++DGFFY+L
Sbjct: 360 LLYATCSIFHEENEGQVQAFLARHVQDAERCSLPEPLSDGSLLPDA----EHDGFFYALL 415
Query: 135 QK 136
+K
Sbjct: 416 RK 417
>gi|337281228|ref|YP_004620700.1| 16S rRNA m5C967 methyltransferase [Ramlibacter tataouinensis
TTB310]
gi|334732305|gb|AEG94681.1| 16S rRNA m5C967 methyltransferase-like protein [Ramlibacter
tataouinensis TTB310]
Length = 449
Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats.
Identities = 52/128 (40%), Positives = 81/128 (63%), Gaps = 9/128 (7%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FD IL D PCT SG+VRR+PD+ WLRR+ D+ +L+ ++L+ LW +L+PGG+
Sbjct: 316 WWDGQPFDGILLDAPCTASGIVRRHPDVRWLRREADVARLAALQARLLDALWPLLRPGGR 375
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTV---------NKKQDYDGFFY 131
LL+ TCS++ E E Q F ++ D+ +PG L+P N D+DGFFY
Sbjct: 376 LLYCTCSVFRAEGEAQIQSFVAHNTDAALRPAPGHLIPQTGANPDPLRDNLPGDHDGFFY 435
Query: 132 SLFQKRKE 139
+L +KR++
Sbjct: 436 ALLEKRRQ 443
>gi|119900274|ref|YP_935487.1| Sun protein [Azoarcus sp. BH72]
gi|119672687|emb|CAL96601.1| Sun protein [Azoarcus sp. BH72]
Length = 426
Score = 118 bits (295), Expect = 9e-25, Method: Composition-based stats.
Identities = 55/114 (48%), Positives = 75/114 (65%), Gaps = 8/114 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRILAD+PC+ SGVVRR+PDI WLRR DI + +IL+ LW+ L+PGG +L+ TC
Sbjct: 315 FDRILADVPCSASGVVRRHPDIKWLRRDEDIAGFAAQQAEILDALWRTLRPGGTMLYATC 374
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPGQ----LLPTVNKKQDYDGFFYSLFQK 136
S++ EE+ Q F H D++ ++ GQ LLP D+DGFFY+L +K
Sbjct: 375 SVFEEENAGQVAAFLARHADALSVSIDGQPHLCLLPDA----DHDGFFYALLRK 424
>gi|358639579|dbj|BAL26876.1| putative tRNA and rRNA cytosine-C5-methylase [Azoarcus sp. KH32C]
Length = 426
Score = 118 bits (295), Expect = 9e-25, Method: Composition-based stats.
Identities = 51/116 (43%), Positives = 76/116 (65%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRILAD+PC+ SGV RR+PDI WLRR DI++ + +IL+ LW L PGG+
Sbjct: 309 WWGGRPFDRILADVPCSASGVARRHPDIKWLRRPEDIRRFAAQQAEILDALWPTLAPGGR 368
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
+L+VTCS++ +E+ Q F H D+ R++ GQ D+DGF+Y+L +K
Sbjct: 369 MLYVTCSVFDDENARQIAAFCARHNDARRIDIDGQPDRQFLPDADHDGFYYALVEK 424
>gi|297537409|ref|YP_003673178.1| sun protein [Methylotenera versatilis 301]
gi|297256756|gb|ADI28601.1| sun protein [Methylotenera versatilis 301]
Length = 439
Score = 118 bits (295), Expect = 9e-25, Method: Composition-based stats.
Identities = 59/126 (46%), Positives = 80/126 (63%), Gaps = 18/126 (14%)
Query: 25 KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 84
+ FDRILAD+PC+ SG+VRR+ DI WLRR+ DI ++ KIL NLW+ML GGKLL+V
Sbjct: 317 QLFDRILADVPCSASGIVRRHVDIKWLRREADIASFTRQQAKILANLWQMLAKGGKLLYV 376
Query: 85 TCSLWFEESEEQAIIFSKNHKDSIRL--------------NSPGQLLPTVNKKQDYDGFF 130
TCS++ EE++ Q F +N+ D+ +L GQL+PT +DGFF
Sbjct: 377 TCSVFNEENQGQVDNFLQNNADATQLPFALPDNYAAAEITQINGQLIPT----NAHDGFF 432
Query: 131 YSLFQK 136
Y+L QK
Sbjct: 433 YALLQK 438
>gi|224826197|ref|ZP_03699300.1| sun protein [Pseudogulbenkiania ferrooxidans 2002]
gi|347538126|ref|YP_004845550.1| 16S rRNA methyltransferase B [Pseudogulbenkiania sp. NH8B]
gi|224601834|gb|EEG08014.1| sun protein [Pseudogulbenkiania ferrooxidans 2002]
gi|345641303|dbj|BAK75136.1| 16S rRNA methyltransferase B [Pseudogulbenkiania sp. NH8B]
Length = 416
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/111 (47%), Positives = 76/111 (68%), Gaps = 5/111 (4%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRILAD+PC+ SGVVRR+PDI WLRR D +L++ +++ LW +L GGK+L+ TC
Sbjct: 311 FDRILADVPCSASGVVRRHPDIKWLRRPGDFAELARQQSALVDALWPLLASGGKMLYATC 370
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
S++ EE+ EQ F H D++ L+ QLLP+ + +DGF+Y+L KR
Sbjct: 371 SIFPEENREQLAAFLARHADAVCLDDQ-QLLPS----EQHDGFYYALLAKR 416
>gi|30249919|ref|NP_841989.1| sun; rRNA methylase [Nitrosomonas europaea ATCC 19718]
gi|30180956|emb|CAD85883.1| sun; rRNA methylase [Nitrosomonas europaea ATCC 19718]
Length = 426
Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats.
Identities = 57/122 (46%), Positives = 80/122 (65%), Gaps = 10/122 (8%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + +DRILAD+PC+ SGV+ R+PDI WLRR DI ++ ILN LW +L+ GGK
Sbjct: 308 WWDGQLYDRILADVPCSASGVISRHPDIKWLRRPEDIDHFAQTQTAILNGLWPLLQRGGK 367
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSP------GQLLPTVNKKQDYDGFFYSLF 134
LL+VTCS++ EE++ A F H+D+ RL GQLLP + +DGFFY+LF
Sbjct: 368 LLYVTCSVFNEENDAVADKFLTTHEDASRLPCSHGMLGRGQLLPGSH----HDGFFYALF 423
Query: 135 QK 136
+K
Sbjct: 424 RK 425
>gi|253997546|ref|YP_003049610.1| sun protein [Methylotenera mobilis JLW8]
gi|253984225|gb|ACT49083.1| sun protein [Methylotenera mobilis JLW8]
Length = 432
Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 63/148 (42%), Positives = 88/148 (59%), Gaps = 26/148 (17%)
Query: 1 MIAGEIESSDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL 60
+IAG+ S+D +Y K FDRILAD+PCT SG+VRR+ DI WLRR+ D+
Sbjct: 298 VIAGDAGSAD----------WYDGKPFDRILADVPCTASGIVRRHVDIKWLRRETDVASF 347
Query: 61 SKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL---------- 110
KIL +LW+ML GGKLL+VTCS++ EE++ Q F + + D+ +L
Sbjct: 348 VAQQAKILPSLWQMLAKGGKLLYVTCSVFKEENQAQIDQFLQKNADAQQLPIEQALAQYN 407
Query: 111 --NSPGQLLPTVNKKQDYDGFFYSLFQK 136
+ GQL+P+ +DGFFY+L QK
Sbjct: 408 VAHIQGQLIPS----NSHDGFFYALLQK 431
>gi|288941789|ref|YP_003444029.1| sun protein [Allochromatium vinosum DSM 180]
gi|288897161|gb|ADC62997.1| sun protein [Allochromatium vinosum DSM 180]
Length = 449
Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 56/120 (46%), Positives = 75/120 (62%), Gaps = 13/120 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D+PC+ +GV+RR+PDI WLRR +DI L+ +IL+ +W +L+PGG+LL+ TC
Sbjct: 330 FDRILLDVPCSATGVIRRHPDIKWLRRPDDIAALAATQSRILDAIWPLLRPGGRLLYATC 389
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPG----------QLLPTVNKKQDYDGFFYSLFQK 136
SL EE+E Q F D+ L+ P QLLPT Q +DGFFY+L K
Sbjct: 390 SLLAEENERQVDAFLARRTDARALDLPTDWGRPRPPGRQLLPTT---QGHDGFFYALLAK 446
>gi|407937150|ref|YP_006852791.1| 16S rRNA methyltransferase B [Acidovorax sp. KKS102]
gi|407894944|gb|AFU44153.1| 16S rRNA methyltransferase B [Acidovorax sp. KKS102]
Length = 442
Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 54/122 (44%), Positives = 76/122 (62%), Gaps = 9/122 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FD IL D PCT SG+VRR+PD+ WLRR++DI +L+ +L LW +L+PGG+LL+ TC
Sbjct: 321 FDAILLDAPCTASGIVRRHPDVRWLRRESDIAQLATLQAALLKALWPLLRPGGRLLYCTC 380
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKK---------QDYDGFFYSLFQKR 137
S++ E + Q F ++ D+ L SPG L+P K D+DGFFY+L QK
Sbjct: 381 SVFRAEGDAQVQTFLAHNTDARLLPSPGHLIPGNADKGWAVPDNLIGDHDGFFYALLQKS 440
Query: 138 KE 139
+
Sbjct: 441 AQ 442
>gi|89902354|ref|YP_524825.1| sun protein [Rhodoferax ferrireducens T118]
gi|89347091|gb|ABD71294.1| sun protein [Rhodoferax ferrireducens T118]
Length = 454
Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats.
Identities = 54/126 (42%), Positives = 79/126 (62%), Gaps = 9/126 (7%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FD IL D PCT SG+VRR+PD+ WLRR++DI +L ++L LW++LKPGG+
Sbjct: 327 WWDGQLFDAILLDAPCTASGIVRRHPDVRWLRRESDIAQLVATQARLLKALWQVLKPGGR 386
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTV---------NKKQDYDGFFY 131
LL+ TCS++ E Q F ++ ++ L SPG LLP N D+DGF+Y
Sbjct: 387 LLYCTCSVFRAEGGNQIQTFLAHNTEASLLPSPGHLLPVNRVTGDAVPDNPIGDHDGFYY 446
Query: 132 SLFQKR 137
+L +KR
Sbjct: 447 ALLEKR 452
>gi|329118891|ref|ZP_08247586.1| ribosomal RNA small subunit methyltransferase B [Neisseria
bacilliformis ATCC BAA-1200]
gi|327464919|gb|EGF11209.1| ribosomal RNA small subunit methyltransferase B [Neisseria
bacilliformis ATCC BAA-1200]
Length = 441
Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats.
Identities = 55/117 (47%), Positives = 78/117 (66%), Gaps = 5/117 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y + FD +LAD+PCT SGVVRRNPDI WLRR D K ++ +L+ LW ++KPGG+
Sbjct: 329 WYDGRPFDAVLADVPCTASGVVRRNPDIKWLRRPGDALKTARQQESLLDALWTVVKPGGR 388
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
+LF TCSL+ EE++ Q F + H D+ +P LLPT + DGF+Y+L +K+
Sbjct: 389 MLFATCSLFTEENDLQLQNFLRRHADAA-CAAPQTLLPTPKQ----DGFYYALIRKQ 440
>gi|187476742|ref|YP_784766.1| ribosomal RNA small subunit methyltransferase [Bordetella avium
197N]
gi|115421328|emb|CAJ47833.1| ribosomal RNA small subunit methyltransferase [Bordetella avium
197N]
Length = 442
Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats.
Identities = 57/121 (47%), Positives = 83/121 (68%), Gaps = 3/121 (2%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ K FD +LAD+PCT SG+VRR+PDI WLRR D+ + + +I + LW+++ PGG
Sbjct: 322 WWDGKPFDAVLADVPCTASGIVRRHPDIRWLRRAPDVARTAALQARIADALWRVVAPGGH 381
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPT---VNKKQDYDGFFYSLFQKR 137
LL+VTCS++ E + QA F+ H D+I L +PGQLLP ++ +DGFFY+LF KR
Sbjct: 382 LLYVTCSIFPAEGQAQAQAFAARHADAIVLPAPGQLLPVALDATPERQHDGFFYALFAKR 441
Query: 138 K 138
+
Sbjct: 442 R 442
>gi|429744970|ref|ZP_19278425.1| ribosomal RNA small subunit methyltransferase B [Neisseria sp. oral
taxon 020 str. F0370]
gi|429161629|gb|EKY04011.1| ribosomal RNA small subunit methyltransferase B [Neisseria sp. oral
taxon 020 str. F0370]
Length = 420
Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats.
Identities = 56/117 (47%), Positives = 75/117 (64%), Gaps = 5/117 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y + FD +LAD+PCT SGVVRRNPDI WLR D K ++ +L+ LW +KPGG+
Sbjct: 308 WYDGRQFDAVLADVPCTASGVVRRNPDIKWLRLPTDAAKTARQQEGLLDALWTTVKPGGR 367
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
+LF TCSL+ EE+ Q F H D+ + P LLPT ++ DGFFY+L +KR
Sbjct: 368 MLFATCSLFTEENSLQLQRFLARHADA-SCSDPQTLLPTPSQ----DGFFYALIRKR 419
>gi|326319222|ref|YP_004236894.1| sun protein [Acidovorax avenae subsp. avenae ATCC 19860]
gi|323376058|gb|ADX48327.1| sun protein [Acidovorax avenae subsp. avenae ATCC 19860]
Length = 461
Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 51/120 (42%), Positives = 76/120 (63%), Gaps = 9/120 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FD IL D PCT SG+VRR+PD+ WLRR DI +L+ ++L+ LW +L+PGG++L+ TC
Sbjct: 340 FDAILLDAPCTASGIVRRHPDVRWLRRPGDIAQLATQQARLLSTLWPLLRPGGRMLYCTC 399
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPGQLLP---------TVNKKQDYDGFFYSLFQKR 137
S++ E ++ F N+ D+ L SPG LLP N +++DGFFY+L ++
Sbjct: 400 SVFRAEGDDTVQSFLANNNDAHLLPSPGHLLPRDPGDGGSVRENPSREHDGFFYALLGRQ 459
>gi|120613161|ref|YP_972839.1| sun protein [Acidovorax citrulli AAC00-1]
gi|120591625|gb|ABM35065.1| sun protein [Acidovorax citrulli AAC00-1]
Length = 461
Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 51/120 (42%), Positives = 76/120 (63%), Gaps = 9/120 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FD IL D PCT SG+VRR+PD+ WLRR DI +L+ ++L+ LW +L+PGG++L+ TC
Sbjct: 340 FDAILLDAPCTASGIVRRHPDVRWLRRPGDIAQLAAQQARLLSTLWPLLRPGGRMLYCTC 399
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPGQLLP---------TVNKKQDYDGFFYSLFQKR 137
S++ E ++ F N+ D+ L SPG LLP N +++DGFFY+L ++
Sbjct: 400 SVFRAEGDDMVRSFLANNNDAHLLPSPGHLLPRDPGDGGSVRENPSREHDGFFYALLGRQ 459
>gi|393763531|ref|ZP_10352151.1| ribosomal RNA small subunit methyltransferase B [Alishewanella agri
BL06]
gi|392605599|gb|EIW88490.1| ribosomal RNA small subunit methyltransferase B [Alishewanella agri
BL06]
Length = 430
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 55/122 (45%), Positives = 78/122 (63%), Gaps = 9/122 (7%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+++++ FDRIL D+PC+ +GV+RR+PDI WLR+K DI L+ +IL W++LKPGG
Sbjct: 310 WWQSELFDRILLDVPCSATGVIRRHPDIRWLRKKTDIAPLTVLQQQILQCAWQLLKPGGT 369
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPG------QLLPTVNKKQDYDGFFYSLF 134
LL+ TCS+ E+ EQ F H D+ L+ P Q+LP +QD DGFFY+L
Sbjct: 370 LLYATCSVLPAENREQLQQFMAQHSDASLLSLPELGVNSWQILP---GEQDMDGFFYALL 426
Query: 135 QK 136
K
Sbjct: 427 HK 428
>gi|222112408|ref|YP_002554672.1| sun protein [Acidovorax ebreus TPSY]
gi|221731852|gb|ACM34672.1| sun protein [Acidovorax ebreus TPSY]
Length = 457
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 52/119 (43%), Positives = 75/119 (63%), Gaps = 9/119 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FD IL D PCT SG+VRR+PD+ WLRR++D+ +L+ ++L LW +L+PGG+LL+ TC
Sbjct: 336 FDAILLDAPCTASGIVRRHPDVRWLRRESDVAQLAAQQSRLLAALWPLLRPGGRLLYCTC 395
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQD---------YDGFFYSLFQK 136
S++ E + Q F ++ D+ L SPG L P K+D +DGFFY+L K
Sbjct: 396 SVFRAEGDVQIAAFLAHNTDARLLPSPGHLFPGSPDKRDGLRDNGPGEHDGFFYALLHK 454
>gi|71905670|ref|YP_283257.1| Fmu, rRNA SAM-dependent methyltransferase [Dechloromonas aromatica
RCB]
gi|71845291|gb|AAZ44787.1| Fmu, rRNA SAM-dependent methyltransferase [Dechloromonas aromatica
RCB]
Length = 419
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 54/116 (46%), Positives = 78/116 (67%), Gaps = 5/116 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FD +LAD+PCT SGVVRRNPD WLRR+ DI +K +IL+ LW++++PGGK
Sbjct: 307 WWDGRPFDAVLADVPCTASGVVRRNPDTKWLRREADIFSFAKTQARILDALWQVVRPGGK 366
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
LL+VTCS++ E+ Q F + ++ R + QLLPT D+DGF+Y L +K
Sbjct: 367 LLYVTCSVFPTENGVQIARFLERQPEARRCHEE-QLLPTA----DHDGFYYCLLEK 417
>gi|121596181|ref|YP_988077.1| sun protein [Acidovorax sp. JS42]
gi|120608261|gb|ABM44001.1| sun protein [Acidovorax sp. JS42]
Length = 457
Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 52/119 (43%), Positives = 75/119 (63%), Gaps = 9/119 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FD IL D PCT SG+VRR+PD+ WLRR++D+ +L+ ++L LW +L+PGG+LL+ TC
Sbjct: 336 FDAILLDAPCTASGIVRRHPDVRWLRRESDVAQLAAQQSRLLAALWPLLRPGGRLLYCTC 395
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQD---------YDGFFYSLFQK 136
S++ E + Q F ++ D+ L SPG L P K+D +DGFFY+L K
Sbjct: 396 SVFRAEGDGQIAAFLAHNTDARLLPSPGHLFPGRPDKRDGLRDNGPGEHDGFFYALLHK 454
>gi|397661083|ref|YP_006501783.1| ribosomal RNA small subunit methyltransferase [Taylorella
equigenitalis ATCC 35865]
gi|394349262|gb|AFN35176.1| ribosomal RNA small subunit methyltransferase [Taylorella
equigenitalis ATCC 35865]
Length = 425
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/116 (52%), Positives = 79/116 (68%), Gaps = 5/116 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FD ILAD+PCTGSGVVRR+PDI WLR++ D+ K + KI+ NLW MLK GG
Sbjct: 314 WWDGRKFDAILADVPCTGSGVVRRHPDIKWLRKEVDVIKTVELQRKIIINLWDMLKFGGY 373
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
LL+VTCS++ EE E QA F+ + RL S G + P KQ DGFFY+LF+K
Sbjct: 374 LLYVTCSVFKEEGELQAQYFTTKLEGIERLPSLGHIFP---PKQ--DGFFYALFKK 424
>gi|325983531|ref|YP_004295933.1| sun protein [Nitrosomonas sp. AL212]
gi|325533050|gb|ADZ27771.1| sun protein [Nitrosomonas sp. AL212]
Length = 425
Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 57/122 (46%), Positives = 80/122 (65%), Gaps = 10/122 (8%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + +DRILAD+PC+ SGVV R+PDI WLRR++D+ K + IL+ LWK+L+ GK
Sbjct: 307 WWDKQPYDRILADVPCSASGVVCRHPDIKWLRRESDLTKFAITQQAILDALWKILRKNGK 366
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSP------GQLLPTVNKKQDYDGFFYSLF 134
LL+VTCS++ EE+ Q F K+H D+ +L GQLLP +DGFFY+L
Sbjct: 367 LLYVTCSVFAEENTMQIEKFLKHHSDACQLPLSVAAMIDGQLLPDTQ----HDGFFYTLL 422
Query: 135 QK 136
QK
Sbjct: 423 QK 424
>gi|319778867|ref|YP_004129780.1| ribosomal RNA small subunit methyltransferase B [Taylorella
equigenitalis MCE9]
gi|317108891|gb|ADU91637.1| Ribosomal RNA small subunit methyltransferase B [Taylorella
equigenitalis MCE9]
Length = 425
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/116 (52%), Positives = 79/116 (68%), Gaps = 5/116 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FD ILAD+PCTGSGVVRR+PDI WLR++ D+ K + KI+ NLW MLK GG
Sbjct: 314 WWDGRKFDAILADVPCTGSGVVRRHPDIKWLRKEVDVIKTVELQRKIIINLWDMLKFGGY 373
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
LL+VTCS++ EE E QA F+ + RL S G + P KQ DGFFY+LF+K
Sbjct: 374 LLYVTCSVFKEEGELQAQYFTTKLEGIERLPSLGHIFP---PKQ--DGFFYALFKK 424
>gi|399115577|emb|CCG18380.1| ribosomal RNA small subunit methyltransferase [Taylorella
equigenitalis 14/56]
Length = 425
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/116 (52%), Positives = 79/116 (68%), Gaps = 5/116 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FD ILAD+PCTGSGVVRR+PDI WLR++ D+ K + KI+ NLW MLK GG
Sbjct: 314 WWDGRKFDAILADVPCTGSGVVRRHPDIKWLRKEVDVIKTVELQRKIIINLWDMLKFGGY 373
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
LL+VTCS++ EE E QA F+ + RL S G + P KQ DGFFY+LF+K
Sbjct: 374 LLYVTCSVFKEEGELQAQYFTTKLEGIERLPSLGHIFP---PKQ--DGFFYALFKK 424
>gi|383760313|ref|YP_005439299.1| Sun domain protein [Rubrivivax gelatinosus IL144]
gi|381380983|dbj|BAL97800.1| Sun domain protein [Rubrivivax gelatinosus IL144]
Length = 438
Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 55/147 (37%), Positives = 85/147 (57%), Gaps = 16/147 (10%)
Query: 2 IAGEIESSDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLS 61
+ ++ +SD N ++ + FD IL D PC+ SG+VRR+PD+ WLRR +DI L+
Sbjct: 295 LQAQVRASDARDTAN----WWDGRPFDAILLDAPCSASGIVRRHPDVRWLRRPDDITALA 350
Query: 62 KYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD---SIRLNSPGQLLP 118
+ ++L+ LW +L PGG+L++ TCSL+ E EQ F + H D S+ SPG LLP
Sbjct: 351 RLQAEMLDALWPLLAPGGRLVYATCSLFRSEGAEQIDAFLQRHGDAGASLDPQSPGHLLP 410
Query: 119 TVN---------KKQDYDGFFYSLFQK 136
+ ++ +DGF+Y+L K
Sbjct: 411 LADNSPHPSATPRRALHDGFYYALIHK 437
>gi|392310460|ref|ZP_10272994.1| 16S rRNA methyltransferase [Pseudoalteromonas citrea NCIMB 1889]
Length = 428
Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 55/127 (43%), Positives = 79/127 (62%), Gaps = 14/127 (11%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ N +DRIL D+PC+ +GV+RR+PDI WLRRK DI L+ ILNN+W +LKPGG
Sbjct: 307 WWDNTPYDRILLDVPCSATGVIRRHPDIKWLRRKTDIDDLATLQASILNNIWPLLKPGGT 366
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRL--------NSPG-QLLPTVNKKQDYDGFFY 131
L++ TCS+ EE+ +Q F N+ D+I PG QLLP ++ DGF+Y
Sbjct: 367 LIYATCSVLPEENTQQVAKFLANNSDAIHHPLHDNDTPEHPGLQLLPGLS-----DGFYY 421
Query: 132 SLFQKRK 138
+ K++
Sbjct: 422 AKLTKQQ 428
>gi|421564430|ref|ZP_16010229.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM3081]
gi|402346027|gb|EJU81131.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM3081]
Length = 419
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 57/116 (49%), Positives = 76/116 (65%), Gaps = 5/116 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y K FD ILAD+PCT SGV RRNPD+ WLRR D K ++ +L+ LW++LK GG+
Sbjct: 308 WYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDAAKTARQQEALLDALWQVLKSGGR 367
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
+LF TCS++ EE++ Q F H D+ + S LLP NK Q DGF+Y+L QK
Sbjct: 368 MLFATCSVFVEENDGQLQKFLSRHNDAEPIESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|339481947|ref|YP_004693733.1| sun protein [Nitrosomonas sp. Is79A3]
gi|338804092|gb|AEJ00334.1| sun protein [Nitrosomonas sp. Is79A3]
Length = 425
Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats.
Identities = 58/122 (47%), Positives = 78/122 (63%), Gaps = 10/122 (8%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + +DRILAD+PC+ SGVV R+PDI WLRR++D+ K + ILN LWK+L GK
Sbjct: 307 WWDGQSYDRILADVPCSASGVVCRHPDIKWLRRESDLVKFAASQQAILNALWKILSRDGK 366
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLN------SPGQLLPTVNKKQDYDGFFYSLF 134
LL+VTCS++ EE+ Q F K+H D+ L GQLLP +DGFFY+L
Sbjct: 367 LLYVTCSIFAEENTMQIEKFLKHHPDACPLPLSGAAMVDGQLLPDTQ----HDGFFYTLL 422
Query: 135 QK 136
QK
Sbjct: 423 QK 424
>gi|299531357|ref|ZP_07044767.1| sun, tRNA and rRNA cytosine-C5-methylase [Comamonas testosteroni
S44]
gi|298720764|gb|EFI61711.1| sun, tRNA and rRNA cytosine-C5-methylase [Comamonas testosteroni
S44]
Length = 461
Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats.
Identities = 48/121 (39%), Positives = 76/121 (62%), Gaps = 9/121 (7%)
Query: 25 KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 84
++FD IL D PCT SG+VRR PD+ WLRR++D+ +L+ ++L+ LW +L+PGG++++
Sbjct: 339 QFFDAILLDAPCTASGIVRRQPDVRWLRRESDVAQLADIQSRLLDTLWPLLQPGGRMVYC 398
Query: 85 TCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQ---------DYDGFFYSLFQ 135
TCS++ E + Q F + + L +PG L+P K D+DGFFY+L +
Sbjct: 399 TCSVFKAEGDAQMQAFLARNTTAASLPAPGHLIPGKAAKHDSVADNPLGDHDGFFYALLE 458
Query: 136 K 136
K
Sbjct: 459 K 459
>gi|388566081|ref|ZP_10152557.1| sun protein [Hydrogenophaga sp. PBC]
gi|388266711|gb|EIK92225.1| sun protein [Hydrogenophaga sp. PBC]
Length = 443
Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats.
Identities = 52/144 (36%), Positives = 83/144 (57%), Gaps = 13/144 (9%)
Query: 2 IAGEIESSDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLS 61
+A E+ +D + + ++ + FD IL D PCT SG+VRR+PD+ WLRR +D+ L+
Sbjct: 300 LAAEVRCADAARPAD----WWDGRPFDAILLDAPCTASGIVRRHPDVRWLRRDSDVDALA 355
Query: 62 KYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTV- 120
+ +L+ LW +++PGG+L++ TCS++ E +QA F + H D+ +PG L P
Sbjct: 356 RTQRALLDALWPLVRPGGRLVYATCSVFRAEGSDQAAAFLQRHTDARTAPAPGHLFPGTP 415
Query: 121 --------NKKQDYDGFFYSLFQK 136
N+ DGFFY+ F K
Sbjct: 416 GGAGQFNDNRPGGPDGFFYARFDK 439
>gi|325267933|ref|ZP_08134582.1| ribosomal RNA small subunit methyltransferase B [Kingella
denitrificans ATCC 33394]
gi|324980619|gb|EGC16282.1| ribosomal RNA small subunit methyltransferase B [Kingella
denitrificans ATCC 33394]
Length = 421
Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats.
Identities = 55/118 (46%), Positives = 76/118 (64%), Gaps = 5/118 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FD ILAD+PCT SG ++RNPDI WLRR ND K ++ +L+ LW+ LKPGG+
Sbjct: 307 WWDGQPFDAILADVPCTASGTIKRNPDIKWLRRPNDAAKTARQQEILLDRLWQTLKPGGR 366
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKRK 138
+L TCSL+ EE+ Q F + H D+ +L LLP N KQ DGF+Y+L K +
Sbjct: 367 MLLATCSLFHEENGRQCQNFLQRHPDA-QLQQEQTLLP--NDKQ--DGFYYALISKSQ 419
>gi|121609225|ref|YP_997032.1| sun protein [Verminephrobacter eiseniae EF01-2]
gi|121553865|gb|ABM58014.1| sun protein [Verminephrobacter eiseniae EF01-2]
Length = 470
Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats.
Identities = 52/119 (43%), Positives = 71/119 (59%), Gaps = 9/119 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FD IL D PC+ SG+VRR+PD+ WLRR DI L+ ++L LW +L+PGG+LL+ +C
Sbjct: 349 FDAILLDAPCSASGIVRRHPDVRWLRRATDIAPLAALQARLLRALWPLLRPGGRLLYCSC 408
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQ---------DYDGFFYSLFQK 136
S++ E + F +H D+ L SPG LLP K D+DGFFY+L K
Sbjct: 409 SVFRAEGDAPVQAFLAHHTDARLLPSPGHLLPGNADKDGAVPDNAGGDHDGFFYALLHK 467
>gi|421537901|ref|ZP_15984083.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 93003]
gi|402317938|gb|EJU53465.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 93003]
Length = 419
Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats.
Identities = 57/116 (49%), Positives = 75/116 (64%), Gaps = 5/116 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y K FD ILAD+PCT SGV RRNPD+ WLRR D K ++ +L+ LW+ LK GG+
Sbjct: 308 WYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDALWQTLKQGGR 367
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
+L TCS++ EE++EQ F H D+ + S LLP NK Q DGF+Y+L QK
Sbjct: 368 MLLATCSVFVEENDEQLQKFLNRHADAEPIESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|332524650|ref|ZP_08400849.1| Sun protein [Rubrivivax benzoatilyticus JA2]
gi|332107958|gb|EGJ09182.1| Sun protein [Rubrivivax benzoatilyticus JA2]
Length = 436
Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats.
Identities = 53/127 (41%), Positives = 79/127 (62%), Gaps = 10/127 (7%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
R++ + FD IL D PC+ +G+VRR+PD+ WLRR +DI L++ +IL+ LW +L PGG
Sbjct: 309 RWWDGRPFDAILLDAPCSAAGIVRRHPDVRWLRRPDDITALARLQGEILDALWPLLAPGG 368
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKD---SIRLNSPGQLLPTVN-------KKQDYDGF 129
+L++ TCSL+ E EQ F + H D S+ SPG LLP + ++ +DGF
Sbjct: 369 RLVYATCSLFRSEGAEQIDAFLQRHADSGASLDPLSPGHLLPLADNPSQPSARQALHDGF 428
Query: 130 FYSLFQK 136
+Y+L K
Sbjct: 429 YYALVHK 435
>gi|82701526|ref|YP_411092.1| sun protein [Nitrosospira multiformis ATCC 25196]
gi|82409591|gb|ABB73700.1| sun protein [Nitrosospira multiformis ATCC 25196]
Length = 442
Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats.
Identities = 56/122 (45%), Positives = 82/122 (67%), Gaps = 10/122 (8%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRILAD PC+ SGVVRR+PDI WLRR++D+ + ++ K L+ LW+ L GGK
Sbjct: 324 WWDGRPFDRILADAPCSASGVVRRHPDIKWLRRESDLAQFAEIQRKTLDALWQTLVKGGK 383
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDS--IRLNSP----GQLLPTVNKKQDYDGFFYSLF 134
LL+VTCS++ EE+ Q F +H D+ + + P GQLLP ++ +DGFFY+L
Sbjct: 384 LLYVTCSIFAEENGLQVESFLNHHPDARLLPFSVPEIVEGQLLPDLH----HDGFFYALL 439
Query: 135 QK 136
+K
Sbjct: 440 EK 441
>gi|300718674|ref|YP_003743477.1| 16S rRNA methyltransferase B [Erwinia billingiae Eb661]
gi|299064510|emb|CAX61630.1| 16S rRNA methyltransferase B [Erwinia billingiae Eb661]
Length = 429
Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats.
Identities = 56/120 (46%), Positives = 75/120 (62%), Gaps = 9/120 (7%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
+K FDRIL D PC+ +GV+RR+PDI WLRR DI +L+ +IL+ +W LKPGG LL+
Sbjct: 313 DKQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAALQQQILDAIWPHLKPGGTLLY 372
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSI-----RLNSPG-QLLPTVNKKQDYDGFFYSLFQKR 137
TCS+ EE+ Q F + H+D++ N PG Q+ P QD DGFFY+ KR
Sbjct: 373 ATCSILPEENHLQVAAFLERHEDAMLSDTGDANHPGLQVFPA---PQDGDGFFYAKLLKR 429
>gi|394990077|ref|ZP_10382909.1| hypothetical protein SCD_02503 [Sulfuricella denitrificans skB26]
gi|393790342|dbj|GAB72548.1| hypothetical protein SCD_02503 [Sulfuricella denitrificans skB26]
Length = 423
Score = 112 bits (279), Expect = 6e-23, Method: Composition-based stats.
Identities = 56/122 (45%), Positives = 80/122 (65%), Gaps = 10/122 (8%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ K F RILAD+PC+ SGVVRR+PDI WLRR+ DI + +IL+ LW++L GGK
Sbjct: 305 WWDGKPFQRILADVPCSASGVVRRHPDIKWLRREVDITAFAAQQAEILDALWRVLGSGGK 364
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDS--IRLNSP----GQLLPTVNKKQDYDGFFYSLF 134
LL+ TCS++ EE+++Q F H+D+ + L+ P GQL P + +DGFFY+L
Sbjct: 365 LLYATCSVFAEENQQQIAQFLVRHEDAQCLPLSLPAMKDGQLTPNLQ----HDGFFYALL 420
Query: 135 QK 136
K
Sbjct: 421 LK 422
>gi|389604732|emb|CCA43658.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis alpha522]
Length = 419
Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats.
Identities = 56/116 (48%), Positives = 75/116 (64%), Gaps = 5/116 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y K FD +LAD+PCT SGV RRNPD+ WLRR D K ++ +L+ LW+ LK GG+
Sbjct: 308 WYDGKPFDAVLADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDALWQTLKQGGR 367
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
+L TCS++ EE++EQ F H D+ + S LLP NK Q DGF+Y+L QK
Sbjct: 368 MLLATCSVFVEENDEQLQKFLNRHADAEPIESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|91774540|ref|YP_544296.1| sun protein [Methylobacillus flagellatus KT]
gi|91708527|gb|ABE48455.1| sun protein [Methylobacillus flagellatus KT]
Length = 425
Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats.
Identities = 53/118 (44%), Positives = 78/118 (66%), Gaps = 12/118 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
+DRILAD+PC+ SG+VRR+ DI WLRR+ DI ++ IL LW++L GGKLL+VTC
Sbjct: 311 YDRILADVPCSASGIVRRHVDIKWLRREQDIAAFAEQQRLILQGLWRLLAKGGKLLYVTC 370
Query: 87 SLWFEESEEQAIIFSKNHKDSIRL--------NSPGQLLPTVNKKQDYDGFFYSLFQK 136
S++ EE+++Q F + D+ ++ ++ GQLLP ++DGFFY+L QK
Sbjct: 371 SVFHEENQQQIARFLQTQPDARQMPCKHGTLQSNQGQLLPGT----EHDGFFYALLQK 424
>gi|124265465|ref|YP_001019469.1| Sun protein [Methylibium petroleiphilum PM1]
gi|124258240|gb|ABM93234.1| Sun protein [Methylibium petroleiphilum PM1]
Length = 449
Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats.
Identities = 50/126 (39%), Positives = 77/126 (61%), Gaps = 9/126 (7%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + +D IL D PC+ SG+VRR+PD+ WLRR +D+ L+ ++L+ LW +L+PGG+
Sbjct: 322 WWDGRPYDAILLDAPCSASGIVRRHPDVRWLRRASDLDALASTQAELLDALWPLLRPGGR 381
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNK---------KQDYDGFFY 131
LL+ TCS++ E Q F + D+I SPG LLP V+ + DGF+Y
Sbjct: 382 LLYATCSVFKAEGAHQIDAFLQRAPDAIAQPSPGYLLPVVDNPGQVSEGPLRPSTDGFYY 441
Query: 132 SLFQKR 137
+L +KR
Sbjct: 442 ALLEKR 447
>gi|221135270|ref|ZP_03561573.1| 16S rRNA m(5)C 967 methyltransferase [Glaciecola sp. HTCC2999]
Length = 442
Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats.
Identities = 54/127 (42%), Positives = 78/127 (61%), Gaps = 11/127 (8%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y + FDRIL D PC+ +GV+RR+PDI WLR+ +DI L ++L +W++L+PGGK
Sbjct: 312 WYGGEPFDRILLDAPCSATGVIRRHPDIRWLRQASDIAPLVAIQAELLMQMWQILQPGGK 371
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQL--LPTVNKK---------QDYDGF 129
LL+ TCS+ EE+ +Q F H +++ L P L L TVN + D DGF
Sbjct: 372 LLYATCSILPEENSQQIQTFIAQHPEAVVLPIPTSLSELTTVNDEFGLQVLPGDADMDGF 431
Query: 130 FYSLFQK 136
+Y+L QK
Sbjct: 432 YYTLLQK 438
>gi|332530506|ref|ZP_08406447.1| 16S rRNA methyltransferase B [Hylemonella gracilis ATCC 19624]
gi|332040075|gb|EGI76460.1| 16S rRNA methyltransferase B [Hylemonella gracilis ATCC 19624]
Length = 469
Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats.
Identities = 51/119 (42%), Positives = 75/119 (63%), Gaps = 9/119 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FD IL D PCT SG+VRR+PD+ WLRR++DI L++ ++L LW L PGG++L+ TC
Sbjct: 348 FDAILLDAPCTASGIVRRHPDVRWLRRESDIANLARQQARLLAALWPRLLPGGRMLYCTC 407
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPGQLLP---------TVNKKQDYDGFFYSLFQK 136
S++ E EEQ + F ++K++ +PG L P T N + +DGF+Y+L K
Sbjct: 408 SVFKAEGEEQVLAFLAHNKEASLRPAPGHLWPHSAIQSEALTDNAIRGHDGFYYALLSK 466
>gi|264676496|ref|YP_003276402.1| sun, tRNA and rRNA cytosine-C5-methylase [Comamonas testosteroni
CNB-2]
gi|262207008|gb|ACY31106.1| sun, tRNA and rRNA cytosine-C5-methylase [Comamonas testosteroni
CNB-2]
Length = 461
Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats.
Identities = 48/121 (39%), Positives = 75/121 (61%), Gaps = 9/121 (7%)
Query: 25 KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 84
+ FD IL D PCT SG+VRR PD+ WLRR++D+ +L+ ++L+ LW +L+PGG++++
Sbjct: 339 QLFDAILLDAPCTASGIVRRQPDVRWLRRESDVTQLADIQSRLLDTLWPLLQPGGRMVYC 398
Query: 85 TCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQ---------DYDGFFYSLFQ 135
TCS++ E + Q F + + L +PG L+P K D+DGFFY+L +
Sbjct: 399 TCSVFKAEGDAQMQAFLARNTTAASLPAPGHLIPGKAAKHDSVADNPLGDHDGFFYALLE 458
Query: 136 K 136
K
Sbjct: 459 K 459
>gi|345876229|ref|ZP_08828003.1| ribosomal RNA small subunit methyltransferase B [Neisseria weaveri
LMG 5135]
gi|343966834|gb|EGV35086.1| ribosomal RNA small subunit methyltransferase B [Neisseria weaveri
LMG 5135]
Length = 419
Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats.
Identities = 58/116 (50%), Positives = 74/116 (63%), Gaps = 5/116 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y + FD ILAD+PCT SGVVRRNPDI WLRR D K ++ +L+ LW+ L GK
Sbjct: 308 WYDKQNFDVILADVPCTASGVVRRNPDIKWLRRPGDAAKTARQQEALLDTLWQTLTENGK 367
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
+L TCS++ EE+E+Q F H D+ L S LLP NK Q DGF+Y+L QK
Sbjct: 368 MLLATCSIFVEENEQQLQKFLNRHDDA-ELISSHVLLP--NKHQ--DGFYYALIQK 418
>gi|221069396|ref|ZP_03545501.1| sun protein [Comamonas testosteroni KF-1]
gi|220714419|gb|EED69787.1| sun protein [Comamonas testosteroni KF-1]
Length = 461
Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats.
Identities = 48/119 (40%), Positives = 74/119 (62%), Gaps = 9/119 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FD IL D PCT SG+VRR PD+ WLRR++D+ +L+ ++L+ LW +L+PGG++++ TC
Sbjct: 341 FDAILLDAPCTASGIVRRQPDVRWLRRESDVAQLADIQSRLLDTLWPLLQPGGRMVYCTC 400
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQ---------DYDGFFYSLFQK 136
S++ E + Q F + + L +PG L+P K D+DGFFY+L +K
Sbjct: 401 SVFKAEGDAQMQAFLARNTTAASLPAPGHLIPGKAAKHDSVSDNPLGDHDGFFYALLEK 459
>gi|451823350|ref|YP_007459624.1| ribosomal RNA small subunit methyltransferase B [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
gi|451776150|gb|AGF47191.1| ribosomal RNA small subunit methyltransferase B [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
Length = 439
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/123 (45%), Positives = 85/123 (69%), Gaps = 7/123 (5%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
+++ F+ ++AD+PCT SG+VR++PDI WLR+ +DI+K +IL +LWK + GG
Sbjct: 319 QWWDGVMFNVVIADVPCTASGIVRKHPDIRWLRKYSDIQKSVLLQKRILESLWKTVVSGG 378
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQ-----DYDGFFYSLF 134
LL+VTCS++ EE QA+ F + H+D+I L+S Q+LP NK Q D DGFF++LF
Sbjct: 379 LLLYVTCSIFPEECIFQALSFLERHQDAIFLDSHNQILP--NKSQNELFVDNDGFFFALF 436
Query: 135 QKR 137
+K+
Sbjct: 437 KKK 439
>gi|372487495|ref|YP_005027060.1| ribosomal RNA small subunit methyltransferase RsmB [Dechlorosoma
suillum PS]
gi|359354048|gb|AEV25219.1| ribosomal RNA small subunit methyltransferase RsmB [Dechlorosoma
suillum PS]
Length = 445
Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 53/120 (44%), Positives = 77/120 (64%), Gaps = 8/120 (6%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRILAD+PC+ SGVVRR+PD WLRR+ DI + ++ +IL LW L GG+
Sbjct: 328 WWDGRPFDRILADVPCSASGVVRRHPDSKWLRRETDIAQFARVQRQILEVLWPTLAVGGR 387
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPG----QLLPTVNKKQDYDGFFYSLFQK 136
LL+ TCS++ EE+ +Q F H D+ R+ G QLLP ++DGF+Y+L +K
Sbjct: 388 LLYATCSVFPEENSQQVSAFLARHGDARRIGIDGADELQLLP----GSEHDGFYYALLEK 443
>gi|296315160|ref|ZP_06865101.1| ribosomal RNA small subunit methyltransferase B [Neisseria
polysaccharea ATCC 43768]
gi|296837969|gb|EFH21907.1| ribosomal RNA small subunit methyltransferase B [Neisseria
polysaccharea ATCC 43768]
Length = 419
Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 56/116 (48%), Positives = 75/116 (64%), Gaps = 5/116 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y K FD ILAD+PCT SGV RRNPD+ WLRR D K ++ +L+ LW++LK GG+
Sbjct: 308 WYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDAAKTARQQEALLDALWQVLKSGGR 367
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
+L TCS++ EE++ Q F H D+ + S LLP NK Q DGF+Y+L QK
Sbjct: 368 MLIATCSVFVEENDGQLQKFLSRHNDAEPIESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|417957673|ref|ZP_12600593.1| ribosomal RNA small subunit methyltransferase B [Neisseria weaveri
ATCC 51223]
gi|343968006|gb|EGV36244.1| ribosomal RNA small subunit methyltransferase B [Neisseria weaveri
ATCC 51223]
Length = 417
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 74/117 (63%), Gaps = 5/117 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y + FD ILAD+PCT SGVVRRNPDI WLRR D K ++ +L+ LW+ L GK
Sbjct: 306 WYDKQNFDVILADVPCTASGVVRRNPDIKWLRRPGDAAKTARQQEALLDTLWQTLTENGK 365
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
+L TCS++ EE+E+Q F H D+ L S LLP NK Q DGF+Y+L QK
Sbjct: 366 MLLATCSIFVEENEQQLQKFLNRHDDA-ELISSHVLLP--NKHQ--DGFYYALIQKH 417
>gi|114330411|ref|YP_746633.1| sun protein [Nitrosomonas eutropha C91]
gi|114307425|gb|ABI58668.1| sun protein [Nitrosomonas eutropha C91]
Length = 426
Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 56/126 (44%), Positives = 78/126 (61%), Gaps = 10/126 (7%)
Query: 17 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLK 76
N +++ + +DRILAD+PC+ SGVV R+PDI WLRR D ++ ILN LW +L+
Sbjct: 304 NPSQWWNGQLYDRILADVPCSASGVVNRHPDIKWLRRPGDTDNFAQIQTTILNELWPLLR 363
Query: 77 PGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLN------SPGQLLPTVNKKQDYDGFF 130
GGKLL+ TCS++ EE+ F H+D+ RL + GQLLP + +DGFF
Sbjct: 364 HGGKLLYATCSVFNEENNLITEKFLSIHQDASRLPCSHEEINNGQLLPGPH----HDGFF 419
Query: 131 YSLFQK 136
Y+L QK
Sbjct: 420 YALLQK 425
>gi|452126552|ref|ZP_21939135.1| methyltransferase [Bordetella holmesii F627]
gi|451921647|gb|EMD71792.1| methyltransferase [Bordetella holmesii F627]
Length = 443
Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 56/120 (46%), Positives = 80/120 (66%), Gaps = 3/120 (2%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FD +LAD+PCT SG+VRR+PDI WLRR D+ + + +I + LW+++ PGG
Sbjct: 323 WWDGRPFDAVLADVPCTASGIVRRHPDIRWLRRAPDVARTAALQARIADALWEVVAPGGH 382
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLP---TVNKKQDYDGFFYSLFQKR 137
LL+VTCS++ E + QA F+ H D+ L SPGQLLP + +DGFFY+LF KR
Sbjct: 383 LLYVTCSIFPAEGQAQARAFAARHADAQALPSPGQLLPVAVNATPESQHDGFFYALFAKR 442
>gi|452129928|ref|ZP_21942501.1| methyltransferase [Bordetella holmesii H558]
gi|451922788|gb|EMD72932.1| methyltransferase [Bordetella holmesii H558]
Length = 447
Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 56/120 (46%), Positives = 80/120 (66%), Gaps = 3/120 (2%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FD +LAD+PCT SG+VRR+PDI WLRR D+ + + +I + LW+++ PGG
Sbjct: 327 WWDGRPFDAVLADVPCTASGIVRRHPDIRWLRRAPDVARTAALQARIADALWEVVAPGGH 386
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLP---TVNKKQDYDGFFYSLFQKR 137
LL+VTCS++ E + QA F+ H D+ L SPGQLLP + +DGFFY+LF KR
Sbjct: 387 LLYVTCSIFPAEGQAQARAFAARHADAQALPSPGQLLPVAVNATPESQHDGFFYALFAKR 446
>gi|254494751|ref|ZP_05107922.1| 16S RNA methyltransferase [Neisseria gonorrhoeae 1291]
gi|226513791|gb|EEH63136.1| 16S RNA methyltransferase [Neisseria gonorrhoeae 1291]
Length = 419
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 56/116 (48%), Positives = 75/116 (64%), Gaps = 5/116 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y K FD ILAD+PCT SGV RRNPD+ WLRR D K ++ +L+ LW++LK GG+
Sbjct: 308 WYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDAAKTARRQEALLDALWQVLKQGGR 367
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
+L TCS++ EE++ Q F H D+ + S LLP NK Q DGF+Y+L QK
Sbjct: 368 MLLATCSVFVEENDGQLQKFLNRHADAEPIESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|416181156|ref|ZP_11611511.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis M13399]
gi|325135221|gb|EGC57846.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis M13399]
Length = 419
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 55/117 (47%), Positives = 76/117 (64%), Gaps = 5/117 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y K FD +LAD+PCT SGV RRNPD+ WLRR D K ++ +L+ LW++LK GG+
Sbjct: 308 WYDGKPFDAVLADVPCTASGVARRNPDVKWLRRPTDAAKTARQQEALLDALWQVLKSGGR 367
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
+L TCS++ EE++ Q F H D+ + S LLP NK Q DGF+Y+L QK+
Sbjct: 368 MLIATCSVFVEENDGQLQKFLNRHADAELIESR-VLLP--NKHQ--DGFYYALIQKQ 419
>gi|85711007|ref|ZP_01042068.1| tRNA and rRNA methylase [Idiomarina baltica OS145]
gi|85695411|gb|EAQ33348.1| tRNA and rRNA methylase [Idiomarina baltica OS145]
Length = 437
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 56/121 (46%), Positives = 75/121 (61%), Gaps = 8/121 (6%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRIL D PC+ +GV+RR+PDI WLRR +DI +L + +L LW LKPGG+
Sbjct: 318 WWDKQPFDRILLDAPCSATGVIRRHPDIKWLRRSSDIDQLVELQQSMLERLWPTLKPGGQ 377
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKD----SIRLNSPG-QLLPTVNKKQDYDGFFYSLFQ 135
L++ TCS+ EE+ EQ F H D +I N P QLLP N D DGFFY+ +
Sbjct: 378 LIYATCSILPEENSEQISHFLGQHSDANLIAIEANRPMLQLLPGEN---DGDGFFYAKIE 434
Query: 136 K 136
K
Sbjct: 435 K 435
>gi|313199965|ref|YP_004038623.1| sun protein [Methylovorus sp. MP688]
gi|312439281|gb|ADQ83387.1| sun protein [Methylovorus sp. MP688]
Length = 427
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 56/125 (44%), Positives = 78/125 (62%), Gaps = 13/125 (10%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ ++ FDRILAD+PCT SG+VRR+ DI WLRR+ D+ + IL LW+ L GGK
Sbjct: 306 WWDSRPFDRILADVPCTASGIVRRHVDIKWLRREADVASFVRQQALILPQLWQCLAKGGK 365
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRL-----NSP----GQLLPTVNKKQDYDGFFY 131
LL+ TCS++ EE+++Q F + H D+ +L SP GQL P +DGFFY
Sbjct: 366 LLYATCSVFHEENQQQIDRFLQQHADAKQLPLSQDASPHARHGQLYPCAA----HDGFFY 421
Query: 132 SLFQK 136
+L QK
Sbjct: 422 ALLQK 426
>gi|294669086|ref|ZP_06734172.1| ribosomal RNA small subunit methyltransferase B [Neisseria elongata
subsp. glycolytica ATCC 29315]
gi|291309078|gb|EFE50321.1| ribosomal RNA small subunit methyltransferase B [Neisseria elongata
subsp. glycolytica ATCC 29315]
Length = 420
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 54/117 (46%), Positives = 74/117 (63%), Gaps = 5/117 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y FD +LAD+PCT SGV +RNPDI WLRR D K ++ +L+NLW +LKPGG+
Sbjct: 308 WYDGNPFDAVLADVPCTASGVTKRNPDIKWLRRPADGGKTARQQETMLDNLWSVLKPGGR 367
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
+L TCSL+ EE++ Q F + H D+ S LLP K DGF+Y+L +K+
Sbjct: 368 MLLATCSLFHEENDGQLQRFLRRHPDAACTESL-TLLP----KHTQDGFYYALIRKQ 419
>gi|293393280|ref|ZP_06637594.1| RNA methyltransferase Sun [Serratia odorifera DSM 4582]
gi|291424190|gb|EFE97405.1| RNA methyltransferase Sun [Serratia odorifera DSM 4582]
Length = 429
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 48/112 (42%), Positives = 73/112 (65%), Gaps = 3/112 (2%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
+K FDRIL D PC+ +GV+RR+PDI WLRR DI +L+ +I++ +W LKPGG +++
Sbjct: 313 DKQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELASLQAEIMDAIWPHLKPGGVMVY 372
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLP---TVNKKQDYDGFFYS 132
TCS+ +E+ EQ + F + H D+ R+ + Q P + +D DGFFY+
Sbjct: 373 ATCSILPQENNEQVLAFLQRHADAQRVETGKQHQPGRQNLPHPEDGDGFFYA 424
>gi|268602401|ref|ZP_06136568.1| 16S RNA methyltransferase [Neisseria gonorrhoeae PID18]
gi|268604663|ref|ZP_06138830.1| 16S RNA methyltransferase [Neisseria gonorrhoeae PID1]
gi|291042746|ref|ZP_06568487.1| 16S RNA methyltransferase [Neisseria gonorrhoeae DGI2]
gi|268586532|gb|EEZ51208.1| 16S RNA methyltransferase [Neisseria gonorrhoeae PID18]
gi|268588794|gb|EEZ53470.1| 16S RNA methyltransferase [Neisseria gonorrhoeae PID1]
gi|291013180|gb|EFE05146.1| 16S RNA methyltransferase [Neisseria gonorrhoeae DGI2]
Length = 419
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 56/116 (48%), Positives = 75/116 (64%), Gaps = 5/116 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y K FD ILAD+PCT SGV RRNPD+ WLRR D K ++ +L+ LW++LK GG+
Sbjct: 308 WYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDALWQVLKQGGR 367
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
+L TCS++ EE++ Q F H D+ + S LLP NK Q DGF+Y+L QK
Sbjct: 368 MLLATCSVFVEENDGQLQKFLNRHADAEPIESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|349574641|ref|ZP_08886579.1| ribosomal RNA small subunit methyltransferase B [Neisseria
shayeganii 871]
gi|348013754|gb|EGY52660.1| ribosomal RNA small subunit methyltransferase B [Neisseria
shayeganii 871]
Length = 419
Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats.
Identities = 54/115 (46%), Positives = 74/115 (64%), Gaps = 5/115 (4%)
Query: 22 YKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKL 81
Y FD +LAD+PCT SGVVRR+PDI WLRR D K + +L+ LW+++KPGG++
Sbjct: 308 YDGPPFDAVLADVPCTASGVVRRHPDIKWLRRPQDAAKTAAQQTLLLDRLWQLVKPGGRM 367
Query: 82 LFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
L TCSL+ EE++ Q F + H D++ S LLP N +Q DGF+Y+L K
Sbjct: 368 LLATCSLFHEENDGQLQHFLQGHADAVCRRSE-TLLP--NDRQ--DGFYYALLDK 417
>gi|291612482|ref|YP_003522639.1| sun protein [Sideroxydans lithotrophicus ES-1]
gi|291582594|gb|ADE10252.1| sun protein [Sideroxydans lithotrophicus ES-1]
Length = 424
Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats.
Identities = 53/123 (43%), Positives = 79/123 (64%), Gaps = 10/123 (8%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ K F+RILAD+PC+ SGVVRR+PDI WLRR+ DI + ++L +LW +L GK
Sbjct: 305 WWDGKAFERILADVPCSASGVVRRHPDIKWLRRQEDIANFAVQQAQVLESLWSLLASDGK 364
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDS--IRLNSP----GQLLPTVNKKQDYDGFFYSLF 134
LL+ TCS++ E+++ F H D+ I L++ GQLLP +++DGFFY+L
Sbjct: 365 LLYATCSVFARENQQVVAEFLARHDDASKIELSATGMIDGQLLP----DREHDGFFYALL 420
Query: 135 QKR 137
K+
Sbjct: 421 HKQ 423
>gi|15676040|ref|NP_273170.1| 16S RNA methyltransferase [Neisseria meningitidis MC58]
gi|385852322|ref|YP_005898836.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis H44/76]
gi|416194642|ref|ZP_11617412.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis CU385]
gi|427826212|ref|ZP_18993271.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis H44/76]
gi|433464106|ref|ZP_20421600.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM422]
gi|433487310|ref|ZP_20444489.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis M13255]
gi|433489484|ref|ZP_20446623.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM418]
gi|433504087|ref|ZP_20461032.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 9506]
gi|433506164|ref|ZP_20463083.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 9757]
gi|433508428|ref|ZP_20465314.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 12888]
gi|433510380|ref|ZP_20467224.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 4119]
gi|7225328|gb|AAF40571.1| 16S RNA methyltransferase [Neisseria meningitidis MC58]
gi|316985958|gb|EFV64897.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis H44/76]
gi|325141257|gb|EGC63756.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis CU385]
gi|325199326|gb|ADY94781.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis H44/76]
gi|432205916|gb|ELK61931.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM422]
gi|432226075|gb|ELK81808.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis M13255]
gi|432230480|gb|ELK86155.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM418]
gi|432243470|gb|ELK98981.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 9506]
gi|432244180|gb|ELK99675.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 9757]
gi|432250079|gb|ELL05477.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 12888]
gi|432250658|gb|ELL06048.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 4119]
Length = 419
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 55/117 (47%), Positives = 76/117 (64%), Gaps = 5/117 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y K FD +LAD+PCT SGV RRNPD+ WLRR D K ++ +L+ LW++LK GG+
Sbjct: 308 WYDGKPFDAVLADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDALWQVLKSGGR 367
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
+L TCS++ EE++ Q F H D+ + S LLP NK Q DGF+Y+L QK+
Sbjct: 368 MLIATCSVFVEENDGQLQKFLNRHADAELIESR-VLLP--NKHQ--DGFYYALIQKQ 419
>gi|422110716|ref|ZP_16380630.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309378544|emb|CBX22816.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 419
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 56/116 (48%), Positives = 74/116 (63%), Gaps = 5/116 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y K FD ILAD+PCT SGV RRNPD+ WLRR D K ++ +L+ LW+ LK GG+
Sbjct: 308 WYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDALWQTLKQGGR 367
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
+L TCS++ EE++ Q F H D+ + S LLP NK Q DGF+Y+L QK
Sbjct: 368 MLLATCSVFVEENDGQLQKFLSRHNDAEPIESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|261400037|ref|ZP_05986162.1| ribosomal RNA small subunit methyltransferase B [Neisseria
lactamica ATCC 23970]
gi|269210259|gb|EEZ76714.1| ribosomal RNA small subunit methyltransferase B [Neisseria
lactamica ATCC 23970]
Length = 419
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 56/116 (48%), Positives = 74/116 (63%), Gaps = 5/116 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y K FD ILAD+PCT SGV RRNPD+ WLRR D K ++ +L+ LW+ LK GG+
Sbjct: 308 WYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDALWQTLKQGGR 367
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
+L TCS++ EE++ Q F H D+ + S LLP NK Q DGF+Y+L QK
Sbjct: 368 MLLATCSVFVEENDGQLQKFLSRHNDAEPIESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|375110116|ref|ZP_09756352.1| 16S rRNA methyltransferase B [Alishewanella jeotgali KCTC 22429]
gi|374569865|gb|EHR41012.1| 16S rRNA methyltransferase B [Alishewanella jeotgali KCTC 22429]
Length = 430
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 53/122 (43%), Positives = 76/122 (62%), Gaps = 9/122 (7%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+++ + FDRIL D+PC+ +GV+RR+PDI WLR+K DI L++ +IL W++LKPGG
Sbjct: 310 WWQGELFDRILLDVPCSATGVIRRHPDIRWLRKKTDIAPLTELQQQILQCAWRLLKPGGT 369
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRL------NSPGQLLPTVNKKQDYDGFFYSLF 134
LL+ TCS+ E+ Q F D+ L +S Q+LP +QD DGFFY+L
Sbjct: 370 LLYATCSVLPAENSAQLTQFLAQQNDASLLPLPELGSSSWQILP---GEQDMDGFFYALL 426
Query: 135 QK 136
K
Sbjct: 427 HK 428
>gi|421543514|ref|ZP_15989605.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM140]
gi|421545574|ref|ZP_15991634.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM183]
gi|421547643|ref|ZP_15993675.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM2781]
gi|421551850|ref|ZP_15997832.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM576]
gi|402325802|gb|EJU61209.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM183]
gi|402326356|gb|EJU61758.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM140]
gi|402327663|gb|EJU63050.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM2781]
gi|402333118|gb|EJU68433.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM576]
Length = 419
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 56/116 (48%), Positives = 74/116 (63%), Gaps = 5/116 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y K FD ILAD+PCT SGV RRNPD+ WLRR D K ++ +L+ LW+ LK GG+
Sbjct: 308 WYDGKPFDTILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDALWQTLKQGGR 367
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
+L TCS++ EE++ Q F H D+ + S LLP NK Q DGF+Y+L QK
Sbjct: 368 MLLATCSVFVEENDGQLQKFLNRHADAEPIESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|421907680|ref|ZP_16337555.1| Ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis alpha704]
gi|393291349|emb|CCI73554.1| Ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis alpha704]
Length = 419
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 56/116 (48%), Positives = 74/116 (63%), Gaps = 5/116 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y K FD ILAD+PCT SGV RRNPD+ WLRR D K ++ +L+ LW+ LK GG+
Sbjct: 308 WYDGKPFDTILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDALWQTLKQGGR 367
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
+L TCS++ EE++ Q F H D+ + S LLP NK Q DGF+Y+L QK
Sbjct: 368 MLLATCSVFVEENDGQLQKFLNRHADAEPIESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|418287313|ref|ZP_12899926.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM233]
gi|372203884|gb|EHP17481.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM233]
Length = 419
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 56/116 (48%), Positives = 74/116 (63%), Gaps = 5/116 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y K FD ILAD+PCT SGV RRNPD+ WLRR D K ++ +L+ LW+ LK GG+
Sbjct: 308 WYDGKPFDTILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDALWQTLKQGGR 367
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
+L TCS++ EE++ Q F H D+ + S LLP NK Q DGF+Y+L QK
Sbjct: 368 MLLATCSVFVEENDGQLQKFLNRHADAEPIESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|218767200|ref|YP_002341712.1| SUN-like protein [Neisseria meningitidis Z2491]
gi|385338991|ref|YP_005892864.1| ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase; 16S rRNA m5C967
methyltransferase) [Neisseria meningitidis WUE 2594]
gi|433474586|ref|ZP_20431934.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 88050]
gi|433478816|ref|ZP_20436115.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 63041]
gi|433512470|ref|ZP_20469272.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 63049]
gi|433514651|ref|ZP_20471427.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 2004090]
gi|433516697|ref|ZP_20473451.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 96023]
gi|433518890|ref|ZP_20475617.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 65014]
gi|433523067|ref|ZP_20479740.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 97020]
gi|433527274|ref|ZP_20483887.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM3652]
gi|433529365|ref|ZP_20485965.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM3642]
gi|433531487|ref|ZP_20488056.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 2007056]
gi|433533619|ref|ZP_20490168.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 2001212]
gi|433540045|ref|ZP_20496502.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 63006]
gi|121051208|emb|CAM07479.1| SUN homolog [Neisseria meningitidis Z2491]
gi|319411405|emb|CBY91816.1| ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase; 16S rRNA m5C967
methyltransferase) [Neisseria meningitidis WUE 2594]
gi|432212646|gb|ELK68581.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 88050]
gi|432218790|gb|ELK74642.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 63041]
gi|432250225|gb|ELL05620.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 63049]
gi|432256315|gb|ELL11638.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 2004090]
gi|432256489|gb|ELL11811.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 96023]
gi|432256855|gb|ELL12166.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 65014]
gi|432262940|gb|ELL18171.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 97020]
gi|432267343|gb|ELL22521.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM3652]
gi|432269507|gb|ELL24664.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 2007056]
gi|432270016|gb|ELL25163.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM3642]
gi|432274172|gb|ELL29265.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 2001212]
gi|432278026|gb|ELL33070.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 63006]
Length = 419
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 56/116 (48%), Positives = 74/116 (63%), Gaps = 5/116 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y K FD ILAD+PCT SGV RRNPD+ WLRR D K ++ +L+ LW+ LK GG+
Sbjct: 308 WYDGKPFDTILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDALWQTLKQGGR 367
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
+L TCS++ EE++ Q F H D+ + S LLP NK Q DGF+Y+L QK
Sbjct: 368 MLLATCSVFVEENDGQLQKFLNRHADAEPIESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|343496686|ref|ZP_08734778.1| 16S rRNA methyltransferase B [Vibrio nigripulchritudo ATCC 27043]
gi|342820883|gb|EGU55690.1| 16S rRNA methyltransferase B [Vibrio nigripulchritudo ATCC 27043]
Length = 426
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 53/127 (41%), Positives = 86/127 (67%), Gaps = 10/127 (7%)
Query: 17 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLK 76
N +++ + FDRIL D PC+ +GV+RR+PDI WLRR +DI+ L++ +IL+ +W+ LK
Sbjct: 303 NPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIEALAELQSEILDAMWQQLK 362
Query: 77 PGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIR-----LNSPG-QLLPTVNKKQDYDGFF 130
PGG L++ TCS+ +E++ Q I F + DS + L++PG Q+LP ++D DGF+
Sbjct: 363 PGGTLVYATCSITPQENKHQVIQFLE-RTDSAQLVGSELDNPGRQILP---GEEDMDGFY 418
Query: 131 YSLFQKR 137
Y++ K+
Sbjct: 419 YAVLTKK 425
>gi|433535712|ref|ZP_20492232.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 77221]
gi|432276723|gb|ELL31778.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 77221]
Length = 419
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 56/116 (48%), Positives = 74/116 (63%), Gaps = 5/116 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y K FD ILAD+PCT SGV RRNPD+ WLRR D K ++ +L+ LW+ LK GG+
Sbjct: 308 WYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDALWQTLKQGGR 367
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
+L TCS++ EE++ Q F H D+ + S LLP NK Q DGF+Y+L QK
Sbjct: 368 MLLATCSVFVEENDGQLQKFLNRHADAEPIESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|433472493|ref|ZP_20429863.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 97021]
gi|433480917|ref|ZP_20438189.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 2006087]
gi|433483041|ref|ZP_20440281.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 2002038]
gi|433485139|ref|ZP_20442346.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 97014]
gi|432212377|gb|ELK68315.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 97021]
gi|432219270|gb|ELK75117.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 2006087]
gi|432223871|gb|ELK79646.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 2002038]
gi|432224982|gb|ELK80742.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 97014]
Length = 419
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 56/116 (48%), Positives = 74/116 (63%), Gaps = 5/116 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y K FD ILAD+PCT SGV RRNPD+ WLRR D K ++ +L+ LW+ LK GG+
Sbjct: 308 WYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDALWQTLKQGGR 367
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
+L TCS++ EE++ Q F H D+ + S LLP NK Q DGF+Y+L QK
Sbjct: 368 MLLATCSVFVEENDGQLQKFLNRHADAEPIESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|433468310|ref|ZP_20425748.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 98080]
gi|432206646|gb|ELK62650.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 98080]
Length = 419
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 56/116 (48%), Positives = 74/116 (63%), Gaps = 5/116 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y K FD ILAD+PCT SGV RRNPD+ WLRR D K ++ +L+ LW+ LK GG+
Sbjct: 308 WYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDALWQTLKQGGR 367
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
+L TCS++ EE++ Q F H D+ + S LLP NK Q DGF+Y+L QK
Sbjct: 368 MLLATCSVFVEENDGQLQKFLNRHADAEPIESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|421566584|ref|ZP_16012327.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM3001]
gi|402345008|gb|EJU80135.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM3001]
Length = 419
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 56/116 (48%), Positives = 74/116 (63%), Gaps = 5/116 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y K FD ILAD+PCT SGV RRNPD+ WLRR D K ++ +L+ LW+ LK GG+
Sbjct: 308 WYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDALWQTLKQGGR 367
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
+L TCS++ EE++ Q F H D+ + S LLP NK Q DGF+Y+L QK
Sbjct: 368 MLLATCSVFVEENDGQLQKFLNRHADAEPIESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|421558163|ref|ZP_16004047.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 92045]
gi|402338557|gb|EJU73788.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 92045]
Length = 419
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 56/116 (48%), Positives = 74/116 (63%), Gaps = 5/116 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y K FD ILAD+PCT SGV RRNPD+ WLRR D K ++ +L+ LW+ LK GG+
Sbjct: 308 WYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDALWQTLKQGGR 367
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
+L TCS++ EE++ Q F H D+ + S LLP NK Q DGF+Y+L QK
Sbjct: 368 MLLATCSVFVEENDGQLQKFLNRHADAEPIESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|421556098|ref|ZP_16002015.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 80179]
gi|402337951|gb|EJU73190.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 80179]
Length = 419
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 56/116 (48%), Positives = 74/116 (63%), Gaps = 5/116 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y K FD ILAD+PCT SGV RRNPD+ WLRR D K ++ +L+ LW+ LK GG+
Sbjct: 308 WYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDALWQTLKQGGR 367
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
+L TCS++ EE++ Q F H D+ + S LLP NK Q DGF+Y+L QK
Sbjct: 368 MLLATCSVFVEENDGQLQKFLNRHADAEPIESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|421553861|ref|ZP_15999813.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 98008]
gi|402334219|gb|EJU69511.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 98008]
Length = 419
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 56/116 (48%), Positives = 74/116 (63%), Gaps = 5/116 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y K FD ILAD+PCT SGV RRNPD+ WLRR D K ++ +L+ LW+ LK GG+
Sbjct: 308 WYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDALWQTLKQGGR 367
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
+L TCS++ EE++ Q F H D+ + S LLP NK Q DGF+Y+L QK
Sbjct: 368 MLLATCSVFVEENDGQLQKFLNRHADAEPIESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|421549671|ref|ZP_15995681.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 69166]
gi|433470413|ref|ZP_20427813.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 68094]
gi|433476689|ref|ZP_20434017.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 70012]
gi|433520899|ref|ZP_20477601.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 61103]
gi|433525191|ref|ZP_20481837.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 69096]
gi|433537872|ref|ZP_20494359.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 70030]
gi|402331622|gb|EJU66954.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 69166]
gi|432211846|gb|ELK67790.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 68094]
gi|432217842|gb|ELK73707.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 70012]
gi|432262683|gb|ELL17918.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 61103]
gi|432263339|gb|ELL18559.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 69096]
gi|432276012|gb|ELL31074.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 70030]
Length = 419
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 56/116 (48%), Positives = 74/116 (63%), Gaps = 5/116 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y K FD ILAD+PCT SGV RRNPD+ WLRR D K ++ +L+ LW+ LK GG+
Sbjct: 308 WYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDALWQTLKQGGR 367
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
+L TCS++ EE++ Q F H D+ + S LLP NK Q DGF+Y+L QK
Sbjct: 368 MLLATCSVFVEENDGQLQKFLNRHADAEPIESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|416211456|ref|ZP_11621382.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis M01-240013]
gi|325145434|gb|EGC67710.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis M01-240013]
Length = 419
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 56/116 (48%), Positives = 74/116 (63%), Gaps = 5/116 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y K FD ILAD+PCT SGV RRNPD+ WLRR D K ++ +L+ LW+ LK GG+
Sbjct: 308 WYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDALWQTLKQGGR 367
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
+L TCS++ EE++ Q F H D+ + S LLP NK Q DGF+Y+L QK
Sbjct: 368 MLLATCSVFVEENDGQLQKFLNRHADAEPIESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|416159205|ref|ZP_11605681.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis N1568]
gi|325129148|gb|EGC51996.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis N1568]
Length = 419
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 56/116 (48%), Positives = 74/116 (63%), Gaps = 5/116 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y K FD ILAD+PCT SGV RRNPD+ WLRR D K ++ +L+ LW+ LK GG+
Sbjct: 308 WYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDALWQTLKQGGR 367
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
+L TCS++ EE++ Q F H D+ + S LLP NK Q DGF+Y+L QK
Sbjct: 368 MLLATCSVFVEENDGQLQKFLNRHADAEPIESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|313667408|ref|YP_004047692.1| SUN-family protein [Neisseria lactamica 020-06]
gi|313004870|emb|CBN86296.1| SUN-family protein [Neisseria lactamica 020-06]
Length = 419
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 56/116 (48%), Positives = 74/116 (63%), Gaps = 5/116 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y K FD ILAD+PCT SGV RRNPD+ WLRR D K ++ +L+ LW+ LK GG+
Sbjct: 308 WYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDALWQTLKQGGR 367
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
+L TCS++ EE++ Q F H D+ + S LLP NK Q DGF+Y+L QK
Sbjct: 368 MLLATCSVFVEENDGQLQKFLNRHADAEPIESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|385327478|ref|YP_005881781.1| rsmB 16S RNA methyltransferase [Neisseria meningitidis alpha710]
gi|308388330|gb|ADO30650.1| rsmB 16S RNA methyltransferase [Neisseria meningitidis alpha710]
Length = 419
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 56/116 (48%), Positives = 74/116 (63%), Gaps = 5/116 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y K FD ILAD+PCT SGV RRNPD+ WLRR D K ++ +L+ LW+ LK GG+
Sbjct: 308 WYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDALWQTLKQGGR 367
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
+L TCS++ EE++ Q F H D+ + S LLP NK Q DGF+Y+L QK
Sbjct: 368 MLLATCSVFVEENDGQLQKFLNRHADAEPIESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|304388913|ref|ZP_07370960.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis ATCC 13091]
gi|385854290|ref|YP_005900803.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis M01-240355]
gi|418289565|ref|ZP_12901834.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM220]
gi|421541457|ref|ZP_15987574.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM255]
gi|421562339|ref|ZP_16008166.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM2795]
gi|304337047|gb|EFM03234.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis ATCC 13091]
gi|325203231|gb|ADY98684.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis M01-240355]
gi|372203320|gb|EHP17019.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM220]
gi|402319826|gb|EJU55330.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM255]
gi|402342995|gb|EJU78150.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM2795]
Length = 419
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 56/116 (48%), Positives = 74/116 (63%), Gaps = 5/116 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y K FD ILAD+PCT SGV RRNPD+ WLRR D K ++ +L+ LW+ LK GG+
Sbjct: 308 WYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDALWQTLKQGGR 367
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
+L TCS++ EE++ Q F H D+ + S LLP NK Q DGF+Y+L QK
Sbjct: 368 MLLATCSVFVEENDGQLQKFLNRHADAEPIESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|385323263|ref|YP_005877702.1| ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase; 16S rRNA m5C967
methyltransferase) [Neisseria meningitidis 8013]
gi|261391650|emb|CAX49098.1| ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase; 16S rRNA m5C967
methyltransferase) [Neisseria meningitidis 8013]
Length = 419
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 56/116 (48%), Positives = 74/116 (63%), Gaps = 5/116 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y K FD ILAD+PCT SGV RRNPD+ WLRR D K ++ +L+ LW+ LK GG+
Sbjct: 308 WYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDALWQTLKQGGR 367
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
+L TCS++ EE++ Q F H D+ + S LLP NK Q DGF+Y+L QK
Sbjct: 368 MLLATCSVFVEENDGQLQKFLNRHADAEPIESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|254672816|emb|CBA06959.1| Sun protein [Neisseria meningitidis alpha275]
Length = 419
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 56/116 (48%), Positives = 74/116 (63%), Gaps = 5/116 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y K FD ILAD+PCT SGV RRNPD+ WLRR D K ++ +L+ LW+ LK GG+
Sbjct: 308 WYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDALWQTLKQGGR 367
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
+L TCS++ EE++ Q F H D+ + S LLP NK Q DGF+Y+L QK
Sbjct: 368 MLLATCSVFVEENDGQLQKFLNRHADAEPIESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|254805842|ref|YP_003084063.1| Sun protein [Neisseria meningitidis alpha14]
gi|385850382|ref|YP_005896897.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis M04-240196]
gi|254669384|emb|CBA08529.1| Sun protein [Neisseria meningitidis alpha14]
gi|325205205|gb|ADZ00658.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis M04-240196]
Length = 419
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 56/116 (48%), Positives = 74/116 (63%), Gaps = 5/116 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y K FD ILAD+PCT SGV RRNPD+ WLRR D K ++ +L+ LW+ LK GG+
Sbjct: 308 WYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDALWQTLKQGGR 367
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
+L TCS++ EE++ Q F H D+ + S LLP NK Q DGF+Y+L QK
Sbjct: 368 MLLATCSVFVEENDGQLQKFLNRHADAEPIESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|161870942|ref|YP_001600122.1| 16S RNA methyltransferase [Neisseria meningitidis 053442]
gi|161596495|gb|ABX74155.1| 16S RNA methyltransferase [Neisseria meningitidis 053442]
Length = 419
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 56/116 (48%), Positives = 74/116 (63%), Gaps = 5/116 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y K FD ILAD+PCT SGV RRNPD+ WLRR D K ++ +L+ LW+ LK GG+
Sbjct: 308 WYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDALWQTLKQGGR 367
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
+L TCS++ EE++ Q F H D+ + S LLP NK Q DGF+Y+L QK
Sbjct: 368 MLLATCSVFVEENDGQLQKFLNRHADAEPIESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|121633990|ref|YP_974235.1| SUN-family protein [Neisseria meningitidis FAM18]
gi|385339157|ref|YP_005893029.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis G2136]
gi|416176244|ref|ZP_11609545.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis M6190]
gi|416190860|ref|ZP_11615971.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis ES14902]
gi|416199749|ref|ZP_11619458.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 961-5945]
gi|421539309|ref|ZP_15985471.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 93004]
gi|421560264|ref|ZP_16006123.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM2657]
gi|433466229|ref|ZP_20423692.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 87255]
gi|433491585|ref|ZP_20448688.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM586]
gi|433493707|ref|ZP_20450783.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM762]
gi|433495823|ref|ZP_20452872.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis M7089]
gi|433497823|ref|ZP_20454840.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis M7124]
gi|433499895|ref|ZP_20456888.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM174]
gi|433501993|ref|ZP_20458966.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM126]
gi|120865696|emb|CAM09423.1| SUN-family protein [Neisseria meningitidis FAM18]
gi|254671147|emb|CBA08200.1| Sun protein [Neisseria meningitidis alpha153]
gi|325133179|gb|EGC55850.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis M6190]
gi|325138791|gb|EGC61343.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis ES14902]
gi|325143273|gb|EGC65611.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 961-5945]
gi|325197401|gb|ADY92857.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis G2136]
gi|402321889|gb|EJU57360.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 93004]
gi|402340437|gb|EJU75637.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM2657]
gi|432205017|gb|ELK61048.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 87255]
gi|432231270|gb|ELK86937.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM586]
gi|432231885|gb|ELK87540.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM762]
gi|432237006|gb|ELK92606.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis M7124]
gi|432237465|gb|ELK93058.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis M7089]
gi|432237963|gb|ELK93548.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM174]
gi|432243748|gb|ELK99254.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NM126]
Length = 419
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 56/116 (48%), Positives = 74/116 (63%), Gaps = 5/116 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y K FD ILAD+PCT SGV RRNPD+ WLRR D K ++ +L+ LW+ LK GG+
Sbjct: 308 WYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDALWQTLKQGGR 367
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
+L TCS++ EE++ Q F H D+ + S LLP NK Q DGF+Y+L QK
Sbjct: 368 MLLATCSVFVEENDGQLQKFLNRHADAEPIESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|442771599|gb|AGC72281.1| ribosomal RNA small subunit methyltransferase B [uncultured
bacterium A1Q1_fos_1266]
Length = 447
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 53/125 (42%), Positives = 78/125 (62%), Gaps = 9/125 (7%)
Query: 23 KNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLL 82
+ F+ IL D PC+ SG+VRR+PD WLRR+ DI +L+ K+LN LW+ L+PGG+LL
Sbjct: 322 RKSRFNAILLDAPCSASGIVRRHPDSRWLRRETDIAQLASIQWKLLNTLWQYLQPGGRLL 381
Query: 83 FVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTV---------NKKQDYDGFFYSL 133
+ TCS++ E E+Q F ++K + L S G L+ NK +++DGFFY+L
Sbjct: 382 YCTCSVFKAEGEDQINKFLDSNKYATLLPSHGHLISIRDAISGTSEDNKLKNHDGFFYAL 441
Query: 134 FQKRK 138
+K K
Sbjct: 442 LEKAK 446
>gi|385342847|ref|YP_005896718.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis M01-240149]
gi|385856260|ref|YP_005902772.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NZ-05/33]
gi|416167585|ref|ZP_11607683.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis OX99.30304]
gi|416186059|ref|ZP_11613508.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis M0579]
gi|325131147|gb|EGC53868.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis OX99.30304]
gi|325137171|gb|EGC59766.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis M0579]
gi|325203053|gb|ADY98507.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis M01-240149]
gi|325207149|gb|ADZ02601.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NZ-05/33]
Length = 419
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 55/116 (47%), Positives = 75/116 (64%), Gaps = 5/116 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y K FD +LAD+PCT SGV RRNPD+ WLRR D K ++ +L+ LW++LK GG+
Sbjct: 308 WYDGKPFDAVLADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDALWQVLKSGGR 367
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
+L TCS++ EE++ Q F H D+ + S LLP NK Q DGF+Y+L QK
Sbjct: 368 MLIATCSVFVEENDGQLQKFLNRHADAELIESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|59802189|ref|YP_208901.1| 16S RNA methyltransferase [Neisseria gonorrhoeae FA 1090]
gi|59719084|gb|AAW90489.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae FA 1090]
Length = 419
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 56/116 (48%), Positives = 74/116 (63%), Gaps = 5/116 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y K FD ILAD+PCT SGV RRNPD+ WLRR D K ++ +L+ LW+ LK GG+
Sbjct: 308 WYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDALWQALKQGGR 367
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
+L TCS++ EE++ Q F H D+ + S LLP NK Q DGF+Y+L QK
Sbjct: 368 MLLATCSVFVEENDGQLQKFLNRHADAEPIESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|268687548|ref|ZP_06154410.1| 16S RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035]
gi|268627832|gb|EEZ60232.1| 16S RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035]
Length = 419
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 56/116 (48%), Positives = 74/116 (63%), Gaps = 5/116 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y K FD ILAD+PCT SGV RRNPD+ WLRR D K ++ +L+ LW+ LK GG+
Sbjct: 308 WYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDALWQALKQGGR 367
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
+L TCS++ EE++ Q F H D+ + S LLP NK Q DGF+Y+L QK
Sbjct: 368 MLLATCSVFVEENDGQLQKFLNRHADAEPIESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|240015126|ref|ZP_04722039.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae DGI18]
gi|268600059|ref|ZP_06134226.1| 16S RNA methyltransferase [Neisseria gonorrhoeae MS11]
gi|268584190|gb|EEZ48866.1| 16S RNA methyltransferase [Neisseria gonorrhoeae MS11]
Length = 419
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 56/116 (48%), Positives = 74/116 (63%), Gaps = 5/116 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y K FD ILAD+PCT SGV RRNPD+ WLRR D K ++ +L+ LW+ LK GG+
Sbjct: 308 WYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDALWQALKQGGR 367
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
+L TCS++ EE++ Q F H D+ + S LLP NK Q DGF+Y+L QK
Sbjct: 368 MLLATCSVFVEENDGQLQKFLNRHADAEPIESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|410088703|ref|ZP_11285392.1| Ribosomal RNA small subunit methyltransferase B [Morganella
morganii SC01]
gi|409764838|gb|EKN48966.1| Ribosomal RNA small subunit methyltransferase B [Morganella
morganii SC01]
Length = 430
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 54/137 (39%), Positives = 87/137 (63%), Gaps = 8/137 (5%)
Query: 6 IESSDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKY 63
++ + + K + R+ ++ +++ FDRIL D PC+ +GV+RR+PDI WLRR NDI +L+
Sbjct: 293 LKQNAVVKTGDGRYPEQWAESQIFDRILLDAPCSATGVIRRHPDIKWLRRDNDINELAAL 352
Query: 64 SCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPG---QLLPTV 120
+IL+ +W LKPGG L++ TCS+ EE+ Q F +H+D++ ++P Q+LP
Sbjct: 353 QREILDAVWPYLKPGGTLVYATCSVLPEENIHQINNFLSSHRDAVLTDTPATGYQMLPDA 412
Query: 121 NKKQDYDGFFYSLFQKR 137
Q DGFFY+ K+
Sbjct: 413 ---QSGDGFFYAKLVKQ 426
>gi|293398234|ref|ZP_06642439.1| ribosomal RNA small subunit methyltransferase B [Neisseria
gonorrhoeae F62]
gi|291611497|gb|EFF40567.1| ribosomal RNA small subunit methyltransferase B [Neisseria
gonorrhoeae F62]
Length = 419
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 56/116 (48%), Positives = 74/116 (63%), Gaps = 5/116 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y K FD ILAD+PCT SGV RRNPD+ WLRR D K ++ +L+ LW+ LK GG+
Sbjct: 308 WYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARRQEALLDALWQALKQGGR 367
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
+L TCS++ EE++ Q F H D+ + S LLP NK Q DGF+Y+L QK
Sbjct: 368 MLLATCSVFVEENDGQLQKFLNRHADAEPIESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|268597816|ref|ZP_06131983.1| 16S RNA methyltransferase [Neisseria gonorrhoeae FA19]
gi|268683121|ref|ZP_06149983.1| 16S RNA methyltransferase [Neisseria gonorrhoeae PID332]
gi|385336805|ref|YP_005890752.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae
TCDC-NG08107]
gi|268551604|gb|EEZ46623.1| 16S RNA methyltransferase [Neisseria gonorrhoeae FA19]
gi|268623405|gb|EEZ55805.1| 16S RNA methyltransferase [Neisseria gonorrhoeae PID332]
gi|317165348|gb|ADV08889.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 419
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 56/116 (48%), Positives = 74/116 (63%), Gaps = 5/116 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y K FD ILAD+PCT SGV RRNPD+ WLRR D K ++ +L+ LW+ LK GG+
Sbjct: 308 WYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARRQEALLDALWQALKQGGR 367
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
+L TCS++ EE++ Q F H D+ + S LLP NK Q DGF+Y+L QK
Sbjct: 368 MLLATCSVFVEENDGQLQKFLNRHADAEPIESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|268593745|ref|ZP_06127912.1| 16S RNA methyltransferase [Neisseria gonorrhoeae 35/02]
gi|268683215|ref|ZP_06150077.1| 16S RNA methyltransferase [Neisseria gonorrhoeae SK-92-679]
gi|268547134|gb|EEZ42552.1| 16S RNA methyltransferase [Neisseria gonorrhoeae 35/02]
gi|268623499|gb|EEZ55899.1| 16S RNA methyltransferase [Neisseria gonorrhoeae SK-92-679]
Length = 419
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 56/116 (48%), Positives = 74/116 (63%), Gaps = 5/116 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y K FD ILAD+PCT SGV RRNPD+ WLRR D K ++ +L+ LW+ LK GG+
Sbjct: 308 WYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARRQEALLDALWQALKQGGR 367
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
+L TCS++ EE++ Q F H D+ + S LLP NK Q DGF+Y+L QK
Sbjct: 368 MLLATCSVFVEENDGQLQKFLNRHADAEPIESR-VLLP--NKHQ--DGFYYALIQK 418
>gi|261378986|ref|ZP_05983559.1| ribosomal RNA small subunit methyltransferase B [Neisseria cinerea
ATCC 14685]
gi|269144601|gb|EEZ71019.1| ribosomal RNA small subunit methyltransferase B [Neisseria cinerea
ATCC 14685]
Length = 419
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 55/117 (47%), Positives = 76/117 (64%), Gaps = 5/117 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y K FD +LAD+PCT SGV RRNPD+ WLRR D K ++ +L+ LW++LK GG+
Sbjct: 308 WYDGKPFDAVLADVPCTASGVARRNPDVKWLRRPTDGMKTARQQEALLDALWQVLKSGGR 367
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
+L TCS++ EE++ Q F H D+ + S LLP NK Q DGF+Y+L QK+
Sbjct: 368 MLIATCSVFVEENDGQLQKFLNRHADAELIESR-VLLP--NKHQ--DGFYYALIQKQ 419
>gi|421494913|ref|ZP_15942250.1| hypothetical protein MU9_3422 [Morganella morganii subsp. morganii
KT]
gi|455737432|ref|YP_007503698.1| Ribosomal RNA small subunit methyltransferase B [Morganella
morganii subsp. morganii KT]
gi|400190802|gb|EJO23961.1| hypothetical protein MU9_3422 [Morganella morganii subsp. morganii
KT]
gi|455418995|gb|AGG29325.1| Ribosomal RNA small subunit methyltransferase B [Morganella
morganii subsp. morganii KT]
Length = 430
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 54/137 (39%), Positives = 87/137 (63%), Gaps = 8/137 (5%)
Query: 6 IESSDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKY 63
++ + + K + R+ ++ +++ FDRIL D PC+ +GV+RR+PDI WLRR NDI +L+
Sbjct: 293 LKQNAVVKTGDGRYPEQWAESQTFDRILLDAPCSATGVIRRHPDIKWLRRDNDINELAAL 352
Query: 64 SCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPG---QLLPTV 120
+IL+ +W LKPGG L++ TCS+ EE+ Q F +H+D++ ++P Q+LP
Sbjct: 353 QREILDAVWPYLKPGGTLVYATCSVLPEENIHQINNFLSSHRDAVLTDTPATGYQMLPDA 412
Query: 121 NKKQDYDGFFYSLFQKR 137
Q DGFFY+ K+
Sbjct: 413 ---QSGDGFFYAKLVKQ 426
>gi|240017576|ref|ZP_04724116.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae FA6140]
gi|240122197|ref|ZP_04735159.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae PID24-1]
Length = 417
Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 74/117 (63%), Gaps = 5/117 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y K FD ILAD+PCT SGV RRNPD+ WLRR D K ++ +L+ LW+ LK GG+
Sbjct: 306 WYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDALWQALKQGGR 365
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
+L TCS++ EE++ Q F H D+ + S LLP NK Q DGF+Y+L QK
Sbjct: 366 MLLATCSVFVEENDGQLQKFLNRHADAEPIES-RVLLP--NKHQ--DGFYYALIQKH 417
>gi|238021729|ref|ZP_04602155.1| hypothetical protein GCWU000324_01632 [Kingella oralis ATCC 51147]
gi|237866343|gb|EEP67385.1| hypothetical protein GCWU000324_01632 [Kingella oralis ATCC 51147]
Length = 418
Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats.
Identities = 52/116 (44%), Positives = 77/116 (66%), Gaps = 5/116 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y + FD ILAD+PCT SG ++RNPDI WLRR D K ++ +L+ LW LK GG+
Sbjct: 307 WYNGEPFDAILADIPCTASGTIKRNPDIKWLRRPGDAYKTARQQEPLLDALWTTLKSGGR 366
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
+L TCS++ EE+++Q F H D+ RL++ L+P+ +KQ DGF+Y+L +K
Sbjct: 367 MLLATCSVFEEENQQQCHRFLNRHADA-RLHTEQTLIPS--EKQ--DGFYYALIEK 417
>gi|312882737|ref|ZP_07742472.1| ribosomal RNA small subunit methyltransferase B [Vibrio
caribbenthicus ATCC BAA-2122]
gi|309369595|gb|EFP97112.1| ribosomal RNA small subunit methyltransferase B [Vibrio
caribbenthicus ATCC BAA-2122]
Length = 426
Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats.
Identities = 53/139 (38%), Positives = 91/139 (65%), Gaps = 8/139 (5%)
Query: 5 EIESSDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYS 64
++ ++ I N +++ + FDRIL D PC+ +GV+RR+PDI WLRR DI L++
Sbjct: 291 QLNATVICGDARNPEEWWQGEKFDRILLDAPCSATGVIRRHPDIKWLRRAEDIHALAQLQ 350
Query: 65 CKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIF-SKNHKDSI---RLNSPG-QLLPT 119
+IL+ +W+ LKPGG L++ TCS+ +E+++Q F ++ + S+ +L +PG Q+LP
Sbjct: 351 SEILDAMWQQLKPGGTLVYATCSITPQENKDQVKAFLTRTCEASLIGSKLENPGRQILP- 409
Query: 120 VNKKQDYDGFFYSLFQKRK 138
++D DGF+Y++ +K K
Sbjct: 410 --GERDMDGFYYAVIKKAK 426
>gi|418531359|ref|ZP_13097274.1| 16S rRNA methyltransferase B [Comamonas testosteroni ATCC 11996]
gi|371451649|gb|EHN64686.1| 16S rRNA methyltransferase B [Comamonas testosteroni ATCC 11996]
Length = 461
Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats.
Identities = 48/119 (40%), Positives = 73/119 (61%), Gaps = 9/119 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FD IL D PCT SG+VRR PD+ WLRR++D+ +L+ ++L+ LW +L+PGG +++ TC
Sbjct: 341 FDAILLDAPCTASGIVRRQPDVRWLRRESDVAQLADIQSRLLDTLWPLLQPGGCMVYCTC 400
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQ---------DYDGFFYSLFQK 136
S++ E + Q F + + L +PG L+P K D+DGFFY+L +K
Sbjct: 401 SVFKAEGDAQMQAFLARNTTAASLPAPGHLIPGKAAKHDSVADNPLGDHDGFFYALLEK 459
>gi|253997900|ref|YP_003049963.1| sun protein [Methylovorus glucosetrophus SIP3-4]
gi|253984579|gb|ACT49436.1| sun protein [Methylovorus glucosetrophus SIP3-4]
Length = 427
Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats.
Identities = 53/121 (43%), Positives = 73/121 (60%), Gaps = 5/121 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRILAD+PCT SG+VRR+ DI WLRR+ D+ + IL LW+ L GGK
Sbjct: 306 WWDGRPFDRILADVPCTASGIVRRHVDIKWLRREADVASFVRQQALILPQLWQCLAKGGK 365
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDY-----DGFFYSLFQ 135
LL+ TCS++ EE+++Q F + H D+ +L P Q Y DGFFY+L Q
Sbjct: 366 LLYATCSVFHEENQQQIDRFLQQHADAKQLPLSQDASPHARHGQFYPCAAHDGFFYALLQ 425
Query: 136 K 136
K
Sbjct: 426 K 426
>gi|218666805|ref|YP_002424535.1| sun protein [Acidithiobacillus ferrooxidans ATCC 23270]
gi|415985297|ref|ZP_11559559.1| 16S rRNA methyltransferase B [Acidithiobacillus sp. GGI-221]
gi|218519018|gb|ACK79604.1| sun protein [Acidithiobacillus ferrooxidans ATCC 23270]
gi|339834718|gb|EGQ62460.1| 16S rRNA methyltransferase B [Acidithiobacillus sp. GGI-221]
Length = 434
Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats.
Identities = 50/118 (42%), Positives = 75/118 (63%), Gaps = 5/118 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + +D IL D PCTG+GV+RR+PDI R+ D+ + ++L LW L+PGG+
Sbjct: 316 WWNGETYDAILLDAPCTGTGVIRRHPDIRLRRQPEDVAEAVAQQARLLEGLWPCLRPGGR 375
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSP--GQLLPTVNKKQDYDGFFYSLFQK 136
LL+ TCS+ EE+EEQ F + H D+ R+ P GQ LP ++D DGF+Y+L +K
Sbjct: 376 LLYATCSVLPEENEEQIAAFVQRHSDARRMAHPLTGQRLP---GQEDMDGFYYALLEK 430
>gi|198282170|ref|YP_002218491.1| sun protein [Acidithiobacillus ferrooxidans ATCC 53993]
gi|198246691|gb|ACH82284.1| sun protein [Acidithiobacillus ferrooxidans ATCC 53993]
Length = 431
Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats.
Identities = 50/118 (42%), Positives = 75/118 (63%), Gaps = 5/118 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + +D IL D PCTG+GV+RR+PDI R+ D+ + ++L LW L+PGG+
Sbjct: 313 WWNGETYDAILLDAPCTGTGVIRRHPDIRLRRQPEDVAEAVAQQARLLEGLWPCLRPGGR 372
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSP--GQLLPTVNKKQDYDGFFYSLFQK 136
LL+ TCS+ EE+EEQ F + H D+ R+ P GQ LP ++D DGF+Y+L +K
Sbjct: 373 LLYATCSVLPEENEEQIAAFVQRHSDARRMAHPLTGQRLP---GQEDMDGFYYALLEK 427
>gi|194099888|ref|YP_002003025.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae
NCCP11945]
gi|193935178|gb|ACF31002.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae
NCCP11945]
Length = 417
Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 74/117 (63%), Gaps = 5/117 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y K FD ILAD+PCT SGV RRNPD+ WLRR D K ++ +L+ LW+ LK GG+
Sbjct: 306 WYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARRQEALLDALWQALKQGGR 365
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
+L TCS++ EE++ Q F H D+ + S LLP NK Q DGF+Y+L QK
Sbjct: 366 MLLATCSVFVEENDGQLQKFLNRHADAEPIES-RVLLP--NKHQ--DGFYYALIQKH 417
>gi|171464329|ref|YP_001798442.1| Fmu (Sun) domain-containing protein [Polynucleobacter necessarius
subsp. necessarius STIR1]
gi|171193867|gb|ACB44828.1| Fmu (Sun) domain protein [Polynucleobacter necessarius subsp.
necessarius STIR1]
Length = 417
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 80/133 (60%), Gaps = 19/133 (14%)
Query: 1 MIAGEIESSDINKKTNN--RFRFYKNKY-----------------FDRILADLPCTGSGV 41
M A E++ I K N R R + +K FD+IL D PC+ SG+
Sbjct: 285 MRALELDGERIGKIGGNLDRLRLHSDKVRVLRGDASKAAWWDGTPFDKILLDAPCSVSGI 344
Query: 42 VRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFS 101
V R+PDIP+LRR+ D++ L + ILN WKMLK GG LL+VTCS++ EE E++A F+
Sbjct: 345 VARHPDIPFLRREADVRALQERQRAILNQAWKMLKSGGALLYVTCSIFVEEGEDKANWFT 404
Query: 102 KNHKDSIRLNSPG 114
+ H +++RL++PG
Sbjct: 405 EQHPNAVRLDAPG 417
>gi|308047743|ref|YP_003911309.1| 16S rRNA m(5)C967 methyltransferase [Ferrimonas balearica DSM 9799]
gi|307629933|gb|ADN74235.1| 16S rRNA m(5)C-967 methyltransferase [Ferrimonas balearica DSM
9799]
Length = 441
Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats.
Identities = 55/128 (42%), Positives = 80/128 (62%), Gaps = 12/128 (9%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRIL D PC+ +GV+RRNPD WLRR DI +L++ KIL W+MLKPGG
Sbjct: 311 WWDGQAFDRILLDAPCSATGVIRRNPDSKWLRRDEDIAQLAELQGKILRACWQMLKPGGT 370
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSI--------RLNSPG-QLLPTVNKKQDYDGFFY 131
L++ TCS+ +E+ +Q F +N D++ +PG QLLPTV + DGF+Y
Sbjct: 371 LVYATCSVLPDENVQQIQAFLQNTPDAMLDPIVAGEDDTTPGWQLLPTV---EGGDGFYY 427
Query: 132 SLFQKRKE 139
+ KR++
Sbjct: 428 ARLIKRQD 435
>gi|377579903|ref|ZP_09808861.1| ribosomal RNA small subunit methyltransferase B [Escherichia
hermannii NBRC 105704]
gi|377538770|dbj|GAB54026.1| ribosomal RNA small subunit methyltransferase B [Escherichia
hermannii NBRC 105704]
Length = 430
Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats.
Identities = 58/133 (43%), Positives = 84/133 (63%), Gaps = 11/133 (8%)
Query: 13 KKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNN 70
K+ + R+ ++ +NK FDRIL D PC+ +GV+RR+PDI WLRR DI +L+ +IL+
Sbjct: 300 KQGDGRYPQQWCENKQFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAALQSQILDA 359
Query: 71 LWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS-IRL----NSPG-QLLPTVNKKQ 124
+W +LKPGG LL+ TCS+ EE+ +Q F K D+ + L +SPG Q LP
Sbjct: 360 IWPLLKPGGTLLYATCSVLPEENTQQVAAFLKRTPDAQLTLTGTPDSPGIQNLPA---ST 416
Query: 125 DYDGFFYSLFQKR 137
+ DGFFY+ K+
Sbjct: 417 EGDGFFYAKLLKK 429
>gi|428934983|ref|ZP_19008481.1| 16S rRNA methyltransferase B, partial [Klebsiella pneumoniae JHCK1]
gi|426301668|gb|EKV63900.1| 16S rRNA methyltransferase B, partial [Klebsiella pneumoniae JHCK1]
Length = 262
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 58/134 (43%), Positives = 82/134 (61%), Gaps = 11/134 (8%)
Query: 13 KKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNN 70
K+ + RF ++ N+ FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +ILN
Sbjct: 131 KQGDGRFPEQWCGNEQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILNA 190
Query: 71 LWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS-----IRLNSPGQL-LPTVNKKQ 124
+W LKPGG L++ TCS+ EE+ +Q F D+ SPGQ LP V +
Sbjct: 191 IWGHLKPGGTLVYATCSILPEENSQQIAAFLARTPDAELHATGTPASPGQQNLPGV---E 247
Query: 125 DYDGFFYSLFQKRK 138
+ DGFFY+ KR+
Sbjct: 248 EGDGFFYAKLIKRR 261
>gi|319945038|ref|ZP_08019300.1| RNA methyltransferase Sun [Lautropia mirabilis ATCC 51599]
gi|319741608|gb|EFV94033.1| RNA methyltransferase Sun [Lautropia mirabilis ATCC 51599]
Length = 491
Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats.
Identities = 51/129 (39%), Positives = 78/129 (60%), Gaps = 11/129 (8%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRIL D PC+ SG+VRR+PD+ W R++ DI S ++L LW +L+PGG
Sbjct: 363 WWDGRPFDRILLDAPCSASGIVRRHPDVLWHRQRRDIATFSATQARLLEKLWPLLRPGGT 422
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKD-----SIRL----NSP--GQLLPTVNKKQDYDGF 129
LL+ TCS++ EE E+ F+ D +R+ + P GQLLP ++ ++DGF
Sbjct: 423 LLYATCSIFPEEGEKVVSAFASRQADCRWQREVRVPGWADWPQGGQLLPRSDELHEHDGF 482
Query: 130 FYSLFQKRK 138
FY+L K +
Sbjct: 483 FYALLSKHQ 491
>gi|404379652|ref|ZP_10984707.1| ribosomal RNA small subunit methyltransferase B [Simonsiella
muelleri ATCC 29453]
gi|294483136|gb|EFG30823.1| ribosomal RNA small subunit methyltransferase B [Simonsiella
muelleri ATCC 29453]
Length = 421
Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats.
Identities = 57/121 (47%), Positives = 77/121 (63%), Gaps = 5/121 (4%)
Query: 17 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLK 76
N ++ + FD ILAD+PCT SG ++RNPDI WLRR D K +K +L+ LW LK
Sbjct: 303 NVHEWWDGQPFDAILADVPCTASGTMKRNPDIKWLRRPTDALKTAKQQEAMLDELWGTLK 362
Query: 77 PGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
GG++L TCS++ EE+ Q F+K H D+I L LLP N+KQ DGF+Y+LF K
Sbjct: 363 VGGRMLLATCSIFAEENSLQCQKFNKRHNDAI-LQEEKMLLP--NEKQ--DGFYYALFVK 417
Query: 137 R 137
+
Sbjct: 418 Q 418
>gi|3288669|dbj|BAA31227.1| Fmv [Vibrio alginolyticus]
Length = 225
Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 84/138 (60%), Gaps = 8/138 (5%)
Query: 6 IESSDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSC 65
+++ + N +++ + FDRIL D PC+ +GV+RR+PDI WLRR +DI L++
Sbjct: 90 LQAKVVCGDARNPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQS 149
Query: 66 KILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTV 120
+I + +W LKPGG +++ TCS+ +E+ EQ F D+ L+S PG Q+LP
Sbjct: 150 EIFDAMWTQLKPGGTMVYATCSITPQENVEQVKAFLARTADAQLLDSDPDQPGRQILP-- 207
Query: 121 NKKQDYDGFFYSLFQKRK 138
++D DGF+Y++ K +
Sbjct: 208 -GEEDMDGFYYAVLTKTR 224
>gi|397168812|ref|ZP_10492248.1| 16S rRNA methyltransferase B [Alishewanella aestuarii B11]
gi|396089399|gb|EJI86973.1| 16S rRNA methyltransferase B [Alishewanella aestuarii B11]
Length = 430
Score = 108 bits (269), Expect = 8e-22, Method: Composition-based stats.
Identities = 53/122 (43%), Positives = 76/122 (62%), Gaps = 9/122 (7%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+++ + FDRIL D+PC+ +GV+RR+PDI WLR+K DI L+ +IL W++LKPGG
Sbjct: 310 WWQGELFDRILLDVPCSATGVIRRHPDIRWLRKKADIAPLTVLQQQILQCAWQLLKPGGT 369
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPG------QLLPTVNKKQDYDGFFYSLF 134
LL+ TCS+ E+ Q F D+ ++ P Q+LP +QD DGFFY+L
Sbjct: 370 LLYATCSVLPAENSAQLTQFLAQQADAQQVLLPELGVTSWQILP---GEQDMDGFFYALL 426
Query: 135 QK 136
QK
Sbjct: 427 QK 428
>gi|307132808|ref|YP_003884824.1| ribosomal RNA small subunit methyltransferase B [Dickeya dadantii
3937]
gi|306530337|gb|ADN00268.1| Ribosomal RNA small subunit methyltransferase B [Dickeya dadantii
3937]
Length = 431
Score = 108 bits (269), Expect = 8e-22, Method: Composition-based stats.
Identities = 54/119 (45%), Positives = 73/119 (61%), Gaps = 9/119 (7%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
+K FDRIL D PC+ +GV+RR+PDI WLRR +DI +L+ IL +W LK GG L++
Sbjct: 313 DKLFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELASLQQAILEAIWPRLKSGGTLVY 372
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSI-----RLNSPG-QLLPTVNKKQDYDGFFYSLFQK 136
TCS+ EE+ +Q F + H D++ RL PG Q LP +D DGFFY+ K
Sbjct: 373 ATCSILPEENHQQVAAFLQRHPDAVLVDTGRLEHPGIQNLPAA---EDGDGFFYAKLVK 428
>gi|359442177|ref|ZP_09232051.1| ribosomal RNA small subunit methyltransferase B [Pseudoalteromonas
sp. BSi20429]
gi|392535951|ref|ZP_10283088.1| 16S rRNA methyltransferase [Pseudoalteromonas arctica A 37-1-2]
gi|358035960|dbj|GAA68300.1| ribosomal RNA small subunit methyltransferase B [Pseudoalteromonas
sp. BSi20429]
Length = 431
Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats.
Identities = 53/126 (42%), Positives = 81/126 (64%), Gaps = 14/126 (11%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ K FDRIL D+PC+ +GV+RR+PDI WLRR +DI+ LSK IL+++W +LKPGG
Sbjct: 310 WWDEKLFDRILLDVPCSATGVIRRHPDIKWLRRASDIEDLSKLQNDILDSIWPLLKPGGT 369
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKD--------SIRLNSPG-QLLPTVNKKQDYDGFFY 131
L++ TCS+ +E+++Q F N+ D + + +PG QLLP + DGF+Y
Sbjct: 370 LVYATCSVLPQENQQQVAKFLANNDDVEHIPLHENDTVTTPGLQLLPG-----ESDGFYY 424
Query: 132 SLFQKR 137
+ K+
Sbjct: 425 AKLVKK 430
>gi|119773183|ref|YP_925923.1| sun protein [Shewanella amazonensis SB2B]
gi|119765683|gb|ABL98253.1| sun protein [Shewanella amazonensis SB2B]
Length = 427
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 53/125 (42%), Positives = 76/125 (60%), Gaps = 12/125 (9%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+++ FDRIL D PC+ +GV+RR+PDI WLR+ NDI +L+K +IL+N W+ LKPGG
Sbjct: 303 WWQGGKFDRILLDAPCSATGVIRRHPDIKWLRQNNDIAELAKLQQQILDNCWQWLKPGGT 362
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPG---------QLLPTVNKKQDYDGFFY 131
LL+ TCS+ EE+ EQ F + D+ P Q+LP + D DGF+Y
Sbjct: 363 LLYATCSILPEENREQIKAFLERTPDATLETLPNQANNNDIGWQILP---GQDDMDGFYY 419
Query: 132 SLFQK 136
+ +K
Sbjct: 420 ARLKK 424
>gi|332533679|ref|ZP_08409538.1| ribosomal RNA small subunit methyltransferase B [Pseudoalteromonas
haloplanktis ANT/505]
gi|332036843|gb|EGI73304.1| ribosomal RNA small subunit methyltransferase B [Pseudoalteromonas
haloplanktis ANT/505]
Length = 431
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 52/126 (41%), Positives = 81/126 (64%), Gaps = 14/126 (11%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ K FDRIL D+PC+ +GV+RR+PDI WLRR +DI+ L+K IL+++W +LKPGG
Sbjct: 310 WWDEKLFDRILLDVPCSATGVIRRHPDIKWLRRASDIEDLAKLQSDILDSIWPLLKPGGT 369
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKD--------SIRLNSPG-QLLPTVNKKQDYDGFFY 131
L++ TCS+ +E+++Q F N+ D + + +PG QLLP + DGF+Y
Sbjct: 370 LVYATCSVLPQENQQQVAKFLANNDDVEHIPLHENDTVTTPGLQLLPG-----ESDGFYY 424
Query: 132 SLFQKR 137
+ K+
Sbjct: 425 AKLVKK 430
>gi|365140596|ref|ZP_09346606.1| ribosomal RNA small subunit methyltransferase B [Klebsiella sp.
4_1_44FAA]
gi|363653451|gb|EHL92417.1| ribosomal RNA small subunit methyltransferase B [Klebsiella sp.
4_1_44FAA]
Length = 431
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 59/135 (43%), Positives = 84/135 (62%), Gaps = 13/135 (9%)
Query: 13 KKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNN 70
K+ + RF ++ N+ FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +ILN
Sbjct: 300 KQGDGRFPEQWCGNEQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILNA 359
Query: 71 LWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLN------SPGQL-LPTVNKK 123
+W LKPGG L++ TCS+ EE+ +Q F D+ L+ SPGQ LP V
Sbjct: 360 IWGHLKPGGTLVYATCSILPEENSQQIAAFLARTPDA-ELHATGTPASPGQQNLPGV--- 415
Query: 124 QDYDGFFYSLFQKRK 138
++ DGFFY+ KR+
Sbjct: 416 EEGDGFFYAKLIKRR 430
>gi|152972197|ref|YP_001337343.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|224493256|sp|A6TEU2.1|RSMB_KLEP7 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|150957046|gb|ABR79076.1| 16S rRNA m5C967 methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
Length = 431
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 59/135 (43%), Positives = 84/135 (62%), Gaps = 13/135 (9%)
Query: 13 KKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNN 70
K+ + RF ++ N+ FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +ILN
Sbjct: 300 KQGDGRFPEQWCGNEQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILNA 359
Query: 71 LWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLN------SPGQL-LPTVNKK 123
+W LKPGG L++ TCS+ EE+ +Q F D+ L+ SPGQ LP V
Sbjct: 360 IWGHLKPGGTLVYATCSILPEENSQQIAAFLARTPDA-ELHATGTPASPGQQNLPGV--- 415
Query: 124 QDYDGFFYSLFQKRK 138
++ DGFFY+ KR+
Sbjct: 416 EEGDGFFYAKLIKRR 430
>gi|330002246|ref|ZP_08304257.1| ribosomal RNA small subunit methyltransferase B [Klebsiella sp. MS
92-3]
gi|328537385|gb|EGF63634.1| ribosomal RNA small subunit methyltransferase B [Klebsiella sp. MS
92-3]
Length = 431
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 59/135 (43%), Positives = 84/135 (62%), Gaps = 13/135 (9%)
Query: 13 KKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNN 70
K+ + RF ++ N+ FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +ILN
Sbjct: 300 KQGDGRFPEQWCGNEQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILNA 359
Query: 71 LWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLN------SPGQL-LPTVNKK 123
+W LKPGG L++ TCS+ EE+ +Q F D+ L+ SPGQ LP V
Sbjct: 360 IWGHLKPGGTLVYATCSILPEENSQQIAAFLARTPDA-ELHATGTPASPGQQNLPGV--- 415
Query: 124 QDYDGFFYSLFQKRK 138
++ DGFFY+ KR+
Sbjct: 416 EEGDGFFYAKLIKRR 430
>gi|254784303|ref|YP_003071731.1| ribosomal RNA small subunit methyltransferase B [Teredinibacter
turnerae T7901]
gi|237683392|gb|ACR10656.1| ribosomal RNA small subunit methyltransferase B [Teredinibacter
turnerae T7901]
Length = 433
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 53/123 (43%), Positives = 79/123 (64%), Gaps = 13/123 (10%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
+++ N+ FDR+L D+PC+ +GV+RR+PDI LRR++D+ KLS ILNN+W+MLKPGG
Sbjct: 308 QWWNNQPFDRVLLDVPCSATGVIRRHPDIKLLRREDDLAKLSALQQAILNNVWQMLKPGG 367
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDS----------IRLNSPGQLLPTVNKKQDYDGF 129
L++ TCS+ EE+ E F +HKD+ I + QLLP + + DGF
Sbjct: 368 LLVYATCSVLPEENSELITQFVTDHKDAELAPMDADWGIEQPAGRQLLPQL---EGPDGF 424
Query: 130 FYS 132
+Y+
Sbjct: 425 YYA 427
>gi|212709010|ref|ZP_03317138.1| hypothetical protein PROVALCAL_00042 [Providencia alcalifaciens DSM
30120]
gi|212688376|gb|EEB47904.1| hypothetical protein PROVALCAL_00042 [Providencia alcalifaciens DSM
30120]
Length = 428
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 52/118 (44%), Positives = 76/118 (64%), Gaps = 2/118 (1%)
Query: 23 KNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLL 82
K++ FDRIL D PC+ +GV+RR+PDI WLRR +DI++LS+ +IL +W LKPGG L+
Sbjct: 312 KDQLFDRILLDAPCSATGVIRRHPDIKWLRRDSDIQELSQLQAQILEAVWSYLKPGGTLV 371
Query: 83 FVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQL-LPTVNKKQDYDGFFYSLFQKRKE 139
+ TCS+ EE+ +Q F H D+ R+N +L L + DGFFY+ K+ +
Sbjct: 372 YATCSIMPEENSQQIKHFLSKHVDA-RINDGTELGLQILPSATGGDGFFYARLLKQAQ 428
>gi|422020862|ref|ZP_16367388.1| 16S rRNA methyltransferase B [Providencia alcalifaciens Dmel2]
gi|414100357|gb|EKT61976.1| 16S rRNA methyltransferase B [Providencia alcalifaciens Dmel2]
Length = 428
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 52/118 (44%), Positives = 76/118 (64%), Gaps = 2/118 (1%)
Query: 23 KNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLL 82
K++ FDRIL D PC+ +GV+RR+PDI WLRR +DI++LS+ +IL +W LKPGG L+
Sbjct: 312 KDQLFDRILLDAPCSATGVIRRHPDIKWLRRDSDIQELSQLQAQILEAVWSYLKPGGTLV 371
Query: 83 FVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQL-LPTVNKKQDYDGFFYSLFQKRKE 139
+ TCS+ EE+ +Q F H D+ R+N +L L + DGFFY+ K+ +
Sbjct: 372 YATCSIMPEENSQQIKHFLSKHVDA-RINDGTELGLQILPSATGGDGFFYARLLKQAQ 428
>gi|323493837|ref|ZP_08098955.1| 16S rRNA methyltransferase B [Vibrio brasiliensis LMG 20546]
gi|323311971|gb|EGA65117.1| 16S rRNA methyltransferase B [Vibrio brasiliensis LMG 20546]
Length = 426
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 50/121 (41%), Positives = 81/121 (66%), Gaps = 8/121 (6%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+++ + FDRIL D PC+ +GV+RR+PDI WLRR +DI L++ +IL+ +W+ LKPGG
Sbjct: 307 WWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREILDAMWQQLKPGGT 366
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDS----IRLNSPG-QLLPTVNKKQDYDGFFYSLFQ 135
L++ TCS+ +E++EQ F D+ +++PG Q+LP ++D DGF+Y++
Sbjct: 367 LVYATCSITPQENKEQVKAFLARTSDAKLQGSDVDNPGRQILP---GEEDMDGFYYAILT 423
Query: 136 K 136
K
Sbjct: 424 K 424
>gi|237806927|ref|YP_002891367.1| sun protein [Tolumonas auensis DSM 9187]
gi|237499188|gb|ACQ91781.1| sun protein [Tolumonas auensis DSM 9187]
Length = 433
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 57/142 (40%), Positives = 85/142 (59%), Gaps = 12/142 (8%)
Query: 5 EIESSDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYS 64
++E++ IN ++ ++++ FDRIL D PC+ +GV+RR+PDI WLRR DI +L+
Sbjct: 292 QLEATLINGDASHPEQWWQGPQFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAELAHLQ 351
Query: 65 CKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIR--LN------SPG-Q 115
ILN +W+ LKPGG LL+ TCS+ +E+ Q F + D+I LN PG Q
Sbjct: 352 HDILNAMWQQLKPGGTLLYATCSILSDENSSQIKSFLERTADAIHVPLNEKDTALQPGWQ 411
Query: 116 LLPTVNKKQDYDGFFYSLFQKR 137
+ P +Q DGFFY+ K+
Sbjct: 412 IHP---GEQHMDGFFYAKLTKQ 430
>gi|338999390|ref|ZP_08638037.1| Sun protein [Halomonas sp. TD01]
gi|338763719|gb|EGP18704.1| Sun protein [Halomonas sp. TD01]
Length = 444
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 55/148 (37%), Positives = 86/148 (58%), Gaps = 21/148 (14%)
Query: 2 IAGEIESSDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLS 61
+ E++ +D ++ ++ FD IL D PC+G+GV+RR+PDI LRRK DI++L+
Sbjct: 304 LTAELQHADATQQD-----WWNGTSFDAILLDAPCSGTGVIRRHPDIKKLRRKEDIRQLA 358
Query: 62 KYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPG------- 114
K ++L+NLW +L+PGG LL+ TCS+ EE+ EQ F D+ ++ +P
Sbjct: 359 KLQRQLLDNLWSLLRPGGTLLYATCSVLPEENAEQIDAFLARTPDA-KVTTPNDVAWGEP 417
Query: 115 -----QLLPTVNKKQDYDGFFYSLFQKR 137
QL P + +DGFFY+ +KR
Sbjct: 418 SGQGRQLFPA---QSSHDGFFYARLEKR 442
>gi|428941576|ref|ZP_19014617.1| 16S rRNA methyltransferase B, partial [Klebsiella pneumoniae VA360]
gi|426300285|gb|EKV62578.1| 16S rRNA methyltransferase B, partial [Klebsiella pneumoniae VA360]
Length = 262
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/134 (43%), Positives = 81/134 (60%), Gaps = 11/134 (8%)
Query: 13 KKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNN 70
K+ + RF ++ N+ FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +ILN
Sbjct: 131 KQGDGRFPEQWCGNEQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILNA 190
Query: 71 LWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS-----IRLNSPGQL-LPTVNKKQ 124
W LKPGG L++ TCS+ EE+ +Q F D+ SPGQ LP V +
Sbjct: 191 TWAHLKPGGTLVYATCSILPEENGQQIAAFLARTPDAELHATGTPASPGQQNLPGV---E 247
Query: 125 DYDGFFYSLFQKRK 138
+ DGFFY+ KR+
Sbjct: 248 EGDGFFYAKLIKRR 261
>gi|425083465|ref|ZP_18486562.1| ribosomal RNA small subunit methyltransferase B [Klebsiella
pneumoniae subsp. pneumoniae WGLW2]
gi|405598666|gb|EKB71868.1| ribosomal RNA small subunit methyltransferase B [Klebsiella
pneumoniae subsp. pneumoniae WGLW2]
Length = 431
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 59/135 (43%), Positives = 84/135 (62%), Gaps = 13/135 (9%)
Query: 13 KKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNN 70
K+ + RF ++ N+ FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +ILN
Sbjct: 300 KQGDGRFPEQWCGNEQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILNA 359
Query: 71 LWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLN------SPGQL-LPTVNKK 123
+W LKPGG L++ TCS+ EE+ +Q F D+ L+ SPGQ LP V
Sbjct: 360 IWGHLKPGGTLVYATCSILPEENSQQIAAFLARTPDA-ELHATGTPASPGQQNLPGV--- 415
Query: 124 QDYDGFFYSLFQKRK 138
++ DGFFY+ KR+
Sbjct: 416 EEGDGFFYAKLIKRR 430
>gi|260775013|ref|ZP_05883913.1| ribosomal RNA small subunit methyltransferase B [Vibrio
coralliilyticus ATCC BAA-450]
gi|260609103|gb|EEX35262.1| ribosomal RNA small subunit methyltransferase B [Vibrio
coralliilyticus ATCC BAA-450]
Length = 426
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 50/121 (41%), Positives = 80/121 (66%), Gaps = 8/121 (6%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+++ + FDRIL D PC+ +GV+RR+PDI WLRR +DI L+K +IL+ +W+ LKPGG
Sbjct: 307 WWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRGDDIAALAKLQSEILDAMWQQLKPGGT 366
Query: 81 LLFVTCSLWFEESEEQAIIF----SKNHKDSIRLNSPG-QLLPTVNKKQDYDGFFYSLFQ 135
L++ TCS+ +E+ EQ F + + +++PG Q+LP ++D DGF+Y++
Sbjct: 367 LVYATCSITPQENSEQVKAFLARTANAQLEGSPVDNPGRQVLP---GEEDMDGFYYAILT 423
Query: 136 K 136
K
Sbjct: 424 K 424
>gi|262040752|ref|ZP_06013983.1| RNA methyltransferase Sun [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259041896|gb|EEW42936.1| RNA methyltransferase Sun [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 431
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 59/135 (43%), Positives = 83/135 (61%), Gaps = 13/135 (9%)
Query: 13 KKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNN 70
K+ + RF ++ N+ FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +ILN
Sbjct: 300 KQGDGRFPEQWCGNEQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILNA 359
Query: 71 LWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLN------SPGQL-LPTVNKK 123
W LKPGG L++ TCS+ EE+ +Q F D+ L+ SPGQ LP V
Sbjct: 360 TWAHLKPGGTLVYATCSILPEENSQQIAAFLARTPDA-ELHATGTPASPGQQNLPGV--- 415
Query: 124 QDYDGFFYSLFQKRK 138
++ DGFFY+ KR+
Sbjct: 416 EEGDGFFYAKLIKRR 430
>gi|410695210|ref|YP_003625832.1| putative rsmB (sun protein) (Fmu, rRNA SAM-dependent
methyltransferase) [Thiomonas sp. 3As]
gi|294341635|emb|CAZ90052.1| putative rsmB (sun protein) (Fmu, rRNA SAM-dependent
methyltransferase) [Thiomonas sp. 3As]
Length = 459
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 58/129 (44%), Positives = 79/129 (61%), Gaps = 13/129 (10%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRIL D PC+ SG+ RR+PDI WLRR DI L+ +L+ LW +L+PGGK
Sbjct: 329 WWDGQPFDRILLDAPCSASGIARRHPDIRWLRRAADIPALAATQAALLDALWPLLRPGGK 388
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLL---PTVNKKQD----------YD 127
LL+VTCS++ +E EQA F + D+I +PGQLL P ++ D D
Sbjct: 389 LLYVTCSVFPQEGVEQARAFLARYADAIASPAPGQLLPQEPAPDQTGDEPGPGAAIHSQD 448
Query: 128 GFFYSLFQK 136
GFFY+LF K
Sbjct: 449 GFFYALFTK 457
>gi|171060673|ref|YP_001793022.1| sun protein [Leptothrix cholodnii SP-6]
gi|170778118|gb|ACB36257.1| sun protein [Leptothrix cholodnii SP-6]
Length = 453
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 51/125 (40%), Positives = 73/125 (58%), Gaps = 8/125 (6%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
R++ + FD IL D PC+ SG+VRR+PD+ WLRR +DIK L+ ++L+ LW +LKPGG
Sbjct: 327 RWWDGQPFDAILLDAPCSASGIVRRHPDVRWLRRASDIKALAATQSRLLDALWGLLKPGG 386
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDY--------DGFFY 131
+L++ TCS++ E Q F + +I SPG LL V+ DGFFY
Sbjct: 387 RLVYATCSVFRAEGSGQVAAFLQRTPGAIARPSPGHLLGVVDNPAQAGEVASVAGDGFFY 446
Query: 132 SLFQK 136
+ K
Sbjct: 447 ARLDK 451
>gi|419764950|ref|ZP_14291189.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae DSM 30104]
gi|397742078|gb|EJK89297.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae DSM 30104]
Length = 431
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 59/135 (43%), Positives = 83/135 (61%), Gaps = 13/135 (9%)
Query: 13 KKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNN 70
K+ + RF ++ N+ FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +ILN
Sbjct: 300 KQGDGRFPEQWCGNEQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILNA 359
Query: 71 LWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLN------SPGQL-LPTVNKK 123
W LKPGG L++ TCS+ EE+ +Q F D+ L+ SPGQ LP V
Sbjct: 360 TWTHLKPGGTLVYATCSILPEENSQQIAAFLARTPDA-ELHATGTPASPGQQNLPGV--- 415
Query: 124 QDYDGFFYSLFQKRK 138
++ DGFFY+ KR+
Sbjct: 416 EEGDGFFYAKLIKRR 430
>gi|238896785|ref|YP_002921530.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|402778717|ref|YP_006634263.1| ribosomal RNA small subunit methyltransferase B [Klebsiella
pneumoniae subsp. pneumoniae 1084]
gi|238549112|dbj|BAH65463.1| 16S rRNA m5C967 methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|402539671|gb|AFQ63820.1| Ribosomal RNA small subunit methyltransferase B [Klebsiella
pneumoniae subsp. pneumoniae 1084]
Length = 431
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 59/135 (43%), Positives = 83/135 (61%), Gaps = 13/135 (9%)
Query: 13 KKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNN 70
K+ + RF ++ N+ FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +ILN
Sbjct: 300 KQGDGRFPEQWCGNEQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILNA 359
Query: 71 LWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLN------SPGQL-LPTVNKK 123
W LKPGG L++ TCS+ EE+ +Q F D+ L+ SPGQ LP V
Sbjct: 360 TWTHLKPGGTLVYATCSILPEENSQQIAAFLARTPDA-ELHATGTPASPGQQNLPGV--- 415
Query: 124 QDYDGFFYSLFQKRK 138
++ DGFFY+ KR+
Sbjct: 416 EEGDGFFYAKLIKRR 430
>gi|425074591|ref|ZP_18477694.1| ribosomal RNA small subunit methyltransferase B [Klebsiella
pneumoniae subsp. pneumoniae WGLW1]
gi|425085227|ref|ZP_18488320.1| ribosomal RNA small subunit methyltransferase B [Klebsiella
pneumoniae subsp. pneumoniae WGLW3]
gi|405596056|gb|EKB69426.1| ribosomal RNA small subunit methyltransferase B [Klebsiella
pneumoniae subsp. pneumoniae WGLW1]
gi|405608642|gb|EKB81593.1| ribosomal RNA small subunit methyltransferase B [Klebsiella
pneumoniae subsp. pneumoniae WGLW3]
Length = 431
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 59/135 (43%), Positives = 83/135 (61%), Gaps = 13/135 (9%)
Query: 13 KKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNN 70
K+ + RF ++ N+ FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +ILN
Sbjct: 300 KQGDGRFPEQWCGNEQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILNA 359
Query: 71 LWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLN------SPGQL-LPTVNKK 123
W LKPGG L++ TCS+ EE+ +Q F D+ L+ SPGQ LP V
Sbjct: 360 TWTHLKPGGTLVYATCSILPEENSQQIAAFLARTPDA-ELHATGTPASPGQQNLPGV--- 415
Query: 124 QDYDGFFYSLFQKRK 138
++ DGFFY+ KR+
Sbjct: 416 EEGDGFFYAKLIKRR 430
>gi|375104244|ref|ZP_09750505.1| tRNA/rRNA cytosine-C5-methylase [Burkholderiales bacterium
JOSHI_001]
gi|374664975|gb|EHR69760.1| tRNA/rRNA cytosine-C5-methylase [Burkholderiales bacterium
JOSHI_001]
Length = 449
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 52/132 (39%), Positives = 81/132 (61%), Gaps = 15/132 (11%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
+++ + FD IL D PC+ SG+VRR+PD+ WLRR +D+ L++ ++L+ LW ++KPGG
Sbjct: 317 QWWDGQPFDAILLDAPCSASGIVRRHPDVRWLRRPDDVVALARIQAELLDALWPLVKPGG 376
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNH-KDSIRLN--SPGQLLPTVNKKQDY---------- 126
LL+VTCSL+ E ++Q F + H D+ RL+ +PG +LP +
Sbjct: 377 VLLYVTCSLFKREGQQQIDAFLQRHAADAPRLDPLAPGHVLPLPDNSGSAPAWGAAAPPV 436
Query: 127 --DGFFYSLFQK 136
DGFFY+L +K
Sbjct: 437 TGDGFFYALLRK 448
>gi|433659118|ref|YP_007276497.1| Ribosomal RNA small subunit methyltransferase B [Vibrio
parahaemolyticus BB22OP]
gi|432509806|gb|AGB11323.1| Ribosomal RNA small subunit methyltransferase B [Vibrio
parahaemolyticus BB22OP]
Length = 427
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 51/127 (40%), Positives = 80/127 (62%), Gaps = 8/127 (6%)
Query: 17 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLK 76
N +++ + FDRIL D PC+ +GV+RR+PDI WLRR +DI L++ +I + +W LK
Sbjct: 303 NPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQSEIFDAMWTQLK 362
Query: 77 PGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFY 131
PGG +++ TCS+ +E+ EQ F D+ L+S PG Q+LP ++D DGF+Y
Sbjct: 363 PGGTMVYATCSITPQENVEQVKAFLARTADAQLLDSDPDQPGRQILP---GEEDMDGFYY 419
Query: 132 SLFQKRK 138
++ K +
Sbjct: 420 AVLTKTR 426
>gi|28899818|ref|NP_799423.1| Sun protein [Vibrio parahaemolyticus RIMD 2210633]
gi|260362016|ref|ZP_05775021.1| ribosomal RNA small subunit methyltransferase B [Vibrio
parahaemolyticus K5030]
gi|260876497|ref|ZP_05888852.1| ribosomal RNA small subunit methyltransferase B [Vibrio
parahaemolyticus AN-5034]
gi|260897446|ref|ZP_05905942.1| ribosomal RNA small subunit methyltransferase B [Vibrio
parahaemolyticus Peru-466]
gi|46396865|sp|Q87KD3.1|RSMB_VIBPA RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|28808070|dbj|BAC61307.1| Sun protein [Vibrio parahaemolyticus RIMD 2210633]
gi|308087890|gb|EFO37585.1| ribosomal RNA small subunit methyltransferase B [Vibrio
parahaemolyticus Peru-466]
gi|308090396|gb|EFO40091.1| ribosomal RNA small subunit methyltransferase B [Vibrio
parahaemolyticus AN-5034]
gi|308114191|gb|EFO51731.1| ribosomal RNA small subunit methyltransferase B [Vibrio
parahaemolyticus K5030]
Length = 427
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 51/127 (40%), Positives = 80/127 (62%), Gaps = 8/127 (6%)
Query: 17 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLK 76
N +++ + FDRIL D PC+ +GV+RR+PDI WLRR +DI L++ +I + +W LK
Sbjct: 303 NPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQSEIFDAMWTQLK 362
Query: 77 PGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFY 131
PGG +++ TCS+ +E+ EQ F D+ L+S PG Q+LP ++D DGF+Y
Sbjct: 363 PGGTMVYATCSITPQENVEQVKAFLARTADAQLLDSDPDQPGRQILP---GEEDMDGFYY 419
Query: 132 SLFQKRK 138
++ K +
Sbjct: 420 AVLTKTR 426
>gi|449053761|ref|ZP_21732592.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae hvKP1]
gi|448875566|gb|EMB10579.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae hvKP1]
Length = 431
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 59/135 (43%), Positives = 83/135 (61%), Gaps = 13/135 (9%)
Query: 13 KKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNN 70
K+ + RF ++ N+ FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +ILN
Sbjct: 300 KQGDGRFPEQWCGNEQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILNA 359
Query: 71 LWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLN------SPGQL-LPTVNKK 123
W LKPGG L++ TCS+ EE+ +Q F D+ L+ SPGQ LP V
Sbjct: 360 TWTHLKPGGTLVYATCSILPEENSQQIAAFLARTPDA-ELHATGTPASPGQQNLPGV--- 415
Query: 124 QDYDGFFYSLFQKRK 138
++ DGFFY+ KR+
Sbjct: 416 EEGDGFFYAKLIKRR 430
>gi|268593572|ref|ZP_06127793.1| ribosomal RNA small subunit methyltransferase B [Providencia
rettgeri DSM 1131]
gi|291310849|gb|EFE51302.1| ribosomal RNA small subunit methyltransferase B [Providencia
rettgeri DSM 1131]
Length = 427
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 54/122 (44%), Positives = 77/122 (63%), Gaps = 8/122 (6%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
++ K++ FDRIL D PC+ +GV+RR+PDI WLRR +DI +L++ +IL +W LKPGG
Sbjct: 309 KWAKDQQFDRILLDAPCSATGVIRRHPDIKWLRRDSDINELAQLQAQILEAIWPYLKPGG 368
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPG----QLLPTVNKKQDYDGFFYSLFQ 135
LL+ TCS+ EE+ +Q F H D+ LN Q+LP+ N DGFFY+
Sbjct: 369 TLLYATCSIMPEENGKQIQNFLSKHNDA-SLNDGTDAGLQVLPSTNGG---DGFFYARLV 424
Query: 136 KR 137
K+
Sbjct: 425 KK 426
>gi|254229997|ref|ZP_04923398.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. Ex25]
gi|262392829|ref|YP_003284683.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. Ex25]
gi|151937499|gb|EDN56356.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. Ex25]
gi|262336423|gb|ACY50218.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. Ex25]
Length = 427
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 51/125 (40%), Positives = 79/125 (63%), Gaps = 8/125 (6%)
Query: 17 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLK 76
N +++ + FDRIL D PC+ +GV+RR+PDI WLRR +DI L++ +I + +W LK
Sbjct: 303 NPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQSEIFDAMWTQLK 362
Query: 77 PGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFY 131
PGG +++ TCS+ +E+ EQ F D+ L+S PG Q+LP ++D DGF+Y
Sbjct: 363 PGGTMVYATCSITPQENVEQVKAFLARTADAQLLDSDPDQPGRQILP---GEEDMDGFYY 419
Query: 132 SLFQK 136
++ K
Sbjct: 420 AVLSK 424
>gi|431930626|ref|YP_007243672.1| ribosomal RNA small subunit methyltransferase RsmB [Thioflavicoccus
mobilis 8321]
gi|431828929|gb|AGA90042.1| ribosomal RNA small subunit methyltransferase RsmB [Thioflavicoccus
mobilis 8321]
Length = 461
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 49/125 (39%), Positives = 78/125 (62%), Gaps = 13/125 (10%)
Query: 22 YKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKL 81
+ + +DRIL D+PC+ +GV+RR+PDI WLRR +D++ L+ +IL+ +W +L+PGG+L
Sbjct: 337 WATQRYDRILLDVPCSATGVIRRHPDIKWLRRASDLRPLAGQQTRILDAVWPLLEPGGRL 396
Query: 82 LFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPG----------QLLPTVNKKQDYDGFFY 131
L+ TCSL EE+E+Q F H D++ + Q LPT ++ DGF++
Sbjct: 397 LYTTCSLLPEENEDQIAAFLARHPDAMEVPIEATWGLARRRGRQTLPT---RRGPDGFYF 453
Query: 132 SLFQK 136
+L K
Sbjct: 454 ALLGK 458
>gi|424048350|ref|ZP_17785903.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HENC-03]
gi|408882589|gb|EKM21395.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HENC-03]
Length = 427
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 50/126 (39%), Positives = 81/126 (64%), Gaps = 8/126 (6%)
Query: 17 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLK 76
N ++++ + FDRIL D PC+ +GV+RR+PDI WLRR +DI L++ +I + +W LK
Sbjct: 303 NPQKWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQSEIFDAMWTQLK 362
Query: 77 PGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFY 131
PGG +++ TCS+ +E+ EQ F D+ ++S PG Q+LP ++D DGF+Y
Sbjct: 363 PGGTMVYATCSITPQENVEQVKAFLARTADAQLVDSDPEQPGRQILP---GEEDMDGFYY 419
Query: 132 SLFQKR 137
++ K+
Sbjct: 420 AVLTKK 425
>gi|421496290|ref|ZP_15943525.1| rsmB [Aeromonas media WS]
gi|407184718|gb|EKE58540.1| rsmB [Aeromonas media WS]
Length = 430
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 55/121 (45%), Positives = 76/121 (62%), Gaps = 14/121 (11%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI++L++ C+ILN LW LK GG LL+ TC
Sbjct: 314 FDRILLDAPCSATGVIRRHPDIKWLRRDQDIRELAELQCRILNALWAKLKSGGTLLYATC 373
Query: 87 SLWFEESEEQAIIFSKNHKDSIRL---------NSPG-QLLPTVNKKQDYDGFFYSLFQK 136
S+ EE+ +Q F + KD+ RL + PG Q LP + + DGF+Y+ K
Sbjct: 374 SVLPEENRDQIRAFLADTKDA-RLVPLHQQDNPDCPGRQFLP---GEAEMDGFYYAKLIK 429
Query: 137 R 137
+
Sbjct: 430 Q 430
>gi|375267072|ref|YP_005024515.1| 16S rRNA methyltransferase B [Vibrio sp. EJY3]
gi|369842392|gb|AEX23536.1| 16S rRNA methyltransferase B [Vibrio sp. EJY3]
Length = 427
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 51/125 (40%), Positives = 79/125 (63%), Gaps = 8/125 (6%)
Query: 17 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLK 76
N +++ + FDRIL D PC+ +GV+RR+PDI WLRR +DI L++ +I + +W LK
Sbjct: 303 NPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQSEIFDAMWTQLK 362
Query: 77 PGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFY 131
PGG +++ TCS+ +E+ EQ F D+ L+S PG Q+LP ++D DGF+Y
Sbjct: 363 PGGTMVYATCSITPQENVEQVKAFLARTADAKLLDSDPEHPGRQILP---GEEDMDGFYY 419
Query: 132 SLFQK 136
++ K
Sbjct: 420 AVLTK 424
>gi|451972172|ref|ZP_21925383.1| ribosomal RNA small subunit methyltransferase B [Vibrio
alginolyticus E0666]
gi|451931837|gb|EMD79520.1| ribosomal RNA small subunit methyltransferase B [Vibrio
alginolyticus E0666]
Length = 427
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 51/125 (40%), Positives = 79/125 (63%), Gaps = 8/125 (6%)
Query: 17 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLK 76
N +++ + FDRIL D PC+ +GV+RR+PDI WLRR +DI L++ +I + +W LK
Sbjct: 303 NPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQSEIFDAMWTQLK 362
Query: 77 PGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFY 131
PGG +++ TCS+ +E+ EQ F D+ L+S PG Q+LP ++D DGF+Y
Sbjct: 363 PGGTMVYATCSITPQENVEQVKAFLARTADAQLLDSDPDQPGRQILP---GEEDMDGFYY 419
Query: 132 SLFQK 136
++ K
Sbjct: 420 AVLTK 424
>gi|417321569|ref|ZP_12108105.1| 16S rRNA methyltransferase B [Vibrio parahaemolyticus 10329]
gi|328471169|gb|EGF42071.1| 16S rRNA methyltransferase B [Vibrio parahaemolyticus 10329]
Length = 427
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 51/125 (40%), Positives = 79/125 (63%), Gaps = 8/125 (6%)
Query: 17 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLK 76
N +++ + FDRIL D PC+ +GV+RR+PDI WLRR +DI L++ +I + +W LK
Sbjct: 303 NPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQSEIFDAMWTQLK 362
Query: 77 PGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFY 131
PGG +++ TCS+ +E+ EQ F D+ L+S PG Q+LP ++D DGF+Y
Sbjct: 363 PGGTMVYATCSITPQENVEQVKAFLARTADAQLLDSDPDQPGRQILP---GEEDMDGFYY 419
Query: 132 SLFQK 136
++ K
Sbjct: 420 AVLTK 424
>gi|269967001|ref|ZP_06181071.1| sun protein [Vibrio alginolyticus 40B]
gi|269828395|gb|EEZ82659.1| sun protein [Vibrio alginolyticus 40B]
Length = 427
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 51/125 (40%), Positives = 79/125 (63%), Gaps = 8/125 (6%)
Query: 17 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLK 76
N +++ + FDRIL D PC+ +GV+RR+PDI WLRR +DI L++ +I + +W LK
Sbjct: 303 NPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQSEIFDAMWTQLK 362
Query: 77 PGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFY 131
PGG +++ TCS+ +E+ EQ F D+ L+S PG Q+LP ++D DGF+Y
Sbjct: 363 PGGTMVYATCSITPQENVEQVKAFLARTADAQLLDSDPDQPGRQILP---GEEDMDGFYY 419
Query: 132 SLFQK 136
++ K
Sbjct: 420 AVLTK 424
>gi|260901337|ref|ZP_05909732.1| ribosomal RNA small subunit methyltransferase B [Vibrio
parahaemolyticus AQ4037]
gi|308109871|gb|EFO47411.1| ribosomal RNA small subunit methyltransferase B [Vibrio
parahaemolyticus AQ4037]
Length = 427
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 51/125 (40%), Positives = 79/125 (63%), Gaps = 8/125 (6%)
Query: 17 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLK 76
N +++ + FDRIL D PC+ +GV+RR+PDI WLRR +DI L++ +I + +W LK
Sbjct: 303 NPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQSEIFDAMWTQLK 362
Query: 77 PGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFY 131
PGG +++ TCS+ +E+ EQ F D+ L+S PG Q+LP ++D DGF+Y
Sbjct: 363 PGGTMVYATCSITPQENVEQVKAFLARTADAQLLDSDPDQPGRQILP---GEEDMDGFYY 419
Query: 132 SLFQK 136
++ K
Sbjct: 420 AVLTK 424
>gi|153837662|ref|ZP_01990329.1| ribosomal RNA small subunit methyltransferase B [Vibrio
parahaemolyticus AQ3810]
gi|149748952|gb|EDM59779.1| ribosomal RNA small subunit methyltransferase B [Vibrio
parahaemolyticus AQ3810]
Length = 427
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 51/125 (40%), Positives = 79/125 (63%), Gaps = 8/125 (6%)
Query: 17 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLK 76
N +++ + FDRIL D PC+ +GV+RR+PDI WLRR +DI L++ +I + +W LK
Sbjct: 303 NPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQSEIFDAMWTQLK 362
Query: 77 PGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFY 131
PGG +++ TCS+ +E+ EQ F D+ L+S PG Q+LP ++D DGF+Y
Sbjct: 363 PGGTMVYATCSITPQENVEQVKAFLARTADAQLLDSDPDQPGRQILP---GEEDMDGFYY 419
Query: 132 SLFQK 136
++ K
Sbjct: 420 AVLTK 424
>gi|91226301|ref|ZP_01261141.1| Sun protein [Vibrio alginolyticus 12G01]
gi|91189312|gb|EAS75591.1| Sun protein [Vibrio alginolyticus 12G01]
Length = 427
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 51/125 (40%), Positives = 79/125 (63%), Gaps = 8/125 (6%)
Query: 17 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLK 76
N +++ + FDRIL D PC+ +GV+RR+PDI WLRR +DI L++ +I + +W LK
Sbjct: 303 NPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQSEIFDAMWTQLK 362
Query: 77 PGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFY 131
PGG +++ TCS+ +E+ EQ F D+ L+S PG Q+LP ++D DGF+Y
Sbjct: 363 PGGTMVYATCSITPQENVEQVKAFLARTADAQLLDSDPDQPGRQILP---GEEDMDGFYY 419
Query: 132 SLFQK 136
++ K
Sbjct: 420 AVLTK 424
>gi|424039271|ref|ZP_17777672.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HENC-02]
gi|408893176|gb|EKM30460.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HENC-02]
Length = 388
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 83/137 (60%), Gaps = 8/137 (5%)
Query: 6 IESSDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSC 65
+++ + N +++ + FDRIL D PC+ +GV+RR+PDI WLRR +DI L+
Sbjct: 253 LQAKVVCGDARNPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALADLQS 312
Query: 66 KILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTV 120
+I + +W LKPGG +++ TCS+ +E+ EQ F D+ ++S PG Q+LP
Sbjct: 313 EIFDAMWTQLKPGGTMVYATCSITPQENVEQVKAFLARTADAQLVDSDPKQPGRQILPG- 371
Query: 121 NKKQDYDGFFYSLFQKR 137
++D DGF+Y++ K+
Sbjct: 372 --EEDMDGFYYAVLTKK 386
>gi|304399258|ref|ZP_07381124.1| sun protein [Pantoea sp. aB]
gi|304353184|gb|EFM17565.1| sun protein [Pantoea sp. aB]
Length = 433
Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 73/117 (62%), Gaps = 3/117 (2%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
++ FDRIL D PC+ +GV+RR+PDI WLRR DI +L+K +ILN +W LKPGG L++
Sbjct: 313 DRQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAKLQSEILNAVWPHLKPGGTLIY 372
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSIRL---NSPGQLLPTVNKKQDYDGFFYSLFQKR 137
TCS+ EE+ +Q F + D+ + ++P L + + DGFFY+ K+
Sbjct: 373 ATCSILPEENHQQIDAFLQRQHDAQAVPLRDAPANGLQVFPQAEGGDGFFYAKLIKK 429
>gi|118594095|ref|ZP_01551442.1| sun; rRNA methylase [Methylophilales bacterium HTCC2181]
gi|118439873|gb|EAV46500.1| sun; rRNA methylase [Methylophilales bacterium HTCC2181]
Length = 423
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 86/140 (61%), Gaps = 13/140 (9%)
Query: 6 IESSDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSC 65
+++ I + +N +++ + FDRIL D+PC+ SG+VRR+ DI WLRR +D K
Sbjct: 287 LQAKVIKEPLDNDNKWWDRQAFDRILLDVPCSASGIVRRHIDIKWLRRPSDFVNYGKSQL 346
Query: 66 KILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIR---------LNSPGQL 116
++LNN W +LK GKLL+VTCS++ EE+ + F +NHKD+IR ++ Q+
Sbjct: 347 ELLNNAWPLLKKNGKLLYVTCSVFQEENCDVIAAFCENHKDAIRGDIKFPEHVVSMKNQM 406
Query: 117 LPTVNKKQDYDGFFYSLFQK 136
LP+ + +DG +Y + +K
Sbjct: 407 LPS----KHHDGLYYEILEK 422
>gi|386036821|ref|YP_005956734.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae KCTC 2242]
gi|424832658|ref|ZP_18257386.1| ribosomal RNA small subunit methyltransferase B [Klebsiella
pneumoniae subsp. pneumoniae Ecl8]
gi|425093580|ref|ZP_18496664.1| ribosomal RNA small subunit methyltransferase B [Klebsiella
pneumoniae subsp. pneumoniae WGLW5]
gi|339763949|gb|AEK00170.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae KCTC 2242]
gi|405610555|gb|EKB83350.1| ribosomal RNA small subunit methyltransferase B [Klebsiella
pneumoniae subsp. pneumoniae WGLW5]
gi|414710101|emb|CCN31805.1| ribosomal RNA small subunit methyltransferase B [Klebsiella
pneumoniae subsp. pneumoniae Ecl8]
Length = 431
Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats.
Identities = 55/134 (41%), Positives = 82/134 (61%), Gaps = 11/134 (8%)
Query: 13 KKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNN 70
K+ + RF ++ N+ FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +ILN
Sbjct: 300 KQGDGRFPEQWCGNEQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILNA 359
Query: 71 LWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDY---- 126
+W LKPGG L++ TCS+ EE+ +Q F D+ L++ G P + +Q+
Sbjct: 360 IWGHLKPGGTLVYATCSILPEENSQQIAAFLARTPDA-ELHATGT--PAIPGQQNLPGAE 416
Query: 127 --DGFFYSLFQKRK 138
DGFFY+ KR+
Sbjct: 417 EGDGFFYAKLIKRR 430
>gi|350529768|ref|ZP_08908709.1| 16S rRNA methyltransferase B [Vibrio rotiferianus DAT722]
Length = 427
Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats.
Identities = 50/126 (39%), Positives = 80/126 (63%), Gaps = 8/126 (6%)
Query: 17 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLK 76
N +++ + FDRIL D PC+ +GV+RR+PDI WLRR +DI L++ +I + +W LK
Sbjct: 303 NPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQSEIFDAMWTQLK 362
Query: 77 PGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFY 131
PGG +++ TCS+ +E+ EQ F D+ ++S PG Q+LP ++D DGF+Y
Sbjct: 363 PGGTMVYATCSITPQENVEQVKAFLARTADAQLMDSDPKQPGRQILP---GEEDMDGFYY 419
Query: 132 SLFQKR 137
++ K+
Sbjct: 420 AVLTKK 425
>gi|407792149|ref|ZP_11139220.1| 16S rRNA methyltransferase B [Gallaecimonas xiamenensis 3-C-1]
gi|407198006|gb|EKE68051.1| 16S rRNA methyltransferase B [Gallaecimonas xiamenensis 3-C-1]
Length = 431
Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats.
Identities = 55/120 (45%), Positives = 71/120 (59%), Gaps = 12/120 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI++L+K IL+N W MLKPGG LL+ TC
Sbjct: 314 FDRILLDAPCSATGVIRRHPDIRWLRRDQDIRELAKLQAAILDNCWAMLKPGGTLLYATC 373
Query: 87 SLWFEESEEQAIIFSKNHKDSI--------RLNSPG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F D+ PG QLLP ++ DGFFY+ K+
Sbjct: 374 SVLPEENGAQIQAFLSRTPDATLAPVRDGESAAQPGWQLLP---GDKEMDGFFYARVLKK 430
>gi|392552737|ref|ZP_10299874.1| 16S rRNA methyltransferase [Pseudoalteromonas spongiae
UST010723-006]
Length = 427
Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 54/125 (43%), Positives = 80/125 (64%), Gaps = 14/125 (11%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRIL D+PC+ +GV+RR+PDI WLRR +DI++L++ +IL +W +LK GG
Sbjct: 307 WWDGEQFDRILLDVPCSATGVIRRHPDIKWLRRASDIEQLAQLQKQILEQIWPLLKSGGT 366
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDS--IRLN------SPG-QLLPTVNKKQDYDGFFY 131
L++ TCS+ EE+ +Q F H D+ I LN PG QLLP ++DGFFY
Sbjct: 367 LVYATCSVLPEENTDQIKRFLAQHADAKHIALNLADTIEQPGWQLLP-----DEHDGFFY 421
Query: 132 SLFQK 136
+ +K
Sbjct: 422 AKIEK 426
>gi|372272359|ref|ZP_09508407.1| Sun protein [Marinobacterium stanieri S30]
Length = 442
Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 52/127 (40%), Positives = 78/127 (61%), Gaps = 13/127 (10%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRIL D PC+G+GV+RR+PDI LRR DI L+ ILNNLW ML+ GG+
Sbjct: 313 WWDGQLFDRILIDAPCSGTGVIRRHPDIKLLRRGEDIAALASVQLSILNNLWSMLQSGGR 372
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIR--LNSP--------GQLLPTVNKKQDYDGFF 130
L++ TCS++ +E+E F K H D+I +++P QL P + +DGF+
Sbjct: 373 LVYATCSIFGQENERVIERFIKQHPDAIHQPIDAPWGEARPFGRQLFP---QPDGHDGFY 429
Query: 131 YSLFQKR 137
Y++ K+
Sbjct: 430 YAVLDKQ 436
>gi|319791338|ref|YP_004152978.1| sun protein [Variovorax paradoxus EPS]
gi|315593801|gb|ADU34867.1| sun protein [Variovorax paradoxus EPS]
Length = 456
Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 53/120 (44%), Positives = 75/120 (62%), Gaps = 9/120 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FD IL D PCT SG+VRR+PD+ WLRR++D +L+ +L LW +++PGG+LL+ TC
Sbjct: 337 FDAILLDAPCTASGIVRRHPDVRWLRRESDTAQLAGQQAALLAALWPLVRPGGRLLYCTC 396
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTV---------NKKQDYDGFFYSLFQKR 137
S++ EE +Q F ++ D+ SPG LLP N D+DGFFY+L +KR
Sbjct: 397 SVFREEGSQQIDAFLAHNTDARLQPSPGHLLPQSGGNVRGVPDNPSGDHDGFFYALLEKR 456
>gi|242237890|ref|YP_002986071.1| 16S rRNA methyltransferase B [Dickeya dadantii Ech703]
gi|242129947|gb|ACS84249.1| sun protein [Dickeya dadantii Ech703]
Length = 431
Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 50/109 (45%), Positives = 71/109 (65%), Gaps = 3/109 (2%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR +DI +L+ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDSDIVELANLQREILDAIWPRLKIGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNK---KQDYDGFFYS 132
S+ EE+++Q I F + H D++ + P V K QD DGFFY+
Sbjct: 376 SILPEENQQQIISFLQRHADAVLRETGSPEKPGVQKLPSPQDGDGFFYA 424
>gi|392540117|ref|ZP_10287254.1| 16S rRNA methyltransferase [Pseudoalteromonas marina mano4]
Length = 431
Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats.
Identities = 52/126 (41%), Positives = 80/126 (63%), Gaps = 14/126 (11%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ ++ FDRIL D+PC+ +GV+RR+PDI WLRR +DI+ L+ ILN++W +LKPGG
Sbjct: 310 WWDDEQFDRILLDVPCSATGVIRRHPDIKWLRRASDIEDLAALQGDILNSIWPLLKPGGT 369
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHK--------DSIRLNSPG-QLLPTVNKKQDYDGFFY 131
L++ TCS+ +E+++Q F N+ D L +PG QLLP + DGF+Y
Sbjct: 370 LVYATCSVLPKENQQQVAKFLANNDDVEHIPLHDKDTLTTPGLQLLPG-----ESDGFYY 424
Query: 132 SLFQKR 137
+ K+
Sbjct: 425 AKMVKK 430
>gi|354595948|ref|ZP_09013965.1| Ribosomal RNA small subunit methyltransferase B [Brenneria sp.
EniD312]
gi|353673883|gb|EHD19916.1| Ribosomal RNA small subunit methyltransferase B [Brenneria sp.
EniD312]
Length = 429
Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats.
Identities = 50/117 (42%), Positives = 72/117 (61%), Gaps = 3/117 (2%)
Query: 23 KNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLL 82
+ + FDRIL D PC+ +GVVRR+PDI WLRR +DI +L+ +IL +W LKPGG L+
Sbjct: 312 QGRTFDRILLDAPCSATGVVRRHPDIKWLRRDSDIAELALLQKEILEAVWPYLKPGGTLV 371
Query: 83 FVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNK---KQDYDGFFYSLFQK 136
+ TCS+ EE+++Q F + H D+ + + P + K D DGFFY+ K
Sbjct: 372 YATCSIMPEENQQQVAGFLERHADATLVGTGSPQRPGIQKLPSPDDGDGFFYAKLVK 428
>gi|378980997|ref|YP_005229138.1| RNA methyltransferase Sun [Klebsiella pneumoniae subsp. pneumoniae
HS11286]
gi|419976857|ref|ZP_14492244.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|419982567|ref|ZP_14497822.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|419988191|ref|ZP_14503292.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|419993958|ref|ZP_14508886.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|419999776|ref|ZP_14514542.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|420005619|ref|ZP_14520235.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|420011346|ref|ZP_14525800.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|420017347|ref|ZP_14531622.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|420022826|ref|ZP_14536983.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|420028606|ref|ZP_14542577.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|420034490|ref|ZP_14548274.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|420040098|ref|ZP_14553715.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|420045877|ref|ZP_14559334.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|420051694|ref|ZP_14564972.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|420057360|ref|ZP_14570499.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|420062800|ref|ZP_14575761.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|420068812|ref|ZP_14581581.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|420074858|ref|ZP_14587443.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|420080298|ref|ZP_14592725.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|420085445|ref|ZP_14597669.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|421911832|ref|ZP_16341577.1| Ribosomal RNA small subunit methyltransferase B [Klebsiella
pneumoniae subsp. pneumoniae ST258-K26BO]
gi|421914247|ref|ZP_16343896.1| Ribosomal RNA small subunit methyltransferase B [Klebsiella
pneumoniae subsp. pneumoniae ST258-K28BO]
gi|428149696|ref|ZP_18997510.1| Ribosomal RNA small subunit methyltransferase B [Klebsiella
pneumoniae subsp. pneumoniae ST512-K30BO]
gi|364520408|gb|AEW63536.1| RNA methyltransferase Sun [Klebsiella pneumoniae subsp. pneumoniae
HS11286]
gi|397339578|gb|EJJ32818.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|397340043|gb|EJJ33260.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|397341671|gb|EJJ34846.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|397357339|gb|EJJ50101.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|397357359|gb|EJJ50120.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|397360910|gb|EJJ53580.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|397373704|gb|EJJ66100.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|397376064|gb|EJJ68334.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|397382796|gb|EJJ74951.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|397391379|gb|EJJ83234.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|397392511|gb|EJJ84303.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|397400475|gb|EJJ92117.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|397408716|gb|EJK00067.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|397408823|gb|EJK00168.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|397419611|gb|EJK10751.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|397425860|gb|EJK16721.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|397427176|gb|EJK17961.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|397432468|gb|EJK23127.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|397441933|gb|EJK32298.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|397449161|gb|EJK39307.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|410114034|emb|CCM84202.1| Ribosomal RNA small subunit methyltransferase B [Klebsiella
pneumoniae subsp. pneumoniae ST258-K26BO]
gi|410123395|emb|CCM86521.1| Ribosomal RNA small subunit methyltransferase B [Klebsiella
pneumoniae subsp. pneumoniae ST258-K28BO]
gi|427540456|emb|CCM93648.1| Ribosomal RNA small subunit methyltransferase B [Klebsiella
pneumoniae subsp. pneumoniae ST512-K30BO]
Length = 431
Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats.
Identities = 59/135 (43%), Positives = 83/135 (61%), Gaps = 13/135 (9%)
Query: 13 KKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNN 70
K+ + RF ++ N+ FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +ILN
Sbjct: 300 KQGDGRFPEQWCGNEQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILNA 359
Query: 71 LWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLN------SPGQL-LPTVNKK 123
W LKPGG L++ TCS+ EE+ +Q F D+ L+ SPGQ LP V
Sbjct: 360 TWAHLKPGGTLVYATCSILPEENGQQIAAFLARTPDA-ELHATGTPASPGQQNLPGV--- 415
Query: 124 QDYDGFFYSLFQKRK 138
++ DGFFY+ KR+
Sbjct: 416 EEGDGFFYAKLIKRR 430
>gi|206577662|ref|YP_002236309.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae 342]
gi|224493255|sp|B5XNC2.1|RSMB_KLEP3 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|206566720|gb|ACI08496.1| ribosomal RNA small subunit methyltransferase B [Klebsiella
pneumoniae 342]
Length = 431
Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats.
Identities = 56/134 (41%), Positives = 83/134 (61%), Gaps = 11/134 (8%)
Query: 13 KKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNN 70
K+ + RF ++ N+ FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +ILN+
Sbjct: 300 KQGDGRFPEQWCGNEQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILNS 359
Query: 71 LWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLN------SPGQLLPTVNKKQ 124
W+ LKPGG L++ TCS+ EE+ +Q F D+ L+ SPGQ + +
Sbjct: 360 TWEHLKPGGTLVYATCSILPEENSQQISAFLARTPDA-ELHATGTPASPGQ--QNLPGPE 416
Query: 125 DYDGFFYSLFQKRK 138
+ DGFFY+ KR+
Sbjct: 417 EGDGFFYAKLIKRR 430
>gi|424931495|ref|ZP_18349867.1| Ribosomal RNA small subunit methyltransferase B [Klebsiella
pneumoniae subsp. pneumoniae KpQ3]
gi|407805682|gb|EKF76933.1| Ribosomal RNA small subunit methyltransferase B [Klebsiella
pneumoniae subsp. pneumoniae KpQ3]
Length = 431
Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats.
Identities = 59/135 (43%), Positives = 83/135 (61%), Gaps = 13/135 (9%)
Query: 13 KKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNN 70
K+ + RF ++ N+ FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +ILN
Sbjct: 300 KQGDGRFPEQWCGNEQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILNA 359
Query: 71 LWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLN------SPGQL-LPTVNKK 123
W LKPGG L++ TCS+ EE+ +Q F D+ L+ SPGQ LP V
Sbjct: 360 TWTHLKPGGTLVYATCSILPEENGQQIAAFLARTPDA-ELHATGTPASPGQQNLPGV--- 415
Query: 124 QDYDGFFYSLFQKRK 138
++ DGFFY+ KR+
Sbjct: 416 EEGDGFFYAKLIKRR 430
>gi|336314013|ref|ZP_08568935.1| ribosomal RNA small subunit methyltransferase RsmB [Rheinheimera
sp. A13L]
gi|335881952|gb|EGM79829.1| ribosomal RNA small subunit methyltransferase RsmB [Rheinheimera
sp. A13L]
Length = 432
Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats.
Identities = 51/123 (41%), Positives = 74/123 (60%), Gaps = 18/123 (14%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D+PC+ +GV+RR+PDI WLR+K DI L + +IL N+W +LKP +LL+ TC
Sbjct: 316 FDRILLDVPCSATGVIRRHPDIRWLRKKTDIAPLVELQQQILRNIWPLLKPDAELLYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNK-----------KQDYDGFFYSLFQ 135
S+ EE+++Q F +H D+ QL+P + +Q DGFFY+ +
Sbjct: 376 SVLPEENQQQIEAFLADHADA-------QLIPLADSHPQLHWQILPGQQQMDGFFYAKLR 428
Query: 136 KRK 138
K K
Sbjct: 429 KTK 431
>gi|239813610|ref|YP_002942520.1| sun protein [Variovorax paradoxus S110]
gi|239800187|gb|ACS17254.1| sun protein [Variovorax paradoxus S110]
Length = 442
Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats.
Identities = 53/120 (44%), Positives = 75/120 (62%), Gaps = 9/120 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FD IL D PCT SG+VRR+PD+ WLRR++D +L+ +L LW +++PGG+LL+ TC
Sbjct: 321 FDAILLDAPCTASGIVRRHPDVRWLRRESDTAQLAVQQAALLAALWPLVRPGGRLLYCTC 380
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTV---------NKKQDYDGFFYSLFQKR 137
S++ EE +Q F ++ D+ SPG LLP N D+DGFFY+L +KR
Sbjct: 381 SVFREEGSQQIDAFLAHNTDARLGASPGHLLPQSGANARAVPDNPSGDHDGFFYALLEKR 440
>gi|359455367|ref|ZP_09244599.1| ribosomal RNA small subunit methyltransferase B [Pseudoalteromonas
sp. BSi20495]
gi|358047597|dbj|GAA80848.1| ribosomal RNA small subunit methyltransferase B [Pseudoalteromonas
sp. BSi20495]
Length = 431
Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats.
Identities = 52/126 (41%), Positives = 78/126 (61%), Gaps = 14/126 (11%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ K FDRIL D+PC+ +GV+RR+PDI WLRR +DI L+ ILN++W +LKPGG
Sbjct: 310 WWDEKLFDRILLDVPCSATGVIRRHPDIKWLRRASDIVDLAALQGDILNSIWPLLKPGGT 369
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRL--------NSPG-QLLPTVNKKQDYDGFFY 131
L++ TCS+ +E+++Q F N+ D+ + PG QLLP + DGF+Y
Sbjct: 370 LVYATCSVLPQENQQQVAKFLANNDDAEHIPLHDKDTVTMPGLQLLPG-----ESDGFYY 424
Query: 132 SLFQKR 137
+ K+
Sbjct: 425 AKLVKK 430
>gi|315125135|ref|YP_004067138.1| 16S rRNA methyltransferase [Pseudoalteromonas sp. SM9913]
gi|315013648|gb|ADT66986.1| 16S rRNA methyltransferase [Pseudoalteromonas sp. SM9913]
Length = 431
Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats.
Identities = 54/126 (42%), Positives = 82/126 (65%), Gaps = 14/126 (11%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRIL D+PC+ +GV+RR+PDI WLRR +DI LS IL+++W +LKPGG
Sbjct: 310 WWDEEQFDRILLDVPCSATGVIRRHPDIKWLRRASDINDLSTLQGDILDSIWPLLKPGGT 369
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDS--IRLNS------PG-QLLPTVNKKQDYDGFFY 131
L++ TCS+ +E+++Q F N++D+ I L+S PG QLLP + DGF+Y
Sbjct: 370 LVYATCSVLPQENQQQVAKFLANNEDAEHIPLHSEDTKTTPGLQLLPG-----ESDGFYY 424
Query: 132 SLFQKR 137
+ K+
Sbjct: 425 AKLVKK 430
>gi|414071413|ref|ZP_11407382.1| ribosomal RNA small subunit methyltransferase B [Pseudoalteromonas
sp. Bsw20308]
gi|410806133|gb|EKS12130.1| ribosomal RNA small subunit methyltransferase B [Pseudoalteromonas
sp. Bsw20308]
Length = 431
Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats.
Identities = 52/126 (41%), Positives = 78/126 (61%), Gaps = 14/126 (11%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ K FDRIL D+PC+ +GV+RR+PDI WLRR +DI L+ ILN++W +LKPGG
Sbjct: 310 WWDEKLFDRILLDVPCSATGVIRRHPDIKWLRRASDIVDLAALQGDILNSIWPLLKPGGT 369
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRL--------NSPG-QLLPTVNKKQDYDGFFY 131
L++ TCS+ +E+++Q F N+ D+ + PG QLLP + DGF+Y
Sbjct: 370 LVYATCSVLPQENQQQVAKFLANNDDAEHIPLHDKDTVTMPGLQLLPG-----ESDGFYY 424
Query: 132 SLFQKR 137
+ K+
Sbjct: 425 AKLVKK 430
>gi|119471679|ref|ZP_01614064.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Alteromonadales
bacterium TW-7]
gi|119445458|gb|EAW26745.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Alteromonadales
bacterium TW-7]
Length = 431
Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats.
Identities = 52/126 (41%), Positives = 80/126 (63%), Gaps = 14/126 (11%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ ++ FDRIL D+PC+ +GV+RR+PDI WLRR +DI+ L+ ILN++W +LKPGG
Sbjct: 310 WWDDEQFDRILLDVPCSATGVIRRHPDIKWLRRASDIEDLAALQGDILNSIWPLLKPGGT 369
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHK--------DSIRLNSPG-QLLPTVNKKQDYDGFFY 131
L++ TCS+ +E+++Q F N+ D L +PG QLLP + DGF+Y
Sbjct: 370 LVYATCSVLPKENQQQIAKFLANNDDVEHIPLHDKDTLTTPGLQLLPG-----ESDGFYY 424
Query: 132 SLFQKR 137
+ K+
Sbjct: 425 AKMVKK 430
>gi|374333834|ref|YP_005090521.1| 16S rRNA methyltransferase B [Oceanimonas sp. GK1]
gi|372983521|gb|AEX99770.1| 16S rRNA methyltransferase B [Oceanimonas sp. GK1]
Length = 431
Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats.
Identities = 52/126 (41%), Positives = 77/126 (61%), Gaps = 12/126 (9%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+++ FDRIL D PC+ +GV+RR+PDI WLRR DI +L+ +IL+ LW+ LKPGG
Sbjct: 308 WWQGPQFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAQLAALQSQILDALWQQLKPGGM 367
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRL--------NSPG-QLLPTVNKKQDYDGFFY 131
LL+ TCS+ +E+ EQ F D++ + PG QLLP +++ DGF+Y
Sbjct: 368 LLYATCSILPDENREQIKAFLARTPDAVHRPLHAGDTPDQPGWQLLPGEDER---DGFYY 424
Query: 132 SLFQKR 137
+ K+
Sbjct: 425 ASIAKQ 430
>gi|297180807|gb|ADI17013.1| tRNA and rRNA cytosine-c5-methylases [uncultured Vibrionales
bacterium HF0010_22E23]
Length = 426
Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats.
Identities = 54/142 (38%), Positives = 84/142 (59%), Gaps = 17/142 (11%)
Query: 1 MIAGEIESSDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL 60
+I G+ S D ++ + FDRIL D PC+ +GV+RR+PDI WLRR +DI++L
Sbjct: 296 VICGDARSPD---------EWWNGEDFDRILLDAPCSATGVIRRHPDIKWLRRADDIEQL 346
Query: 61 SKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSI----RLNSPG-Q 115
+I + +W+ LK GG L++ TCS+ +E+ EQ F H D+ ++PG Q
Sbjct: 347 VTLQAEIFDAMWQKLKRGGTLVYATCSVTPQENAEQVKAFLARHDDANLQTGDADNPGRQ 406
Query: 116 LLPTVNKKQDYDGFFYSLFQKR 137
+LP + D DGF+Y++ QK+
Sbjct: 407 ILP---GQDDMDGFYYAVLQKQ 425
>gi|424034609|ref|ZP_17774012.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HENC-01]
gi|408872270|gb|EKM11491.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HENC-01]
Length = 427
Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats.
Identities = 50/126 (39%), Positives = 79/126 (62%), Gaps = 8/126 (6%)
Query: 17 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLK 76
N +++ + FDRIL D PC+ +GV+RR+PDI WLRR +DI L+ +I + +W LK
Sbjct: 303 NPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALADLQSEIFDAMWTQLK 362
Query: 77 PGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFY 131
PGG +++ TCS+ +E+ EQ F D+ ++S PG Q+LP ++D DGF+Y
Sbjct: 363 PGGTMVYATCSITPQENVEQVKAFLARTADAQLVDSNPKQPGRQILP---GEEDMDGFYY 419
Query: 132 SLFQKR 137
++ K+
Sbjct: 420 AVLTKK 425
>gi|290512100|ref|ZP_06551468.1| ribosomal RNA small subunit methyltransferase B [Klebsiella sp.
1_1_55]
gi|289775890|gb|EFD83890.1| ribosomal RNA small subunit methyltransferase B [Klebsiella sp.
1_1_55]
Length = 431
Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats.
Identities = 56/134 (41%), Positives = 82/134 (61%), Gaps = 11/134 (8%)
Query: 13 KKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNN 70
K+ + RF ++ N+ FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +ILN
Sbjct: 300 KQGDGRFPEQWCGNEQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILNA 359
Query: 71 LWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLN------SPGQLLPTVNKKQ 124
W+ LKPGG L++ TCS+ EE+ +Q F D+ L+ SPGQ + +
Sbjct: 360 TWEHLKPGGTLVYATCSILPEENSQQISAFLARTPDA-ELHATGTPASPGQ--QNLPGPE 416
Query: 125 DYDGFFYSLFQKRK 138
+ DGFFY+ KR+
Sbjct: 417 EGDGFFYAKLIKRR 430
>gi|71278391|ref|YP_266800.1| sun protein [Colwellia psychrerythraea 34H]
gi|71144131|gb|AAZ24604.1| sun protein [Colwellia psychrerythraea 34H]
Length = 440
Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats.
Identities = 55/130 (42%), Positives = 80/130 (61%), Gaps = 15/130 (11%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRIL D PC+G+GV+RR+PDI WLR+ +DI KL +IL+N+W +LKPGG
Sbjct: 314 WWSGEQFDRILLDAPCSGTGVIRRHPDIKWLRKADDIDKLVVLQQQILDNIWSLLKPGGT 373
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKD----SIRLNSPG--------QLLPTVNKKQDYDG 128
LL+ TCS+ EE+ Q F + ++D +I N+P QLLP ++ DG
Sbjct: 374 LLYATCSVLPEENSLQISRFIEQNQDAQLIAINGNTPETDKNAIGWQLLPDA---ENMDG 430
Query: 129 FFYSLFQKRK 138
F+Y+ K K
Sbjct: 431 FYYAKLLKLK 440
>gi|283835706|ref|ZP_06355447.1| hypothetical protein CIT292_10098 [Citrobacter youngae ATCC 29220]
gi|291068385|gb|EFE06494.1| ribosomal RNA small subunit methyltransferase B [Citrobacter
youngae ATCC 29220]
Length = 429
Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats.
Identities = 53/117 (45%), Positives = 72/117 (61%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ SGV+RR+PDI WLRR DI +L++ +ILN W LKPGG L++ TC
Sbjct: 316 FDRILLDAPCSASGVIRRHPDIKWLRRDRDIAELAQLQAEILNATWTHLKPGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+++Q F D++ + PG Q LP +D DGFFY+ K+
Sbjct: 376 SILPEENQQQIAAFLARTPDAVLSETGTPEQPGRQNLPDA---EDGDGFFYAKLIKK 429
>gi|288933298|ref|YP_003437357.1| sun protein [Klebsiella variicola At-22]
gi|288888027|gb|ADC56345.1| sun protein [Klebsiella variicola At-22]
Length = 431
Score = 105 bits (261), Expect = 9e-21, Method: Composition-based stats.
Identities = 56/134 (41%), Positives = 82/134 (61%), Gaps = 11/134 (8%)
Query: 13 KKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNN 70
K+ + RF ++ N+ FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +ILN
Sbjct: 300 KQGDGRFPEQWCGNEQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILNA 359
Query: 71 LWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLN------SPGQLLPTVNKKQ 124
W+ LKPGG L++ TCS+ EE+ +Q F D+ L+ SPGQ + +
Sbjct: 360 TWEHLKPGGTLVYATCSILPEENSQQISAFLARTPDA-ELHATGTPASPGQ--QNLPGPE 416
Query: 125 DYDGFFYSLFQKRK 138
+ DGFFY+ KR+
Sbjct: 417 EGDGFFYAKLIKRR 430
>gi|399908755|ref|ZP_10777307.1| Sun protein [Halomonas sp. KM-1]
Length = 449
Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats.
Identities = 52/123 (42%), Positives = 77/123 (62%), Gaps = 16/123 (13%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FD IL D PC+G+GV+RR+PDI LRR +DI KL++ ++L+NLW +L+PGG LL+ TC
Sbjct: 330 FDAILLDAPCSGTGVIRRHPDIKRLRRASDIAKLAELQTRLLDNLWPLLRPGGSLLYATC 389
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPG------------QLLPTVNKKQDYDGFFYSLF 134
S+ EE++EQ F + D + + +P QLLP + +DGFFY+
Sbjct: 390 SVLREENDEQIRAFLERTPD-VTVTTPAEVSWGRAVGAGRQLLP---EPDSHDGFFYARL 445
Query: 135 QKR 137
+K+
Sbjct: 446 RKQ 448
>gi|251788002|ref|YP_003002723.1| 16S rRNA methyltransferase B [Dickeya zeae Ech1591]
gi|247536623|gb|ACT05244.1| sun protein [Dickeya zeae Ech1591]
Length = 431
Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats.
Identities = 53/119 (44%), Positives = 74/119 (62%), Gaps = 9/119 (7%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
++ FDRIL D PC+ +GV+RR+PDI WLRR +DI +L+ IL +W LK GG L++
Sbjct: 313 DQCFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELASLQQAILEAIWPRLKNGGTLVY 372
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSI-----RLNSPG-QLLPTVNKKQDYDGFFYSLFQK 136
TCS+ EE+ +Q F ++H D+I SPG Q+LP +D DGFFY+ K
Sbjct: 373 ATCSVLPEENSQQIAAFLQHHPDAILADTGNTTSPGIQVLPM---PEDGDGFFYAKLVK 428
>gi|260774556|ref|ZP_05883469.1| ribosomal RNA small subunit methyltransferase B [Vibrio
metschnikovii CIP 69.14]
gi|260610462|gb|EEX35668.1| ribosomal RNA small subunit methyltransferase B [Vibrio
metschnikovii CIP 69.14]
Length = 426
Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats.
Identities = 50/122 (40%), Positives = 81/122 (66%), Gaps = 8/122 (6%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+++ + FDRIL D PC+ +GV+RR+PDI WLRR +DI+ L++ +IL+ +WK LK GG
Sbjct: 307 WWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRASDIEALAELQSEILDAMWKQLKIGGT 366
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFYSLFQ 135
L++ TCS+ +E+ +Q F + ++S PG Q+LP +QD DGF+Y++ +
Sbjct: 367 LVYATCSITPQENSQQIKAFLARTPKAQLIDSDPEQPGRQILP---GEQDMDGFYYAVLR 423
Query: 136 KR 137
K+
Sbjct: 424 KQ 425
>gi|333891509|ref|YP_004465384.1| 16S rRNA methyltransferase B [Alteromonas sp. SN2]
gi|332991527|gb|AEF01582.1| 16S rRNA methyltransferase B [Alteromonas sp. SN2]
Length = 444
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 50/125 (40%), Positives = 78/125 (62%), Gaps = 12/125 (9%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ ++FDRIL D PC+ +GV+RR+PDI WLR+ +DI L+ +IL +LW+ LKPGG
Sbjct: 319 WWDGQHFDRILLDAPCSATGVIRRHPDIRWLRKSSDIDALAALQAEILTSLWQTLKPGGT 378
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDS-----IRLNSPG----QLLPTVNKKQDYDGFFY 131
LL+ TCS+ +E+ +Q F + + D+ I+ +P Q+LP +Q DGF+Y
Sbjct: 379 LLYATCSILPQENSQQISAFLERNADATLVPVIKTETPSKPGRQILP---GEQQMDGFYY 435
Query: 132 SLFQK 136
+ K
Sbjct: 436 ARLVK 440
>gi|343507208|ref|ZP_08744650.1| ribosomal RNA small subunit methyltransferase B [Vibrio
ichthyoenteri ATCC 700023]
gi|342800228|gb|EGU35768.1| ribosomal RNA small subunit methyltransferase B [Vibrio
ichthyoenteri ATCC 700023]
Length = 426
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 49/122 (40%), Positives = 80/122 (65%), Gaps = 8/122 (6%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+++ + FDRIL D PC+ +GV+RR+PDI WLRR NDI+ L+ +IL+ +W+ LK GG
Sbjct: 307 WWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRANDIEALAALQSEILDAMWQQLKVGGT 366
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDS----IRLNSPG-QLLPTVNKKQDYDGFFYSLFQ 135
L++ TCS+ +E+++Q F ++ + +PG Q+LP ++D DGF+Y++
Sbjct: 367 LVYATCSITPQENKDQVKAFLARTANAELQGSDIENPGRQILP---GEEDMDGFYYAVMT 423
Query: 136 KR 137
KR
Sbjct: 424 KR 425
>gi|343515774|ref|ZP_08752824.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. N418]
gi|342797730|gb|EGU33371.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. N418]
Length = 426
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 49/122 (40%), Positives = 80/122 (65%), Gaps = 8/122 (6%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+++ + FDRIL D PC+ +GV+RR+PDI WLRR NDI+ L+ +IL+ +W+ LK GG
Sbjct: 307 WWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRANDIEALAALQSEILDAMWQQLKVGGT 366
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDS----IRLNSPG-QLLPTVNKKQDYDGFFYSLFQ 135
L++ TCS+ +E+++Q F ++ + +PG Q+LP ++D DGF+Y++
Sbjct: 367 LVYATCSITPQENKDQVKAFLARTANAELQGSDIENPGRQILP---GEEDMDGFYYAVMT 423
Query: 136 KR 137
KR
Sbjct: 424 KR 425
>gi|344198260|ref|YP_004782586.1| sun protein [Acidithiobacillus ferrivorans SS3]
gi|343773704|gb|AEM46260.1| sun protein [Acidithiobacillus ferrivorans SS3]
Length = 432
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 50/118 (42%), Positives = 73/118 (61%), Gaps = 5/118 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ +++D IL D PCTG+GV+RR+PDI R+ +D+ ++L LW L+PGG+
Sbjct: 316 WWNGEFYDAILLDAPCTGTGVIRRHPDIRLRRQMDDVTAAVAQQVRLLEGLWPCLRPGGR 375
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSP--GQLLPTVNKKQDYDGFFYSLFQK 136
LL+ TCS+ EE+EEQ I F H D+ R P GQ LP + DGF+Y+L +K
Sbjct: 376 LLYATCSVLPEENEEQIIAFLLRHADAHRSAHPLTGQRLP---GQDAMDGFYYALLEK 430
>gi|255020224|ref|ZP_05292293.1| Ribosomal RNA small subunit methyltransferase B [Acidithiobacillus
caldus ATCC 51756]
gi|340780760|ref|YP_004747367.1| ribosomal RNA small subunit methyltransferase B [Acidithiobacillus
caldus SM-1]
gi|254970366|gb|EET27859.1| Ribosomal RNA small subunit methyltransferase B [Acidithiobacillus
caldus ATCC 51756]
gi|340554913|gb|AEK56667.1| Ribosomal RNA small subunit methyltransferase B [Acidithiobacillus
caldus SM-1]
Length = 443
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 52/112 (46%), Positives = 73/112 (65%), Gaps = 5/112 (4%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FD IL D PCT SGV+RR+PDI RR++D++++ ++L LW++LKPGG+LL+ TC
Sbjct: 311 FDAILLDAPCTASGVIRRHPDILLRRREDDVERVRHEQRRLLAALWRVLKPGGRLLYCTC 370
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSP--GQLLPTVNKKQDYDGFFYSLFQK 136
S+ EE+ EQ F + H D+ L P GQ LP ++ DGFFY+L K
Sbjct: 371 SVLPEENGEQIASFLEEHDDARALPHPQCGQRLP---GEEGMDGFFYALLGK 419
>gi|308188325|ref|YP_003932456.1| ribosomal RNA small subunit methyltransferase B [Pantoea vagans
C9-1]
gi|308058835|gb|ADO11007.1| Ribosomal RNA small subunit methyltransferase B [Pantoea vagans
C9-1]
Length = 433
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 50/118 (42%), Positives = 73/118 (61%), Gaps = 5/118 (4%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
++ FDRIL D PC+ +GV+RR+PDI WLRR DI +L+K +IL+ +W LKPGG L++
Sbjct: 313 DRQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAKLQSEILDAIWPHLKPGGTLIY 372
Query: 84 VTCSLWFEESEEQAIIFSKNHKD----SIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
TCS+ EE+ +Q F + D S+R +P L + + DGFFY+ K+
Sbjct: 373 ATCSILPEENHQQIEAFLQRQHDAQAESLR-GAPANGLQVFPQAEGGDGFFYAKLIKK 429
>gi|440285901|ref|YP_007338666.1| 16S rRNA m(5)C-967 methyltransferase [Enterobacteriaceae bacterium
strain FGI 57]
gi|440045423|gb|AGB76481.1| 16S rRNA m(5)C-967 methyltransferase [Enterobacteriaceae bacterium
strain FGI 57]
Length = 429
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 56/133 (42%), Positives = 80/133 (60%), Gaps = 11/133 (8%)
Query: 13 KKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNN 70
K+ + RF ++ + FDRIL D PC+ +GVVRR+PDI WLRR DI +L++ +ILN
Sbjct: 300 KQGDGRFPEQWCGEQQFDRILLDAPCSATGVVRRHPDIKWLRRDRDIPELAQLQAEILNA 359
Query: 71 LWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQ 124
W LKPGG L++ TCS+ EE+ EQ F + D++ + PG Q LP +
Sbjct: 360 TWAHLKPGGTLVYATCSILPEENSEQIAAFLQRTPDAVLSETGTPEQPGKQNLPGA---E 416
Query: 125 DYDGFFYSLFQKR 137
+ DGFFY+ K+
Sbjct: 417 EGDGFFYAKLIKK 429
>gi|392557230|ref|ZP_10304367.1| 16S rRNA methyltransferase [Pseudoalteromonas undina NCIMB 2128]
Length = 431
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 54/126 (42%), Positives = 80/126 (63%), Gaps = 14/126 (11%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRIL D+PC+ +GV+RR+PDI WLRR +DI LS IL+++W +LKPGG
Sbjct: 310 WWDEEQFDRILLDVPCSATGVIRRHPDIKWLRRASDINDLSTLQGDILDSIWPLLKPGGT 369
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKD--SIRLNS------PG-QLLPTVNKKQDYDGFFY 131
L++ TCS+ +E+++Q F N+ D I L+S PG QLLP + DGF+Y
Sbjct: 370 LVYATCSVLPQENQQQVAKFLANNDDVEHIPLHSEDTKTTPGLQLLPG-----ESDGFYY 424
Query: 132 SLFQKR 137
+ K+
Sbjct: 425 AKLVKK 430
>gi|271502215|ref|YP_003335241.1| sun protein [Dickeya dadantii Ech586]
gi|270345770|gb|ACZ78535.1| sun protein [Dickeya dadantii Ech586]
Length = 431
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 53/119 (44%), Positives = 75/119 (63%), Gaps = 9/119 (7%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
+K FDRIL D PC+ +GV+RR+PDI WLRR +DI +L+ IL +W LK GG L++
Sbjct: 313 DKCFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELASLQNTILEAIWPRLKNGGTLVY 372
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSIRLN-----SPG-QLLPTVNKKQDYDGFFYSLFQK 136
TCS+ EE+ +Q F + H D++ ++ SPG Q+LP +D DGFFY+ K
Sbjct: 373 ATCSVLPEENCQQIADFLQRHADAMLVDTGTPASPGIQMLPAA---EDGDGFFYAKLVK 428
>gi|359450337|ref|ZP_09239791.1| ribosomal RNA small subunit methyltransferase B [Pseudoalteromonas
sp. BSi20480]
gi|358043886|dbj|GAA76040.1| ribosomal RNA small subunit methyltransferase B [Pseudoalteromonas
sp. BSi20480]
Length = 431
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 52/126 (41%), Positives = 79/126 (62%), Gaps = 14/126 (11%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ ++ FDRIL D+PC+ +GV+RR+PDI WLRR +DI+ L+ ILN++W +LKPGG
Sbjct: 310 WWDDEQFDRILLDVPCSATGVIRRHPDIKWLRRASDIEDLAALQGDILNSIWPLLKPGGT 369
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHK--------DSIRLNSPG-QLLPTVNKKQDYDGFFY 131
L++ TCS+ +E+++Q F N+ D L PG QLLP + DGF+Y
Sbjct: 370 LVYATCSVLPKENQQQVAKFLANNDDVEHIPLHDKDTLTIPGLQLLPG-----ESDGFYY 424
Query: 132 SLFQKR 137
+ K+
Sbjct: 425 AKMVKK 430
>gi|448748146|ref|ZP_21729791.1| rRNA small subunit methyltransferase B [Halomonas titanicae BH1]
gi|445564267|gb|ELY20391.1| rRNA small subunit methyltransferase B [Halomonas titanicae BH1]
Length = 444
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 54/122 (44%), Positives = 73/122 (59%), Gaps = 14/122 (11%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FD IL D PC+G+GV+RR+PDI LRRK+DI+ L+K ++L+NLW ML+ GG LL+ TC
Sbjct: 324 FDAILLDAPCSGTGVIRRHPDIKKLRRKDDIRPLAKLQRQLLDNLWPMLREGGTLLYATC 383
Query: 87 SLWFEESEEQAIIFSKNHKDS-----------IRLNSPGQLLPTVNKKQDYDGFFYSLFQ 135
S+ EE+ EQ F D+ I + QL P N +DGFFY+ +
Sbjct: 384 SVLPEENSEQIEAFLARTPDAHVTTPNDVAWGISSGAGRQLFPAQNS---HDGFFYARLE 440
Query: 136 KR 137
KR
Sbjct: 441 KR 442
>gi|419796005|ref|ZP_14321579.1| ribosomal RNA small subunit methyltransferase B [Neisseria sicca
VK64]
gi|385699958|gb|EIG30221.1| ribosomal RNA small subunit methyltransferase B [Neisseria sicca
VK64]
Length = 419
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 53/117 (45%), Positives = 73/117 (62%), Gaps = 5/117 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y K FD ILAD+PCT SGV RRNPD+ WLRR D K ++ +L+ LW+ L G+
Sbjct: 308 WYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDAAKTARQQEALLDALWQTLTKNGR 367
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
+L TCS++ EE++ Q F H D+ + S LLP NK Q DGF+Y+L +K+
Sbjct: 368 MLLATCSVFVEENDVQLQKFLNRHADAELIESR-VLLP--NKHQ--DGFYYALIKKQ 419
>gi|349610700|ref|ZP_08890033.1| ribosomal RNA small subunit methyltransferase B [Neisseria sp.
GT4A_CT1]
gi|348609576|gb|EGY59312.1| ribosomal RNA small subunit methyltransferase B [Neisseria sp.
GT4A_CT1]
Length = 419
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 53/117 (45%), Positives = 73/117 (62%), Gaps = 5/117 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y K FD ILAD+PCT SGV RRNPD+ WLRR D K ++ +L+ LW+ L G+
Sbjct: 308 WYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDAAKTARQQEALLDALWQTLTKNGR 367
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
+L TCS++ EE++ Q F H D+ + S LLP NK Q DGF+Y+L +K+
Sbjct: 368 MLLATCSVFVEENDVQLQKFLNRHADAELIESR-VLLP--NKHQ--DGFYYALIKKQ 419
>gi|340363535|ref|ZP_08685865.1| ribosomal RNA small subunit methyltransferase B [Neisseria macacae
ATCC 33926]
gi|339885680|gb|EGQ75387.1| ribosomal RNA small subunit methyltransferase B [Neisseria macacae
ATCC 33926]
Length = 419
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 53/117 (45%), Positives = 73/117 (62%), Gaps = 5/117 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y K FD ILAD+PCT SGV RRNPD+ WLRR D K ++ +L+ LW+ L G+
Sbjct: 308 WYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDAAKTARQQEALLDALWQTLTKNGR 367
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
+L TCS++ EE++ Q F H D+ + S LLP NK Q DGF+Y+L +K+
Sbjct: 368 MLLATCSVFVEENDVQLQKFLNRHADAELIESR-VLLP--NKHQ--DGFYYALIKKQ 419
>gi|255067827|ref|ZP_05319682.1| ribosomal RNA small subunit methyltransferase B [Neisseria sicca
ATCC 29256]
gi|255047918|gb|EET43382.1| ribosomal RNA small subunit methyltransferase B [Neisseria sicca
ATCC 29256]
Length = 419
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 53/117 (45%), Positives = 73/117 (62%), Gaps = 5/117 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y K FD ILAD+PCT SGV RRNPD+ WLRR D K ++ +L+ LW+ L G+
Sbjct: 308 WYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDAAKTARQQEALLDALWQTLTKNGR 367
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
+L TCS++ EE++ Q F H D+ + S LLP NK Q DGF+Y+L +K+
Sbjct: 368 MLLATCSVFVEENDVQLQKFLNRHADAELIESR-VLLP--NKHQ--DGFYYALIKKQ 419
>gi|261364702|ref|ZP_05977585.1| ribosomal RNA small subunit methyltransferase B [Neisseria mucosa
ATCC 25996]
gi|288566995|gb|EFC88555.1| ribosomal RNA small subunit methyltransferase B [Neisseria mucosa
ATCC 25996]
Length = 419
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 53/117 (45%), Positives = 73/117 (62%), Gaps = 5/117 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y K FD ILAD+PCT SGV RRNPD+ WLRR D K ++ +L+ LW+ L G+
Sbjct: 308 WYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDAAKTARQQEALLDALWQTLTKNGR 367
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
+L TCS++ EE++ Q F H D+ + S LLP NK Q DGF+Y+L +K+
Sbjct: 368 MLLATCSVFVEENDVQLQKFLNRHADAELIESR-VLLP--NKHQ--DGFYYALIKKQ 419
>gi|156972728|ref|YP_001443635.1| cytosine-C5-methylase [Vibrio harveyi ATCC BAA-1116]
gi|156524322|gb|ABU69408.1| hypothetical protein VIBHAR_00393 [Vibrio harveyi ATCC BAA-1116]
Length = 427
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 48/122 (39%), Positives = 79/122 (64%), Gaps = 8/122 (6%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+++ + FDRIL D PC+ +GV+RR+PDI WLRR +DI L++ +I + +W LKPGG
Sbjct: 307 WWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQSEIFDAMWTQLKPGGT 366
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFYSLFQ 135
+++ TCS+ +E+ EQ F ++ ++S PG Q+LP ++D DGF+Y++
Sbjct: 367 MVYATCSITPQENVEQVKAFLARTANTQLVDSDPKQPGRQILP---GEEDMDGFYYAVLT 423
Query: 136 KR 137
K+
Sbjct: 424 KK 425
>gi|359393984|ref|ZP_09187037.1| Ribosomal RNA small subunit methyltransferase B [Halomonas
boliviensis LC1]
gi|357971231|gb|EHJ93676.1| Ribosomal RNA small subunit methyltransferase B [Halomonas
boliviensis LC1]
Length = 445
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 54/123 (43%), Positives = 74/123 (60%), Gaps = 16/123 (13%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FD IL D PC+G+GV+RR+PDI LRRK+DI+ L+K ++L+NLW ML+ GG LL+ TC
Sbjct: 325 FDAILLDAPCSGTGVIRRHPDIKKLRRKDDIRPLAKLQRQLLDNLWPMLREGGTLLYATC 384
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPG------------QLLPTVNKKQDYDGFFYSLF 134
S+ EE+ EQ F D+ + +P QL P N +DGFFY+
Sbjct: 385 SVLPEENSEQIEAFLARTPDA-HVTTPNDVAWGIASGAGRQLFPAQNS---HDGFFYARL 440
Query: 135 QKR 137
+KR
Sbjct: 441 EKR 443
>gi|77359003|ref|YP_338578.1| 16S rRNA methyltransferase [Pseudoalteromonas haloplanktis TAC125]
gi|76873914|emb|CAI85135.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Pseudoalteromonas
haloplanktis TAC125]
Length = 431
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 51/126 (40%), Positives = 78/126 (61%), Gaps = 14/126 (11%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ K FDRIL D+PC+ +GV+RR+PDI WLRR +DI L+ IL+++W +LKPGG
Sbjct: 310 WWDEKQFDRILLDVPCSATGVIRRHPDIKWLRRASDIADLAALQGDILDSIWPLLKPGGT 369
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRL--------NSPG-QLLPTVNKKQDYDGFFY 131
L++ TCS+ +E+++Q F N+ D + +PG QLLP + DGF+Y
Sbjct: 370 LVYATCSVLPQENQQQVAKFLANNNDVEHIPLHDKDTPTTPGLQLLPG-----ESDGFYY 424
Query: 132 SLFQKR 137
+ K+
Sbjct: 425 AKLVKK 430
>gi|388599829|ref|ZP_10158225.1| 16S rRNA methyltransferase B [Vibrio campbellii DS40M4]
gi|444428412|ref|ZP_21223745.1| 16S rRNA methyltransferase B [Vibrio campbellii CAIM 519 = NBRC
15631]
gi|444238361|gb|ELU49971.1| 16S rRNA methyltransferase B [Vibrio campbellii CAIM 519 = NBRC
15631]
Length = 427
Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 48/122 (39%), Positives = 79/122 (64%), Gaps = 8/122 (6%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+++ + FDRIL D PC+ +GV+RR+PDI WLRR +DI L++ +I + +W LKPGG
Sbjct: 307 WWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQSEIFDAMWTQLKPGGT 366
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFYSLFQ 135
+++ TCS+ +E+ EQ F ++ ++S PG Q+LP ++D DGF+Y++
Sbjct: 367 MVYATCSITPQENVEQVKAFLARTANAQLVDSDPKQPGRQILP---GEEDMDGFYYAVLT 423
Query: 136 KR 137
K+
Sbjct: 424 KK 425
>gi|149910330|ref|ZP_01898973.1| Putative Sun protein [Moritella sp. PE36]
gi|149806578|gb|EDM66546.1| Putative Sun protein [Moritella sp. PE36]
Length = 431
Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 53/126 (42%), Positives = 74/126 (58%), Gaps = 12/126 (9%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+++ FDRIL D PC+ +GV+RR+PDI WLRR +DI L + +IL+ +W LKPGG
Sbjct: 308 WWQGDKFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAPLVQLQAEILDAMWLQLKPGGT 367
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDS--IRLNSPG-------QLLPTVNKKQDYDGFFY 131
LL+ TCS+ E+ EQ F D+ + LN+ Q+LP Q DGFFY
Sbjct: 368 LLYATCSILPAENSEQISSFVARTPDAVLVPLNADSNDQAFSWQILPNT---QGMDGFFY 424
Query: 132 SLFQKR 137
+ QK+
Sbjct: 425 AKLQKK 430
>gi|359446417|ref|ZP_09236094.1| ribosomal RNA small subunit methyltransferase B [Pseudoalteromonas
sp. BSi20439]
gi|358039756|dbj|GAA72343.1| ribosomal RNA small subunit methyltransferase B [Pseudoalteromonas
sp. BSi20439]
Length = 431
Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 54/126 (42%), Positives = 80/126 (63%), Gaps = 14/126 (11%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRIL D+PC+ +GV+RR+PDI WLRR +DI LS IL+++W +LKPGG
Sbjct: 310 WWDEEQFDRILLDVPCSATGVIRRHPDIKWLRRASDINDLSTLQGDILDSIWPLLKPGGT 369
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKD--SIRLNS------PG-QLLPTVNKKQDYDGFFY 131
L++ TCS+ +E+++Q F N+ D I L+S PG QLLP + DGF+Y
Sbjct: 370 LVYATCSVLPQENQQQVAKFLANNDDVEHIPLHSEDTKTTPGLQLLPG-----ESDGFYY 424
Query: 132 SLFQKR 137
+ K+
Sbjct: 425 AKLVKK 430
>gi|89092289|ref|ZP_01165243.1| Fmu, rRNA SAM-dependent methyltransferase [Neptuniibacter
caesariensis]
gi|89083377|gb|EAR62595.1| Fmu, rRNA SAM-dependent methyltransferase [Oceanospirillum sp.
MED92]
Length = 432
Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 53/126 (42%), Positives = 76/126 (60%), Gaps = 13/126 (10%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ +DRIL D PC+ +GV+RRNPDI +LR+ DI +L++ IL N W MLKPGGK
Sbjct: 308 WWDGDLYDRILLDAPCSATGVIRRNPDIKFLRKGEDIHELAQIQSDILANCWAMLKPGGK 367
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPG----------QLLPTVNKKQDYDGFF 130
LL+ TCS++ +E+E Q F N+ D+ L QL P +K +DGF+
Sbjct: 368 LLYATCSIFPQENERQIKRFISNNSDAKHLAIDASWGIEREFGRQLFP---EKGGHDGFY 424
Query: 131 YSLFQK 136
Y+L +K
Sbjct: 425 YALLEK 430
>gi|343511700|ref|ZP_08748855.1| ribosomal RNA small subunit methyltransferase B [Vibrio scophthalmi
LMG 19158]
gi|342797435|gb|EGU33085.1| ribosomal RNA small subunit methyltransferase B [Vibrio scophthalmi
LMG 19158]
Length = 426
Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 49/122 (40%), Positives = 79/122 (64%), Gaps = 8/122 (6%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+++ + FDRIL D PC+ +GV+RR+PDI WLRR NDI+ L+ +IL+ +W+ LK GG
Sbjct: 307 WWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRANDIEALAALQSEILDAMWQQLKVGGT 366
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDS----IRLNSPG-QLLPTVNKKQDYDGFFYSLFQ 135
L++ TCS+ +E++ Q F ++ + +PG Q+LP ++D DGF+Y++
Sbjct: 367 LVYATCSITPQENKNQVKAFLARTANAELQGSDIENPGRQILP---GEEDMDGFYYAVMT 423
Query: 136 KR 137
KR
Sbjct: 424 KR 425
>gi|422921290|ref|ZP_16954538.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
BJG-01]
gi|341649364|gb|EGS73342.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
BJG-01]
Length = 426
Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 50/123 (40%), Positives = 80/123 (65%), Gaps = 8/123 (6%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
++++ + FDRIL D PC+ +GV+RR+PDI WLRR +DI L++ +IL+ +WK LKPGG
Sbjct: 306 QWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREILDAMWKQLKPGG 365
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFYSLF 134
L++ TCS+ +E+ Q F + D+ + S PG Q+LP ++ DGF+Y++
Sbjct: 366 SLVYATCSITPQENRLQVKAFLERTPDARLVGSDPAQPGRQILP---GEEAMDGFYYAVL 422
Query: 135 QKR 137
K+
Sbjct: 423 SKQ 425
>gi|269962646|ref|ZP_06176991.1| sun protein [Vibrio harveyi 1DA3]
gi|269832569|gb|EEZ86683.1| sun protein [Vibrio harveyi 1DA3]
Length = 427
Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 49/126 (38%), Positives = 80/126 (63%), Gaps = 8/126 (6%)
Query: 17 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLK 76
N +++ + FDRIL D PC+ +GV+RR+PDI WLRR +DI L++ +I + +W LK
Sbjct: 303 NPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQSEIFDAMWTQLK 362
Query: 77 PGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFY 131
PGG +++ TCS+ +E+ EQ F ++ ++S PG Q+LP ++D DGF+Y
Sbjct: 363 PGGTMVYATCSITPQENVEQVKAFLARTANAQLVDSDPEQPGRQILP---GEEDMDGFYY 419
Query: 132 SLFQKR 137
++ K+
Sbjct: 420 AVLTKK 425
>gi|359438233|ref|ZP_09228269.1| ribosomal RNA small subunit methyltransferase B [Pseudoalteromonas
sp. BSi20311]
gi|358027072|dbj|GAA64518.1| ribosomal RNA small subunit methyltransferase B [Pseudoalteromonas
sp. BSi20311]
Length = 431
Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 54/126 (42%), Positives = 80/126 (63%), Gaps = 14/126 (11%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRIL D+PC+ +GV+RR+PDI WLRR +DI LS IL+++W +LKPGG
Sbjct: 310 WWDEEQFDRILLDVPCSATGVIRRHPDIKWLRRASDINDLSTLQGDILDSIWPLLKPGGT 369
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKD--SIRLNS------PG-QLLPTVNKKQDYDGFFY 131
L++ TCS+ +E+++Q F N+ D I L+S PG QLLP + DGF+Y
Sbjct: 370 LVYATCSVLPQENQQQVAKFLANNDDVEHIPLHSEDTKATPGLQLLPG-----ESDGFYY 424
Query: 132 SLFQKR 137
+ K+
Sbjct: 425 AKLVKK 430
>gi|398808868|ref|ZP_10567725.1| ribosomal RNA small subunit methyltransferase RsmB [Variovorax sp.
CF313]
gi|398086684|gb|EJL77295.1| ribosomal RNA small subunit methyltransferase RsmB [Variovorax sp.
CF313]
Length = 444
Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 53/120 (44%), Positives = 75/120 (62%), Gaps = 9/120 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FD IL D PCT SG+VRR+PD+ WLRR++D +L+ +L LW +++ GG+LL+ TC
Sbjct: 323 FDAILLDAPCTASGIVRRHPDVRWLRRESDTAQLAAQQAALLAALWPLVRRGGRLLYCTC 382
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTV---------NKKQDYDGFFYSLFQKR 137
S++ EE +Q F ++ D+ L SPG LLP N D+DGFFY+L +KR
Sbjct: 383 SVFREEGSQQIDAFLVHNTDARLLPSPGHLLPQSGSNARGVPDNPSGDHDGFFYALLEKR 442
>gi|262191295|ref|ZP_06049489.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae CT
5369-93]
gi|262032833|gb|EEY51377.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae CT
5369-93]
Length = 426
Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 50/123 (40%), Positives = 80/123 (65%), Gaps = 8/123 (6%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
++++ + FDRIL D PC+ +GV+RR+PDI WLRR +DI L++ +IL+ +W+ LKPGG
Sbjct: 306 QWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREILDAMWQQLKPGG 365
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFYSLF 134
LL+ TCS+ +E+ Q F + D+ + S PG Q+LP ++ DGF+Y++
Sbjct: 366 SLLYATCSITPQENRLQVKAFLERTPDARLVGSDPAQPGRQILP---GEEAMDGFYYAVL 422
Query: 135 QKR 137
K+
Sbjct: 423 SKQ 425
>gi|153834294|ref|ZP_01986961.1| ribosomal RNA small subunit methyltransferase B [Vibrio harveyi
HY01]
gi|148869302|gb|EDL68316.1| ribosomal RNA small subunit methyltransferase B [Vibrio harveyi
HY01]
Length = 427
Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 48/122 (39%), Positives = 79/122 (64%), Gaps = 8/122 (6%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+++ + FDRIL D PC+ +GV+RR+PDI WLRR +DI L++ +I + +W LKPGG
Sbjct: 307 WWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQSEIFDAMWTQLKPGGT 366
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFYSLFQ 135
+++ TCS+ +E+ EQ F ++ ++S PG Q+LP ++D DGF+Y++
Sbjct: 367 MVYATCSITPQENVEQVKAFLARTANAQLVDSDPKQPGRQILP---GEEDMDGFYYAVLT 423
Query: 136 KR 137
K+
Sbjct: 424 KK 425
>gi|359435207|ref|ZP_09225430.1| ribosomal RNA small subunit methyltransferase B [Pseudoalteromonas
sp. BSi20652]
gi|357918108|dbj|GAA61679.1| ribosomal RNA small subunit methyltransferase B [Pseudoalteromonas
sp. BSi20652]
Length = 431
Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 51/126 (40%), Positives = 78/126 (61%), Gaps = 14/126 (11%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ K FDRIL D+PC+ +GV+RR+PDI WLRR +DI L+ IL+++W +LKPGG
Sbjct: 310 WWDEKLFDRILLDVPCSATGVIRRHPDIKWLRRASDIVDLATLQNDILDSIWPLLKPGGT 369
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHK--------DSIRLNSPG-QLLPTVNKKQDYDGFFY 131
L++ TCS+ +E+++Q F N+ D + +PG QLLP + DGF+Y
Sbjct: 370 LVYATCSVLPQENQQQVAKFLANNDDVEHIPLHDKDTITTPGLQLLPG-----ESDGFYY 424
Query: 132 SLFQKR 137
+ K+
Sbjct: 425 AKLVKK 430
>gi|56459128|ref|YP_154409.1| tRNA and rRNA cytosine-C5-methylase [Idiomarina loihiensis L2TR]
gi|56178138|gb|AAV80860.1| tRNA and rRNA cytosine-C5-methylase [Idiomarina loihiensis L2TR]
Length = 442
Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 48/118 (40%), Positives = 77/118 (65%), Gaps = 2/118 (1%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +ILN+LW +LK GG+
Sbjct: 323 WWDGEQFDRILLDAPCSATGVIRRHPDIKWLRRAEDINELAQLQSQILNSLWPLLKNGGE 382
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDS--IRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
LL+ TCS+ +E++ Q F K + I ++ + L + +++ DGFFY+ +K
Sbjct: 383 LLYATCSILSKENQTQIESFLKQQSSASLIPIDEKQKTLQLLPGERNGDGFFYARLKK 440
>gi|365972378|ref|YP_004953939.1| ribosomal RNA small subunit methyltransferase B [Enterobacter
cloacae EcWSU1]
gi|365751291|gb|AEW75518.1| Ribosomal RNA small subunit methyltransferase B [Enterobacter
cloacae EcWSU1]
Length = 438
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 51/112 (45%), Positives = 72/112 (64%), Gaps = 9/112 (8%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DIK+L++ IL+ +W LKPGG L++ TC
Sbjct: 325 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIKELTQLQSDILDAIWPHLKPGGTLVYATC 384
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 132
S+ EE+ +Q F K D++ ++ PG Q LP ++ DGFFY+
Sbjct: 385 SVLPEENSQQIAAFLKRTPDAVLHDTGTPERPGLQNLPAA---EEGDGFFYA 433
>gi|226938995|ref|YP_002794066.1| sun protein [Laribacter hongkongensis HLHK9]
gi|226713919|gb|ACO73057.1| sun protein [Laribacter hongkongensis HLHK9]
Length = 412
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 74/117 (63%), Gaps = 5/117 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRILAD+PC+ SGVVRR+PDI W RR +D+ + ++ +I + LW ++ GGK
Sbjct: 301 WWDGRPFDRILADVPCSASGVVRRHPDIKWTRRSSDLNQFAQTQRRIADALWPLVASGGK 360
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
+L+ TCS++ E+ EQ F H D+ L QL+P +DGF+Y++ +R
Sbjct: 361 MLYATCSIFPTENREQIDAFLARHADAA-LERDLQLVP----DDTHDGFYYAVLVRR 412
>gi|261380548|ref|ZP_05985121.1| ribosomal RNA small subunit methyltransferase B [Neisseria subflava
NJ9703]
gi|284796516|gb|EFC51863.1| ribosomal RNA small subunit methyltransferase B [Neisseria subflava
NJ9703]
Length = 419
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 52/117 (44%), Positives = 73/117 (62%), Gaps = 5/117 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y K FD +LAD+PCT SGV RRNPD+ WLRR D K ++ +L+ LW+ L G+
Sbjct: 308 WYDGKTFDAVLADVPCTASGVARRNPDVKWLRRPTDAVKTARQQEALLDALWQTLTKNGR 367
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
+L TCS++ EE++ Q F H D+ + S LLP NK Q DGF+Y+L +K+
Sbjct: 368 MLLATCSVFVEENDGQLQKFLNRHADAELIES-HVLLP--NKHQ--DGFYYALIKKQ 419
>gi|319639525|ref|ZP_07994272.1| SUN protein [Neisseria mucosa C102]
gi|317399096|gb|EFV79770.1| SUN protein [Neisseria mucosa C102]
Length = 417
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 73/117 (62%), Gaps = 5/117 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y K FD +LAD+PCT SGV RRNPD+ WLRR D K ++ +L+ LW+ L G+
Sbjct: 306 WYDGKAFDAVLADVPCTASGVARRNPDVKWLRRPTDAVKTARQQEALLDALWQTLTKNGR 365
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
+L TCS++ EE++ Q F H D+ + S LLP NK Q DGF+Y+L +K+
Sbjct: 366 MLLATCSVFVEENDGQLQKFLNRHADAELIES-HVLLP--NKHQ--DGFYYALIKKQ 417
>gi|225075469|ref|ZP_03718668.1| hypothetical protein NEIFLAOT_00474 [Neisseria flavescens
NRL30031/H210]
gi|224953188|gb|EEG34397.1| hypothetical protein NEIFLAOT_00474 [Neisseria flavescens
NRL30031/H210]
Length = 419
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 52/117 (44%), Positives = 73/117 (62%), Gaps = 5/117 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y K FD +LAD+PCT SGV RRNPD+ WLRR D K ++ +L+ LW+ L G+
Sbjct: 308 WYDGKAFDAVLADVPCTASGVARRNPDVKWLRRPTDAVKTARQQEALLDALWQTLTKNGR 367
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
+L TCS++ EE++ Q F H D+ + S LLP NK Q DGF+Y+L +K+
Sbjct: 368 MLLATCSVFVEENDGQLQKFLNRHADAELIES-HVLLP--NKHQ--DGFYYALIKKQ 419
>gi|381401490|ref|ZP_09926390.1| 16S rRNA methyltransferase B [Kingella kingae PYKK081]
gi|380833517|gb|EIC13385.1| 16S rRNA methyltransferase B [Kingella kingae PYKK081]
Length = 418
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 52/111 (46%), Positives = 72/111 (64%), Gaps = 5/111 (4%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FD ILAD+PCT SG ++RNPDI WLRR ND K ++ +L+ LWK LK GG++L TC
Sbjct: 313 FDAILADVPCTASGTIKRNPDIKWLRRPNDALKTAQQQEIMLDELWKTLKQGGRMLLATC 372
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
S++ E++ Q F + H D+ L L+P N+KQ DGF+Y+L K+
Sbjct: 373 SIFEAENQLQCQKFLRRHADATLLEEK-VLIP--NEKQ--DGFYYALIHKK 418
>gi|352106585|ref|ZP_08961528.1| Sun protein [Halomonas sp. HAL1]
gi|350597628|gb|EHA13756.1| Sun protein [Halomonas sp. HAL1]
Length = 445
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 53/123 (43%), Positives = 74/123 (60%), Gaps = 16/123 (13%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FD IL D PC+G+GV+RR+PDI LRRK+DI+ L+K ++L+NLW ML+ GG LL+ TC
Sbjct: 325 FDAILLDAPCSGTGVIRRHPDIKKLRRKDDIRPLAKLQRQLLDNLWSMLREGGTLLYATC 384
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPG------------QLLPTVNKKQDYDGFFYSLF 134
S+ EE+ EQ F D+ + +P QL P + +DGFFY+
Sbjct: 385 SVLPEENSEQIEAFLARTPDA-HVTTPNDVAWGIPSGAGRQLFPA---QSSHDGFFYARL 440
Query: 135 QKR 137
+KR
Sbjct: 441 EKR 443
>gi|423744005|ref|ZP_17710938.1| ribosomal RNA small subunit methyltransferase B, partial [Vibrio
cholerae HC-50A2]
gi|408645484|gb|EKL17133.1| ribosomal RNA small subunit methyltransferase B, partial [Vibrio
cholerae HC-50A2]
Length = 293
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 80/123 (65%), Gaps = 8/123 (6%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
++++ + FDRIL D PC+ +GV+RR+PDI WLRR +DI L++ +IL+ +W+ LKPGG
Sbjct: 173 QWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREILDAMWQQLKPGG 232
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFYSLF 134
L++ TCS+ +E+ Q F + D+ + S PG Q+LP ++ DGF+Y++
Sbjct: 233 SLVYATCSITPQENRLQVKAFLERTPDARLVGSEPAQPGRQILP---GEEAMDGFYYAVL 289
Query: 135 QKR 137
K+
Sbjct: 290 SKQ 292
>gi|262273082|ref|ZP_06050899.1| ribosomal RNA small subunit methyltransferase B [Grimontia hollisae
CIP 101886]
gi|262222838|gb|EEY74146.1| ribosomal RNA small subunit methyltransferase B [Grimontia hollisae
CIP 101886]
Length = 426
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 49/121 (40%), Positives = 76/121 (62%), Gaps = 8/121 (6%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+++ + FDRIL D PC+ +GV+RR+PDI WLRR +DI +L +IL+ +W LK GG
Sbjct: 307 WWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIDQLVSLQSEILDAMWAQLKSGGT 366
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSI----RLNSPG-QLLPTVNKKQDYDGFFYSLFQ 135
L++ TCS+ +E+ EQ F D++ PG Q+LP ++D DGF+Y++ +
Sbjct: 367 LVYATCSVTPQENAEQVKAFLTRTPDAVLETGTPTQPGRQILP---GQEDMDGFYYAVLK 423
Query: 136 K 136
K
Sbjct: 424 K 424
>gi|392547674|ref|ZP_10294811.1| 16S rRNA methyltransferase [Pseudoalteromonas rubra ATCC 29570]
Length = 427
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 50/126 (39%), Positives = 77/126 (61%), Gaps = 14/126 (11%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+++ + FDRIL D+PC+ +GV+RR+PDI WLRR DI +L+ +IL+ +W +LKPGG
Sbjct: 307 WWQGEQFDRILLDVPCSATGVIRRHPDIKWLRRATDIDELATLQARILDAIWPLLKPGGT 366
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRL--------NSPG-QLLPTVNKKQDYDGFFY 131
L++ TCS+ +E+ EQ F D+ ++PG QLLP DGF+Y
Sbjct: 367 LVYATCSVLPQENAEQVAAFLSRTADAQLTPLHERDTPDAPGLQLLPG-----HTDGFYY 421
Query: 132 SLFQKR 137
+ +K+
Sbjct: 422 ARLEKQ 427
>gi|34499717|ref|NP_903932.1| sun protein [Chromobacterium violaceum ATCC 12472]
gi|34105568|gb|AAQ61922.1| probable sun-like protein [Chromobacterium violaceum ATCC 12472]
Length = 416
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 72/116 (62%), Gaps = 5/116 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRILAD+PC+ SGVVRR+PDI WLRR D L + + + LW +L GK
Sbjct: 305 WWGGRPFDRILADVPCSASGVVRRHPDIKWLRRPGDFAALGEQQAGMADALWPLLASRGK 364
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
+L+ TCS++ EE+ Q F K H D+ L QLLP + +DGF+Y+L +K
Sbjct: 365 MLYATCSIFPEENRLQLEGFLKRHPDASCLKEE-QLLPC----ERHDGFYYALLEK 415
>gi|421847960|ref|ZP_16281086.1| 16S rRNA methyltransferase B [Citrobacter freundii ATCC 8090 = MTCC
1658]
gi|411770645|gb|EKS54407.1| 16S rRNA methyltransferase B [Citrobacter freundii ATCC 8090 = MTCC
1658]
Length = 429
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 52/117 (44%), Positives = 72/117 (61%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +ILN W LKPGG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILNATWLHLKPGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+++Q F D++ + PG Q LP +D DGFFY+ K+
Sbjct: 376 SILPEENQQQITAFLARTPDAVLSETGTPEKPGRQNLPGA---EDGDGFFYAKLIKK 429
>gi|440232807|ref|YP_007346600.1| 16S rRNA m(5)C-967 methyltransferase [Serratia marcescens FGI94]
gi|440054512|gb|AGB84415.1| 16S rRNA m(5)C-967 methyltransferase [Serratia marcescens FGI94]
Length = 423
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 47/109 (43%), Positives = 70/109 (64%), Gaps = 3/109 (2%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
+K FDRIL D PC+ +GV+RR+PDI WLRR +DI +L+ +IL+ +W LK GG +++
Sbjct: 313 DKQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELANLQAEILDAIWPHLKSGGVMVY 372
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYS 132
TCS+ +E+ +Q F + H D+ + Q LP +D DGFFY+
Sbjct: 373 ATCSILPQENSQQLQAFLQRHNDASLVGVERQNLP---HPEDGDGFFYA 418
>gi|241760436|ref|ZP_04758530.1| ribosomal RNA small subunit methyltransferase B [Neisseria
flavescens SK114]
gi|241319105|gb|EER55598.1| ribosomal RNA small subunit methyltransferase B [Neisseria
flavescens SK114]
Length = 417
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 73/117 (62%), Gaps = 5/117 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y K FD +LAD+PCT SGV RRNPD+ WLRR D K ++ +L+ LW+ L G+
Sbjct: 306 WYDGKAFDAVLADVPCTASGVARRNPDVKWLRRPTDAVKTARQQEALLDALWQTLTKNGR 365
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
+L TCS++ EE++ Q F H D+ + S LLP NK Q DGF+Y+L +K+
Sbjct: 366 MLLATCSVFVEENDGQLQKFLNRHADAELIESR-VLLP--NKHQ--DGFYYALIKKQ 417
>gi|455644208|gb|EMF23313.1| 16S rRNA methyltransferase B [Citrobacter freundii GTC 09479]
Length = 429
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 52/117 (44%), Positives = 72/117 (61%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +ILN W LKPGG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILNATWLHLKPGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+++Q F D++ + PG Q LP +D DGFFY+ K+
Sbjct: 376 SILPEENQQQITAFLARTPDAVLSETGTPEKPGRQNLPGA---EDGDGFFYAKLIKK 429
>gi|395231847|ref|ZP_10410124.1| 16S rRNA methyltransferase [Citrobacter sp. A1]
gi|424734278|ref|ZP_18162820.1| methionyl-trna formyltransferase [Citrobacter sp. L17]
gi|394714310|gb|EJF20289.1| 16S rRNA methyltransferase [Citrobacter sp. A1]
gi|422892092|gb|EKU31969.1| methionyl-trna formyltransferase [Citrobacter sp. L17]
Length = 429
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 52/117 (44%), Positives = 72/117 (61%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +ILN W LKPGG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILNATWLHLKPGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+++Q F D++ + PG Q LP +D DGFFY+ K+
Sbjct: 376 SILPEENQQQITAFLARTPDAVLSETGTPEKPGRQNLPGA---EDGDGFFYAKLIKK 429
>gi|378824115|ref|ZP_09846657.1| ribosomal RNA small subunit methyltransferase B [Sutterella
parvirubra YIT 11816]
gi|378597065|gb|EHY30411.1| ribosomal RNA small subunit methyltransferase B [Sutterella
parvirubra YIT 11816]
Length = 439
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 53/134 (39%), Positives = 73/134 (54%), Gaps = 23/134 (17%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FD +L D PCT SG+VRR PD+PW RR DI+ L++ ++L LW ++K GG
Sbjct: 310 WWDKEPFDAVLLDAPCTASGIVRRQPDVPWNRRPVDIRALAREQARLLKALWPLVKKGGH 369
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDS------------------IRLNSPGQLLPTVNK 122
LLFVTCS++ EE EQ F D+ R SP + P V
Sbjct: 370 LLFVTCSIFPEEGPEQVSRFLAETPDAENVPLAPGLDGMMRLIPLARDTSPDGIEPAV-- 427
Query: 123 KQDYDGFFYSLFQK 136
+DGFFY+LF+K
Sbjct: 428 ---HDGFFYALFRK 438
>gi|422007064|ref|ZP_16354051.1| 16S rRNA methyltransferase B [Providencia rettgeri Dmel1]
gi|414097910|gb|EKT59562.1| 16S rRNA methyltransferase B [Providencia rettgeri Dmel1]
Length = 427
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 52/119 (43%), Positives = 74/119 (62%), Gaps = 8/119 (6%)
Query: 23 KNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLL 82
+ + FDRIL D PC+ +GV+RR+PDI WLRR +DI +L++ +IL +W LKPGG L+
Sbjct: 312 QGQQFDRILLDAPCSATGVIRRHPDIKWLRRDSDINELAQLQSQILEAIWPYLKPGGTLV 371
Query: 83 FVTCSLWFEESEEQAIIFSKNHKDSIRLNSPG----QLLPTVNKKQDYDGFFYSLFQKR 137
+ TCS+ EE+ +Q F H D+ LN Q+LP+ N DGFFY+ K+
Sbjct: 372 YATCSIMPEENGKQIHNFLSKHNDAC-LNDGTDAGLQILPSTNGG---DGFFYARLVKK 426
>gi|345869608|ref|ZP_08821565.1| sun protein [Thiorhodococcus drewsii AZ1]
gi|343922991|gb|EGV33688.1| sun protein [Thiorhodococcus drewsii AZ1]
Length = 455
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 49/125 (39%), Positives = 75/125 (60%), Gaps = 13/125 (10%)
Query: 22 YKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKL 81
+ + +DRIL D+PC+ +GV+RR+PDI WLRR++DI+ L + +IL+ +W +L PGG+L
Sbjct: 331 WAERRYDRILLDVPCSATGVIRRHPDIKWLRRESDIETLRETQRRILDAIWPLLAPGGRL 390
Query: 82 LFVTCSLWFEESEEQAIIFSKNHKDSIR----------LNSPGQLLPTVNKKQDYDGFFY 131
L+ TCSL +E++ Q F ++ L QLLPT DGF+Y
Sbjct: 391 LYATCSLLPQENQSQIAAFLSRQPEAREIALETERGRALQHGRQLLPTAGGS---DGFYY 447
Query: 132 SLFQK 136
+L +K
Sbjct: 448 ALIEK 452
>gi|334125893|ref|ZP_08499877.1| RNA methyltransferase Sun [Enterobacter hormaechei ATCC 49162]
gi|333386293|gb|EGK57510.1| RNA methyltransferase Sun [Enterobacter hormaechei ATCC 49162]
Length = 428
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 52/117 (44%), Positives = 74/117 (63%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DIK+L++ +IL+ +W LKPGG L++ TC
Sbjct: 315 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIKELAQLQSEILDAIWPHLKPGGTLVYATC 374
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ +Q F K D+ ++ PG Q LP ++ DGFFY+ K+
Sbjct: 375 SVLPEENSQQIAAFLKRTPDATLHDTGTPEHPGLQNLPGA---EEGDGFFYAKLIKK 428
>gi|294638022|ref|ZP_06716282.1| ribosomal RNA small subunit methyltransferase B [Edwardsiella tarda
ATCC 23685]
gi|451967545|ref|ZP_21920784.1| 16S rRNA methyltransferase RsmB [Edwardsiella tarda NBRC 105688]
gi|291088814|gb|EFE21375.1| ribosomal RNA small subunit methyltransferase B [Edwardsiella tarda
ATCC 23685]
gi|451313644|dbj|GAC66146.1| 16S rRNA methyltransferase RsmB [Edwardsiella tarda NBRC 105688]
Length = 430
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 50/115 (43%), Positives = 73/115 (63%), Gaps = 11/115 (9%)
Query: 25 KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 84
+ FDRIL D PC+ +GV+RR+PDI WLRR +DI +L+ +IL +W +LKPGG +++
Sbjct: 315 RQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELAALQREILEAVWPLLKPGGVMVYA 374
Query: 85 TCSLWFEESEEQAIIFSKNHKDSIRLNSPG-------QLLPTVNKKQDYDGFFYS 132
TCS+ +E+ EQ + F +H D+ RL G Q LP + + DGFFY+
Sbjct: 375 TCSVLPQENREQILAFLAHHDDA-RLAETGDAQQPGLQYLP---QSEGGDGFFYA 425
>gi|333375986|ref|ZP_08467782.1| ribosomal RNA small subunit methyltransferase B [Kingella kingae
ATCC 23330]
gi|332969155|gb|EGK08187.1| ribosomal RNA small subunit methyltransferase B [Kingella kingae
ATCC 23330]
Length = 418
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 52/111 (46%), Positives = 72/111 (64%), Gaps = 5/111 (4%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FD ILAD+PCT SG ++RNPDI WLRR ND K ++ +L+ LWK LK GG++L TC
Sbjct: 313 FDVILADVPCTASGTIKRNPDIKWLRRPNDALKTAQQQEIMLDELWKTLKQGGRMLLATC 372
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
S++ E++ Q F + H D+ L L+P N+KQ DGF+Y+L K+
Sbjct: 373 SIFEAENQLQCQKFLRRHADATLLEEK-VLIP--NEKQ--DGFYYALIHKK 418
>gi|344344899|ref|ZP_08775758.1| sun protein [Marichromatium purpuratum 984]
gi|343803593|gb|EGV21500.1| sun protein [Marichromatium purpuratum 984]
Length = 447
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 50/120 (41%), Positives = 69/120 (57%), Gaps = 13/120 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
F+RIL D+PC+ +GV+RR+PDI WLRR DI L IL +W +L PGG+LL+ TC
Sbjct: 328 FERILLDVPCSATGVIRRHPDIKWLRRAEDIAALCDQQRAILEAIWPLLAPGGRLLYATC 387
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPG----------QLLPTVNKKQDYDGFFYSLFQK 136
SL +E+ Q F + H ++ PG QLLP+ DGF+Y+L +K
Sbjct: 388 SLLGDENHRQVAAFLERHPEAHECPLPGAPGVARPHGRQLLPSSGGS---DGFYYALLEK 444
>gi|390436441|ref|ZP_10224979.1| 16S rRNA methyltransferase B [Pantoea agglomerans IG1]
Length = 433
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 49/118 (41%), Positives = 74/118 (62%), Gaps = 5/118 (4%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
++ FDRIL D PC+ +GV+RR+PDI WLRR DI +L+K +IL+ +W LKPGG L++
Sbjct: 313 DRQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAKLQGEILDAIWLHLKPGGTLIY 372
Query: 84 VTCSLWFEESEEQAIIFSKNHKDS----IRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
TCS+ EE+ +Q F + D+ +R ++P L + + DGFFY+ K+
Sbjct: 373 ATCSILPEENHQQIDAFLQRQHDAQAEPLR-DAPANGLQVFPEAEGGDGFFYAKLIKK 429
>gi|374313841|ref|YP_005060270.1| ribosomal RNA small subunit methyltransferase B [Serratia
symbiotica str. 'Cinara cedri']
gi|363988067|gb|AEW44258.1| ribosomal RNA small subunit methyltransferase B [Serratia
symbiotica str. 'Cinara cedri']
Length = 429
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 54/111 (48%), Positives = 69/111 (62%), Gaps = 5/111 (4%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
NK FDRIL D PC+ SGV+RR+PDI WLRR DI K + +IL +W LK G +++
Sbjct: 313 NKQFDRILLDAPCSASGVIRRHPDIKWLRRDCDIAKFTSLQAEILTAIWPHLKSSGVMIY 372
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQL-LP---TVNKKQDYDGFF 130
TCS+ EE+ EQ F KNHK++ RL G L LP + +D DGFF
Sbjct: 373 ATCSILPEENSEQIAAFLKNHKNA-RLVETGSLELPGQQNLPHPEDGDGFF 422
>gi|419960317|ref|ZP_14476359.1| 16S rRNA methyltransferase B [Enterobacter cloacae subsp. cloacae
GS1]
gi|388604809|gb|EIM34037.1| 16S rRNA methyltransferase B [Enterobacter cloacae subsp. cloacae
GS1]
Length = 420
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 51/112 (45%), Positives = 72/112 (64%), Gaps = 9/112 (8%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DIK+L++ +IL+ +W LKPGG L++ TC
Sbjct: 307 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIKELAQLQSEILDAIWPHLKPGGTLVYATC 366
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 132
S+ EE+ +Q F K D+ ++ PG Q LP ++ DGFFY+
Sbjct: 367 SVLPEENSQQIAAFLKRTPDATLHDTGTPEHPGLQNLPGA---EEGDGFFYA 415
>gi|229508832|ref|ZP_04398323.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
B33]
gi|229517103|ref|ZP_04406549.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
RC9]
gi|229606604|ref|YP_002877252.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
MJ-1236]
gi|255746774|ref|ZP_05420720.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholera
CIRS 101]
gi|360036732|ref|YP_004938495.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae O1
str. 2010EL-1786]
gi|417811127|ref|ZP_12457795.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-49A2]
gi|417814880|ref|ZP_12461524.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HCUF01]
gi|418330756|ref|ZP_12941723.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-06A1]
gi|418339218|ref|ZP_12948110.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-23A1]
gi|418342288|ref|ZP_12949109.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-28A1]
gi|418347470|ref|ZP_12952212.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-43A1]
gi|418356611|ref|ZP_12959327.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-61A1]
gi|419824519|ref|ZP_14348032.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
CP1033(6)]
gi|421315277|ref|ZP_15765853.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
CP1032(5)]
gi|421318846|ref|ZP_15769410.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
CP1038(11)]
gi|421322899|ref|ZP_15773434.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
CP1041(14)]
gi|421326351|ref|ZP_15776872.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
CP1042(15)]
gi|421333969|ref|ZP_15784443.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
CP1048(21)]
gi|421337784|ref|ZP_15788228.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-20A2]
gi|421345295|ref|ZP_15795685.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-46A1]
gi|422890072|ref|ZP_16932529.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-40A1]
gi|422900647|ref|ZP_16936278.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-48A1]
gi|422905040|ref|ZP_16939926.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-70A1]
gi|422911789|ref|ZP_16946337.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HFU-02]
gi|422924255|ref|ZP_16957323.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-38A1]
gi|423143320|ref|ZP_17130954.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-19A1]
gi|423148300|ref|ZP_17135677.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-21A1]
gi|423152089|ref|ZP_17139319.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-22A1]
gi|423154880|ref|ZP_17142031.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-32A1]
gi|423158745|ref|ZP_17145731.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-33A2]
gi|423163408|ref|ZP_17150223.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-48B2]
gi|423729411|ref|ZP_17702761.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-17A1]
gi|423888034|ref|ZP_17724978.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-62A1]
gi|423920446|ref|ZP_17729591.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-77A1]
gi|424000591|ref|ZP_17743700.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-17A2]
gi|424004757|ref|ZP_17747760.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-37A1]
gi|424022553|ref|ZP_17762235.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-62B1]
gi|424025573|ref|ZP_17765208.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-69A1]
gi|424593571|ref|ZP_18032929.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
CP1040(13)]
gi|424605175|ref|ZP_18044161.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
CP1050(23)]
gi|424608901|ref|ZP_18047778.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-39A1]
gi|424611807|ref|ZP_18050634.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-41A1]
gi|424615697|ref|ZP_18054407.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-42A1]
gi|424620446|ref|ZP_18058993.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-47A1]
gi|424643264|ref|ZP_18081039.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-56A2]
gi|424651195|ref|ZP_18088736.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-57A2]
gi|424655149|ref|ZP_18092466.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-81A2]
gi|440712031|ref|ZP_20892657.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
4260B]
gi|443502101|ref|ZP_21069110.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-64A1]
gi|443506001|ref|ZP_21072817.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-65A1]
gi|443509838|ref|ZP_21076529.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-67A1]
gi|443513678|ref|ZP_21080240.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-68A1]
gi|443517486|ref|ZP_21083929.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-71A1]
gi|443522073|ref|ZP_21088340.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-72A2]
gi|443529007|ref|ZP_21095030.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-7A1]
gi|443533745|ref|ZP_21099685.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-80A1]
gi|443536569|ref|ZP_21102429.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-81A1]
gi|449054720|ref|ZP_21733388.1| Ribosomal RNA small subunit methyltransferase B [Vibrio cholerae O1
str. Inaba G4222]
gi|229346166|gb|EEO11138.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
RC9]
gi|229354107|gb|EEO19039.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
B33]
gi|229369259|gb|ACQ59682.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
MJ-1236]
gi|255735531|gb|EET90930.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholera
CIRS 101]
gi|340046052|gb|EGR06987.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HCUF01]
gi|340046237|gb|EGR07168.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-49A2]
gi|341627248|gb|EGS52572.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-70A1]
gi|341628587|gb|EGS53815.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-48A1]
gi|341628789|gb|EGS53983.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-40A1]
gi|341642063|gb|EGS66551.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HFU-02]
gi|341649320|gb|EGS73299.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-38A1]
gi|356423390|gb|EHH76842.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-06A1]
gi|356424045|gb|EHH77467.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-21A1]
gi|356428086|gb|EHH81316.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-19A1]
gi|356428771|gb|EHH81992.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-23A1]
gi|356436238|gb|EHH89358.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-22A1]
gi|356439187|gb|EHH92176.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-28A1]
gi|356446909|gb|EHH99700.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-32A1]
gi|356448902|gb|EHI01663.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-43A1]
gi|356450783|gb|EHI03493.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-61A1]
gi|356451472|gb|EHI04157.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-33A2]
gi|356456922|gb|EHI09499.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-48B2]
gi|356647886|gb|AET27941.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae O1
str. 2010EL-1786]
gi|395924241|gb|EJH35047.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
CP1032(5)]
gi|395925483|gb|EJH36281.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
CP1041(14)]
gi|395926599|gb|EJH37377.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
CP1038(11)]
gi|395936075|gb|EJH46805.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
CP1042(15)]
gi|395938332|gb|EJH49026.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
CP1048(21)]
gi|395948322|gb|EJH58973.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-20A2]
gi|395948905|gb|EJH59540.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-46A1]
gi|395965512|gb|EJH75681.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-56A2]
gi|395965661|gb|EJH75824.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-57A2]
gi|395967968|gb|EJH77992.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-42A1]
gi|395977467|gb|EJH86876.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-47A1]
gi|408011527|gb|EKG49337.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-39A1]
gi|408018597|gb|EKG56035.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-41A1]
gi|408038951|gb|EKG75264.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
CP1040(13)]
gi|408047914|gb|EKG83411.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
CP1050(23)]
gi|408058398|gb|EKG93201.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-81A2]
gi|408613049|gb|EKK86380.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
CP1033(6)]
gi|408629221|gb|EKL01930.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-17A1]
gi|408661013|gb|EKL32009.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-77A1]
gi|408661695|gb|EKL32678.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-62A1]
gi|408850349|gb|EKL90314.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-37A1]
gi|408850958|gb|EKL90899.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-17A2]
gi|408876609|gb|EKM15722.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-62B1]
gi|408882470|gb|EKM21289.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-69A1]
gi|439972276|gb|ELP48571.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
4260B]
gi|443433584|gb|ELS76085.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-64A1]
gi|443437414|gb|ELS83505.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-65A1]
gi|443441253|gb|ELS90915.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-67A1]
gi|443445069|gb|ELS98320.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-68A1]
gi|443448903|gb|ELT05512.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-71A1]
gi|443451966|gb|ELT12203.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-72A2]
gi|443460270|gb|ELT27658.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-7A1]
gi|443463093|gb|ELT34104.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-80A1]
gi|443467816|gb|ELT42470.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-81A1]
gi|448265866|gb|EMB03099.1| Ribosomal RNA small subunit methyltransferase B [Vibrio cholerae O1
str. Inaba G4222]
Length = 426
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 49/123 (39%), Positives = 80/123 (65%), Gaps = 8/123 (6%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
++++ + FDRIL D PC+ +GV+RR+PDI WLRR +DI L++ +IL+ +W+ LKPGG
Sbjct: 306 QWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREILDAMWQQLKPGG 365
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFYSLF 134
L++ TCS+ +E+ Q F + D+ + S PG Q+LP ++ DGF+Y++
Sbjct: 366 SLVYATCSITPQENRLQVKAFLERTPDARLVGSEPAQPGRQILP---GEEAMDGFYYAVL 422
Query: 135 QKR 137
K+
Sbjct: 423 SKQ 425
>gi|229515917|ref|ZP_04405374.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
TMA 21]
gi|229524946|ref|ZP_04414351.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
bv. albensis VL426]
gi|417818647|ref|ZP_12465269.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HE39]
gi|419834985|ref|ZP_14358435.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-46B1]
gi|421341586|ref|ZP_15791997.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-43B1]
gi|423733324|ref|ZP_17706563.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-41B1]
gi|423941755|ref|ZP_17732988.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HE-40]
gi|423973176|ref|ZP_17736533.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HE-46]
gi|424007625|ref|ZP_17750587.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-44C1]
gi|229338527|gb|EEO03544.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
bv. albensis VL426]
gi|229347017|gb|EEO11979.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
TMA 21]
gi|340044255|gb|EGR05208.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HE39]
gi|395948214|gb|EJH58867.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-43B1]
gi|408632790|gb|EKL05225.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-41B1]
gi|408662688|gb|EKL33600.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HE-40]
gi|408666642|gb|EKL37421.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HE-46]
gi|408859713|gb|EKL99368.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-46B1]
gi|408868375|gb|EKM07711.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-44C1]
Length = 426
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 49/123 (39%), Positives = 80/123 (65%), Gaps = 8/123 (6%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
++++ + FDRIL D PC+ +GV+RR+PDI WLRR +DI L++ +IL+ +W+ LKPGG
Sbjct: 306 QWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREILDAMWQQLKPGG 365
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFYSLF 134
L++ TCS+ +E+ Q F + D+ + S PG Q+LP ++ DGF+Y++
Sbjct: 366 SLVYATCSITPQENRLQVKAFLERTPDARLVGSDPAQPGRQILP---GEEAMDGFYYAVL 422
Query: 135 QKR 137
K+
Sbjct: 423 SKQ 425
>gi|229508329|ref|ZP_04397833.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae BX
330286]
gi|262155855|ref|ZP_06028977.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
INDRE 91/1]
gi|262166898|ref|ZP_06034619.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
RC27]
gi|379739949|ref|YP_005331918.1| 16S rRNA methyltransferase B [Vibrio cholerae IEC224]
gi|421330276|ref|ZP_15780764.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
CP1046(19)]
gi|424584944|ref|ZP_18024555.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
CP1030(3)]
gi|424589318|ref|ZP_18028782.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
CP1037(10)]
gi|424597499|ref|ZP_18036715.1| ribosomal RNA small subunit methyltransferase B [Vibrio Cholerae
CP1044(17)]
gi|424600276|ref|ZP_18039449.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
CP1047(20)]
gi|229354602|gb|EEO19524.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae BX
330286]
gi|262024669|gb|EEY43349.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
RC27]
gi|262030307|gb|EEY48949.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
INDRE 91/1]
gi|378793459|gb|AFC56930.1| 16S rRNA methyltransferase B [Vibrio cholerae IEC224]
gi|395936451|gb|EJH47175.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
CP1046(19)]
gi|395979826|gb|EJH89151.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
CP1030(3)]
gi|395980230|gb|EJH89519.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
CP1047(20)]
gi|408037961|gb|EKG74321.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
CP1037(10)]
gi|408046143|gb|EKG81859.1| ribosomal RNA small subunit methyltransferase B [Vibrio Cholerae
CP1044(17)]
Length = 426
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 49/123 (39%), Positives = 80/123 (65%), Gaps = 8/123 (6%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
++++ + FDRIL D PC+ +GV+RR+PDI WLRR +DI L++ +IL+ +W+ LKPGG
Sbjct: 306 QWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREILDAMWQQLKPGG 365
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFYSLF 134
L++ TCS+ +E+ Q F + D+ + S PG Q+LP ++ DGF+Y++
Sbjct: 366 SLVYATCSITPQENRLQVKAFLERTPDARLVGSDPAQPGRQILP---GEEAMDGFYYAVL 422
Query: 135 QKR 137
K+
Sbjct: 423 SKQ 425
>gi|422305454|ref|ZP_16392658.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
CP1035(8)]
gi|408628844|gb|EKL01562.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
CP1035(8)]
Length = 426
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 49/123 (39%), Positives = 80/123 (65%), Gaps = 8/123 (6%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
++++ + FDRIL D PC+ +GV+RR+PDI WLRR +DI L++ +IL+ +W+ LKPGG
Sbjct: 306 QWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREILDAMWQQLKPGG 365
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFYSLF 134
L++ TCS+ +E+ Q F + D+ + S PG Q+LP ++ DGF+Y++
Sbjct: 366 SLVYATCSITPQENRLQVKAFLERTPDARLVGSDPAQPGRQILP---GEEAMDGFYYAVL 422
Query: 135 QKR 137
K+
Sbjct: 423 SKQ 425
>gi|419827748|ref|ZP_14351243.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-1A2]
gi|419831371|ref|ZP_14354846.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-61A2]
gi|422915775|ref|ZP_16950140.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-02A1]
gi|423810683|ref|ZP_17714729.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-55C2]
gi|423844921|ref|ZP_17718467.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-59A1]
gi|423876953|ref|ZP_17722134.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-60A1]
gi|423994708|ref|ZP_17739472.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-02C1]
gi|424011990|ref|ZP_17754755.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-55B2]
gi|424018002|ref|ZP_17757820.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-59B1]
gi|424623383|ref|ZP_18061875.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-50A1]
gi|424627953|ref|ZP_18066280.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-51A1]
gi|424631901|ref|ZP_18070039.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-52A1]
gi|424634989|ref|ZP_18073025.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-55A1]
gi|424638814|ref|ZP_18076726.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-56A1]
gi|424647068|ref|ZP_18084762.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-57A1]
gi|443525940|ref|ZP_21092047.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-78A1]
gi|341642136|gb|EGS66623.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-02A1]
gi|408017702|gb|EKG55188.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-50A1]
gi|408023435|gb|EKG60599.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-52A1]
gi|408028527|gb|EKG65417.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-56A1]
gi|408028786|gb|EKG65648.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-55A1]
gi|408038782|gb|EKG75109.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-57A1]
gi|408060041|gb|EKG94758.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-51A1]
gi|408624759|gb|EKK97697.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-1A2]
gi|408637513|gb|EKL09561.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-55C2]
gi|408645396|gb|EKL17051.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-60A1]
gi|408646495|gb|EKL18095.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-59A1]
gi|408652868|gb|EKL24059.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-61A2]
gi|408855786|gb|EKL95482.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-02C1]
gi|408863211|gb|EKM02703.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-55B2]
gi|408871813|gb|EKM11041.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-59B1]
gi|443455748|gb|ELT19508.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HC-78A1]
Length = 426
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 49/123 (39%), Positives = 80/123 (65%), Gaps = 8/123 (6%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
++++ + FDRIL D PC+ +GV+RR+PDI WLRR +DI L++ +IL+ +W+ LKPGG
Sbjct: 306 QWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREILDAMWQQLKPGG 365
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFYSLF 134
L++ TCS+ +E+ Q F + D+ + S PG Q+LP ++ DGF+Y++
Sbjct: 366 SLVYATCSITPQENRLQVKAFLERTPDARLVGSDPAQPGRQILP---GEEAMDGFYYAVL 422
Query: 135 QKR 137
K+
Sbjct: 423 SKQ 425
>gi|422908559|ref|ZP_16943250.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HE-09]
gi|341640169|gb|EGS64761.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HE-09]
Length = 426
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 49/123 (39%), Positives = 80/123 (65%), Gaps = 8/123 (6%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
++++ + FDRIL D PC+ +GV+RR+PDI WLRR +DI L++ +IL+ +W+ LKPGG
Sbjct: 306 QWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREILDAMWQQLKPGG 365
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFYSLF 134
L++ TCS+ +E+ Q F + D+ + S PG Q+LP ++ DGF+Y++
Sbjct: 366 SLVYATCSITPQENRLQVKAFLERTPDARLVGSDPAQPGRQILP---GEEAMDGFYYAVL 422
Query: 135 QKR 137
K+
Sbjct: 423 SKQ 425
>gi|417822209|ref|ZP_12468811.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HE48]
gi|340049822|gb|EGR10734.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HE48]
Length = 426
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 49/123 (39%), Positives = 80/123 (65%), Gaps = 8/123 (6%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
++++ + FDRIL D PC+ +GV+RR+PDI WLRR +DI L++ +IL+ +W+ LKPGG
Sbjct: 306 QWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREILDAMWQQLKPGG 365
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFYSLF 134
L++ TCS+ +E+ Q F + D+ + S PG Q+LP ++ DGF+Y++
Sbjct: 366 SLVYATCSITPQENRLQVKAFLERTPDARLVGSDPAQPGRQILP---GEEAMDGFYYAVL 422
Query: 135 QKR 137
K+
Sbjct: 423 SKQ 425
>gi|229520215|ref|ZP_04409642.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae TM
11079-80]
gi|421352813|ref|ZP_15803153.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HE-45]
gi|229342809|gb|EEO07800.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae TM
11079-80]
gi|395956961|gb|EJH67550.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HE-45]
Length = 426
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 49/123 (39%), Positives = 80/123 (65%), Gaps = 8/123 (6%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
++++ + FDRIL D PC+ +GV+RR+PDI WLRR +DI L++ +IL+ +W+ LKPGG
Sbjct: 306 QWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREILDAMWQQLKPGG 365
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFYSLF 134
L++ TCS+ +E+ Q F + D+ + S PG Q+LP ++ DGF+Y++
Sbjct: 366 SLVYATCSITPQENRLQVKAFLERTPDARLVGSDPAQPGRQILP---GEEAMDGFYYAVL 422
Query: 135 QKR 137
K+
Sbjct: 423 SKQ 425
>gi|229530170|ref|ZP_04419559.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
12129(1)]
gi|384423402|ref|YP_005632760.1| Ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
LMA3984-4]
gi|424657931|ref|ZP_18095205.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HE-16]
gi|229332303|gb|EEN97790.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
12129(1)]
gi|327482955|gb|AEA77362.1| Ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
LMA3984-4]
gi|408057359|gb|EKG92211.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HE-16]
Length = 426
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 49/123 (39%), Positives = 80/123 (65%), Gaps = 8/123 (6%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
++++ + FDRIL D PC+ +GV+RR+PDI WLRR +DI L++ +IL+ +W+ LKPGG
Sbjct: 306 QWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREILDAMWQQLKPGG 365
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFYSLF 134
L++ TCS+ +E+ Q F + D+ + S PG Q+LP ++ DGF+Y++
Sbjct: 366 SLVYATCSITPQENRLQVKAFLERTPDARLVGSDPAQPGRQILP---GEEAMDGFYYAVL 422
Query: 135 QKR 137
K+
Sbjct: 423 SKQ 425
>gi|153821915|ref|ZP_01974582.1| sun protein [Vibrio cholerae B33]
gi|254851609|ref|ZP_05240959.1| sun protein [Vibrio cholerae MO10]
gi|126520535|gb|EAZ77758.1| sun protein [Vibrio cholerae B33]
gi|254847314|gb|EET25728.1| sun protein [Vibrio cholerae MO10]
Length = 434
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 49/123 (39%), Positives = 80/123 (65%), Gaps = 8/123 (6%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
++++ + FDRIL D PC+ +GV+RR+PDI WLRR +DI L++ +IL+ +W+ LKPGG
Sbjct: 314 QWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREILDAMWQQLKPGG 373
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFYSLF 134
L++ TCS+ +E+ Q F + D+ + S PG Q+LP ++ DGF+Y++
Sbjct: 374 SLVYATCSITPQENRLQVKAFLERTPDARLVGSEPAQPGRQILP---GEEAMDGFYYAVL 430
Query: 135 QKR 137
K+
Sbjct: 431 SKQ 433
>gi|153830135|ref|ZP_01982802.1| sun protein [Vibrio cholerae 623-39]
gi|254225568|ref|ZP_04919177.1| sun protein [Vibrio cholerae V51]
gi|254291095|ref|ZP_04961892.1| sun protein [Vibrio cholerae AM-19226]
gi|125621888|gb|EAZ50213.1| sun protein [Vibrio cholerae V51]
gi|148874399|gb|EDL72534.1| sun protein [Vibrio cholerae 623-39]
gi|150422940|gb|EDN14890.1| sun protein [Vibrio cholerae AM-19226]
Length = 434
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 49/123 (39%), Positives = 80/123 (65%), Gaps = 8/123 (6%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
++++ + FDRIL D PC+ +GV+RR+PDI WLRR +DI L++ +IL+ +W+ LKPGG
Sbjct: 314 QWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREILDAMWQQLKPGG 373
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFYSLF 134
L++ TCS+ +E+ Q F + D+ + S PG Q+LP ++ DGF+Y++
Sbjct: 374 SLVYATCSITPQENRLQVKAFLERTPDARLVGSDPAQPGRQILP---GEEAMDGFYYAVL 430
Query: 135 QKR 137
K+
Sbjct: 431 SKQ 433
>gi|153802771|ref|ZP_01957357.1| sun protein [Vibrio cholerae MZO-3]
gi|124121684|gb|EAY40427.1| sun protein [Vibrio cholerae MZO-3]
Length = 434
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 49/123 (39%), Positives = 80/123 (65%), Gaps = 8/123 (6%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
++++ + FDRIL D PC+ +GV+RR+PDI WLRR +DI L++ +IL+ +W+ LKPGG
Sbjct: 314 QWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREILDAMWQQLKPGG 373
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFYSLF 134
L++ TCS+ +E+ Q F + D+ + S PG Q+LP ++ DGF+Y++
Sbjct: 374 SLVYATCSITPQENRLQVKAFLERTPDARLVGSDPAQPGRQILP---GEEAMDGFYYAVL 430
Query: 135 QKR 137
K+
Sbjct: 431 SKQ 433
>gi|153212957|ref|ZP_01948551.1| sun protein [Vibrio cholerae 1587]
gi|153826427|ref|ZP_01979094.1| sun protein [Vibrio cholerae MZO-2]
gi|124116183|gb|EAY35003.1| sun protein [Vibrio cholerae 1587]
gi|149739813|gb|EDM54008.1| sun protein [Vibrio cholerae MZO-2]
Length = 434
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 49/123 (39%), Positives = 80/123 (65%), Gaps = 8/123 (6%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
++++ + FDRIL D PC+ +GV+RR+PDI WLRR +DI L++ +IL+ +W+ LKPGG
Sbjct: 314 QWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREILDAMWQQLKPGG 373
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFYSLF 134
L++ TCS+ +E+ Q F + D+ + S PG Q+LP ++ DGF+Y++
Sbjct: 374 SLVYATCSITPQENRLQVKAFLERTPDARLVGSDPAQPGRQILP---GEEAMDGFYYAVL 430
Query: 135 QKR 137
K+
Sbjct: 431 SKQ 433
>gi|15640076|ref|NP_229703.1| sun protein [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|121587275|ref|ZP_01677048.1| sun protein [Vibrio cholerae 2740-80]
gi|121727862|ref|ZP_01680921.1| sun protein [Vibrio cholerae V52]
gi|147675284|ref|YP_001218368.1| sun protein [Vibrio cholerae O395]
gi|153817606|ref|ZP_01970273.1| sun protein [Vibrio cholerae NCTC 8457]
gi|227080281|ref|YP_002808832.1| sun protein [Vibrio cholerae M66-2]
gi|227116503|ref|YP_002818399.1| sun protein [Vibrio cholerae O395]
gi|298501227|ref|ZP_07011026.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
MAK 757]
gi|46397040|sp|Q9KVU5.1|RSMB_VIBCH RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|9654437|gb|AAF93222.1| sun protein [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|121548521|gb|EAX58577.1| sun protein [Vibrio cholerae 2740-80]
gi|121629806|gb|EAX62221.1| sun protein [Vibrio cholerae V52]
gi|126511874|gb|EAZ74468.1| sun protein [Vibrio cholerae NCTC 8457]
gi|146317167|gb|ABQ21706.1| sun protein [Vibrio cholerae O395]
gi|227008169|gb|ACP04381.1| sun protein [Vibrio cholerae M66-2]
gi|227011953|gb|ACP08163.1| sun protein [Vibrio cholerae O395]
gi|297540099|gb|EFH76161.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
MAK 757]
Length = 434
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 49/123 (39%), Positives = 80/123 (65%), Gaps = 8/123 (6%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
++++ + FDRIL D PC+ +GV+RR+PDI WLRR +DI L++ +IL+ +W+ LKPGG
Sbjct: 314 QWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREILDAMWQQLKPGG 373
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFYSLF 134
L++ TCS+ +E+ Q F + D+ + S PG Q+LP ++ DGF+Y++
Sbjct: 374 SLVYATCSITPQENRLQVKAFLERTPDARLVGSDPAQPGRQILP---GEEAMDGFYYAVL 430
Query: 135 QKR 137
K+
Sbjct: 431 SKQ 433
>gi|441506695|ref|ZP_20988653.1| Ribosomal RNA small subunit methyltransferase B [Photobacterium sp.
AK15]
gi|441425636|gb|ELR63140.1| Ribosomal RNA small subunit methyltransferase B [Photobacterium sp.
AK15]
Length = 426
Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats.
Identities = 49/122 (40%), Positives = 78/122 (63%), Gaps = 8/122 (6%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
++++ + FDRIL D PC+ +GV+RR+PDI WLRR +DI L+ +I++ +W+ LKPGG
Sbjct: 306 QWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIDALALLQTEIVDAMWQQLKPGG 365
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFYSLF 134
L++ TCS+ +E+ Q F D+ + S PG Q+LP + D DGF+Y++
Sbjct: 366 TLVYATCSITPQENCNQVKAFLTRTADAELIGSDIEQPGRQILP---GEHDMDGFYYAVI 422
Query: 135 QK 136
+K
Sbjct: 423 RK 424
>gi|333929434|ref|YP_004503013.1| ribosomal RNA small subunit methyltransferase B [Serratia sp. AS12]
gi|333934387|ref|YP_004507965.1| ribosomal RNA small subunit methyltransferase B [Serratia
plymuthica AS9]
gi|386331257|ref|YP_006027427.1| Ribosomal RNA small subunit methyltransferase B [Serratia sp. AS13]
gi|333475994|gb|AEF47704.1| Ribosomal RNA small subunit methyltransferase B [Serratia
plymuthica AS9]
gi|333493494|gb|AEF52656.1| Ribosomal RNA small subunit methyltransferase B [Serratia sp. AS12]
gi|333963590|gb|AEG30363.1| Ribosomal RNA small subunit methyltransferase B [Serratia sp. AS13]
Length = 429
Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats.
Identities = 46/112 (41%), Positives = 71/112 (63%), Gaps = 3/112 (2%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
+K FDRIL D PC+ +GV+RR+PDI WLRR +DI +L+K +I++ +W LK GG +++
Sbjct: 313 DKQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELAKLQAEIIDAIWPHLKSGGVMVY 372
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLP---TVNKKQDYDGFFYS 132
TCS+ E+ EQ F + H D+ + + + P + +D DGFFY+
Sbjct: 373 ATCSILPTENAEQVTAFLQRHPDARLVETGNEQQPGRQNLPHPEDGDGFFYA 424
>gi|298370615|ref|ZP_06981930.1| ribosomal RNA small subunit methyltransferase B [Neisseria sp. oral
taxon 014 str. F0314]
gi|298281225|gb|EFI22715.1| ribosomal RNA small subunit methyltransferase B [Neisseria sp. oral
taxon 014 str. F0314]
Length = 425
Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats.
Identities = 50/117 (42%), Positives = 71/117 (60%), Gaps = 5/117 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y K FD +LAD+PCT SGVVRRNPDI W RR D K ++ +L+ LW+ L G+
Sbjct: 314 WYDGKQFDAVLADVPCTASGVVRRNPDIKWSRRPTDAVKTARQQEALLDALWQTLTKNGR 373
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
+L TCS++ EE+ +Q F H D+ G+ + NK Q DGF+Y+L +K+
Sbjct: 374 MLLATCSVFVEENTQQLQKFLNRHADA---KPAGEHVLLPNKYQ--DGFYYALIEKQ 425
>gi|295096932|emb|CBK86022.1| 16S rRNA m(5)C-967 methyltransferase [Enterobacter cloacae subsp.
cloacae NCTC 9394]
Length = 420
Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats.
Identities = 51/112 (45%), Positives = 72/112 (64%), Gaps = 9/112 (8%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DIK+L++ +IL+ +W LKPGG L++ TC
Sbjct: 307 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIKELAQLQSEILDAIWPHLKPGGTLVYATC 366
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 132
S+ EE+ +Q F K D+ ++ PG Q LP ++ DGFFY+
Sbjct: 367 SVLPEENSQQIAAFLKRTPDATLHDTGTPEHPGLQNLPGA---EEGDGFFYA 415
>gi|90406716|ref|ZP_01214909.1| sun protein [Psychromonas sp. CNPT3]
gi|90312169|gb|EAS40261.1| sun protein [Psychromonas sp. CNPT3]
Length = 434
Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats.
Identities = 52/122 (42%), Positives = 72/122 (59%), Gaps = 6/122 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++K + FDRIL D PC+ +GV+RR+PDI WLRR +DIK+L ILN LW LK GG
Sbjct: 311 WWKGEKFDRILCDAPCSATGVIRRHPDIRWLRRDSDIKELVSLQKSILNALWDKLKAGGI 370
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQ------DYDGFFYSLF 134
LL+ TCS+ +E++ Q F + H D+ + Q T +Q DGF+Y+
Sbjct: 371 LLYATCSILPDENDLQIKAFLETHADAKLVPLSKQYASTTVGRQLLPNDDTMDGFYYAKL 430
Query: 135 QK 136
QK
Sbjct: 431 QK 432
>gi|372275657|ref|ZP_09511693.1| 16S rRNA methyltransferase B [Pantoea sp. SL1_M5]
Length = 433
Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats.
Identities = 48/117 (41%), Positives = 72/117 (61%), Gaps = 3/117 (2%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
++ FDRIL D PC+ +GV+RR+PDI WLRR DI +L+K +IL+ +W LKPGG L++
Sbjct: 313 DRQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAKLQGEILDAIWPHLKPGGTLIY 372
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSIRL---NSPGQLLPTVNKKQDYDGFFYSLFQKR 137
TCS+ EE+ +Q F + D+ ++P L + + DGFFY+ K+
Sbjct: 373 ATCSILPEENHQQIDAFLQRQHDAQAEPLGDAPANGLQVFPEAEGGDGFFYAKLIKK 429
>gi|317049808|ref|YP_004117456.1| sun protein [Pantoea sp. At-9b]
gi|316951425|gb|ADU70900.1| sun protein [Pantoea sp. At-9b]
Length = 428
Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats.
Identities = 51/120 (42%), Positives = 70/120 (58%), Gaps = 9/120 (7%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
+K FDRIL D PC+ +GV+RR+PDI WLRR DI +L+ +IL+ +W LK GG LL+
Sbjct: 312 DKQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELASLQREILHAVWPRLKSGGTLLY 371
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSIRLNSPG------QLLPTVNKKQDYDGFFYSLFQKR 137
TCS+ EE+ +Q F H D+I P Q+ P + DGFFY+ K+
Sbjct: 372 ATCSVLPEENHQQITAFLATHPDAIAEALPHGQENGWQVFPATDGG---DGFFYAKLMKK 428
>gi|31559059|gb|AAP50513.1| Fmv [Vibrio vulnificus]
Length = 178
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 80/137 (58%), Gaps = 8/137 (5%)
Query: 6 IESSDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSC 65
+++ I N ++++ + FDRIL D PC+ +GV+RR+PDI WLRR DI L++
Sbjct: 44 LQAKVICGDARNPEQWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRTEDITALAQLQS 103
Query: 66 KILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIF-----SKNHKDSIRLNSPGQLLPTV 120
+I + +W LKPGG L++ TCS+ E+ EQ F + S R N Q++P
Sbjct: 104 EIFDAMWAQLKPGGTLVYATCSITPMENVEQVKAFLARTSAAQLVGSERENPGRQIIP-- 161
Query: 121 NKKQDYDGFFYSLFQKR 137
++D DGF+Y++ K+
Sbjct: 162 -GEEDMDGFYYAVLVKQ 177
>gi|421785890|ref|ZP_16222311.1| ribosomal RNA small subunit methyltransferase B [Serratia
plymuthica A30]
gi|407751928|gb|EKF62090.1| ribosomal RNA small subunit methyltransferase B [Serratia
plymuthica A30]
Length = 386
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 71/112 (63%), Gaps = 3/112 (2%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
+K FDRIL D PC+ +GV+RR+PDI WLRR +DI +L+K +I++ +W LK GG +++
Sbjct: 270 DKQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELAKLQAEIIDAIWPHLKSGGVMVY 329
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLP---TVNKKQDYDGFFYS 132
TCS+ E+ EQ F + H D+ + + + P + +D DGFFY+
Sbjct: 330 ATCSILPTENAEQITAFLQRHPDARLVETGDEQQPGRQNLPHPEDGDGFFYA 381
>gi|420377550|ref|ZP_14877138.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
1235-66]
gi|391295091|gb|EIQ53261.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
1235-66]
Length = 429
Score = 102 bits (253), Expect = 6e-20, Method: Composition-based stats.
Identities = 52/117 (44%), Positives = 72/117 (61%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +ILN W LKPGG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILNATWLHLKPGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+++Q F D++ + PG Q LP +D DGFFY+ K+
Sbjct: 376 SILPEENQQQIAAFLACTPDAVLSETGTPEKPGRQNLPGA---EDGDGFFYAKLIKK 429
>gi|146329596|ref|YP_001209088.1| rRNA SAM-dependent methyltransferase, Fmu [Dichelobacter nodosus
VCS1703A]
gi|146233066|gb|ABQ14044.1| rRNA SAM-dependent methyltransferase, Fmu [Dichelobacter nodosus
VCS1703A]
Length = 418
Score = 102 bits (253), Expect = 6e-20, Method: Composition-based stats.
Identities = 52/131 (39%), Positives = 75/131 (57%), Gaps = 20/131 (15%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y FD IL D PC+GSGV+RR+PDI WLR +D+K+L K ++L+ LW+ LK GG+
Sbjct: 294 WYDGHAFDAILLDAPCSGSGVIRRHPDIAWLRSDSDLKQLPKTQYRLLDTLWQTLKIGGR 353
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKK-------------QDYD 127
LL+ TCS+ E+++ F H+++ QL P K D D
Sbjct: 354 LLYTTCSILPRENQQLIEQFLYTHREA-------QLRPITLPKGLDTGHGWLHYPDADGD 406
Query: 128 GFFYSLFQKRK 138
GFFY+L +KR+
Sbjct: 407 GFFYALLEKRE 417
>gi|390951439|ref|YP_006415198.1| 16S rRNA m(5)C967 methyltransferase [Thiocystis violascens DSM 198]
gi|390428008|gb|AFL75073.1| 16S rRNA m(5)C-967 methyltransferase [Thiocystis violascens DSM
198]
Length = 457
Score = 102 bits (253), Expect = 6e-20, Method: Composition-based stats.
Identities = 48/125 (38%), Positives = 73/125 (58%), Gaps = 13/125 (10%)
Query: 22 YKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKL 81
+ + FDRIL D+PC+ +GV+RR+PDI WLRR DI +L+ +L+ +W +L PGG+L
Sbjct: 333 WTERPFDRILLDVPCSATGVIRRHPDIKWLRRDRDIPELAATQAAMLDAIWPLLAPGGRL 392
Query: 82 LFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPG----------QLLPTVNKKQDYDGFFY 131
L+ TCSL EE+ EQ F ++ + P Q LPT + DGF+Y
Sbjct: 393 LYATCSLLAEENHEQIAAFLSRQPEARERDLPTASGQTCPRGRQWLPTPDGS---DGFYY 449
Query: 132 SLFQK 136
++ ++
Sbjct: 450 AIIER 454
>gi|270264342|ref|ZP_06192608.1| hypothetical protein SOD_h00090 [Serratia odorifera 4Rx13]
gi|270041478|gb|EFA14576.1| hypothetical protein SOD_h00090 [Serratia odorifera 4Rx13]
Length = 429
Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats.
Identities = 52/116 (44%), Positives = 73/116 (62%), Gaps = 11/116 (9%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
+K FDRIL D PC+ +GV+RR+PDI WLRR +DI +L+K +I++ +W LK GG +++
Sbjct: 313 DKQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELAKLQAEIIDAIWPHLKSGGVMVY 372
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSIRL------NSPG-QLLPTVNKKQDYDGFFYS 132
TCS+ E+ EQ F + H D+ RL PG Q LP +D DGFFY+
Sbjct: 373 ATCSILPTENAEQITAFLQRHPDA-RLVETGDEQQPGRQNLP---HPEDGDGFFYA 424
>gi|254435259|ref|ZP_05048766.1| ribosomal RNA small subunit methyltransferase B [Nitrosococcus
oceani AFC27]
gi|207088370|gb|EDZ65642.1| ribosomal RNA small subunit methyltransferase B [Nitrosococcus
oceani AFC27]
Length = 435
Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats.
Identities = 52/118 (44%), Positives = 74/118 (62%), Gaps = 7/118 (5%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+GSGV+RR+PDI LRR++DI L+ ++L+ LW +L PGG LL+ TC
Sbjct: 318 FDRILLDAPCSGSGVIRRHPDIKALRRESDILPLATLQKRLLSALWPLLAPGGMLLYCTC 377
Query: 87 SLWFEESEEQAIIFSKNHKDSIR--LNSPGQLLPTVNKK-----QDYDGFFYSLFQKR 137
S+ E+E+Q F H D L+ P LL T ++ ++ DGF+Y+ +KR
Sbjct: 378 SILPIENEQQIREFLLTHPDGQERPLDVPWGLLQTAGRQLLTGMEELDGFYYACLEKR 435
>gi|238788880|ref|ZP_04632670.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
frederiksenii ATCC 33641]
gi|238722907|gb|EEQ14557.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
frederiksenii ATCC 33641]
Length = 429
Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats.
Identities = 50/120 (41%), Positives = 77/120 (64%), Gaps = 9/120 (7%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
++ FDRIL D PC+ +GV+RR+PDI WLRR +DI +L+K +I+ +W LK GG +++
Sbjct: 313 DQQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELAKLQSEIIEAIWPKLKKGGVMVY 372
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSIRL-----NSPG-QLLPTVNKKQDYDGFFYSLFQKR 137
TCS+ EE+++Q F + H ++ + ++PG Q LP +D DGFFY+ KR
Sbjct: 373 ATCSILPEENQQQITAFLQRHDEAELVETGTASAPGRQNLP---HPEDGDGFFYAKLIKR 429
>gi|226329513|ref|ZP_03805031.1| hypothetical protein PROPEN_03422 [Proteus penneri ATCC 35198]
gi|225202699|gb|EEG85053.1| putative ribosomal RNA small subunit methyltransferase B [Proteus
penneri ATCC 35198]
Length = 206
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 83/128 (64%), Gaps = 6/128 (4%)
Query: 11 INKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKIL 68
+ K + R+ ++ FDRIL D PC+ +GV+RR+PDI WLRR +DI++L++ +IL
Sbjct: 82 VVKSGDGRYPEKWCAGMQFDRILLDAPCSATGVIRRHPDIKWLRRNDDIEQLAQIQKEIL 141
Query: 69 NNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDG 128
+ +W LK GG L++ TCS+ EE+++Q F + KD+ + + Q LP +++ DG
Sbjct: 142 HAIWPYLKSGGTLVYATCSILPEENKQQIEAFLASTKDA-QCDYQHQCLP---EEEGGDG 197
Query: 129 FFYSLFQK 136
FFY+L +K
Sbjct: 198 FFYALIKK 205
>gi|319940730|ref|ZP_08015072.1| hypothetical protein HMPREF9464_00291 [Sutterella wadsworthensis
3_1_45B]
gi|319805881|gb|EFW02648.1| hypothetical protein HMPREF9464_00291 [Sutterella wadsworthensis
3_1_45B]
Length = 456
Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats.
Identities = 49/133 (36%), Positives = 74/133 (55%), Gaps = 17/133 (12%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FD IL D PCT SG+VRR PD+PW RR D +L++ ++LN LW ++K GG+
Sbjct: 323 WHSGREFDAILLDAPCTASGIVRRQPDVPWSRRPEDPARLAREQARLLNALWPLVKKGGR 382
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRL---NSPGQLL--------------PTVNKK 123
LL+ TCS++ EE +Q F+ NH D+ +P ++ P +
Sbjct: 383 LLYCTCSIFPEEGPDQIRRFTANHGDAQLTAFKGAPTGMMSLVPADHVHELPFNPNAAEP 442
Query: 124 QDYDGFFYSLFQK 136
+DGFFY+L K
Sbjct: 443 LVHDGFFYALLTK 455
>gi|422348844|ref|ZP_16429736.1| ribosomal RNA small subunit methyltransferase B [Sutterella
wadsworthensis 2_1_59BFAA]
gi|404658896|gb|EKB31758.1| ribosomal RNA small subunit methyltransferase B [Sutterella
wadsworthensis 2_1_59BFAA]
Length = 446
Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats.
Identities = 57/137 (41%), Positives = 76/137 (55%), Gaps = 26/137 (18%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ K FD IL D PCT SGVVRR PD PWLRR +DIKKL+ ++L LW +L+ GG+
Sbjct: 315 WWDGKPFDAILLDAPCTASGVVRRQPDTPWLRRPDDIKKLASEQKRLLKTLWPLLRKGGR 374
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRL-----NSPGQL---------------LPTV 120
+L+ TCS++ EE Q F D+ RL + G L LPTV
Sbjct: 375 MLYATCSIFPEEGTGQMKAFLAATPDA-RLVPLFAGNDGMLTLLPEESGEWRSDAQLPTV 433
Query: 121 NKKQDYDGFFYSLFQKR 137
+DGFFY+L +K+
Sbjct: 434 -----HDGFFYALLEKQ 445
>gi|149190437|ref|ZP_01868708.1| Sun protein [Vibrio shilonii AK1]
gi|148835691|gb|EDL52657.1| Sun protein [Vibrio shilonii AK1]
Length = 425
Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats.
Identities = 48/121 (39%), Positives = 81/121 (66%), Gaps = 8/121 (6%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+++ + FDRIL D PC+ +GV+RR+PDI WLRR +DI+ L++ +I + +W+ LK GG
Sbjct: 307 WWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIEALAELQREIFDAMWQQLKVGGT 366
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFYSLFQ 135
L++ TCS+ +E++EQ F ++ ++S PG Q+LP ++D DGF+Y++ +
Sbjct: 367 LVYATCSITPQENKEQVKAFLARTDNAQLIDSDIDNPGRQILP---GEEDMDGFYYAVLK 423
Query: 136 K 136
K
Sbjct: 424 K 424
>gi|442609884|ref|ZP_21024614.1| Ribosomal RNA small subunit methyltransferase B [Pseudoalteromonas
luteoviolacea B = ATCC 29581]
gi|441748604|emb|CCQ10676.1| Ribosomal RNA small subunit methyltransferase B [Pseudoalteromonas
luteoviolacea B = ATCC 29581]
Length = 428
Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats.
Identities = 51/127 (40%), Positives = 77/127 (60%), Gaps = 14/127 (11%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
+++ + FDRIL D+PC+ +GV+RR+PDI WLRR +DI++L+ KIL N+W +LKPGG
Sbjct: 306 QWWDQQQFDRILLDVPCSATGVIRRHPDIKWLRRASDIEELALLQAKILRNIWPLLKPGG 365
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSI--------RLNSPG-QLLPTVNKKQDYDGFF 130
L++ TCS+ +E+ Q F +D+ PG QLLP + DGF+
Sbjct: 366 TLIYATCSVLPQENHVQIQRFLTEFEDAQLSLLHEHDSYEKPGLQLLPGLT-----DGFY 420
Query: 131 YSLFQKR 137
Y+ K+
Sbjct: 421 YAKLIKK 427
>gi|386816647|ref|ZP_10103865.1| 16S rRNA m(5)C-967 methyltransferase [Thiothrix nivea DSM 5205]
gi|386421223|gb|EIJ35058.1| 16S rRNA m(5)C-967 methyltransferase [Thiothrix nivea DSM 5205]
Length = 432
Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats.
Identities = 53/126 (42%), Positives = 72/126 (57%), Gaps = 13/126 (10%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRIL D PC+ +GV+RR+PDI LRR +DI L + +LNNLW L+PGGK
Sbjct: 308 WWDGQPFDRILLDAPCSATGVIRRHPDIKVLRRDSDIAALQQEQAHLLNNLWPSLRPGGK 367
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPG----------QLLPTVNKKQDYDGFF 130
LL+VTCS+ EE+ Q F D+ L Q+LP +Q DGF+
Sbjct: 368 LLYVTCSILPEENIRQVETFLGKQADARHLPIEAGWGHTLAIGRQILP---GEQGMDGFY 424
Query: 131 YSLFQK 136
Y+L K
Sbjct: 425 YALLHK 430
>gi|227354905|ref|ZP_03839319.1| ribosomal RNA small subunit methyltransferase B [Proteus mirabilis
ATCC 29906]
gi|227164987|gb|EEI49826.1| ribosomal RNA small subunit methyltransferase B [Proteus mirabilis
ATCC 29906]
Length = 422
Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats.
Identities = 50/114 (43%), Positives = 73/114 (64%), Gaps = 4/114 (3%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
N FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++
Sbjct: 313 NMQFDRILLDAPCSATGVIRRHPDIKWLRRNEDIAQLAQIQKEILHAIWPYLKSGGTLVY 372
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
TCS+ EE+ +Q F + +D+ + + Q LP +K DGFFY+L K+
Sbjct: 373 ATCSILPEENSQQIAAFLSSMQDA-QCDYQHQCLP---EKYSGDGFFYALINKK 422
>gi|119475266|ref|ZP_01615619.1| sun protein [marine gamma proteobacterium HTCC2143]
gi|119451469|gb|EAW32702.1| sun protein [marine gamma proteobacterium HTCC2143]
Length = 434
Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats.
Identities = 53/143 (37%), Positives = 88/143 (61%), Gaps = 13/143 (9%)
Query: 5 EIESSDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYS 64
++++S + + ++ N+ FDRIL D PC+ +GV+RRNPDI R+ +DI +L+K
Sbjct: 294 QLKASLTHGDASEPLTWWDNQPFDRILLDAPCSATGVIRRNPDIKLHRQHSDIAQLAKLQ 353
Query: 65 CKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS--IRLNSP--------G 114
KILN LW LKP G+L++ TCS+ +E+E F + KD+ I +++P
Sbjct: 354 RKILNALWLTLKPNGRLVYATCSVLPDENEIIVGDFCEQQKDAKHIVIDAPWGIARPYGR 413
Query: 115 QLLPTVNKKQDYDGFFYSLFQKR 137
QLLP + + +DGF+Y++ +K+
Sbjct: 414 QLLP---QNEGHDGFYYAVIEKK 433
>gi|401765477|ref|YP_006580484.1| 16S rRNA methyltransferase B [Enterobacter cloacae subsp. cloacae
ENHKU01]
gi|400177011|gb|AFP71860.1| 16S rRNA methyltransferase B [Enterobacter cloacae subsp. cloacae
ENHKU01]
Length = 428
Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats.
Identities = 51/112 (45%), Positives = 71/112 (63%), Gaps = 9/112 (8%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DIK+L++ IL+ +W LKPGG L++ TC
Sbjct: 315 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIKELAQLQSDILDAIWPHLKPGGTLVYATC 374
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PGQL-LPTVNKKQDYDGFFYS 132
S+ EE+ +Q F K D+ ++ PGQ LP ++ DGFFY+
Sbjct: 375 SVLPEENSQQIAAFLKRTPDATLRDTGTPENPGQQNLPGA---EEGDGFFYA 423
>gi|253991652|ref|YP_003043008.1| ribosomal RNA small subunit methyltransferase B [Photorhabdus
asymbiotica]
gi|253783102|emb|CAQ86267.1| ribosomal RNA small subunit methyltransferase B [Photorhabdus
asymbiotica]
Length = 429
Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats.
Identities = 50/122 (40%), Positives = 75/122 (61%), Gaps = 11/122 (9%)
Query: 23 KNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLL 82
+N+ FDRIL D PC+ +GV+RR+PDI WLRR+ DI +L + +I++ +W LK GG L+
Sbjct: 312 ENQQFDRILLDAPCSATGVIRRHPDIKWLRREEDIAQLVQLQSEIIDAIWPYLKKGGTLV 371
Query: 83 FVTCSLWFEESEEQAIIFSKNHKDSIRLNSPG-------QLLPTVNKKQDYDGFFYSLFQ 135
+ TCS+ +E+ +Q F K H D+ L+ P Q++P + DGFFY+
Sbjct: 372 YATCSILPDENSQQINAFLKRHPDA-ELSGPDTREAPGKQIIPELTGG---DGFFYARLI 427
Query: 136 KR 137
KR
Sbjct: 428 KR 429
>gi|423122395|ref|ZP_17110079.1| ribosomal RNA small subunit methyltransferase B [Klebsiella oxytoca
10-5246]
gi|376392212|gb|EHT04877.1| ribosomal RNA small subunit methyltransferase B [Klebsiella oxytoca
10-5246]
Length = 431
Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats.
Identities = 56/135 (41%), Positives = 85/135 (62%), Gaps = 12/135 (8%)
Query: 13 KKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNN 70
K+ + R+ ++ +++ FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+
Sbjct: 300 KQGDGRYPAQWCEDEQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDA 359
Query: 71 LWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS-IRLN----SPG-QLLPTVNKKQ 124
+W LKPGG L++ TCS+ EE+ +Q F K D+ + L PG Q LP +
Sbjct: 360 IWPHLKPGGTLVYATCSILPEENSQQIAAFLKRTPDAELSLTGTPEQPGVQNLPGA---E 416
Query: 125 DYDGFFYS-LFQKRK 138
+ DGFFY+ L + RK
Sbjct: 417 EGDGFFYAKLIKHRK 431
>gi|377555715|ref|ZP_09785443.1| sun protein [endosymbiont of Bathymodiolus sp.]
Length = 413
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 76/122 (62%), Gaps = 6/122 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ ++FD+IL D PC+ +GV+RR+PDI LR+ DI L ILNNLW MLKPGG
Sbjct: 288 WWDGQHFDKILLDAPCSATGVIRRHPDIKLLRKPKDISALITLQKDILNNLWTMLKPGGT 347
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSI--RLNSPGQLLPTVNKKQ----DYDGFFYSLF 134
LL+ TCS+ E+E Q F +NH ++I ++ T K+Q ++DGF+Y++
Sbjct: 348 LLYATCSILKNENEVQIAQFLQNHSEAIEEKIILDWGFDTTHGKQQIPCYEFDGFYYAIL 407
Query: 135 QK 136
+K
Sbjct: 408 KK 409
>gi|297581922|ref|ZP_06943842.1| sun protein [Vibrio cholerae RC385]
gi|297533789|gb|EFH72630.1| sun protein [Vibrio cholerae RC385]
Length = 434
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 49/123 (39%), Positives = 80/123 (65%), Gaps = 8/123 (6%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
++++ + FDRIL D PC+ +GV+RR+PDI WLRR +DI L++ +IL+ +W+ LKPGG
Sbjct: 314 QWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREILDAMWQQLKPGG 373
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFYSLF 134
L++ TCS+ +E+ Q F + D+ + S PG Q+LP ++ DGF+Y++
Sbjct: 374 SLVYATCSITPQENLLQVKAFLERTPDARLVGSDPAQPGRQILP---GEEAMDGFYYAVL 430
Query: 135 QKR 137
K+
Sbjct: 431 SKQ 433
>gi|90413777|ref|ZP_01221765.1| Putative Sun protein [Photobacterium profundum 3TCK]
gi|90325246|gb|EAS41743.1| Putative Sun protein [Photobacterium profundum 3TCK]
Length = 431
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 50/127 (39%), Positives = 75/127 (59%), Gaps = 14/127 (11%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRIL D PC+ +GV+RR+PDI WLRR +DI+ L+ +I + +W LK GG
Sbjct: 307 WWHGEKFDRILLDAPCSATGVIRRHPDIKWLRRASDIEALAILQAEIFDAMWLQLKSGGT 366
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLN----------SPG-QLLPTVNKKQDYDGF 129
L++ TCS+ +E+ EQ F D+ +N PG Q+LP + D DGF
Sbjct: 367 LVYATCSITPQENSEQVKAFLARTADATLINRGQEADSDVEQPGRQILP---GESDMDGF 423
Query: 130 FYSLFQK 136
+Y++ QK
Sbjct: 424 YYAVLQK 430
>gi|381403015|ref|ZP_09927699.1| 16S rRNA methyltransferase B [Pantoea sp. Sc1]
gi|380736214|gb|EIB97277.1| 16S rRNA methyltransferase B [Pantoea sp. Sc1]
Length = 433
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 48/113 (42%), Positives = 71/113 (62%), Gaps = 5/113 (4%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
++ FDRIL D PC+ +GV+RR+PDI WLRR DI +L+K +IL+ +W LKPGG L++
Sbjct: 313 DRQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAKLQREILDAIWPHLKPGGTLIY 372
Query: 84 VTCSLWFEESEEQAIIFSKNHKDS----IRLNSPGQLLPTVNKKQDYDGFFYS 132
TCS+ EE+ +Q F + D+ +R ++P L + DGFFY+
Sbjct: 373 ATCSILPEENHQQIEAFLQRQHDAQAEPLR-DAPASGLQVFPDAEGGDGFFYA 424
>gi|429083006|ref|ZP_19146057.1| Ribosomal RNA small subunit methyltransferase B [Cronobacter
condimenti 1330]
gi|426548193|emb|CCJ72098.1| Ribosomal RNA small subunit methyltransferase B [Cronobacter
condimenti 1330]
Length = 431
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 52/117 (44%), Positives = 73/117 (62%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR +DI +L++ +IL+ +W+ LKPGG LL+ TC
Sbjct: 318 FDRILLDAPCSATGVIRRHPDIKWLRRDSDITELAQLQSEILDAIWQHLKPGGTLLYATC 377
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----RLNSPG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ EQ F + D+ +PG Q LP + DGFFY+ K+
Sbjct: 378 SVLPEENSEQIRAFLRRTPDAQLDGTGSAQTPGIQNLPGAIEG---DGFFYAKLIKK 431
>gi|254507306|ref|ZP_05119442.1| ribosomal RNA small subunit methyltransferase B [Vibrio
parahaemolyticus 16]
gi|219549766|gb|EED26755.1| ribosomal RNA small subunit methyltransferase B [Vibrio
parahaemolyticus 16]
Length = 426
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 48/122 (39%), Positives = 78/122 (63%), Gaps = 8/122 (6%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRIL D PC+ +GV+RR+PDI WLRR NDI L++ +I++ +W LK GG
Sbjct: 307 WWSGEKFDRILLDAPCSATGVIRRHPDIKWLRRANDIDALAELQSEIMDAMWGQLKAGGT 366
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSI----RLNSPG-QLLPTVNKKQDYDGFFYSLFQ 135
+++ TCS+ +E+ Q F + D+ +N+PG Q+LP ++D DGF+Y++
Sbjct: 367 MVYATCSITPKENVLQVKSFLERTSDATLVGSDINNPGRQILP---GEEDMDGFYYAVLV 423
Query: 136 KR 137
K+
Sbjct: 424 KQ 425
>gi|386389452|ref|ZP_10074267.1| ribosomal RNA small subunit methyltransferase B [Haemophilus
paraphrohaemolyticus HK411]
gi|385695547|gb|EIG26105.1| ribosomal RNA small subunit methyltransferase B [Haemophilus
paraphrohaemolyticus HK411]
Length = 433
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 54/122 (44%), Positives = 74/122 (60%), Gaps = 11/122 (9%)
Query: 23 KNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLL 82
K FDRIL D PC+ +GV+RR+PDI WLR++ DI +L+ KIL LW LKP G LL
Sbjct: 313 KGVMFDRILLDAPCSATGVIRRHPDIKWLRKEADITELASLQAKILEALWARLKPNGILL 372
Query: 83 FVTCSLWFEESEEQAIIFSKNHKD--SIRLNSPGQLLPTVNKKQDY------DGFFYSLF 134
+ TCS+ EE+ Q F +NH D S+ ++ G+ V +KQ + DGFFY+
Sbjct: 373 YATCSILPEENSLQIQRFLENHSDAESVEMDFHGE---KVTEKQFFPQPNGGDGFFYAKL 429
Query: 135 QK 136
+K
Sbjct: 430 RK 431
>gi|212554448|gb|ACJ26902.1| Fmu, rRNA SAM-dependent methyltransferase [Shewanella piezotolerans
WP3]
Length = 428
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 48/122 (39%), Positives = 72/122 (59%), Gaps = 6/122 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+++ FDRIL D PC+ +GV+RR+PDI WLR+ NDI++L+ KI ++ WK LKPGG
Sbjct: 306 WWQGDKFDRILLDAPCSATGVIRRHPDIKWLRKNNDIEELAALQSKIFDHCWKWLKPGGT 365
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPT------VNKKQDYDGFFYSLF 134
LL+ TCS+ +E+ +Q F D+ + Q P V + + DGF+Y+
Sbjct: 366 LLYATCSILPQENRDQVSAFLARTADATLMPIEEQTNPQDTGWQIVPGQDNMDGFYYARL 425
Query: 135 QK 136
K
Sbjct: 426 VK 427
>gi|157959859|ref|YP_001499893.1| sun protein [Shewanella pealeana ATCC 700345]
gi|157844859|gb|ABV85358.1| sun protein [Shewanella pealeana ATCC 700345]
Length = 426
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 48/122 (39%), Positives = 74/122 (60%), Gaps = 6/122 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+++ FDRIL D PC+ +GV+RR+PDI WLR+ NDI++L++ +I ++ WK LKPGG
Sbjct: 304 WWQGDKFDRILLDAPCSATGVIRRHPDIKWLRKNNDIEELAQLQSQIFDHCWKWLKPGGT 363
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLP------TVNKKQDYDGFFYSLF 134
LLF TCS+ +E+++Q F D+ + Q P V + + DGF+Y+
Sbjct: 364 LLFATCSILPQENKDQVSAFLARTPDATLVPIEEQANPDDIGWQIVPGQDNMDGFYYARL 423
Query: 135 QK 136
K
Sbjct: 424 VK 425
>gi|375129419|ref|YP_004991515.1| cytosine-C5-methylase [Vibrio furnissii NCTC 11218]
gi|315178589|gb|ADT85503.1| cytosine-C5-methylase [Vibrio furnissii NCTC 11218]
Length = 426
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 49/123 (39%), Positives = 79/123 (64%), Gaps = 8/123 (6%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
++++ FDRIL D PC+ +GV+RR+PDI WLRR DI L++ +IL+ +W+ LKPGG
Sbjct: 306 QWWQGGQFDRILLDAPCSATGVIRRHPDIKWLRRGEDIAALAELQREILDAMWQQLKPGG 365
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDS----IRLNSPG-QLLPTVNKKQDYDGFFYSLF 134
L++ TCS+ +E+ Q F ++ L++PG Q+LP ++D DGF+Y++
Sbjct: 366 TLVYATCSITPQENVLQVKDFLARTSNAQLVGSELDNPGRQILP---GEEDMDGFYYAVL 422
Query: 135 QKR 137
K+
Sbjct: 423 TKQ 425
>gi|260771086|ref|ZP_05880014.1| ribosomal RNA small subunit methyltransferase B [Vibrio furnissii
CIP 102972]
gi|260613975|gb|EEX39166.1| ribosomal RNA small subunit methyltransferase B [Vibrio furnissii
CIP 102972]
Length = 426
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 49/123 (39%), Positives = 79/123 (64%), Gaps = 8/123 (6%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
++++ FDRIL D PC+ +GV+RR+PDI WLRR DI L++ +IL+ +W+ LKPGG
Sbjct: 306 QWWQGGQFDRILLDAPCSATGVIRRHPDIKWLRRGEDIAALAELQREILDAMWQQLKPGG 365
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDS----IRLNSPG-QLLPTVNKKQDYDGFFYSLF 134
L++ TCS+ +E+ Q F ++ L++PG Q+LP ++D DGF+Y++
Sbjct: 366 TLVYATCSITPQENVLQVKDFLARTSNAQLVGSELDNPGRQILP---GEEDMDGFYYAVL 422
Query: 135 QKR 137
K+
Sbjct: 423 TKQ 425
>gi|54310619|ref|YP_131639.1| Sun protein [Photobacterium profundum SS9]
gi|46915062|emb|CAG21837.1| Putative Sun protein [Photobacterium profundum SS9]
Length = 431
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 50/127 (39%), Positives = 75/127 (59%), Gaps = 14/127 (11%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRIL D PC+ +GV+RR+PDI WLRR +DI+ L+ +I + +W LK GG
Sbjct: 307 WWHGEKFDRILLDAPCSATGVIRRHPDIKWLRRASDIEALAILQAEIFDAMWLQLKSGGT 366
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----------PG-QLLPTVNKKQDYDGF 129
L++ TCS+ +E+ EQ F D+ +N PG Q+LP + D DGF
Sbjct: 367 LVYATCSITPQENSEQVKAFLARTADATLINRGQEADSDMEHPGRQILP---GESDMDGF 423
Query: 130 FYSLFQK 136
+Y++ QK
Sbjct: 424 YYAVLQK 430
>gi|37681411|ref|NP_936020.1| sun protein [Vibrio vulnificus YJ016]
gi|320154882|ref|YP_004187261.1| ribosomal RNA small subunit methyltransferase B [Vibrio vulnificus
MO6-24/O]
gi|46396771|sp|Q7MGK4.1|RSMB_VIBVY RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|37200163|dbj|BAC95991.1| sun protein [Vibrio vulnificus YJ016]
gi|319930194|gb|ADV85058.1| ribosomal RNA small subunit methyltransferase B [Vibrio vulnificus
MO6-24/O]
Length = 426
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 50/126 (39%), Positives = 76/126 (60%), Gaps = 8/126 (6%)
Query: 17 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLK 76
N ++++ + FDRIL D PC+ +GV+RR+PDI WLRR DI L++ +I + +W LK
Sbjct: 303 NPEQWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRAEDITALAQLQSEIFDAMWAQLK 362
Query: 77 PGGKLLFVTCSLWFEESEEQAIIF-----SKNHKDSIRLNSPGQLLPTVNKKQDYDGFFY 131
PGG L++ TCS+ E+ EQ F + S R N Q+LP ++D DGF+Y
Sbjct: 363 PGGTLVYATCSITPMENVEQVKAFLARTPAAQLVGSERENPGRQILP---GEEDMDGFYY 419
Query: 132 SLFQKR 137
++ K+
Sbjct: 420 AVLVKQ 425
>gi|77166463|ref|YP_344988.1| rRNA SAM-dependent methyltransferase [Nitrosococcus oceani ATCC
19707]
gi|76884777|gb|ABA59458.1| 16S rRNA m(5)C-967 methyltransferase [Nitrosococcus oceani ATCC
19707]
Length = 403
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 74/118 (62%), Gaps = 7/118 (5%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+GSGV+RR+PDI LRR++DI L+ ++L+ LW +L PGG LL+ TC
Sbjct: 286 FDRILLDAPCSGSGVIRRHPDIKALRRESDILPLATLQKRLLSALWPLLAPGGMLLYCTC 345
Query: 87 SLWFEESEEQAIIFSKNHKDSIR--LNSPGQLLPTVNKK-----QDYDGFFYSLFQKR 137
S+ E+E+Q F H D L+ P LL T ++ ++ DGF+Y+ +KR
Sbjct: 346 SILPIENEQQIREFLLTHPDGQERPLDVPWGLLQTAGRQLLTGMEELDGFYYACLEKR 403
>gi|401679004|ref|ZP_10810952.1| 16S rRNA methyltransferase B [Enterobacter sp. SST3]
gi|400213724|gb|EJO44662.1| 16S rRNA methyltransferase B [Enterobacter sp. SST3]
Length = 420
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 50/112 (44%), Positives = 71/112 (63%), Gaps = 9/112 (8%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ IL+ +W+ LKPGG L++ TC
Sbjct: 307 FDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSDILDAIWQHLKPGGTLVYATC 366
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PGQL-LPTVNKKQDYDGFFYS 132
S+ EE+ +Q F K D+ ++ PGQ LP ++ DGFFY+
Sbjct: 367 SVLPEENSQQIAAFLKRTPDAALHDTGTPECPGQQNLPGA---EEGDGFFYA 415
>gi|421348925|ref|ZP_15799296.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HE-25]
gi|395957118|gb|EJH67703.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
HE-25]
Length = 426
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 49/123 (39%), Positives = 80/123 (65%), Gaps = 8/123 (6%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
++++ + FDRIL D PC+ +GV+RR+PDI WLRR +DI L++ +IL+ +W+ LKPGG
Sbjct: 306 QWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREILDAMWQQLKPGG 365
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFYSLF 134
L++ TCS+ +E+ Q F + D+ + S PG Q+LP ++ DGF+Y++
Sbjct: 366 SLVYATCSITPQENCLQVKAFLERTPDARLVGSDPAQPGRQILP---GEEAMDGFYYAVL 422
Query: 135 QKR 137
K+
Sbjct: 423 SKQ 425
>gi|395004334|ref|ZP_10388399.1| ribosomal RNA small subunit methyltransferase RsmB [Acidovorax sp.
CF316]
gi|394317745|gb|EJE54243.1| ribosomal RNA small subunit methyltransferase RsmB [Acidovorax sp.
CF316]
Length = 477
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 55/119 (46%), Positives = 75/119 (63%), Gaps = 9/119 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FD IL D PCT SG+VRR+PD+ WLRR+ DI +L+ ++L LW +L PGG+LL+ TC
Sbjct: 356 FDAILLDAPCTASGIVRRHPDVRWLRRETDIAQLATLQKQLLAALWPLLAPGGRLLYCTC 415
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQ---------DYDGFFYSLFQK 136
S++ E + Q F ++ D+ L SPG L+P KQ D+DGFFY+L QK
Sbjct: 416 SVFRAEGDAQVQTFLAHNTDAHLLPSPGHLIPRAADKQGAVPDNRFGDHDGFFYALLQK 474
>gi|372267037|ref|ZP_09503085.1| sun protein [Alteromonas sp. S89]
Length = 435
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 53/128 (41%), Positives = 74/128 (57%), Gaps = 19/128 (14%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RRNPDI LRR DI++L+ KIL +W++LKPGG LL+ TC
Sbjct: 312 FDRILLDAPCSATGVIRRNPDIKLLRRPEDIQELAALQGKILRAMWRLLKPGGTLLYATC 371
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPG---------------QLLPTVNKKQDYDGFFY 131
S+ EE+ Q F D+ R N+P QLLP ++ DGF+Y
Sbjct: 372 SILPEENSAQVARFVAETPDA-RDNTPQLLHGEPWGLPQEVGMQLLPGLHAG---DGFYY 427
Query: 132 SLFQKRKE 139
+ +K+ +
Sbjct: 428 AKLEKQAQ 435
>gi|269103777|ref|ZP_06156474.1| ribosomal RNA small subunit methyltransferase B [Photobacterium
damselae subsp. damselae CIP 102761]
gi|268163675|gb|EEZ42171.1| ribosomal RNA small subunit methyltransferase B [Photobacterium
damselae subsp. damselae CIP 102761]
Length = 308
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 75/122 (61%), Gaps = 8/122 (6%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
+++ FDRIL D PC+ +GV+RR+PDI WLRR DI L++ +I + +W LK GG
Sbjct: 189 KWWDGDKFDRILLDAPCSATGVIRRHPDIKWLRRGEDIAALAQLQAEIFDAMWLQLKSGG 248
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFYSLF 134
L++ TCS+ +E+ +Q F D+ + S PG Q+LP +++ DGF+Y++
Sbjct: 249 TLVYATCSITPQENRDQVSAFLTRTADATLVGSEATNPGRQILP---GEENMDGFYYAVL 305
Query: 135 QK 136
QK
Sbjct: 306 QK 307
>gi|257091709|ref|YP_003165350.1| sun protein [Candidatus Accumulibacter phosphatis clade IIA str.
UW-1]
gi|257044233|gb|ACV33421.1| sun protein [Candidatus Accumulibacter phosphatis clade IIA str.
UW-1]
Length = 442
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 51/110 (46%), Positives = 77/110 (70%), Gaps = 5/110 (4%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FD ILAD+PC+ SGVVRR+PDI +LRR++DI++ + +L+ LW +LKPGG+LL+ TC
Sbjct: 336 FDAILADVPCSASGVVRRHPDIKYLRRESDIRRFALLQADLLDQLWPLLKPGGRLLYATC 395
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
S++ EE+E Q F + RL +LLP ++++DGF+Y+L +K
Sbjct: 396 SVFPEENEGQIDAFLVRQPTARRLVEE-RLLP----REEHDGFYYALLRK 440
>gi|238792967|ref|ZP_04636597.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
intermedia ATCC 29909]
gi|238727821|gb|EEQ19345.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
intermedia ATCC 29909]
Length = 429
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 50/120 (41%), Positives = 74/120 (61%), Gaps = 9/120 (7%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
++ FDRIL D PC+ +GV+RR+PDI WLRR +DI L+ +I+ +W LK GG +++
Sbjct: 313 DQQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIADLAALQSEIIEAIWPRLKKGGVMVY 372
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
TCS+ EE+++Q F + H D+ + + PG Q LP +D DGFFY+ KR
Sbjct: 373 ATCSILPEENQQQIAAFLQRHSDAELVETGTNTAPGKQNLP---HPEDGDGFFYAKLFKR 429
>gi|296104996|ref|YP_003615142.1| 16S rRNA methyltransferase B [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|295059455|gb|ADF64193.1| 16S rRNA methyltransferase B [Enterobacter cloacae subsp. cloacae
ATCC 13047]
Length = 438
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 51/112 (45%), Positives = 71/112 (63%), Gaps = 9/112 (8%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DIK+L++ +IL+ +W LKPGG L++ TC
Sbjct: 325 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIKELAQLQSEILDAIWPHLKPGGTLVYATC 384
Query: 87 SLWFEESEEQAIIFSKNH-----KDSIRLNSPGQL-LPTVNKKQDYDGFFYS 132
S+ EE+ +Q F K +D+ PGQ LP ++ DGFFY+
Sbjct: 385 SILPEENSQQISAFLKRTPGATLRDTGTPEHPGQQNLPGA---EEGDGFFYA 433
>gi|126172286|ref|YP_001048435.1| sun protein [Shewanella baltica OS155]
gi|386338963|ref|YP_006035329.1| sun protein [Shewanella baltica OS117]
gi|125995491|gb|ABN59566.1| sun protein [Shewanella baltica OS155]
gi|334861364|gb|AEH11835.1| sun protein [Shewanella baltica OS117]
Length = 428
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 49/122 (40%), Positives = 77/122 (63%), Gaps = 6/122 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+++ FDRIL D PC+ +GV+RR+PDI WLR+ +DI++L++ +IL++ WK LKPGG
Sbjct: 304 WWQGGQFDRILLDAPCSATGVIRRHPDIKWLRKNHDIEELAELQQQILDHCWKWLKPGGT 363
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDS-----IRLNSPGQLLPTVNKKQD-YDGFFYSLF 134
LL+ TCS+ +E+ +Q F + D+ + NSP + + QD DGF+Y+
Sbjct: 364 LLYATCSILPQENRDQISAFLERTADAKLDTLSQQNSPQDIGWQITPGQDNMDGFYYARL 423
Query: 135 QK 136
K
Sbjct: 424 LK 425
>gi|429098214|ref|ZP_19160320.1| Ribosomal RNA small subunit methyltransferase B [Cronobacter
dublinensis 582]
gi|426284554|emb|CCJ86433.1| Ribosomal RNA small subunit methyltransferase B [Cronobacter
dublinensis 582]
Length = 462
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 52/117 (44%), Positives = 71/117 (60%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR +DI +L++ +IL+ +W LKPGG LL+ TC
Sbjct: 349 FDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELAQLQSEILDAIWPHLKPGGTLLYATC 408
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----RLNSPG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ EQ F D+ +PG Q LP + DGFFY+ K+
Sbjct: 409 SILPEENSEQIRAFLARTPDAQLDGTGSAQTPGIQNLPGATEG---DGFFYAKLIKK 462
>gi|238783195|ref|ZP_04627221.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
bercovieri ATCC 43970]
gi|238715991|gb|EEQ07977.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
bercovieri ATCC 43970]
Length = 431
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 49/120 (40%), Positives = 76/120 (63%), Gaps = 9/120 (7%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
++ FDRIL D PC+ +GV+RR+PDI WLRR +DI +L++ +I+ +W LK GG +++
Sbjct: 313 DQQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELAQLQSEIIEAIWPKLKKGGVMVY 372
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
TCS+ EE+++Q F + H ++ + + PG Q LP +D DGFFY+ KR
Sbjct: 373 ATCSILPEENQQQIAAFLQRHSEAELVETGTTAAPGKQNLP---HPEDGDGFFYAKLIKR 429
>gi|429117065|ref|ZP_19177983.1| Ribosomal RNA small subunit methyltransferase B [Cronobacter
sakazakii 701]
gi|426320194|emb|CCK04096.1| Ribosomal RNA small subunit methyltransferase B [Cronobacter
sakazakii 701]
Length = 431
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 52/117 (44%), Positives = 71/117 (60%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR +DI +L++ +IL+ +W LKPGG LL+ TC
Sbjct: 318 FDRILLDAPCSATGVIRRHPDIKWLRRDSDINELAQLQSEILDAIWPHLKPGGTLLYATC 377
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----RLNSPG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ EQ F D+ +PG Q LP + DGFFY+ K+
Sbjct: 378 SVLPEENSEQIRAFLSRTPDAQLDGTGSTQTPGIQNLPGATEG---DGFFYAKLIKK 431
>gi|238752659|ref|ZP_04614130.1| Ribosomal RNA small subunit methyltransferase B [Yersinia rohdei
ATCC 43380]
gi|238709086|gb|EEQ01333.1| Ribosomal RNA small subunit methyltransferase B [Yersinia rohdei
ATCC 43380]
Length = 429
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 48/115 (41%), Positives = 75/115 (65%), Gaps = 9/115 (7%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
N+ FDRIL D PC+ +GV+RR+PDI WLRR +DI +L++ +I+ +W LK GG +++
Sbjct: 313 NQQFDRILLDAPCSATGVIRRHPDIKWLRRNSDIAELAQLQSEIIEAIWPKLKKGGVMVY 372
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSIRL-----NSPG-QLLPTVNKKQDYDGFFYS 132
TCS+ EE+++Q F + H ++ + ++PG Q LP +D DGFFY+
Sbjct: 373 ATCSILPEENQQQIAAFLQRHSEAELVETGTTSAPGRQNLP---HPEDGDGFFYA 424
>gi|217971245|ref|YP_002355996.1| sun protein [Shewanella baltica OS223]
gi|217496380|gb|ACK44573.1| sun protein [Shewanella baltica OS223]
Length = 428
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 49/122 (40%), Positives = 77/122 (63%), Gaps = 6/122 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+++ FDRIL D PC+ +GV+RR+PDI WLR+ +DI++L++ +IL++ WK LKPGG
Sbjct: 304 WWQGGQFDRILLDAPCSATGVIRRHPDIKWLRKNHDIEELAELQQQILDHCWKWLKPGGT 363
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDS-----IRLNSPGQLLPTVNKKQD-YDGFFYSLF 134
LL+ TCS+ +E+ +Q F + D+ + NSP + + QD DGF+Y+
Sbjct: 364 LLYATCSILPQENRDQISAFLERTADAKLDKLSQQNSPQDIGWQITPGQDNMDGFYYARL 423
Query: 135 QK 136
K
Sbjct: 424 LK 425
>gi|160873155|ref|YP_001552471.1| sun protein [Shewanella baltica OS195]
gi|378706391|ref|YP_005271285.1| sun protein [Shewanella baltica OS678]
gi|418022970|ref|ZP_12661956.1| sun protein [Shewanella baltica OS625]
gi|160858677|gb|ABX47211.1| sun protein [Shewanella baltica OS195]
gi|315265380|gb|ADT92233.1| sun protein [Shewanella baltica OS678]
gi|353537972|gb|EHC07528.1| sun protein [Shewanella baltica OS625]
Length = 428
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 49/122 (40%), Positives = 77/122 (63%), Gaps = 6/122 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+++ FDRIL D PC+ +GV+RR+PDI WLR+ +DI++L++ +IL++ WK LKPGG
Sbjct: 304 WWQGGQFDRILLDAPCSATGVIRRHPDIKWLRKNHDIEELAELQQQILDHCWKWLKPGGT 363
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDS-----IRLNSPGQLLPTVNKKQD-YDGFFYSLF 134
LL+ TCS+ +E+ +Q F + D+ + NSP + + QD DGF+Y+
Sbjct: 364 LLYATCSILPQENRDQISAFLERTADAKLDTLSQQNSPQDIGWQITPGQDNMDGFYYARL 423
Query: 135 QK 136
K
Sbjct: 424 LK 425
>gi|344339700|ref|ZP_08770628.1| sun protein [Thiocapsa marina 5811]
gi|343800436|gb|EGV18382.1| sun protein [Thiocapsa marina 5811]
Length = 460
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 50/125 (40%), Positives = 75/125 (60%), Gaps = 13/125 (10%)
Query: 22 YKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKL 81
+ K FDRIL D+PC+ +GV+RR+PDI WLRR +DI L +IL+ W +L PGG+L
Sbjct: 336 WSAKPFDRILLDVPCSATGVIRRHPDIKWLRRDSDIPALCALQDRILDAAWPLLAPGGRL 395
Query: 82 LFVTCSLWFEESEEQAIIFSKNHKDSIR--LNSPG--------QLLPTVNKKQDYDGFFY 131
L+ TCSL +E++ + F + H D+ + PG QLLP + DGF++
Sbjct: 396 LYATCSLIADENQHRIAAFLERHPDARECPIAVPGSRALSHGIQLLP---RDGANDGFYF 452
Query: 132 SLFQK 136
+L ++
Sbjct: 453 ALIER 457
>gi|387772919|ref|ZP_10128523.1| ribosomal RNA small subunit methyltransferase B [Haemophilus
parahaemolyticus HK385]
gi|386906012|gb|EIJ70761.1| ribosomal RNA small subunit methyltransferase B [Haemophilus
parahaemolyticus HK385]
Length = 439
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 53/122 (43%), Positives = 74/122 (60%), Gaps = 11/122 (9%)
Query: 23 KNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLL 82
K FDRIL D PC+ +GV+RR+PDI WLR++ DI +L+ KIL LW LKP G LL
Sbjct: 319 KGVMFDRILLDAPCSATGVIRRHPDIKWLRKEADITELANLQAKILEALWARLKPNGILL 378
Query: 83 FVTCSLWFEESEEQAIIFSKNHKD--SIRLNSPGQLLPTVNKKQDY------DGFFYSLF 134
+ TCS+ EE+ Q F +NH D ++ ++ G+ V +KQ + DGFFY+
Sbjct: 379 YATCSILPEENSLQIQRFLENHSDAEAVEMDFHGE---KVTEKQFFPQPNGGDGFFYAKL 435
Query: 135 QK 136
+K
Sbjct: 436 KK 437
>gi|319761189|ref|YP_004125126.1| sun protein [Alicycliphilus denitrificans BC]
gi|330823049|ref|YP_004386352.1| sun protein [Alicycliphilus denitrificans K601]
gi|317115750|gb|ADU98238.1| sun protein [Alicycliphilus denitrificans BC]
gi|329308421|gb|AEB82836.1| sun protein [Alicycliphilus denitrificans K601]
Length = 455
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 51/119 (42%), Positives = 74/119 (62%), Gaps = 9/119 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FD IL D PCT SG+VRR+PD+ WLRR++D+ +L+ ++L LW +LKPGG++L+ TC
Sbjct: 335 FDAILLDAPCTASGIVRRHPDVRWLRRESDVAQLAALQARLLAALWPLLKPGGRMLYCTC 394
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQ---------DYDGFFYSLFQK 136
S++ E + Q F ++ D+ L S G L P K ++DGFFY+L QK
Sbjct: 395 SVFRAEGDAQIQAFLAHNTDARLLPSAGHLFPGSPDKHGALRDNGPGEHDGFFYALLQK 453
>gi|238797213|ref|ZP_04640714.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
mollaretii ATCC 43969]
gi|238718850|gb|EEQ10665.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
mollaretii ATCC 43969]
Length = 431
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 45/117 (38%), Positives = 73/117 (62%), Gaps = 3/117 (2%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
++ FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +I+ +W LK GG +++
Sbjct: 313 DQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQSEIIEAIWPKLKKGGVMVY 372
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLP---TVNKKQDYDGFFYSLFQKR 137
TCS+ EE+++Q F + H ++ + + +P + +D DGFFY+ KR
Sbjct: 373 ATCSILPEENQQQIAAFLQRHSEAELVETGTTAVPGKQNLPHPEDGDGFFYAKLIKR 429
>gi|421080414|ref|ZP_15541347.1| Ribosomal RNA small subunit methyltransferase B [Pectobacterium
wasabiae CFBP 3304]
gi|401704846|gb|EJS95036.1| Ribosomal RNA small subunit methyltransferase B [Pectobacterium
wasabiae CFBP 3304]
Length = 429
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 48/120 (40%), Positives = 74/120 (61%), Gaps = 9/120 (7%)
Query: 23 KNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLL 82
+ + FDRIL D PC+ +GV+RR+PDI WLRR DI++L +I++ +W LKPGG ++
Sbjct: 312 EGRMFDRILLDAPCSATGVIRRHPDIKWLRRDRDIEELVALQKEIIDAIWPHLKPGGTMV 371
Query: 83 FVTCSLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQK 136
+ TCS+ +E+ +Q F H D+ +++ PG Q+LP + DGFFY+ K
Sbjct: 372 YATCSILPQENAQQVTDFLSRHADATLVDTGTSEIPGIQMLPHADGG---DGFFYAKLVK 428
>gi|311277757|ref|YP_003939988.1| sun protein [Enterobacter cloacae SCF1]
gi|308746952|gb|ADO46704.1| sun protein [Enterobacter cloacae SCF1]
Length = 429
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 52/119 (43%), Positives = 72/119 (60%), Gaps = 9/119 (7%)
Query: 25 KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 84
+ FDRIL D PC+ +GV+RR+ DI WLRR DI +L+ +IL+ +W LKPGG L++
Sbjct: 314 RQFDRILLDAPCSATGVIRRHSDIKWLRRDRDIAELALLQAQILDAVWPHLKPGGTLVYA 373
Query: 85 TCSLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
TCS+ EE+ EQ F K D++ + PG Q LP ++ DGFFY+ KR
Sbjct: 374 TCSILPEENAEQIAAFLKRTGDAVLSETGTPEQPGLQNLPAADEG---DGFFYAKLIKR 429
>gi|398800925|ref|ZP_10560185.1| ribosomal RNA small subunit methyltransferase RsmB [Pantoea sp.
GM01]
gi|398093742|gb|EJL84117.1| ribosomal RNA small subunit methyltransferase RsmB [Pantoea sp.
GM01]
Length = 428
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 69/117 (58%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L+ +IL +W LK GG +++ TC
Sbjct: 315 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAILQREILEAVWPHLKSGGTMIYATC 374
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPG------QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ +Q F H D++ P Q+ PTV+ DGFFY+ K+
Sbjct: 375 SILPEENHQQISTFLAAHSDAVAETLPQGQANGWQVFPTVDGG---DGFFYAKLMKK 428
>gi|386311814|ref|YP_006007979.1| sun protein [Shewanella putrefaciens 200]
gi|319424439|gb|ADV52513.1| sun protein [Shewanella putrefaciens 200]
Length = 429
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 51/132 (38%), Positives = 79/132 (59%), Gaps = 6/132 (4%)
Query: 11 INKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNN 70
I+ N +++ FDRIL D PC+ +GV+RR+PDI WLR+ +DI++L++ +IL++
Sbjct: 294 IHSDAANIGSWWQGGLFDRILLDAPCSATGVIRRHPDIKWLRKNHDIEELAELQQQILDH 353
Query: 71 LWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS-----IRLNSPGQLLPTVNKKQD 125
WK LKPGG LL+ TCS+ +E+ +Q F D+ + NSP + + QD
Sbjct: 354 CWKWLKPGGTLLYATCSILPQENRDQISAFLDRTVDAKLDILAQQNSPQDIGWQITPGQD 413
Query: 126 -YDGFFYSLFQK 136
DGF+Y+ K
Sbjct: 414 NMDGFYYARLLK 425
>gi|374851128|dbj|BAL54097.1| ribosomal RNA small subunit methyltransferase B [uncultured gamma
proteobacterium]
Length = 431
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 52/126 (41%), Positives = 77/126 (61%), Gaps = 13/126 (10%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ ++F+RIL D PCT SGVVRR+PDI LRR++D+ L+ +IL +W +L GG+
Sbjct: 308 WWDGRHFERILVDAPCTASGVVRRHPDIKLLRRESDVAALAARQREILTAVWPLLARGGR 367
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKD--SIRLNSP--------GQLLPTVNKKQDYDGFF 130
LL+ TCSL EE+E Q F H D ++ +++ Q+LP +QD DGFF
Sbjct: 368 LLYATCSLLPEENEAQIRAFLAEHPDARAVPIHAAWGQVTGWGRQILP---GEQDMDGFF 424
Query: 131 YSLFQK 136
Y+ +K
Sbjct: 425 YACLEK 430
>gi|237728623|ref|ZP_04559104.1| 16S rRNA m5C967 methyltransferase [Citrobacter sp. 30_2]
gi|226909245|gb|EEH95163.1| 16S rRNA m5C967 methyltransferase [Citrobacter sp. 30_2]
Length = 439
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 51/117 (43%), Positives = 71/117 (60%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +ILN W LK GG L++ TC
Sbjct: 326 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILNATWSHLKSGGTLVYATC 385
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+++Q F D++ + PG Q LP +D DGFFY+ K+
Sbjct: 386 SILPEENQQQIAAFLARTPDAVLSETGTPEKPGRQNLPGA---EDGDGFFYAKLIKK 439
>gi|417792980|ref|ZP_12440279.1| 16S rRNA methyltransferase B [Cronobacter sakazakii E899]
gi|449306568|ref|YP_007438924.1| 16S rRNA methyltransferase B [Cronobacter sakazakii SP291]
gi|333952958|gb|EGL70961.1| 16S rRNA methyltransferase B [Cronobacter sakazakii E899]
gi|449096601|gb|AGE84635.1| 16S rRNA methyltransferase B [Cronobacter sakazakii SP291]
Length = 429
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 52/117 (44%), Positives = 71/117 (60%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR +DI +L++ +IL+ +W LKPGG LL+ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDSDINELAQLQSEILDAIWPHLKPGGTLLYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----RLNSPG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ EQ F D+ +PG Q LP + DGFFY+ K+
Sbjct: 376 SVLPEENSEQIRAFLSRTPDAQLDGTGSTQTPGIQNLPGATEG---DGFFYAKLIKK 429
>gi|156932266|ref|YP_001436182.1| 16S rRNA methyltransferase B [Cronobacter sakazakii ATCC BAA-894]
gi|224493253|sp|A7MPE7.1|RSMB_ENTS8 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|156530520|gb|ABU75346.1| hypothetical protein ESA_00037 [Cronobacter sakazakii ATCC BAA-894]
Length = 429
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 52/117 (44%), Positives = 71/117 (60%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR +DI +L++ +IL+ +W LKPGG LL+ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDSDINELAQLQSEILDAIWPHLKPGGTLLYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----RLNSPG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ EQ F D+ +PG Q LP + DGFFY+ K+
Sbjct: 376 SVLPEENSEQIRAFLSRTPDAQLDGTGSTQTPGIQNLPGATEG---DGFFYAKLIKK 429
>gi|429121508|ref|ZP_19182129.1| Ribosomal RNA small subunit methyltransferase B [Cronobacter
sakazakii 680]
gi|426323981|emb|CCK12866.1| Ribosomal RNA small subunit methyltransferase B [Cronobacter
sakazakii 680]
Length = 431
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 52/117 (44%), Positives = 71/117 (60%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR +DI +L++ +IL+ +W LKPGG LL+ TC
Sbjct: 318 FDRILLDAPCSATGVIRRHPDIKWLRRDSDIGELAQLQSEILDAIWPHLKPGGTLLYATC 377
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----RLNSPG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ EQ F D+ +PG Q LP + DGFFY+ K+
Sbjct: 378 SVLPEENSEQIRAFLSRTPDAQLDGTGSTQTPGIQNLPGATEG---DGFFYAKLIKK 431
>gi|225024416|ref|ZP_03713608.1| hypothetical protein EIKCOROL_01291 [Eikenella corrodens ATCC
23834]
gi|224942797|gb|EEG24006.1| hypothetical protein EIKCOROL_01291 [Eikenella corrodens ATCC
23834]
Length = 419
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 50/115 (43%), Positives = 68/115 (59%), Gaps = 5/115 (4%)
Query: 22 YKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKL 81
Y F+ +LAD+PCT SGV R+PDI WLRR D K + +L+ LW+ LKPGG++
Sbjct: 308 YDGLLFNAVLADVPCTASGVACRHPDIKWLRRPQDAKNTAAQQTDLLDALWRTLKPGGRM 367
Query: 82 LFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
L TCSL+ EE+ Q F + H D+ S LLP ++ DGF+Y+L K
Sbjct: 368 LLSTCSLFTEENGSQLQAFLQRHPDAACTRSE-TLLPNPHQ----DGFYYALIHK 417
>gi|157372746|ref|YP_001480735.1| 16S rRNA methyltransferase B [Serratia proteamaculans 568]
gi|224493268|sp|A8GKG7.1|RSMB_SERP5 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|157324510|gb|ABV43607.1| sun protein [Serratia proteamaculans 568]
Length = 429
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 46/112 (41%), Positives = 69/112 (61%), Gaps = 3/112 (2%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
+K FDRIL D PC+ +GV+RR+PDI WLRR +DI +L+ +I+ +W LK GG +++
Sbjct: 313 DKQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELAALQAEIIEAIWPHLKSGGVMVY 372
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLP---TVNKKQDYDGFFYS 132
TCS+ E+ EQ F + H D+ + + Q P + +D DGFFY+
Sbjct: 373 ATCSILPAENAEQVSAFLQRHADARLVETGNQQQPGRQNLPHPEDGDGFFYA 424
>gi|336450419|ref|ZP_08620870.1| ribosomal RNA small subunit methyltransferase RsmB [Idiomarina sp.
A28L]
gi|336282814|gb|EGN76035.1| ribosomal RNA small subunit methyltransferase RsmB [Idiomarina sp.
A28L]
Length = 458
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 56/150 (37%), Positives = 83/150 (55%), Gaps = 28/150 (18%)
Query: 17 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLK 76
N ++ + FDRIL D PC+ +GV+RR+PDI WLRR +DI L + +IL+ W++LK
Sbjct: 309 NPEEWWDGQLFDRILLDAPCSATGVIRRHPDIKWLRRADDIDALVELQSRILSAQWQLLK 368
Query: 77 PGGKLLFVTCSLWFEES--EEQAIIFSKNHKDSIRL--------------NSPG---QLL 117
PGG+LL+ TCS+ EE+ + Q+ + + + ++I + NS QLL
Sbjct: 369 PGGRLLYATCSVLPEENILQIQSFLATVDDAEAIAIPIEKDTVGGAEALDNSASAGWQLL 428
Query: 118 P---------TVNKKQDYDGFFYSLFQKRK 138
P + + DGFFY L QKRK
Sbjct: 429 PGAADTKSTGSTGSTEGGDGFFYFLLQKRK 458
>gi|261823202|ref|YP_003261308.1| 16S rRNA methyltransferase B [Pectobacterium wasabiae WPP163]
gi|261607215|gb|ACX89701.1| sun protein [Pectobacterium wasabiae WPP163]
Length = 429
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 48/118 (40%), Positives = 73/118 (61%), Gaps = 9/118 (7%)
Query: 25 KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 84
+ FDRIL D PC+ +GV+RR+PDI WLRR DI++L +I++ +W LKPGG +++
Sbjct: 314 RMFDRILLDAPCSATGVIRRHPDIKWLRRDRDIEELVALQKEIIDAIWPHLKPGGTMVYA 373
Query: 85 TCSLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQK 136
TCS+ +E+ +Q F H D+ +++ PG Q+LP + DGFFY+ K
Sbjct: 374 TCSILPQENAQQVTDFLSRHADATLVDTGTSEIPGIQMLPHADGG---DGFFYAKLVK 428
>gi|420260316|ref|ZP_14762999.1| 16S rRNA methyltransferase B [Yersinia enterocolitica subsp.
enterocolitica WA-314]
gi|404512132|gb|EKA25984.1| 16S rRNA methyltransferase B [Yersinia enterocolitica subsp.
enterocolitica WA-314]
Length = 429
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 48/120 (40%), Positives = 77/120 (64%), Gaps = 9/120 (7%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
++ FDRIL D PC+ +GV+RR+PDI WLRR +DI +L++ +I+ +W LK GG +++
Sbjct: 313 DQQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELAQLQSEIIEAIWPKLKKGGVMVY 372
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSI-----RLNSPG-QLLPTVNKKQDYDGFFYSLFQKR 137
TCS+ EE+++Q F + H ++ +++PG Q LP +D DGF+Y+ KR
Sbjct: 373 ATCSILPEENQQQIATFLQRHSEADLVETGTVSAPGRQNLP---HPEDGDGFYYAKLIKR 429
>gi|378765423|ref|YP_005193882.1| ribosomal RNA small subunit methyltransferase B [Pantoea ananatis
LMG 5342]
gi|365184895|emb|CCF07845.1| ribosomal RNA small subunit methyltransferase B [Pantoea ananatis
LMG 5342]
Length = 433
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 48/119 (40%), Positives = 73/119 (61%), Gaps = 9/119 (7%)
Query: 25 KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 84
+ FDRIL D PC+ +GV+RR+PDI WLRR DI +L+ +IL+ W +LKPGG +++
Sbjct: 314 RQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAALQREILDATWPLLKPGGTMIYA 373
Query: 85 TCSLWFEESEEQAIIFSKNHKDSIRLNSPG------QLLPTVNKKQDYDGFFYSLFQKR 137
TCS+ +E++ Q F + H D+ ++ G Q+ P + + DGFFY+ KR
Sbjct: 374 TCSVLPDENQRQISEFIERHADAEAVSLSGAPLNGWQVFP---EAEGGDGFFYAKLVKR 429
>gi|386077676|ref|YP_005991201.1| ribosomal RNA small subunit methyltransferase B RsmB [Pantoea
ananatis PA13]
gi|354986857|gb|AER30981.1| ribosomal RNA small subunit methyltransferase B RsmB [Pantoea
ananatis PA13]
Length = 433
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 48/119 (40%), Positives = 73/119 (61%), Gaps = 9/119 (7%)
Query: 25 KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 84
+ FDRIL D PC+ +GV+RR+PDI WLRR DI +L+ +IL+ W +LKPGG +++
Sbjct: 314 RQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAALQREILDATWPLLKPGGTMIYA 373
Query: 85 TCSLWFEESEEQAIIFSKNHKDSIRLNSPG------QLLPTVNKKQDYDGFFYSLFQKR 137
TCS+ +E++ Q F + H D+ ++ G Q+ P + + DGFFY+ KR
Sbjct: 374 TCSVLPDENQRQISEFIERHADAEAVSLSGAPLNGWQVFP---EAEGGDGFFYAKLVKR 429
>gi|386017393|ref|YP_005935691.1| ribosomal RNA small subunit methyltransferase B RsmB [Pantoea
ananatis AJ13355]
gi|327395473|dbj|BAK12895.1| ribosomal RNA small subunit methyltransferase B RsmB [Pantoea
ananatis AJ13355]
Length = 433
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 48/119 (40%), Positives = 73/119 (61%), Gaps = 9/119 (7%)
Query: 25 KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 84
+ FDRIL D PC+ +GV+RR+PDI WLRR DI +L+ +IL+ W +LKPGG +++
Sbjct: 314 RQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAALQREILDATWPLLKPGGTMIYA 373
Query: 85 TCSLWFEESEEQAIIFSKNHKDSIRLNSPG------QLLPTVNKKQDYDGFFYSLFQKR 137
TCS+ +E++ Q F + H D+ ++ G Q+ P + + DGFFY+ KR
Sbjct: 374 TCSVLPDENQRQISEFIERHADAEAVSLSGAPLNGWQVFP---EAEGGDGFFYAKLVKR 429
>gi|332163229|ref|YP_004299806.1| 16S rRNA methyltransferase B [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|386310764|ref|YP_006006820.1| ribosomal RNA small subunit methyltransferase B [Yersinia
enterocolitica subsp. palearctica Y11]
gi|418243715|ref|ZP_12870175.1| 16S rRNA methyltransferase B [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|433549200|ref|ZP_20505246.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
enterocolitica IP 10393]
gi|318607711|emb|CBY29209.1| ribosomal RNA small subunit methyltransferase B [Yersinia
enterocolitica subsp. palearctica Y11]
gi|325667459|gb|ADZ44103.1| 16S rRNA methyltransferase B [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|351776783|gb|EHB19069.1| 16S rRNA methyltransferase B [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|431790241|emb|CCO68286.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
enterocolitica IP 10393]
Length = 429
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 48/120 (40%), Positives = 77/120 (64%), Gaps = 9/120 (7%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
++ FDRIL D PC+ +GV+RR+PDI WLRR +DI +L++ +I+ +W LK GG +++
Sbjct: 313 DQQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELAQLQSEIIEAIWPKLKKGGVMVY 372
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSI-----RLNSPG-QLLPTVNKKQDYDGFFYSLFQKR 137
TCS+ EE+++Q F + H ++ +++PG Q LP +D DGF+Y+ KR
Sbjct: 373 ATCSILPEENQQQIATFLQRHSEADLVETGTVSAPGKQNLP---HPEDGDGFYYAKLIKR 429
>gi|291619144|ref|YP_003521886.1| RsmB [Pantoea ananatis LMG 20103]
gi|291154174|gb|ADD78758.1| RsmB [Pantoea ananatis LMG 20103]
Length = 433
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 48/119 (40%), Positives = 73/119 (61%), Gaps = 9/119 (7%)
Query: 25 KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 84
+ FDRIL D PC+ +GV+RR+PDI WLRR DI +L+ +IL+ W +LKPGG +++
Sbjct: 314 RQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAALQREILDATWPLLKPGGTMIYA 373
Query: 85 TCSLWFEESEEQAIIFSKNHKDSIRLNSPG------QLLPTVNKKQDYDGFFYSLFQKR 137
TCS+ +E++ Q F + H D+ ++ G Q+ P + + DGFFY+ KR
Sbjct: 374 TCSVLPDENQRQISEFIERHADAEAVSLSGAPLNGWQVFP---EAEGGDGFFYAKLVKR 429
>gi|330831512|ref|YP_004394464.1| ribosomal RNA small subunit methyltransferase B [Aeromonas veronii
B565]
gi|406675258|ref|ZP_11082447.1| ribosomal RNA small subunit methyltransferase B [Aeromonas veronii
AMC35]
gi|423211837|ref|ZP_17198370.1| ribosomal RNA small subunit methyltransferase B [Aeromonas veronii
AER397]
gi|328806648|gb|AEB51847.1| Ribosomal RNA small subunit methyltransferase B [Aeromonas veronii
B565]
gi|404612638|gb|EKB09696.1| ribosomal RNA small subunit methyltransferase B [Aeromonas veronii
AER397]
gi|404627590|gb|EKB24390.1| ribosomal RNA small subunit methyltransferase B [Aeromonas veronii
AMC35]
Length = 430
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 53/119 (44%), Positives = 72/119 (60%), Gaps = 12/119 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI++L++ +ILN LW LK GG LL+ TC
Sbjct: 314 FDRILLDAPCSATGVIRRHPDIKWLRRDQDIRELAELQRRILNALWGKLKSGGTLLYATC 373
Query: 87 SLWFEESEEQAIIFSKNHKDSIRL--------NSPG-QLLPTVNKKQDYDGFFYSLFQK 136
S+ EE+ EQ F KD+ + + PG Q LP + + DGF+Y+ K
Sbjct: 374 SVLPEENREQIRAFLAATKDAKLVPLHEQDTPDCPGRQFLP---GEAEMDGFYYAKLVK 429
>gi|260599608|ref|YP_003212179.1| 16S rRNA methyltransferase B [Cronobacter turicensis z3032]
gi|260218785|emb|CBA34133.1| Ribosomal RNA small subunit methyltransferase B [Cronobacter
turicensis z3032]
Length = 425
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 52/117 (44%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR +DI +L++ IL+ +W LKPGG LL+ TC
Sbjct: 312 FDRILLDAPCSATGVIRRHPDIKWLRRDSDISELAQLQSDILDAIWPHLKPGGTLLYATC 371
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----RLNSPG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ EQ F D+ +PG Q LP + DGFFY+ K+
Sbjct: 372 SILPEENSEQIRAFLTRTPDAQLDGTGSAQTPGIQNLPGATEG---DGFFYAKLIKK 425
>gi|197287099|ref|YP_002152971.1| 16S rRNA methyltransferase B [Proteus mirabilis HI4320]
gi|425070626|ref|ZP_18473732.1| ribosomal RNA small subunit methyltransferase B [Proteus mirabilis
WGLW4]
gi|224493257|sp|B4F1L5.1|RSMB_PROMH RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|194684586|emb|CAR46442.1| ribosomal RNA small subunit methyltransferase B [Proteus mirabilis
HI4320]
gi|404600148|gb|EKB00596.1| ribosomal RNA small subunit methyltransferase B [Proteus mirabilis
WGLW4]
Length = 422
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 49/114 (42%), Positives = 73/114 (64%), Gaps = 4/114 (3%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
N FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++
Sbjct: 313 NMQFDRILLDAPCSATGVIRRHPDIKWLRRNEDIAQLAQIQKEILHAIWPYLKSGGTLVY 372
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
TCS+ EE+ +Q F + +D+ + + Q LP ++ DGFFY+L K+
Sbjct: 373 ATCSILPEENSQQIAAFLSSMQDA-QCDYQHQCLP---EQYSGDGFFYALINKK 422
>gi|167621966|ref|YP_001672260.1| sun protein [Shewanella halifaxensis HAW-EB4]
gi|167351988|gb|ABZ74601.1| sun protein [Shewanella halifaxensis HAW-EB4]
Length = 426
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 47/122 (38%), Positives = 74/122 (60%), Gaps = 6/122 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+++ FDRIL D PC+ +GV+RR+PDI WLR+ NDI++L++ +I ++ WK LKPGG
Sbjct: 304 WWQGDKFDRILLDAPCSATGVIRRHPDIKWLRKNNDIEELAQLQSQIFDHCWKWLKPGGT 363
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLP------TVNKKQDYDGFFYSLF 134
LL+ TCS+ +E+++Q F D+ + Q P V + + DGF+Y+
Sbjct: 364 LLYATCSILPQENKDQVSAFLARTPDATLVPIEQQANPDDIGWQIVPGQDNMDGFYYARL 423
Query: 135 QK 136
K
Sbjct: 424 VK 425
>gi|429106391|ref|ZP_19168260.1| Ribosomal RNA small subunit methyltransferase B [Cronobacter
malonaticus 681]
gi|426293114|emb|CCJ94373.1| Ribosomal RNA small subunit methyltransferase B [Cronobacter
malonaticus 681]
Length = 431
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 48/114 (42%), Positives = 69/114 (60%), Gaps = 3/114 (2%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR +DI +L++ +IL+ +W LKPGG LL+ TC
Sbjct: 318 FDRILLDAPCSATGVIRRHPDIKWLRRDSDINELAQLQSEILDAIWPHLKPGGTLLYATC 377
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNK---KQDYDGFFYSLFQKR 137
S+ +E+ EQ F D+ + Q P + + DGFFY+ K+
Sbjct: 378 SVLPDENSEQIRAFLTRTPDAQLDGTGSQHTPGIQNLPGATEGDGFFYAKLIKK 431
>gi|120596855|ref|YP_961429.1| sun protein [Shewanella sp. W3-18-1]
gi|120556948|gb|ABM22875.1| sun protein [Shewanella sp. W3-18-1]
Length = 429
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 49/122 (40%), Positives = 76/122 (62%), Gaps = 6/122 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+++ FDRIL D PC+ +GV+RR+PDI WLR+ +DI++L++ +IL++ WK LKPGG
Sbjct: 304 WWQGGLFDRILLDAPCSATGVIRRHPDIKWLRKNHDIEELAELQQQILDHCWKWLKPGGT 363
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDS-----IRLNSPGQLLPTVNKKQD-YDGFFYSLF 134
LL+ TCS+ +E+ +Q F D+ + NSP + + QD DGF+Y+
Sbjct: 364 LLYATCSILPQENRDQISAFLDRTVDAKLDILAQQNSPQDIGWQITPGQDNMDGFYYARL 423
Query: 135 QK 136
K
Sbjct: 424 LK 425
>gi|425070314|ref|ZP_18473428.1| ribosomal RNA small subunit methyltransferase B [Proteus mirabilis
WGLW6]
gi|404595446|gb|EKA95990.1| ribosomal RNA small subunit methyltransferase B [Proteus mirabilis
WGLW6]
Length = 422
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 49/114 (42%), Positives = 73/114 (64%), Gaps = 4/114 (3%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
N FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++
Sbjct: 313 NMQFDRILLDAPCSATGVIRRHPDIKWLRRNEDIAQLAQIQKEILHAIWPYLKSGGTLVY 372
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
TCS+ EE+ +Q F + +D+ + + Q LP ++ DGFFY+L K+
Sbjct: 373 ATCSILPEENSQQIAAFLSSMQDA-QCDYQHQCLP---EQYSGDGFFYALINKK 422
>gi|152998580|ref|YP_001364261.1| sun protein [Shewanella baltica OS185]
gi|151363198|gb|ABS06198.1| sun protein [Shewanella baltica OS185]
Length = 428
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 49/122 (40%), Positives = 76/122 (62%), Gaps = 6/122 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+++ FDRIL D PC+ +GV+RR+PDI WLR+ +DI++L++ +IL + WK LKPGG
Sbjct: 304 WWQGGQFDRILLDAPCSATGVIRRHPDIKWLRKNHDIEELAELQQQILEHCWKWLKPGGT 363
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDS-----IRLNSPGQLLPTVNKKQD-YDGFFYSLF 134
LL+ TCS+ +E+ +Q F + D+ + NSP + + QD DGF+Y+
Sbjct: 364 LLYATCSILPQENRDQISAFLERTADAKLETLSQQNSPQDIGWQITPGQDNMDGFYYARL 423
Query: 135 QK 136
K
Sbjct: 424 LK 425
>gi|444377961|ref|ZP_21177167.1| Ribosomal RNA small subunit methyltransferase B [Enterovibrio sp.
AK16]
gi|443677953|gb|ELT84628.1| Ribosomal RNA small subunit methyltransferase B [Enterovibrio sp.
AK16]
Length = 425
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 47/121 (38%), Positives = 77/121 (63%), Gaps = 8/121 (6%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+++ + FDRIL D PC+ +GV+RR+PDI WLRR +DI +L +IL+ +W LK GG
Sbjct: 307 WWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIDQLVSLQSEILDAMWAQLKSGGT 366
Query: 81 LLFVTCSLWFEESEEQAIIF-SKNHKDSIRLNSPG----QLLPTVNKKQDYDGFFYSLFQ 135
L++ TCS+ +E+ EQ F ++ ++ SP Q+LP +++ DGF+Y++ +
Sbjct: 367 LVYATCSVTPQENAEQVKAFLARTSGATLETGSPEQPGRQILP---GQENMDGFYYAVLK 423
Query: 136 K 136
K
Sbjct: 424 K 424
>gi|307543963|ref|YP_003896442.1| Sun protein [Halomonas elongata DSM 2581]
gi|307215987|emb|CBV41257.1| K03500 Sun protein [Halomonas elongata DSM 2581]
Length = 447
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 51/122 (41%), Positives = 74/122 (60%), Gaps = 16/122 (13%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FD IL D PC+GSGV+RR+PDI LRR +DI KL++ ++L+NLW +L PGG LL+ TC
Sbjct: 327 FDAILLDAPCSGSGVIRRHPDIKRLRRPSDIAKLAELQARLLDNLWPLLAPGGTLLYATC 386
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPG------------QLLPTVNKKQDYDGFFYSLF 134
S+ EE+ +Q F + + + +P QLLP+ + +DGFFY+
Sbjct: 387 SVLPEENADQVQAFLE-RTPGVEVTTPNGLAWGRPAGAGRQLLPSPDS---HDGFFYARL 442
Query: 135 QK 136
+K
Sbjct: 443 RK 444
>gi|146291133|ref|YP_001181557.1| sun protein [Shewanella putrefaciens CN-32]
gi|145562823|gb|ABP73758.1| sun protein [Shewanella putrefaciens CN-32]
Length = 429
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 49/122 (40%), Positives = 76/122 (62%), Gaps = 6/122 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+++ FDRIL D PC+ +GV+RR+PDI WLR+ +DI++L++ +IL++ WK LKPGG
Sbjct: 304 WWQGGLFDRILLDAPCSATGVIRRHPDIKWLRKNHDIEELAELQQQILDHCWKWLKPGGT 363
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDS-----IRLNSPGQLLPTVNKKQD-YDGFFYSLF 134
LL+ TCS+ +E+ +Q F D+ + NSP + + QD DGF+Y+
Sbjct: 364 LLYATCSILPQENRDQISAFLDRTVDAKLDILAQQNSPQDIGWQITPGQDNMDGFYYARL 423
Query: 135 QK 136
K
Sbjct: 424 LK 425
>gi|440759392|ref|ZP_20938532.1| Ribosomal RNA small subunit methyltransferase B [Pantoea
agglomerans 299R]
gi|436426880|gb|ELP24577.1| Ribosomal RNA small subunit methyltransferase B [Pantoea
agglomerans 299R]
Length = 433
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 50/120 (41%), Positives = 75/120 (62%), Gaps = 9/120 (7%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
++ FDRIL D PC+ +GV+RR+PDI WLRR DI +L+K +IL+ +W LKPGG L++
Sbjct: 313 DRQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAKLQSEILDAVWPHLKPGGTLIY 372
Query: 84 VTCSLWFEESEEQAIIFSKNHKDS----IR--LNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
TCS+ EE+ +Q F + D+ +R L + Q+ P + + DGFFY+ K+
Sbjct: 373 ATCSILPEENHQQIDAFLQRQHDAQAVPLRDALANGLQVFP---QAEGGDGFFYAKLIKK 429
>gi|27364478|ref|NP_760006.1| 16S rRNA methyltransferase GidB [Vibrio vulnificus CMCP6]
gi|46396909|sp|Q8DDE5.1|RSMB_VIBVU RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|27360597|gb|AAO09533.1| ribosomal RNA small subunit methyltransferase B [Vibrio vulnificus
CMCP6]
Length = 426
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 49/126 (38%), Positives = 76/126 (60%), Gaps = 8/126 (6%)
Query: 17 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLK 76
N ++++ + FDRIL D PC+ +GV+RR+PDI WLRR DI L++ +I + +W LK
Sbjct: 303 NPEQWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRAEDITALAQLQSEIFDAMWAQLK 362
Query: 77 PGGKLLFVTCSLWFEESEEQAIIF-----SKNHKDSIRLNSPGQLLPTVNKKQDYDGFFY 131
PGG L++ TCS+ E+ EQ F + S R N Q++P ++D DGF+Y
Sbjct: 363 PGGTLVYATCSITPMENVEQVKAFLARTSAAQLVGSERENPGRQIIP---GEEDMDGFYY 419
Query: 132 SLFQKR 137
++ K+
Sbjct: 420 AVLVKQ 425
>gi|269140542|ref|YP_003297243.1| 16S rRNA methyltransferase B [Edwardsiella tarda EIB202]
gi|387869014|ref|YP_005700483.1| Ribosomal RNA small subunit methyltransferase B [Edwardsiella tarda
FL6-60]
gi|267986203|gb|ACY86032.1| 16S rRNA methyltransferase B [Edwardsiella tarda EIB202]
gi|304560327|gb|ADM42991.1| Ribosomal RNA small subunit methyltransferase B [Edwardsiella tarda
FL6-60]
Length = 430
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 48/117 (41%), Positives = 73/117 (62%), Gaps = 11/117 (9%)
Query: 23 KNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLL 82
+ + FDRIL D PC+ +GV+RR+PDI WLRR +DI +L+ +I++ +W LK GG ++
Sbjct: 313 RGRQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELAALQREIIDAVWPFLKSGGVMV 372
Query: 83 FVTCSLWFEESEEQAIIFSKNHKDSIRLNSPG-------QLLPTVNKKQDYDGFFYS 132
+ TCS+ +E++EQ + F H D+ RL+ G Q LP + DGFFY+
Sbjct: 373 YATCSILPQENQEQILAFLSRHPDA-RLSDTGDIQRPGLQFLP---RPDAGDGFFYA 425
>gi|336122748|ref|YP_004564796.1| 16S rRNA m(5)C 967 methyltransferase [Vibrio anguillarum 775]
gi|335340471|gb|AEH31754.1| 16S rRNA m(5)C 967 methyltransferase [Vibrio anguillarum 775]
Length = 426
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 48/122 (39%), Positives = 79/122 (64%), Gaps = 8/122 (6%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRIL D PC+ +GV+RR+PDI WLRR +DI+ L++ +IL+ +WK LK GG
Sbjct: 307 WWHGEQFDRILLDAPCSATGVIRRHPDIKWLRRGSDIEALAQLQSEILDAMWKQLKVGGT 366
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFYSLFQ 135
+++ TCS+ +E+ Q F + ++ + S PG Q+LP ++D DGF+Y++
Sbjct: 367 MVYATCSITPQENSLQVKAFLERTHNAQLVGSDREQPGRQILP---GEEDMDGFYYAVLT 423
Query: 136 KR 137
K+
Sbjct: 424 KQ 425
>gi|157373174|ref|YP_001471774.1| sun protein [Shewanella sediminis HAW-EB3]
gi|157315548|gb|ABV34646.1| sun protein [Shewanella sediminis HAW-EB3]
Length = 426
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 49/125 (39%), Positives = 78/125 (62%), Gaps = 12/125 (9%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+++ FDRIL D PC+ +GV+RR+PDI WLR++ DI++L+ KIL++ W+ LKPGG
Sbjct: 304 WWQGDKFDRILLDAPCSATGVIRRHPDIKWLRKQADIEELASLQSKILDHCWQWLKPGGT 363
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRL-----NSPG----QLLPTVNKKQDYDGFFY 131
LL+ TCS+ +E+E+Q F + D+ + N P Q+ P + ++ DGF+Y
Sbjct: 364 LLYATCSILPQENEQQIRAFLERANDATLVPIDEQNHPDDIGWQITPGL---ENMDGFYY 420
Query: 132 SLFQK 136
+ K
Sbjct: 421 ARLVK 425
>gi|238898791|ref|YP_002924473.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Candidatus
Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
gi|229466551|gb|ACQ68325.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Candidatus
Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
Length = 429
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 47/121 (38%), Positives = 78/121 (64%), Gaps = 3/121 (2%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
++Y+ K FD+IL D+PC+ +G++RR+PDI WLRR +DI L++ +I+ +W L+ GG
Sbjct: 308 QWYEGKMFDKILLDVPCSATGIIRRHPDIKWLRRDSDIAALAQLQSEIIKAVWPTLRQGG 367
Query: 80 KLLFVTCSLWFEESEEQAIIFSKN--HKDSIRLNSPGQL-LPTVNKKQDYDGFFYSLFQK 136
LL+ TCS+ EE+++Q F K+ + +SI + + L + + + DGFFY+ K
Sbjct: 368 MLLYSTCSILPEENQQQITEFLKHQLNAESITIQDEAVIGLQNLPQTDEGDGFFYAKITK 427
Query: 137 R 137
R
Sbjct: 428 R 428
>gi|146313354|ref|YP_001178428.1| 16S rRNA methyltransferase GidB [Enterobacter sp. 638]
gi|224493252|sp|A4WF97.1|RSMB_ENT38 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|145320230|gb|ABP62377.1| 16S rRNA m(5)C-967 methyltransferase [Enterobacter sp. 638]
Length = 428
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 51/115 (44%), Positives = 74/115 (64%), Gaps = 9/115 (7%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
++ FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LKPGG L++
Sbjct: 312 DEQFDRILVDAPCSATGVIRRHPDIKWLRRDRDINELAQLQSEILDAVWPHLKPGGTLVY 371
Query: 84 VTCSLWFEESEEQAIIFSKNHKD-SIRL----NSPG-QLLPTVNKKQDYDGFFYS 132
TCS+ EE+ +Q F K + ++R + PG Q LP +D DGFFY+
Sbjct: 372 ATCSVLPEENSQQIAAFLKRTSNATLRTTGTPDKPGVQNLPGA---EDGDGFFYA 423
>gi|365102969|ref|ZP_09333075.1| ribosomal RNA small subunit methyltransferase B [Citrobacter
freundii 4_7_47CFAA]
gi|363645820|gb|EHL85075.1| ribosomal RNA small subunit methyltransferase B [Citrobacter
freundii 4_7_47CFAA]
Length = 429
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 51/117 (43%), Positives = 71/117 (60%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +ILN W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILNATWSHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+++Q F D++ + PG Q LP +D DGFFY+ K+
Sbjct: 376 SILPEENQQQIAAFLARTPDAVLSETGTPEKPGRQNLPGA---EDGDGFFYAKLIKK 429
>gi|269468281|gb|EEZ79965.1| ribosomal RNA small subunit methyltransferase B [uncultured SUP05
cluster bacterium]
Length = 423
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 54/137 (39%), Positives = 83/137 (60%), Gaps = 6/137 (4%)
Query: 6 IESSDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSC 65
I++ +I K + ++ + F++IL D PC+ +GV+RR+PDI LR+ DI L K
Sbjct: 285 IDNIEIIKGNAQQQDWWDGELFNKILLDAPCSATGVIRRHPDIKLLRKPKDITNLVKLQA 344
Query: 66 KILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS--IRLNSPGQLLPTVNKK 123
KIL NLW MLKP G LL+ TCS+ E+E+Q F ++H D+ I+ N + V K+
Sbjct: 345 KILANLWSMLKPDGVLLYATCSILKSENEDQITHFLESHPDAEEIKTNLDWGIDSFVGKQ 404
Query: 124 Q----DYDGFFYSLFQK 136
Q ++DGF+Y+ +K
Sbjct: 405 QLPSHEFDGFYYAKIRK 421
>gi|342903783|ref|ZP_08725588.1| Ribosomal RNA small subunit methyltransferase B [Haemophilus
haemolyticus M21621]
gi|341954453|gb|EGT80933.1| Ribosomal RNA small subunit methyltransferase B [Haemophilus
haemolyticus M21621]
Length = 450
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 53/120 (44%), Positives = 72/120 (60%), Gaps = 12/120 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR++ DI +L + KIL+ LW+ LKP G LL+ TC
Sbjct: 333 FDRILLDAPCSATGVIRRHPDIKWLRKETDIAQLVELQKKILSALWEKLKPNGVLLYATC 392
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSP---------GQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ EQ F H D+ L+ P Q +P N DGF+Y+ +KR
Sbjct: 393 SVLPEENCEQIQAFLNAHADAELLSLPFSDDKSAVGFQFIPQPNSG---DGFYYAKLRKR 449
>gi|398792545|ref|ZP_10553139.1| ribosomal RNA small subunit methyltransferase RsmB [Pantoea sp.
YR343]
gi|398212923|gb|EJM99524.1| ribosomal RNA small subunit methyltransferase RsmB [Pantoea sp.
YR343]
Length = 428
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 48/117 (41%), Positives = 68/117 (58%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L+ +IL +W LK GG +++ TC
Sbjct: 315 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELANLQREILEAVWPRLKSGGTMIYATC 374
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPG------QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F H D++ P Q+ PT++ DGFFY+ K+
Sbjct: 375 SILPEENHNQISAFLAAHSDAVAETLPQGQTNGWQVFPTIDGG---DGFFYAKLMKK 428
>gi|188535245|ref|YP_001909042.1| 16S rRNA methyltransferase B [Erwinia tasmaniensis Et1/99]
gi|224493254|sp|B2VK95.1|RSMB_ERWT9 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|188030287|emb|CAO98176.1| rRNA methylase Sun [Erwinia tasmaniensis Et1/99]
Length = 429
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 51/117 (43%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L+ +IL+ +W LKPGG LL+ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAALQQQILDAVWPHLKPGGTLLYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----RLNSPG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + H D+ L PG Q+ P + DGF+Y+ K+
Sbjct: 376 SVLPEENHVQIGQFLQRHADATLIETGDLTQPGIQVFPQADGG---DGFYYAKLVKQ 429
>gi|424801328|ref|ZP_18226870.1| Ribosomal RNA small subunit methyltransferase B [Cronobacter
sakazakii 696]
gi|423237049|emb|CCK08740.1| Ribosomal RNA small subunit methyltransferase B [Cronobacter
sakazakii 696]
Length = 437
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 52/117 (44%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR +DI +L++ +IL +W LKPGG LL+ TC
Sbjct: 324 FDRILLDAPCSATGVIRRHPDIKWLRRDSDINELAQLQSEILEAIWPHLKPGGTLLYATC 383
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----RLNSPG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ EQ F D+ +PG Q LP + DGFFY+ K+
Sbjct: 384 SVLPEENSEQIRAFLSRTPDAQLDGTGSTQTPGIQNLPGATEG---DGFFYAKLIKK 437
>gi|373951658|ref|ZP_09611619.1| sun protein [Shewanella baltica OS183]
gi|386322524|ref|YP_006018641.1| sun protein [Shewanella baltica BA175]
gi|333816669|gb|AEG09335.1| sun protein [Shewanella baltica BA175]
gi|373888258|gb|EHQ17150.1| sun protein [Shewanella baltica OS183]
Length = 428
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 48/122 (39%), Positives = 77/122 (63%), Gaps = 6/122 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+++ FDRIL D PC+ +GV+RR+PDI WLR+ +DI++L++ +IL++ WK LKPGG
Sbjct: 304 WWQGGQFDRILLDAPCSATGVIRRHPDIKWLRKNHDIEELAELQQQILDHCWKWLKPGGT 363
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDS-----IRLNSPGQLLPTVNKKQD-YDGFFYSLF 134
+L+ TCS+ +E+ +Q F + D+ + NSP + + QD DGF+Y+
Sbjct: 364 ILYATCSILPQENRDQISAFLERTADAKLDTLSQQNSPQDIGWQITPGQDNMDGFYYARL 423
Query: 135 QK 136
K
Sbjct: 424 LK 425
>gi|429111892|ref|ZP_19173662.1| Ribosomal RNA small subunit methyltransferase B [Cronobacter
malonaticus 507]
gi|426313049|emb|CCJ99775.1| Ribosomal RNA small subunit methyltransferase B [Cronobacter
malonaticus 507]
Length = 429
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 48/114 (42%), Positives = 69/114 (60%), Gaps = 3/114 (2%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR +DI +L++ +IL+ +W LKPGG LL+ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDSDINELAQLQSEILDAIWPHLKPGGTLLYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNK---KQDYDGFFYSLFQKR 137
S+ +E+ EQ F D+ + Q P + + DGFFY+ K+
Sbjct: 376 SVLPDENSEQIRAFLTRTPDAQLDGTGSQHTPGIQNLPGATEGDGFFYAKLIKK 429
>gi|307262046|ref|ZP_07543700.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|306868225|gb|EFN00048.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
Length = 432
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 52/119 (43%), Positives = 72/119 (60%), Gaps = 11/119 (9%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR++NDI +L KIL LW LKP G L++ TC
Sbjct: 317 FDRILLDAPCSATGVIRRHPDIKWLRKENDIAELVALQAKILEALWGRLKPNGVLVYATC 376
Query: 87 SLWFEESEEQAIIFSKNHKDS--IRLNSPG------QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ EQ F +H D+ + ++ G Q P ++Q DGFFY+ K+
Sbjct: 377 SVLPEENGEQITRFVASHSDAEWVEMDFNGEKTAMKQFFP---QEQGGDGFFYAKLIKQ 432
>gi|238921411|ref|YP_002934926.1| ribosomal RNA small subunit methyltransferase B, putative
[Edwardsiella ictaluri 93-146]
gi|238870980|gb|ACR70691.1| ribosomal RNA small subunit methyltransferase B, putative
[Edwardsiella ictaluri 93-146]
Length = 430
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 48/115 (41%), Positives = 72/115 (62%), Gaps = 11/115 (9%)
Query: 25 KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 84
+ FDRIL D PC+ +GV+RR+PDI WLRR +DI +L+ +I++ +W LK GG +++
Sbjct: 315 RQFDRILLDAPCSATGVIRRHPDIKWLRRDSDITELAALQREIIDAVWPFLKSGGVMVYA 374
Query: 85 TCSLWFEESEEQAIIFSKNHKDSIRLNSPG-------QLLPTVNKKQDYDGFFYS 132
TCS+ +E++EQ + F H D+ RL+ G Q LP + DGFFY+
Sbjct: 375 TCSILPQENQEQILTFLSRHPDA-RLSDTGDIQRPGLQFLP---RPDAGDGFFYT 425
>gi|365540339|ref|ZP_09365514.1| 16S rRNA methyltransferase B [Vibrio ordalii ATCC 33509]
Length = 426
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 48/122 (39%), Positives = 79/122 (64%), Gaps = 8/122 (6%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRIL D PC+ +GV+RR+PDI WLRR +DI+ L++ +IL+ +WK LK GG
Sbjct: 307 WWHGEQFDRILLDAPCSATGVIRRHPDIKWLRRGSDIEALAQLQSEILDAMWKQLKVGGT 366
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFYSLFQ 135
+++ TCS+ +E+ Q F + ++ + S PG Q+LP ++D DGF+Y++
Sbjct: 367 MVYATCSVTPQENSLQVKAFLERTHNAQLVGSDREQPGRQILP---GEEDMDGFYYAVLT 423
Query: 136 KR 137
K+
Sbjct: 424 KQ 425
>gi|307246481|ref|ZP_07528553.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|306852544|gb|EFM84777.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
Length = 432
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 52/119 (43%), Positives = 72/119 (60%), Gaps = 11/119 (9%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR++NDI +L KIL LW LKP G L++ TC
Sbjct: 317 FDRILLDAPCSATGVIRRHPDIKWLRKENDIAELVALQAKILEALWGRLKPNGVLVYATC 376
Query: 87 SLWFEESEEQAIIFSKNHKDS--IRLNSPG------QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ EQ F +H D+ + ++ G Q P ++Q DGFFY+ K+
Sbjct: 377 SVLPEENGEQITRFVASHSDAEWVEMDFNGEKTAMKQFFP---QEQGGDGFFYAKLIKQ 432
>gi|53729217|ref|ZP_00348347.1| COG0144: tRNA and rRNA cytosine-C5-methylases [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|126209024|ref|YP_001054249.1| ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 5b str. L20]
gi|165976991|ref|YP_001652584.1| SUN protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
gi|190150891|ref|YP_001969416.1| ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|303252922|ref|ZP_07339079.1| SUN protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
gi|307248606|ref|ZP_07530620.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|307250839|ref|ZP_07532767.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|307255464|ref|ZP_07537270.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|307257633|ref|ZP_07539392.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|307259916|ref|ZP_07541629.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|307264244|ref|ZP_07545834.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
gi|126097816|gb|ABN74644.1| ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 5b str. L20]
gi|165877092|gb|ABY70140.1| SUN protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
gi|189916022|gb|ACE62274.1| ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|302648230|gb|EFL78429.1| SUN protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
gi|306854817|gb|EFM87006.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|306857089|gb|EFM89217.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|306861506|gb|EFM93494.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|306863808|gb|EFM95732.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|306865944|gb|EFM97819.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|306870415|gb|EFN02169.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
Length = 432
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 52/119 (43%), Positives = 72/119 (60%), Gaps = 11/119 (9%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR++NDI +L KIL LW LKP G L++ TC
Sbjct: 317 FDRILLDAPCSATGVIRRHPDIKWLRKENDIAELVALQAKILEALWGRLKPNGVLVYATC 376
Query: 87 SLWFEESEEQAIIFSKNHKDS--IRLNSPG------QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ EQ F +H D+ + ++ G Q P ++Q DGFFY+ K+
Sbjct: 377 SVLPEENGEQITRFVASHSDAEWVEMDFNGEKTAMKQFFP---QEQGGDGFFYAKLIKQ 432
>gi|59713152|ref|YP_205928.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Vibrio fischeri
ES114]
gi|423687274|ref|ZP_17662082.1| 16S rRNA methyltransferase B [Vibrio fischeri SR5]
gi|59481253|gb|AAW87040.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Vibrio fischeri
ES114]
gi|371493533|gb|EHN69135.1| 16S rRNA methyltransferase B [Vibrio fischeri SR5]
Length = 426
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 48/122 (39%), Positives = 77/122 (63%), Gaps = 9/122 (7%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++K + FDRIL D PC+ +GV+RR+PDI WLRR DIK L++ +I + +W LK GG
Sbjct: 307 WWKGEQFDRILLDAPCSATGVIRRHPDIKWLRRSEDIKALAELQSEIFDAMWLQLKSGGT 366
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLF 134
+++ TCS+ E+ +Q F D+ +++ PG Q+LP +++ DGF+Y++
Sbjct: 367 MVYATCSITPLENCDQVKAFLARTSDATLIDNTDPEKPGRQILP---GEENMDGFYYAVL 423
Query: 135 QK 136
QK
Sbjct: 424 QK 425
>gi|385786294|ref|YP_005817403.1| Ribosomal RNA small subunit methyltransferase B [Erwinia sp.
Ejp617]
gi|310765566|gb|ADP10516.1| Ribosomal RNA small subunit methyltransferase B [Erwinia sp.
Ejp617]
Length = 441
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 50/120 (41%), Positives = 73/120 (60%), Gaps = 9/120 (7%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
++ FDRIL D PC+ +GV+RR+PDI WLRR DI +L+ +IL+ +W LK GG LL+
Sbjct: 325 DRLFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAALQQQILDAVWPYLKSGGTLLY 384
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSI-----RLNSPG-QLLPTVNKKQDYDGFFYSLFQKR 137
TCS+ EE+ Q F + H +++ L PG Q+ P V+ DGF+Y+ K+
Sbjct: 385 ATCSVLPEENHLQISQFLQRHANAVLVETGDLTQPGIQVFPQVDGG---DGFYYAKLVKK 441
>gi|387872968|ref|YP_005804355.1| ribosomal RNA small subunit methyltransferase B [Erwinia pyrifoliae
DSM 12163]
gi|283480068|emb|CAY75984.1| Ribosomal RNA small subunit methyltransferase B [Erwinia pyrifoliae
DSM 12163]
Length = 456
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 50/120 (41%), Positives = 73/120 (60%), Gaps = 9/120 (7%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
++ FDRIL D PC+ +GV+RR+PDI WLRR DI +L+ +IL+ +W LK GG LL+
Sbjct: 340 DRLFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAALQQQILDAVWPYLKSGGTLLY 399
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSI-----RLNSPG-QLLPTVNKKQDYDGFFYSLFQKR 137
TCS+ EE+ Q F + H +++ L PG Q+ P V+ DGF+Y+ K+
Sbjct: 400 ATCSVLPEENHLQISQFLQRHANAVLVETGDLTQPGIQVFPQVDGG---DGFYYAKLVKK 456
>gi|259909968|ref|YP_002650324.1| 16S rRNA methyltransferase B [Erwinia pyrifoliae Ep1/96]
gi|224965590|emb|CAX57122.1| 16S rRNA methyltransferase B [Erwinia pyrifoliae Ep1/96]
Length = 429
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 50/120 (41%), Positives = 73/120 (60%), Gaps = 9/120 (7%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
++ FDRIL D PC+ +GV+RR+PDI WLRR DI +L+ +IL+ +W LK GG LL+
Sbjct: 313 DRLFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAALQQQILDAVWPYLKSGGTLLY 372
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSI-----RLNSPG-QLLPTVNKKQDYDGFFYSLFQKR 137
TCS+ EE+ Q F + H +++ L PG Q+ P V+ DGF+Y+ K+
Sbjct: 373 ATCSVLPEENHLQISQFLQRHANAVLVETGDLTQPGIQVFPQVDGG---DGFYYAKLVKK 429
>gi|213620689|ref|ZP_03373472.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhi str. E98-2068]
Length = 224
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 79/132 (59%), Gaps = 9/132 (6%)
Query: 13 KKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNN 70
K+ + R+ ++ + FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+
Sbjct: 95 KQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDA 154
Query: 71 LWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSI-----RLNSPGQLLPTVNKKQD 125
+W LKPGG L++ TCS+ EE+ +Q F + D+ + PGQ + ++
Sbjct: 155 VWPRLKPGGTLVYATCSVLPEENRDQIKAFLQRTPDAALSETGTPDQPGQQ--NLPGGEE 212
Query: 126 YDGFFYSLFQKR 137
DGFFY+ K+
Sbjct: 213 GDGFFYAKLIKK 224
>gi|381157104|ref|ZP_09866338.1| ribosomal RNA small subunit methyltransferase RsmB [Thiorhodovibrio
sp. 970]
gi|380880967|gb|EIC23057.1| ribosomal RNA small subunit methyltransferase RsmB [Thiorhodovibrio
sp. 970]
Length = 465
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 48/120 (40%), Positives = 70/120 (58%), Gaps = 13/120 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
+DRIL D PC+G+GV+RR+PDI WLRR DI L+ ++L+ LW +++P G++L+VTC
Sbjct: 348 YDRILLDAPCSGTGVIRRHPDIKWLRRDQDIAALADTQARLLDALWPLIRPRGEMLYVTC 407
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSP----------GQLLPTVNKKQDYDGFFYSLFQK 136
SL EE+ +Q F H D+ P Q LP+ + DGFF++ K
Sbjct: 408 SLLPEENTQQIAAFLARHPDAREARIPVDLGLECQYGRQRLPSAHGS---DGFFFARLVK 464
>gi|449146180|ref|ZP_21776972.1| Ribosomal RNA small subunit methyltransferase B [Vibrio mimicus
CAIM 602]
gi|449078172|gb|EMB49114.1| Ribosomal RNA small subunit methyltransferase B [Vibrio mimicus
CAIM 602]
Length = 426
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 48/122 (39%), Positives = 78/122 (63%), Gaps = 8/122 (6%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+++ + FDRIL D PC+ +GV+RR+PDI WLRR DI L++ +IL+ +W+ LKPGG
Sbjct: 307 WWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRAEDIPALAELQREILDAMWQQLKPGGT 366
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFYSLFQ 135
L++ TCS+ +E+ Q F + ++ + S PG Q+LP ++ DGF+Y++
Sbjct: 367 LVYATCSITPQENSLQVKAFLERTPNASLVGSDPAQPGRQILP---GEEAMDGFYYAVLS 423
Query: 136 KR 137
K+
Sbjct: 424 KQ 425
>gi|437966208|ref|ZP_20852618.1| 16S rRNA methyltransferase B, partial [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-5646]
gi|435339869|gb|ELP08581.1| 16S rRNA methyltransferase B, partial [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-5646]
Length = 251
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 79/132 (59%), Gaps = 9/132 (6%)
Query: 13 KKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNN 70
K+ + R+ ++ + FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+
Sbjct: 122 KQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDA 181
Query: 71 LWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSI-----RLNSPGQLLPTVNKKQD 125
+W LKPGG L++ TCS+ EE+ +Q F + D+ + PGQ + ++
Sbjct: 182 VWPRLKPGGTLVYATCSVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQQ--NLPGGEE 239
Query: 126 YDGFFYSLFQKR 137
DGFFY+ K+
Sbjct: 240 GDGFFYAKLIKK 251
>gi|375335508|ref|ZP_09776852.1| sun protein [Succinivibrionaceae bacterium WG-1]
Length = 455
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 77/121 (63%), Gaps = 12/121 (9%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
+++IL D PC+ GV+RR+PDI WLR + +IK + KILNN+W +L PGG L++ TC
Sbjct: 338 YNKILLDAPCSALGVIRRHPDIKWLRTEAEIKNICNLQQKILNNVWNLLSPGGILVYATC 397
Query: 87 SLWFEESEEQAIIFSKNHKD--------SIRLNSPG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+++Q F K HKD + +++PG Q LP ++ + DGF+Y+ K+
Sbjct: 398 SILPEENKKQVSEFLKTHKDAELIPIVATENIDNPGLQRLPGID---NTDGFYYARITKK 454
Query: 138 K 138
K
Sbjct: 455 K 455
>gi|262166812|ref|ZP_06034549.1| ribosomal RNA small subunit methyltransferase B [Vibrio mimicus
VM223]
gi|262026528|gb|EEY45196.1| ribosomal RNA small subunit methyltransferase B [Vibrio mimicus
VM223]
Length = 426
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 48/122 (39%), Positives = 78/122 (63%), Gaps = 8/122 (6%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+++ + FDRIL D PC+ +GV+RR+PDI WLRR DI L++ +IL+ +W+ LKPGG
Sbjct: 307 WWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRAEDIPALAELQREILDAMWQQLKPGGT 366
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFYSLFQ 135
L++ TCS+ +E+ Q F + ++ + S PG Q+LP ++ DGF+Y++
Sbjct: 367 LVYATCSITPQENSLQVKAFLERTPNASLVGSDPAQPGRQILP---GEEAMDGFYYAVLS 423
Query: 136 KR 137
K+
Sbjct: 424 KQ 425
>gi|262172810|ref|ZP_06040488.1| ribosomal RNA small subunit methyltransferase B [Vibrio mimicus
MB-451]
gi|424810974|ref|ZP_18236308.1| sun protein [Vibrio mimicus SX-4]
gi|261893886|gb|EEY39872.1| ribosomal RNA small subunit methyltransferase B [Vibrio mimicus
MB-451]
gi|342321985|gb|EGU17781.1| sun protein [Vibrio mimicus SX-4]
Length = 426
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 48/122 (39%), Positives = 78/122 (63%), Gaps = 8/122 (6%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+++ + FDRIL D PC+ +GV+RR+PDI WLRR DI L++ +IL+ +W+ LKPGG
Sbjct: 307 WWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRAEDIPALAELQREILDAMWQQLKPGGT 366
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFYSLFQ 135
L++ TCS+ +E+ Q F + ++ + S PG Q+LP ++ DGF+Y++
Sbjct: 367 LVYATCSITPQENSLQVKAFLERTPNASLVGSDPAQPGRQILP---GEEAMDGFYYAVLS 423
Query: 136 KR 137
K+
Sbjct: 424 KQ 425
>gi|258622988|ref|ZP_05718003.1| sun protein [Vibrio mimicus VM573]
gi|258584771|gb|EEW09505.1| sun protein [Vibrio mimicus VM573]
Length = 438
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 48/122 (39%), Positives = 78/122 (63%), Gaps = 8/122 (6%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+++ + FDRIL D PC+ +GV+RR+PDI WLRR DI L++ +IL+ +W+ LKPGG
Sbjct: 319 WWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRAEDIPALAELQREILDAMWQQLKPGGT 378
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFYSLFQ 135
L++ TCS+ +E+ Q F + ++ + S PG Q+LP ++ DGF+Y++
Sbjct: 379 LVYATCSITPQENSLQVKAFLERTPNASLVGSDPAQPGRQILP---GEEAMDGFYYAVLS 435
Query: 136 KR 137
K+
Sbjct: 436 KQ 437
>gi|258626112|ref|ZP_05720963.1| sun protein [Vibrio mimicus VM603]
gi|258581638|gb|EEW06536.1| sun protein [Vibrio mimicus VM603]
Length = 438
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 48/122 (39%), Positives = 78/122 (63%), Gaps = 8/122 (6%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+++ + FDRIL D PC+ +GV+RR+PDI WLRR DI L++ +IL+ +W+ LKPGG
Sbjct: 319 WWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRAEDIPALAELQREILDAMWQQLKPGGT 378
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFYSLFQ 135
L++ TCS+ +E+ Q F + ++ + S PG Q+LP ++ DGF+Y++
Sbjct: 379 LVYATCSITPQENSLQVKAFLERTPNASLVGSDPAQPGRQILP---GEEAMDGFYYAVLS 435
Query: 136 KR 137
K+
Sbjct: 436 KQ 437
>gi|197334196|ref|YP_002157328.1| ribosomal RNA small subunit methyltransferase B [Vibrio fischeri
MJ11]
gi|197315686|gb|ACH65133.1| ribosomal RNA small subunit methyltransferase B [Vibrio fischeri
MJ11]
Length = 451
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 48/122 (39%), Positives = 77/122 (63%), Gaps = 9/122 (7%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++K + FDRIL D PC+ +GV+RR+PDI WLRR DIK L++ +I + +W LK GG
Sbjct: 332 WWKGEQFDRILLDAPCSATGVIRRHPDIKWLRRAEDIKALAELQSEIFDAMWLQLKSGGT 391
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLF 134
+++ TCS+ E+ +Q F D+ +++ PG Q+LP +++ DGF+Y++
Sbjct: 392 MVYATCSITPLENCDQVKAFLARTSDATLIDNTDPEKPGRQILP---GEENMDGFYYAVL 448
Query: 135 QK 136
QK
Sbjct: 449 QK 450
>gi|90581174|ref|ZP_01236973.1| Putative Sun protein [Photobacterium angustum S14]
gi|90437695|gb|EAS62887.1| Putative Sun protein [Vibrio angustum S14]
Length = 426
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 48/122 (39%), Positives = 74/122 (60%), Gaps = 8/122 (6%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
++++ FDRIL D PC+ +GV+RR+PDI WLRR DI L+ +I + +W LKPGG
Sbjct: 306 QWWQGDKFDRILLDAPCSATGVIRRHPDIKWLRRGEDIAALATLQAEIFDAMWLQLKPGG 365
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFYSLF 134
L++ TCS+ +E+ +Q F D+ + S PG Q+LP ++ DGF+Y++
Sbjct: 366 TLVYATCSITPQENCDQVKAFLARTSDATLIGSDPAKPGRQILP---GEESMDGFYYAVL 422
Query: 135 QK 136
K
Sbjct: 423 TK 424
>gi|452122779|ref|YP_007473027.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Javiana str. CFSAN001992]
gi|451911783|gb|AGF83589.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Javiana str. CFSAN001992]
Length = 429
Score = 99.8 bits (247), Expect = 4e-19, Method: Composition-based stats.
Identities = 49/116 (42%), Positives = 71/116 (61%), Gaps = 7/116 (6%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LKPGG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----RLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ EQ F + D+ + PGQ + ++ DGFFY+ K+
Sbjct: 376 SVLPEENREQIKAFLQRTPDAALSKTGTPDQPGQ--QNLPGGEEGDGFFYAKLIKK 429
>gi|429102056|ref|ZP_19164030.1| Ribosomal RNA small subunit methyltransferase B [Cronobacter
turicensis 564]
gi|426288705|emb|CCJ90143.1| Ribosomal RNA small subunit methyltransferase B [Cronobacter
turicensis 564]
Length = 200
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 77/133 (57%), Gaps = 11/133 (8%)
Query: 13 KKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNN 70
K + RF + + FDRIL D PC+ +GV+RR+PDI WLRR +DI +L++ IL+
Sbjct: 71 KVGDGRFPATWCGDTQFDRILLDAPCSATGVIRRHPDIKWLRRDSDISELAQLQSDILDA 130
Query: 71 LWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSI-----RLNSPG-QLLPTVNKKQ 124
+W LKPGG LL+ TCS+ EE+ EQ F +++ +PG Q LP +
Sbjct: 131 IWPHLKPGGTLLYATCSILPEENSEQIRAFLTRTPNALLDGTGSAQTPGIQNLPGATEG- 189
Query: 125 DYDGFFYSLFQKR 137
DGFFY+ K+
Sbjct: 190 --DGFFYAKLIKK 200
>gi|145633872|ref|ZP_01789593.1| methionyl-tRNA formyltransferase [Haemophilus influenzae 3655]
gi|144985244|gb|EDJ92087.1| methionyl-tRNA formyltransferase [Haemophilus influenzae 3655]
Length = 265
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 71/120 (59%), Gaps = 12/120 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR++ DI +L + KIL+ LW+ LKP G LL+ TC
Sbjct: 147 FDRILLDAPCSATGVIRRHPDIKWLRKETDIAQLVELQKKILSALWEKLKPNGVLLYATC 206
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSP---------GQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ EQ F H D+ L+ P Q +P N DGF+Y+ KR
Sbjct: 207 SVLPEENCEQIQAFLNAHADAELLSLPFSDDKSAVGFQFIPQPNSG---DGFYYAKLLKR 263
>gi|385873667|gb|AFI92187.1| Ribosomal RNA small subunit methyltransferase B [Pectobacterium sp.
SCC3193]
Length = 429
Score = 99.8 bits (247), Expect = 4e-19, Method: Composition-based stats.
Identities = 48/120 (40%), Positives = 73/120 (60%), Gaps = 9/120 (7%)
Query: 23 KNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLL 82
+ + FDRIL D PC+ +GV+RR+PDI WLRR DI++L +I++ W LKPGG ++
Sbjct: 312 EGRMFDRILLDAPCSATGVIRRHPDIKWLRRDRDIEELVALQKEIIDATWPHLKPGGTMV 371
Query: 83 FVTCSLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQK 136
+ TCS+ +E+ +Q F H D+ +++ PG Q+LP + DGFFY+ K
Sbjct: 372 YATCSILPQENAQQVTDFLSRHADATLVDTGTSEIPGIQMLPHADGG---DGFFYAKLVK 428
>gi|300721396|ref|YP_003710667.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Xenorhabdus
nematophila ATCC 19061]
gi|297627884|emb|CBJ88430.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Xenorhabdus
nematophila ATCC 19061]
Length = 437
Score = 99.8 bits (247), Expect = 4e-19, Method: Composition-based stats.
Identities = 50/112 (44%), Positives = 69/112 (61%), Gaps = 9/112 (8%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L +IL+ +W LK G L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRNEDIDQLVTLQSEILDAIWPYLKKNGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----RLNSPG-QLLPTVNKKQDYDGFFYS 132
S+ +E+ EQ F K H D++ L PG Q++P V + DGFFY+
Sbjct: 376 SILPQENSEQIKAFLKRHTDAVLSETGSLEKPGTQIIPEV---EGGDGFFYA 424
>gi|261342758|ref|ZP_05970616.1| ribosomal RNA small subunit methyltransferase B [Enterobacter
cancerogenus ATCC 35316]
gi|288314937|gb|EFC53875.1| ribosomal RNA small subunit methyltransferase B [Enterobacter
cancerogenus ATCC 35316]
Length = 428
Score = 99.8 bits (247), Expect = 4e-19, Method: Composition-based stats.
Identities = 51/115 (44%), Positives = 71/115 (61%), Gaps = 9/115 (7%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
N FDRIL D PC+ +GV+RR+PDI WLRR DIK+L++ IL+ +W LK GG L++
Sbjct: 312 NTQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIKELAQLQSDILDAIWPHLKAGGTLVY 371
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSIRLNS-----PGQL-LPTVNKKQDYDGFFYS 132
TCS+ EE+ +Q F K D+ ++ PGQ LP ++ DGFFY+
Sbjct: 372 ATCSVLPEENSQQIAAFLKRTPDAALHDTGTPEQPGQQNLPGA---EEGDGFFYA 423
>gi|238758791|ref|ZP_04619965.1| Ribosomal RNA small subunit methyltransferase B [Yersinia aldovae
ATCC 35236]
gi|238703088|gb|EEP95631.1| Ribosomal RNA small subunit methyltransferase B [Yersinia aldovae
ATCC 35236]
Length = 429
Score = 99.4 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 45/117 (38%), Positives = 73/117 (62%), Gaps = 3/117 (2%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
++ FDRIL D PC+ +GV+RR+PDI WLRR +DI L+K +I+ +W LK GG +++
Sbjct: 313 DQQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIADLAKLQSEIVEAIWPKLKKGGVMVY 372
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLP---TVNKKQDYDGFFYSLFQKR 137
TCS+ +E+++Q F + H ++ + + + P + +D DGFFY+ KR
Sbjct: 373 ATCSILPDENQQQIAAFLQRHSEAELVETGTAVAPGKQNLPHPEDGDGFFYAKLIKR 429
>gi|417839633|ref|ZP_12485806.1| Ribosomal RNA small subunit methyltransferase B [Haemophilus
haemolyticus M19107]
gi|341951999|gb|EGT78542.1| Ribosomal RNA small subunit methyltransferase B [Haemophilus
haemolyticus M19107]
Length = 450
Score = 99.4 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 53/120 (44%), Positives = 72/120 (60%), Gaps = 12/120 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR+++DI +L + KIL+ LW+ LKP G LL+ TC
Sbjct: 333 FDRILLDAPCSATGVIRRHPDIKWLRKESDIAQLVELQKKILSALWEKLKPSGVLLYATC 392
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSP---------GQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ EQ F H D+ L+ P Q +P N DGF+Y+ KR
Sbjct: 393 SVLPEENCEQIQAFLNAHADAELLSLPFGDDKSAVGFQFIPQPNSG---DGFYYAKLCKR 449
>gi|406595021|ref|YP_006746151.1| 16S rRNA methyltransferase B [Alteromonas macleodii ATCC 27126]
gi|406372342|gb|AFS35597.1| 16S rRNA methyltransferase B [Alteromonas macleodii ATCC 27126]
Length = 439
Score = 99.4 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 51/128 (39%), Positives = 76/128 (59%), Gaps = 12/128 (9%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ K FDRIL D PC+ +GV+RR+PDI WLR+ NDI L++ +IL+ LW +LKPGG
Sbjct: 315 WWDGKPFDRILLDAPCSATGVIRRHPDIRWLRKANDIDNLAQLQRRILDTLWGLLKPGGT 374
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSI--------RLNSPG-QLLPTVNKKQDYDGFFY 131
LL+ TCS+ +E+ Q F + D+ ++ PG Q+ P +Q DGF+Y
Sbjct: 375 LLYATCSILPKENMAQIQQFLSDTPDATLSPILKTETVDKPGRQITP---GEQQMDGFYY 431
Query: 132 SLFQKRKE 139
+ K +
Sbjct: 432 ARLVKSAD 439
>gi|358451495|ref|ZP_09161928.1| sun protein [Marinobacter manganoxydans MnI7-9]
gi|357223964|gb|EHJ02496.1| sun protein [Marinobacter manganoxydans MnI7-9]
Length = 433
Score = 99.4 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 48/127 (37%), Positives = 77/127 (60%), Gaps = 13/127 (10%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
+++ + FDRIL D+PC+ SGV+RR+PDI LRR++DI L+ +L+ +W +LKPGG
Sbjct: 307 QWWDGEAFDRILLDVPCSASGVIRRHPDIKLLRRESDITPLAAIQLGLLDAMWAILKPGG 366
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSI----------RLNSPGQLLPTVNKKQDYDGF 129
+L++ TCS++ +E+ F K D+I + + QLLP +DGF
Sbjct: 367 RLVYATCSVFPQENHRIIQRFCKQQTDAILVEPEAQWGRDMGAGRQLLP---DPDSHDGF 423
Query: 130 FYSLFQK 136
FY++ +K
Sbjct: 424 FYAVLEK 430
>gi|385333483|ref|YP_005887434.1| rRNA SAM-dependent methyltransferase [Marinobacter adhaerens HP15]
gi|311696633|gb|ADP99506.1| Fmu, rRNA SAM-dependent methyltransferase [Marinobacter adhaerens
HP15]
Length = 426
Score = 99.4 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 48/127 (37%), Positives = 77/127 (60%), Gaps = 13/127 (10%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
+++ + FDRIL D+PC+ SGV+RR+PDI LRR++DI L+ +L+ +W +LKPGG
Sbjct: 300 QWWDGEAFDRILLDVPCSASGVIRRHPDIKLLRRESDITPLAAIQLGLLDAMWAILKPGG 359
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSI----------RLNSPGQLLPTVNKKQDYDGF 129
+L++ TCS++ +E+ F K D+I + + QLLP +DGF
Sbjct: 360 RLVYATCSVFPQENHRIIQRFCKQQTDAILVEPEAQWGRDMGAGRQLLP---DPDSHDGF 416
Query: 130 FYSLFQK 136
FY++ +K
Sbjct: 417 FYAVLEK 423
>gi|170724406|ref|YP_001758432.1| sun protein [Shewanella woodyi ATCC 51908]
gi|169809753|gb|ACA84337.1| sun protein [Shewanella woodyi ATCC 51908]
Length = 425
Score = 99.4 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 47/122 (38%), Positives = 74/122 (60%), Gaps = 6/122 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+++ FDRIL D PC+ +GV+RR+PDI WLR++ DI++L++ KIL++ WK LKPGG
Sbjct: 303 WWQGDKFDRILLDAPCSATGVIRRHPDIKWLRKQADIEELAQLQSKILDHCWKWLKPGGT 362
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLP------TVNKKQDYDGFFYSLF 134
LL+ TCS+ +E+ +Q F + D+ + Q P ++ DGF+Y+
Sbjct: 363 LLYATCSILPQENAQQISAFLERTHDATLIAISQQPNPDDIGWQITPGTENMDGFYYARL 422
Query: 135 QK 136
K
Sbjct: 423 VK 424
>gi|87121018|ref|ZP_01076910.1| Fmu, rRNA SAM-dependent methyltransferase [Marinomonas sp. MED121]
gi|86163856|gb|EAQ65129.1| Fmu, rRNA SAM-dependent methyltransferase [Marinomonas sp. MED121]
Length = 412
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 74/120 (61%), Gaps = 13/120 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FD+IL D+PC+ +GV+RRNPDI R+ DI +L + +++NN+W LKPGGKLL+ TC
Sbjct: 292 FDKILLDVPCSATGVIRRNPDIKINRKPADIVELVEIQKQLVNNIWLALKPGGKLLYATC 351
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLN---------SPG-QLLPTVNKKQDYDGFFYSLFQK 136
S+ EE+E Q F +D+ +N S G QLLP K +DGF+Y L +K
Sbjct: 352 SVMPEENEHQMAEFLSTTEDAKEINLTVPWGKKVSHGIQLLPN---KNSHDGFYYCLIEK 408
>gi|209693697|ref|YP_002261625.1| ribosomal RNA small subunit methyltransferase B [Aliivibrio
salmonicida LFI1238]
gi|208007648|emb|CAQ77758.1| ribosomal RNA small subunit methyltransferase B [Aliivibrio
salmonicida LFI1238]
Length = 444
Score = 99.4 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 46/122 (37%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+++ + FDRIL D PC+ +GV+RR+PDI WLRR DIK L++ +I + +W LK GG
Sbjct: 325 WWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRSEDIKALAELQSEIFDAMWLQLKSGGT 384
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLF 134
+++ TCS+ +E+ +Q F + +++ +++ PG Q+LP +++ DGF+Y++
Sbjct: 385 MVYATCSITPQENGDQVKAFLERTENASLVDNTDPAKPGRQILP---GEENMDGFYYAVL 441
Query: 135 QK 136
QK
Sbjct: 442 QK 443
>gi|423141924|ref|ZP_17129562.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. houtenae str. ATCC BAA-1581]
gi|379049853|gb|EHY67746.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. houtenae str. ATCC BAA-1581]
Length = 429
Score = 99.4 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 50/117 (42%), Positives = 72/117 (61%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LKPGG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----RLNSPGQL-LPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ +Q F + D+ + PGQ LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSDQIKTFLQRTPDAALSETGTPDQPGQQNLPGA---EEGDGFFYAKLIKK 429
>gi|161506038|ref|YP_001573150.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. arizonae
serovar 62:z4,z23:- str. RSK2980]
gi|224493259|sp|A9MN78.1|RSMB_SALAR RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|160867385|gb|ABX24008.1| hypothetical protein SARI_04219 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
Length = 429
Score = 99.4 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 51/117 (43%), Positives = 71/117 (60%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L+K +IL+ +W LKPGG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAKLQAEILDTVWPRLKPGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----RLNSPGQL-LPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PGQ LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSAQINAFLQRTPDAALSETGTPDQPGQQNLPGA---EEGDGFFYAKLIKK 429
>gi|323142778|ref|ZP_08077491.1| ribosomal RNA small subunit methyltransferase B [Succinatimonas
hippei YIT 12066]
gi|322417423|gb|EFY08044.1| ribosomal RNA small subunit methyltransferase B [Succinatimonas
hippei YIT 12066]
Length = 443
Score = 99.4 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 50/111 (45%), Positives = 65/111 (58%), Gaps = 5/111 (4%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+G+GV+RR+PDI WLRR+ DI L+ KIL++ + LK GG LL+ TC
Sbjct: 327 FDRILVDAPCSGTGVIRRHPDIKWLRREGDIANLTAIQAKILDSAFSKLKKGGILLYTTC 386
Query: 87 SLWFEESEEQAIIFSKNHKDSIRL-----NSPGQLLPTVNKKQDYDGFFYS 132
S+ EE+ EQ F H D+ L G + D DGFFY+
Sbjct: 387 SILPEENSEQIEAFLSRHADAKLLPFNIFGQSGGTFQHLPGDDDADGFFYA 437
>gi|157148863|ref|YP_001456182.1| 16S rRNA methyltransferase B [Citrobacter koseri ATCC BAA-895]
gi|224493244|sp|A8AQI3.1|RSMB_CITK8 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|157086068|gb|ABV15746.1| hypothetical protein CKO_04701 [Citrobacter koseri ATCC BAA-895]
Length = 428
Score = 99.4 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 47/114 (41%), Positives = 69/114 (60%), Gaps = 3/114 (2%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L+K +IL+ +W LK GG L++ TC
Sbjct: 315 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAKLQSEILDAIWPHLKSGGTLVYATC 374
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNK---KQDYDGFFYSLFQKR 137
S+ EE+ +Q + F + D+ + P V ++ DGFFY+ K+
Sbjct: 375 SVLPEENSQQILAFLQRTPDATLTGTGTPAQPGVQNLPGAEEGDGFFYAKLIKK 428
>gi|330861821|emb|CBX71993.1| hypothetical protein YEW_HY35310 [Yersinia enterocolitica W22703]
Length = 131
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 77/120 (64%), Gaps = 9/120 (7%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
++ FDRIL D PC+ +GV+RR+PDI WLRR +DI +L++ +I+ +W LK GG +++
Sbjct: 15 DQQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELAQLQSEIIEAIWPKLKKGGVMVY 74
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSI-----RLNSPG-QLLPTVNKKQDYDGFFYSLFQKR 137
TCS+ EE+++Q F + H ++ +++PG Q LP +D DGF+Y+ KR
Sbjct: 75 ATCSILPEENQQQIATFLQRHSEADLVETGTVSAPGKQNLP---HPEDGDGFYYAKLIKR 131
>gi|389839361|ref|YP_006341445.1| 16S rRNA methyltransferase B [Cronobacter sakazakii ES15]
gi|387849837|gb|AFJ97934.1| 16S rRNA methyltransferase B [Cronobacter sakazakii ES15]
Length = 462
Score = 99.4 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 52/117 (44%), Positives = 71/117 (60%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR +DI +L++ +IL+ +W LKPGG LL+ TC
Sbjct: 349 FDRILLDAPCSATGVIRRHPDIKWLRRDSDINELAQLQSEILDAIWPHLKPGGTLLYATC 408
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----RLNSPG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ EQ F D+ +PG Q LP + DGFFY+ K+
Sbjct: 409 SVLPEENSEQIRAFLSRTPDAQLDGTGSTQTPGIQNLPGAIEG---DGFFYAKLIKK 462
>gi|213419467|ref|ZP_03352533.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhi str. E01-6750]
Length = 207
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 79/132 (59%), Gaps = 9/132 (6%)
Query: 13 KKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNN 70
K+ + R+ ++ + FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+
Sbjct: 78 KQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDA 137
Query: 71 LWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSI-----RLNSPGQLLPTVNKKQD 125
+W LKPGG L++ TCS+ EE+ +Q F + D+ + PGQ + ++
Sbjct: 138 VWPRLKPGGTLVYATCSVLPEENRDQIKAFLQRTPDAALSETGTPDQPGQQ--NLPGGEE 195
Query: 126 YDGFFYSLFQKR 137
DGFFY+ K+
Sbjct: 196 GDGFFYAKLIKK 207
>gi|145300988|ref|YP_001143829.1| ribosomal RNA small subunit methyltransferase B [Aeromonas
salmonicida subsp. salmonicida A449]
gi|418362668|ref|ZP_12963294.1| 16S rRNA methyltransferase B [Aeromonas salmonicida subsp.
salmonicida 01-B526]
gi|142853760|gb|ABO92081.1| ribosomal RNA small subunit methyltransferase B [Aeromonas
salmonicida subsp. salmonicida A449]
gi|356686117|gb|EHI50728.1| 16S rRNA methyltransferase B [Aeromonas salmonicida subsp.
salmonicida 01-B526]
Length = 430
Score = 99.4 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 50/117 (42%), Positives = 68/117 (58%), Gaps = 6/117 (5%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI++L++ +IL LW LK GG LL+ TC
Sbjct: 314 FDRILLDAPCSATGVIRRHPDIKWLRRDQDIRELAELQRRILIALWSKLKSGGTLLYATC 373
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQ------DYDGFFYSLFQKR 137
S+ EE+ EQ F D+ + Q P +Q + DGF+Y+ KR
Sbjct: 374 SVLPEENREQIRAFLATTPDATLVPLHAQDTPDCPGRQFLPGEAEMDGFYYAKLIKR 430
>gi|444354432|ref|YP_007390576.1| Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-)
[Enterobacter aerogenes EA1509E]
gi|443905262|emb|CCG33036.1| Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-)
[Enterobacter aerogenes EA1509E]
Length = 431
Score = 99.4 bits (246), Expect = 5e-19, Method: Composition-based stats.
Identities = 50/121 (41%), Positives = 74/121 (61%), Gaps = 9/121 (7%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
++ FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ W LKPGG L++
Sbjct: 313 DEQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDATWAHLKPGGTLVY 372
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSI-----RLNSPGQL-LPTVNKKQDYDGFFYSLFQKR 137
TCS+ EE+ +Q F +D+ +PGQ LP ++ DGFFY+ K+
Sbjct: 373 ATCSILPEENSQQIAAFLTRTRDAELHETGTPETPGQQNLPGA---EEGDGFFYAKLIKK 429
Query: 138 K 138
+
Sbjct: 430 R 430
>gi|383817278|ref|ZP_09972655.1| 16S rRNA methyltransferase B [Serratia sp. M24T3]
gi|383293898|gb|EIC82255.1| 16S rRNA methyltransferase B [Serratia sp. M24T3]
Length = 429
Score = 99.4 bits (246), Expect = 5e-19, Method: Composition-based stats.
Identities = 49/114 (42%), Positives = 69/114 (60%), Gaps = 9/114 (7%)
Query: 25 KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 84
K FD+IL D PC+ +GV+RR+PDI WLRR +DI +L+ +IL +W LKP G L++
Sbjct: 314 KVFDKILLDAPCSATGVIRRHPDIKWLRRDSDITELASLQAEILEAIWPTLKPQGTLVYA 373
Query: 85 TCSLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 132
TCS+ EE+ EQ F H ++ + + PG Q LP N DGF+Y+
Sbjct: 374 TCSILPEENSEQITAFLARHPEARLVETGDIERPGKQNLPDANSG---DGFYYA 424
>gi|88811382|ref|ZP_01126637.1| Fmu, rRNA SAM-dependent methyltransferase [Nitrococcus mobilis
Nb-231]
gi|88791271|gb|EAR22383.1| Fmu, rRNA SAM-dependent methyltransferase [Nitrococcus mobilis
Nb-231]
Length = 423
Score = 99.4 bits (246), Expect = 5e-19, Method: Composition-based stats.
Identities = 47/120 (39%), Positives = 72/120 (60%), Gaps = 13/120 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+G+GV+RR+PDI WLRR +D+ L+ ++LN LW +L GG+L++ TC
Sbjct: 306 FDRILVDAPCSGTGVIRRHPDIKWLRRPSDLPALAATQQRLLNRLWPLLSSGGRLIYATC 365
Query: 87 SLWFEESEEQAIIFSKNHKDSI----------RLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
S+ E++ F + H D++ L Q+LP ++D DGF+Y+ +K
Sbjct: 366 SVLRAENDAVIESFLRGHGDALVRAPDIPLGRALQFGHQILP---GERDMDGFYYACLEK 422
>gi|330447314|ref|ZP_08310964.1| ribosomal RNA small subunit methyltransferase B [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
gi|328491505|dbj|GAA05461.1| ribosomal RNA small subunit methyltransferase B [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
Length = 426
Score = 99.0 bits (245), Expect = 5e-19, Method: Composition-based stats.
Identities = 49/122 (40%), Positives = 74/122 (60%), Gaps = 8/122 (6%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
+++K FDRIL D PC+ +GV+RR+PDI WLRR DI L+ +I + +W LKPGG
Sbjct: 306 QWWKGDKFDRILLDAPCSATGVIRRHPDIKWLRRGEDIAALATLQAEIFDAMWLQLKPGG 365
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFYSLF 134
L++ TCS+ +E+ +Q F D+ + S PG Q+LP ++ DGF+Y++
Sbjct: 366 TLVYATCSITPQENCDQVKAFLARTLDATLVGSDPAKPGRQILP---GEEAMDGFYYAVL 422
Query: 135 QK 136
K
Sbjct: 423 TK 424
>gi|261213231|ref|ZP_05927513.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. RC341]
gi|260837505|gb|EEX64208.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. RC341]
Length = 426
Score = 99.0 bits (245), Expect = 5e-19, Method: Composition-based stats.
Identities = 48/123 (39%), Positives = 80/123 (65%), Gaps = 8/123 (6%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
++++ + FDRIL D PC+ +GV+RR+PDI WLRR +DI L++ +IL+ +W+ LKPGG
Sbjct: 306 QWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDITALAELQREILDAMWQQLKPGG 365
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFYSLF 134
L++ TCS+ +E+ Q F + ++ + S PG Q+LP ++ DGF+Y++
Sbjct: 366 TLVYATCSITPQENCLQVKAFLERTPEANLVGSDPAQPGRQILP---GEEAMDGFYYAVL 422
Query: 135 QKR 137
K+
Sbjct: 423 SKQ 425
>gi|283788076|ref|YP_003367941.1| ribosomal RNA small subunit methyltransferase B [Citrobacter
rodentium ICC168]
gi|282951530|emb|CBG91229.1| ribosomal RNA small subunit methyltransferase B [Citrobacter
rodentium ICC168]
Length = 429
Score = 99.0 bits (245), Expect = 5e-19, Method: Composition-based stats.
Identities = 47/114 (41%), Positives = 69/114 (60%), Gaps = 3/114 (2%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L+ +IL+ +W LKPGG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAALQAEILDAVWPHLKPGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNK---KQDYDGFFYSLFQKR 137
S+ EE+ +Q F + D+ + LP + ++ DGFFY+ K+
Sbjct: 376 SVLPEENSQQIKAFLQRTADATLSETGTPELPGLQNLPGAEEGDGFFYAKLIKK 429
>gi|261346903|ref|ZP_05974547.1| ribosomal RNA small subunit methyltransferase B [Providencia
rustigianii DSM 4541]
gi|282564970|gb|EFB70505.1| ribosomal RNA small subunit methyltransferase B [Providencia
rustigianii DSM 4541]
Length = 428
Score = 99.0 bits (245), Expect = 5e-19, Method: Composition-based stats.
Identities = 50/116 (43%), Positives = 70/116 (60%), Gaps = 6/116 (5%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR +DI +LS+ +IL +W LKPGG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDSDINELSQLQFQILEAIWPYLKPGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPG---QLLPTVNKKQDYDGFFYSLFQKRKE 139
S+ EE+ Q F H D+ + Q+LP+ DGFFY+ K+ +
Sbjct: 376 SIIPEENSLQIQRFLTKHVDASITDGTEFGLQILPSTTGG---DGFFYARLLKQAQ 428
>gi|423204432|ref|ZP_17190988.1| ribosomal RNA small subunit methyltransferase B [Aeromonas veronii
AMC34]
gi|404627297|gb|EKB24102.1| ribosomal RNA small subunit methyltransferase B [Aeromonas veronii
AMC34]
Length = 430
Score = 99.0 bits (245), Expect = 5e-19, Method: Composition-based stats.
Identities = 52/119 (43%), Positives = 72/119 (60%), Gaps = 12/119 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI++L++ +ILN LW LK GG LL+ TC
Sbjct: 314 FDRILLDAPCSATGVIRRHPDIKWLRRDQDIRELAELQRRILNALWGKLKSGGTLLYATC 373
Query: 87 SLWFEESEEQAIIFSKNHKDSIRL--------NSPG-QLLPTVNKKQDYDGFFYSLFQK 136
S+ EE+ +Q F KD+ + + PG Q LP + + DGF+Y+ K
Sbjct: 374 SVLPEENRDQIRAFLAATKDAKLVPLHEQDTPDCPGRQFLP---GEAEMDGFYYAKLVK 429
>gi|56415328|ref|YP_152403.1| 16S rRNA methyltransferase GidB [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|197364258|ref|YP_002143895.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|81360778|sp|Q5PIT6.1|RSMB_SALPA RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|224493266|sp|B5BGV5.1|RSMB_SALPK RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|56129585|gb|AAV79091.1| sun protein [Salmonella enterica subsp. enterica serovar Paratyphi
A str. ATCC 9150]
gi|197095735|emb|CAR61305.1| sun protein [Salmonella enterica subsp. enterica serovar Paratyphi
A str. AKU_12601]
Length = 429
Score = 99.0 bits (245), Expect = 5e-19, Method: Composition-based stats.
Identities = 48/116 (41%), Positives = 71/116 (61%), Gaps = 7/116 (6%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LKPGG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDTVWPRLKPGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----RLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ +Q F + D+ + PGQ + ++ DGFFY+ K+
Sbjct: 376 SVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQ--QNLPGGEEGDGFFYAKLIKK 429
>gi|336247455|ref|YP_004591165.1| 16S rRNA methyltransferase B [Enterobacter aerogenes KCTC 2190]
gi|334733511|gb|AEG95886.1| 16S rRNA methyltransferase B [Enterobacter aerogenes KCTC 2190]
Length = 431
Score = 99.0 bits (245), Expect = 5e-19, Method: Composition-based stats.
Identities = 50/121 (41%), Positives = 74/121 (61%), Gaps = 9/121 (7%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
++ FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ W LKPGG L++
Sbjct: 313 DEQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDATWAHLKPGGTLVY 372
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSI-----RLNSPGQL-LPTVNKKQDYDGFFYSLFQKR 137
TCS+ EE+ +Q F +D+ +PGQ LP ++ DGFFY+ K+
Sbjct: 373 ATCSILPEENSQQIAAFLTRTQDAELHETGTPETPGQQNLPGA---EEGDGFFYAKLIKK 429
Query: 138 K 138
+
Sbjct: 430 R 430
>gi|423203174|ref|ZP_17189752.1| ribosomal RNA small subunit methyltransferase B [Aeromonas veronii
AER39]
gi|404613403|gb|EKB10425.1| ribosomal RNA small subunit methyltransferase B [Aeromonas veronii
AER39]
Length = 430
Score = 99.0 bits (245), Expect = 5e-19, Method: Composition-based stats.
Identities = 52/119 (43%), Positives = 72/119 (60%), Gaps = 12/119 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI++L++ +ILN LW LK GG LL+ TC
Sbjct: 314 FDRILLDAPCSATGVIRRHPDIKWLRRDQDIRELAELQRRILNALWGKLKSGGTLLYATC 373
Query: 87 SLWFEESEEQAIIFSKNHKDSIRL--------NSPG-QLLPTVNKKQDYDGFFYSLFQK 136
S+ EE+ +Q F KD+ + + PG Q LP + + DGF+Y+ K
Sbjct: 374 SVLPEENRDQIRAFLAATKDAKLVPLHEQDTPDCPGRQFLP---GEAEMDGFYYAKLVK 429
>gi|229845581|ref|ZP_04465708.1| sun protein [Haemophilus influenzae 6P18H1]
gi|229811516|gb|EEP47218.1| sun protein [Haemophilus influenzae 6P18H1]
Length = 450
Score = 99.0 bits (245), Expect = 5e-19, Method: Composition-based stats.
Identities = 53/120 (44%), Positives = 71/120 (59%), Gaps = 12/120 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR++ DI +L + KIL+ LW+ LKP G LL+ TC
Sbjct: 333 FDRILLDAPCSATGVIRRHPDIKWLRKETDIAQLVELQKKILSALWEKLKPNGVLLYATC 392
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSP---------GQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ EQ F H D+ L+ P Q +P N DGF+Y+ KR
Sbjct: 393 SVLPEENCEQIQAFLNAHADAELLSLPFSDDKSAVGFQFIPQPNSG---DGFYYAKLLKR 449
>gi|145635940|ref|ZP_01791626.1| methionyl-tRNA formyltransferase [Haemophilus influenzae PittAA]
gi|145266799|gb|EDK06817.1| methionyl-tRNA formyltransferase [Haemophilus influenzae PittAA]
Length = 451
Score = 99.0 bits (245), Expect = 5e-19, Method: Composition-based stats.
Identities = 53/120 (44%), Positives = 71/120 (59%), Gaps = 12/120 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR++ DI +L + KIL+ LW+ LKP G LL+ TC
Sbjct: 333 FDRILLDAPCSATGVIRRHPDIKWLRKETDIAQLVELQKKILSALWEKLKPNGVLLYATC 392
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSP---------GQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ EQ F H D+ L+ P Q +P N DGF+Y+ KR
Sbjct: 393 SVLPEENCEQIQAFLNAHADAELLSLPFSDDKSAVGFQFIPQPNSG---DGFYYAKLLKR 449
>gi|262402050|ref|ZP_06078614.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. RC586]
gi|262351696|gb|EEZ00828.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. RC586]
Length = 426
Score = 99.0 bits (245), Expect = 5e-19, Method: Composition-based stats.
Identities = 48/122 (39%), Positives = 79/122 (64%), Gaps = 8/122 (6%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+++++ FDRIL D PC+ +GV+RR+PDI WLRR DI L++ +IL+ +W+ LKPGG
Sbjct: 307 WWQDEQFDRILLDAPCSATGVIRRHPDIKWLRRAEDIPALAELQREILDAMWQQLKPGGT 366
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFYSLFQ 135
L++ TCS+ +E+ Q F + ++ + S PG Q+LP ++ DGF+Y++
Sbjct: 367 LVYATCSITPQENCLQVKAFLERTPEASLVGSDPAQPGRQILP---GEEAMDGFYYAVLS 423
Query: 136 KR 137
K+
Sbjct: 424 KQ 425
>gi|437822755|ref|ZP_20843465.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. SARB17]
gi|435306473|gb|ELO81763.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. SARB17]
Length = 429
Score = 99.0 bits (245), Expect = 5e-19, Method: Composition-based stats.
Identities = 48/116 (41%), Positives = 71/116 (61%), Gaps = 7/116 (6%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LKPGG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----RLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ +Q F + D+ + PGQ + ++ DGFFY+ K+
Sbjct: 376 SVLPEENRDQIKAFLQRTPDAALSETGTPDQPGQ--QNLPGSEEGDGFFYAKLIKK 429
>gi|168234465|ref|ZP_02659523.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Kentucky str. CDC 191]
gi|194470953|ref|ZP_03076937.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|194457317|gb|EDX46156.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|205331616|gb|EDZ18380.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Kentucky str. CDC 191]
Length = 429
Score = 99.0 bits (245), Expect = 6e-19, Method: Composition-based stats.
Identities = 48/116 (41%), Positives = 72/116 (62%), Gaps = 7/116 (6%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR +DI +L++ +IL+ +W LKPGG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELAQLQAEILDAVWPRLKPGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----RLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ +Q F + D+ + PGQ + ++ DGFFY+ K+
Sbjct: 376 SVLPEENRDQIKAFLQRTPDAALSETGTPDQPGQ--QNLPGGEEGDGFFYAKLIKK 429
>gi|168823234|ref|ZP_02835234.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|205354964|ref|YP_002228765.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|207858650|ref|YP_002245301.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|375125863|ref|ZP_09771027.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Gallinarum str. SG9]
gi|421356757|ref|ZP_15807076.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 622731-39]
gi|421365474|ref|ZP_15815695.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639016-6]
gi|421365561|ref|ZP_15815778.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 640631]
gi|421374528|ref|ZP_15824658.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-0424]
gi|421374608|ref|ZP_15824735.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-6]
gi|421383202|ref|ZP_15833242.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 485549-17]
gi|421387343|ref|ZP_15837345.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-22]
gi|421388561|ref|ZP_15838550.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-70]
gi|421392760|ref|ZP_15842710.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-26]
gi|421400248|ref|ZP_15850137.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-37]
gi|421403429|ref|ZP_15853277.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-46]
gi|421408081|ref|ZP_15857884.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-50]
gi|421412278|ref|ZP_15862036.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-1427]
gi|421418309|ref|ZP_15868013.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-2659]
gi|421419691|ref|ZP_15869379.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 78-1757]
gi|421428046|ref|ZP_15877662.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22510-1]
gi|421432545|ref|ZP_15882115.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 8b-1]
gi|421437141|ref|ZP_15886664.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648905 5-18]
gi|421441584|ref|ZP_15891051.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 6-18]
gi|421445490|ref|ZP_15894915.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-3079]
gi|421450096|ref|ZP_15899474.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 58-6482]
gi|436592462|ref|ZP_20512220.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22704]
gi|436793002|ref|ZP_20521622.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE30663]
gi|436796409|ref|ZP_20522834.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS44]
gi|436810102|ref|ZP_20529319.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1882]
gi|436812095|ref|ZP_20530752.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1884]
gi|436846464|ref|ZP_20539301.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1594]
gi|436848345|ref|ZP_20540052.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1566]
gi|436854763|ref|ZP_20544227.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1580]
gi|436861649|ref|ZP_20548664.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1543]
gi|436874394|ref|ZP_20556947.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1441]
gi|436883847|ref|ZP_20562091.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1810]
gi|436890479|ref|ZP_20565808.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1558]
gi|436892218|ref|ZP_20566646.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1018]
gi|436903382|ref|ZP_20573804.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1010]
gi|436907861|ref|ZP_20575617.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1729]
gi|436921646|ref|ZP_20583917.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0895]
gi|436929883|ref|ZP_20588452.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0899]
gi|436931789|ref|ZP_20589230.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1457]
gi|436939625|ref|ZP_20593905.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1747]
gi|436949829|ref|ZP_20599603.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0968]
gi|436965072|ref|ZP_20606467.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1444]
gi|436975468|ref|ZP_20611605.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1445]
gi|436988811|ref|ZP_20616320.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1565]
gi|437011584|ref|ZP_20624552.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1808]
gi|437019118|ref|ZP_20626989.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1811]
gi|437034169|ref|ZP_20632909.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0956]
gi|437046800|ref|ZP_20638593.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1455]
gi|437052920|ref|ZP_20642201.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1575]
gi|437055213|ref|ZP_20643419.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1725]
gi|437062838|ref|ZP_20647726.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1745]
gi|437077273|ref|ZP_20655429.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1791]
gi|437085885|ref|ZP_20660309.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1795]
gi|437096194|ref|ZP_20664812.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 576709]
gi|437102111|ref|ZP_20666428.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 635290-58]
gi|437121912|ref|ZP_20671998.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-16]
gi|437130190|ref|ZP_20676484.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-19]
gi|437138297|ref|ZP_20680907.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-2]
gi|437147454|ref|ZP_20686844.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-9]
gi|437156075|ref|ZP_20692033.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629163]
gi|437160448|ref|ZP_20694633.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE15-1]
gi|437164664|ref|ZP_20697246.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_N202]
gi|437179347|ref|ZP_20705326.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_56-3991]
gi|437180964|ref|ZP_20706283.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_76-3618]
gi|437206889|ref|ZP_20712583.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13183-1]
gi|437263674|ref|ZP_20719620.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_81-2490]
gi|437268880|ref|ZP_20722194.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL909]
gi|437279821|ref|ZP_20727807.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL913]
gi|437289696|ref|ZP_20731129.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_69-4941]
gi|437305337|ref|ZP_20734212.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 638970-15]
gi|437324949|ref|ZP_20739968.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 17927]
gi|437343418|ref|ZP_20745782.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS4]
gi|437384628|ref|ZP_20750612.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22558]
gi|437412487|ref|ZP_20753377.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 22-17]
gi|437442480|ref|ZP_20757866.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 40-18]
gi|437462136|ref|ZP_20762529.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 1-1]
gi|437471821|ref|ZP_20765326.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 4-1]
gi|437496227|ref|ZP_20773167.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642046 4-7]
gi|437501620|ref|ZP_20774376.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648898 4-5]
gi|437544068|ref|ZP_20782786.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648899 3-17]
gi|437560370|ref|ZP_20786015.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648900 1-16]
gi|437574285|ref|ZP_20789690.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 1-17]
gi|437585629|ref|ZP_20792986.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 39-2]
gi|437599168|ref|ZP_20796815.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648902 6-8]
gi|437618307|ref|ZP_20803108.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648903 1-6]
gi|437635200|ref|ZP_20807096.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648904 3-6]
gi|437664880|ref|ZP_20814455.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 653049 13-19]
gi|437686063|ref|ZP_20819277.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 8-1]
gi|437700768|ref|ZP_20823940.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 9-7]
gi|437717808|ref|ZP_20828406.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 42-20]
gi|437737175|ref|ZP_20832907.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 16-16]
gi|437796276|ref|ZP_20837578.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 76-2651]
gi|437803235|ref|ZP_20838524.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 33944]
gi|437917377|ref|ZP_20850553.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 6.0562-1]
gi|438094311|ref|ZP_20861646.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 81-2625]
gi|438104927|ref|ZP_20866082.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 62-1976]
gi|438113844|ref|ZP_20869783.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 53-407]
gi|445135321|ref|ZP_21383160.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9184]
gi|445174210|ref|ZP_21396995.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE8a]
gi|445181043|ref|ZP_21398227.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 20037]
gi|445232941|ref|ZP_21406220.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE10]
gi|445250378|ref|ZP_21408809.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 436]
gi|445336417|ref|ZP_21415708.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 18569]
gi|445348657|ref|ZP_21419686.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13-1]
gi|445364223|ref|ZP_21424887.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. PT23]
gi|224493261|sp|B5R1E5.1|RSMB_SALEP RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|224493262|sp|B5RH47.1|RSMB_SALG2 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|205274745|emb|CAR39801.1| sun protein [Salmonella enterica subsp. enterica serovar Gallinarum
str. 287/91]
gi|205340499|gb|EDZ27263.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|206710453|emb|CAR34811.1| sun protein [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|326630113|gb|EGE36456.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Gallinarum str. SG9]
gi|395980541|gb|EJH89765.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639016-6]
gi|395993171|gb|EJI02271.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 622731-39]
gi|395993263|gb|EJI02359.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 640631]
gi|395994046|gb|EJI03128.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-0424]
gi|395995962|gb|EJI05019.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 485549-17]
gi|396007728|gb|EJI16672.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-6]
gi|396009569|gb|EJI18494.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-22]
gi|396020060|gb|EJI28909.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-70]
gi|396020082|gb|EJI28930.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-26]
gi|396024170|gb|EJI32958.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-37]
gi|396028928|gb|EJI37680.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-46]
gi|396028993|gb|EJI37743.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-50]
gi|396038533|gb|EJI47169.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-2659]
gi|396043170|gb|EJI51783.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-1427]
gi|396047999|gb|EJI56565.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 78-1757]
gi|396049539|gb|EJI58078.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 8b-1]
gi|396050076|gb|EJI58609.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22510-1]
gi|396050753|gb|EJI59274.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648905 5-18]
gi|396063458|gb|EJI71850.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 6-18]
gi|396065083|gb|EJI73462.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-3079]
gi|396067915|gb|EJI76268.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 58-6482]
gi|434955824|gb|ELL49623.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE30663]
gi|434961541|gb|ELL54822.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS44]
gi|434965787|gb|ELL58705.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1882]
gi|434976582|gb|ELL68806.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1884]
gi|434977775|gb|ELL69867.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1594]
gi|434978407|gb|ELL70441.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22704]
gi|434990716|gb|ELL82253.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1566]
gi|434993780|gb|ELL85178.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1580]
gi|434997008|gb|ELL88290.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1441]
gi|435000437|gb|ELL91584.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1543]
gi|435001206|gb|ELL92326.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1810]
gi|435006517|gb|ELL97405.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1558]
gi|435018781|gb|ELM09238.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1010]
gi|435021394|gb|ELM11768.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1018]
gi|435025055|gb|ELM15236.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0895]
gi|435030726|gb|ELM20733.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1729]
gi|435032912|gb|ELM22830.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0899]
gi|435044616|gb|ELM34292.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1457]
gi|435047403|gb|ELM36991.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1444]
gi|435047464|gb|ELM37046.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1747]
gi|435049699|gb|ELM39215.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1445]
gi|435053028|gb|ELM42501.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0968]
gi|435064695|gb|ELM53816.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1808]
gi|435071968|gb|ELM60902.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1565]
gi|435076254|gb|ELM65040.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0956]
gi|435077206|gb|ELM65964.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1455]
gi|435080593|gb|ELM69269.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1811]
gi|435089818|gb|ELM78232.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1575]
gi|435098984|gb|ELM87208.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1725]
gi|435103562|gb|ELM91642.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1791]
gi|435103614|gb|ELM91691.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1745]
gi|435104139|gb|ELM92210.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1795]
gi|435108145|gb|ELM96113.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 576709]
gi|435123136|gb|ELN10633.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 635290-58]
gi|435124380|gb|ELN11839.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-16]
gi|435125888|gb|ELN13315.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-19]
gi|435133294|gb|ELN20462.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-2]
gi|435133889|gb|ELN21035.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-9]
gi|435137332|gb|ELN24398.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629163]
gi|435147262|gb|ELN34035.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE15-1]
gi|435151134|gb|ELN37788.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_56-3991]
gi|435154762|gb|ELN41326.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_N202]
gi|435160587|gb|ELN46856.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_81-2490]
gi|435166961|gb|ELN52908.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_76-3618]
gi|435170789|gb|ELN56520.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL913]
gi|435173464|gb|ELN58973.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL909]
gi|435182285|gb|ELN67311.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_69-4941]
gi|435187392|gb|ELN72159.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 638970-15]
gi|435192145|gb|ELN76696.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS4]
gi|435193200|gb|ELN77682.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 17927]
gi|435201729|gb|ELN85614.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22558]
gi|435203299|gb|ELN87060.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 22-17]
gi|435206292|gb|ELN89833.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13183-1]
gi|435211439|gb|ELN94553.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 40-18]
gi|435219627|gb|ELO01972.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 1-1]
gi|435226175|gb|ELO07760.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642046 4-7]
gi|435226746|gb|ELO08302.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 4-1]
gi|435234477|gb|ELO15334.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648899 3-17]
gi|435238493|gb|ELO19126.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648898 4-5]
gi|435238514|gb|ELO19146.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648900 1-16]
gi|435245934|gb|ELO25961.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 1-17]
gi|435259395|gb|ELO38620.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648903 1-6]
gi|435261339|gb|ELO40495.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 39-2]
gi|435263562|gb|ELO42607.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648902 6-8]
gi|435265430|gb|ELO44283.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 653049 13-19]
gi|435266838|gb|ELO45566.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 8-1]
gi|435273496|gb|ELO51763.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 9-7]
gi|435280679|gb|ELO58374.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648904 3-6]
gi|435284153|gb|ELO61656.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 42-20]
gi|435284884|gb|ELO62302.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 16-16]
gi|435290679|gb|ELO67584.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 76-2651]
gi|435303500|gb|ELO79374.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 33944]
gi|435314652|gb|ELO88046.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 81-2625]
gi|435314697|gb|ELO88088.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 6.0562-1]
gi|435321884|gb|ELO94232.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 62-1976]
gi|435329260|gb|ELP00706.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 53-407]
gi|444845833|gb|ELX71017.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9184]
gi|444859294|gb|ELX84245.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE8a]
gi|444861825|gb|ELX86696.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE10]
gi|444871866|gb|ELX96256.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 20037]
gi|444873961|gb|ELX98231.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 18569]
gi|444876037|gb|ELY00226.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13-1]
gi|444883295|gb|ELY07187.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. PT23]
gi|444889739|gb|ELY13142.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. 436]
Length = 429
Score = 99.0 bits (245), Expect = 6e-19, Method: Composition-based stats.
Identities = 48/116 (41%), Positives = 71/116 (61%), Gaps = 7/116 (6%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LKPGG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----RLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ +Q F + D+ + PGQ + ++ DGFFY+ K+
Sbjct: 376 SVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQ--QNLPGGEEGDGFFYAKLIKK 429
>gi|417841175|ref|ZP_12487280.1| Ribosomal RNA small subunit methyltransferase B [Haemophilus
haemolyticus M19501]
gi|417841949|ref|ZP_12488044.1| Ribosomal RNA small subunit methyltransferase B [Haemophilus
haemolyticus M19501]
gi|341947729|gb|EGT74370.1| Ribosomal RNA small subunit methyltransferase B [Haemophilus
haemolyticus M19501]
gi|341949769|gb|EGT76370.1| Ribosomal RNA small subunit methyltransferase B [Haemophilus
haemolyticus M19501]
Length = 451
Score = 99.0 bits (245), Expect = 6e-19, Method: Composition-based stats.
Identities = 53/120 (44%), Positives = 71/120 (59%), Gaps = 12/120 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR++ DI +L + KIL+ LW+ LKP G LL+ TC
Sbjct: 333 FDRILLDAPCSATGVIRRHPDIKWLRKETDIAQLVELQKKILSALWEKLKPNGVLLYATC 392
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSP---------GQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ EQ F H D+ L+ P Q +P N DGF+Y+ KR
Sbjct: 393 SVLPEENCEQIQAFLNAHADAELLSLPFSDDKSAVGFQFIPQPNSG---DGFYYAKLLKR 449
>gi|16272567|ref|NP_438784.1| sun protein [Haemophilus influenzae Rd KW20]
gi|260581533|ref|ZP_05849340.1| ribosomal RNA small subunit methyltransferase B [Haemophilus
influenzae RdAW]
gi|1169716|sp|P44788.1|RSMB_HAEIN RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|1573620|gb|AAC22284.1| sun protein (sun) [Haemophilus influenzae Rd KW20]
gi|260091807|gb|EEW75763.1| ribosomal RNA small subunit methyltransferase B [Haemophilus
influenzae RdAW]
Length = 451
Score = 99.0 bits (245), Expect = 6e-19, Method: Composition-based stats.
Identities = 53/120 (44%), Positives = 71/120 (59%), Gaps = 12/120 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR++ DI +L + KIL+ LW+ LKP G LL+ TC
Sbjct: 333 FDRILLDAPCSATGVIRRHPDIKWLRKETDIAQLVELQKKILSALWEKLKPNGVLLYATC 392
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSP---------GQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ EQ F H D+ L+ P Q +P N DGF+Y+ KR
Sbjct: 393 SVLPEENCEQIQAFLNAHADAELLSLPFSDDKSAVGFQFIPQPNSG---DGFYYAKLLKR 449
>gi|418515110|ref|ZP_13081298.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Pomona str. ATCC 10729]
gi|366077149|gb|EHN41169.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Pomona str. ATCC 10729]
Length = 429
Score = 99.0 bits (245), Expect = 6e-19, Method: Composition-based stats.
Identities = 48/116 (41%), Positives = 71/116 (61%), Gaps = 7/116 (6%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LKPGG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELTQLQAEILDAVWPRLKPGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----RLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ +Q F + D+ + PGQ + ++ DGFFY+ K+
Sbjct: 376 SILPEENRDQIKAFLQRTPDAALSETGTPDQPGQ--QNLPGGEEGDGFFYAKLIKK 429
>gi|409247120|ref|YP_006887820.1| Ribosomal RNA small subunit methyltransferase B rRNA
(cytosine-C(5)-)-methyltransferase; 16S rRNA m5C967
methyltransferase [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|320087854|emb|CBY97617.1| Ribosomal RNA small subunit methyltransferase B rRNA
(cytosine-C(5)-)-methyltransferase; 16S rRNA m5C967
methyltransferase [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
Length = 429
Score = 99.0 bits (245), Expect = 6e-19, Method: Composition-based stats.
Identities = 48/116 (41%), Positives = 71/116 (61%), Gaps = 7/116 (6%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LKPGG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----RLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ +Q F + D+ + PGQ + ++ DGFFY+ K+
Sbjct: 376 SVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQ--QNLPGGEEGDGFFYAKLIKK 429
>gi|168245235|ref|ZP_02670167.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
gi|168468035|ref|ZP_02701872.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|194447684|ref|YP_002047433.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|200388990|ref|ZP_03215602.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|386593085|ref|YP_006089485.1| Ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Heidelberg str. B182]
gi|418760133|ref|ZP_13316294.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35185]
gi|418767911|ref|ZP_13323967.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35199]
gi|418768863|ref|ZP_13324905.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21539]
gi|418782104|ref|ZP_13337971.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35188]
gi|418784162|ref|ZP_13340000.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21559]
gi|418802084|ref|ZP_13357715.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35202]
gi|419730652|ref|ZP_14257587.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41579]
gi|419734817|ref|ZP_14261701.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41563]
gi|419741486|ref|ZP_14268178.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41573]
gi|419743267|ref|ZP_14269932.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41566]
gi|419750258|ref|ZP_14276722.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41565]
gi|419787946|ref|ZP_14313647.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. Levine 1]
gi|419794886|ref|ZP_14320492.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. Levine 15]
gi|421571760|ref|ZP_16017428.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00322]
gi|421575475|ref|ZP_16021088.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00325]
gi|421578888|ref|ZP_16024458.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00326]
gi|421586045|ref|ZP_16031528.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00328]
gi|224493263|sp|B4TJX9.1|RSMB_SALHS RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|194405988|gb|ACF66207.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL476]
gi|195628892|gb|EDX48302.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|199606088|gb|EDZ04633.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|205336021|gb|EDZ22785.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
gi|381291396|gb|EIC32638.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41573]
gi|381293042|gb|EIC34214.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41579]
gi|381295638|gb|EIC36747.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41563]
gi|381307326|gb|EIC48184.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41565]
gi|381311752|gb|EIC52562.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41566]
gi|383800126|gb|AFH47208.1| Ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Heidelberg str. B182]
gi|392613594|gb|EIW96049.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. Levine 15]
gi|392618644|gb|EIX01039.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. Levine 1]
gi|392732701|gb|EIZ89908.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35199]
gi|392741484|gb|EIZ98584.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21539]
gi|392743802|gb|EJA00868.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35185]
gi|392744702|gb|EJA01746.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35188]
gi|392754506|gb|EJA11422.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21559]
gi|392778587|gb|EJA35259.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35202]
gi|402519315|gb|EJW26677.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00322]
gi|402522515|gb|EJW29839.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00325]
gi|402522859|gb|EJW30178.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00326]
gi|402528770|gb|EJW36019.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00328]
Length = 429
Score = 99.0 bits (245), Expect = 6e-19, Method: Composition-based stats.
Identities = 48/116 (41%), Positives = 71/116 (61%), Gaps = 7/116 (6%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LKPGG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----RLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ +Q F + D+ + PGQ + ++ DGFFY+ K+
Sbjct: 376 SVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQ--QNLPGGEEGDGFFYAKLIKK 429
>gi|319775433|ref|YP_004137921.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Haemophilus
influenzae F3047]
gi|317450024|emb|CBY86238.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Haemophilus
influenzae F3047]
Length = 451
Score = 98.6 bits (244), Expect = 6e-19, Method: Composition-based stats.
Identities = 53/120 (44%), Positives = 71/120 (59%), Gaps = 12/120 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR++ DI +L + KIL+ LW+ LKP G LL+ TC
Sbjct: 333 FDRILLDAPCSATGVIRRHPDIKWLRKETDIAQLVELQKKILSALWEKLKPNGVLLYATC 392
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSP---------GQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ EQ F H D+ L+ P Q +P N DGF+Y+ KR
Sbjct: 393 SVLPEENYEQIQEFLNAHADAELLSLPFSDDTSAVGFQFIPQPNSG---DGFYYAKLLKR 449
>gi|238913877|ref|ZP_04657714.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Tennessee str. CDC07-0191]
Length = 429
Score = 98.6 bits (244), Expect = 6e-19, Method: Composition-based stats.
Identities = 48/116 (41%), Positives = 71/116 (61%), Gaps = 7/116 (6%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LKPGG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----RLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ +Q F + D+ + PGQ + ++ DGFFY+ K+
Sbjct: 376 SVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQ--QNLPGGEEGDGFFYAKLIKK 429
>gi|86147131|ref|ZP_01065447.1| Sun protein [Vibrio sp. MED222]
gi|218711000|ref|YP_002418621.1| ribosomal RNA small subunit methyltransferase B [Vibrio splendidus
LGP32]
gi|85835015|gb|EAQ53157.1| Sun protein [Vibrio sp. MED222]
gi|218324019|emb|CAV20381.1| Ribosomal RNA small subunit methyltransferase B [Vibrio splendidus
LGP32]
Length = 426
Score = 98.6 bits (244), Expect = 6e-19, Method: Composition-based stats.
Identities = 47/122 (38%), Positives = 78/122 (63%), Gaps = 8/122 (6%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ FDRIL D PC+ +GV+RR+PDI WLRR +DI L++ +IL+ +W+ LK GG
Sbjct: 307 WWTGSQFDRILLDAPCSATGVIRRHPDIKWLRRASDIDALAELQSEILDAMWRQLKEGGT 366
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFYSLFQ 135
+++ TCS+ +E+ Q F + +++ + S PG Q+LP ++D DGF+Y++
Sbjct: 367 MVYATCSITPQENVLQVKAFLERTENATLVGSDIEKPGRQILP---GEEDMDGFYYAVLV 423
Query: 136 KR 137
K+
Sbjct: 424 KQ 425
>gi|84393439|ref|ZP_00992196.1| Sun protein [Vibrio splendidus 12B01]
gi|84375955|gb|EAP92845.1| Sun protein [Vibrio splendidus 12B01]
Length = 426
Score = 98.6 bits (244), Expect = 6e-19, Method: Composition-based stats.
Identities = 47/122 (38%), Positives = 78/122 (63%), Gaps = 8/122 (6%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ FDRIL D PC+ +GV+RR+PDI WLRR +DI L++ +IL+ +W+ LK GG
Sbjct: 307 WWTGSQFDRILLDAPCSATGVIRRHPDIKWLRRASDIDALAELQSEILDAMWRQLKEGGT 366
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFYSLFQ 135
+++ TCS+ +E+ Q F + +++ + S PG Q+LP ++D DGF+Y++
Sbjct: 367 MVYATCSITPQENVLQVKAFLERTENATLVGSDIEKPGRQILP---GEEDMDGFYYAVLV 423
Query: 136 KR 137
K+
Sbjct: 424 KQ 425
>gi|436984153|ref|ZP_20614366.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1559]
gi|435064359|gb|ELM53492.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1559]
Length = 402
Score = 98.6 bits (244), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 79/132 (59%), Gaps = 9/132 (6%)
Query: 13 KKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNN 70
K+ + R+ ++ + FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+
Sbjct: 273 KQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDA 332
Query: 71 LWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSI-----RLNSPGQLLPTVNKKQD 125
+W LKPGG L++ TCS+ EE+ +Q F + D+ + PGQ + ++
Sbjct: 333 VWPRLKPGGTLVYATCSVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQQ--NLPGGEE 390
Query: 126 YDGFFYSLFQKR 137
DGFFY+ K+
Sbjct: 391 GDGFFYAKLIKK 402
>gi|333906416|ref|YP_004480002.1| sun protein [Marinomonas posidonica IVIA-Po-181]
gi|333476422|gb|AEF53083.1| sun protein [Marinomonas posidonica IVIA-Po-181]
Length = 459
Score = 98.6 bits (244), Expect = 6e-19, Method: Composition-based stats.
Identities = 56/133 (42%), Positives = 77/133 (57%), Gaps = 20/133 (15%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ N+ +D+IL D+PC+ +GV+RRNPDI R+ DI++L +ILN +W LKP G
Sbjct: 328 WWDNQAYDKILLDVPCSATGVIRRNPDIKLNRKPADIEELIVIQKQILNKVWATLKPNGY 387
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDS--IRLN--------------SPG-QLLPTVNKK 123
LL+ TCSL EE+E+Q F D+ I+LN S G QL PT+N
Sbjct: 388 LLYATCSLMPEENEQQIAAFLSEQSDASEIKLNHLNANLSLNWGLEVSHGKQLFPTLNGN 447
Query: 124 QDYDGFFYSLFQK 136
DGF+Y L QK
Sbjct: 448 ---DGFYYCLLQK 457
>gi|323496958|ref|ZP_08101986.1| 16S rRNA methyltransferase B [Vibrio sinaloensis DSM 21326]
gi|323318032|gb|EGA71015.1| 16S rRNA methyltransferase B [Vibrio sinaloensis DSM 21326]
Length = 426
Score = 98.6 bits (244), Expect = 7e-19, Method: Composition-based stats.
Identities = 47/122 (38%), Positives = 78/122 (63%), Gaps = 8/122 (6%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRIL D PC+ +GV+RR+PDI WLRR NDI L++ +I++ +W LK GG
Sbjct: 307 WWSGEKFDRILLDAPCSATGVIRRHPDIKWLRRANDIDALAELQSEIMDAMWGQLKDGGT 366
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFYSLFQ 135
+++ TCS+ +E+ Q F + +++ + S PG Q+LP ++D DGF+Y++
Sbjct: 367 MVYATCSITPQENILQVKAFLERTQNATLVGSDIENPGRQILP---GEEDMDGFYYAVLV 423
Query: 136 KR 137
K+
Sbjct: 424 KQ 425
>gi|319897839|ref|YP_004136036.1| 16S rRNA m5c967 methyltransferase,
s-adenosyl-l-methionine-dependent [Haemophilus
influenzae F3031]
gi|317433345|emb|CBY81723.1| 16S rRNA m5C967 methyltransferase,S-adenosyl-L-methionine-dependent
[Haemophilus influenzae F3031]
Length = 451
Score = 98.6 bits (244), Expect = 7e-19, Method: Composition-based stats.
Identities = 53/120 (44%), Positives = 71/120 (59%), Gaps = 12/120 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR++ DI +L + KIL+ LW+ LKP G LL+ TC
Sbjct: 333 FDRILLDAPCSATGVIRRHPDIKWLRKETDIAQLVELQKKILSALWEKLKPNGVLLYATC 392
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSP---------GQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ EQ F H D+ L+ P Q +P N DGF+Y+ KR
Sbjct: 393 SVLPEENYEQIQEFLNAHADAELLSLPFSDDTSAVGFQFIPQPNSG---DGFYYAKLLKR 449
>gi|417842407|ref|ZP_12488493.1| Ribosomal RNA small subunit methyltransferase B [Haemophilus
haemolyticus M21127]
gi|341951698|gb|EGT78256.1| Ribosomal RNA small subunit methyltransferase B [Haemophilus
haemolyticus M21127]
Length = 450
Score = 98.6 bits (244), Expect = 7e-19, Method: Composition-based stats.
Identities = 53/119 (44%), Positives = 71/119 (59%), Gaps = 12/119 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR++ DI +L + KIL+ LW+ LKP G LL+VTC
Sbjct: 333 FDRILLDAPCSATGVIRRHPDIKWLRKETDIAQLVELQKKILSALWEKLKPNGVLLYVTC 392
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSP---------GQLLPTVNKKQDYDGFFYSLFQK 136
S+ EE+ EQ F H D+ L P Q +P N DGF+Y+ +K
Sbjct: 393 SVLPEENCEQIQAFLNAHSDAELLPLPFSDDNSAVGFQFIPQPNSG---DGFYYAKLRK 448
>gi|213584492|ref|ZP_03366318.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhi str. E98-0664]
Length = 364
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 79/132 (59%), Gaps = 9/132 (6%)
Query: 13 KKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNN 70
K+ + R+ ++ + FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+
Sbjct: 235 KQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDA 294
Query: 71 LWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSI-----RLNSPGQLLPTVNKKQD 125
+W LKPGG L++ TCS+ EE+ +Q F + D+ + PGQ + ++
Sbjct: 295 VWPRLKPGGTLVYATCSVLPEENRDQIKAFLQRTPDAALSETGTPDQPGQQ--NLPGGEE 352
Query: 126 YDGFFYSLFQKR 137
DGFFY+ K+
Sbjct: 353 GDGFFYAKLIKK 364
>gi|117618823|ref|YP_854784.1| ribosomal RNA small subunit methyltransferase B [Aeromonas
hydrophila subsp. hydrophila ATCC 7966]
gi|117560230|gb|ABK37178.1| ribosomal RNA small subunit methyltransferase B [Aeromonas
hydrophila subsp. hydrophila ATCC 7966]
Length = 430
Score = 98.6 bits (244), Expect = 7e-19, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 68/117 (58%), Gaps = 6/117 (5%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI++L++ +IL LW LK GG LL+ TC
Sbjct: 314 FDRILLDAPCSATGVIRRHPDIKWLRRDQDIRELAELQHRILGALWSKLKSGGTLLYATC 373
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQ------DYDGFFYSLFQKR 137
S+ EE+ +Q F D+ + Q P +Q + DGF+Y+ KR
Sbjct: 374 SVLPEENRDQIRAFLAATPDATLVPLHAQDTPECPGRQFLPGEAEMDGFYYAKLIKR 430
>gi|145637960|ref|ZP_01793600.1| potassium transporter peripheral membrane component [Haemophilus
influenzae PittHH]
gi|145268851|gb|EDK08814.1| potassium transporter peripheral membrane component [Haemophilus
influenzae PittHH]
Length = 450
Score = 98.6 bits (244), Expect = 7e-19, Method: Composition-based stats.
Identities = 53/120 (44%), Positives = 70/120 (58%), Gaps = 12/120 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR++ DI +L + KIL+ LW+ LKP G LL+ TC
Sbjct: 333 FDRILLDAPCSATGVIRRHPDIKWLRKETDIAQLVELQKKILSALWEKLKPNGVLLYATC 392
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSP---------GQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ EQ F H D+ L P Q +P N DGF+Y+ KR
Sbjct: 393 SVLPEENGEQIQAFLNAHADAELLPLPVSDDKSAVGFQFIPQPNSG---DGFYYAKLLKR 449
>gi|238763703|ref|ZP_04624662.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
kristensenii ATCC 33638]
gi|238698005|gb|EEP90763.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
kristensenii ATCC 33638]
Length = 429
Score = 98.6 bits (244), Expect = 7e-19, Method: Composition-based stats.
Identities = 48/120 (40%), Positives = 76/120 (63%), Gaps = 9/120 (7%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
++ FDRIL D PC+ +GV+RR+PDI WLRR +DI L++ +I+ +W LK GG +++
Sbjct: 313 DQQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIADLAQLQSEIIEAIWPKLKKGGVMVY 372
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSIRL-----NSPG-QLLPTVNKKQDYDGFFYSLFQKR 137
TCS+ EE+++Q F + H ++ + ++PG Q LP +D DGF+Y+ KR
Sbjct: 373 ATCSILPEENQQQIATFLQRHSEAELVETGTTSAPGRQNLP---HPEDGDGFYYAKLIKR 429
>gi|213027901|ref|ZP_03342348.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhi str. 404ty]
Length = 289
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 79/132 (59%), Gaps = 9/132 (6%)
Query: 13 KKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNN 70
K+ + R+ ++ + FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+
Sbjct: 160 KQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDA 219
Query: 71 LWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSI-----RLNSPGQLLPTVNKKQD 125
+W LKPGG L++ TCS+ EE+ +Q F + D+ + PGQ + ++
Sbjct: 220 VWPRLKPGGTLVYATCSVLPEENRDQIKAFLQRTPDAALSETGTPDQPGQQ--NLPGGEE 277
Query: 126 YDGFFYSLFQKR 137
DGFFY+ K+
Sbjct: 278 GDGFFYAKLIKK 289
>gi|16766697|ref|NP_462312.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|167995183|ref|ZP_02576273.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|374978046|ref|ZP_09719389.1| Ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Typhimurium str.
TN061786]
gi|378446786|ref|YP_005234418.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|378452238|ref|YP_005239598.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|378701302|ref|YP_005183260.1| 16S rRNA methyltransferase [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|378986002|ref|YP_005249158.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|378990713|ref|YP_005253877.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
gi|379702667|ref|YP_005244395.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. ST4/74]
gi|383498054|ref|YP_005398743.1| 16S rRNA methyltransferase [Salmonella enterica subsp. enterica
serovar Typhimurium str. 798]
gi|422027637|ref|ZP_16373969.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm1]
gi|422032679|ref|ZP_16378778.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm2]
gi|427554653|ref|ZP_18929271.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm8]
gi|427572290|ref|ZP_18933881.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm9]
gi|427593805|ref|ZP_18938789.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm3]
gi|427617903|ref|ZP_18943700.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm4]
gi|427641325|ref|ZP_18948554.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm6]
gi|427657665|ref|ZP_18953301.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm10]
gi|427662883|ref|ZP_18958173.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm11]
gi|427678040|ref|ZP_18963080.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm12]
gi|427800758|ref|ZP_18968460.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm5]
gi|46396986|sp|Q8ZLM5.1|RSMB_SALTY RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|16421964|gb|AAL22271.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|205327090|gb|EDZ13854.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|261248565|emb|CBG26403.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267995617|gb|ACY90502.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|301159951|emb|CBW19470.1| 16S rRNA methyltransferase [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|312914431|dbj|BAJ38405.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|321226460|gb|EFX51510.1| Ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Typhimurium str.
TN061786]
gi|323131766|gb|ADX19196.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. ST4/74]
gi|332990260|gb|AEF09243.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
gi|380464875|gb|AFD60278.1| 16S rRNA methyltransferase [Salmonella enterica subsp. enterica
serovar Typhimurium str. 798]
gi|414013918|gb|EKS97780.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm1]
gi|414015181|gb|EKS99007.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm8]
gi|414015492|gb|EKS99306.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm2]
gi|414028658|gb|EKT11835.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm9]
gi|414030036|gb|EKT13178.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm3]
gi|414032162|gb|EKT15174.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm4]
gi|414043521|gb|EKT26020.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm6]
gi|414043739|gb|EKT26223.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm10]
gi|414048734|gb|EKT30969.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm11]
gi|414056583|gb|EKT38395.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm12]
gi|414063069|gb|EKT44268.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm5]
Length = 429
Score = 98.6 bits (244), Expect = 7e-19, Method: Composition-based stats.
Identities = 48/116 (41%), Positives = 71/116 (61%), Gaps = 7/116 (6%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LKPGG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----RLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ +Q F + D+ + PGQ + ++ DGFFY+ K+
Sbjct: 376 SVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQ--QNLPGGEEGDGFFYAKLIKK 429
>gi|423199139|ref|ZP_17185722.1| ribosomal RNA small subunit methyltransferase B [Aeromonas
hydrophila SSU]
gi|404629493|gb|EKB26240.1| ribosomal RNA small subunit methyltransferase B [Aeromonas
hydrophila SSU]
Length = 430
Score = 98.6 bits (244), Expect = 7e-19, Method: Composition-based stats.
Identities = 51/120 (42%), Positives = 70/120 (58%), Gaps = 12/120 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI++L++ +IL LW LK GG LL+ TC
Sbjct: 314 FDRILLDAPCSATGVIRRHPDIKWLRRDQDIRELAELQRRILGALWSKLKSGGTLLYATC 373
Query: 87 SLWFEESEEQAIIFSKNHKDSIRL--------NSPG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ +Q F D+ + PG Q LP + + DGF+Y+ KR
Sbjct: 374 SVLPEENRDQIRAFLAATPDATLVPMHAEDTPECPGRQFLP---GEAEMDGFYYARLSKR 430
>gi|168239759|ref|ZP_02664817.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|194736151|ref|YP_002116352.1| 16S rRNA methyltransferase GidB [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|224493267|sp|B4TXB2.1|RSMB_SALSV RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|194711653|gb|ACF90874.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
CVM19633]
gi|197287575|gb|EDY26967.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
Length = 429
Score = 98.6 bits (244), Expect = 7e-19, Method: Composition-based stats.
Identities = 48/116 (41%), Positives = 71/116 (61%), Gaps = 7/116 (6%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LKPGG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----RLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ +Q F + D+ + PGQ + ++ DGFFY+ K+
Sbjct: 376 SVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQ--QNLPGGEEGDGFFYAKLIKK 429
>gi|421882970|ref|ZP_16314218.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Senftenberg str. SS209]
gi|379987478|emb|CCF86491.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Senftenberg str. SS209]
Length = 429
Score = 98.6 bits (244), Expect = 7e-19, Method: Composition-based stats.
Identities = 48/116 (41%), Positives = 71/116 (61%), Gaps = 7/116 (6%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LKPGG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----RLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ +Q F + D+ + PGQ + ++ DGFFY+ K+
Sbjct: 376 SVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQ--QNLPGGEEGDGFFYAKLIKK 429
>gi|294138832|ref|YP_003554810.1| ribosomal RNA small subunit methyltransferase B [Shewanella
violacea DSS12]
gi|293325301|dbj|BAJ00032.1| ribosomal RNA small subunit methyltransferase B [Shewanella
violacea DSS12]
Length = 425
Score = 98.6 bits (244), Expect = 7e-19, Method: Composition-based stats.
Identities = 47/122 (38%), Positives = 74/122 (60%), Gaps = 6/122 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+++ FDRIL D PC+ +GV+RR+PDI WLR+++DI +L+ KIL++ W+ LKPGG
Sbjct: 303 WWQGDKFDRILLDAPCSATGVIRRHPDIKWLRKQSDIDELAALQSKILDHCWQWLKPGGT 362
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLP------TVNKKQDYDGFFYSLF 134
LL+ TCS+ +E+E+Q F + D+ + Q P ++ DGF+Y+
Sbjct: 363 LLYATCSILPQENEQQIRSFLERADDATLIPISEQPHPDDIGWQITPGTENMDGFYYARL 422
Query: 135 QK 136
K
Sbjct: 423 VK 424
>gi|161616434|ref|YP_001590399.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Paratyphi B str. SPB7]
gi|197262016|ref|ZP_03162090.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|224493265|sp|A9N8B3.1|RSMB_SALPB RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|161365798|gb|ABX69566.1| hypothetical protein SPAB_04249 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|197240271|gb|EDY22891.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
Length = 429
Score = 98.6 bits (244), Expect = 7e-19, Method: Composition-based stats.
Identities = 48/116 (41%), Positives = 71/116 (61%), Gaps = 7/116 (6%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LKPGG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----RLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ +Q F + D+ + PGQ + ++ DGFFY+ K+
Sbjct: 376 SVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQ--QNLPGGEEGDGFFYAKLIKK 429
>gi|411011232|ref|ZP_11387561.1| 16S rRNA methyltransferase B [Aeromonas aquariorum AAK1]
Length = 430
Score = 98.6 bits (244), Expect = 7e-19, Method: Composition-based stats.
Identities = 51/120 (42%), Positives = 70/120 (58%), Gaps = 12/120 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI++L++ +IL LW LK GG LL+ TC
Sbjct: 314 FDRILLDAPCSATGVIRRHPDIKWLRRDQDIRELAELQRRILGALWSKLKSGGTLLYATC 373
Query: 87 SLWFEESEEQAIIFSKNHKDSIRL--------NSPG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ +Q F D+ + PG Q LP + + DGF+Y+ KR
Sbjct: 374 SVLPEENRDQIRAFLAATPDATLVPLHAEDTPECPGRQFLP---GEAEMDGFYYARLSKR 430
>gi|145642282|ref|ZP_01797847.1| sun protein [Haemophilus influenzae R3021]
gi|145273038|gb|EDK12919.1| sun protein [Haemophilus influenzae 22.4-21]
Length = 166
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 71/120 (59%), Gaps = 12/120 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR++ DI +L + KIL+ LW+ LKP G LL+ TC
Sbjct: 49 FDRILLDSPCSATGVIRRHPDIKWLRKETDIAQLVELQKKILSALWEKLKPNGVLLYATC 108
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSP---------GQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ EQ F H D+ L+ P Q +P N DGF+Y+ KR
Sbjct: 109 SVLPEENCEQIQAFLNAHADAELLSLPFGDDKSAVGFQFIPQPNSG---DGFYYAKLLKR 165
>gi|343499313|ref|ZP_08737296.1| 16S rRNA methyltransferase B [Vibrio tubiashii ATCC 19109]
gi|418479410|ref|ZP_13048492.1| 16S rRNA methyltransferase B [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
gi|342823188|gb|EGU57844.1| 16S rRNA methyltransferase B [Vibrio tubiashii ATCC 19109]
gi|384572921|gb|EIF03425.1| 16S rRNA methyltransferase B [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
Length = 426
Score = 98.6 bits (244), Expect = 7e-19, Method: Composition-based stats.
Identities = 47/121 (38%), Positives = 77/121 (63%), Gaps = 8/121 (6%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRIL D PC+ +GV+RR+PDI WLRR NDI L++ +I++ +W LK GG
Sbjct: 307 WWTGEKFDRILLDAPCSATGVIRRHPDIKWLRRANDIDALAELQSEIMDAMWSQLKVGGT 366
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSI----RLNSPG-QLLPTVNKKQDYDGFFYSLFQ 135
+++ TCS+ +E+ Q F + ++ +N+PG Q+LP ++D DGF+Y++
Sbjct: 367 MVYATCSITPKENVLQVKAFLERTDNATLVGSDINNPGRQILP---GEEDMDGFYYAVLI 423
Query: 136 K 136
K
Sbjct: 424 K 424
>gi|261250606|ref|ZP_05943181.1| ribosomal RNA small subunit methyltransferase B [Vibrio orientalis
CIP 102891 = ATCC 33934]
gi|417954290|ref|ZP_12597327.1| 16S rRNA methyltransferase B [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|260939175|gb|EEX95162.1| ribosomal RNA small subunit methyltransferase B [Vibrio orientalis
CIP 102891 = ATCC 33934]
gi|342815558|gb|EGU50473.1| 16S rRNA methyltransferase B [Vibrio orientalis CIP 102891 = ATCC
33934]
Length = 426
Score = 98.6 bits (244), Expect = 7e-19, Method: Composition-based stats.
Identities = 47/121 (38%), Positives = 77/121 (63%), Gaps = 8/121 (6%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRIL D PC+ +GV+RR+PDI WLRR NDI L++ +I++ +W LK GG
Sbjct: 307 WWTGEKFDRILLDAPCSATGVIRRHPDIKWLRRANDIDALAELQSEIMDAMWGQLKVGGT 366
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSI----RLNSPG-QLLPTVNKKQDYDGFFYSLFQ 135
+++ TCS+ +E+ Q F + ++ +N+PG Q+LP ++D DGF+Y++
Sbjct: 367 MVYATCSITPQENVLQVKAFLERTDNATLVGSDINNPGRQILP---GEEDMDGFYYAVLI 423
Query: 136 K 136
K
Sbjct: 424 K 424
>gi|365846738|ref|ZP_09387238.1| ribosomal RNA small subunit methyltransferase B [Yokenella
regensburgei ATCC 43003]
gi|364573468|gb|EHM50964.1| ribosomal RNA small subunit methyltransferase B [Yokenella
regensburgei ATCC 43003]
Length = 439
Score = 98.6 bits (244), Expect = 7e-19, Method: Composition-based stats.
Identities = 48/114 (42%), Positives = 70/114 (61%), Gaps = 3/114 (2%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L+ +IL+ +W LK GG L++ TC
Sbjct: 326 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAGLQREILDAIWPHLKSGGTLVYATC 385
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNK---KQDYDGFFYSLFQKR 137
S+ EE+ EQ F + D++ ++ Q P + +D DGFFY+ K+
Sbjct: 386 SILPEENCEQVRAFLERTPDAVLSDTGTQEQPGIQNLPGAEDGDGFFYAKLIKK 439
>gi|375003269|ref|ZP_09727608.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Infantis str. SARB27]
gi|353074184|gb|EHB39945.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Infantis str. SARB27]
Length = 429
Score = 98.6 bits (244), Expect = 8e-19, Method: Composition-based stats.
Identities = 48/116 (41%), Positives = 71/116 (61%), Gaps = 7/116 (6%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LKPGG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----RLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ +Q F + D+ + PGQ + ++ DGFFY+ K+
Sbjct: 376 SVLPEENRDQIKAFLQRTPDAALSETGTPDQPGQ--QNLPGGEEGDGFFYAKLIKK 429
>gi|194443414|ref|YP_002042660.1| 16S rRNA methyltransferase GidB [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|418789938|ref|ZP_13345720.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19447]
gi|418792627|ref|ZP_13348368.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19449]
gi|418800386|ref|ZP_13356044.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19567]
gi|418806611|ref|ZP_13362181.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21550]
gi|418810773|ref|ZP_13366310.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22513]
gi|418818464|ref|ZP_13373936.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21538]
gi|418823798|ref|ZP_13379199.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22425]
gi|418827007|ref|ZP_13382174.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22462]
gi|418829206|ref|ZP_13384193.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM N18486]
gi|418837898|ref|ZP_13392756.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM N1543]
gi|418841708|ref|ZP_13396525.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21554]
gi|418846624|ref|ZP_13401391.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19443]
gi|418851534|ref|ZP_13406245.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 37978]
gi|418854709|ref|ZP_13409375.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19593]
gi|418861138|ref|ZP_13415707.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19470]
gi|418865698|ref|ZP_13420171.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19536]
gi|418870618|ref|ZP_13425032.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 4176]
gi|224493264|sp|B4SUR0.1|RSMB_SALNS RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|194402077|gb|ACF62299.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Newport str. SL254]
gi|392759540|gb|EJA16391.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19447]
gi|392761211|gb|EJA18040.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19567]
gi|392767407|gb|EJA24176.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19449]
gi|392780459|gb|EJA37111.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22513]
gi|392781769|gb|EJA38407.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21550]
gi|392784634|gb|EJA41222.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22425]
gi|392785461|gb|EJA42037.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21538]
gi|392797444|gb|EJA53751.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM N1543]
gi|392802472|gb|EJA58685.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22462]
gi|392804886|gb|EJA61025.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM N18486]
gi|392808069|gb|EJA64124.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21554]
gi|392809833|gb|EJA65862.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19443]
gi|392817423|gb|EJA73337.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 37978]
gi|392823744|gb|EJA79538.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19593]
gi|392825300|gb|EJA81052.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19470]
gi|392827295|gb|EJA83005.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19536]
gi|392830205|gb|EJA85861.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 4176]
Length = 429
Score = 98.6 bits (244), Expect = 8e-19, Method: Composition-based stats.
Identities = 48/116 (41%), Positives = 71/116 (61%), Gaps = 7/116 (6%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LKPGG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----RLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ +Q F + D+ + PGQ + ++ DGFFY+ K+
Sbjct: 376 SVLPEENRDQIKAFLQRTPDAALSETGTPDQPGQ--QNLPGGEEGDGFFYAKLIKK 429
>gi|400406380|ref|YP_006589128.1| ribosomal RNA small subunit methyltransferase RsmB [secondary
endosymbiont of Heteropsylla cubana]
gi|400364633|gb|AFP85700.1| ribosomal RNA small subunit methyltransferase RsmB [secondary
endosymbiont of Heteropsylla cubana]
Length = 432
Score = 98.6 bits (244), Expect = 8e-19, Method: Composition-based stats.
Identities = 51/118 (43%), Positives = 74/118 (62%), Gaps = 9/118 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PD+ WLRR +DI KL+K KIL + WK+LKPGG L+ TC
Sbjct: 317 FDRILLDPPCSATGVIRRHPDVKWLRRDSDIAKLAKLQKKILCSAWKLLKPGGVFLYTTC 376
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----RLNSPG-QLLPTVNKKQDYDGFFYSLFQKRK 138
S+ EE+ +Q F ++ +++ + + G QL P + DGFFY+ K +
Sbjct: 377 SILPEENCDQIAAFLDSNPNALLQKISKFSEVGLQLFP---QPDSGDGFFYAKMIKEQ 431
>gi|62181914|ref|YP_218331.1| 16S rRNA methyltransferase GidB [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|168264711|ref|ZP_02686684.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|224585203|ref|YP_002639002.1| 16S rRNA methyltransferase GidB [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|375116254|ref|ZP_09761424.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SCSA50]
gi|75480382|sp|Q57J62.1|RSMB_SALCH RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|254766862|sp|C0PZV1.1|RSMB_SALPC RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|62129547|gb|AAX67250.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|205346881|gb|EDZ33512.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|224469731|gb|ACN47561.1| sun protein [Salmonella enterica subsp. enterica serovar Paratyphi
C strain RKS4594]
gi|322716400|gb|EFZ07971.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SCSA50]
Length = 429
Score = 98.6 bits (244), Expect = 8e-19, Method: Composition-based stats.
Identities = 48/116 (41%), Positives = 71/116 (61%), Gaps = 7/116 (6%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LKPGG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----RLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ +Q F + D+ + PGQ + ++ DGFFY+ K+
Sbjct: 376 SVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQ--QNLPGGEEGDGFFYAKLIKK 429
>gi|409204029|ref|ZP_11232229.1| 16S rRNA methyltransferase [Pseudoalteromonas flavipulchra JG1]
Length = 427
Score = 98.6 bits (244), Expect = 8e-19, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 76/126 (60%), Gaps = 14/126 (11%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + +DRIL D+PC+ +GV+RR+PDI WLRR +DI L +I++ +W +LKPGG
Sbjct: 307 WWDGEQYDRILLDVPCSATGVIRRHPDIKWLRRASDIDNLVTLQAQIIDKIWPLLKPGGT 366
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRL--------NSPG-QLLPTVNKKQDYDGFFY 131
L++ TCS+ +E+++Q F D+ + PG QLLP ++ DGF+Y
Sbjct: 367 LVYATCSVLPQENQQQIARFLSATPDATLVPLHDADTQTQPGLQLLPGLS-----DGFYY 421
Query: 132 SLFQKR 137
+ K+
Sbjct: 422 AKLTKQ 427
>gi|416424233|ref|ZP_11691490.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|416435013|ref|ZP_11697983.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|416437074|ref|ZP_11698599.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|416448820|ref|ZP_11706524.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|416453441|ref|ZP_11709587.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|416461760|ref|ZP_11715462.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|416462973|ref|ZP_11715744.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|416476110|ref|ZP_11720954.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|416489900|ref|ZP_11726502.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|416502487|ref|ZP_11732799.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|416510253|ref|ZP_11736928.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB31]
gi|416516404|ref|ZP_11739086.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. ATCC BAA710]
gi|416525274|ref|ZP_11741536.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. LQC 10]
gi|416539547|ref|ZP_11750007.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB30]
gi|416543702|ref|ZP_11752427.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|416552262|ref|ZP_11756985.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 29N]
gi|416559522|ref|ZP_11760747.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 42N]
gi|416567101|ref|ZP_11764184.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 4441 H]
gi|416575689|ref|ZP_11768505.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|416582083|ref|ZP_11772421.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|416595299|ref|ZP_11781112.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|416602552|ref|ZP_11785348.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|416606254|ref|ZP_11787628.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|416613521|ref|ZP_11792075.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|416618637|ref|ZP_11794650.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|416634992|ref|ZP_11802843.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|416641509|ref|ZP_11805501.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|416647709|ref|ZP_11808539.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|416659333|ref|ZP_11814770.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|416668369|ref|ZP_11818866.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|416672429|ref|ZP_11820691.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|416692150|ref|ZP_11826350.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|416704455|ref|ZP_11830277.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|416714222|ref|ZP_11837614.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|416720711|ref|ZP_11842312.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|416721774|ref|ZP_11842895.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|416729763|ref|ZP_11848248.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|416741935|ref|ZP_11855461.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|416747466|ref|ZP_11858240.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|416754116|ref|ZP_11861135.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|416763312|ref|ZP_11867001.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|416766416|ref|ZP_11869111.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|418482260|ref|ZP_13051282.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 80959-06]
gi|418489967|ref|ZP_13056525.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035278]
gi|418495173|ref|ZP_13061617.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035318]
gi|418498824|ref|ZP_13065237.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035320]
gi|418503541|ref|ZP_13069901.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035321]
gi|418510118|ref|ZP_13076406.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035327]
gi|418525411|ref|ZP_13091392.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008286]
gi|322615051|gb|EFY11975.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|322617338|gb|EFY14239.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|322625560|gb|EFY22385.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|322626402|gb|EFY23211.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|322632086|gb|EFY28839.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|322635035|gb|EFY31758.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|322643264|gb|EFY39831.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|322646652|gb|EFY43159.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|322649998|gb|EFY46417.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|322652715|gb|EFY49055.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|322659528|gb|EFY55772.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|322665530|gb|EFY61717.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|322670424|gb|EFY66563.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|322670497|gb|EFY66631.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|322675073|gb|EFY71156.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|322681610|gb|EFY77639.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|322685954|gb|EFY81943.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|323195824|gb|EFZ80997.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|323196420|gb|EFZ81571.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|323202705|gb|EFZ87744.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|323211254|gb|EFZ96099.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|323216037|gb|EGA00768.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|323223472|gb|EGA07800.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|323226798|gb|EGA10988.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|323231840|gb|EGA15950.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|323233207|gb|EGA17302.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|323237274|gb|EGA21339.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|323245509|gb|EGA29508.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|323249015|gb|EGA32937.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|323250638|gb|EGA34519.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|323256867|gb|EGA40581.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|323263016|gb|EGA46563.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|323266016|gb|EGA49511.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|323272773|gb|EGA56176.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|363549377|gb|EHL33731.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB31]
gi|363559191|gb|EHL43366.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. LQC 10]
gi|363559897|gb|EHL44046.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB30]
gi|363562421|gb|EHL46519.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. ATCC BAA710]
gi|363564748|gb|EHL48790.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 29N]
gi|363575877|gb|EHL59723.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 42N]
gi|363579115|gb|EHL62909.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 4441 H]
gi|366059722|gb|EHN23990.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035318]
gi|366064233|gb|EHN28434.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 80959-06]
gi|366068338|gb|EHN32482.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035278]
gi|366072629|gb|EHN36718.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035321]
gi|366073067|gb|EHN37145.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035320]
gi|366077222|gb|EHN41241.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035327]
gi|366830144|gb|EHN57017.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|372206676|gb|EHP20179.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008286]
Length = 429
Score = 98.6 bits (244), Expect = 8e-19, Method: Composition-based stats.
Identities = 48/116 (41%), Positives = 71/116 (61%), Gaps = 7/116 (6%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LKPGG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----RLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ +Q F + D+ + PGQ + ++ DGFFY+ K+
Sbjct: 376 SVLPEENRDQIKAFLQRTPDATLSETGTPDQPGQ--QNLPGGEEGDGFFYAKLIKK 429
>gi|417949578|ref|ZP_12592712.1| 16S rRNA methyltransferase B [Vibrio splendidus ATCC 33789]
gi|342808087|gb|EGU43257.1| 16S rRNA methyltransferase B [Vibrio splendidus ATCC 33789]
Length = 426
Score = 98.6 bits (244), Expect = 8e-19, Method: Composition-based stats.
Identities = 46/116 (39%), Positives = 77/116 (66%), Gaps = 8/116 (6%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR +DI+ L++ +I++ +W+ LK GG +++ TC
Sbjct: 313 FDRILLDAPCSATGVIRRHPDIKWLRRASDIEALAELQSEIMDAMWRQLKEGGTMVYATC 372
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ +E+ Q F + +++ + S PG Q+LP ++D DGF+Y++ K+
Sbjct: 373 SITPQENVLQVKAFLERTENATLVGSDIENPGRQILP---GEEDMDGFYYAVLVKQ 425
>gi|329122539|ref|ZP_08251122.1| RNA methyltransferase Sun [Haemophilus aegyptius ATCC 11116]
gi|327473144|gb|EGF18568.1| RNA methyltransferase Sun [Haemophilus aegyptius ATCC 11116]
Length = 451
Score = 98.6 bits (244), Expect = 8e-19, Method: Composition-based stats.
Identities = 53/120 (44%), Positives = 71/120 (59%), Gaps = 12/120 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR++ DI +L + KIL+ LW+ LKP G LL+ TC
Sbjct: 333 FDRILLDSPCSATGVIRRHPDIKWLRKETDIAQLVELQKKILSALWEKLKPNGVLLYATC 392
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSP---------GQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ EQ F H D+ L+ P Q +P N DGF+Y+ KR
Sbjct: 393 SVLPEENCEQIQAFLNAHTDAELLSLPFSDDKSAVGFQFIPQPNSG---DGFYYAKLLKR 449
>gi|148978298|ref|ZP_01814803.1| Sun protein [Vibrionales bacterium SWAT-3]
gi|145962457|gb|EDK27735.1| Sun protein [Vibrionales bacterium SWAT-3]
Length = 426
Score = 98.6 bits (244), Expect = 8e-19, Method: Composition-based stats.
Identities = 46/116 (39%), Positives = 77/116 (66%), Gaps = 8/116 (6%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR +DI+ L++ +I++ +W+ LK GG +++ TC
Sbjct: 313 FDRILLDAPCSATGVIRRHPDIKWLRRASDIEALAELQSEIMDAMWRQLKEGGTMVYATC 372
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ +E+ Q F + +++ + S PG Q+LP ++D DGF+Y++ K+
Sbjct: 373 SITPQENVLQVKAFLERTENATLVGSDIENPGRQILP---GEEDMDGFYYAVLVKQ 425
>gi|145631966|ref|ZP_01787719.1| methionyl-tRNA formyltransferase [Haemophilus influenzae R3021]
gi|144982380|gb|EDJ89957.1| methionyl-tRNA formyltransferase [Haemophilus influenzae R3021]
Length = 450
Score = 98.6 bits (244), Expect = 8e-19, Method: Composition-based stats.
Identities = 53/120 (44%), Positives = 70/120 (58%), Gaps = 12/120 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR++ DI +L + KIL+ LW+ LKP G LL+ TC
Sbjct: 333 FDRILLDAPCSATGVIRRHPDIKWLRKETDIAQLVELQKKILSALWEKLKPNGVLLYATC 392
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSP---------GQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ EQ F H D+ L P Q +P N DGF+Y+ KR
Sbjct: 393 SVLPEENGEQIQAFLNAHADAELLPLPFSDDKSAVGFQFIPQPNSG---DGFYYAKLLKR 449
>gi|145639370|ref|ZP_01794975.1| methionyl-tRNA formyltransferase [Haemophilus influenzae PittII]
gi|145271417|gb|EDK11329.1| methionyl-tRNA formyltransferase [Haemophilus influenzae PittII]
Length = 451
Score = 98.6 bits (244), Expect = 8e-19, Method: Composition-based stats.
Identities = 53/120 (44%), Positives = 71/120 (59%), Gaps = 12/120 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR++ DI +L + KIL+ LW+ LKP G LL+ TC
Sbjct: 333 FDRILLDSPCSATGVIRRHPDIKWLRKETDIAQLVELQKKILSALWEKLKPNGVLLYATC 392
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSP---------GQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ EQ F H D+ L+ P Q +P N DGF+Y+ KR
Sbjct: 393 SVLPEENCEQIQAFLNAHADAELLSLPFIDDKSAVGFQFIPQPNSG---DGFYYAKLLKR 449
>gi|145629884|ref|ZP_01785676.1| potassium transporter peripheral membrane component [Haemophilus
influenzae 22.1-21]
gi|144977738|gb|EDJ87685.1| potassium transporter peripheral membrane component [Haemophilus
influenzae 22.1-21]
Length = 450
Score = 98.6 bits (244), Expect = 8e-19, Method: Composition-based stats.
Identities = 53/120 (44%), Positives = 70/120 (58%), Gaps = 12/120 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR++ DI +L + KIL+ LW+ LKP G LL+ TC
Sbjct: 333 FDRILLDAPCSATGVIRRHPDIKWLRKETDIAQLVELQRKILSALWEKLKPNGVLLYATC 392
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSP---------GQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ EQ F H D+ L P Q +P N DGF+Y+ KR
Sbjct: 393 SVLPEENGEQIQAFLNAHADAELLPLPFSDDKSAVGFQFIPQPNSG---DGFYYAKLLKR 449
>gi|410859672|ref|YP_006974906.1| 16S rRNA methyltransferase B [Alteromonas macleodii AltDE1]
gi|410816934|gb|AFV83551.1| 16S rRNA methyltransferase B [Alteromonas macleodii AltDE1]
Length = 439
Score = 98.6 bits (244), Expect = 8e-19, Method: Composition-based stats.
Identities = 50/128 (39%), Positives = 77/128 (60%), Gaps = 12/128 (9%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ K FDRIL D PC+ +GV+RR+PDI WLR+ NDI L++ +IL+ LW +LKPGG
Sbjct: 315 WWDGKPFDRILLDAPCSATGVIRRHPDIRWLRKANDIDNLAQLQRRILDTLWGLLKPGGT 374
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDS-----IRLNSPG----QLLPTVNKKQDYDGFFY 131
LL+ TCS+ +E+ Q F + D+ ++ +P Q+ P +Q DGF+Y
Sbjct: 375 LLYATCSILPKENMAQIQQFLADTPDASLSPILKTETPDKPGRQITP---GEQQMDGFYY 431
Query: 132 SLFQKRKE 139
+ K ++
Sbjct: 432 ARLVKSQD 439
>gi|33152966|ref|NP_874319.1| Fmu protein [Haemophilus ducreyi 35000HP]
gi|46396801|sp|Q7VKC4.1|RSMB_HAEDU RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|33149191|gb|AAP96708.1| SUN protein [Haemophilus ducreyi 35000HP]
Length = 435
Score = 98.6 bits (244), Expect = 8e-19, Method: Composition-based stats.
Identities = 52/118 (44%), Positives = 70/118 (59%), Gaps = 11/118 (9%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR+ DI +L + KIL+ LW LKP G L++ TC
Sbjct: 318 FDRILLDAPCSATGVIRRHPDIKWLRQAGDISELVELQAKILSALWHRLKPNGTLVYATC 377
Query: 87 SLWFEESEEQAIIFSKNHKDS--IRLNSPG------QLLPTVNKKQDYDGFFYSLFQK 136
S+ E+ EQ I F + D+ I ++ G Q LP N DGFFY+ +K
Sbjct: 378 SILPAENSEQIIQFITANPDAELIEMDFNGEKAIMKQFLPQQNGG---DGFFYAKLRK 432
>gi|260583337|ref|ZP_05851110.1| ribosomal RNA small subunit methyltransferase B [Haemophilus
influenzae NT127]
gi|260093608|gb|EEW77523.1| ribosomal RNA small subunit methyltransferase B [Haemophilus
influenzae NT127]
Length = 451
Score = 98.6 bits (244), Expect = 8e-19, Method: Composition-based stats.
Identities = 53/120 (44%), Positives = 71/120 (59%), Gaps = 12/120 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR++ DI +L + KIL+ LW+ LKP G LL+ TC
Sbjct: 333 FDRILLDSPCSATGVIRRHPDIKWLRKETDIAQLVELQKKILSALWEKLKPNGVLLYATC 392
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSP---------GQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ EQ F H D+ L+ P Q +P N DGF+Y+ KR
Sbjct: 393 SVLPEENCEQIQAFLNAHADAELLSLPFSDDKSAVGFQFIPQPNSG---DGFYYAKLLKR 449
>gi|229846677|ref|ZP_04466785.1| sun protein [Haemophilus influenzae 7P49H1]
gi|229810770|gb|EEP46488.1| sun protein [Haemophilus influenzae 7P49H1]
Length = 451
Score = 98.6 bits (244), Expect = 8e-19, Method: Composition-based stats.
Identities = 53/120 (44%), Positives = 71/120 (59%), Gaps = 12/120 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR++ DI +L + KIL+ LW+ LKP G LL+ TC
Sbjct: 333 FDRILLDSPCSATGVIRRHPDIKWLRKETDIAQLVELQKKILSALWEKLKPNGVLLYATC 392
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSP---------GQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ EQ F H D+ L+ P Q +P N DGF+Y+ KR
Sbjct: 393 SVLPEENCEQIQAFLNAHADAELLSLPFSDDKSAVGFQFIPQPNSG---DGFYYAKLLKR 449
>gi|16762874|ref|NP_458491.1| 16S rRNA methyltransferase GidB [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|29144361|ref|NP_807703.1| 16S rRNA methyltransferase GidB [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|213425783|ref|ZP_03358533.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhi str. E02-1180]
gi|213859535|ref|ZP_03385239.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhi str. M223]
gi|289806045|ref|ZP_06536674.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhi str. AG3]
gi|378962278|ref|YP_005219764.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Typhi str. P-stx-12]
gi|46396982|sp|Q8Z1X1.1|RSMB_SALTI RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|25303750|pir||AH1009 sun protein [imported] - Salmonella enterica subsp. enterica
serovar Typhi (strain CT18)
gi|16505181|emb|CAD09177.1| sun protein [Salmonella enterica subsp. enterica serovar Typhi]
gi|29139999|gb|AAO71563.1| sun protein [Salmonella enterica subsp. enterica serovar Typhi str.
Ty2]
gi|374356150|gb|AEZ47911.1| Ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Typhi str. P-stx-12]
Length = 429
Score = 98.2 bits (243), Expect = 8e-19, Method: Composition-based stats.
Identities = 48/116 (41%), Positives = 71/116 (61%), Gaps = 7/116 (6%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LKPGG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----RLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ +Q F + D+ + PGQ + ++ DGFFY+ K+
Sbjct: 376 SVLPEENRDQIKAFLQRTPDAALSETGTPDQPGQ--QNLPGGEEGDGFFYAKLIKK 429
>gi|332139428|ref|YP_004425166.1| 16S rRNA methyltransferase B [Alteromonas macleodii str. 'Deep
ecotype']
gi|327549450|gb|AEA96168.1| 16S rRNA methyltransferase B [Alteromonas macleodii str. 'Deep
ecotype']
Length = 439
Score = 98.2 bits (243), Expect = 8e-19, Method: Composition-based stats.
Identities = 50/128 (39%), Positives = 77/128 (60%), Gaps = 12/128 (9%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ K FDRIL D PC+ +GV+RR+PDI WLR+ NDI L++ +IL+ LW +LKPGG
Sbjct: 315 WWDGKPFDRILLDAPCSATGVIRRHPDIRWLRKANDIDNLAQLQRRILDTLWGLLKPGGT 374
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDS-----IRLNSPG----QLLPTVNKKQDYDGFFY 131
LL+ TCS+ +E+ Q F + D+ ++ +P Q+ P +Q DGF+Y
Sbjct: 375 LLYATCSILPKENMAQIQQFLADTPDASLSPILKTETPDKPGRQITP---GEQQMDGFYY 431
Query: 132 SLFQKRKE 139
+ K ++
Sbjct: 432 ARLVKSQD 439
>gi|167554205|ref|ZP_02347946.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
gi|205321540|gb|EDZ09379.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
Length = 429
Score = 98.2 bits (243), Expect = 9e-19, Method: Composition-based stats.
Identities = 48/116 (41%), Positives = 71/116 (61%), Gaps = 7/116 (6%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LKPGG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----RLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ +Q F + D+ + PGQ + ++ DGFFY+ K+
Sbjct: 376 SVLPEENRDQIKAFLQRTPDAALSETGTPDQPGQ--QNLPGGEEGDGFFYAKLIKK 429
>gi|37528514|ref|NP_931859.1| 16S rRNA methyltransferase B [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|46396778|sp|Q7MYI0.1|RSMB_PHOLL RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|36787952|emb|CAE17069.1| RsmB protein (SUN/FMU protein), 16S RNA m5C967 methyltransferase
[Photorhabdus luminescens subsp. laumondii TTO1]
Length = 429
Score = 98.2 bits (243), Expect = 9e-19, Method: Composition-based stats.
Identities = 49/121 (40%), Positives = 73/121 (60%), Gaps = 9/121 (7%)
Query: 23 KNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLL 82
+N+ FDRIL D PC+ +GV+RR+PDI WLRR+ DI +L + +IL+ +W LK G L+
Sbjct: 312 ENQQFDRILLDAPCSATGVIRRHPDIKWLRREEDIAQLVQLQSEILDAIWPYLKKSGTLV 371
Query: 83 FVTCSLWFEESEEQAIIFSKNHKDSIRLNSP------GQLLPTVNKKQDYDGFFYSLFQK 136
+ TCS+ +E+ +Q F K H D+ + Q++P +N DGFFY+ K
Sbjct: 372 YATCSILPDENCQQISSFLKRHSDAKLAGTETNDCLGKQIIPELNGG---DGFFYARLTK 428
Query: 137 R 137
R
Sbjct: 429 R 429
>gi|224493303|sp|A9R925.2|RSMB_YERPG RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
Length = 429
Score = 98.2 bits (243), Expect = 9e-19, Method: Composition-based stats.
Identities = 49/120 (40%), Positives = 74/120 (61%), Gaps = 9/120 (7%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
++ FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +I+ +W LK GG L++
Sbjct: 313 DQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGGVLVY 372
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
TCS+ EE+++Q F + H ++ + PG Q LP +D DGFFY+ K+
Sbjct: 373 ATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLP---HPEDGDGFFYAKIIKK 429
>gi|45434953|gb|AAS60514.1| tRNA and rRNA cytosine-C5-methylases [Yersinia pestis biovar
Microtus str. 91001]
Length = 435
Score = 98.2 bits (243), Expect = 9e-19, Method: Composition-based stats.
Identities = 49/120 (40%), Positives = 74/120 (61%), Gaps = 9/120 (7%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
++ FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +I+ +W LK GG L++
Sbjct: 319 DQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGGVLVY 378
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
TCS+ EE+++Q F + H ++ + PG Q LP +D DGFFY+ K+
Sbjct: 379 ATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLP---HPEDGDGFFYAKIIKK 435
>gi|165936548|ref|ZP_02225116.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Orientalis str. IP275]
gi|166213307|ref|ZP_02239342.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Antiqua str. B42003004]
gi|167399475|ref|ZP_02304999.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Antiqua str. UG05-0454]
gi|167419402|ref|ZP_02311155.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Orientalis str. MG05-1020]
gi|167425618|ref|ZP_02317371.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Mediaevalis str. K1973002]
gi|270488262|ref|ZP_06205336.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
KIM D27]
gi|294502314|ref|YP_003566376.1| hypothetical protein YPZ3_0204 [Yersinia pestis Z176003]
gi|384120798|ref|YP_005503418.1| hypothetical protein YPD4_0206 [Yersinia pestis D106004]
gi|384124680|ref|YP_005507294.1| hypothetical protein YPD8_0211 [Yersinia pestis D182038]
gi|165915664|gb|EDR34273.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Orientalis str. IP275]
gi|166205605|gb|EDR50085.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Antiqua str. B42003004]
gi|166963396|gb|EDR59417.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Orientalis str. MG05-1020]
gi|167051979|gb|EDR63387.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Antiqua str. UG05-0454]
gi|167055308|gb|EDR65102.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Mediaevalis str. K1973002]
gi|262360394|gb|ACY57115.1| hypothetical protein YPD4_0206 [Yersinia pestis D106004]
gi|262364344|gb|ACY60901.1| hypothetical protein YPD8_0211 [Yersinia pestis D182038]
gi|270336766|gb|EFA47543.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
KIM D27]
gi|294352773|gb|ADE63114.1| hypothetical protein YPZ3_0204 [Yersinia pestis Z176003]
Length = 431
Score = 98.2 bits (243), Expect = 9e-19, Method: Composition-based stats.
Identities = 49/120 (40%), Positives = 74/120 (61%), Gaps = 9/120 (7%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
++ FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +I+ +W LK GG L++
Sbjct: 315 DQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGGVLVY 374
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
TCS+ EE+++Q F + H ++ + PG Q LP +D DGFFY+ K+
Sbjct: 375 ATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLP---HPEDGDGFFYAKIIKK 431
>gi|162420599|ref|YP_001605204.1| 16S rRNA methyltransferase B [Yersinia pestis Angola]
gi|162353414|gb|ABX87362.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
Angola]
Length = 435
Score = 98.2 bits (243), Expect = 9e-19, Method: Composition-based stats.
Identities = 49/120 (40%), Positives = 74/120 (61%), Gaps = 9/120 (7%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
++ FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +I+ +W LK GG L++
Sbjct: 319 DQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGGVLVY 378
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
TCS+ EE+++Q F + H ++ + PG Q LP +D DGFFY+ K+
Sbjct: 379 ATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLP---HPEDGDGFFYAKIIKK 435
>gi|22127891|ref|NP_671314.1| 16S rRNA methyltransferase GidB [Yersinia pestis KIM10+]
gi|51597957|ref|YP_072148.1| 16S rRNA methyltransferase GidB [Yersinia pseudotuberculosis IP
32953]
gi|108809224|ref|YP_653140.1| 16S rRNA methyltransferase B [Yersinia pestis Antiqua]
gi|108813989|ref|YP_649756.1| 16S rRNA methyltransferase B [Yersinia pestis Nepal516]
gi|145597481|ref|YP_001161556.1| 16S rRNA methyltransferase B [Yersinia pestis Pestoides F]
gi|150260712|ref|ZP_01917440.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis CA88-4125]
gi|153947745|ref|YP_001402832.1| 16S rRNA methyltransferase B [Yersinia pseudotuberculosis IP 31758]
gi|161511468|ref|NP_991637.2| 16S rRNA methyltransferase GidB [Yersinia pestis biovar Microtus
str. 91001]
gi|165927896|ref|ZP_02223728.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Orientalis str. F1991016]
gi|166010534|ref|ZP_02231432.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Antiqua str. E1979001]
gi|167468244|ref|ZP_02332948.1| 16S rRNA methyltransferase B [Yersinia pestis FV-1]
gi|170022575|ref|YP_001719080.1| 16S rRNA methyltransferase B [Yersinia pseudotuberculosis YPIII]
gi|186897153|ref|YP_001874265.1| 16S rRNA methyltransferase B [Yersinia pseudotuberculosis PB1/+]
gi|218927446|ref|YP_002345321.1| 16S rRNA methyltransferase GidB [Yersinia pestis CO92]
gi|229836278|ref|ZP_04456445.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis Pestoides A]
gi|229840098|ref|ZP_04460257.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229842180|ref|ZP_04462335.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis biovar
Orientalis str. India 195]
gi|229904520|ref|ZP_04519631.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis Nepal516]
gi|384137783|ref|YP_005520485.1| 16S rRNA methyltransferase B [Yersinia pestis A1122]
gi|384412869|ref|YP_005622231.1| 16S rRNA methyltransferase B [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|420544668|ref|ZP_15042874.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-01]
gi|420549966|ref|ZP_15047612.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-02]
gi|420555423|ref|ZP_15052467.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-03]
gi|420561069|ref|ZP_15057380.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-04]
gi|420566104|ref|ZP_15061921.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-05]
gi|420571725|ref|ZP_15067026.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-06]
gi|420577062|ref|ZP_15071849.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-07]
gi|420582425|ref|ZP_15076736.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-08]
gi|420587556|ref|ZP_15081374.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-09]
gi|420592870|ref|ZP_15086154.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-10]
gi|420598558|ref|ZP_15091254.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-11]
gi|420604095|ref|ZP_15096181.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-12]
gi|420609431|ref|ZP_15101031.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-13]
gi|420614675|ref|ZP_15105710.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-14]
gi|420620109|ref|ZP_15110441.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-15]
gi|420625176|ref|ZP_15115030.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-16]
gi|420630337|ref|ZP_15119720.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-19]
gi|420635467|ref|ZP_15124306.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-25]
gi|420641087|ref|ZP_15129371.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-29]
gi|420646224|ref|ZP_15134086.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-32]
gi|420651870|ref|ZP_15139142.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-34]
gi|420657290|ref|ZP_15144036.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-36]
gi|420662645|ref|ZP_15148813.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-42]
gi|420667636|ref|ZP_15153323.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-45]
gi|420672962|ref|ZP_15158167.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-46]
gi|420678457|ref|ZP_15163170.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-47]
gi|420683687|ref|ZP_15167872.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-48]
gi|420688852|ref|ZP_15172463.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-52]
gi|420694629|ref|ZP_15177518.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-53]
gi|420699899|ref|ZP_15182139.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-54]
gi|420706071|ref|ZP_15187007.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-55]
gi|420711362|ref|ZP_15191815.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-56]
gi|420716724|ref|ZP_15196573.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-58]
gi|420722375|ref|ZP_15201380.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-59]
gi|420728003|ref|ZP_15206376.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-60]
gi|420733127|ref|ZP_15210991.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-61]
gi|420738589|ref|ZP_15215927.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-63]
gi|420743830|ref|ZP_15220623.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-64]
gi|420749713|ref|ZP_15225556.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-65]
gi|420754755|ref|ZP_15230087.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-66]
gi|420760885|ref|ZP_15234944.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-71]
gi|420766044|ref|ZP_15239617.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-72]
gi|420771080|ref|ZP_15244122.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-76]
gi|420776425|ref|ZP_15248948.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-88]
gi|420781883|ref|ZP_15253739.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-89]
gi|420787340|ref|ZP_15258516.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-90]
gi|420792784|ref|ZP_15263423.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-91]
gi|420797914|ref|ZP_15268028.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-92]
gi|420803308|ref|ZP_15272884.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-93]
gi|420808486|ref|ZP_15277574.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-94]
gi|420814279|ref|ZP_15282752.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-95]
gi|420819406|ref|ZP_15287411.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-96]
gi|420824501|ref|ZP_15291961.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-98]
gi|420830323|ref|ZP_15297222.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-99]
gi|420835134|ref|ZP_15301557.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-100]
gi|420840260|ref|ZP_15306201.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-101]
gi|420845873|ref|ZP_15311283.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-102]
gi|420851196|ref|ZP_15316045.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-103]
gi|420856800|ref|ZP_15320755.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-113]
gi|421761664|ref|ZP_16198464.1| 16S rRNA methyltransferase B [Yersinia pestis INS]
gi|46396984|sp|Q8ZJ81.1|RSMB_YERPE RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|81638254|sp|Q664V2.1|RSMB_YERPS RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|122979388|sp|Q1C2X7.1|RSMB_YERPA RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|122979880|sp|Q1CCX4.1|RSMB_YERPN RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|224493292|sp|A7FNK4.1|RSMB_YERP3 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|224493293|sp|B2K506.1|RSMB_YERPB RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|224493294|sp|A4TH21.1|RSMB_YERPP RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|224493295|sp|B1JJH6.1|RSMB_YERPY RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|21961028|gb|AAM87565.1|AE014004_3 hypothetical protein y4021 [Yersinia pestis KIM10+]
gi|51591239|emb|CAH22905.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
32953]
gi|108777637|gb|ABG20156.1| hypothetical protein YPN_3829 [Yersinia pestis Nepal516]
gi|108781137|gb|ABG15195.1| hypothetical protein YPA_3233 [Yersinia pestis Antiqua]
gi|115346057|emb|CAL18923.1| conserved hypothetical protein [Yersinia pestis CO92]
gi|145209177|gb|ABP38584.1| hypothetical protein YPDSF_0162 [Yersinia pestis Pestoides F]
gi|149290120|gb|EDM40197.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis CA88-4125]
gi|152959240|gb|ABS46701.1| ribosomal RNA small subunit methyltransferase B [Yersinia
pseudotuberculosis IP 31758]
gi|165920172|gb|EDR37473.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Orientalis str. F1991016]
gi|165990624|gb|EDR42925.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Antiqua str. E1979001]
gi|169749109|gb|ACA66627.1| sun protein [Yersinia pseudotuberculosis YPIII]
gi|186700179|gb|ACC90808.1| sun protein [Yersinia pseudotuberculosis PB1/+]
gi|229678638|gb|EEO74743.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis Nepal516]
gi|229690490|gb|EEO82544.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis biovar
Orientalis str. India 195]
gi|229696464|gb|EEO86511.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229706346|gb|EEO92353.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis Pestoides A]
gi|320013373|gb|ADV96944.1| 16S rRNA methyltransferase B [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|342852912|gb|AEL71465.1| 16S rRNA methyltransferase B [Yersinia pestis A1122]
gi|391433129|gb|EIQ94498.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-01]
gi|391434056|gb|EIQ95300.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-02]
gi|391436791|gb|EIQ97716.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-03]
gi|391449124|gb|EIR08873.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-04]
gi|391449705|gb|EIR09403.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-05]
gi|391451930|gb|EIR11386.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-06]
gi|391465073|gb|EIR23296.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-07]
gi|391466641|gb|EIR24697.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-08]
gi|391468789|gb|EIR26631.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-09]
gi|391482538|gb|EIR38980.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-10]
gi|391483086|gb|EIR39481.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-12]
gi|391483447|gb|EIR39806.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-11]
gi|391497329|gb|EIR52199.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-13]
gi|391498333|gb|EIR53114.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-15]
gi|391501871|gb|EIR56231.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-14]
gi|391512937|gb|EIR66209.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-16]
gi|391514595|gb|EIR67687.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-19]
gi|391516192|gb|EIR69109.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-25]
gi|391528546|gb|EIR80351.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-29]
gi|391531485|gb|EIR82977.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-34]
gi|391532642|gb|EIR84003.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-32]
gi|391545647|gb|EIR95713.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-36]
gi|391547340|gb|EIR97244.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-42]
gi|391548058|gb|EIR97894.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-45]
gi|391561705|gb|EIS10211.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-46]
gi|391562825|gb|EIS11203.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-47]
gi|391564902|gb|EIS13062.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-48]
gi|391577032|gb|EIS23505.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-52]
gi|391577905|gb|EIS24246.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-53]
gi|391589064|gb|EIS34005.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-55]
gi|391592618|gb|EIS37014.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-54]
gi|391593183|gb|EIS37515.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-56]
gi|391606017|gb|EIS48799.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-60]
gi|391608007|gb|EIS50545.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-58]
gi|391608700|gb|EIS51165.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-59]
gi|391620658|gb|EIS61791.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-61]
gi|391621568|gb|EIS62596.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-63]
gi|391629940|gb|EIS69782.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-64]
gi|391632105|gb|EIS71670.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-65]
gi|391643391|gb|EIS81568.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-71]
gi|391646143|gb|EIS83934.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-72]
gi|391649499|gb|EIS86880.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-66]
gi|391655941|gb|EIS92624.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-76]
gi|391662855|gb|EIS98753.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-88]
gi|391667903|gb|EIT03182.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-89]
gi|391669457|gb|EIT04587.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-90]
gi|391673084|gb|EIT07839.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-91]
gi|391687122|gb|EIT20468.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-93]
gi|391688708|gb|EIT21903.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-92]
gi|391690002|gb|EIT23078.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-94]
gi|391701249|gb|EIT33273.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-95]
gi|391704389|gb|EIT36051.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-96]
gi|391705044|gb|EIT36644.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-98]
gi|391715923|gb|EIT46422.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-99]
gi|391720697|gb|EIT50697.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-100]
gi|391721254|gb|EIT51208.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-101]
gi|391731700|gb|EIT60369.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-102]
gi|391734364|gb|EIT62627.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-103]
gi|391737532|gb|EIT65409.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-113]
gi|411177986|gb|EKS47998.1| 16S rRNA methyltransferase B [Yersinia pestis INS]
Length = 429
Score = 98.2 bits (243), Expect = 9e-19, Method: Composition-based stats.
Identities = 49/120 (40%), Positives = 74/120 (61%), Gaps = 9/120 (7%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
++ FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +I+ +W LK GG L++
Sbjct: 313 DQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGGVLVY 372
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
TCS+ EE+++Q F + H ++ + PG Q LP +D DGFFY+ K+
Sbjct: 373 ATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLP---HPEDGDGFFYAKIIKK 429
>gi|387130879|ref|YP_006293769.1| Ribosomal RNA small subunit methyltransferase B [Methylophaga sp.
JAM7]
gi|386272168|gb|AFJ03082.1| Ribosomal RNA small subunit methyltransferase B [Methylophaga sp.
JAM7]
Length = 435
Score = 98.2 bits (243), Expect = 9e-19, Method: Composition-based stats.
Identities = 47/117 (40%), Positives = 71/117 (60%), Gaps = 7/117 (5%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PCTGSGV+RR+PDI +LR+ DI L+ +L+ LW +LK GG++++ TC
Sbjct: 318 FDRILIDAPCTGSGVIRRHPDIKFLRKPADIPSLAAQQAYLLDKLWPLLKRGGRMVYTTC 377
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS---PGQLLPTVNKK----QDYDGFFYSLFQK 136
S++ E+ Q F H D+ + + PG+ P ++ +DGFFY+ Q+
Sbjct: 378 SIFTAENAHQIEAFLARHPDASLIKADQPPGRETPFGYQRLPGDDAFDGFFYACLQR 434
>gi|254483320|ref|ZP_05096551.1| ribosomal RNA small subunit methyltransferase B [marine gamma
proteobacterium HTCC2148]
gi|214036415|gb|EEB77091.1| ribosomal RNA small subunit methyltransferase B [marine gamma
proteobacterium HTCC2148]
Length = 433
Score = 98.2 bits (243), Expect = 9e-19, Method: Composition-based stats.
Identities = 51/122 (41%), Positives = 71/122 (58%), Gaps = 13/122 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FD++L D PC+ SGV+RR+PD+ LRR+NDI L IL LW +LKPGG+LL+ TC
Sbjct: 313 FDKVLVDAPCSASGVIRRHPDVKSLRRQNDIASLGAQQTAILQGLWPLLKPGGRLLYATC 372
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLN-------SPG---QLLPTVNKKQDYDGFFYSLFQK 136
S+ E+ F K D+I + + G QLLP ++ DG FY+L +K
Sbjct: 373 SILDGENNSVVNSFLKATDDAILVQPELTWGVTAGVGRQLLPNISGP---DGLFYALIEK 429
Query: 137 RK 138
R+
Sbjct: 430 RQ 431
>gi|392543420|ref|ZP_10290557.1| 16S rRNA methyltransferase [Pseudoalteromonas piscicida JCM 20779]
Length = 427
Score = 98.2 bits (243), Expect = 9e-19, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 76/126 (60%), Gaps = 14/126 (11%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + +DRIL D+PC+ +GV+RR+PDI WLRR +DI L +I++ +W +LKPGG
Sbjct: 307 WWDGEQYDRILLDVPCSATGVIRRHPDIKWLRRASDIDNLVTLQAQIIDKIWPLLKPGGT 366
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRL--------NSPG-QLLPTVNKKQDYDGFFY 131
L++ TCS+ +E+++Q F D+ + PG QLLP ++ DGF+Y
Sbjct: 367 LVYATCSVLPQENQQQIARFLSVTPDATLIPLHDADTQTQPGLQLLPGLS-----DGFYY 421
Query: 132 SLFQKR 137
+ K+
Sbjct: 422 AKLTKQ 427
>gi|121999099|ref|YP_001003886.1| sun protein [Halorhodospira halophila SL1]
gi|121590504|gb|ABM63084.1| 16S rRNA m(5)C-967 methyltransferase [Halorhodospira halophila SL1]
Length = 429
Score = 98.2 bits (243), Expect = 9e-19, Method: Composition-based stats.
Identities = 48/120 (40%), Positives = 69/120 (57%), Gaps = 14/120 (11%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
F RIL D PCTGSGV+RR+PDI WLR +D +++ +L LW++L PGG+LL+ TC
Sbjct: 311 FQRILLDAPCTGSGVIRRHPDIKWLRGVDDPARMAAAQRHLLAALWRVLAPGGRLLYATC 370
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPT----------VNKKQDYDGFFYSLFQK 136
S++ EE+E+ F H D+ PG L P + + DGFFY+ ++
Sbjct: 371 SIFPEENEQVVAGFLAEHADA----KPGPLAPVGRCTGSGCQILPGEHGMDGFFYACLER 426
>gi|417844298|ref|ZP_12490343.1| Ribosomal RNA small subunit methyltransferase B [Haemophilus
haemolyticus M21639]
gi|341956929|gb|EGT83344.1| Ribosomal RNA small subunit methyltransferase B [Haemophilus
haemolyticus M21639]
Length = 450
Score = 98.2 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 52/119 (43%), Positives = 71/119 (59%), Gaps = 12/119 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR++ DI +L + KIL+ LW+ LKP G LL+ TC
Sbjct: 333 FDRILLDAPCSATGVIRRHPDIKWLRKETDIAQLVELQKKILSALWEKLKPNGVLLYATC 392
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSP---------GQLLPTVNKKQDYDGFFYSLFQK 136
S+ EE+ EQ F H D+ L+ P Q +P N DGF+Y+ +K
Sbjct: 393 SVLPEENCEQIQAFLNAHADAELLSLPFGDDKSAVGFQFIPQPNSG---DGFYYAKLRK 448
>gi|90019668|ref|YP_525495.1| Sun protein [Saccharophagus degradans 2-40]
gi|89949268|gb|ABD79283.1| ribosomal RNA small subunit methyltransferase B [Saccharophagus
degradans 2-40]
Length = 445
Score = 98.2 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 50/127 (39%), Positives = 74/127 (58%), Gaps = 17/127 (13%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI LRR +D+ KL++ +IL ++W+ L PGGKLL+ TC
Sbjct: 322 FDRILLDAPCSATGVIRRHPDIKLLRRPSDLAKLAQLQAQILRSVWRTLAPGGKLLYATC 381
Query: 87 SLWFEESEEQAIIFSKNHKDSIRL----NSP----------GQLLPTVNKKQDYDGFFYS 132
S+ +E+E F D+ + N P QL P N +DGF+Y+
Sbjct: 382 SVLKQENENIVSHFVSEQNDARHIPLDNNQPVTWGVERPFGRQLFPQEN---GHDGFYYA 438
Query: 133 LFQKRKE 139
L +K ++
Sbjct: 439 LLEKTRD 445
>gi|68249187|ref|YP_248299.1| SUN protein [Haemophilus influenzae 86-028NP]
gi|68057386|gb|AAX87639.1| SUN protein [Haemophilus influenzae 86-028NP]
Length = 450
Score = 98.2 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 53/120 (44%), Positives = 70/120 (58%), Gaps = 12/120 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR++ DI +L + KIL+ LW+ LKP G LL+ TC
Sbjct: 333 FDRILLDAPCSATGVIRRHPDIKWLRKETDIAQLVELQKKILSALWEKLKPNGVLLYATC 392
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSP---------GQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ EQ F H D+ L P Q +P N DGF+Y+ KR
Sbjct: 393 SVLPEENCEQIQAFLNAHADAELLPLPVSDDKSAVGFQFIPQPNSG---DGFYYAKLLKR 449
>gi|407681929|ref|YP_006797103.1| 16S rRNA methyltransferase B [Alteromonas macleodii str. 'English
Channel 673']
gi|407243540|gb|AFT72726.1| 16S rRNA methyltransferase B [Alteromonas macleodii str. 'English
Channel 673']
Length = 439
Score = 98.2 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 51/128 (39%), Positives = 75/128 (58%), Gaps = 12/128 (9%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ K FDRIL D PC+ +GV+RR+PDI WLR+ NDI L++ +IL LW +LKPGG
Sbjct: 315 WWDGKPFDRILLDAPCSATGVIRRHPDIRWLRKANDIDNLAQLQRRILETLWGLLKPGGT 374
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSI--------RLNSPG-QLLPTVNKKQDYDGFFY 131
LL+ TCS+ +E+ Q F + D+ ++ PG Q+ P +Q DGF+Y
Sbjct: 375 LLYATCSILPKENMAQIQQFLADTPDASLSPIVKTETVDKPGRQITP---GEQQMDGFYY 431
Query: 132 SLFQKRKE 139
+ K +
Sbjct: 432 ARLVKSAD 439
>gi|113968373|ref|YP_732166.1| sun protein [Shewanella sp. MR-4]
gi|113883057|gb|ABI37109.1| sun protein [Shewanella sp. MR-4]
Length = 429
Score = 98.2 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 46/123 (37%), Positives = 78/123 (63%), Gaps = 8/123 (6%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+++ + FDRIL D PC+ +GV+RR+PDI WLR+ +DI++L++ +IL++ WK LKPGG
Sbjct: 305 WWQGEQFDRILLDAPCSATGVIRRHPDIKWLRKNHDIEELAELQRQILDHCWKWLKPGGT 364
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVN-------KKQDYDGFFYSL 133
LL+ TCS+ +E+ +Q F D+ +L++ Q + + + + DGF+Y+
Sbjct: 365 LLYATCSILPQENRDQISAFLARTADA-KLDTLAQQASSQDIGWQITPGQHNMDGFYYAR 423
Query: 134 FQK 136
K
Sbjct: 424 LLK 426
>gi|117918492|ref|YP_867684.1| sun protein [Shewanella sp. ANA-3]
gi|117610824|gb|ABK46278.1| sun protein [Shewanella sp. ANA-3]
Length = 429
Score = 98.2 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 46/123 (37%), Positives = 78/123 (63%), Gaps = 8/123 (6%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+++ + FDRIL D PC+ +GV+RR+PDI WLR+ +DI++L++ +IL++ WK LKPGG
Sbjct: 305 WWQGEQFDRILLDAPCSATGVIRRHPDIKWLRKNHDIEELAELQRQILDHCWKWLKPGGT 364
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVN-------KKQDYDGFFYSL 133
LL+ TCS+ +E+ +Q F D+ +L++ Q + + + + DGF+Y+
Sbjct: 365 LLYATCSILPQENRDQISAFLARTADA-KLDTLAQQASSQDIGWQITPGQHNMDGFYYAR 423
Query: 134 FQK 136
K
Sbjct: 424 LLK 426
>gi|309751781|gb|ADO81765.1| 16S rRNA m5C967 methyltransferase [Haemophilus influenzae R2866]
Length = 450
Score = 98.2 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 53/120 (44%), Positives = 70/120 (58%), Gaps = 12/120 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR++ DI +L + KIL+ LW+ LKP G LL+ TC
Sbjct: 333 FDRILLDAPCSATGVIRRHPDIKWLRKETDIAQLVELQKKILSALWEKLKPNGVLLYATC 392
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSP---------GQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ EQ F H D+ L P Q +P N DGF+Y+ KR
Sbjct: 393 SVLPEENCEQIQAFLNAHADAELLPLPVSDDKSAVGFQFIPQPNSG---DGFYYAKLLKR 449
>gi|329295652|ref|ZP_08252988.1| 16S rRNA methyltransferase B [Plautia stali symbiont]
Length = 428
Score = 98.2 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 50/117 (42%), Positives = 69/117 (58%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L+ +IL +W LK GG LL+ TC
Sbjct: 315 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIDELAALQREILAAIWPRLKSGGTLLYATC 374
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSP-GQL-----LPTVNKKQDYDGFFYSLFQKR 137
S+ +E+++Q F H D++ P GQL P ++ DGFFY K+
Sbjct: 375 SVLPQENQQQIDAFLATHDDAVPQALPQGQLNGWQVFPAIDGG---DGFFYVKLMKK 428
>gi|148826743|ref|YP_001291496.1| potassium transporter peripheral membrane component [Haemophilus
influenzae PittEE]
gi|148716903|gb|ABQ99113.1| potassium transporter peripheral membrane component [Haemophilus
influenzae PittEE]
Length = 451
Score = 98.2 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 53/120 (44%), Positives = 71/120 (59%), Gaps = 12/120 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR++ DI +L + KIL+ LW+ LKP G LL+ TC
Sbjct: 333 FDRILLDAPCSATGVIRRHPDIKWLRKETDIAQLVELQKKILSALWEKLKPNGVLLYATC 392
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSP---------GQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ EQ F H D+ L+ P Q +P N DGF+Y+ KR
Sbjct: 393 SVLPEENCEQIQEFLNAHADAELLSLPFSDDKSAVGFQFIPQPNSG---DGFYYAKLLKR 449
>gi|429088358|ref|ZP_19151090.1| Ribosomal RNA small subunit methyltransferase B [Cronobacter
universalis NCTC 9529]
gi|426508161|emb|CCK16202.1| Ribosomal RNA small subunit methyltransferase B [Cronobacter
universalis NCTC 9529]
Length = 200
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 76/133 (57%), Gaps = 11/133 (8%)
Query: 13 KKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNN 70
K + RF + + FDRIL D PC+ +GV+RR+PDI WLRR +DI +L++ IL+
Sbjct: 71 KVGDGRFPATWCGDTQFDRILLDAPCSATGVIRRHPDIKWLRRDSDISELAQLQSDILDA 130
Query: 71 LWKMLKPGGKLLFVTCSLWFEESEEQAIIF-----SKNHKDSIRLNSPG-QLLPTVNKKQ 124
+W LKPGG LL+ TCS+ EE+ EQ F + + +PG Q LP +
Sbjct: 131 IWPHLKPGGTLLYATCSILPEENSEQIRAFLTRTPNAQLDGTGSAQTPGIQNLPGAAEG- 189
Query: 125 DYDGFFYSLFQKR 137
DGFFY+ K+
Sbjct: 190 --DGFFYAKLIKK 200
>gi|386826941|ref|ZP_10114048.1| ribosomal RNA small subunit methyltransferase RsmB [Beggiatoa alba
B18LD]
gi|386427825|gb|EIJ41653.1| ribosomal RNA small subunit methyltransferase RsmB [Beggiatoa alba
B18LD]
Length = 444
Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 47/124 (37%), Positives = 77/124 (62%), Gaps = 7/124 (5%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRIL D+PC+ SGV+RR+PDI LR+ NDI L ++L +W +LKP GK
Sbjct: 314 WWDGQLFDRILLDVPCSASGVIRRHPDIKHLRQANDISALLAQQARLLTVIWSLLKPNGK 373
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRL---NSPGQLLPT----VNKKQDYDGFFYSL 133
LL+ TCS++ +E+ Q F ++H D++ + G LP ++ + ++DGF+Y+
Sbjct: 374 LLYATCSVFSQENHLQLQHFLQSHPDALAVPLKAEWGHALPVGRQILSGEFNFDGFYYAC 433
Query: 134 FQKR 137
K+
Sbjct: 434 LVKQ 437
>gi|386266647|ref|YP_005830139.1| 16S rRNA m5C967 methyltransferase [Haemophilus influenzae R2846]
gi|309973883|gb|ADO97084.1| 16S rRNA m5C967 methyltransferase [Haemophilus influenzae R2846]
Length = 451
Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 53/120 (44%), Positives = 71/120 (59%), Gaps = 12/120 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR++ DI +L + KIL+ LW+ LKP G LL+ TC
Sbjct: 333 FDRILLDAPCSATGVIRRHPDIKWLRKETDIAQLVELQKKILSALWEKLKPNGVLLYATC 392
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSP---------GQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ EQ F H D+ L+ P Q +P N DGF+Y+ KR
Sbjct: 393 SVLPEENCEQIQEFLNAHADAELLSLPFSDDKSAVGFQFIPQPNSG---DGFYYAKLLKR 449
>gi|88860599|ref|ZP_01135236.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Pseudoalteromonas
tunicata D2]
gi|88817194|gb|EAR27012.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Pseudoalteromonas
tunicata D2]
Length = 429
Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 48/126 (38%), Positives = 74/126 (58%), Gaps = 14/126 (11%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FD+IL D+PC+ +GV+RR+PDI WLRR DI++L+ IL+ +W +LK GG
Sbjct: 308 WWDKETFDKILLDVPCSATGVIRRHPDIKWLRRAADIEQLALLQSSILDKIWPLLKAGGT 367
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRL--------NSPG-QLLPTVNKKQDYDGFFY 131
L++ TCS+ +E+++Q F D+I PG Q LP + DGF+Y
Sbjct: 368 LVYATCSVLPQENKDQVKAFLARTDDAIHQPLHDLDTHEQPGWQFLPELT-----DGFYY 422
Query: 132 SLFQKR 137
+ KR
Sbjct: 423 AKITKR 428
>gi|453066263|gb|EMF07212.1| 16S rRNA methyltransferase B [Serratia marcescens VGH107]
Length = 429
Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 46/114 (40%), Positives = 69/114 (60%), Gaps = 7/114 (6%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
+K FDRIL D PC+ +GV+RR+PDI WLRR DI +L+ +IL +W LK GG +++
Sbjct: 313 DKQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAALQAEILEAVWPHLKSGGVMVY 372
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSIRLNS-----PGQLLPTVNKKQDYDGFFYS 132
TCS+ +E+ Q F + H D+ + + PG+ + +D DGFFY+
Sbjct: 373 ATCSILPDENSNQIAAFLQRHADAKLVETGDAQRPGR--QNIPHPEDGDGFFYA 424
>gi|448244229|ref|YP_007408282.1| 16S rRNA m(5)C967 methyltransferase, SAM-dependent [Serratia
marcescens WW4]
gi|445214593|gb|AGE20263.1| 16S rRNA m(5)C967 methyltransferase, SAM-dependent [Serratia
marcescens WW4]
Length = 429
Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 46/114 (40%), Positives = 69/114 (60%), Gaps = 7/114 (6%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
+K FDRIL D PC+ +GV+RR+PDI WLRR DI +L+ +IL +W LK GG +++
Sbjct: 313 DKQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAALQAEILEAVWPHLKSGGVMVY 372
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSIRLNS-----PGQLLPTVNKKQDYDGFFYS 132
TCS+ +E+ Q F + H D+ + + PG+ + +D DGFFY+
Sbjct: 373 ATCSILPDENSNQIAAFLQRHADAKLVETGDAQRPGR--QNIPHPEDGDGFFYA 424
>gi|418774077|ref|ZP_13330048.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 33953]
gi|392751579|gb|EJA08527.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. CVM 33953]
Length = 429
Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 48/116 (41%), Positives = 71/116 (61%), Gaps = 7/116 (6%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LKPGG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKD-----SIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ +Q F + D + + PGQ + ++ DGFFY+ K+
Sbjct: 376 SVLPEENRDQIKTFLQRTPDVALSETGTPDQPGQ--QNLPGGEEGDGFFYAKLIKK 429
>gi|407069538|ref|ZP_11100376.1| 16S rRNA methyltransferase B [Vibrio cyclitrophicus ZF14]
Length = 426
Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 46/116 (39%), Positives = 76/116 (65%), Gaps = 8/116 (6%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR +DI L++ +I++ +W+ LK GG +++ TC
Sbjct: 313 FDRILLDAPCSATGVIRRHPDIKWLRRASDIDALAELQSEIMDAMWRQLKEGGTMVYATC 372
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ +E+ Q F + +++ + S PG Q+LP ++D DGF+Y++ K+
Sbjct: 373 SITPQENVLQVKAFLERTENATLVGSDIENPGRQILP---GEEDMDGFYYAVLVKQ 425
>gi|198244494|ref|YP_002217372.1| 16S rRNA methyltransferase GidB [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|375120886|ref|ZP_09766053.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Dublin str. SD3246]
gi|445144552|ref|ZP_21387149.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Dublin str. SL1438]
gi|445155492|ref|ZP_21392322.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Dublin str. HWS51]
gi|224493260|sp|B5FJI4.1|RSMB_SALDC RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|197939010|gb|ACH76343.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|326625153|gb|EGE31498.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Dublin str. SD3246]
gi|444846719|gb|ELX71875.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Dublin str. SL1438]
gi|444848966|gb|ELX74084.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Dublin str. HWS51]
Length = 429
Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 48/116 (41%), Positives = 71/116 (61%), Gaps = 7/116 (6%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LKPGG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIVELAQLQAEILDAVWPRLKPGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----RLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ +Q F + D+ + PGQ + ++ DGFFY+ K+
Sbjct: 376 SVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQ--QNLPGGEEGDGFFYAKLIKK 429
>gi|227115242|ref|ZP_03828898.1| 16S rRNA methyltransferase B [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 429
Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 48/120 (40%), Positives = 73/120 (60%), Gaps = 9/120 (7%)
Query: 23 KNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLL 82
+ + FDR+L D PC+ +GV+RR+PDI WLRR DI++L +IL+ +W LK GG L+
Sbjct: 312 EGRVFDRVLLDAPCSATGVIRRHPDIKWLRRDRDIEELVALQKEILDAIWPHLKTGGTLV 371
Query: 83 FVTCSLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQK 136
+ TCS+ +E+ +Q F H D+ +++ PG Q+LP + DGFFY+ K
Sbjct: 372 YATCSILPQENTQQVADFLTRHTDATLVDTGTREMPGIQMLPHADGG---DGFFYAKLVK 428
>gi|254467784|ref|ZP_05081190.1| sun protein [beta proteobacterium KB13]
gi|207086594|gb|EDZ63877.1| sun protein [beta proteobacterium KB13]
Length = 412
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 73/122 (59%), Gaps = 13/122 (10%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
NK +DRIL D PC+GSGVVRRN DI +R++ DI+K S ++L WK+LK GGKLL+
Sbjct: 294 NKRYDRILIDAPCSGSGVVRRNIDIKLMRKQQDIEKFSNQQLQLLEEGWKILKSGGKLLY 353
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSIRLN---------SPGQLLPTVNKKQDYDGFFYSLF 134
VTCS++ E+E + F +KD+ + QL+P Q +DG F+ +F
Sbjct: 354 VTCSIFKHENENVVMKFLSKNKDAASQDLIIPNGFKYQNTQLIPN----QFHDGLFFKIF 409
Query: 135 QK 136
K
Sbjct: 410 SK 411
>gi|50122921|ref|YP_052088.1| 16S rRNA methyltransferase GidB [Pectobacterium atrosepticum
SCRI1043]
gi|81643776|sp|Q6D000.1|RSMB_ERWCT RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|49613447|emb|CAG76898.1| Sun protein [Pectobacterium atrosepticum SCRI1043]
Length = 429
Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 48/118 (40%), Positives = 72/118 (61%), Gaps = 9/118 (7%)
Query: 25 KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 84
+ FDRIL D PC+ +GV+RR+PDI WLRR DI++L +IL+ +W LK GG +++
Sbjct: 314 RVFDRILLDAPCSATGVIRRHPDIKWLRRDRDIEELVALQKEILDAIWPHLKTGGTMVYA 373
Query: 85 TCSLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQK 136
TCS+ +E+ +Q F H D+ +++ PG Q+LP + DGFFY+ K
Sbjct: 374 TCSILPQENTQQVTGFLSRHADAALVDTGTSEIPGIQILPHADSG---DGFFYAKLVK 428
>gi|303249608|ref|ZP_07335814.1| SUN protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
gi|307253218|ref|ZP_07535093.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|302651541|gb|EFL81691.1| SUN protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
gi|306859306|gb|EFM91344.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
Length = 432
Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 52/119 (43%), Positives = 72/119 (60%), Gaps = 11/119 (9%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR++NDI +L KIL LW LKP G L++ TC
Sbjct: 317 FDRILLDAPCSATGVIRRHPDIKWLRKENDIAELVALQEKILEALWGRLKPRGVLVYATC 376
Query: 87 SLWFEESEEQAIIFSKNHKDS--IRLNSPG------QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ EQ F +H D+ + ++ G Q P ++Q DGFFY+ K+
Sbjct: 377 SVLPEENGEQITRFVASHSDAEWVEMDFNGEKTAMKQFFP---QEQGGDGFFYAKLIKQ 432
>gi|340000948|ref|YP_004731832.1| sun protein [Salmonella bongori NCTC 12419]
gi|339514310|emb|CCC32073.1| sun protein [Salmonella bongori NCTC 12419]
Length = 429
Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 73/117 (62%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LKPGG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PGQL-LPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ +Q F + +++ + PGQ LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSDQIHAFLQRTPNAMLSQTGIPDQPGQQNLPGA---EEGDGFFYAKLIKK 429
>gi|261856665|ref|YP_003263948.1| sun protein [Halothiobacillus neapolitanus c2]
gi|261837134|gb|ACX96901.1| sun protein [Halothiobacillus neapolitanus c2]
Length = 437
Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 49/128 (38%), Positives = 74/128 (57%), Gaps = 12/128 (9%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRILAD+PC+ +GV+RR+PDI LRR D+ L + IL+ LW +LKPGG+
Sbjct: 309 WWDGQPFDRILADVPCSATGVIRRHPDIKRLRRPEDLPVLVERQAVILDALWSLLKPGGR 368
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKD------SIRLNSP----GQLL--PTVNKKQDYDG 128
+++ TCS+ E+ Q F + H D S+ P GQ L + +DG
Sbjct: 369 MVYATCSILDRENSAQVAAFLRRHGDARALPLSVDWGEPRQIDGQFLGQQVFPVSEGHDG 428
Query: 129 FFYSLFQK 136
FFY++ +K
Sbjct: 429 FFYAVLEK 436
>gi|114045538|ref|YP_736088.1| sun protein [Shewanella sp. MR-7]
gi|113886980|gb|ABI41031.1| sun protein [Shewanella sp. MR-7]
Length = 429
Score = 97.4 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 46/123 (37%), Positives = 78/123 (63%), Gaps = 8/123 (6%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+++ + FDRIL D PC+ +GV+RR+PDI WLR+ +DI++L++ +IL++ WK LKPGG
Sbjct: 305 WWQGEQFDRILLDAPCSATGVIRRHPDIKWLRKNHDIEELAELQRQILDHSWKWLKPGGT 364
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVN-------KKQDYDGFFYSL 133
LL+ TCS+ +E+ +Q F D+ +L++ Q + + + + DGF+Y+
Sbjct: 365 LLYATCSILPQENRDQISAFLARTADA-KLDTLAQQASSQDIGWQITPGQHNMDGFYYAR 423
Query: 134 FQK 136
K
Sbjct: 424 LLK 426
>gi|378696823|ref|YP_005178781.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Haemophilus
influenzae 10810]
gi|301169342|emb|CBW28941.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Haemophilus
influenzae 10810]
Length = 451
Score = 97.4 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 53/120 (44%), Positives = 71/120 (59%), Gaps = 12/120 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR++ DI +L + KIL+ LW+ LKP G LL+ TC
Sbjct: 333 FDRILLDSPCSATGVIRRHPDIKWLRKETDIAQLVELQKKILSALWEKLKPNGVLLYATC 392
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSP---------GQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ EQ F H D+ L+ P Q +P N DGF+Y+ KR
Sbjct: 393 SVLPEENCEQIQEFLNAHADAELLSLPFSDDKSAVGFQFIPQPNSG---DGFYYAKLLKR 449
>gi|227328919|ref|ZP_03832943.1| 16S rRNA methyltransferase B [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 429
Score = 97.4 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 48/120 (40%), Positives = 73/120 (60%), Gaps = 9/120 (7%)
Query: 23 KNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLL 82
+ + FDRIL D PC+ +GV+RR+PDI WLRR DI++L +IL+ +W LK GG ++
Sbjct: 312 EGRVFDRILLDAPCSATGVIRRHPDIKWLRRDRDIEELVALQKEILDAIWPYLKTGGTMV 371
Query: 83 FVTCSLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQK 136
+ TCS+ +E+ +Q F H D+ +++ PG Q+LP + DGFFY+ K
Sbjct: 372 YATCSILPQENAQQVTDFLTRHADAKLIDTGTREMPGIQMLPHADGG---DGFFYAKLVK 428
>gi|407685819|ref|YP_006800992.1| 16S rRNA methyltransferase B [Alteromonas macleodii str. 'Balearic
Sea AD45']
gi|407289199|gb|AFT93511.1| 16S rRNA methyltransferase B [Alteromonas macleodii str. 'Balearic
Sea AD45']
Length = 439
Score = 97.4 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 51/125 (40%), Positives = 74/125 (59%), Gaps = 12/125 (9%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ K FDRIL D PC+ +GV+RR+PDI WLR+ NDI L++ +IL LW +LKPGG
Sbjct: 315 WWDGKPFDRILLDAPCSATGVIRRHPDIRWLRKANDIDNLAQLQRRILETLWGLLKPGGT 374
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSI--------RLNSPG-QLLPTVNKKQDYDGFFY 131
LL+ TCS+ +E+ Q F + D+ ++ PG Q+ P +Q DGF+Y
Sbjct: 375 LLYATCSILPKENIAQIQQFLADTPDASLSPIVKTETVDKPGRQITP---GEQQMDGFYY 431
Query: 132 SLFQK 136
+ K
Sbjct: 432 ARLVK 436
>gi|336313695|ref|ZP_08568634.1| methionyl-tRNA formyltransferase [Shewanella sp. HN-41]
gi|335862716|gb|EGM67908.1| methionyl-tRNA formyltransferase [Shewanella sp. HN-41]
Length = 429
Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 49/123 (39%), Positives = 77/123 (62%), Gaps = 8/123 (6%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRIL D PC+ +GV+RR+PDI WLR+ +DI++L++ +IL++ WK LKPGG
Sbjct: 305 WWHGEQFDRILLDAPCSATGVIRRHPDIKWLRKNHDIEELAELQQQILDHCWKWLKPGGT 364
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPT------VNKKQD-YDGFFYSL 133
LL+ TCS+ +E+ +Q F D+ +L++ Q T + QD DGF+Y+
Sbjct: 365 LLYATCSILPQENRDQINAFLARTADA-KLDTLTQQASTQDIGWQITPGQDNMDGFYYAR 423
Query: 134 FQK 136
K
Sbjct: 424 LLK 426
>gi|334702669|ref|ZP_08518535.1| 16S rRNA methyltransferase B [Aeromonas caviae Ae398]
Length = 430
Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 51/115 (44%), Positives = 73/115 (63%), Gaps = 12/115 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI++L++ +IL+ LW LK GG LL+ TC
Sbjct: 314 FDRILLDAPCSATGVIRRHPDIKWLRRDQDIRELAELQRRILDALWGKLKQGGTLLYATC 373
Query: 87 SLWFEESEEQAIIFSKNHKDS--IRLNS------PG-QLLPTVNKKQDYDGFFYS 132
S+ EE+ EQ F + D+ + L++ PG Q LP + + DGF+Y+
Sbjct: 374 SVLPEENREQIRAFLADTPDARLVPLHAEDTPACPGRQFLP---GEAEMDGFYYA 425
>gi|421728647|ref|ZP_16167799.1| 16S rRNA methyltransferase B [Klebsiella oxytoca M5al]
gi|410370556|gb|EKP25285.1| 16S rRNA methyltransferase B [Klebsiella oxytoca M5al]
Length = 429
Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 50/118 (42%), Positives = 71/118 (60%), Gaps = 11/118 (9%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPG-------QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ +Q F + D++ LN G Q LP + DGFFY+ K+
Sbjct: 376 SVLPEENSQQIKAFLQRTADAV-LNETGDADLPGQQNLPGAEQG---DGFFYAKLIKK 429
>gi|407693308|ref|YP_006818097.1| 16S rRNA methyltransferase B [Actinobacillus suis H91-0380]
gi|407389365|gb|AFU19858.1| 16S rRNA methyltransferase B [Actinobacillus suis H91-0380]
Length = 391
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 72/114 (63%), Gaps = 11/114 (9%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR++ DI +L++ KIL+ LW+ LKP G LL+ TC
Sbjct: 275 FDRILLDAPCSATGVIRRHPDIKWLRKEQDIAELAELQSKILHALWQRLKPNGVLLYATC 334
Query: 87 SLWFEESEEQAIIFSKNHKDS--IRLNSPG------QLLPTVNKKQDYDGFFYS 132
S+ EE+E+Q F D+ + ++ G Q P +++ DGFFY+
Sbjct: 335 SILPEENEQQINRFVAQQTDAKLVEMDFNGEKTAMKQFFP---QEKGGDGFFYA 385
>gi|238754203|ref|ZP_04615561.1| Ribosomal RNA small subunit methyltransferase B [Yersinia ruckeri
ATCC 29473]
gi|238707699|gb|EEQ00059.1| Ribosomal RNA small subunit methyltransferase B [Yersinia ruckeri
ATCC 29473]
Length = 429
Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 47/115 (40%), Positives = 72/115 (62%), Gaps = 9/115 (7%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
N+ FDRIL D PC+ +GV+RR+PDI WLRR +DI +L++ +IL +W LK G +++
Sbjct: 313 NQLFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELAQLQSEILEAIWPKLKKDGVMVY 372
Query: 84 VTCSLWFEESEEQAIIFSKNHKDS--IRLNSPGQL----LPTVNKKQDYDGFFYS 132
TCS+ EE+++Q F + H ++ + +P Q LP +D DGFFY+
Sbjct: 373 ATCSILPEENQQQIANFLQRHPEARLVETGTPAQPGKQNLP---HPEDGDGFFYA 424
>gi|407698282|ref|YP_006823069.1| 16S rRNA methyltransferase B [Alteromonas macleodii str. 'Black Sea
11']
gi|407247429|gb|AFT76614.1| 16S rRNA methyltransferase B [Alteromonas macleodii str. 'Black Sea
11']
Length = 439
Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 50/128 (39%), Positives = 76/128 (59%), Gaps = 12/128 (9%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ K FDRIL D PC+ +GV+RR+PDI WLR+ +DI L++ +IL+ LW +LKPGG
Sbjct: 315 WWDGKPFDRILLDAPCSATGVIRRHPDIRWLRKASDIDNLAQLQRRILDTLWGLLKPGGT 374
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSI--------RLNSPG-QLLPTVNKKQDYDGFFY 131
LL+ TCS+ +E+ Q F + D+ ++ PG Q+ P +Q DGF+Y
Sbjct: 375 LLYATCSILPKENMAQIKQFLADTPDATLSPLVKTETVDKPGRQITP---GEQQMDGFYY 431
Query: 132 SLFQKRKE 139
+ K +
Sbjct: 432 ARLVKSSD 439
>gi|163751682|ref|ZP_02158901.1| sun protein [Shewanella benthica KT99]
gi|161328421|gb|EDP99577.1| sun protein [Shewanella benthica KT99]
Length = 425
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 47/122 (38%), Positives = 71/122 (58%), Gaps = 6/122 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+++ FDRIL D PC+ +GV+RR+PDI WLR++ DI +L+ KIL++ W+ LKPGG
Sbjct: 303 WWQGDKFDRILLDAPCSATGVIRRHPDIKWLRKQTDIDELASLQSKILDHCWQWLKPGGT 362
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLP------TVNKKQDYDGFFYSLF 134
LL+ TCS+ +E+E+Q F D+ Q P ++ DGF+Y+
Sbjct: 363 LLYATCSILPQENEQQIRSFLARADDATLFPISEQPNPDDIGWQITPGTENMDGFYYARL 422
Query: 135 QK 136
K
Sbjct: 423 VK 424
>gi|85060226|ref|YP_455928.1| 16S rRNA methyltransferase B [Sodalis glossinidius str.
'morsitans']
gi|123738922|sp|Q2NQQ2.1|RSMB_SODGM RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|84780746|dbj|BAE75523.1| putative rRNA methylase [Sodalis glossinidius str. 'morsitans']
Length = 433
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 51/119 (42%), Positives = 70/119 (58%), Gaps = 9/119 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL W++LK GG LL+ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDGDIAELAELQRQILCAAWRVLKLGGTLLYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKRKE 139
S+ EE+ Q F +H D++ + PG Q LP DGFFY+ K +
Sbjct: 376 SILPEENRGQIAAFLADHPDALLQETGDAAAPGLQCLPVPTSG---DGFFYAKMIKETQ 431
>gi|386743663|ref|YP_006216842.1| 16S rRNA methyltransferase B [Providencia stuartii MRSN 2154]
gi|384480356|gb|AFH94151.1| 16S rRNA methyltransferase B [Providencia stuartii MRSN 2154]
Length = 428
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 50/118 (42%), Positives = 73/118 (61%), Gaps = 8/118 (6%)
Query: 25 KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 84
+ FDRIL D PC+ +GV+RR+PDI WLRR +DI +L++ KIL ++W LK GG L++
Sbjct: 314 QLFDRILLDAPCSATGVIRRHPDIKWLRRDSDINELTELQAKILESIWPYLKVGGTLVYA 373
Query: 85 TCSLWFEESEEQAIIFSKNHKDSIRLNSPG----QLLPTVNKKQDYDGFFYSLFQKRK 138
TCS+ EE+ Q F H ++ LN Q+LP++ DGFFY+ K++
Sbjct: 374 TCSIMPEENSLQIKNFLAKHPEA-SLNDGTTAGLQILPSITGG---DGFFYARLVKQE 427
>gi|170718224|ref|YP_001785246.1| sun protein [Haemophilus somnus 2336]
gi|168826353|gb|ACA31724.1| sun protein [Haemophilus somnus 2336]
Length = 462
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 51/118 (43%), Positives = 70/118 (59%), Gaps = 11/118 (9%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR+++DI L + +IL LWK LKP G L++ TC
Sbjct: 345 FDRILLDAPCSATGVIRRHPDIKWLRQESDITPLVQLQGQILEALWKKLKPQGILVYATC 404
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSP--------GQLLPTVNKKQDYDGFFYSLFQK 136
SL EE+ +Q F H D+ P Q +PT +Q DGF+Y+ +K
Sbjct: 405 SLLPEENSQQIQHFLAKHNDAKLEPLPFTIGEEIGHQFVPT---EQGGDGFYYAKLRK 459
>gi|183600721|ref|ZP_02962214.1| hypothetical protein PROSTU_04317 [Providencia stuartii ATCC 25827]
gi|188019701|gb|EDU57741.1| ribosomal RNA small subunit methyltransferase B [Providencia
stuartii ATCC 25827]
Length = 428
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 50/118 (42%), Positives = 73/118 (61%), Gaps = 8/118 (6%)
Query: 25 KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 84
+ FDRIL D PC+ +GV+RR+PDI WLRR +DI +L++ KIL ++W LK GG L++
Sbjct: 314 QLFDRILLDAPCSATGVIRRHPDIKWLRRDSDINELTELQAKILESIWPYLKVGGTLVYA 373
Query: 85 TCSLWFEESEEQAIIFSKNHKDSIRLNSPG----QLLPTVNKKQDYDGFFYSLFQKRK 138
TCS+ EE+ Q F H ++ LN Q+LP++ DGFFY+ K++
Sbjct: 374 TCSIMPEENSLQIKNFLAKHPEA-SLNDGTTAGLQILPSITGG---DGFFYARLVKQE 427
>gi|312173998|emb|CBX82251.1| Ribosomal RNA small subunit methyltransferase B [Erwinia amylovora
ATCC BAA-2158]
Length = 429
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 50/117 (42%), Positives = 71/117 (60%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L+ +IL+ +W LK GG +L+ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAALQQQILDAVWPHLKSGGTMLYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----RLNSPG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + H ++ L PG Q+LP V+ DGF+Y+ K+
Sbjct: 376 SVLPEENHLQISQFLQRHANAALVATGDLTQPGIQVLPQVDGG---DGFYYAKLVKQ 429
>gi|292489815|ref|YP_003532705.1| ribosomal RNA small subunit methyltransferase B [Erwinia amylovora
CFBP1430]
gi|291555252|emb|CBA23523.1| Ribosomal RNA small subunit methyltransferase B [Erwinia amylovora
CFBP1430]
Length = 456
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 50/117 (42%), Positives = 71/117 (60%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L+ +IL+ +W LK GG +L+ TC
Sbjct: 343 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAALQQQILDAVWPHLKSGGTMLYATC 402
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----RLNSPG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + H ++ L PG Q+LP V+ DGF+Y+ K+
Sbjct: 403 SVLPEENHLQISQFLQRHANAALVATGDLTQPGIQVLPQVDGG---DGFYYAKLVKQ 456
>gi|292900857|ref|YP_003540226.1| ribosomal RNA small subunit methyltransferase B [Erwinia amylovora
ATCC 49946]
gi|428786796|ref|ZP_19004273.1| Ribosomal RNA small subunit methyltransferase B [Erwinia amylovora
ACW56400]
gi|291200705|emb|CBJ47838.1| ribosomal RNA small subunit methyltransferase B [Erwinia amylovora
ATCC 49946]
gi|426274637|gb|EKV52378.1| Ribosomal RNA small subunit methyltransferase B [Erwinia amylovora
ACW56400]
Length = 429
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 50/117 (42%), Positives = 71/117 (60%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L+ +IL+ +W LK GG +L+ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAALQQQILDAVWPHLKSGGTMLYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----RLNSPG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + H ++ L PG Q+LP V+ DGF+Y+ K+
Sbjct: 376 SVLPEENHLQISQFLQRHANAALVATGDLTQPGIQVLPQVDGG---DGFYYAKLVKQ 429
>gi|423105145|ref|ZP_17092847.1| ribosomal RNA small subunit methyltransferase B [Klebsiella oxytoca
10-5242]
gi|376381911|gb|EHS94647.1| ribosomal RNA small subunit methyltransferase B [Klebsiella oxytoca
10-5242]
Length = 429
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 46/114 (40%), Positives = 70/114 (61%), Gaps = 3/114 (2%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQSEILDAVWPHLKTGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPGQLLP---TVNKKQDYDGFFYSLFQKR 137
S+ EE+ +Q F + D++ + LP + ++ DGFFY+ K+
Sbjct: 376 SVLPEENSQQIKAFLQRTADAVLSETGSADLPGQQNLPGAEEGDGFFYAKLIKK 429
>gi|375257649|ref|YP_005016819.1| 16S rRNA methyltransferase B [Klebsiella oxytoca KCTC 1686]
gi|365907127|gb|AEX02580.1| 16S rRNA methyltransferase B [Klebsiella oxytoca KCTC 1686]
Length = 429
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 46/114 (40%), Positives = 70/114 (61%), Gaps = 3/114 (2%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQSEILDAVWPHLKTGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPGQLLP---TVNKKQDYDGFFYSLFQKR 137
S+ EE+ +Q F + D++ + LP + ++ DGFFY+ K+
Sbjct: 376 SVLPEENSQQIKAFLQRTADAVLSETGSADLPGQQNLPGAEEGDGFFYAKLIKK 429
>gi|402843875|ref|ZP_10892259.1| ribosomal RNA small subunit methyltransferase B [Klebsiella sp.
OBRC7]
gi|402276040|gb|EJU25169.1| ribosomal RNA small subunit methyltransferase B [Klebsiella sp.
OBRC7]
Length = 431
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 46/114 (40%), Positives = 70/114 (61%), Gaps = 3/114 (2%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 318 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQSEILDAVWPHLKTGGTLVYATC 377
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPGQLLP---TVNKKQDYDGFFYSLFQKR 137
S+ EE+ +Q F + D++ + LP + ++ DGFFY+ K+
Sbjct: 378 SVLPEENSQQIKAFLQRTADAVLSETGSADLPGQQNLPGAEEGDGFFYAKLIKK 431
>gi|397660265|ref|YP_006500967.1| ribosomal RNA small subunit methyltransferase B [Klebsiella oxytoca
E718]
gi|394348312|gb|AFN34433.1| Ribosomal RNA small subunit methyltransferase B [Klebsiella oxytoca
E718]
Length = 431
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 46/114 (40%), Positives = 70/114 (61%), Gaps = 3/114 (2%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 318 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQSEILDAVWPHLKTGGTLVYATC 377
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPGQLLP---TVNKKQDYDGFFYSLFQKR 137
S+ EE+ +Q F + D++ + LP + ++ DGFFY+ K+
Sbjct: 378 SVLPEENSQQIKAFLQRTADAVLSETGSADLPGQQNLPGAEEGDGFFYAKLIKK 431
>gi|123444066|ref|YP_001008036.1| 16S rRNA methyltransferase B [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|224493291|sp|A1JRZ3.1|RSMB_YERE8 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|122091027|emb|CAL13910.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 429
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 46/120 (38%), Positives = 74/120 (61%), Gaps = 9/120 (7%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
++ FDRIL D PC+ +GV+RR+PDI WLRR +DI +L++ +I+ +W LK GG +++
Sbjct: 313 DQQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELAQLQSEIIEAIWPKLKKGGVMVY 372
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSIRLNSPG------QLLPTVNKKQDYDGFFYSLFQKR 137
TCS+ EE+++Q F + H ++ + + Q LP +D DGF+Y+ KR
Sbjct: 373 ATCSILPEENQQQIATFLQRHSEADLVETGTVSALGRQNLP---HPEDGDGFYYAKLIKR 429
>gi|153877898|ref|ZP_02004409.1| Ribosomal RNA small subunit methyltransferase B [Beggiatoa sp. PS]
gi|152065638|gb|EDN65591.1| Ribosomal RNA small subunit methyltransferase B [Beggiatoa sp. PS]
Length = 207
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 75/122 (61%), Gaps = 13/122 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D+PC+GSGV+RR+PDI +LR+ +DI KL++ ++L+ LW +L PGGKLL++TC
Sbjct: 73 FDRILLDVPCSGSGVIRRHPDIKYLRQPSDIAKLAEGQARLLSTLWPLLAPGGKLLYITC 132
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPG----------QLLPTVNKKQDYDGFFYSLFQK 136
S++ EE+ Q F + D+ Q+LP N + DGF +F +
Sbjct: 133 SVFAEENNLQIQQFLATYVDADEFVLTADWGHAQKYGRQILPGEN---NLDGFIMRVFLR 189
Query: 137 RK 138
+K
Sbjct: 190 KK 191
>gi|395233956|ref|ZP_10412190.1| 16S rRNA methyltransferase B [Enterobacter sp. Ag1]
gi|394731578|gb|EJF31337.1| 16S rRNA methyltransferase B [Enterobacter sp. Ag1]
Length = 429
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 48/112 (42%), Positives = 70/112 (62%), Gaps = 9/112 (8%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L+ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAALQKEILDAIWPHLKTGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 132
S+ +E+++Q F H D+ + + PG Q LP + D DGF+Y+
Sbjct: 376 SILPDENKDQVSAFLARHADAKLVETGDNKAPGIQNLPAAD---DGDGFYYA 424
>gi|366161349|ref|ZP_09461211.1| 16S rRNA methyltransferase B [Escherichia sp. TW09308]
gi|432373858|ref|ZP_19616889.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE11]
gi|430893280|gb|ELC15604.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE11]
Length = 429
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 49/120 (40%), Positives = 75/120 (62%), Gaps = 9/120 (7%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
++ FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++
Sbjct: 313 SQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPHLKSGGTLVY 372
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
TCS+ EE+ +Q F + +D++ + PG Q LP ++ DGFFY+ K+
Sbjct: 373 ATCSVLPEENSQQIKAFLQRTEDAMLCETGTPEQPGKQNLPDA---EEGDGFFYAKLIKK 429
>gi|350563944|ref|ZP_08932764.1| sun protein [Thioalkalimicrobium aerophilum AL3]
gi|349778465|gb|EGZ32821.1| sun protein [Thioalkalimicrobium aerophilum AL3]
Length = 433
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 50/129 (38%), Positives = 73/129 (56%), Gaps = 15/129 (11%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FD+IL D PC+ +G++RR+PDI RR DI L +LN LW LKPGG+
Sbjct: 308 WWDGQLFDKILLDAPCSATGIIRRHPDIKVHRRPEDIAALLPIQAGLLNQLWTTLKPGGR 367
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDS--IRLNSPG----------QLLPTVNKKQDYDG 128
LL+ TCS+ +E+ EQ F H D+ I ++ P Q+LP + DG
Sbjct: 368 LLYATCSVLPQENSEQISAFLGAHADAQLIPISLPAGLTSASALGWQILP---GQAGMDG 424
Query: 129 FFYSLFQKR 137
F+Y+L +KR
Sbjct: 425 FYYALLEKR 433
>gi|397163316|ref|ZP_10486781.1| ribosomal RNA small subunit methyltransferase B [Enterobacter
radicincitans DSM 16656]
gi|396095463|gb|EJI93008.1| ribosomal RNA small subunit methyltransferase B [Enterobacter
radicincitans DSM 16656]
Length = 429
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 54/133 (40%), Positives = 79/133 (59%), Gaps = 11/133 (8%)
Query: 13 KKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNN 70
K+ + RF ++ ++ FDRIL D PC+ +GV+RR+PDI WLRR DI +L +IL+
Sbjct: 300 KQGDGRFPSQWCGDEVFDRILVDAPCSATGVIRRHPDIKWLRRDRDIPELVHLQSEILDA 359
Query: 71 LWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS-IRLN----SPG-QLLPTVNKKQ 124
+W LK GG L++ TCS+ EE+ +Q F K D+ + L PG Q LP +
Sbjct: 360 IWPHLKSGGTLVYATCSILPEENSQQVAAFLKRTPDAQLSLTGTPEQPGLQKLPGA---E 416
Query: 125 DYDGFFYSLFQKR 137
+ DGFFY+ K+
Sbjct: 417 EGDGFFYAKIIKQ 429
>gi|152994058|ref|YP_001338893.1| sun protein [Marinomonas sp. MWYL1]
gi|150834982|gb|ABR68958.1| sun protein [Marinomonas sp. MWYL1]
Length = 462
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 54/133 (40%), Positives = 74/133 (55%), Gaps = 20/133 (15%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ ++FD+IL D+PCT +GV+RRNPDI R+ DI L +ILN +W LK GG
Sbjct: 332 WWDGEHFDKILLDVPCTATGVIRRNPDIKINRKPADIDDLVIIQREILNKVWTTLKSGGF 391
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDS--IRLNSPG---------------QLLPTVNKK 123
+L+ TCSL EE+E+Q F N +D+ + LNS QL P N
Sbjct: 392 MLYATCSLMPEENEQQIQHFLANQEDAKEVALNSLAADLAVEWGIPVSHGRQLFPQAN-- 449
Query: 124 QDYDGFFYSLFQK 136
+DGF+Y L QK
Sbjct: 450 -GHDGFYYCLLQK 461
>gi|160872609|ref|ZP_02062741.1| ribosomal RNA small subunit methyltransferase B [Rickettsiella
grylli]
gi|159121408|gb|EDP46746.1| ribosomal RNA small subunit methyltransferase B [Rickettsiella
grylli]
Length = 442
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 80/126 (63%), Gaps = 13/126 (10%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
F+K + FDRIL D PC+G+GV+R++PDI LRR+ D+ +L+ ++L++LW +LKPGG
Sbjct: 311 FWKGRMFDRILLDSPCSGTGVIRKHPDIKLLRREKDVIQLADQQYQLLSSLWGLLKPGGI 370
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDS----IR----LNSP--GQLLPTVNKKQDYDGFF 130
LL+VTCS+ EE+ F +H D+ IR L P Q+LP ++ DGF+
Sbjct: 371 LLYVTCSVLPEENANVLKRFLTHHFDAREEVIRETWGLACPIGRQILPEIHGA---DGFY 427
Query: 131 YSLFQK 136
Y+ +K
Sbjct: 428 YARLRK 433
>gi|113460188|ref|YP_718245.1| ribosomal RNA small subunit methyltransferase B [Haemophilus somnus
129PT]
gi|112822231|gb|ABI24320.1| 16S rRNA m(5)C-967 methyltransferase [Haemophilus somnus 129PT]
Length = 462
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 51/118 (43%), Positives = 70/118 (59%), Gaps = 11/118 (9%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR+++DI L + +IL LWK LKP G L++ TC
Sbjct: 345 FDRILLDAPCSATGVIRRHPDIKWLRQESDITPLVQLQGQILEALWKKLKPQGILVYATC 404
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSP--------GQLLPTVNKKQDYDGFFYSLFQK 136
SL EE+ +Q F H D+ P Q +PT +Q DGF+Y+ +K
Sbjct: 405 SLLPEENSQQIQHFLTKHNDAKLEPLPFTIGEEIGHQFVPT---EQGGDGFYYAKLRK 459
>gi|423126058|ref|ZP_17113737.1| ribosomal RNA small subunit methyltransferase B [Klebsiella oxytoca
10-5250]
gi|376397630|gb|EHT10260.1| ribosomal RNA small subunit methyltransferase B [Klebsiella oxytoca
10-5250]
Length = 455
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 71/117 (60%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 342 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPHLKSGGTLVYATC 401
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PGQL-LPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ +Q F + D++ + PGQ LP + DGFFY+ K+
Sbjct: 402 SVLPEENSQQIKAFLQRTADAVLSETGDADLPGQQNLPGAEQG---DGFFYAKLIKK 455
>gi|322515643|ref|ZP_08068621.1| RNA methyltransferase Sun [Actinobacillus ureae ATCC 25976]
gi|322118294|gb|EFX90577.1| RNA methyltransferase Sun [Actinobacillus ureae ATCC 25976]
Length = 435
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 50/118 (42%), Positives = 72/118 (61%), Gaps = 11/118 (9%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR++ DI L++ KIL+ LW+ LKP G LL+ TC
Sbjct: 319 FDRILLDAPCSATGVIRRHPDIKWLRKEQDIAGLAELQSKILHALWQRLKPNGVLLYATC 378
Query: 87 SLWFEESEEQAIIFSKNHKDS--IRLNSPG------QLLPTVNKKQDYDGFFYSLFQK 136
S+ EE+E+Q F D+ + ++ G Q P +++ DGFFY+ K
Sbjct: 379 SILPEENEQQINRFVAQQTDAKLVEMDFNGKKTAMKQFFP---QEKGGDGFFYAKLVK 433
>gi|223041828|ref|ZP_03612018.1| Trk system potassium uptake protein TrkA [Actinobacillus minor 202]
gi|223017397|gb|EEF15818.1| Trk system potassium uptake protein TrkA [Actinobacillus minor 202]
Length = 432
Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 51/115 (44%), Positives = 69/115 (60%), Gaps = 5/115 (4%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR++ DI +L+ KILN LW LKP G LL+ TC
Sbjct: 317 FDRILLDAPCSATGVIRRHPDIKWLRKEEDIAELAALQSKILNALWARLKPNGILLYATC 376
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKK---QDY--DGFFYSLFQK 136
S+ EE+ +Q F N ++ L + K+ Q+Y DGFFY+ K
Sbjct: 377 SVLPEENSQQIQQFIANTPNAKLLEMDFHGEKVLEKQFFPQNYGGDGFFYAKLMK 431
>gi|387887661|ref|YP_006317959.1| 16S rRNA m5C967 methyltransferase [Escherichia blattae DSM 4481]
gi|414595865|ref|ZP_11445472.1| ribosomal RNA small subunit methyltransferase B [Escherichia
blattae NBRC 105725]
gi|386922494|gb|AFJ45448.1| 16S rRNA m5C967 methyltransferase [Escherichia blattae DSM 4481]
gi|403193153|dbj|GAB83124.1| ribosomal RNA small subunit methyltransferase B [Escherichia
blattae NBRC 105725]
Length = 429
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 47/115 (40%), Positives = 71/115 (61%), Gaps = 9/115 (7%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
++ FDRIL D PC+ +GV+RR+PDI WLRR DI L++ +IL+ +W LK GG L++
Sbjct: 313 DRLFDRILLDAPCSATGVIRRHPDIKWLRRDTDIADLAQLQGEILDAIWPRLKTGGTLVY 372
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 132
TCS+ +E+ +Q F H ++ + + PG Q LP ++ DGFFY+
Sbjct: 373 ATCSVLPDENSQQIAAFLARHPEATLVETGTPEQPGRQNLPAA---EEGDGFFYA 424
>gi|315635055|ref|ZP_07890336.1| RNA methyltransferase Sun [Aggregatibacter segnis ATCC 33393]
gi|315476317|gb|EFU67068.1| RNA methyltransferase Sun [Aggregatibacter segnis ATCC 33393]
Length = 453
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 52/125 (41%), Positives = 72/125 (57%), Gaps = 15/125 (12%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR++ DIK+L +IL+ LW LKP G LL+ TC
Sbjct: 330 FDRILLDAPCSATGVIRRHPDIKWLRKEADIKQLVALQGQILDALWHYLKPNGVLLYATC 389
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDY-------------DGFFYSL 133
S+ EE+ +Q F +N D+ L P L P V ++ DGF+Y+
Sbjct: 390 SVLAEENSQQIERFLQNTPDAQLL--PLDLPPDVLERNQSAVGFQFIPQIDGGDGFYYAK 447
Query: 134 FQKRK 138
KR+
Sbjct: 448 LVKRQ 452
>gi|127514666|ref|YP_001095863.1| sun protein [Shewanella loihica PV-4]
gi|126639961|gb|ABO25604.1| sun protein [Shewanella loihica PV-4]
Length = 427
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 46/122 (37%), Positives = 73/122 (59%), Gaps = 6/122 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+++ FDRIL D PC+ +GV+RR+PDI WLR++ DI++L+ +IL++ W+ LKPGG
Sbjct: 305 WWQGDKFDRILLDAPCSATGVIRRHPDIKWLRKQADIEELATLQSQILDHCWQWLKPGGT 364
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRL------NSPGQLLPTVNKKQDYDGFFYSLF 134
LL+ TCS+ +E+ EQ F +D+ + NS + + DGF+Y+
Sbjct: 365 LLYATCSILPQENAEQIAAFLARTQDATLIPIAQQQNSDDIGWQITPGQDNMDGFYYARL 424
Query: 135 QK 136
K
Sbjct: 425 VK 426
>gi|373467156|ref|ZP_09558457.1| ribosomal RNA small subunit methyltransferase B [Haemophilus sp.
oral taxon 851 str. F0397]
gi|371759115|gb|EHO47861.1| ribosomal RNA small subunit methyltransferase B [Haemophilus sp.
oral taxon 851 str. F0397]
Length = 450
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 52/119 (43%), Positives = 69/119 (57%), Gaps = 12/119 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR++ DI +L + KIL+ LW+ LKP G LL+ TC
Sbjct: 333 FDRILLDAPCSATGVIRRHPDIKWLRKETDIAQLVELQKKILSALWEKLKPNGVLLYATC 392
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSP---------GQLLPTVNKKQDYDGFFYSLFQK 136
S+ EE+ EQ F H D+ L P Q +P N DGF+Y+ K
Sbjct: 393 SVLPEENCEQIQAFLNAHTDAELLPLPFSDDKSAVGFQFIPQPNSG---DGFYYAKLHK 448
>gi|300115538|ref|YP_003762113.1| sun protein [Nitrosococcus watsonii C-113]
gi|299541475|gb|ADJ29792.1| sun protein [Nitrosococcus watsonii C-113]
Length = 435
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 51/118 (43%), Positives = 73/118 (61%), Gaps = 7/118 (5%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+GSGV+RR+PDI LRR++DI L+ ++L+ LW +L PGG LL+ TC
Sbjct: 318 FDRILLDAPCSGSGVIRRHPDIKVLRRESDILPLAVLQKRLLSALWPLLAPGGMLLYCTC 377
Query: 87 SLWFEESEEQAIIFSKNHKDSIR--LNSPGQLLPTVNKK-----QDYDGFFYSLFQKR 137
S+ E+E Q F +H + L P L TV ++ ++ DGF+Y+ +KR
Sbjct: 378 SILPIENERQIHEFLLSHPEGQERPLEVPWGLPQTVGRQLLTGTEELDGFYYACLEKR 435
>gi|152977800|ref|YP_001343429.1| sun protein [Actinobacillus succinogenes 130Z]
gi|150839523|gb|ABR73494.1| sun protein [Actinobacillus succinogenes 130Z]
Length = 462
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 52/118 (44%), Positives = 66/118 (55%), Gaps = 11/118 (9%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ SGV+RR+PDI WLR++ DI L +IL LW LKP G LL+ TC
Sbjct: 345 FDRILLDAPCSASGVIRRHPDIKWLRQEQDIAPLVDIQYQILTALWATLKPNGVLLYATC 404
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSP--------GQLLPTVNKKQDYDGFFYSLFQK 136
S+ EE+ Q F H D+ + P Q LPT N DGF+Y+ +K
Sbjct: 405 SVLPEENGRQIARFLAEHTDAQLMPLPFSPPQEIGHQFLPTENGG---DGFYYAKLRK 459
>gi|350572384|ref|ZP_08940684.1| ribosomal RNA small subunit methyltransferase B [Neisseria
wadsworthii 9715]
gi|349790168|gb|EGZ44087.1| ribosomal RNA small subunit methyltransferase B [Neisseria
wadsworthii 9715]
Length = 420
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 54/117 (46%), Positives = 74/117 (63%), Gaps = 5/117 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+Y + FD ILAD+PCT SGVV+RNPDI WLRR D K ++ +L+ LW +LKPGG+
Sbjct: 309 WYDGQIFDAILADVPCTASGVVKRNPDIKWLRRPTDAFKTARQQETLLDTLWDLLKPGGR 368
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
+L TCS++ EE+ Q F H D+ + LLP N+ DGF+Y+L QK+
Sbjct: 369 MLLATCSIFEEENSSQLQKFLNRHADA-QCKETHVLLPNNNQ----DGFYYALIQKQ 420
>gi|392980964|ref|YP_006479552.1| 16S rRNA methyltransferase B [Enterobacter cloacae subsp.
dissolvens SDM]
gi|392326897|gb|AFM61850.1| 16S rRNA methyltransferase B [Enterobacter cloacae subsp.
dissolvens SDM]
Length = 428
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 49/112 (43%), Positives = 70/112 (62%), Gaps = 9/112 (8%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DIK+L++ +IL+ +W LKP G L++ TC
Sbjct: 315 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIKELAQLQSEILDAIWPHLKPSGTLVYATC 374
Query: 87 SLWFEESEEQAIIFSKNH-----KDSIRLNSPGQL-LPTVNKKQDYDGFFYS 132
S+ EE+ +Q F K +++ PGQ LP ++ DGFFY+
Sbjct: 375 SILPEENSQQISAFLKRTPGATLRETGTPEHPGQQNLPGA---EEGDGFFYA 423
>gi|378957743|ref|YP_005215230.1| sun protein [Salmonella enterica subsp. enterica serovar
Gallinarum/pullorum str. RKS5078]
gi|357208354|gb|AET56400.1| sun protein [Salmonella enterica subsp. enterica serovar
Gallinarum/pullorum str. RKS5078]
Length = 449
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 47/116 (40%), Positives = 70/116 (60%), Gaps = 7/116 (6%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LKP G L++ TC
Sbjct: 336 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPRLKPSGTLVYATC 395
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----RLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ +Q F + D+ + PGQ + ++ DGFFY+ K+
Sbjct: 396 SVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQ--QNLPGGEEGDGFFYAKLIKK 449
>gi|170769473|ref|ZP_02903926.1| ribosomal RNA small subunit methyltransferase B [Escherichia
albertii TW07627]
gi|170121530|gb|EDS90461.1| ribosomal RNA small subunit methyltransferase B [Escherichia
albertii TW07627]
Length = 429
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 73/117 (62%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQSEILDAIWPHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ +Q F + +D++ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SILPEENSQQIKAFLQRTEDAMLCETGTPEQPGKQNLPDA---EEGDGFFYAKLIKK 429
>gi|163803318|ref|ZP_02197196.1| methionyl-tRNA formyltransferase [Vibrio sp. AND4]
gi|159172888|gb|EDP57727.1| methionyl-tRNA formyltransferase [Vibrio sp. AND4]
Length = 427
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 49/122 (40%), Positives = 78/122 (63%), Gaps = 8/122 (6%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+++ + FDRIL D PC+ +GV+RR+PDI WLRR +DI L+ +I + +W LKPGG
Sbjct: 307 WWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAALQSEIFDAMWTQLKPGGT 366
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFYSLFQ 135
+++ TCS+ +E+ EQ F D+ ++S PG Q+LP ++D DGF+Y++
Sbjct: 367 MVYATCSITPQENVEQVKAFLARTADAQLVDSEPHQPGRQILP---GEEDMDGFYYAVLT 423
Query: 136 KR 137
K+
Sbjct: 424 KK 425
>gi|399543078|ref|YP_006556386.1| ribosomal RNA small subunit methyltransferase B [Marinobacter sp.
BSs20148]
gi|399158410|gb|AFP28973.1| Ribosomal RNA small subunit methyltransferase B [Marinobacter sp.
BSs20148]
Length = 432
Score = 96.3 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 45/127 (35%), Positives = 77/127 (60%), Gaps = 13/127 (10%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
+++ + FDRIL D+PC+ SGV+RR+PDI LRR++D+ L++ +L +W++L+PGG
Sbjct: 306 QWWDGQPFDRILLDVPCSASGVIRRHPDIKLLRRESDVVPLAQIQLDLLAAMWRILQPGG 365
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPG----------QLLPTVNKKQDYDGF 129
+L++ TCS++ +E+ F K D+ + + QLLP +DGF
Sbjct: 366 RLVYATCSVFPQENHRIVQRFCKQQTDAELMTTEALWGRTMPAGRQLLPL---NDGHDGF 422
Query: 130 FYSLFQK 136
FY++ +K
Sbjct: 423 FYAVLEK 429
>gi|197249972|ref|YP_002148329.1| 16S rRNA methyltransferase GidB [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|440763490|ref|ZP_20942529.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Agona str. SH11G1113]
gi|440766152|ref|ZP_20945152.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Agona str. SH08SF124]
gi|440772257|ref|ZP_20951163.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Agona str. SH10GFN094]
gi|224493258|sp|B5F7R5.1|RSMB_SALA4 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|197213675|gb|ACH51072.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Agona str. SL483]
gi|436419224|gb|ELP17103.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Agona str. SH10GFN094]
gi|436419715|gb|ELP17589.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Agona str. SH11G1113]
gi|436423659|gb|ELP21466.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Agona str. SH08SF124]
Length = 429
Score = 96.3 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 47/116 (40%), Positives = 70/116 (60%), Gaps = 7/116 (6%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W L PGG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPRLNPGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----RLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ +Q F + D+ + PGQ + ++ DGFFY+ K+
Sbjct: 376 SVLPEENRDQIKAFLQRTPDAALSETGTPDQPGQ--QNLPGGEEGDGFFYAKLIKK 429
>gi|91791391|ref|YP_561042.1| sun protein [Shewanella denitrificans OS217]
gi|91713393|gb|ABE53319.1| sun protein [Shewanella denitrificans OS217]
Length = 428
Score = 96.3 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 48/127 (37%), Positives = 76/127 (59%), Gaps = 12/127 (9%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+++ FDRIL D PC+ +GV+RR+PDI WLR+ +DI +L+ +IL++ W+ LKPGG
Sbjct: 305 WWQGDKFDRILLDAPCSATGVIRRHPDIKWLRKNSDIDELATLQMQILDHCWQWLKPGGT 364
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRL-----NSPG----QLLPTVNKKQDYDGFFY 131
LL+ TCS+ EE+ +Q F D+ + +P Q+LP + + DGF+Y
Sbjct: 365 LLYATCSILPEENSQQINAFLTRTADASLVAISEQKNPADIGWQILP---GQDNMDGFYY 421
Query: 132 SLFQKRK 138
+ K +
Sbjct: 422 ARLVKAR 428
>gi|438140301|ref|ZP_20874903.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Pullorum str. ATCC 9120]
gi|434939888|gb|ELL46624.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Pullorum str. ATCC 9120]
Length = 429
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 47/116 (40%), Positives = 70/116 (60%), Gaps = 7/116 (6%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LKP G L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPRLKPSGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----RLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ +Q F + D+ + PGQ + ++ DGFFY+ K+
Sbjct: 376 SVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQ--QNLPGGEEGDGFFYAKLIKK 429
>gi|406937041|gb|EKD70622.1| hypothetical protein ACD_46C00478G0007 [uncultured bacterium]
Length = 427
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 51/136 (37%), Positives = 79/136 (58%), Gaps = 13/136 (9%)
Query: 11 INKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNN 70
I + N ++ + FDRIL D PC+ SGV+RR+PDI LR+ D+K L+K K+L++
Sbjct: 294 ICRDANEVESWWDGRLFDRILLDAPCSASGVIRRHPDIKLLRQPTDLKNLAKEQAKLLDS 353
Query: 71 LWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS----------IRLNSPGQLLPTV 120
LW +L GG ++VTCS++ EE+ Q F H D+ I + Q+LP +
Sbjct: 354 LWPLLTSGGLFVYVTCSIFPEENILQMQHFIDRHPDALEEKIRADWGIACDIGRQILPGM 413
Query: 121 NKKQDYDGFFYSLFQK 136
+ + DGF+Y+ F+K
Sbjct: 414 H---EMDGFYYACFRK 426
>gi|24371630|ref|NP_715672.1| 16S rRNA (cytosine967-C5)-methyltransferase RsmB [Shewanella
oneidensis MR-1]
gi|46396921|sp|Q8EKR0.1|RSMB_SHEON RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|24345386|gb|AAN53117.1| 16S rRNA (cytosine967-C5)-methyltransferase RsmB [Shewanella
oneidensis MR-1]
Length = 428
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 46/123 (37%), Positives = 78/123 (63%), Gaps = 8/123 (6%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+++ + FDRIL D PC+ +GV+RR+PDI WLR+ +DI++L++ +IL++ WK LKPGG
Sbjct: 304 WWQGEQFDRILLDAPCSATGVIRRHPDIKWLRKNHDIEELAELQRQILDHCWKWLKPGGT 363
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVN-------KKQDYDGFFYSL 133
LL+ TCS+ +E+ +Q F D+ +L++ Q + + + + DGF+Y+
Sbjct: 364 LLYATCSILPQENRDQISAFLARTADA-KLDTLVQQASSQDIGWQITPGQHNMDGFYYAR 422
Query: 134 FQK 136
K
Sbjct: 423 LLK 425
>gi|416893352|ref|ZP_11924540.1| SUN protein [Aggregatibacter aphrophilus ATCC 33389]
gi|347813906|gb|EGY30558.1| SUN protein [Aggregatibacter aphrophilus ATCC 33389]
Length = 259
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 71/123 (57%), Gaps = 11/123 (8%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR++ DI +L +IL+ LW+ LKP G LL+ TC
Sbjct: 136 FDRILLDAPCSATGVIRRHPDIKWLRKETDIDQLVALQEQILHGLWQYLKPNGVLLYATC 195
Query: 87 SLWFEESEEQAIIFSKNHKDS--IRLNSPGQLLPT---------VNKKQDYDGFFYSLFQ 135
S+ EE+ Q F + D+ + L P ++L + + DGF+Y+
Sbjct: 196 SVLAEENSRQISRFLQQTPDAELVELVLPAEVLAQNQSAVGFQFIPQADGGDGFYYAKLV 255
Query: 136 KRK 138
KR+
Sbjct: 256 KRQ 258
>gi|89074758|ref|ZP_01161216.1| Putative Sun protein [Photobacterium sp. SKA34]
gi|89049522|gb|EAR55083.1| Putative Sun protein [Photobacterium sp. SKA34]
Length = 426
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 47/122 (38%), Positives = 73/122 (59%), Gaps = 8/122 (6%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
++++ FDRIL D PC+ +GV+RR+PDI WLRR DI L+ +I + +W LKPGG
Sbjct: 306 QWWQGDKFDRILLDAPCSATGVIRRHPDIKWLRRGEDIAALATLQAEIFDAMWLQLKPGG 365
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFYSLF 134
L++ TCS+ +E+ +Q F + + S PG Q+LP ++ DGF+Y++
Sbjct: 366 TLVYATCSITPQENCDQVKAFLARTPNVTLIGSDPAKPGRQILP---GEESMDGFYYAVL 422
Query: 135 QK 136
K
Sbjct: 423 TK 424
>gi|423116640|ref|ZP_17104331.1| ribosomal RNA small subunit methyltransferase B [Klebsiella oxytoca
10-5245]
gi|376377608|gb|EHS90376.1| ribosomal RNA small subunit methyltransferase B [Klebsiella oxytoca
10-5245]
Length = 429
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 47/114 (41%), Positives = 70/114 (61%), Gaps = 3/114 (2%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ SGV+RR+PDI WLRR DI++L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSASGVIRRHPDIKWLRRDRDIEELAQLQSEILDAVWPHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPGQLLP---TVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D++ + LP + ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAVLSETGTPELPGQQNLPGGEEGDGFFYAKLIKK 429
>gi|126668178|ref|ZP_01739139.1| Fmu, rRNA SAM-dependent methyltransferase [Marinobacter sp. ELB17]
gi|126627327|gb|EAZ97963.1| Fmu, rRNA SAM-dependent methyltransferase [Marinobacter sp. ELB17]
Length = 432
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 47/127 (37%), Positives = 76/127 (59%), Gaps = 13/127 (10%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
+++ + FDRIL DLPC+ SGV+RR+PDI LRR++D+ L++ +L +W++L+PGG
Sbjct: 306 QWWDGQPFDRILLDLPCSASGVIRRHPDIKLLRRESDVVPLAQIQLGLLVAMWRILQPGG 365
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPG----------QLLPTVNKKQDYDGF 129
+L++ TCS++ +E+ F K DS + QLLP +DGF
Sbjct: 366 RLVYATCSVFPQENHRIVQRFCKQQTDSELITIEALWGRTMPAGRQLLPL---NDGHDGF 422
Query: 130 FYSLFQK 136
FY++ +K
Sbjct: 423 FYAVLEK 429
>gi|114561210|ref|YP_748723.1| sun protein [Shewanella frigidimarina NCIMB 400]
gi|114332503|gb|ABI69885.1| sun protein [Shewanella frigidimarina NCIMB 400]
Length = 427
Score = 95.9 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 47/125 (37%), Positives = 77/125 (61%), Gaps = 12/125 (9%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+++ + FDRIL D PC+ +GV+RR+PDI WLR+ +DI++L+ +IL++ W+ LKPGG
Sbjct: 304 WWQGQQFDRILLDAPCSATGVIRRHPDIKWLRKNSDIEELANLQKQILDHCWQWLKPGGT 363
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDS--------IRLNSPG-QLLPTVNKKQDYDGFFY 131
LL+ TCS+ +E+ +Q F D+ ++ G Q+LP + + DGF+Y
Sbjct: 364 LLYATCSILPQENSQQVEQFLARTADASLVPIEQQAHISDIGWQILP---GQDNMDGFYY 420
Query: 132 SLFQK 136
+ K
Sbjct: 421 ARLVK 425
>gi|419838520|ref|ZP_14361945.1| ribosomal RNA small subunit methyltransferase B [Haemophilus
haemolyticus HK386]
gi|386910285|gb|EIJ74942.1| ribosomal RNA small subunit methyltransferase B [Haemophilus
haemolyticus HK386]
Length = 450
Score = 95.9 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 52/119 (43%), Positives = 70/119 (58%), Gaps = 12/119 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR++ DI +L + KIL+ LW+ LKP G LL+ TC
Sbjct: 333 FDRILLDAPCSATGVIRRHPDIKWLRKETDIAQLVELQKKILSALWEKLKPNGVLLYATC 392
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSP---------GQLLPTVNKKQDYDGFFYSLFQK 136
S+ EE+ EQ F H D+ L P Q +P N DGF+Y+ +K
Sbjct: 393 SVLPEENCEQIQAFLNAHADAELLLLPFSDDKSAVGFQFIPQPNGG---DGFYYAKLRK 448
>gi|403060219|ref|YP_006648436.1| sun protein [Pectobacterium carotovorum subsp. carotovorum PCC21]
gi|402807545|gb|AFR05183.1| sun protein [Pectobacterium carotovorum subsp. carotovorum PCC21]
Length = 429
Score = 95.9 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 48/120 (40%), Positives = 71/120 (59%), Gaps = 9/120 (7%)
Query: 23 KNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLL 82
+ + FDRIL D PC+ +GV+RR+PDI WLRR DI++L +IL+ +W LK GG ++
Sbjct: 312 EGRVFDRILLDAPCSATGVIRRHPDIKWLRRDRDIEELVALQKEILDAIWPHLKTGGTMV 371
Query: 83 FVTCSLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQK 136
+ TCS+ +E+ +Q F H D+ + PG Q+LP + DGFFY+ K
Sbjct: 372 YATCSILPQENTQQVADFLTRHTDATLAGTGTREIPGIQMLPYADGG---DGFFYAKLVK 428
>gi|423110642|ref|ZP_17098337.1| ribosomal RNA small subunit methyltransferase B [Klebsiella oxytoca
10-5243]
gi|376378706|gb|EHS91464.1| ribosomal RNA small subunit methyltransferase B [Klebsiella oxytoca
10-5243]
Length = 429
Score = 95.9 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 50/117 (42%), Positives = 71/117 (60%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ SGV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSASGVIRRHPDIKWLRRDRDIAELAQLQSEILDAVWPHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PGQL-LPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D++ + PGQ LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAVLSETGTPEVPGQQNLPGA---EEGDGFFYAKLIKK 429
>gi|317494309|ref|ZP_07952723.1| ribosomal RNA small subunit methyltransferase B [Enterobacteriaceae
bacterium 9_2_54FAA]
gi|316917559|gb|EFV38904.1| ribosomal RNA small subunit methyltransferase B [Enterobacteriaceae
bacterium 9_2_54FAA]
Length = 430
Score = 95.9 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 49/115 (42%), Positives = 70/115 (60%), Gaps = 9/115 (7%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
+K FDRIL D PC+ +GV+RR+PDI WLRR DI +L+ +I+ +W LK GG +++
Sbjct: 314 DKQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAALQKEIIEAIWPHLKSGGVMVY 373
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSIRL-----NSPGQL-LPTVNKKQDYDGFFYS 132
TCS+ EE+ +Q F H ++ + +PGQ LP QD DGFFY+
Sbjct: 374 ATCSVLPEENAQQMREFLSRHPEAQLMITGDQKNPGQQHLP---HAQDGDGFFYA 425
>gi|378580947|ref|ZP_09829599.1| 16S rRNA m5C967 methyltransferase [Pantoea stewartii subsp.
stewartii DC283]
gi|377816426|gb|EHT99529.1| 16S rRNA m5C967 methyltransferase [Pantoea stewartii subsp.
stewartii DC283]
Length = 432
Score = 95.9 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 47/114 (41%), Positives = 67/114 (58%), Gaps = 9/114 (7%)
Query: 25 KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 84
+ FDRIL D PC+ +GV+RR+PDI WLRR DI +L+ IL W +LK GG +++
Sbjct: 314 RQFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAALQRDILEATWPLLKAGGTMIYA 373
Query: 85 TCSLWFEESEEQAIIFSKNHKDSIRLNSPG------QLLPTVNKKQDYDGFFYS 132
TCS+ EE+ EQ F + H D+ ++ G Q+ P + DGFFY+
Sbjct: 374 TCSVLPEENHEQISGFLQRHADAQAVSLSGAPETGWQVFPDA---EGGDGFFYA 424
>gi|253690152|ref|YP_003019342.1| sun protein [Pectobacterium carotovorum subsp. carotovorum PC1]
gi|259495486|sp|C6DFR7.1|RSMB_PECCP RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|251756730|gb|ACT14806.1| sun protein [Pectobacterium carotovorum subsp. carotovorum PC1]
Length = 429
Score = 95.9 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 47/120 (39%), Positives = 72/120 (60%), Gaps = 9/120 (7%)
Query: 23 KNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLL 82
+ + FDRIL D PC+ +GV+RR+PDI WLRR DI++L +I + +W LK GG ++
Sbjct: 312 EGRMFDRILLDAPCSATGVIRRHPDIKWLRRDRDIEELVALQKEIFDAIWPHLKVGGTMV 371
Query: 83 FVTCSLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQK 136
+ TCS+ +E+ +Q F H D+ +++ PG Q+LP + DGFFY+ K
Sbjct: 372 YATCSILPQENAQQVTDFLTRHADATLVDTGTRELPGIQMLPHADGG---DGFFYAKLVK 428
>gi|334144602|ref|YP_004537758.1| sun protein [Thioalkalimicrobium cyclicum ALM1]
gi|333965513|gb|AEG32279.1| sun protein [Thioalkalimicrobium cyclicum ALM1]
Length = 433
Score = 95.9 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 50/129 (38%), Positives = 70/129 (54%), Gaps = 15/129 (11%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ K FDRIL D PC+ +G++RR+PDI RR DI L +L+ LW LKPGG
Sbjct: 308 WWDGKLFDRILLDAPCSATGIIRRHPDIKLHRRPEDIAALQPIQAGLLHQLWSTLKPGGH 367
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDS--IRLNSP----------GQLLPTVNKKQDYDG 128
LL+ TCS+ +E+ EQ F H D+ + + P Q+LP + DG
Sbjct: 368 LLYATCSVLPQENSEQISAFLAAHPDAQLVPITPPMALTSATQVGWQILP---GQAGMDG 424
Query: 129 FFYSLFQKR 137
F+Y+L KR
Sbjct: 425 FYYALLAKR 433
>gi|422337239|ref|ZP_16418211.1| ribosomal RNA small subunit methyltransferase B [Aggregatibacter
aphrophilus F0387]
gi|353345791|gb|EHB90082.1| ribosomal RNA small subunit methyltransferase B [Aggregatibacter
aphrophilus F0387]
Length = 451
Score = 95.9 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 48/123 (39%), Positives = 71/123 (57%), Gaps = 11/123 (8%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR++ DI +L +IL+ LW+ LKP G LL+ TC
Sbjct: 328 FDRILLDAPCSATGVIRRHPDIKWLRKETDIDQLVALQEQILHGLWQYLKPNGVLLYATC 387
Query: 87 SLWFEESEEQAIIFSKNHKDS--IRLNSPGQLLPT---------VNKKQDYDGFFYSLFQ 135
S+ EE+ Q F + D+ + L P ++L + + DGF+Y+
Sbjct: 388 SVLAEENSRQISRFLQQTADAELVELALPAEVLAQNQSAVGFQFIPQADGGDGFYYAKLV 447
Query: 136 KRK 138
KR+
Sbjct: 448 KRQ 450
>gi|303256329|ref|ZP_07342345.1| ribosomal RNA small subunit methyltransferase B [Burkholderiales
bacterium 1_1_47]
gi|330999024|ref|ZP_08322749.1| ribosomal RNA small subunit methyltransferase B [Parasutterella
excrementihominis YIT 11859]
gi|302861058|gb|EFL84133.1| ribosomal RNA small subunit methyltransferase B [Burkholderiales
bacterium 1_1_47]
gi|329575766|gb|EGG57292.1| ribosomal RNA small subunit methyltransferase B [Parasutterella
excrementihominis YIT 11859]
Length = 434
Score = 95.9 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 46/130 (35%), Positives = 74/130 (56%), Gaps = 13/130 (10%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
+++ + F+RIL D PCT SG+VRR+PDIPW R+ DI KL++ K+L +W +L G
Sbjct: 304 KWWDGRPFERILLDAPCTASGIVRRHPDIPWSRKPEDIAKLARTQGKLLETMWPLLANNG 363
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDS--IRLNSPGQLLPTVNKKQ-----------DY 126
++L+ CS++ EE F H D+ I + G+ L +++ + +
Sbjct: 364 RILYAVCSVFPEEGPRGIEAFCARHPDAKLIPIGPEGENLLSLSPAEGPETPGSVWPATH 423
Query: 127 DGFFYSLFQK 136
DGFFY+L +K
Sbjct: 424 DGFFYALLEK 433
>gi|254282952|ref|ZP_04957920.1| ribosomal RNA small subunit methyltransferase B [gamma
proteobacterium NOR51-B]
gi|219679155|gb|EED35504.1| ribosomal RNA small subunit methyltransferase B [gamma
proteobacterium NOR51-B]
Length = 416
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 83/163 (50%), Gaps = 30/163 (18%)
Query: 1 MIAGEIESSDINKKTNNRFRF-----------------YKNKYFDRILADLPCTGSGVVR 43
+IA +I++ + K NR R FD I+AD+PC+ +GV+R
Sbjct: 255 LIAADIDAKRLEKVIANRDRLGLGFDCIAMDAAHPGDELGVGRFDAIVADVPCSATGVLR 314
Query: 44 RNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKN 103
RNPDI R K DI+ ++ I + LW +LKPGG+LL+VTCS+ E++ Q F ++
Sbjct: 315 RNPDIKIHRGKTDIRHFAQQQTDITHGLWPLLKPGGRLLYVTCSILRAENDAQVEAFLEH 374
Query: 104 HKDS----------IRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
H+D+ I Q+LP + DG ++SL ++
Sbjct: 375 HEDAAVEPFDTEVGIATEYGQQVLPAA---EGGDGLYFSLIRR 414
>gi|422017025|ref|ZP_16363598.1| 16S rRNA methyltransferase B [Providencia burhodogranariea DSM
19968]
gi|414091194|gb|EKT52885.1| 16S rRNA methyltransferase B [Providencia burhodogranariea DSM
19968]
Length = 428
Score = 95.5 bits (236), Expect = 6e-18, Method: Composition-based stats.
Identities = 45/106 (42%), Positives = 65/106 (61%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR +DI +L++ +IL ++W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDSDINELTELQSQILESVWPYLKIGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYS 132
S+ EE+ Q F H D++ + L + DGFFY+
Sbjct: 376 SVMPEENSLQIQKFLAKHSDAVLNDGTTAGLQILPNTTGGDGFFYA 421
>gi|410634870|ref|ZP_11345497.1| ribosomal RNA small subunit methyltransferase B [Glaciecola
lipolytica E3]
gi|410145614|dbj|GAC12702.1| ribosomal RNA small subunit methyltransferase B [Glaciecola
lipolytica E3]
Length = 442
Score = 95.5 bits (236), Expect = 6e-18, Method: Composition-based stats.
Identities = 50/119 (42%), Positives = 73/119 (61%), Gaps = 12/119 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR+ DI L +IL+ +W++LKPGG LL+ TC
Sbjct: 326 FDRILLDAPCSATGVIRRHPDIKWLRKNADIDTLVTLQRQILDTMWRILKPGGTLLYATC 385
Query: 87 SLWFEESEEQAIIFSKNHKDSIRL--------NSPG-QLLPTVNKKQDYDGFFYSLFQK 136
S+ EE+ Q F +N+ D+ + +PG Q+LP ++ DGF+Y+ K
Sbjct: 386 SILPEENYLQINAFLQNNPDASLIPVCNETENANPGRQILP---GEKQMDGFYYARLLK 441
>gi|119943873|ref|YP_941553.1| sun protein [Psychromonas ingrahamii 37]
gi|119862477|gb|ABM01954.1| 16S rRNA m(5)C-967 methyltransferase [Psychromonas ingrahamii 37]
Length = 436
Score = 95.5 bits (236), Expect = 6e-18, Method: Composition-based stats.
Identities = 52/145 (35%), Positives = 82/145 (56%), Gaps = 16/145 (11%)
Query: 5 EIESSDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYS 64
++++S I+ + ++ + FDRIL D PC+ +GV+RR+PDI WLRR++DI L
Sbjct: 293 KLKASVIHGDASQPGSWWHGELFDRILCDAPCSATGVIRRHPDIRWLRRESDIAGLVSLQ 352
Query: 65 CKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL-------------N 111
IL+ LW LKPGG LL+ TCS+ +E++ Q F ++ +D+ + N
Sbjct: 353 KNILHALWDKLKPGGILLYATCSILPDENDLQIQDFLESRQDASLIPLIVQDNLQNNIQN 412
Query: 112 SPGQLLPTVNKKQDYDGFFYSLFQK 136
Q+LP + DGF+Y+ QK
Sbjct: 413 KGRQILPN---EDAMDGFYYAKLQK 434
>gi|78484536|ref|YP_390461.1| sun protein [Thiomicrospira crunogena XCL-2]
gi|78362822|gb|ABB40787.1| Ribosomal RNA small subunit methyltransferase B [Thiomicrospira
crunogena XCL-2]
Length = 436
Score = 95.5 bits (236), Expect = 7e-18, Method: Composition-based stats.
Identities = 52/146 (35%), Positives = 81/146 (55%), Gaps = 18/146 (12%)
Query: 2 IAGEIESSDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLS 61
+ EIE D ++ +++ FD+IL D PC+ +G++RR+PDI W R DI L+
Sbjct: 296 LTAEIEVGDASQPD----QWWPEIQFDKILLDAPCSATGIIRRHPDIKWHRTPEDITVLT 351
Query: 62 KYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS----------IRLN 111
+ IL +W LKPGGKLL+ TCS+ +E+ +Q F + D+ I ++
Sbjct: 352 QLQAAILQAIWPRLKPGGKLLYATCSVLPQENRDQISQFLQQTPDAKEIPIGADWGITID 411
Query: 112 SPG-QLLPTVNKKQDYDGFFYSLFQK 136
+PG Q+LP + DGF+Y L +K
Sbjct: 412 APGRQILP---GQDGMDGFYYCLIEK 434
>gi|449472095|ref|XP_004153495.1| PREDICTED: ribosomal RNA small subunit methyltransferase B-like,
partial [Cucumis sativus]
Length = 211
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 58/82 (70%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DIK+L++ +IL+ +W LKPGG L++ TC
Sbjct: 120 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIKELAQLQSEILDAIWPHLKPGGTLVYATC 179
Query: 87 SLWFEESEEQAIIFSKNHKDSI 108
S+ EE+ +Q F K D++
Sbjct: 180 SVLPEENSKQIAAFLKRTPDAM 201
>gi|350553951|ref|ZP_08923101.1| sun protein [Thiorhodospira sibirica ATCC 700588]
gi|349789327|gb|EGZ43288.1| sun protein [Thiorhodospira sibirica ATCC 700588]
Length = 436
Score = 95.1 bits (235), Expect = 7e-18, Method: Composition-based stats.
Identities = 48/125 (38%), Positives = 71/125 (56%), Gaps = 7/125 (5%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + F+RIL D+PC+ +GV+RR+PDI WLRR +DI+ L+ +L +W +L P G
Sbjct: 308 WWSGEVFERILLDVPCSATGVMRRHPDIKWLRRASDIEALATTQQNLLEAVWPLLAPNGV 367
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRL---NSPGQLLP----TVNKKQDYDGFFYSL 133
LL+ TCSL +E+E F H D+ L G LP + Q DGF+Y+
Sbjct: 368 LLYATCSLLEQENEANLAAFVARHADAQVLPITADWGIALPLGRQILTGDQGMDGFYYAR 427
Query: 134 FQKRK 138
QK +
Sbjct: 428 LQKAR 432
>gi|387769752|ref|ZP_10125952.1| ribosomal RNA small subunit methyltransferase B [Pasteurella
bettyae CCUG 2042]
gi|386906141|gb|EIJ70885.1| ribosomal RNA small subunit methyltransferase B [Pasteurella
bettyae CCUG 2042]
Length = 475
Score = 95.1 bits (235), Expect = 8e-18, Method: Composition-based stats.
Identities = 51/120 (42%), Positives = 69/120 (57%), Gaps = 12/120 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR++ DI+ L K KIL LWK LKP G LL+ TC
Sbjct: 356 FDRILLDAPCSATGVIRRHPDIKWLRQEQDIESLVKLQEKILEALWKKLKPNGILLYATC 415
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSP---------GQLLPTVNKKQDYDGFFYSLFQKR 137
SL EE+ +Q F ++ P Q P+ +Q DGF+Y+ +K+
Sbjct: 416 SLLPEENSQQITAFLAKTPNAQLEQLPFEQAEGEIGKQFFPS---EQGGDGFYYAKLKKK 472
>gi|365922492|ref|ZP_09446691.1| ribosomal RNA small subunit methyltransferase B [Cardiobacterium
valvarum F0432]
gi|364573090|gb|EHM50607.1| ribosomal RNA small subunit methyltransferase B [Cardiobacterium
valvarum F0432]
Length = 419
Score = 95.1 bits (235), Expect = 8e-18, Method: Composition-based stats.
Identities = 53/120 (44%), Positives = 68/120 (56%), Gaps = 14/120 (11%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FD IL D PC+GSGV+RR+PDI WLR D+ +L +LN LW LKPGG+LL+ TC
Sbjct: 302 FDAILLDAPCSGSGVLRRHPDIAWLRTVADLHRLPGQQRHLLNRLWPTLKPGGRLLYTTC 361
Query: 87 SLWFEESEEQAIIFSKNHKDSI--RLNSP-------GQL-LPTVNKKQDYDGFFYSLFQK 136
S+ E+++ F H D+ LN P G L LP D DGF+Y+L K
Sbjct: 362 SILPAENQDNIRAFLATHPDAYLQPLNLPACRDTGYGSLHLPDT----DGDGFYYALLYK 417
>gi|339061847|ref|ZP_08649047.1| Ribosomal RNA small subunit methyltransferase B [gamma
proteobacterium IMCC2047]
gi|330720125|gb|EGG98529.1| Ribosomal RNA small subunit methyltransferase B [gamma
proteobacterium IMCC2047]
Length = 436
Score = 95.1 bits (235), Expect = 8e-18, Method: Composition-based stats.
Identities = 52/128 (40%), Positives = 76/128 (59%), Gaps = 13/128 (10%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
+++ + +DRIL D PC+ +GV+RR+PDI LRR +DI +L+K +IL LW +LKP G
Sbjct: 311 KWWDQQPYDRILLDAPCSATGVIRRHPDIKLLRRDDDITELAKLQLQILQALWPLLKPHG 370
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRL------NSPG----QLLPTVNKKQDYDGF 129
LL+ TCS+ EE+E+ F K + L PG QL P + Q +DGF
Sbjct: 371 ILLYATCSVLPEENEQVISTFLKQQCQAKILPFEADWGIPGAVGRQLFP---QPQGHDGF 427
Query: 130 FYSLFQKR 137
+Y+ QK+
Sbjct: 428 YYARIQKQ 435
>gi|258545467|ref|ZP_05705701.1| ribosomal RNA small subunit methyltransferase B [Cardiobacterium
hominis ATCC 15826]
gi|258519300|gb|EEV88159.1| ribosomal RNA small subunit methyltransferase B [Cardiobacterium
hominis ATCC 15826]
Length = 418
Score = 95.1 bits (235), Expect = 8e-18, Method: Composition-based stats.
Identities = 49/119 (41%), Positives = 69/119 (57%), Gaps = 10/119 (8%)
Query: 25 KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 84
K FD IL D PC+GSGV+RR+PDI WLR D+K+L+ ++L LW LKPGG+LL+
Sbjct: 300 KPFDAILLDAPCSGSGVLRRHPDIAWLRTPADLKRLAASQRQLLERLWPTLKPGGRLLYT 359
Query: 85 TCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVN-------KKQDYDGFFYSLFQK 136
TC++ E+++ F H D+ RL + LP D DGF+Y++ K
Sbjct: 360 TCTILPAENQDNIRAFLAAHPDA-RLQTLA--LPADTGYGSLHLPDDDGDGFYYAMLHK 415
>gi|240947872|ref|ZP_04752312.1| ribosomal RNA small subunit methyltransferase B [Actinobacillus
minor NM305]
gi|240297834|gb|EER48270.1| ribosomal RNA small subunit methyltransferase B [Actinobacillus
minor NM305]
Length = 444
Score = 95.1 bits (235), Expect = 9e-18, Method: Composition-based stats.
Identities = 51/118 (43%), Positives = 69/118 (58%), Gaps = 11/118 (9%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR++ DI +L+ KILN LW LKP G LL+ TC
Sbjct: 325 FDRILLDAPCSATGVIRRHPDIKWLRKEEDIAELAALQSKILNALWARLKPNGILLYATC 384
Query: 87 SLWFEESEEQAIIFSKNHKDS--IRLNSPG------QLLPTVNKKQDYDGFFYSLFQK 136
S+ EE+ EQ F N ++ + ++ G Q P + DGFFY+ K
Sbjct: 385 SILPEENTEQIQQFIANTPNAKLVEMDFHGEKMLEKQFFP---QNHGGDGFFYAKLLK 439
>gi|365834673|ref|ZP_09376116.1| ribosomal RNA small subunit methyltransferase B [Hafnia alvei ATCC
51873]
gi|364568786|gb|EHM46424.1| ribosomal RNA small subunit methyltransferase B [Hafnia alvei ATCC
51873]
Length = 430
Score = 95.1 bits (235), Expect = 9e-18, Method: Composition-based stats.
Identities = 48/115 (41%), Positives = 70/115 (60%), Gaps = 9/115 (7%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
++ FDRIL D PC+ +GV+RR+PDI WLRR DI +L+ +I+ +W LK GG +++
Sbjct: 314 DRQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAALQKEIIEAIWPHLKSGGVMVY 373
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSIRLNS-----PGQL-LPTVNKKQDYDGFFYS 132
TCS+ EE+ +Q F H ++ + + PGQ LP QD DGFFY+
Sbjct: 374 ATCSVLPEENAQQMREFLARHPEAQLVTTGDQENPGQQHLP---HAQDGDGFFYA 425
>gi|410620541|ref|ZP_11331409.1| ribosomal RNA small subunit methyltransferase B [Glaciecola polaris
LMG 21857]
gi|410159901|dbj|GAC35547.1| ribosomal RNA small subunit methyltransferase B [Glaciecola polaris
LMG 21857]
Length = 437
Score = 94.7 bits (234), Expect = 9e-18, Method: Composition-based stats.
Identities = 56/161 (34%), Positives = 85/161 (52%), Gaps = 29/161 (18%)
Query: 2 IAGEIESSDINKKTNNRFR-----------------FYKNKYFDRILADLPCTGSGVVRR 44
IA +IESS + + N R ++ + FDRIL D PC+ +G++RR
Sbjct: 279 IALDIESSRLARIEENLTRLGHKAELICGDASEPSAWWDGQQFDRILLDAPCSATGIIRR 338
Query: 45 NPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH 104
+PDI WLR+ +DI L KI++ +W +LKPGG +L+ TCS+ EE++ Q F
Sbjct: 339 HPDIKWLRKSSDIDTLVALQAKIIDAMWLLLKPGGTMLYATCSILPEENQLQINAFLSRT 398
Query: 105 KDSIRLNS--------PG-QLLPTVNKKQDYDGFFYSLFQK 136
D+ +S PG Q+LP ++ DGF+Y+ K
Sbjct: 399 ADASVDSSFANDASDKPGRQVLP---GQKQMDGFYYARLLK 436
>gi|167855267|ref|ZP_02478036.1| tryptophanyl-tRNA synthetase [Haemophilus parasuis 29755]
gi|167853631|gb|EDS24876.1| tryptophanyl-tRNA synthetase [Haemophilus parasuis 29755]
Length = 432
Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 50/116 (43%), Positives = 72/116 (62%), Gaps = 5/116 (4%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FD+IL D PC+ +GV+RR+PDI WLR++ DI +L++ KIL LW LKP G LL+ TC
Sbjct: 316 FDKILLDAPCSATGVIRRHPDIKWLRKEEDIAELAELQGKILKALWARLKPNGVLLYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDS--IRLNSPGQ--LLPTVNKKQD-YDGFFYSLFQKR 137
S+ EE+ +Q F ++ + +N G+ L+ KQD DGFFY+ K+
Sbjct: 376 SVLPEENSQQIQHFLAQTPEAKLVEINVGGEQCLMKQFFPKQDGGDGFFYAKLVKQ 431
>gi|410647445|ref|ZP_11357877.1| ribosomal RNA small subunit methyltransferase B [Glaciecola
agarilytica NO2]
gi|410133035|dbj|GAC06276.1| ribosomal RNA small subunit methyltransferase B [Glaciecola
agarilytica NO2]
Length = 437
Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 46/125 (36%), Positives = 75/125 (60%), Gaps = 12/125 (9%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRIL D PC+ +G++RR+PDI WLR+ +DI L KI++ +W +LKPGG
Sbjct: 315 WWNGEQFDRILLDAPCSATGIIRRHPDIKWLRKSSDIDTLVALQAKIIDAIWPLLKPGGT 374
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSI--------RLNSPG-QLLPTVNKKQDYDGFFY 131
+L+ TCS+ E++ Q F + D+ ++ PG Q+LP +++ DGF+Y
Sbjct: 375 MLYATCSILPAENQLQISAFLERTTDAALDPEFNNDAIDKPGRQILP---GEKNMDGFYY 431
Query: 132 SLFQK 136
+ K
Sbjct: 432 ARLLK 436
>gi|410620665|ref|ZP_11331525.1| ribosomal RNA small subunit methyltransferase B [Glaciecola
pallidula DSM 14239 = ACAM 615]
gi|410159772|dbj|GAC26899.1| ribosomal RNA small subunit methyltransferase B [Glaciecola
pallidula DSM 14239 = ACAM 615]
Length = 447
Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 50/126 (39%), Positives = 70/126 (55%), Gaps = 12/126 (9%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
R K+K +DRIL D PC+ +GV+RR+PDI WLR+ DI +IL +W+ +KPGG
Sbjct: 323 RVLKDKKYDRILLDAPCSATGVIRRHPDIRWLRKATDIDNTVALQKRILAQVWQRVKPGG 382
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRL--------NSPG-QLLPTVNKKQDYDGFF 130
LL+ TCS+ +E+E Q F D+ L PG Q+LP + DGF+
Sbjct: 383 VLLYATCSILKQENEYQIAEFLTTQSDARLLPIHEKDTAQCPGLQILP---GQAQMDGFY 439
Query: 131 YSLFQK 136
Y+ K
Sbjct: 440 YARLLK 445
>gi|149375620|ref|ZP_01893389.1| Fmu, rRNA SAM-dependent methyltransferase [Marinobacter algicola
DG893]
gi|149360022|gb|EDM48477.1| Fmu, rRNA SAM-dependent methyltransferase [Marinobacter algicola
DG893]
Length = 433
Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 47/128 (36%), Positives = 78/128 (60%), Gaps = 15/128 (11%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
+++ K FDRIL D+PC+ +GV+RR+PDI LRR++DI L+ +L ++W++L PGG
Sbjct: 307 QWWDRKPFDRILLDVPCSATGVIRRHPDIKLLRRESDIVPLASIQLGLLESMWQVLAPGG 366
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPG-----------QLLPTVNKKQDYDG 128
+L++ TCS++ +E+ F K +D+ L P Q+LP + +DG
Sbjct: 367 RLVYATCSVFPQENHRIIRRFLK-QQDNAALVEPDVLWGRDMETGRQMLPV---PESHDG 422
Query: 129 FFYSLFQK 136
FFY++ +K
Sbjct: 423 FFYAVLEK 430
>gi|118602253|ref|YP_903468.1| sun protein [Candidatus Ruthia magnifica str. Cm (Calyptogena
magnifica)]
gi|118567192|gb|ABL01997.1| 16S rRNA m(5)C-967 methyltransferase [Candidatus Ruthia magnifica
str. Cm (Calyptogena magnifica)]
Length = 421
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 73/118 (61%), Gaps = 6/118 (5%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ ++ FD+IL D PC+ +GV+RR+PDI LR+ DI L IL NLW+MLKP G
Sbjct: 298 WWDSQLFDKILFDAPCSATGVIRRHPDIKLLRKPKDITTLVVLQKNILENLWQMLKPSGI 357
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDS--IRLNSPGQLLPTVNKKQ----DYDGFFYS 132
LL+ TCS+ E+E+Q F H D+ I++ + TV ++Q ++DGF+Y+
Sbjct: 358 LLYATCSILKVENEQQIKYFLNTHYDAKEIKIELDWGINTTVGRQQLPTDNFDGFYYA 415
>gi|220933384|ref|YP_002512283.1| sun protein [Thioalkalivibrio sulfidophilus HL-EbGr7]
gi|219994694|gb|ACL71296.1| sun protein [Thioalkalivibrio sulfidophilus HL-EbGr7]
Length = 432
Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 47/127 (37%), Positives = 74/127 (58%), Gaps = 11/127 (8%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
++++ +DRIL D PC+ +GV+RR+PDI LR+ DI +L+ +L LW +L PGG
Sbjct: 307 QWHEGGAYDRILLDAPCSATGVIRRHPDIKLLRKGEDIPRLAARQAALLEALWPLLAPGG 366
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSI---------RLNSPGQLLPTVNKKQDYDGFF 130
LL+ TCSL E+ +Q +F + H D+ R SPG+ + + +Q DGF+
Sbjct: 367 MLLYATCSLLPRENADQVRVFLQAHGDAEESPLPEDFGRSTSPGRQI--LAGEQGMDGFY 424
Query: 131 YSLFQKR 137
Y+ K+
Sbjct: 425 YARLIKQ 431
>gi|260914692|ref|ZP_05921158.1| RNA methyltransferase Sun [Pasteurella dagmatis ATCC 43325]
gi|260631291|gb|EEX49476.1| RNA methyltransferase Sun [Pasteurella dagmatis ATCC 43325]
Length = 443
Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 12/119 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR+ DI +L + +IL LW +LKP G LL+ TC
Sbjct: 326 FDRILLDAPCSATGVIRRHPDIKWLRQDADIPQLVQLQSQILQALWALLKPSGTLLYATC 385
Query: 87 SLWFEESEEQAIIFSKNHKDS----IRLNSPG-----QLLPTVNKKQDYDGFFYSLFQK 136
S+ EE+ Q F +N+ D+ + + P Q LP K+ DGF+Y+ +K
Sbjct: 386 SVLPEENALQIEQFLQNNTDAKLEPLPFDLPDSAIGVQFLP---KENGGDGFYYAKLKK 441
>gi|219871972|ref|YP_002476347.1| ribosomal RNA small subunit methyltransferase B [Haemophilus
parasuis SH0165]
gi|219692176|gb|ACL33399.1| ribosomal RNA small subunit methyltransferase B [Haemophilus
parasuis SH0165]
Length = 432
Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 50/116 (43%), Positives = 71/116 (61%), Gaps = 5/116 (4%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FD+IL D PC+ +GV+RR+PDI WLR++ DI L++ KIL LW LKP G LL+ TC
Sbjct: 316 FDKILLDAPCSATGVIRRHPDIKWLRKEEDIAGLAELQGKILKALWARLKPNGVLLYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDS--IRLNSPGQ--LLPTVNKKQD-YDGFFYSLFQKR 137
S+ EE+ +Q F ++ + +N G+ L+ KQD DGFFY+ K+
Sbjct: 376 SVLPEENSQQIQHFLAQTPEAKLVEINVGGEQCLMKQFFPKQDGGDGFFYAKLVKQ 431
>gi|332289287|ref|YP_004420139.1| 16S rRNA methyltransferase B [Gallibacterium anatis UMN179]
gi|330432183|gb|AEC17242.1| 16S rRNA methyltransferase B [Gallibacterium anatis UMN179]
Length = 440
Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 51/124 (41%), Positives = 70/124 (56%), Gaps = 14/124 (11%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR+ +DI++L +IL LW+ LK G LL+ TC
Sbjct: 319 FDRILLDAPCSATGVIRRHPDIKWLRQPSDIEQLVALQKQILQALWQRLKVNGVLLYATC 378
Query: 87 SLWFEESEEQAIIFSKNHKD----SIRLNSPG-------QLLPTVNKKQDYDGFFYSLFQ 135
S+ +E+ EQ F H D ++ L G Q P +Q DGFFY+
Sbjct: 379 SILPQENSEQIRSFLATHSDAKLIAVDLGEQGIDTGFGFQCFP---HQQGGDGFFYAKLV 435
Query: 136 KRKE 139
K+ E
Sbjct: 436 KQAE 439
>gi|407893270|ref|ZP_11152300.1| ribosomal RNA small subunit methyltransferase B [Diplorickettsia
massiliensis 20B]
Length = 442
Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 48/126 (38%), Positives = 73/126 (57%), Gaps = 13/126 (10%)
Query: 22 YKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKL 81
++ + FDRIL D PC+GSGV+RR+PDI LRR+ D+ L++ ++L LW +LKP G L
Sbjct: 320 WQGEGFDRILLDAPCSGSGVIRRHPDIKRLRREQDLATLAQQQVELLTALWALLKPNGVL 379
Query: 82 LFVTCSLWFEESEEQAIIFSKNHKDS----------IRLNSPGQLLPTVNKKQDYDGFFY 131
++ TCS++ EE+ E F H + + + QL P +KQ DGF+Y
Sbjct: 380 VYATCSVFKEENSEVIQTFLAQHPTANVLPIAENWGVACSVGRQLFP---QKQGSDGFYY 436
Query: 132 SLFQKR 137
+ K+
Sbjct: 437 ARLIKQ 442
>gi|410610885|ref|ZP_11321990.1| ribosomal RNA small subunit methyltransferase B [Glaciecola
psychrophila 170]
gi|410169596|dbj|GAC35879.1| ribosomal RNA small subunit methyltransferase B [Glaciecola
psychrophila 170]
Length = 441
Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 52/129 (40%), Positives = 77/129 (59%), Gaps = 16/129 (12%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDR+L D PC+ +G+VRR+PDI WLR+ DI L KIL+ +W ++KPGG
Sbjct: 318 WWDGQLFDRVLLDAPCSATGIVRRHPDIKWLRKAKDIDVLVSLQKKILDAIWPLIKPGGM 377
Query: 81 LLFVTCSLWFEESEEQAIIF-SKN---------HKDSIRLNSPG-QLLPTVNKKQDYDGF 129
+L+VTCS+ EE+ Q F S+N + DS+ +PG Q+LP Q DGF
Sbjct: 378 MLYVTCSVLPEENYLQIRDFLSRNTNALLDDTFYNDSVE--NPGKQILP---GDQQMDGF 432
Query: 130 FYSLFQKRK 138
+Y+ K +
Sbjct: 433 YYARLLKSQ 441
>gi|416106946|ref|ZP_11590138.1| methionyl-tRNA formyltransferase [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|348005843|gb|EGY46312.1| methionyl-tRNA formyltransferase [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
Length = 191
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 71/123 (57%), Gaps = 11/123 (8%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR++ DI+ L + +IL LW LKP G LL+ TC
Sbjct: 68 FDRILLDAPCSATGVIRRHPDIKWLRKEADIEPLVELQEQILQALWPYLKPSGVLLYATC 127
Query: 87 SLWFEESEEQAIIFSKNHKDS--IRLNSPGQLLPT---------VNKKQDYDGFFYSLFQ 135
S+ EE+ Q F ++ D+ LN P ++L + + DGF+Y+
Sbjct: 128 SVLAEENARQIERFLQHTPDAQPTALNLPEEVLARNQSAVGFQFIPQTDGGDGFYYAKLV 187
Query: 136 KRK 138
KR+
Sbjct: 188 KRE 190
>gi|88801025|ref|ZP_01116574.1| hypothetical protein MED297_05044 [Reinekea blandensis MED297]
gi|88776228|gb|EAR07454.1| hypothetical protein MED297_05044 [Reinekea sp. MED297]
Length = 427
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 46/128 (35%), Positives = 75/128 (58%), Gaps = 13/128 (10%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
R++ FD +L D PC+G+GV+RR+PDI LR+ DIK LS+ ++L+ LW +KPGG
Sbjct: 302 RWWDGVPFDAVLLDAPCSGTGVIRRHPDIKLLRKSADIKALSQVQSRLLDRLWGTVKPGG 361
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDS----------IRLNSPGQLLPTVNKKQDYDGF 129
LL+ TCS+ +E+ ++ F + H ++ + Q LP + +DGF
Sbjct: 362 YLLYATCSVLPDENTDRIAAFLQAHPEAQEQPLALQADVDTEHGVQWLP---QSDGHDGF 418
Query: 130 FYSLFQKR 137
+Y+L +K+
Sbjct: 419 YYALLKKQ 426
>gi|416094614|ref|ZP_11588554.1| LOW QUALITY PROTEIN: methionyl-tRNA formyltransferase
[Aggregatibacter actinomycetemcomitans serotype b str.
I23C]
gi|348008648|gb|EGY48902.1| LOW QUALITY PROTEIN: methionyl-tRNA formyltransferase
[Aggregatibacter actinomycetemcomitans serotype b str.
I23C]
Length = 252
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 71/123 (57%), Gaps = 11/123 (8%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR++ DI+ L + +IL LW LKP G LL+ TC
Sbjct: 129 FDRILLDAPCSATGVIRRHPDIKWLRKEADIEPLVELQEQILQALWPYLKPSGVLLYATC 188
Query: 87 SLWFEESEEQAIIFSKNHKDS--IRLNSPGQLLPT---------VNKKQDYDGFFYSLFQ 135
S+ EE+ Q F ++ D+ LN P ++L + + DGF+Y+
Sbjct: 189 SVLAEENARQIERFLQHTPDAQPTALNLPEEVLARNQSAVGFQFIPQTDGGDGFYYAKLV 248
Query: 136 KRK 138
KR+
Sbjct: 249 KRE 251
>gi|92114986|ref|YP_574914.1| sun protein [Chromohalobacter salexigens DSM 3043]
gi|91798076|gb|ABE60215.1| 16S rRNA m(5)C-967 methyltransferase [Chromohalobacter salexigens
DSM 3043]
Length = 433
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 48/123 (39%), Positives = 70/123 (56%), Gaps = 13/123 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FD +L D PC+G+GV+RR+PDI LRR DI++L+ ++L+ W L PGG LL+ TC
Sbjct: 314 FDAVLLDAPCSGTGVIRRHPDIKRLRRPRDIRELAALQARLLDAAWHTLAPGGTLLYATC 373
Query: 87 SLWFEESEEQAIIFSKNHKDS------IRLNSPG----QLLPTVNKKQDYDGFFYSLFQK 136
S+ EE+ +Q F D+ P QLLP ++ +DGFFY+ +K
Sbjct: 374 SVMPEENADQVAAFLARTPDARAETIEAAWGRPAGDGRQLLPRID---GHDGFFYARLRK 430
Query: 137 RKE 139
+ E
Sbjct: 431 QSE 433
>gi|290477163|ref|YP_003470078.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Xenorhabdus bovienii
SS-2004]
gi|289176511|emb|CBJ83320.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Xenorhabdus bovienii
SS-2004]
Length = 428
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 9/116 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L +IL+ +W LK G L++ TC
Sbjct: 315 FDRILLDAPCSATGVIRRHPDIKWLRRNEDIDQLVTLQTEILDAIWPYLKKHGTLVYATC 374
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----RLNSPG-QLLPTVNKKQDYDGFFYSLFQK 136
S+ E+ +Q F H D+ L+ PG Q++P DGFFY+ K
Sbjct: 375 SILPHENSQQIKAFLGRHTDAALSDTGTLDKPGIQIIPETTGG---DGFFYARLTK 427
>gi|332304407|ref|YP_004432258.1| sun protein [Glaciecola sp. 4H-3-7+YE-5]
gi|410640999|ref|ZP_11351524.1| ribosomal RNA small subunit methyltransferase B [Glaciecola
chathamensis S18K6]
gi|332171736|gb|AEE20990.1| sun protein [Glaciecola sp. 4H-3-7+YE-5]
gi|410139359|dbj|GAC09711.1| ribosomal RNA small subunit methyltransferase B [Glaciecola
chathamensis S18K6]
Length = 437
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 46/125 (36%), Positives = 74/125 (59%), Gaps = 12/125 (9%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRIL D PC+ +G++RR+PDI WLR+ +DI L KI++ +W +LKPGG
Sbjct: 315 WWDGEQFDRILLDAPCSATGIIRRHPDIKWLRKSSDIDTLVALQAKIIDAIWPLLKPGGT 374
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSI--------RLNSPG-QLLPTVNKKQDYDGFFY 131
+L+ TCS+ E++ Q F + D+ ++ PG Q+LP ++ DGF+Y
Sbjct: 375 MLYATCSILPAENQLQISAFLERTADAALDPEFNNDAIDKPGRQILP---GEKHMDGFYY 431
Query: 132 SLFQK 136
+ K
Sbjct: 432 ARLLK 436
>gi|383188350|ref|YP_005198478.1| ribosomal RNA small subunit methyltransferase RsmB [Rahnella
aquatilis CIP 78.65 = ATCC 33071]
gi|371586608|gb|AEX50338.1| ribosomal RNA small subunit methyltransferase RsmB [Rahnella
aquatilis CIP 78.65 = ATCC 33071]
Length = 429
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 46/115 (40%), Positives = 73/115 (63%), Gaps = 9/115 (7%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
++ FDRIL D PC+ +GV+RR+PDI WLRR +DI +L+ +IL+ +W LK G +++
Sbjct: 313 DRIFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELASLQKEILHAVWPRLKSKGVMVY 372
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSI-----RLNSPG-QLLPTVNKKQDYDGFFYS 132
TCS+ +E+ +Q F ++H+D+ + PG Q LP +D DGF+Y+
Sbjct: 373 ATCSILPDENCQQIASFLESHQDATLVETGTMEKPGRQNLP---HAEDGDGFYYA 424
>gi|348027486|ref|YP_004870172.1| 16S rRNA m(5)C 967 methyltransferase [Glaciecola nitratireducens
FR1064]
gi|347944829|gb|AEP28179.1| 16S rRNA m(5)C 967 methyltransferase [Glaciecola nitratireducens
FR1064]
Length = 477
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 50/126 (39%), Positives = 70/126 (55%), Gaps = 12/126 (9%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
R K+K +DRIL D PC+ +GV+RR+PDI WLR+ DI +IL +W+ +KPGG
Sbjct: 353 RVLKDKQYDRILLDAPCSATGVIRRHPDIRWLRKATDIDTTVALQKRILAQIWQRVKPGG 412
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRL--------NSPG-QLLPTVNKKQDYDGFF 130
LL+ TCS+ +E+E Q F D+ L PG Q+LP + DGF+
Sbjct: 413 ILLYATCSILKQENEYQIAEFLATQADASLLPMHENDTAECPGLQILP---GQAQMDGFY 469
Query: 131 YSLFQK 136
Y+ K
Sbjct: 470 YARLLK 475
>gi|304313374|ref|YP_003812972.1| ribosomal RNA small subunit methyltransferase B [gamma
proteobacterium HdN1]
gi|301799107|emb|CBL47350.1| Ribosomal RNA small subunit methyltransferase B [gamma
proteobacterium HdN1]
Length = 492
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 48/126 (38%), Positives = 74/126 (58%), Gaps = 19/126 (15%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +G++RR+PDI WLRR++DI L++ +L + +LK GG LL+ TC
Sbjct: 323 FDRILLDAPCSATGIIRRHPDIKWLRRQSDINALAEQQLSLLKTAFALLKEGGTLLYATC 382
Query: 87 SLWFEESEE--------------QAIIFSKNHKDSIRLNSPG--QLLPTVNKKQDYDGFF 130
S+ +E++ QA+ F + + +P QLLPTV Q +DGFF
Sbjct: 383 SVLPQENDRIVARFLAETPAAILQALQFPSQIPPANGIPTPTGFQLLPTV---QGHDGFF 439
Query: 131 YSLFQK 136
Y++ ++
Sbjct: 440 YAMLRR 445
>gi|262089741|gb|ACY24835.1| ribosomal RNA small subunit methyltransferase B [uncultured
organism]
Length = 430
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 46/122 (37%), Positives = 73/122 (59%), Gaps = 13/122 (10%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRIL D PC+ +G++RR+PDI LR +++ KL + K+LNNLW +LKPGG
Sbjct: 307 WWDGELFDRILLDAPCSATGIIRRHPDIKVLRTPDELDKLGELQAKLLNNLWSLLKPGGV 366
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDS----------IRLNSPGQLLPTVNKKQDYDGFF 130
L++ TCS+ +E+ + F K +D+ I QLLP+ + +DGF+
Sbjct: 367 LIYATCSVMPKENTQVIEAFLKRKRDATCDLLDASWGIEQAYGRQLLPST---EGHDGFY 423
Query: 131 YS 132
Y+
Sbjct: 424 YA 425
>gi|254362113|ref|ZP_04978233.1| rRNA (cytosine-C(5)-)-methyltransferase [Mannheimia haemolytica
PHL213]
gi|261491771|ref|ZP_05988351.1| FMU protein [Mannheimia haemolytica serotype A2 str. BOVINE]
gi|261495480|ref|ZP_05991927.1| FMU protein [Mannheimia haemolytica serotype A2 str. OVINE]
gi|153093674|gb|EDN74629.1| rRNA (cytosine-C(5)-)-methyltransferase [Mannheimia haemolytica
PHL213]
gi|261308814|gb|EEY10070.1| FMU protein [Mannheimia haemolytica serotype A2 str. OVINE]
gi|261312610|gb|EEY13733.1| FMU protein [Mannheimia haemolytica serotype A2 str. BOVINE]
Length = 448
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 50/121 (41%), Positives = 70/121 (57%), Gaps = 11/121 (9%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR++ DI +L+ +IL LW+ LKP G LL+ TC
Sbjct: 331 FDRILLDAPCSATGVIRRHPDIKWLRKEGDIAELATLQGEILKALWQRLKPNGILLYATC 390
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS--------PGQLLPTVNKKQDYDGFFYSLFQKRK 138
S+ +E+ EQ F ++ ++ +L Q P N DGFFY+ QK
Sbjct: 391 SVLPQENSEQIQRFLQDTPNAKQLEIDFNGEKVLEKQFFPQPNGG---DGFFYAKLQKVA 447
Query: 139 E 139
E
Sbjct: 448 E 448
>gi|452744010|ref|ZP_21943862.1| 16S rRNA methyltransferase B [Mannheimia haemolytica serotype 6
str. H23]
gi|452087927|gb|EME04298.1| 16S rRNA methyltransferase B [Mannheimia haemolytica serotype 6
str. H23]
Length = 443
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 50/121 (41%), Positives = 70/121 (57%), Gaps = 11/121 (9%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR++ DI +L+ +IL LW+ LKP G LL+ TC
Sbjct: 326 FDRILLDAPCSATGVIRRHPDIKWLRKEGDIAELATLQGEILKALWQRLKPNGILLYATC 385
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS--------PGQLLPTVNKKQDYDGFFYSLFQKRK 138
S+ +E+ EQ F ++ ++ +L Q P N DGFFY+ QK
Sbjct: 386 SVLPQENSEQIQRFLQDTPNAKQLEIDFNGEKVLEKQFFPQPNGG---DGFFYAKLQKVA 442
Query: 139 E 139
E
Sbjct: 443 E 443
>gi|410629255|ref|ZP_11339959.1| ribosomal RNA small subunit methyltransferase B [Glaciecola
mesophila KMM 241]
gi|410151051|dbj|GAC26728.1| ribosomal RNA small subunit methyltransferase B [Glaciecola
mesophila KMM 241]
Length = 437
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 46/125 (36%), Positives = 72/125 (57%), Gaps = 12/125 (9%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRIL D PC+ +G++RR+PDI WLR+ +DI L KI++ +W +LKPGG
Sbjct: 315 WWDGQLFDRILLDAPCSATGIIRRHPDIKWLRKSSDIDVLVALQSKIIDAMWALLKPGGT 374
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSI--------RLNSPG-QLLPTVNKKQDYDGFFY 131
+L+ TCS+ E++ Q F D++ PG Q+LP ++ DGF+Y
Sbjct: 375 MLYATCSILPAENQLQISAFLNRTPDALLDDKFENDAAQKPGRQILP---GEKQMDGFYY 431
Query: 132 SLFQK 136
+ K
Sbjct: 432 ARLLK 436
>gi|257455153|ref|ZP_05620391.1| ribosomal RNA small subunit methyltransferase B [Enhydrobacter
aerosaccus SK60]
gi|257447486|gb|EEV22491.1| ribosomal RNA small subunit methyltransferase B [Enhydrobacter
aerosaccus SK60]
Length = 450
Score = 93.2 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 48/127 (37%), Positives = 68/127 (53%), Gaps = 10/127 (7%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
F + FD I+ D PCT +GV+RR+PDI LR + D+ + + +IL N W L G
Sbjct: 323 FQADTQFDVIVLDAPCTATGVIRRHPDIALLRTEQDVGQTAALQARILANCWHNLATNGY 382
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDS----IRLNSPGQLLPTVN------KKQDYDGFF 130
LL++TCS+ E+E Q F HK + LN P Q+ + + D DGF+
Sbjct: 383 LLYITCSMLKAENENQLQAFLATHKAAQIVDFSLNLPNQIKQNIGYQCLPLHQNDGDGFY 442
Query: 131 YSLFQKR 137
Y+L QKR
Sbjct: 443 YALLQKR 449
>gi|444337068|ref|ZP_21151100.1| LOW QUALITY PROTEIN: methionyl-tRNA formyltransferase
[Aggregatibacter actinomycetemcomitans serotype b str.
SCC4092]
gi|443547680|gb|ELT57132.1| LOW QUALITY PROTEIN: methionyl-tRNA formyltransferase
[Aggregatibacter actinomycetemcomitans serotype b str.
SCC4092]
Length = 770
Score = 93.2 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 49/123 (39%), Positives = 71/123 (57%), Gaps = 11/123 (8%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR++ DI+ L + +IL LW LKP G LL+ TC
Sbjct: 647 FDRILLDAPCSATGVIRRHPDIKWLRKEADIEPLVELQEQILQALWPYLKPSGVLLYATC 706
Query: 87 SLWFEESEEQAIIFSKNHKDS--IRLNSPGQLLPT---------VNKKQDYDGFFYSLFQ 135
S+ EE+ Q F ++ D+ LN P ++L + + DGF+Y+
Sbjct: 707 SVLAEENARQIERFLQHTPDAQPTALNLPEEVLARNQSAVGFQFIPQTDGGDGFYYAKLV 766
Query: 136 KRK 138
KR+
Sbjct: 767 KRE 769
>gi|444348295|ref|ZP_21155991.1| LOW QUALITY PROTEIN: methionyl-tRNA formyltransferase
[Aggregatibacter actinomycetemcomitans serotype b str.
S23A]
gi|443547349|gb|ELT56863.1| LOW QUALITY PROTEIN: methionyl-tRNA formyltransferase
[Aggregatibacter actinomycetemcomitans serotype b str.
S23A]
Length = 770
Score = 93.2 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 49/123 (39%), Positives = 71/123 (57%), Gaps = 11/123 (8%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR++ DI+ L + +IL LW LKP G LL+ TC
Sbjct: 647 FDRILLDAPCSATGVIRRHPDIKWLRKEADIEPLVELQEQILQALWPYLKPSGVLLYATC 706
Query: 87 SLWFEESEEQAIIFSKNHKDS--IRLNSPGQLLPT---------VNKKQDYDGFFYSLFQ 135
S+ EE+ Q F ++ D+ LN P ++L + + DGF+Y+
Sbjct: 707 SVLAEENARQIERFLQHTPDAQPTALNLPEEVLARNQSAVGFQFIPQTDGGDGFYYAKLV 766
Query: 136 KRK 138
KR+
Sbjct: 767 KRE 769
>gi|444347193|ref|ZP_21155138.1| LOW QUALITY PROTEIN: methionyl-tRNA formyltransferase
[Aggregatibacter actinomycetemcomitans serotype c str.
AAS4A]
gi|443540761|gb|ELT51288.1| LOW QUALITY PROTEIN: methionyl-tRNA formyltransferase
[Aggregatibacter actinomycetemcomitans serotype c str.
AAS4A]
Length = 769
Score = 93.2 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 49/123 (39%), Positives = 71/123 (57%), Gaps = 11/123 (8%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR++ DI+ L + +IL LW LKP G LL+ TC
Sbjct: 646 FDRILLDAPCSATGVIRRHPDIKWLRKEADIEPLVELQEQILQALWPYLKPSGVLLYATC 705
Query: 87 SLWFEESEEQAIIFSKNHKDS--IRLNSPGQLLPT---------VNKKQDYDGFFYSLFQ 135
S+ EE+ Q F ++ D+ LN P ++L + + DGF+Y+
Sbjct: 706 SVLAEENARQIERFLQHTPDAQPTALNLPEEVLARNQSAVGFQFIPQTDGGDGFYYAKLV 765
Query: 136 KRK 138
KR+
Sbjct: 766 KRE 768
>gi|365966642|ref|YP_004948204.1| LOW QUALITY PROTEIN: methionyl-tRNA formyltransferase
[Aggregatibacter actinomycetemcomitans ANH9381]
gi|365745555|gb|AEW76460.1| LOW QUALITY PROTEIN: methionyl-tRNA formyltransferase
[Aggregatibacter actinomycetemcomitans ANH9381]
Length = 769
Score = 93.2 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 49/123 (39%), Positives = 71/123 (57%), Gaps = 11/123 (8%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR++ DI+ L + +IL LW LKP G LL+ TC
Sbjct: 646 FDRILLDAPCSATGVIRRHPDIKWLRKEADIEPLVELQEQILQALWPYLKPSGVLLYATC 705
Query: 87 SLWFEESEEQAIIFSKNHKDS--IRLNSPGQLLPT---------VNKKQDYDGFFYSLFQ 135
S+ EE+ Q F ++ D+ LN P ++L + + DGF+Y+
Sbjct: 706 SVLAEENARQIERFLQHTPDAQPTALNLPEEVLARNQSAVGFQFIPQTDGGDGFYYAKLV 765
Query: 136 KRK 138
KR+
Sbjct: 766 KRE 768
>gi|415770731|ref|ZP_11485000.1| methionyl-tRNA formyltransferase [Aggregatibacter
actinomycetemcomitans D17P-2]
gi|348656637|gb|EGY74246.1| methionyl-tRNA formyltransferase [Aggregatibacter
actinomycetemcomitans D17P-2]
Length = 451
Score = 93.2 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 49/123 (39%), Positives = 71/123 (57%), Gaps = 11/123 (8%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR++ DI+ L + +IL LW LKP G LL+ TC
Sbjct: 328 FDRILLDAPCSATGVIRRHPDIKWLRKEADIEPLVELQEQILQALWPYLKPSGVLLYATC 387
Query: 87 SLWFEESEEQAIIFSKNHKDS--IRLNSPGQLLPT---------VNKKQDYDGFFYSLFQ 135
S+ EE+ Q F ++ D+ LN P ++L + + DGF+Y+
Sbjct: 388 SVLAEENARQIERFLQHTPDAQPTALNLPEEVLARNQSAVGFQFIPQTDGGDGFYYAKLV 447
Query: 136 KRK 138
KR+
Sbjct: 448 KRE 450
>gi|416075607|ref|ZP_11585098.1| LOW QUALITY PROTEIN: methionyl-tRNA formyltransferase
[Aggregatibacter actinomycetemcomitans serotype b str.
SCC1398]
gi|348006092|gb|EGY46556.1| LOW QUALITY PROTEIN: methionyl-tRNA formyltransferase
[Aggregatibacter actinomycetemcomitans serotype b str.
SCC1398]
Length = 451
Score = 93.2 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 49/123 (39%), Positives = 71/123 (57%), Gaps = 11/123 (8%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR++ DI+ L + +IL LW LKP G LL+ TC
Sbjct: 328 FDRILLDAPCSATGVIRRHPDIKWLRKEADIEPLVELQEQILQALWPYLKPSGVLLYATC 387
Query: 87 SLWFEESEEQAIIFSKNHKDS--IRLNSPGQLLPT---------VNKKQDYDGFFYSLFQ 135
S+ EE+ Q F ++ D+ LN P ++L + + DGF+Y+
Sbjct: 388 SVLAEENARQIERFLQHTPDAQPTALNLPEEVLARNQSAVGFQFIPQTDGGDGFYYAKLV 447
Query: 136 KRK 138
KR+
Sbjct: 448 KRE 450
>gi|261866823|ref|YP_003254745.1| methionyl-tRNA formyltransferase [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|261412155|gb|ACX81526.1| methionyl-tRNA formyltransferase [Aggregatibacter
actinomycetemcomitans D11S-1]
Length = 451
Score = 93.2 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 49/123 (39%), Positives = 71/123 (57%), Gaps = 11/123 (8%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR++ DI+ L + +IL LW LKP G LL+ TC
Sbjct: 328 FDRILLDAPCSATGVIRRHPDIKWLRKEADIEPLVELQEQILQALWPYLKPSGVLLYATC 387
Query: 87 SLWFEESEEQAIIFSKNHKDS--IRLNSPGQLLPT---------VNKKQDYDGFFYSLFQ 135
S+ EE+ Q F ++ D+ LN P ++L + + DGF+Y+
Sbjct: 388 SVLAEENARQIERFLQHTPDAQPTALNLPEEVLARNQSAVGFQFIPQTDGGDGFYYAKLV 447
Query: 136 KRK 138
KR+
Sbjct: 448 KRE 450
>gi|109896353|ref|YP_659608.1| sun protein [Pseudoalteromonas atlantica T6c]
gi|109698634|gb|ABG38554.1| 16S rRNA m(5)C-967 methyltransferase [Pseudoalteromonas atlantica
T6c]
Length = 437
Score = 93.2 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 46/125 (36%), Positives = 72/125 (57%), Gaps = 12/125 (9%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRIL D PC+ +G++RR+PDI WLR+ +DI L KI++ +W +LKPGG
Sbjct: 315 WWDGQLFDRILLDAPCSATGIIRRHPDIKWLRKSSDIDVLVALQSKIIDAMWALLKPGGT 374
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSI--------RLNSPG-QLLPTVNKKQDYDGFFY 131
+L+ TCS+ E++ Q F D++ PG Q+LP ++ DGF+Y
Sbjct: 375 MLYATCSILPAENQLQINAFLNRTPDALLDDKFDNDAAQKPGRQILP---GEKQMDGFYY 431
Query: 132 SLFQK 136
+ K
Sbjct: 432 ARLLK 436
>gi|322831104|ref|YP_004211131.1| sun protein [Rahnella sp. Y9602]
gi|384256272|ref|YP_005400206.1| 16S rRNA methyltransferase B [Rahnella aquatilis HX2]
gi|321166305|gb|ADW72004.1| sun protein [Rahnella sp. Y9602]
gi|380752248|gb|AFE56639.1| 16S rRNA methyltransferase B [Rahnella aquatilis HX2]
Length = 429
Score = 93.2 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 47/119 (39%), Positives = 74/119 (62%), Gaps = 9/119 (7%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
++ FDRIL D PC+ +GV+RR+PDI WLRR +DI +L+ +IL+ +W LK G +++
Sbjct: 313 DRIFDRILLDAPCSATGVIRRHPDIKWLRRDSDIVELASLQKEILDAVWPRLKSKGIMVY 372
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSI-----RLNSPG-QLLPTVNKKQDYDGFFYSLFQK 136
TCS+ +E+ +Q F ++H+D+ + PG Q LP +D DGF+Y+ K
Sbjct: 373 ATCSILPDENCQQIASFLESHQDATLVETGTMEKPGRQNLP---HPEDGDGFYYAKLVK 428
>gi|389696115|ref|ZP_10183757.1| ribosomal RNA small subunit methyltransferase RsmB [Microvirga sp.
WSM3557]
gi|388584921|gb|EIM25216.1| ribosomal RNA small subunit methyltransferase RsmB [Microvirga sp.
WSM3557]
Length = 437
Score = 93.2 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 47/132 (35%), Positives = 67/132 (50%), Gaps = 21/132 (15%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FD IL D PC+ +G +RR+PD+ W + + DI+KLS ++L+ ++LKPGG+L++ TC
Sbjct: 301 FDAILLDAPCSATGTIRRHPDVAWTKSEEDIRKLSGLQSRLLDKAARLLKPGGRLVYCTC 360
Query: 87 SLWFEESEEQAIIFSKNHKDSIR---------------------LNSPGQLLPTVNKKQD 125
SL EE E QA F H D R P QL T + +
Sbjct: 361 SLEAEEGERQAEAFLARHPDFTRKPIAADEIGGLTECITPHGDLRTLPSQLTLTEHDRSG 420
Query: 126 YDGFFYSLFQKR 137
DGFF + F +
Sbjct: 421 LDGFFVARFMHK 432
>gi|410629535|ref|ZP_11340235.1| ribosomal RNA small subunit methyltransferase B [Glaciecola arctica
BSs20135]
gi|410151020|dbj|GAC17102.1| ribosomal RNA small subunit methyltransferase B [Glaciecola arctica
BSs20135]
Length = 433
Score = 93.2 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 73/126 (57%), Gaps = 12/126 (9%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
+++ + FDR+L D PC+ +G++RR+PDI WLR+ DI L +IL+ +W ++KPGG
Sbjct: 310 KWWDGQLFDRVLLDAPCSATGIIRRHPDIKWLRKAKDIDVLVNLQKQILDAIWPLVKPGG 369
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS--------PG-QLLPTVNKKQDYDGFF 130
LL+ TCS+ EE+ Q F +++ N+ PG Q+LP Q DGF+
Sbjct: 370 TLLYATCSILPEENHLQISDFLSRTTNALLDNTFYNDNDDKPGKQILP---GDQQMDGFY 426
Query: 131 YSLFQK 136
Y+ K
Sbjct: 427 YARLLK 432
>gi|254447515|ref|ZP_05060981.1| ribosomal RNA small subunit methyltransferase B [gamma
proteobacterium HTCC5015]
gi|198262858|gb|EDY87137.1| ribosomal RNA small subunit methyltransferase B [gamma
proteobacterium HTCC5015]
Length = 431
Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 52/145 (35%), Positives = 77/145 (53%), Gaps = 14/145 (9%)
Query: 3 AGEIESSDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSK 62
+ E+ S+D+ R++ + FDRIL D PC+ SGV+RR+PDI LR+ DI L +
Sbjct: 290 SAELLSADLRDTA----RWWNGQAFDRILLDAPCSASGVIRRHPDIKLLRQPEDINALVE 345
Query: 63 YSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNK 122
+ L+ W LK GG LL+ TCSL+ E++ Q F + H D+ LP ++
Sbjct: 346 LQAQCLDAAWSTLKEGGTLLYATCSLFKAENQHQVREFLERHSDAALDAFSETALPGIDT 405
Query: 123 --KQDY--------DGFFYSLFQKR 137
Q + DGFFY+ +KR
Sbjct: 406 GYGQQFFPGGPFNGDGFFYARLRKR 430
>gi|422784174|ref|ZP_16836957.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TW10509]
gi|323974759|gb|EGB69872.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TW10509]
Length = 456
Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 343 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLIYATC 402
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 403 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 456
>gi|52426258|ref|YP_089395.1| Sun protein [Mannheimia succiniciproducens MBEL55E]
gi|52308310|gb|AAU38810.1| Sun protein [Mannheimia succiniciproducens MBEL55E]
Length = 470
Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 51/119 (42%), Positives = 71/119 (59%), Gaps = 12/119 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR++ DI +L+ +IL LWK LKP G LL+ TC
Sbjct: 349 FDRILLDAPCSATGVIRRHPDIKWLRQEQDIGQLAALQQQILTALWKKLKPNGILLYATC 408
Query: 87 SLWFEESEEQAIIFSKNHKD--------SIRLNSPG-QLLPTVNKKQDYDGFFYSLFQK 136
SL +E+ EQ F N D + + N G Q +P+ + DGF+Y+ +K
Sbjct: 409 SLLPQENSEQIRTFLANTPDAKLEPLPFATQENEIGKQFIPS---EFSGDGFYYAKLRK 464
>gi|419198994|ref|ZP_13742288.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC8A]
gi|378044151|gb|EHW06572.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC8A]
Length = 420
Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 307 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 366
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 367 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGT---EEGDGFFYAKLIKK 420
>gi|91212715|ref|YP_542701.1| 16S rRNA methyltransferase GidB [Escherichia coli UTI89]
gi|117625571|ref|YP_858894.1| 16S rRNA methyltransferase B [Escherichia coli APEC O1]
gi|218560350|ref|YP_002393263.1| 16S rRNA methyltransferase B [Escherichia coli S88]
gi|237703018|ref|ZP_04533499.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|386601307|ref|YP_006102813.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
IHE3034]
gi|386605839|ref|YP_006112139.1| 16S rRNA methyltransferase B [Escherichia coli UM146]
gi|417087033|ref|ZP_11954080.1| 16S rRNA methyltransferase B [Escherichia coli cloneA_i1]
gi|419944197|ref|ZP_14460706.1| 16S rRNA methyltransferase B [Escherichia coli HM605]
gi|422361612|ref|ZP_16442229.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 110-3]
gi|422751129|ref|ZP_16805038.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
H252]
gi|422757058|ref|ZP_16810880.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
H263]
gi|422841297|ref|ZP_16889266.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
H397]
gi|432359736|ref|ZP_19602949.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE4]
gi|432364534|ref|ZP_19607689.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE5]
gi|432467600|ref|ZP_19709678.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE205]
gi|432575521|ref|ZP_19811992.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE55]
gi|432584813|ref|ZP_19821204.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE57]
gi|432589666|ref|ZP_19826018.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE58]
gi|432599535|ref|ZP_19835805.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE62]
gi|432756216|ref|ZP_19990760.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE22]
gi|432780296|ref|ZP_20014516.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE59]
gi|432789289|ref|ZP_20023416.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE65]
gi|432822724|ref|ZP_20056412.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE118]
gi|432824178|ref|ZP_20057848.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE123]
gi|433006869|ref|ZP_20195292.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE227]
gi|433009484|ref|ZP_20197896.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE229]
gi|433074539|ref|ZP_20261180.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE129]
gi|433121851|ref|ZP_20307511.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE157]
gi|433155434|ref|ZP_20340366.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE176]
gi|433165275|ref|ZP_20350005.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE179]
gi|433170274|ref|ZP_20354894.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE180]
gi|433185002|ref|ZP_20369239.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE85]
gi|123265979|sp|Q1R644.1|RSMB_ECOUT RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|224493249|sp|A1AGI0.1|RSMB_ECOK1 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|254766854|sp|B7MCQ4.1|RSMB_ECO45 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|91074289|gb|ABE09170.1| SUN protein [Escherichia coli UTI89]
gi|115514695|gb|ABJ02770.1| Sun protein [Escherichia coli APEC O1]
gi|218367119|emb|CAR04893.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli S88]
gi|226902282|gb|EEH88541.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|294490375|gb|ADE89131.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
IHE3034]
gi|307628323|gb|ADN72627.1| 16S rRNA methyltransferase B [Escherichia coli UM146]
gi|315284577|gb|EFU44022.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 110-3]
gi|323950202|gb|EGB46084.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
H252]
gi|323954589|gb|EGB50372.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
H263]
gi|355349953|gb|EHF99154.1| 16S rRNA methyltransferase B [Escherichia coli cloneA_i1]
gi|371604549|gb|EHN93176.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
H397]
gi|388419537|gb|EIL79266.1| 16S rRNA methyltransferase B [Escherichia coli HM605]
gi|430874045|gb|ELB97610.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE4]
gi|430883385|gb|ELC06379.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE5]
gi|430991220|gb|ELD07624.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE205]
gi|431104802|gb|ELE09166.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE55]
gi|431114713|gb|ELE18240.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE57]
gi|431117795|gb|ELE21019.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE58]
gi|431128351|gb|ELE30535.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE62]
gi|431299757|gb|ELF89323.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE22]
gi|431324688|gb|ELG12104.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE59]
gi|431335169|gb|ELG22309.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE65]
gi|431365457|gb|ELG51962.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE118]
gi|431378703|gb|ELG63694.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE123]
gi|431510316|gb|ELH88561.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE227]
gi|431521410|gb|ELH98655.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE229]
gi|431584296|gb|ELI56280.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE129]
gi|431639569|gb|ELJ07424.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE157]
gi|431671151|gb|ELJ37437.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE176]
gi|431684379|gb|ELJ49987.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE179]
gi|431685044|gb|ELJ50647.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE180]
gi|431703056|gb|ELJ67747.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE85]
Length = 429
Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWSHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SMLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|443992|emb|CAA54370.1| fmv [Escherichia coli K-12]
Length = 191
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 78/133 (58%), Gaps = 11/133 (8%)
Query: 13 KKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNN 70
K+ + R+ ++ + FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+
Sbjct: 62 KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDA 121
Query: 71 LWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQ 124
+W LK GG L++ TCS+ EE+ Q F + D+ + PG Q LP +
Sbjct: 122 IWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---E 178
Query: 125 DYDGFFYSLFQKR 137
+ DGFFY+ K+
Sbjct: 179 EGDGFFYAKLIKK 191
>gi|94502186|ref|ZP_01308683.1| sun protein, partial [Bermanella marisrubri]
gi|94425689|gb|EAT10700.1| sun protein [Oceanobacter sp. RED65]
Length = 234
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 76/127 (59%), Gaps = 13/127 (10%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FD IL D+PC+ +GV+RR+PDI LR++ DI L++ IL+ W +LKPGG+
Sbjct: 110 WWDGQAFDGILLDVPCSATGVIRRHPDIKLLRQREDIDNLAQLQQAILSKAWTLLKPGGR 169
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDS--IRLN-SPG-------QLLPTVNKKQDYDGFF 130
LL+ TCS+ E++ F + H DS ++L+ + G Q P N + DGFF
Sbjct: 170 LLYATCSVTQAENQNNIEAFLQTHPDSELVQLHFNTGLDTKYGWQFFPDKNAQ---DGFF 226
Query: 131 YSLFQKR 137
Y+L +K
Sbjct: 227 YALLRKE 233
>gi|422333633|ref|ZP_16414642.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
4_1_47FAA]
gi|373245347|gb|EHP64818.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
4_1_47FAA]
Length = 454
Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 341 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 400
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 401 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 454
>gi|415851176|ref|ZP_11527925.1| ribosomal RNA small subunit methyltransferase B [Shigella sonnei
53G]
gi|323164853|gb|EFZ50644.1| ribosomal RNA small subunit methyltransferase B [Shigella sonnei
53G]
Length = 454
Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 341 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 400
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 401 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 454
>gi|289824193|ref|ZP_06543788.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhi str. E98-3139]
Length = 403
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 64/95 (67%), Gaps = 2/95 (2%)
Query: 13 KKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNN 70
K+ + R+ ++ + FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+
Sbjct: 300 KQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDA 359
Query: 71 LWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 105
+W LKPGG L++ TCS+ EE+ +Q FS + +
Sbjct: 360 VWPRLKPGGTLVYATCSVLPEENRDQIKAFSTHSR 394
>gi|120552984|ref|YP_957335.1| sun protein [Marinobacter aquaeolei VT8]
gi|120322833|gb|ABM17148.1| 16S rRNA m(5)C-967 methyltransferase [Marinobacter aquaeolei VT8]
Length = 433
Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 45/120 (37%), Positives = 70/120 (58%), Gaps = 13/120 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D+PC+ +GV+RR+PDI LRR++DI L+ +L +W +LKPGG+L++ TC
Sbjct: 314 FDRILLDVPCSATGVIRRHPDIKLLRRESDIVPLASIQLGLLEAMWSILKPGGRLVYATC 373
Query: 87 SLWFEESEEQAIIFSKNHKDSI----------RLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
S++ +E+ F K + +N+ QL P +DGFFY++ +K
Sbjct: 374 SVFPQENHRIIQRFLKQQNQATLKCIEADWGRDMNTGRQLFP---DPDSHDGFFYAVLEK 430
>gi|254490995|ref|ZP_05104176.1| ribosomal RNA small subunit methyltransferase B [Methylophaga
thiooxidans DMS010]
gi|224463508|gb|EEF79776.1| ribosomal RNA small subunit methyltransferase B [Methylophaga
thiooxydans DMS010]
Length = 406
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 73/124 (58%), Gaps = 7/124 (5%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRIL D PC+GSGV+RR+PDI LRR DI L+ ++L+ LW +LK G
Sbjct: 283 WWDGELFDRILIDAPCSGSGVIRRHPDIKLLRRPEDITSLAHTQQQLLDKLWPLLKADGL 342
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRL---NSPGQLLPTVNKK----QDYDGFFYSL 133
+++ TCS + +E+E+Q F + H D+ L +P P ++ DGF+Y+
Sbjct: 343 MVYTTCSAFKKENEQQIEAFLQRHPDAKELRFEQAPATARPYGYQRLPGDDVMDGFYYAC 402
Query: 134 FQKR 137
++R
Sbjct: 403 LRRR 406
>gi|420365321|ref|ZP_14866188.1| ribosomal RNA small subunit methyltransferase B [Shigella sonnei
4822-66]
gi|391292350|gb|EIQ50686.1| ribosomal RNA small subunit methyltransferase B [Shigella sonnei
4822-66]
Length = 454
Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 341 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 400
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 401 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 454
>gi|53803078|ref|YP_115239.1| sun protein [Methylococcus capsulatus str. Bath]
gi|53756839|gb|AAU91130.1| sun protein [Methylococcus capsulatus str. Bath]
Length = 431
Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 47/123 (38%), Positives = 71/123 (57%), Gaps = 7/123 (5%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRIL D PC+ +GV+RR+PDI LR+ D+ L++ IL W +LKPGG
Sbjct: 307 WWDGRPFDRILLDAPCSATGVIRRHPDIKLLRQAVDLDTLNELQAAILTAAWPLLKPGGI 366
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQL-LPTVNKKQ------DYDGFFYSL 133
L++ TCS+ E+E Q F + H D+ L P +P + +Q DGF+Y+L
Sbjct: 367 LVYATCSVIRAENEAQMSRFLEAHDDAAELPLPAAWGIPLRHGRQILTGESGMDGFYYAL 426
Query: 134 FQK 136
+K
Sbjct: 427 LRK 429
>gi|422831894|ref|ZP_16880025.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
B093]
gi|371615976|gb|EHO04352.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
B093]
Length = 429
Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQVKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|417641188|ref|ZP_12291320.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TX1999]
gi|345391490|gb|EGX21279.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TX1999]
Length = 420
Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 307 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 366
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 367 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGT---EEGDGFFYAKLIKK 420
>gi|425064282|ref|ZP_18467407.1| Ribosomal RNA small subunit methyltransferase B [Pasteurella
multocida subsp. gallicida X73]
gi|404381224|gb|EJZ77702.1| Ribosomal RNA small subunit methyltransferase B [Pasteurella
multocida subsp. gallicida X73]
Length = 446
Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 51/119 (42%), Positives = 67/119 (56%), Gaps = 12/119 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR+ +DI L +IL LW +LKP G LL+ TC
Sbjct: 328 FDRILLDAPCSATGVIRRHPDIKWLRQASDISALVTLQKQILQALWTILKPNGILLYATC 387
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSP---------GQLLPTVNKKQDYDGFFYSLFQK 136
S+ EE+ Q F N+ D+ P Q LPT N DGF+Y+ +K
Sbjct: 388 SVLPEENALQIEQFLTNNVDAKLEPLPFTAVEGAVGYQFLPTENGG---DGFYYAKLRK 443
>gi|417240733|ref|ZP_12036923.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
9.0111]
gi|386212768|gb|EII23212.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
9.0111]
Length = 454
Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 341 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 400
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 401 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 454
>gi|424079445|ref|ZP_17816412.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
FDA505]
gi|424111833|ref|ZP_17846062.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
93-001]
gi|424123959|ref|ZP_17857265.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA5]
gi|424136431|ref|ZP_17868878.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA10]
gi|424142984|ref|ZP_17874850.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA14]
gi|424457860|ref|ZP_17908969.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA33]
gi|424470622|ref|ZP_17920433.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA41]
gi|424571311|ref|ZP_18011854.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC4448]
gi|425313315|ref|ZP_18702489.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1735]
gi|425319292|ref|ZP_18708075.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1736]
gi|425325391|ref|ZP_18713742.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1737]
gi|425350051|ref|ZP_18736513.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1849]
gi|425374850|ref|ZP_18759487.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1864]
gi|428949024|ref|ZP_19021295.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
88.1467]
gi|429016594|ref|ZP_19083471.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
95.0943]
gi|429080917|ref|ZP_19144041.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
99.0713]
gi|444972211|ref|ZP_21289536.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
99.1793]
gi|444994078|ref|ZP_21310694.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA13]
gi|390640658|gb|EIN20109.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
FDA505]
gi|390658182|gb|EIN35982.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
93-001]
gi|390678573|gb|EIN54524.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA5]
gi|390693637|gb|EIN68256.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA10]
gi|390698117|gb|EIN72506.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA14]
gi|390742865|gb|EIO13854.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA33]
gi|390764769|gb|EIO33966.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA41]
gi|390893496|gb|EIP53047.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC4448]
gi|408225014|gb|EKI48710.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1735]
gi|408236153|gb|EKI59065.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1736]
gi|408239910|gb|EKI62635.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1737]
gi|408263722|gb|EKI84556.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1849]
gi|408289404|gb|EKJ08165.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1864]
gi|427206250|gb|EKV76467.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
88.1467]
gi|427259193|gb|EKW25257.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
95.0943]
gi|427326266|gb|EKW87689.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
99.0713]
gi|444575310|gb|ELV51554.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
99.1793]
gi|444616800|gb|ELV90949.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA13]
Length = 420
Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 307 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 366
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 367 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 420
>gi|425066439|ref|ZP_18469559.1| Ribosomal RNA small subunit methyltransferase B [Pasteurella
multocida subsp. gallicida P1059]
gi|404381457|gb|EJZ77930.1| Ribosomal RNA small subunit methyltransferase B [Pasteurella
multocida subsp. gallicida P1059]
Length = 446
Score = 92.8 bits (229), Expect = 5e-17, Method: Composition-based stats.
Identities = 50/119 (42%), Positives = 68/119 (57%), Gaps = 12/119 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR+ +DI L +IL LW +LKP G LL+ TC
Sbjct: 328 FDRILLDAPCSATGVIRRHPDIKWLRQASDISALVTLQKQILQALWTVLKPNGILLYATC 387
Query: 87 SLWFEESEEQAIIFSKNHKD---------SIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
S+ EE+ Q F N+ D ++ + Q LPT N DGF+Y+ +K
Sbjct: 388 SVLPEENALQIEQFLTNNVDAKLEPLPFTAVEGSVGYQFLPTENGG---DGFYYAKLRK 443
>gi|419072812|ref|ZP_13618394.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC3F]
gi|377934588|gb|EHU98416.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC3F]
Length = 454
Score = 92.8 bits (229), Expect = 5e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 341 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 400
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 401 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 454
>gi|425302148|ref|ZP_18692031.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
07798]
gi|408211315|gb|EKI35863.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
07798]
Length = 420
Score = 92.8 bits (229), Expect = 5e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 307 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 366
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 367 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 420
>gi|218706896|ref|YP_002414415.1| 16S rRNA methyltransferase B [Escherichia coli UMN026]
gi|293406886|ref|ZP_06650810.1| 16S rRNA methyltransferase B [Escherichia coli FVEC1412]
gi|298382627|ref|ZP_06992222.1| 16S rRNA methyltransferase B [Escherichia coli FVEC1302]
gi|300896636|ref|ZP_07115153.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 198-1]
gi|331664901|ref|ZP_08365802.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TA143]
gi|387608995|ref|YP_006097851.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
042]
gi|417588391|ref|ZP_12239154.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
STEC_C165-02]
gi|419933798|ref|ZP_14450948.1| 16S rRNA methyltransferase B [Escherichia coli 576-1]
gi|432355282|ref|ZP_19598549.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE2]
gi|432403657|ref|ZP_19646401.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE26]
gi|432427918|ref|ZP_19670401.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE181]
gi|432462622|ref|ZP_19704755.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE204]
gi|432477614|ref|ZP_19719603.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE208]
gi|432491062|ref|ZP_19732925.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE213]
gi|432519476|ref|ZP_19756655.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE228]
gi|432539634|ref|ZP_19776527.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE235]
gi|432633154|ref|ZP_19869074.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE80]
gi|432642844|ref|ZP_19878669.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE83]
gi|432667841|ref|ZP_19903413.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE116]
gi|432772035|ref|ZP_20006349.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE54]
gi|432841089|ref|ZP_20074548.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE140]
gi|432888620|ref|ZP_20102333.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE158]
gi|432914859|ref|ZP_20120186.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE190]
gi|433020419|ref|ZP_20208574.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE105]
gi|433054912|ref|ZP_20242078.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE122]
gi|433069603|ref|ZP_20256376.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE128]
gi|433160389|ref|ZP_20345215.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE177]
gi|433180109|ref|ZP_20364494.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE82]
gi|433205005|ref|ZP_20388755.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE95]
gi|254766859|sp|B7NDR0.1|RSMB_ECOLU RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|218433993|emb|CAR14910.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli
UMN026]
gi|284923295|emb|CBG36389.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
042]
gi|291425697|gb|EFE98731.1| 16S rRNA methyltransferase B [Escherichia coli FVEC1412]
gi|298276463|gb|EFI17981.1| 16S rRNA methyltransferase B [Escherichia coli FVEC1302]
gi|300359513|gb|EFJ75383.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 198-1]
gi|331057411|gb|EGI29397.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TA143]
gi|345332464|gb|EGW64920.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
STEC_C165-02]
gi|388410164|gb|EIL70415.1| 16S rRNA methyltransferase B [Escherichia coli 576-1]
gi|430872753|gb|ELB96333.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE2]
gi|430923070|gb|ELC43807.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE26]
gi|430951756|gb|ELC70964.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE181]
gi|430985885|gb|ELD02468.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE204]
gi|431002221|gb|ELD17734.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE208]
gi|431018210|gb|ELD31646.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE213]
gi|431047728|gb|ELD57713.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE228]
gi|431067050|gb|ELD75659.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE235]
gi|431167337|gb|ELE67602.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE80]
gi|431177610|gb|ELE77524.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE83]
gi|431197672|gb|ELE96499.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE116]
gi|431324026|gb|ELG11482.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE54]
gi|431386321|gb|ELG70277.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE140]
gi|431413973|gb|ELG96722.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE158]
gi|431435927|gb|ELH17534.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE190]
gi|431528056|gb|ELI04767.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE105]
gi|431567243|gb|ELI40244.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE122]
gi|431580168|gb|ELI52734.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE128]
gi|431674719|gb|ELJ40875.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE177]
gi|431698413|gb|ELJ63457.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE82]
gi|431716928|gb|ELJ81032.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE95]
Length = 429
Score = 92.8 bits (229), Expect = 5e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLIYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|444334814|ref|ZP_21150261.1| LOW QUALITY PROTEIN: methionyl-tRNA formyltransferase
[Aggregatibacter actinomycetemcomitans serotype a str.
A160]
gi|443549860|gb|ELT58441.1| LOW QUALITY PROTEIN: methionyl-tRNA formyltransferase
[Aggregatibacter actinomycetemcomitans serotype a str.
A160]
Length = 769
Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 50/123 (40%), Positives = 70/123 (56%), Gaps = 11/123 (8%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GVVRR+PDI WLR++ DI+ L + +IL LW LKP G LL+ TC
Sbjct: 646 FDRILLDAPCSATGVVRRHPDIKWLRKEADIEPLVELQEQILQALWPYLKPSGVLLYATC 705
Query: 87 SLWFEESEEQAIIFSKNHKDS--IRLNSPGQLLPT---------VNKKQDYDGFFYSLFQ 135
S+ EE+ Q F + D+ LN P ++L + + DGF+Y+
Sbjct: 706 SVLAEENARQIERFLQRTPDAQLAVLNLPEEVLARNQSAVGFQFIPQTDGGDGFYYAKLV 765
Query: 136 KRK 138
KR+
Sbjct: 766 KRE 768
>gi|387121464|ref|YP_006287347.1| LOW QUALITY PROTEIN: methionyl-tRNA formyltransferase
[Aggregatibacter actinomycetemcomitans D7S-1]
gi|385875956|gb|AFI87515.1| LOW QUALITY PROTEIN: methionyl-tRNA formyltransferase
[Aggregatibacter actinomycetemcomitans D7S-1]
Length = 770
Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 50/123 (40%), Positives = 70/123 (56%), Gaps = 11/123 (8%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GVVRR+PDI WLR++ DI+ L + +IL LW LKP G LL+ TC
Sbjct: 647 FDRILLDAPCSATGVVRRHPDIKWLRKEADIEPLVELQEQILQALWPYLKPSGVLLYATC 706
Query: 87 SLWFEESEEQAIIFSKNHKDS--IRLNSPGQLLPT---------VNKKQDYDGFFYSLFQ 135
S+ EE+ Q F + D+ LN P ++L + + DGF+Y+
Sbjct: 707 SVLAEENARQIERFLQRTPDAQLAVLNLPEEVLARNQSAVGFQFIPQTDGGDGFYYAKLV 766
Query: 136 KRK 138
KR+
Sbjct: 767 KRE 769
>gi|15603426|ref|NP_246500.1| hypothetical protein PM1561 [Pasteurella multocida subsp. multocida
str. Pm70]
gi|46397017|sp|Q9CKP7.1|RSMB_PASMU RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|12721953|gb|AAK03645.1| Sun [Pasteurella multocida subsp. multocida str. Pm70]
Length = 446
Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 50/119 (42%), Positives = 68/119 (57%), Gaps = 12/119 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR+ +DI L +IL LW +LKP G LL+ TC
Sbjct: 328 FDRILLDAPCSATGVIRRHPDIKWLRQASDISALVALQKQILQALWTVLKPNGILLYATC 387
Query: 87 SLWFEESEEQAIIFSKNHKD---------SIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
S+ EE+ Q F N+ D ++ + Q LPT N DGF+Y+ +K
Sbjct: 388 SVLPEENALQIEQFLTNNVDAKLEPLPFTAVEGSVGYQFLPTENGG---DGFYYAKLRK 443
>gi|421264314|ref|ZP_15715306.1| 16S rRNA methyltransferase B [Pasteurella multocida subsp.
multocida str. P52VAC]
gi|401688394|gb|EJS83999.1| 16S rRNA methyltransferase B [Pasteurella multocida subsp.
multocida str. P52VAC]
Length = 446
Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 50/119 (42%), Positives = 68/119 (57%), Gaps = 12/119 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR+ +DI L +IL LW +LKP G LL+ TC
Sbjct: 328 FDRILLDAPCSATGVIRRHPDIKWLRQASDISALVALQKQILQALWTVLKPNGILLYATC 387
Query: 87 SLWFEESEEQAIIFSKNHKD---------SIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
S+ EE+ Q F N+ D ++ + Q LPT N DGF+Y+ +K
Sbjct: 388 SVLPEENALQIEQFLTNNVDAKLEPLPFTAVEGSVGYQFLPTENGG---DGFYYAKLRK 443
>gi|419291479|ref|ZP_13833564.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC11A]
gi|378126204|gb|EHW87600.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC11A]
Length = 454
Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 341 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 400
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 401 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 454
>gi|333985162|ref|YP_004514372.1| sun protein [Methylomonas methanica MC09]
gi|333809203|gb|AEG01873.1| sun protein [Methylomonas methanica MC09]
Length = 431
Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 53/160 (33%), Positives = 86/160 (53%), Gaps = 24/160 (15%)
Query: 1 MIAGEIESSDINKKTNNRFRFY-----------------KNKYFDRILADLPCTGSGVVR 43
++A +I+++ + + T+N R + + + F+RIL D PC+G GV+R
Sbjct: 270 LLALDIDANRLQRVTDNLQRLHLRADTLAADAADPQNWAEGRQFERILLDAPCSGFGVIR 329
Query: 44 RNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKN 103
R+PDI LRR++DI L + KIL+ W +L PGG LL+ TCS+ +E+E Q F
Sbjct: 330 RHPDIKLLRRESDIAALQELQAKILDAAWDLLVPGGILLYATCSVLKQENELQIADFLDR 389
Query: 104 HKDSIRLN-SPGQLLPTVNKKQ------DYDGFFYSLFQK 136
H D++ L+ G + + +Q DGF+Y+ K
Sbjct: 390 HSDAMELSIDAGWGMARPHGRQILTGDCQMDGFYYAKLGK 429
>gi|417684275|ref|ZP_12333616.1| ribosomal RNA small subunit methyltransferase B [Shigella boydii
3594-74]
gi|332090533|gb|EGI95631.1| ribosomal RNA small subunit methyltransferase B [Shigella boydii
3594-74]
Length = 454
Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 341 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 400
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 401 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 454
>gi|406946283|gb|EKD77540.1| hypothetical protein ACD_42C00303G0007 [uncultured bacterium]
Length = 434
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 69/125 (55%), Gaps = 13/125 (10%)
Query: 22 YKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKL 81
+ FDRIL D PC+ GV+RR+PDI LR+K DIK LS+ +L +W +LKP GKL
Sbjct: 310 FSENVFDRILLDAPCSAIGVIRRHPDIKILRKKTDIKNLSEQQLIMLKTIWPLLKPNGKL 369
Query: 82 LFVTCSLWFEESEE----------QAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFY 131
++ TCS+ E+E+ A I N+ I L Q+L + DGFFY
Sbjct: 370 IYTTCSILPNENEQVIQLFLAAQPNAKIIPINNNWGINLQYGQQVL---TGDHNRDGFFY 426
Query: 132 SLFQK 136
S+ QK
Sbjct: 427 SILQK 431
>gi|331649085|ref|ZP_08350171.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
M605]
gi|417663860|ref|ZP_12313440.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
AA86]
gi|330909333|gb|EGH37847.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
AA86]
gi|331041583|gb|EGI13727.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
M605]
Length = 429
Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWSHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|432555372|ref|ZP_19792090.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE47]
gi|431081016|gb|ELD87795.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE47]
Length = 429
Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWSHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|417619892|ref|ZP_12270298.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
G58-1]
gi|419155755|ref|ZP_13700311.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC6C]
gi|345371983|gb|EGX03951.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
G58-1]
gi|377993432|gb|EHV56564.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC6C]
Length = 420
Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 307 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATC 366
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 367 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 420
>gi|417854378|ref|ZP_12499684.1| 16S rRNA methyltransferase B [Pasteurella multocida subsp.
multocida str. Anand1_goat]
gi|338218068|gb|EGP03876.1| 16S rRNA methyltransferase B [Pasteurella multocida subsp.
multocida str. Anand1_goat]
Length = 446
Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 51/119 (42%), Positives = 67/119 (56%), Gaps = 12/119 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR+ +DI L +IL LW +LKP G LL+ TC
Sbjct: 328 FDRILLDAPCSATGVIRRHPDIKWLRQASDISALVTLQKQILQALWTVLKPNGILLYATC 387
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSP---------GQLLPTVNKKQDYDGFFYSLFQK 136
S+ EE+ Q F N+ D+ P Q LPT N DGF+Y+ +K
Sbjct: 388 SVLPEENALQIEQFLTNNVDAKLEPLPFTVVEGAVGYQFLPTENGG---DGFYYAKLRK 443
>gi|416051219|ref|ZP_11577317.1| SUN protein [Aggregatibacter actinomycetemcomitans serotype e str.
SC1083]
gi|347993237|gb|EGY34611.1| SUN protein [Aggregatibacter actinomycetemcomitans serotype e str.
SC1083]
Length = 451
Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 49/123 (39%), Positives = 69/123 (56%), Gaps = 11/123 (8%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR++ DI+ L + +IL LW LKP G LL+ TC
Sbjct: 328 FDRILLDAPCSATGVIRRHPDIKWLRKEADIQPLVELQEQILQALWTYLKPNGVLLYATC 387
Query: 87 SLWFEESEEQAIIFSKNHKDS--IRLNSPGQLLPTVNKKQDY---------DGFFYSLFQ 135
S+ EE+ Q F + D+ LN P ++L + DGF+Y+
Sbjct: 388 SVLAEENARQIERFLQRTPDAQLAALNLPEEVLARNQSAVGFQFIPQIDGGDGFYYAKLV 447
Query: 136 KRK 138
KR+
Sbjct: 448 KRE 450
>gi|415756700|ref|ZP_11481140.1| methionyl-tRNA formyltransferase [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|416035793|ref|ZP_11573563.1| LOW QUALITY PROTEIN: methionyl-tRNA formyltransferase
[Aggregatibacter actinomycetemcomitans serotype a str.
H5P1]
gi|416049156|ref|ZP_11576475.1| LOW QUALITY PROTEIN: methionyl-tRNA formyltransferase
[Aggregatibacter actinomycetemcomitans serotype d str.
I63B]
gi|429733358|ref|ZP_19267598.1| ribosomal RNA small subunit methyltransferase B [Aggregatibacter
actinomycetemcomitans Y4]
gi|347991972|gb|EGY33410.1| LOW QUALITY PROTEIN: methionyl-tRNA formyltransferase
[Aggregatibacter actinomycetemcomitans serotype d str.
I63B]
gi|347997201|gb|EGY38225.1| LOW QUALITY PROTEIN: methionyl-tRNA formyltransferase
[Aggregatibacter actinomycetemcomitans serotype a str.
H5P1]
gi|348655722|gb|EGY71162.1| methionyl-tRNA formyltransferase [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|429154960|gb|EKX97665.1| ribosomal RNA small subunit methyltransferase B [Aggregatibacter
actinomycetemcomitans Y4]
Length = 451
Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 50/123 (40%), Positives = 70/123 (56%), Gaps = 11/123 (8%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GVVRR+PDI WLR++ DI+ L + +IL LW LKP G LL+ TC
Sbjct: 328 FDRILLDAPCSATGVVRRHPDIKWLRKEADIEPLVELQEQILQALWPYLKPSGVLLYATC 387
Query: 87 SLWFEESEEQAIIFSKNHKDS--IRLNSPGQLLPT---------VNKKQDYDGFFYSLFQ 135
S+ EE+ Q F + D+ LN P ++L + + DGF+Y+
Sbjct: 388 SVLAEENARQIERFLQRTPDAQLAVLNLPEEVLARNQSAVGFQFIPQTDGGDGFYYAKLV 447
Query: 136 KRK 138
KR+
Sbjct: 448 KRE 450
>gi|378775411|ref|YP_005177654.1| ribosomal RNA small subunit methyltransferase B [Pasteurella
multocida 36950]
gi|356597959|gb|AET16685.1| ribosomal RNA small subunit methyltransferase B [Pasteurella
multocida 36950]
Length = 446
Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 51/119 (42%), Positives = 67/119 (56%), Gaps = 12/119 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR+ +DI L +IL LW +LKP G LL+ TC
Sbjct: 328 FDRILLDAPCSATGVIRRHPDIKWLRQASDISALVALQKQILQALWTVLKPNGILLYATC 387
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSP---------GQLLPTVNKKQDYDGFFYSLFQK 136
S+ EE+ Q F N+ D+ P Q LPT N DGF+Y+ +K
Sbjct: 388 SVLPEENALQIEQFLTNNVDAKLEPLPFTVVEGAVGYQFLPTENGG---DGFYYAKLRK 443
>gi|419912482|ref|ZP_14430936.1| 16S rRNA methyltransferase B [Escherichia coli KD1]
gi|388391664|gb|EIL53116.1| 16S rRNA methyltransferase B [Escherichia coli KD1]
Length = 429
Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWSHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|416068281|ref|ZP_11582716.1| LOW QUALITY PROTEIN: methionyl-tRNA formyltransferase
[Aggregatibacter actinomycetemcomitans serotype f str.
D18P1]
gi|348001179|gb|EGY41933.1| LOW QUALITY PROTEIN: methionyl-tRNA formyltransferase
[Aggregatibacter actinomycetemcomitans serotype f str.
D18P1]
Length = 451
Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 50/123 (40%), Positives = 70/123 (56%), Gaps = 11/123 (8%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GVVRR+PDI WLR++ DI+ L + +IL LW LKP G LL+ TC
Sbjct: 328 FDRILLDAPCSATGVVRRHPDIKWLRKEADIEPLVELQEQILQALWPYLKPSGVLLYATC 387
Query: 87 SLWFEESEEQAIIFSKNHKDS--IRLNSPGQLLPT---------VNKKQDYDGFFYSLFQ 135
S+ EE+ Q F + D+ LN P ++L + + DGF+Y+
Sbjct: 388 SVLAEENARQIERFLQRTPDAQLAVLNLPEEVLARNQSAVGFQFIPQTDGGDGFYYAKLV 447
Query: 136 KRK 138
KR+
Sbjct: 448 KRE 450
>gi|416899677|ref|ZP_11929083.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
STEC_7v]
gi|417117126|ref|ZP_11967987.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
1.2741]
gi|422801226|ref|ZP_16849722.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
M863]
gi|323966250|gb|EGB61685.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
M863]
gi|327250937|gb|EGE62630.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
STEC_7v]
gi|386139670|gb|EIG80825.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
1.2741]
Length = 429
Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWSHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|218691575|ref|YP_002399787.1| 16S rRNA methyltransferase B [Escherichia coli ED1a]
gi|254766857|sp|B7N0S9.1|RSMB_ECO81 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|218429139|emb|CAR09947.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli
ED1a]
Length = 429
Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWSHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|110643527|ref|YP_671257.1| 16S rRNA methyltransferase GidB [Escherichia coli 536]
gi|123343554|sp|Q0TCH3.1|RSMB_ECOL5 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|110345119|gb|ABG71356.1| SUN protein [Escherichia coli 536]
Length = 429
Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWSHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|191174468|ref|ZP_03035969.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
F11]
gi|222157992|ref|YP_002558131.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
LF82]
gi|300973968|ref|ZP_07172375.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 200-1]
gi|306816369|ref|ZP_07450507.1| 16S rRNA methyltransferase B [Escherichia coli NC101]
gi|387618578|ref|YP_006121600.1| 16S rRNA methyltransferase B [Escherichia coli O83:H1 str. NRG
857C]
gi|419702115|ref|ZP_14229711.1| 16S rRNA methyltransferase B [Escherichia coli SCI-07]
gi|422373691|ref|ZP_16453990.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 60-1]
gi|432383188|ref|ZP_19626113.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE15]
gi|432472635|ref|ZP_19714672.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE206]
gi|432515679|ref|ZP_19752894.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE224]
gi|432613294|ref|ZP_19849451.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE72]
gi|432647961|ref|ZP_19883746.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE86]
gi|432657524|ref|ZP_19893220.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE93]
gi|432700805|ref|ZP_19935949.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE169]
gi|432715135|ref|ZP_19950162.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE8]
gi|432747267|ref|ZP_19981928.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE43]
gi|432803470|ref|ZP_20037422.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE84]
gi|432906993|ref|ZP_20115469.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE194]
gi|432940098|ref|ZP_20138012.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE183]
gi|432973564|ref|ZP_20162407.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE207]
gi|432987136|ref|ZP_20175848.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE215]
gi|433040287|ref|ZP_20227878.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE113]
gi|433079474|ref|ZP_20265993.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE131]
gi|433084214|ref|ZP_20270661.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE133]
gi|433102874|ref|ZP_20288946.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE145]
gi|433145892|ref|ZP_20331025.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE168]
gi|433190093|ref|ZP_20374181.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE88]
gi|433200032|ref|ZP_20383919.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE94]
gi|190905276|gb|EDV64914.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
F11]
gi|222034997|emb|CAP77740.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
LF82]
gi|300308978|gb|EFJ63498.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 200-1]
gi|305850765|gb|EFM51222.1| 16S rRNA methyltransferase B [Escherichia coli NC101]
gi|312947839|gb|ADR28666.1| 16S rRNA methyltransferase B [Escherichia coli O83:H1 str. NRG
857C]
gi|324014965|gb|EGB84184.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 60-1]
gi|380346686|gb|EIA34978.1| 16S rRNA methyltransferase B [Escherichia coli SCI-07]
gi|430903573|gb|ELC25309.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE15]
gi|430995626|gb|ELD11916.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE206]
gi|431038374|gb|ELD49270.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE224]
gi|431146316|gb|ELE47752.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE72]
gi|431177934|gb|ELE77847.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE86]
gi|431187635|gb|ELE87134.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE93]
gi|431239916|gb|ELF34378.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE169]
gi|431253066|gb|ELF46578.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE8]
gi|431289167|gb|ELF79908.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE43]
gi|431346009|gb|ELG32922.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE84]
gi|431427959|gb|ELH09901.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE194]
gi|431459992|gb|ELH40281.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE183]
gi|431478911|gb|ELH58654.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE207]
gi|431494381|gb|ELH73969.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE215]
gi|431549194|gb|ELI23281.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE113]
gi|431594311|gb|ELI64593.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE131]
gi|431598485|gb|ELI68277.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE133]
gi|431616671|gb|ELI85696.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE145]
gi|431658768|gb|ELJ25678.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE168]
gi|431702994|gb|ELJ67686.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE88]
gi|431718323|gb|ELJ82402.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE94]
Length = 429
Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWSHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|432389042|ref|ZP_19631922.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE16]
gi|430904512|gb|ELC26221.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE16]
Length = 429
Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWSHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|26249873|ref|NP_755913.1| 16S rRNA methyltransferase B [Escherichia coli CFT073]
gi|227883420|ref|ZP_04001225.1| 16S rRNA methyltransferase B [Escherichia coli 83972]
gi|300979825|ref|ZP_07174727.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 45-1]
gi|301046059|ref|ZP_07193238.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 185-1]
gi|386631168|ref|YP_006150888.1| 16S rRNA methyltransferase B [Escherichia coli str. 'clone D i2']
gi|386636088|ref|YP_006155807.1| 16S rRNA methyltransferase B [Escherichia coli str. 'clone D i14']
gi|386640884|ref|YP_006107682.1| 16S rRNA m5C967 methyltransferase [Escherichia coli ABU 83972]
gi|422364951|ref|ZP_16445460.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 153-1]
gi|432413510|ref|ZP_19656164.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE39]
gi|432433501|ref|ZP_19675925.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE187]
gi|432438097|ref|ZP_19680480.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE188]
gi|432442773|ref|ZP_19685108.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE189]
gi|432447893|ref|ZP_19690189.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE191]
gi|432458409|ref|ZP_19700585.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE201]
gi|432497402|ref|ZP_19739194.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE214]
gi|432506160|ref|ZP_19747879.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE220]
gi|432525615|ref|ZP_19762733.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE230]
gi|432570516|ref|ZP_19807022.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE53]
gi|432594482|ref|ZP_19830794.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE60]
gi|432609322|ref|ZP_19845503.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE67]
gi|432652881|ref|ZP_19888626.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE87]
gi|432785254|ref|ZP_20019431.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE63]
gi|432846368|ref|ZP_20079010.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE141]
gi|432975489|ref|ZP_20164323.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE209]
gi|432997049|ref|ZP_20185631.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE218]
gi|433001646|ref|ZP_20190164.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE223]
gi|433015588|ref|ZP_20203922.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE104]
gi|433025153|ref|ZP_20213126.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE106]
gi|433059769|ref|ZP_20246805.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE124]
gi|433088938|ref|ZP_20275303.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE137]
gi|433117164|ref|ZP_20302949.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE153]
gi|433126853|ref|ZP_20312399.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE160]
gi|433140917|ref|ZP_20326162.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE167]
gi|433150922|ref|ZP_20335922.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE174]
gi|433209411|ref|ZP_20393078.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE97]
gi|433214262|ref|ZP_20397844.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE99]
gi|433325903|ref|ZP_20402909.1| 16S rRNA methyltransferase B [Escherichia coli J96]
gi|442607475|ref|ZP_21022245.1| 16S rRNA (cytosine(967)-C(5))-methyltransferase [Escherichia coli
Nissle 1917]
gi|46396925|sp|Q8FD12.1|RSMB_ECOL6 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|26110301|gb|AAN82487.1|AE016767_247 SUN protein [Escherichia coli CFT073]
gi|227839564|gb|EEJ50030.1| 16S rRNA methyltransferase B [Escherichia coli 83972]
gi|300301944|gb|EFJ58329.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 185-1]
gi|300409431|gb|EFJ92969.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 45-1]
gi|307555376|gb|ADN48151.1| 16S rRNA m5C967 methyltransferase [Escherichia coli ABU 83972]
gi|315292336|gb|EFU51688.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 153-1]
gi|355422067|gb|AER86264.1| 16S rRNA methyltransferase B [Escherichia coli str. 'clone D i2']
gi|355426987|gb|AER91183.1| 16S rRNA methyltransferase B [Escherichia coli str. 'clone D i14']
gi|430933339|gb|ELC53745.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE39]
gi|430950676|gb|ELC69904.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE187]
gi|430960651|gb|ELC78702.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE188]
gi|430963816|gb|ELC81395.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE189]
gi|430970973|gb|ELC87995.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE191]
gi|430979867|gb|ELC96631.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE201]
gi|431020937|gb|ELD34266.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE214]
gi|431035508|gb|ELD46891.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE220]
gi|431048726|gb|ELD58694.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE230]
gi|431097589|gb|ELE02916.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE53]
gi|431125939|gb|ELE28293.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE60]
gi|431135633|gb|ELE37508.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE67]
gi|431187296|gb|ELE86797.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE87]
gi|431326333|gb|ELG13679.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE63]
gi|431392603|gb|ELG76174.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE141]
gi|431486303|gb|ELH65953.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE209]
gi|431502647|gb|ELH81532.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE218]
gi|431504628|gb|ELH83252.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE223]
gi|431527253|gb|ELI03975.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE104]
gi|431532318|gb|ELI08878.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE106]
gi|431566709|gb|ELI39729.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE124]
gi|431602388|gb|ELI71827.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE137]
gi|431631517|gb|ELI99824.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE153]
gi|431641422|gb|ELJ09161.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE160]
gi|431656978|gb|ELJ23950.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE167]
gi|431667788|gb|ELJ34365.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE174]
gi|431728547|gb|ELJ92225.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE97]
gi|431732557|gb|ELJ96009.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE99]
gi|432345917|gb|ELL40409.1| 16S rRNA methyltransferase B [Escherichia coli J96]
gi|441711332|emb|CCQ08222.1| 16S rRNA (cytosine(967)-C(5))-methyltransferase [Escherichia coli
Nissle 1917]
Length = 429
Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWSHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|260857409|ref|YP_003231300.1| 16S rRNA methyltransferase GidB [Escherichia coli O26:H11 str.
11368]
gi|260870031|ref|YP_003236433.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli
O111:H- str. 11128]
gi|415787653|ref|ZP_11494200.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EPECa14]
gi|415820327|ref|ZP_11509516.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
OK1180]
gi|417197418|ref|ZP_12016352.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
4.0522]
gi|417211135|ref|ZP_12021552.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
JB1-95]
gi|417296896|ref|ZP_12084143.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
900105 (10e)]
gi|417593691|ref|ZP_12244380.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
2534-86]
gi|419205403|ref|ZP_13748566.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC8B]
gi|419211749|ref|ZP_13754816.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC8C]
gi|419217689|ref|ZP_13760683.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC8D]
gi|419223438|ref|ZP_13766350.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC8E]
gi|419228911|ref|ZP_13771752.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC9A]
gi|419234501|ref|ZP_13777269.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC9B]
gi|419241063|ref|ZP_13783753.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC9C]
gi|419245357|ref|ZP_13787990.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC9D]
gi|419251218|ref|ZP_13793786.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC9E]
gi|419256910|ref|ZP_13799410.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC10A]
gi|419263893|ref|ZP_13806295.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC10B]
gi|419269219|ref|ZP_13811562.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC10C]
gi|419275369|ref|ZP_13817652.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC10D]
gi|419286206|ref|ZP_13828369.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC10F]
gi|419878378|ref|ZP_14399850.1| 16S rRNA methyltransferase B [Escherichia coli O111:H11 str.
CVM9534]
gi|419879808|ref|ZP_14401232.1| 16S rRNA methyltransferase B [Escherichia coli O111:H11 str.
CVM9545]
gi|419891905|ref|ZP_14411945.1| 16S rRNA methyltransferase B [Escherichia coli O111:H8 str.
CVM9570]
gi|419897527|ref|ZP_14417111.1| 16S rRNA methyltransferase B [Escherichia coli O111:H8 str.
CVM9574]
gi|419904396|ref|ZP_14423396.1| 16S rRNA methyltransferase B [Escherichia coli O26:H11 str.
CVM9942]
gi|419906935|ref|ZP_14425792.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli
O26:H11 str. CVM10026]
gi|420090406|ref|ZP_14602175.1| 16S rRNA methyltransferase B [Escherichia coli O111:H8 str.
CVM9602]
gi|420096500|ref|ZP_14607869.1| 16S rRNA methyltransferase B [Escherichia coli O111:H8 str.
CVM9634]
gi|420104543|ref|ZP_14615234.1| 16S rRNA methyltransferase B [Escherichia coli O111:H11 str.
CVM9455]
gi|420111238|ref|ZP_14621082.1| 16S rRNA methyltransferase B [Escherichia coli O111:H11 str.
CVM9553]
gi|420117570|ref|ZP_14626926.1| hypothetical protein ECO10021_28887 [Escherichia coli O26:H11 str.
CVM10021]
gi|420123471|ref|ZP_14632361.1| 16S rRNA methyltransferase B [Escherichia coli O26:H11 str.
CVM10030]
gi|420126553|ref|ZP_14635288.1| 16S rRNA methyltransferase B [Escherichia coli O26:H11 str.
CVM10224]
gi|420135673|ref|ZP_14643753.1| 16S rRNA methyltransferase B [Escherichia coli O26:H11 str.
CVM9952]
gi|424748552|ref|ZP_18176692.1| 16S rRNA methyltransferase B [Escherichia coli O26:H11 str.
CFSAN001629]
gi|424766951|ref|ZP_18194288.1| 16S rRNA methyltransferase B [Escherichia coli O111:H11 str.
CFSAN001630]
gi|424769953|ref|ZP_18197169.1| 16S rRNA methyltransferase B [Escherichia coli O111:H8 str.
CFSAN001632]
gi|425381568|ref|ZP_18765565.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1865]
gi|257756058|dbj|BAI27560.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli
O26:H11 str. 11368]
gi|257766387|dbj|BAI37882.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli
O111:H- str. 11128]
gi|323154126|gb|EFZ40329.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EPECa14]
gi|323179175|gb|EFZ64749.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
OK1180]
gi|345333278|gb|EGW65729.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
2534-86]
gi|378044857|gb|EHW07267.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC8B]
gi|378049982|gb|EHW12316.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC8C]
gi|378058536|gb|EHW20744.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC8D]
gi|378061879|gb|EHW24058.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC8E]
gi|378069749|gb|EHW31834.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC9A]
gi|378074636|gb|EHW36670.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC9B]
gi|378076280|gb|EHW38288.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC9C]
gi|378087342|gb|EHW49202.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC9D]
gi|378091044|gb|EHW52878.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC9E]
gi|378097468|gb|EHW59220.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC10A]
gi|378101112|gb|EHW62801.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC10B]
gi|378107608|gb|EHW69227.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC10C]
gi|378112470|gb|EHW74049.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC10D]
gi|378126836|gb|EHW88229.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC10F]
gi|386188723|gb|EIH77512.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
4.0522]
gi|386195739|gb|EIH89974.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
JB1-95]
gi|386260340|gb|EIJ15814.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
900105 (10e)]
gi|388335446|gb|EIL02011.1| 16S rRNA methyltransferase B [Escherichia coli O111:H11 str.
CVM9534]
gi|388348761|gb|EIL14332.1| 16S rRNA methyltransferase B [Escherichia coli O111:H8 str.
CVM9570]
gi|388355171|gb|EIL20030.1| 16S rRNA methyltransferase B [Escherichia coli O111:H8 str.
CVM9574]
gi|388367677|gb|EIL31343.1| 16S rRNA methyltransferase B [Escherichia coli O26:H11 str.
CVM9942]
gi|388370641|gb|EIL34158.1| 16S rRNA methyltransferase B [Escherichia coli O111:H11 str.
CVM9545]
gi|388377855|gb|EIL40635.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli
O26:H11 str. CVM10026]
gi|394385815|gb|EJE63331.1| 16S rRNA methyltransferase B [Escherichia coli O111:H8 str.
CVM9602]
gi|394388311|gb|EJE65593.1| 16S rRNA methyltransferase B [Escherichia coli O111:H8 str.
CVM9634]
gi|394392136|gb|EJE68931.1| 16S rRNA methyltransferase B [Escherichia coli O26:H11 str.
CVM10224]
gi|394398834|gb|EJE74971.1| 16S rRNA methyltransferase B [Escherichia coli O111:H11 str.
CVM9553]
gi|394401963|gb|EJE77727.1| hypothetical protein ECO10021_28887 [Escherichia coli O26:H11 str.
CVM10021]
gi|394403981|gb|EJE79469.1| 16S rRNA methyltransferase B [Escherichia coli O111:H11 str.
CVM9455]
gi|394417011|gb|EJE90769.1| 16S rRNA methyltransferase B [Escherichia coli O26:H11 str.
CVM10030]
gi|394419731|gb|EJE93313.1| 16S rRNA methyltransferase B [Escherichia coli O26:H11 str.
CVM9952]
gi|408294310|gb|EKJ12710.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1865]
gi|421933188|gb|EKT90981.1| 16S rRNA methyltransferase B [Escherichia coli O111:H11 str.
CFSAN001630]
gi|421943106|gb|EKU00398.1| 16S rRNA methyltransferase B [Escherichia coli O111:H8 str.
CFSAN001632]
gi|421944159|gb|EKU01420.1| 16S rRNA methyltransferase B [Escherichia coli O26:H11 str.
CFSAN001629]
Length = 429
Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGT---EEGDGFFYAKLIKK 429
>gi|383180462|ref|YP_005458467.1| 16S rRNA methyltransferase B [Shigella sonnei 53G]
gi|418268755|ref|ZP_12887424.1| ribosomal RNA small subunit methyltransferase B [Shigella sonnei
str. Moseley]
gi|397896431|gb|EJL12850.1| ribosomal RNA small subunit methyltransferase B [Shigella sonnei
str. Moseley]
Length = 429
Score = 92.4 bits (228), Expect = 6e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|331684931|ref|ZP_08385517.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
H299]
gi|450193529|ref|ZP_21892036.1| 16S rRNA methyltransferase B [Escherichia coli SEPT362]
gi|331077302|gb|EGI48514.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
H299]
gi|449317422|gb|EMD07511.1| 16S rRNA methyltransferase B [Escherichia coli SEPT362]
Length = 429
Score = 92.4 bits (228), Expect = 6e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|422379714|ref|ZP_16459900.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 57-2]
gi|432734039|ref|ZP_19968863.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE45]
gi|432761124|ref|ZP_19995614.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE46]
gi|324009054|gb|EGB78273.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 57-2]
gi|431271932|gb|ELF63050.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE45]
gi|431306431|gb|ELF94744.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE46]
Length = 429
Score = 92.4 bits (228), Expect = 6e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWSHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTTDAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|418464035|ref|ZP_13034977.1| 16S rRNA methyltransferase B [Aggregatibacter actinomycetemcomitans
RhAA1]
gi|359757376|gb|EHK91530.1| 16S rRNA methyltransferase B [Aggregatibacter actinomycetemcomitans
RhAA1]
Length = 451
Score = 92.4 bits (228), Expect = 6e-17, Method: Composition-based stats.
Identities = 49/123 (39%), Positives = 69/123 (56%), Gaps = 11/123 (8%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR++ DI+ L + +IL LW LKP G LL+ TC
Sbjct: 328 FDRILLDAPCSATGVIRRHPDIKWLRKEADIEPLVELQEQILQALWTYLKPNGVLLYATC 387
Query: 87 SLWFEESEEQAIIFSKNHKDS--IRLNSPGQLLPTVNKKQDY---------DGFFYSLFQ 135
S+ EE+ Q F + D+ LN P ++L + DGF+Y+
Sbjct: 388 SVLAEENARQIERFLQRTPDAQLAALNLPEEVLARNQSAVGFQFIPQIDGGDGFYYAKLV 447
Query: 136 KRK 138
KR+
Sbjct: 448 KRE 450
>gi|432870774|ref|ZP_20091194.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE147]
gi|431408759|gb|ELG91941.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE147]
Length = 429
Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|387126151|ref|YP_006294756.1| ribosomal RNA small subunit methyltransferase B [Methylophaga sp.
JAM1]
gi|386273213|gb|AFI83111.1| Ribosomal RNA small subunit methyltransferase B [Methylophaga sp.
JAM1]
Length = 435
Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats.
Identities = 52/132 (39%), Positives = 80/132 (60%), Gaps = 13/132 (9%)
Query: 16 NNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKML 75
+N ++ + FDRIL D PCTGSGV+RR+PDI LR+ +DI +L++ +L+NLW +L
Sbjct: 307 SNPQNWWNGEQFDRILIDAPCTGSGVIRRHPDIKLLRKPHDIDQLAQQQQALLDNLWPLL 366
Query: 76 KPGGKLLFVTCSLWFEESEEQAIIFSKNH---KDSIRLNSPG-------QLLPTVNKKQD 125
KP G +++ TCS + +E+E Q F + K+ + + +P QLLP N D
Sbjct: 367 KPDGLMVYTTCSAFKQENELQIEAFLQRQPEAKEHVPVRAPARRVSFGYQLLPGDN---D 423
Query: 126 YDGFFYSLFQKR 137
DGF+Y+ + R
Sbjct: 424 LDGFYYACLRHR 435
>gi|432545019|ref|ZP_19781853.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE236]
gi|432550501|ref|ZP_19787260.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE237]
gi|432623643|ref|ZP_19859660.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE76]
gi|432720410|ref|ZP_19955374.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE9]
gi|432817050|ref|ZP_20050810.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE115]
gi|431071846|gb|ELD79603.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE236]
gi|431077403|gb|ELD84654.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE237]
gi|431156571|gb|ELE57238.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE76]
gi|431260445|gb|ELF52542.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE9]
gi|431361453|gb|ELG48034.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE115]
Length = 429
Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|425244944|ref|ZP_18638245.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MA6]
gi|408158135|gb|EKH86263.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MA6]
Length = 429
Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats.
Identities = 51/133 (38%), Positives = 78/133 (58%), Gaps = 11/133 (8%)
Query: 13 KKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNN 70
K+ + R+ ++ + FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+
Sbjct: 300 KQADGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDA 359
Query: 71 LWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQ 124
+W LK GG L++ TCS+ EE+ Q F + D+ + PG Q LP +
Sbjct: 360 IWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---E 416
Query: 125 DYDGFFYSLFQKR 137
+ DGFFY+ K+
Sbjct: 417 EGDGFFYAKLIKK 429
>gi|350560490|ref|ZP_08929330.1| sun protein [Thioalkalivibrio thiocyanoxidans ARh 4]
gi|349782758|gb|EGZ37041.1| sun protein [Thioalkalivibrio thiocyanoxidans ARh 4]
Length = 439
Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats.
Identities = 48/123 (39%), Positives = 73/123 (59%), Gaps = 7/123 (5%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FD IL D+PC+ SGV+RR+PDI LRR DI L+ ++L W++L+PGG+
Sbjct: 315 WWDGRPFDAILLDVPCSASGVIRRHPDIKLLRRAADIPALATRQRELLAQAWELLRPGGR 374
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDS--IRLNSPGQLLPTVNK-----KQDYDGFFYSL 133
LL+VTCSL EE+E + D+ + L PG + V + +D DGF+Y+L
Sbjct: 375 LLYVTCSLLAEENERVVGPWLAATPDAQPLPLAFPGGVERAVGRAVVLGTEDMDGFYYAL 434
Query: 134 FQK 136
+
Sbjct: 435 LGR 437
>gi|432767647|ref|ZP_20002040.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE50]
gi|432963804|ref|ZP_20153151.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE202]
gi|433064729|ref|ZP_20251639.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE125]
gi|431322066|gb|ELG09654.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE50]
gi|431470331|gb|ELH50253.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE202]
gi|431578775|gb|ELI51365.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE125]
Length = 429
Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|359787044|ref|ZP_09290115.1| Sun protein [Halomonas sp. GFAJ-1]
gi|359295694|gb|EHK59957.1| Sun protein [Halomonas sp. GFAJ-1]
Length = 444
Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats.
Identities = 51/145 (35%), Positives = 87/145 (60%), Gaps = 15/145 (10%)
Query: 2 IAGEIESSDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLS 61
+ E++ +D ++ ++ FD IL D PC+G+GV+RR+PDI LRRK DI++L+
Sbjct: 304 LTAELQHADATQQD-----WWSGTSFDAILLDAPCSGTGVIRRHPDIKTLRRKEDIRQLA 358
Query: 62 KYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQL---LP 118
K ++L+NLW +L+PGG LL+ TCS+ E+ +Q F D+ ++ +P + +P
Sbjct: 359 KLQQQLLDNLWPLLRPGGTLLYATCSVLPAENADQIDAFIARTPDA-KVTTPSDVAWGIP 417
Query: 119 TVNKKQ------DYDGFFYSLFQKR 137
+ +Q +DGFFY+ +K+
Sbjct: 418 SGEGRQLFPEQGSHDGFFYARLEKQ 442
>gi|444976632|ref|ZP_21293729.1| ribosomal RNA small subunit methyltransferase B, partial
[Escherichia coli 99.1805]
gi|444591455|gb|ELV66742.1| ribosomal RNA small subunit methyltransferase B, partial
[Escherichia coli 99.1805]
Length = 284
Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 78/133 (58%), Gaps = 11/133 (8%)
Query: 13 KKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNN 70
K+ + R+ ++ + FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+
Sbjct: 155 KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDA 214
Query: 71 LWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQ 124
+W LK GG L++ TCS+ EE+ Q F + D+ + PG Q LP +
Sbjct: 215 IWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---E 271
Query: 125 DYDGFFYSLFQKR 137
+ DGFFY+ K+
Sbjct: 272 EGDGFFYAKLIKK 284
>gi|433131836|ref|ZP_20317265.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE163]
gi|431643913|gb|ELJ11601.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE163]
Length = 429
Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPYLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGT---EEGDGFFYAKLIKK 429
>gi|74313807|ref|YP_312226.1| 16S rRNA methyltransferase GidB [Shigella sonnei Ss046]
gi|414578069|ref|ZP_11435241.1| ribosomal RNA small subunit methyltransferase B [Shigella sonnei
3233-85]
gi|419921289|ref|ZP_14439345.1| 16S rRNA methyltransferase B [Escherichia coli 541-15]
gi|420360638|ref|ZP_14861592.1| ribosomal RNA small subunit methyltransferase B [Shigella sonnei
3226-85]
gi|123759539|sp|Q3YWX1.1|RSMB_SHISS RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|73857284|gb|AAZ89991.1| conserved hypothetical protein [Shigella sonnei Ss046]
gi|388397899|gb|EIL58856.1| 16S rRNA methyltransferase B [Escherichia coli 541-15]
gi|391278405|gb|EIQ37112.1| ribosomal RNA small subunit methyltransferase B [Shigella sonnei
3226-85]
gi|391282217|gb|EIQ40853.1| ribosomal RNA small subunit methyltransferase B [Shigella sonnei
3233-85]
Length = 429
Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|218702051|ref|YP_002409680.1| 16S rRNA methyltransferase B [Escherichia coli IAI39]
gi|300935286|ref|ZP_07150297.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 21-1]
gi|386626092|ref|YP_006145820.1| 16S rRNA methyltransferase B [Escherichia coli O7:K1 str. CE10]
gi|432399235|ref|ZP_19642009.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE25]
gi|432408360|ref|ZP_19651063.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE28]
gi|432682020|ref|ZP_19917378.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE143]
gi|432729336|ref|ZP_19964210.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE18]
gi|432743023|ref|ZP_19977737.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE23]
gi|432890734|ref|ZP_20103589.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE165]
gi|432992387|ref|ZP_20181045.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE217]
gi|433112519|ref|ZP_20298374.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE150]
gi|254766856|sp|B7NLK8.1|RSMB_ECO7I RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|218372037|emb|CAR19897.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli
IAI39]
gi|300459489|gb|EFK22982.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 21-1]
gi|349739828|gb|AEQ14534.1| 16S rRNA methyltransferase B [Escherichia coli O7:K1 str. CE10]
gi|430913108|gb|ELC34238.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE25]
gi|430927231|gb|ELC47795.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE28]
gi|431217567|gb|ELF15133.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE143]
gi|431271153|gb|ELF62292.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE18]
gi|431281180|gb|ELF72083.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE23]
gi|431431028|gb|ELH12806.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE165]
gi|431491537|gb|ELH71141.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE217]
gi|431625768|gb|ELI94326.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE150]
Length = 429
Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|345301136|ref|YP_004830494.1| ribosomal RNA small subunit methyltransferase B [Enterobacter
asburiae LF7a]
gi|345095073|gb|AEN66709.1| Ribosomal RNA small subunit methyltransferase B [Enterobacter
asburiae LF7a]
Length = 420
Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats.
Identities = 48/112 (42%), Positives = 69/112 (61%), Gaps = 9/112 (8%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 307 FDRILLDAPCSATGVIRRHPDIKWLRRDRDINELAQLQAEILDAVWPHLKSGGTLVYATC 366
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYS 132
S+ EE+ +Q F K ++ + PG Q LP ++ DGFFY+
Sbjct: 367 SVLPEENCQQIAAFLKRTPNASLHGTGTPERPGLQNLPGA---EEGDGFFYA 415
>gi|421261029|ref|ZP_15712889.1| 16S rRNA methyltransferase B [Pasteurella multocida subsp.
multocida str. Anand1_cattle]
gi|401693118|gb|EJS87335.1| 16S rRNA methyltransferase B [Pasteurella multocida subsp.
multocida str. Anand1_cattle]
Length = 154
Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 68/119 (57%), Gaps = 12/119 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR+ +DI L +IL LW +LKP G LL+ TC
Sbjct: 36 FDRILLDAPCSATGVIRRHPDIKWLRQASDISALVALQKQILQALWTVLKPNGILLYATC 95
Query: 87 SLWFEESEEQAIIFSKNHKD---------SIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
S+ EE+ Q F N+ D ++ + Q LPT N DGF+Y+ +K
Sbjct: 96 SVLPEENALQIEQFLTNNVDAKLEPLPFTAVEGSVGYQFLPTENGG---DGFYYAKLRK 151
>gi|392952180|ref|ZP_10317735.1| hypothetical protein WQQ_18070 [Hydrocarboniphaga effusa AP103]
gi|391861142|gb|EIT71670.1| hypothetical protein WQQ_18070 [Hydrocarboniphaga effusa AP103]
Length = 432
Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 49/144 (34%), Positives = 82/144 (56%), Gaps = 11/144 (7%)
Query: 2 IAGEIESSDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLS 61
++ ++ ++D ++ ++ ++ + FDRIL D PC+GSGV+RR+PDI WLRR +DI + +
Sbjct: 289 LSADVRAADASRPSS----WWDEQPFDRILLDAPCSGSGVIRRHPDIRWLRRPDDIARFA 344
Query: 62 KYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS----IRLNSPGQ-- 115
+L LW +L PGG L++ TCS++ E E+ F D+ I N+ G+
Sbjct: 345 DRQKNLLTALWPLLAPGGVLVYATCSIFKGEGEDVVKQFLVRIPDAKQEVIDTNAWGESC 404
Query: 116 -LLPTVNKKQDYDGFFYSLFQKRK 138
L + +DGF+Y+ K K
Sbjct: 405 KLGRRIAPNGPFDGFYYAKLIKPK 428
>gi|432949483|ref|ZP_20144264.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE196]
gi|433044820|ref|ZP_20232306.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE117]
gi|431454030|gb|ELH34408.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE196]
gi|431553837|gb|ELI27759.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE117]
Length = 429
Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|432724753|ref|ZP_19959666.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE17]
gi|431261972|gb|ELF53962.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE17]
Length = 429
Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|422973942|ref|ZP_16976039.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TA124]
gi|371596153|gb|EHN84993.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TA124]
Length = 429
Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|432865344|ref|ZP_20088441.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE146]
gi|431402090|gb|ELG85403.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE146]
Length = 429
Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|15833408|ref|NP_312181.1| 16S rRNA methyltransferase GidB [Escherichia coli O157:H7 str.
Sakai]
gi|13363627|dbj|BAB37577.1| RNA methyltransferase [Escherichia coli O157:H7 str. Sakai]
Length = 429
Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|419806439|ref|ZP_14331546.1| sun protein [Escherichia coli AI27]
gi|384470596|gb|EIE54700.1| sun protein [Escherichia coli AI27]
Length = 429
Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|415810457|ref|ZP_11502824.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
LT-68]
gi|323173925|gb|EFZ59553.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
LT-68]
Length = 429
Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|416832659|ref|ZP_11899822.1| 16S rRNA methyltransferase B [Escherichia coli O157:H7 str. LSU-61]
gi|320666401|gb|EFX33384.1| 16S rRNA methyltransferase B [Escherichia coli O157:H7 str. LSU-61]
Length = 429
Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|417285305|ref|ZP_12072596.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TW07793]
gi|422371098|ref|ZP_16451481.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 16-3]
gi|432900553|ref|ZP_20110932.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE192]
gi|433030199|ref|ZP_20218049.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE109]
gi|315297154|gb|EFU56434.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 16-3]
gi|386250546|gb|EII96713.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TW07793]
gi|431423508|gb|ELH05634.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE192]
gi|431540947|gb|ELI16398.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE109]
Length = 429
Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|300903537|ref|ZP_07121459.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 84-1]
gi|301305498|ref|ZP_07211590.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 124-1]
gi|415862911|ref|ZP_11536272.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 85-1]
gi|419172120|ref|ZP_13715999.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC7A]
gi|419182682|ref|ZP_13726291.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC7C]
gi|419188301|ref|ZP_13731807.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC7D]
gi|419193429|ref|ZP_13736874.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC7E]
gi|420387529|ref|ZP_14886869.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EPECa12]
gi|427806481|ref|ZP_18973548.1| hypothetical protein BN16_39191 [Escherichia coli chi7122]
gi|427811071|ref|ZP_18978136.1| hypothetical protein BN17_32221 [Escherichia coli]
gi|433136524|ref|ZP_20321856.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE166]
gi|443619351|ref|YP_007383207.1| 16S rRNA methyltransferase B [Escherichia coli APEC O78]
gi|300404410|gb|EFJ87948.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 84-1]
gi|300839193|gb|EFK66953.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 124-1]
gi|315255872|gb|EFU35840.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 85-1]
gi|378012858|gb|EHV75785.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC7A]
gi|378021454|gb|EHV84156.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC7C]
gi|378025241|gb|EHV87885.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC7D]
gi|378035808|gb|EHV98360.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC7E]
gi|391302883|gb|EIQ60729.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EPECa12]
gi|412964663|emb|CCK48592.1| hypothetical protein BN16_39191 [Escherichia coli chi7122]
gi|412971250|emb|CCJ45905.1| hypothetical protein BN17_32221 [Escherichia coli]
gi|431654073|gb|ELJ21144.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE166]
gi|443423859|gb|AGC88763.1| 16S rRNA methyltransferase B [Escherichia coli APEC O78]
Length = 429
Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGT---EEGDGFFYAKLIKK 429
>gi|157157639|ref|YP_001464756.1| 16S rRNA methyltransferase GidB [Escherichia coli E24377A]
gi|193066472|ref|ZP_03047516.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
E22]
gi|193071559|ref|ZP_03052468.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
E110019]
gi|194430276|ref|ZP_03062771.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
B171]
gi|209920754|ref|YP_002294838.1| 16S rRNA methyltransferase B [Escherichia coli SE11]
gi|218555846|ref|YP_002388759.1| 16S rRNA methyltransferase B [Escherichia coli IAI1]
gi|218696981|ref|YP_002404648.1| 16S rRNA methyltransferase GidB [Escherichia coli 55989]
gi|260846086|ref|YP_003223864.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli
O103:H2 str. 12009]
gi|293453607|ref|ZP_06664026.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
B088]
gi|300815501|ref|ZP_07095726.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 107-1]
gi|300822908|ref|ZP_07103044.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 119-7]
gi|300918263|ref|ZP_07134867.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 115-1]
gi|300921903|ref|ZP_07138058.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 182-1]
gi|301325146|ref|ZP_07218678.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 78-1]
gi|307315133|ref|ZP_07594716.1| sun protein [Escherichia coli W]
gi|309794564|ref|ZP_07688986.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 145-7]
gi|331670118|ref|ZP_08370957.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TA271]
gi|331679357|ref|ZP_08380027.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
H591]
gi|332281843|ref|ZP_08394256.1| 16S rRNA m5C967 methyltransferase S-adenosyl-L-methionine-dependent
[Shigella sp. D9]
gi|378711272|ref|YP_005276165.1| sun protein [Escherichia coli KO11FL]
gi|386610663|ref|YP_006126149.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli W]
gi|386699758|ref|YP_006163595.1| 16S rRNA methyltransferase B [Escherichia coli KO11FL]
gi|386711181|ref|YP_006174902.1| 16S rRNA methyltransferase B [Escherichia coli W]
gi|407471251|ref|YP_006782306.1| 16S rRNA methyltransferase B [Escherichia coli O104:H4 str.
2009EL-2071]
gi|407480093|ref|YP_006777242.1| 16S rRNA methyltransferase B [Escherichia coli O104:H4 str.
2011C-3493]
gi|410480654|ref|YP_006768200.1| 16S rRNA methyltransferase B [Escherichia coli O104:H4 str.
2009EL-2050]
gi|415795752|ref|ZP_11497265.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
E128010]
gi|415830871|ref|ZP_11516669.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
OK1357]
gi|415879130|ref|ZP_11544590.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 79-10]
gi|417131662|ref|ZP_11976447.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
5.0588]
gi|417141412|ref|ZP_11984325.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
97.0259]
gi|417146886|ref|ZP_11987733.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
1.2264]
gi|417158019|ref|ZP_11995643.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
96.0497]
gi|417163237|ref|ZP_11998567.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
99.0741]
gi|417173882|ref|ZP_12003678.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
3.2608]
gi|417184240|ref|ZP_12009932.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
93.0624]
gi|417220955|ref|ZP_12024395.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
96.154]
gi|417228097|ref|ZP_12029855.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
5.0959]
gi|417249461|ref|ZP_12041245.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
4.0967]
gi|417267735|ref|ZP_12055096.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
3.3884]
gi|417309805|ref|ZP_12096634.1| Ribosomal RNA small subunit methyltransferase B [Escherichia coli
PCN033]
gi|417582896|ref|ZP_12233696.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
STEC_B2F1]
gi|417598683|ref|ZP_12249310.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
3030-1]
gi|417604162|ref|ZP_12254726.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
STEC_94C]
gi|417605413|ref|ZP_12255963.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
STEC_DG131-3]
gi|417668767|ref|ZP_12318307.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
STEC_O31]
gi|417806929|ref|ZP_12453861.1| 16S rRNA methyltransferase B [Escherichia coli O104:H4 str.
LB226692]
gi|417834675|ref|ZP_12481117.1| 16S rRNA methyltransferase B [Escherichia coli O104:H4 str.
01-09591]
gi|417866400|ref|ZP_12511441.1| rsmB [Escherichia coli O104:H4 str. C227-11]
gi|417868520|ref|ZP_12513536.1| rsmB [Escherichia coli O104:H4 str. C227-11]
gi|418040825|ref|ZP_12679058.1| sun protein [Escherichia coli W26]
gi|418942236|ref|ZP_13495524.1| 16S rRNA methyltransferase B [Escherichia coli O157:H43 str. T22]
gi|419296767|ref|ZP_13838804.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC11B]
gi|419302283|ref|ZP_13844275.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC11C]
gi|419308295|ref|ZP_13850188.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC11D]
gi|419313323|ref|ZP_13855181.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC11E]
gi|419318731|ref|ZP_13860529.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC12A]
gi|419324997|ref|ZP_13866684.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC12B]
gi|419330941|ref|ZP_13872537.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC12C]
gi|419336427|ref|ZP_13877944.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC12D]
gi|419341837|ref|ZP_13883292.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC12E]
gi|419371869|ref|ZP_13912978.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC14A]
gi|419393436|ref|ZP_13934237.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC15A]
gi|419398536|ref|ZP_13939298.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC15B]
gi|419403818|ref|ZP_13944537.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC15C]
gi|419408976|ref|ZP_13949661.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC15D]
gi|419414526|ref|ZP_13955162.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC15E]
gi|419872193|ref|ZP_14394234.1| 16S rRNA methyltransferase B [Escherichia coli O103:H2 str.
CVM9450]
gi|419949213|ref|ZP_14465459.1| 16S rRNA methyltransferase B [Escherichia coli CUMT8]
gi|420393397|ref|ZP_14892642.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EPEC C342-62]
gi|422354168|ref|ZP_16434911.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 117-3]
gi|422763833|ref|ZP_16817587.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
E1167]
gi|422778147|ref|ZP_16831798.1| ribosomal RNA small methyltransferase B [Escherichia coli H120]
gi|422960834|ref|ZP_16972027.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
H494]
gi|422989479|ref|ZP_16980251.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. C227-11]
gi|422996374|ref|ZP_16987137.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. C236-11]
gi|423001524|ref|ZP_16992277.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 09-7901]
gi|423005183|ref|ZP_16995928.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 04-8351]
gi|423011689|ref|ZP_17002421.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-3677]
gi|423020916|ref|ZP_17011623.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-4404]
gi|423026081|ref|ZP_17016776.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-4522]
gi|423031900|ref|ZP_17022586.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-4623]
gi|423034772|ref|ZP_17025450.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-4632 C1]
gi|423039900|ref|ZP_17030569.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-4632 C2]
gi|423046584|ref|ZP_17037243.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-4632 C3]
gi|423055121|ref|ZP_17043927.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-4632 C4]
gi|423057113|ref|ZP_17045912.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-4632 C5]
gi|423707575|ref|ZP_17681955.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
B799]
gi|425290426|ref|ZP_18681248.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
3006]
gi|425424165|ref|ZP_18805322.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
0.1288]
gi|429720945|ref|ZP_19255866.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. Ec11-9450]
gi|429772842|ref|ZP_19304860.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-02030]
gi|429778208|ref|ZP_19310176.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-02033-1]
gi|429786514|ref|ZP_19318407.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-02092]
gi|429787458|ref|ZP_19319348.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-02093]
gi|429793254|ref|ZP_19325100.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-02281]
gi|429799834|ref|ZP_19331627.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-02318]
gi|429803449|ref|ZP_19335207.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-02913]
gi|429808090|ref|ZP_19339810.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-03439]
gi|429813790|ref|ZP_19345466.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-04080]
gi|429819000|ref|ZP_19350632.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-03943]
gi|429905349|ref|ZP_19371325.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. Ec11-9990]
gi|429909486|ref|ZP_19375448.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. Ec11-9941]
gi|429915356|ref|ZP_19381302.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. Ec11-4984]
gi|429920403|ref|ZP_19386330.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. Ec11-5604]
gi|429926207|ref|ZP_19392118.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. Ec11-4986]
gi|429930142|ref|ZP_19396042.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. Ec11-4987]
gi|429936680|ref|ZP_19402565.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. Ec11-4988]
gi|429942362|ref|ZP_19408234.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. Ec11-5603]
gi|429945045|ref|ZP_19410905.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. Ec11-6006]
gi|429952600|ref|ZP_19418445.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. Ec12-0465]
gi|429955955|ref|ZP_19421785.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. Ec12-0466]
gi|432378463|ref|ZP_19621446.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE12]
gi|432482609|ref|ZP_19724559.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE210]
gi|432528142|ref|ZP_19765218.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE233]
gi|432535653|ref|ZP_19772612.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE234]
gi|432676405|ref|ZP_19911853.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE142]
gi|432751754|ref|ZP_19986333.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE29]
gi|432766682|ref|ZP_20001097.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE48]
gi|432794500|ref|ZP_20028581.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE78]
gi|432796016|ref|ZP_20030056.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE79]
gi|432807537|ref|ZP_20041451.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE91]
gi|432828913|ref|ZP_20062530.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE135]
gi|432836237|ref|ZP_20069769.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE136]
gi|432854693|ref|ZP_20082964.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE144]
gi|432930659|ref|ZP_20131067.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE184]
gi|432965059|ref|ZP_20153983.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE203]
gi|433093664|ref|ZP_20279920.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE138]
gi|433195323|ref|ZP_20379300.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE90]
gi|450222938|ref|ZP_21896997.1| 16S rRNA methyltransferase B [Escherichia coli O08]
gi|224493245|sp|A7ZSH7.1|RSMB_ECO24 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|254766855|sp|B7LHZ0.1|RSMB_ECO55 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|254766858|sp|B7M0Z4.1|RSMB_ECO8A RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|254766860|sp|B6I202.1|RSMB_ECOSE RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|157079669|gb|ABV19377.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
E24377A]
gi|192925853|gb|EDV80503.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
E22]
gi|192955147|gb|EDV85641.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
E110019]
gi|194411665|gb|EDX27992.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
B171]
gi|209914013|dbj|BAG79087.1| putative rRNA methylase [Escherichia coli SE11]
gi|218353713|emb|CAU99984.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli
55989]
gi|218362614|emb|CAR00240.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli
IAI1]
gi|257761233|dbj|BAI32730.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli
O103:H2 str. 12009]
gi|291321733|gb|EFE61164.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
B088]
gi|300414524|gb|EFJ97834.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 115-1]
gi|300421704|gb|EFK05015.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 182-1]
gi|300524674|gb|EFK45743.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 119-7]
gi|300532393|gb|EFK53455.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 107-1]
gi|300847978|gb|EFK75738.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 78-1]
gi|306905482|gb|EFN36017.1| sun protein [Escherichia coli W]
gi|308121614|gb|EFO58876.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 145-7]
gi|315062580|gb|ADT76907.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli W]
gi|323162967|gb|EFZ48802.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
E128010]
gi|323182767|gb|EFZ68168.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
OK1357]
gi|323376833|gb|ADX49101.1| sun protein [Escherichia coli KO11FL]
gi|323944291|gb|EGB40367.1| ribosomal RNA small methyltransferase B [Escherichia coli H120]
gi|324017855|gb|EGB87074.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 117-3]
gi|324116322|gb|EGC10242.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
E1167]
gi|331062180|gb|EGI34100.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TA271]
gi|331072529|gb|EGI43854.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
H591]
gi|332104195|gb|EGJ07541.1| 16S rRNA m5C967 methyltransferase S-adenosyl-L-methionine-dependent
[Shigella sp. D9]
gi|338768587|gb|EGP23378.1| Ribosomal RNA small subunit methyltransferase B [Escherichia coli
PCN033]
gi|340732819|gb|EGR61955.1| 16S rRNA methyltransferase B [Escherichia coli O104:H4 str.
01-09591]
gi|340738386|gb|EGR72635.1| 16S rRNA methyltransferase B [Escherichia coli O104:H4 str.
LB226692]
gi|341919689|gb|EGT69299.1| rsmB [Escherichia coli O104:H4 str. C227-11]
gi|341921807|gb|EGT71394.1| rsmB [Escherichia coli O104:H4 str. C227-11]
gi|342927009|gb|EGU95731.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 79-10]
gi|345334676|gb|EGW67117.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
STEC_B2F1]
gi|345347530|gb|EGW79834.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
STEC_94C]
gi|345349554|gb|EGW81835.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
3030-1]
gi|345367520|gb|EGW99561.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
STEC_DG131-3]
gi|354858614|gb|EHF19063.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. C236-11]
gi|354863068|gb|EHF23502.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. C227-11]
gi|354863958|gb|EHF24388.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 04-8351]
gi|354871103|gb|EHF31501.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 09-7901]
gi|354877641|gb|EHF37999.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-3677]
gi|354886542|gb|EHF46824.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-4404]
gi|354890434|gb|EHF50673.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-4522]
gi|354894755|gb|EHF54945.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-4623]
gi|354906560|gb|EHF66634.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-4632 C1]
gi|354909203|gb|EHF69236.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-4632 C2]
gi|354911188|gb|EHF71193.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-4632 C3]
gi|354913961|gb|EHF73946.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-4632 C4]
gi|354921639|gb|EHF81560.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-4632 C5]
gi|371593613|gb|EHN82491.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
H494]
gi|375322425|gb|EHS68182.1| 16S rRNA methyltransferase B [Escherichia coli O157:H43 str. T22]
gi|378138988|gb|EHX00237.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC11B]
gi|378145544|gb|EHX06706.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC11D]
gi|378146854|gb|EHX08003.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC11C]
gi|378155242|gb|EHX16301.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC11E]
gi|378162340|gb|EHX23304.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC12B]
gi|378166153|gb|EHX27079.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC12A]
gi|378166875|gb|EHX27793.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC12C]
gi|378179651|gb|EHX40359.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC12D]
gi|378183918|gb|EHX44557.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC12E]
gi|378213496|gb|EHX73808.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC14A]
gi|378235102|gb|EHX95174.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC15A]
gi|378240438|gb|EHY00408.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC15B]
gi|378244909|gb|EHY04850.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC15C]
gi|378252772|gb|EHY12658.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC15D]
gi|378257302|gb|EHY17142.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC15E]
gi|383391285|gb|AFH16243.1| 16S rRNA methyltransferase B [Escherichia coli KO11FL]
gi|383406873|gb|AFH13116.1| 16S rRNA methyltransferase B [Escherichia coli W]
gi|383476273|gb|EID68219.1| sun protein [Escherichia coli W26]
gi|385709726|gb|EIG46722.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
B799]
gi|386149516|gb|EIH00805.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
5.0588]
gi|386155902|gb|EIH12252.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
97.0259]
gi|386162826|gb|EIH24622.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
1.2264]
gi|386166769|gb|EIH33289.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
96.0497]
gi|386173728|gb|EIH45740.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
99.0741]
gi|386176574|gb|EIH54053.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
3.2608]
gi|386183802|gb|EIH66549.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
93.0624]
gi|386200757|gb|EIH99747.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
96.154]
gi|386207432|gb|EII11937.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
5.0959]
gi|386219782|gb|EII36246.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
4.0967]
gi|386230093|gb|EII57448.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
3.3884]
gi|388335311|gb|EIL01880.1| 16S rRNA methyltransferase B [Escherichia coli O103:H2 str.
CVM9450]
gi|388419338|gb|EIL79080.1| 16S rRNA methyltransferase B [Escherichia coli CUMT8]
gi|391310238|gb|EIQ67893.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EPEC C342-62]
gi|397783633|gb|EJK94491.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
STEC_O31]
gi|406775816|gb|AFS55240.1| 16S rRNA methyltransferase B [Escherichia coli O104:H4 str.
2009EL-2050]
gi|407052390|gb|AFS72441.1| 16S rRNA methyltransferase B [Escherichia coli O104:H4 str.
2011C-3493]
gi|407067286|gb|AFS88333.1| 16S rRNA methyltransferase B [Escherichia coli O104:H4 str.
2009EL-2071]
gi|408210422|gb|EKI34986.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
3006]
gi|408341602|gb|EKJ56046.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
0.1288]
gi|429346686|gb|EKY83465.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-02092]
gi|429356665|gb|EKY93340.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-02033-1]
gi|429357540|gb|EKY94213.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-02030]
gi|429372832|gb|EKZ09381.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-02093]
gi|429374773|gb|EKZ11312.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-02281]
gi|429377403|gb|EKZ13924.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-02318]
gi|429388635|gb|EKZ25060.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-02913]
gi|429391404|gb|EKZ27808.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-03439]
gi|429392413|gb|EKZ28814.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-03943]
gi|429401934|gb|EKZ38227.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. 11-04080]
gi|429402987|gb|EKZ39272.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. Ec11-9990]
gi|429406614|gb|EKZ42869.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. Ec11-9450]
gi|429414655|gb|EKZ50829.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. Ec11-4984]
gi|429418125|gb|EKZ54271.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. Ec11-4986]
gi|429424417|gb|EKZ60518.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. Ec11-4987]
gi|429428220|gb|EKZ64296.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. Ec11-4988]
gi|429433277|gb|EKZ69310.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. Ec11-5603]
gi|429440237|gb|EKZ76215.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. Ec11-5604]
gi|429445135|gb|EKZ81077.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. Ec12-0465]
gi|429449076|gb|EKZ84978.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. Ec11-6006]
gi|429454727|gb|EKZ90585.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. Ec12-0466]
gi|429458834|gb|EKZ94654.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O104:H4 str. Ec11-9941]
gi|430896097|gb|ELC18341.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE12]
gi|431004225|gb|ELD19451.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE210]
gi|431057894|gb|ELD67304.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE234]
gi|431060765|gb|ELD70087.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE233]
gi|431211633|gb|ELF09594.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE142]
gi|431293694|gb|ELF83977.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE29]
gi|431307279|gb|ELF95571.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE48]
gi|431336984|gb|ELG24078.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE78]
gi|431349237|gb|ELG36078.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE79]
gi|431352978|gb|ELG39736.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE91]
gi|431382338|gb|ELG66676.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE136]
gi|431382985|gb|ELG67126.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE135]
gi|431397775|gb|ELG81207.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE144]
gi|431460710|gb|ELH40995.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE184]
gi|431477174|gb|ELH56944.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE203]
gi|431608021|gb|ELI77373.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE138]
gi|431713602|gb|ELJ77829.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE90]
gi|449314431|gb|EMD04597.1| 16S rRNA methyltransferase B [Escherichia coli O08]
Length = 429
Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|420338988|ref|ZP_14840540.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
K-315]
gi|391257216|gb|EIQ16336.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
K-315]
Length = 420
Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 69/117 (58%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 307 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 366
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP + DGFFY+ K+
Sbjct: 367 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGAGEG---DGFFYAKLIKK 420
>gi|419926681|ref|ZP_14444429.1| 16S rRNA methyltransferase B [Escherichia coli 541-1]
gi|388408974|gb|EIL69301.1| 16S rRNA methyltransferase B [Escherichia coli 541-1]
Length = 429
Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|419863992|ref|ZP_14386486.1| 16S rRNA methyltransferase B [Escherichia coli O103:H25 str.
CVM9340]
gi|388341140|gb|EIL07283.1| 16S rRNA methyltransferase B [Escherichia coli O103:H25 str.
CVM9340]
Length = 429
Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|386620896|ref|YP_006140476.1| 16S ribosomal RNA methyltransferase B [Escherichia coli NA114]
gi|387831166|ref|YP_003351103.1| putative rRNA methylase [Escherichia coli SE15]
gi|432423694|ref|ZP_19666232.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE178]
gi|432501843|ref|ZP_19743594.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE216]
gi|432560556|ref|ZP_19797211.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE49]
gi|432696153|ref|ZP_19931345.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE162]
gi|432707630|ref|ZP_19942706.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE6]
gi|432922420|ref|ZP_20125264.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE173]
gi|432929150|ref|ZP_20130200.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE175]
gi|432982732|ref|ZP_20171502.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE211]
gi|433098088|ref|ZP_20284263.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE139]
gi|433107536|ref|ZP_20293500.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE148]
gi|281180323|dbj|BAI56653.1| putative rRNA methylase [Escherichia coli SE15]
gi|333971397|gb|AEG38202.1| 16S ribosomal RNA methyltransferase B [Escherichia coli NA114]
gi|430942038|gb|ELC62176.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE178]
gi|431026022|gb|ELD39097.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE216]
gi|431088617|gb|ELD94487.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE49]
gi|431231379|gb|ELF27140.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE162]
gi|431255164|gb|ELF48418.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE6]
gi|431435418|gb|ELH17027.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE173]
gi|431440558|gb|ELH21886.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE175]
gi|431489330|gb|ELH68957.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE211]
gi|431613116|gb|ELI82317.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE139]
gi|431624661|gb|ELI93259.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE148]
Length = 429
Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|170684100|ref|YP_001745551.1| 16S rRNA methyltransferase B [Escherichia coli SMS-3-5]
gi|224493251|sp|B1LGP5.1|RSMB_ECOSM RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|170521818|gb|ACB19996.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
SMS-3-5]
Length = 429
Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|293412707|ref|ZP_06655375.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
B354]
gi|301018854|ref|ZP_07183093.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 69-1]
gi|419918768|ref|ZP_14436946.1| 16S rRNA methyltransferase B [Escherichia coli KD2]
gi|432393880|ref|ZP_19636702.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE21]
gi|291468354|gb|EFF10847.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
B354]
gi|300399511|gb|EFJ83049.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 69-1]
gi|388389537|gb|EIL51064.1| 16S rRNA methyltransferase B [Escherichia coli KD2]
gi|430915092|gb|ELC36176.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE21]
Length = 429
Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|15803816|ref|NP_289850.1| 16S rRNA methyltransferase GidB [Escherichia coli O157:H7 str.
EDL933]
gi|168752263|ref|ZP_02777285.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC4113]
gi|168758516|ref|ZP_02783523.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC4401]
gi|168764971|ref|ZP_02789978.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC4501]
gi|168769150|ref|ZP_02794157.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC4486]
gi|168777854|ref|ZP_02802861.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC4196]
gi|168783855|ref|ZP_02808862.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC4076]
gi|168786178|ref|ZP_02811185.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC869]
gi|168802718|ref|ZP_02827725.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC508]
gi|195939836|ref|ZP_03085218.1| 16S rRNA methyltransferase B [Escherichia coli O157:H7 str. EC4024]
gi|208808123|ref|ZP_03250460.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC4206]
gi|208812777|ref|ZP_03254106.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC4045]
gi|208820338|ref|ZP_03260658.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC4042]
gi|209396232|ref|YP_002272745.1| 16S rRNA methyltransferase B [Escherichia coli O157:H7 str. EC4115]
gi|217326360|ref|ZP_03442444.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. TW14588]
gi|254795225|ref|YP_003080062.1| 16S rRNA methyltransferase B [Escherichia coli O157:H7 str.
TW14359]
gi|261224593|ref|ZP_05938874.1| 16S rRNA m5C967 methyltransferase [Escherichia coli O157:H7 str.
FRIK2000]
gi|261254513|ref|ZP_05947046.1| 16S rRNA m5C967 methyltransferase [Escherichia coli O157:H7 str.
FRIK966]
gi|387884458|ref|YP_006314760.1| 16S rRNA methyltransferase B [Escherichia coli Xuzhou21]
gi|416311802|ref|ZP_11657199.1| Ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. 1044]
gi|416320321|ref|ZP_11662873.1| Ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC1212]
gi|416326433|ref|ZP_11666642.1| Ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. 1125]
gi|416777936|ref|ZP_11875508.1| 16S rRNA methyltransferase B [Escherichia coli O157:H7 str. G5101]
gi|419047499|ref|ZP_13594431.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC3A]
gi|419053055|ref|ZP_13599922.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC3B]
gi|419060197|ref|ZP_13606988.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC3C]
gi|419064554|ref|ZP_13611274.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC3D]
gi|419072617|ref|ZP_13618207.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC3E]
gi|419084013|ref|ZP_13629440.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC4A]
gi|419088360|ref|ZP_13633711.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC4B]
gi|419095252|ref|ZP_13640522.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC4C]
gi|419100135|ref|ZP_13645325.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC4D]
gi|419105903|ref|ZP_13651027.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC4E]
gi|419112055|ref|ZP_13657101.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC4F]
gi|420271731|ref|ZP_14774082.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA22]
gi|420277324|ref|ZP_14779604.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA40]
gi|420288824|ref|ZP_14791006.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TW10246]
gi|420294432|ref|ZP_14796544.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TW11039]
gi|420300287|ref|ZP_14802330.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TW09109]
gi|420306538|ref|ZP_14808526.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TW10119]
gi|420311718|ref|ZP_14813646.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1738]
gi|420317149|ref|ZP_14819021.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1734]
gi|421815693|ref|ZP_16251350.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
8.0416]
gi|421820819|ref|ZP_16256298.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
10.0821]
gi|421826125|ref|ZP_16261478.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
FRIK920]
gi|421832875|ref|ZP_16268155.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA7]
gi|423727243|ref|ZP_17701154.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA31]
gi|424085901|ref|ZP_17822387.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
FDA517]
gi|424092300|ref|ZP_17828229.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
FRIK1996]
gi|424098973|ref|ZP_17834248.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
FRIK1985]
gi|424105185|ref|ZP_17839927.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
FRIK1990]
gi|424117773|ref|ZP_17851605.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA3]
gi|424130109|ref|ZP_17863011.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA9]
gi|424149386|ref|ZP_17880756.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA15]
gi|424155234|ref|ZP_17886165.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA24]
gi|424254406|ref|ZP_17891712.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA25]
gi|424332908|ref|ZP_17897618.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA28]
gi|424451672|ref|ZP_17903340.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA32]
gi|424464322|ref|ZP_17914693.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA39]
gi|424477128|ref|ZP_17926440.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA42]
gi|424482888|ref|ZP_17931863.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TW07945]
gi|424489068|ref|ZP_17937613.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TW09098]
gi|424495733|ref|ZP_17943344.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TW09195]
gi|424502422|ref|ZP_17949307.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC4203]
gi|424508674|ref|ZP_17955055.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC4196]
gi|424516028|ref|ZP_17960660.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TW14313]
gi|424522226|ref|ZP_17966337.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TW14301]
gi|424528102|ref|ZP_17971813.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC4421]
gi|424534250|ref|ZP_17977593.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC4422]
gi|424540303|ref|ZP_17983242.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC4013]
gi|424546434|ref|ZP_17988800.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC4402]
gi|424552656|ref|ZP_17994495.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC4439]
gi|424558841|ref|ZP_18000246.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC4436]
gi|424565181|ref|ZP_18006179.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC4437]
gi|424577466|ref|ZP_18017514.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1845]
gi|424583285|ref|ZP_18022927.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1863]
gi|425099959|ref|ZP_18502687.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
3.4870]
gi|425106056|ref|ZP_18508368.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
5.2239]
gi|425112067|ref|ZP_18513983.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
6.0172]
gi|425127991|ref|ZP_18529154.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
8.0586]
gi|425133735|ref|ZP_18534580.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
8.2524]
gi|425140311|ref|ZP_18540687.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
10.0833]
gi|425146019|ref|ZP_18546007.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
10.0869]
gi|425152138|ref|ZP_18551748.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
88.0221]
gi|425158012|ref|ZP_18557271.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA34]
gi|425164361|ref|ZP_18563243.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
FDA506]
gi|425170105|ref|ZP_18568573.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
FDA507]
gi|425176164|ref|ZP_18574279.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
FDA504]
gi|425182208|ref|ZP_18579898.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
FRIK1999]
gi|425188474|ref|ZP_18585742.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
FRIK1997]
gi|425195241|ref|ZP_18592006.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
NE1487]
gi|425201716|ref|ZP_18597918.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
NE037]
gi|425208101|ref|ZP_18603893.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
FRIK2001]
gi|425213856|ref|ZP_18609251.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA4]
gi|425219978|ref|ZP_18614936.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA23]
gi|425226526|ref|ZP_18620988.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA49]
gi|425232783|ref|ZP_18626818.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA45]
gi|425238706|ref|ZP_18632421.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TT12B]
gi|425256919|ref|ZP_18649426.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
CB7326]
gi|425263171|ref|ZP_18655167.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC96038]
gi|425296624|ref|ZP_18686787.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA38]
gi|425331759|ref|ZP_18719590.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1846]
gi|425337936|ref|ZP_18725287.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1847]
gi|425344249|ref|ZP_18731134.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1848]
gi|425356356|ref|ZP_18742418.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1850]
gi|425362317|ref|ZP_18747959.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1856]
gi|425368534|ref|ZP_18753652.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1862]
gi|425387738|ref|ZP_18771292.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1866]
gi|425394390|ref|ZP_18777494.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1868]
gi|425400530|ref|ZP_18783230.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1869]
gi|425406619|ref|ZP_18788836.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1870]
gi|425413005|ref|ZP_18794763.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
NE098]
gi|425419318|ref|ZP_18800582.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
FRIK523]
gi|425430592|ref|ZP_18811196.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
0.1304]
gi|428955098|ref|ZP_19026888.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
88.1042]
gi|428961086|ref|ZP_19032375.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
89.0511]
gi|428967705|ref|ZP_19038412.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
90.0091]
gi|428973449|ref|ZP_19043770.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
90.0039]
gi|428979901|ref|ZP_19049716.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
90.2281]
gi|428985666|ref|ZP_19055053.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
93.0055]
gi|428991817|ref|ZP_19060800.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
93.0056]
gi|428997704|ref|ZP_19066293.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
94.0618]
gi|429003980|ref|ZP_19072073.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
95.0183]
gi|429010079|ref|ZP_19077529.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
95.1288]
gi|429022433|ref|ZP_19088948.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
96.0428]
gi|429028495|ref|ZP_19094483.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
96.0427]
gi|429034668|ref|ZP_19100185.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
96.0939]
gi|429040754|ref|ZP_19105849.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
96.0932]
gi|429046614|ref|ZP_19111321.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
96.0107]
gi|429052799|ref|ZP_19117352.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
97.0003]
gi|429057485|ref|ZP_19121764.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
97.1742]
gi|429062975|ref|ZP_19126959.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
97.0007]
gi|429069210|ref|ZP_19132661.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
99.0672]
gi|429075881|ref|ZP_19139119.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
99.0678]
gi|429828394|ref|ZP_19359411.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
96.0109]
gi|429834830|ref|ZP_19365128.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
97.0010]
gi|444926908|ref|ZP_21246181.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
09BKT078844]
gi|444933349|ref|ZP_21252342.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
99.0814]
gi|444939295|ref|ZP_21257991.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
99.0815]
gi|444944309|ref|ZP_21262782.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
99.0816]
gi|444949091|ref|ZP_21267390.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
99.0839]
gi|444954740|ref|ZP_21272815.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
99.0848]
gi|444960928|ref|ZP_21278735.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
99.1753]
gi|444961605|ref|ZP_21279377.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
99.1775]
gi|444982701|ref|ZP_21299596.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
ATCC 700728]
gi|444987512|ref|ZP_21304284.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA11]
gi|444992728|ref|ZP_21309366.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA19]
gi|445004352|ref|ZP_21320727.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA2]
gi|445009501|ref|ZP_21325722.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA47]
gi|445015553|ref|ZP_21331630.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA48]
gi|445015779|ref|ZP_21331842.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA8]
gi|445025997|ref|ZP_21341809.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
7.1982]
gi|445030851|ref|ZP_21346515.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
99.1781]
gi|445036876|ref|ZP_21352392.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
99.1762]
gi|445047161|ref|ZP_21362405.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
3.4880]
gi|445052687|ref|ZP_21367707.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
95.0083]
gi|445054034|ref|ZP_21369003.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
99.0670]
gi|452971240|ref|ZP_21969467.1| 16S rRNA methyltransferase B [Escherichia coli O157:H7 str. EC4009]
gi|46396973|sp|Q8XEE5.1|RSMB_ECO57 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|224493246|sp|B5YT08.1|RSMB_ECO5E RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|12517918|gb|AAG58410.1|AE005556_3 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
gi|187767005|gb|EDU30849.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC4196]
gi|188013841|gb|EDU51963.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC4113]
gi|188998877|gb|EDU67863.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC4076]
gi|189354681|gb|EDU73100.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC4401]
gi|189361764|gb|EDU80183.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC4486]
gi|189365121|gb|EDU83537.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC4501]
gi|189373894|gb|EDU92310.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC869]
gi|189375353|gb|EDU93769.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC508]
gi|208727924|gb|EDZ77525.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC4206]
gi|208734054|gb|EDZ82741.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC4045]
gi|208740461|gb|EDZ88143.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC4042]
gi|209157632|gb|ACI35065.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC4115]
gi|209757340|gb|ACI76982.1| RNA methyltransferase [Escherichia coli]
gi|209757342|gb|ACI76983.1| RNA methyltransferase [Escherichia coli]
gi|209757346|gb|ACI76985.1| RNA methyltransferase [Escherichia coli]
gi|217322581|gb|EEC31005.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. TW14588]
gi|254594625|gb|ACT73986.1| 16S rRNA m5C967 methyltransferase [Escherichia coli O157:H7 str.
TW14359]
gi|320191677|gb|EFW66327.1| Ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC1212]
gi|320639593|gb|EFX09187.1| 16S rRNA methyltransferase B [Escherichia coli O157:H7 str. G5101]
gi|326342537|gb|EGD66311.1| Ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. 1044]
gi|326344524|gb|EGD68273.1| Ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. 1125]
gi|377890207|gb|EHU54665.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC3A]
gi|377891902|gb|EHU56354.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC3B]
gi|377900281|gb|EHU64615.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC3C]
gi|377905441|gb|EHU69710.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC3E]
gi|377907052|gb|EHU71288.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC3D]
gi|377920567|gb|EHU84584.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC4A]
gi|377927422|gb|EHU91337.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC4B]
gi|377937061|gb|EHV00849.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC4C]
gi|377938794|gb|EHV02557.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC4D]
gi|377945406|gb|EHV09101.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC4E]
gi|377953416|gb|EHV16994.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC4F]
gi|386797916|gb|AFJ30950.1| 16S rRNA methyltransferase B [Escherichia coli Xuzhou21]
gi|390638802|gb|EIN18296.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
FRIK1996]
gi|390640468|gb|EIN19926.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
FDA517]
gi|390658118|gb|EIN35920.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
FRIK1985]
gi|390661209|gb|EIN38871.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
FRIK1990]
gi|390675243|gb|EIN51400.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA3]
gi|390682205|gb|EIN57981.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA9]
gi|390698815|gb|EIN73188.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA15]
gi|390712189|gb|EIN85146.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA22]
gi|390719329|gb|EIN92055.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA25]
gi|390721279|gb|EIN93979.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA24]
gi|390725338|gb|EIN97847.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA28]
gi|390738884|gb|EIO10081.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA31]
gi|390739590|gb|EIO10758.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA32]
gi|390756199|gb|EIO25710.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA40]
gi|390763592|gb|EIO32833.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA39]
gi|390766391|gb|EIO35515.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA42]
gi|390787349|gb|EIO54839.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TW07945]
gi|390787776|gb|EIO55249.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TW10246]
gi|390794064|gb|EIO61365.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TW11039]
gi|390802347|gb|EIO69387.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TW09098]
gi|390804658|gb|EIO71606.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TW09109]
gi|390814253|gb|EIO80833.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TW10119]
gi|390823772|gb|EIO89803.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC4203]
gi|390825633|gb|EIO91550.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TW09195]
gi|390828666|gb|EIO94317.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC4196]
gi|390843114|gb|EIP06932.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TW14313]
gi|390843983|gb|EIP07750.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TW14301]
gi|390848649|gb|EIP12109.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC4421]
gi|390859097|gb|EIP21457.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC4422]
gi|390863495|gb|EIP25629.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC4013]
gi|390868113|gb|EIP29876.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC4402]
gi|390876246|gb|EIP37234.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC4439]
gi|390881607|gb|EIP42182.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC4436]
gi|390891470|gb|EIP51100.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC4437]
gi|390898271|gb|EIP57544.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1738]
gi|390906360|gb|EIP65251.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1734]
gi|390916801|gb|EIP75242.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1863]
gi|390917544|gb|EIP75962.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1845]
gi|408062131|gb|EKG96637.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA7]
gi|408064509|gb|EKG98990.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
FRIK920]
gi|408067592|gb|EKH02025.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA34]
gi|408077493|gb|EKH11697.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
FDA506]
gi|408080968|gb|EKH15007.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
FDA507]
gi|408089452|gb|EKH22762.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
FDA504]
gi|408095535|gb|EKH28504.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
FRIK1999]
gi|408101936|gb|EKH34354.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
FRIK1997]
gi|408106542|gb|EKH38640.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
NE1487]
gi|408113356|gb|EKH44956.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
NE037]
gi|408119505|gb|EKH50571.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
FRIK2001]
gi|408125672|gb|EKH56268.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA4]
gi|408135545|gb|EKH65321.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA23]
gi|408138303|gb|EKH67978.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA49]
gi|408144733|gb|EKH73953.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA45]
gi|408153036|gb|EKH81446.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TT12B]
gi|408171399|gb|EKH98518.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
CB7326]
gi|408178102|gb|EKI04835.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC96038]
gi|408214732|gb|EKI39143.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA38]
gi|408244486|gb|EKI66915.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1846]
gi|408253261|gb|EKI74865.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1847]
gi|408257112|gb|EKI78456.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1848]
gi|408272259|gb|EKI92358.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1850]
gi|408275195|gb|EKI95169.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1856]
gi|408283572|gb|EKJ02729.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1862]
gi|408305279|gb|EKJ22678.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1868]
gi|408305968|gb|EKJ23348.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1866]
gi|408316875|gb|EKJ33128.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1869]
gi|408322436|gb|EKJ38422.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC1870]
gi|408324743|gb|EKJ40668.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
NE098]
gi|408334853|gb|EKJ49723.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
FRIK523]
gi|408344274|gb|EKJ58649.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
0.1304]
gi|408546795|gb|EKK24202.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
5.2239]
gi|408546913|gb|EKK24314.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
3.4870]
gi|408547904|gb|EKK25290.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
6.0172]
gi|408565193|gb|EKK41281.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
8.0586]
gi|408576817|gb|EKK52402.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
10.0833]
gi|408579450|gb|EKK54910.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
8.2524]
gi|408589320|gb|EKK63841.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
10.0869]
gi|408594904|gb|EKK69177.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
88.0221]
gi|408597147|gb|EKK71220.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
8.0416]
gi|408608298|gb|EKK81697.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
10.0821]
gi|427202339|gb|EKV72671.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
88.1042]
gi|427203576|gb|EKV73879.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
89.0511]
gi|427218770|gb|EKV87757.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
90.0091]
gi|427222342|gb|EKV91132.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
90.2281]
gi|427225553|gb|EKV94184.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
90.0039]
gi|427239380|gb|EKW06864.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
93.0056]
gi|427239772|gb|EKW07246.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
93.0055]
gi|427243824|gb|EKW11179.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
94.0618]
gi|427258161|gb|EKW24263.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
95.0183]
gi|427261502|gb|EKW27433.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
95.1288]
gi|427274459|gb|EKW39111.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
96.0428]
gi|427277110|gb|EKW41659.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
96.0427]
gi|427281438|gb|EKW45755.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
96.0939]
gi|427289864|gb|EKW53370.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
96.0932]
gi|427296633|gb|EKW59682.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
96.0107]
gi|427297080|gb|EKW60121.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
97.0003]
gi|427309476|gb|EKW71793.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
97.1742]
gi|427312720|gb|EKW74870.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
97.0007]
gi|427317155|gb|EKW79065.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
99.0672]
gi|427324536|gb|EKW86008.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
99.0678]
gi|429251853|gb|EKY36421.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
96.0109]
gi|429253128|gb|EKY37622.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
97.0010]
gi|444534739|gb|ELV14935.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
99.0814]
gi|444537598|gb|ELV17516.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
09BKT078844]
gi|444544262|gb|ELV23338.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
99.0815]
gi|444554301|gb|ELV31876.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
99.0816]
gi|444555504|gb|ELV32967.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
99.0839]
gi|444560773|gb|ELV37916.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
99.0848]
gi|444568578|gb|ELV45247.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
99.1753]
gi|444586466|gb|ELV61969.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
99.1775]
gi|444589114|gb|ELV64464.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
ATCC 700728]
gi|444590603|gb|ELV65913.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA11]
gi|444605007|gb|ELV79663.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA19]
gi|444611921|gb|ELV86238.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA2]
gi|444618217|gb|ELV92308.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA48]
gi|444619209|gb|ELV93260.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA47]
gi|444635155|gb|ELW08593.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
7.1982]
gi|444638662|gb|ELW11993.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
99.1781]
gi|444639518|gb|ELW12827.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA8]
gi|444642084|gb|ELW15294.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
99.1762]
gi|444657797|gb|ELW30263.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
3.4880]
gi|444660867|gb|ELW33212.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
95.0083]
gi|444675324|gb|ELW46778.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
99.0670]
Length = 429
Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|432487045|ref|ZP_19728953.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE212]
gi|433175169|ref|ZP_20359681.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE232]
gi|431013758|gb|ELD27480.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE212]
gi|431689604|gb|ELJ55107.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE232]
Length = 429
Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|16131168|ref|NP_417747.1| 16S rRNA m(5)C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli str.
K-12 substr. MG1655]
gi|157162762|ref|YP_001460080.1| 16S rRNA methyltransferase B [Escherichia coli HS]
gi|170018476|ref|YP_001723430.1| 16S rRNA methyltransferase B [Escherichia coli ATCC 8739]
gi|170082809|ref|YP_001732129.1| 16S rRNA methyltransferase B [Escherichia coli str. K-12 substr.
DH10B]
gi|188493203|ref|ZP_03000473.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
53638]
gi|194439994|ref|ZP_03072052.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
101-1]
gi|238902379|ref|YP_002928175.1| 16S rRNA methyltransferase B [Escherichia coli BW2952]
gi|251786542|ref|YP_003000846.1| 16S rRNA m[5]C967 methyltransferase [Escherichia coli BL21(DE3)]
gi|253771888|ref|YP_003034719.1| 16S rRNA methyltransferase B [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|254163216|ref|YP_003046324.1| 16S rRNA methyltransferase B [Escherichia coli B str. REL606]
gi|254289966|ref|YP_003055714.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli
BL21(DE3)]
gi|300932181|ref|ZP_07147461.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 187-1]
gi|300946510|ref|ZP_07160776.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 116-1]
gi|300955326|ref|ZP_07167708.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 175-1]
gi|301021178|ref|ZP_07185214.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 196-1]
gi|301643892|ref|ZP_07243922.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 146-1]
gi|312972450|ref|ZP_07786624.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
1827-70]
gi|331643984|ref|ZP_08345113.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
H736]
gi|386283044|ref|ZP_10060684.1| ribosomal RNA small subunit methyltransferase B [Escherichia sp.
4_1_40B]
gi|386594004|ref|YP_006090404.1| sun protein [Escherichia coli DH1]
gi|386616067|ref|YP_006135733.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
UMNK88]
gi|386706531|ref|YP_006170378.1| Ribosomal RNA small subunit methyltransferase B [Escherichia coli
P12b]
gi|387613964|ref|YP_006117080.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
ETEC H10407]
gi|387622940|ref|YP_006130568.1| 16S rRNA methyltransferase B [Escherichia coli DH1]
gi|388479950|ref|YP_492144.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli str.
K-12 substr. W3110]
gi|404376658|ref|ZP_10981812.1| ribosomal RNA small subunit methyltransferase B [Escherichia sp.
1_1_43]
gi|417264305|ref|ZP_12051699.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
2.3916]
gi|417271488|ref|ZP_12058837.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
2.4168]
gi|417275891|ref|ZP_12063223.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
3.2303]
gi|417291919|ref|ZP_12079200.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
B41]
gi|417614894|ref|ZP_12265348.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
STEC_EH250]
gi|417636378|ref|ZP_12286587.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
STEC_S1191]
gi|417946710|ref|ZP_12589921.1| 16S rRNA methyltransferase B [Escherichia coli XH140A]
gi|417978398|ref|ZP_12619166.1| 16S rRNA methyltransferase B [Escherichia coli XH001]
gi|418304912|ref|ZP_12916706.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
UMNF18]
gi|418956328|ref|ZP_13508256.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
J53]
gi|419144365|ref|ZP_13689095.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC6A]
gi|419150236|ref|ZP_13694884.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC6B]
gi|419157195|ref|ZP_13701729.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC6D]
gi|419166155|ref|ZP_13710606.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC6E]
gi|419176982|ref|ZP_13720793.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC7B]
gi|419813385|ref|ZP_14338233.1| 16S rRNA methyltransferase B [Escherichia coli O32:H37 str. P4]
gi|419940145|ref|ZP_14456899.1| 16S rRNA methyltransferase B [Escherichia coli 75]
gi|421778033|ref|ZP_16214619.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
AD30]
gi|422768924|ref|ZP_16822648.1| ribosomal RNA small methyltransferase B [Escherichia coli E1520]
gi|422773591|ref|ZP_16827275.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
E482]
gi|422788824|ref|ZP_16841559.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
H489]
gi|422793331|ref|ZP_16846027.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TA007]
gi|423702790|ref|ZP_17677222.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
H730]
gi|425116842|ref|ZP_18518631.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
8.0566]
gi|425121592|ref|ZP_18523277.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
8.0569]
gi|425274479|ref|ZP_18665876.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TW15901]
gi|425285058|ref|ZP_18676087.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TW00353]
gi|425307069|ref|ZP_18696748.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
N1]
gi|432366735|ref|ZP_19609852.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE10]
gi|432418810|ref|ZP_19661403.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE44]
gi|432565654|ref|ZP_19802214.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE51]
gi|432577515|ref|ZP_19813964.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE56]
gi|432628916|ref|ZP_19864884.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE77]
gi|432638489|ref|ZP_19874354.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE81]
gi|432662493|ref|ZP_19898127.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE111]
gi|432672372|ref|ZP_19907895.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE119]
gi|432687101|ref|ZP_19922391.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE156]
gi|432688558|ref|ZP_19923828.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE161]
gi|432706022|ref|ZP_19941117.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE171]
gi|432738784|ref|ZP_19973518.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE42]
gi|432877351|ref|ZP_20095071.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE154]
gi|432957139|ref|ZP_20148642.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE197]
gi|433049723|ref|ZP_20237057.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE120]
gi|442592590|ref|ZP_21010564.1| 16S rRNA (cytosine(967)-C(5))-methyltransferase [Escherichia coli
O10:K5(L):H4 str. ATCC 23506]
gi|450251208|ref|ZP_21901756.1| 16S rRNA methyltransferase B [Escherichia coli S17]
gi|1169715|sp|P36929.2|RSMB_ECOLI RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|224493247|sp|B1X6E1.1|RSMB_ECODH RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|224493248|sp|A8A593.1|RSMB_ECOHS RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|224493250|sp|B1IQ11.1|RSMB_ECOLC RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|259495485|sp|C4ZUE3.1|RSMB_ECOBW RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|49259108|pdb|1SQF|A Chain A, The Crystal Structure Of E. Coli Fmu Binary Complex With
S- Adenosylmethionine At 2.1 A Resolution
gi|49259109|pdb|1SQG|A Chain A, The Crystal Structure Of The E. Coli Fmu Apoenzyme At 1.65
A Resolution
gi|1772512|emb|CAA71359.1| sun [Escherichia coli str. K-12 substr. MG1655]
gi|2367212|gb|AAC76314.1| 16S rRNA m(5)C967 methyltransferase, SAM-dependent [Escherichia
coli str. K-12 substr. MG1655]
gi|85676753|dbj|BAE78003.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli str.
K12 substr. W3110]
gi|157068442|gb|ABV07697.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
HS]
gi|169753404|gb|ACA76103.1| sun protein [Escherichia coli ATCC 8739]
gi|169890644|gb|ACB04351.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli str.
K-12 substr. DH10B]
gi|188488402|gb|EDU63505.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
53638]
gi|194421046|gb|EDX37075.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
101-1]
gi|226838955|gb|EEH70978.1| ribosomal RNA small subunit methyltransferase B [Escherichia sp.
1_1_43]
gi|238859734|gb|ACR61732.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli
BW2952]
gi|242378815|emb|CAQ33607.1| 16S rRNA m[5]C967 methyltransferase [Escherichia coli BL21(DE3)]
gi|253322932|gb|ACT27534.1| sun protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|253975117|gb|ACT40788.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli B
str. REL606]
gi|253979273|gb|ACT44943.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli
BL21(DE3)]
gi|260447693|gb|ACX38115.1| sun protein [Escherichia coli DH1]
gi|299881625|gb|EFI89836.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 196-1]
gi|300317770|gb|EFJ67554.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 175-1]
gi|300453816|gb|EFK17436.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 116-1]
gi|300460065|gb|EFK23558.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 187-1]
gi|301077735|gb|EFK92541.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 146-1]
gi|309703700|emb|CBJ03041.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
ETEC H10407]
gi|310334827|gb|EFQ01032.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
1827-70]
gi|315137864|dbj|BAJ45023.1| 16S rRNA methyltransferase B [Escherichia coli DH1]
gi|323934513|gb|EGB30921.1| ribosomal RNA small methyltransferase B [Escherichia coli E1520]
gi|323939290|gb|EGB35502.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
E482]
gi|323959561|gb|EGB55214.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
H489]
gi|323970092|gb|EGB65366.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TA007]
gi|331036278|gb|EGI08504.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
H736]
gi|332345236|gb|AEE58570.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
UMNK88]
gi|339417010|gb|AEJ58682.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
UMNF18]
gi|342361518|gb|EGU25654.1| 16S rRNA methyltransferase B [Escherichia coli XH140A]
gi|344191995|gb|EGV46097.1| 16S rRNA methyltransferase B [Escherichia coli XH001]
gi|345359909|gb|EGW92083.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
STEC_EH250]
gi|345385266|gb|EGX15111.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
STEC_S1191]
gi|359333471|dbj|BAL39918.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli str.
K-12 substr. MDS42]
gi|377989527|gb|EHV52693.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC6B]
gi|377990610|gb|EHV53768.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC6A]
gi|378007639|gb|EHV70607.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC6E]
gi|378016299|gb|EHV79185.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC6D]
gi|378030417|gb|EHV93018.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC7B]
gi|383104699|gb|AFG42208.1| Ribosomal RNA small subunit methyltransferase B [Escherichia coli
P12b]
gi|384381088|gb|EIE38951.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
J53]
gi|385153727|gb|EIF15755.1| 16S rRNA methyltransferase B [Escherichia coli O32:H37 str. P4]
gi|385709524|gb|EIG46521.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
H730]
gi|386120045|gb|EIG68682.1| ribosomal RNA small subunit methyltransferase B [Escherichia sp.
4_1_40B]
gi|386222014|gb|EII44443.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
2.3916]
gi|386235188|gb|EII67164.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
2.4168]
gi|386241142|gb|EII78060.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
3.2303]
gi|386254241|gb|EIJ03931.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
B41]
gi|388404237|gb|EIL64724.1| 16S rRNA methyltransferase B [Escherichia coli 75]
gi|408190912|gb|EKI16539.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TW15901]
gi|408199664|gb|EKI24859.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TW00353]
gi|408226281|gb|EKI49930.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
N1]
gi|408456938|gb|EKJ80743.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
AD30]
gi|408565132|gb|EKK41223.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
8.0566]
gi|408566362|gb|EKK42434.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
8.0569]
gi|430891538|gb|ELC14064.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE10]
gi|430936588|gb|ELC56856.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE44]
gi|431090250|gb|ELD96019.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE51]
gi|431112609|gb|ELE16291.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE56]
gi|431160786|gb|ELE61287.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE77]
gi|431168811|gb|ELE69043.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE81]
gi|431197075|gb|ELE95941.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE111]
gi|431208158|gb|ELF06380.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE119]
gi|431219536|gb|ELF16930.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE156]
gi|431235860|gb|ELF31074.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE161]
gi|431240702|gb|ELF35150.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE171]
gi|431279812|gb|ELF70759.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE42]
gi|431418053|gb|ELH00467.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE154]
gi|431464708|gb|ELH44826.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE197]
gi|431562558|gb|ELI35857.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE120]
gi|441607671|emb|CCP96011.1| 16S rRNA (cytosine(967)-C(5))-methyltransferase [Escherichia coli
O10:K5(L):H4 str. ATCC 23506]
gi|449315684|gb|EMD05821.1| 16S rRNA methyltransferase B [Escherichia coli S17]
Length = 429
Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|422818448|ref|ZP_16866660.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
M919]
gi|385537854|gb|EIF84721.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
M919]
Length = 429
Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|416344189|ref|ZP_11678063.1| Ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC4100B]
gi|419279925|ref|ZP_13822167.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC10E]
gi|419347036|ref|ZP_13888406.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC13A]
gi|419351497|ref|ZP_13892827.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC13B]
gi|419356969|ref|ZP_13898216.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC13C]
gi|419363205|ref|ZP_13904398.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC13D]
gi|419367098|ref|ZP_13908248.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC13E]
gi|419377353|ref|ZP_13918372.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC14B]
gi|419382691|ref|ZP_13923633.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC14C]
gi|419387995|ref|ZP_13928863.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC14D]
gi|432811010|ref|ZP_20044867.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE101]
gi|320199476|gb|EFW74066.1| Ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC4100B]
gi|378124838|gb|EHW86241.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC10E]
gi|378183748|gb|EHX44389.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC13A]
gi|378195250|gb|EHX55750.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC13D]
gi|378196457|gb|EHX56943.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC13C]
gi|378197341|gb|EHX57822.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC13B]
gi|378210290|gb|EHX70653.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC13E]
gi|378216066|gb|EHX76354.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC14B]
gi|378224632|gb|EHX84833.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC14C]
gi|378228550|gb|EHX88701.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC14D]
gi|431360172|gb|ELG46783.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE101]
Length = 429
Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|331674796|ref|ZP_08375553.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TA280]
gi|432604113|ref|ZP_19840343.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE66]
gi|331067705|gb|EGI39103.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TA280]
gi|431137493|gb|ELE39338.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE66]
Length = 429
Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLIYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKSFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|331659579|ref|ZP_08360517.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TA206]
gi|331052794|gb|EGI24827.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TA206]
Length = 429
Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|215488588|ref|YP_002331019.1| 16S rRNA methyltransferase GidB [Escherichia coli O127:H6 str.
E2348/69]
gi|312968386|ref|ZP_07782596.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
2362-75]
gi|415839119|ref|ZP_11520937.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
RN587/1]
gi|417281710|ref|ZP_12069010.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
3003]
gi|417757632|ref|ZP_12405697.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC2B]
gi|418998668|ref|ZP_13546252.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC1A]
gi|419004007|ref|ZP_13551519.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC1B]
gi|419009681|ref|ZP_13557099.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC1C]
gi|419015266|ref|ZP_13562605.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC1D]
gi|419020311|ref|ZP_13567610.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC1E]
gi|419025775|ref|ZP_13572994.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC2A]
gi|419030905|ref|ZP_13578053.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC2C]
gi|419036550|ref|ZP_13583626.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC2D]
gi|419041609|ref|ZP_13588627.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC2E]
gi|425279676|ref|ZP_18670902.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
ARS4.2123]
gi|254766853|sp|B7UK12.1|RSMB_ECO27 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|215266660|emb|CAS11099.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli
O127:H6 str. E2348/69]
gi|312287211|gb|EFR15121.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
2362-75]
gi|323189106|gb|EFZ74390.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
RN587/1]
gi|377840292|gb|EHU05366.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC1A]
gi|377840458|gb|EHU05530.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC1C]
gi|377843013|gb|EHU08054.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC1B]
gi|377854262|gb|EHU19149.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC1D]
gi|377857312|gb|EHU22164.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC1E]
gi|377860487|gb|EHU25312.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC2A]
gi|377871283|gb|EHU35947.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC2B]
gi|377874181|gb|EHU38811.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC2C]
gi|377876303|gb|EHU40910.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC2D]
gi|377886783|gb|EHU51262.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC2E]
gi|386246039|gb|EII87769.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
3003]
gi|408198746|gb|EKI23962.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
ARS4.2123]
Length = 429
Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|445042681|ref|ZP_21358039.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA35]
gi|444651046|gb|ELW23856.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
PA35]
Length = 429
Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|416811984|ref|ZP_11890205.1| 16S rRNA methyltransferase B [Escherichia coli O55:H7 str. 3256-97]
gi|419122540|ref|ZP_13667482.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC5B]
gi|320655927|gb|EFX23847.1| 16S rRNA methyltransferase B [Escherichia coli O55:H7 str. 3256-97
TW 07815]
gi|377962608|gb|EHV26060.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC5B]
Length = 429
Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|291284647|ref|YP_003501465.1| ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) [Escherichia coli
O55:H7 str. CB9615]
gi|387508680|ref|YP_006160936.1| 16S rRNA methyltransferase B [Escherichia coli O55:H7 str. RM12579]
gi|416789220|ref|ZP_11880351.1| 16S rRNA methyltransferase B [Escherichia coli O157:H- str. 493-89]
gi|416801083|ref|ZP_11885256.1| 16S rRNA methyltransferase B [Escherichia coli O157:H- str. H 2687]
gi|416822289|ref|ZP_11894725.1| 16S rRNA methyltransferase B [Escherichia coli O55:H7 str. USDA
5905]
gi|419116824|ref|ZP_13661835.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC5A]
gi|419128103|ref|ZP_13672977.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC5C]
gi|419133392|ref|ZP_13678219.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC5D]
gi|420282989|ref|ZP_14785221.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TW06591]
gi|425251132|ref|ZP_18644070.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
5905]
gi|425269170|ref|ZP_18660795.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
5412]
gi|209757338|gb|ACI76981.1| RNA methyltransferase [Escherichia coli]
gi|209757344|gb|ACI76984.1| RNA methyltransferase [Escherichia coli]
gi|290764520|gb|ADD58481.1| Ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) [Escherichia coli
O55:H7 str. CB9615]
gi|320645091|gb|EFX14107.1| 16S rRNA methyltransferase B [Escherichia coli O157:H- str. 493-89]
gi|320650402|gb|EFX18868.1| 16S rRNA methyltransferase B [Escherichia coli O157:H- str. H 2687]
gi|320661379|gb|EFX28794.1| 16S rRNA methyltransferase B [Escherichia coli O55:H7 str. USDA
5905]
gi|374360674|gb|AEZ42381.1| 16S rRNA methyltransferase B [Escherichia coli O55:H7 str. RM12579]
gi|377958171|gb|EHV21691.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC5A]
gi|377970841|gb|EHV34199.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC5C]
gi|377972115|gb|EHV35465.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC5D]
gi|390779780|gb|EIO47494.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TW06591]
gi|408162093|gb|EKH90013.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
5905]
gi|408181314|gb|EKI07875.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
5412]
Length = 429
Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|82778586|ref|YP_404935.1| 16S rRNA methyltransferase GidB [Shigella dysenteriae Sd197]
gi|309785611|ref|ZP_07680242.1| ribosomal RNA small subunit methyltransferase B [Shigella
dysenteriae 1617]
gi|123742076|sp|Q32B61.1|RSMB_SHIDS RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|81242734|gb|ABB63444.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
gi|308926731|gb|EFP72207.1| ribosomal RNA small subunit methyltransferase B [Shigella
dysenteriae 1617]
Length = 429
Score = 92.0 bits (227), Expect = 8e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|82545651|ref|YP_409598.1| 16S rRNA methyltransferase B [Shigella boydii Sb227]
gi|416272757|ref|ZP_11643240.1| Ribosomal RNA small subunit methyltransferase B [Shigella
dysenteriae CDC 74-1112]
gi|420354785|ref|ZP_14855864.1| ribosomal RNA small subunit methyltransferase B [Shigella boydii
4444-74]
gi|420382524|ref|ZP_14881959.1| ribosomal RNA small subunit methyltransferase B [Shigella
dysenteriae 225-75]
gi|421685419|ref|ZP_16125195.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
1485-80]
gi|123728324|sp|Q31VY8.1|RSMB_SHIBS RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|81247062|gb|ABB67770.1| conserved hypothetical protein [Shigella boydii Sb227]
gi|320173933|gb|EFW49109.1| Ribosomal RNA small subunit methyltransferase B [Shigella
dysenteriae CDC 74-1112]
gi|391274472|gb|EIQ33280.1| ribosomal RNA small subunit methyltransferase B [Shigella boydii
4444-74]
gi|391298671|gb|EIQ56671.1| ribosomal RNA small subunit methyltransferase B [Shigella
dysenteriae 225-75]
gi|404334907|gb|EJZ61383.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
1485-80]
Length = 429
Score = 92.0 bits (227), Expect = 8e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|417851636|ref|ZP_12497339.1| 16S rRNA methyltransferase B [Pasteurella multocida subsp.
gallicida str. Anand1_poultry]
gi|338218861|gb|EGP04588.1| 16S rRNA methyltransferase B [Pasteurella multocida subsp.
gallicida str. Anand1_poultry]
Length = 446
Score = 92.0 bits (227), Expect = 8e-17, Method: Composition-based stats.
Identities = 51/119 (42%), Positives = 67/119 (56%), Gaps = 12/119 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR+ +DI L +IL LW +LKP G LL+ TC
Sbjct: 328 FDRILLDAPCSATGVIRRHPDIKWLRQASDISALVALQKQILQALWTVLKPNGILLYATC 387
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSP---------GQLLPTVNKKQDYDGFFYSLFQK 136
S+ EE+ Q F N+ D+ P Q LPT N DGF+Y+ +K
Sbjct: 388 SVLPEENALQIEQFLTNNVDAKLELLPFTAVEGAVGYQFLPTENGG---DGFYYAKLRK 443
>gi|416336396|ref|ZP_11672959.1| Ribosomal RNA small subunit methyltransferase B [Escherichia coli
WV_060327]
gi|320195380|gb|EFW70007.1| Ribosomal RNA small subunit methyltransferase B [Escherichia coli
WV_060327]
Length = 429
Score = 92.0 bits (227), Expect = 8e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|331654881|ref|ZP_08355880.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
M718]
gi|422836856|ref|ZP_16884890.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
E101]
gi|331046896|gb|EGI18974.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
M718]
gi|371606970|gb|EHN95555.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
E101]
Length = 429
Score = 92.0 bits (227), Expect = 8e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|293416707|ref|ZP_06659344.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
B185]
gi|417627052|ref|ZP_12277303.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
STEC_MHI813]
gi|291431283|gb|EFF04268.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
B185]
gi|345378762|gb|EGX10682.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
STEC_MHI813]
Length = 429
Score = 92.0 bits (227), Expect = 8e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|415776513|ref|ZP_11488034.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
3431]
gi|315617091|gb|EFU97701.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
3431]
Length = 429
Score = 91.7 bits (226), Expect = 8e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|432618525|ref|ZP_19854629.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE75]
gi|431151576|gb|ELE52589.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE75]
Length = 429
Score = 91.7 bits (226), Expect = 8e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|344943063|ref|ZP_08782350.1| sun protein [Methylobacter tundripaludum SV96]
gi|344260350|gb|EGW20622.1| sun protein [Methylobacter tundripaludum SV96]
Length = 435
Score = 91.7 bits (226), Expect = 8e-17, Method: Composition-based stats.
Identities = 49/135 (36%), Positives = 71/135 (52%), Gaps = 14/135 (10%)
Query: 17 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLK 76
N ++ K FDRIL D PC+ GV+RR+PDI LRR DI +L IL +W +L
Sbjct: 301 NPASWWDGKPFDRILLDAPCSALGVIRRHPDIKLLRRAEDIGQLQALQKNILQAVWPLLA 360
Query: 77 PGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL-----NSPGQLLPTVN---------K 122
PGG +L+ TCS+ +E+E+Q F H D++ L +S G +N
Sbjct: 361 PGGLMLYATCSILKQENEQQVQAFLAEHSDAVELPLFSDSSLGTTAWGINGACGRQILTG 420
Query: 123 KQDYDGFFYSLFQKR 137
+ DGF+Y+ K+
Sbjct: 421 ESAMDGFYYACISKQ 435
>gi|359299307|ref|ZP_09185146.1| 16S rRNA methyltransferase B [Haemophilus [parainfluenzae] CCUG
13788]
Length = 433
Score = 91.7 bits (226), Expect = 8e-17, Method: Composition-based stats.
Identities = 47/119 (39%), Positives = 67/119 (56%), Gaps = 11/119 (9%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR+++DI L+ +IL+ LW LKP G LL+ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRQESDIPALAALQAQILSALWARLKPNGVLLYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDS--------IRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
S+ E+ EQ F + D+ + Q P + + DGFFY+ K+
Sbjct: 376 SILPSENREQIERFVAENADAQLTEMDFHTEKTAMKQFFP---QNEGGDGFFYAKLTKQ 431
>gi|432451520|ref|ZP_19693777.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE193]
gi|433035168|ref|ZP_20222866.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE112]
gi|430977949|gb|ELC94772.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE193]
gi|431547560|gb|ELI21857.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE112]
Length = 429
Score = 91.7 bits (226), Expect = 8e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|424817837|ref|ZP_18242988.1| 16S rRNA methyltransferase B [Escherichia fergusonii ECD227]
gi|325498857|gb|EGC96716.1| 16S rRNA methyltransferase B [Escherichia fergusonii ECD227]
Length = 429
Score = 91.7 bits (226), Expect = 9e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGILIYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|407794100|ref|ZP_11141129.1| Ribosomal RNA small subunit methyltransferase B [Idiomarina
xiamenensis 10-D-4]
gi|407213524|gb|EKE83380.1| Ribosomal RNA small subunit methyltransferase B [Idiomarina
xiamenensis 10-D-4]
Length = 450
Score = 91.7 bits (226), Expect = 9e-17, Method: Composition-based stats.
Identities = 48/130 (36%), Positives = 73/130 (56%), Gaps = 16/130 (12%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + F IL D PC+ +GV+RR+PDI WLRR +DI L+ ++L+NLW L GG+
Sbjct: 323 WWDGQPFQAILLDAPCSATGVIRRHPDIKWLRRADDIATLTATQQRLLDNLWPTLAVGGR 382
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRL-----NSP--------GQLLPTVNKKQDYD 127
LL+ TCS+ +E+ Q F H D+ L ++P Q LP + D
Sbjct: 383 LLYATCSVLTDENSAQIAAFLARHADARLLPIATADNPVAGVLEGCWQRLPGTAEG---D 439
Query: 128 GFFYSLFQKR 137
GFFY++ +K+
Sbjct: 440 GFFYAVMEKQ 449
>gi|218550564|ref|YP_002384355.1| 16S rRNA methyltransferase B [Escherichia fergusonii ATCC 35469]
gi|422807222|ref|ZP_16855652.1| ribosomal RNA small subunit methyltransferase B [Escherichia
fergusonii B253]
gi|254766861|sp|B7LRQ5.1|RSMB_ESCF3 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|218358105|emb|CAQ90752.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia
fergusonii ATCC 35469]
gi|324111967|gb|EGC05946.1| ribosomal RNA small subunit methyltransferase B [Escherichia
fergusonii B253]
Length = 429
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGILIYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|386289392|ref|ZP_10066522.1| 16S rRNA methyltransferase B [gamma proteobacterium BDW918]
gi|385277455|gb|EIF41437.1| 16S rRNA methyltransferase B [gamma proteobacterium BDW918]
Length = 431
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 47/127 (37%), Positives = 69/127 (54%), Gaps = 13/127 (10%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ +FDRIL D PC+ GV+RRNPDI R +DI L + +L++LW+ L PGG
Sbjct: 307 WWDGSHFDRILLDAPCSAVGVIRRNPDIKLNRMVSDIAPLCRLQASLLDSLWQCLSPGGL 366
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDS----------IRLNSPGQLLPTVNKKQDYDGFF 130
++ TCSL E+EEQ F + + + QL P + Q +DGFF
Sbjct: 367 FVYATCSLLPAENEEQISAFLSREPSAELVPLDVSWGVDRSGCRQLFP---QDQGHDGFF 423
Query: 131 YSLFQKR 137
Y+L +K+
Sbjct: 424 YALLRKK 430
>gi|381395654|ref|ZP_09921349.1| ribosomal RNA small subunit methyltransferase B [Glaciecola punicea
DSM 14233 = ACAM 611]
gi|379328533|dbj|GAB56482.1| ribosomal RNA small subunit methyltransferase B [Glaciecola punicea
DSM 14233 = ACAM 611]
Length = 462
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 48/119 (40%), Positives = 68/119 (57%), Gaps = 12/119 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+R++PDI WLR+ NDI L +IL + W+ LK GG L++ TC
Sbjct: 346 FDRILLDAPCSATGVIRKHPDIMWLRKPNDINVLVDLQKQILASAWQTLKSGGTLVYATC 405
Query: 87 SLWFEESEEQAIIFSKNHKDSI---------RLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
S+ +E+ +Q F H D+ S Q+LP + D DGFFY+ +K
Sbjct: 406 SILPQENIQQIEDFLATHNDATLEPITTHKNETLSNWQILP---GQDDMDGFFYAKLRK 461
>gi|329894840|ref|ZP_08270640.1| Ribosomal RNA small subunit methyltransferase B [gamma
proteobacterium IMCC3088]
gi|328922734|gb|EGG30068.1| Ribosomal RNA small subunit methyltransferase B [gamma
proteobacterium IMCC3088]
Length = 425
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 50/120 (41%), Positives = 67/120 (55%), Gaps = 13/120 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FD ILAD+PC+GSGVVRR+PDI LR +D+ + +IL NLW LKPGG LL+VTC
Sbjct: 308 FDHILADVPCSGSGVVRRHPDIKTLRLASDLAQFHAQQLQILQNLWPKLKPGGTLLYVTC 367
Query: 87 SLW----------FEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
S++ F + E QA I + N QL+P ++ DG ++ QK
Sbjct: 368 SIFEQENDQTIRLFLQQETQASIQAINKSWGYATEFGRQLIP---QRDGSDGLYFCRVQK 424
>gi|83642941|ref|YP_431376.1| sun protein [Hahella chejuensis KCTC 2396]
gi|83630984|gb|ABC26951.1| sun protein [Hahella chejuensis KCTC 2396]
Length = 447
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 50/121 (41%), Positives = 69/121 (57%), Gaps = 13/121 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI LRR DI +L++ K+L LW LKP G L++ TC
Sbjct: 320 FDRILLDAPCSATGVIRRHPDIKLLRRSEDIPQLAELQLKLLRTLWTTLKPEGLLVYATC 379
Query: 87 SLWFEESEEQAIIFSKNHKDS--------IRLNSPG--QLLPTVNKKQDYDGFFYSLFQK 136
S+ EE+E F + D+ + SP QLLP +DGFFY+ +K
Sbjct: 380 SILKEENEHIIERFIADATDAEVIPIEGKYGIQSPFGVQLLPVTG---GHDGFFYARLRK 436
Query: 137 R 137
+
Sbjct: 437 Q 437
>gi|419138550|ref|ZP_13683340.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC5E]
gi|377980674|gb|EHV43934.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
DEC5E]
Length = 429
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENGLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|417691632|ref|ZP_12340841.1| ribosomal RNA small subunit methyltransferase B [Shigella boydii
5216-82]
gi|332085437|gb|EGI90603.1| ribosomal RNA small subunit methyltransferase B [Shigella boydii
5216-82]
Length = 429
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 48/122 (39%), Positives = 68/122 (55%), Gaps = 19/122 (15%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GVVRR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVVRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----------RLNSPGQLLPTVNKKQDYDGFFYSLFQ 135
S+ EE+ Q F + D+ + N PG ++ DGFFY+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNQPG--------AEEGDGFFYAKLI 427
Query: 136 KR 137
K+
Sbjct: 428 KK 429
>gi|381150291|ref|ZP_09862160.1| ribosomal RNA small subunit methyltransferase RsmB
[Methylomicrobium album BG8]
gi|380882263|gb|EIC28140.1| ribosomal RNA small subunit methyltransferase RsmB
[Methylomicrobium album BG8]
Length = 428
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 49/126 (38%), Positives = 70/126 (55%), Gaps = 13/126 (10%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRIL D PC+ GV+RR+PDI LRR DI+ L+ IL+ W +L PGG
Sbjct: 305 WWDGRQFDRILVDAPCSALGVIRRHPDIKLLRRAGDIEPLAALQRAILDAAWSLLAPGGC 364
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIR---------LNSPG-QLLPTVNKKQDYDGFF 130
LL+ TCS+ EE+E + + F H D+I + G Q+LP DGF+
Sbjct: 365 LLYATCSVLKEENERRIVDFLAGHPDAIEWPITAEWGAARAAGRQILP---GDLAMDGFY 421
Query: 131 YSLFQK 136
Y+ +K
Sbjct: 422 YARLRK 427
>gi|417719193|ref|ZP_12368082.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
K-227]
gi|333014516|gb|EGK33864.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
K-227]
Length = 454
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 47/122 (38%), Positives = 68/122 (55%), Gaps = 19/122 (15%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 341 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 400
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----------RLNSPGQLLPTVNKKQDYDGFFYSLFQ 135
S+ EE+ Q F + D+ + N PG ++ DGFFY+
Sbjct: 401 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNQPG--------AEEGDGFFYAKLI 452
Query: 136 KR 137
K+
Sbjct: 453 KK 454
>gi|430759748|ref|YP_007215605.1| Ribosomal RNA small subunit methyltransferase B [Thioalkalivibrio
nitratireducens DSM 14787]
gi|430009372|gb|AGA32124.1| Ribosomal RNA small subunit methyltransferase B [Thioalkalivibrio
nitratireducens DSM 14787]
Length = 410
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 72/123 (58%), Gaps = 7/123 (5%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FD IL D+PC+ +GV+RR+PDI LRR DI L+ ++L W++L+PGG+
Sbjct: 286 WWDGRPFDAILLDVPCSATGVIRRHPDIKLLRRAADIPALAARQRELLAQAWRLLRPGGR 345
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDS--IRLNSPGQLLPTVNK-----KQDYDGFFYSL 133
LL+VTCSL +E+E + D+ + L PG V + +D DGF+++L
Sbjct: 346 LLYVTCSLLADENERVVGSWLAATPDAKPLPLAFPGGDDRPVGRAVALGAEDMDGFYFAL 405
Query: 134 FQK 136
+
Sbjct: 406 LGR 408
>gi|417127397|ref|ZP_11974888.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
97.0246]
gi|386144700|gb|EIG91166.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
97.0246]
Length = 429
Score = 90.9 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 48/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ ++L+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEMLDAIWPHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|384085891|ref|ZP_09997066.1| 16S rRNA methyltransferase B [Acidithiobacillus thiooxidans ATCC
19377]
Length = 432
Score = 90.9 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 48/118 (40%), Positives = 70/118 (59%), Gaps = 5/118 (4%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + +D IL D PCTG GV+RR+PDI R+ D+++ ++L LW L+PGG+
Sbjct: 316 WWNGEPYDAILLDAPCTGVGVIRRHPDIRLRRQAEDVQQAVAQQQRLLEALWGCLRPGGR 375
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSP--GQLLPTVNKKQDYDGFFYSLFQK 136
LL+ TCS+ EE+ Q F H+D+ + P GQ LP N D DGF+Y+L K
Sbjct: 376 LLYATCSILPEENLLQIRAFLARHEDARQQAHPLTGQHLPGQN---DMDGFYYALLVK 430
>gi|444920397|ref|ZP_21240240.1| Ribosomal RNA small subunit methyltransferase B [Wohlfahrtiimonas
chitiniclastica SH04]
gi|444508716|gb|ELV08885.1| Ribosomal RNA small subunit methyltransferase B [Wohlfahrtiimonas
chitiniclastica SH04]
Length = 509
Score = 90.9 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 50/132 (37%), Positives = 77/132 (58%), Gaps = 12/132 (9%)
Query: 17 NRFR-FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKML 75
N F F ++ D IL D+PC+ +G++ R+PDI LR+ DI L++ +L++ W ML
Sbjct: 375 NHFENFTADEAVDAILLDVPCSATGIIHRHPDIKRLRQPTDIAVLAQTQADLLDHAWAML 434
Query: 76 KPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS--IRLNSP--------GQLLPTVNKK-Q 124
K GG+LL+ TCS+ EE+E Q F HKD+ L+ P Q+LP +++ +
Sbjct: 435 KVGGRLLYSTCSILKEENEGQMQAFFAAHKDAKECELSLPFAEREAYGYQILPVFSEQAE 494
Query: 125 DYDGFFYSLFQK 136
DGF+Y L +K
Sbjct: 495 KMDGFYYCLIEK 506
>gi|417709370|ref|ZP_12358393.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
VA-6]
gi|332998302|gb|EGK17903.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
VA-6]
Length = 420
Score = 90.9 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 47/122 (38%), Positives = 68/122 (55%), Gaps = 19/122 (15%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 307 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 366
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----------RLNSPGQLLPTVNKKQDYDGFFYSLFQ 135
S+ EE+ Q F + D+ + N PG ++ DGFFY+
Sbjct: 367 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNQPG--------AEEGDGFFYAKLI 418
Query: 136 KR 137
K+
Sbjct: 419 KK 420
>gi|417735362|ref|ZP_12384007.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
2747-71]
gi|420375832|ref|ZP_14875655.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
1235-66]
gi|332754010|gb|EGJ84383.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
2747-71]
gi|391309266|gb|EIQ66942.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
1235-66]
Length = 420
Score = 90.9 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 47/122 (38%), Positives = 68/122 (55%), Gaps = 19/122 (15%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 307 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 366
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----------RLNSPGQLLPTVNKKQDYDGFFYSLFQ 135
S+ EE+ Q F + D+ + N PG ++ DGFFY+
Sbjct: 367 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNQPG--------AEEGDGFFYAKLI 418
Query: 136 KR 137
K+
Sbjct: 419 KK 420
>gi|408418942|ref|YP_006760356.1| ribosomal RNA small subunit methyltransferase B RsmB [Desulfobacula
toluolica Tol2]
gi|405106155|emb|CCK79652.1| RsmB: ribosomal RNA small subunit methyltransferase B
[Desulfobacula toluolica Tol2]
Length = 452
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 68/123 (55%), Gaps = 11/123 (8%)
Query: 26 YFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 85
YFDR+L D PCTG GV+RRNPD W R KNDI +L+ K+LN ++KPGG L++
Sbjct: 327 YFDRVLIDAPCTGLGVLRRNPDAKWKRSKNDIARLAAKQKKMLNAAANLVKPGGILVYAV 386
Query: 86 CSLWFEESEEQAIIFSKNHKD-SI----------RLNSPGQLLPTVNKKQDYDGFFYSLF 134
CS EE+EE F KD SI RL + + L T + DGFF +
Sbjct: 387 CSCEREENEEVIHTFLNKRKDFSIDTHFKSNKYSRLMTRDKFLKTYPDTNNMDGFFAARL 446
Query: 135 QKR 137
+++
Sbjct: 447 KRK 449
>gi|284006133|emb|CBA71374.1| 16S rRNA methyltransferase B [Arsenophonus nasoniae]
Length = 426
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 69/109 (63%), Gaps = 6/109 (5%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR+ DI +L K KIL +W LK G L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRKPIDIPQLVKLQYKILEAIWPYLKTNGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS---PGQLLPTVNKKQDYDGFFYS 132
S+ +E++EQ F +H ++ N+ Q+LPT ++ DGFFY+
Sbjct: 376 SILPDENKEQIKKFLFHHPEASLNNNMELGQQILPT---QRGGDGFFYA 421
>gi|383311412|ref|YP_005364222.1| ribosomal RNA small subunit methyltransferase B [Pasteurella
multocida subsp. multocida str. HN06]
gi|386835435|ref|YP_006240754.1| ribosomal RNA small subunit methyltransferase B [Pasteurella
multocida subsp. multocida str. 3480]
gi|380872684|gb|AFF25051.1| ribosomal RNA small subunit methyltransferase B [Pasteurella
multocida subsp. multocida str. HN06]
gi|385202140|gb|AFI46995.1| ribosomal RNA small subunit methyltransferase B [Pasteurella
multocida subsp. multocida str. 3480]
Length = 446
Score = 90.5 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 51/119 (42%), Positives = 66/119 (55%), Gaps = 12/119 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR+ +DI L +IL LW +LKP G LL+ TC
Sbjct: 328 FDRILLDAPCSATGVIRRHPDIKWLRQASDISALVALQKQILQALWTVLKPNGILLYATC 387
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSP---------GQLLPTVNKKQDYDGFFYSLFQK 136
S+ EE+ Q F N+ D+ P Q LPT N DGF+Y +K
Sbjct: 388 SVLPEENVLQIEQFLTNNVDAKLEPLPFTAVEGAVGYQFLPTENGG---DGFYYVKLRK 443
>gi|297526431|ref|YP_003668455.1| Fmu (Sun) domain-containing protein [Staphylothermus hellenicus DSM
12710]
gi|297255347|gb|ADI31556.1| Fmu (Sun) domain protein [Staphylothermus hellenicus DSM 12710]
Length = 449
Score = 90.5 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 48/121 (39%), Positives = 70/121 (57%), Gaps = 8/121 (6%)
Query: 25 KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 84
K DR+L D PC+ G + +NPD+ W R+ I +L K ++L WK+LKPGGKLL+
Sbjct: 327 KIADRVLLDAPCSSDGTIMKNPDLRWRLREEKIAELQKLQYEMLEAGWKLLKPGGKLLYC 386
Query: 85 TCSLWFEESEEQAIIFSKNHKDS--IRLNSPGQ--LLPTVNK----KQDYDGFFYSLFQK 136
TCS+ EE+E F + H+D+ I LN P LP + + + GFFY+L +K
Sbjct: 387 TCSMLLEENEHIIEKFLRKHRDAEIIPLNKPYDPGFLPGTMRAWPHRHETIGFFYALLKK 446
Query: 137 R 137
+
Sbjct: 447 K 447
>gi|387812477|ref|YP_005427954.1| 16S rRNA m5C967 methyltransferase [Marinobacter
hydrocarbonoclasticus ATCC 49840]
gi|381337484|emb|CCG93531.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Marinobacter
hydrocarbonoclasticus ATCC 49840]
Length = 433
Score = 90.5 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 44/120 (36%), Positives = 71/120 (59%), Gaps = 13/120 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D+PC+ +GV+RR+PDI LRR++DI L+ +L +W +LKPGG+L++ TC
Sbjct: 314 FDRILLDVPCSATGVIRRHPDIKLLRRESDIVPLASIQLGLLEAMWSILKPGGRLVYATC 373
Query: 87 SLW----------FEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
S++ F + + QA + + + + + QL P +DGFFY++ +K
Sbjct: 374 SVFPQENHRIIQRFLKQQNQATLKTIDADWGRDMTTGRQLFP---DPDSHDGFFYAVLEK 430
>gi|388455534|ref|ZP_10137829.1| 16S rRNA methyltransferase B [Fluoribacter dumoffii Tex-KL]
Length = 428
Score = 90.5 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 47/129 (36%), Positives = 71/129 (55%), Gaps = 13/129 (10%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRIL D PC+ +GV+RR+ DI LR +I K+ ++L LW +L GG
Sbjct: 303 WWDGQPFDRILLDAPCSATGVIRRHSDIKLLRNDEEIDKIIHIQQEMLECLWALLAKGGL 362
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSP----------GQLLPTVNKKQDYDGFF 130
L++ TCS+ EE+E+Q F NH D + P Q+LP +Q DGFF
Sbjct: 363 LVYATCSVMSEENEQQIAHFVANHPDCTIIKEPWAWGRATEHGQQILP---GEQSMDGFF 419
Query: 131 YSLFQKRKE 139
Y++ K ++
Sbjct: 420 YAVLLKDRK 428
>gi|194435072|ref|ZP_03067310.1| ribosomal RNA small subunit methyltransferase B [Shigella
dysenteriae 1012]
gi|416278429|ref|ZP_11644586.1| Ribosomal RNA small subunit methyltransferase B [Shigella boydii
ATCC 9905]
gi|417674257|ref|ZP_12323692.1| ribosomal RNA small subunit methyltransferase B [Shigella
dysenteriae 155-74]
gi|194416679|gb|EDX32810.1| ribosomal RNA small subunit methyltransferase B [Shigella
dysenteriae 1012]
gi|320182714|gb|EFW57600.1| Ribosomal RNA small subunit methyltransferase B [Shigella boydii
ATCC 9905]
gi|332086286|gb|EGI91442.1| ribosomal RNA small subunit methyltransferase B [Shigella
dysenteriae 155-74]
Length = 429
Score = 90.5 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 47/122 (38%), Positives = 68/122 (55%), Gaps = 19/122 (15%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----------RLNSPGQLLPTVNKKQDYDGFFYSLFQ 135
S+ EE+ Q F + D+ + N PG ++ DGFFY+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNQPG--------AEEGDGFFYAKLI 427
Query: 136 KR 137
K+
Sbjct: 428 KK 429
>gi|417715254|ref|ZP_12364198.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
K-272]
gi|332996759|gb|EGK16384.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
K-272]
Length = 429
Score = 90.5 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 47/122 (38%), Positives = 68/122 (55%), Gaps = 19/122 (15%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----------RLNSPGQLLPTVNKKQDYDGFFYSLFQ 135
S+ EE+ Q F + D+ + N PG ++ DGFFY+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNQPG--------AEEGDGFFYAKLI 427
Query: 136 KR 137
K+
Sbjct: 428 KK 429
>gi|384544870|ref|YP_005728934.1| Ribosomal RNA small subunit methyltransferase B [Shigella flexneri
2002017]
gi|281602657|gb|ADA75641.1| Ribosomal RNA small subunit methyltransferase B [Shigella flexneri
2002017]
Length = 436
Score = 90.5 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 47/122 (38%), Positives = 68/122 (55%), Gaps = 19/122 (15%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 323 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 382
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----------RLNSPGQLLPTVNKKQDYDGFFYSLFQ 135
S+ EE+ Q F + D+ + N PG ++ DGFFY+
Sbjct: 383 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNQPG--------AEEGDGFFYAKLI 434
Query: 136 KR 137
K+
Sbjct: 435 KK 436
>gi|417829794|ref|ZP_12476337.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
J1713]
gi|420322256|ref|ZP_14824079.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
2850-71]
gi|420334096|ref|ZP_14835724.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
K-1770]
gi|224493306|sp|Q0T014.2|RSMB_SHIF8 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|335573686|gb|EGM60030.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
J1713]
gi|391243141|gb|EIQ02437.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
K-1770]
gi|391246046|gb|EIQ05310.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
2850-71]
Length = 429
Score = 90.5 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 47/116 (40%), Positives = 69/116 (59%), Gaps = 7/116 (6%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDS--IRLNSPGQLLPTVNKK---QDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ +P Q P + ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQ--PGKQNQPGAEEGDGFFYAKLIKK 429
>gi|30064610|ref|NP_838781.1| 16S rRNA methyltransferase B [Shigella flexneri 2a str. 2457T]
gi|56480310|ref|NP_709076.2| 16S rRNA methyltransferase GidB [Shigella flexneri 2a str. 301]
gi|415857092|ref|ZP_11531921.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
2a str. 2457T]
gi|417704344|ref|ZP_12353442.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
K-218]
gi|417725774|ref|ZP_12374553.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
K-304]
gi|417731220|ref|ZP_12379899.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
K-671]
gi|417741099|ref|ZP_12389663.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
4343-70]
gi|417743803|ref|ZP_12392332.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
2930-71]
gi|418252661|ref|ZP_12878214.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
6603-63]
gi|420344663|ref|ZP_14846119.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
K-404]
gi|46396790|sp|Q7UBD3.1|RSMB_SHIFL RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|30042869|gb|AAP18592.1| hypothetical protein S3545 [Shigella flexneri 2a str. 2457T]
gi|56383861|gb|AAN44783.2| conserved hypothetical protein [Shigella flexneri 2a str. 301]
gi|313648789|gb|EFS13229.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
2a str. 2457T]
gi|332749603|gb|EGJ80020.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
K-671]
gi|332749746|gb|EGJ80161.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
4343-70]
gi|332766528|gb|EGJ96735.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
2930-71]
gi|332998314|gb|EGK17914.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
K-218]
gi|333012367|gb|EGK31748.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
K-304]
gi|391261348|gb|EIQ20397.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
K-404]
gi|397902163|gb|EJL18492.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
6603-63]
Length = 429
Score = 90.5 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 47/116 (40%), Positives = 69/116 (59%), Gaps = 7/116 (6%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDS--IRLNSPGQLLPTVNKK---QDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ +P Q P + ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQ--PGKQNQPGAEEGDGFFYAKLIKK 429
>gi|110807136|ref|YP_690656.1| 16S rRNA methyltransferase GidB [Shigella flexneri 5 str. 8401]
gi|424839521|ref|ZP_18264158.1| 16S rRNA methyltransferase B [Shigella flexneri 5a str. M90T]
gi|110616684|gb|ABF05351.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
gi|383468573|gb|EID63594.1| 16S rRNA methyltransferase B [Shigella flexneri 5a str. M90T]
Length = 436
Score = 90.5 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 47/122 (38%), Positives = 68/122 (55%), Gaps = 19/122 (15%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 323 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 382
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----------RLNSPGQLLPTVNKKQDYDGFFYSLFQ 135
S+ EE+ Q F + D+ + N PG ++ DGFFY+
Sbjct: 383 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNQPG--------AEEGDGFFYAKLI 434
Query: 136 KR 137
K+
Sbjct: 435 KK 436
>gi|400287035|ref|ZP_10789067.1| hypothetical protein PPAM21_03101 [Psychrobacter sp. PAMC 21119]
Length = 535
Score = 90.5 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 55/138 (39%), Positives = 75/138 (54%), Gaps = 21/138 (15%)
Query: 18 RFRFYKNK-------YFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNN 70
R++ KNK FD IL D PCT +GV+RR+PDI LR + DI++ + IL+N
Sbjct: 399 RWQHGKNKKAATNEPVFDAILLDSPCTATGVIRRHPDISILRTEEDIEQTALLQADILHN 458
Query: 71 LWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLN-----SPG-------QLLP 118
LW LK GG LL+VTCS+ +E+ EQ F +H D++ + S G Q LP
Sbjct: 459 LWPQLKAGGYLLYVTCSILKQENVEQMQDFITHHNDAVAIEFTDDCSWGIEQAIGRQCLP 518
Query: 119 TVNKKQDYDGFFYSLFQK 136
DGF+Y+L K
Sbjct: 519 I--DSASGDGFYYALLMK 534
>gi|420349248|ref|ZP_14850628.1| ribosomal RNA small subunit methyltransferase B [Shigella boydii
965-58]
gi|391266855|gb|EIQ25801.1| ribosomal RNA small subunit methyltransferase B [Shigella boydii
965-58]
Length = 429
Score = 90.5 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 47/122 (38%), Positives = 68/122 (55%), Gaps = 19/122 (15%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----------RLNSPGQLLPTVNKKQDYDGFFYSLFQ 135
S+ EE+ Q F + D+ + N PG ++ DGFFY+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNQPG--------AEEGDGFFYAKLI 427
Query: 136 KR 137
K+
Sbjct: 428 KK 429
>gi|358013215|ref|ZP_09145025.1| 16S rRNA methyltransferase B [Acinetobacter sp. P8-3-8]
Length = 435
Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 48/123 (39%), Positives = 68/123 (55%), Gaps = 13/123 (10%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
N+ D I+ D PC+ GV+RR+PDI LR+ DI+K +ILN +W+ LK GG LL+
Sbjct: 314 NEPVDCIILDAPCSAIGVMRRHPDIRLLRQSTDIQKTVDLQKQILNQMWQQLKVGGTLLY 373
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSIRLNSPG----------QLLPTVNKKQDYDGFFYSL 133
+TCS+ E+E+Q + F H D+ + QLLP N+ DGF+Y
Sbjct: 374 ITCSILKVENEQQMVSFFAEHPDAAEVKIDASWGIEQIHGRQLLPKPNRG---DGFYYCR 430
Query: 134 FQK 136
QK
Sbjct: 431 IQK 433
>gi|383936055|ref|ZP_09989485.1| ribosomal RNA small subunit methyltransferase B [Rheinheimera
nanhaiensis E407-8]
gi|383702811|dbj|GAB59576.1| ribosomal RNA small subunit methyltransferase B [Rheinheimera
nanhaiensis E407-8]
Length = 438
Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 48/118 (40%), Positives = 75/118 (63%), Gaps = 7/118 (5%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+++ + +DRIL D+PC+ +GV+RR+PDI WLR+ DI L + +IL W++L PGG
Sbjct: 310 WWQGQLYDRILLDVPCSATGVIRRHPDIRWLRKNTDIAPLCQLQQQILQQCWRLLAPGGV 369
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS-PGQLLPTVN-----KKQDYDGFFYS 132
LL+ TCS+ +E+ Q F +++ D+ RL+ P Q TV +QD DGF+Y+
Sbjct: 370 LLYATCSVLPDENSAQITHFLQHNADA-RLDPLPQQNAGTVGWQLLPGEQDLDGFYYA 426
>gi|407693959|ref|YP_006818747.1| ribosomal RNA small subunit methyltransferase B [Alcanivorax
dieselolei B5]
gi|407251297|gb|AFT68404.1| Ribosomal RNA small subunit methyltransferase B [Alcanivorax
dieselolei B5]
Length = 434
Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 43/121 (35%), Positives = 70/121 (57%), Gaps = 15/121 (12%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FD IL D PC+ +G++RR PD+ W RR+ D+ L ++L+ LW +L+PGG L++ TC
Sbjct: 315 FDAILLDAPCSATGILRRQPDVKWHRRRQDLPALVDLQARMLDALWPLLRPGGTLVYATC 374
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPG-----------QLLPTVNKKQDYDGFFYSLFQ 135
S+ E+++Q F + +D+ ++PG QLLP + Q DGF+ + +
Sbjct: 375 SVLRAENDQQISAFLERTEDATE-DTPGIGAASPAARGWQLLP---RDQGPDGFYLARLR 430
Query: 136 K 136
K
Sbjct: 431 K 431
>gi|302877269|ref|YP_003845833.1| sun protein [Gallionella capsiferriformans ES-2]
gi|302580058|gb|ADL54069.1| sun protein [Gallionella capsiferriformans ES-2]
Length = 421
Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 50/119 (42%), Positives = 77/119 (64%), Gaps = 7/119 (5%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + F+RILAD+PC+ +GVVRR+PDI WLRRK D+ ++ +ILN LW +L PGG
Sbjct: 305 WWDGRLFERILADVPCSATGVVRRHPDIKWLRRKKDLASFAEQQFEILNALWPLLAPGGL 364
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS---PGQLLPTVNKKQDYDGFFYSLFQK 136
LL+ TCS++ +E+++ F + + ++ G LLP ++DGFFY+L QK
Sbjct: 365 LLYATCSVFKQENQQVVDKFLAQTPAAQQRDTGLPGGMLLP----DDEHDGFFYALLQK 419
>gi|402306313|ref|ZP_10825361.1| ribosomal RNA small subunit methyltransferase B [Haemophilus
sputorum HK 2154]
gi|400375219|gb|EJP28127.1| ribosomal RNA small subunit methyltransferase B [Haemophilus
sputorum HK 2154]
Length = 433
Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 46/119 (38%), Positives = 67/119 (56%), Gaps = 11/119 (9%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR+++DI L+ +IL+ LW LKP G LL+ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRQESDIPALAALQAQILSALWARLKPNGVLLYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDS--------IRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
S+ E+ EQ F + ++ + Q P + + DGFFY+ K+
Sbjct: 376 SILPSENREQIERFVAENANAQLTEMDFHTEKTAMKQFFP---QNEGGDGFFYAKLTKQ 431
>gi|93007290|ref|YP_581727.1| hypothetical protein Pcryo_2466 [Psychrobacter cryohalolentis K5]
gi|92394968|gb|ABE76243.1| Fmu (Sun) [Psychrobacter cryohalolentis K5]
Length = 524
Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 52/125 (41%), Positives = 69/125 (55%), Gaps = 14/125 (11%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FD IL D PCT +GV+RR+PDI LR + D+++ + IL+NLW LK GG LL+VTC
Sbjct: 402 FDAILLDSPCTATGVIRRHPDISILRTEEDVEQTALLQADILHNLWPQLKVGGYLLYVTC 461
Query: 87 SLWFEESEEQ------------AIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLF 134
S+ +E+ EQ A+ FS I Q LP +K DGF+Y+L
Sbjct: 462 SILKQENVEQMQDFMTHYNNVAAVEFSDGCNWGIEQAIGRQCLPIDSKSG--DGFYYALL 519
Query: 135 QKRKE 139
QK E
Sbjct: 520 QKTAE 524
>gi|325913845|ref|ZP_08176204.1| NOL1/NOP2/sun family protein [Xanthomonas vesicatoria ATCC 35937]
gi|325539920|gb|EGD11557.1| NOL1/NOP2/sun family protein [Xanthomonas vesicatoria ATCC 35937]
Length = 199
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 66/123 (53%), Gaps = 13/123 (10%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
+ FD +L D PC+ +GVVRR PD+ RR +DI L ++L+ W+ L+PGG+LL+
Sbjct: 78 GQPFDAVLLDAPCSATGVVRRQPDVLLHRRADDIAALCALQARLLDASWRTLRPGGQLLY 137
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSI---------RLNSPG-QLLPTVNKKQDYDGFFYSL 133
TCSL E++ Q F + D+ + PG Q P +Q DGFFY+L
Sbjct: 138 TTCSLLARENQAQVEAFLQRTPDAQAQPLGAAFGHVAGPGRQRFP---GEQHCDGFFYAL 194
Query: 134 FQK 136
K
Sbjct: 195 LLK 197
>gi|407009061|gb|EKE24285.1| Ribosomal RNA small subunit methyltransferase B [uncultured
bacterium]
Length = 171
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 71/140 (50%), Gaps = 13/140 (9%)
Query: 7 ESSDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCK 66
E +D+ + + + D I+ D PC+ GV+RR+PDI LR DI + +
Sbjct: 33 EYADVEIIAADAITWTAPESVDCIVLDAPCSAIGVIRRHPDIRLLRHSTDIPQTVHLQKQ 92
Query: 67 ILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPG----------QL 116
IL N+W+ LK GG LL++TCS+ E+E+Q + F H D+ + QL
Sbjct: 93 ILENMWQQLKVGGTLLYITCSILKAENEQQMVEFFAQHADAKEIKIEADWGIEQIHGRQL 152
Query: 117 LPTVNKKQDYDGFFYSLFQK 136
LP ++ DGFFY +K
Sbjct: 153 LPKADQG---DGFFYCRIEK 169
>gi|416293274|ref|ZP_11650385.1| Ribosomal RNA small subunit methyltransferase B [Shigella flexneri
CDC 796-83]
gi|420327470|ref|ZP_14829215.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
CCH060]
gi|320187010|gb|EFW61722.1| Ribosomal RNA small subunit methyltransferase B [Shigella flexneri
CDC 796-83]
gi|391248232|gb|EIQ07476.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
CCH060]
Length = 429
Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 48/117 (41%), Positives = 69/117 (58%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+R +PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRHHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|421663083|ref|ZP_16103237.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii OIFC110]
gi|408714111|gb|EKL59266.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii OIFC110]
Length = 434
Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 47/119 (39%), Positives = 69/119 (57%), Gaps = 13/119 (10%)
Query: 28 DRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 87
D I+ D PC+ +GV+RR+PDI LR+ +DI + ++ +IL ++W+ LK GG LL++TCS
Sbjct: 317 DCIVLDAPCSATGVIRRHPDIRLLRQSSDIAQTTELQKQILEHMWQQLKVGGTLLYITCS 376
Query: 88 LWFEESEEQAIIFSKNHKDS----------IRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
+ E+E+Q I F H D+ I QLLP + Q DGF+Y QK
Sbjct: 377 ILKSENEQQMINFFTEHTDAKEVKIEADWGIEQTYGRQLLP---EAQSGDGFYYCKIQK 432
>gi|187732355|ref|YP_001881972.1| 16S rRNA methyltransferase B [Shigella boydii CDC 3083-94]
gi|224493269|sp|B2U2Q6.1|RSMB_SHIB3 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|187429347|gb|ACD08621.1| ribosomal RNA small subunit methyltransferase B [Shigella boydii
CDC 3083-94]
Length = 429
Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 48/117 (41%), Positives = 69/117 (58%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+R +PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRHHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGAPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|424793184|ref|ZP_18219327.1| Ribosomal RNA small subunit methyltransferase B [Xanthomonas
translucens pv. graminis ART-Xtg29]
gi|422796745|gb|EKU25200.1| Ribosomal RNA small subunit methyltransferase B [Xanthomonas
translucens pv. graminis ART-Xtg29]
Length = 159
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 69/127 (54%), Gaps = 15/127 (11%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FD +L D PC+ +G+VRR PD+ RR+ D+ L ++L+ W++L+PGG
Sbjct: 35 WWDGEAFDAVLLDAPCSATGIVRRQPDVLLHRRREDVVALQALQARLLDAGWQVLRPGGV 94
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPG-----------QLLPTVNKKQDYDGF 129
L++ TCSL +E+ Q F D++ PG Q LP +QD DGF
Sbjct: 95 LVYATCSLLKDENARQLQAFLARTADAV-AEDPGAACGHADGGGRQRLP---GEQDRDGF 150
Query: 130 FYSLFQK 136
FY+ +K
Sbjct: 151 FYARLRK 157
>gi|408673320|ref|YP_006873068.1| Fmu (Sun) domain protein [Emticicia oligotrophica DSM 17448]
gi|387854944|gb|AFK03041.1| Fmu (Sun) domain protein [Emticicia oligotrophica DSM 17448]
Length = 401
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 78/138 (56%), Gaps = 16/138 (11%)
Query: 4 GEIESSDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKY 63
G +E+ I KT R R + DR+L D+PC+G GV+RRNPD W +K+ ++K+ +
Sbjct: 276 GNVETRLIEAKTIKRQR----ETADRLLLDVPCSGLGVLRRNPDAKWKLKKDFLEKIKQT 331
Query: 64 SCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD----SIRLNSPGQLLPT 119
+I+ N KMLK GGK+++ TCS+ ESEEQ F + D S + SP
Sbjct: 332 QAEIITNYSKMLKKGGKMVYATCSILPSESEEQVKKFLAQNPDFNFISEKRTSPA----- 386
Query: 120 VNKKQDYDGFFYSLFQKR 137
K +DGF+ +L +++
Sbjct: 387 ---KDGFDGFYMALIERK 401
>gi|119503584|ref|ZP_01625667.1| sun protein [marine gamma proteobacterium HTCC2080]
gi|119460646|gb|EAW41738.1| sun protein [marine gamma proteobacterium HTCC2080]
Length = 438
Score = 89.4 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 49/125 (39%), Positives = 71/125 (56%), Gaps = 18/125 (14%)
Query: 25 KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 84
+ FD ILAD+PC+ +GV+RRNPDI R+ DI + IL LW ++KPGG+LL+V
Sbjct: 312 RQFDAILADVPCSATGVIRRNPDIKITRKAADIATFHQQQRDILEGLWPLVKPGGRLLYV 371
Query: 85 TCSLWFEESEEQAIIFSKNHK-----------DSIRLNSPG--QLLPTVNKKQDYDGFFY 131
TCSL E+E +I + + ++R N+ Q LPT+N DG ++
Sbjct: 372 TCSLL--EAENDNVIEAAQSQLPQCEVMPLAGGTLRFNTRFGLQTLPTLNNG---DGLYF 426
Query: 132 SLFQK 136
SL +K
Sbjct: 427 SLLKK 431
>gi|417625368|ref|ZP_12275659.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
STEC_H.1.8]
gi|345373432|gb|EGX05391.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
STEC_H.1.8]
Length = 429
Score = 89.4 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 48/117 (41%), Positives = 69/117 (58%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PD WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDSKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>gi|335424664|ref|ZP_08553668.1| 16S rRNA methyltransferase B [Salinisphaera shabanensis E1L3A]
gi|334888095|gb|EGM26401.1| 16S rRNA methyltransferase B [Salinisphaera shabanensis E1L3A]
Length = 443
Score = 89.4 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 46/134 (34%), Positives = 73/134 (54%), Gaps = 29/134 (21%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRIL D PC+G+GV+RR+PDI WLRR +DI +K +L+ LW+ L PGG+
Sbjct: 318 WWDGRAFDRILLDAPCSGTGVIRRHPDIKWLRRPDDIAAAAKRQNALLDGLWRTLAPGGR 377
Query: 81 LLFVTCSLWFEE--------------SEEQAII----FSKNHKDSIRLNSPGQLLPTVNK 122
L++ TCS+ E + EQ I F++ + I +PG
Sbjct: 378 LVYATCSILRAEGVDVIDAFLARTDDAREQVIDAHWGFAERYGRRI---APGM------- 427
Query: 123 KQDYDGFFYSLFQK 136
+DGF+Y++ ++
Sbjct: 428 -HGFDGFYYAVLER 440
>gi|148654179|ref|YP_001281272.1| Fmu (Sun) domain-containing protein [Psychrobacter sp. PRwf-1]
gi|148573263|gb|ABQ95322.1| Fmu (Sun) domain protein [Psychrobacter sp. PRwf-1]
Length = 528
Score = 89.4 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 40/84 (47%), Positives = 56/84 (66%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FD IL D PCT +GV+RR+PDI LR + D++ + +IL+NLW LK GG LL+VTC
Sbjct: 377 FDAILLDAPCTATGVIRRHPDITLLRNEEDVQHTVQLQEQILDNLWPQLKTGGYLLYVTC 436
Query: 87 SLWFEESEEQAIIFSKNHKDSIRL 110
S+ +E+ EQ F HKD++ +
Sbjct: 437 SILKQENVEQMQAFLSRHKDAVAI 460
>gi|433679683|ref|ZP_20511385.1| ribosomal RNA small subunit methyltransferase B [Xanthomonas
translucens pv. translucens DSM 18974]
gi|430815196|emb|CCP41989.1| ribosomal RNA small subunit methyltransferase B [Xanthomonas
translucens pv. translucens DSM 18974]
Length = 298
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 69/127 (54%), Gaps = 15/127 (11%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FD +L D PC+ +G+VRR PD+ RR+ D+ L ++L+ W++L+PGG
Sbjct: 174 WWDGEAFDAVLLDAPCSATGIVRRQPDVLLHRRREDVVALQALQARLLDAGWQVLRPGGV 233
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPG-----------QLLPTVNKKQDYDGF 129
L++ TCSL +E+ Q F D++ PG Q LP +QD DGF
Sbjct: 234 LVYATCSLLKDENARQLQAFLARTADAV-AEDPGAACGHADGSGRQRLP---GEQDRDGF 289
Query: 130 FYSLFQK 136
FY+ +K
Sbjct: 290 FYARLRK 296
>gi|416236287|ref|ZP_11630614.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella
catarrhalis 12P80B1]
gi|326563104|gb|EGE13377.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella
catarrhalis 12P80B1]
Length = 448
Score = 89.0 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 52/142 (36%), Positives = 79/142 (55%), Gaps = 10/142 (7%)
Query: 5 EIESSDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYS 64
++++ DI+ + + ++ FD IL D PCT +GV+RR+PDI LR++ DI
Sbjct: 304 KLDTKDISVVHADGTSWRSDRCFDVILLDAPCTATGVLRRHPDIGLLRQEQDIATTVNLQ 363
Query: 65 CKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS----IRLNSPGQLLPTV 120
IL+NLW LK GG LL+VTCS+ E+E Q I F + + D+ L+ P Q+ V
Sbjct: 364 RSILDNLWSRLKVGGVLLYVTCSILKAENERQIIDFLRANDDANAIPFDLSLPHQIKQQV 423
Query: 121 NKK------QDYDGFFYSLFQK 136
+ + DGF+Y+L K
Sbjct: 424 GYQCLPLDTKGGDGFYYALLTK 445
>gi|256823833|ref|YP_003147796.1| sun protein [Kangiella koreensis DSM 16069]
gi|256797372|gb|ACV28028.1| sun protein [Kangiella koreensis DSM 16069]
Length = 443
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 48/124 (38%), Positives = 74/124 (59%), Gaps = 9/124 (7%)
Query: 22 YKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKL 81
Y + +FD IL D PC+ +GV+RR+PDI LR +DI +L + +IL +LW LK GG+L
Sbjct: 317 YPDNHFDAILLDAPCSATGVIRRHPDIKLLRHASDIDQLVQLQQQILEHLWCKLKAGGRL 376
Query: 82 LFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQ---------DYDGFFYS 132
L+ TCS+ +E+E+Q F + HKD+ ++ Q+ + K DGF+Y+
Sbjct: 377 LYATCSILPQENEQQITHFLERHKDAKLVSLSEQIQNLSHTKTGCQLIPGQLSMDGFYYA 436
Query: 133 LFQK 136
L +K
Sbjct: 437 LLEK 440
>gi|71066692|ref|YP_265419.1| hypothetical protein Psyc_2138 [Psychrobacter arcticus 273-4]
gi|71039677|gb|AAZ19985.1| conserved hypothetical protein [Psychrobacter arcticus 273-4]
Length = 524
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 48/125 (38%), Positives = 69/125 (55%), Gaps = 14/125 (11%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FD IL D PCT +GV+RR+PDI LR + D+++ + IL+NLW LK GG LL+VTC
Sbjct: 402 FDAILLDSPCTATGVIRRHPDISILRTEEDVEQTALLQADILHNLWPQLKVGGYLLYVTC 461
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPG------------QLLPTVNKKQDYDGFFYSLF 134
S+ +E+ EQ F ++ D++ + Q LP + DGF+Y+L
Sbjct: 462 SILKQENVEQMQDFITHYSDAVAIEFSEDCNWGIAQAIGRQCLPI--DSESGDGFYYALL 519
Query: 135 QKRKE 139
K E
Sbjct: 520 HKTAE 524
>gi|289209431|ref|YP_003461497.1| sun protein [Thioalkalivibrio sp. K90mix]
gi|288945062|gb|ADC72761.1| sun protein [Thioalkalivibrio sp. K90mix]
Length = 451
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 48/129 (37%), Positives = 71/129 (55%), Gaps = 15/129 (11%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FD IL D+PC+ +GV+RR+PDI LRR +DI +L+ +IL W +L+PGG+
Sbjct: 324 WWDGRPFDAILLDVPCSATGVIRRHPDIKTLRRADDIPRLAAEQARILEAAWGLLRPGGR 383
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLN-------------SPGQLLPTVNKKQDYD 127
LL+ TCSL EE++ F + D+ L S G LP + D
Sbjct: 384 LLYATCSLLSEENDAVVAGFLERMPDARALEPEGGPPIAGAHARSVGWALPL--GLEGGD 441
Query: 128 GFFYSLFQK 136
GF+Y+L K
Sbjct: 442 GFYYALLTK 450
>gi|254515962|ref|ZP_05128022.1| ribosomal RNA small subunit methyltransferase B [gamma
proteobacterium NOR5-3]
gi|219675684|gb|EED32050.1| ribosomal RNA small subunit methyltransferase B [gamma
proteobacterium NOR5-3]
Length = 433
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 47/121 (38%), Positives = 69/121 (57%), Gaps = 13/121 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FD +L D+PC+ +GV+RR+PD+ LRR+ D + ILN LW +L PGG+LL+VTC
Sbjct: 316 FDAMLLDVPCSATGVIRRHPDVKVLRREEDAVSFAAQQRAILNGLWPLLAPGGRLLYVTC 375
Query: 87 SLWFEESEEQAIIFSKNHKD---------SIRLNSPG-QLLPTVNKKQDYDGFFYSLFQK 136
SL EE+ + F D S + + G QLLP V+ DG ++++ +K
Sbjct: 376 SLLPEENSQAVAEFLARQSDASEEALHVASAQACAQGLQLLPDVSGT---DGLYFAMLRK 432
Query: 137 R 137
R
Sbjct: 433 R 433
>gi|335041811|ref|ZP_08534838.1| tRNA and rRNA cytosine-C5-methylase [Methylophaga
aminisulfidivorans MP]
gi|333788425|gb|EGL54307.1| tRNA and rRNA cytosine-C5-methylase [Methylophaga
aminisulfidivorans MP]
Length = 437
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 46/124 (37%), Positives = 74/124 (59%), Gaps = 7/124 (5%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FDRIL D PCTGSGV+RR+PDI LR DI L+ +L+ LW +LK G
Sbjct: 314 WWNGQAFDRILIDAPCTGSGVIRRHPDIKLLRHPEDIDTLASKQQALLDKLWPLLKADGL 373
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDS--IRLNS-PGQLLPTVNKK----QDYDGFFYSL 133
+++ TCS + +E+E+Q F + H D+ ++L+S P P ++ DGF+Y+
Sbjct: 374 MVYTTCSAFKKENEQQIEAFLQRHPDAEEVKLSSTPATARPFGYQRLPGDDVMDGFYYAC 433
Query: 134 FQKR 137
+++
Sbjct: 434 LRRK 437
>gi|374292352|ref|YP_005039387.1| putative tRNA/rRNA cytosine-C5-methylase [Azospirillum lipoferum
4B]
gi|357424291|emb|CBS87158.1| putative tRNA/rRNA cytosine-C5-methylase [Azospirillum lipoferum
4B]
Length = 465
Score = 88.6 bits (218), Expect = 7e-16, Method: Composition-based stats.
Identities = 48/148 (32%), Positives = 78/148 (52%), Gaps = 15/148 (10%)
Query: 6 IESSDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSC 65
IE+ + + + + +K K FDR+L D PC+G+G RRNPD W + +++L
Sbjct: 290 IEAHPLTSERDPWVKRHKRK-FDRVLVDAPCSGTGTWRRNPDARWRQLGPGLEQLLPLQA 348
Query: 66 KILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSI-----------RLNSP- 113
IL++ +++KPGG+L++ TCS+ +E+E Q F + H D I +P
Sbjct: 349 NILDSAARLVKPGGRLIYATCSMLHDENEAQVEAFLQTHHDFIVKSVAEVWAEEEAGAPP 408
Query: 114 --GQLLPTVNKKQDYDGFFYSLFQKRKE 139
G L K D DGFF ++ ++R E
Sbjct: 409 VEGPYLRLTPAKHDTDGFFAAVLERRAE 436
>gi|325577101|ref|ZP_08147585.1| RNA methyltransferase Sun [Haemophilus parainfluenzae ATCC 33392]
gi|325160683|gb|EGC72804.1| RNA methyltransferase Sun [Haemophilus parainfluenzae ATCC 33392]
Length = 445
Score = 88.6 bits (218), Expect = 7e-16, Method: Composition-based stats.
Identities = 48/120 (40%), Positives = 67/120 (55%), Gaps = 12/120 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR++ DI +L +IL LW LKP G LL+ TC
Sbjct: 327 FDRILLDAPCSATGVIRRHPDIKWLRQETDIAQLVALQGQILKALWAKLKPNGILLYATC 386
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPG---------QLLPTVNKKQDYDGFFYSLFQKR 137
S+ +E+ +Q F ++ + P Q LP N DGF+Y+ +KR
Sbjct: 387 SVLPDENSQQIQRFLAETSNAELMPLPFEQTENTIGIQFLPQENGG---DGFYYAKLRKR 443
>gi|262370763|ref|ZP_06064087.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter
johnsonii SH046]
gi|262314125|gb|EEY95168.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter
johnsonii SH046]
Length = 434
Score = 88.6 bits (218), Expect = 7e-16, Method: Composition-based stats.
Identities = 47/119 (39%), Positives = 70/119 (58%), Gaps = 13/119 (10%)
Query: 28 DRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 87
D I+ D PC+ GV+RR+PDI LR+ DI K + +IL N+W+ LK GG LL++TCS
Sbjct: 318 DCIVLDAPCSAIGVIRRHPDIRLLRQSGDIAKTVQLQKQILENMWQQLKVGGTLLYITCS 377
Query: 88 LWFEESEEQAIIFSKNHKDS--IRLNSP--------GQLLPTVNKKQDYDGFFYSLFQK 136
+ E+E+Q + F H D+ I++++ QLLP V + DGF+Y +K
Sbjct: 378 ILKAENEQQMVDFFAEHTDAKEIKIDADWGIEQIHGRQLLPQVGRG---DGFYYCRIEK 433
>gi|345429248|ref|YP_004822366.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Haemophilus
parainfluenzae T3T1]
gi|301155309|emb|CBW14775.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Haemophilus
parainfluenzae T3T1]
Length = 445
Score = 88.6 bits (218), Expect = 7e-16, Method: Composition-based stats.
Identities = 48/120 (40%), Positives = 66/120 (55%), Gaps = 12/120 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR++ DI +L +IL LW LKP G LL+ TC
Sbjct: 327 FDRILLDAPCSATGVIRRHPDIKWLRQETDIAQLVALQGQILKALWAKLKPNGILLYATC 386
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPG---------QLLPTVNKKQDYDGFFYSLFQKR 137
S+ +E+ +Q D+ + P Q LP N DGF+Y+ +KR
Sbjct: 387 SVLPDENSQQIQHLLAETSDAELMPLPFEQTENTIGIQFLPQENGG---DGFYYAKLRKR 443
>gi|410664996|ref|YP_006917367.1| 16S rRNA methyltransferase B [Simiduia agarivorans SA1 = DSM 21679]
gi|409027353|gb|AFU99637.1| 16S rRNA methyltransferase B [Simiduia agarivorans SA1 = DSM 21679]
Length = 298
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 74/130 (56%), Gaps = 15/130 (11%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
+++ K F++IL D PC+ +GV+RR+PDI LR+ DI +L+ +I++ +W +L PGG
Sbjct: 173 QWWDGKPFNQILLDAPCSATGVIRRHPDIKLLRKPEDIARLAALQAQIIDAVWPLLAPGG 232
Query: 80 KLLFVTCSLWFEESEE--QAIIFSKNHKDSIRLNSPG---------QLLPTVNKKQDYDG 128
LL+ TCS+ E+ + QA + + +N+ G QLLP ++ DG
Sbjct: 233 YLLYATCSIMPAENTDLTQAFLARTPDAREVPINA-GWGLAQATGRQLLP---GPENTDG 288
Query: 129 FFYSLFQKRK 138
F+Y L KR
Sbjct: 289 FYYCLLTKRA 298
>gi|416245937|ref|ZP_11634830.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella
catarrhalis BC8]
gi|416250512|ref|ZP_11637298.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella
catarrhalis CO72]
gi|326571735|gb|EGE21748.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella
catarrhalis BC8]
gi|326574350|gb|EGE24293.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella
catarrhalis CO72]
Length = 448
Score = 88.6 bits (218), Expect = 7e-16, Method: Composition-based stats.
Identities = 52/142 (36%), Positives = 79/142 (55%), Gaps = 10/142 (7%)
Query: 5 EIESSDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYS 64
++++ DI+ + + ++ FD IL D PCT +GV+RR+PDI LR++ DI
Sbjct: 304 KLDTKDISVVHADGTSWRSDQCFDVILLDAPCTATGVLRRHPDIGLLRQEQDIATTVNLQ 363
Query: 65 CKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS----IRLNSPGQLLPTV 120
IL+NLW LK GG LL+VTCS+ E+E Q I F + + D+ L+ P Q+ V
Sbjct: 364 RSILDNLWSRLKVGGVLLYVTCSILKAENERQIIDFLRANDDANAIPFDLSLPHQIKQQV 423
Query: 121 NKK------QDYDGFFYSLFQK 136
+ + DGF+Y+L K
Sbjct: 424 GYQCLPLDTKGGDGFYYALLTK 445
>gi|421779038|ref|ZP_16215533.1| 16S rRNA SAM-dependent methyltransferase [Moraxella catarrhalis
RH4]
gi|407813816|gb|EKF84595.1| 16S rRNA SAM-dependent methyltransferase [Moraxella catarrhalis
RH4]
Length = 448
Score = 88.6 bits (218), Expect = 7e-16, Method: Composition-based stats.
Identities = 52/142 (36%), Positives = 79/142 (55%), Gaps = 10/142 (7%)
Query: 5 EIESSDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYS 64
++++ DI+ + + ++ FD IL D PCT +GV+RR+PDI LR++ DI
Sbjct: 304 KLDTKDISVVHADGTSWRSDQCFDVILLDAPCTATGVLRRHPDIGLLRQEQDIATTVNLQ 363
Query: 65 CKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS----IRLNSPGQLLPTV 120
IL+NLW LK GG LL+VTCS+ E+E Q I F + + D+ L+ P Q+ V
Sbjct: 364 RSILDNLWSRLKVGGVLLYVTCSILKAENERQIIDFLRANDDANAIPFDLSLPHQIKQQV 423
Query: 121 NKK------QDYDGFFYSLFQK 136
+ + DGF+Y+L K
Sbjct: 424 GYQCLPLDTKGGDGFYYALLTK 445
>gi|416156368|ref|ZP_11604500.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella
catarrhalis 101P30B1]
gi|416216272|ref|ZP_11623596.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella
catarrhalis 7169]
gi|416224792|ref|ZP_11626696.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella
catarrhalis 103P14B1]
gi|416237958|ref|ZP_11631313.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella
catarrhalis BC1]
gi|416241658|ref|ZP_11632886.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella
catarrhalis BC7]
gi|326561732|gb|EGE12067.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella
catarrhalis 7169]
gi|326562326|gb|EGE12652.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella
catarrhalis 103P14B1]
gi|326569046|gb|EGE19115.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella
catarrhalis BC1]
gi|326571810|gb|EGE21816.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella
catarrhalis BC7]
gi|326575530|gb|EGE25455.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella
catarrhalis 101P30B1]
Length = 448
Score = 88.6 bits (218), Expect = 7e-16, Method: Composition-based stats.
Identities = 52/142 (36%), Positives = 79/142 (55%), Gaps = 10/142 (7%)
Query: 5 EIESSDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYS 64
++++ DI+ + + ++ FD IL D PCT +GV+RR+PDI LR++ DI
Sbjct: 304 KLDTKDISVVHADGTSWRSDQCFDVILLDAPCTATGVLRRHPDIGLLRQEQDIATTVNLQ 363
Query: 65 CKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS----IRLNSPGQLLPTV 120
IL+NLW LK GG LL+VTCS+ E+E Q I F + + D+ L+ P Q+ V
Sbjct: 364 RSILDNLWSRLKVGGVLLYVTCSILKAENERQIIDFLRANDDANAIPFDLSLPHQIKQQV 423
Query: 121 NKK------QDYDGFFYSLFQK 136
+ + DGF+Y+L K
Sbjct: 424 GYQCLPLDTKGGDGFYYALLTK 445
>gi|406041029|ref|ZP_11048384.1| 16S rRNA methyltransferase B [Acinetobacter ursingii DSM 16037 =
CIP 107286]
Length = 434
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 46/123 (37%), Positives = 72/123 (58%), Gaps = 13/123 (10%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
N+ D I+ D PC+ +GV+RR+PDI LR+ +DI + + +IL NLW+ LK GG LL+
Sbjct: 313 NQALDCIVLDAPCSATGVIRRHPDIRLLRQSSDIAQTIELQKQILQNLWQQLKVGGTLLY 372
Query: 84 VTCSLWFEESEEQAIIFSKNHKDS--IRLNSP--------GQLLPTVNKKQDYDGFFYSL 133
+TCS+ E+E+Q + F H ++ I++ + QLLP + DGF+Y
Sbjct: 373 ITCSILKAENEQQMVTFFAEHANAEEIKIEATWGIEQIHGRQLLPVTGQG---DGFYYCK 429
Query: 134 FQK 136
+K
Sbjct: 430 IKK 432
>gi|352090155|ref|ZP_08954327.1| sun protein [Rhodanobacter sp. 2APBS1]
gi|351677533|gb|EHA60681.1| sun protein [Rhodanobacter sp. 2APBS1]
Length = 433
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 45/128 (35%), Positives = 73/128 (57%), Gaps = 13/128 (10%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++K + FDRIL D PC+ SGV+RR PD+ RR++DI + ++L+ LW +L PGG+
Sbjct: 309 WWKGRPFDRILLDAPCSASGVLRRRPDVRLHRRESDITAMHAQQRRLLSALWPLLAPGGR 368
Query: 81 LLFVTCSLWFEESEE--QAIIFSKNHKDSIRLNSPG--------QLLPTVNKKQDYDGFF 130
LL+VTCS+ E+E ++ ++ ++ P Q+LP D DG +
Sbjct: 369 LLYVTCSVLRAENEAIVGELLAAQTDAQALAFTLPAGQPAALGWQILP---GDGDLDGMY 425
Query: 131 YSLFQKRK 138
Y++ QK +
Sbjct: 426 YAVLQKSR 433
>gi|343518431|ref|ZP_08755423.1| ribosomal RNA small subunit methyltransferase B [Haemophilus
pittmaniae HK 85]
gi|343393719|gb|EGV06272.1| ribosomal RNA small subunit methyltransferase B [Haemophilus
pittmaniae HK 85]
Length = 445
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 47/121 (38%), Positives = 68/121 (56%), Gaps = 12/121 (9%)
Query: 25 KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 84
+ FDRIL D PC+ +GV+RR+PDI WLR++ DI +L +IL LW LKP G LL+
Sbjct: 325 QLFDRILLDAPCSATGVIRRHPDIKWLRQETDIAQLVALQGQILKALWAKLKPNGILLYA 384
Query: 85 TCSLWFEESEEQAIIFSKNHKDSIRLNSPG---------QLLPTVNKKQDYDGFFYSLFQ 135
TCS+ +E+ +Q F D+ + P Q LP ++ DGF+Y+ +
Sbjct: 385 TCSVLPDENSQQIQHFLTETPDAELMPLPFERTESAVGVQFLP---QEHGGDGFYYAKLR 441
Query: 136 K 136
K
Sbjct: 442 K 442
>gi|385799660|ref|YP_005836064.1| sun protein [Halanaerobium praevalens DSM 2228]
gi|309389024|gb|ADO76904.1| sun protein [Halanaerobium praevalens DSM 2228]
Length = 449
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 80/141 (56%), Gaps = 14/141 (9%)
Query: 10 DINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILN 69
+++ K + ++ NK +DRILADLPC+G G++ P+I W + +N I+K++K KILN
Sbjct: 305 NVSLKKADASKYQDNKKYDRILADLPCSGLGLIASKPEIKWDKNENIIEKMAKLQYKILN 364
Query: 70 NLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK--------------DSIRLNSPGQ 115
N LK GG+LL+ TC+L EE+++ K +K S+ L + +
Sbjct: 365 NNLNKLKSGGQLLYSTCTLAKEENQDLIKRILKENKAYKLIDLSSRLEKASSLNLETKDK 424
Query: 116 LLPTVNKKQDYDGFFYSLFQK 136
L + + D +GFFY+L QK
Sbjct: 425 YLEILPGEVDSEGFFYALIQK 445
>gi|126465287|ref|YP_001040396.1| Fmu (Sun) domain-containing protein [Staphylothermus marinus F1]
gi|126014110|gb|ABN69488.1| Fmu (Sun) domain protein [Staphylothermus marinus F1]
Length = 449
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 68/119 (57%), Gaps = 8/119 (6%)
Query: 28 DRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 87
DR+L D PC+ G + +NPD+ W R+ I +L K ++L WK+LKPGGKLL+ TCS
Sbjct: 330 DRVLLDAPCSSDGTIMKNPDLRWRLREEKISELQKLQYEMLEAGWKLLKPGGKLLYCTCS 389
Query: 88 LWFEESEEQAIIFSKNHKDS--IRLNSP--GQLLPTVNK----KQDYDGFFYSLFQKRK 138
+ EE+E F K H ++ I LN P LP + + + GFFY+L KR+
Sbjct: 390 MLLEENEYIIEKFLKQHYNAELIPLNKPYDPGFLPGTMRAWPHRHETIGFFYALLMKRR 448
>gi|416256758|ref|ZP_11639835.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella
catarrhalis O35E]
gi|326573497|gb|EGE23463.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella
catarrhalis O35E]
Length = 448
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 52/142 (36%), Positives = 79/142 (55%), Gaps = 10/142 (7%)
Query: 5 EIESSDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYS 64
++++ DI+ + + ++ FD IL D PCT +GV+RR+PDI LR++ DI
Sbjct: 304 KLDTKDISVVHADGTSWRSDQCFDVILLDAPCTATGVLRRHPDIGLLRQEQDIATTVNLQ 363
Query: 65 CKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS----IRLNSPGQLLPTV 120
IL+NLW LK GG LL+VTCS+ E+E Q I F + + D+ L+ P Q+ V
Sbjct: 364 RSILDNLWSRLKVGGVLLYVTCSILKAENERQIIDFLRANDDANAIPFDLSLPHQIKQQV 423
Query: 121 NKK------QDYDGFFYSLFQK 136
+ + DGF+Y+L K
Sbjct: 424 GYQCLPLDTKGGDGFYYALLTK 445
>gi|416230566|ref|ZP_11628490.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella
catarrhalis 46P47B1]
gi|326560689|gb|EGE11057.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella
catarrhalis 46P47B1]
Length = 448
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 52/142 (36%), Positives = 79/142 (55%), Gaps = 10/142 (7%)
Query: 5 EIESSDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYS 64
++++ DI+ + + ++ FD IL D PCT +GV+RR+PDI LR++ DI
Sbjct: 304 KLDTKDISVVHADGTSWRSDQCFDVILLDAPCTATGVLRRHPDIGLLRQEQDIATTVNLQ 363
Query: 65 CKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS----IRLNSPGQLLPTV 120
IL+NLW LK GG LL+VTCS+ E+E Q I F + + D+ L+ P Q+ V
Sbjct: 364 RSILDNLWSRLKVGGVLLYVTCSILKAENERQIIDFLRANDDANAIPFDLSLPHQIKQQV 423
Query: 121 NKK------QDYDGFFYSLFQK 136
+ + DGF+Y+L K
Sbjct: 424 GYQCLPLDTKGGDGFYYALLTK 445
>gi|262280615|ref|ZP_06058399.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter
calcoaceticus RUH2202]
gi|262258393|gb|EEY77127.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter
calcoaceticus RUH2202]
Length = 434
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 46/119 (38%), Positives = 68/119 (57%), Gaps = 13/119 (10%)
Query: 28 DRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 87
D I+ D PC+ +GV+RR+PDI LR+ +DI + + +IL ++W+ LK GG LL++TCS
Sbjct: 317 DCIVLDAPCSATGVIRRHPDIRLLRQSSDIAQTIELQKQILQHMWQQLKAGGTLLYITCS 376
Query: 88 LWFEESEEQAIIFSKNHKDSIRLNSPG----------QLLPTVNKKQDYDGFFYSLFQK 136
+ E+E+Q I F H D+ + QLLP + Q DGF+Y QK
Sbjct: 377 VLKAENEQQMIDFFAEHTDAKEIKIEADWGIEQIHGRQLLP---QAQSGDGFYYCKIQK 432
>gi|171911400|ref|ZP_02926870.1| putative sun protein [Verrucomicrobium spinosum DSM 4136]
Length = 408
Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 65/105 (61%), Gaps = 3/105 (2%)
Query: 28 DRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 87
DR+L D+PC+G GV+RRNPD W + ++ +L K +IL + +M+KPGGKL++ TCS
Sbjct: 301 DRVLLDVPCSGLGVIRRNPDAKWKLSEEELDRLEKLQQEILVSHSRMVKPGGKLVYATCS 360
Query: 88 LWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYS 132
L+ E++ Q F +H D +L L P ++ YDGF+ +
Sbjct: 361 LFPSENDRQVQTFLASHGDEWKLEEELSLRPD---REGYDGFYAA 402
>gi|220925067|ref|YP_002500369.1| sun protein [Methylobacterium nodulans ORS 2060]
gi|219949674|gb|ACL60066.1| sun protein [Methylobacterium nodulans ORS 2060]
Length = 448
Score = 88.2 bits (217), Expect = 9e-16, Method: Composition-based stats.
Identities = 37/84 (44%), Positives = 55/84 (65%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FD IL D PC+ +G +RR+PD+ W +R+ D+ +L+ K+L+ ++L+PGG+L++ TC
Sbjct: 315 FDAILLDAPCSATGTIRRHPDVAWTKREGDLPRLAALQGKLLDKAARLLRPGGRLVYCTC 374
Query: 87 SLWFEESEEQAIIFSKNHKDSIRL 110
SL EE E QA F H D RL
Sbjct: 375 SLEPEEGEAQADAFLARHSDFARL 398
>gi|421695774|ref|ZP_16135375.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii WC-692]
gi|404564327|gb|EKA69508.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii WC-692]
Length = 434
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 47/119 (39%), Positives = 68/119 (57%), Gaps = 13/119 (10%)
Query: 28 DRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 87
D I+ D PC+ +GV+RR+PDI LR+ +DI + + +IL ++W+ LK GG LL++TCS
Sbjct: 317 DCIVLDAPCSATGVIRRHPDIRLLRQSSDIAQTIELQKQILEHMWQQLKVGGTLLYITCS 376
Query: 88 LWFEESEEQAIIFSKNHKDS----------IRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
+ E+E+Q I F H D+ I QLLP + Q DGF+Y QK
Sbjct: 377 ILKSENEQQMINFFTEHTDAKEVKIEADWGIEQTYGRQLLP---EAQSGDGFYYCKIQK 432
>gi|213158779|ref|YP_002321200.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii AB0057]
gi|301345911|ref|ZP_07226652.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii AB056]
gi|301596687|ref|ZP_07241695.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii AB059]
gi|417574952|ref|ZP_12225805.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii Canada BC-5]
gi|421799529|ref|ZP_16235520.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii Canada BC1]
gi|213057939|gb|ACJ42841.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii AB0057]
gi|400205685|gb|EJO36665.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii Canada BC-5]
gi|410409551|gb|EKP61479.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii Canada BC1]
Length = 434
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 47/119 (39%), Positives = 68/119 (57%), Gaps = 13/119 (10%)
Query: 28 DRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 87
D I+ D PC+ +GV+RR+PDI LR+ +DI + + +IL ++W+ LK GG LL++TCS
Sbjct: 317 DCIVLDAPCSATGVIRRHPDIRLLRQSSDIAQTIELQKQILEHMWQQLKVGGTLLYITCS 376
Query: 88 LWFEESEEQAIIFSKNHKDS----------IRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
+ E+E+Q I F H D+ I QLLP + Q DGF+Y QK
Sbjct: 377 ILKSENEQQMINFFTEHTDAKEVKIEADWGIEQTYGRQLLP---EAQSGDGFYYCKIQK 432
>gi|260553856|ref|ZP_05826124.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter sp.
RUH2624]
gi|260404976|gb|EEW98478.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter sp.
RUH2624]
Length = 434
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 47/119 (39%), Positives = 68/119 (57%), Gaps = 13/119 (10%)
Query: 28 DRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 87
D I+ D PC+ +GV+RR+PDI LR+ +DI + + +IL ++W+ LK GG LL++TCS
Sbjct: 317 DCIVLDAPCSATGVIRRHPDIRLLRQSSDIAQTIELQKQILEHMWQQLKVGGSLLYITCS 376
Query: 88 LWFEESEEQAIIFSKNHKDS----------IRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
+ E+E+Q I F H D+ I QLLP + Q DGF+Y QK
Sbjct: 377 ILKAENEQQMISFFAKHTDAKEVKIEADWGIEQAHGRQLLP---EAQSGDGFYYCKIQK 432
>gi|33596603|ref|NP_884246.1| hypothetical protein BPP1987 [Bordetella parapertussis 12822]
gi|410472711|ref|YP_006895992.1| hypothetical protein BN117_2055 [Bordetella parapertussis Bpp5]
gi|427815138|ref|ZP_18982202.1| conserved hypothetical protein [Bordetella bronchiseptica 1289]
gi|33573304|emb|CAE37287.1| conserved hypothetical protein [Bordetella parapertussis]
gi|408442821|emb|CCJ49388.1| conserved hypothetical protein [Bordetella parapertussis Bpp5]
gi|410566138|emb|CCN23698.1| conserved hypothetical protein [Bordetella bronchiseptica 1289]
Length = 433
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 50/142 (35%), Positives = 77/142 (54%), Gaps = 16/142 (11%)
Query: 11 INKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNN 70
I+ + + R + K R+L D PC+G G +RRNPD+ W + I ++ + +IL +
Sbjct: 268 IDSENDTRVKRLAGKA-QRVLVDAPCSGIGTLRRNPDLKWRQHPQSIAEMCELQHRILKS 326
Query: 71 LWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLL-----------PT 119
+ + PGG+L++ TCSL EE+ EQA F H D RL++ QLL P
Sbjct: 327 AARCVAPGGRLVYATCSLLAEENAEQAERFLAEHPDFERLDA-AQLLANRCANLTLSGPY 385
Query: 120 VNKKQDY---DGFFYSLFQKRK 138
V + D DGFF ++F++RK
Sbjct: 386 VQLRPDVHGTDGFFAAVFERRK 407
>gi|33592823|ref|NP_880467.1| hypothetical protein BP1756 [Bordetella pertussis Tohama I]
gi|384204122|ref|YP_005589861.1| hypothetical protein BPTD_1733 [Bordetella pertussis CS]
gi|33572471|emb|CAE42042.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
gi|332382236|gb|AEE67083.1| hypothetical protein BPTD_1733 [Bordetella pertussis CS]
Length = 433
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 50/142 (35%), Positives = 77/142 (54%), Gaps = 16/142 (11%)
Query: 11 INKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNN 70
I+ + + R + K R+L D PC+G G +RRNPD+ W + I ++ + +IL +
Sbjct: 268 IDSENDTRVKRLAGKA-QRVLVDAPCSGIGTLRRNPDLKWRQHPQSIAEMCELQHRILKS 326
Query: 71 LWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLL-----------PT 119
+ + PGG+L++ TCSL EE+ EQA F H D RL++ QLL P
Sbjct: 327 AARCVAPGGRLVYATCSLLAEENAEQAERFLAEHPDFERLDA-AQLLANRCANLTLSGPY 385
Query: 120 VNKKQDY---DGFFYSLFQKRK 138
V + D DGFF ++F++RK
Sbjct: 386 VQLRPDVHGTDGFFAAVFERRK 407
>gi|427821889|ref|ZP_18988951.1| conserved hypothetical protein [Bordetella bronchiseptica Bbr77]
gi|410587154|emb|CCN02187.1| conserved hypothetical protein [Bordetella bronchiseptica Bbr77]
Length = 433
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 50/142 (35%), Positives = 77/142 (54%), Gaps = 16/142 (11%)
Query: 11 INKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNN 70
I+ + + R + K R+L D PC+G G +RRNPD+ W + I ++ + +IL +
Sbjct: 268 IDSENDTRVKRLAGKA-QRVLVDAPCSGIGTLRRNPDLKWRQHPQSIAEMCELQHRILKS 326
Query: 71 LWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLL-----------PT 119
+ + PGG+L++ TCSL EE+ EQA F H D RL++ QLL P
Sbjct: 327 AARCVAPGGRLVYATCSLLAEENAEQAERFLAEHPDFERLDA-AQLLANRCANLTLSGPY 385
Query: 120 VNKKQDY---DGFFYSLFQKRK 138
V + D DGFF ++F++RK
Sbjct: 386 VQLRPDVHGTDGFFAAVFERRK 407
>gi|412338659|ref|YP_006967414.1| hypothetical protein BN112_1342 [Bordetella bronchiseptica 253]
gi|408768493|emb|CCJ53259.1| conserved hypothetical protein [Bordetella bronchiseptica 253]
Length = 433
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 50/142 (35%), Positives = 77/142 (54%), Gaps = 16/142 (11%)
Query: 11 INKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNN 70
I+ + + R + K R+L D PC+G G +RRNPD+ W + I ++ + +IL +
Sbjct: 268 IDSENDTRVKRLAGKA-QRVLVDAPCSGIGTLRRNPDLKWRQHPQSIAEMCELQHRILKS 326
Query: 71 LWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLL-----------PT 119
+ + PGG+L++ TCSL EE+ EQA F H D RL++ QLL P
Sbjct: 327 AARCVAPGGRLVYATCSLLAEENAEQAERFLAEHPDFERLDA-AQLLSNRCANLTLSGPY 385
Query: 120 VNKKQDY---DGFFYSLFQKRK 138
V + D DGFF ++F++RK
Sbjct: 386 VQLRPDVHGTDGFFAAVFERRK 407
>gi|410420645|ref|YP_006901094.1| hypothetical protein BN115_2861 [Bordetella bronchiseptica MO149]
gi|408447940|emb|CCJ59617.1| conserved hypothetical protein [Bordetella bronchiseptica MO149]
Length = 433
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 50/142 (35%), Positives = 77/142 (54%), Gaps = 16/142 (11%)
Query: 11 INKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNN 70
I+ + + R + K R+L D PC+G G +RRNPD+ W + I ++ + +IL +
Sbjct: 268 IDSENDTRVKRLAGKA-QRVLVDAPCSGIGTLRRNPDLKWRQHPQSIAEMCELQHRILKS 326
Query: 71 LWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLL-----------PT 119
+ + PGG+L++ TCSL EE+ EQA F H D RL++ QLL P
Sbjct: 327 AARCVAPGGRLVYATCSLLAEENAEQAERFLAEHPDFERLDA-AQLLANRCANLTLSGPY 385
Query: 120 VNKKQDY---DGFFYSLFQKRK 138
V + D DGFF ++F++RK
Sbjct: 386 VQLRPDVHGTDGFFAAVFERRK 407
>gi|389783169|ref|ZP_10194663.1| ribosomal RNA small subunit methyltransferase RsmB [Rhodanobacter
spathiphylli B39]
gi|388435107|gb|EIL92025.1| ribosomal RNA small subunit methyltransferase RsmB [Rhodanobacter
spathiphylli B39]
Length = 433
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 44/127 (34%), Positives = 74/127 (58%), Gaps = 13/127 (10%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++K + FDRIL D PC+ +GV+RR PD+ RR++DI + +IL+ LW +L PGG+
Sbjct: 309 WWKGQPFDRILIDAPCSATGVLRRRPDVRLHRRESDIAAMHAQQRRILSALWPLLAPGGR 368
Query: 81 LLFVTCSLWFEESEE--QAIIFSKNHKDSIRLNSPG--------QLLPTVNKKQDYDGFF 130
L+++TCS+ E+E ++ ++ + + + P Q+LP D DG +
Sbjct: 369 LVYITCSVLRAENEAIVGELLATRADAEVVPFSLPAGQPAATGWQILP---GDGDLDGMY 425
Query: 131 YSLFQKR 137
Y++ QKR
Sbjct: 426 YAVLQKR 432
>gi|296114107|ref|YP_003628045.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella
catarrhalis RH4]
gi|295921801|gb|ADG62152.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella
catarrhalis BBH18]
Length = 448
Score = 87.8 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 51/142 (35%), Positives = 79/142 (55%), Gaps = 10/142 (7%)
Query: 5 EIESSDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYS 64
++++ D++ + + ++ FD IL D PCT +GV+RR+PDI LR++ DI
Sbjct: 304 KLDTKDVSVVHADGTSWRSDQCFDVILLDAPCTATGVLRRHPDIGLLRQEQDIATTVNLQ 363
Query: 65 CKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS----IRLNSPGQLLPTV 120
IL+NLW LK GG LL+VTCS+ E+E Q I F + + D+ L+ P Q+ V
Sbjct: 364 RSILDNLWSRLKVGGVLLYVTCSILKAENERQIIDFLRANDDANAIPFDLSLPHQIKQQV 423
Query: 121 NKK------QDYDGFFYSLFQK 136
+ + DGF+Y+L K
Sbjct: 424 GYQCLPLDTKGGDGFYYALLTK 445
>gi|445438538|ref|ZP_21441361.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii OIFC021]
gi|444752869|gb|ELW77539.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii OIFC021]
Length = 434
Score = 87.8 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 47/119 (39%), Positives = 68/119 (57%), Gaps = 13/119 (10%)
Query: 28 DRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 87
D I+ D PC+ +GV+RR+PDI LR+ +DI + + +IL ++W+ LK GG LL++TCS
Sbjct: 317 DCIVLDAPCSATGVIRRHPDIRLLRQSSDIAQTIELQKQILEHMWQQLKVGGTLLYITCS 376
Query: 88 LWFEESEEQAIIFSKNHKDS----------IRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
+ E+E+Q I F H D+ I QLLP + Q DGF+Y QK
Sbjct: 377 ILKAENEQQMISFFAKHTDAKEVKIEADWGIEQAHGRQLLP---EAQSGDGFYYCKIQK 432
>gi|424057529|ref|ZP_17795046.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
nosocomialis Ab22222]
gi|425742534|ref|ZP_18860640.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii WC-487]
gi|407440045|gb|EKF46563.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
nosocomialis Ab22222]
gi|425486881|gb|EKU53245.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii WC-487]
Length = 434
Score = 87.8 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 47/119 (39%), Positives = 68/119 (57%), Gaps = 13/119 (10%)
Query: 28 DRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 87
D I+ D PC+ +GV+RR+PDI LR+ +DI + + +IL ++W+ LK GG LL++TCS
Sbjct: 317 DCIVLDAPCSATGVIRRHPDIRLLRQSSDIAQTIELQKQILEHMWQQLKVGGTLLYITCS 376
Query: 88 LWFEESEEQAIIFSKNHKDS----------IRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
+ E+E+Q I F H D+ I QLLP + Q DGF+Y QK
Sbjct: 377 ILKAENEQQMISFFAEHTDAKEVKIEADWGIEQAHGRQLLP---EAQSGDGFYYCKIQK 432
>gi|126643464|ref|YP_001086448.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter
baumannii ATCC 17978]
Length = 405
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 68/120 (56%), Gaps = 13/120 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
D I+ D PC+ +GV+RR+PDI LR+ +DI + + +IL ++W+ LK GG LL++TC
Sbjct: 287 VDCIVLDAPCSATGVIRRHPDIRLLRQSSDIAQTIELQKQILEHMWQQLKVGGTLLYITC 346
Query: 87 SLWFEESEEQAIIFSKNHKDS----------IRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
S+ E+E+Q I F H D+ I QLLP + Q DGF+Y QK
Sbjct: 347 SILKSENEQQMINFFTEHPDAKEVKIEADWGIEQVHGRQLLP---EAQSGDGFYYCKIQK 403
>gi|52842799|ref|YP_096598.1| rRNA methyltransferase (SUN protein) [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|378778488|ref|YP_005186927.1| rRNA methyltransferase (SUN protein) [Legionella pneumophila subsp.
pneumophila ATCC 43290]
gi|52629910|gb|AAU28651.1| rRNA methyltransferase (SUN protein) [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|364509304|gb|AEW52828.1| rRNA methyltransferase (SUN protein) [Legionella pneumophila subsp.
pneumophila ATCC 43290]
Length = 427
Score = 87.8 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 47/120 (39%), Positives = 67/120 (55%), Gaps = 13/120 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+ DI LR +I +S+ +LN+LW +L PGG +++ TC
Sbjct: 308 FDRILLDAPCSATGVIRRHSDIKLLRTDEEISAISQVQSSMLNSLWPLLAPGGLMVYATC 367
Query: 87 SLWFEESEEQAIIFSKNHKDSI---------RLNSPG-QLLPTVNKKQDYDGFFYSLFQK 136
S+ +E+E Q F H D R G Q+LP + DGFFYS+ +K
Sbjct: 368 SIMSDENELQIAQFVAEHSDCQVSDGKWSWGRWTGHGQQILP---GEHSMDGFFYSVLRK 424
>gi|357406751|ref|YP_004918675.1| ribosomal RNA small subunit methyltransferase B [Methylomicrobium
alcaliphilum 20Z]
gi|351719416|emb|CCE25092.1| Ribosomal RNA small subunit methyltransferase B [Methylomicrobium
alcaliphilum 20Z]
Length = 429
Score = 87.8 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 46/118 (38%), Positives = 66/118 (55%), Gaps = 9/118 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
+DRIL D PC+ GV+RR+PDI LR+ DI L + KIL +W +L PGG L++ TC
Sbjct: 312 YDRILLDAPCSALGVIRRHPDIKLLRKPGDIAPLQQLQQKILEAVWPLLAPGGLLIYATC 371
Query: 87 SLWFEESEEQAIIFSKNHKDSIR--------LNSPGQLLPTVNKKQDYDGFFYSLFQK 136
S+ EE+E Q F +H+D+ + P Q + Q DGF+Y+ +K
Sbjct: 372 SILKEENELQIQRFLNHHQDATEWPIDCNWGMARP-QGRQILTGSQAMDGFYYARIRK 428
>gi|14521455|ref|NP_126931.1| proliferating-cell nucleolar antigen P120, [Pyrococcus abyssi GE5]
gi|5458674|emb|CAB50161.1| Sun/NOL1/NOP2 nucleolar protein [Pyrococcus abyssi GE5]
gi|380742059|tpe|CCE70693.1| TPA: proliferating-cell nucleolar antigen P120, putative
[Pyrococcus abyssi GE5]
Length = 449
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 73/117 (62%), Gaps = 8/117 (6%)
Query: 28 DRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 87
DR+L D PCT SG + +NP++ W R++ IK++++ ++L + K++KPGG LL+ TCS
Sbjct: 332 DRVLLDAPCTSSGTIGKNPELRWRLRESKIKEMAQLQRELLESAAKLVKPGGLLLYTTCS 391
Query: 88 LWFEESEEQAIIFSKNHKD--SIRLNS---PGQLLPTVN---KKQDYDGFFYSLFQK 136
L+ EE+EE F NH++ + LNS PG L T+ + GFFY+L +K
Sbjct: 392 LFTEENEENVKWFLNNHQEFKLVHLNSPYDPGFLEGTMRAWPHRHSTIGFFYALLRK 448
>gi|344209024|ref|YP_004794165.1| sun protein [Stenotrophomonas maltophilia JV3]
gi|343780386|gb|AEM52939.1| sun protein [Stenotrophomonas maltophilia JV3]
Length = 443
Score = 87.8 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 45/118 (38%), Positives = 63/118 (53%), Gaps = 8/118 (6%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FD IL D PC+ +GV+RR PD+ + RR DI+ L ++L W ML+PGG LL+ TC
Sbjct: 324 FDAILLDAPCSATGVIRRQPDVMFHRRAEDIEALVGVQARLLEACWSMLRPGGVLLYATC 383
Query: 87 SLWFEESEEQAIIFSKNHKDSIR--------LNSPGQLLPTVNKKQDYDGFFYSLFQK 136
S+ E+ +Q F K H D++ L+ G + D DGFFY+ K
Sbjct: 384 SILRAENVDQVRAFLKWHPDAVAQPLDDTFGLDCEGIARQRLPGDSDADGFFYARLLK 441
>gi|422318079|ref|ZP_16399364.1| hypothetical protein HMPREF0005_05441 [Achromobacter xylosoxidans
C54]
gi|317407327|gb|EFV87297.1| hypothetical protein HMPREF0005_05441 [Achromobacter xylosoxidans
C54]
Length = 459
Score = 87.8 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 46/124 (37%), Positives = 71/124 (57%), Gaps = 13/124 (10%)
Query: 29 RILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSL 88
R+L D PC+G G +RRNPD+ W + + +L + +ILN+ + + PGG+L++ TCSL
Sbjct: 287 RVLVDAPCSGIGTLRRNPDLKWRQHPEALAELGQLQERILNSAARCVAPGGRLVYATCSL 346
Query: 89 WFEESEEQAIIFSKNHKDSIRLNSPGQLL----------PTVNKKQDY---DGFFYSLFQ 135
EE+E QA F +H D RL++ L P V + D DGFF ++F+
Sbjct: 347 LAEENEVQAERFLASHPDFERLDAAEILAGRCDNLKLEGPYVQLRPDVHGTDGFFAAVFE 406
Query: 136 KRKE 139
+RK+
Sbjct: 407 RRKK 410
>gi|421807208|ref|ZP_16243069.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii OIFC035]
gi|410416850|gb|EKP68621.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii OIFC035]
Length = 434
Score = 87.8 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 46/119 (38%), Positives = 68/119 (57%), Gaps = 13/119 (10%)
Query: 28 DRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 87
D I+ D PC+ +GV+RR+PDI LR+ +DI + + +IL ++W+ LK GG LL++TCS
Sbjct: 317 DCIVLDAPCSATGVIRRHPDIRLLRQSSDIAQTIELQKQILEHMWQQLKVGGTLLYITCS 376
Query: 88 LWFEESEEQAIIFSKNHKDSIRLNSPG----------QLLPTVNKKQDYDGFFYSLFQK 136
+ E+E+Q I F H D+ + QLLP + Q DGF+Y QK
Sbjct: 377 ILKSENEQQMINFFTEHTDAKEVKIEADWGIEQVHGRQLLP---EAQSGDGFYYCKIQK 432
>gi|424058172|ref|ZP_17795670.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii Ab33333]
gi|404665991|gb|EKB33948.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii Ab33333]
Length = 434
Score = 87.8 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 46/119 (38%), Positives = 68/119 (57%), Gaps = 13/119 (10%)
Query: 28 DRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 87
D I+ D PC+ +GV+RR+PDI LR+ +DI + + +IL ++W+ LK GG LL++TCS
Sbjct: 317 DCIVLDAPCSATGVIRRHPDIRLLRQSSDIAQTIELQKQILEHMWQQLKVGGTLLYITCS 376
Query: 88 LWFEESEEQAIIFSKNHKDSIRLNSPG----------QLLPTVNKKQDYDGFFYSLFQK 136
+ E+E+Q I F H D+ + QLLP + Q DGF+Y QK
Sbjct: 377 ILKSENEQQMINFFTEHTDAKEVKIEADWGIEQVHGRQLLP---EAQSGDGFYYCKIQK 432
>gi|423018697|ref|ZP_17009418.1| NOL1/NOP2/sun family protein, partial [Achromobacter xylosoxidans
AXX-A]
gi|338778276|gb|EGP42753.1| NOL1/NOP2/sun family protein [Achromobacter xylosoxidans AXX-A]
Length = 599
Score = 87.8 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 46/127 (36%), Positives = 73/127 (57%), Gaps = 19/127 (14%)
Query: 29 RILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSL 88
R+L D PC+G G +RRNPD+ W + + +L + +ILN+ + + PGG+L++ TCSL
Sbjct: 419 RVLVDAPCSGIGTLRRNPDLKWRQHPESLAELGQLQERILNSAARCVAPGGRLVYATCSL 478
Query: 89 WFEESEEQAIIFSKNHK---------------DSIRLNSPG-QLLPTVNKKQDYDGFFYS 132
EE+E QA F +H D+++L+ P QL P V+ DGFF +
Sbjct: 479 LAEENEVQADRFLASHPDFERVDAAEILAARCDTLKLDGPYVQLRPDVHGT---DGFFAA 535
Query: 133 LFQKRKE 139
+F++RK+
Sbjct: 536 VFERRKK 542
>gi|254502120|ref|ZP_05114271.1| ribosomal RNA small subunit methyltransferase B [Labrenzia
alexandrii DFL-11]
gi|222438191|gb|EEE44870.1| ribosomal RNA small subunit methyltransferase B [Labrenzia
alexandrii DFL-11]
Length = 468
Score = 87.8 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 38/84 (45%), Positives = 56/84 (66%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FD IL D PC+ +G +RR+PD+PW+++ DI+KLS+ +L+ + LKPGG L++ TC
Sbjct: 336 FDAILLDAPCSATGTIRRHPDVPWIKKPYDIEKLSEIQTALLDRVMSWLKPGGVLVYCTC 395
Query: 87 SLWFEESEEQAIIFSKNHKDSIRL 110
SL E E QA F + +KD + L
Sbjct: 396 SLERAEGEGQAEAFLERNKDRVSL 419
>gi|445402174|ref|ZP_21430571.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii Naval-57]
gi|444782770|gb|ELX06646.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii Naval-57]
Length = 434
Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 46/119 (38%), Positives = 68/119 (57%), Gaps = 13/119 (10%)
Query: 28 DRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 87
D I+ D PC+ +GV+RR+PDI LR+ +DI + + +IL ++W+ LK GG LL++TCS
Sbjct: 317 DCIVLDAPCSATGVIRRHPDIRLLRQSSDIAQTIELQKQILEHMWQQLKVGGTLLYITCS 376
Query: 88 LWFEESEEQAIIFSKNHKDSIRLNSPG----------QLLPTVNKKQDYDGFFYSLFQK 136
+ E+E+Q I F H D+ + QLLP + Q DGF+Y QK
Sbjct: 377 ILKSENEQQMINFFTEHPDAKEVKIEADWGIEQVHGRQLLP---EAQSGDGFYYCKIQK 432
>gi|445489953|ref|ZP_21458961.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii AA-014]
gi|444766395|gb|ELW90670.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii AA-014]
Length = 434
Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 46/119 (38%), Positives = 68/119 (57%), Gaps = 13/119 (10%)
Query: 28 DRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 87
D I+ D PC+ +GV+RR+PDI LR+ +DI + + +IL ++W+ LK GG LL++TCS
Sbjct: 317 DCIVLDAPCSATGVIRRHPDIRLLRQSSDIAQTIELQKQILEHMWQQLKVGGTLLYITCS 376
Query: 88 LWFEESEEQAIIFSKNHKDSIRLNSPG----------QLLPTVNKKQDYDGFFYSLFQK 136
+ E+E+Q I F H D+ + QLLP + Q DGF+Y QK
Sbjct: 377 ILKSENEQQMINFFTEHPDAKEVKIEAVWGIEQVHGRQLLP---EAQSGDGFYYCKIQK 432
>gi|421705237|ref|ZP_16144677.1| 16S rRNA methyltransferase B [Acinetobacter baumannii ZWS1122]
gi|421709017|ref|ZP_16148389.1| 16S rRNA methyltransferase B [Acinetobacter baumannii ZWS1219]
gi|407188814|gb|EKE60046.1| 16S rRNA methyltransferase B [Acinetobacter baumannii ZWS1122]
gi|407188881|gb|EKE60110.1| 16S rRNA methyltransferase B [Acinetobacter baumannii ZWS1219]
Length = 434
Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 46/119 (38%), Positives = 68/119 (57%), Gaps = 13/119 (10%)
Query: 28 DRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 87
D I+ D PC+ +GV+RR+PDI LR+ +DI + + +IL ++W+ LK GG LL++TCS
Sbjct: 317 DCIVLDAPCSATGVIRRHPDIRLLRQSSDIAQTIELQKQILEHMWQQLKVGGTLLYITCS 376
Query: 88 LWFEESEEQAIIFSKNHKDSIRLNSPG----------QLLPTVNKKQDYDGFFYSLFQK 136
+ E+E+Q I F H D+ + QLLP + Q DGF+Y QK
Sbjct: 377 ILKSENEQQMINFFTEHPDAKEVKIEADWGIEQVHGRQLLP---EAQSGDGFYYCKIQK 432
>gi|384145093|ref|YP_005527803.1| tRNA and rRNA cytosine-C5-methylase [Acinetobacter baumannii
MDR-ZJ06]
gi|385239396|ref|YP_005800735.1| tRNA and rRNA cytosine-C5-methylase [Acinetobacter baumannii
TCDC-AB0715]
gi|387122108|ref|YP_006287990.1| ribosomal RNA small subunit methyltransferase RsmB [Acinetobacter
baumannii MDR-TJ]
gi|416149749|ref|ZP_11603039.1| tRNA and rRNA cytosine-C5-methylase [Acinetobacter baumannii AB210]
gi|417570589|ref|ZP_12221446.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii OIFC189]
gi|421203089|ref|ZP_15660233.1| ribosomal rna small subunit methyltransferase b [Acinetobacter
baumannii AC12]
gi|421533250|ref|ZP_15979535.1| tRNA and rRNA cytosine-C5-methylase [Acinetobacter baumannii AC30]
gi|421668610|ref|ZP_16108647.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii OIFC087]
gi|424050472|ref|ZP_17788008.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii Ab11111]
gi|425753977|ref|ZP_18871844.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii Naval-113]
gi|323519897|gb|ADX94278.1| tRNA and rRNA cytosine-C5-methylase [Acinetobacter baumannii
TCDC-AB0715]
gi|333364256|gb|EGK46270.1| tRNA and rRNA cytosine-C5-methylase [Acinetobacter baumannii AB210]
gi|347595586|gb|AEP08307.1| tRNA and rRNA cytosine-C5-methylase [Acinetobacter baumannii
MDR-ZJ06]
gi|385876600|gb|AFI93695.1| ribosomal RNA small subunit methyltransferase RsmB [Acinetobacter
baumannii MDR-TJ]
gi|395551037|gb|EJG17046.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii OIFC189]
gi|398327565|gb|EJN43699.1| ribosomal rna small subunit methyltransferase b [Acinetobacter
baumannii AC12]
gi|404669225|gb|EKB37118.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii Ab11111]
gi|409988682|gb|EKO44850.1| tRNA and rRNA cytosine-C5-methylase [Acinetobacter baumannii AC30]
gi|410379910|gb|EKP32505.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii OIFC087]
gi|425497370|gb|EKU63476.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii Naval-113]
Length = 434
Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 46/119 (38%), Positives = 68/119 (57%), Gaps = 13/119 (10%)
Query: 28 DRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 87
D I+ D PC+ +GV+RR+PDI LR+ +DI + + +IL ++W+ LK GG LL++TCS
Sbjct: 317 DCIVLDAPCSATGVIRRHPDIRLLRQSSDIAQTIELQKQILEHMWQQLKVGGTLLYITCS 376
Query: 88 LWFEESEEQAIIFSKNHKDSIRLNSPG----------QLLPTVNKKQDYDGFFYSLFQK 136
+ E+E+Q I F H D+ + QLLP + Q DGF+Y QK
Sbjct: 377 ILKSENEQQMINFFTEHPDAKEVKIEADWGIEQVHGRQLLP---EAQSGDGFYYCKIQK 432
>gi|260557781|ref|ZP_05829994.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii ATCC 19606 = CIP 70.34]
gi|445441488|ref|ZP_21442051.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii WC-A-92]
gi|260408572|gb|EEX01877.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii ATCC 19606 = CIP 70.34]
gi|444764766|gb|ELW89073.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii WC-A-92]
gi|452952757|gb|EME58181.1| 16S rRNA methyltransferase B [Acinetobacter baumannii MSP4-16]
Length = 434
Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 46/119 (38%), Positives = 68/119 (57%), Gaps = 13/119 (10%)
Query: 28 DRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 87
D I+ D PC+ +GV+RR+PDI LR+ +DI + + +IL ++W+ LK GG LL++TCS
Sbjct: 317 DCIVLDAPCSATGVIRRHPDIRLLRQSSDIAQTIELQKQILEHMWQQLKVGGTLLYITCS 376
Query: 88 LWFEESEEQAIIFSKNHKDSIRLNSPG----------QLLPTVNKKQDYDGFFYSLFQK 136
+ E+E+Q I F H D+ + QLLP + Q DGF+Y QK
Sbjct: 377 ILKSENEQQMINFFTEHPDAKEVKIEADWGIEQVHGRQLLP---EAQSGDGFYYCKIQK 432
>gi|425748130|ref|ZP_18866118.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii WC-348]
gi|193078768|gb|ABO13846.2| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter
baumannii ATCC 17978]
gi|425491676|gb|EKU57956.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii WC-348]
Length = 434
Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 46/119 (38%), Positives = 68/119 (57%), Gaps = 13/119 (10%)
Query: 28 DRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 87
D I+ D PC+ +GV+RR+PDI LR+ +DI + + +IL ++W+ LK GG LL++TCS
Sbjct: 317 DCIVLDAPCSATGVIRRHPDIRLLRQSSDIAQTIELQKQILEHMWQQLKVGGTLLYITCS 376
Query: 88 LWFEESEEQAIIFSKNHKDSIRLNSPG----------QLLPTVNKKQDYDGFFYSLFQK 136
+ E+E+Q I F H D+ + QLLP + Q DGF+Y QK
Sbjct: 377 ILKSENEQQMINFFTEHPDAKEVKIEADWGIEQVHGRQLLP---EAQSGDGFYYCKIQK 432
>gi|184159973|ref|YP_001848312.1| tRNA and rRNA cytosine-C5-methylase [Acinetobacter baumannii ACICU]
gi|384133670|ref|YP_005516282.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter
baumannii 1656-2]
gi|417880500|ref|ZP_12525020.1| 16S rRNA methyltransferase B [Acinetobacter baumannii ABNIH3]
gi|445465616|ref|ZP_21450074.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii OIFC338]
gi|183211567|gb|ACC58965.1| tRNA and rRNA cytosine-C5-methylase [Acinetobacter baumannii ACICU]
gi|322509890|gb|ADX05344.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter
baumannii 1656-2]
gi|342224547|gb|EGT89574.1| 16S rRNA methyltransferase B [Acinetobacter baumannii ABNIH3]
gi|444778808|gb|ELX02811.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii OIFC338]
Length = 434
Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 46/119 (38%), Positives = 68/119 (57%), Gaps = 13/119 (10%)
Query: 28 DRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 87
D I+ D PC+ +GV+RR+PDI LR+ +DI + + +IL ++W+ LK GG LL++TCS
Sbjct: 317 DCIVLDAPCSATGVIRRHPDIRLLRQSSDIAQTIELQKQILEHMWQQLKVGGTLLYITCS 376
Query: 88 LWFEESEEQAIIFSKNHKDSIRLNSPG----------QLLPTVNKKQDYDGFFYSLFQK 136
+ E+E+Q I F H D+ + QLLP + Q DGF+Y QK
Sbjct: 377 ILKSENEQQMINFFTEHPDAKEVKIEADWGIEQVHGRQLLP---EAQSGDGFYYCKIQK 432
>gi|169634914|ref|YP_001708650.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter
baumannii SDF]
gi|169153706|emb|CAP02904.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter
baumannii]
Length = 434
Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 46/119 (38%), Positives = 68/119 (57%), Gaps = 13/119 (10%)
Query: 28 DRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 87
D I+ D PC+ +GV+RR+PDI LR+ +DI + + +IL ++W+ LK GG LL++TCS
Sbjct: 317 DCIVLDAPCSATGVIRRHPDIRLLRQSSDIAQTIELQKQILEHMWQQLKVGGTLLYITCS 376
Query: 88 LWFEESEEQAIIFSKNHKDSIRLNSPG----------QLLPTVNKKQDYDGFFYSLFQK 136
+ E+E+Q I F H D+ + QLLP + Q DGF+Y QK
Sbjct: 377 ILKSENEQQMINFFTEHPDAKEVKIEADWGIEQVHGRQLLP---EAQSGDGFYYCKIQK 432
>gi|169794225|ref|YP_001712018.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter
baumannii AYE]
gi|215481783|ref|YP_002323965.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii AB307-0294]
gi|301510400|ref|ZP_07235637.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii AB058]
gi|332850303|ref|ZP_08432637.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii 6013150]
gi|332871589|ref|ZP_08440083.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii 6013113]
gi|417560064|ref|ZP_12210943.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii OIFC137]
gi|421199895|ref|ZP_15657056.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii OIFC109]
gi|421453775|ref|ZP_15903127.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii IS-123]
gi|421623434|ref|ZP_16064319.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii OIFC074]
gi|421632436|ref|ZP_16073089.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii Naval-13]
gi|421641762|ref|ZP_16082293.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii IS-235]
gi|421647938|ref|ZP_16088349.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii IS-251]
gi|421657048|ref|ZP_16097329.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii Naval-83]
gi|421698459|ref|ZP_16138001.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii IS-58]
gi|421795815|ref|ZP_16231890.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii Naval-21]
gi|421802480|ref|ZP_16238430.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii WC-A-694]
gi|169147152|emb|CAM85011.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter
baumannii AYE]
gi|213987633|gb|ACJ57932.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii AB307-0294]
gi|332730761|gb|EGJ62071.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii 6013150]
gi|332731443|gb|EGJ62735.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii 6013113]
gi|395522646|gb|EJG10735.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii OIFC137]
gi|395564892|gb|EJG26543.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii OIFC109]
gi|400213643|gb|EJO44597.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii IS-123]
gi|404572759|gb|EKA77801.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii IS-58]
gi|408514514|gb|EKK16120.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii IS-235]
gi|408516132|gb|EKK17711.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii IS-251]
gi|408693220|gb|EKL38830.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii OIFC074]
gi|408709164|gb|EKL54419.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii Naval-13]
gi|408714614|gb|EKL59754.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii Naval-83]
gi|410400966|gb|EKP53128.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii Naval-21]
gi|410414788|gb|EKP66582.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii WC-A-694]
Length = 434
Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 46/119 (38%), Positives = 68/119 (57%), Gaps = 13/119 (10%)
Query: 28 DRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 87
D I+ D PC+ +GV+RR+PDI LR+ +DI + + +IL ++W+ LK GG LL++TCS
Sbjct: 317 DCIVLDAPCSATGVIRRHPDIRLLRQSSDIAQTIELQKQILEHMWQQLKVGGTLLYITCS 376
Query: 88 LWFEESEEQAIIFSKNHKDSIRLNSPG----------QLLPTVNKKQDYDGFFYSLFQK 136
+ E+E+Q I F H D+ + QLLP + Q DGF+Y QK
Sbjct: 377 ILKSENEQQMINFFTEHPDAKEVKIEADWGIEQVHGRQLLP---EAQSGDGFYYCKIQK 432
>gi|333368846|ref|ZP_08461001.1| rRNA (cytosine-C(5)-)-methyltransferase [Psychrobacter sp.
1501(2011)]
gi|332976014|gb|EGK12885.1| rRNA (cytosine-C(5)-)-methyltransferase [Psychrobacter sp.
1501(2011)]
Length = 530
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 39/82 (47%), Positives = 55/82 (67%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FD IL D PCT +GV+RR+PDI LR + D++ ++ +IL+NLW LK GG L+VTC
Sbjct: 385 FDAILLDAPCTATGVIRRHPDITLLRTEEDVQHTAQLQEQILDNLWPQLKVGGYFLYVTC 444
Query: 87 SLWFEESEEQAIIFSKNHKDSI 108
S+ +E+ EQ F K H D++
Sbjct: 445 SILKQENVEQMQAFLKRHMDAV 466
>gi|297519395|ref|ZP_06937781.1| 16S rRNA methyltransferase B [Escherichia coli OP50]
Length = 161
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 62/97 (63%), Gaps = 2/97 (2%)
Query: 13 KKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNN 70
K+ + R+ ++ + FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+
Sbjct: 47 KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDA 106
Query: 71 LWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 107
+W LK GG L++ TCS+ EE+ Q F + D+
Sbjct: 107 IWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTADA 143
>gi|288958791|ref|YP_003449132.1| tRNA/rRNA cytosine-C5-methylase [Azospirillum sp. B510]
gi|288911099|dbj|BAI72588.1| tRNA/rRNA cytosine-C5-methylase [Azospirillum sp. B510]
Length = 474
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 48/148 (32%), Positives = 77/148 (52%), Gaps = 15/148 (10%)
Query: 6 IESSDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSC 65
IE+ + + + + +K K FDR+L D PC+G+G RRNPD W + +++L
Sbjct: 299 IEAHPLTSERDPWVKRHKRK-FDRVLVDAPCSGTGTWRRNPDARWRQLGPGLEQLLPLQA 357
Query: 66 KILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSI-----------RLNSP- 113
IL++ +++KPGG+L++ TCSL +E+E Q F + H D I P
Sbjct: 358 NILDSAARLVKPGGRLIYATCSLLHDENEAQVEAFLQTHHDFIVKPIAEVWAEEEAGPPP 417
Query: 114 --GQLLPTVNKKQDYDGFFYSLFQKRKE 139
G L + D DGFF ++ ++R E
Sbjct: 418 VEGPYLRLTPARHDTDGFFAAVLERRGE 445
>gi|421787561|ref|ZP_16223907.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii Naval-82]
gi|410406762|gb|EKP58763.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii Naval-82]
Length = 434
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 47/119 (39%), Positives = 67/119 (56%), Gaps = 13/119 (10%)
Query: 28 DRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 87
D I+ D PC+ +GV+RR+PDI LR+ +DI + + +IL +W+ LK GG LL++TCS
Sbjct: 317 DCIVLDAPCSATGVIRRHPDIRLLRQSSDIAQTIELQKQILEQMWQQLKVGGTLLYITCS 376
Query: 88 LWFEESEEQAIIFSKNHKDS----------IRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
+ E+E+Q I F H D+ I QLLP + Q DGF+Y QK
Sbjct: 377 ILKSENEQQMINFFTEHADAKEVKIETDWGIEQAYGRQLLP---EAQSGDGFYYCKIQK 432
>gi|54295430|ref|YP_127845.1| hypothetical protein lpl2516 [Legionella pneumophila str. Lens]
gi|53755262|emb|CAH16756.1| hypothetical protein lpl2516 [Legionella pneumophila str. Lens]
Length = 427
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 47/120 (39%), Positives = 67/120 (55%), Gaps = 13/120 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+ DI LR +I +S+ +LN+LW +L PGG +++ TC
Sbjct: 308 FDRILLDAPCSATGVIRRHSDIKLLRTDEEISAISQVQSSMLNSLWPLLAPGGLMVYATC 367
Query: 87 SLWFEESEEQAIIFSKNHKDSI---------RLNSPG-QLLPTVNKKQDYDGFFYSLFQK 136
S+ +E+E Q F H D R G Q+LP + DGFFYS+ +K
Sbjct: 368 SIMSDENELQIARFVAEHSDCQVSDGKWSWGRWTGHGQQILP---GEHGMDGFFYSVLRK 424
>gi|148358673|ref|YP_001249880.1| rRNA methyltransferase [Legionella pneumophila str. Corby]
gi|296108237|ref|YP_003619938.1| Sun protein [Legionella pneumophila 2300/99 Alcoy]
gi|148280446|gb|ABQ54534.1| rRNA methyltransferase (SUN protein) [Legionella pneumophila str.
Corby]
gi|295650139|gb|ADG25986.1| Sun protein [Legionella pneumophila 2300/99 Alcoy]
Length = 427
Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 47/120 (39%), Positives = 67/120 (55%), Gaps = 13/120 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+ DI LR +I +S+ +LN+LW +L PGG +++ TC
Sbjct: 308 FDRILLDAPCSATGVIRRHSDIKLLRTDEEISAISQVQSSMLNSLWPLLAPGGLMVYATC 367
Query: 87 SLWFEESEEQAIIFSKNHKDSI---------RLNSPG-QLLPTVNKKQDYDGFFYSLFQK 136
S+ +E+E Q F H D R G Q+LP + DGFFYS+ +K
Sbjct: 368 SIMSDENELQIARFVAEHSDCQVSDGKWSWGRWTGHGQQILP---GEHGMDGFFYSVLRK 424
>gi|224369793|ref|YP_002603957.1| protein RsmB [Desulfobacterium autotrophicum HRM2]
gi|223692510|gb|ACN15793.1| RsmB [Desulfobacterium autotrophicum HRM2]
Length = 455
Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 50/119 (42%), Positives = 63/119 (52%), Gaps = 6/119 (5%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
N FDR+L D PCTG GV+RRNPD W R DIK+L+ +ILNNL ++KPGG L++
Sbjct: 336 NTPFDRVLVDAPCTGLGVLRRNPDARWRRTLGDIKRLADLQKRILNNLADLVKPGGILVY 395
Query: 84 VTCSLWFEESEEQAIIFSKNHKD------SIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
CS EE+E F N K S L S + T DGFF + +K
Sbjct: 396 AVCSCEPEENEGVIDWFLNNQKSFALVPQSHDLASQDGIFKTYPHPLGMDGFFAATMKK 454
>gi|357416612|ref|YP_004929632.1| 16S rRNA methyltransferase B [Pseudoxanthomonas spadix BD-a59]
gi|355334190|gb|AER55591.1| 16S rRNA methyltransferase B [Pseudoxanthomonas spadix BD-a59]
Length = 433
Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 43/118 (36%), Positives = 64/118 (54%), Gaps = 9/118 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FD +L D PC+ +G+VRR PD+ RR++DI LS ++L+ W +L+PGG L++ TC
Sbjct: 314 FDAVLLDAPCSATGIVRRQPDVLLHRRQDDIAALSALQARLLDAAWAVLRPGGTLVYATC 373
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPGQLL--------PTVNKKQDYDGFFYSLFQK 136
SL EE+ Q F H D+ + + PG + + DGFFY+ K
Sbjct: 374 SLLVEENAGQIDAFLTRHVDA-QADDPGPAFGHASGAGRQRLTGEDGMDGFFYARLHK 430
>gi|397668266|ref|YP_006509803.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Legionella
pneumophila subsp. pneumophila]
gi|395131677|emb|CCD09970.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Legionella
pneumophila subsp. pneumophila]
Length = 426
Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 47/120 (39%), Positives = 67/120 (55%), Gaps = 13/120 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+ DI LR +I +S+ +LN+LW +L PGG +++ TC
Sbjct: 307 FDRILLDAPCSATGVIRRHSDIKLLRTDEEISAISQVQSSMLNSLWPLLAPGGLMVYATC 366
Query: 87 SLWFEESEEQAIIFSKNHKDSI---------RLNSPG-QLLPTVNKKQDYDGFFYSLFQK 136
S+ +E+E Q F H D R G Q+LP + DGFFYS+ +K
Sbjct: 367 SIMSDENELQIARFVAEHPDCQVSDGKWSWGRWTGHGQQILP---GEHGMDGFFYSVLRK 423
>gi|408374189|ref|ZP_11171878.1| tRNA and rRNA cytosine-C5-methylase [Alcanivorax hongdengensis
A-11-3]
gi|407765850|gb|EKF74298.1| tRNA and rRNA cytosine-C5-methylase [Alcanivorax hongdengensis
A-11-3]
Length = 432
Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 41/120 (34%), Positives = 67/120 (55%), Gaps = 13/120 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FD IL D PC+ +G++RR PD+ W R+++D+ L+ ++L+ LW +LKPGG L++ TC
Sbjct: 311 FDAILLDAPCSATGILRRQPDVRWHRKRSDLTALADLQARMLDALWPLLKPGGMLVYATC 370
Query: 87 SLWFEESEEQAIIFSKNHKD----------SIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
S+ +E++ Q F D + + + QL P + Q DGF+ + QK
Sbjct: 371 SVLRQENDRQVEAFLARQPDAQDVTPRPEEATMVAAGWQLFP---RAQGPDGFYVACLQK 427
>gi|240102589|ref|YP_002958898.1| SAM-dependent tRNA/rRNA cytosine-C5 methylase [Thermococcus
gammatolerans EJ3]
gi|239910143|gb|ACS33034.1| SAM-dependent tRNA/rRNA cytosine-C5 methylase [Thermococcus
gammatolerans EJ3]
Length = 443
Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 46/126 (36%), Positives = 72/126 (57%), Gaps = 8/126 (6%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
F K DR+L D PCT G + +NP++ W R+ +I K+ + +++ + WK+LKPGG+
Sbjct: 316 FLGEKIADRVLLDAPCTSDGTIAKNPELRWRLREKNIPKVVQLQKELIESAWKLLKPGGR 375
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDS--IRLNSPGQ--LLPTVNK----KQDYDGFFYS 132
LL+ TCS+ EE+EE F + H D+ + LN P LP + + GFFY+
Sbjct: 376 LLYSTCSMLSEENEEVVRWFLERHDDARLVPLNGPYDEGFLPGTMRAWPHRHRTIGFFYA 435
Query: 133 LFQKRK 138
L +K +
Sbjct: 436 LIEKAR 441
>gi|419845609|ref|ZP_14368876.1| ribosomal RNA small subunit methyltransferase B [Haemophilus
parainfluenzae HK2019]
gi|386415477|gb|EIJ30009.1| ribosomal RNA small subunit methyltransferase B [Haemophilus
parainfluenzae HK2019]
Length = 445
Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 48/120 (40%), Positives = 66/120 (55%), Gaps = 12/120 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR++ DI +L +IL LW LKP G LL+ TC
Sbjct: 327 FDRILLDAPCSATGVIRRHPDIKWLRQETDIAQLVALQRQILKALWAKLKPNGILLYATC 386
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPG---------QLLPTVNKKQDYDGFFYSLFQKR 137
S+ +E+ +Q F + + P Q LP N DGF+Y+ +KR
Sbjct: 387 SVLPDENSQQIQRFLAETSNVELMPLPFEQTENTIGIQFLPQENGG---DGFYYAKLRKR 443
>gi|386720123|ref|YP_006186449.1| ribosomal RNA small subunit methyltransferase B [Stenotrophomonas
maltophilia D457]
gi|384079685|emb|CCH14287.1| Ribosomal RNA small subunit methyltransferase B [Stenotrophomonas
maltophilia D457]
Length = 443
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 45/118 (38%), Positives = 62/118 (52%), Gaps = 8/118 (6%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FD IL D PC+ +GV+RR PD+ + RR DI L ++L W ML+PGG LL+ TC
Sbjct: 324 FDAILLDAPCSATGVIRRQPDVMFHRRAEDIDALVGVQARLLEACWSMLRPGGVLLYATC 383
Query: 87 SLWFEESEEQAIIFSKNHKDSIR--------LNSPGQLLPTVNKKQDYDGFFYSLFQK 136
S+ E+ +Q F K H D++ L+ G + D DGFFY+ K
Sbjct: 384 SILRAENIDQVRAFLKWHPDAVAQPLDDRFGLDCEGIARQRLPGDSDADGFFYARLLK 441
>gi|419802936|ref|ZP_14328116.1| ribosomal RNA small subunit methyltransferase B [Haemophilus
parainfluenzae HK262]
gi|385189176|gb|EIF36645.1| ribosomal RNA small subunit methyltransferase B [Haemophilus
parainfluenzae HK262]
Length = 445
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 48/120 (40%), Positives = 66/120 (55%), Gaps = 12/120 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR++ DI +L +IL LW LKP G LL+ TC
Sbjct: 327 FDRILLDAPCSATGVIRRHPDIKWLRQETDIAQLVALQRQILKALWAKLKPNGILLYATC 386
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPG---------QLLPTVNKKQDYDGFFYSLFQKR 137
S+ +E+ +Q F + + P Q LP N DGF+Y+ +KR
Sbjct: 387 SVLPDENSQQIQRFLAETSNVELMPLPFEQTENTIGIQFLPQENGG---DGFYYAKLRKR 443
>gi|408821888|ref|ZP_11206778.1| 16S rRNA methyltransferase B [Pseudomonas geniculata N1]
Length = 443
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 48/121 (39%), Positives = 65/121 (53%), Gaps = 14/121 (11%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FD IL D PC+ +GV+RR PD+ + RR DI L ++L W ML+PGG LL+ TC
Sbjct: 324 FDAILLDAPCSATGVIRRQPDVMFHRRAEDIDALVGVQARLLEACWSMLRPGGVLLYATC 383
Query: 87 SLWFEESEEQAIIFSKNHKDSIR--------LNSPG---QLLPTVNKKQDYDGFFYSLFQ 135
S+ E+ +Q F K H D++ ++ G Q LP N D DGFFY+
Sbjct: 384 SILRAENIDQVRAFLKWHPDAVAQPLGDAFGVDCEGVARQRLPGEN---DADGFFYARLL 440
Query: 136 K 136
K
Sbjct: 441 K 441
>gi|194367355|ref|YP_002029965.1| sun protein [Stenotrophomonas maltophilia R551-3]
gi|194350159|gb|ACF53282.1| sun protein [Stenotrophomonas maltophilia R551-3]
Length = 443
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 48/121 (39%), Positives = 65/121 (53%), Gaps = 14/121 (11%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FD IL D PC+ +GV+RR PD+ + RR DI L ++L W ML+PGG LL+ TC
Sbjct: 324 FDAILLDAPCSATGVIRRQPDVMFHRRAEDIDALVGVQARLLEACWSMLRPGGVLLYATC 383
Query: 87 SLWFEESEEQAIIFSKNHKDSIR--------LNSPG---QLLPTVNKKQDYDGFFYSLFQ 135
S+ E+ +Q F K H D++ ++ G Q LP N D DGFFY+
Sbjct: 384 SILRAENIDQVRAFLKWHPDAVAQPLGDAFGVDCEGVARQRLPGEN---DADGFFYARLL 440
Query: 136 K 136
K
Sbjct: 441 K 441
>gi|418522004|ref|ZP_13088043.1| 16S rRNA methyltransferase B [Xanthomonas axonopodis pv.
malvacearum str. GSPB2388]
gi|410701628|gb|EKQ60146.1| 16S rRNA methyltransferase B [Xanthomonas axonopodis pv.
malvacearum str. GSPB2388]
Length = 436
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 46/127 (36%), Positives = 69/127 (54%), Gaps = 15/127 (11%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FD +L D PC+ +GVVRR PD+ RR +DI+ L ++L+ W+ L+PGG+
Sbjct: 312 WWNGRPFDAVLLDAPCSATGVVRRQPDVLLHRRADDIEALCALQARLLDATWRTLRPGGQ 371
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPG-----------QLLPTVNKKQDYDGF 129
LL+ TCSL E++ Q F + D+ R + G Q P +Q DGF
Sbjct: 372 LLYTTCSLLARENQAQVEAFLQRTPDA-RAQTLGAQFGHAAGAGRQRFP---GEQHCDGF 427
Query: 130 FYSLFQK 136
FY+L K
Sbjct: 428 FYALLLK 434
>gi|91774564|ref|YP_544320.1| Fmu (Sun) [Methylobacillus flagellatus KT]
gi|91708551|gb|ABE48479.1| Fmu (Sun) [Methylobacillus flagellatus KT]
Length = 416
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 65/124 (52%), Gaps = 12/124 (9%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
N F+R+L D PC+G G +RRNPD+ W + DI +L IL K++K GG+L++
Sbjct: 290 NGKFNRVLVDAPCSGLGTLRRNPDLKWKQTPEDIAELVAKQTAILQRAAKLVKAGGRLVY 349
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSIRLNS------------PGQLLPTVNKKQDYDGFFY 131
TCSL EE+E+ A F H +N+ G L + + + DGFF
Sbjct: 350 ATCSLLAEENEQVAEAFLSAHPQFTLINATEILAQQQVELDTGTYLKLLPHQHETDGFFA 409
Query: 132 SLFQ 135
++F+
Sbjct: 410 AVFE 413
>gi|311107260|ref|YP_003980113.1| NOL1/NOP2/sun family protein [Achromobacter xylosoxidans A8]
gi|310761949|gb|ADP17398.1| NOL1/NOP2/sun family protein [Achromobacter xylosoxidans A8]
Length = 809
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 46/124 (37%), Positives = 71/124 (57%), Gaps = 13/124 (10%)
Query: 29 RILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSL 88
R+L D PC+G G +RRNPD+ W + + +L + +ILN+ + + PGG+L++ TCSL
Sbjct: 643 RVLVDAPCSGIGTLRRNPDLKWRQHPEALAELGQLQERILNSAARCVAPGGRLVYATCSL 702
Query: 89 WFEESEEQAIIFSKNHKDSIRLNSPGQLL----------PTVNKKQDY---DGFFYSLFQ 135
EE+E QA F +H D RL++ L P V + D DGFF ++F+
Sbjct: 703 LAEENEVQAERFLASHPDFERLDAAEILAARCETLKLDGPYVQLRPDVHGTDGFFAAVFE 762
Query: 136 KRKE 139
+RK+
Sbjct: 763 RRKK 766
>gi|262376795|ref|ZP_06070022.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
lwoffii SH145]
gi|262308140|gb|EEY89276.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
lwoffii SH145]
Length = 435
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 45/119 (37%), Positives = 65/119 (54%), Gaps = 13/119 (10%)
Query: 28 DRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 87
D I+ D PC+ GV+RR+PDI LR DI + + +IL N+W+ LK GG LL++TCS
Sbjct: 318 DCIVLDAPCSAIGVIRRHPDIRLLRHSTDIPQTVQLQKQILENMWQQLKVGGTLLYITCS 377
Query: 88 LWFEESEEQAIIFSKNHKDSIRLNSPG----------QLLPTVNKKQDYDGFFYSLFQK 136
+ E+E+Q + F H D+ + QLLP ++ DGFFY +K
Sbjct: 378 ILKAENEQQMVEFFAQHADAKEIKIEADWGIEQIHGRQLLPKADQG---DGFFYCRIEK 433
>gi|54298582|ref|YP_124951.1| hypothetical protein lpp2646 [Legionella pneumophila str. Paris]
gi|53752367|emb|CAH13799.1| hypothetical protein lpp2646 [Legionella pneumophila str. Paris]
Length = 427
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 47/120 (39%), Positives = 67/120 (55%), Gaps = 13/120 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+ DI LR +I +S+ +LN+LW +L PGG +++ TC
Sbjct: 308 FDRILLDAPCSATGVIRRHSDIKLLRTDEEISAISQVQSSMLNSLWPLLAPGGLMVYATC 367
Query: 87 SLWFEESEEQAIIFSKNHKDSI---------RLNSPG-QLLPTVNKKQDYDGFFYSLFQK 136
S+ +E+E Q F H D R G Q+LP + DGFFYS+ +K
Sbjct: 368 SIMSDENELQISRFVAEHPDCQVSDGKWSWGRWTGHGQQILP---GEHGMDGFFYSVLRK 424
>gi|359796242|ref|ZP_09298846.1| NOL1/NOP2/sun family protein [Achromobacter arsenitoxydans SY8]
gi|359365761|gb|EHK67454.1| NOL1/NOP2/sun family protein [Achromobacter arsenitoxydans SY8]
Length = 559
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 45/127 (35%), Positives = 73/127 (57%), Gaps = 19/127 (14%)
Query: 29 RILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSL 88
R+L D PC+G G +RRNPD+ W + + +L++ +ILN+ + + PGG+L++ TCSL
Sbjct: 398 RVLVDAPCSGIGTLRRNPDLKWRQHPEALAELAQLQERILNSAARCVAPGGRLVYATCSL 457
Query: 89 WFEESEEQAIIFSKNHKD---------------SIRLNSPG-QLLPTVNKKQDYDGFFYS 132
EE+E QA F +H D +++L P QL P V+ DGFF +
Sbjct: 458 LAEENEAQADRFLASHPDFERVDAAEILAARCETLKLEGPYVQLRPDVHGT---DGFFAA 514
Query: 133 LFQKRKE 139
+F+++K+
Sbjct: 515 VFERKKK 521
>gi|430376206|ref|ZP_19430609.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella macacae
0408225]
gi|429541437|gb|ELA09465.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella macacae
0408225]
Length = 483
Score = 86.3 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 51/144 (35%), Positives = 73/144 (50%), Gaps = 11/144 (7%)
Query: 3 AGEIESSDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSK 62
A ++D N+ N K FD ++ D PCT +GV+RR+PDI L+ DI K
Sbjct: 339 ATNFNTADFNRTDFNDTEL-NAKPFDVVILDAPCTATGVIRRHPDIGLLKTATDITNTVK 397
Query: 63 YSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS----IRLNSPGQLLP 118
IL NLW+ + G LL++TCSL E+ EQ F N+ D+ L+ P Q+
Sbjct: 398 LQADILQNLWQNVATNGYLLYITCSLLKIENSEQMQNFLANNPDANLVDFTLDLPNQIKQ 457
Query: 119 TVN------KKQDYDGFFYSLFQK 136
T+ + DGF+Y+L QK
Sbjct: 458 TIGYQCLPLNEHSGDGFYYALLQK 481
>gi|424744900|ref|ZP_18173181.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii WC-141]
gi|422942533|gb|EKU37581.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii WC-141]
Length = 434
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 46/119 (38%), Positives = 67/119 (56%), Gaps = 13/119 (10%)
Query: 28 DRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 87
D I+ D PC+ +GV+RR+PDI LR+ DI + + +IL ++W+ LK GG LL++TCS
Sbjct: 317 DCIVLDAPCSATGVIRRHPDIRLLRQSGDIAQTIELQKQILEHMWQQLKVGGTLLYITCS 376
Query: 88 LWFEESEEQAIIFSKNHKDSIRLNSPG----------QLLPTVNKKQDYDGFFYSLFQK 136
+ E+E+Q I F H D+ + QLLP + Q DGF+Y QK
Sbjct: 377 VLKAENEQQMINFFAEHIDAKEIKIEANWGLEQIHGRQLLP---QAQSGDGFYYCKIQK 432
>gi|397665183|ref|YP_006506721.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Legionella
pneumophila subsp. pneumophila]
gi|395128594|emb|CCD06812.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Legionella
pneumophila subsp. pneumophila]
Length = 427
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 47/120 (39%), Positives = 67/120 (55%), Gaps = 13/120 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+ DI LR +I +S+ +LN+LW +L PGG +++ TC
Sbjct: 308 FDRILLDAPCSATGVIRRHSDIKLLRTDEEISAISQIQSSMLNSLWPLLAPGGLMVYATC 367
Query: 87 SLWFEESEEQAIIFSKNHKDSI---------RLNSPG-QLLPTVNKKQDYDGFFYSLFQK 136
S+ +E+E Q F H D R G Q+LP + DGFFYS+ +K
Sbjct: 368 SIMSDENELQIARFVAEHPDCQVSDGKWSWGRWAGHGQQILP---GEHGMDGFFYSVLRK 424
>gi|389795253|ref|ZP_10198383.1| ribosomal RNA small subunit methyltransferase RsmB [Rhodanobacter
fulvus Jip2]
gi|388431030|gb|EIL88134.1| ribosomal RNA small subunit methyltransferase RsmB [Rhodanobacter
fulvus Jip2]
Length = 434
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 44/127 (34%), Positives = 72/127 (56%), Gaps = 13/127 (10%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++K + FDRIL D PC+ +GV+RR PD+ RR++DI + +IL LW +L PGG+
Sbjct: 309 WWKGQPFDRILIDAPCSATGVLRRRPDVRLHRRESDIAAMHAQQRRILAALWPLLAPGGR 368
Query: 81 LLFVTCSLWFEESEE--QAIIFSKNHKDSIRLNSPG--------QLLPTVNKKQDYDGFF 130
L+++TCS+ E+E ++ ++ +I P Q+LP D DG +
Sbjct: 369 LVYITCSVLRAENEAIVAELLAAQPDAQAIAFTLPAGQAAGVGWQILP---GDGDLDGMY 425
Query: 131 YSLFQKR 137
Y++ +KR
Sbjct: 426 YAVIEKR 432
>gi|270157755|ref|ZP_06186412.1| ribosomal RNA small subunit methyltransferase B [Legionella
longbeachae D-4968]
gi|289163976|ref|YP_003454114.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Legionella
longbeachae NSW150]
gi|269989780|gb|EEZ96034.1| ribosomal RNA small subunit methyltransferase B [Legionella
longbeachae D-4968]
gi|288857149|emb|CBJ10965.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Legionella
longbeachae NSW150]
Length = 458
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 51/134 (38%), Positives = 77/134 (57%), Gaps = 14/134 (10%)
Query: 16 NNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKML 75
+N +++ K FDRIL D PC+ +GV+RR+ DI LR +I ++K +L++LW +L
Sbjct: 328 SNPSQWWDGKLFDRILLDAPCSATGVIRRHSDIKLLRNDEEIATITKIQHTMLSSLWPLL 387
Query: 76 KPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS--IRLNSP--------GQLLPTVNKKQD 125
GG L++ TCS+ E+E+Q F KN+ D I + P Q+LP +Q
Sbjct: 388 TKGGLLVYATCSVMLAENEQQIANFIKNNPDCNLITKSWPWGHTTKYGQQILP---GEQC 444
Query: 126 YDGFFYS-LFQKRK 138
DGFFY+ LF+ K
Sbjct: 445 MDGFFYAVLFKDEK 458
>gi|297537449|ref|YP_003673218.1| Fmu (Sun) domain-containing protein [Methylotenera versatilis 301]
gi|297256796|gb|ADI28641.1| Fmu (Sun) domain protein [Methylotenera versatilis 301]
Length = 531
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 48/143 (33%), Positives = 75/143 (52%), Gaps = 13/143 (9%)
Query: 6 IESSDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSC 65
+ + I+ +T+ + + K FDR+L D PCTG G +RRNPD+ W + D+ +L+
Sbjct: 282 LNAQSISSETDPKLKRLNGK-FDRVLVDAPCTGLGTLRRNPDLKWRQTPQDLAELTVKQA 340
Query: 66 KILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSP------------ 113
IL K+ K GG+L++ TCSL +E+E+ A F H D LN+
Sbjct: 341 NILARASKLTKTGGRLIYSTCSLLRDENEQIAENFLATHPDFKLLNAAEILKQQQINLDT 400
Query: 114 GQLLPTVNKKQDYDGFFYSLFQK 136
G L + + DGFF ++F+K
Sbjct: 401 GDYLKLLPHLHNTDGFFAAVFEK 423
>gi|381170712|ref|ZP_09879866.1| ribosomal RNA small subunit methyltransferase B [Xanthomonas citri
pv. mangiferaeindicae LMG 941]
gi|380688764|emb|CCG36353.1| ribosomal RNA small subunit methyltransferase B [Xanthomonas citri
pv. mangiferaeindicae LMG 941]
Length = 436
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 46/127 (36%), Positives = 69/127 (54%), Gaps = 15/127 (11%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
++ + FD +L D PC+ +GVVRR PD+ RR +DI+ L ++L+ W+ L+PGG+
Sbjct: 312 WWNGRPFDAVLLDAPCSATGVVRRQPDVLLHRRADDIEALCALQARLLDATWRTLRPGGQ 371
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPG-----------QLLPTVNKKQDYDGF 129
LL+ TCSL E++ Q F + D+ R + G Q P +Q DGF
Sbjct: 372 LLYTTCSLLARENQAQLEAFLQRTPDA-RAQTLGAQFGHAAGAGRQRFP---GEQHCDGF 427
Query: 130 FYSLFQK 136
FY+L K
Sbjct: 428 FYALLLK 434
>gi|255034881|ref|YP_003085502.1| Fmu (Sun) domain-containing protein [Dyadobacter fermentans DSM
18053]
gi|254947637|gb|ACT92337.1| Fmu (Sun) domain protein [Dyadobacter fermentans DSM 18053]
Length = 410
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 65/110 (59%), Gaps = 3/110 (2%)
Query: 28 DRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 87
DR+L D+PC+G GV+RRNPD W + + K+ K +IL N KM+K GGK+++ TCS
Sbjct: 302 DRLLLDVPCSGLGVLRRNPDSKWKLKPEFLDKIRKVQAQILENYSKMVKKGGKMVYATCS 361
Query: 88 LWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
+ ESEEQ F K H+ S + P + +DGF+ +L +++
Sbjct: 362 ILPSESEEQVRSFMKRHQADWNFVSEHRSSPA---RDGFDGFYMALLERK 408
>gi|326793335|ref|YP_004311155.1| sun protein [Marinomonas mediterranea MMB-1]
gi|326544099|gb|ADZ89319.1| sun protein [Marinomonas mediterranea MMB-1]
Length = 452
Score = 85.9 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 47/128 (36%), Positives = 73/128 (57%), Gaps = 21/128 (16%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
F+++L D PC+ +GV+RRNPDI R+ DI +L + +L+N+W++++ GG LL+ TC
Sbjct: 323 FNKVLLDAPCSATGVIRRNPDIKINRKPADISELVEIQSTLLDNVWQVVEEGGYLLYATC 382
Query: 87 SLWFEESEEQAIIFSKNHKDSIR--LNSPG----------------QLLPTVNKKQDYDG 128
S+ EE+ EQ F +++ LN+ QLLP K+ +DG
Sbjct: 383 SIMPEENSEQVDRFLARTSNALEVPLNTINSGFAMNISNAKTDHGIQLLP---KRDGHDG 439
Query: 129 FFYSLFQK 136
F+Y LFQK
Sbjct: 440 FYYCLFQK 447
>gi|392957476|ref|ZP_10322999.1| 16S rRNA methyltransferase B [Bacillus macauensis ZFHKF-1]
gi|391876439|gb|EIT85036.1| 16S rRNA methyltransferase B [Bacillus macauensis ZFHKF-1]
Length = 457
Score = 85.9 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 43/123 (34%), Positives = 71/123 (57%), Gaps = 15/123 (12%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PCTG GV+R+ PD+ W +++ DI ++S +ILN++ +LKPGG L++ TC
Sbjct: 323 FDRILVDAPCTGFGVIRKKPDLKWSKKEEDIHRISTIQMEILNSVATLLKPGGTLVYSTC 382
Query: 87 SLWFEESEEQAIIFSKNHKD-----SIRLNSPGQLLPTVNKKQ----------DYDGFFY 131
++ EE++E A F H + S + P + P ++ ++ + DGF+
Sbjct: 383 TVDHEENQEVAQQFLATHPEFTWDQSFQARMPEVVKPYMDPEEAQVQILPHYFNSDGFYL 442
Query: 132 SLF 134
+ F
Sbjct: 443 ACF 445
>gi|297583987|ref|YP_003699767.1| sun protein [Bacillus selenitireducens MLS10]
gi|297142444|gb|ADH99201.1| sun protein [Bacillus selenitireducens MLS10]
Length = 457
Score = 85.9 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 45/126 (35%), Positives = 68/126 (53%), Gaps = 15/126 (11%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FD IL D PC+G GV++R PD+ W + + DI++L+ +IL +W +LKPGG+L++ TC
Sbjct: 328 FDCILVDAPCSGLGVIQRKPDLKWTKSERDIERLTVIQGEILKQVWPLLKPGGRLVYSTC 387
Query: 87 SLWFEESEEQAIIFSKNHKDSI-------RLNSPGQLLPTVNK--------KQDYDGFFY 131
++ +EE+E Q F D+ RL P Q N+ + DGFF
Sbjct: 388 TIDYEENEGQVTHFVNETADADFEADFLNRLPEPVQTSSFANQSGIQLIPGQYGTDGFFM 447
Query: 132 SLFQKR 137
+ KR
Sbjct: 448 TSIVKR 453
>gi|418515522|ref|ZP_13081702.1| 16S rRNA methyltransferase B [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
gi|410707820|gb|EKQ66270.1| 16S rRNA methyltransferase B [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
Length = 436
Score = 85.9 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 46/121 (38%), Positives = 66/121 (54%), Gaps = 15/121 (12%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FD +L D PC+ +GVVRR PD+ RR +DI+ L ++L+ W+ L+PGG+LL+ TC
Sbjct: 318 FDAVLLDAPCSATGVVRRQPDVLLHRRADDIEALCALQARLLDATWRTLRPGGQLLYTTC 377
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPG-----------QLLPTVNKKQDYDGFFYSLFQ 135
SL E++ Q F + D+ R + G Q P +Q DGFFY+L
Sbjct: 378 SLLARENQAQVDAFLQRTPDA-RAQTLGAQFGHAAGAGRQRFP---GEQHCDGFFYALLL 433
Query: 136 K 136
K
Sbjct: 434 K 434
>gi|390990477|ref|ZP_10260762.1| ribosomal RNA small subunit methyltransferase B [Xanthomonas
axonopodis pv. punicae str. LMG 859]
gi|372554800|emb|CCF67737.1| ribosomal RNA small subunit methyltransferase B [Xanthomonas
axonopodis pv. punicae str. LMG 859]
Length = 436
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 46/121 (38%), Positives = 66/121 (54%), Gaps = 15/121 (12%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FD +L D PC+ +GVVRR PD+ RR +DI+ L ++L+ W+ L+PGG+LL+ TC
Sbjct: 318 FDAVLLDAPCSATGVVRRQPDVLLHRRADDIEALCALQARLLDATWRTLRPGGQLLYTTC 377
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPG-----------QLLPTVNKKQDYDGFFYSLFQ 135
SL E++ Q F + D+ R + G Q P +Q DGFFY+L
Sbjct: 378 SLLARENQAQVEAFLQRTPDA-RAQTLGAQFGHAAGAGRQRFP---GEQHCDGFFYALLL 433
Query: 136 K 136
K
Sbjct: 434 K 434
>gi|21244523|ref|NP_644105.1| Sun protein [Xanthomonas axonopodis pv. citri str. 306]
gi|46396950|sp|Q8PG22.1|RSMB_XANAC RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|21110194|gb|AAM38641.1| Sun protein [Xanthomonas axonopodis pv. citri str. 306]
Length = 436
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 46/121 (38%), Positives = 66/121 (54%), Gaps = 15/121 (12%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FD +L D PC+ +GVVRR PD+ RR +DI+ L ++L+ W+ L+PGG+LL+ TC
Sbjct: 318 FDAVLLDAPCSATGVVRRQPDVLLHRRADDIEALCALQARLLDATWRTLRPGGQLLYTTC 377
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPG-----------QLLPTVNKKQDYDGFFYSLFQ 135
SL E++ Q F + D+ R + G Q P +Q DGFFY+L
Sbjct: 378 SLLARENQAQVEAFLQRTPDA-RAQTLGAQFGHAAGAGRQRFP---GEQHCDGFFYALLL 433
Query: 136 K 136
K
Sbjct: 434 K 434
>gi|299768269|ref|YP_003730295.1| tRNA and rRNA cytosine-C5-methylase [Acinetobacter oleivorans DR1]
gi|298698357|gb|ADI88922.1| tRNA and rRNA cytosine-C5-methylase [Acinetobacter oleivorans DR1]
Length = 434
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 13/119 (10%)
Query: 28 DRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 87
D I+ D PC+ +GV+RR+PDI LR+ +DI + + +IL ++W+ L GG LL++TCS
Sbjct: 317 DCIVLDAPCSATGVIRRHPDIRLLRQSSDIAQTIELQKQILEHMWQQLNVGGTLLYITCS 376
Query: 88 LWFEESEEQAIIFSKNHKDSIRLNSPG----------QLLPTVNKKQDYDGFFYSLFQK 136
+ E+E+Q I F H D+ + QLLP + Q DGF+Y QK
Sbjct: 377 VLKAENEQQMINFFAEHSDAKEIKIEANWGLEQIHGRQLLP---QAQSGDGFYYCKIQK 432
>gi|445420249|ref|ZP_21435447.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter sp.
WC-743]
gi|444759039|gb|ELW83524.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter sp.
WC-743]
Length = 435
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 45/119 (37%), Positives = 71/119 (59%), Gaps = 13/119 (10%)
Query: 28 DRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 87
D I+ D PC+ GV+RR+PDI LR+ DI+++ +ILN++W+ LK GG LL++TCS
Sbjct: 318 DCIILDAPCSAIGVMRRHPDIRLLRQSTDIQQVVDLQKQILNHMWQQLKVGGTLLYITCS 377
Query: 88 LWFEESEEQAIIFSKNHKDS--IRLNSP--------GQLLPTVNKKQDYDGFFYSLFQK 136
+ E+E+Q + F H D+ I++++ QLLP + DGF+Y +K
Sbjct: 378 ILKAENEQQMVEFFAEHTDAEEIKIDADWGIEQIHGRQLLPQTDHG---DGFYYCRIKK 433
>gi|403053698|ref|ZP_10908182.1| 16S rRNA methyltransferase B [Acinetobacter bereziniae LMG 1003]
Length = 435
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 45/119 (37%), Positives = 71/119 (59%), Gaps = 13/119 (10%)
Query: 28 DRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 87
D I+ D PC+ GV+RR+PDI LR+ DI+++ +ILN++W+ LK GG LL++TCS
Sbjct: 318 DCIILDAPCSAIGVMRRHPDIRLLRQSTDIQQVVDLQKQILNHMWQQLKVGGTLLYITCS 377
Query: 88 LWFEESEEQAIIFSKNHKDS--IRLNSP--------GQLLPTVNKKQDYDGFFYSLFQK 136
+ E+E+Q + F H D+ I++++ QLLP + DGF+Y +K
Sbjct: 378 ILKAENEQQMVEFFAEHTDAEEIKIDADWGIEQIHGRQLLPQTDHG---DGFYYCRIKK 433
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.138 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,358,367,003
Number of Sequences: 23463169
Number of extensions: 94318183
Number of successful extensions: 209297
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5768
Number of HSP's successfully gapped in prelim test: 1515
Number of HSP's that attempted gapping in prelim test: 200381
Number of HSP's gapped (non-prelim): 7462
length of query: 139
length of database: 8,064,228,071
effective HSP length: 104
effective length of query: 35
effective length of database: 9,919,025,791
effective search space: 347165902685
effective search space used: 347165902685
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 71 (32.0 bits)