RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15213
(139 letters)
>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit
methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 284
Score = 76.3 bits (186), Expect = 4e-18
Identities = 45/121 (37%), Positives = 68/121 (56%), Gaps = 3/121 (2%)
Query: 19 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPG 78
++ + FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK G
Sbjct: 164 SQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTG 223
Query: 79 GKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVN---KKQDYDGFFYSLFQ 135
G L++ TCS+ EE+ Q F + D+ + P ++ DGFFY+
Sbjct: 224 GTLVYATCSVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGAEEGDGFFYAKLI 283
Query: 136 K 136
K
Sbjct: 284 K 284
>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 313
Score = 69.7 bits (169), Expect = 1e-15
Identities = 41/133 (30%), Positives = 58/133 (43%), Gaps = 23/133 (17%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
N FD+IL D PCTGSG + +NP+ W R +DIK ++L ++LKPGG L++
Sbjct: 183 NVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVY 242
Query: 84 VTCSLWFEESEEQAIIFSKNHKDSIRLNSPG--------------------QLLPTVNKK 123
TCSL EE+E N + G +L P
Sbjct: 243 STCSLEPEENEFVIQWALDNFDVELLPLKYGEPALTNPFGIELSEEIKNARRLYP---DV 299
Query: 124 QDYDGFFYSLFQK 136
+ GFF + +K
Sbjct: 300 HETSGFFIAKIRK 312
>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId:
9606]}
Length = 293
Score = 57.0 bits (136), Expect = 3e-11
Identities = 24/126 (19%), Positives = 45/126 (35%), Gaps = 16/126 (12%)
Query: 27 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKP-GGKLLFVT 85
IL D C+GSG+ R + P + ++ + + + P +L++ T
Sbjct: 167 VHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPSLQRLVYST 226
Query: 86 CSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNK---------------KQDYDGFF 130
CSL EE+E+ + + + RL P GFF
Sbjct: 227 CSLCQEENEDVVRDALQQNPGAFRLAPALPAWPHRGLSTFPGAEHCLRASPETTLSSGFF 286
Query: 131 YSLFQK 136
++ ++
Sbjct: 287 VAVIER 292
>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle
and C-terminal domains {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 324
Score = 46.4 bits (109), Expect = 2e-07
Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 13/77 (16%)
Query: 23 KNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLL 82
K + FD ++ D P + + D+K + + ++K GG L+
Sbjct: 214 KGEKFDIVVLDPPAFV-------------QHEKDLKAGLRAYFNVNFAGLNLVKDGGILV 260
Query: 83 FVTCSLWFEESEEQAII 99
+CS + + +I
Sbjct: 261 TCSCSQHVDLQMFKDMI 277
>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle
and C-terminal domains {Thermus thermophilus [TaxId:
274]}
Length = 318
Score = 45.2 bits (106), Expect = 4e-07
Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 13/76 (17%)
Query: 24 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 83
+ FD ++ D P G K D+++ + ++ K+LK GG L
Sbjct: 213 GERFDLVVLDPPAFAKG-------------KKDVERAYRAYKEVNLRAIKLLKEGGILAT 259
Query: 84 VTCSLWFEESEEQAII 99
+CS E A++
Sbjct: 260 ASCSHHMTEPLFYAMV 275
>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle
and C-terminal domains {Streptococcus mutans [TaxId:
1309]}
Length = 317
Score = 38.7 bits (89), Expect = 8e-05
Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 13/94 (13%)
Query: 23 KNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLL 82
+ +D I+ D P + R K ++ +SK K++ ++L G ++
Sbjct: 214 HHLTYDIIIIDPPS-------------FARNKKEVFSVSKDYHKLIRQGLEILSENGLII 260
Query: 83 FVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQL 116
T + S+ + I K QL
Sbjct: 261 ASTNAANMTVSQFKKQIEKGFGKQKHTYLDLQQL 294
>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB
{Salmonella typhimurium [TaxId: 90371]}
Length = 198
Score = 29.2 bits (64), Expect = 0.13
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 65 CKILNNLWKMLKPGGKLLFVT 85
++ N+ + KPGG L V
Sbjct: 114 PGLIANMQRCTKPGGYNLIVA 134
>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 251
Score = 28.2 bits (61), Expect = 0.33
Identities = 9/58 (15%), Positives = 25/58 (43%)
Query: 65 CKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNK 122
K+ + + + LKPGG + ++ + + + ++ + + ++ P V K
Sbjct: 125 RKLFSKVAEALKPGGVFITDFPCWFYGGRDGPVVWNEQKGEEKLVIMDWREVEPAVQK 182
>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase
domain {Thermus thermophilus [TaxId: 274]}
Length = 182
Score = 26.6 bits (58), Expect = 0.85
Identities = 16/108 (14%), Positives = 38/108 (35%), Gaps = 18/108 (16%)
Query: 12 NKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNL 71
+ + D ILADL + + + ++ + L
Sbjct: 71 FRHLKRHLAALGVERVDGILADLGVSSFHLDDPSDELN-------------ALKEFLEQA 117
Query: 72 WKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPT 119
++L PGG+L+ + S E ++ + +++ + L+P+
Sbjct: 118 AEVLAPGGRLVVIAF-----HSLEDRVVKRFLRESGLKVLTKKPLVPS 160
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus
cereus [TaxId: 1396]}
Length = 281
Score = 26.8 bits (58), Expect = 0.94
Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 66 KILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQD 125
+L + +K GGK++ W ++ + + I+L +L + ++
Sbjct: 112 TMLQKMIHSVKKGGKIICFE-PHWISNM-ASYLLDGEKQSEFIQLGVLQKLFESDTQRNG 169
Query: 126 YDGF 129
DG
Sbjct: 170 KDGN 173
>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 229
Score = 26.6 bits (57), Expect = 1.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 66 KILNNLWKMLKPGGKLLFVTCSLWFE 91
I N+ +++LKPGG L + + W E
Sbjct: 144 FIKNHAFRLLKPGGVLTYCNLTSWGE 169
>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas
syringae [TaxId: 317]}
Length = 201
Score = 26.6 bits (57), Expect = 1.1
Identities = 4/40 (10%), Positives = 10/40 (25%)
Query: 69 NNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSI 108
+L ++ L +T E + +
Sbjct: 122 QHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRV 161
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus
halodurans [TaxId: 86665]}
Length = 231
Score = 26.1 bits (56), Expect = 1.6
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 66 KILNNLWKMLKPGGKLLFVTCS 87
++ +++LK GG+LL V S
Sbjct: 99 SFVSEAYRVLKKGGQLLLVDNS 120
>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 309
Score = 26.3 bits (57), Expect = 1.6
Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 12/66 (18%)
Query: 22 YKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKL 81
+ +D IL D P G G ++ +L + +L+ ++L P
Sbjct: 200 RRGSTYDIILTDPPKFGRG------------THGEVWQLFDHLPLMLDICREILSPKALG 247
Query: 82 LFVTCS 87
L +T
Sbjct: 248 LVLTAY 253
>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 292
Score = 25.7 bits (55), Expect = 2.0
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 66 KILNNLWKMLKPGGKLLFVT 85
L N+ M++PGG L+
Sbjct: 155 LALKNIASMVRPGGLLVIDH 174
>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine
N-methyltransferase, PNMTase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 263
Score = 25.6 bits (55), Expect = 2.2
Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 15/86 (17%)
Query: 65 CKILNNLWKMLKPGGKLLFVTC--------------SLWFEESEEQAIIFSKNHKDSIRL 110
+ L+++ +L+PGG LL + + E E + ++ L
Sbjct: 178 QRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVRE-ALVRSGYKVRDL 236
Query: 111 NSPGQLLPTVNKKQDYDGFFYSLFQK 136
+ D G F++ QK
Sbjct: 237 RTYIMPAHLQTGVDDVKGVFFAWAQK 262
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis
[TaxId: 1423]}
Length = 234
Score = 25.3 bits (54), Expect = 2.7
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 66 KILNNLWKMLKPGGKLLFVTCSLW 89
K + + ++LK G+ L V
Sbjct: 100 KAVREVARVLKQDGRFLLVDHYAP 123
>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 25.3 bits (54), Expect = 2.8
Identities = 13/84 (15%), Positives = 23/84 (27%), Gaps = 3/84 (3%)
Query: 3 AGEIESSDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDI---PWLRRKNDIKK 59
A + +I+ ++ F + F I+++ P L
Sbjct: 152 AQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADS 211
Query: 60 LSKYSCKILNNLWKMLKPGGKLLF 83
I+ L GG LL
Sbjct: 212 GMADIVHIIEQSRNALVSGGFLLL 235
>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl
O-methyltransferase {Thermotoga maritima [TaxId: 2336]}
Length = 213
Score = 24.9 bits (53), Expect = 3.9
Identities = 7/42 (16%), Positives = 15/42 (35%), Gaps = 3/42 (7%)
Query: 67 ILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSI 108
+ + LK GG+++ + + S Q K +
Sbjct: 157 VPETWFTQLKEGGRVI---VPINLKLSRRQPAFLFKKKDPYL 195
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli
[TaxId: 562]}
Length = 245
Score = 24.5 bits (52), Expect = 6.0
Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Query: 66 KILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLP 118
L + LKPGG +L W + + I + + + L+
Sbjct: 118 GAEELLAQSLKPGGIMLIGEP-YWRQLPATEEIAQACGVSSTSDFLTLPGLVG 169
>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 223
Score = 24.4 bits (52), Expect = 6.3
Identities = 6/44 (13%), Positives = 14/44 (31%), Gaps = 3/44 (6%)
Query: 66 KILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIR 109
L L GG+L+ + + + + K+ +
Sbjct: 171 DTPTELINQLASGGRLI---VPVGPDGGSQYMQQYDKDANGKVE 211
>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus
thermophilus [TaxId: 274]}
Length = 233
Score = 24.2 bits (51), Expect = 6.7
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Query: 88 LWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKRKE 139
LWFEE E+ + R ++ P ++ F + L +K E
Sbjct: 2 LWFEEGAEERQV-----LGPFREFLKAEVAPGAAERDRTGAFPWDLVRKLAE 48
>d1md6a_ b.42.1.2 (A:) Interleukin-1F5 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 154
Score = 23.6 bits (51), Expect = 7.8
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 5 EIESSDINKKTNNRFRFYKNK 25
I + K + F FY+
Sbjct: 83 NIMELYLGAKESKSFTFYRRD 103
>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 226
Score = 23.9 bits (50), Expect = 8.0
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 66 KILNNLWKMLKPGGKLLFVT 85
++ + ++LKP GK +
Sbjct: 122 QVFKEVRRVLKPSGKFIMYF 141
>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371
{Clostridium acetobutylicum [TaxId: 1488]}
Length = 246
Score = 23.8 bits (50), Expect = 8.5
Identities = 8/44 (18%), Positives = 14/44 (31%)
Query: 66 KILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIR 109
K + LK GG +F S + F+ + +
Sbjct: 123 KYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFY 166
>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 215
Score = 24.0 bits (51), Expect = 8.5
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 66 KILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIR 109
KI L + LK GGKL+ Q ++ + KD I+
Sbjct: 157 KIPEPLIEQLKIGGKLIIP----VGSYHLWQELLEVRKTKDGIK 196
>d1ilr1_ b.42.1.2 (1:) Interleukin-1 receptor antagonist protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 145
Score = 23.6 bits (51), Expect = 9.4
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 5 EIESSDINKKTNNRFRFYKNK 25
I N+K + RF F ++
Sbjct: 77 NITDLSENRKQDKRFAFIRSD 97
>d2o4aa1 a.35.1.7 (A:370-452) DNA-binding protein SATB1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 22.8 bits (49), Expect = 9.8
Identities = 2/35 (5%), Positives = 10/35 (28%)
Query: 72 WKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 106
K + + + E + ++ ++
Sbjct: 46 PKTASQSLLVNLRAMQNFLQLPEAERDRIYQDERE 80
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.138 0.424
Gapped
Lambda K H
0.267 0.0655 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 557,250
Number of extensions: 25701
Number of successful extensions: 117
Number of sequences better than 10.0: 1
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 35
Length of query: 139
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 62
Effective length of database: 1,350,386
Effective search space: 83723932
Effective search space used: 83723932
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.4 bits)