BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15213
(139 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SQF|A Chain A, The Crystal Structure Of E. Coli Fmu Binary Complex With
S- Adenosylmethionine At 2.1 A Resolution
pdb|1SQG|A Chain A, The Crystal Structure Of The E. Coli Fmu Apoenzyme At 1.65
A Resolution
Length = 429
Score = 92.0 bits (227), Expect = 1e-19, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>pdb|2YXL|A Chain A, Crystal Structure Of Ph0851
Length = 450
Score = 76.3 bits (186), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 71/119 (59%), Gaps = 8/119 (6%)
Query: 28 DRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 87
D++L D PCT SG + +NP++ W R++ I ++S+ ++L + +++KPGG+LL+ TCS
Sbjct: 332 DKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCS 391
Query: 88 LWFEESEEQAIIFSKNHKD--SIRLNS---PGQLLPTVN---KKQDYDGFFYSLFQKRK 138
++ EE+E+ F H + + L S PG L T+ + GFFY+L +K K
Sbjct: 392 IFKEENEKNIRWFLNVHPEFKLVPLKSPYDPGFLEGTMRAWPHRHSTIGFFYALLEKSK 450
>pdb|2FRX|A Chain A, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
pdb|2FRX|B Chain B, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
pdb|2FRX|C Chain C, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
pdb|2FRX|D Chain D, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
Length = 479
Score = 70.1 bits (170), Expect = 4e-13, Method: Composition-based stats.
Identities = 36/111 (32%), Positives = 61/111 (54%), Gaps = 4/111 (3%)
Query: 27 FDRILADLPCTGSGVVRRNPDI--PWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 84
FD IL D PC+G GVVR++PD W N ++++ +++++ + L+PGG L++
Sbjct: 188 FDAILLDAPCSGEGVVRKDPDALKNWSPESN--QEIAATQRELIDSAFHALRPGGTLVYS 245
Query: 85 TCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQ 135
TC+L EE+E + + + D++ G L P NK +GF + Q
Sbjct: 246 TCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFPGANKALTEEGFLHVFPQ 296
>pdb|1IXK|A Chain A, Crystal Structure Analysis Of Methyltransferase Homolog
Protein From Pyrococcus Horikoshii
Length = 315
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 45/71 (63%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
N FD+IL D PCTGSG + +NP+ W R +DIK ++L ++LKPGG L++
Sbjct: 185 NVEFDKILLDAPCTGSGTIHKNPERKWNRTXDDIKFCQGLQXRLLEKGLEVLKPGGILVY 244
Query: 84 VTCSLWFEESE 94
TCSL EE+E
Sbjct: 245 STCSLEPEENE 255
>pdb|3M6W|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P21212 In Complex
With S-Adenosyl-L- Methionine
Length = 464
Score = 50.1 bits (118), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 44/81 (54%)
Query: 26 YFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 85
YF R+L D PC+G G+ R++ + + K++++ +L ++L PGG L++ T
Sbjct: 170 YFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYST 229
Query: 86 CSLWFEESEEQAIIFSKNHKD 106
C+ EE+E F K H +
Sbjct: 230 CTFAPEENEGVVAHFLKAHPE 250
>pdb|3M6U|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group 43
pdb|3M6U|B Chain B, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group 43
pdb|3M6V|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P2 In Complex With
S-Adenosyl-L- Methionine
pdb|3M6V|B Chain B, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P2 In Complex With
S-Adenosyl-L- Methionine
Length = 464
Score = 50.1 bits (118), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 44/81 (54%)
Query: 26 YFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 85
YF R+L D PC+G G+ R++ + + K++++ +L ++L PGG L++ T
Sbjct: 170 YFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYST 229
Query: 86 CSLWFEESEEQAIIFSKNHKD 106
C+ EE+E F K H +
Sbjct: 230 CTFAPEENEGVVAHFLKAHPE 250
>pdb|3M4X|A Chain A, Structure Of A Ribosomal Methyltransferase
Length = 456
Score = 48.5 bits (114), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 40/70 (57%)
Query: 26 YFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 85
+FDRI+ D PC+G G R++P+ + K +IL++ K LK G+L++ T
Sbjct: 175 FFDRIVVDAPCSGEGXFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKXLKNKGQLIYST 234
Query: 86 CSLWFEESEE 95
C+ EE+EE
Sbjct: 235 CTFAPEENEE 244
>pdb|3M6X|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P21212
Length = 464
Score = 48.1 bits (113), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 42/81 (51%)
Query: 26 YFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 85
YF R+L D PC+G G R++ + + K+ ++ +L ++L PGG L++ T
Sbjct: 170 YFHRVLLDAPCSGEGXFRKDREAARHWGPSAPKRXAEVQKALLAQASRLLGPGGVLVYST 229
Query: 86 CSLWFEESEEQAIIFSKNHKD 106
C+ EE+E F K H +
Sbjct: 230 CTFAPEENEGVVAHFLKAHPE 250
>pdb|3A4T|A Chain A, Crystal Structure Of Atrm4 From M.Jannaschii With
Sinefungin
pdb|3A4T|B Chain B, Crystal Structure Of Atrm4 From M.Jannaschii With
Sinefungin
pdb|3AJD|A Chain A, Crystal Structure Of Atrm4
Length = 274
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Query: 26 YFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 85
+FD+IL D PC+G+ + +N ++ + DIK S ++++ +LK G+L++ T
Sbjct: 156 FFDKILLDAPCSGNIIKDKNRNV----SEEDIKYCSLRQKELIDIGIDLLKKDGELVYST 211
Query: 86 CSLWFEESEE 95
CS+ EE+EE
Sbjct: 212 CSMEVEENEE 221
>pdb|4FZV|A Chain A, Crystal Structure Of The Human Mterf4:nsun4:sam Ternary
Complex
Length = 359
Score = 34.3 bits (77), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 27 FDRILADLPCTG--SGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 84
+DR+L D+PCT + +I RK + + L ++L KPGG +++
Sbjct: 224 YDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYS 283
Query: 85 TCSLWFEESE 94
TCSL ++E
Sbjct: 284 TCSLSHLQNE 293
>pdb|4FP9|A Chain A, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|C Chain C, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|D Chain D, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|F Chain F, Human Mterf4-Nsun4 Protein Complex
Length = 360
Score = 34.3 bits (77), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 27 FDRILADLPCTG--SGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 84
+DR+L D+PCT + +I RK + + L ++L KPGG +++
Sbjct: 225 YDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYS 284
Query: 85 TCSLWFEESE 94
TCSL ++E
Sbjct: 285 TCSLSHLQNE 294
>pdb|3OFJ|A Chain A, Crystal Structure Of N-Methyltransferase Nods From
Bradyrhizobium Japonicum Wm9
pdb|3OFK|A Chain A, Crystal Structure Of N-Methyltransferase Nods From
Bradyrhizobium Japonicum Wm9 In Complex With
S-Adenosyl-L-Homocysteine (Sah)
pdb|3OFK|B Chain B, Crystal Structure Of N-Methyltransferase Nods From
Bradyrhizobium Japonicum Wm9 In Complex With
S-Adenosyl-L-Homocysteine (Sah)
pdb|3OFK|C Chain C, Crystal Structure Of N-Methyltransferase Nods From
Bradyrhizobium Japonicum Wm9 In Complex With
S-Adenosyl-L-Homocysteine (Sah)
pdb|3OFK|D Chain D, Crystal Structure Of N-Methyltransferase Nods From
Bradyrhizobium Japonicum Wm9 In Complex With
S-Adenosyl-L-Homocysteine (Sah)
Length = 216
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 68 LNNLWKMLKPGGKLLF-----VTCSLWFEESEEQAI--IFSKNHKDSIRLNSPGQ 115
++N+ KML PGG L+F TC W + + + I ++ + R+ GQ
Sbjct: 137 IDNMVKMLAPGGHLVFGSARDATCRRWGHVAGAETVITILTEALTEVERVQCQGQ 191
>pdb|1G38|A Chain A, Adenine-Specific Methyltransferase M. Taq IDNA COMPLEX
pdb|1G38|D Chain D, Adenine-Specific Methyltransferase M. Taq IDNA COMPLEX
Length = 393
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 9/75 (12%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLW--------KML 75
+ FD IL + P G + P I + D+ K + + K NL+ ++L
Sbjct: 76 GEAFDLILGNPPYGIVGEASKYP-IHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLL 134
Query: 76 KPGGKLLFVTCSLWF 90
KPGG L+FV + W
Sbjct: 135 KPGGVLVFVVPATWL 149
>pdb|2IBS|A Chain A, Crystal Structure Of The Adenine-Specific Dna
Methyltransferase M.Taqi Complexed With The Cofactor
Analog Aeta And A 10 Bp Dna Containing 2-Aminopurine At
The Target Position
pdb|2IBS|D Chain D, Crystal Structure Of The Adenine-Specific Dna
Methyltransferase M.Taqi Complexed With The Cofactor
Analog Aeta And A 10 Bp Dna Containing 2-Aminopurine At
The Target Position
pdb|2IBT|A Chain A, Crystal Structure Of The Adenine-Specific Dna
Methyltransferase M.Taqi Complexed With The Cofactor
Analog Aeta And A 10 Bp Dna Containing 2- Aminopurine At
The Target Position And An Abasic Site Analog At The
Target Base Partner Position
pdb|2IBT|D Chain D, Crystal Structure Of The Adenine-Specific Dna
Methyltransferase M.Taqi Complexed With The Cofactor
Analog Aeta And A 10 Bp Dna Containing 2- Aminopurine At
The Target Position And An Abasic Site Analog At The
Target Base Partner Position
pdb|2JG3|A Chain A, Mtaqi With Baz
pdb|2JG3|D Chain D, Mtaqi With Baz
pdb|2IH2|A Chain A, Crystal Structure Of The Adenine-Specific Dna
Methyltransferase M.Taqi Complexed With The Cofactor
Analog Aeta And A 10 Bp Dna Containing 5-
Methylpyrimidin-2(1h)-One At The Target Base Partner
Position
pdb|2IH2|D Chain D, Crystal Structure Of The Adenine-Specific Dna
Methyltransferase M.Taqi Complexed With The Cofactor
Analog Aeta And A 10 Bp Dna Containing 5-
Methylpyrimidin-2(1h)-One At The Target Base Partner
Position
pdb|2IH4|A Chain A, Crystal Structure Of The Adenine-Specific Dna
Methyltransferase M.Taqi Complexed With The Cofactor
Analog Aeta And A 10 Bp Dna Containing Pyrrolo-Dc At The
Target Base Partner Position
pdb|2IH4|D Chain D, Crystal Structure Of The Adenine-Specific Dna
Methyltransferase M.Taqi Complexed With The Cofactor
Analog Aeta And A 10 Bp Dna Containing Pyrrolo-Dc At The
Target Base Partner Position
pdb|2IH5|A Chain A, Crystal Structure Of The Adenine-Specific Dna
Methyltransferase M.Taqi Complexed With The Cofactor
Analog Aeta And A 10 Bp Dna Containing An Abasic Site
Analog At The Target Base Partner Position
pdb|2NP6|A Chain A, Crystal Structure Of The Adenine-Specific Dna
Methyltransferase M.Taqi Complexed With The Cofactor
Analog Aeta And A 10 Bp Dna Containing An Abasic Site
Analog At The Target Position
pdb|2NP6|D Chain D, Crystal Structure Of The Adenine-Specific Dna
Methyltransferase M.Taqi Complexed With The Cofactor
Analog Aeta And A 10 Bp Dna Containing An Abasic Site
Analog At The Target Position
pdb|2NP7|A Chain A, Crystal Structure Of The Adenine-Specific Dna
Methyltransferase M.Taqi Complexed With The Cofactor
Analog Aeta And A 10 Bp Dna Containing An Abasic Site
Analog At The Target Position And Pyrrolo-Dc At The
Target Base Partner Position
Length = 421
Score = 26.9 bits (58), Expect = 3.4, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLW--------KMLKPG 78
FD IL + P G + P I + D+ K + + K NL+ ++LKPG
Sbjct: 99 FDLILGNPPYGIVGEASKYP-IHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPG 157
Query: 79 GKLLFVTCSLWF 90
G L+FV + W
Sbjct: 158 GVLVFVVPATWL 169
>pdb|1AQI|A Chain A, Structure Of Adenine-N6-Dna-Methyltransferase Taqi
pdb|1AQI|B Chain B, Structure Of Adenine-N6-Dna-Methyltransferase Taqi
pdb|2ADM|A Chain A, Adenine-N6-Dna-Methyltransferase Taqi
pdb|2ADM|B Chain B, Adenine-N6-Dna-Methyltransferase Taqi
Length = 421
Score = 26.9 bits (58), Expect = 3.4, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLW--------KMLKPG 78
FD IL + P G + P I + D+ K + + K NL+ ++LKPG
Sbjct: 99 FDLILGNPPYGIVGEASKYP-IHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPG 157
Query: 79 GKLLFVTCSLWF 90
G L+FV + W
Sbjct: 158 GVLVFVVPATWL 169
>pdb|1AQJ|A Chain A, Structure Of Adenine-n6-dna-methyltransferase Taqi
pdb|1AQJ|B Chain B, Structure Of Adenine-n6-dna-methyltransferase Taqi
Length = 421
Score = 26.9 bits (58), Expect = 3.5, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLW--------KMLKPG 78
FD IL + P G + P I + D+ K + + K NL+ ++LKPG
Sbjct: 99 FDLILGNPPYGIVGEASKYP-IHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPG 157
Query: 79 GKLLFVTCSLWF 90
G L+FV + W
Sbjct: 158 GVLVFVVPATWL 169
>pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium
Pennivorans, A Keratinolytic Enzyme Related To
Subtilisin
Length = 671
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 41 VVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAII 99
VV+ NPD+ +R+ Y ++ N LW + G VT LW E S I+
Sbjct: 105 VVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEAIG-----VTQQLWEEASGTNIIV 158
>pdb|3ORH|A Chain A, Human Guanidinoacetate N-Methyltransferase With Sah
pdb|3ORH|B Chain B, Human Guanidinoacetate N-Methyltransferase With Sah
pdb|3ORH|C Chain C, Human Guanidinoacetate N-Methyltransferase With Sah
pdb|3ORH|D Chain D, Human Guanidinoacetate N-Methyltransferase With Sah
Length = 236
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 14/57 (24%)
Query: 67 ILNNLWKMLKPGGKLLFVTCSLW--------------FEESEEQAIIFSKNHKDSIR 109
I N+ +++LKPGG L + + W FEE++ A++ + +++IR
Sbjct: 152 IKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRRENIR 208
>pdb|2IIP|A Chain A, Human Nicotinamide N-Methyltransferase
pdb|2IIP|B Chain B, Human Nicotinamide N-Methyltransferase
pdb|2IIP|C Chain C, Human Nicotinamide N-Methyltransferase
pdb|2IIP|D Chain D, Human Nicotinamide N-Methyltransferase
pdb|3ROD|A Chain A, Methyltransferase
pdb|3ROD|B Chain B, Methyltransferase
pdb|3ROD|C Chain C, Methyltransferase
pdb|3ROD|D Chain D, Methyltransferase
Length = 283
Score = 25.8 bits (55), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 65 CKILNNLWKMLKPGGKLLFV 84
C+ L NL +LKPGG L+ +
Sbjct: 196 CRALRNLGSLLKPGGFLVIM 215
>pdb|3EIV|A Chain A, Crystal Structure Of Single-Stranded Dna-Binding Protein
From Streptomyces Coelicolor
pdb|3EIV|B Chain B, Crystal Structure Of Single-Stranded Dna-Binding Protein
From Streptomyces Coelicolor
pdb|3EIV|C Chain C, Crystal Structure Of Single-Stranded Dna-Binding Protein
From Streptomyces Coelicolor
pdb|3EIV|D Chain D, Crystal Structure Of Single-Stranded Dna-Binding Protein
From Streptomyces Coelicolor
Length = 199
Score = 25.8 bits (55), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Query: 69 NNLWKMLKPGGKLLFVTCSLWFEESEEQA 97
N WK G+ LF+TCS+W + +E A
Sbjct: 44 TNEWK----DGESLFLTCSVWRQAAENVA 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,440,438
Number of Sequences: 62578
Number of extensions: 175317
Number of successful extensions: 412
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 392
Number of HSP's gapped (non-prelim): 20
length of query: 139
length of database: 14,973,337
effective HSP length: 89
effective length of query: 50
effective length of database: 9,403,895
effective search space: 470194750
effective search space used: 470194750
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)