BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15213
(139 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A6TEU2|RSMB_KLEP7 Ribosomal RNA small subunit methyltransferase B OS=Klebsiella
pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH
78578) GN=rsmB PE=3 SV=1
Length = 431
Score = 107 bits (268), Expect = 2e-23, Method: Composition-based stats.
Identities = 59/135 (43%), Positives = 84/135 (62%), Gaps = 13/135 (9%)
Query: 13 KKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNN 70
K+ + RF ++ N+ FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +ILN
Sbjct: 300 KQGDGRFPEQWCGNEQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILNA 359
Query: 71 LWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLN------SPGQL-LPTVNKK 123
+W LKPGG L++ TCS+ EE+ +Q F D+ L+ SPGQ LP V
Sbjct: 360 IWGHLKPGGTLVYATCSILPEENSQQIAAFLARTPDA-ELHATGTPASPGQQNLPGV--- 415
Query: 124 QDYDGFFYSLFQKRK 138
++ DGFFY+ KR+
Sbjct: 416 EEGDGFFYAKLIKRR 430
>sp|Q87KD3|RSMB_VIBPA Ribosomal RNA small subunit methyltransferase B OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=rsmB PE=3 SV=1
Length = 427
Score = 107 bits (266), Expect = 3e-23, Method: Composition-based stats.
Identities = 51/127 (40%), Positives = 80/127 (62%), Gaps = 8/127 (6%)
Query: 17 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLK 76
N +++ + FDRIL D PC+ +GV+RR+PDI WLRR +DI L++ +I + +W LK
Sbjct: 303 NPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQSEIFDAMWTQLK 362
Query: 77 PGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFY 131
PGG +++ TCS+ +E+ EQ F D+ L+S PG Q+LP ++D DGF+Y
Sbjct: 363 PGGTMVYATCSITPQENVEQVKAFLARTADAQLLDSDPDQPGRQILP---GEEDMDGFYY 419
Query: 132 SLFQKRK 138
++ K +
Sbjct: 420 AVLTKTR 426
>sp|B5XNC2|RSMB_KLEP3 Ribosomal RNA small subunit methyltransferase B OS=Klebsiella
pneumoniae (strain 342) GN=rsmB PE=3 SV=1
Length = 431
Score = 105 bits (263), Expect = 7e-23, Method: Composition-based stats.
Identities = 56/134 (41%), Positives = 83/134 (61%), Gaps = 11/134 (8%)
Query: 13 KKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNN 70
K+ + RF ++ N+ FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +ILN+
Sbjct: 300 KQGDGRFPEQWCGNEQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILNS 359
Query: 71 LWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLN------SPGQLLPTVNKKQ 124
W+ LKPGG L++ TCS+ EE+ +Q F D+ L+ SPGQ + +
Sbjct: 360 TWEHLKPGGTLVYATCSILPEENSQQISAFLARTPDA-ELHATGTPASPGQ--QNLPGPE 416
Query: 125 DYDGFFYSLFQKRK 138
+ DGFFY+ KR+
Sbjct: 417 EGDGFFYAKLIKRR 430
>sp|Q9KVU5|RSMB_VIBCH Ribosomal RNA small subunit methyltransferase B OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=rsmB PE=3 SV=1
Length = 434
Score = 102 bits (255), Expect = 6e-22, Method: Composition-based stats.
Identities = 49/123 (39%), Positives = 80/123 (65%), Gaps = 8/123 (6%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
++++ + FDRIL D PC+ +GV+RR+PDI WLRR +DI L++ +IL+ +W+ LKPGG
Sbjct: 314 QWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREILDAMWQQLKPGG 373
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS----PG-QLLPTVNKKQDYDGFFYSLF 134
L++ TCS+ +E+ Q F + D+ + S PG Q+LP ++ DGF+Y++
Sbjct: 374 SLVYATCSITPQENRLQVKAFLERTPDARLVGSDPAQPGRQILP---GEEAMDGFYYAVL 430
Query: 135 QKR 137
K+
Sbjct: 431 SKQ 433
>sp|Q7MGK4|RSMB_VIBVY Ribosomal RNA small subunit methyltransferase B OS=Vibrio
vulnificus (strain YJ016) GN=rsmB PE=3 SV=1
Length = 426
Score = 101 bits (251), Expect = 2e-21, Method: Composition-based stats.
Identities = 50/126 (39%), Positives = 76/126 (60%), Gaps = 8/126 (6%)
Query: 17 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLK 76
N ++++ + FDRIL D PC+ +GV+RR+PDI WLRR DI L++ +I + +W LK
Sbjct: 303 NPEQWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRAEDITALAQLQSEIFDAMWAQLK 362
Query: 77 PGGKLLFVTCSLWFEESEEQAIIF-----SKNHKDSIRLNSPGQLLPTVNKKQDYDGFFY 131
PGG L++ TCS+ E+ EQ F + S R N Q+LP ++D DGF+Y
Sbjct: 363 PGGTLVYATCSITPMENVEQVKAFLARTPAAQLVGSERENPGRQILP---GEEDMDGFYY 419
Query: 132 SLFQKR 137
++ K+
Sbjct: 420 AVLVKQ 425
>sp|A7MPE7|RSMB_CROS8 Ribosomal RNA small subunit methyltransferase B OS=Cronobacter
sakazakii (strain ATCC BAA-894) GN=rsmB PE=3 SV=1
Length = 429
Score = 100 bits (249), Expect = 2e-21, Method: Composition-based stats.
Identities = 52/117 (44%), Positives = 71/117 (60%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR +DI +L++ +IL+ +W LKPGG LL+ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDSDINELAQLQSEILDAIWPHLKPGGTLLYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----RLNSPG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ EQ F D+ +PG Q LP + DGFFY+ K+
Sbjct: 376 SVLPEENSEQIRAFLSRTPDAQLDGTGSTQTPGIQNLPGATEG---DGFFYAKLIKK 429
>sp|A8GKG7|RSMB_SERP5 Ribosomal RNA small subunit methyltransferase B OS=Serratia
proteamaculans (strain 568) GN=rsmB PE=3 SV=1
Length = 429
Score = 100 bits (249), Expect = 2e-21, Method: Composition-based stats.
Identities = 46/112 (41%), Positives = 69/112 (61%), Gaps = 3/112 (2%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
+K FDRIL D PC+ +GV+RR+PDI WLRR +DI +L+ +I+ +W LK GG +++
Sbjct: 313 DKQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELAALQAEIIEAIWPHLKSGGVMVY 372
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLP---TVNKKQDYDGFFYS 132
TCS+ E+ EQ F + H D+ + + Q P + +D DGFFY+
Sbjct: 373 ATCSILPAENAEQVSAFLQRHADARLVETGNQQQPGRQNLPHPEDGDGFFYA 424
>sp|B4F1L5|RSMB_PROMH Ribosomal RNA small subunit methyltransferase B OS=Proteus
mirabilis (strain HI4320) GN=rsmB PE=3 SV=1
Length = 422
Score = 100 bits (249), Expect = 3e-21, Method: Composition-based stats.
Identities = 49/114 (42%), Positives = 73/114 (64%), Gaps = 4/114 (3%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
N FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++
Sbjct: 313 NMQFDRILLDAPCSATGVIRRHPDIKWLRRNEDIAQLAQIQKEILHAIWPYLKSGGTLVY 372
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
TCS+ EE+ +Q F + +D+ + + Q LP ++ DGFFY+L K+
Sbjct: 373 ATCSILPEENSQQIAAFLSSMQDA-QCDYQHQCLP---EQYSGDGFFYALINKK 422
>sp|Q8DDE5|RSMB_VIBVU Ribosomal RNA small subunit methyltransferase B OS=Vibrio
vulnificus (strain CMCP6) GN=rsmB PE=3 SV=1
Length = 426
Score = 100 bits (248), Expect = 3e-21, Method: Composition-based stats.
Identities = 49/126 (38%), Positives = 76/126 (60%), Gaps = 8/126 (6%)
Query: 17 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLK 76
N ++++ + FDRIL D PC+ +GV+RR+PDI WLRR DI L++ +I + +W LK
Sbjct: 303 NPEQWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRAEDITALAQLQSEIFDAMWAQLK 362
Query: 77 PGGKLLFVTCSLWFEESEEQAIIF-----SKNHKDSIRLNSPGQLLPTVNKKQDYDGFFY 131
PGG L++ TCS+ E+ EQ F + S R N Q++P ++D DGF+Y
Sbjct: 363 PGGTLVYATCSITPMENVEQVKAFLARTSAAQLVGSERENPGRQIIP---GEEDMDGFYY 419
Query: 132 SLFQKR 137
++ K+
Sbjct: 420 AVLVKQ 425
>sp|A4WF97|RSMB_ENT38 Ribosomal RNA small subunit methyltransferase B OS=Enterobacter sp.
(strain 638) GN=rsmB PE=3 SV=1
Length = 428
Score = 100 bits (248), Expect = 3e-21, Method: Composition-based stats.
Identities = 51/115 (44%), Positives = 74/115 (64%), Gaps = 9/115 (7%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
++ FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LKPGG L++
Sbjct: 312 DEQFDRILVDAPCSATGVIRRHPDIKWLRRDRDINELAQLQSEILDAVWPHLKPGGTLVY 371
Query: 84 VTCSLWFEESEEQAIIFSKNHKD-SIRL----NSPG-QLLPTVNKKQDYDGFFYS 132
TCS+ EE+ +Q F K + ++R + PG Q LP +D DGFFY+
Sbjct: 372 ATCSVLPEENSQQIAAFLKRTSNATLRTTGTPDKPGVQNLPGA---EDGDGFFYA 423
>sp|B2VK95|RSMB_ERWT9 Ribosomal RNA small subunit methyltransferase B OS=Erwinia
tasmaniensis (strain DSM 17950 / Et1/99) GN=rsmB PE=3
SV=1
Length = 429
Score = 100 bits (248), Expect = 4e-21, Method: Composition-based stats.
Identities = 51/117 (43%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L+ +IL+ +W LKPGG LL+ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAALQQQILDAVWPHLKPGGTLLYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----RLNSPG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + H D+ L PG Q+ P + DGF+Y+ K+
Sbjct: 376 SVLPEENHVQIGQFLQRHADATLIETGDLTQPGIQVFPQADGG---DGFYYAKLVKQ 429
>sp|A9MN78|RSMB_SALAR Ribosomal RNA small subunit methyltransferase B OS=Salmonella
arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
GN=rsmB PE=3 SV=1
Length = 429
Score = 99.4 bits (246), Expect = 6e-21, Method: Composition-based stats.
Identities = 51/117 (43%), Positives = 71/117 (60%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L+K +IL+ +W LKPGG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAKLQAEILDTVWPRLKPGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----RLNSPGQL-LPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PGQ LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSAQINAFLQRTPDAALSETGTPDQPGQQNLPGA---EEGDGFFYAKLIKK 429
>sp|A8AQI3|RSMB_CITK8 Ribosomal RNA small subunit methyltransferase B OS=Citrobacter
koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
GN=rsmB PE=3 SV=1
Length = 428
Score = 99.4 bits (246), Expect = 6e-21, Method: Composition-based stats.
Identities = 47/114 (41%), Positives = 69/114 (60%), Gaps = 3/114 (2%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L+K +IL+ +W LK GG L++ TC
Sbjct: 315 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAKLQSEILDAIWPHLKSGGTLVYATC 374
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNK---KQDYDGFFYSLFQKR 137
S+ EE+ +Q + F + D+ + P V ++ DGFFY+ K+
Sbjct: 375 SVLPEENSQQILAFLQRTPDATLTGTGTPAQPGVQNLPGAEEGDGFFYAKLIKK 428
>sp|B5BGV5|RSMB_SALPK Ribosomal RNA small subunit methyltransferase B OS=Salmonella
paratyphi A (strain AKU_12601) GN=rsmB PE=3 SV=1
Length = 429
Score = 99.0 bits (245), Expect = 7e-21, Method: Composition-based stats.
Identities = 48/116 (41%), Positives = 71/116 (61%), Gaps = 7/116 (6%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LKPGG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDTVWPRLKPGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----RLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ +Q F + D+ + PGQ + ++ DGFFY+ K+
Sbjct: 376 SVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQ--QNLPGGEEGDGFFYAKLIKK 429
>sp|Q5PIT6|RSMB_SALPA Ribosomal RNA small subunit methyltransferase B OS=Salmonella
paratyphi A (strain ATCC 9150 / SARB42) GN=rsmB PE=3
SV=1
Length = 429
Score = 99.0 bits (245), Expect = 7e-21, Method: Composition-based stats.
Identities = 48/116 (41%), Positives = 71/116 (61%), Gaps = 7/116 (6%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LKPGG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDTVWPRLKPGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----RLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ +Q F + D+ + PGQ + ++ DGFFY+ K+
Sbjct: 376 SVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQ--QNLPGGEEGDGFFYAKLIKK 429
>sp|B5RH47|RSMB_SALG2 Ribosomal RNA small subunit methyltransferase B OS=Salmonella
gallinarum (strain 287/91 / NCTC 13346) GN=rsmB PE=3
SV=1
Length = 429
Score = 99.0 bits (245), Expect = 8e-21, Method: Composition-based stats.
Identities = 48/116 (41%), Positives = 71/116 (61%), Gaps = 7/116 (6%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LKPGG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----RLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ +Q F + D+ + PGQ + ++ DGFFY+ K+
Sbjct: 376 SVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQ--QNLPGGEEGDGFFYAKLIKK 429
>sp|B5R1E5|RSMB_SALEP Ribosomal RNA small subunit methyltransferase B OS=Salmonella
enteritidis PT4 (strain P125109) GN=rsmB PE=3 SV=1
Length = 429
Score = 99.0 bits (245), Expect = 8e-21, Method: Composition-based stats.
Identities = 48/116 (41%), Positives = 71/116 (61%), Gaps = 7/116 (6%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LKPGG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----RLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ +Q F + D+ + PGQ + ++ DGFFY+ K+
Sbjct: 376 SVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQ--QNLPGGEEGDGFFYAKLIKK 429
>sp|P44788|RSMB_HAEIN Ribosomal RNA small subunit methyltransferase B OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=rsmB PE=3 SV=1
Length = 451
Score = 99.0 bits (245), Expect = 8e-21, Method: Composition-based stats.
Identities = 53/120 (44%), Positives = 71/120 (59%), Gaps = 12/120 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR++ DI +L + KIL+ LW+ LKP G LL+ TC
Sbjct: 333 FDRILLDAPCSATGVIRRHPDIKWLRKETDIAQLVELQKKILSALWEKLKPNGVLLYATC 392
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNSP---------GQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ EQ F H D+ L+ P Q +P N DGF+Y+ KR
Sbjct: 393 SVLPEENCEQIQAFLNAHADAELLSLPFSDDKSAVGFQFIPQPNSG---DGFYYAKLLKR 449
>sp|B4TJX9|RSMB_SALHS Ribosomal RNA small subunit methyltransferase B OS=Salmonella
heidelberg (strain SL476) GN=rsmB PE=3 SV=1
Length = 429
Score = 99.0 bits (245), Expect = 9e-21, Method: Composition-based stats.
Identities = 48/116 (41%), Positives = 71/116 (61%), Gaps = 7/116 (6%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LKPGG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----RLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ +Q F + D+ + PGQ + ++ DGFFY+ K+
Sbjct: 376 SVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQ--QNLPGGEEGDGFFYAKLIKK 429
>sp|Q8ZLM5|RSMB_SALTY Ribosomal RNA small subunit methyltransferase B OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=rsmB PE=3 SV=1
Length = 429
Score = 98.6 bits (244), Expect = 1e-20, Method: Composition-based stats.
Identities = 48/116 (41%), Positives = 71/116 (61%), Gaps = 7/116 (6%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LKPGG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----RLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ +Q F + D+ + PGQ + ++ DGFFY+ K+
Sbjct: 376 SVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQ--QNLPGGEEGDGFFYAKLIKK 429
>sp|B4TXB2|RSMB_SALSV Ribosomal RNA small subunit methyltransferase B OS=Salmonella
schwarzengrund (strain CVM19633) GN=rsmB PE=3 SV=1
Length = 429
Score = 98.6 bits (244), Expect = 1e-20, Method: Composition-based stats.
Identities = 48/116 (41%), Positives = 71/116 (61%), Gaps = 7/116 (6%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LKPGG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----RLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ +Q F + D+ + PGQ + ++ DGFFY+ K+
Sbjct: 376 SVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQ--QNLPGGEEGDGFFYAKLIKK 429
>sp|A9N8B3|RSMB_SALPB Ribosomal RNA small subunit methyltransferase B OS=Salmonella
paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rsmB PE=3
SV=1
Length = 429
Score = 98.6 bits (244), Expect = 1e-20, Method: Composition-based stats.
Identities = 48/116 (41%), Positives = 71/116 (61%), Gaps = 7/116 (6%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LKPGG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----RLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ +Q F + D+ + PGQ + ++ DGFFY+ K+
Sbjct: 376 SVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQ--QNLPGGEEGDGFFYAKLIKK 429
>sp|B4SUR0|RSMB_SALNS Ribosomal RNA small subunit methyltransferase B OS=Salmonella
newport (strain SL254) GN=rsmB PE=3 SV=1
Length = 429
Score = 98.6 bits (244), Expect = 1e-20, Method: Composition-based stats.
Identities = 48/116 (41%), Positives = 71/116 (61%), Gaps = 7/116 (6%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LKPGG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----RLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ +Q F + D+ + PGQ + ++ DGFFY+ K+
Sbjct: 376 SVLPEENRDQIKAFLQRTPDAALSETGTPDQPGQ--QNLPGGEEGDGFFYAKLIKK 429
>sp|C0PZV1|RSMB_SALPC Ribosomal RNA small subunit methyltransferase B OS=Salmonella
paratyphi C (strain RKS4594) GN=rsmB PE=3 SV=1
Length = 429
Score = 98.6 bits (244), Expect = 1e-20, Method: Composition-based stats.
Identities = 48/116 (41%), Positives = 71/116 (61%), Gaps = 7/116 (6%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LKPGG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----RLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ +Q F + D+ + PGQ + ++ DGFFY+ K+
Sbjct: 376 SVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQ--QNLPGGEEGDGFFYAKLIKK 429
>sp|Q57J62|RSMB_SALCH Ribosomal RNA small subunit methyltransferase B OS=Salmonella
choleraesuis (strain SC-B67) GN=rsmB PE=3 SV=1
Length = 429
Score = 98.6 bits (244), Expect = 1e-20, Method: Composition-based stats.
Identities = 48/116 (41%), Positives = 71/116 (61%), Gaps = 7/116 (6%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LKPGG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----RLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ +Q F + D+ + PGQ + ++ DGFFY+ K+
Sbjct: 376 SVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQ--QNLPGGEEGDGFFYAKLIKK 429
>sp|Q7VKC4|RSMB_HAEDU Ribosomal RNA small subunit methyltransferase B OS=Haemophilus
ducreyi (strain 35000HP / ATCC 700724) GN=rsmB PE=3 SV=1
Length = 435
Score = 98.6 bits (244), Expect = 1e-20, Method: Composition-based stats.
Identities = 52/118 (44%), Positives = 70/118 (59%), Gaps = 11/118 (9%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR+ DI +L + KIL+ LW LKP G L++ TC
Sbjct: 318 FDRILLDAPCSATGVIRRHPDIKWLRQAGDISELVELQAKILSALWHRLKPNGTLVYATC 377
Query: 87 SLWFEESEEQAIIFSKNHKDS--IRLNSPG------QLLPTVNKKQDYDGFFYSLFQK 136
S+ E+ EQ I F + D+ I ++ G Q LP N DGFFY+ +K
Sbjct: 378 SILPAENSEQIIQFITANPDAELIEMDFNGEKAIMKQFLPQQNGG---DGFFYAKLRK 432
>sp|Q8Z1X1|RSMB_SALTI Ribosomal RNA small subunit methyltransferase B OS=Salmonella typhi
GN=rsmB PE=3 SV=1
Length = 429
Score = 98.2 bits (243), Expect = 1e-20, Method: Composition-based stats.
Identities = 48/116 (41%), Positives = 71/116 (61%), Gaps = 7/116 (6%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LKPGG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----RLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ +Q F + D+ + PGQ + ++ DGFFY+ K+
Sbjct: 376 SVLPEENRDQIKAFLQRTPDAALSETGTPDQPGQ--QNLPGGEEGDGFFYAKLIKK 429
>sp|Q7MYI0|RSMB_PHOLL Ribosomal RNA small subunit methyltransferase B OS=Photorhabdus
luminescens subsp. laumondii (strain TT01) GN=rsmB PE=3
SV=1
Length = 429
Score = 98.2 bits (243), Expect = 1e-20, Method: Composition-based stats.
Identities = 49/121 (40%), Positives = 73/121 (60%), Gaps = 9/121 (7%)
Query: 23 KNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLL 82
+N+ FDRIL D PC+ +GV+RR+PDI WLRR+ DI +L + +IL+ +W LK G L+
Sbjct: 312 ENQQFDRILLDAPCSATGVIRRHPDIKWLRREEDIAQLVQLQSEILDAIWPYLKKSGTLV 371
Query: 83 FVTCSLWFEESEEQAIIFSKNHKDSIRLNSP------GQLLPTVNKKQDYDGFFYSLFQK 136
+ TCS+ +E+ +Q F K H D+ + Q++P +N DGFFY+ K
Sbjct: 372 YATCSILPDENCQQISSFLKRHSDAKLAGTETNDCLGKQIIPELNGG---DGFFYARLTK 428
Query: 137 R 137
R
Sbjct: 429 R 429
>sp|B1JJH6|RSMB_YERPY Ribosomal RNA small subunit methyltransferase B OS=Yersinia
pseudotuberculosis serotype O:3 (strain YPIII) GN=rsmB
PE=3 SV=1
Length = 429
Score = 98.2 bits (243), Expect = 1e-20, Method: Composition-based stats.
Identities = 49/120 (40%), Positives = 74/120 (61%), Gaps = 9/120 (7%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
++ FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +I+ +W LK GG L++
Sbjct: 313 DQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGGVLVY 372
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
TCS+ EE+++Q F + H ++ + PG Q LP +D DGFFY+ K+
Sbjct: 373 ATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLP---HPEDGDGFFYAKIIKK 429
>sp|Q664V2|RSMB_YERPS Ribosomal RNA small subunit methyltransferase B OS=Yersinia
pseudotuberculosis serotype I (strain IP32953) GN=rsmB
PE=3 SV=1
Length = 429
Score = 98.2 bits (243), Expect = 1e-20, Method: Composition-based stats.
Identities = 49/120 (40%), Positives = 74/120 (61%), Gaps = 9/120 (7%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
++ FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +I+ +W LK GG L++
Sbjct: 313 DQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGGVLVY 372
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
TCS+ EE+++Q F + H ++ + PG Q LP +D DGFFY+ K+
Sbjct: 373 ATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLP---HPEDGDGFFYAKIIKK 429
>sp|A4TH21|RSMB_YERPP Ribosomal RNA small subunit methyltransferase B OS=Yersinia pestis
(strain Pestoides F) GN=rsmB PE=3 SV=1
Length = 429
Score = 98.2 bits (243), Expect = 1e-20, Method: Composition-based stats.
Identities = 49/120 (40%), Positives = 74/120 (61%), Gaps = 9/120 (7%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
++ FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +I+ +W LK GG L++
Sbjct: 313 DQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGGVLVY 372
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
TCS+ EE+++Q F + H ++ + PG Q LP +D DGFFY+ K+
Sbjct: 373 ATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLP---HPEDGDGFFYAKIIKK 429
>sp|Q1CCX4|RSMB_YERPN Ribosomal RNA small subunit methyltransferase B OS=Yersinia pestis
bv. Antiqua (strain Nepal516) GN=rsmB PE=3 SV=1
Length = 429
Score = 98.2 bits (243), Expect = 1e-20, Method: Composition-based stats.
Identities = 49/120 (40%), Positives = 74/120 (61%), Gaps = 9/120 (7%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
++ FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +I+ +W LK GG L++
Sbjct: 313 DQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGGVLVY 372
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
TCS+ EE+++Q F + H ++ + PG Q LP +D DGFFY+ K+
Sbjct: 373 ATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLP---HPEDGDGFFYAKIIKK 429
>sp|A9R925|RSMB_YERPG Ribosomal RNA small subunit methyltransferase B OS=Yersinia pestis
bv. Antiqua (strain Angola) GN=rsmB PE=3 SV=2
Length = 429
Score = 98.2 bits (243), Expect = 1e-20, Method: Composition-based stats.
Identities = 49/120 (40%), Positives = 74/120 (61%), Gaps = 9/120 (7%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
++ FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +I+ +W LK GG L++
Sbjct: 313 DQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGGVLVY 372
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
TCS+ EE+++Q F + H ++ + PG Q LP +D DGFFY+ K+
Sbjct: 373 ATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLP---HPEDGDGFFYAKIIKK 429
>sp|Q8ZJ81|RSMB_YERPE Ribosomal RNA small subunit methyltransferase B OS=Yersinia pestis
GN=rsmB PE=3 SV=1
Length = 429
Score = 98.2 bits (243), Expect = 1e-20, Method: Composition-based stats.
Identities = 49/120 (40%), Positives = 74/120 (61%), Gaps = 9/120 (7%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
++ FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +I+ +W LK GG L++
Sbjct: 313 DQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGGVLVY 372
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
TCS+ EE+++Q F + H ++ + PG Q LP +D DGFFY+ K+
Sbjct: 373 ATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLP---HPEDGDGFFYAKIIKK 429
>sp|B2K506|RSMB_YERPB Ribosomal RNA small subunit methyltransferase B OS=Yersinia
pseudotuberculosis serotype IB (strain PB1/+) GN=rsmB
PE=3 SV=1
Length = 429
Score = 98.2 bits (243), Expect = 1e-20, Method: Composition-based stats.
Identities = 49/120 (40%), Positives = 74/120 (61%), Gaps = 9/120 (7%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
++ FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +I+ +W LK GG L++
Sbjct: 313 DQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGGVLVY 372
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
TCS+ EE+++Q F + H ++ + PG Q LP +D DGFFY+ K+
Sbjct: 373 ATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLP---HPEDGDGFFYAKIIKK 429
>sp|Q1C2X7|RSMB_YERPA Ribosomal RNA small subunit methyltransferase B OS=Yersinia pestis
bv. Antiqua (strain Antiqua) GN=rsmB PE=3 SV=1
Length = 429
Score = 98.2 bits (243), Expect = 1e-20, Method: Composition-based stats.
Identities = 49/120 (40%), Positives = 74/120 (61%), Gaps = 9/120 (7%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
++ FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +I+ +W LK GG L++
Sbjct: 313 DQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGGVLVY 372
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
TCS+ EE+++Q F + H ++ + PG Q LP +D DGFFY+ K+
Sbjct: 373 ATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLP---HPEDGDGFFYAKIIKK 429
>sp|A7FNK4|RSMB_YERP3 Ribosomal RNA small subunit methyltransferase B OS=Yersinia
pseudotuberculosis serotype O:1b (strain IP 31758)
GN=rsmB PE=3 SV=1
Length = 429
Score = 98.2 bits (243), Expect = 1e-20, Method: Composition-based stats.
Identities = 49/120 (40%), Positives = 74/120 (61%), Gaps = 9/120 (7%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
++ FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +I+ +W LK GG L++
Sbjct: 313 DQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGGVLVY 372
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
TCS+ EE+++Q F + H ++ + PG Q LP +D DGFFY+ K+
Sbjct: 373 ATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLP---HPEDGDGFFYAKIIKK 429
>sp|B5FJI4|RSMB_SALDC Ribosomal RNA small subunit methyltransferase B OS=Salmonella
dublin (strain CT_02021853) GN=rsmB PE=3 SV=1
Length = 429
Score = 97.8 bits (242), Expect = 2e-20, Method: Composition-based stats.
Identities = 48/116 (41%), Positives = 71/116 (61%), Gaps = 7/116 (6%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LKPGG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIVELAQLQAEILDAVWPRLKPGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----RLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ +Q F + D+ + PGQ + ++ DGFFY+ K+
Sbjct: 376 SVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQ--QNLPGGEEGDGFFYAKLIKK 429
>sp|Q6D000|RSMB_ERWCT Ribosomal RNA small subunit methyltransferase B OS=Erwinia
carotovora subsp. atroseptica (strain SCRI 1043 / ATCC
BAA-672) GN=rsmB PE=3 SV=1
Length = 429
Score = 97.8 bits (242), Expect = 2e-20, Method: Composition-based stats.
Identities = 48/118 (40%), Positives = 72/118 (61%), Gaps = 9/118 (7%)
Query: 25 KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 84
+ FDRIL D PC+ +GV+RR+PDI WLRR DI++L +IL+ +W LK GG +++
Sbjct: 314 RVFDRILLDAPCSATGVIRRHPDIKWLRRDRDIEELVALQKEILDAIWPHLKTGGTMVYA 373
Query: 85 TCSLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQK 136
TCS+ +E+ +Q F H D+ +++ PG Q+LP + DGFFY+ K
Sbjct: 374 TCSILPQENTQQVTGFLSRHADAALVDTGTSEIPGIQILPHADSG---DGFFYAKLVK 428
>sp|Q2NQQ2|RSMB_SODGM Ribosomal RNA small subunit methyltransferase B OS=Sodalis
glossinidius (strain morsitans) GN=rsmB PE=3 SV=1
Length = 433
Score = 97.1 bits (240), Expect = 3e-20, Method: Composition-based stats.
Identities = 51/119 (42%), Positives = 70/119 (58%), Gaps = 9/119 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL W++LK GG LL+ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDGDIAELAELQRQILCAAWRVLKLGGTLLYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKRKE 139
S+ EE+ Q F +H D++ + PG Q LP DGFFY+ K +
Sbjct: 376 SILPEENRGQIAAFLADHPDALLQETGDAAAPGLQCLPVPTSG---DGFFYAKMIKETQ 431
>sp|A1JRZ3|RSMB_YERE8 Ribosomal RNA small subunit methyltransferase B OS=Yersinia
enterocolitica serotype O:8 / biotype 1B (strain 8081)
GN=rsmB PE=3 SV=1
Length = 429
Score = 97.1 bits (240), Expect = 3e-20, Method: Composition-based stats.
Identities = 46/120 (38%), Positives = 74/120 (61%), Gaps = 9/120 (7%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
++ FDRIL D PC+ +GV+RR+PDI WLRR +DI +L++ +I+ +W LK GG +++
Sbjct: 313 DQQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELAQLQSEIIEAIWPKLKKGGVMVY 372
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSIRLNSPG------QLLPTVNKKQDYDGFFYSLFQKR 137
TCS+ EE+++Q F + H ++ + + Q LP +D DGF+Y+ KR
Sbjct: 373 ATCSILPEENQQQIATFLQRHSEADLVETGTVSALGRQNLP---HPEDGDGFYYAKLIKR 429
>sp|B5F7R5|RSMB_SALA4 Ribosomal RNA small subunit methyltransferase B OS=Salmonella agona
(strain SL483) GN=rsmB PE=3 SV=1
Length = 429
Score = 96.3 bits (238), Expect = 4e-20, Method: Composition-based stats.
Identities = 47/116 (40%), Positives = 70/116 (60%), Gaps = 7/116 (6%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W L PGG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPRLNPGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSI-----RLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ +Q F + D+ + PGQ + ++ DGFFY+ K+
Sbjct: 376 SVLPEENRDQIKAFLQRTPDAALSETGTPDQPGQ--QNLPGGEEGDGFFYAKLIKK 429
>sp|Q8EKR0|RSMB_SHEON Ribosomal RNA small subunit methyltransferase B OS=Shewanella
oneidensis (strain MR-1) GN=rsmB PE=3 SV=1
Length = 428
Score = 96.3 bits (238), Expect = 5e-20, Method: Composition-based stats.
Identities = 46/123 (37%), Positives = 78/123 (63%), Gaps = 8/123 (6%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+++ + FDRIL D PC+ +GV+RR+PDI WLR+ +DI++L++ +IL++ WK LKPGG
Sbjct: 304 WWQGEQFDRILLDAPCSATGVIRRHPDIKWLRKNHDIEELAELQRQILDHCWKWLKPGGT 363
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVN-------KKQDYDGFFYSL 133
LL+ TCS+ +E+ +Q F D+ +L++ Q + + + + DGF+Y+
Sbjct: 364 LLYATCSILPQENRDQISAFLARTADA-KLDTLVQQASSQDIGWQITPGQHNMDGFYYAR 422
Query: 134 FQK 136
K
Sbjct: 423 LLK 425
>sp|C6DFR7|RSMB_PECCP Ribosomal RNA small subunit methyltransferase B OS=Pectobacterium
carotovorum subsp. carotovorum (strain PC1) GN=rsmB PE=3
SV=1
Length = 429
Score = 95.9 bits (237), Expect = 6e-20, Method: Composition-based stats.
Identities = 47/120 (39%), Positives = 72/120 (60%), Gaps = 9/120 (7%)
Query: 23 KNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLL 82
+ + FDRIL D PC+ +GV+RR+PDI WLRR DI++L +I + +W LK GG ++
Sbjct: 312 EGRMFDRILLDAPCSATGVIRRHPDIKWLRRDRDIEELVALQKEIFDAIWPHLKVGGTMV 371
Query: 83 FVTCSLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQK 136
+ TCS+ +E+ +Q F H D+ +++ PG Q+LP + DGFFY+ K
Sbjct: 372 YATCSILPQENAQQVTDFLTRHADATLVDTGTRELPGIQMLPHADGG---DGFFYAKLVK 428
>sp|Q1R644|RSMB_ECOUT Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
(strain UTI89 / UPEC) GN=rsmB PE=3 SV=1
Length = 429
Score = 92.8 bits (229), Expect = 5e-19, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWSHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SMLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>sp|A1AGI0|RSMB_ECOK1 Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O1:K1 / APEC GN=rsmB PE=3 SV=1
Length = 429
Score = 92.8 bits (229), Expect = 5e-19, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWSHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SMLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>sp|B7MCQ4|RSMB_ECO45 Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O45:K1 (strain S88 / ExPEC) GN=rsmB PE=3 SV=1
Length = 429
Score = 92.8 bits (229), Expect = 5e-19, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWSHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SMLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>sp|B7NDR0|RSMB_ECOLU Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O17:K52:H18 (strain UMN026 / ExPEC) GN=rsmB PE=3 SV=1
Length = 429
Score = 92.8 bits (229), Expect = 6e-19, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLIYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
>sp|Q9CKP7|RSMB_PASMU Ribosomal RNA small subunit methyltransferase B OS=Pasteurella
multocida (strain Pm70) GN=rsmB PE=3 SV=1
Length = 446
Score = 92.4 bits (228), Expect = 6e-19, Method: Composition-based stats.
Identities = 50/119 (42%), Positives = 68/119 (57%), Gaps = 12/119 (10%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLR+ +DI L +IL LW +LKP G LL+ TC
Sbjct: 328 FDRILLDAPCSATGVIRRHPDIKWLRQASDISALVALQKQILQALWTVLKPNGILLYATC 387
Query: 87 SLWFEESEEQAIIFSKNHKD---------SIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136
S+ EE+ Q F N+ D ++ + Q LPT N DGF+Y+ +K
Sbjct: 388 SVLPEENALQIEQFLTNNVDAKLEPLPFTAVEGSVGYQFLPTENGG---DGFYYAKLRK 443
>sp|Q0TCH3|RSMB_ECOL5 Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O6:K15:H31 (strain 536 / UPEC) GN=rsmB PE=3 SV=1
Length = 429
Score = 92.4 bits (228), Expect = 7e-19, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86
FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG L++ TC
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWSHLKSGGTLVYATC 375
Query: 87 SLWFEESEEQAIIFSKNHKDSIRLNS-----PG-QLLPTVNKKQDYDGFFYSLFQKR 137
S+ EE+ Q F + D+ + PG Q LP ++ DGFFY+ K+
Sbjct: 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIKK 429
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.138 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,932,599
Number of Sequences: 539616
Number of extensions: 2260945
Number of successful extensions: 5344
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 5047
Number of HSP's gapped (non-prelim): 217
length of query: 139
length of database: 191,569,459
effective HSP length: 104
effective length of query: 35
effective length of database: 135,449,395
effective search space: 4740728825
effective search space used: 4740728825
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)