Query psy15213
Match_columns 139
No_of_seqs 167 out of 1173
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 23:35:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15213.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15213hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0144 Sun tRNA and rRNA cyto 100.0 6.6E-41 1.4E-45 280.1 13.7 125 11-138 213-355 (355)
2 PRK11933 yebU rRNA (cytosine-C 100.0 1.2E-38 2.7E-43 274.8 11.3 111 25-138 182-308 (470)
3 PF01189 Nol1_Nop2_Fmu: NOL1/N 100.0 5.8E-39 1.3E-43 261.2 5.7 120 13-135 143-283 (283)
4 TIGR00446 nop2p NOL1/NOP2/sun 100.0 2.2E-35 4.7E-40 237.3 12.0 109 25-136 139-264 (264)
5 KOG1122|consensus 100.0 6.2E-36 1.3E-40 252.8 6.0 110 26-138 312-442 (460)
6 PRK14901 16S rRNA methyltransf 100.0 8.8E-35 1.9E-39 247.9 12.8 111 25-138 324-434 (434)
7 TIGR00563 rsmB ribosomal RNA s 100.0 6.9E-34 1.5E-38 241.7 13.5 114 21-137 304-426 (426)
8 PRK14903 16S rRNA methyltransf 100.0 4.4E-33 9.6E-38 237.8 12.2 111 24-138 305-431 (431)
9 PRK14904 16S rRNA methyltransf 100.0 1.3E-32 2.9E-37 235.1 13.4 119 17-138 309-444 (445)
10 PRK10901 16S rRNA methyltransf 100.0 2.1E-31 4.6E-36 226.7 14.1 121 14-137 301-427 (427)
11 PRK14902 16S rRNA methyltransf 100.0 8.3E-31 1.8E-35 223.7 13.1 111 25-138 319-444 (444)
12 KOG2198|consensus 99.9 1.8E-26 3.8E-31 193.0 7.6 85 23-107 233-318 (375)
13 KOG2360|consensus 99.7 1.1E-17 2.4E-22 140.9 8.0 109 25-137 283-413 (413)
14 COG1092 Predicted SAM-dependen 99.1 3.4E-10 7.3E-15 96.5 7.0 79 3-94 262-345 (393)
15 PF10672 Methyltrans_SAM: S-ad 98.7 6.1E-09 1.3E-13 85.6 3.3 76 3-94 168-247 (286)
16 PRK15128 23S rRNA m(5)C1962 me 98.6 8.2E-08 1.8E-12 81.9 7.6 87 4-103 266-359 (396)
17 PRK11783 rlmL 23S rRNA m(2)G24 98.1 4.4E-06 9.5E-11 75.8 6.5 79 4-93 584-664 (702)
18 TIGR03704 PrmC_rel_meth putati 97.9 2.7E-05 5.8E-10 62.5 6.0 76 25-104 152-231 (251)
19 PF13659 Methyltransf_26: Meth 97.6 1.9E-05 4.2E-10 54.7 0.6 51 23-87 67-117 (117)
20 TIGR03533 L3_gln_methyl protei 97.5 0.00069 1.5E-08 55.3 9.2 92 23-131 186-281 (284)
21 PRK14967 putative methyltransf 97.5 0.00054 1.2E-08 53.5 7.5 64 21-88 96-162 (223)
22 TIGR01177 conserved hypothetic 97.3 0.00055 1.2E-08 56.6 6.1 53 24-89 246-298 (329)
23 TIGR00537 hemK_rel_arch HemK-r 97.3 0.00084 1.8E-08 50.5 6.2 75 25-104 81-156 (179)
24 TIGR03534 RF_mod_PrmC protein- 96.9 0.0054 1.2E-07 47.7 7.5 78 22-104 150-232 (251)
25 PRK09328 N5-glutamine S-adenos 96.8 0.004 8.8E-08 49.3 6.7 76 25-104 174-253 (275)
26 PRK11805 N5-glutamine S-adenos 96.6 0.0048 1.1E-07 51.0 6.0 58 23-84 198-262 (307)
27 PF12847 Methyltransf_18: Meth 96.4 0.0065 1.4E-07 41.4 4.6 54 15-86 58-112 (112)
28 TIGR00417 speE spermidine synt 96.4 0.017 3.7E-07 46.6 7.7 57 24-100 143-199 (270)
29 TIGR00438 rrmJ cell division p 96.4 0.029 6.4E-07 42.4 8.5 65 23-100 95-159 (188)
30 COG1041 Predicted DNA modifica 96.0 0.011 2.4E-07 50.0 4.9 51 23-86 261-311 (347)
31 PRK00811 spermidine synthase; 96.0 0.031 6.7E-07 45.6 7.1 68 15-102 137-206 (283)
32 KOG2671|consensus 95.9 0.0075 1.6E-07 51.5 3.5 89 18-110 276-375 (421)
33 PF05175 MTS: Methyltransferas 95.9 0.0072 1.6E-07 45.3 3.0 50 21-87 93-142 (170)
34 TIGR00536 hemK_fam HemK family 95.8 0.034 7.4E-07 45.0 6.7 63 25-87 181-246 (284)
35 PF10354 DUF2431: Domain of un 95.7 0.17 3.6E-06 38.4 9.8 96 14-120 61-161 (166)
36 PRK14968 putative methyltransf 95.5 0.023 5E-07 42.1 4.4 77 24-104 88-164 (188)
37 cd02440 AdoMet_MTases S-adenos 95.4 0.034 7.3E-07 35.4 4.4 40 24-84 64-103 (107)
38 PRK11188 rrmJ 23S rRNA methylt 95.4 0.23 5E-06 38.6 9.7 88 24-133 115-205 (209)
39 PRK01581 speE spermidine synth 95.1 0.04 8.6E-07 47.2 5.1 60 24-102 224-283 (374)
40 PRK09489 rsmC 16S ribosomal RN 95.0 0.037 7.9E-07 46.5 4.5 52 24-92 259-310 (342)
41 PF10237 N6-adenineMlase: Prob 95.0 0.061 1.3E-06 40.9 5.3 52 24-101 84-135 (162)
42 PRK11524 putative methyltransf 95.0 0.064 1.4E-06 43.5 5.8 60 22-88 23-82 (284)
43 PRK13168 rumA 23S rRNA m(5)U19 94.9 0.06 1.3E-06 46.4 5.7 65 25-120 366-431 (443)
44 PF02384 N6_Mtase: N-6 DNA Met 94.7 0.03 6.4E-07 45.5 3.2 106 24-137 123-233 (311)
45 PF05958 tRNA_U5-meth_tr: tRNA 94.5 0.087 1.9E-06 44.3 5.5 49 79-137 303-352 (352)
46 PF01728 FtsJ: FtsJ-like methy 94.5 0.11 2.3E-06 38.9 5.5 70 25-109 90-161 (181)
47 PLN02366 spermidine synthase 94.4 0.22 4.7E-06 41.4 7.6 55 11-83 147-204 (308)
48 TIGR00479 rumA 23S rRNA (uraci 94.3 0.12 2.7E-06 44.1 6.1 66 25-120 361-427 (431)
49 PRK00377 cbiT cobalt-precorrin 93.8 0.15 3.3E-06 38.9 5.3 69 65-136 125-197 (198)
50 PRK03522 rumB 23S rRNA methylu 93.8 0.1 2.2E-06 42.9 4.6 64 25-120 239-303 (315)
51 COG4123 Predicted O-methyltran 93.7 0.15 3.2E-06 41.5 5.2 76 16-104 102-185 (248)
52 PRK03612 spermidine synthase; 93.4 0.14 3.1E-06 45.2 5.0 57 16-89 361-419 (521)
53 PRK00121 trmB tRNA (guanine-N( 93.3 0.15 3.2E-06 39.3 4.5 35 63-103 134-168 (202)
54 PRK04266 fibrillarin; Provisio 93.0 0.86 1.9E-05 36.1 8.5 65 65-137 156-226 (226)
55 TIGR00091 tRNA (guanine-N(7)-) 92.7 0.34 7.4E-06 36.9 5.7 68 23-110 84-154 (194)
56 PLN02476 O-methyltransferase 92.7 0.23 5E-06 40.9 4.9 40 25-89 193-232 (278)
57 PF01170 UPF0020: Putative RNA 92.4 0.54 1.2E-05 35.7 6.4 49 23-87 103-151 (179)
58 PLN02823 spermine synthase 92.3 0.54 1.2E-05 39.6 6.8 78 16-109 164-248 (336)
59 TIGR02085 meth_trns_rumB 23S r 92.3 0.57 1.2E-05 39.6 7.0 39 75-120 324-363 (374)
60 PHA03411 putative methyltransf 92.0 0.37 8E-06 39.8 5.3 79 17-109 117-209 (279)
61 PLN02781 Probable caffeoyl-CoA 91.8 0.43 9.2E-06 37.8 5.4 39 25-88 143-181 (234)
62 PRK14966 unknown domain/N5-glu 91.7 0.69 1.5E-05 40.3 7.0 75 25-104 318-396 (423)
63 PRK15001 SAM-dependent 23S rib 90.9 0.46 1E-05 40.6 5.0 50 24-90 296-345 (378)
64 PRK01544 bifunctional N5-gluta 90.6 1.3 2.8E-05 39.1 7.7 75 24-103 204-283 (506)
65 COG2519 GCD14 tRNA(1-methylade 90.5 0.54 1.2E-05 38.4 4.9 45 16-87 153-198 (256)
66 TIGR02469 CbiT precorrin-6Y C5 90.5 0.63 1.4E-05 31.6 4.6 21 65-85 102-122 (124)
67 PF01555 N6_N4_Mtase: DNA meth 90.4 0.35 7.7E-06 36.3 3.6 72 27-103 1-72 (231)
68 COG2813 RsmC 16S RNA G1207 met 90.3 0.31 6.6E-06 40.7 3.3 50 25-91 223-272 (300)
69 TIGR00080 pimt protein-L-isoas 89.9 0.5 1.1E-05 36.5 4.0 34 24-85 144-177 (215)
70 COG2265 TrmA SAM-dependent met 89.8 0.5 1.1E-05 41.1 4.4 19 21-39 357-375 (432)
71 PRK04338 N(2),N(2)-dimethylgua 89.6 0.43 9.2E-06 40.8 3.7 37 24-87 123-159 (382)
72 COG2521 Predicted archaeal met 89.5 0.57 1.2E-05 38.4 4.2 45 22-85 201-245 (287)
73 PF05401 NodS: Nodulation prot 89.3 0.46 1E-05 37.5 3.5 99 11-137 91-197 (201)
74 PRK13699 putative methylase; P 88.7 0.65 1.4E-05 36.8 4.0 68 14-89 8-75 (227)
75 TIGR00138 gidB 16S rRNA methyl 88.4 2.5 5.5E-05 32.1 7.0 50 66-119 123-174 (181)
76 COG4122 Predicted O-methyltran 88.4 0.65 1.4E-05 37.0 3.8 41 24-89 130-170 (219)
77 PRK04457 spermidine synthase; 88.1 2.2 4.7E-05 34.4 6.8 62 25-105 135-196 (262)
78 PRK00312 pcm protein-L-isoaspa 87.7 0.96 2.1E-05 34.6 4.3 38 21-86 139-176 (212)
79 PRK05031 tRNA (uracil-5-)-meth 87.7 0.67 1.4E-05 39.1 3.7 37 79-120 313-350 (362)
80 PF01596 Methyltransf_3: O-met 87.4 0.4 8.6E-06 37.6 2.0 73 25-133 120-203 (205)
81 PF01564 Spermine_synth: Sperm 87.4 0.96 2.1E-05 36.2 4.3 72 11-102 132-206 (246)
82 PF05430 Methyltransf_30: S-ad 87.4 0.41 8.8E-06 34.8 1.9 60 25-111 49-108 (124)
83 TIGR00406 prmA ribosomal prote 86.8 1.7 3.7E-05 35.3 5.5 37 65-104 239-275 (288)
84 PRK00517 prmA ribosomal protei 86.4 3.5 7.5E-05 32.6 7.0 42 64-109 192-233 (250)
85 PF03602 Cons_hypoth95: Conser 86.4 0.78 1.7E-05 35.2 3.1 12 24-35 112-123 (183)
86 PTZ00146 fibrillarin; Provisio 85.3 3.2 7E-05 34.5 6.4 35 25-84 201-236 (293)
87 PRK08317 hypothetical protein; 85.2 2.2 4.7E-05 32.2 5.0 23 65-87 104-126 (241)
88 PF08704 GCD14: tRNA methyltra 85.0 0.51 1.1E-05 38.1 1.6 35 25-86 112-148 (247)
89 KOG1663|consensus 85.0 1.7 3.7E-05 35.1 4.5 38 23-85 146-183 (237)
90 PRK08287 cobalt-precorrin-6Y C 84.8 1.3 2.8E-05 33.3 3.6 36 66-104 112-147 (187)
91 PRK01683 trans-aconitate 2-met 84.6 4.4 9.5E-05 31.7 6.7 47 17-85 84-130 (258)
92 PLN02589 caffeoyl-CoA O-methyl 84.6 1.9 4E-05 34.8 4.6 37 25-86 155-191 (247)
93 TIGR02143 trmA_only tRNA (urac 84.3 1.3 2.7E-05 37.3 3.7 37 79-120 304-341 (353)
94 PRK14121 tRNA (guanine-N(7)-)- 84.3 1.8 3.9E-05 37.4 4.6 54 22-91 188-241 (390)
95 TIGR00308 TRM1 tRNA(guanine-26 83.8 1.8 4E-05 36.9 4.5 38 25-89 113-150 (374)
96 PF13847 Methyltransf_31: Meth 83.8 0.63 1.4E-05 33.7 1.5 41 25-87 72-112 (152)
97 PRK14103 trans-aconitate 2-met 83.3 1.9 4.2E-05 34.0 4.2 46 17-84 80-125 (255)
98 PRK00536 speE spermidine synth 83.2 2.8 6.1E-05 34.2 5.2 32 69-102 155-186 (262)
99 COG2227 UbiG 2-polyprenyl-3-me 82.6 1.3 2.7E-05 36.1 2.9 22 66-87 142-163 (243)
100 COG0742 N6-adenine-specific me 82.3 2 4.3E-05 33.6 3.8 10 26-35 114-123 (187)
101 PF05063 MT-A70: MT-A70 ; Int 82.0 2.8 6.1E-05 31.6 4.5 57 27-92 1-60 (176)
102 PF01861 DUF43: Protein of unk 81.9 3.1 6.7E-05 33.8 4.9 57 25-104 111-169 (243)
103 PF01234 NNMT_PNMT_TEMT: NNMT/ 81.2 4.6 9.9E-05 32.9 5.7 69 62-136 176-256 (256)
104 PHA03412 putative methyltransf 80.5 4.3 9.4E-05 32.9 5.3 56 24-89 112-175 (241)
105 COG2263 Predicted RNA methylas 80.5 12 0.00026 29.5 7.5 85 25-137 107-197 (198)
106 PF13578 Methyltransf_24: Meth 80.4 2.1 4.5E-05 29.0 3.0 37 24-83 67-103 (106)
107 PF08241 Methyltransf_11: Meth 80.1 1.1 2.4E-05 28.7 1.4 22 62-83 74-95 (95)
108 PLN03075 nicotianamine synthas 80.0 3.8 8.3E-05 34.1 5.0 41 24-85 193-233 (296)
109 PRK01747 mnmC bifunctional tRN 79.7 1.9 4.2E-05 38.9 3.4 56 25-109 165-222 (662)
110 PF02475 Met_10: Met-10+ like- 79.0 1.3 2.8E-05 34.7 1.8 43 15-83 158-200 (200)
111 KOG1540|consensus 78.9 1.6 3.5E-05 36.1 2.3 43 66-112 195-237 (296)
112 KOG1596|consensus 78.6 6.8 0.00015 32.4 5.8 39 67-105 243-284 (317)
113 KOG1562|consensus 78.4 3 6.5E-05 35.2 3.8 77 4-104 170-249 (337)
114 TIGR00477 tehB tellurite resis 78.2 6 0.00013 30.1 5.3 20 65-84 113-132 (195)
115 PRK10909 rsmD 16S rRNA m(2)G96 78.1 4.2 9.2E-05 31.6 4.4 11 25-35 120-130 (199)
116 COG0220 Predicted S-adenosylme 76.6 3.1 6.7E-05 33.2 3.3 68 12-99 104-172 (227)
117 PF07669 Eco57I: Eco57I restri 75.3 5.2 0.00011 27.8 3.9 85 26-120 2-91 (106)
118 COG0286 HsdM Type I restrictio 75.0 16 0.00035 32.2 7.6 97 1-103 234-346 (489)
119 PRK07402 precorrin-6B methylas 74.9 3.2 7E-05 31.4 2.9 24 65-88 122-145 (196)
120 TIGR02752 MenG_heptapren 2-hep 74.4 6 0.00013 30.3 4.4 20 66-85 132-151 (231)
121 PRK13942 protein-L-isoaspartat 74.2 4.2 9E-05 31.5 3.4 13 72-84 163-175 (212)
122 PRK11036 putative S-adenosyl-L 72.1 6 0.00013 31.2 4.0 21 65-85 129-149 (255)
123 TIGR00497 hsdM type I restrict 71.7 34 0.00074 30.0 8.9 110 23-137 290-405 (501)
124 COG0421 SpeE Spermidine syntha 71.5 25 0.00054 28.9 7.6 56 14-87 135-192 (282)
125 PF14542 Acetyltransf_CG: GCN5 71.5 1.5 3.2E-05 29.1 0.3 51 27-107 25-75 (78)
126 PRK13944 protein-L-isoaspartat 71.0 7.3 0.00016 29.8 4.2 14 71-84 159-172 (205)
127 PRK11207 tellurite resistance 68.1 16 0.00034 27.8 5.4 21 64-84 113-133 (197)
128 PF06962 rRNA_methylase: Putat 67.8 4.6 0.0001 30.1 2.3 39 65-104 72-113 (140)
129 KOG2899|consensus 67.8 8.2 0.00018 31.9 3.9 57 21-96 161-220 (288)
130 TIGR02987 met_A_Alw26 type II 66.8 14 0.0003 32.5 5.5 53 68-120 179-235 (524)
131 PF08242 Methyltransf_12: Meth 66.8 4.6 9.9E-05 26.7 1.9 17 65-81 83-99 (99)
132 PF13489 Methyltransf_23: Meth 65.7 4.2 9E-05 28.7 1.7 23 65-87 95-117 (161)
133 PRK10634 tRNA(ANN) t(6)A37 thr 65.3 10 0.00022 29.2 3.9 39 64-102 6-48 (190)
134 KOG1709|consensus 65.2 12 0.00025 30.6 4.3 21 65-85 186-206 (271)
135 COG4555 NatA ABC-type Na+ tran 64.9 8.5 0.00018 31.1 3.4 60 26-107 151-210 (245)
136 COG0009 SUA5 Putative translat 64.2 11 0.00024 29.8 4.0 38 65-102 13-54 (211)
137 COG2242 CobL Precorrin-6B meth 64.0 6.4 0.00014 30.8 2.5 40 64-106 114-153 (187)
138 PRK10258 biotin biosynthesis p 63.6 7.5 0.00016 30.3 2.9 21 65-85 120-140 (251)
139 PF14314 Methyltrans_Mon: Viru 63.3 23 0.0005 32.8 6.3 70 24-111 413-483 (675)
140 PLN02336 phosphoethanolamine N 63.3 12 0.00026 32.2 4.3 25 65-89 122-146 (475)
141 PRK11630 hypothetical protein; 62.9 10 0.00022 29.6 3.5 37 66-102 15-55 (206)
142 PRK15451 tRNA cmo(5)U34 methyl 62.3 16 0.00035 28.7 4.6 23 64-86 143-165 (247)
143 KOG1271|consensus 61.0 11 0.00024 30.0 3.3 28 68-95 164-191 (227)
144 COG0116 Predicted N6-adenine-s 60.7 23 0.00049 30.7 5.5 62 11-86 283-345 (381)
145 KOG1099|consensus 59.6 26 0.00057 28.8 5.4 47 21-82 110-160 (294)
146 COG4262 Predicted spermidine s 58.1 17 0.00037 31.9 4.3 52 15-83 352-405 (508)
147 PRK11873 arsM arsenite S-adeno 58.0 10 0.00022 30.0 2.8 21 65-85 163-183 (272)
148 PRK12335 tellurite resistance 57.3 26 0.00056 28.2 5.1 20 64-83 202-221 (287)
149 PF08351 DUF1726: Domain of un 57.2 17 0.00037 24.9 3.4 42 24-90 9-50 (92)
150 PTZ00098 phosphoethanolamine N 57.0 12 0.00026 29.9 3.1 23 63-85 134-156 (263)
151 COG2890 HemK Methylase of poly 56.7 36 0.00077 27.7 5.8 80 20-104 168-254 (280)
152 TIGR00452 methyltransferase, p 56.5 11 0.00024 31.4 2.9 26 66-91 206-231 (314)
153 TIGR00095 RNA methyltransferas 56.5 23 0.0005 27.0 4.4 10 26-35 121-130 (189)
154 cd03067 PDI_b_PDIR_N PDIb fami 55.4 18 0.00038 26.0 3.3 29 59-87 31-59 (112)
155 PF12147 Methyltransf_20: Puta 55.1 25 0.00053 29.6 4.6 40 65-106 229-268 (311)
156 COG0293 FtsJ 23S rRNA methylas 54.9 1.1E+02 0.0023 24.3 8.7 95 24-137 109-203 (205)
157 PRK00107 gidB 16S rRNA methylt 54.7 13 0.00029 28.4 2.9 36 65-104 125-160 (187)
158 TIGR02716 C20_methyl_CrtF C-20 54.2 16 0.00034 29.6 3.4 29 65-93 234-262 (306)
159 PF03848 TehB: Tellurite resis 54.0 22 0.00047 27.7 3.9 55 11-85 79-133 (192)
160 PF01739 CheR: CheR methyltran 53.6 11 0.00023 29.3 2.2 26 61-86 151-176 (196)
161 smart00828 PKS_MT Methyltransf 53.4 16 0.00034 27.8 3.1 23 64-86 83-105 (224)
162 TIGR01934 MenG_MenH_UbiE ubiqu 52.9 28 0.00061 25.9 4.4 23 66-88 124-146 (223)
163 COG0275 Predicted S-adenosylme 52.6 14 0.00031 31.1 2.9 39 65-106 224-262 (314)
164 PF01795 Methyltransf_5: MraW 51.8 11 0.00024 31.5 2.2 38 65-105 221-258 (310)
165 PLN02244 tocopherol O-methyltr 51.8 15 0.00033 30.5 3.0 23 65-87 203-225 (340)
166 smart00138 MeTrc Methyltransfe 51.2 20 0.00043 28.8 3.5 25 62-86 219-243 (264)
167 KOG1270|consensus 51.1 14 0.00029 30.7 2.5 28 57-85 168-195 (282)
168 PLN02233 ubiquinone biosynthes 50.8 18 0.00039 28.8 3.2 23 65-87 162-184 (261)
169 TIGR03840 TMPT_Se_Te thiopurin 50.8 21 0.00046 27.8 3.5 24 65-88 132-155 (213)
170 TIGR00057 Sua5/YciO/YrdC/YwlC 50.4 23 0.0005 27.3 3.6 37 66-102 9-49 (201)
171 PRK10611 chemotaxis methyltran 49.8 21 0.00045 29.5 3.4 24 62-85 239-262 (287)
172 PLN02232 ubiquinone biosynthes 49.7 21 0.00046 26.2 3.2 23 65-87 61-83 (160)
173 COG0677 WecC UDP-N-acetyl-D-ma 48.6 92 0.002 27.5 7.2 77 26-120 84-168 (436)
174 COG2961 ComJ Protein involved 48.6 99 0.0021 25.7 7.1 59 24-106 154-212 (279)
175 TIGR00006 S-adenosyl-methyltra 48.6 20 0.00043 30.0 3.2 36 65-103 220-255 (305)
176 KOG3350|consensus 48.6 4.1 8.8E-05 32.2 -0.9 24 10-35 121-144 (217)
177 PF11899 DUF3419: Protein of u 48.5 30 0.00064 29.7 4.3 47 24-91 293-340 (380)
178 TIGR01983 UbiG ubiquinone bios 47.7 22 0.00049 26.8 3.2 23 65-87 129-151 (224)
179 PRK00050 16S rRNA m(4)C1402 me 47.6 19 0.0004 29.9 2.8 36 65-103 216-251 (296)
180 COG4976 Predicted methyltransf 47.6 1.3E+02 0.0028 24.9 7.5 77 55-135 195-286 (287)
181 COG1352 CheR Methylase of chem 47.5 21 0.00045 29.3 3.1 24 61-84 217-240 (268)
182 PRK06922 hypothetical protein; 47.4 38 0.00082 31.5 5.0 24 63-86 515-538 (677)
183 KOG3115|consensus 47.1 28 0.00061 28.2 3.6 73 63-138 161-245 (249)
184 PF06859 Bin3: Bicoid-interact 47.1 20 0.00043 25.7 2.6 29 55-83 14-42 (110)
185 PRK15068 tRNA mo(5)U34 methylt 46.7 20 0.00043 29.7 2.9 22 65-86 206-227 (322)
186 TIGR00740 methyltransferase, p 45.8 22 0.00049 27.5 2.9 22 64-85 140-161 (239)
187 PF01135 PCMT: Protein-L-isoas 45.4 8 0.00017 30.3 0.3 17 20-36 135-151 (209)
188 PLN02336 phosphoethanolamine N 45.1 38 0.00083 29.1 4.5 24 65-88 349-372 (475)
189 PRK00216 ubiE ubiquinone/menaq 45.0 23 0.0005 26.7 2.8 24 65-88 138-161 (239)
190 PF13709 DUF4159: Domain of un 44.9 38 0.00082 26.4 4.1 52 59-113 66-118 (207)
191 CHL00076 chlB photochlorophyll 44.2 25 0.00055 31.2 3.3 29 61-89 70-98 (513)
192 TIGR02072 BioC biotin biosynth 43.7 25 0.00055 26.4 2.9 21 65-85 115-135 (240)
193 COG2518 Pcm Protein-L-isoaspar 43.5 19 0.00041 28.6 2.1 21 15-35 126-147 (209)
194 PLN02396 hexaprenyldihydroxybe 43.4 24 0.00052 29.5 2.9 21 65-85 215-235 (322)
195 PF01269 Fibrillarin: Fibrilla 43.2 34 0.00074 27.6 3.6 95 12-136 128-229 (229)
196 KOG4300|consensus 42.9 26 0.00055 28.5 2.8 20 64-83 161-180 (252)
197 PRK05134 bifunctional 3-demeth 42.2 30 0.00065 26.5 3.1 24 65-88 131-154 (233)
198 TIGR02263 benz_CoA_red_C benzo 41.9 39 0.00084 28.7 4.0 31 61-91 12-42 (380)
199 PRK10681 DNA-binding transcrip 41.5 85 0.0018 24.9 5.7 58 61-118 76-147 (252)
200 PF02390 Methyltransf_4: Putat 41.3 16 0.00035 28.1 1.5 69 22-110 84-156 (195)
201 PF03291 Pox_MCEL: mRNA cappin 40.9 17 0.00037 30.5 1.7 22 65-86 166-187 (331)
202 COG2264 PrmA Ribosomal protein 40.7 67 0.0014 26.9 5.1 47 60-110 238-284 (300)
203 COG4106 Tam Trans-aconitate me 40.2 26 0.00056 28.6 2.5 50 12-83 78-127 (257)
204 cd03283 ABC_MutS-like MutS-lik 39.9 1E+02 0.0022 23.6 5.7 14 26-39 105-118 (199)
205 PTZ00065 60S ribosomal protein 39.3 19 0.00042 26.6 1.5 11 28-38 35-46 (130)
206 PRK10309 galactitol-1-phosphat 38.7 61 0.0013 26.1 4.6 18 67-84 242-259 (347)
207 KOG1253|consensus 38.7 34 0.00075 30.7 3.2 38 25-89 182-219 (525)
208 PF03721 UDPG_MGDP_dh_N: UDP-g 38.2 58 0.0013 24.7 4.1 53 66-119 101-157 (185)
209 PLN02349 glycerol-3-phosphate 38.2 84 0.0018 27.6 5.4 55 28-83 239-298 (426)
210 PF13649 Methyltransf_25: Meth 37.8 19 0.00041 23.9 1.2 17 63-79 85-101 (101)
211 PF01209 Ubie_methyltran: ubiE 37.7 18 0.00038 28.7 1.2 37 65-104 133-169 (233)
212 PRK11783 rlmL 23S rRNA m(2)G24 37.2 85 0.0019 28.9 5.7 12 25-36 302-313 (702)
213 PRK10411 DNA-binding transcrip 36.8 1.2E+02 0.0026 24.0 5.9 52 59-110 75-139 (240)
214 KOG1678|consensus 36.8 15 0.00032 28.5 0.6 25 25-52 128-152 (204)
215 PF00891 Methyltransf_2: O-met 36.5 33 0.00072 26.5 2.6 40 49-95 168-209 (241)
216 cd01842 SGNH_hydrolase_like_5 36.5 1.1E+02 0.0023 23.9 5.3 75 7-91 28-105 (183)
217 PRK06274 indolepyruvate oxidor 36.2 1.1E+02 0.0024 23.1 5.4 20 71-90 82-101 (197)
218 KOG2361|consensus 36.1 41 0.0009 27.7 3.1 20 65-84 163-182 (264)
219 KOG1975|consensus 35.9 37 0.0008 29.2 2.9 67 25-104 170-250 (389)
220 TIGR00696 wecB_tagA_cpsF bacte 35.8 79 0.0017 24.1 4.5 36 77-112 73-108 (177)
221 PF02977 CarbpepA_inh: Carboxy 35.1 15 0.00033 22.4 0.3 18 73-90 29-46 (46)
222 COG4635 HemG Flavodoxin [Energ 34.5 1.5E+02 0.0033 22.9 5.8 62 25-105 46-112 (175)
223 PRK01544 bifunctional N5-gluta 33.3 55 0.0012 29.0 3.7 69 22-110 413-484 (506)
224 COG2813 RsmC 16S RNA G1207 met 33.0 1.1E+02 0.0024 25.7 5.2 51 25-104 36-86 (300)
225 KOG3349|consensus 32.8 50 0.0011 25.4 2.9 27 60-90 112-138 (170)
226 PRK13255 thiopurine S-methyltr 31.6 62 0.0013 25.3 3.4 26 64-89 134-159 (218)
227 COG4152 ABC-type uncharacteriz 31.0 63 0.0014 27.0 3.4 15 25-39 147-161 (300)
228 PF13614 AAA_31: AAA domain; P 30.8 24 0.00052 25.0 0.9 15 25-39 116-130 (157)
229 KOG2915|consensus 30.8 45 0.00098 28.0 2.6 12 24-35 175-186 (314)
230 KOG3421|consensus 30.4 16 0.00036 27.1 -0.1 12 28-39 34-45 (136)
231 PRK11727 23S rRNA mA1618 methy 29.8 71 0.0015 26.8 3.6 16 24-39 187-202 (321)
232 PRK11705 cyclopropane fatty ac 29.7 71 0.0015 27.2 3.7 24 65-88 247-270 (383)
233 COG2520 Predicted methyltransf 29.5 1.5E+02 0.0032 25.2 5.5 54 25-104 255-311 (341)
234 PF06306 CgtA: Beta-1,4-N-acet 29.4 90 0.002 26.7 4.1 47 61-111 99-145 (347)
235 cd01066 APP_MetAP A family inc 29.2 1.6E+02 0.0035 21.2 5.2 67 26-104 72-142 (207)
236 cd01979 Pchlide_reductase_N Pc 29.1 73 0.0016 27.0 3.7 56 52-107 60-119 (396)
237 COG2226 UbiE Methylase involve 29.1 42 0.00092 27.0 2.1 28 65-94 136-163 (238)
238 PRK13943 protein-L-isoaspartat 28.9 92 0.002 26.0 4.1 15 71-85 166-180 (322)
239 KOG3178|consensus 28.7 69 0.0015 27.3 3.4 29 51-86 248-276 (342)
240 PF01206 TusA: Sulfurtransfera 28.6 1.5E+02 0.0032 18.3 4.6 34 67-104 16-50 (70)
241 PRK13509 transcriptional repre 28.6 1.6E+02 0.0035 23.4 5.4 57 62-118 78-147 (251)
242 PF11769 DUF3313: Protein of u 28.6 1.3E+02 0.0028 22.8 4.7 44 25-73 46-90 (201)
243 TIGR01861 ANFD nitrogenase iro 28.5 68 0.0015 28.6 3.5 48 64-111 115-165 (513)
244 TIGR00345 arsA arsenite-activa 28.5 52 0.0011 26.6 2.5 17 25-41 111-127 (284)
245 COG1889 NOP1 Fibrillarin-like 28.5 1.5E+02 0.0033 23.9 5.1 40 63-102 157-200 (231)
246 PRK04243 50S ribosomal protein 28.3 36 0.00079 26.8 1.5 25 25-52 128-152 (196)
247 TIGR03029 EpsG chain length de 27.9 34 0.00074 27.0 1.4 12 24-35 210-221 (274)
248 PF00827 Ribosomal_L15e: Ribos 27.8 36 0.00078 26.8 1.4 25 26-53 128-152 (192)
249 PF02374 ArsA_ATPase: Anion-tr 27.6 80 0.0017 26.0 3.5 16 24-39 124-139 (305)
250 PTZ00026 60S ribosomal protein 27.5 38 0.00083 26.9 1.5 25 25-52 128-152 (204)
251 cd02042 ParA ParA and ParB of 27.4 46 0.001 21.9 1.8 13 26-38 39-51 (104)
252 cd03243 ABC_MutS_homologs The 27.2 1.9E+02 0.0041 21.7 5.3 14 26-39 108-121 (202)
253 TIGR03190 benz_CoA_bzdN benzoy 27.2 66 0.0014 27.2 3.1 15 77-91 25-39 (377)
254 PF02353 CMAS: Mycolic acid cy 27.1 47 0.001 27.0 2.1 25 65-89 146-170 (273)
255 TIGR03438 probable methyltrans 26.8 76 0.0016 25.8 3.3 27 64-90 156-182 (301)
256 COG1743 Adenine-specific DNA m 26.7 1.7E+02 0.0037 28.0 5.8 48 57-104 560-607 (875)
257 KOG2414|consensus 26.6 1.1E+02 0.0023 27.2 4.2 46 28-73 308-359 (488)
258 PF00448 SRP54: SRP54-type pro 26.3 2.4E+02 0.0052 21.5 5.8 12 24-35 81-92 (196)
259 PRK10906 DNA-binding transcrip 26.0 2.6E+02 0.0057 22.2 6.2 25 59-83 73-97 (252)
260 cd02037 MRP-like MRP (Multiple 26.0 44 0.00095 24.3 1.6 14 25-38 66-79 (169)
261 smart00534 MUTSac ATPase domai 25.9 2.5E+02 0.0054 20.8 5.7 14 26-39 78-91 (185)
262 COG2342 Predicted extracellula 25.9 3E+02 0.0064 23.2 6.5 62 24-109 41-105 (300)
263 COG2103 Predicted sugar phosph 25.8 1E+02 0.0022 25.8 3.8 20 66-85 48-67 (298)
264 PRK10742 putative methyltransf 25.2 2.1E+02 0.0046 23.3 5.5 25 11-35 147-173 (250)
265 PF09445 Methyltransf_15: RNA 25.2 62 0.0013 24.5 2.3 62 27-101 70-132 (163)
266 KOG1661|consensus 25.0 86 0.0019 25.4 3.1 16 68-83 176-191 (237)
267 PLN02490 MPBQ/MSBQ methyltrans 24.9 77 0.0017 26.8 3.0 19 66-84 196-214 (340)
268 TIGR01627 A_thal_3515 uncharac 24.9 1E+02 0.0022 24.8 3.5 33 72-110 55-87 (225)
269 PRK09489 rsmC 16S ribosomal RN 24.8 1.3E+02 0.0029 25.2 4.4 32 66-103 93-124 (342)
270 PF02005 TRM: N2,N2-dimethylgu 24.2 50 0.0011 28.3 1.8 41 23-90 118-158 (377)
271 cd03465 URO-D_like The URO-D _ 24.1 1.4E+02 0.0031 23.9 4.4 26 78-103 302-327 (330)
272 PF00107 ADH_zinc_N: Zinc-bind 24.0 38 0.00082 23.1 0.9 23 66-88 70-92 (130)
273 cd02035 ArsA ArsA ATPase funct 23.8 47 0.001 25.5 1.4 13 26-38 113-125 (217)
274 PRK09802 DNA-binding transcrip 23.3 2.3E+02 0.0049 22.8 5.4 56 61-116 90-159 (269)
275 PRK15052 D-tagatose-1,6-bispho 23.1 63 0.0014 28.4 2.2 19 81-103 15-33 (421)
276 PF09033 DFF-C: DNA Fragmentat 23.0 28 0.0006 26.6 0.0 13 29-41 49-61 (164)
277 COG1192 Soj ATPases involved i 22.9 54 0.0012 25.5 1.6 18 25-43 118-135 (259)
278 TIGR02015 BchY chlorophyllide 22.7 97 0.0021 26.8 3.3 28 62-89 73-100 (422)
279 KOG4174|consensus 22.1 4E+02 0.0087 22.2 6.5 61 24-91 135-196 (282)
280 PF11219 DUF3014: Protein of u 22.1 33 0.00071 26.1 0.2 40 31-70 102-141 (158)
281 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 22.1 2E+02 0.0043 22.0 4.7 15 25-39 159-173 (224)
282 TIGR01279 DPOR_bchN light-inde 22.1 89 0.0019 26.7 2.9 38 52-89 58-97 (407)
283 PRK05406 LamB/YcsF family prot 22.0 83 0.0018 25.6 2.5 60 51-111 78-144 (246)
284 PF15033 Kinocilin: Kinocilin 21.7 1.1E+02 0.0024 22.0 2.8 49 27-80 66-119 (124)
285 TIGR00571 dam DNA adenine meth 21.5 3.2E+02 0.0069 21.8 5.9 13 26-38 172-184 (266)
286 PF04378 RsmJ: Ribosomal RNA s 21.4 3.4E+02 0.0073 22.0 6.0 54 26-103 125-178 (245)
287 cd00550 ArsA_ATPase Oxyanion-t 21.4 57 0.0012 25.9 1.5 16 24-39 122-137 (254)
288 COG3963 Phospholipid N-methylt 21.3 3E+02 0.0064 21.7 5.3 44 24-87 115-158 (194)
289 PRK14476 nitrogenase molybdenu 21.1 1.6E+02 0.0035 25.6 4.4 43 63-105 79-123 (455)
290 TIGR01007 eps_fam capsular exo 21.1 57 0.0012 24.4 1.4 11 25-35 126-136 (204)
291 cd01972 Nitrogenase_VnfE_like 21.0 1.3E+02 0.0028 25.7 3.7 40 62-101 75-115 (426)
292 COG0500 SmtA SAM-dependent met 20.9 1.7E+02 0.0037 18.3 3.5 30 64-93 134-163 (257)
293 PF06080 DUF938: Protein of un 20.9 92 0.002 24.6 2.5 43 65-107 121-168 (204)
294 COG1117 PstB ABC-type phosphat 20.7 62 0.0013 26.4 1.6 15 25-39 166-180 (253)
295 PF12690 BsuPI: Intracellular 20.4 74 0.0016 21.2 1.7 45 20-84 19-65 (82)
296 cd03288 ABCC_SUR2 The SUR doma 20.3 2.3E+02 0.005 22.1 4.8 15 25-39 173-187 (257)
297 PF03161 LAGLIDADG_2: LAGLIDAD 20.2 58 0.0013 24.4 1.3 30 75-104 121-150 (178)
298 cd03231 ABC_CcmA_heme_exporter 20.0 3.5E+02 0.0075 20.2 5.6 15 25-39 142-156 (201)
No 1
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.6e-41 Score=280.11 Aligned_cols=125 Identities=41% Similarity=0.667 Sum_probs=110.0
Q ss_pred cccccC-ccccccCCCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCC
Q psy15213 11 INKKTN-NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLW 89 (139)
Q Consensus 11 ~~~~~~-~~~~~~~~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~ 89 (139)
++.++. .+..|.....||+|||||||||+|++||||+++|.++++++.+++++|++||.+|+++|||||+|||||||++
T Consensus 213 ~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~ 292 (355)
T COG0144 213 VNKDARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT 292 (355)
T ss_pred EecccccccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence 344443 3345555557999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHhhCCCcEEecCC-----------------CcccCCCCCCCCCCcEEEEEEEecC
Q psy15213 90 FEESEEQAIIFSKNHKDSIRLNSP-----------------GQLLPTVNKKQDYDGFFYSLFQKRK 138 (139)
Q Consensus 90 ~~ENE~vV~~~l~~~~~~~~~~~~-----------------~~~~P~~~~~~~~~GfFia~l~k~~ 138 (139)
|+|||+||++||++++++++.+.. .+++||. ++++|||+|+|+|..
T Consensus 293 ~eENE~vV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~p~~---~~~dGFFia~l~k~~ 355 (355)
T COG0144 293 PEENEEVVERFLERHPDFELEPVRLPWGPLFEGLGSELGKTRRLYPHV---HGTDGFFIAKLRKKR 355 (355)
T ss_pred hhcCHHHHHHHHHhCCCceeecccccccccccccccccCCeEEECCCC---CCCCCeEEEEEEeCC
Confidence 999999999999999998766531 4789988 788999999999863
No 2
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=100.00 E-value=1.2e-38 Score=274.81 Aligned_cols=111 Identities=28% Similarity=0.511 Sum_probs=101.8
Q ss_pred CCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCCccccHHHHHHHHhhC
Q psy15213 25 KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH 104 (139)
Q Consensus 25 ~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~l~~~ 104 (139)
..||+|||||||||+|+++|+|+++|.|+++++.+++.+|++||.+|+++|||||+|||||||++++|||+||++||+++
T Consensus 182 ~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~~ 261 (470)
T PRK11933 182 ETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKETY 261 (470)
T ss_pred hhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHHC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCc-EEecCC---------------CcccCCCCCCCCCCcEEEEEEEecC
Q psy15213 105 KDS-IRLNSP---------------GQLLPTVNKKQDYDGFFYSLFQKRK 138 (139)
Q Consensus 105 ~~~-~~~~~~---------------~~~~P~~~~~~~~~GfFia~l~k~~ 138 (139)
+++ ++.+++ .|++||. ++++|||+|+|+|.+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~---~~~dGfFiA~lrk~~ 308 (470)
T PRK11933 262 PDAVEFEPLGDLFPGAEKALTEEGFLHVFPQI---YDSEGFFVARLRKTA 308 (470)
T ss_pred CCcEEeccccccccccccccCCCCeEEECCCC---CCCcceeeEEEEecC
Confidence 874 333221 2789988 899999999999974
No 3
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=100.00 E-value=5.8e-39 Score=261.18 Aligned_cols=120 Identities=42% Similarity=0.679 Sum_probs=106.6
Q ss_pred cccCccccccCCCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcc----cCCcEEEEeccCC
Q psy15213 13 KKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKML----KPGGKLLFVTCSL 88 (139)
Q Consensus 13 ~~~~~~~~~~~~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~l----k~gG~lvYsTCS~ 88 (139)
.|+.....|.....||+||+||||||+|+++|+|+++|.++++++.+++.+|++||.+|++++ ||||+|||||||+
T Consensus 143 ~D~~~~~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 143 ADARKLDPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp SHHHHHHHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred eccccccccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 334444445555579999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred CccccHHHHHHHHhhCCCcEEecCC-----------------CcccCCCCCCCCCCcEEEEEEE
Q psy15213 89 WFEESEEQAIIFSKNHKDSIRLNSP-----------------GQLLPTVNKKQDYDGFFYSLFQ 135 (139)
Q Consensus 89 ~~~ENE~vV~~~l~~~~~~~~~~~~-----------------~~~~P~~~~~~~~~GfFia~l~ 135 (139)
+++|||+||++||++++++++++++ .+++||. +++||||+|+||
T Consensus 223 ~~eENE~vV~~fl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~P~~---~~~dGFFiA~lr 283 (283)
T PF01189_consen 223 SPEENEEVVEKFLKRHPDFELVPIPLPEPPPGFKSYPIGEGCLRILPHR---HGTDGFFIAKLR 283 (283)
T ss_dssp HGGGTHHHHHHHHHHSTSEEEECCESSTCEEESSGGCTGGGSEEESTTT---SSSSSEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCcEEEeccccccccccccccCCCCEEEeCCCC---CCCCCEEEEEeC
Confidence 9999999999999999998876542 3678988 999999999997
No 4
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=100.00 E-value=2.2e-35 Score=237.32 Aligned_cols=109 Identities=32% Similarity=0.589 Sum_probs=100.3
Q ss_pred CCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCCccccHHHHHHHHhhC
Q psy15213 25 KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH 104 (139)
Q Consensus 25 ~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~l~~~ 104 (139)
..||+||+||||||+|+++++|+.+|.++++++..++..|++||.+|+++|||||+|||||||++++|||+||++||+++
T Consensus 139 ~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~~ 218 (264)
T TIGR00446 139 PKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLEKR 218 (264)
T ss_pred cCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHHhC
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEecC---------------C--CcccCCCCCCCCCCcEEEEEEEe
Q psy15213 105 KDSIRLNS---------------P--GQLLPTVNKKQDYDGFFYSLFQK 136 (139)
Q Consensus 105 ~~~~~~~~---------------~--~~~~P~~~~~~~~~GfFia~l~k 136 (139)
+++...+. . .+++|+. +++||||+|+|+|
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~---~~~dGfF~a~l~k 264 (264)
T TIGR00446 219 PDVVEELPKGDEFFGANKGKEEVKGALRVFPQI---YDCEGFFVAKLRK 264 (264)
T ss_pred CCcEEeccCCcccccccccccccCCeEEECCCC---CCCCcEEEEEEEC
Confidence 88764421 0 2578887 8999999999986
No 5
>KOG1122|consensus
Probab=100.00 E-value=6.2e-36 Score=252.81 Aligned_cols=110 Identities=28% Similarity=0.532 Sum_probs=103.9
Q ss_pred CcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCCccccHHHHHHHHhhCC
Q psy15213 26 YFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 105 (139)
Q Consensus 26 ~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~l~~~~ 105 (139)
.||+|||||||||+|++.|++.++|.++.+++.++..+|++||.+|++++++||+|||||||+.++|||+||+|+|.++|
T Consensus 312 ~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~yaL~K~p 391 (460)
T KOG1122|consen 312 SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYALKKRP 391 (460)
T ss_pred ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHHHHHHHhCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEecCC---------------------CcccCCCCCCCCCCcEEEEEEEecC
Q psy15213 106 DSIRLNSP---------------------GQLLPTVNKKQDYDGFFYSLFQKRK 138 (139)
Q Consensus 106 ~~~~~~~~---------------------~~~~P~~~~~~~~~GfFia~l~k~~ 138 (139)
+++++|-. .|++||. |.+||||+|+|+|.+
T Consensus 392 ~~kL~p~~~~iG~~G~~~~~~~~psl~~~~r~yPh~---hnmdgffvaKl~k~s 442 (460)
T KOG1122|consen 392 EVKLVPTGLDIGGEGRFRGGRFHPSLKLTRRFYPHV---HNMDGFFVAKLKKAS 442 (460)
T ss_pred ceEeccccccCCCCCcccCcccCcchhheeeecCcc---cCCchHHHHHHHhhc
Confidence 99887641 3688888 999999999999865
No 6
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=8.8e-35 Score=247.87 Aligned_cols=111 Identities=38% Similarity=0.703 Sum_probs=104.1
Q ss_pred CCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCCccccHHHHHHHHhhC
Q psy15213 25 KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH 104 (139)
Q Consensus 25 ~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~l~~~ 104 (139)
+.||+||+||||||+|+++|+|+++|.++++++.+++.+|++||.+|+++|||||+|||||||++++|||+||.+||+++
T Consensus 324 ~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~ 403 (434)
T PRK14901 324 GYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARH 403 (434)
T ss_pred ccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEecCCCcccCCCCCCCCCCcEEEEEEEecC
Q psy15213 105 KDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKRK 138 (139)
Q Consensus 105 ~~~~~~~~~~~~~P~~~~~~~~~GfFia~l~k~~ 138 (139)
|++++.+...+++|+. +++||||+|+|+|.+
T Consensus 404 ~~~~~~~~~~~~~P~~---~~~dGfF~a~l~k~~ 434 (434)
T PRK14901 404 PDWKLEPPKQKIWPHR---QDGDGFFMAVLRKKS 434 (434)
T ss_pred CCcEecCCCCccCCCC---CCCCcEEEEEEEeCC
Confidence 9998665432389998 999999999999974
No 7
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=100.00 E-value=6.9e-34 Score=241.75 Aligned_cols=114 Identities=43% Similarity=0.821 Sum_probs=103.9
Q ss_pred ccCCCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCCccccHHHHHHH
Q psy15213 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIF 100 (139)
Q Consensus 21 ~~~~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~ 100 (139)
|.....||+|++||||||+|+++++|+++|.++++++.+++.+|++||.+|+++|||||+|||||||++++|||+||++|
T Consensus 304 ~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~ 383 (426)
T TIGR00563 304 WAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAF 383 (426)
T ss_pred cccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHH
Confidence 43456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCcEEecC-------C--CcccCCCCCCCCCCcEEEEEEEec
Q psy15213 101 SKNHKDSIRLNS-------P--GQLLPTVNKKQDYDGFFYSLFQKR 137 (139)
Q Consensus 101 l~~~~~~~~~~~-------~--~~~~P~~~~~~~~~GfFia~l~k~ 137 (139)
|+++|++.+... . .+++|+. +++||||+|+|+|.
T Consensus 384 l~~~~~~~~~~~~~~~~~~~~~~~~~P~~---~~~dGff~a~l~k~ 426 (426)
T TIGR00563 384 LQEHPDFPFEKTGTPEQVRDGGLQILPHA---EEGDGFFYAKLIKK 426 (426)
T ss_pred HHhCCCCeeccCCCccccCCCcEEECCCC---CCCCCeEEEEEEeC
Confidence 999998764421 1 3689988 89999999999984
No 8
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=4.4e-33 Score=237.82 Aligned_cols=111 Identities=35% Similarity=0.600 Sum_probs=101.0
Q ss_pred CCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCCccccHHHHHHHHhh
Q psy15213 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKN 103 (139)
Q Consensus 24 ~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~l~~ 103 (139)
.+.||+||+||||||+|+++++|+++|.++++++..++..|++||.+|+++|||||+|||||||++++|||+||++||++
T Consensus 305 ~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~ 384 (431)
T PRK14903 305 QDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVYE 384 (431)
T ss_pred hccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHHh
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEecCC----------------CcccCCCCCCCCCCcEEEEEEEecC
Q psy15213 104 HKDSIRLNSP----------------GQLLPTVNKKQDYDGFFYSLFQKRK 138 (139)
Q Consensus 104 ~~~~~~~~~~----------------~~~~P~~~~~~~~~GfFia~l~k~~ 138 (139)
+|++++++.+ .+++|+ .++||||+|+|+|.+
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~----~~~dGFf~a~L~k~~ 431 (431)
T PRK14903 385 QKDAEVIDIRDKLEEFEVEGIWDGYGFLMLPD----ETLTPFYVSVLRKMG 431 (431)
T ss_pred CCCcEEecccccccccccccccCCCcEEECcC----CCCCcEEEEEEEeCC
Confidence 9998765431 146775 368999999999974
No 9
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=1.3e-32 Score=235.15 Aligned_cols=119 Identities=32% Similarity=0.518 Sum_probs=105.4
Q ss_pred ccccccCCCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCCccccHHH
Q psy15213 17 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQ 96 (139)
Q Consensus 17 ~~~~~~~~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~v 96 (139)
|...+.....||+|++||||||+|+++|+|+++|.++++++..++..|.++|.+|.++|||||+|||||||++++|||+|
T Consensus 309 Da~~~~~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~ 388 (445)
T PRK14904 309 DARSFSPEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQ 388 (445)
T ss_pred cccccccCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHH
Confidence 33344445689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCcEEecCC----------------CcccCCCCCCC-CCCcEEEEEEEecC
Q psy15213 97 AIIFSKNHKDSIRLNSP----------------GQLLPTVNKKQ-DYDGFFYSLFQKRK 138 (139)
Q Consensus 97 V~~~l~~~~~~~~~~~~----------------~~~~P~~~~~~-~~~GfFia~l~k~~ 138 (139)
|++||+++++++..+.+ .+++|+. + ++||||+|+|+|..
T Consensus 389 v~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~P~~---~~~~dGfF~a~l~k~~ 444 (445)
T PRK14904 389 IEAFLQRHPEFSAEPSPGSLPEPFHEVAHPKGAILTLPGE---HEGFDGGFAQRLRKNA 444 (445)
T ss_pred HHHHHHhCCCCEEeccccccccccccccCCCCcEEECCCC---CCCCCcEEEEEEEecC
Confidence 99999999887654321 2578876 5 78999999999975
No 10
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.97 E-value=2.1e-31 Score=226.69 Aligned_cols=121 Identities=47% Similarity=0.876 Sum_probs=108.1
Q ss_pred ccCccccccCCCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCCcccc
Q psy15213 14 KTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEES 93 (139)
Q Consensus 14 ~~~~~~~~~~~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~EN 93 (139)
+..+...|.....||+|++||||||+|+++++|+++|.+++.++.+++..|+++|.+|.++|||||+|||||||++++||
T Consensus 301 D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~En 380 (427)
T PRK10901 301 DARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEEN 380 (427)
T ss_pred CcccchhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhC
Confidence 33333345445689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCcEEecCC------CcccCCCCCCCCCCcEEEEEEEec
Q psy15213 94 EEQAIIFSKNHKDSIRLNSP------GQLLPTVNKKQDYDGFFYSLFQKR 137 (139)
Q Consensus 94 E~vV~~~l~~~~~~~~~~~~------~~~~P~~~~~~~~~GfFia~l~k~ 137 (139)
|++|.+++++++++++++.. .+++|+. +++||||+|+|+|.
T Consensus 381 e~~v~~~l~~~~~~~~~~~~~~~~~~~~~~P~~---~~~dGff~a~l~k~ 427 (427)
T PRK10901 381 EQQIKAFLARHPDAELLDTGTPQQPGRQLLPGE---EDGDGFFYALLIKR 427 (427)
T ss_pred HHHHHHHHHhCCCCEEecCCCCCCCceEECCCC---CCCCCeEEEEEEEC
Confidence 99999999999998876532 4789988 99999999999984
No 11
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.97 E-value=8.3e-31 Score=223.74 Aligned_cols=111 Identities=38% Similarity=0.641 Sum_probs=103.5
Q ss_pred CCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCCccccHHHHHHHHhhC
Q psy15213 25 KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH 104 (139)
Q Consensus 25 ~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~l~~~ 104 (139)
+.||+|++||||||.|+++++|+++|.+++.++..++.+|+++|.+|.++|||||+|||||||++++|||+||.++++++
T Consensus 319 ~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~ 398 (444)
T PRK14902 319 EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEH 398 (444)
T ss_pred ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEecCC---------------CcccCCCCCCCCCCcEEEEEEEecC
Q psy15213 105 KDSIRLNSP---------------GQLLPTVNKKQDYDGFFYSLFQKRK 138 (139)
Q Consensus 105 ~~~~~~~~~---------------~~~~P~~~~~~~~~GfFia~l~k~~ 138 (139)
+++++++.. .+++|+. +++||||+|+|+|.+
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~---~~~dGfF~a~l~k~~ 444 (444)
T PRK14902 399 PEFELVPLQHEKPDELVYEVKDGYLQILPND---YGTDGFFIAKLRKKG 444 (444)
T ss_pred CCcEEecccccccccccccccCCeEEECCCC---CCCCCeEEEEEEECC
Confidence 888766542 2678987 899999999999975
No 12
>KOG2198|consensus
Probab=99.93 E-value=1.8e-26 Score=192.98 Aligned_cols=85 Identities=32% Similarity=0.504 Sum_probs=77.5
Q ss_pred CCCCcCEEEEcCCCCCccccccCCCCCcc-CCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCCccccHHHHHHHH
Q psy15213 23 KNKYFDRILADLPCTGSGVVRRNPDIPWL-RRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFS 101 (139)
Q Consensus 23 ~~~~fD~ILlDaPCSg~G~~~r~p~~~~~-~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~l 101 (139)
+...||+||||+||||+|+++++|++... |+..+-..|..+|.+||.+++++||+||+|||||||++|.|||.||+.+|
T Consensus 233 ~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEaVV~~~L 312 (375)
T KOG2198|consen 233 EQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEAVVQEAL 312 (375)
T ss_pred hhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHHHHHHHH
Confidence 45789999999999999999999998644 66666688999999999999999999999999999999999999999999
Q ss_pred hhCCCc
Q psy15213 102 KNHKDS 107 (139)
Q Consensus 102 ~~~~~~ 107 (139)
+...+.
T Consensus 313 ~~~~~~ 318 (375)
T KOG2198|consen 313 QKVGGA 318 (375)
T ss_pred HHhcCc
Confidence 987653
No 13
>KOG2360|consensus
Probab=99.72 E-value=1.1e-17 Score=140.87 Aligned_cols=109 Identities=29% Similarity=0.469 Sum_probs=86.5
Q ss_pred CCcCEEEEcCCCCCccccccCCCCC--ccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCCccccHHHHHHHHh
Q psy15213 25 KYFDRILADLPCTGSGVVRRNPDIP--WLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSK 102 (139)
Q Consensus 25 ~~fD~ILlDaPCSg~G~~~r~p~~~--~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~l~ 102 (139)
+....||+||+|||+|+..|.-... -...+++++.|+..|..++.+|+.+-+ --++||||||.+.+|||+||+.+|.
T Consensus 283 ~~v~~iL~DpscSgSgm~~r~~~~~~~e~~~~~rL~~L~~fq~~~~~hal~fp~-~k~vvystcs~~reene~vv~d~l~ 361 (413)
T KOG2360|consen 283 RDVTYILVDPSCSGSGMVSRQDEDPGAETESPERLENLQSFQIRILKHALTFPN-LKRLVYSTCSLHREENEQVVQEVLQ 361 (413)
T ss_pred cceeEEEeCCCCCCCccccceeeccCCCcccHHHHHHHHHHHHHHHHHHhcCCc-hhheeeecchhhhhhhhHHHHHHHh
Confidence 4567899999999999988765544 345678999999999999999999644 4599999999999999999999999
Q ss_pred hCCCcEEecC----C----------------CcccCCCCCCCCCCcEEEEEEEec
Q psy15213 103 NHKDSIRLNS----P----------------GQLLPTVNKKQDYDGFFYSLFQKR 137 (139)
Q Consensus 103 ~~~~~~~~~~----~----------------~~~~P~~~~~~~~~GfFia~l~k~ 137 (139)
..|....+.. | .+-.| ...+++|||||+|+|.
T Consensus 362 ~~p~~~~l~~kK~~p~w~~rg~~~~~~~e~~lr~~p---~~~~~~gffva~fer~ 413 (413)
T KOG2360|consen 362 QNPDAKRLAPKKVLPAWPHRGLSTFSGAEHCLRASP---KSTLTIGFFVALFERV 413 (413)
T ss_pred hChhHhhhchhhcchhhhhcCCccccccccceeccc---CCCCcceEEEEEeecC
Confidence 8876533221 1 12222 4588999999999873
No 14
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.06 E-value=3.4e-10 Score=96.53 Aligned_cols=79 Identities=20% Similarity=0.366 Sum_probs=72.0
Q ss_pred cccccccccccccCccccccC-----CCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccC
Q psy15213 3 AGEIESSDINKKTNNRFRFYK-----NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKP 77 (139)
Q Consensus 3 ~~~i~~~~~~~~~~~~~~~~~-----~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~ 77 (139)
+|+++..+|.-...|+..|.. +.+||+|++||| ++.++++...+..+...+|+..|+++|+|
T Consensus 262 LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPP-------------sF~r~k~~~~~~~rdy~~l~~~~~~iL~p 328 (393)
T COG1092 262 LNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILDPP-------------SFARSKKQEFSAQRDYKDLNDLALRLLAP 328 (393)
T ss_pred hcCCCccceeeehhhHHHHHHHHHhcCCcccEEEECCc-------------ccccCcccchhHHHHHHHHHHHHHHHcCC
Confidence 789999999999999999965 569999999999 77778888899999999999999999999
Q ss_pred CcEEEEeccCCCccccH
Q psy15213 78 GGKLLFVTCSLWFEESE 94 (139)
Q Consensus 78 gG~lvYsTCS~~~~ENE 94 (139)
||+++.||||.....++
T Consensus 329 gG~l~~~s~~~~~~~~~ 345 (393)
T COG1092 329 GGTLVTSSCSRHFSSDL 345 (393)
T ss_pred CCEEEEEecCCccCHHH
Confidence 99999999999987775
No 15
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.74 E-value=6.1e-09 Score=85.56 Aligned_cols=76 Identities=29% Similarity=0.448 Sum_probs=53.0
Q ss_pred cccccccccccccCccccccC----CCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCC
Q psy15213 3 AGEIESSDINKKTNNRFRFYK----NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPG 78 (139)
Q Consensus 3 ~~~i~~~~~~~~~~~~~~~~~----~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~g 78 (139)
+|+++...+.-...|+..|+. +++||.|++||| ++.++...+ .+.+.+|+..|+++++||
T Consensus 168 lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPP-------------sF~k~~~~~---~~~y~~L~~~a~~ll~~g 231 (286)
T PF10672_consen 168 LNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILDPP-------------SFAKSKFDL---ERDYKKLLRRAMKLLKPG 231 (286)
T ss_dssp HTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--S-------------SEESSTCEH---HHHHHHHHHHHHHTEEEE
T ss_pred HcCCCccceEEEecCHHHHHHHHhcCCCCCEEEECCC-------------CCCCCHHHH---HHHHHHHHHHHHHhcCCC
Confidence 678887888888888887653 579999999999 333332223 467889999999999999
Q ss_pred cEEEEeccCCCccccH
Q psy15213 79 GKLLFVTCSLWFEESE 94 (139)
Q Consensus 79 G~lvYsTCS~~~~ENE 94 (139)
|.|+.||||.+...+.
T Consensus 232 G~l~~~scs~~i~~~~ 247 (286)
T PF10672_consen 232 GLLLTCSCSHHISPDF 247 (286)
T ss_dssp EEEEEEE--TTS-HHH
T ss_pred CEEEEEcCCcccCHHH
Confidence 9999999999987653
No 16
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.65 E-value=8.2e-08 Score=81.94 Aligned_cols=87 Identities=20% Similarity=0.269 Sum_probs=57.7
Q ss_pred ccccccccccccCcccccc-----CCCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCC
Q psy15213 4 GEIESSDINKKTNNRFRFY-----KNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPG 78 (139)
Q Consensus 4 ~~i~~~~~~~~~~~~~~~~-----~~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~g 78 (139)
|++....+.-...|...|. .++.||.|++|||+. ..+++.+....+...+++..|+++|+||
T Consensus 266 Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~f-------------~~~k~~l~~~~~~y~~l~~~a~~lLk~g 332 (396)
T PRK15128 266 NKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKF-------------VENKSQLMGACRGYKDINMLAIQLLNPG 332 (396)
T ss_pred cCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEECCCCC-------------CCChHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3443223333344555543 245899999999943 2233456666667889999999999999
Q ss_pred cEEEEeccCCCc--cccHHHHHHHHhh
Q psy15213 79 GKLLFVTCSLWF--EESEEQAIIFSKN 103 (139)
Q Consensus 79 G~lvYsTCS~~~--~ENE~vV~~~l~~ 103 (139)
|.|+++|||-+. ++=.+.|.....+
T Consensus 333 G~lv~~scs~~~~~~~f~~~v~~aa~~ 359 (396)
T PRK15128 333 GILLTFSCSGLMTSDLFQKIIADAAID 359 (396)
T ss_pred eEEEEEeCCCcCCHHHHHHHHHHHHHH
Confidence 999999999554 4444555555443
No 17
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.15 E-value=4.4e-06 Score=75.82 Aligned_cols=79 Identities=19% Similarity=0.336 Sum_probs=55.4
Q ss_pred ccccccccccccCccccccC--CCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEE
Q psy15213 4 GEIESSDINKKTNNRFRFYK--NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKL 81 (139)
Q Consensus 4 ~~i~~~~~~~~~~~~~~~~~--~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~l 81 (139)
|++....+.-...|...|.. ++.||.|++|||..+.+. ...++....+.+.+++..+.++|+|||.+
T Consensus 584 ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP~f~~~~-----------~~~~~~~~~~~y~~l~~~a~~lL~~gG~l 652 (702)
T PRK11783 584 NGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPPTFSNSK-----------RMEDSFDVQRDHVALIKDAKRLLRPGGTL 652 (702)
T ss_pred hCCCccceEEEEccHHHHHHHcCCCcCEEEECCCCCCCCC-----------ccchhhhHHHHHHHHHHHHHHHcCCCCEE
Confidence 34432344445556666642 468999999999665421 11234456677889999999999999999
Q ss_pred EEeccCCCcccc
Q psy15213 82 LFVTCSLWFEES 93 (139)
Q Consensus 82 vYsTCS~~~~EN 93 (139)
++++|+-.....
T Consensus 653 ~~~~~~~~~~~~ 664 (702)
T PRK11783 653 YFSNNKRGFKMD 664 (702)
T ss_pred EEEeCCccCChh
Confidence 999999877654
No 18
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=97.89 E-value=2.7e-05 Score=62.46 Aligned_cols=76 Identities=16% Similarity=0.145 Sum_probs=52.1
Q ss_pred CCcCEEEEcCCCCCcccccc-CCCCCccCCHhHH---HHHHHHHHHHHHHHHhcccCCcEEEEeccCCCccccHHHHHHH
Q psy15213 25 KYFDRILADLPCTGSGVVRR-NPDIPWLRRKNDI---KKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIF 100 (139)
Q Consensus 25 ~~fD~ILlDaPCSg~G~~~r-~p~~~~~~~~~~~---~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~ 100 (139)
..||.|++||||...+.+.+ .|+.++......+ ......+++++.+|.++|+|||.+++.+.. ...++ |...
T Consensus 152 ~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~---~~~~~-v~~~ 227 (251)
T TIGR03704 152 GRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE---RQAPL-AVEA 227 (251)
T ss_pred CCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc---chHHH-HHHH
Confidence 47999999999998887665 3444322222222 245678999999999999999999998653 22334 4455
Q ss_pred HhhC
Q psy15213 101 SKNH 104 (139)
Q Consensus 101 l~~~ 104 (139)
++++
T Consensus 228 l~~~ 231 (251)
T TIGR03704 228 FARA 231 (251)
T ss_pred HHHC
Confidence 5543
No 19
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=97.58 E-value=1.9e-05 Score=54.65 Aligned_cols=51 Identities=27% Similarity=0.464 Sum_probs=34.4
Q ss_pred CCCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccC
Q psy15213 23 KNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 87 (139)
Q Consensus 23 ~~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS 87 (139)
....||.|+.|||........ ....+...+++.++.++|+|||.+++.+|.
T Consensus 67 ~~~~~D~Iv~npP~~~~~~~~--------------~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~ 117 (117)
T PF13659_consen 67 PDGKFDLIVTNPPYGPRSGDK--------------AALRRLYSRFLEAAARLLKPGGVLVFITPA 117 (117)
T ss_dssp TTT-EEEEEE--STTSBTT------------------GGCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred cCceeEEEEECCCCccccccc--------------hhhHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 457999999999976442111 111116678999999999999999998873
No 20
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=97.54 E-value=0.00069 Score=55.26 Aligned_cols=92 Identities=16% Similarity=0.134 Sum_probs=56.2
Q ss_pred CCCCcCEEEEcCCCCCccccccCCCCCccCCHhHH----HHHHHHHHHHHHHHHhcccCCcEEEEeccCCCccccHHHHH
Q psy15213 23 KNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDI----KKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAI 98 (139)
Q Consensus 23 ~~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~----~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~ 98 (139)
....||.|+.|||+...+.+..-+.. +...+... ..-...++.++..+.+.|+|||.++.-+.. +.+.|.
T Consensus 186 ~~~~fD~Iv~NPPy~~~~~~~~l~~~-~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~-----~~~~v~ 259 (284)
T TIGR03533 186 PGRKYDLIVSNPPYVDAEDMADLPAE-YHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN-----SMEALE 259 (284)
T ss_pred CCCCccEEEECCCCCCccchhhCCHh-hhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc-----CHHHHH
Confidence 34579999999999877665332211 11111111 122357789999999999999999865442 223556
Q ss_pred HHHhhCCCcEEecCCCcccCCCCCCCCCCcEEE
Q psy15213 99 IFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFY 131 (139)
Q Consensus 99 ~~l~~~~~~~~~~~~~~~~P~~~~~~~~~GfFi 131 (139)
.++...+ +. +... .++.+|||+
T Consensus 260 ~~~~~~~-~~-------~~~~---~~~~~~~~~ 281 (284)
T TIGR03533 260 EAYPDVP-FT-------WLEF---ENGGDGVFL 281 (284)
T ss_pred HHHHhCC-Cc-------eeee---cCCCcEEEE
Confidence 6666542 21 1222 267889986
No 21
>PRK14967 putative methyltransferase; Provisional
Probab=97.48 E-value=0.00054 Score=53.46 Aligned_cols=64 Identities=22% Similarity=0.351 Sum_probs=43.0
Q ss_pred ccCCCCcCEEEEcCC---CCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCC
Q psy15213 21 FYKNKYFDRILADLP---CTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSL 88 (139)
Q Consensus 21 ~~~~~~fD~ILlDaP---CSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~ 88 (139)
+.....||.|+++|| |+..+...+.|...|....+ ....+.+++.++.++||+||++++.+-+.
T Consensus 96 ~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~ 162 (223)
T PRK14967 96 AVEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPD----GRAVLDRLCDAAPALLAPGGSLLLVQSEL 162 (223)
T ss_pred hccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCc----HHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 334568999999987 44555444445444432222 22456789999999999999999855444
No 22
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=97.31 E-value=0.00055 Score=56.63 Aligned_cols=53 Identities=19% Similarity=0.221 Sum_probs=40.5
Q ss_pred CCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCC
Q psy15213 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLW 89 (139)
Q Consensus 24 ~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~ 89 (139)
.+.||.|+.||||....... ......++.++|..+.+.|||||+++|.+++-.
T Consensus 246 ~~~~D~Iv~dPPyg~~~~~~-------------~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~ 298 (329)
T TIGR01177 246 SESVDAIATDPPYGRSTTAA-------------GDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI 298 (329)
T ss_pred cCCCCEEEECCCCcCccccc-------------CCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC
Confidence 36899999999986432111 012456789999999999999999999988754
No 23
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=97.28 E-value=0.00084 Score=50.46 Aligned_cols=75 Identities=23% Similarity=0.213 Sum_probs=47.6
Q ss_pred CCcCEEEEcCCCCCcc-ccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCCccccHHHHHHHHhh
Q psy15213 25 KYFDRILADLPCTGSG-VVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKN 103 (139)
Q Consensus 25 ~~fD~ILlDaPCSg~G-~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~l~~ 103 (139)
..||.|+.++|+-... ..++++...+.+.... .-...+.++|.++.++|+|||.+++.+++.. ++..+..+|++
T Consensus 81 ~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~---~~~~~~~~l~~ 155 (179)
T TIGR00537 81 GKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGK--DGRKVIDRFLDELPEILKEGGRVQLIQSSLN---GEPDTFDKLDE 155 (179)
T ss_pred CcccEEEECCCCCCCcchhcccchhhhhhhcCC--chHHHHHHHHHhHHHhhCCCCEEEEEEeccC---ChHHHHHHHHh
Confidence 4899999999985332 2222111111111111 1134578899999999999999999887665 34566666766
Q ss_pred C
Q psy15213 104 H 104 (139)
Q Consensus 104 ~ 104 (139)
.
T Consensus 156 ~ 156 (179)
T TIGR00537 156 R 156 (179)
T ss_pred C
Confidence 5
No 24
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=96.87 E-value=0.0054 Score=47.70 Aligned_cols=78 Identities=17% Similarity=0.242 Sum_probs=46.3
Q ss_pred cCCCCcCEEEEcCCCCCccccccCC-CCCccCCHhHH----HHHHHHHHHHHHHHHhcccCCcEEEEeccCCCccccHHH
Q psy15213 22 YKNKYFDRILADLPCTGSGVVRRNP-DIPWLRRKNDI----KKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQ 96 (139)
Q Consensus 22 ~~~~~fD~ILlDaPCSg~G~~~r~p-~~~~~~~~~~~----~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~v 96 (139)
...+.||.|+.+||+...+....-+ +++ ...+... ..-......++.++.++|+|||.+++.+ +. ...+.
T Consensus 150 ~~~~~fD~Vi~npPy~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~-~~---~~~~~ 224 (251)
T TIGR03534 150 LPGGKFDLIVSNPPYIPEADIHLLDPEVR-FHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI-GY---DQGEA 224 (251)
T ss_pred CcCCceeEEEECCCCCchhhhhhcChhhh-hcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE-Cc---cHHHH
Confidence 3457899999999999876543211 111 0000000 0112344689999999999999999853 22 22344
Q ss_pred HHHHHhhC
Q psy15213 97 AIIFSKNH 104 (139)
Q Consensus 97 V~~~l~~~ 104 (139)
+..++.+.
T Consensus 225 ~~~~l~~~ 232 (251)
T TIGR03534 225 VRALFEAA 232 (251)
T ss_pred HHHHHHhC
Confidence 55556654
No 25
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.83 E-value=0.004 Score=49.32 Aligned_cols=76 Identities=18% Similarity=0.264 Sum_probs=47.8
Q ss_pred CCcCEEEEcCCCCCccccc-cCCCCCccCCHhHH---HHHHHHHHHHHHHHHhcccCCcEEEEeccCCCccccHHHHHHH
Q psy15213 25 KYFDRILADLPCTGSGVVR-RNPDIPWLRRKNDI---KKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIF 100 (139)
Q Consensus 25 ~~fD~ILlDaPCSg~G~~~-r~p~~~~~~~~~~~---~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~ 100 (139)
..||.|+.+||+...+.+. ..++++.......+ ......+..++.++.++|+|||.+++.+. . .. .+.+..+
T Consensus 174 ~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g-~--~~-~~~~~~~ 249 (275)
T PRK09328 174 GRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG-Y--DQ-GEAVRAL 249 (275)
T ss_pred CceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC-c--hH-HHHHHHH
Confidence 6899999999999877654 22232211111111 12346778999999999999999998542 2 22 2345556
Q ss_pred HhhC
Q psy15213 101 SKNH 104 (139)
Q Consensus 101 l~~~ 104 (139)
+...
T Consensus 250 l~~~ 253 (275)
T PRK09328 250 LAAA 253 (275)
T ss_pred HHhC
Confidence 6543
No 26
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.65 E-value=0.0048 Score=50.96 Aligned_cols=58 Identities=16% Similarity=0.215 Sum_probs=39.7
Q ss_pred CCCCcCEEEEcCCCCCccccccC-------CCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEe
Q psy15213 23 KNKYFDRILADLPCTGSGVVRRN-------PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 84 (139)
Q Consensus 23 ~~~~fD~ILlDaPCSg~G~~~r~-------p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYs 84 (139)
....||.|+.+||+.+.+.+..- |...+.-.. .-....++++.+|.++|+|||.+++-
T Consensus 198 ~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~----dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 198 PGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGD----DGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred CCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCC----chHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 34579999999999987664321 221111111 12357788999999999999999873
No 27
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=96.42 E-value=0.0065 Score=41.37 Aligned_cols=54 Identities=26% Similarity=0.411 Sum_probs=36.3
Q ss_pred cCcc-ccccCCCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEecc
Q psy15213 15 TNNR-FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86 (139)
Q Consensus 15 ~~~~-~~~~~~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTC 86 (139)
..|. ..+.....||.|+++. -+.. .... . ..++++|+++.+.|+|||+++.++|
T Consensus 58 ~~d~~~~~~~~~~~D~v~~~~-~~~~-----------~~~~-----~-~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 58 QGDAEFDPDFLEPFDLVICSG-FTLH-----------FLLP-----L-DERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp ESCCHGGTTTSSCEEEEEECS-GSGG-----------GCCH-----H-HHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred ECccccCcccCCCCCEEEECC-Cccc-----------cccc-----h-hHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 3444 3444456799999987 2111 1111 1 5667889999999999999999998
No 28
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=96.41 E-value=0.017 Score=46.56 Aligned_cols=57 Identities=21% Similarity=0.265 Sum_probs=36.1
Q ss_pred CCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCCccccHHHHHHH
Q psy15213 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIF 100 (139)
Q Consensus 24 ~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~ 100 (139)
.+.||.|++|++-. .+. ...+ ...+.++.+.+.|+|||.++..+++.. -+...+..+
T Consensus 143 ~~~yDvIi~D~~~~-~~~------------~~~l-----~~~ef~~~~~~~L~pgG~lv~~~~~~~--~~~~~~~~~ 199 (270)
T TIGR00417 143 ENTFDVIIVDSTDP-VGP------------AETL-----FTKEFYELLKKALNEDGIFVAQSESPW--IQLELITDL 199 (270)
T ss_pred CCCccEEEEeCCCC-CCc------------ccch-----hHHHHHHHHHHHhCCCcEEEEcCCCcc--cCHHHHHHH
Confidence 36899999998711 110 0111 225777888899999999999876543 334444443
No 29
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=96.38 E-value=0.029 Score=42.38 Aligned_cols=65 Identities=18% Similarity=0.171 Sum_probs=41.2
Q ss_pred CCCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCCccccHHHHHHH
Q psy15213 23 KNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIF 100 (139)
Q Consensus 23 ~~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~ 100 (139)
..+.||.|+.|+++...|.. +...... ...+.++|..+.++|+|||+++... +.+++-++++..+
T Consensus 95 ~~~~~D~V~~~~~~~~~g~~----------~~~~~~~-~~~~~~~l~~~~~~LkpgG~lvi~~--~~~~~~~~~l~~l 159 (188)
T TIGR00438 95 GDDKVDVVMSDAAPNISGYW----------DIDHLRS-IDLVELALDIAKEVLKPKGNFVVKV--FQGEEIDEYLNEL 159 (188)
T ss_pred CCCCccEEEcCCCCCCCCCc----------cccHHHH-HHHHHHHHHHHHHHccCCCEEEEEE--ccCccHHHHHHHH
Confidence 34679999999764433331 1122222 2357889999999999999998853 3343334554443
No 30
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=96.01 E-value=0.011 Score=50.02 Aligned_cols=51 Identities=27% Similarity=0.410 Sum_probs=38.8
Q ss_pred CCCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEecc
Q psy15213 23 KNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86 (139)
Q Consensus 23 ~~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTC 86 (139)
.+..||.|+.|||..-+ +......+.++..+.|..+...||+||++||.+=
T Consensus 261 ~~~~vdaIatDPPYGrs-------------t~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 261 RDNSVDAIATDPPYGRS-------------TKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCCccceEEecCCCCcc-------------cccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 33479999999994322 1122233888999999999999999999999665
No 31
>PRK00811 spermidine synthase; Provisional
Probab=95.96 E-value=0.031 Score=45.56 Aligned_cols=68 Identities=16% Similarity=0.230 Sum_probs=39.9
Q ss_pred cCccccccC--CCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCCccc
Q psy15213 15 TNNRFRFYK--NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEE 92 (139)
Q Consensus 15 ~~~~~~~~~--~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~E 92 (139)
..|...|.. .++||.|++|++ +|. . ....+ ...+.++.+.+.|+|||.+|.-+-+ +..
T Consensus 137 ~~Da~~~l~~~~~~yDvIi~D~~---------dp~---~-~~~~l-----~t~ef~~~~~~~L~~gGvlv~~~~~--~~~ 196 (283)
T PRK00811 137 IGDGIKFVAETENSFDVIIVDST---------DPV---G-PAEGL-----FTKEFYENCKRALKEDGIFVAQSGS--PFY 196 (283)
T ss_pred ECchHHHHhhCCCcccEEEECCC---------CCC---C-chhhh-----hHHHHHHHHHHhcCCCcEEEEeCCC--ccc
Confidence 344444532 468999999975 111 1 01111 3467788888999999998874333 333
Q ss_pred cHHHHHHHHh
Q psy15213 93 SEEQAIIFSK 102 (139)
Q Consensus 93 NE~vV~~~l~ 102 (139)
+.+.+..+.+
T Consensus 197 ~~~~~~~i~~ 206 (283)
T PRK00811 197 QADEIKDMHR 206 (283)
T ss_pred CHHHHHHHHH
Confidence 3444444443
No 32
>KOG2671|consensus
Probab=95.94 E-value=0.0075 Score=51.46 Aligned_cols=89 Identities=20% Similarity=0.157 Sum_probs=61.8
Q ss_pred cccccCCCCcCEEEEcCCCC---CccccccCCCCCc-----c---CCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEecc
Q psy15213 18 RFRFYKNKYFDRILADLPCT---GSGVVRRNPDIPW-----L---RRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86 (139)
Q Consensus 18 ~~~~~~~~~fD~ILlDaPCS---g~G~~~r~p~~~~-----~---~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTC 86 (139)
...|+.+..||.|++|||.. |.....++-..+. + -.....-.+...--++|.-+.+.|.-||+||+
T Consensus 276 n~~~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~--- 352 (421)
T KOG2671|consen 276 NPPLRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVF--- 352 (421)
T ss_pred CcchhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEE---
Confidence 34677889999999999975 2211211111110 0 01233456677778899999999999999999
Q ss_pred CCCccccHHHHHHHHhhCCCcEEe
Q psy15213 87 SLWFEESEEQAIIFSKNHKDSIRL 110 (139)
Q Consensus 87 S~~~~ENE~vV~~~l~~~~~~~~~ 110 (139)
+.|--+|+..+..+..|+.+.+.
T Consensus 353 -w~p~~~e~~~~~~~P~h~~lsl~ 375 (421)
T KOG2671|consen 353 -WLPTITEEYGEDDIPSHPYLSLI 375 (421)
T ss_pred -ecCchhhccCcccCCCCcchhhh
Confidence 88888888888888888776543
No 33
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=95.91 E-value=0.0072 Score=45.33 Aligned_cols=50 Identities=24% Similarity=0.360 Sum_probs=32.3
Q ss_pred ccCCCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccC
Q psy15213 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 87 (139)
Q Consensus 21 ~~~~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS 87 (139)
.....+||.|+..||.. . .. ..-...+++++..|.++|+|||.++...-+
T Consensus 93 ~~~~~~fD~Iv~NPP~~-------------~-~~---~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~ 142 (170)
T PF05175_consen 93 ALPDGKFDLIVSNPPFH-------------A-GG---DDGLDLLRDFIEQARRYLKPGGRLFLVINS 142 (170)
T ss_dssp TCCTTCEEEEEE---SB-------------T-TS---HCHHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred cccccceeEEEEccchh-------------c-cc---ccchhhHHHHHHHHHHhccCCCEEEEEeec
Confidence 33457999999999911 1 11 123456788999999999999998654433
No 34
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=95.79 E-value=0.034 Score=45.04 Aligned_cols=63 Identities=16% Similarity=0.158 Sum_probs=40.8
Q ss_pred CCcCEEEEcCCCCCccccccCCCCCccCCHhHH---HHHHHHHHHHHHHHHhcccCCcEEEEeccC
Q psy15213 25 KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDI---KKLSKYSCKILNNLWKMLKPGGKLLFVTCS 87 (139)
Q Consensus 25 ~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~---~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS 87 (139)
..||.|+.+||.-....+...++.........+ ..--..+++++.+|.++|+|||.+++-++.
T Consensus 181 ~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~ 246 (284)
T TIGR00536 181 QKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN 246 (284)
T ss_pred CCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc
Confidence 479999999998766543322322110000000 112347889999999999999999987664
No 35
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=95.71 E-value=0.17 Score=38.42 Aligned_cols=96 Identities=17% Similarity=0.204 Sum_probs=67.2
Q ss_pred ccCcccccc--CCCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCCcc
Q psy15213 14 KTNNRFRFY--KNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFE 91 (139)
Q Consensus 14 ~~~~~~~~~--~~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~ 91 (139)
|+.+...+. ....||+|+.-=|+.|.|. ......++....+-...+.+|.++|+++|.+.-+-|.-.|-
T Consensus 61 Dat~l~~~~~~~~~~FDrIiFNFPH~G~~~---------~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py 131 (166)
T PF10354_consen 61 DATKLHKHFRLKNQRFDRIIFNFPHVGGGS---------EDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPY 131 (166)
T ss_pred CCCcccccccccCCcCCEEEEeCCCCCCCc---------cchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCC
Confidence 344444444 5678999999999998433 23346677777888899999999999999999999999885
Q ss_pred ccHHHHHHHHhhCCCcEEe---cCCCcccCCC
Q psy15213 92 ESEEQAIIFSKNHKDSIRL---NSPGQLLPTV 120 (139)
Q Consensus 92 ENE~vV~~~l~~~~~~~~~---~~~~~~~P~~ 120 (139)
+.=.|..+-++. ++.+. +.....||+.
T Consensus 132 -~~W~i~~lA~~~-gl~l~~~~~F~~~~ypgY 161 (166)
T PF10354_consen 132 -DSWNIEELAAEA-GLVLVRKVPFDPSDYPGY 161 (166)
T ss_pred -ccccHHHHHHhc-CCEEEEEecCCHHHCCCc
Confidence 444555554443 55443 3334566654
No 36
>PRK14968 putative methyltransferase; Provisional
Probab=95.52 E-value=0.023 Score=42.05 Aligned_cols=77 Identities=22% Similarity=0.234 Sum_probs=44.1
Q ss_pred CCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCCccccHHHHHHHHhh
Q psy15213 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKN 103 (139)
Q Consensus 24 ~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~l~~ 103 (139)
...||.|+.++|+...+......+ .+......-..-......++.++.++|||||.+++..+++.. ++. +..++++
T Consensus 88 ~~~~d~vi~n~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~--~~~-l~~~~~~ 163 (188)
T PRK14968 88 GDKFDVILFNPPYLPTEEEEEWDD-WLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTG--EDE-VLEYLEK 163 (188)
T ss_pred ccCceEEEECCCcCCCCchhhhhh-hhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCC--HHH-HHHHHHH
Confidence 347999999999765432211000 000000000001234568899999999999999988777643 233 4455555
Q ss_pred C
Q psy15213 104 H 104 (139)
Q Consensus 104 ~ 104 (139)
.
T Consensus 164 ~ 164 (188)
T PRK14968 164 L 164 (188)
T ss_pred C
Confidence 4
No 37
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=95.39 E-value=0.034 Score=35.44 Aligned_cols=40 Identities=30% Similarity=0.550 Sum_probs=33.3
Q ss_pred CCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEe
Q psy15213 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 84 (139)
Q Consensus 24 ~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYs 84 (139)
...||.|+++.+|... ...+..++..+.+.+++||.++++
T Consensus 64 ~~~~d~i~~~~~~~~~---------------------~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 64 DESFDVIISDPPLHHL---------------------VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred CCceEEEEEccceeeh---------------------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 4679999999996654 456788899999999999999886
No 38
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=95.37 E-value=0.23 Score=38.64 Aligned_cols=88 Identities=15% Similarity=0.262 Sum_probs=48.3
Q ss_pred CCCcCEEEEcC-C-CCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCCccccHHHHHHHH
Q psy15213 24 NKYFDRILADL-P-CTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFS 101 (139)
Q Consensus 24 ~~~fD~ILlDa-P-CSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~l 101 (139)
...||.|+.|+ | ++|. | . .+..........+|..+.++|||||.++..+ ...+....+.+.+
T Consensus 115 ~~~~D~V~S~~~~~~~g~------~------~-~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~---~~~~~~~~~l~~l 178 (209)
T PRK11188 115 DSKVQVVMSDMAPNMSGT------P------A-VDIPRAMYLVELALDMCRDVLAPGGSFVVKV---FQGEGFDEYLREI 178 (209)
T ss_pred CCCCCEEecCCCCccCCC------h------H-HHHHHHHHHHHHHHHHHHHHcCCCCEEEEEE---ecCcCHHHHHHHH
Confidence 36799999985 4 2121 0 0 1222222234679999999999999998853 3334433333444
Q ss_pred h-hCCCcEEecCCCcccCCCCCCCCCCcEEEEE
Q psy15213 102 K-NHKDSIRLNSPGQLLPTVNKKQDYDGFFYSL 133 (139)
Q Consensus 102 ~-~~~~~~~~~~~~~~~P~~~~~~~~~GfFia~ 133 (139)
. .+..++... |-.......+.||+|+
T Consensus 179 ~~~f~~v~~~K------p~ssr~~s~e~~~~~~ 205 (209)
T PRK11188 179 RSLFTKVKVRK------PDSSRARSREVYIVAT 205 (209)
T ss_pred HhCceEEEEEC------CccccccCceeEEEee
Confidence 3 333333332 2111124467888875
No 39
>PRK01581 speE spermidine synthase; Validated
Probab=95.12 E-value=0.04 Score=47.21 Aligned_cols=60 Identities=13% Similarity=0.275 Sum_probs=37.3
Q ss_pred CCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCCccccHHHHHHHHh
Q psy15213 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSK 102 (139)
Q Consensus 24 ~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~l~ 102 (139)
.++||.|++|.| +|... .. -.-...+.+..+.+.|+|||++|.-.- +|.....++..+.+
T Consensus 224 ~~~YDVIIvDl~---------DP~~~------~~--~~LyT~EFy~~~~~~LkPgGV~V~Qs~--sp~~~~~~~~~i~~ 283 (374)
T PRK01581 224 SSLYDVIIIDFP---------DPATE------LL--STLYTSELFARIATFLTEDGAFVCQSN--SPADAPLVYWSIGN 283 (374)
T ss_pred CCCccEEEEcCC---------Ccccc------ch--hhhhHHHHHHHHHHhcCCCcEEEEecC--ChhhhHHHHHHHHH
Confidence 468999999987 22110 01 112236788888999999999877643 34455555444433
No 40
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=95.00 E-value=0.037 Score=46.54 Aligned_cols=52 Identities=17% Similarity=0.230 Sum_probs=38.3
Q ss_pred CCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCCccc
Q psy15213 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEE 92 (139)
Q Consensus 24 ~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~E 92 (139)
.+.||.|+.+||= .... ......-.+++.+|.+.|||||.++..++++.|.+
T Consensus 259 ~~~fDlIvsNPPF--------------H~g~---~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~ 310 (342)
T PRK09489 259 KGRFDMIISNPPF--------------HDGI---QTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYP 310 (342)
T ss_pred CCCccEEEECCCc--------------cCCc---cccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChH
Confidence 4689999999991 1000 00012336789999999999999999999998865
No 41
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=95.00 E-value=0.061 Score=40.93 Aligned_cols=52 Identities=29% Similarity=0.376 Sum_probs=37.1
Q ss_pred CCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCCccccHHHHHHHH
Q psy15213 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFS 101 (139)
Q Consensus 24 ~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~l 101 (139)
...||+|++||| + .+.+= +.+....+-.++|+++.++. ..++++|+.+.+.+
T Consensus 84 ~~~~d~vv~DPP--------------F-l~~ec-------~~k~a~ti~~L~k~~~kii~----~Tg~~~~~~~~~ll 135 (162)
T PF10237_consen 84 KGKFDVVVIDPP--------------F-LSEEC-------LTKTAETIRLLLKPGGKIIL----CTGEEMEELIKKLL 135 (162)
T ss_pred CCCceEEEECCC--------------C-CCHHH-------HHHHHHHHHHHhCccceEEE----ecHHHHHHHHHHHh
Confidence 469999999999 2 33322 23334444445577899998 45889999999999
No 42
>PRK11524 putative methyltransferase; Provisional
Probab=94.98 E-value=0.064 Score=43.55 Aligned_cols=60 Identities=15% Similarity=0.154 Sum_probs=37.4
Q ss_pred cCCCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCC
Q psy15213 22 YKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSL 88 (139)
Q Consensus 22 ~~~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~ 88 (139)
.+.+.||.|+.|||--...... +..-. +. ..+......+.|..+.++||+||.++.. |+.
T Consensus 23 l~~~siDlIitDPPY~~~~~~~-~~~~~--~~---~~~~~~~l~~~l~~~~rvLK~~G~i~i~-~~~ 82 (284)
T PRK11524 23 IPSESVDLIFADPPYNIGKNFD-GLIEA--WK---EDLFIDWLYEWIDECHRVLKKQGTMYIM-NST 82 (284)
T ss_pred cccCcccEEEECCCcccccccc-ccccc--cc---HHHHHHHHHHHHHHHHHHhCCCcEEEEE-cCc
Confidence 4457899999999974211110 11101 11 2233444578999999999999998764 443
No 43
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=94.92 E-value=0.06 Score=46.37 Aligned_cols=65 Identities=18% Similarity=0.372 Sum_probs=36.0
Q ss_pred CCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCCccccHHHHHHHHhhC
Q psy15213 25 KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH 104 (139)
Q Consensus 25 ~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~l~~~ 104 (139)
..||.|++|||++|.+ +++. ++..++|+ .+||.+|. |.-=-.-+..+.+.
T Consensus 366 ~~fD~Vi~dPPr~g~~-------------------------~~~~-~l~~~~~~-~ivyvSCn--p~tlaRDl~~L~~~- 415 (443)
T PRK13168 366 GGFDKVLLDPPRAGAA-------------------------EVMQ-ALAKLGPK-RIVYVSCN--PATLARDAGVLVEA- 415 (443)
T ss_pred CCCCEEEECcCCcChH-------------------------HHHH-HHHhcCCC-eEEEEEeC--hHHhhccHHHHhhC-
Confidence 5799999999965531 1121 11124664 78999994 43222223333332
Q ss_pred CCcEEecC-CCcccCCC
Q psy15213 105 KDSIRLNS-PGQLLPTV 120 (139)
Q Consensus 105 ~~~~~~~~-~~~~~P~~ 120 (139)
++++..+ +..+||++
T Consensus 416 -gY~l~~i~~~DmFP~T 431 (443)
T PRK13168 416 -GYRLKRAGMLDMFPHT 431 (443)
T ss_pred -CcEEEEEEEeccCCCC
Confidence 3444332 35789987
No 44
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=94.71 E-value=0.03 Score=45.51 Aligned_cols=106 Identities=18% Similarity=0.237 Sum_probs=51.1
Q ss_pred CCCcCEEEEcCCCCCcccccc--CCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccC--CCccccHHHH-H
Q psy15213 24 NKYFDRILADLPCTGSGVVRR--NPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS--LWFEESEEQA-I 98 (139)
Q Consensus 24 ~~~fD~ILlDaPCSg~G~~~r--~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS--~~~~ENE~vV-~ 98 (139)
...||.||..||-+..+.... ..+.+|... ...-...+...+.+++++|++||++++.+=+ +.....+..+ +
T Consensus 123 ~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~~~~~iR~ 199 (311)
T PF02384_consen 123 NQKFDVIIGNPPFGSKEWKDEELEKDERFKKY---FPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSSSSEKKIRK 199 (311)
T ss_dssp T--EEEEEEE--CTCES-STGGGCTTCCCTTC---SSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGSTHHHHHHH
T ss_pred ccccccccCCCCcccccccccccccccccccc---CCCccchhhhhHHHHHhhcccccceeEEecchhhhccchHHHHHH
Confidence 468999999999887733111 111123211 0001122233788999999999997775543 2222224445 5
Q ss_pred HHHhhCCCcEEecCCCcccCCCCCCCCCCcEEEEEEEec
Q psy15213 99 IFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137 (139)
Q Consensus 99 ~~l~~~~~~~~~~~~~~~~P~~~~~~~~~GfFia~l~k~ 137 (139)
++++++--..++.+|..+|+.. .-...|-+|+|.
T Consensus 200 ~ll~~~~i~aVI~Lp~~~F~~t-----~v~t~ilil~k~ 233 (311)
T PF02384_consen 200 YLLENGYIEAVISLPSNLFKPT-----GVPTSILILNKK 233 (311)
T ss_dssp HHHHHEEEEEEEE--TTSSSSS-----SS-EEEEEEEES
T ss_pred HHHhhchhhEEeecccceeccc-----CcCceEEEEeec
Confidence 5666542112445565666643 233455555554
No 45
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=94.46 E-value=0.087 Score=44.30 Aligned_cols=49 Identities=14% Similarity=0.310 Sum_probs=25.8
Q ss_pred cEEEEeccCCCccccHHHHHHHHhhCCCcEEecC-CCcccCCCCCCCCCCcEEEEEEEec
Q psy15213 79 GKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS-PGQLLPTVNKKQDYDGFFYSLFQKR 137 (139)
Q Consensus 79 G~lvYsTCS~~~~ENE~vV~~~l~~~~~~~~~~~-~~~~~P~~~~~~~~~GfFia~l~k~ 137 (139)
.+|||.+|.-..- -.-+.. |.+ ++++..+ +..+||++ +-.+- +++|+|+
T Consensus 303 ~~ivYvSCnP~tl--aRDl~~-L~~--~y~~~~v~~~DmFP~T---~HvE~--v~lL~rk 352 (352)
T PF05958_consen 303 KRIVYVSCNPATL--ARDLKI-LKE--GYKLEKVQPVDMFPQT---HHVET--VALLERK 352 (352)
T ss_dssp SEEEEEES-HHHH--HHHHHH-HHC--CEEEEEEEEE-SSTTS---S--EE--EEEEEE-
T ss_pred CeEEEEECCHHHH--HHHHHH-Hhh--cCEEEEEEEeecCCCC---CcEEE--EEEEEeC
Confidence 4999999975432 222223 332 4554432 35789988 55555 7777764
No 46
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=94.45 E-value=0.11 Score=38.93 Aligned_cols=70 Identities=20% Similarity=0.208 Sum_probs=38.3
Q ss_pred CCcCEEEEcC--CCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCCccccHHHHHHHHh
Q psy15213 25 KYFDRILADL--PCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSK 102 (139)
Q Consensus 25 ~~fD~ILlDa--PCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~l~ 102 (139)
+.||.|+.|. +|+|... .+ -....++....|.-|+++|++||.+|--+-. ..+.++++..+-.
T Consensus 90 ~~~dlv~~D~~~~~~g~~~----------~d---~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~--~~~~~~~~~~l~~ 154 (181)
T PF01728_consen 90 EKFDLVLSDMAPNVSGDRN----------ID---EFISIRLILSQLLLALELLKPGGTFVIKVFK--GPEIEELIYLLKR 154 (181)
T ss_dssp CSESEEEE-------SSHH----------SS---HHHHHHHHHHHHHHHHHHHCTTEEEEEEESS--STTSHHHHHHHHH
T ss_pred cCcceeccccccCCCCchh----------hH---HHHHHHHHHHHHHHHHhhhcCCCEEEEEecc--CccHHHHHHHHHh
Confidence 6899999998 5555411 12 2233355555577888899999987764433 2233455555555
Q ss_pred hCCCcEE
Q psy15213 103 NHKDSIR 109 (139)
Q Consensus 103 ~~~~~~~ 109 (139)
.+..+..
T Consensus 155 ~F~~v~~ 161 (181)
T PF01728_consen 155 CFSKVKI 161 (181)
T ss_dssp HHHHEEE
T ss_pred CCeEEEE
Confidence 4433333
No 47
>PLN02366 spermidine synthase
Probab=94.38 E-value=0.22 Score=41.42 Aligned_cols=55 Identities=20% Similarity=0.377 Sum_probs=34.1
Q ss_pred cccccCccccccC---CCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEE
Q psy15213 11 INKKTNNRFRFYK---NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83 (139)
Q Consensus 11 ~~~~~~~~~~~~~---~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvY 83 (139)
++-.-.|...|.. ++.||.|++|.+- |. . .... -...+.++.+.+.|+|||.++.
T Consensus 147 v~vi~~Da~~~l~~~~~~~yDvIi~D~~d---------p~---~-~~~~-----L~t~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 147 VNLHIGDGVEFLKNAPEGTYDAIIVDSSD---------PV---G-PAQE-----LFEKPFFESVARALRPGGVVCT 204 (308)
T ss_pred eEEEEChHHHHHhhccCCCCCEEEEcCCC---------CC---C-chhh-----hhHHHHHHHHHHhcCCCcEEEE
Confidence 3333345544432 4589999999871 11 0 0011 1347778888999999999865
No 48
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=94.27 E-value=0.12 Score=44.09 Aligned_cols=66 Identities=21% Similarity=0.350 Sum_probs=36.6
Q ss_pred CCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCCccccHHHHHHHHhhC
Q psy15213 25 KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH 104 (139)
Q Consensus 25 ~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~l~~~ 104 (139)
..||.|++|||.+|.. .+++.. +..++|+ .+||.+|. |.-=..-++.+.+.
T Consensus 361 ~~~D~vi~dPPr~G~~------------------------~~~l~~-l~~l~~~-~ivyvsc~--p~tlard~~~l~~~- 411 (431)
T TIGR00479 361 QIPDVLLLDPPRKGCA------------------------AEVLRT-IIELKPE-RIVYVSCN--PATLARDLEFLCKE- 411 (431)
T ss_pred CCCCEEEECcCCCCCC------------------------HHHHHH-HHhcCCC-EEEEEcCC--HHHHHHHHHHHHHC-
Confidence 4699999999965431 222222 2225775 68999997 33222233333333
Q ss_pred CCcEEecC-CCcccCCC
Q psy15213 105 KDSIRLNS-PGQLLPTV 120 (139)
Q Consensus 105 ~~~~~~~~-~~~~~P~~ 120 (139)
++++..+ +..+||++
T Consensus 412 -gy~~~~~~~~DmFP~T 427 (431)
T TIGR00479 412 -GYGITWVQPVDMFPHT 427 (431)
T ss_pred -CeeEEEEEEeccCCCC
Confidence 3433322 35789987
No 49
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=93.82 E-value=0.15 Score=38.91 Aligned_cols=69 Identities=16% Similarity=0.173 Sum_probs=40.0
Q ss_pred HHHHHHHHhcccCCcEEEEeccCCCccccHHHHHHHHhhCC-CcEEecCC-Ccc--cCCCCCCCCCCcEEEEEEEe
Q psy15213 65 CKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK-DSIRLNSP-GQL--LPTVNKKQDYDGFFYSLFQK 136 (139)
Q Consensus 65 ~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~l~~~~-~~~~~~~~-~~~--~P~~~~~~~~~GfFia~l~k 136 (139)
.+++..+.++|+|||++++.+|++ ++.+.+...|+++. ..+...+- .+. ++....-...+|-|+-..+|
T Consensus 125 ~~~l~~~~~~LkpgG~lv~~~~~~---~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~npv~~~~~~~ 197 (198)
T PRK00377 125 KEIISASWEIIKKGGRIVIDAILL---ETVNNALSALENIGFNLEITEVIIAKGMKTKVGTAMMTRNPIFIISGEK 197 (198)
T ss_pred HHHHHHHHHHcCCCcEEEEEeecH---HHHHHHHHHHHHcCCCeEEEEEehhhcccccCCcEeecCCCEEEEEEec
Confidence 567889999999999999988865 34455566665542 22322211 111 11111112347888877655
No 50
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=93.79 E-value=0.1 Score=42.91 Aligned_cols=64 Identities=17% Similarity=0.306 Sum_probs=36.9
Q ss_pred CCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCCccccHHHHHHHHhhC
Q psy15213 25 KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH 104 (139)
Q Consensus 25 ~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~l~~~ 104 (139)
..||.|++|||++|.+. .+ .++| ..++|+ .|||++|.-.---.+ ++.+
T Consensus 239 ~~~D~Vv~dPPr~G~~~--------------~~-------~~~l----~~~~~~-~ivyvsc~p~t~~rd--~~~l---- 286 (315)
T PRK03522 239 EVPDLVLVNPPRRGIGK--------------EL-------CDYL----SQMAPR-FILYSSCNAQTMAKD--LAHL---- 286 (315)
T ss_pred CCCeEEEECCCCCCccH--------------HH-------HHHH----HHcCCC-eEEEEECCcccchhH--Hhhc----
Confidence 46999999999665421 11 1111 123454 899999987653322 1222
Q ss_pred CCcEEecC-CCcccCCC
Q psy15213 105 KDSIRLNS-PGQLLPTV 120 (139)
Q Consensus 105 ~~~~~~~~-~~~~~P~~ 120 (139)
+++++..+ +..+||++
T Consensus 287 ~~y~~~~~~~~DmFP~T 303 (315)
T PRK03522 287 PGYRIERVQLFDMFPHT 303 (315)
T ss_pred cCcEEEEEEEeccCCCC
Confidence 45554433 35789987
No 51
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=93.69 E-value=0.15 Score=41.46 Aligned_cols=76 Identities=25% Similarity=0.362 Sum_probs=50.0
Q ss_pred CccccccC---CCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHH-----HHHHHHHHHhcccCCcEEEEeccC
Q psy15213 16 NNRFRFYK---NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKY-----SCKILNNLWKMLKPGGKLLFVTCS 87 (139)
Q Consensus 16 ~~~~~~~~---~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~-----Q~~lL~~a~~~lk~gG~lvYsTCS 87 (139)
.|...|.. ...||.|++-||.--.|.- + ++...+..++. -.++++.|.++||+||++.+
T Consensus 102 ~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~-~--------~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~---- 168 (248)
T COG4123 102 ADIKEFLKALVFASFDLIICNPPYFKQGSR-L--------NENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF---- 168 (248)
T ss_pred hhHHHhhhcccccccCEEEeCCCCCCCccc-c--------CcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE----
Confidence 34444433 3469999999997766654 1 22233333333 35678999999999999988
Q ss_pred CCccccHHHHHHHHhhC
Q psy15213 88 LWFEESEEQAIIFSKNH 104 (139)
Q Consensus 88 ~~~~ENE~vV~~~l~~~ 104 (139)
+++.|.=.-+-..+..+
T Consensus 169 V~r~erl~ei~~~l~~~ 185 (248)
T COG4123 169 VHRPERLAEIIELLKSY 185 (248)
T ss_pred EecHHHHHHHHHHHHhc
Confidence 77766665555556553
No 52
>PRK03612 spermidine synthase; Provisional
Probab=93.38 E-value=0.14 Score=45.21 Aligned_cols=57 Identities=30% Similarity=0.533 Sum_probs=35.9
Q ss_pred CccccccC--CCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCC
Q psy15213 16 NNRFRFYK--NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLW 89 (139)
Q Consensus 16 ~~~~~~~~--~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~ 89 (139)
.|...|.. .++||.|++|+|- |... ...+ -...+.++.+.+.|+|||.++..++|..
T Consensus 361 ~Da~~~l~~~~~~fDvIi~D~~~---------~~~~---~~~~-----L~t~ef~~~~~~~L~pgG~lv~~~~~~~ 419 (521)
T PRK03612 361 DDAFNWLRKLAEKFDVIIVDLPD---------PSNP---ALGK-----LYSVEFYRLLKRRLAPDGLLVVQSTSPY 419 (521)
T ss_pred ChHHHHHHhCCCCCCEEEEeCCC---------CCCc---chhc-----cchHHHHHHHHHhcCCCeEEEEecCCcc
Confidence 34444432 4689999999872 1100 0001 1226778888899999999998776543
No 53
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=93.34 E-value=0.15 Score=39.33 Aligned_cols=35 Identities=29% Similarity=0.272 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhcccCCcEEEEeccCCCccccHHHHHHHHhh
Q psy15213 63 YSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKN 103 (139)
Q Consensus 63 ~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~l~~ 103 (139)
.+..+|.++.++|||||+++++|+ ++..+.++++.
T Consensus 134 ~~~~~l~~i~~~LkpgG~l~i~~~------~~~~~~~~~~~ 168 (202)
T PRK00121 134 VQPEFLALYARKLKPGGEIHFATD------WEGYAEYMLEV 168 (202)
T ss_pred CCHHHHHHHHHHcCCCCEEEEEcC------CHHHHHHHHHH
Confidence 367889999999999999999775 55555555543
No 54
>PRK04266 fibrillarin; Provisional
Probab=93.02 E-value=0.86 Score=36.10 Aligned_cols=65 Identities=20% Similarity=0.053 Sum_probs=35.4
Q ss_pred HHHHHHHHhcccCCcEEEEeccC------CCccccHHHHHHHHhhCCCcEEecCCCcccCCCCCCCCCCcEEEEEEEec
Q psy15213 65 CKILNNLWKMLKPGGKLLFVTCS------LWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137 (139)
Q Consensus 65 ~~lL~~a~~~lk~gG~lvYsTCS------~~~~ENE~vV~~~l~~~~~~~~~~~~~~~~P~~~~~~~~~GfFia~l~k~ 137 (139)
..+|.++.++|||||.++.+... ..+.+--+.....++.. +++.+... .+.| -..+.|..+++++
T Consensus 156 ~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~a-GF~~i~~~-~l~p------~~~~h~~~v~~~~ 226 (226)
T PRK04266 156 EIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEG-GFEILEVV-DLEP------YHKDHAAVVARKK 226 (226)
T ss_pred HHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHc-CCeEEEEE-cCCC------CcCCeEEEEEEcC
Confidence 34678999999999999884322 22211111122444443 45544321 1233 2357888888763
No 55
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=92.74 E-value=0.34 Score=36.95 Aligned_cols=68 Identities=16% Similarity=0.165 Sum_probs=40.7
Q ss_pred CCCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCCccccHHHHHHH--
Q psy15213 23 KNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIF-- 100 (139)
Q Consensus 23 ~~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~-- 100 (139)
....+|.|+++.| +|..+....+.+ -.+.+++..+.+.|||||.+..+| .++...+++
T Consensus 84 ~~~~~d~v~~~~p---------dpw~k~~h~~~r-----~~~~~~l~~~~r~LkpgG~l~~~t------d~~~~~~~~~~ 143 (194)
T TIGR00091 84 PDGSLSKVFLNFP---------DPWPKKRHNKRR-----ITQPHFLKEYANVLKKGGVIHFKT------DNEPLFEDMLK 143 (194)
T ss_pred CCCceeEEEEECC---------CcCCCCCccccc-----cCCHHHHHHHHHHhCCCCEEEEEe------CCHHHHHHHHH
Confidence 3458999999977 222111100111 125788999999999999998876 344444443
Q ss_pred -HhhCCCcEEe
Q psy15213 101 -SKNHKDSIRL 110 (139)
Q Consensus 101 -l~~~~~~~~~ 110 (139)
+..++.++..
T Consensus 144 ~~~~~~~f~~~ 154 (194)
T TIGR00091 144 VLSENDLFENT 154 (194)
T ss_pred HHHhCCCeEec
Confidence 3445555544
No 56
>PLN02476 O-methyltransferase
Probab=92.68 E-value=0.23 Score=40.87 Aligned_cols=40 Identities=13% Similarity=0.237 Sum_probs=31.3
Q ss_pred CCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCC
Q psy15213 25 KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLW 89 (139)
Q Consensus 25 ~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~ 89 (139)
..||.|++|++ + ....+.+..++++|++||.||.=..-++
T Consensus 193 ~~FD~VFIDa~-------------K------------~~Y~~y~e~~l~lL~~GGvIV~DNvL~~ 232 (278)
T PLN02476 193 SSYDFAFVDAD-------------K------------RMYQDYFELLLQLVRVGGVIVMDNVLWH 232 (278)
T ss_pred CCCCEEEECCC-------------H------------HHHHHHHHHHHHhcCCCcEEEEecCccC
Confidence 58999999999 1 3456777888899999999998555443
No 57
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=92.40 E-value=0.54 Score=35.72 Aligned_cols=49 Identities=33% Similarity=0.498 Sum_probs=34.7
Q ss_pred CCCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccC
Q psy15213 23 KNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 87 (139)
Q Consensus 23 ~~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS 87 (139)
..+.+|.|+.||| |-.+...-..+.++..+++..+.+.+++ ..|+.|.+
T Consensus 103 ~~~~~d~IvtnPP--------------yG~r~~~~~~~~~ly~~~~~~~~~~l~~--~~v~l~~~ 151 (179)
T PF01170_consen 103 PDGSVDAIVTNPP--------------YGRRLGSKKDLEKLYRQFLRELKRVLKP--RAVFLTTS 151 (179)
T ss_dssp TTSBSCEEEEE----------------STTSHCHHHHHHHHHHHHHHHHHCHSTT--CEEEEEES
T ss_pred ccCCCCEEEECcc--------------hhhhccCHHHHHHHHHHHHHHHHHHCCC--CEEEEEEC
Confidence 3468999999999 4444445566788999999999999988 45554443
No 58
>PLN02823 spermine synthase
Probab=92.32 E-value=0.54 Score=39.59 Aligned_cols=78 Identities=18% Similarity=0.124 Sum_probs=40.5
Q ss_pred CccccccC--CCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHH-HHHhcccCCcEEEEeccCCC---
Q psy15213 16 NNRFRFYK--NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILN-NLWKMLKPGGKLLFVTCSLW--- 89 (139)
Q Consensus 16 ~~~~~~~~--~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~-~a~~~lk~gG~lvYsTCS~~--- 89 (139)
.|...|.. .++||.|++|++ +|... . .... -..++.++ .+.+.|+|||.+|.-.-|..
T Consensus 164 ~Da~~~L~~~~~~yDvIi~D~~---------dp~~~-~-~~~~-----Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~ 227 (336)
T PLN02823 164 NDARAELEKRDEKFDVIIGDLA---------DPVEG-G-PCYQ-----LYTKSFYERIVKPKLNPGGIFVTQAGPAGILT 227 (336)
T ss_pred ChhHHHHhhCCCCccEEEecCC---------Ccccc-C-cchh-----hccHHHHHHHHHHhcCCCcEEEEeccCcchhc
Confidence 34444432 468999999975 11100 0 0000 12345555 56688999999875433322
Q ss_pred -ccccHHHHHHHHhhCCCcEE
Q psy15213 90 -FEESEEQAIIFSKNHKDSIR 109 (139)
Q Consensus 90 -~~ENE~vV~~~l~~~~~~~~ 109 (139)
++....+++.+-+.++....
T Consensus 228 ~~~~~~~i~~tl~~vF~~v~~ 248 (336)
T PLN02823 228 HKEVFSSIYNTLRQVFKYVVP 248 (336)
T ss_pred cHHHHHHHHHHHHHhCCCEEE
Confidence 33334455555555655433
No 59
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=92.30 E-value=0.57 Score=39.60 Aligned_cols=39 Identities=10% Similarity=0.135 Sum_probs=22.0
Q ss_pred ccCCcEEEEeccCCCccccHHHHHHHHhhCCCcEEecC-CCcccCCC
Q psy15213 75 LKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS-PGQLLPTV 120 (139)
Q Consensus 75 lk~gG~lvYsTCS~~~~ENE~vV~~~l~~~~~~~~~~~-~~~~~P~~ 120 (139)
++|+ .+||+.|.- .-..+-+....++++..+ +..+||++
T Consensus 324 ~~p~-~ivyvsc~p------~TlaRDl~~L~gy~l~~~~~~DmFPqT 363 (374)
T TIGR02085 324 MAPK-FILYSSCNA------QTMAKDIAELSGYQIERVQLFDMFPHT 363 (374)
T ss_pred cCCC-eEEEEEeCH------HHHHHHHHHhcCceEEEEEEeccCCCC
Confidence 4675 799999942 333333333334544432 35789987
No 60
>PHA03411 putative methyltransferase; Provisional
Probab=91.97 E-value=0.37 Score=39.81 Aligned_cols=79 Identities=16% Similarity=0.253 Sum_probs=46.7
Q ss_pred ccccccCCCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHH-----------HHHHHHHHHhcccCCcEE--EE
Q psy15213 17 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKY-----------SCKILNNLWKMLKPGGKL--LF 83 (139)
Q Consensus 17 ~~~~~~~~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~-----------Q~~lL~~a~~~lk~gG~l--vY 83 (139)
|...|....+||.|+.+||-..... .+...+... -.+.+..+-.+|+|+|.+ +|
T Consensus 117 D~~e~~~~~kFDlIIsNPPF~~l~~-------------~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~y 183 (279)
T PHA03411 117 DVFEFESNEKFDVVISNPPFGKINT-------------TDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAY 183 (279)
T ss_pred chhhhcccCCCcEEEEcCCccccCc-------------hhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEE
Confidence 4444544568999999999443322 222222333 257788888899999955 35
Q ss_pred eccCC-CccccHHHHHHHHhhCCCcEE
Q psy15213 84 VTCSL-WFEESEEQAIIFSKNHKDSIR 109 (139)
Q Consensus 84 sTCS~-~~~ENE~vV~~~l~~~~~~~~ 109 (139)
|.=-+ +-.-..+-...+|+.+ +++.
T Consensus 184 ss~~~y~~sl~~~~y~~~l~~~-g~~~ 209 (279)
T PHA03411 184 SGRPYYDGTMKSNKYLKWSKQT-GLVT 209 (279)
T ss_pred eccccccccCCHHHHHHHHHhc-CcEe
Confidence 55222 3334445566777765 4443
No 61
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=91.82 E-value=0.43 Score=37.81 Aligned_cols=39 Identities=23% Similarity=0.280 Sum_probs=29.7
Q ss_pred CCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCC
Q psy15213 25 KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSL 88 (139)
Q Consensus 25 ~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~ 88 (139)
+.||.|++|++ + ....+.+..++++++|||.|+.-.+-+
T Consensus 143 ~~fD~VfiDa~-------------k------------~~y~~~~~~~~~ll~~GG~ii~dn~l~ 181 (234)
T PLN02781 143 PEFDFAFVDAD-------------K------------PNYVHFHEQLLKLVKVGGIIAFDNTLW 181 (234)
T ss_pred CCCCEEEECCC-------------H------------HHHHHHHHHHHHhcCCCeEEEEEcCCc
Confidence 58999999998 1 223456788899999999999755443
No 62
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=91.75 E-value=0.69 Score=40.32 Aligned_cols=75 Identities=13% Similarity=0.025 Sum_probs=43.9
Q ss_pred CCcCEEEEcCCCCCccccccCCCCCccCCHhH-H---HHHHHHHHHHHHHHHhcccCCcEEEEeccCCCccccHHHHHHH
Q psy15213 25 KYFDRILADLPCTGSGVVRRNPDIPWLRRKND-I---KKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIF 100 (139)
Q Consensus 25 ~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~-~---~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~ 100 (139)
..||.|+.+||-...+.....++.. ...+.. + .+--...++++..+.+.|+|||.+++-. .. ...+.|..+
T Consensus 318 ~~FDLIVSNPPYI~~~e~~l~~~~v-~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi---G~-~Q~e~V~~l 392 (423)
T PRK14966 318 GKWDIIVSNPPYIENGDKHLLQGDL-RFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH---GF-DQGAAVRGV 392 (423)
T ss_pred CCccEEEECCCCCCcchhhhcchhh-hcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE---Cc-cHHHHHHHH
Confidence 4799999999986655422211111 011110 0 1122457799999999999999987632 22 334455566
Q ss_pred HhhC
Q psy15213 101 SKNH 104 (139)
Q Consensus 101 l~~~ 104 (139)
+++.
T Consensus 393 l~~~ 396 (423)
T PRK14966 393 LAEN 396 (423)
T ss_pred HHHC
Confidence 6554
No 63
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=90.89 E-value=0.46 Score=40.64 Aligned_cols=50 Identities=18% Similarity=0.224 Sum_probs=34.2
Q ss_pred CCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCCc
Q psy15213 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWF 90 (139)
Q Consensus 24 ~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~ 90 (139)
..+||.|+++||.--. . ..+.. .-.+++..|.+.|+|||.+...+-...+
T Consensus 296 ~~~fDlIlsNPPfh~~-~---------~~~~~-------ia~~l~~~a~~~LkpGG~L~iV~nr~l~ 345 (378)
T PRK15001 296 PFRFNAVLCNPPFHQQ-H---------ALTDN-------VAWEMFHHARRCLKINGELYIVANRHLD 345 (378)
T ss_pred CCCEEEEEECcCcccC-c---------cCCHH-------HHHHHHHHHHHhcccCCEEEEEEecCcC
Confidence 4589999999994311 1 01111 2256899999999999999888655443
No 64
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=90.62 E-value=1.3 Score=39.14 Aligned_cols=75 Identities=16% Similarity=0.156 Sum_probs=42.9
Q ss_pred CCCcCEEEEcCCCCCcccccc-CCCCCccCCHhH----HHHHHHHHHHHHHHHHhcccCCcEEEEeccCCCccccHHHHH
Q psy15213 24 NKYFDRILADLPCTGSGVVRR-NPDIPWLRRKND----IKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAI 98 (139)
Q Consensus 24 ~~~fD~ILlDaPCSg~G~~~r-~p~~~~~~~~~~----~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~ 98 (139)
.+.||.|+.+||--....... .+++.- ..+.. -..-....++++.++.++|+|||.++.. +.. ... +.|.
T Consensus 204 ~~~fDlIvsNPPYi~~~~~~~l~~~v~~-~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE-ig~--~q~-~~v~ 278 (506)
T PRK01544 204 KQKFDFIVSNPPYISHSEKSEMAIETIN-YEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE-IGF--KQE-EAVT 278 (506)
T ss_pred CCCccEEEECCCCCCchhhhhcCchhhc-cCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE-ECC--chH-HHHH
Confidence 458999999999776543211 111110 00000 0112346788999999999999999874 333 233 3444
Q ss_pred HHHhh
Q psy15213 99 IFSKN 103 (139)
Q Consensus 99 ~~l~~ 103 (139)
.++.+
T Consensus 279 ~~~~~ 283 (506)
T PRK01544 279 QIFLD 283 (506)
T ss_pred HHHHh
Confidence 44444
No 65
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=90.54 E-value=0.54 Score=38.40 Aligned_cols=45 Identities=22% Similarity=0.428 Sum_probs=32.5
Q ss_pred CccccccCCCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEE-EeccC
Q psy15213 16 NNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLL-FVTCS 87 (139)
Q Consensus 16 ~~~~~~~~~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lv-YsTCS 87 (139)
.|...-...+.||+|+||-| + + .+.|.++.++|+|||.++ |+.|.
T Consensus 153 ~Dv~~~~~~~~vDav~LDmp---------~--------P----------W~~le~~~~~Lkpgg~~~~y~P~v 198 (256)
T COG2519 153 GDVREGIDEEDVDAVFLDLP---------D--------P----------WNVLEHVSDALKPGGVVVVYSPTV 198 (256)
T ss_pred ccccccccccccCEEEEcCC---------C--------h----------HHHHHHHHHHhCCCcEEEEEcCCH
Confidence 45555445569999999999 1 1 456888999999999764 55554
No 66
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=90.50 E-value=0.63 Score=31.64 Aligned_cols=21 Identities=33% Similarity=0.961 Sum_probs=18.4
Q ss_pred HHHHHHHHhcccCCcEEEEec
Q psy15213 65 CKILNNLWKMLKPGGKLLFVT 85 (139)
Q Consensus 65 ~~lL~~a~~~lk~gG~lvYsT 85 (139)
.+++..+.+.|+|||.++.+.
T Consensus 102 ~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 102 QEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred HHHHHHHHHHcCCCCEEEEEe
Confidence 488999999999999998753
No 67
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=90.44 E-value=0.35 Score=36.32 Aligned_cols=72 Identities=14% Similarity=0.102 Sum_probs=40.9
Q ss_pred cCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCCccccHHHHHHHHhh
Q psy15213 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKN 103 (139)
Q Consensus 27 fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~l~~ 103 (139)
.|.|+.|||.-..... .............+......+.+..+.++|||||.++. .|+-....+ ..+..+++.
T Consensus 1 VdliitDPPY~~~~~~---~~~~~~~~~~~~~~y~~~~~~~~~~~~rvLk~~g~~~i-~~~~~~~~~-~~~~~~~~~ 72 (231)
T PF01555_consen 1 VDLIITDPPYNIGKDY---NNYFDYGDNKNHEEYLEWMEEWLKECYRVLKPGGSIFI-FIDDREIAG-FLFELALEI 72 (231)
T ss_dssp EEEEEE---TSSSCS--------CSCHCCHHHHHHHHHHHHHHHHHHHEEEEEEEEE-EE-CCEECT-HHHHHHHHH
T ss_pred CCEEEECCCCCCCCCc---chhhhccCCCCHHHHHHHHHHHHHHHHhhcCCCeeEEE-EecchhhhH-HHHHHHHHH
Confidence 4899999996543221 00000112245677788889999999999999998754 555544433 244445554
No 68
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=90.26 E-value=0.31 Score=40.69 Aligned_cols=50 Identities=24% Similarity=0.324 Sum_probs=36.4
Q ss_pred CCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCCcc
Q psy15213 25 KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFE 91 (139)
Q Consensus 25 ~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~ 91 (139)
++||.|+.-|| +.-. ..-....=.+|+..|...|++||.|-...-...+.
T Consensus 223 ~kfd~IisNPP--------------fh~G---~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y 272 (300)
T COG2813 223 GKFDLIISNPP--------------FHAG---KAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPY 272 (300)
T ss_pred ccccEEEeCCC--------------ccCC---cchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCCh
Confidence 48999999999 2211 11223344689999999999999998877766654
No 69
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=89.87 E-value=0.5 Score=36.50 Aligned_cols=34 Identities=26% Similarity=0.294 Sum_probs=23.8
Q ss_pred CCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEec
Q psy15213 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 85 (139)
Q Consensus 24 ~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsT 85 (139)
...||+|++|+++... .....+.|+|||+++...
T Consensus 144 ~~~fD~Ii~~~~~~~~----------------------------~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 144 LAPYDRIYVTAAGPKI----------------------------PEALIDQLKEGGILVMPV 177 (215)
T ss_pred cCCCCEEEEcCCcccc----------------------------cHHHHHhcCcCcEEEEEE
Confidence 4589999999873221 123456799999999853
No 70
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=89.78 E-value=0.5 Score=41.14 Aligned_cols=19 Identities=21% Similarity=0.441 Sum_probs=14.1
Q ss_pred ccCCCCcCEEEEcCCCCCc
Q psy15213 21 FYKNKYFDRILADLPCTGS 39 (139)
Q Consensus 21 ~~~~~~fD~ILlDaPCSg~ 39 (139)
|+....||.||||||=+|.
T Consensus 357 ~~~~~~~d~VvvDPPR~G~ 375 (432)
T COG2265 357 WWEGYKPDVVVVDPPRAGA 375 (432)
T ss_pred ccccCCCCEEEECCCCCCC
Confidence 4456789999999993333
No 71
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=89.57 E-value=0.43 Score=40.79 Aligned_cols=37 Identities=32% Similarity=0.433 Sum_probs=26.4
Q ss_pred CCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccC
Q psy15213 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 87 (139)
Q Consensus 24 ~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS 87 (139)
...||.|++||| |++ ...|..|+..+++||.| |.||+
T Consensus 123 ~~~fD~V~lDP~--Gs~------------------------~~~l~~al~~~~~~gil-yvSAt 159 (382)
T PRK04338 123 ERKFDVVDIDPF--GSP------------------------APFLDSAIRSVKRGGLL-CVTAT 159 (382)
T ss_pred cCCCCEEEECCC--CCc------------------------HHHHHHHHHHhcCCCEE-EEEec
Confidence 457999999999 331 24678888889987655 55554
No 72
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=89.51 E-value=0.57 Score=38.40 Aligned_cols=45 Identities=29% Similarity=0.564 Sum_probs=29.5
Q ss_pred cCCCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEec
Q psy15213 22 YKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 85 (139)
Q Consensus 22 ~~~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsT 85 (139)
++.+.||.|+=||| +++... +- .-.++-+.-++.|||||+|+--|
T Consensus 201 ~~D~sfDaIiHDPP---------------RfS~Ag-eL---YseefY~El~RiLkrgGrlFHYv 245 (287)
T COG2521 201 FDDESFDAIIHDPP---------------RFSLAG-EL---YSEEFYRELYRILKRGGRLFHYV 245 (287)
T ss_pred CCccccceEeeCCC---------------ccchhh-hH---hHHHHHHHHHHHcCcCCcEEEEe
Confidence 44578999999999 443333 11 22344455567899999997544
No 73
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=89.29 E-value=0.46 Score=37.51 Aligned_cols=99 Identities=18% Similarity=0.295 Sum_probs=50.9
Q ss_pred cccccCccccccCCCCcCEEEEcCCCCCccccccCCCCCccCCH-hHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCC-
Q psy15213 11 INKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRK-NDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSL- 88 (139)
Q Consensus 11 ~~~~~~~~~~~~~~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~-~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~- 88 (139)
+.-...+...|++.+.||.|++ |..+. -+++ +++ +..+.+....|+|||.||..+=.-
T Consensus 91 V~~~~~dvp~~~P~~~FDLIV~----SEVlY---------YL~~~~~L-------~~~l~~l~~~L~pgG~LV~g~~rd~ 150 (201)
T PF05401_consen 91 VEWIQADVPEFWPEGRFDLIVL----SEVLY---------YLDDAEDL-------RAALDRLVAALAPGGHLVFGHARDA 150 (201)
T ss_dssp EEEEES-TTT---SS-EEEEEE----ES-GG---------GSSSHHHH-------HHHHHHHHHTEEEEEEEEEEEE-HH
T ss_pred eEEEECcCCCCCCCCCeeEEEE----ehHhH---------cCCCHHHH-------HHHHHHHHHHhCCCCEEEEEEecCC
Confidence 3344556666778899999996 33333 3332 334 556778888999999999964221
Q ss_pred ----C-ccccHHHHHHHHhhC-CCcEEecCCCcccCCCCCCCCCCcEEEEEEEec
Q psy15213 89 ----W-FEESEEQAIIFSKNH-KDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137 (139)
Q Consensus 89 ----~-~~ENE~vV~~~l~~~-~~~~~~~~~~~~~P~~~~~~~~~GfFia~l~k~ 137 (139)
- -.-..+-|-.+|+++ -.++.+. .-+. ...+..-+|+|+|.
T Consensus 151 ~c~~wgh~~ga~tv~~~~~~~~~~~~~~~-----~~~~---~~~~~~~~~~~~~~ 197 (201)
T PF05401_consen 151 NCRRWGHAAGAETVLEMLQEHLTEVERVE-----CRGG---SPNEDCLLARFRNP 197 (201)
T ss_dssp HHHHTT-S--HHHHHHHHHHHSEEEEEEE-----EE-S---STTSEEEEEEEE--
T ss_pred cccccCcccchHHHHHHHHHHhhheeEEE-----EcCC---CCCCceEeeeecCC
Confidence 0 011334444445443 2222222 1122 45678999999875
No 74
>PRK13699 putative methylase; Provisional
Probab=88.72 E-value=0.65 Score=36.77 Aligned_cols=68 Identities=16% Similarity=0.193 Sum_probs=38.9
Q ss_pred ccCccccccCCCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCC
Q psy15213 14 KTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLW 89 (139)
Q Consensus 14 ~~~~~~~~~~~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~ 89 (139)
|..+.-.-.+.+.+|.|+-|||.- .|.-.+.. + .... ........+.+..+.+.|||||.++ +-|+.+
T Consensus 8 D~le~l~~lpd~SVDLIiTDPPY~-i~~~~~~~--~-~~~~---~~~~ew~~~~l~E~~RVLKpgg~l~-if~~~~ 75 (227)
T PRK13699 8 NCIDVMARFPDNAVDFILTDPPYL-VGFRDRQG--R-TIAG---DKTDEWLQPACNEMYRVLKKDALMV-SFYGWN 75 (227)
T ss_pred hHHHHHHhCCccccceEEeCCCcc-cccccCCC--c-cccc---ccHHHHHHHHHHHHHHHcCCCCEEE-EEeccc
Confidence 333333334567999999999984 22111100 0 0011 1122445678889999999988664 456654
No 75
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=88.45 E-value=2.5 Score=32.08 Aligned_cols=50 Identities=18% Similarity=0.099 Sum_probs=33.5
Q ss_pred HHHHHHHhcccCCcEEEEeccCCCccccHHHHHHHHhhC--CCcEEecCCCcccCC
Q psy15213 66 KILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH--KDSIRLNSPGQLLPT 119 (139)
Q Consensus 66 ~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~l~~~--~~~~~~~~~~~~~P~ 119 (139)
.++..+.++|+|||.++.. .....+..+..+.++. -+++.++.+..+.|+
T Consensus 123 ~~~~~~~~~LkpgG~lvi~----~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 174 (181)
T TIGR00138 123 VLLELTLNLLKVGGYFLAY----KGKKYLDEIEEAKRKCQVLGVEPLEVPPLTGPD 174 (181)
T ss_pred HHHHHHHHhcCCCCEEEEE----cCCCcHHHHHHHHHhhhhcCceEeeccccCCCc
Confidence 4566678889999999974 4566677777777663 245665555455553
No 76
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=88.44 E-value=0.65 Score=37.01 Aligned_cols=41 Identities=20% Similarity=0.279 Sum_probs=32.4
Q ss_pred CCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCC
Q psy15213 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLW 89 (139)
Q Consensus 24 ~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~ 89 (139)
.+.||.|++|+- | ..+.+.+..++++|+|||.||-=.-.+.
T Consensus 130 ~~~fDliFIDad-------------K------------~~yp~~le~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 130 DGSFDLVFIDAD-------------K------------ADYPEYLERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred CCCccEEEEeCC-------------h------------hhCHHHHHHHHHHhCCCcEEEEeecccC
Confidence 478999999997 1 2356778889999999999987655555
No 77
>PRK04457 spermidine synthase; Provisional
Probab=88.11 E-value=2.2 Score=34.36 Aligned_cols=62 Identities=16% Similarity=0.111 Sum_probs=38.1
Q ss_pred CCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCCccccHHHHHHHHhhC
Q psy15213 25 KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH 104 (139)
Q Consensus 25 ~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~l~~~ 104 (139)
..||.|++|+. .+.+. |. . -...+++..+.+.|+|||.++.-..+-.+ ...+.++.+-+.+
T Consensus 135 ~~yD~I~~D~~-~~~~~----~~--------~-----l~t~efl~~~~~~L~pgGvlvin~~~~~~-~~~~~l~~l~~~F 195 (262)
T PRK04457 135 HSTDVILVDGF-DGEGI----ID--------A-----LCTQPFFDDCRNALSSDGIFVVNLWSRDK-RYDRYLERLESSF 195 (262)
T ss_pred CCCCEEEEeCC-CCCCC----cc--------c-----cCcHHHHHHHHHhcCCCcEEEEEcCCCch-hHHHHHHHHHHhc
Confidence 57999999973 12211 11 0 01368899999999999999985544332 2344555554444
Q ss_pred C
Q psy15213 105 K 105 (139)
Q Consensus 105 ~ 105 (139)
+
T Consensus 196 ~ 196 (262)
T PRK04457 196 E 196 (262)
T ss_pred C
Confidence 4
No 78
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=87.69 E-value=0.96 Score=34.63 Aligned_cols=38 Identities=29% Similarity=0.313 Sum_probs=25.8
Q ss_pred ccCCCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEecc
Q psy15213 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86 (139)
Q Consensus 21 ~~~~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTC 86 (139)
|.....||+|+++++|... .....+.|+|||+++.+..
T Consensus 139 ~~~~~~fD~I~~~~~~~~~----------------------------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 139 WPAYAPFDRILVTAAAPEI----------------------------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CCcCCCcCEEEEccCchhh----------------------------hHHHHHhcCCCcEEEEEEc
Confidence 4334689999999874211 1223568999999998754
No 79
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=87.68 E-value=0.67 Score=39.07 Aligned_cols=37 Identities=14% Similarity=0.113 Sum_probs=20.7
Q ss_pred cEEEEeccCCCccccHHHHHHHHhhCCCcEEecC-CCcccCCC
Q psy15213 79 GKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS-PGQLLPTV 120 (139)
Q Consensus 79 G~lvYsTCS~~~~ENE~vV~~~l~~~~~~~~~~~-~~~~~P~~ 120 (139)
+.|||..|.-.. =-.-+..+.+ ++++..+ +..+||++
T Consensus 313 ~~ivyvSC~p~t--larDl~~L~~---gY~l~~v~~~DmFPqT 350 (362)
T PRK05031 313 ERILYISCNPET--LCENLETLSQ---THKVERFALFDQFPYT 350 (362)
T ss_pred CCEEEEEeCHHH--HHHHHHHHcC---CcEEEEEEEcccCCCC
Confidence 579999997622 1222333332 4544332 35789987
No 80
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=87.43 E-value=0.4 Score=37.56 Aligned_cols=73 Identities=21% Similarity=0.248 Sum_probs=44.1
Q ss_pred CCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCCc------cccHH--H
Q psy15213 25 KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWF------EESEE--Q 96 (139)
Q Consensus 25 ~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~------~ENE~--v 96 (139)
+.||.|++|+. |- .+.+.+..++++|++||.||.=..-+.- .++.. .
T Consensus 120 ~~fD~VFiDa~-------------K~------------~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~~~~~ 174 (205)
T PF01596_consen 120 GQFDFVFIDAD-------------KR------------NYLEYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDPKTVA 174 (205)
T ss_dssp TSEEEEEEEST-------------GG------------GHHHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSHHHHH
T ss_pred CceeEEEEccc-------------cc------------chhhHHHHHhhhccCCeEEEEccccccceecCccchhhhHHH
Confidence 47999999998 21 2344566677899999999886554431 12222 2
Q ss_pred HHHH---HhhCCCcEEecCCCcccCCCCCCCCCCcEEEEE
Q psy15213 97 AIIF---SKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSL 133 (139)
Q Consensus 97 V~~~---l~~~~~~~~~~~~~~~~P~~~~~~~~~GfFia~ 133 (139)
+..| +.++|.++.. ++|- +||..+|+
T Consensus 175 ir~f~~~i~~d~~~~~~-----llpi------gdGl~l~~ 203 (205)
T PF01596_consen 175 IREFNEYIANDPRFETV-----LLPI------GDGLTLAR 203 (205)
T ss_dssp HHHHHHHHHH-TTEEEE-----EECS------TTEEEEEE
T ss_pred HHHHHHHHHhCCCeeEE-----EEEe------CCeeEEEE
Confidence 3344 3455666533 4553 38888764
No 81
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=87.42 E-value=0.96 Score=36.20 Aligned_cols=72 Identities=22% Similarity=0.244 Sum_probs=41.6
Q ss_pred cccccCccccccC--CC-CcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccC
Q psy15213 11 INKKTNNRFRFYK--NK-YFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 87 (139)
Q Consensus 11 ~~~~~~~~~~~~~--~~-~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS 87 (139)
.+-...|...|.. .+ +||.|++|++ +|...- .. -...+.++.+.+.|+|||.++.-.
T Consensus 132 ~~i~~~Dg~~~l~~~~~~~yDvIi~D~~---------dp~~~~----~~-----l~t~ef~~~~~~~L~~~Gv~v~~~-- 191 (246)
T PF01564_consen 132 VRIIIGDGRKFLKETQEEKYDVIIVDLT---------DPDGPA----PN-----LFTREFYQLCKRRLKPDGVLVLQA-- 191 (246)
T ss_dssp EEEEESTHHHHHHTSSST-EEEEEEESS---------STTSCG----GG-----GSSHHHHHHHHHHEEEEEEEEEEE--
T ss_pred eEEEEhhhHHHHHhccCCcccEEEEeCC---------CCCCCc----cc-----ccCHHHHHHHHhhcCCCcEEEEEc--
Confidence 3334445555532 23 8999999998 222110 01 123667788888999999998754
Q ss_pred CCccccHHHHHHHHh
Q psy15213 88 LWFEESEEQAIIFSK 102 (139)
Q Consensus 88 ~~~~ENE~vV~~~l~ 102 (139)
-++..+++.+..+.+
T Consensus 192 ~~~~~~~~~~~~i~~ 206 (246)
T PF01564_consen 192 GSPFLHPELFKSILK 206 (246)
T ss_dssp EETTTTHHHHHHHHH
T ss_pred cCcccchHHHHHHHH
Confidence 333445555555544
No 82
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=87.42 E-value=0.41 Score=34.78 Aligned_cols=60 Identities=20% Similarity=0.200 Sum_probs=39.2
Q ss_pred CCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCCccccHHHHHHHHhhC
Q psy15213 25 KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH 104 (139)
Q Consensus 25 ~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~l~~~ 104 (139)
..||.|.+|+-. =.+||+ .|+ .+++....+++++||+++..|++ ..|.+.|...
T Consensus 49 ~~~Da~ylDgFs-----P~~nPe---lWs-----------~e~~~~l~~~~~~~~~l~Tys~a-------~~Vr~~L~~a 102 (124)
T PF05430_consen 49 ARFDAWYLDGFS-----PAKNPE---LWS-----------EELFKKLARLSKPGGTLATYSSA-------GAVRRALQQA 102 (124)
T ss_dssp T-EEEEEE-SS------TTTSGG---GSS-----------HHHHHHHHHHEEEEEEEEES--B-------HHHHHHHHHC
T ss_pred ccCCEEEecCCC-----CcCCcc---cCC-----------HHHHHHHHHHhCCCcEEEEeech-------HHHHHHHHHc
Confidence 689999999641 145666 333 55777788899999999877764 4578888876
Q ss_pred CCcEEec
Q psy15213 105 KDSIRLN 111 (139)
Q Consensus 105 ~~~~~~~ 111 (139)
+|.+..
T Consensus 103 -GF~v~~ 108 (124)
T PF05430_consen 103 -GFEVEK 108 (124)
T ss_dssp -TEEEEE
T ss_pred -CCEEEE
Confidence 565543
No 83
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=86.83 E-value=1.7 Score=35.33 Aligned_cols=37 Identities=14% Similarity=0.223 Sum_probs=25.4
Q ss_pred HHHHHHHHhcccCCcEEEEeccCCCccccHHHHHHHHhhC
Q psy15213 65 CKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH 104 (139)
Q Consensus 65 ~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~l~~~ 104 (139)
.+++..+.++|||||+++.|.- ...+-++ |...++.+
T Consensus 239 ~~ll~~~~~~LkpgG~li~sgi--~~~~~~~-v~~~~~~~ 275 (288)
T TIGR00406 239 KELYPQFSRLVKPGGWLILSGI--LETQAQS-VCDAYEQG 275 (288)
T ss_pred HHHHHHHHHHcCCCcEEEEEeC--cHhHHHH-HHHHHHcc
Confidence 4688889999999999999874 3333344 44444543
No 84
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=86.45 E-value=3.5 Score=32.64 Aligned_cols=42 Identities=19% Similarity=0.293 Sum_probs=27.7
Q ss_pred HHHHHHHHHhcccCCcEEEEeccCCCccccHHHHHHHHhhCCCcEE
Q psy15213 64 SCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIR 109 (139)
Q Consensus 64 Q~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~l~~~~~~~~ 109 (139)
...++..+.++|||||+++.|... . +..+-+...+.++ ++..
T Consensus 192 ~~~l~~~~~~~LkpgG~lilsgi~--~-~~~~~v~~~l~~~-Gf~~ 233 (250)
T PRK00517 192 LLELAPDLARLLKPGGRLILSGIL--E-EQADEVLEAYEEA-GFTL 233 (250)
T ss_pred HHHHHHHHHHhcCCCcEEEEEECc--H-hhHHHHHHHHHHC-CCEE
Confidence 356788999999999999997543 2 2334444555554 4443
No 85
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=86.37 E-value=0.78 Score=35.16 Aligned_cols=12 Identities=42% Similarity=0.656 Sum_probs=8.3
Q ss_pred CCCcCEEEEcCC
Q psy15213 24 NKYFDRILADLP 35 (139)
Q Consensus 24 ~~~fD~ILlDaP 35 (139)
...||.|.+|||
T Consensus 112 ~~~fDiIflDPP 123 (183)
T PF03602_consen 112 GEKFDIIFLDPP 123 (183)
T ss_dssp TS-EEEEEE--S
T ss_pred CCCceEEEECCC
Confidence 579999999999
No 86
>PTZ00146 fibrillarin; Provisional
Probab=85.26 E-value=3.2 Score=34.48 Aligned_cols=35 Identities=31% Similarity=0.542 Sum_probs=25.3
Q ss_pred CCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHH-HHHHHHhcccCCcEEEEe
Q psy15213 25 KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCK-ILNNLWKMLKPGGKLLFV 84 (139)
Q Consensus 25 ~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~-lL~~a~~~lk~gG~lvYs 84 (139)
..||.|++|.. .|+ |.+ ++.+|..+|||||.++.+
T Consensus 201 ~~vDvV~~Dva---------~pd----------------q~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 201 PMVDVIFADVA---------QPD----------------QARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred CCCCEEEEeCC---------Ccc----------------hHHHHHHHHHHhccCCCEEEEE
Confidence 46999999985 111 333 344688899999999884
No 87
>PRK08317 hypothetical protein; Provisional
Probab=85.19 E-value=2.2 Score=32.20 Aligned_cols=23 Identities=22% Similarity=0.670 Sum_probs=19.6
Q ss_pred HHHHHHHHhcccCCcEEEEeccC
Q psy15213 65 CKILNNLWKMLKPGGKLLFVTCS 87 (139)
Q Consensus 65 ~~lL~~a~~~lk~gG~lvYsTCS 87 (139)
..++.++.++|||||.++.+.+.
T Consensus 104 ~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 104 ARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred HHHHHHHHHHhcCCcEEEEEecC
Confidence 55788889999999999988764
No 88
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=85.00 E-value=0.51 Score=38.14 Aligned_cols=35 Identities=40% Similarity=0.980 Sum_probs=24.7
Q ss_pred CCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcc-cCCcEE-EEecc
Q psy15213 25 KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKML-KPGGKL-LFVTC 86 (139)
Q Consensus 25 ~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~l-k~gG~l-vYsTC 86 (139)
..||.|+||-| + .| +.+.+|.+.| ++||++ +||.|
T Consensus 112 ~~~DavfLDlp---------~---Pw---------------~~i~~~~~~L~~~gG~i~~fsP~ 148 (247)
T PF08704_consen 112 SDFDAVFLDLP---------D---PW---------------EAIPHAKRALKKPGGRICCFSPC 148 (247)
T ss_dssp TSEEEEEEESS---------S---GG---------------GGHHHHHHHE-EEEEEEEEEESS
T ss_pred CcccEEEEeCC---------C---HH---------------HHHHHHHHHHhcCCceEEEECCC
Confidence 57999999999 1 12 3366777788 899977 34444
No 89
>KOG1663|consensus
Probab=85.00 E-value=1.7 Score=35.14 Aligned_cols=38 Identities=18% Similarity=0.328 Sum_probs=29.5
Q ss_pred CCCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEec
Q psy15213 23 KNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 85 (139)
Q Consensus 23 ~~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsT 85 (139)
+...||.+.+|+= | ........++++++|+||.|++=.
T Consensus 146 ~~~tfDfaFvDad-------------K------------~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 146 ESGTFDFAFVDAD-------------K------------DNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred CCCceeEEEEccc-------------h------------HHHHHHHHHHHhhcccccEEEEec
Confidence 4578999999986 1 111277888999999999999954
No 90
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=84.81 E-value=1.3 Score=33.26 Aligned_cols=36 Identities=22% Similarity=0.349 Sum_probs=27.4
Q ss_pred HHHHHHHhcccCCcEEEEeccCCCccccHHHHHHHHhhC
Q psy15213 66 KILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH 104 (139)
Q Consensus 66 ~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~l~~~ 104 (139)
+++..+.+.|+|||++++... ..++.+.+..+++++
T Consensus 112 ~~l~~~~~~Lk~gG~lv~~~~---~~~~~~~~~~~l~~~ 147 (187)
T PRK08287 112 AIIDWSLAHLHPGGRLVLTFI---LLENLHSALAHLEKC 147 (187)
T ss_pred HHHHHHHHhcCCCeEEEEEEe---cHhhHHHHHHHHHHC
Confidence 467888999999999998543 356667777788775
No 91
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=84.65 E-value=4.4 Score=31.75 Aligned_cols=47 Identities=23% Similarity=0.395 Sum_probs=31.5
Q ss_pred ccccccCCCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEec
Q psy15213 17 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 85 (139)
Q Consensus 17 ~~~~~~~~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsT 85 (139)
|...|.....||.|+..... -|.. .+..+|.++.+.|||||.++.++
T Consensus 84 d~~~~~~~~~fD~v~~~~~l------------~~~~----------d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 84 DIASWQPPQALDLIFANASL------------QWLP----------DHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred chhccCCCCCccEEEEccCh------------hhCC----------CHHHHHHHHHHhcCCCcEEEEEC
Confidence 44455555688988876541 0111 13567889999999999998863
No 92
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=84.60 E-value=1.9 Score=34.84 Aligned_cols=37 Identities=22% Similarity=0.272 Sum_probs=26.7
Q ss_pred CCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEecc
Q psy15213 25 KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86 (139)
Q Consensus 25 ~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTC 86 (139)
+.||.|++|+- | ......+..++++|++||.||.=..
T Consensus 155 ~~fD~iFiDad-------------K------------~~Y~~y~~~~l~ll~~GGviv~DNv 191 (247)
T PLN02589 155 GTFDFIFVDAD-------------K------------DNYINYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_pred CcccEEEecCC-------------H------------HHhHHHHHHHHHhcCCCeEEEEcCC
Confidence 58999999987 1 1123455666789999999987443
No 93
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=84.34 E-value=1.3 Score=37.33 Aligned_cols=37 Identities=11% Similarity=0.101 Sum_probs=19.8
Q ss_pred cEEEEeccCCCccccHHHHHHHHhhCCCcEEecC-CCcccCCC
Q psy15213 79 GKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS-PGQLLPTV 120 (139)
Q Consensus 79 G~lvYsTCS~~~~ENE~vV~~~l~~~~~~~~~~~-~~~~~P~~ 120 (139)
+.+||..|.-.. =-.-+..+.+ .+++..+ +..+||++
T Consensus 304 ~~ivYvsC~p~t--laRDl~~L~~---~Y~l~~v~~~DmFP~T 341 (353)
T TIGR02143 304 ERILYISCNPET--LKANLEQLSE---THRVERFALFDQFPYT 341 (353)
T ss_pred CcEEEEEcCHHH--HHHHHHHHhc---CcEEEEEEEcccCCCC
Confidence 689999886532 1222222322 2443332 35789987
No 94
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=84.26 E-value=1.8 Score=37.37 Aligned_cols=54 Identities=28% Similarity=0.551 Sum_probs=37.7
Q ss_pred cCCCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCCcc
Q psy15213 22 YKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFE 91 (139)
Q Consensus 22 ~~~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~ 91 (139)
...+.+|.|.+=-| + .|.+.+. +++ .|..+|..+.+.|+|||.+...|.+..-.
T Consensus 188 ~~~~s~D~I~lnFP---------d---PW~KkrH--RRl--v~~~fL~e~~RvLkpGG~l~l~TD~~~y~ 241 (390)
T PRK14121 188 LPSNSVEKIFVHFP---------V---PWDKKPH--RRV--ISEDFLNEALRVLKPGGTLELRTDSELYF 241 (390)
T ss_pred CCCCceeEEEEeCC---------C---Cccccch--hhc--cHHHHHHHHHHHcCCCcEEEEEEECHHHH
Confidence 44578898887655 1 2332222 233 37899999999999999999998876543
No 95
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=83.77 E-value=1.8 Score=36.92 Aligned_cols=38 Identities=21% Similarity=0.193 Sum_probs=27.5
Q ss_pred CCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCC
Q psy15213 25 KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLW 89 (139)
Q Consensus 25 ~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~ 89 (139)
.+||.|.+||+ |+ + ...|..|++.+++||.| |.|||=.
T Consensus 113 ~~fDvIdlDPf--Gs--------------~----------~~fld~al~~~~~~glL-~vTaTD~ 150 (374)
T TIGR00308 113 RKFHVIDIDPF--GT--------------P----------APFVDSAIQASAERGLL-LVTATDT 150 (374)
T ss_pred CCCCEEEeCCC--CC--------------c----------HHHHHHHHHhcccCCEE-EEEeccc
Confidence 57999999998 22 0 15788999999988655 5566543
No 96
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=83.75 E-value=0.63 Score=33.66 Aligned_cols=41 Identities=29% Similarity=0.414 Sum_probs=31.6
Q ss_pred CCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccC
Q psy15213 25 KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 87 (139)
Q Consensus 25 ~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS 87 (139)
+.||.|+...++ ... ..+..+|.++.++|++||.++.+.+.
T Consensus 72 ~~~D~I~~~~~l-------------~~~---------~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 72 EKFDIIISNGVL-------------HHF---------PDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TTEEEEEEESTG-------------GGT---------SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CCeeEEEEcCch-------------hhc---------cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 689999999874 111 12246788999999999999988877
No 97
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=83.27 E-value=1.9 Score=33.97 Aligned_cols=46 Identities=11% Similarity=0.059 Sum_probs=30.5
Q ss_pred ccccccCCCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEe
Q psy15213 17 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 84 (139)
Q Consensus 17 ~~~~~~~~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYs 84 (139)
|...|.....||.|+.... . .+-+ .+.+++.++.+.|||||.++..
T Consensus 80 d~~~~~~~~~fD~v~~~~~-------------l-~~~~--------d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 80 DVRDWKPKPDTDVVVSNAA-------------L-QWVP--------EHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred ChhhCCCCCCceEEEEehh-------------h-hhCC--------CHHHHHHHHHHhCCCCcEEEEE
Confidence 3344544467888888665 1 1111 1256788999999999999875
No 98
>PRK00536 speE spermidine synthase; Provisional
Probab=83.16 E-value=2.8 Score=34.18 Aligned_cols=32 Identities=22% Similarity=0.170 Sum_probs=19.4
Q ss_pred HHHHhcccCCcEEEEeccCCCccccHHHHHHHHh
Q psy15213 69 NNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSK 102 (139)
Q Consensus 69 ~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~l~ 102 (139)
+...+.|+|||.+|.=+-|... ..+.+..+.+
T Consensus 155 ~~~~~~L~~~Gi~v~Qs~sp~~--~~~~~~~i~~ 186 (262)
T PRK00536 155 DGLKRMLKEDGVFISVAKHPLL--EHVSMQNALK 186 (262)
T ss_pred HHHHHhcCCCcEEEECCCCccc--CHHHHHHHHH
Confidence 5556688999999985444442 2344444443
No 99
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=82.60 E-value=1.3 Score=36.05 Aligned_cols=22 Identities=36% Similarity=0.591 Sum_probs=19.7
Q ss_pred HHHHHHHhcccCCcEEEEeccC
Q psy15213 66 KILNNLWKMLKPGGKLLFVTCS 87 (139)
Q Consensus 66 ~lL~~a~~~lk~gG~lvYsTCS 87 (139)
.+++++.+++||||.++.||=-
T Consensus 142 ~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 142 SFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred HHHHHHHHHcCCCcEEEEeccc
Confidence 4889999999999999999854
No 100
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=82.30 E-value=2 Score=33.58 Aligned_cols=10 Identities=40% Similarity=0.677 Sum_probs=9.4
Q ss_pred CcCEEEEcCC
Q psy15213 26 YFDRILADLP 35 (139)
Q Consensus 26 ~fD~ILlDaP 35 (139)
.||.|.+|||
T Consensus 114 ~FDlVflDPP 123 (187)
T COG0742 114 PFDLVFLDPP 123 (187)
T ss_pred cccEEEeCCC
Confidence 4999999999
No 101
>PF05063 MT-A70: MT-A70 ; InterPro: IPR007757 N6-methyladenosine (m6A) is present at internal sites in eukaryotic mRNA. It is present only within a defined sequence context that has been shown to be conserved across species from plants to man. Despite its ubiquity and conserved sequence specificity, the functional significance of this modification remains a mystery [], []. MT-A70 is the S-adenosylmethionine-binding subunit of human mRNA N6-adenosine-methyltransferase (MTase), an enzyme that sequence-specifically methylates adenines in pre-mRNAs. Proteins with sequence similarity to MT-A70 have been identified in eukaryotes and prokaryotes. The resulting family is defined by sequence similarity in the carboxyl-proximal regions of the respective proteins. The amino-proximal regions of the eukaryotic proteins are highly diverse, often Pro-rich, and are conserved only within individual subfamilies []. Corresponding regions are not present in prokaryotic members of the family. MT-A70-like proteins contain examples of some of the consensus methyltransferase motifs that have been derived from mutational and structural studies of bacterial DNA methyltransferases, including the universally conserved motif IV catalytic residues and a proposed motif I (AdoMet binding) element []. The MT-A70-like family comprises four subfamilies with varying degrees of interrelatedness. One subfamily is a small group of bacterial DNA: m6A MTases. The other three are paralogous eukaryotic lineages, two of which have not been associated with MTase activity but include proteins that regulate mRNA levels via unknown mechanisms apparently not involving methylation []. Some proteins known to belong to the MT-A70-like family are listed below: Human N6-adenosine-methyltransferase 70 kDa subunit (MT-A70) (2.1.1.62 from EC). Yeast N6-adenosine-methyltransferase IME4 (2.1.1.62 from EC), which is important for induction of sporulation. Yeast karyogamy protein KAR4, a phosphoprotein required for expression of karyogamy-specific genes during mating and that it also acts during mitosis and meiosis. It has been suggested that KAR4 is inactive for methyltransfer and may not even bind AdoMet. ; GO: 0008168 methyltransferase activity, 0006139 nucleobase-containing compound metabolic process
Probab=82.04 E-value=2.8 Score=31.58 Aligned_cols=57 Identities=32% Similarity=0.442 Sum_probs=31.0
Q ss_pred cCEEEEcCCCCCccccccC-CCCCc-cCCHhHHHHHHHHHHHHHHHHHhcccCCcEE-EEeccCCCccc
Q psy15213 27 FDRILADLPCTGSGVVRRN-PDIPW-LRRKNDIKKLSKYSCKILNNLWKMLKPGGKL-LFVTCSLWFEE 92 (139)
Q Consensus 27 fD~ILlDaPCSg~G~~~r~-p~~~~-~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~l-vYsTCS~~~~E 92 (139)
||.|++|||-.....-++. .+..+ ..+.+++.+|.-. +++.+||.| +-+|.+...+.
T Consensus 1 fdvI~~DPPW~~~~~~~~~~~~~~Y~tm~~~~i~~Lpv~---------~l~~~~~~lflWvTn~~~~~~ 60 (176)
T PF05063_consen 1 FDVIYADPPWPNKSASRKGGAEAHYPTMSLDEIKSLPVP---------QLAAPGALLFLWVTNSQLPEA 60 (176)
T ss_pred CCEEEEeCCCCCcCcccccccccCCCccCHHHHHhCCHH---------HhCCCCcEEEEEeccchhhHH
Confidence 8999999998866554432 23332 2344455444322 245565443 44565555543
No 102
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=81.94 E-value=3.1 Score=33.80 Aligned_cols=57 Identities=19% Similarity=0.098 Sum_probs=32.7
Q ss_pred CCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCCccc--cHHHHHHHHh
Q psy15213 25 KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEE--SEEQAIIFSK 102 (139)
Q Consensus 25 ~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~E--NE~vV~~~l~ 102 (139)
++||.++-|||-|-.|+ .-.|.++++.||.-|..+|-..|..+.- -=..+++++.
T Consensus 111 ~~fD~f~TDPPyT~~G~-----------------------~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~ 167 (243)
T PF01861_consen 111 GKFDVFFTDPPYTPEGL-----------------------KLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLL 167 (243)
T ss_dssp S-BSEEEE---SSHHHH-----------------------HHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHH
T ss_pred cCCCEEEeCCCCCHHHH-----------------------HHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHH
Confidence 68999999999544433 4568889999998776677777665421 1135677766
Q ss_pred hC
Q psy15213 103 NH 104 (139)
Q Consensus 103 ~~ 104 (139)
+.
T Consensus 168 ~~ 169 (243)
T PF01861_consen 168 EM 169 (243)
T ss_dssp TS
T ss_pred HC
Confidence 54
No 103
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=81.25 E-value=4.6 Score=32.90 Aligned_cols=69 Identities=22% Similarity=0.308 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhcccCCcEEEEecc---CC---------CccccHHHHHHHHhhCCCcEEecCCCcccCCCCCCCCCCcE
Q psy15213 62 KYSCKILNNLWKMLKPGGKLLFVTC---SL---------WFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGF 129 (139)
Q Consensus 62 ~~Q~~lL~~a~~~lk~gG~lvYsTC---S~---------~~~ENE~vV~~~l~~~~~~~~~~~~~~~~P~~~~~~~~~Gf 129 (139)
.-.++.+++...+|||||.|+.... |. ...=||+.|...|++. ++.+.... + -.. ..+.+|+
T Consensus 176 ~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~a-G~~i~~~~-~-~~~---~~d~~~~ 249 (256)
T PF01234_consen 176 DEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEEA-GFDIEDLE-K-QSK---VSDYEGM 249 (256)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHHT-TEEEEEEE-G--TT---TB---EE
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHHc-CCEEEecc-c-ccC---cCCCCcE
Confidence 3467889999999999999997543 11 1234789999999986 56555433 1 111 2567899
Q ss_pred EEEEEEe
Q psy15213 130 FYSLFQK 136 (139)
Q Consensus 130 Fia~l~k 136 (139)
|+++=+|
T Consensus 250 ~f~~a~K 256 (256)
T PF01234_consen 250 FFLVARK 256 (256)
T ss_dssp EEEEEEE
T ss_pred EEEEEeC
Confidence 9887665
No 104
>PHA03412 putative methyltransferase; Provisional
Probab=80.55 E-value=4.3 Score=32.88 Aligned_cols=56 Identities=9% Similarity=0.217 Sum_probs=35.9
Q ss_pred CCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEE--------EeccCCC
Q psy15213 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLL--------FVTCSLW 89 (139)
Q Consensus 24 ~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lv--------YsTCS~~ 89 (139)
..+||.|+..||-.-... ++.... . .-...-.+++..|.+++++|+.|+ ||-|-..
T Consensus 112 ~~~FDlIIsNPPY~~~~~--~d~~ar----~----~g~~~~~~li~~A~~Ll~~G~~ILP~~~~~~~y~~~~~~ 175 (241)
T PHA03412 112 DTLFDMAISNPPFGKIKT--SDFKGK----Y----TGAEFEYKVIERASQIARQGTFIIPQMSANFRYSGTHYF 175 (241)
T ss_pred cCCccEEEECCCCCCccc--cccCCc----c----cccHHHHHHHHHHHHHcCCCEEEeCcccccCcccCccce
Confidence 458999999999665431 111100 0 013456789999999888887755 6666555
No 105
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=80.46 E-value=12 Score=29.55 Aligned_cols=85 Identities=18% Similarity=0.246 Sum_probs=54.3
Q ss_pred CCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCCccccHHHHHHHHhhC
Q psy15213 25 KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH 104 (139)
Q Consensus 25 ~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~l~~~ 104 (139)
..||.|+.+|| -|+.+||+| +..|..|++.. .+||| ++..-+++-++++...+
T Consensus 107 ~~~dtvimNPP---FG~~~rhaD-----------------r~Fl~~Ale~s----~vVYs---iH~a~~~~f~~~~~~~~ 159 (198)
T COG2263 107 GKFDTVIMNPP---FGSQRRHAD-----------------RPFLLKALEIS----DVVYS---IHKAGSRDFVEKFAADL 159 (198)
T ss_pred CccceEEECCC---CccccccCC-----------------HHHHHHHHHhh----heEEE---eeccccHHHHHHHHHhc
Confidence 57999999999 555566655 44566666653 78994 77777889999988877
Q ss_pred CCcEE------ecCCCcccCCCCCCCCCCcEEEEEEEec
Q psy15213 105 KDSIR------LNSPGQLLPTVNKKQDYDGFFYSLFQKR 137 (139)
Q Consensus 105 ~~~~~------~~~~~~~~P~~~~~~~~~GfFia~l~k~ 137 (139)
..... .++| +.+|+....-..-+-+|-.|+|.
T Consensus 160 G~~v~~~~~~~~~iP-~~y~fH~k~~~~I~v~i~r~~k~ 197 (198)
T COG2263 160 GGTVTHIERARFPIP-RTYPFHRKRVRRIEVDIFRFEKG 197 (198)
T ss_pred CCeEEEEEEEEEecC-ccCchhhheeeeeeEEEEEEEec
Confidence 43222 2233 45554322233456666666654
No 106
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=80.39 E-value=2.1 Score=28.96 Aligned_cols=37 Identities=27% Similarity=0.321 Sum_probs=25.4
Q ss_pred CCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEE
Q psy15213 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83 (139)
Q Consensus 24 ~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvY 83 (139)
...||.|++|++ .. . +.-..-+..+++.++|||.||+
T Consensus 67 ~~~~dli~iDg~--------------H~--~-------~~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 67 DGPIDLIFIDGD--------------HS--Y-------EAVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp H--EEEEEEES-------------------H-------HHHHHHHHHHGGGEEEEEEEEE
T ss_pred CCCEEEEEECCC--------------CC--H-------HHHHHHHHHHHHHcCCCeEEEE
Confidence 368999999998 11 1 2335568889999999999986
No 107
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=80.07 E-value=1.1 Score=28.68 Aligned_cols=22 Identities=32% Similarity=0.735 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhcccCCcEEEE
Q psy15213 62 KYSCKILNNLWKMLKPGGKLLF 83 (139)
Q Consensus 62 ~~Q~~lL~~a~~~lk~gG~lvY 83 (139)
..+.++++++.+.|||||+++.
T Consensus 74 ~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCHHHHHHHHHHHcCcCeEEeC
Confidence 4567889999999999999974
No 108
>PLN03075 nicotianamine synthase; Provisional
Probab=80.01 E-value=3.8 Score=34.06 Aligned_cols=41 Identities=22% Similarity=0.283 Sum_probs=30.4
Q ss_pred CCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEec
Q psy15213 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 85 (139)
Q Consensus 24 ~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsT 85 (139)
...||.|++++= .-+++ ..+.++|.+..+.|+|||.+++-+
T Consensus 193 l~~FDlVF~~AL--------------i~~dk-------~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 193 LKEYDVVFLAAL--------------VGMDK-------EEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred cCCcCEEEEecc--------------ccccc-------ccHHHHHHHHHHhcCCCcEEEEec
Confidence 368999999952 11111 233778999999999999999977
No 109
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=79.73 E-value=1.9 Score=38.86 Aligned_cols=56 Identities=21% Similarity=0.233 Sum_probs=38.4
Q ss_pred CCcCEEEEcC--CCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCCccccHHHHHHHHh
Q psy15213 25 KYFDRILADL--PCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSK 102 (139)
Q Consensus 25 ~~fD~ILlDa--PCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~l~ 102 (139)
..||.|.+|+ | .+||++ |+ .+++.+..+++++||+++..|++ ..|.+-|.
T Consensus 165 ~~~d~~~lD~FsP-------~~np~~---W~-----------~~~~~~l~~~~~~~~~~~t~t~a-------~~vr~~l~ 216 (662)
T PRK01747 165 ARADAWFLDGFAP-------AKNPDM---WS-----------PNLFNALARLARPGATLATFTSA-------GFVRRGLQ 216 (662)
T ss_pred ccccEEEeCCCCC-------ccChhh---cc-----------HHHHHHHHHHhCCCCEEEEeehH-------HHHHHHHH
Confidence 4699999995 7 566763 33 55666677788999999976654 45566666
Q ss_pred hCCCcEE
Q psy15213 103 NHKDSIR 109 (139)
Q Consensus 103 ~~~~~~~ 109 (139)
.. +|++
T Consensus 217 ~~-GF~v 222 (662)
T PRK01747 217 EA-GFTV 222 (662)
T ss_pred Hc-CCee
Confidence 54 4443
No 110
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=78.96 E-value=1.3 Score=34.67 Aligned_cols=43 Identities=26% Similarity=0.502 Sum_probs=26.6
Q ss_pred cCccccccCCCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEE
Q psy15213 15 TNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83 (139)
Q Consensus 15 ~~~~~~~~~~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvY 83 (139)
..|...+.....||+|+++-| ... .+.|..|+.++++||.+-|
T Consensus 158 ~~D~~~~~~~~~~drvim~lp-------------~~~-------------~~fl~~~~~~~~~~g~ihy 200 (200)
T PF02475_consen 158 NGDAREFLPEGKFDRVIMNLP-------------ESS-------------LEFLDAALSLLKEGGIIHY 200 (200)
T ss_dssp ES-GGG---TT-EEEEEE--T-------------SSG-------------GGGHHHHHHHEEEEEEEEE
T ss_pred cCCHHHhcCccccCEEEECCh-------------HHH-------------HHHHHHHHHHhcCCcEEEC
Confidence 445555555679999999999 211 3457778899999999877
No 111
>KOG1540|consensus
Probab=78.85 E-value=1.6 Score=36.13 Aligned_cols=43 Identities=26% Similarity=0.386 Sum_probs=33.1
Q ss_pred HHHHHHHhcccCCcEEEEeccCCCccccHHHHHHHHhhCCCcEEecC
Q psy15213 66 KILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS 112 (139)
Q Consensus 66 ~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~l~~~~~~~~~~~ 112 (139)
+-|+.|.+.|||||++. |--.+.+|.+.++||-+.+ .+.++|.
T Consensus 195 k~l~EAYRVLKpGGrf~---cLeFskv~~~~l~~fy~~y-sf~Vlpv 237 (296)
T KOG1540|consen 195 KALREAYRVLKPGGRFS---CLEFSKVENEPLKWFYDQY-SFDVLPV 237 (296)
T ss_pred HHHHHHHHhcCCCcEEE---EEEccccccHHHHHHHHhh-hhhhhch
Confidence 45789999999999875 8777888878889998876 2334443
No 112
>KOG1596|consensus
Probab=78.55 E-value=6.8 Score=32.44 Aligned_cols=39 Identities=21% Similarity=0.131 Sum_probs=30.8
Q ss_pred HHHHHHhcccCCcEEEEe---ccCCCccccHHHHHHHHhhCC
Q psy15213 67 ILNNLWKMLKPGGKLLFV---TCSLWFEESEEQAIIFSKNHK 105 (139)
Q Consensus 67 lL~~a~~~lk~gG~lvYs---TCS~~~~ENE~vV~~~l~~~~ 105 (139)
+..+|-.+||+||..|.| .|.-+...+|.|-+.=.++..
T Consensus 243 vaLNA~~FLk~gGhfvisikancidstv~ae~vFa~Ev~klq 284 (317)
T KOG1596|consen 243 VALNAQYFLKNGGHFVISIKANCIDSTVFAEAVFAAEVKKLQ 284 (317)
T ss_pred hhhhhhhhhccCCeEEEEEecccccccccHHHHHHHHHHHHH
Confidence 445888899999988775 799999999999776665543
No 113
>KOG1562|consensus
Probab=78.41 E-value=3 Score=35.21 Aligned_cols=77 Identities=17% Similarity=0.172 Sum_probs=49.1
Q ss_pred ccccccccccccCccccccC---CCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcE
Q psy15213 4 GEIESSDINKKTNNRFRFYK---NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80 (139)
Q Consensus 4 ~~i~~~~~~~~~~~~~~~~~---~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~ 80 (139)
++-+..++.-...|...+++ .+.||+|++|.. +|. ....+.+|+....-....||++|+
T Consensus 170 ~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii~dss---------dpv---------gpa~~lf~~~~~~~v~~aLk~dgv 231 (337)
T KOG1562|consen 170 CGYEGKKVKLLIGDGFLFLEDLKENPFDVIITDSS---------DPV---------GPACALFQKPYFGLVLDALKGDGV 231 (337)
T ss_pred cccCCCceEEEeccHHHHHHHhccCCceEEEEecC---------Ccc---------chHHHHHHHHHHHHHHHhhCCCcE
Confidence 33444444444445555533 579999999976 222 223456777777777888899999
Q ss_pred EEEeccCCCccccHHHHHHHHhhC
Q psy15213 81 LLFVTCSLWFEESEEQAIIFSKNH 104 (139)
Q Consensus 81 lvYsTCS~~~~ENE~vV~~~l~~~ 104 (139)
++. ..|+.-+-..++++.
T Consensus 232 ~~~------q~ec~wl~~~~i~e~ 249 (337)
T KOG1562|consen 232 VCT------QGECMWLHLDYIKEG 249 (337)
T ss_pred EEE------ecceehHHHHHHHHH
Confidence 843 446666666665543
No 114
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=78.18 E-value=6 Score=30.06 Aligned_cols=20 Identities=35% Similarity=0.539 Sum_probs=16.3
Q ss_pred HHHHHHHHhcccCCcEEEEe
Q psy15213 65 CKILNNLWKMLKPGGKLLFV 84 (139)
Q Consensus 65 ~~lL~~a~~~lk~gG~lvYs 84 (139)
..++.++.++|||||+++..
T Consensus 113 ~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 113 PEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred HHHHHHHHHHhCCCcEEEEE
Confidence 56788999999999986554
No 115
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=78.10 E-value=4.2 Score=31.58 Aligned_cols=11 Identities=18% Similarity=0.374 Sum_probs=10.0
Q ss_pred CCcCEEEEcCC
Q psy15213 25 KYFDRILADLP 35 (139)
Q Consensus 25 ~~fD~ILlDaP 35 (139)
..||.|++|||
T Consensus 120 ~~fDlV~~DPP 130 (199)
T PRK10909 120 TPHNVVFVDPP 130 (199)
T ss_pred CCceEEEECCC
Confidence 46999999999
No 116
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=76.56 E-value=3.1 Score=33.19 Aligned_cols=68 Identities=24% Similarity=0.304 Sum_probs=45.8
Q ss_pred ccccCccccccCCC-CcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCCc
Q psy15213 12 NKKTNNRFRFYKNK-YFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWF 90 (139)
Q Consensus 12 ~~~~~~~~~~~~~~-~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~ 90 (139)
..|+...-.|.... ..|+|.+-=| +|.-|.+-.+.++ .|...|....+.|+|||.|-+.|
T Consensus 104 ~~DA~~~l~~~~~~~sl~~I~i~FP---------DPWpKkRH~KRRl-----~~~~fl~~~a~~Lk~gG~l~~aT----- 164 (227)
T COG0220 104 CGDAVEVLDYLIPDGSLDKIYINFP---------DPWPKKRHHKRRL-----TQPEFLKLYARKLKPGGVLHFAT----- 164 (227)
T ss_pred cCCHHHHHHhcCCCCCeeEEEEECC---------CCCCCcccccccc-----CCHHHHHHHHHHccCCCEEEEEe-----
Confidence 33444455555555 8888888777 5544433223334 67888999999999999997765
Q ss_pred cccHHHHHH
Q psy15213 91 EESEEQAII 99 (139)
Q Consensus 91 ~ENE~vV~~ 99 (139)
-+++..++
T Consensus 165 -D~~~y~e~ 172 (227)
T COG0220 165 -DNEEYFEW 172 (227)
T ss_pred -cCHHHHHH
Confidence 56666666
No 117
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=75.31 E-value=5.2 Score=27.76 Aligned_cols=85 Identities=16% Similarity=0.192 Sum_probs=50.1
Q ss_pred CcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEecc-CCC-ccccHHHHHHHHhh
Q psy15213 26 YFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC-SLW-FEESEEQAIIFSKN 103 (139)
Q Consensus 26 ~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTC-S~~-~~ENE~vV~~~l~~ 103 (139)
+||.|+=-||............. ..+-.++..-.+..|++++ +|.+.|-|= ++. ..+.-.....+|-+
T Consensus 2 kFD~VIGNPPY~~~~~~~~~~~~--------~~~~~dlY~~Fie~~~~ll--~G~~~~I~P~~~l~~~~~~~~lR~~l~~ 71 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIKSLSKKKKK--------KKKKSDLYILFIEKSLNLL--NGYLSFITPNSFLKSGKYGKKLRKFLLN 71 (106)
T ss_pred CcCEEEECCCChhhccccchhhc--------ccccCcHHHHHHHHHHHHh--CCeEEEEeChHHhCcCchHHHHHHHHhc
Confidence 69999999997655432211110 0114566677888999988 889977554 444 45555666666654
Q ss_pred CCCc-EEecCCCc--ccCCC
Q psy15213 104 HKDS-IRLNSPGQ--LLPTV 120 (139)
Q Consensus 104 ~~~~-~~~~~~~~--~~P~~ 120 (139)
...+ .+...+.. +|...
T Consensus 72 ~~~i~~i~~f~~~~~vF~~a 91 (106)
T PF07669_consen 72 NTNIKKIIDFGERKKVFEDA 91 (106)
T ss_pred CCCeeEEEECCCcccCCCCC
Confidence 4444 33444322 56643
No 118
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=74.97 E-value=16 Score=32.21 Aligned_cols=97 Identities=20% Similarity=0.153 Sum_probs=52.9
Q ss_pred Cccccccc-cccccccCcccccc----CCCCcCEEEEcCCCCCccccccCCCCCc-------c-CCHhHHHHHHHHHHHH
Q psy15213 1 MIAGEIES-SDINKKTNNRFRFY----KNKYFDRILADLPCTGSGVVRRNPDIPW-------L-RRKNDIKKLSKYSCKI 67 (139)
Q Consensus 1 ~~~~~i~~-~~~~~~~~~~~~~~----~~~~fD~ILlDaPCSg~G~~~r~p~~~~-------~-~~~~~~~~l~~~Q~~l 67 (139)
||+.+|.. -++........++. +...||.|+--||-|+.|...-.-+..+ . ...+.-.. ...
T Consensus 234 ~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~af 308 (489)
T COG0286 234 LILHGIEGDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSAD-----LAF 308 (489)
T ss_pred HHHhCCCccccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchH-----HHH
Confidence 56777774 24444444344444 4478999999999986665542101100 0 11111111 445
Q ss_pred HHHHHhcccCCc---EEEEeccCCCccccHHHHHHHHhh
Q psy15213 68 LNNLWKMLKPGG---KLLFVTCSLWFEESEEQAIIFSKN 103 (139)
Q Consensus 68 L~~a~~~lk~gG---~lvYsTCS~~~~ENE~vV~~~l~~ 103 (139)
+.+.+..++||| .++..- .+...-+|..|...|-.
T Consensus 309 ~~h~~~~l~~~g~aaivl~~g-vlfr~~~e~~IR~~l~~ 346 (489)
T COG0286 309 LQHILYKLKPGGRAAIVLPDG-VLFRGGAEKDIRKDLLE 346 (489)
T ss_pred HHHHHHhcCCCceEEEEecCC-cCcCCCchHHHHHHHHh
Confidence 667777888865 333333 33333368888777665
No 119
>PRK07402 precorrin-6B methylase; Provisional
Probab=74.95 E-value=3.2 Score=31.36 Aligned_cols=24 Identities=46% Similarity=0.905 Sum_probs=21.0
Q ss_pred HHHHHHHHhcccCCcEEEEeccCC
Q psy15213 65 CKILNNLWKMLKPGGKLLFVTCSL 88 (139)
Q Consensus 65 ~~lL~~a~~~lk~gG~lvYsTCS~ 88 (139)
.+++..+.+.|+|||++++.+++.
T Consensus 122 ~~~l~~~~~~LkpgG~li~~~~~~ 145 (196)
T PRK07402 122 KEILQAVWQYLKPGGRLVATASSL 145 (196)
T ss_pred HHHHHHHHHhcCCCeEEEEEeecH
Confidence 578899999999999999998763
No 120
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=74.41 E-value=6 Score=30.29 Aligned_cols=20 Identities=30% Similarity=0.908 Sum_probs=17.1
Q ss_pred HHHHHHHhcccCCcEEEEec
Q psy15213 66 KILNNLWKMLKPGGKLLFVT 85 (139)
Q Consensus 66 ~lL~~a~~~lk~gG~lvYsT 85 (139)
++|..+.+.|+|||.++..+
T Consensus 132 ~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 132 QVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred HHHHHHHHHcCcCeEEEEEE
Confidence 67889999999999998653
No 121
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=74.17 E-value=4.2 Score=31.48 Aligned_cols=13 Identities=31% Similarity=0.508 Sum_probs=10.1
Q ss_pred HhcccCCcEEEEe
Q psy15213 72 WKMLKPGGKLLFV 84 (139)
Q Consensus 72 ~~~lk~gG~lvYs 84 (139)
++.|||||+|+..
T Consensus 163 ~~~LkpgG~lvi~ 175 (212)
T PRK13942 163 IEQLKDGGIMVIP 175 (212)
T ss_pred HHhhCCCcEEEEE
Confidence 4468999998773
No 122
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=72.11 E-value=6 Score=31.19 Aligned_cols=21 Identities=38% Similarity=0.887 Sum_probs=17.2
Q ss_pred HHHHHHHHhcccCCcEEEEec
Q psy15213 65 CKILNNLWKMLKPGGKLLFVT 85 (139)
Q Consensus 65 ~~lL~~a~~~lk~gG~lvYsT 85 (139)
..+|..+.++|||||+++...
T Consensus 129 ~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 129 KSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred HHHHHHHHHHcCCCeEEEEEE
Confidence 367889999999999997643
No 123
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=71.67 E-value=34 Score=30.00 Aligned_cols=110 Identities=12% Similarity=0.116 Sum_probs=53.2
Q ss_pred CCCCcCEEEEcCCCCCccccccCC---CCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEe-ccCCCccccH-HHH
Q psy15213 23 KNKYFDRILADLPCTGSGVVRRNP---DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV-TCSLWFEESE-EQA 97 (139)
Q Consensus 23 ~~~~fD~ILlDaPCSg~G~~~r~p---~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYs-TCS~~~~ENE-~vV 97 (139)
....||.|+.+||-+..-.....| +..+.+....+..+.......+.++...|++||+..-. .=.+.-.-++ .++
T Consensus 290 ~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~~gvl~~~~~e~~i 369 (501)
T TIGR00497 290 NENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCFPGILYREGKEQTI 369 (501)
T ss_pred ccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEecCCcccCCCchHHH
Confidence 345799999999987531101111 11111111112233455777888899999999963321 1122222233 333
Q ss_pred H-HHHhhCCCcEEecCCCcccCCCCCCCCCCcEEEEEEEec
Q psy15213 98 I-IFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137 (139)
Q Consensus 98 ~-~~l~~~~~~~~~~~~~~~~P~~~~~~~~~GfFia~l~k~ 137 (139)
. +.|..+-..-++.+|...+.. .+...||=.++|.
T Consensus 370 r~~lL~~~~~~avi~Lp~~~f~~-----t~i~~~I~~~~k~ 405 (501)
T TIGR00497 370 RKYLVDQNFVDAVIQLPSNLFST-----TSIATSILVLKKN 405 (501)
T ss_pred HHHHHHcCcEEEEEeCCccccCC-----CCCCEEEEEEeCC
Confidence 3 344443211222334333332 2356777777753
No 124
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=71.53 E-value=25 Score=28.95 Aligned_cols=56 Identities=18% Similarity=0.304 Sum_probs=34.1
Q ss_pred ccCccccccC--CCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccC
Q psy15213 14 KTNNRFRFYK--NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 87 (139)
Q Consensus 14 ~~~~~~~~~~--~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS 87 (139)
.-.|...|-. ..+||+|++|.- +|. .-. +.+ .+.+..+.+-+.|+++|++|.=+=|
T Consensus 135 ~i~Dg~~~v~~~~~~fDvIi~D~t---------dp~-gp~---~~L-----ft~eFy~~~~~~L~~~Gi~v~q~~~ 192 (282)
T COG0421 135 IIDDGVEFLRDCEEKFDVIIVDST---------DPV-GPA---EAL-----FTEEFYEGCRRALKEDGIFVAQAGS 192 (282)
T ss_pred EeccHHHHHHhCCCcCCEEEEcCC---------CCC-Ccc---ccc-----CCHHHHHHHHHhcCCCcEEEEecCC
Confidence 3345555533 347999999965 221 000 001 2366677778899999999886444
No 125
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=71.52 E-value=1.5 Score=29.05 Aligned_cols=51 Identities=16% Similarity=0.262 Sum_probs=36.0
Q ss_pred cCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCCccccHHHHHHHHhhCCC
Q psy15213 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 106 (139)
Q Consensus 27 fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~l~~~~~ 106 (139)
++...+++.--|.|.. ..|+..|++.++..|.-|..+||+. ...+++||+
T Consensus 25 i~hT~V~~~~rGqGia----------------------~~L~~~~l~~a~~~~~kv~p~C~y~--------~~~~~~hpe 74 (78)
T PF14542_consen 25 ITHTEVPPELRGQGIA----------------------KKLVEAALDYARENGLKVVPTCSYV--------AKYFRRHPE 74 (78)
T ss_dssp EEEEEE-CSSSTTTHH----------------------HHHHHHHHHHHHHTT-EEEETSHHH--------HHHHHH-GG
T ss_pred EEEEEECccccCCcHH----------------------HHHHHHHHHHHHHCCCEEEEECHHH--------HHHHHhCcc
Confidence 4666777776666553 6788899999999999999999974 366677765
Q ss_pred c
Q psy15213 107 S 107 (139)
Q Consensus 107 ~ 107 (139)
+
T Consensus 75 y 75 (78)
T PF14542_consen 75 Y 75 (78)
T ss_dssp G
T ss_pred c
Confidence 3
No 126
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=71.03 E-value=7.3 Score=29.83 Aligned_cols=14 Identities=43% Similarity=0.622 Sum_probs=11.3
Q ss_pred HHhcccCCcEEEEe
Q psy15213 71 LWKMLKPGGKLLFV 84 (139)
Q Consensus 71 a~~~lk~gG~lvYs 84 (139)
.++.|+|||+|+..
T Consensus 159 l~~~L~~gG~lvi~ 172 (205)
T PRK13944 159 LVRQLKDGGVLVIP 172 (205)
T ss_pred HHHhcCcCcEEEEE
Confidence 45678999999874
No 127
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=68.15 E-value=16 Score=27.80 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=16.9
Q ss_pred HHHHHHHHHhcccCCcEEEEe
Q psy15213 64 SCKILNNLWKMLKPGGKLLFV 84 (139)
Q Consensus 64 Q~~lL~~a~~~lk~gG~lvYs 84 (139)
...++.+..++|+|||.+++.
T Consensus 113 ~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 113 IPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred HHHHHHHHHHHcCCCcEEEEE
Confidence 357888999999999996553
No 128
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=67.80 E-value=4.6 Score=30.07 Aligned_cols=39 Identities=33% Similarity=0.365 Sum_probs=26.4
Q ss_pred HHHHHHHHhcccCCcEEEEeccCCCc---cccHHHHHHHHhhC
Q psy15213 65 CKILNNLWKMLKPGGKLLFVTCSLWF---EESEEQAIIFSKNH 104 (139)
Q Consensus 65 ~~lL~~a~~~lk~gG~lvYsTCS~~~---~ENE~vV~~~l~~~ 104 (139)
..-|..|+++|++||+|+-..=.=++ +|-+.|.+ +++..
T Consensus 72 l~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~-~~~~L 113 (140)
T PF06962_consen 72 LKALEAALELLKPGGIITIVVYPGHPGGKEESEAVEE-FLASL 113 (140)
T ss_dssp HHHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHH-HHHTS
T ss_pred HHHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHH-HHHhC
Confidence 56788999999999999876555565 45555544 44443
No 129
>KOG2899|consensus
Probab=67.79 E-value=8.2 Score=31.89 Aligned_cols=57 Identities=18% Similarity=0.225 Sum_probs=37.2
Q ss_pred ccCCCCcCEEEEcCCCCCccccccCCCCCc---cCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCCccccHHH
Q psy15213 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPW---LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQ 96 (139)
Q Consensus 21 ~~~~~~fD~ILlDaPCSg~G~~~r~p~~~~---~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~v 96 (139)
|.....||.||+=.= .+| .|..+-+ ++++.++..+|.|||+||-=-=-+..-++.+-
T Consensus 161 ~~~~~~fDiIlcLSi------------TkWIHLNwgD~GL-------~~ff~kis~ll~pgGiLvvEPQpWksY~kaar 220 (288)
T KOG2899|consen 161 DMIQPEFDIILCLSI------------TKWIHLNWGDDGL-------RRFFRKISSLLHPGGILVVEPQPWKSYKKAAR 220 (288)
T ss_pred hhccccccEEEEEEe------------eeeEecccccHHH-------HHHHHHHHHhhCcCcEEEEcCCchHHHHHHHH
Confidence 556788999996422 134 2444444 78899999999999999974444443333333
No 130
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=66.82 E-value=14 Score=32.47 Aligned_cols=53 Identities=9% Similarity=0.008 Sum_probs=29.6
Q ss_pred HHHHHhcccCCcEEEEeccC-CCccccHHHHHHHHhhCCCcE-EecCC--CcccCCC
Q psy15213 68 LNNLWKMLKPGGKLLFVTCS-LWFEESEEQAIIFSKNHKDSI-RLNSP--GQLLPTV 120 (139)
Q Consensus 68 L~~a~~~lk~gG~lvYsTCS-~~~~ENE~vV~~~l~~~~~~~-~~~~~--~~~~P~~ 120 (139)
+..|+++|++||++.+.+=+ +........+...+-++..+. +..++ ..+|++.
T Consensus 179 ~~~~~~lL~~~G~~~~I~P~s~l~~~~~~~lR~~ll~~~~i~~I~~f~~~~~lF~~v 235 (524)
T TIGR02987 179 EEISLEIANKNGYVSIISPASWLGDKTGENLREYIFNNRLINCIQYFQEEAKLFSGV 235 (524)
T ss_pred HHHHHHhcCCCCEEEEEEChHHhcCccHHHHHHHHHhCCeeEEEEECCccccCcCCC
Confidence 46799999999999985433 223344445555443332332 22222 3566643
No 131
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=66.76 E-value=4.6 Score=26.69 Aligned_cols=17 Identities=47% Similarity=0.981 Sum_probs=13.4
Q ss_pred HHHHHHHHhcccCCcEE
Q psy15213 65 CKILNNLWKMLKPGGKL 81 (139)
Q Consensus 65 ~~lL~~a~~~lk~gG~l 81 (139)
..+|.++.++|||||.|
T Consensus 83 ~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 83 EAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp HHHHHHHTTT-TSS-EE
T ss_pred HHHHHHHHHHcCCCCCC
Confidence 58899999999999986
No 132
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=65.70 E-value=4.2 Score=28.72 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=19.7
Q ss_pred HHHHHHHHhcccCCcEEEEeccC
Q psy15213 65 CKILNNLWKMLKPGGKLLFVTCS 87 (139)
Q Consensus 65 ~~lL~~a~~~lk~gG~lvYsTCS 87 (139)
..+|....++|||||+++.++=.
T Consensus 95 ~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 95 EEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp HHHHHHHHHCEEEEEEEEEEEEB
T ss_pred HHHHHHHHHhcCCCCEEEEEEcC
Confidence 57889999999999999997743
No 133
>PRK10634 tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; Provisional
Probab=65.35 E-value=10 Score=29.16 Aligned_cols=39 Identities=10% Similarity=0.127 Sum_probs=32.4
Q ss_pred HHHHHHHHHhcccCCcEEEEeccCCC----ccccHHHHHHHHh
Q psy15213 64 SCKILNNLWKMLKPGGKLLFVTCSLW----FEESEEQAIIFSK 102 (139)
Q Consensus 64 Q~~lL~~a~~~lk~gG~lvYsTCS~~----~~ENE~vV~~~l~ 102 (139)
|.+.+.+|.+.|+.||.++|-|=|+. ...|++-|+++.+
T Consensus 6 ~~~~i~~a~~~L~~G~vv~~PTdTvYgL~~~~~n~~Av~ri~~ 48 (190)
T PRK10634 6 QGDAIAAAVDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLE 48 (190)
T ss_pred cHHHHHHHHHHHHCCCEEEEeCCchhhhhcCCCCHHHHHHHHH
Confidence 46678899999999999999998876 3478888888864
No 134
>KOG1709|consensus
Probab=65.19 E-value=12 Score=30.58 Aligned_cols=21 Identities=19% Similarity=0.455 Sum_probs=16.7
Q ss_pred HHHHHHHHhcccCCcEEEEec
Q psy15213 65 CKILNNLWKMLKPGGKLLFVT 85 (139)
Q Consensus 65 ~~lL~~a~~~lk~gG~lvYsT 85 (139)
+...+++..+|||+|.+-|..
T Consensus 186 ~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 186 RHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred HHHHHHHhhhcCCCceEEEec
Confidence 444559999999999888854
No 135
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=64.94 E-value=8.5 Score=31.13 Aligned_cols=60 Identities=15% Similarity=0.204 Sum_probs=34.7
Q ss_pred CcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCCccccHHHHHHHHhhCC
Q psy15213 26 YFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 105 (139)
Q Consensus 26 ~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~l~~~~ 105 (139)
..+.+++|-||||.-+.. ...+.+.. .++=.+|-.++|||-.+ +|=|++.+.+.=-|.
T Consensus 151 ~P~i~vlDEP~sGLDi~~----------~r~~~dfi----------~q~k~egr~viFSSH~m--~EvealCDrvivlh~ 208 (245)
T COG4555 151 DPSILVLDEPTSGLDIRT----------RRKFHDFI----------KQLKNEGRAVIFSSHIM--QEVEALCDRVIVLHK 208 (245)
T ss_pred CCCeEEEcCCCCCccHHH----------HHHHHHHH----------HHhhcCCcEEEEecccH--HHHHHhhheEEEEec
Confidence 578999999999984421 11121111 11224588899998665 344555555544444
Q ss_pred Cc
Q psy15213 106 DS 107 (139)
Q Consensus 106 ~~ 107 (139)
+-
T Consensus 209 Ge 210 (245)
T COG4555 209 GE 210 (245)
T ss_pred Cc
Confidence 43
No 136
>COG0009 SUA5 Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]
Probab=64.24 E-value=11 Score=29.79 Aligned_cols=38 Identities=16% Similarity=0.245 Sum_probs=32.4
Q ss_pred HHHHHHHHhcccCCcEEEEeccCCC----ccccHHHHHHHHh
Q psy15213 65 CKILNNLWKMLKPGGKLLFVTCSLW----FEESEEQAIIFSK 102 (139)
Q Consensus 65 ~~lL~~a~~~lk~gG~lvYsTCS~~----~~ENE~vV~~~l~ 102 (139)
...+..|.+.++.||.++|-|=|.. ...|++.|+++.+
T Consensus 13 ~~~~~~a~~~l~~G~vVa~PTeTVYGLg~~~~~~~Av~~i~~ 54 (211)
T COG0009 13 PRAIEKAVEALRKGGVVAYPTDTVYGLGADATNEEAVERLYE 54 (211)
T ss_pred hHHHHHHHHHHHcCCEEEEEccchheeecCCCCHHHHHHHHH
Confidence 5678889999999999999999986 5677888888865
No 137
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=63.99 E-value=6.4 Score=30.77 Aligned_cols=40 Identities=28% Similarity=0.370 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcccCCcEEEEeccCCCccccHHHHHHHHhhCCC
Q psy15213 64 SCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 106 (139)
Q Consensus 64 Q~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~l~~~~~ 106 (139)
..++|+.++.+|||||+||--. ...||+...-..++++..
T Consensus 114 i~~ile~~~~~l~~ggrlV~na---itlE~~~~a~~~~~~~g~ 153 (187)
T COG2242 114 IEEILEAAWERLKPGGRLVANA---ITLETLAKALEALEQLGG 153 (187)
T ss_pred HHHHHHHHHHHcCcCCeEEEEe---ecHHHHHHHHHHHHHcCC
Confidence 4788999999999999999732 345777777777877644
No 138
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=63.62 E-value=7.5 Score=30.33 Aligned_cols=21 Identities=33% Similarity=0.804 Sum_probs=18.8
Q ss_pred HHHHHHHHhcccCCcEEEEec
Q psy15213 65 CKILNNLWKMLKPGGKLLFVT 85 (139)
Q Consensus 65 ~~lL~~a~~~lk~gG~lvYsT 85 (139)
..+|.++.+.|+|||.++++|
T Consensus 120 ~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 120 STALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred HHHHHHHHHHcCCCeEEEEEe
Confidence 567888999999999999986
No 139
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=63.29 E-value=23 Score=32.85 Aligned_cols=70 Identities=19% Similarity=0.255 Sum_probs=45.7
Q ss_pred CCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEec-cCCCccccHHHHHHHHh
Q psy15213 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT-CSLWFEESEEQAIIFSK 102 (139)
Q Consensus 24 ~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsT-CS~~~~ENE~vV~~~l~ 102 (139)
+.++|.|++|+. ..+.....+ .-..+-..+.+++.++|.|+|=| .|....++..++..+-.
T Consensus 413 ~~~idLiv~DmE---------------V~d~~~~~k---Ie~~l~~~~~~ll~~~gtLIfKTYlt~l~~~~~~il~~lg~ 474 (675)
T PF14314_consen 413 NLSIDLIVMDME---------------VRDDSIIRK---IEDNLRDYVHSLLEEPGTLIFKTYLTRLLSPDYNILDLLGR 474 (675)
T ss_pred CCcccEEEEece---------------ecChHHHHH---HHHHHHHHHHHhcCCCcEEEEehhHhhhhcchhhHHHHHHh
Confidence 568999999999 333333322 33344556667888999999977 34444555567777777
Q ss_pred hCCCcEEec
Q psy15213 103 NHKDSIRLN 111 (139)
Q Consensus 103 ~~~~~~~~~ 111 (139)
.++.++++.
T Consensus 475 ~F~~V~l~q 483 (675)
T PF14314_consen 475 YFKSVELVQ 483 (675)
T ss_pred hcCceEEEE
Confidence 777766543
No 140
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=63.26 E-value=12 Score=32.19 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=19.8
Q ss_pred HHHHHHHHhcccCCcEEEEeccCCC
Q psy15213 65 CKILNNLWKMLKPGGKLLFVTCSLW 89 (139)
Q Consensus 65 ~~lL~~a~~~lk~gG~lvYsTCS~~ 89 (139)
.++|.+..+.|||||++++.-.++.
T Consensus 122 ~~~l~~~~r~Lk~gG~l~~~d~~~~ 146 (475)
T PLN02336 122 ENLAERMVKWLKVGGYIFFRESCFH 146 (475)
T ss_pred HHHHHHHHHhcCCCeEEEEEeccCC
Confidence 6788889999999999988644433
No 141
>PRK11630 hypothetical protein; Provisional
Probab=62.90 E-value=10 Score=29.60 Aligned_cols=37 Identities=16% Similarity=0.319 Sum_probs=30.5
Q ss_pred HHHHHHHhcccCCcEEEEeccCCC----ccccHHHHHHHHh
Q psy15213 66 KILNNLWKMLKPGGKLLFVTCSLW----FEESEEQAIIFSK 102 (139)
Q Consensus 66 ~lL~~a~~~lk~gG~lvYsTCS~~----~~ENE~vV~~~l~ 102 (139)
+.+..|.+.|+.||.++|-|=|+. ...|++.|+++.+
T Consensus 15 ~~i~~a~~~L~~G~vi~~PTdTvYgL~~d~~n~~Av~~l~~ 55 (206)
T PRK11630 15 RLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICR 55 (206)
T ss_pred HHHHHHHHHHHCCCEEEEeCCChHhhhcCCCCHHHHHHHHH
Confidence 347788899999999999998876 3478899999854
No 142
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=62.27 E-value=16 Score=28.73 Aligned_cols=23 Identities=26% Similarity=0.592 Sum_probs=20.2
Q ss_pred HHHHHHHHHhcccCCcEEEEecc
Q psy15213 64 SCKILNNLWKMLKPGGKLLFVTC 86 (139)
Q Consensus 64 Q~~lL~~a~~~lk~gG~lvYsTC 86 (139)
+..++.+..+.|||||.++.+.-
T Consensus 143 ~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 143 RQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred HHHHHHHHHHhcCCCCEEEEEEe
Confidence 46889999999999999999873
No 143
>KOG1271|consensus
Probab=61.05 E-value=11 Score=30.04 Aligned_cols=28 Identities=32% Similarity=0.634 Sum_probs=21.1
Q ss_pred HHHHHhcccCCcEEEEeccCCCccccHH
Q psy15213 68 LNNLWKMLKPGGKLLFVTCSLWFEESEE 95 (139)
Q Consensus 68 L~~a~~~lk~gG~lvYsTCS~~~~ENE~ 95 (139)
+...-++|+|||+.|..+|-+...|-.+
T Consensus 164 ~d~v~~ll~~~gifvItSCN~T~dELv~ 191 (227)
T KOG1271|consen 164 LDSVEKLLSPGGIFVITSCNFTKDELVE 191 (227)
T ss_pred hhhHhhccCCCcEEEEEecCccHHHHHH
Confidence 3344458899999999999999864333
No 144
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=60.70 E-value=23 Score=30.66 Aligned_cols=62 Identities=15% Similarity=0.196 Sum_probs=41.4
Q ss_pred cccccCccccccCC-CCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEecc
Q psy15213 11 INKKTNNRFRFYKN-KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86 (139)
Q Consensus 11 ~~~~~~~~~~~~~~-~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTC 86 (139)
|.....|.....+. +.+|.|+.+||.. .+-.+-.....++.++....-+.++.-++.|++|-
T Consensus 283 I~f~~~d~~~l~~~~~~~gvvI~NPPYG--------------eRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 283 IEFKQADATDLKEPLEEYGVVISNPPYG--------------ERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred EEEEEcchhhCCCCCCcCCEEEeCCCcc--------------hhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 33445555555554 6899999999932 11122245566888888888888887778888653
No 145
>KOG1099|consensus
Probab=59.57 E-value=26 Score=28.85 Aligned_cols=47 Identities=23% Similarity=0.446 Sum_probs=31.5
Q ss_pred ccCCCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHH----hcccCCcEEE
Q psy15213 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLW----KMLKPGGKLL 82 (139)
Q Consensus 21 ~~~~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~----~~lk~gG~lv 82 (139)
.+.+++.|.|++|-- ||+.- ..++.++ .|.+||..|+ -.|||||..|
T Consensus 110 hfggekAdlVvcDGA----------PDvTG---lHd~DEy--~Q~qLllaAl~i~t~Vlk~Gg~FV 160 (294)
T KOG1099|consen 110 HFGGEKADLVVCDGA----------PDVTG---LHDLDEY--VQAQLLLAALNIATCVLKPGGSFV 160 (294)
T ss_pred HhCCCCccEEEeCCC----------CCccc---cccHHHH--HHHHHHHHHHHHHhheecCCCeee
Confidence 455789999999954 45432 2445554 4556666666 4789999876
No 146
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=58.12 E-value=17 Score=31.89 Aligned_cols=52 Identities=23% Similarity=0.492 Sum_probs=31.4
Q ss_pred cCccccccC--CCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEE
Q psy15213 15 TNNRFRFYK--NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83 (139)
Q Consensus 15 ~~~~~~~~~--~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvY 83 (139)
..|...|.. ++.||.|++|-| +|+.. .--+-++.-...++.+ .|+++|++|-
T Consensus 352 ~dDAf~wlr~a~~~fD~vIVDl~---------DP~tp-----s~~rlYS~eFY~ll~~---~l~e~Gl~Vv 405 (508)
T COG4262 352 NDDAFQWLRTAADMFDVVIVDLP---------DPSTP-----SIGRLYSVEFYRLLSR---HLAETGLMVV 405 (508)
T ss_pred eccHHHHHHhhcccccEEEEeCC---------CCCCc-----chhhhhhHHHHHHHHH---hcCcCceEEE
Confidence 446667744 579999999998 44422 1112233333444444 6789998775
No 147
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=58.00 E-value=10 Score=29.96 Aligned_cols=21 Identities=24% Similarity=0.710 Sum_probs=18.2
Q ss_pred HHHHHHHHhcccCCcEEEEec
Q psy15213 65 CKILNNLWKMLKPGGKLLFVT 85 (139)
Q Consensus 65 ~~lL~~a~~~lk~gG~lvYsT 85 (139)
.+++..+.+.|||||+++.+.
T Consensus 163 ~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 163 ERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred HHHHHHHHHHcCCCcEEEEEE
Confidence 467899999999999999864
No 148
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=57.32 E-value=26 Score=28.22 Aligned_cols=20 Identities=30% Similarity=0.439 Sum_probs=16.5
Q ss_pred HHHHHHHHHhcccCCcEEEE
Q psy15213 64 SCKILNNLWKMLKPGGKLLF 83 (139)
Q Consensus 64 Q~~lL~~a~~~lk~gG~lvY 83 (139)
...++.+..+.|+|||++++
T Consensus 202 ~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 202 IPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred HHHHHHHHHHhcCCCcEEEE
Confidence 45778888999999999665
No 149
>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO). ; PDB: 2ZPA_B.
Probab=57.16 E-value=17 Score=24.88 Aligned_cols=42 Identities=19% Similarity=0.174 Sum_probs=26.6
Q ss_pred CCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCCc
Q psy15213 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWF 90 (139)
Q Consensus 24 ~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~ 90 (139)
+..||.+++|+-. . +.-+.|.++...++-||.|+..+..+..
T Consensus 9 G~e~~~~i~d~~~--------------g-----------~~pnal~a~~gtv~gGGllill~p~~~~ 50 (92)
T PF08351_consen 9 GQEFDLLIFDAFE--------------G-----------FDPNALAALAGTVRGGGLLILLLPPWES 50 (92)
T ss_dssp T--BSSEEEE-SS----------------------------HHHHHHHHTTB-TT-EEEEEES-GGG
T ss_pred CCccCEEEEEccC--------------C-----------CCHHHHHHHhcceecCeEEEEEcCCHHH
Confidence 4689999999961 1 2256678888999999999998887654
No 150
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=57.04 E-value=12 Score=29.94 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhcccCCcEEEEec
Q psy15213 63 YSCKILNNLWKMLKPGGKLLFVT 85 (139)
Q Consensus 63 ~Q~~lL~~a~~~lk~gG~lvYsT 85 (139)
-...+|+++.+.|||||.++.+.
T Consensus 134 d~~~~l~~i~r~LkPGG~lvi~d 156 (263)
T PTZ00098 134 DKKKLFEKCYKWLKPNGILLITD 156 (263)
T ss_pred HHHHHHHHHHHHcCCCcEEEEEE
Confidence 35688999999999999999764
No 151
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=56.75 E-value=36 Score=27.74 Aligned_cols=80 Identities=20% Similarity=0.277 Sum_probs=43.7
Q ss_pred cccCC--CCcCEEEEcCCCCCccccccCCCCCccCCH-----hHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCCccc
Q psy15213 20 RFYKN--KYFDRILADLPCTGSGVVRRNPDIPWLRRK-----NDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEE 92 (139)
Q Consensus 20 ~~~~~--~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~-----~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~E 92 (139)
.|++. ++||.|+.-||.=..-.....|+... ..+ ..- .--...++++..+..++++||.++. -++.. .
T Consensus 168 dlf~~~~~~fDlIVsNPPYip~~~~~~~~~~~~-~EP~~Al~~g~-dGl~~~~~i~~~a~~~l~~~g~l~l-e~g~~--q 242 (280)
T COG2890 168 DLFEPLRGKFDLIVSNPPYIPAEDPELLPEVVR-YEPLLALVGGG-DGLEVYRRILGEAPDILKPGGVLIL-EIGLT--Q 242 (280)
T ss_pred ecccccCCceeEEEeCCCCCCCcccccChhhhc-cCHHHHHccCc-cHHHHHHHHHHhhHHHcCCCcEEEE-EECCC--c
Confidence 35442 37999999999654431111121110 000 001 2344778999999999999888765 23322 2
Q ss_pred cHHHHHHHHhhC
Q psy15213 93 SEEQAIIFSKNH 104 (139)
Q Consensus 93 NE~vV~~~l~~~ 104 (139)
.+.|.+.+.+..
T Consensus 243 ~~~v~~~~~~~~ 254 (280)
T COG2890 243 GEAVKALFEDTG 254 (280)
T ss_pred HHHHHHHHHhcC
Confidence 344444444443
No 152
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=56.52 E-value=11 Score=31.37 Aligned_cols=26 Identities=23% Similarity=0.156 Sum_probs=20.9
Q ss_pred HHHHHHHhcccCCcEEEEeccCCCcc
Q psy15213 66 KILNNLWKMLKPGGKLLFVTCSLWFE 91 (139)
Q Consensus 66 ~lL~~a~~~lk~gG~lvYsTCS~~~~ 91 (139)
+.|.++.+.|||||.||.+|..+...
T Consensus 206 ~~L~el~r~LkpGG~Lvletl~i~g~ 231 (314)
T TIGR00452 206 EHLKQLKHQLVIKGELVLETLVIDGD 231 (314)
T ss_pred HHHHHHHHhcCCCCEEEEEEEEecCc
Confidence 46888899999999999988655433
No 153
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=56.51 E-value=23 Score=27.01 Aligned_cols=10 Identities=30% Similarity=0.454 Sum_probs=9.2
Q ss_pred CcCEEEEcCC
Q psy15213 26 YFDRILADLP 35 (139)
Q Consensus 26 ~fD~ILlDaP 35 (139)
.||.|++|||
T Consensus 121 ~~dvv~~DPP 130 (189)
T TIGR00095 121 FDNVIYLDPP 130 (189)
T ss_pred CceEEEECcC
Confidence 4899999999
No 154
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=55.35 E-value=18 Score=26.00 Aligned_cols=29 Identities=21% Similarity=0.449 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHhcccCCcEEEEeccC
Q psy15213 59 KLSKYSCKILNNLWKMLKPGGKLLFVTCS 87 (139)
Q Consensus 59 ~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS 87 (139)
.-+.-|.+++..|++.++-.|+++|.-|+
T Consensus 31 k~a~~~Lk~~~~~A~~vkG~gT~~~vdCg 59 (112)
T cd03067 31 KSAEALLKLLSDVAQAVKGQGTIAWIDCG 59 (112)
T ss_pred hhHHHHHHHHHHHHHHhcCceeEEEEecC
Confidence 34566788999999999999999999998
No 155
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=55.15 E-value=25 Score=29.64 Aligned_cols=40 Identities=25% Similarity=0.356 Sum_probs=31.2
Q ss_pred HHHHHHHHhcccCCcEEEEeccCCCccccHHHHHHHHhhCCC
Q psy15213 65 CKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 106 (139)
Q Consensus 65 ~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~l~~~~~ 106 (139)
++.|......+.|||+|||+.=-+||. -+.|+++|..|.+
T Consensus 229 ~~sl~gl~~al~pgG~lIyTgQPwHPQ--le~IAr~LtsHr~ 268 (311)
T PF12147_consen 229 RRSLAGLARALEPGGYLIYTGQPWHPQ--LEMIARVLTSHRD 268 (311)
T ss_pred HHHHHHHHHHhCCCcEEEEcCCCCCcc--hHHHHHHHhcccC
Confidence 445666677889999999988888884 3568999988753
No 156
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=54.86 E-value=1.1e+02 Score=24.30 Aligned_cols=95 Identities=17% Similarity=0.181 Sum_probs=52.4
Q ss_pred CCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCCccccHHHHHHHHhh
Q psy15213 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKN 103 (139)
Q Consensus 24 ~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~l~~ 103 (139)
...+|.|+.|+- |.+.-.++. +-.....+=...+.-|...|+|||..|- ....-++++.+-+.+.+
T Consensus 109 ~~~~DvV~sD~a----------p~~~g~~~~-Dh~r~~~L~~~a~~~a~~vL~~~G~fv~---K~fqg~~~~~~l~~~~~ 174 (205)
T COG0293 109 GAPVDVVLSDMA----------PNTSGNRSV-DHARSMYLCELALEFALEVLKPGGSFVA---KVFQGEDFEDLLKALRR 174 (205)
T ss_pred CCCcceEEecCC----------CCcCCCccc-cHHHHHHHHHHHHHHHHHeeCCCCeEEE---EEEeCCCHHHHHHHHHH
Confidence 345799999965 332222222 2222333444556777889999998864 45666666666666665
Q ss_pred CCCcEEecCCCcccCCCCCCCCCCcEEEEEEEec
Q psy15213 104 HKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 137 (139)
Q Consensus 104 ~~~~~~~~~~~~~~P~~~~~~~~~GfFia~l~k~ 137 (139)
+-......-|...-+ .-.+=|++|+..|.
T Consensus 175 ~F~~v~~~KP~aSR~-----~S~E~y~v~~~~~~ 203 (205)
T COG0293 175 LFRKVKIFKPKASRK-----RSREIYLVAKGFKG 203 (205)
T ss_pred hhceeEEecCccccC-----CCceEEEEEecccc
Confidence 423222211211122 33477777776544
No 157
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=54.72 E-value=13 Score=28.42 Aligned_cols=36 Identities=25% Similarity=0.386 Sum_probs=24.5
Q ss_pred HHHHHHHHhcccCCcEEEEeccCCCccccHHHHHHHHhhC
Q psy15213 65 CKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH 104 (139)
Q Consensus 65 ~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~l~~~ 104 (139)
..++..+.++|+|||+++..-... .+..+..+.+..
T Consensus 125 ~~~l~~~~~~LkpGG~lv~~~~~~----~~~~l~~~~~~~ 160 (187)
T PRK00107 125 SDLVELCLPLLKPGGRFLALKGRD----PEEEIAELPKAL 160 (187)
T ss_pred HHHHHHHHHhcCCCeEEEEEeCCC----hHHHHHHHHHhc
Confidence 357888999999999999975553 333444444433
No 158
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=54.15 E-value=16 Score=29.60 Aligned_cols=29 Identities=17% Similarity=0.346 Sum_probs=22.4
Q ss_pred HHHHHHHHhcccCCcEEEEeccCCCcccc
Q psy15213 65 CKILNNLWKMLKPGGKLLFVTCSLWFEES 93 (139)
Q Consensus 65 ~~lL~~a~~~lk~gG~lvYsTCS~~~~EN 93 (139)
.++|+++.+.|+|||+++.....+...++
T Consensus 234 ~~il~~~~~~L~pgG~l~i~d~~~~~~~~ 262 (306)
T TIGR02716 234 TIMCKKAFDAMRSGGRLLILDMVIDDPEN 262 (306)
T ss_pred HHHHHHHHHhcCCCCEEEEEEeccCCCCC
Confidence 67899999999999999887654544333
No 159
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=53.96 E-value=22 Score=27.72 Aligned_cols=55 Identities=24% Similarity=0.302 Sum_probs=30.3
Q ss_pred cccccCccccccCCCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEec
Q psy15213 11 INKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 85 (139)
Q Consensus 11 ~~~~~~~~~~~~~~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsT 85 (139)
++-...|...|.-.+.||.|+...- + .-..++.+ ..++.+.-+.++|||+.++-|
T Consensus 79 i~~~~~Dl~~~~~~~~yD~I~st~v------~-------~fL~~~~~-------~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 79 IRTRVADLNDFDFPEEYDFIVSTVV------F-------MFLQRELR-------PQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp EEEEE-BGCCBS-TTTEEEEEEESS------G-------GGS-GGGH-------HHHHHHHHHTEEEEEEEEEEE
T ss_pred eEEEEecchhccccCCcCEEEEEEE------e-------ccCCHHHH-------HHHHHHHHhhcCCcEEEEEEE
Confidence 3333445544544568999875422 1 11222222 345666667899999999843
No 160
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=53.64 E-value=11 Score=29.29 Aligned_cols=26 Identities=31% Similarity=0.549 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhcccCCcEEEEecc
Q psy15213 61 SKYSCKILNNLWKMLKPGGKLLFVTC 86 (139)
Q Consensus 61 ~~~Q~~lL~~a~~~lk~gG~lvYsTC 86 (139)
...|.+++.+....|+|||.|+-...
T Consensus 151 ~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 151 PETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 45679999999999999999998654
No 161
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=53.44 E-value=16 Score=27.84 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=19.6
Q ss_pred HHHHHHHHHhcccCCcEEEEecc
Q psy15213 64 SCKILNNLWKMLKPGGKLLFVTC 86 (139)
Q Consensus 64 Q~~lL~~a~~~lk~gG~lvYsTC 86 (139)
...++.++.++|||||.++.++-
T Consensus 83 ~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 83 KMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred HHHHHHHHHHHcCCCCEEEEEEc
Confidence 46789999999999999998653
No 162
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=52.90 E-value=28 Score=25.90 Aligned_cols=23 Identities=39% Similarity=0.830 Sum_probs=19.4
Q ss_pred HHHHHHHhcccCCcEEEEeccCC
Q psy15213 66 KILNNLWKMLKPGGKLLFVTCSL 88 (139)
Q Consensus 66 ~lL~~a~~~lk~gG~lvYsTCS~ 88 (139)
.+|+++.++|+|||+++..+.+.
T Consensus 124 ~~l~~~~~~L~~gG~l~~~~~~~ 146 (223)
T TIGR01934 124 KALREMYRVLKPGGRLVILEFSK 146 (223)
T ss_pred HHHHHHHHHcCCCcEEEEEEecC
Confidence 57899999999999999876653
No 163
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=52.61 E-value=14 Score=31.11 Aligned_cols=39 Identities=26% Similarity=0.360 Sum_probs=29.2
Q ss_pred HHHHHHHHhcccCCcEEEEeccCCCccccHHHHHHHHhhCCC
Q psy15213 65 CKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 106 (139)
Q Consensus 65 ~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~l~~~~~ 106 (139)
.+.|.+|..+|+|||+|+-.| ++.-|+ ..|++|..+...
T Consensus 224 ~~~L~~a~~~L~~gGRl~VIs--FHSLED-RiVK~ff~~~s~ 262 (314)
T COG0275 224 EEALEAALDLLKPGGRLAVIS--FHSLED-RIVKNFFKELSK 262 (314)
T ss_pred HHHHHHHHHhhCCCcEEEEEE--ecchHH-HHHHHHHHHhcc
Confidence 577899999999999987643 555443 677888877644
No 164
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=51.84 E-value=11 Score=31.55 Aligned_cols=38 Identities=26% Similarity=0.340 Sum_probs=28.5
Q ss_pred HHHHHHHHhcccCCcEEEEeccCCCccccHHHHHHHHhhCC
Q psy15213 65 CKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 105 (139)
Q Consensus 65 ~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~l~~~~ 105 (139)
...|.+|..+|+|||+|+-- |+|.-|+. .|++++.+..
T Consensus 221 ~~~L~~a~~~L~~gGrl~VI--SFHSLEDR-iVK~~f~~~~ 258 (310)
T PF01795_consen 221 ERGLEAAPDLLKPGGRLVVI--SFHSLEDR-IVKQFFRELA 258 (310)
T ss_dssp HHHHHHHHHHEEEEEEEEEE--ESSHHHHH-HHHHHHHCCS
T ss_pred HHHHHHHHHHhcCCcEEEEE--EecchhhH-HHHHHHHHhc
Confidence 46788999999999999874 58887764 5566666553
No 165
>PLN02244 tocopherol O-methyltransferase
Probab=51.77 E-value=15 Score=30.51 Aligned_cols=23 Identities=30% Similarity=0.632 Sum_probs=19.4
Q ss_pred HHHHHHHHhcccCCcEEEEeccC
Q psy15213 65 CKILNNLWKMLKPGGKLLFVTCS 87 (139)
Q Consensus 65 ~~lL~~a~~~lk~gG~lvYsTCS 87 (139)
.+.+..+.+.|||||+++.+++.
T Consensus 203 ~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 203 RKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred HHHHHHHHHHcCCCcEEEEEEec
Confidence 46788889999999999988754
No 166
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=51.20 E-value=20 Score=28.78 Aligned_cols=25 Identities=36% Similarity=0.519 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhcccCCcEEEEecc
Q psy15213 62 KYSCKILNNLWKMLKPGGKLLFVTC 86 (139)
Q Consensus 62 ~~Q~~lL~~a~~~lk~gG~lvYsTC 86 (139)
..|.+++.+..+.|+|||.|+....
T Consensus 219 ~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 219 PTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEECc
Confidence 4567899999999999999998654
No 167
>KOG1270|consensus
Probab=51.05 E-value=14 Score=30.73 Aligned_cols=28 Identities=32% Similarity=0.558 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHhcccCCcEEEEec
Q psy15213 57 IKKLSKYSCKILNNLWKMLKPGGKLLFVT 85 (139)
Q Consensus 57 ~~~l~~~Q~~lL~~a~~~lk~gG~lvYsT 85 (139)
++...+. .+++...+++|||||+|+.+|
T Consensus 168 leHV~dp-~~~l~~l~~~lkP~G~lfitt 195 (282)
T KOG1270|consen 168 LEHVKDP-QEFLNCLSALLKPNGRLFITT 195 (282)
T ss_pred HHHHhCH-HHHHHHHHHHhCCCCceEeee
Confidence 3444444 477888999999999999987
No 168
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=50.82 E-value=18 Score=28.83 Aligned_cols=23 Identities=22% Similarity=0.632 Sum_probs=19.7
Q ss_pred HHHHHHHHhcccCCcEEEEeccC
Q psy15213 65 CKILNNLWKMLKPGGKLLFVTCS 87 (139)
Q Consensus 65 ~~lL~~a~~~lk~gG~lvYsTCS 87 (139)
.+.|.++.+.|||||+++.++.+
T Consensus 162 ~~~l~ei~rvLkpGG~l~i~d~~ 184 (261)
T PLN02233 162 LKAMQEMYRVLKPGSRVSILDFN 184 (261)
T ss_pred HHHHHHHHHHcCcCcEEEEEECC
Confidence 56789999999999999987665
No 169
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=50.81 E-value=21 Score=27.80 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=18.9
Q ss_pred HHHHHHHHhcccCCcEEEEeccCC
Q psy15213 65 CKILNNLWKMLKPGGKLLFVTCSL 88 (139)
Q Consensus 65 ~~lL~~a~~~lk~gG~lvYsTCS~ 88 (139)
.+.+.+..++|||||++++.|=+.
T Consensus 132 ~~~~~~l~~lLkpgG~~ll~~~~~ 155 (213)
T TIGR03840 132 QRYAAHLLALLPPGARQLLITLDY 155 (213)
T ss_pred HHHHHHHHHHcCCCCeEEEEEEEc
Confidence 457788888999999877776655
No 170
>TIGR00057 Sua5/YciO/YrdC/YwlC family protein. partial match to sua5, which is involved in regulation of translation initiation. 3' end of sua5 has matches to sua5, BS3690, and weakly to AF0781 and BB0734.
Probab=50.39 E-value=23 Score=27.35 Aligned_cols=37 Identities=16% Similarity=0.296 Sum_probs=30.1
Q ss_pred HHHHHHHhcccCCcEEEEeccCCC----ccccHHHHHHHHh
Q psy15213 66 KILNNLWKMLKPGGKLLFVTCSLW----FEESEEQAIIFSK 102 (139)
Q Consensus 66 ~lL~~a~~~lk~gG~lvYsTCS~~----~~ENE~vV~~~l~ 102 (139)
+.+.+|.+.|+.||.++|-|=|.. ...|++-|+++.+
T Consensus 9 ~~i~~a~~~L~~G~ii~~PTdTvYgL~~~~~~~~av~ri~~ 49 (201)
T TIGR00057 9 RGIEQAVKILRKGGIVVYPTDTVYGIGADALDEDAVRRLYR 49 (201)
T ss_pred HHHHHHHHHHHCCCEEEEeCCCHHHhhcCCCCHHHHHHHHH
Confidence 457888999999999999998875 3578888888854
No 171
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=49.77 E-value=21 Score=29.46 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhcccCCcEEEEec
Q psy15213 62 KYSCKILNNLWKMLKPGGKLLFVT 85 (139)
Q Consensus 62 ~~Q~~lL~~a~~~lk~gG~lvYsT 85 (139)
..|.+++.+....|+|||.|+...
T Consensus 239 ~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 239 TTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEeC
Confidence 468999999999999999998755
No 172
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=49.68 E-value=21 Score=26.19 Aligned_cols=23 Identities=17% Similarity=0.626 Sum_probs=19.1
Q ss_pred HHHHHHHHhcccCCcEEEEeccC
Q psy15213 65 CKILNNLWKMLKPGGKLLFVTCS 87 (139)
Q Consensus 65 ~~lL~~a~~~lk~gG~lvYsTCS 87 (139)
.+.|++..+.|||||.++....+
T Consensus 61 ~~~l~ei~rvLkpGG~l~i~d~~ 83 (160)
T PLN02232 61 LRAMKEMYRVLKPGSRVSILDFN 83 (160)
T ss_pred HHHHHHHHHHcCcCeEEEEEECC
Confidence 57788899999999999876555
No 173
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=48.61 E-value=92 Score=27.47 Aligned_cols=77 Identities=18% Similarity=0.234 Sum_probs=50.7
Q ss_pred CcCEEEEcCC--CCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCCccccHHHHHHHHhh
Q psy15213 26 YFDRILADLP--CTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKN 103 (139)
Q Consensus 26 ~fD~ILlDaP--CSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~l~~ 103 (139)
..|.+++=+| +++ .+.||+.+. ..-.+...+.|++|-.+|+ --|..|--.|+++.++++.
T Consensus 84 ~~dv~iI~VPTPl~~----~~~pDls~v-------------~~aa~sIa~~L~kG~LVIl-EST~~PGTTe~v~~plle~ 145 (436)
T COG0677 84 ECDVFIICVPTPLKK----YREPDLSYV-------------ESAARSIAPVLKKGDLVIL-ESTTPPGTTEEVVKPLLEE 145 (436)
T ss_pred cCCEEEEEecCCcCC----CCCCChHHH-------------HHHHHHHHHhcCCCCEEEE-ecCCCCCcHHHHHHHHHhh
Confidence 5676666555 444 255665543 2234445668898876666 5677899999999999998
Q ss_pred CCC------cEEecCCCcccCCC
Q psy15213 104 HKD------SIRLNSPGQLLPTV 120 (139)
Q Consensus 104 ~~~------~~~~~~~~~~~P~~ 120 (139)
.++ |-+.-.|.|..|+.
T Consensus 146 ~sgL~~~~Df~laysPERv~PG~ 168 (436)
T COG0677 146 RSGLKFGEDFYLAYSPERVLPGN 168 (436)
T ss_pred cCCCcccceeeEeeCccccCCCc
Confidence 543 44444567888865
No 174
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=48.60 E-value=99 Score=25.65 Aligned_cols=59 Identities=15% Similarity=0.232 Sum_probs=36.5
Q ss_pred CCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCCccccHHHHHHHHhh
Q psy15213 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKN 103 (139)
Q Consensus 24 ~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~l~~ 103 (139)
+++=-.||+||| +. .+.+...+... |+.+.+-. ++|+... +.|.-+-+.++.|++.
T Consensus 154 ~erRglVLIDPP--------------fE-~~~eY~rvv~~----l~~~~kRf-~~g~yai----WYPik~r~~~~~f~~~ 209 (279)
T COG2961 154 KERRGLVLIDPP--------------FE-LKDEYQRVVEA----LAEAYKRF-ATGTYAI----WYPIKDRRQIRRFLRA 209 (279)
T ss_pred CCcceEEEeCCC--------------cc-cccHHHHHHHH----HHHHHHhh-cCceEEE----EEeecchHHHHHHHHH
Confidence 344568999999 22 22344444433 34444444 3555433 7899999999999887
Q ss_pred CCC
Q psy15213 104 HKD 106 (139)
Q Consensus 104 ~~~ 106 (139)
...
T Consensus 210 L~~ 212 (279)
T COG2961 210 LEA 212 (279)
T ss_pred Hhh
Confidence 643
No 175
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=48.60 E-value=20 Score=29.96 Aligned_cols=36 Identities=25% Similarity=0.245 Sum_probs=27.1
Q ss_pred HHHHHHHHhcccCCcEEEEeccCCCccccHHHHHHHHhh
Q psy15213 65 CKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKN 103 (139)
Q Consensus 65 ~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~l~~ 103 (139)
.+.|..|..+|+|||+|+- =|+|.-|+--| +++.+.
T Consensus 220 ~~~L~~~~~~L~~gGrl~V--ISfHSLEDRiV-K~~f~~ 255 (305)
T TIGR00006 220 EEALQFAPNLLAPGGRLSI--ISFHSLEDRIV-KNFFRE 255 (305)
T ss_pred HHHHHHHHHHhcCCCEEEE--EecCcHHHHHH-HHHHHH
Confidence 5678899999999999976 45888876555 555444
No 176
>KOG3350|consensus
Probab=48.59 E-value=4.1 Score=32.15 Aligned_cols=24 Identities=33% Similarity=0.308 Sum_probs=16.0
Q ss_pred ccccccCccccccCCCCcCEEEEcCC
Q psy15213 10 DINKKTNNRFRFYKNKYFDRILADLP 35 (139)
Q Consensus 10 ~~~~~~~~~~~~~~~~~fD~ILlDaP 35 (139)
|+|....-+.... ..||+|+.|||
T Consensus 121 DyN~p~dlp~~lk--~~fdiivaDPP 144 (217)
T KOG3350|consen 121 DYNCPLDLPDELK--AHFDIIVADPP 144 (217)
T ss_pred ccCCCCCCHHHHH--hcccEEEeCCc
Confidence 4444444444443 46999999999
No 177
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=48.48 E-value=30 Score=29.74 Aligned_cols=47 Identities=19% Similarity=0.315 Sum_probs=30.7
Q ss_pred CCCcC-EEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCCcc
Q psy15213 24 NKYFD-RILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFE 91 (139)
Q Consensus 24 ~~~fD-~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~ 91 (139)
.+.+| .||+|.. .|. ++ ....+++....+.++|||+++|=|=...+.
T Consensus 293 ~~s~~~~vL~D~~-------------Dwm-~~-------~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~~ 340 (380)
T PF11899_consen 293 PGSFDRFVLSDHM-------------DWM-DP-------EQLNEEWQELARTARPGARVLWRSAAVPPW 340 (380)
T ss_pred CCCeeEEEecchh-------------hhC-CH-------HHHHHHHHHHHHHhCCCCEEEEeeCCCCCC
Confidence 46776 6788888 343 33 333455555666779999999966655543
No 178
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=47.73 E-value=22 Score=26.83 Aligned_cols=23 Identities=35% Similarity=0.586 Sum_probs=19.9
Q ss_pred HHHHHHHHhcccCCcEEEEeccC
Q psy15213 65 CKILNNLWKMLKPGGKLLFVTCS 87 (139)
Q Consensus 65 ~~lL~~a~~~lk~gG~lvYsTCS 87 (139)
..+|.++.+.|++||.++.+++.
T Consensus 129 ~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 129 QAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred HHHHHHHHHhcCCCcEEEEEecC
Confidence 56889999999999999988874
No 179
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=47.57 E-value=19 Score=29.93 Aligned_cols=36 Identities=28% Similarity=0.399 Sum_probs=26.7
Q ss_pred HHHHHHHHhcccCCcEEEEeccCCCccccHHHHHHHHhh
Q psy15213 65 CKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKN 103 (139)
Q Consensus 65 ~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~l~~ 103 (139)
..+|.+|..+|+|||+|+-- |+|.-|+--| +++.++
T Consensus 216 ~~~L~~~~~~L~~gGrl~vi--sfHSlEDriV-K~~f~~ 251 (296)
T PRK00050 216 ERALEAALDLLKPGGRLAVI--SFHSLEDRIV-KRFFRE 251 (296)
T ss_pred HHHHHHHHHHhcCCCEEEEE--ecCcHHHHHH-HHHHHH
Confidence 46788999999999999764 5777776544 555544
No 180
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=47.56 E-value=1.3e+02 Score=24.93 Aligned_cols=77 Identities=12% Similarity=-0.044 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCCccc------------cHHHHHHHHhhCCCcEEecC---CCcccCC
Q psy15213 55 NDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEE------------SEEQAIIFSKNHKDSIRLNS---PGQLLPT 119 (139)
Q Consensus 55 ~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~E------------NE~vV~~~l~~~~~~~~~~~---~~~~~P~ 119 (139)
.++.-+..--..++..+..+|+|||.+.||.-+.--+- .|..|...|+.. +++.+.. +.|.--+
T Consensus 195 aDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~-Gl~~i~~~~ttiR~d~g 273 (287)
T COG4976 195 ADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAAS-GLEVIAIEDTTIRRDAG 273 (287)
T ss_pred hhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhc-CceEEEeecccchhhcC
Confidence 34444444556678889999999999999988776542 355566666654 4443332 2232222
Q ss_pred CCCCCCCCcEEEEEEE
Q psy15213 120 VNKKQDYDGFFYSLFQ 135 (139)
Q Consensus 120 ~~~~~~~~GfFia~l~ 135 (139)
. .-..+.|||+.+
T Consensus 274 ~---pv~G~L~iark~ 286 (287)
T COG4976 274 E---PVPGILVIARKK 286 (287)
T ss_pred C---CCCCceEEEecC
Confidence 2 334678888754
No 181
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=47.47 E-value=21 Score=29.26 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhcccCCcEEEEe
Q psy15213 61 SKYSCKILNNLWKMLKPGGKLLFV 84 (139)
Q Consensus 61 ~~~Q~~lL~~a~~~lk~gG~lvYs 84 (139)
...|.+++..-...|+|||.|+-.
T Consensus 217 ~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 217 EETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEc
Confidence 457899999999999999999873
No 182
>PRK06922 hypothetical protein; Provisional
Probab=47.39 E-value=38 Score=31.48 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhcccCCcEEEEecc
Q psy15213 63 YSCKILNNLWKMLKPGGKLLFVTC 86 (139)
Q Consensus 63 ~Q~~lL~~a~~~lk~gG~lvYsTC 86 (139)
...++|+++.+.|||||+++.+.=
T Consensus 515 dl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 515 VIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HHHHHHHHHHHHcCCCcEEEEEeC
Confidence 457788999999999999998643
No 183
>KOG3115|consensus
Probab=47.15 E-value=28 Score=28.16 Aligned_cols=73 Identities=21% Similarity=0.231 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhcccCCcEEEEeccCCCccccHHHHHHHHhhCCCcEEecCC-------Cccc-----CCCCCCCCCCcEE
Q psy15213 63 YSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSP-------GQLL-----PTVNKKQDYDGFF 130 (139)
Q Consensus 63 ~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~l~~~~~~~~~~~~-------~~~~-----P~~~~~~~~~GfF 130 (139)
.+..++..-.-+|++||.+.+.|= ..|--+-....+++||-++....+ ..++ -+.......+.=|
T Consensus 161 i~~~l~~eyay~l~~gg~~ytitD---v~elh~wm~~~~e~hplfe~lt~ee~~~d~~v~~~~~~teeg~kv~r~~g~~f 237 (249)
T KOG3115|consen 161 ITSTLLSEYAYVLREGGILYTITD---VKELHEWMVKHLEEHPLFERLTEEEEENDPCVELLSNATEEGKKVARNGGKKF 237 (249)
T ss_pred echhHHHHHHhhhhcCceEEEEee---HHHHHHHHHHHHHhCcHhhhcchhhhcCCcchhhhhhhhhhcccccccCCcee
Confidence 456678888889999999988652 233333344556677766554322 0000 0101234456779
Q ss_pred EEEEEecC
Q psy15213 131 YSLFQKRK 138 (139)
Q Consensus 131 ia~l~k~~ 138 (139)
+|+|++.+
T Consensus 238 ~a~f~r~~ 245 (249)
T KOG3115|consen 238 VAVFRRIP 245 (249)
T ss_pred eeeeeecc
Confidence 99999864
No 184
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=47.13 E-value=20 Score=25.74 Aligned_cols=29 Identities=17% Similarity=0.419 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHHHhcccCCcEEEE
Q psy15213 55 NDIKKLSKYSCKILNNLWKMLKPGGKLLF 83 (139)
Q Consensus 55 ~~~~~l~~~Q~~lL~~a~~~lk~gG~lvY 83 (139)
-++..--..-+.++.+...+|+|||.++-
T Consensus 14 IHLn~GD~Gl~~~f~~~~~~L~pGG~lil 42 (110)
T PF06859_consen 14 IHLNWGDEGLKRFFRRIYSLLRPGGILIL 42 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEecCcCHHHHHHHHHHHHhhCCCCEEEE
Confidence 35666666778899999999999999984
No 185
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=46.69 E-value=20 Score=29.71 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=18.4
Q ss_pred HHHHHHHHhcccCCcEEEEecc
Q psy15213 65 CKILNNLWKMLKPGGKLLFVTC 86 (139)
Q Consensus 65 ~~lL~~a~~~lk~gG~lvYsTC 86 (139)
..+|.++.+.|+|||.+|.+|-
T Consensus 206 ~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 206 LDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred HHHHHHHHHhcCCCcEEEEEEE
Confidence 3578889999999999998763
No 186
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=45.84 E-value=22 Score=27.50 Aligned_cols=22 Identities=23% Similarity=0.537 Sum_probs=19.0
Q ss_pred HHHHHHHHHhcccCCcEEEEec
Q psy15213 64 SCKILNNLWKMLKPGGKLLFVT 85 (139)
Q Consensus 64 Q~~lL~~a~~~lk~gG~lvYsT 85 (139)
..++|.++.+.|+|||.++.+.
T Consensus 140 ~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 140 RIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred HHHHHHHHHHhcCCCeEEEEee
Confidence 3578999999999999998874
No 187
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=45.37 E-value=8 Score=30.29 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=12.6
Q ss_pred cccCCCCcCEEEEcCCC
Q psy15213 20 RFYKNKYFDRILADLPC 36 (139)
Q Consensus 20 ~~~~~~~fD~ILlDaPC 36 (139)
.|.+...||+|++.+-|
T Consensus 135 g~~~~apfD~I~v~~a~ 151 (209)
T PF01135_consen 135 GWPEEAPFDRIIVTAAV 151 (209)
T ss_dssp TTGGG-SEEEEEESSBB
T ss_pred ccccCCCcCEEEEeecc
Confidence 46566789999999873
No 188
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=45.07 E-value=38 Score=29.08 Aligned_cols=24 Identities=33% Similarity=0.621 Sum_probs=19.6
Q ss_pred HHHHHHHHhcccCCcEEEEeccCC
Q psy15213 65 CKILNNLWKMLKPGGKLLFVTCSL 88 (139)
Q Consensus 65 ~~lL~~a~~~lk~gG~lvYsTCS~ 88 (139)
.++|..+.+.|||||+++.++-..
T Consensus 349 ~~~l~~~~r~LkpgG~l~i~~~~~ 372 (475)
T PLN02336 349 PALFRSFFKWLKPGGKVLISDYCR 372 (475)
T ss_pred HHHHHHHHHHcCCCeEEEEEEecc
Confidence 467889999999999999876433
No 189
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=45.01 E-value=23 Score=26.69 Aligned_cols=24 Identities=38% Similarity=0.751 Sum_probs=19.5
Q ss_pred HHHHHHHHhcccCCcEEEEeccCC
Q psy15213 65 CKILNNLWKMLKPGGKLLFVTCSL 88 (139)
Q Consensus 65 ~~lL~~a~~~lk~gG~lvYsTCS~ 88 (139)
..+|.++.++|+|||.+++++-+.
T Consensus 138 ~~~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 138 DKALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred HHHHHHHHHhccCCcEEEEEEecC
Confidence 467889999999999999875443
No 190
>PF13709 DUF4159: Domain of unknown function (DUF4159)
Probab=44.90 E-value=38 Score=26.44 Aligned_cols=52 Identities=19% Similarity=0.084 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHhcccCCcEEEEecc-CCCccccHHHHHHHHhhCCCcEEecCC
Q psy15213 59 KLSKYSCKILNNLWKMLKPGGKLLFVTC-SLWFEESEEQAIIFSKNHKDSIRLNSP 113 (139)
Q Consensus 59 ~l~~~Q~~lL~~a~~~lk~gG~lvYsTC-S~~~~ENE~vV~~~l~~~~~~~~~~~~ 113 (139)
.++..+.+-|++ .|..||.|+..|| -.....++..-..+-+-+|...+.++|
T Consensus 66 ~~s~~e~~~Lr~---Yl~~GGfl~~D~~~~~~~~~~~~~r~~~~~v~p~~~L~~lp 118 (207)
T PF13709_consen 66 PLSDEEIANLRR---YLENGGFLLFDDRDCGSAGFDASFRRLMKRVFPEPPLEPLP 118 (207)
T ss_pred CCCHHHHHHHHH---HHHcCCEEEEECCCcccccccHHHHHHHHHhcCCCCccCCC
Confidence 445555555665 5678999999999 555666665544444445544444443
No 191
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=44.21 E-value=25 Score=31.16 Aligned_cols=29 Identities=17% Similarity=0.077 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhcccCCcEEEEeccCCC
Q psy15213 61 SKYSCKILNNLWKMLKPGGKLLFVTCSLW 89 (139)
Q Consensus 61 ~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~ 89 (139)
.+.-++.+.++.+..+|.-++|++||+-.
T Consensus 70 ~~kL~~~I~~~~~~~~P~~I~V~tTC~~e 98 (513)
T CHL00076 70 QEKVVDNITRKDKEERPDLIVLTPTCTSS 98 (513)
T ss_pred HHHHHHHHHHHHHhcCCCEEEECCCCchh
Confidence 45556667778888899999999999966
No 192
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=43.66 E-value=25 Score=26.35 Aligned_cols=21 Identities=48% Similarity=0.770 Sum_probs=18.0
Q ss_pred HHHHHHHHhcccCCcEEEEec
Q psy15213 65 CKILNNLWKMLKPGGKLLFVT 85 (139)
Q Consensus 65 ~~lL~~a~~~lk~gG~lvYsT 85 (139)
.++|.++.+.|+|||.++.++
T Consensus 115 ~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 115 SQALSELARVLKPGGLLAFST 135 (240)
T ss_pred HHHHHHHHHHcCCCcEEEEEe
Confidence 357889999999999999864
No 193
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=43.50 E-value=19 Score=28.62 Aligned_cols=21 Identities=14% Similarity=0.332 Sum_probs=14.9
Q ss_pred cCcccc-ccCCCCcCEEEEcCC
Q psy15213 15 TNNRFR-FYKNKYFDRILADLP 35 (139)
Q Consensus 15 ~~~~~~-~~~~~~fD~ILlDaP 35 (139)
..|... |.+...||+|++-+-
T Consensus 126 ~gDG~~G~~~~aPyD~I~Vtaa 147 (209)
T COG2518 126 HGDGSKGWPEEAPYDRIIVTAA 147 (209)
T ss_pred ECCcccCCCCCCCcCEEEEeec
Confidence 445554 444589999999876
No 194
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=43.35 E-value=24 Score=29.47 Aligned_cols=21 Identities=19% Similarity=0.331 Sum_probs=18.0
Q ss_pred HHHHHHHHhcccCCcEEEEec
Q psy15213 65 CKILNNLWKMLKPGGKLLFVT 85 (139)
Q Consensus 65 ~~lL~~a~~~lk~gG~lvYsT 85 (139)
..+|....++|||||.++.+|
T Consensus 215 ~~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 215 AEFCKSLSALTIPNGATVLST 235 (322)
T ss_pred HHHHHHHHHHcCCCcEEEEEE
Confidence 467888888999999999886
No 195
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=43.16 E-value=34 Score=27.60 Aligned_cols=95 Identities=21% Similarity=0.215 Sum_probs=48.6
Q ss_pred ccccCccccccC-CCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHH-HHHHHhcccCCcEEEEecc--C
Q psy15213 12 NKKTNNRFRFYK-NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKI-LNNLWKMLKPGGKLLFVTC--S 87 (139)
Q Consensus 12 ~~~~~~~~~~~~-~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~l-L~~a~~~lk~gG~lvYsTC--S 87 (139)
..|++.+..... -+.+|.|..|.. .. .|.+| +.+|-.+||+||.++.+-- |
T Consensus 128 l~DAr~P~~Y~~lv~~VDvI~~DVa---------------Qp----------~Qa~I~~~Na~~fLk~gG~~~i~iKa~s 182 (229)
T PF01269_consen 128 LEDARHPEKYRMLVEMVDVIFQDVA---------------QP----------DQARIAALNARHFLKPGGHLIISIKARS 182 (229)
T ss_dssp ES-TTSGGGGTTTS--EEEEEEE-S---------------ST----------THHHHHHHHHHHHEEEEEEEEEEEEHHH
T ss_pred eccCCChHHhhcccccccEEEecCC---------------Ch----------HHHHHHHHHHHhhccCCcEEEEEEecCc
Confidence 345555554322 247899999988 21 34444 4566679999999887652 2
Q ss_pred C-CccccHHHHHHHHhhCC--CcEEecCCCcccCCCCCCCCCCcEEEEEEEe
Q psy15213 88 L-WFEESEEQAIIFSKNHK--DSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 136 (139)
Q Consensus 88 ~-~~~ENE~vV~~~l~~~~--~~~~~~~~~~~~P~~~~~~~~~GfFia~l~k 136 (139)
+ ...+.+++.+.-.++.. +++.... ..+-|. +...-+++++.+|
T Consensus 183 iD~t~~p~~vf~~e~~~L~~~~~~~~e~-i~LePy----~~dH~~vv~~y~~ 229 (229)
T PF01269_consen 183 IDSTADPEEVFAEEVKKLKEEGFKPLEQ-ITLEPY----ERDHAMVVGRYRK 229 (229)
T ss_dssp H-SSSSHHHHHHHHHHHHHCTTCEEEEE-EE-TTT----STTEEEEEEEE--
T ss_pred ccCcCCHHHHHHHHHHHHHHcCCChheE-eccCCC----CCCcEEEEEEecC
Confidence 3 34455666555554332 3443321 123443 3344566666553
No 196
>KOG4300|consensus
Probab=42.95 E-value=26 Score=28.48 Aligned_cols=20 Identities=40% Similarity=0.981 Sum_probs=17.5
Q ss_pred HHHHHHHHHhcccCCcEEEE
Q psy15213 64 SCKILNNLWKMLKPGGKLLF 83 (139)
Q Consensus 64 Q~~lL~~a~~~lk~gG~lvY 83 (139)
+.+.|++.-++|+|||++++
T Consensus 161 ~~k~L~e~~rlLRpgG~iif 180 (252)
T KOG4300|consen 161 PVKQLNEVRRLLRPGGRIIF 180 (252)
T ss_pred HHHHHHHHHHhcCCCcEEEE
Confidence 46778888899999999988
No 197
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=42.17 E-value=30 Score=26.47 Aligned_cols=24 Identities=29% Similarity=0.521 Sum_probs=20.1
Q ss_pred HHHHHHHHhcccCCcEEEEeccCC
Q psy15213 65 CKILNNLWKMLKPGGKLLFVTCSL 88 (139)
Q Consensus 65 ~~lL~~a~~~lk~gG~lvYsTCS~ 88 (139)
..+|.++.++|+|||+++.+++.-
T Consensus 131 ~~~l~~~~~~L~~gG~l~v~~~~~ 154 (233)
T PRK05134 131 ASFVRACAKLVKPGGLVFFSTLNR 154 (233)
T ss_pred HHHHHHHHHHcCCCcEEEEEecCC
Confidence 367889999999999999987753
No 198
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=41.92 E-value=39 Score=28.66 Aligned_cols=31 Identities=13% Similarity=-0.003 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhcccCCcEEEEeccCCCcc
Q psy15213 61 SKYSCKILNNLWKMLKPGGKLLFVTCSLWFE 91 (139)
Q Consensus 61 ~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~ 91 (139)
...-..+..+.++...+|+.+|-.+|++.|+
T Consensus 12 ~~~~~~~~~~~~k~~~~G~kvvG~~c~y~P~ 42 (380)
T TIGR02263 12 FEDLDFTAAREWKAADPGRIVIAFLPVYAPR 42 (380)
T ss_pred HHHHHHHHhhHHHHhhCCCeEEEEECCCCcH
Confidence 3333334444455444799999999999996
No 199
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional
Probab=41.47 E-value=85 Score=24.94 Aligned_cols=58 Identities=9% Similarity=0.070 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhcccCCcEEEE---eccC-----------CCccccHHHHHHHHhhCCCcEEecCCCcccC
Q psy15213 61 SKYSCKILNNLWKMLKPGGKLLF---VTCS-----------LWFEESEEQAIIFSKNHKDSIRLNSPGQLLP 118 (139)
Q Consensus 61 ~~~Q~~lL~~a~~~lk~gG~lvY---sTCS-----------~~~~ENE~vV~~~l~~~~~~~~~~~~~~~~P 118 (139)
...-++|.+.|++++++|..|.. |||. +...-|--.|...|..+++++++-+.|.+.|
T Consensus 76 ~~~K~~IA~~Aa~lI~~g~tIflD~GtT~~~la~~L~~~~~ltvvTnsl~i~~~l~~~~~~~villGG~~~~ 147 (252)
T PRK10681 76 VEEKRRAAQLAATLVEPNQTLFFDCGTTTPWIIEAIDNELPFTAVCYSLNTFLALQEKPHCRAILCGGEFHA 147 (252)
T ss_pred HHHHHHHHHHHHhhcCCCCEEEEECCccHHHHHHhcCCCCCeEEEECCHHHHHHHhhCCCCEEEEECcEEec
Confidence 34457899999999999988888 5552 2233333445555655666655444444433
No 200
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=41.30 E-value=16 Score=28.08 Aligned_cols=69 Identities=29% Similarity=0.417 Sum_probs=39.2
Q ss_pred cCCCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCCccccHHHHHHHH
Q psy15213 22 YKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFS 101 (139)
Q Consensus 22 ~~~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~l 101 (139)
...+.+|.|.+==| +|.-|.+-.+.++ .|.++|....+.|+|||.|...| .+++..++++
T Consensus 84 ~~~~~v~~i~i~FP---------DPWpK~rH~krRl-----~~~~fl~~~~~~L~~gG~l~~~T------D~~~y~~~~~ 143 (195)
T PF02390_consen 84 FPPGSVDRIYINFP---------DPWPKKRHHKRRL-----VNPEFLELLARVLKPGGELYFAT------DVEEYAEWML 143 (195)
T ss_dssp STTTSEEEEEEES--------------SGGGGGGST-----TSHHHHHHHHHHEEEEEEEEEEE------S-HHHHHHHH
T ss_pred ccCCchheEEEeCC---------CCCcccchhhhhc-----CCchHHHHHHHHcCCCCEEEEEe------CCHHHHHHHH
Confidence 34567888888766 4432221111222 56778888888999999996655 4455555554
Q ss_pred h---h-CCCcEEe
Q psy15213 102 K---N-HKDSIRL 110 (139)
Q Consensus 102 ~---~-~~~~~~~ 110 (139)
+ . ++.++..
T Consensus 144 ~~~~~~~~~f~~~ 156 (195)
T PF02390_consen 144 EQFEESHPGFENI 156 (195)
T ss_dssp HHHHHHSTTEEEE
T ss_pred HHHHhcCcCeEEc
Confidence 3 3 4666655
No 201
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=40.95 E-value=17 Score=30.48 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=19.3
Q ss_pred HHHHHHHHhcccCCcEEEEecc
Q psy15213 65 CKILNNLWKMLKPGGKLLFVTC 86 (139)
Q Consensus 65 ~~lL~~a~~~lk~gG~lvYsTC 86 (139)
+.+|.++...|+|||+++-+|-
T Consensus 166 r~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 166 RQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp HHHHHHHHHTEEEEEEEEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEEec
Confidence 6799999999999999988653
No 202
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=40.74 E-value=67 Score=26.88 Aligned_cols=47 Identities=17% Similarity=0.311 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEeccCCCccccHHHHHHHHhhCCCcEEe
Q psy15213 60 LSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 110 (139)
Q Consensus 60 l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~l~~~~~~~~~ 110 (139)
|++.-.+|......++||||+++.|= +..+. ++.|...++.. ++++.
T Consensus 238 LA~vl~~La~~~~~~lkpgg~lIlSG--Il~~q-~~~V~~a~~~~-gf~v~ 284 (300)
T COG2264 238 LAEVLVELAPDIKRLLKPGGRLILSG--ILEDQ-AESVAEAYEQA-GFEVV 284 (300)
T ss_pred hHHHHHHHHHHHHHHcCCCceEEEEe--ehHhH-HHHHHHHHHhC-CCeEe
Confidence 67777889999999999999999987 66655 44445555432 34443
No 203
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=40.17 E-value=26 Score=28.60 Aligned_cols=50 Identities=18% Similarity=0.187 Sum_probs=34.4
Q ss_pred ccccCccccccCCCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEE
Q psy15213 12 NKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83 (139)
Q Consensus 12 ~~~~~~~~~~~~~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvY 83 (139)
+....|...|.....+|+|.-.|- +.|=+++ -++|.+-+..|.|||.|.-
T Consensus 78 ~f~~aDl~~w~p~~~~dllfaNAv--------------lqWlpdH--------~~ll~rL~~~L~Pgg~LAV 127 (257)
T COG4106 78 TFEEADLRTWKPEQPTDLLFANAV--------------LQWLPDH--------PELLPRLVSQLAPGGVLAV 127 (257)
T ss_pred ceecccHhhcCCCCccchhhhhhh--------------hhhcccc--------HHHHHHHHHhhCCCceEEE
Confidence 344567788888788888776654 2333333 4567777888999999865
No 204
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=39.94 E-value=1e+02 Score=23.56 Aligned_cols=14 Identities=21% Similarity=-0.024 Sum_probs=12.6
Q ss_pred CcCEEEEcCCCCCc
Q psy15213 26 YFDRILADLPCTGS 39 (139)
Q Consensus 26 ~fD~ILlDaPCSg~ 39 (139)
..+.||+|=|++|.
T Consensus 105 ~p~llllDEp~~gl 118 (199)
T cd03283 105 EPVLFLLDEIFKGT 118 (199)
T ss_pred CCeEEEEecccCCC
Confidence 67899999999887
No 205
>PTZ00065 60S ribosomal protein L14; Provisional
Probab=39.26 E-value=19 Score=26.56 Aligned_cols=11 Identities=45% Similarity=0.622 Sum_probs=9.4
Q ss_pred CEEEEcCC-CCC
Q psy15213 28 DRILADLP-CTG 38 (139)
Q Consensus 28 D~ILlDaP-CSg 38 (139)
.+||+|-| |||
T Consensus 35 nRvLVDGP~~tg 46 (130)
T PTZ00065 35 TRVLVDGAFITG 46 (130)
T ss_pred CeEEEeCCCcCC
Confidence 58999999 874
No 206
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=38.75 E-value=61 Score=26.13 Aligned_cols=18 Identities=17% Similarity=0.266 Sum_probs=11.5
Q ss_pred HHHHHHhcccCCcEEEEe
Q psy15213 67 ILNNLWKMLKPGGKLLFV 84 (139)
Q Consensus 67 lL~~a~~~lk~gG~lvYs 84 (139)
.+..+++++++||+++..
T Consensus 242 ~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 242 TVELAIEIAGPRAQLALV 259 (347)
T ss_pred HHHHHHHHhhcCCEEEEE
Confidence 355566677777776653
No 207
>KOG1253|consensus
Probab=38.75 E-value=34 Score=30.73 Aligned_cols=38 Identities=34% Similarity=0.496 Sum_probs=28.5
Q ss_pred CCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCC
Q psy15213 25 KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLW 89 (139)
Q Consensus 25 ~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~ 89 (139)
..||.|=|||= |+- ...|+.|++.++.||.| +.|||=.
T Consensus 182 ~~FDvIDLDPy----Gs~----------------------s~FLDsAvqav~~gGLL-~vT~TD~ 219 (525)
T KOG1253|consen 182 KFFDVIDLDPY----GSP----------------------SPFLDSAVQAVRDGGLL-CVTCTDM 219 (525)
T ss_pred cccceEecCCC----CCc----------------------cHHHHHHHHHhhcCCEE-EEEecch
Confidence 68999999986 110 24589999999988754 6788743
No 208
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=38.23 E-value=58 Score=24.73 Aligned_cols=53 Identities=17% Similarity=0.188 Sum_probs=32.1
Q ss_pred HHHHHHHhcccCCcEEEEeccCCCccccHHHHHHHHhhCC----CcEEecCCCcccCC
Q psy15213 66 KILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK----DSIRLNSPGQLLPT 119 (139)
Q Consensus 66 ~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~l~~~~----~~~~~~~~~~~~P~ 119 (139)
..++...+.+++|-.+|+ -+|+.|.-.++++..+|++.. ++.+.-.|.++.|+
T Consensus 101 ~a~~~i~~~l~~~~lvV~-~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~G 157 (185)
T PF03721_consen 101 SAIESIAPVLRPGDLVVI-ESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLREG 157 (185)
T ss_dssp HHHHHHHHHHCSCEEEEE-SSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------TT
T ss_pred HHHHHHHHHHhhcceEEE-ccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCCC
Confidence 344555566777644444 888999999999999998754 34454445555554
No 209
>PLN02349 glycerol-3-phosphate acyltransferase
Probab=38.17 E-value=84 Score=27.63 Aligned_cols=55 Identities=24% Similarity=0.460 Sum_probs=28.1
Q ss_pred CEEEEcCCCCCccccccCCC---C-CccCCHhHHHHHH-HHHHHHHHHHHhcccCCcEEEE
Q psy15213 28 DRILADLPCTGSGVVRRNPD---I-PWLRRKNDIKKLS-KYSCKILNNLWKMLKPGGKLLF 83 (139)
Q Consensus 28 D~ILlDaPCSg~G~~~r~p~---~-~~~~~~~~~~~l~-~~Q~~lL~~a~~~lk~gG~lvY 83 (139)
|+|+.||=|.---+- ||-= . |+.-+.-.+++.. +.=.+-|+.+..+|+.||.+++
T Consensus 239 drv~~DpL~~PFSmG-rNLlCVySKKhm~d~Pelke~K~~~N~kslk~~~~lL~~Gg~~iw 298 (426)
T PLN02349 239 DRVVTDPLCKPFSMG-RNLICVHSKKHMNDDPELKEMKRKANTRTLKEMALLLREGGQLIW 298 (426)
T ss_pred ceEeeccccCccccC-CceEEEEeccccCCChhhHHHHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 899999999732221 1100 0 0000111122211 1223445566678899999998
No 210
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=37.85 E-value=19 Score=23.89 Aligned_cols=17 Identities=29% Similarity=0.616 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhcccCCc
Q psy15213 63 YSCKILNNLWKMLKPGG 79 (139)
Q Consensus 63 ~Q~~lL~~a~~~lk~gG 79 (139)
.+..++++..++++|||
T Consensus 85 ~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 85 ELEALLRRIARLLRPGG 101 (101)
T ss_dssp HHHHHHHHHHHTEEEEE
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 34788999999999998
No 211
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=37.65 E-value=18 Score=28.68 Aligned_cols=37 Identities=22% Similarity=0.381 Sum_probs=24.0
Q ss_pred HHHHHHHHhcccCCcEEEEeccCCCccccHHHHHHHHhhC
Q psy15213 65 CKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH 104 (139)
Q Consensus 65 ~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~l~~~ 104 (139)
.+.|+...+.|||||+++.-- ++.-+|. .+..+..-+
T Consensus 133 ~~~l~E~~RVLkPGG~l~ile--~~~p~~~-~~~~~~~~y 169 (233)
T PF01209_consen 133 ERALREMYRVLKPGGRLVILE--FSKPRNP-LLRALYKFY 169 (233)
T ss_dssp HHHHHHHHHHEEEEEEEEEEE--EEB-SSH-HHHHHHHH-
T ss_pred HHHHHHHHHHcCCCeEEEEee--ccCCCCc-hhhceeeee
Confidence 457899999999999998633 4444554 445554444
No 212
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=37.19 E-value=85 Score=28.92 Aligned_cols=12 Identities=8% Similarity=0.155 Sum_probs=10.4
Q ss_pred CCcCEEEEcCCC
Q psy15213 25 KYFDRILADLPC 36 (139)
Q Consensus 25 ~~fD~ILlDaPC 36 (139)
+.||.|+.+||.
T Consensus 302 ~~~d~IvtNPPY 313 (702)
T PRK11783 302 GPTGLVISNPPY 313 (702)
T ss_pred CCCCEEEECCCC
Confidence 469999999993
No 213
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=36.84 E-value=1.2e+02 Score=23.99 Aligned_cols=52 Identities=8% Similarity=0.026 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHhcccCCcEEEE---ecc----------CCCccccHHHHHHHHhhCCCcEEe
Q psy15213 59 KLSKYSCKILNNLWKMLKPGGKLLF---VTC----------SLWFEESEEQAIIFSKNHKDSIRL 110 (139)
Q Consensus 59 ~l~~~Q~~lL~~a~~~lk~gG~lvY---sTC----------S~~~~ENE~vV~~~l~~~~~~~~~ 110 (139)
.-....+.|-+.|++++++|..|+. ||| .+...-|--.+...|...|+++++
T Consensus 75 ~~~~~K~~IA~~Aa~lI~~gd~Ifld~GtT~~~l~~~L~~~~ltVvTNs~~ia~~l~~~~~~~vi 139 (240)
T PRK10411 75 SHYAHKADIAREALAWIEEGMVIALDASSTCWYLARQLPDINIQVFTNSHPICQELGKRERIQLI 139 (240)
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEcCcHHHHHHHHhhCCCCeEEEeCCHHHHHHHhcCCCCEEE
Confidence 3345567888999999999987776 555 223333444455555556666544
No 214
>KOG1678|consensus
Probab=36.84 E-value=15 Score=28.52 Aligned_cols=25 Identities=44% Similarity=0.854 Sum_probs=20.3
Q ss_pred CCcCEEEEcCCCCCccccccCCCCCccC
Q psy15213 25 KYFDRILADLPCTGSGVVRRNPDIPWLR 52 (139)
Q Consensus 25 ~~fD~ILlDaPCSg~G~~~r~p~~~~~~ 52 (139)
..|.+||+||- --.++++|++.|--
T Consensus 128 k~fEVIlvDp~---h~aIRrdp~~nwI~ 152 (204)
T KOG1678|consen 128 KYFEVILVDPF---HKAIRRDPRINWIC 152 (204)
T ss_pred eeEEEEEECcH---HHHHhcCCCccccc
Confidence 46899999997 45679999998854
No 215
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=36.49 E-value=33 Score=26.52 Aligned_cols=40 Identities=33% Similarity=0.369 Sum_probs=28.0
Q ss_pred CccCCHhHHHHHHHHHHHHHHHHHhcccCC--cEEEEeccCCCccccHH
Q psy15213 49 PWLRRKNDIKKLSKYSCKILNNLWKMLKPG--GKLLFVTCSLWFEESEE 95 (139)
Q Consensus 49 ~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~g--G~lvYsTCS~~~~ENE~ 95 (139)
.+.|++++. ..||+++...++|| |+|+-.---+.....+.
T Consensus 168 Lh~~~d~~~-------~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~ 209 (241)
T PF00891_consen 168 LHDWSDEDC-------VKILRNAAAALKPGKDGRLLIIEMVLPDDRTGP 209 (241)
T ss_dssp GGGS-HHHH-------HHHHHHHHHHSEECTTEEEEEEEEEECSSSSSH
T ss_pred hhhcchHHH-------HHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCc
Confidence 345666666 78999999999999 99988666544443333
No 216
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=36.48 E-value=1.1e+02 Score=23.95 Aligned_cols=75 Identities=15% Similarity=0.143 Sum_probs=48.3
Q ss_pred cccccccccCc---cccccCCCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEE
Q psy15213 7 ESSDINKKTNN---RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83 (139)
Q Consensus 7 ~~~~~~~~~~~---~~~~~~~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvY 83 (139)
+++.++.+... .+.|.+++++|+|+.- +|.+. +. ++.+..++++.+--.+|..+.-+.|++.-.||.
T Consensus 28 ~~~~lr~k~e~~f~~D~ll~gg~~DVIi~N-----s~LWD----l~-ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW 97 (183)
T cd01842 28 SSSQLKAKGELSFENDVLLEGGRLDLVIMN-----SCLWD----LS-RYQRNSMKTYRENLERLFSKLDSVLPIECLIVW 97 (183)
T ss_pred cHHHHhhhhhhhhccceeecCCceeEEEEe-----cceec----cc-ccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEE
Confidence 34455555443 3468888999999885 22321 11 112234666776767777777778889999999
Q ss_pred eccCCCcc
Q psy15213 84 VTCSLWFE 91 (139)
Q Consensus 84 sTCS~~~~ 91 (139)
.|-+--++
T Consensus 98 ~tt~Pv~~ 105 (183)
T cd01842 98 NTAMPVAE 105 (183)
T ss_pred ecCCCCCc
Confidence 99887553
No 217
>PRK06274 indolepyruvate oxidoreductase subunit B; Reviewed
Probab=36.17 E-value=1.1e+02 Score=23.05 Aligned_cols=20 Identities=25% Similarity=0.408 Sum_probs=14.4
Q ss_pred HHhcccCCcEEEEeccCCCc
Q psy15213 71 LWKMLKPGGKLLFVTCSLWF 90 (139)
Q Consensus 71 a~~~lk~gG~lvYsTCS~~~ 90 (139)
-+..|+|||++||.|=.+.+
T Consensus 82 ~~~~l~~gg~ii~ns~~~~~ 101 (197)
T PRK06274 82 NLHFLKKGGKIIVNAYAIHP 101 (197)
T ss_pred HHhhcCCCcEEEEECCCCCC
Confidence 35678999999998633443
No 218
>KOG2361|consensus
Probab=36.15 E-value=41 Score=27.66 Aligned_cols=20 Identities=50% Similarity=0.910 Sum_probs=16.1
Q ss_pred HHHHHHHHhcccCCcEEEEe
Q psy15213 65 CKILNNLWKMLKPGGKLLFV 84 (139)
Q Consensus 65 ~~lL~~a~~~lk~gG~lvYs 84 (139)
..-+.+..+++||||.|++.
T Consensus 163 ~~a~~nl~~llKPGG~llfr 182 (264)
T KOG2361|consen 163 QSVIKNLRTLLKPGGSLLFR 182 (264)
T ss_pred HHHHHHHHHHhCCCcEEEEe
Confidence 45577778899999999874
No 219
>KOG1975|consensus
Probab=35.90 E-value=37 Score=29.24 Aligned_cols=67 Identities=19% Similarity=0.263 Sum_probs=43.5
Q ss_pred CCcCEEEEcCCCCCcccccc----CCC--CC-------ccC-CHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCCc
Q psy15213 25 KYFDRILADLPCTGSGVVRR----NPD--IP-------WLR-RKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWF 90 (139)
Q Consensus 25 ~~fD~ILlDaPCSg~G~~~r----~p~--~~-------~~~-~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~ 90 (139)
..|-.+++=+-||......+ +|. +- +.+ +.+. -+.+|.++.+.|+|||..+=+
T Consensus 170 ~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~-------ar~~l~Nva~~LkpGG~FIgT------ 236 (389)
T KOG1975|consen 170 FIFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEES-------ARIALRNVAKCLKPGGVFIGT------ 236 (389)
T ss_pred ccceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHH-------HHHHHHHHHhhcCCCcEEEEe------
Confidence 34678999999998766543 341 10 111 2222 266899999999999998652
Q ss_pred cccHHHHHHHHhhC
Q psy15213 91 EESEEQAIIFSKNH 104 (139)
Q Consensus 91 ~ENE~vV~~~l~~~ 104 (139)
.=|-++|-+=|+..
T Consensus 237 iPdsd~Ii~rlr~~ 250 (389)
T KOG1975|consen 237 IPDSDVIIKRLRAG 250 (389)
T ss_pred cCcHHHHHHHHHhc
Confidence 23556676766654
No 220
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=35.79 E-value=79 Score=24.06 Aligned_cols=36 Identities=14% Similarity=0.030 Sum_probs=28.5
Q ss_pred CCcEEEEeccCCCccccHHHHHHHHhhCCCcEEecC
Q psy15213 77 PGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS 112 (139)
Q Consensus 77 ~gG~lvYsTCS~~~~ENE~vV~~~l~~~~~~~~~~~ 112 (139)
||-.++....-+.++|++++++.+-+..|++..+-.
T Consensus 73 P~l~i~g~~g~f~~~~~~~i~~~I~~s~~dil~Vgl 108 (177)
T TIGR00696 73 PKLKIVGAFGPLEPEERKAALAKIARSGAGIVFVGL 108 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHHHHcCCCEEEEEc
Confidence 666778776777788888889999998899877654
No 221
>PF02977 CarbpepA_inh: Carboxypeptidase A inhibitor; InterPro: IPR004231 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This family is represented by the well-characterised metallocarboxypeptidase A inhibitor (MCPI) from potatoes, which belongs to the MEROPS inhibitor family I37, clan IE. It inhibits metallopeptidases belonging to MEROPS peptidase family M14, carboxypeptidase A. In Russet Burbank potatoes, it is a mixture of approximately equal amounts of two polypeptide chains containing 38 or 39 amino acid residues. The chains differ in their amino terminal sequence only [] and are resistant to fragmentation by proteases []. The structure of the complex between bovine carboxypeptidase A and the 39-amino-acid carboxypeptidase A inhibitor from potatoes has been determined at 2.5-A resolution []. The potato inhibitor is synthesised as a precursor, having a 29 residue N-terminal signal peptide, a 27 residue pro-peptide, the 39 residue mature inhibitor region and a 7 residue C-terminal extension. The 7 residue C-terminal extension is involved in inhibitor inactivation and may be required for targeting to the vacuole where the mature active inhibitor accumulates []. The N-terminal region and the mature inhibitor are weakly related to other solananaceous proteins found in this entry, from potato, tomato and henbane, which have been incorrectly described as metallocarboxipeptidase inhibitors [].; GO: 0008191 metalloendopeptidase inhibitor activity; PDB: 4CPA_I 1H20_A 2HLG_A.
Probab=35.12 E-value=15 Score=22.37 Aligned_cols=18 Identities=28% Similarity=0.351 Sum_probs=11.7
Q ss_pred hcccCCcEEEEeccCCCc
Q psy15213 73 KMLKPGGKLLFVTCSLWF 90 (139)
Q Consensus 73 ~~lk~gG~lvYsTCS~~~ 90 (139)
++-++.|-.+|++|++.|
T Consensus 29 k~~~t~~g~~~~~~~~~p 46 (46)
T PF02977_consen 29 KLKKTCGGYVGSACSILP 46 (46)
T ss_dssp CCCEBCC--EEEEEES--
T ss_pred hcccCCCCcccceeeccC
Confidence 566788899999999864
No 222
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=34.48 E-value=1.5e+02 Score=22.94 Aligned_cols=62 Identities=15% Similarity=0.196 Sum_probs=41.9
Q ss_pred CCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCCccc-----cHHHHHH
Q psy15213 25 KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEE-----SEEQAII 99 (139)
Q Consensus 25 ~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~E-----NE~vV~~ 99 (139)
+.||+|++=|| +....-.+.+.+..+.+.+.|.+ +|- -+||+.-....+ ...+|.+
T Consensus 46 ~~ydavVIgAs------------I~~~h~~~~~~~Fv~k~~e~L~~-----kP~--A~f~vnl~a~k~k~~~e~~~yv~k 106 (175)
T COG4635 46 EDYDAVVIGAS------------IRYGHFHEAVQSFVKKHAEALST-----KPS--AFFSVNLTARKEKRTPETNSYVRK 106 (175)
T ss_pred hhCceEEEecc------------hhhhhhHHHHHHHHHHHHHHHhc-----CCc--eEEEeehhhcccccCchHHHHHHH
Confidence 57999999999 22223356788888888888876 664 455554443332 3348999
Q ss_pred HHhhCC
Q psy15213 100 FSKNHK 105 (139)
Q Consensus 100 ~l~~~~ 105 (139)
+|.+.|
T Consensus 107 fl~~~~ 112 (175)
T COG4635 107 FLMKSP 112 (175)
T ss_pred HHhcCC
Confidence 999874
No 223
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=33.33 E-value=55 Score=28.97 Aligned_cols=69 Identities=23% Similarity=0.278 Sum_probs=40.7
Q ss_pred cCCCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCCccccHHHHHHHH
Q psy15213 22 YKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFS 101 (139)
Q Consensus 22 ~~~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~l 101 (139)
.....+|.|.+-=| +|.-|.+-.+.++ .|.+.|......|||||.+-+.| -+++..++.+
T Consensus 413 ~~~~sv~~i~i~FP---------DPWpKkrh~krRl-----~~~~fl~~~~~~Lk~gG~i~~~T------D~~~y~~~~~ 472 (506)
T PRK01544 413 LPNNSLDGIYILFP---------DPWIKNKQKKKRI-----FNKERLKILQDKLKDNGNLVFAS------DIENYFYEAI 472 (506)
T ss_pred cCcccccEEEEECC---------CCCCCCCCccccc-----cCHHHHHHHHHhcCCCCEEEEEc------CCHHHHHHHH
Confidence 34456777777666 4433222122222 56777888888999999997765 3445555543
Q ss_pred ---hhCCCcEEe
Q psy15213 102 ---KNHKDSIRL 110 (139)
Q Consensus 102 ---~~~~~~~~~ 110 (139)
..++.++..
T Consensus 473 ~~~~~~~~f~~~ 484 (506)
T PRK01544 473 ELIQQNGNFEII 484 (506)
T ss_pred HHHHhCCCeEec
Confidence 445556543
No 224
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=33.01 E-value=1.1e+02 Score=25.69 Aligned_cols=51 Identities=25% Similarity=0.394 Sum_probs=36.7
Q ss_pred CCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCCccccHHHHHHHHhhC
Q psy15213 25 KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH 104 (139)
Q Consensus 25 ~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~l~~~ 104 (139)
..||.||+=.| | +. ...+.| |.+++..+.|||.|+- ..||+.-|..+.+..
T Consensus 36 ~~~d~~l~~~p-------------K---~~----~e~e~q---La~ll~~~~~g~~i~v------~g~~~~g~~s~~k~l 86 (300)
T COG2813 36 DDFDAVLLYWP-------------K---HK----AEAEFQ---LAQLLARLPPGGEIVV------VGEKRDGVRSAEKML 86 (300)
T ss_pred CCCCEEEEEcc-------------C---ch----HHHHHH---HHHHHhhCCCCCeEEE------EecccchHHHHHHHH
Confidence 47888888877 2 21 223344 7788889999999954 688988888886643
No 225
>KOG3349|consensus
Probab=32.79 E-value=50 Score=25.40 Aligned_cols=27 Identities=15% Similarity=0.192 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEeccCCCc
Q psy15213 60 LSKYSCKILNNLWKMLKPGGKLLFVTCSLWF 90 (139)
Q Consensus 60 l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~ 90 (139)
+-.-|.+|..+ + ..-|+|+|+|||-.+
T Consensus 112 MDNHQ~ELA~q---L-~~egyL~~C~ps~L~ 138 (170)
T KOG3349|consen 112 MDNHQLELAKQ---L-AEEGYLYYCTPSTLP 138 (170)
T ss_pred hhhHHHHHHHH---H-HhcCcEEEeeccchH
Confidence 45567776554 2 345799999999855
No 226
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=31.62 E-value=62 Score=25.27 Aligned_cols=26 Identities=23% Similarity=0.223 Sum_probs=18.4
Q ss_pred HHHHHHHHHhcccCCcEEEEeccCCC
Q psy15213 64 SCKILNNLWKMLKPGGKLLFVTCSLW 89 (139)
Q Consensus 64 Q~~lL~~a~~~lk~gG~lvYsTCS~~ 89 (139)
..+.+....++|+|||++++.|=.+.
T Consensus 134 R~~~~~~l~~lL~pgG~~~l~~~~~~ 159 (218)
T PRK13255 134 RERYVQQLAALLPAGCRGLLVTLDYP 159 (218)
T ss_pred HHHHHHHHHHHcCCCCeEEEEEEEeC
Confidence 46677888889999997555444444
No 227
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=30.97 E-value=63 Score=26.96 Aligned_cols=15 Identities=20% Similarity=0.306 Sum_probs=13.0
Q ss_pred CCcCEEEEcCCCCCc
Q psy15213 25 KYFDRILADLPCTGS 39 (139)
Q Consensus 25 ~~fD~ILlDaPCSg~ 39 (139)
...+.|+||-|-||.
T Consensus 147 HePeLlILDEPFSGL 161 (300)
T COG4152 147 HEPELLILDEPFSGL 161 (300)
T ss_pred cCCCEEEecCCccCC
Confidence 357999999999887
No 228
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=30.81 E-value=24 Score=24.98 Aligned_cols=15 Identities=40% Similarity=0.658 Sum_probs=12.0
Q ss_pred CCcCEEEEcCCCCCc
Q psy15213 25 KYFDRILADLPCTGS 39 (139)
Q Consensus 25 ~~fD~ILlDaPCSg~ 39 (139)
..||.|++|.|+.-.
T Consensus 116 ~~yd~IivD~~~~~~ 130 (157)
T PF13614_consen 116 EHYDYIIVDLPSSLS 130 (157)
T ss_dssp HHSSEEEEEEESTTT
T ss_pred HcCCEEEEECcCCcc
Confidence 489999999995433
No 229
>KOG2915|consensus
Probab=30.81 E-value=45 Score=28.01 Aligned_cols=12 Identities=33% Similarity=0.520 Sum_probs=10.5
Q ss_pred CCCcCEEEEcCC
Q psy15213 24 NKYFDRILADLP 35 (139)
Q Consensus 24 ~~~fD~ILlDaP 35 (139)
...+|.|.||-|
T Consensus 175 s~~aDaVFLDlP 186 (314)
T KOG2915|consen 175 SLKADAVFLDLP 186 (314)
T ss_pred ccccceEEEcCC
Confidence 468999999999
No 230
>KOG3421|consensus
Probab=30.42 E-value=16 Score=27.13 Aligned_cols=12 Identities=58% Similarity=1.046 Sum_probs=10.5
Q ss_pred CEEEEcCCCCCc
Q psy15213 28 DRILADLPCTGS 39 (139)
Q Consensus 28 D~ILlDaPCSg~ 39 (139)
.+||+|.|||+.
T Consensus 34 nr~lvDGp~t~v 45 (136)
T KOG3421|consen 34 NRALVDGPCTGV 45 (136)
T ss_pred hhhhccCccccc
Confidence 589999999975
No 231
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=29.75 E-value=71 Score=26.77 Aligned_cols=16 Identities=38% Similarity=0.569 Sum_probs=12.8
Q ss_pred CCCcCEEEEcCCCCCc
Q psy15213 24 NKYFDRILADLPCTGS 39 (139)
Q Consensus 24 ~~~fD~ILlDaPCSg~ 39 (139)
.+.||.|++-||--.+
T Consensus 187 ~~~fDlivcNPPf~~s 202 (321)
T PRK11727 187 NERFDATLCNPPFHAS 202 (321)
T ss_pred CCceEEEEeCCCCcCc
Confidence 4689999999995543
No 232
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=29.67 E-value=71 Score=27.18 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=19.5
Q ss_pred HHHHHHHHhcccCCcEEEEeccCC
Q psy15213 65 CKILNNLWKMLKPGGKLLFVTCSL 88 (139)
Q Consensus 65 ~~lL~~a~~~lk~gG~lvYsTCS~ 88 (139)
..++..+.++|||||+++..+-+.
T Consensus 247 ~~~l~~i~r~LkpGG~lvl~~i~~ 270 (383)
T PRK11705 247 RTYFEVVRRCLKPDGLFLLHTIGS 270 (383)
T ss_pred HHHHHHHHHHcCCCcEEEEEEccC
Confidence 467888999999999999876443
No 233
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=29.46 E-value=1.5e+02 Score=25.24 Aligned_cols=54 Identities=20% Similarity=0.229 Sum_probs=36.0
Q ss_pred CCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCCccc---cHHHHHHHH
Q psy15213 25 KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEE---SEEQAIIFS 101 (139)
Q Consensus 25 ~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~E---NE~vV~~~l 101 (139)
..||+|++--| . .+.+.+..|++.+++||.|.|-+-.-.... .+..+..+.
T Consensus 255 ~~aDrIim~~p-------------~-------------~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~~ 308 (341)
T COG2520 255 GVADRIIMGLP-------------K-------------SAHEFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSAA 308 (341)
T ss_pred ccCCEEEeCCC-------------C-------------cchhhHHHHHHHhhcCcEEEEEeccchhhcccchHHHHHHHH
Confidence 67899998888 1 235678899999999999988554333222 335555555
Q ss_pred hhC
Q psy15213 102 KNH 104 (139)
Q Consensus 102 ~~~ 104 (139)
.+.
T Consensus 309 ~~~ 311 (341)
T COG2520 309 RKG 311 (341)
T ss_pred hhc
Confidence 444
No 234
>PF06306 CgtA: Beta-1,4-N-acetylgalactosaminyltransferase (CgtA); InterPro: IPR010446 This family consists of several beta-1,4-N-acetylgalactosaminyltransferase proteins from Campylobacter jejuni [].
Probab=29.39 E-value=90 Score=26.69 Aligned_cols=47 Identities=15% Similarity=0.213 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhcccCCcEEEEeccCCCccccHHHHHHHHhhCCCcEEec
Q psy15213 61 SKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLN 111 (139)
Q Consensus 61 ~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~l~~~~~~~~~~ 111 (139)
+..-++=|.+.+.++. .|.+.|-+||=.. |+++..+.+++|++..+.
T Consensus 99 ~~tl~~si~S~Lpai~-~gVI~yNdc~D~t---~Eiil~fckkyP~fip~~ 145 (347)
T PF06306_consen 99 AMTLAESIESILPAID-EGVIGYNDCTDGT---EEIILEFCKKYPSFIPIK 145 (347)
T ss_pred hhhHHHHHHHHHHHHh-ccEEEeecCCCCH---HHHHHHHHHhCccccccc
Confidence 3344556777777775 5699999997554 789999999999976553
No 235
>cd01066 APP_MetAP A family including aminopeptidase P, aminopeptidase M, and prolidase. Also known as metallopeptidase family M24. This family of enzymes is able to cleave amido-, imido- and amidino-containing bonds. Members exibit relatively narrow substrate specificity compared to other metallo-aminopeptidases, suggesting they play roles in regulation of biological processes rather than general protein degradation.
Probab=29.20 E-value=1.6e+02 Score=21.15 Aligned_cols=67 Identities=21% Similarity=0.225 Sum_probs=47.2
Q ss_pred CcCEEEEcCCCCCccccccCCCCC--cc--CCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCCccccHHHHHHHH
Q psy15213 26 YFDRILADLPCTGSGVVRRNPDIP--WL--RRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFS 101 (139)
Q Consensus 26 ~fD~ILlDaPCSg~G~~~r~p~~~--~~--~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~l 101 (139)
.=|.|++|.-+...|.. .++. +. ......+++.+.-.+.+..++++++||- ...|-.+.+.+++
T Consensus 72 ~gd~v~~d~g~~~~gy~---~d~~rt~~~g~~~~~~~~~~~~~~~~~~~~~~~i~pG~---------~~~ei~~~~~~~~ 139 (207)
T cd01066 72 EGDLVLVDLGGVYDGYH---ADLTRTFVIGEPSDEQRELYEAVREAQEAALAALRPGV---------TAEEVDAAAREVL 139 (207)
T ss_pred CCCEEEEEeceeECCCc---cceeceeEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCC---------cHHHHHHHHHHHH
Confidence 34899999887665542 2221 11 1235778888888999999999999983 5566667777777
Q ss_pred hhC
Q psy15213 102 KNH 104 (139)
Q Consensus 102 ~~~ 104 (139)
++.
T Consensus 140 ~~~ 142 (207)
T cd01066 140 EEH 142 (207)
T ss_pred HHc
Confidence 765
No 236
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=29.14 E-value=73 Score=26.97 Aligned_cols=56 Identities=13% Similarity=0.084 Sum_probs=35.5
Q ss_pred CCHhHHHHH---HHHHHHHHHHHHhcccCCcEEEEeccCCC-ccccHHHHHHHHhhCCCc
Q psy15213 52 RRKNDIKKL---SKYSCKILNNLWKMLKPGGKLLFVTCSLW-FEESEEQAIIFSKNHKDS 107 (139)
Q Consensus 52 ~~~~~~~~l---~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~-~~ENE~vV~~~l~~~~~~ 107 (139)
.+++++-.. .+.-++.+.++.+..+|.-+.||+||.-. .-++-+-|.+-+++..++
T Consensus 60 l~E~dvv~g~gg~~~L~~aI~ei~~~~~P~~I~V~sTCv~e~IGDDi~~v~~~~~~~~~~ 119 (396)
T cd01979 60 LEEGDLSALLNDYAELDRVVTQIKRDRNPSVIFLIGSCTTEVIKMDLEGAAPRLSAEIGV 119 (396)
T ss_pred cCchhhhhccCchHHHHHHHHHHHHhcCCCEEEEECCCHHHHHhcCHHHHHHHHhhcCCC
Confidence 455554322 24556778888888899999999999876 444444444444433343
No 237
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=29.10 E-value=42 Score=26.98 Aligned_cols=28 Identities=32% Similarity=0.613 Sum_probs=20.6
Q ss_pred HHHHHHHHhcccCCcEEEEeccCCCccccH
Q psy15213 65 CKILNNLWKMLKPGGKLLFVTCSLWFEESE 94 (139)
Q Consensus 65 ~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE 94 (139)
.+.|+.+.+.|||||+++ .+.+++-++.
T Consensus 136 ~~aL~E~~RVlKpgG~~~--vle~~~p~~~ 163 (238)
T COG2226 136 DKALKEMYRVLKPGGRLL--VLEFSKPDNP 163 (238)
T ss_pred HHHHHHHHHhhcCCeEEE--EEEcCCCCch
Confidence 466888999999999664 4666666553
No 238
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=28.86 E-value=92 Score=26.02 Aligned_cols=15 Identities=27% Similarity=0.598 Sum_probs=11.4
Q ss_pred HHhcccCCcEEEEec
Q psy15213 71 LWKMLKPGGKLLFVT 85 (139)
Q Consensus 71 a~~~lk~gG~lvYsT 85 (139)
.++.|+|||+++...
T Consensus 166 ~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 166 WFTQLKEGGRVIVPI 180 (322)
T ss_pred HHHhcCCCCEEEEEe
Confidence 456789999988744
No 239
>KOG3178|consensus
Probab=28.67 E-value=69 Score=27.34 Aligned_cols=29 Identities=41% Similarity=0.534 Sum_probs=25.0
Q ss_pred cCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEecc
Q psy15213 51 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 86 (139)
Q Consensus 51 ~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTC 86 (139)
.|+.++. .++|+++.+.|+|||.|+-.-+
T Consensus 248 dwtDedc-------vkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 248 DWTDEDC-------VKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred cCChHHH-------HHHHHHHHHhCCCCCEEEEEec
Confidence 4677777 7899999999999999998766
No 240
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=28.65 E-value=1.5e+02 Score=18.33 Aligned_cols=34 Identities=21% Similarity=0.218 Sum_probs=21.5
Q ss_pred HHHHHHhcccCCcEE-EEeccCCCccccHHHHHHHHhhC
Q psy15213 67 ILNNLWKMLKPGGKL-LFVTCSLWFEESEEQAIIFSKNH 104 (139)
Q Consensus 67 lL~~a~~~lk~gG~l-vYsTCS~~~~ENE~vV~~~l~~~ 104 (139)
.+..|++-+++|..| |.+++.-.. +.|..++++.
T Consensus 16 ~~~~~l~~l~~G~~l~v~~d~~~~~----~di~~~~~~~ 50 (70)
T PF01206_consen 16 KAKKALKELPPGEVLEVLVDDPAAV----EDIPRWCEEN 50 (70)
T ss_dssp HHHHHHHTSGTT-EEEEEESSTTHH----HHHHHHHHHH
T ss_pred HHHHHHHhcCCCCEEEEEECCccHH----HHHHHHHHHC
Confidence 456778888888766 776666655 4455555544
No 241
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=28.57 E-value=1.6e+02 Score=23.37 Aligned_cols=57 Identities=11% Similarity=0.080 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhcccCCcEEEE---eccC----------CCccccHHHHHHHHhhCCCcEEecCCCcccC
Q psy15213 62 KYSCKILNNLWKMLKPGGKLLF---VTCS----------LWFEESEEQAIIFSKNHKDSIRLNSPGQLLP 118 (139)
Q Consensus 62 ~~Q~~lL~~a~~~lk~gG~lvY---sTCS----------~~~~ENE~vV~~~l~~~~~~~~~~~~~~~~P 118 (139)
..-+.|-+.|+.++++|..|+. |||. +...-|--.|...|..++++.+.-+.|.+.|
T Consensus 78 ~~K~~IA~~Aa~~I~~g~~Ifld~GsT~~~la~~L~~~~ltVvTnsl~ia~~l~~~~~~~v~l~GG~~~~ 147 (251)
T PRK13509 78 DEKVRIAKAASQLCNPGESVVINCGSTAFLLGRELCGKPVQIITNYLPLANYLIDQEHDSVIIMGGQYNK 147 (251)
T ss_pred HHHHHHHHHHHHhCCCCCEEEECCcHHHHHHHHHhCCCCeEEEeCCHHHHHHHHhCCCCEEEEECCeEcC
Confidence 3446788899999999877766 4441 2233333445555555555554433344433
No 242
>PF11769 DUF3313: Protein of unknown function (DUF3313); InterPro: IPR021747 This a bacterial family of proteins which are annotated as putative lipoproteins.
Probab=28.57 E-value=1.3e+02 Score=22.82 Aligned_cols=44 Identities=18% Similarity=0.395 Sum_probs=32.1
Q ss_pred CCcCEEEEcCCCCCccccccCCCCCcc-CCHhHHHHHHHHHHHHHHHHHh
Q psy15213 25 KYFDRILADLPCTGSGVVRRNPDIPWL-RRKNDIKKLSKYSCKILNNLWK 73 (139)
Q Consensus 25 ~~fD~ILlDaPCSg~G~~~r~p~~~~~-~~~~~~~~l~~~Q~~lL~~a~~ 73 (139)
..|++|+++|- .+...++..|. .++.+...+...-.+-|..++.
T Consensus 46 ~~Y~~v~i~Pv-----~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~~l~ 90 (201)
T PF11769_consen 46 AQYTKVIIEPV-----EVYPGPDATWQGLSDADLQQLANYFDRALCEALS 90 (201)
T ss_pred hhCcEEEEeeE-----EEEecCCcccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 57999999997 44344665666 7888888888777777777664
No 243
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=28.55 E-value=68 Score=28.64 Aligned_cols=48 Identities=10% Similarity=0.043 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcc-cCCcEEEEeccCCCcc-cc-HHHHHHHHhhCCCcEEec
Q psy15213 64 SCKILNNLWKML-KPGGKLLFVTCSLWFE-ES-EEQAIIFSKNHKDSIRLN 111 (139)
Q Consensus 64 Q~~lL~~a~~~l-k~gG~lvYsTCS~~~~-EN-E~vV~~~l~~~~~~~~~~ 111 (139)
-++-+.++++.. +|..+.||+||+.-.. ++ +.|++.+-++.++..+++
T Consensus 115 L~~~I~ea~~~~~~p~~I~V~tTC~t~lIGDDi~av~k~~~~~~~~~pVi~ 165 (513)
T TIGR01861 115 LKQNIIEAFKAFPHIKRMTIYQTCATALIGDDIAAIAKEVMEEMPDVDIFV 165 (513)
T ss_pred HHHHHHHHHHhCCCCCeEEEEccCchhhccCCHHHHHHHHHHhcCCCcEEE
Confidence 355566677666 5778999999998743 22 345555555555543333
No 244
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=28.51 E-value=52 Score=26.64 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=13.3
Q ss_pred CCcCEEEEcCCCCCccc
Q psy15213 25 KYFDRILADLPCTGSGV 41 (139)
Q Consensus 25 ~~fD~ILlDaPCSg~G~ 41 (139)
..||+|++|.|=||...
T Consensus 111 ~~yD~iVvDtaPtghtL 127 (284)
T TIGR00345 111 NEFDVVIFDTAPTGHTL 127 (284)
T ss_pred ccCCEEEECCCChHHHH
Confidence 57999999999666543
No 245
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=28.50 E-value=1.5e+02 Score=23.87 Aligned_cols=40 Identities=25% Similarity=0.172 Sum_probs=23.4
Q ss_pred HHHHHH-HHHHhcccCCcEEEE--eccCCCcccc-HHHHHHHHh
Q psy15213 63 YSCKIL-NNLWKMLKPGGKLLF--VTCSLWFEES-EEQAIIFSK 102 (139)
Q Consensus 63 ~Q~~lL-~~a~~~lk~gG~lvY--sTCS~~~~EN-E~vV~~~l~ 102 (139)
-|.+|+ .+|-.+||+||.++- =.-|+...+. +++-+.-++
T Consensus 157 ~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~ 200 (231)
T COG1889 157 NQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVE 200 (231)
T ss_pred hHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHH
Confidence 355554 577889999995544 4556664444 444443433
No 246
>PRK04243 50S ribosomal protein L15e; Validated
Probab=28.31 E-value=36 Score=26.82 Aligned_cols=25 Identities=28% Similarity=0.783 Sum_probs=19.4
Q ss_pred CCcCEEEEcCCCCCccccccCCCCCccC
Q psy15213 25 KYFDRILADLPCTGSGVVRRNPDIPWLR 52 (139)
Q Consensus 25 ~~fD~ILlDaPCSg~G~~~r~p~~~~~~ 52 (139)
..|.+|||||-+. .++.+|++.|.-
T Consensus 128 K~fEVIlVDp~H~---aIr~Dp~~nWI~ 152 (196)
T PRK04243 128 KWYEVILVDPHHP---AIKNDPDLNWIC 152 (196)
T ss_pred ccEEEEEecCCCc---chhcCcccceec
Confidence 3578999999865 457889988854
No 247
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=27.86 E-value=34 Score=26.99 Aligned_cols=12 Identities=25% Similarity=0.520 Sum_probs=10.5
Q ss_pred CCCcCEEEEcCC
Q psy15213 24 NKYFDRILADLP 35 (139)
Q Consensus 24 ~~~fD~ILlDaP 35 (139)
.+.||.||+|.|
T Consensus 210 ~~~yD~ViiD~p 221 (274)
T TIGR03029 210 MGDYDVVIVDTP 221 (274)
T ss_pred HhcCCEEEEeCC
Confidence 357999999998
No 248
>PF00827 Ribosomal_L15e: Ribosomal L15; InterPro: IPR000439 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities []. One of these families consists of: Mammalian L15. Insect L15. Plant L15. Yeast YL10 (L13) (Rp15r). Archaebacterial L15e. These proteins have about 200 amino acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZR_P 4A1E_L 4A17_L 4A1A_L 4A1C_L 2ZKR_m 3IZS_P 1S1I_L 3O58_O 3O5H_O ....
Probab=27.80 E-value=36 Score=26.77 Aligned_cols=25 Identities=36% Similarity=0.814 Sum_probs=18.4
Q ss_pred CcCEEEEcCCCCCccccccCCCCCccCC
Q psy15213 26 YFDRILADLPCTGSGVVRRNPDIPWLRR 53 (139)
Q Consensus 26 ~fD~ILlDaPCSg~G~~~r~p~~~~~~~ 53 (139)
.|.+|||||-+. .++++|++.|--+
T Consensus 128 ~fEVIlVDp~h~---~Ir~D~~~nWI~~ 152 (192)
T PF00827_consen 128 WFEVILVDPNHP---AIRNDPDINWICN 152 (192)
T ss_dssp EEEEEEE-TTSH---HHHTTTTTGGGGS
T ss_pred eEEEEEecCCcH---HHhcCCccceecc
Confidence 478999999854 5788999988543
No 249
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=27.57 E-value=80 Score=25.99 Aligned_cols=16 Identities=38% Similarity=0.571 Sum_probs=12.8
Q ss_pred CCCcCEEEEcCCCCCc
Q psy15213 24 NKYFDRILADLPCTGS 39 (139)
Q Consensus 24 ~~~fD~ILlDaPCSg~ 39 (139)
...||+|++|.|=||.
T Consensus 124 ~~~~D~IVvDt~ptg~ 139 (305)
T PF02374_consen 124 SGEYDLIVVDTPPTGH 139 (305)
T ss_dssp HCSTSEEEEESSSSHH
T ss_pred hCCCCEEEECCCCcHH
Confidence 4789999999995544
No 250
>PTZ00026 60S ribosomal protein L15; Provisional
Probab=27.47 E-value=38 Score=26.86 Aligned_cols=25 Identities=32% Similarity=0.741 Sum_probs=19.3
Q ss_pred CCcCEEEEcCCCCCccccccCCCCCccC
Q psy15213 25 KYFDRILADLPCTGSGVVRRNPDIPWLR 52 (139)
Q Consensus 25 ~~fD~ILlDaPCSg~G~~~r~p~~~~~~ 52 (139)
..|.+|||||-.. .++.+|++.|.-
T Consensus 128 K~yEVILvDp~H~---aIr~Dp~~nWI~ 152 (204)
T PTZ00026 128 KFYEVILVDPFHN---AIRNDPRINWIC 152 (204)
T ss_pred ccEEEEEecCCCc---cceeCcccceec
Confidence 3578999999854 568889988854
No 251
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=27.42 E-value=46 Score=21.95 Aligned_cols=13 Identities=31% Similarity=0.444 Sum_probs=10.6
Q ss_pred CcCEEEEcCCCCC
Q psy15213 26 YFDRILADLPCTG 38 (139)
Q Consensus 26 ~fD~ILlDaPCSg 38 (139)
.||.|++|.|.+.
T Consensus 39 ~~d~viiD~p~~~ 51 (104)
T cd02042 39 QYDYIIIDTPPSL 51 (104)
T ss_pred CCCEEEEeCcCCC
Confidence 3999999999543
No 252
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=27.22 E-value=1.9e+02 Score=21.72 Aligned_cols=14 Identities=21% Similarity=0.093 Sum_probs=11.8
Q ss_pred CcCEEEEcCCCCCc
Q psy15213 26 YFDRILADLPCTGS 39 (139)
Q Consensus 26 ~fD~ILlDaPCSg~ 39 (139)
..+.+|+|-|++|.
T Consensus 108 ~~~llllDEp~~gl 121 (202)
T cd03243 108 PRSLVLIDELGRGT 121 (202)
T ss_pred CCeEEEEecCCCCC
Confidence 56899999998877
No 253
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=27.15 E-value=66 Score=27.19 Aligned_cols=15 Identities=27% Similarity=0.552 Sum_probs=14.2
Q ss_pred CCcEEEEeccCCCcc
Q psy15213 77 PGGKLLFVTCSLWFE 91 (139)
Q Consensus 77 ~gG~lvYsTCS~~~~ 91 (139)
+|+.+|-.+|++.|+
T Consensus 25 ~G~kvvg~~c~y~P~ 39 (377)
T TIGR03190 25 TGGQVVATMCTYTPE 39 (377)
T ss_pred CCCEEEEEeCCcChH
Confidence 699999999999996
No 254
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=27.05 E-value=47 Score=26.95 Aligned_cols=25 Identities=28% Similarity=0.561 Sum_probs=19.1
Q ss_pred HHHHHHHHhcccCCcEEEEeccCCC
Q psy15213 65 CKILNNLWKMLKPGGKLLFVTCSLW 89 (139)
Q Consensus 65 ~~lL~~a~~~lk~gG~lvYsTCS~~ 89 (139)
..++.++.++|||||+++.-+.+..
T Consensus 146 ~~~f~~~~~~LkpgG~~~lq~i~~~ 170 (273)
T PF02353_consen 146 PAFFRKISRLLKPGGRLVLQTITHR 170 (273)
T ss_dssp HHHHHHHHHHSETTEEEEEEEEEE-
T ss_pred HHHHHHHHHhcCCCcEEEEEecccc
Confidence 5668888899999999986555544
No 255
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=26.77 E-value=76 Score=25.80 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=21.6
Q ss_pred HHHHHHHHHhcccCCcEEEEeccCCCc
Q psy15213 64 SCKILNNLWKMLKPGGKLLFVTCSLWF 90 (139)
Q Consensus 64 Q~~lL~~a~~~lk~gG~lvYsTCS~~~ 90 (139)
+..+|++..+.|+|||.++...=+...
T Consensus 156 ~~~~L~~i~~~L~pgG~~lig~d~~~~ 182 (301)
T TIGR03438 156 AVAFLRRIRQLLGPGGGLLIGVDLVKD 182 (301)
T ss_pred HHHHHHHHHHhcCCCCEEEEeccCCCC
Confidence 468899999999999999986655543
No 256
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=26.67 E-value=1.7e+02 Score=28.00 Aligned_cols=48 Identities=10% Similarity=0.030 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHhcccCCcEEEEeccCCCccccHHHHHHHHhhC
Q psy15213 57 IKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH 104 (139)
Q Consensus 57 ~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~l~~~ 104 (139)
.+.+-.+-.+.+++.-.+++++|+||.-=---.++-=...|+.-+.+.
T Consensus 560 ~~~fe~l~~~a~~~~rEll~ddg~lv~y~ahk~~eaW~tlveA~~Rra 607 (875)
T COG1743 560 VEEFENLFREAFQAVRELLKDDGRLVTYYAHKAPEAWITLVEAGWRRA 607 (875)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCeEEEEEeccCccchHHHHHHHhhhc
Confidence 566777777888888889999999875433344555555666645543
No 257
>KOG2414|consensus
Probab=26.58 E-value=1.1e+02 Score=27.21 Aligned_cols=46 Identities=17% Similarity=0.229 Sum_probs=28.4
Q ss_pred CEEEEcCCCCCccccc---cC-CC-CCccCCHhH-HHHHHHHHHHHHHHHHh
Q psy15213 28 DRILADLPCTGSGVVR---RN-PD-IPWLRRKND-IKKLSKYSCKILNNLWK 73 (139)
Q Consensus 28 D~ILlDaPCSg~G~~~---r~-p~-~~~~~~~~~-~~~l~~~Q~~lL~~a~~ 73 (139)
|.|||||=|.-.|.+. |- |- -+|.--..+ -+-+...|++.+..+..
T Consensus 308 emVLvDaGcelgGYvSDITRTWP~sGkFs~~Qr~LYeavL~vq~ecik~c~~ 359 (488)
T KOG2414|consen 308 EMVLVDAGCELGGYVSDITRTWPISGKFSDAQRDLYEAVLQVQEECIKYCKP 359 (488)
T ss_pred cEEEEecCcccCceEccceeccCCCCccCcHHHHHHHHHHHHHHHHHHhhcC
Confidence 7999999999888763 11 11 122222233 35567788888777653
No 258
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=26.25 E-value=2.4e+02 Score=21.52 Aligned_cols=12 Identities=33% Similarity=0.490 Sum_probs=9.5
Q ss_pred CCCcCEEEEcCC
Q psy15213 24 NKYFDRILADLP 35 (139)
Q Consensus 24 ~~~fD~ILlDaP 35 (139)
.+.+|.||+|.|
T Consensus 81 ~~~~D~vlIDT~ 92 (196)
T PF00448_consen 81 KKGYDLVLIDTA 92 (196)
T ss_dssp HTTSSEEEEEE-
T ss_pred hcCCCEEEEecC
Confidence 357999999999
No 259
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=26.00 E-value=2.6e+02 Score=22.20 Aligned_cols=25 Identities=12% Similarity=0.202 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHhcccCCcEEEE
Q psy15213 59 KLSKYSCKILNNLWKMLKPGGKLLF 83 (139)
Q Consensus 59 ~l~~~Q~~lL~~a~~~lk~gG~lvY 83 (139)
.-.+..+.|-..|+.++++|..|+.
T Consensus 73 ~~~~~K~~IA~~Aa~~I~~g~tIfl 97 (252)
T PRK10906 73 TQTEEKERIARKVASQIPNGATLFI 97 (252)
T ss_pred hcHHHHHHHHHHHHhhCCCCCEEEE
Confidence 3345557899999999999877776
No 260
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=25.96 E-value=44 Score=24.33 Aligned_cols=14 Identities=21% Similarity=0.351 Sum_probs=11.8
Q ss_pred CCcCEEEEcCCCCC
Q psy15213 25 KYFDRILADLPCTG 38 (139)
Q Consensus 25 ~~fD~ILlDaPCSg 38 (139)
..||.|++|.|-+-
T Consensus 66 ~~yD~VIiD~pp~~ 79 (169)
T cd02037 66 GELDYLVIDMPPGT 79 (169)
T ss_pred CCCCEEEEeCCCCC
Confidence 57999999999653
No 261
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=25.89 E-value=2.5e+02 Score=20.84 Aligned_cols=14 Identities=21% Similarity=0.095 Sum_probs=12.0
Q ss_pred CcCEEEEcCCCCCc
Q psy15213 26 YFDRILADLPCTGS 39 (139)
Q Consensus 26 ~fD~ILlDaPCSg~ 39 (139)
..+.||+|=|++|+
T Consensus 78 ~~~llllDEp~~g~ 91 (185)
T smart00534 78 ENSLVLLDELGRGT 91 (185)
T ss_pred CCeEEEEecCCCCC
Confidence 56899999998887
No 262
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=25.87 E-value=3e+02 Score=23.16 Aligned_cols=62 Identities=18% Similarity=0.157 Sum_probs=36.0
Q ss_pred CCCcCEEEEcCC-CCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCCccccHHH--HHHH
Q psy15213 24 NKYFDRILADLP-CTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQ--AIIF 100 (139)
Q Consensus 24 ~~~fD~ILlDaP-CSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~v--V~~~ 100 (139)
...||.++|||. |...++ .++.+.++. ++.||+++-+=-|+-..||=.- =..-
T Consensus 41 ~~~f~llVVDps~~g~~~~---------~~~~eelr~---------------~~~gg~~pIAYlsIg~ae~yR~Ywd~~w 96 (300)
T COG2342 41 NSPFDLLVVDPSYCGPFNT---------PWTIEELRT---------------KADGGVKPIAYLSIGEAESYRFYWDKYW 96 (300)
T ss_pred cCCCcEEEEeccccCCCCC---------cCcHHHHHH---------------HhcCCeeEEEEEechhhhhhhhHhhhhh
Confidence 368999999994 433333 344455432 3568876666666766666544 2233
Q ss_pred HhhCCCcEE
Q psy15213 101 SKNHKDSIR 109 (139)
Q Consensus 101 l~~~~~~~~ 109 (139)
+.+.|++..
T Consensus 97 ~~~~p~wLg 105 (300)
T COG2342 97 LTGRPDWLG 105 (300)
T ss_pred hcCCccccc
Confidence 445566543
No 263
>COG2103 Predicted sugar phosphate isomerase [General function prediction only]
Probab=25.83 E-value=1e+02 Score=25.79 Aligned_cols=20 Identities=25% Similarity=0.582 Sum_probs=15.2
Q ss_pred HHHHHHHhcccCCcEEEEec
Q psy15213 66 KILNNLWKMLKPGGKLLFVT 85 (139)
Q Consensus 66 ~lL~~a~~~lk~gG~lvYsT 85 (139)
..++.+...++.||+|+|.-
T Consensus 48 ~Av~~~~~~l~~GGRLiY~G 67 (298)
T COG2103 48 AAVDIIAAALKQGGRLIYIG 67 (298)
T ss_pred HHHHHHHHHHHcCCeEEEEc
Confidence 44556667889999999953
No 264
>PRK10742 putative methyltransferase; Provisional
Probab=25.22 E-value=2.1e+02 Score=23.30 Aligned_cols=25 Identities=4% Similarity=-0.076 Sum_probs=16.2
Q ss_pred cccccCccccccC--CCCcCEEEEcCC
Q psy15213 11 INKKTNNRFRFYK--NKYFDRILADLP 35 (139)
Q Consensus 11 ~~~~~~~~~~~~~--~~~fD~ILlDaP 35 (139)
+.-...|...|.. ...||.|.+|||
T Consensus 147 i~l~~~da~~~L~~~~~~fDVVYlDPM 173 (250)
T PRK10742 147 LQLIHASSLTALTDITPRPQVVYLDPM 173 (250)
T ss_pred EEEEeCcHHHHHhhCCCCCcEEEECCC
Confidence 3333445555533 247999999999
No 265
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=25.16 E-value=62 Score=24.54 Aligned_cols=62 Identities=18% Similarity=0.244 Sum_probs=27.1
Q ss_pred cCEEEEcCCCCCccccccCC-CCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCCccccHHHHHHHH
Q psy15213 27 FDRILADLPCTGSGVVRRNP-DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFS 101 (139)
Q Consensus 27 fD~ILlDaPCSg~G~~~r~p-~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~l 101 (139)
||.|.+|||..|-.-.+... ++.....+-.+ .+|+..+.++-+ . .++| +-..-|-.++..++
T Consensus 70 ~D~vFlSPPWGGp~Y~~~~~fdL~~~~~p~~~-------~~l~~~~~~~t~-n-v~l~----LPRn~dl~ql~~~~ 132 (163)
T PF09445_consen 70 FDVVFLSPPWGGPSYSKKDVFDLEKSMQPFNL-------EDLLKAARKITP-N-VVLF----LPRNSDLNQLSQLT 132 (163)
T ss_dssp -SEEEE---BSSGGGGGSSSB-TTTSSSS--H-------HHHHHHHHHH-S---EEEE----EETTB-HHHHHHT-
T ss_pred ccEEEECCCCCCccccccCccCHHHccCCCCH-------HHHHHHHHhhCC-C-EEEE----eCCCCCHHHHHHHh
Confidence 89999999999877665321 11112233233 344555555542 2 5555 33334445555554
No 266
>KOG1661|consensus
Probab=25.01 E-value=86 Score=25.42 Aligned_cols=16 Identities=50% Similarity=0.870 Sum_probs=11.0
Q ss_pred HHHHHhcccCCcEEEE
Q psy15213 68 LNNLWKMLKPGGKLLF 83 (139)
Q Consensus 68 L~~a~~~lk~gG~lvY 83 (139)
.+.-+..|++||+|+-
T Consensus 176 pq~l~dqL~~gGrlli 191 (237)
T KOG1661|consen 176 PQELLDQLKPGGRLLI 191 (237)
T ss_pred HHHHHHhhccCCeEEE
Confidence 3344556789999976
No 267
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=24.94 E-value=77 Score=26.77 Aligned_cols=19 Identities=26% Similarity=0.585 Sum_probs=16.8
Q ss_pred HHHHHHHhcccCCcEEEEe
Q psy15213 66 KILNNLWKMLKPGGKLLFV 84 (139)
Q Consensus 66 ~lL~~a~~~lk~gG~lvYs 84 (139)
.+|+++.+.|||||+++..
T Consensus 196 ~~L~e~~rvLkPGG~LvIi 214 (340)
T PLN02490 196 RGIKEAYRVLKIGGKACLI 214 (340)
T ss_pred HHHHHHHHhcCCCcEEEEE
Confidence 5789999999999998774
No 268
>TIGR01627 A_thal_3515 uncharacterized plant-specific domain TIGR01627. This model represents an uncharacterized domain found in both Arabidopsis thaliana (at least 10 copies) and Oryza sativa. Most member proteins have only a short stretch of sequence N-terminal to this domain, but one has a long N-terminal extension that includes a protein kinase domain (pfam00069).
Probab=24.93 E-value=1e+02 Score=24.85 Aligned_cols=33 Identities=21% Similarity=0.323 Sum_probs=26.7
Q ss_pred HhcccCCcEEEEeccCCCccccHHHHHHHHhhCCCcEEe
Q psy15213 72 WKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 110 (139)
Q Consensus 72 ~~~lk~gG~lvYsTCS~~~~ENE~vV~~~l~~~~~~~~~ 110 (139)
+..|.+||+-|+ -||++.-|..+.+++|.++..
T Consensus 55 W~aLN~gGrTvF------LEEd~~~i~~~~~~~p~leay 87 (225)
T TIGR01627 55 WSSLNHRGRTVF------IEEEKIMIAKAEVNPPNTRIY 87 (225)
T ss_pred HHHhcCCCeeEE------ecCCHHHHHHHhhcCCcceEE
Confidence 455678888765 799999999999999987644
No 269
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=24.82 E-value=1.3e+02 Score=25.19 Aligned_cols=32 Identities=22% Similarity=0.182 Sum_probs=23.5
Q ss_pred HHHHHHHhcccCCcEEEEeccCCCccccHHHHHHHHhh
Q psy15213 66 KILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKN 103 (139)
Q Consensus 66 ~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~l~~ 103 (139)
.+|.+++..|+|||.|+- ..||..-|+.+.+.
T Consensus 93 ~~l~~~~~~l~~g~~i~~------~G~~~~g~~s~~k~ 124 (342)
T PRK09489 93 FQLMNLLSLLPVGTDIFV------VGENRSGVRSAEKM 124 (342)
T ss_pred HHHHHHHHhCCCCCEEEE------EEeccccHHHHHHH
Confidence 347788889999999954 67777776666553
No 270
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=24.16 E-value=50 Score=28.26 Aligned_cols=41 Identities=29% Similarity=0.314 Sum_probs=25.9
Q ss_pred CCCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCCc
Q psy15213 23 KNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWF 90 (139)
Q Consensus 23 ~~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~ 90 (139)
.++.||.|=|||= |+ + ...|+.|++.++.||. ++.|||=..
T Consensus 118 ~~~~fD~IDlDPf----GS------------p----------~pfldsA~~~v~~gGl-l~vTaTD~a 158 (377)
T PF02005_consen 118 RQERFDVIDLDPF----GS------------P----------APFLDSALQAVKDGGL-LCVTATDTA 158 (377)
T ss_dssp STT-EEEEEE--S----S------------------------HHHHHHHHHHEEEEEE-EEEEE--HH
T ss_pred ccccCCEEEeCCC----CC------------c----------cHhHHHHHHHhhcCCE-EEEeccccc
Confidence 4679999999986 11 1 4568999999998864 566877543
No 271
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=24.06 E-value=1.4e+02 Score=23.93 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=22.2
Q ss_pred CcEEEEeccCCCccccHHHHHHHHhh
Q psy15213 78 GGKLLFVTCSLWFEESEEQAIIFSKN 103 (139)
Q Consensus 78 gG~lvYsTCS~~~~ENE~vV~~~l~~ 103 (139)
||.++-+.|.+.+....+++.++.+-
T Consensus 302 ~~~il~~gc~i~~~~p~enl~a~v~a 327 (330)
T cd03465 302 GGYILSSGCEIPPDTPIENIKAMIDA 327 (330)
T ss_pred CCEEEeCCCCCCCCCCHHHHHHHHHH
Confidence 78888888999999999999888763
No 272
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=23.99 E-value=38 Score=23.07 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=18.5
Q ss_pred HHHHHHHhcccCCcEEEEeccCC
Q psy15213 66 KILNNLWKMLKPGGKLLFVTCSL 88 (139)
Q Consensus 66 ~lL~~a~~~lk~gG~lvYsTCS~ 88 (139)
..+..+++++++||+++-....-
T Consensus 70 ~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 70 DTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHHHEEEEEEEEEESSTS
T ss_pred HHHHHHHHHhccCCEEEEEEccC
Confidence 46788999999999998765554
No 273
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=23.84 E-value=47 Score=25.50 Aligned_cols=13 Identities=38% Similarity=0.539 Sum_probs=10.9
Q ss_pred CcCEEEEcCCCCC
Q psy15213 26 YFDRILADLPCTG 38 (139)
Q Consensus 26 ~fD~ILlDaPCSg 38 (139)
.||.|++|.|-++
T Consensus 113 ~yD~IIiD~pp~~ 125 (217)
T cd02035 113 LYDVIVFDTAPTG 125 (217)
T ss_pred CCCEEEECCCCch
Confidence 4999999999763
No 274
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=23.27 E-value=2.3e+02 Score=22.81 Aligned_cols=56 Identities=11% Similarity=0.124 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhcccCCcEEEE---eccC-----------CCccccHHHHHHHHhhCCCcEEecCCCcc
Q psy15213 61 SKYSCKILNNLWKMLKPGGKLLF---VTCS-----------LWFEESEEQAIIFSKNHKDSIRLNSPGQL 116 (139)
Q Consensus 61 ~~~Q~~lL~~a~~~lk~gG~lvY---sTCS-----------~~~~ENE~vV~~~l~~~~~~~~~~~~~~~ 116 (139)
...-++|.+.|++++++|..|.. |||. +...-|--.|...|..++++.+.-+.|.+
T Consensus 90 ~~~K~~IA~~Aa~~I~dgd~Ifld~GtT~~~la~~L~~~~~ltVvTnsl~ia~~l~~~~~~~v~llGG~~ 159 (269)
T PRK09802 90 TAMKRSVAKAAVELIQPGHRVILDSGTTTFEIARLMRKHTDVIAMTNGMNVANALLEAEGVELLMTGGHL 159 (269)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEECCchHHHHHHHhcCcCCCeEEEeCCHHHHHHHHhCCCCEEEEECCEE
Confidence 34446888999999999887776 4552 23333445555666666666544333333
No 275
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=23.11 E-value=63 Score=28.38 Aligned_cols=19 Identities=11% Similarity=-0.207 Sum_probs=15.1
Q ss_pred EEEeccCCCccccHHHHHHHHhh
Q psy15213 81 LLFVTCSLWFEESEEQAIIFSKN 103 (139)
Q Consensus 81 lvYsTCS~~~~ENE~vV~~~l~~ 103 (139)
=+||.||.+| .||+..|+.
T Consensus 15 Gi~SVCsahp----~VieAAl~~ 33 (421)
T PRK15052 15 GICSVCSAHP----LVIEAALAF 33 (421)
T ss_pred ceeeECCCCH----HHHHHHHHH
Confidence 4899999998 677776654
No 276
>PF09033 DFF-C: DNA Fragmentation factor 45kDa, C terminal domain; InterPro: IPR015121 The C-terminal domain of DNA fragmentation factor 45 kDa (DFF-C) consists of four alpha-helices, which are folded in a helix-packing arrangement, with alpha-2 and alpha-3 packing against a long C-terminal helix (alpha-4). The main function of this domain is the inhibition of DFF40 by binding to its C-terminal catalytic domain through ionic interactions, thereby inhibiting the fragmentation of DNA in the apoptotic process. In addition to blocking the DNase activity of DFF40, the C-terminal region of DFF45 is also important for the DFF40-specific folding chaperone activity, as demonstrated by the ability of DFF45 to refold DFF40 []. ; PDB: 1KOY_A 1IYR_A.
Probab=23.00 E-value=28 Score=26.57 Aligned_cols=13 Identities=31% Similarity=0.818 Sum_probs=0.0
Q ss_pred EEEEcCCCCCccc
Q psy15213 29 RILADLPCTGSGV 41 (139)
Q Consensus 29 ~ILlDaPCSg~G~ 41 (139)
-+|+|+|||-.-.
T Consensus 49 Q~LiDvpcsdLA~ 61 (164)
T PF09033_consen 49 QVLIDVPCSDLAQ 61 (164)
T ss_dssp -------------
T ss_pred HHHhCCChHHHHH
Confidence 4789999997644
No 277
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=22.93 E-value=54 Score=25.52 Aligned_cols=18 Identities=33% Similarity=0.525 Sum_probs=13.2
Q ss_pred CCcCEEEEcCCCCCccccc
Q psy15213 25 KYFDRILADLPCTGSGVVR 43 (139)
Q Consensus 25 ~~fD~ILlDaPCSg~G~~~ 43 (139)
..||.||+|.|=|- |.+.
T Consensus 118 ~~yD~iiID~pp~l-~~l~ 135 (259)
T COG1192 118 DDYDYIIIDTPPSL-GVLT 135 (259)
T ss_pred cCCCEEEECCCCch-hHHH
Confidence 47999999999444 4443
No 278
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=22.72 E-value=97 Score=26.75 Aligned_cols=28 Identities=7% Similarity=-0.081 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhcccCCcEEEEeccCCC
Q psy15213 62 KYSCKILNNLWKMLKPGGKLLFVTCSLW 89 (139)
Q Consensus 62 ~~Q~~lL~~a~~~lk~gG~lvYsTCS~~ 89 (139)
+.-++.++++.+.-+|.-+.||+||+-.
T Consensus 73 ~~L~~~i~~~~~~~~P~~I~V~tTC~se 100 (422)
T TIGR02015 73 EDVRCSVHKLADPASYDAIVVINLCVPT 100 (422)
T ss_pred HHHHHHHHHHhhcCCCCEEEEECCCcHH
Confidence 4446677777777789999999999886
No 279
>KOG4174|consensus
Probab=22.13 E-value=4e+02 Score=22.19 Aligned_cols=61 Identities=23% Similarity=0.309 Sum_probs=41.9
Q ss_pred CCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhccc-CCcEEEEeccCCCcc
Q psy15213 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLK-PGGKLLFVTCSLWFE 91 (139)
Q Consensus 24 ~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk-~gG~lvYsTCS~~~~ 91 (139)
-+.||.|+.-=|=+|.|.- ++.+ ..-+....++-+..|.+|-+||+ ..|.|+-+--+..|-
T Consensus 135 ~~~~d~IiFNFPH~G~g~~-~e~d------~~~i~~~qkL~rgFle~akemL~~edGeI~itlk~t~P~ 196 (282)
T KOG4174|consen 135 LQRYDNIIFNFPHSGKGIK-FEQD------RNIIPLHQKLFRGFLESAKEMLKDEDGEIHITLKTTYPF 196 (282)
T ss_pred ccccceEEEcCCCCCCCcc-cccc------hHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccCCCC
Confidence 4789999999999999874 2222 12222455666778889999999 777777654444443
No 280
>PF11219 DUF3014: Protein of unknown function (DUF3014); InterPro: IPR021382 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=22.13 E-value=33 Score=26.10 Aligned_cols=40 Identities=15% Similarity=0.206 Sum_probs=29.4
Q ss_pred EEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHH
Q psy15213 31 LADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNN 70 (139)
Q Consensus 31 LlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~ 70 (139)
|+++|=-...+--..|.+.|..-...++.++..|+.||+-
T Consensus 102 lL~aP~~~~pi~l~~~~v~Y~yaDp~LE~Ls~~QK~LlRm 141 (158)
T PF11219_consen 102 LLAAPEPEGPIELVRPSVRYKYADPELEALSAAQKQLLRM 141 (158)
T ss_pred HHcCCCCCCCceeecCceEEEEcChhhhcCCHHHHHHHHc
Confidence 5667744444444466677777788999999999999874
No 281
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=22.12 E-value=2e+02 Score=21.98 Aligned_cols=15 Identities=20% Similarity=-0.086 Sum_probs=12.4
Q ss_pred CCcCEEEEcCCCCCc
Q psy15213 25 KYFDRILADLPCTGS 39 (139)
Q Consensus 25 ~~fD~ILlDaPCSg~ 39 (139)
...+.+|+|=|.+|.
T Consensus 159 ~~p~llllDEP~~gL 173 (224)
T cd03220 159 LEPDILLIDEVLAVG 173 (224)
T ss_pred cCCCEEEEeCCcccC
Confidence 467999999997776
No 282
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=22.10 E-value=89 Score=26.68 Aligned_cols=38 Identities=11% Similarity=0.225 Sum_probs=27.4
Q ss_pred CCHhHHHHHH--HHHHHHHHHHHhcccCCcEEEEeccCCC
Q psy15213 52 RRKNDIKKLS--KYSCKILNNLWKMLKPGGKLLFVTCSLW 89 (139)
Q Consensus 52 ~~~~~~~~l~--~~Q~~lL~~a~~~lk~gG~lvYsTCS~~ 89 (139)
.+.+++-.-. +.-++.+.++.+..+|.-+.||+||.-.
T Consensus 58 l~e~Div~G~~~~~L~~aI~~i~~~~~P~~I~V~tTC~se 97 (407)
T TIGR01279 58 LEESDLSSAAPAEELDRVVEQIKRDRNPSVIFLLSSCTPE 97 (407)
T ss_pred cCchhhhcccchHHHHHHHHHHHhhcCCCEEEEECCchHH
Confidence 3445553222 3557778888888899999999999876
No 283
>PRK05406 LamB/YcsF family protein; Provisional
Probab=21.96 E-value=83 Score=25.64 Aligned_cols=60 Identities=15% Similarity=0.106 Sum_probs=43.2
Q ss_pred cCCHhHHHHHHHHHHHHHHHHH-------hcccCCcEEEEeccCCCccccHHHHHHHHhhCCCcEEec
Q psy15213 51 LRRKNDIKKLSKYSCKILNNLW-------KMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLN 111 (139)
Q Consensus 51 ~~~~~~~~~l~~~Q~~lL~~a~-------~~lk~gG~lvYsTCS~~~~ENE~vV~~~l~~~~~~~~~~ 111 (139)
..+++++..+...|...|.... ..+||-|-| |-.+.-.++--+.+++.+....+++.+.-
T Consensus 78 ~~s~~el~~~v~yQigAL~~~a~~~g~~l~hVKPHGAL-YN~~~~d~~~a~av~~ai~~~~~~l~l~~ 144 (246)
T PRK05406 78 DLSPEELYALVLYQIGALQAIARAAGGRVSHVKPHGAL-YNMAAKDPALADAVAEAVAAVDPSLILVG 144 (246)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCCeeEEeCccHHH-HHHHhcCHHHHHHHHHHHHHhCCCcEEEe
Confidence 4578999999999999998855 467777765 55666666666677766666566655443
No 284
>PF15033 Kinocilin: Kinocilin protein
Probab=21.72 E-value=1.1e+02 Score=22.01 Aligned_cols=49 Identities=29% Similarity=0.377 Sum_probs=33.1
Q ss_pred cCEEEEcCCCCCccccccCCCCC-----ccCCHhHHHHHHHHHHHHHHHHHhcccCCcE
Q psy15213 27 FDRILADLPCTGSGVVRRNPDIP-----WLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80 (139)
Q Consensus 27 fD~ILlDaPCSg~G~~~r~p~~~-----~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~ 80 (139)
+|.|| .+.|.+|-||..- -+-+..--++-++-+..-..+.++.|||||+
T Consensus 66 ldhil-----p~iGnlRIHP~~gpdhgegrss~ngnkEG~RSsLstvsrtleklkpg~r 119 (124)
T PF15033_consen 66 LDHIL-----PAIGNLRIHPHPGPDHGEGRSSANGNKEGARSSLSTVSRTLEKLKPGGR 119 (124)
T ss_pred cccee-----ccCCceeecCCCCCCCCCCCcCcCccchhhhhhHHHHHHHHHhcCCCCC
Confidence 57776 3668888877531 1222233455666688888999999999985
No 285
>TIGR00571 dam DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.
Probab=21.51 E-value=3.2e+02 Score=21.81 Aligned_cols=13 Identities=15% Similarity=0.007 Sum_probs=10.3
Q ss_pred CcCEEEEcCCCCC
Q psy15213 26 YFDRILADLPCTG 38 (139)
Q Consensus 26 ~fD~ILlDaPCSg 38 (139)
.=|.|-||||..+
T Consensus 172 ~~dfvYlDPPY~~ 184 (266)
T TIGR00571 172 DDSFVYCDPPYLP 184 (266)
T ss_pred CCCEEEECCCCCC
Confidence 3468999999854
No 286
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=21.42 E-value=3.4e+02 Score=21.98 Aligned_cols=54 Identities=19% Similarity=0.235 Sum_probs=26.6
Q ss_pred CcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccCCCccccHHHHHHHHhh
Q psy15213 26 YFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKN 103 (139)
Q Consensus 26 ~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS~~~~ENE~vV~~~l~~ 103 (139)
+=-.||+||| +. .+++-.++.. .|..|.+--. .|+.+. +.|.-+..-++.+++.
T Consensus 125 rRglVLIDPp--------------YE-~~~dy~~v~~----~l~~a~kR~~-~G~~~i----WYPi~~~~~~~~~~~~ 178 (245)
T PF04378_consen 125 RRGLVLIDPP--------------YE-QKDDYQRVVD----ALAKALKRWP-TGVYAI----WYPIKDRERVDRFLRA 178 (245)
T ss_dssp S-EEEEE--------------------STTHHHHHHH----HHHHHHHH-T-TSEEEE----EEEESSHHHHHHHHHH
T ss_pred CCeEEEECCC--------------CC-CchHHHHHHH----HHHHHHHhcC-CcEEEE----EeecccHHHHHHHHHH
Confidence 3458999999 32 2335544443 4455555554 454443 4566666677777654
No 287
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=21.35 E-value=57 Score=25.86 Aligned_cols=16 Identities=25% Similarity=0.370 Sum_probs=12.5
Q ss_pred CCCcCEEEEcCCCCCc
Q psy15213 24 NKYFDRILADLPCTGS 39 (139)
Q Consensus 24 ~~~fD~ILlDaPCSg~ 39 (139)
...||+|++|.|=+|.
T Consensus 122 ~~~yD~VVvDtpPtg~ 137 (254)
T cd00550 122 EAEYDVVVFDTAPTGH 137 (254)
T ss_pred cCCCCEEEECCCCcHH
Confidence 3479999999876654
No 288
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=21.26 E-value=3e+02 Score=21.66 Aligned_cols=44 Identities=27% Similarity=0.427 Sum_probs=32.6
Q ss_pred CCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHHhcccCCcEEEEeccC
Q psy15213 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 87 (139)
Q Consensus 24 ~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~~~lk~gG~lvYsTCS 87 (139)
+..||.|+.=.| ........ -.+||+.++..+..||.+|--|-+
T Consensus 115 gq~~D~viS~lP-------------ll~~P~~~-------~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 115 GQFFDSVISGLP-------------LLNFPMHR-------RIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred CCeeeeEEeccc-------------cccCcHHH-------HHHHHHHHHHhcCCCCeEEEEEec
Confidence 568999998888 22222222 267889999999999999987777
No 289
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=21.08 E-value=1.6e+02 Score=25.60 Aligned_cols=43 Identities=16% Similarity=-0.044 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhcccCCcEEEEeccCCC-cccc-HHHHHHHHhhCC
Q psy15213 63 YSCKILNNLWKMLKPGGKLLFVTCSLW-FEES-EEQAIIFSKNHK 105 (139)
Q Consensus 63 ~Q~~lL~~a~~~lk~gG~lvYsTCS~~-~~EN-E~vV~~~l~~~~ 105 (139)
.-++.+.++.+..+|.-+.||+||.-. .-++ +.++..+-++.|
T Consensus 79 ~L~~aI~~~~~~~~P~~I~V~ttC~~eiIGDDi~~v~~~~~~~~p 123 (455)
T PRK14476 79 NVEEAILNICKKAKPKIIGLCTTGLTETRGDDVAGALKEIRARHP 123 (455)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCcchHhhhhccHHHHHHHHHhhcc
Confidence 335566677776789999999999543 5555 455555555554
No 290
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=21.06 E-value=57 Score=24.43 Aligned_cols=11 Identities=64% Similarity=1.147 Sum_probs=10.1
Q ss_pred CCcCEEEEcCC
Q psy15213 25 KYFDRILADLP 35 (139)
Q Consensus 25 ~~fD~ILlDaP 35 (139)
..||.||+|.|
T Consensus 126 ~~yD~ViiD~p 136 (204)
T TIGR01007 126 KYFDYIIIDTP 136 (204)
T ss_pred hcCCEEEEeCC
Confidence 57999999999
No 291
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=20.96 E-value=1.3e+02 Score=25.74 Aligned_cols=40 Identities=13% Similarity=0.168 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhcccCCcEEEEeccCCC-ccccHHHHHHHH
Q psy15213 62 KYSCKILNNLWKMLKPGGKLLFVTCSLW-FEESEEQAIIFS 101 (139)
Q Consensus 62 ~~Q~~lL~~a~~~lk~gG~lvYsTCS~~-~~ENE~vV~~~l 101 (139)
+.-++.+.++.+..+|..+.||+||+.. .-++-+.|.+-+
T Consensus 75 ~kL~~aI~~~~~~~~P~~I~V~ttC~~~iIGdDi~~v~~~~ 115 (426)
T cd01972 75 KKLEDTIKEAYSRYKPKAIFVATSCATGIIGDDVESVVEEL 115 (426)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCChHHHhccCHHHHHHHH
Confidence 3445667777777799999999999776 334433333333
No 292
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=20.93 E-value=1.7e+02 Score=18.26 Aligned_cols=30 Identities=30% Similarity=0.357 Sum_probs=23.7
Q ss_pred HHHHHHHHHhcccCCcEEEEeccCCCcccc
Q psy15213 64 SCKILNNLWKMLKPGGKLLFVTCSLWFEES 93 (139)
Q Consensus 64 Q~~lL~~a~~~lk~gG~lvYsTCS~~~~EN 93 (139)
....+......++++|.++.+.........
T Consensus 134 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 163 (257)
T COG0500 134 PAKALRELLRVLKPGGRLVLSDLLRDGLLE 163 (257)
T ss_pred HHHHHHHHHHhcCCCcEEEEEeccCCCCcc
Confidence 467788888889999999998888665543
No 293
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=20.93 E-value=92 Score=24.60 Aligned_cols=43 Identities=16% Similarity=0.247 Sum_probs=26.7
Q ss_pred HHHHHHHHhcccCCcEEE-EeccC----CCccccHHHHHHHHhhCCCc
Q psy15213 65 CKILNNLWKMLKPGGKLL-FVTCS----LWFEESEEQAIIFSKNHKDS 107 (139)
Q Consensus 65 ~~lL~~a~~~lk~gG~lv-YsTCS----~~~~ENE~vV~~~l~~~~~~ 107 (139)
..|+..|.++|++||.|+ |.-=. ++++-|++-=+++-.+.|.+
T Consensus 121 ~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~ 168 (204)
T PF06080_consen 121 EGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEW 168 (204)
T ss_pred HHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCc
Confidence 578889999999999765 44333 33455555444444445543
No 294
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=20.73 E-value=62 Score=26.42 Aligned_cols=15 Identities=20% Similarity=0.182 Sum_probs=13.3
Q ss_pred CCcCEEEEcCCCCCc
Q psy15213 25 KYFDRILADLPCTGS 39 (139)
Q Consensus 25 ~~fD~ILlDaPCSg~ 39 (139)
-..+++|+|=|||+.
T Consensus 166 v~PeVlLmDEPtSAL 180 (253)
T COG1117 166 VKPEVLLMDEPTSAL 180 (253)
T ss_pred cCCcEEEecCccccc
Confidence 467999999999988
No 295
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=20.44 E-value=74 Score=21.16 Aligned_cols=45 Identities=18% Similarity=0.400 Sum_probs=22.7
Q ss_pred cccCCCCcCEEEEcCCCCCccccccCCCCCccCCHhHHHHHHHHHHHHHHHHH--hcccCCcEEEEe
Q psy15213 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLW--KMLKPGGKLLFV 84 (139)
Q Consensus 20 ~~~~~~~fD~ILlDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~lL~~a~--~~lk~gG~lvYs 84 (139)
.+..+.+||.+|.|.- -...|+|+..+. ..+|+ ..++||-.+.|.
T Consensus 19 ~f~sgq~~D~~v~d~~----------g~~vwrwS~~~~----------FtQal~~~~l~pGe~~~~~ 65 (82)
T PF12690_consen 19 QFPSGQRYDFVVKDKE----------GKEVWRWSDGKM----------FTQALQEETLEPGESLTYE 65 (82)
T ss_dssp EESSS--EEEEEE-TT------------EEEETTTT-----------------EEEEE-TT-EEEEE
T ss_pred EeCCCCEEEEEEECCC----------CCEEEEecCCch----------hhheeeEEEECCCCEEEEE
Confidence 4667889999999876 233577775443 44555 367888888873
No 296
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=20.31 E-value=2.3e+02 Score=22.09 Aligned_cols=15 Identities=7% Similarity=0.040 Sum_probs=12.2
Q ss_pred CCcCEEEEcCCCCCc
Q psy15213 25 KYFDRILADLPCTGS 39 (139)
Q Consensus 25 ~~fD~ILlDaPCSg~ 39 (139)
...+.+|+|=|++|.
T Consensus 173 ~~p~llllDEPt~gL 187 (257)
T cd03288 173 RKSSILIMDEATASI 187 (257)
T ss_pred cCCCEEEEeCCccCC
Confidence 356899999997776
No 297
>PF03161 LAGLIDADG_2: LAGLIDADG DNA endonuclease family; InterPro: IPR004860 This is a family of site-specific DNA endonucleases encoded by DNA mobile elements. Similar to the homing endonuclease LAGLIDADG/HNH domain (IPR001982 from INTERPRO), the members of this family are also LAGLIDADG endonucleases. ; GO: 0004519 endonuclease activity; PDB: 3OOR_A 3OOL_A 3C0W_A 1R7M_A 3C0X_A.
Probab=20.21 E-value=58 Score=24.37 Aligned_cols=30 Identities=27% Similarity=0.204 Sum_probs=20.0
Q ss_pred ccCCcEEEEeccCCCccccHHHHHHHHhhC
Q psy15213 75 LKPGGKLLFVTCSLWFEESEEQAIIFSKNH 104 (139)
Q Consensus 75 lk~gG~lvYsTCS~~~~ENE~vV~~~l~~~ 104 (139)
...++.++.+|.|++.+|++-.++.+..++
T Consensus 121 ~~~~~g~~l~T~sFt~~Ev~~L~~~L~~kf 150 (178)
T PF03161_consen 121 SKKGRGIRLCTNSFTKEEVERLQNILKTKF 150 (178)
T ss_dssp T-S---EEE--TTS-HHHHHHHHHHHHHHH
T ss_pred cCCCCcEEEEECCCCHHHHHHHHHHHHHHh
Confidence 356778999999999999999998888876
No 298
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=20.03 E-value=3.5e+02 Score=20.15 Aligned_cols=15 Identities=20% Similarity=-0.004 Sum_probs=12.2
Q ss_pred CCcCEEEEcCCCCCc
Q psy15213 25 KYFDRILADLPCTGS 39 (139)
Q Consensus 25 ~~fD~ILlDaPCSg~ 39 (139)
...+.+|+|=|++|.
T Consensus 142 ~~p~llllDEPt~~L 156 (201)
T cd03231 142 SGRPLWILDEPTTAL 156 (201)
T ss_pred cCCCEEEEeCCCCCC
Confidence 467899999997776
Done!