RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15213
(139 letters)
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet,
methyltransferase-fold, RNA-binding domain; 1.65A
{Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Length = 429
Score = 152 bits (387), Expect = 8e-46
Identities = 47/123 (38%), Positives = 70/123 (56%), Gaps = 9/123 (7%)
Query: 21 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 80
+ + FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK GG
Sbjct: 310 WCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGT 369
Query: 81 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPG------QLLPTVNKKQDYDGFFYSLF 134
L++ TCS+ EE+ Q F + D+ + Q LP ++ DGFFY+
Sbjct: 370 LVYATCSVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPG---AEEGDGFFYAKL 426
Query: 135 QKR 137
K+
Sbjct: 427 IKK 429
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog,
methyltransferase, structural genomics, NPPSFA; HET:
SFG; 2.55A {Pyrococcus horikoshii}
Length = 450
Score = 140 bits (354), Expect = 9e-41
Identities = 37/130 (28%), Positives = 67/130 (51%), Gaps = 14/130 (10%)
Query: 20 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 79
+ D++L D PCT SG + +NP++ W R++ I ++S+ ++L + +++KPGG
Sbjct: 324 EIIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGG 383
Query: 80 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPG-----------QLLPTVNKKQDYDG 128
+LL+ TCS++ EE+E+ F H + + + P + G
Sbjct: 384 RLLYTTCSIFKEENEKNIRWFLNVHPEFKLVPLKSPYDPGFLEGTMRAWPH---RHSTIG 440
Query: 129 FFYSLFQKRK 138
FFY+L +K K
Sbjct: 441 FFYALLEKSK 450
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase,
structural genomics, structural genomics consortium,
SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Length = 309
Score = 104 bits (262), Expect = 2e-28
Identities = 25/130 (19%), Positives = 49/130 (37%), Gaps = 18/130 (13%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIK--KLSKYSCKILNNLWKMLKPGGKLLFV 84
IL D C+GSG+ R + P + ++ L+ + + L + +L++
Sbjct: 175 VHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALT-FPSLQRLVYS 233
Query: 85 TCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVN---------------KKQDYDGF 129
TCSL EE+E+ + + + RL P + GF
Sbjct: 234 TCSLCQEENEDVVRDALQQNPGAFRLAPALPAWPHRGLSTFPGAEHCLRASPETTLSSGF 293
Query: 130 FYSLFQKRKE 139
F ++ ++ +
Sbjct: 294 FVAVIERVEV 303
>2frx_A Hypothetical protein YEBU; rossmann-type
S-adenosylmethionine-dependent methyltransfera domain;
2.90A {Escherichia coli}
Length = 479
Score = 102 bits (255), Expect = 1e-26
Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 13/127 (10%)
Query: 26 YFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 85
FD IL D PC+G GVVR++PD ++++ +++++ + L+PGG L++ T
Sbjct: 187 MFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYST 246
Query: 86 CSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNK-------------KQDYDGFFYS 132
C+L EE+E + + + D++ G L P NK D +GFF +
Sbjct: 247 CTLNQEENEAVCLWLKETYPDAVEFLPLGDLFPGANKALTEEGFLHVFPQIYDCEGFFVA 306
Query: 133 LFQKRKE 139
+K +
Sbjct: 307 RLRKTQA 313
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii}
SCOP: c.66.1.38
Length = 315
Score = 98.4 bits (246), Expect = 6e-26
Identities = 40/130 (30%), Positives = 59/130 (45%), Gaps = 17/130 (13%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
N FD+IL D PCTGSG + +NP+ W R +DIK ++L ++LKPGG L++
Sbjct: 185 NVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVY 244
Query: 84 VTCSLWFEESEEQAIIFSKNHK---DSIRLNSPG-------QLLPTVNK-------KQDY 126
TCSL EE+E N ++ P +L + +
Sbjct: 245 STCSLEPEENEFVIQWALDNFDVELLPLKYGEPALTNPFGIELSEEIKNARRLYPDVHET 304
Query: 127 DGFFYSLFQK 136
GFF + +K
Sbjct: 305 SGFFIAKIRK 314
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold,
structural genomics, riken structu genomics/proteomics
initiative; 1.27A {Methanocaldococcus jannaschii} PDB:
3a4t_A
Length = 274
Score = 96.5 bits (241), Expect = 1e-25
Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 15/125 (12%)
Query: 23 KNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLL 82
+FD+IL D PC+G+ + +N ++ + DIK S ++++ +LK G+L+
Sbjct: 153 NEIFFDKILLDAPCSGNIIKDKNRNV----SEEDIKYCSLRQKELIDIGIDLLKKDGELV 208
Query: 83 FVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDY-----------DGFFY 131
+ TCS+ EE+EE + D + +N K+ Y + FF
Sbjct: 209 YSTCSMEVEENEEVIKYILQKRNDVELIIIKANEFKGINIKEGYIKGTLRVFPPNEPFFI 268
Query: 132 SLFQK 136
+ +K
Sbjct: 269 AKLRK 273
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF,
adoMet, MULT specific, methyltransferase, transferase;
HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A*
3m6u_A* 3m6x_A*
Length = 464
Score = 95.1 bits (237), Expect = 4e-24
Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 19/131 (14%)
Query: 26 YFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 85
YF R+L D PC+G G+ R++ + + K++++ +L ++L PGG L++ T
Sbjct: 170 YFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYST 229
Query: 86 CSLWFEESEEQAIIFSKNHKD----SIRLNSPG--------QLLPTVNK-------KQDY 126
C+ EE+E F K H + RL+ + P + K + +
Sbjct: 230 CTFAPEENEGVVAHFLKAHPEFRLEDARLHPLFAPGVPEWGEGNPELLKTARLWPHRLEG 289
Query: 127 DGFFYSLFQKR 137
+G F + F+K
Sbjct: 290 EGHFLARFRKE 300
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif,
transferase; 2.28A {Enterococcus faecium}
Length = 456
Score = 93.9 bits (234), Expect = 1e-23
Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 17/131 (12%)
Query: 26 YFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 85
+FDRI+ D PC+G G+ R++P+ + K +IL++ KMLK G+L++ T
Sbjct: 175 FFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYST 234
Query: 86 CSLWFEESEEQAIIFSKNHKDSIRLNSPGQLL----------PTVNK-------KQDYDG 128
C+ EE+EE +N+ +I Q + + K K +G
Sbjct: 235 CTFAPEENEEIISWLVENYPVTIEEIPLTQSVSSGRSEWGSVAGLEKTIRIWPHKDQGEG 294
Query: 129 FFYSLFQKRKE 139
F + +
Sbjct: 295 HFVAKLTFHGQ 305
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural
genomics, PSI, protein structure initiative; 1.80A
{Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Length = 396
Score = 33.6 bits (77), Expect = 0.014
Identities = 14/79 (17%), Positives = 32/79 (40%), Gaps = 13/79 (16%)
Query: 23 KNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLL 82
K + FD ++ D P +++ + D+K + + ++K GG L+
Sbjct: 286 KGEKFDIVVLDPP-------------AFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILV 332
Query: 83 FVTCSLWFEESEEQAIIFS 101
+CS + + +I +
Sbjct: 333 TCSCSQHVDLQMFKDMIIA 351
>2b78_A Hypothetical protein SMU.776; structure genomics,
methyltransferase, caries, structural genomics, unknown
function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9
c.66.1.51 PDB: 3ldf_A*
Length = 385
Score = 31.8 bits (73), Expect = 0.060
Identities = 10/50 (20%), Positives = 22/50 (44%)
Query: 52 RRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFS 101
R K ++ +SK K++ ++L G ++ T + S+ + I
Sbjct: 298 RNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEK 347
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural
genomics, joint center for structural genom JCSG; HET:
SAH; 2.10A {Pseudomonas putida KT2440}
Length = 227
Score = 31.3 bits (71), Expect = 0.067
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 66 KILNNLWKMLKPGGKLLFVTCSLWFEESEEQ 96
++L+ + +L PGG L+ T W +
Sbjct: 133 ELLSAMRTLLVPGGALVIQTLHPWSVADGDY 163
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics
consortium (NESG), PSI-2, protein structure initiative,
unknown function; NMR {Synechocystis} PDB: 3mer_A
Length = 202
Score = 30.6 bits (69), Expect = 0.10
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 6/52 (11%)
Query: 66 KILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLL 117
++ +++ LKPGG + F + EQ + KD L L
Sbjct: 112 QLYPKVYQGLKPGGVFILEG----F--APEQLQYNTGGPKDLDLLPKLETLQ 157
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic
resistance, aminoglycoside, S-adenosyl-L-methionine;
HET: SAH; 1.69A {Streptomyces SP}
Length = 218
Score = 30.8 bits (69), Expect = 0.11
Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 3/74 (4%)
Query: 23 KNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLL 82
N + A+ SGV + +PW + + S ++L + + +PG L
Sbjct: 81 PNLLYLWATAERLPPLSGVGELHVLMPWGSLL---RGVLGSSPEMLRGMAAVCRPGASFL 137
Query: 83 FVTCSLWFEESEEQ 96
+ S +
Sbjct: 138 VALNLHAWRPSVPE 151
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus,
methyltransferase, adoMet, structural genomics; 1.80A
{Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB:
1wxw_A 2cww_A*
Length = 382
Score = 30.8 bits (70), Expect = 0.11
Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 13/79 (16%)
Query: 23 KNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLL 82
+ + FD ++ D P + + K D+++ + ++ K+LK GG L
Sbjct: 276 EGERFDLVVLDPP-------------AFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILA 322
Query: 83 FVTCSLWFEESEEQAIIFS 101
+CS E A++
Sbjct: 323 TASCSHHMTEPLFYAMVAE 341
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent
methyltransferase fold; 2.00A {Escherichia coli K12}
Length = 396
Score = 30.4 bits (69), Expect = 0.14
Identities = 12/50 (24%), Positives = 18/50 (36%)
Query: 52 RRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFS 101
K+ + + I ++L GG LL +CS Q II
Sbjct: 306 ENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIAD 355
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 30.3 bits (68), Expect = 0.16
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 66 KILNNLWKMLKPGGKLLFVT 85
++ + PGG + FV
Sbjct: 127 AFWESVRSAVAPGGVVEFVD 146
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate,
tailoring enzyme, polyketide, S-adenosyl-L-homocystein;
HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP:
a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Length = 360
Score = 30.0 bits (68), Expect = 0.20
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 66 KILNNLWKMLKPGGKLL 82
+IL + L+PGG++L
Sbjct: 269 RILTRCAEALEPGGRIL 285
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH;
1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A*
3mte_A*
Length = 225
Score = 29.8 bits (66), Expect = 0.23
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 47 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 85
PW ++ + K + IL+N+ + K FVT
Sbjct: 104 LFPW---GTLLEYVIKPNRDILSNVADLAKKEAHFEFVT 139
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.24
Identities = 7/27 (25%), Positives = 14/27 (51%), Gaps = 4/27 (14%)
Query: 94 EEQAIIFSKNHKDSIRLNSPGQLLPTV 120
E+QA+ K + S++L + P +
Sbjct: 18 EKQAL---KKLQASLKLYADDS-APAL 40
Score = 28.4 bits (62), Expect = 0.59
Identities = 6/25 (24%), Positives = 9/25 (36%), Gaps = 8/25 (32%)
Query: 54 KNDIKKLSKYSCKILNNLWKMLKPG 78
K +KKL +L K+
Sbjct: 19 KQALKKLQ-------ASL-KLYADD 35
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH;
2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A*
3i5u_A* 3i64_A*
Length = 332
Score = 29.9 bits (68), Expect = 0.25
Identities = 5/17 (29%), Positives = 7/17 (41%)
Query: 66 KILNNLWKMLKPGGKLL 82
IL + GG +L
Sbjct: 255 AILRRCAEAAGSGGVVL 271
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine,
transferase; HET: MSE SAH; 1.91A {Streptomyces
lavendulae} PDB: 3gxo_A*
Length = 369
Score = 29.2 bits (66), Expect = 0.38
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 66 KILNNLWKMLKPGGKLL 82
+IL + +KP +LL
Sbjct: 288 RILRRIATAMKPDSRLL 304
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase,
S-adenosyl-methionine, 23S ribosoma transferase; HET:
SAM; 1.70A {Thermus thermophilus}
Length = 393
Score = 29.2 bits (66), Expect = 0.45
Identities = 6/50 (12%), Positives = 19/50 (38%)
Query: 52 RRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFS 101
+R ++ + ++ ++ ++L G L +CS + +
Sbjct: 293 KRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLRLEDLLEVARR 342
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline,
methyltransferase, polyketide, tailoring enzymes,
structural proteomics in E spine; HET: SAM; 2.10A
{Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12
PDB: 1r00_A* 1xds_A* 1xdu_A*
Length = 374
Score = 28.9 bits (65), Expect = 0.48
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 66 KILNNLWKMLKPGGKLL 82
IL + L+PGG+LL
Sbjct: 268 TILRGCVRALEPGGRLL 284
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD
factor, fixation, symbiosis, alpha/beta structure; HET:
SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Length = 216
Score = 28.6 bits (64), Expect = 0.51
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 66 KILNNLWKMLKPGGKLLFVT 85
++N+ KML PGG L+F +
Sbjct: 135 TAIDNMVKMLAPGGHLVFGS 154
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon
SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Length = 383
Score = 28.9 bits (64), Expect = 0.51
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 66 KILNNLWKMLKPGGKLLFVTCSLWFEESEEQA 97
+ + ++L+ GG+L F SE
Sbjct: 184 ALFKEIHRVLRDGGELYFSDVYADRRLSEAAQ 215
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU
genomics, PSI-2, protein structure initiative; HET: SAH;
2.40A {Micromonospora echinospora}
Length = 348
Score = 28.8 bits (65), Expect = 0.55
Identities = 5/17 (29%), Positives = 11/17 (64%)
Query: 66 KILNNLWKMLKPGGKLL 82
+IL N +++ G++L
Sbjct: 267 RILTNCRRVMPAHGRVL 283
>2gp6_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiolase fold,
structural genomics, PSI, protein structure initiative;
2.40A {Mycobacterium tuberculosis}
Length = 434
Score = 28.6 bits (65), Expect = 0.55
Identities = 7/38 (18%), Positives = 13/38 (34%), Gaps = 2/38 (5%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYS 64
DLP G + D L R +++++
Sbjct: 65 PFVEEFDLPVRIGGHLLEEFD-HQLTRI-ELRRMGYLQ 100
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich,
structural genomics, PSI-2, protein structure
initiative; 2.21A {Corynebacterium diphtheriae}
Length = 178
Score = 28.6 bits (64), Expect = 0.55
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 66 KILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 110
+ WK L GG+L+ ++ ESE+ K +I
Sbjct: 108 GVFAAAWKRLPVGGRLVANAVTV---ESEQMLWALRKQFGGTISS 149
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate,
protein-product complex; HET: SAH HCC; 1.82A {Medicago
sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Length = 372
Score = 28.7 bits (64), Expect = 0.59
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 66 KILNNLWKMLKPGGKLL 82
+ L+N K L P GK++
Sbjct: 287 EFLSNCHKALSPNGKVI 303
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 28.1 bits (63), Expect = 0.65
Identities = 11/75 (14%), Positives = 28/75 (37%), Gaps = 9/75 (12%)
Query: 66 KILNNLWKMLKPGGKLLFVTCS---------LWFEESEEQAIIFSKNHKDSIRLNSPGQL 116
+++ + ++LK G+++ + L E+ + + N R N
Sbjct: 93 HVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFSNFVVEKRFNPTPYH 152
Query: 117 LPTVNKKQDYDGFFY 131
V K++ +G +
Sbjct: 153 FGLVLKRKTSEGHHH 167
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold,
protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo
sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A*
2aox_A* 1jqe_A* 2aow_A*
Length = 292
Score = 28.5 bits (63), Expect = 0.68
Identities = 4/20 (20%), Positives = 7/20 (35%)
Query: 66 KILNNLWKMLKPGGKLLFVT 85
L +L K+L +
Sbjct: 153 ATLKFFHSLLGTNAKMLIIV 172
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural
genomics, beta barrel, rossmann fold, tetramer; HET:
SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP:
c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Length = 192
Score = 28.1 bits (63), Expect = 0.75
Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 67 ILNNLWKMLKPGGKLLFVTCSLWFEESEEQAI 98
IL + LKPGG+++ L E++ +A+
Sbjct: 116 ILRIIKDKLKPGGRIIVTAILL---ETKFEAM 144
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 28.2 bits (63), Expect = 0.80
Identities = 5/33 (15%), Positives = 14/33 (42%)
Query: 66 KILNNLWKMLKPGGKLLFVTCSLWFEESEEQAI 98
+ ++ + LK GG+ + + +A+
Sbjct: 135 AAIASIHQALKSGGRFVAEFGGKGNIKYILEAL 167
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint
center for structural genomics, JCSG; HET: SAH; 2.11A
{Anabaena variabilis atcc 29413}
Length = 245
Score = 28.1 bits (62), Expect = 0.81
Identities = 3/19 (15%), Positives = 8/19 (42%)
Query: 67 ILNNLWKMLKPGGKLLFVT 85
+ +L +L G + +
Sbjct: 145 LGQSLRILLGKQGAMYLIE 163
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin,
phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Length = 334
Score = 28.4 bits (64), Expect = 0.81
Identities = 3/17 (17%), Positives = 10/17 (58%)
Query: 66 KILNNLWKMLKPGGKLL 82
++L N + + G+++
Sbjct: 253 RLLGNCREAMAGDGRVV 269
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation
mutagenesis, regioselectivity transferase; HET: SAH EUG;
1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A*
Length = 368
Score = 27.9 bits (62), Expect = 1.0
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 66 KILNNLWKMLKPGGKLL 82
K+L N + L GK++
Sbjct: 281 KLLKNCYAALPDHGKVI 297
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel,
structural genomics, PSI-2 structure initiative; HET:
MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP:
c.66.1.51
Length = 332
Score = 27.8 bits (62), Expect = 1.0
Identities = 7/48 (14%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 53 RKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT-CSLWFEESEEQAII 99
++ +L + +L+ ++L P L +T S+ ++
Sbjct: 240 THGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELM 287
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase
binding, liver cytosol, transferase-transferase
inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus}
PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 293
Score = 28.1 bits (62), Expect = 1.1
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 66 KILNNLWKMLKPGGKLLF 83
L N+ M++PGG L+
Sbjct: 156 LALKNIASMVRPGGLLVI 173
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent
O-methyltransferase; HET: SAH; 1.80A {Lolium perenne}
PDB: 3p9i_A* 3p9k_A*
Length = 364
Score = 27.9 bits (62), Expect = 1.3
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 66 KILNNLWKMLKPGGKLL 82
+L N + L GK++
Sbjct: 279 TLLKNCYDALPAHGKVV 295
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MCSG, midwest center for
structural genomics; 2.19A {Deinococcus radiodurans}
Length = 226
Score = 27.3 bits (60), Expect = 1.7
Identities = 4/18 (22%), Positives = 8/18 (44%)
Query: 68 LNNLWKMLKPGGKLLFVT 85
+ L ++ P L+V
Sbjct: 125 ILRLPELAAPDAHFLYVG 142
>2r3s_A Uncharacterized protein; methyltransferase domain, structural
genomics, joint center structural genomics, JCSG,
protein structure initiative; HET: MSE; 2.15A {Nostoc
punctiforme}
Length = 335
Score = 27.3 bits (61), Expect = 1.7
Identities = 4/17 (23%), Positives = 9/17 (52%)
Query: 66 KILNNLWKMLKPGGKLL 82
++L + L GK++
Sbjct: 252 QLLRKIKTALAVEGKVI 268
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase
domain, structural genomics; HET: NHE CIT; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 195
Score = 27.1 bits (60), Expect = 1.8
Identities = 4/18 (22%), Positives = 8/18 (44%)
Query: 66 KILNNLWKMLKPGGKLLF 83
L N+ + L G+ +
Sbjct: 128 PALANIHRALGADGRAVI 145
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2,
protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 26.7 bits (59), Expect = 2.1
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 68 LNNLWKMLKPGGKLLFVT 85
+ ++L GGK++F
Sbjct: 128 IAKYSQLLNKGGKIVFAD 145
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase,
tryptophan biosynthesis, pyridoxal phosphate; HET: IPL
PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB:
1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A*
1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A*
1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Length = 268
Score = 26.7 bits (60), Expect = 2.2
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 5/45 (11%)
Query: 90 FEESEEQAIIFSKNHKDSIRL---NSPGQLLPTVNKKQDYDGFFY 131
EES +++ I + N+ LL V G+ Y
Sbjct: 133 VEESAPFRQAALRHNIAPIFICPPNADDDLLRQVASYG--RGYTY 175
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase;
structural genomics, PSI-2, protein structure
initiative; 2.35A {Listeria monocytogenes str}
Length = 253
Score = 26.8 bits (59), Expect = 2.3
Identities = 7/44 (15%), Positives = 11/44 (25%)
Query: 66 KILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIR 109
I ++ LK G +F F Q +
Sbjct: 126 DICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHW 169
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; HET:
SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 26.6 bits (59), Expect = 2.4
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 66 KILNNLWKMLKPGGKLLFVTCS 87
K L L ++ KP L +
Sbjct: 124 KFLEELKRVAKPFAYLAIIDWK 145
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll,
BCHU, SAM, SAH, adenosylmethyonine,
S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium
tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Length = 359
Score = 27.0 bits (60), Expect = 2.4
Identities = 4/17 (23%), Positives = 9/17 (52%)
Query: 66 KILNNLWKMLKPGGKLL 82
+ + ++ GG+LL
Sbjct: 276 IMCKKAFDAMRSGGRLL 292
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAM;
1.60A {Rhodopseudomonas palustris}
Length = 211
Score = 26.7 bits (59), Expect = 2.7
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 66 KILNNLWKMLKPGGKLLF 83
+L +W+ LKPGG
Sbjct: 122 DVLKLIWRALKPGGLFYA 139
>4fqd_A NIKO protein; beta/alpha inverse barrel, enolpyruvyl transferase,
fosfomyc binding, transferase; 2.50A {Streptomyces
tendae}
Length = 479
Score = 26.8 bits (60), Expect = 2.7
Identities = 4/25 (16%), Positives = 7/25 (28%)
Query: 105 KDSIRLNSPGQLLPTVNKKQDYDGF 129
D + + + L V G
Sbjct: 315 ADEVTAHPLTKPLRPVEFTAMSRGV 339
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250,
NESG, structural genomics, PSI-2; HET: SAM; 1.68A
{Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A*
3t7r_A* 3t7t_A*
Length = 267
Score = 26.8 bits (59), Expect = 2.7
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 66 KILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIF 100
+ LN K LK GG L CS + +E + F
Sbjct: 131 RGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDF 165
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo
sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A*
2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A*
3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A*
3kqm_A* 3kqo_A* 3kqp_A* ...
Length = 289
Score = 26.7 bits (58), Expect = 2.9
Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 15/86 (17%)
Query: 65 CKILNNLWKMLKPGGKLLFVTC--------------SLWFEESEEQAIIFSKNHKDSIRL 110
+ L+++ +L+PGG LL + + E E + ++ L
Sbjct: 195 QRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVRE-ALVRSGYKVRDL 253
Query: 111 NSPGQLLPTVNKKQDYDGFFYSLFQK 136
+ D G F++ QK
Sbjct: 254 RTYIMPAHLQTGVDDVKGVFFAWAQK 279
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics,
PSI-biology, protein structure in northeast structural
genomics; 2.20A {Methanosarcina mazei}
Length = 235
Score = 26.7 bits (59), Expect = 3.0
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 66 KILNNLWKMLKPGGKLLFVTCS 87
+I+ ++++LKPG L V
Sbjct: 122 RIIKEVFRVLKPGAYLYLVEFG 143
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor
methylation; HET: SAH; 2.00A {Salmonella typhimurium}
SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Length = 274
Score = 26.4 bits (59), Expect = 3.2
Identities = 9/19 (47%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
Query: 66 KILNNLWKMLKPGGKLLFV 84
IL +LKP G LLF
Sbjct: 233 DILRRFVPLLKPDG-LLFA 250
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 26.4 bits (58), Expect = 3.3
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 66 KILNNLWKMLKPGGKLLFVTCSLWFEESEEQ 96
+ LN + ++LK G + E
Sbjct: 134 RALNEIKRVLKSDGYACIAILGPTAKPRENS 164
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 252
Score = 26.3 bits (58), Expect = 3.4
Identities = 6/45 (13%), Positives = 20/45 (44%)
Query: 66 KILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 110
K+ + + + LKPGG + ++ + + + ++ + +
Sbjct: 126 KLFSKVAEALKPGGVFITDFPCWFYGGRDGPVVWNEQKGEEKLVI 170
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium,
SGC, methyltransferase, LOC84291, transferase; HET: SAH;
1.30A {Homo sapiens}
Length = 215
Score = 26.1 bits (57), Expect = 3.4
Identities = 8/43 (18%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 45 NPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 87
PW + + + L+ + ++L PGG+ + +T +
Sbjct: 123 GERDPWTVSSEGVHTVDQV----LSEVSRVLVPGGRFISMTSA 161
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural
genomics, CSG center for structural genomics of
infectious diseases; 2.10A {Vibrio cholerae o1 biovar el
tor}
Length = 271
Score = 26.4 bits (59), Expect = 3.6
Identities = 8/45 (17%), Positives = 14/45 (31%), Gaps = 5/45 (11%)
Query: 90 FEESEEQAIIFSKNHKDSIRL---NSPGQLLPTVNKKQDYDGFFY 131
ES+ K I + + + L V + G+ Y
Sbjct: 136 TNESQPFVAAAEKFGIQPIFIAPPTASDETLRAVAQLG--KGYTY 178
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein;
ubiquinone/menaquinone biosynthesis
methyltransferase-relate protein; HET: SAI; 2.35A
{Thermotoga maritima} SCOP: c.66.1.41
Length = 260
Score = 26.4 bits (58), Expect = 3.6
Identities = 5/24 (20%), Positives = 12/24 (50%)
Query: 66 KILNNLWKMLKPGGKLLFVTCSLW 89
K + + ++L P G L+ + +
Sbjct: 133 KAFSEIRRVLVPDGLLIATVDNFY 156
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural
genomics, BSGC structure funded by NIH; 1.80A
{Methanocaldococcus jannaschii} SCOP: c.66.1.4
Length = 194
Score = 26.1 bits (58), Expect = 3.7
Identities = 5/19 (26%), Positives = 11/19 (57%)
Query: 66 KILNNLWKMLKPGGKLLFV 84
+I+ ++LK G++ V
Sbjct: 138 RIIEEGKELLKDNGEIWVV 156
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for
structural genomics of infec diseases, csgid, lyase;
2.37A {Campylobacter jejuni}
Length = 252
Score = 26.0 bits (58), Expect = 3.9
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Query: 90 FEESEEQAIIFSKNHKDSIRL---NSPGQLLPTVNKKQDYDGFFY 131
FEES++ + + I L +P + + + K GF Y
Sbjct: 127 FEESDDLIKECERYNIALITLVSVTTPKERVKKLVKHA--KGFIY 169
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted
transferase, predicted O-methyltransferase, PFAM
PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Length = 260
Score = 26.0 bits (57), Expect = 4.3
Identities = 10/81 (12%), Positives = 27/81 (33%), Gaps = 5/81 (6%)
Query: 5 EIESSDINKKTNNR-FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKY 63
E+ +D+ + R +++F ++ + P +G R +
Sbjct: 93 EVLEADVTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFED- 151
Query: 64 SCKILNNLWKMLKPGGKLLFV 84
+ ++ GG+L +
Sbjct: 152 ---WIRTASAIMVSGGQLSLI 169
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 26.0 bits (57), Expect = 4.4
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 66 KILNNLWKMLKPGGKLLF 83
+ ++ + L+PGGK L
Sbjct: 171 GLYASVREHLEPGGKFLL 188
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold,
iron-sulfur PR biogenesis, apoptosis; NMR {Homo
sapiens} PDB: 2yui_A
Length = 176
Score = 25.6 bits (55), Expect = 5.2
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 61 SKYSCKILNNLWKMLKPGGKLLF 83
+ +S +IL + ++L+PGG L
Sbjct: 77 TLHSAEILAEIARILRPGGCLFL 99
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Exiguobacterium sibiricum 255-15}
Length = 243
Score = 25.9 bits (57), Expect = 5.3
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 66 KILNNLWKMLKPGGKLLF 83
+ ++ ++L GGKLLF
Sbjct: 118 QTFDSAARLLTDGGKLLF 135
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase;
NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Length = 243
Score = 25.9 bits (57), Expect = 5.4
Identities = 6/47 (12%), Positives = 16/47 (34%)
Query: 66 KILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS 112
++ + + L PGG +F T + + + ++
Sbjct: 125 RLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDR 171
>3dmg_A Probable ribosomal RNA small subunit methyltransf;
monomethyltranserase, 16S rRNA methyltransferase, N2
G1207 methyltransferase; HET: SAH; 1.55A {Thermus
thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Length = 381
Score = 26.1 bits (57), Expect = 5.4
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 66 KILNNLWKMLKPGGKLLFVT 85
+N L+PGG V+
Sbjct: 321 AFVNVAAARLRPGGVFFLVS 340
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics structure initiative, PSI; HET: SAM;
2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 25.7 bits (56), Expect = 5.6
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 66 KILNNLWKMLKPGGKLLFVT---CSLWFEESEE 95
+ L+ ++L GG + V FEE E+
Sbjct: 120 QALSKAMELLVTGGIITVVIYYGGDTGFEEKEK 152
>3cc8_A Putative methyltransferase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS transferase; 1.64A {Bacillus cereus}
Length = 230
Score = 25.5 bits (56), Expect = 6.2
Identities = 3/20 (15%), Positives = 8/20 (40%)
Query: 66 KILNNLWKMLKPGGKLLFVT 85
++ + +K G +L
Sbjct: 111 AVIEKVKPYIKQNGVILASI 130
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET:
PGE GOL; 2.00A {Clostridium acetobutylicum}
Length = 209
Score = 25.6 bits (56), Expect = 6.3
Identities = 6/43 (13%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 66 KILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSI 108
+ ++ + ++LKPGG + +E + + +
Sbjct: 109 EAIDEIKRVLKPGGLACINFLT-TKDERYNKGEKIGEGEFLQL 150
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A
{Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A*
3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Length = 266
Score = 25.5 bits (56), Expect = 6.4
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 66 KILNNLWKMLKPGGKLLFVT 85
K+ +K LKP G LL
Sbjct: 140 KLFQKCYKWLKPTGTLLITD 159
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural
genomics, protein structure initiative, pyrococc
furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Length = 230
Score = 25.6 bits (57), Expect = 6.8
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 66 KILNNLWKMLKPGGKLLF 83
K+L + L PGGK+
Sbjct: 160 KLLEEAFDHLNPGGKVAL 177
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA
(guanine1835-N2)-methyltransferase; HET: SAM; 2.30A
{Escherichia coli}
Length = 375
Score = 25.2 bits (55), Expect = 8.1
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 66 KILNNLWKMLKPGGKLLFVT 85
++ ++ + LK G+L V
Sbjct: 315 EMFHHARRCLKINGELYIVA 334
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 25.3 bits (55), Expect = 8.6
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 66 KILNNLWKMLKPGGKLLFVT 85
++ + ++LKP GK +
Sbjct: 123 QVFKEVRRVLKPSGKFIMYF 142
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI,
protein structure initiative; 1.90A {Vibrio cholerae}
Length = 361
Score = 25.3 bits (56), Expect = 8.9
Identities = 6/28 (21%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 4 GEIESSDI--NKKTNNRFRFYKNKYFDR 29
EI++ K + F +++DR
Sbjct: 165 SEIKAISFKLAKGDVSAFLAEDGRFYDR 192
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication,
RNA modification, SAM binding; 2.10A {Escherichia coli}
Length = 343
Score = 25.0 bits (55), Expect = 8.9
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 66 KILNNLWKMLKPGGKLLFV 84
++ + L GG+L V
Sbjct: 284 TLIRGAVRHLNSGGELRIV 302
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural
genomics, protein structure initiative, PSI; 2.50A
{Clostridium acetobutylicum} SCOP: c.66.1.43
Length = 246
Score = 25.1 bits (55), Expect = 9.4
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 66 KILNNLWKMLKPGGKLLF 83
K + LK GG +F
Sbjct: 123 KYFKAVSNHLKEGGVFIF 140
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding,
DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A
{Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Length = 263
Score = 25.2 bits (55), Expect = 9.6
Identities = 3/18 (16%), Positives = 6/18 (33%)
Query: 66 KILNNLWKMLKPGGKLLF 83
L + P G ++
Sbjct: 132 AALERFAAHVLPDGVVVV 149
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.424
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,170,279
Number of extensions: 116929
Number of successful extensions: 427
Number of sequences better than 10.0: 1
Number of HSP's gapped: 412
Number of HSP's successfully gapped: 97
Length of query: 139
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 55
Effective length of database: 4,356,429
Effective search space: 239603595
Effective search space used: 239603595
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.3 bits)