BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15214
(265 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HXD|A Chain A, Crystal Structure Of E. Coli Biotin Repressor With Bound
Biotin
pdb|1HXD|B Chain B, Crystal Structure Of E. Coli Biotin Repressor With Bound
Biotin
pdb|2EWN|A Chain A, Ecoli Biotin Repressor With Co-repressor Analog
pdb|2EWN|B Chain B, Ecoli Biotin Repressor With Co-repressor Analog
pdb|1BIA|A Chain A, The E. Coli Biotin Holoenzyme Synthetase(Slash)bio
Repressor Crystal Structure Delineates The Biotin And
Dna- Binding Domains
pdb|1BIB|A Chain A, The E. Coli Biotin Holoenzyme Synthetase(Slash)bio
Repressor Crystal Structure Delineates The Biotin And
Dna- Binding Domains
Length = 321
Score = 110 bits (275), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 106/206 (51%), Gaps = 4/206 (1%)
Query: 61 QTAGRGRAGRIWYSEPEITLTFSLAWKFKISLKYLTSLPLVISIALSIALKKFG-QKVQL 119
Q AGRGR GR W+S L S+ W+ + L LVI I ++ L+K G KV++
Sbjct: 112 QQAGRGRRGRKWFSPFGANLYLSMFWRLEQGPAAAIGLSLVIGIVMAEVLRKLGADKVRV 171
Query: 120 KWPNDLLLNGNKFCGILIDTCIEKKNNNWAIIGIGLNLGLPRILSKKINIGNIS---ELL 176
KWPNDL L K GIL++ + + +IG G+N+ + R+ +N G I+ +
Sbjct: 172 KWPNDLYLQDRKLAGILVELTGKTGDAAQIVIGAGINMAMRRVEESVVNQGWITLQEAGI 231
Query: 177 NMEHEKLLAVFICYLIDSLKLFEHYGFSIFMKYWNFNHAYTNKTVDILKLNKIQKGIVIG 236
N++ L A+ I L +L+LFE G + ++ W + N+ V ++ +K GI G
Sbjct: 232 NLDRNTLAAMLIRELRAALELFEQEGLAPYLSRWEKLDNFINRPVKLIIGDKEIFGISRG 291
Query: 237 INKNGCLLLNTKFGKITISSGDVSLR 262
I+K G LLL G++SLR
Sbjct: 292 IDKQGALLLEQDGIIKPWMGGEISLR 317
>pdb|3RIR|A Chain A, Crystal Strucrture Of Biotin Protein Ligase From S. Aureus
pdb|3RKW|A Chain A, Structural Characterisation Of Staphylococcus Aureus
Biotin Protein Ligase
pdb|3RKX|A Chain A, Structural Characterisation Of Staphylococcus Aureus
Biotin Protein Ligase
pdb|3RKY|A Chain A, Structural Characterisation Of Staphylococcus Aureus
Biotin Protein Ligase
Length = 323
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 90/203 (44%), Gaps = 6/203 (2%)
Query: 55 FLATKIQTAGRGRAGRIWYSEPEITLTFSLAWKFKISLKYLTSLPLVISIALSIALKKFG 114
F+ + QT GRGR R W S L S+ + ++ ++ L I++ + A++ F
Sbjct: 110 FILSDEQTKGRGRFNRHWSSSKGQGLWMSVVLRPNVAFSMISKFNLFIALGIRDAIQHFS 169
Query: 115 Q-KVQLKWPNDLLLNGNKFCGILIDTCIEKKNNNWAIIGIGLNL-----GLPRILSKKIN 168
Q +V++KWPND+ ++ K CG L + I GIG+NL + +
Sbjct: 170 QDEVKVKWPNDIYIDNGKVCGFLTEMVANNDGIEAIICGIGINLTQQLENFDESIRHRAT 229
Query: 169 IGNISELLNMEHEKLLAVFICYLIDSLKLFEHYGFSIFMKYWNFNHAYTNKTVDILKLNK 228
+ + ++ + L + + F FS + +N N+T+ + +K
Sbjct: 230 SIQLHDKNKLDRYQFLERLLQEIEKRYNQFLTLPFSEIREEYNAASNIWNRTLLFTENDK 289
Query: 229 IQKGIVIGINKNGCLLLNTKFGK 251
KG I ++ +G L++ + G+
Sbjct: 290 QFKGQAIDLDYDGYLIVRDEAGE 312
>pdb|3V7R|A Chain A, Crystal Structure Of Staphylococcus Aureus Biotin Protein
Ligase In Complex With Inhibitor
pdb|3V8J|A Chain A, Crystal Structure Of Staphylococcus Aureus Biotin Protein
Ligase
pdb|3V8K|A Chain A, Crystal Structure Of Staphylococcus Aureus Biotin Protein
Ligase In Complex With Biotin
pdb|3V8L|A Chain A, Crystal Structure Of Staphylococcus Aureus Biotin Protein
Ligase In Complex With Biotinyl-5'-Amp
Length = 329
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Query: 55 FLATKIQTAGRGRAGRIWYSEPEITLTFSLAWKFKISLKYLTSLPLVISIALSIALKKFG 114
F+ + QT GRGR R W S L S+ + ++ ++ L I++ + A++ F
Sbjct: 116 FILSDEQTKGRGRFNRHWSSSKGQGLWMSVVLRPNVAFSMISKFNLFIALGIRDAIQHFS 175
Query: 115 Q-KVQLKWPNDLLLNGNKFCGILIDTCIEKKNNNWAIIGIGLNL 157
Q +V++KWPND+ ++ K CG L + I GIG+NL
Sbjct: 176 QDEVKVKWPNDIYIDNGKVCGFLTEMVANNDGIEAIICGIGINL 219
>pdb|3V7C|A Chain A, Cystal Structure Of Sabpl In Complex With Inhibitor
pdb|3V7S|A Chain A, Crystal Structure Of Staphylococcus Aureus Biotin Protein
Ligase In Complex With Inhibitor 0364
Length = 329
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Query: 55 FLATKIQTAGRGRAGRIWYSEPEITLTFSLAWKFKISLKYLTSLPLVISIALSIALKKFG 114
F+ + QT GRGR R W S L S+ + ++ ++ L I++ + A++ F
Sbjct: 110 FILSDEQTKGRGRFNRHWSSSKGQGLWMSVVLRPNVAFSMISKFNLFIALGIRDAIQHFS 169
Query: 115 Q-KVQLKWPNDLLLNGNKFCGILIDTCIEKKNNNWAIIGIGLNL 157
Q +V++KWPND+ ++ K CG L + I GIG+NL
Sbjct: 170 QDEVKVKWPNDIYIDNGKVCGFLTEMVANNDGIEAIICGIGINL 213
>pdb|4DQ2|A Chain A, Structure Of Staphylococcus Aureus Biotin Protein Ligase
In Complex With Biotinol-5'-Amp
Length = 328
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Query: 55 FLATKIQTAGRGRAGRIWYSEPEITLTFSLAWKFKISLKYLTSLPLVISIALSIALKKFG 114
F+ + QT GRGR R W S L S+ + ++ ++ L I++ + A++ F
Sbjct: 109 FILSDEQTKGRGRFNRHWSSSKGQGLWMSVVLRPNVAFSMISKFNLFIALGIRDAIQHFS 168
Query: 115 Q-KVQLKWPNDLLLNGNKFCGILIDTCIEKKNNNWAIIGIGLNL 157
Q +V++KWPND+ ++ K CG L + I GIG+NL
Sbjct: 169 QDEVKVKWPNDIYIDNGKVCGFLTEMVANNDGIEAIICGIGINL 212
>pdb|1WNL|A Chain A, Crystal Structure Of Biotin-(Acetyl-Coa-Carboxylase)
Ligase From Pyrococcus Horikoshii Ot3 In Complex With
Adp
pdb|1WNL|B Chain B, Crystal Structure Of Biotin-(Acetyl-Coa-Carboxylase)
Ligase From Pyrococcus Horikoshii Ot3 In Complex With
Adp
pdb|1WQ7|A Chain A, Crystal Structure Of Biotin-(acetyl-coa-carboxylase)
Ligase From Pyrococcus Horikoshii Ot3
pdb|1WQ7|B Chain B, Crystal Structure Of Biotin-(acetyl-coa-carboxylase)
Ligase From Pyrococcus Horikoshii Ot3
pdb|1WQW|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Biotinyl-5-Amp
pdb|1WQW|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Biotinyl-5-Amp
pdb|1X01|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Atp
pdb|1X01|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Atp
pdb|2DKG|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Biotinyl-5'-Amp,
Pyrophosphate And Mg(2+)
pdb|2DKG|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Biotinyl-5'-Amp,
Pyrophosphate And Mg(2+)
pdb|2DTH|A Chain A, The Crystal Structure Of The Orthorhombic Form Of Biotin
Protein Ligase From Pyrococcus Horikoshii Ot3 In Complex
With Biotin And Adp
pdb|2DTH|B Chain B, The Crystal Structure Of The Orthorhombic Form Of Biotin
Protein Ligase From Pyrococcus Horikoshii Ot3 In Complex
With Biotin And Adp
pdb|2DTI|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Biotinyl-5'-amp,
Pyrophosphate And Mn(2+)
pdb|2DTI|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Biotinyl-5'-amp,
Pyrophosphate And Mn(2+)
Length = 235
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 102/217 (47%), Gaps = 18/217 (8%)
Query: 50 LFHPTFLATKIQTAGRGRAGRIWYSEPEITLTFSLAWKFKISLKYLTSLPLVISIALSIA 109
L T + QT G GR R W S PE L S+ K+ K L + + ++ +
Sbjct: 31 LEEGTVIVADKQTMGHGRLNRKWES-PEGGLWLSIVLSPKVPQKDLPKIVFLGAVGVVET 89
Query: 110 LKKFGQKVQLKWPNDLLLNGNKFCGILIDTCIEKKNNNWAIIGIGLNLGLPRILSKKINI 169
LK+F ++KWPND+L+N K G+L++ +K ++GIGLN ++ K+
Sbjct: 90 LKEFSIDGRIKWPNDVLVNYKKIAGVLVEGKGDK-----IVLGIGLN------VNNKVPN 138
Query: 170 GNISELLNMEHE-KLLAVFICYLIDSLKLFEHYGFSIFMKYWNF--NHAYTNKTVDILKL 226
G S L + E LL+VF + + +L+ ++ M N ++ V IL
Sbjct: 139 GATSMKLELGSEVPLLSVFRSLITNLDRLYLNF-LKNPMDILNLVRDNMILGVRVKILGD 197
Query: 227 NKIQKGIVIGINKNGCLLLNTKFGKI-TISSGDVSLR 262
+ GI I+ G L++ G++ + GDVSLR
Sbjct: 198 GSFE-GIAEDIDDFGRLIIRLDSGEVKKVIYGDVSLR 233
>pdb|1WPY|A Chain A, Crystal Structure Of Biotin-(Acetyl-Coa-Carboxylase)
Ligase From Pyrococcus Horikoshii Ot3 In Complex With
Biotin
pdb|1WPY|B Chain B, Crystal Structure Of Biotin-(Acetyl-Coa-Carboxylase)
Ligase From Pyrococcus Horikoshii Ot3 In Complex With
Biotin
pdb|2FYK|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Adp And Biotin
pdb|2FYK|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Adp And Biotin
pdb|2DTO|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 Complexed With Atp And Biotin
pdb|2DTO|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 Complexed With Atp And Biotin
Length = 235
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 13/153 (8%)
Query: 50 LFHPTFLATKIQTAGRGRAGRIWYSEPEITLTFSLAWKFKISLKYLTSLPLVISIALSIA 109
L T + QT G GR R W S PE L S+ K+ K L + + ++ +
Sbjct: 31 LEEGTVIVADKQTXGHGRLNRKWES-PEGGLWLSIVLSPKVPQKDLPKIVFLGAVGVVET 89
Query: 110 LKKFGQKVQLKWPNDLLLNGNKFCGILIDTCIEKKNNNWAIIGIGLNLGLPRILSKKINI 169
LK+F ++KWPND+L+N K G+L++ +K ++GIGLN ++ K+
Sbjct: 90 LKEFSIDGRIKWPNDVLVNYKKIAGVLVEGKGDK-----IVLGIGLN------VNNKVPN 138
Query: 170 GNISELLNMEHE-KLLAVFICYLIDSLKLFEHY 201
G S L + E LL+VF + + +L+ ++
Sbjct: 139 GATSXKLELGSEVPLLSVFRSLITNLDRLYLNF 171
>pdb|2DJZ|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Biotinyl-5'-amp, K111a
Mutation
pdb|2DJZ|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Biotinyl-5'-amp, K111a
Mutation
pdb|2HNI|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3, K111a Mutation
pdb|2HNI|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3, K111a Mutation
Length = 235
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 101/217 (46%), Gaps = 18/217 (8%)
Query: 50 LFHPTFLATKIQTAGRGRAGRIWYSEPEITLTFSLAWKFKISLKYLTSLPLVISIALSIA 109
L T + QT G GR R W S PE L S+ K+ K L + + ++ +
Sbjct: 31 LEEGTVIVADKQTMGHGRLNRKWES-PEGGLWLSIVLSPKVPQKDLPKIVFLGAVGVVET 89
Query: 110 LKKFGQKVQLKWPNDLLLNGNKFCGILIDTCIEKKNNNWAIIGIGLNLGLPRILSKKINI 169
LK+F ++KWPND+L+N G+L++ +K ++GIGLN ++ K+
Sbjct: 90 LKEFSIDGRIKWPNDVLVNYKAIAGVLVEGKGDK-----IVLGIGLN------VNNKVPN 138
Query: 170 GNISELLNMEHE-KLLAVFICYLIDSLKLFEHYGFSIFMKYWNF--NHAYTNKTVDILKL 226
G S L + E LL+VF + + +L+ ++ M N ++ V IL
Sbjct: 139 GATSMKLELGSEVPLLSVFRSLITNLDRLYLNF-LKNPMDILNLVRDNMILGVRVKILGD 197
Query: 227 NKIQKGIVIGINKNGCLLLNTKFGKI-TISSGDVSLR 262
+ GI I+ G L++ G++ + GDVSLR
Sbjct: 198 GSFE-GIAEDIDDFGRLIIRLDSGEVKKVIYGDVSLR 233
>pdb|2DEQ|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Biotinyl-5'-Amp, K111g
Mutation
pdb|2DEQ|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Biotinyl-5'-Amp, K111g
Mutation
pdb|2E1H|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3, K111g Mutation
pdb|2E1H|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3, K111g Mutation
Length = 235
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 101/217 (46%), Gaps = 18/217 (8%)
Query: 50 LFHPTFLATKIQTAGRGRAGRIWYSEPEITLTFSLAWKFKISLKYLTSLPLVISIALSIA 109
L T + QT G GR R W S PE L S+ K+ K L + + ++ +
Sbjct: 31 LEEGTVIVADKQTMGHGRLNRKWES-PEGGLWLSIVLSPKVPQKDLPKIVFLGAVGVVET 89
Query: 110 LKKFGQKVQLKWPNDLLLNGNKFCGILIDTCIEKKNNNWAIIGIGLNLGLPRILSKKINI 169
LK+F ++KWPND+L+N G+L++ +K ++GIGLN ++ K+
Sbjct: 90 LKEFSIDGRIKWPNDVLVNYKGIAGVLVEGKGDK-----IVLGIGLN------VNNKVPN 138
Query: 170 GNISELLNMEHE-KLLAVFICYLIDSLKLFEHYGFSIFMKYWNF--NHAYTNKTVDILKL 226
G S L + E LL+VF + + +L+ ++ M N ++ V IL
Sbjct: 139 GATSMKLELGSEVPLLSVFRSLITNLDRLYLNF-LKNPMDILNLVRDNMILGVRVKILGD 197
Query: 227 NKIQKGIVIGINKNGCLLLNTKFGKI-TISSGDVSLR 262
+ GI I+ G L++ G++ + GDVSLR
Sbjct: 198 GSFE-GIAEDIDDFGRLIIRLDSGEVKKVIYGDVSLR 233
>pdb|2DXU|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Complexed With Biotinyl-5'-Amp, Mutation R48a
pdb|2DXU|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Complexed With Biotinyl-5'-Amp, Mutation R48a
pdb|2DZC|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii, Mutation R48a
pdb|2DZC|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii, Mutation R48a
pdb|2EJG|A Chain A, Crystal Structure Of The Biotin Protein Ligase (Mutation
R48a) And Biotin Carboxyl Carrier Protein Complex From
Pyrococcus Horikoshii Ot3
pdb|2EJG|B Chain B, Crystal Structure Of The Biotin Protein Ligase (Mutation
R48a) And Biotin Carboxyl Carrier Protein Complex From
Pyrococcus Horikoshii Ot3
Length = 235
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 101/217 (46%), Gaps = 18/217 (8%)
Query: 50 LFHPTFLATKIQTAGRGRAGRIWYSEPEITLTFSLAWKFKISLKYLTSLPLVISIALSIA 109
L T + QT G G R W S PE L S+ K+ K L + + ++ +
Sbjct: 31 LEEGTVIVADKQTMGHGALNRKWES-PEGGLWLSIVLSPKVPQKDLPKIVFLGAVGVVET 89
Query: 110 LKKFGQKVQLKWPNDLLLNGNKFCGILIDTCIEKKNNNWAIIGIGLNLGLPRILSKKINI 169
LK+F ++KWPND+L+N K G+L++ +K ++GIGLN ++ K+
Sbjct: 90 LKEFSIDGRIKWPNDVLVNYKKIAGVLVEGKGDK-----IVLGIGLN------VNNKVPN 138
Query: 170 GNISELLNMEHE-KLLAVFICYLIDSLKLFEHYGFSIFMKYWNF--NHAYTNKTVDILKL 226
G S L + E LL+VF + + +L+ ++ M N ++ V IL
Sbjct: 139 GATSMKLELGSEVPLLSVFRSLITNLDRLYLNF-LKNPMDILNLVRDNMILGVRVKILGD 197
Query: 227 NKIQKGIVIGINKNGCLLLNTKFGKI-TISSGDVSLR 262
+ GI I+ G L++ G++ + GDVSLR
Sbjct: 198 GSFE-GIAEDIDDFGRLIIRLDSGEVKKVIYGDVSLR 233
>pdb|2DVE|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Biotinyl-5'-Amp, Mutation
Arg51ala
pdb|2DVE|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Biotinyl-5'-Amp, Mutation
Arg51ala
pdb|2E10|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii, Mutation R51a
pdb|2E10|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii, Mutation R51a
Length = 235
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 101/217 (46%), Gaps = 18/217 (8%)
Query: 50 LFHPTFLATKIQTAGRGRAGRIWYSEPEITLTFSLAWKFKISLKYLTSLPLVISIALSIA 109
L T + QT G GR W S PE L S+ K+ K L + + ++ +
Sbjct: 31 LEEGTVIVADKQTMGHGRLNAKWES-PEGGLWLSIVLSPKVPQKDLPKIVFLGAVGVVET 89
Query: 110 LKKFGQKVQLKWPNDLLLNGNKFCGILIDTCIEKKNNNWAIIGIGLNLGLPRILSKKINI 169
LK+F ++KWPND+L+N K G+L++ +K ++GIGLN ++ K+
Sbjct: 90 LKEFSIDGRIKWPNDVLVNYKKIAGVLVEGKGDK-----IVLGIGLN------VNNKVPN 138
Query: 170 GNISELLNMEHE-KLLAVFICYLIDSLKLFEHYGFSIFMKYWNF--NHAYTNKTVDILKL 226
G S L + E LL+VF + + +L+ ++ M N ++ V IL
Sbjct: 139 GATSMKLELGSEVPLLSVFRSLITNLDRLYLNF-LKNPMDILNLVRDNMILGVRVKILGD 197
Query: 227 NKIQKGIVIGINKNGCLLLNTKFGKI-TISSGDVSLR 262
+ GI I+ G L++ G++ + GDVSLR
Sbjct: 198 GSFE-GIAEDIDDFGRLIIRLDSGEVKKVIYGDVSLR 233
>pdb|2DXT|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Complexed With Atp And Biotin, Mutation D104a
pdb|2DXT|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Complexed With Atp And Biotin, Mutation D104a
pdb|2DZ9|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Complexed With Biotinyl-5'-Amp, Mutation
D104a
pdb|2DZ9|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Complexed With Biotinyl-5'-Amp, Mutation
D104a
pdb|2E65|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3, Mutation D104a
pdb|2E65|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3, Mutation D104a
Length = 235
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 101/217 (46%), Gaps = 18/217 (8%)
Query: 50 LFHPTFLATKIQTAGRGRAGRIWYSEPEITLTFSLAWKFKISLKYLTSLPLVISIALSIA 109
L T + QT G GR R W S PE L S+ K+ K L + + ++ +
Sbjct: 31 LEEGTVIVADKQTMGHGRLNRKWES-PEGGLWLSIVLSPKVPQKDLPKIVFLGAVGVVET 89
Query: 110 LKKFGQKVQLKWPNDLLLNGNKFCGILIDTCIEKKNNNWAIIGIGLNLGLPRILSKKINI 169
LK+F ++KWPN +L+N K G+L++ +K ++GIGLN ++ K+
Sbjct: 90 LKEFSIDGRIKWPNAVLVNYKKIAGVLVEGKGDK-----IVLGIGLN------VNNKVPN 138
Query: 170 GNISELLNMEHE-KLLAVFICYLIDSLKLFEHYGFSIFMKYWNF--NHAYTNKTVDILKL 226
G S L + E LL+VF + + +L+ ++ M N ++ V IL
Sbjct: 139 GATSMKLELGSEVPLLSVFRSLITNLDRLYLNF-LKNPMDILNLVRDNMILGVRVKILGD 197
Query: 227 NKIQKGIVIGINKNGCLLLNTKFGKI-TISSGDVSLR 262
+ GI I+ G L++ G++ + GDVSLR
Sbjct: 198 GSFE-GIAEDIDDFGRLIIRLDSGEVKKVIYGDVSLR 233
>pdb|2E41|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Complexed With The Reaction Product Analog
Biotinol-5'-Amp, Mutations R48a And K111a
pdb|2E41|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Complexed With The Reaction Product Analog
Biotinol-5'-Amp, Mutations R48a And K111a
pdb|2E64|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii, Mutations R48a And K111a
pdb|2E64|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii, Mutations R48a And K111a
pdb|2ZGW|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Complexed With Adenosine And Biotin,
Mutations R48a And K111a
pdb|2ZGW|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Complexed With Adenosine And Biotin,
Mutations R48a And K111a
pdb|2EJF|A Chain A, Crystal Structure Of The Biotin Protein Ligase (Mutations
R48a And K111a) And Biotin Carboxyl Carrier Protein
Complex From Pyrococcus Horikoshii Ot3
pdb|2EJF|B Chain B, Crystal Structure Of The Biotin Protein Ligase (Mutations
R48a And K111a) And Biotin Carboxyl Carrier Protein
Complex From Pyrococcus Horikoshii Ot3
Length = 235
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 100/217 (46%), Gaps = 18/217 (8%)
Query: 50 LFHPTFLATKIQTAGRGRAGRIWYSEPEITLTFSLAWKFKISLKYLTSLPLVISIALSIA 109
L T + QT G G R W S PE L S+ K+ K L + + ++ +
Sbjct: 31 LEEGTVIVADKQTMGHGALNRKWES-PEGGLWLSIVLSPKVPQKDLPKIVFLGAVGVVET 89
Query: 110 LKKFGQKVQLKWPNDLLLNGNKFCGILIDTCIEKKNNNWAIIGIGLNLGLPRILSKKINI 169
LK+F ++KWPND+L+N G+L++ +K ++GIGLN ++ K+
Sbjct: 90 LKEFSIDGRIKWPNDVLVNYKAIAGVLVEGKGDK-----IVLGIGLN------VNNKVPN 138
Query: 170 GNISELLNMEHE-KLLAVFICYLIDSLKLFEHYGFSIFMKYWNF--NHAYTNKTVDILKL 226
G S L + E LL+VF + + +L+ ++ M N ++ V IL
Sbjct: 139 GATSMKLELGSEVPLLSVFRSLITNLDRLYLNF-LKNPMDILNLVRDNMILGVRVKILGD 197
Query: 227 NKIQKGIVIGINKNGCLLLNTKFGKI-TISSGDVSLR 262
+ GI I+ G L++ G++ + GDVSLR
Sbjct: 198 GSFE-GIAEDIDDFGRLIIRLDSGEVKKVIYGDVSLR 233
>pdb|3L1A|A Chain A, Structural Ordering Of Disordered Ligand Binding Loops Of
Biotin Protein Ligase Into Active Conformations As A
Consequence Of Dehydration
pdb|3L1A|B Chain B, Structural Ordering Of Disordered Ligand Binding Loops Of
Biotin Protein Ligase Into Active Conformations As A
Consequence Of Dehydration
pdb|3L2Z|A Chain A, Crystal Structure Of Hydrated Biotin Protein Ligase From
M. Tuberculosis
pdb|3L2Z|B Chain B, Crystal Structure Of Hydrated Biotin Protein Ligase From
M. Tuberculosis
Length = 266
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 88/214 (41%), Gaps = 29/214 (13%)
Query: 61 QTAGRGRAGRIWYSEPEITLTFSL----------AWKFKISLKYLTSLPLVISIALSIAL 110
QTAGRGR GR W + + S+ AW + L L ++ S+A IA+
Sbjct: 63 QTAGRGRHGRGWAATARAQIILSVGVRVVDVPVQAWGW---LSLAAGLAVLDSVAPLIAV 119
Query: 111 KKFGQKVQLKWPNDLLLNGNKFCGILIDTCIEKKNNNWAIIGIGLNL-GLPRILSKK--- 166
+ LKWPND+L G K GIL + + ++G+GLN+ P +
Sbjct: 120 PPA--ETGLKWPNDVLARGGKLAGILAEVA-----QPFVVLGVGLNVTQAPEEVDPDATS 172
Query: 167 -INIGNISELLNMEHEKLLAVFICYLIDSLKLFEHYGFSIFMKYWNFNHAYTNKTVDILK 225
+++G + N +LL +I + + + Y + ++ L
Sbjct: 173 LLDLGVAAPDRNRIASRLLRELEARIIQ----WRNANPQLAADYRARSLTIGSRVRVELP 228
Query: 226 LNKIQKGIVIGINKNGCLLLNTKFGKITISSGDV 259
+ GI I+ G L L+ + +S+GDV
Sbjct: 229 GGQDVVGIARDIDDQGRLCLDVGGRTVVVSAGDV 262
>pdb|3RUX|A Chain A, Crystal Structure Of Biotin-Protein Ligase Bira From
Mycobacterium Tuberculosis In Complex With An
Acylsulfamide Bisubstrate Inhibitor
pdb|3RUX|B Chain B, Crystal Structure Of Biotin-Protein Ligase Bira From
Mycobacterium Tuberculosis In Complex With An
Acylsulfamide Bisubstrate Inhibitor
Length = 270
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 88/214 (41%), Gaps = 29/214 (13%)
Query: 61 QTAGRGRAGRIWYSEPEITLTFSL----------AWKFKISLKYLTSLPLVISIALSIAL 110
QTAGRGR GR W + + S+ AW + L L ++ S+A IA+
Sbjct: 67 QTAGRGRHGRGWAATARAQIILSVGVRVVDVPVQAWGW---LSLAAGLAVLDSVAPLIAV 123
Query: 111 KKFGQKVQLKWPNDLLLNGNKFCGILIDTCIEKKNNNWAIIGIGLNL-GLPRILSKK--- 166
+ LKWPND+L G K GIL + + ++G+GLN+ P +
Sbjct: 124 PPA--ETGLKWPNDVLARGGKLAGILAEVA-----QPFVVLGVGLNVTQAPEEVDPDATS 176
Query: 167 -INIGNISELLNMEHEKLLAVFICYLIDSLKLFEHYGFSIFMKYWNFNHAYTNKTVDILK 225
+++G + N +LL +I + + + Y + ++ L
Sbjct: 177 LLDLGVAAPDRNRIASRLLRELEARIIQ----WRNANPQLAADYRARSLTIGSRVRVELP 232
Query: 226 LNKIQKGIVIGINKNGCLLLNTKFGKITISSGDV 259
+ GI I+ G L L+ + +S+GDV
Sbjct: 233 GGQDVVGIARDIDDQGRLCLDVGGRTVVVSAGDV 266
>pdb|2CGH|A Chain A, Crystal Structure Of Biotin Ligase From Mycobacterium
Tuberculosis
pdb|2CGH|B Chain B, Crystal Structure Of Biotin Ligase From Mycobacterium
Tuberculosis
Length = 268
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 88/214 (41%), Gaps = 29/214 (13%)
Query: 61 QTAGRGRAGRIWYSEPEITLTFSL----------AWKFKISLKYLTSLPLVISIALSIAL 110
QTAGRGR GR W + + S+ AW + L L ++ S+A IA+
Sbjct: 65 QTAGRGRHGRGWAATARAQIILSVGVRVVDVPVQAWGW---LSLAAGLAVLDSVAPLIAV 121
Query: 111 KKFGQKVQLKWPNDLLLNGNKFCGILIDTCIEKKNNNWAIIGIGLNL-GLPRILSKK--- 166
+ LKWPND+L G K GIL + + ++G+GLN+ P +
Sbjct: 122 PPA--ETGLKWPNDVLARGGKLAGILAEVA-----QPFVVLGVGLNVTQAPEEVDPDATS 174
Query: 167 -INIGNISELLNMEHEKLLAVFICYLIDSLKLFEHYGFSIFMKYWNFNHAYTNKTVDILK 225
+++G + N +LL +I + + + Y + ++ L
Sbjct: 175 LLDLGVAAPDRNRIASRLLRELEARIIQ----WRNANPQLAADYRARSLTIGSRVRVELP 230
Query: 226 LNKIQKGIVIGINKNGCLLLNTKFGKITISSGDV 259
+ GI I+ G L L+ + +S+GDV
Sbjct: 231 GGQDVVGIARDIDDQGRLCLDVGGRTVVVSAGDV 264
>pdb|2EJ9|A Chain A, Crystal Structure Of Biotin Protein Ligase From
Methanococcus Jannaschii
Length = 237
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 108/214 (50%), Gaps = 24/214 (11%)
Query: 56 LATKIQTAGRGRAGRIWYSEPEITLTFSLAWKFKISLKYLTSLPLVISIALSIALKKF-G 114
LA K Q G+GR GR+WYS+ E L FS+ K L + L++ I + LK +
Sbjct: 30 LADK-QNNGKGRWGRVWYSD-EGGLYFSMVLDSK--LYNPKVINLLVPICIIEVLKNYVD 85
Query: 115 QKVQLKWPNDLLLNGN----KFCGILIDTCIEKKNNNWAIIGIGLNLGLP-RILSKKINI 169
+++ LK+PND+++ N K GIL + +++ IIGIG+N+ R ++I I
Sbjct: 86 KELGLKFPNDIMVKVNDNYKKLGGILTELT-----DDYMIIGIGINVNNQIRNEIREIAI 140
Query: 170 GNISELLNMEHEKL------LAVFICYLIDSLKLFEHYGFSIFMKYWNFNHAYTNKTVDI 223
++ E+ E +K+ L F YL + LK E + I KY ++ + +
Sbjct: 141 -SLKEITGKELDKVEILSNFLKTFESYL-EKLKNKEIDDYEILKKYKKYSITIGKQVKIL 198
Query: 224 LKLNKIQKGIVIGINKNGCLLLNTKFGKITISSG 257
L N+I G V I+ +G ++L T+ G I SG
Sbjct: 199 LSNNEIITGKVYDIDFDG-IVLGTEKGIERIPSG 231
>pdb|2EAY|A Chain A, Crystal Structure Of Biotin Protein Ligase From Aquifex
Aeolicus
pdb|2EAY|B Chain B, Crystal Structure Of Biotin Protein Ligase From Aquifex
Aeolicus
Length = 233
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 106/215 (49%), Gaps = 12/215 (5%)
Query: 52 HPTFLATKIQTAGRGRAGRIWYSEPEITLTFSLAWKFKISLKYLTSLPLVISIALSIALK 111
+ T L QT GRGR GR W S+ E L FS K + L LPLV+ +++S AL+
Sbjct: 25 YGTALVADRQTKGRGRLGRKWLSQ-EGGLYFSFLLNPK-EFENLLQLPLVLGLSVSEALE 82
Query: 112 KFGQ-KVQLKWPNDLLLNGNKFCGILIDTCIEKKNNNWAIIGIGLNLGLPRILSK-KINI 169
+ + LKWPND+ K G+L + +K I+GIG+N+ I + K
Sbjct: 83 EITEIPFSLKWPNDVYFQEKKVSGVLCELSKDK-----LIVGIGINVNQREIPEEIKDRA 137
Query: 170 GNISELL--NMEHEKLLAVFICYLIDSLKLFEHYGFSIFMKYWNFNHAYTNKTVDILKLN 227
+ E+ + + +++L + + ++LK F+ F F Y + V +L
Sbjct: 138 TTLYEITGKDWDRKEVLLKVLKRISENLKKFKEKSFKEFKGKIESKXLYLGEEVKLLGEG 197
Query: 228 KIQKGIVIGINKNGCLLLNTKFGKITISSGDVSLR 262
KI G ++G+++ G L+ T+ G I SG+ SLR
Sbjct: 198 KIT-GKLVGLSEKGGALILTEEGIKEILSGEFSLR 231
>pdb|3EFS|A Chain A, Biotin Protein Ligase From Aquifex Aeolicus In Complex
With Biotin And Atp
pdb|3EFS|B Chain B, Biotin Protein Ligase From Aquifex Aeolicus In Complex
With Biotin And Atp
pdb|3FJP|A Chain A, Apo Structure Of Biotin Protein Ligase From Aquifex
Aeolicus
pdb|3FJP|B Chain B, Apo Structure Of Biotin Protein Ligase From Aquifex
Aeolicus
Length = 233
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 106/215 (49%), Gaps = 12/215 (5%)
Query: 52 HPTFLATKIQTAGRGRAGRIWYSEPEITLTFSLAWKFKISLKYLTSLPLVISIALSIALK 111
+ T L QT GRGR GR W S+ E L FS K + L LPLV+ +++S AL+
Sbjct: 25 YGTALVADRQTKGRGRLGRKWLSQ-EGGLYFSFLLNPK-EFENLLQLPLVLGLSVSEALE 82
Query: 112 KFGQ-KVQLKWPNDLLLNGNKFCGILIDTCIEKKNNNWAIIGIGLNLGLPRILSK-KINI 169
+ + LKWPND+ K G+L + +K I+GIG+N+ I + K
Sbjct: 83 EITEIPFSLKWPNDVYFQEKKVSGVLRELSKDK-----LIVGIGINVNQREIPEEIKDRA 137
Query: 170 GNISELL--NMEHEKLLAVFICYLIDSLKLFEHYGFSIFMKYWNFNHAYTNKTVDILKLN 227
+ E+ + + +++L + + ++LK F+ F F Y + V +L
Sbjct: 138 TTLYEITGKDWDRKEVLLKVLKRISENLKKFKEKSFKEFKGKIESKMLYLGEEVKLLGEG 197
Query: 228 KIQKGIVIGINKNGCLLLNTKFGKITISSGDVSLR 262
KI G ++G+++ G L+ T+ G I SG+ SLR
Sbjct: 198 KIT-GKLVGLSEKGGALILTEEGIKEILSGEFSLR 231
>pdb|3EFR|A Chain A, Biotin Protein Ligase R40g Mutant From Aquifex Aeolicus In
Complex With Biotin
pdb|3EFR|B Chain B, Biotin Protein Ligase R40g Mutant From Aquifex Aeolicus In
Complex With Biotin
Length = 233
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 105/215 (48%), Gaps = 12/215 (5%)
Query: 52 HPTFLATKIQTAGRGRAGRIWYSEPEITLTFSLAWKFKISLKYLTSLPLVISIALSIALK 111
+ T L QT GRG GR W S+ E L FS K + L LPLV+ +++S AL+
Sbjct: 25 YGTALVADRQTKGRGGLGRKWLSQ-EGGLYFSFLLNPK-EFENLLQLPLVLGLSVSEALE 82
Query: 112 KFGQ-KVQLKWPNDLLLNGNKFCGILIDTCIEKKNNNWAIIGIGLNLGLPRILSK-KINI 169
+ + LKWPND+ K G+L + +K I+GIG+N+ I + K
Sbjct: 83 EITEIPFSLKWPNDVYFQEKKVSGVLRELSKDK-----LIVGIGINVNQREIPEEIKDRA 137
Query: 170 GNISELL--NMEHEKLLAVFICYLIDSLKLFEHYGFSIFMKYWNFNHAYTNKTVDILKLN 227
+ E+ + + +++L + + ++LK F+ F F Y + V +L
Sbjct: 138 TTLYEITGKDWDRKEVLLKVLKRISENLKKFKEKSFKEFKGKIESKMLYLGEEVKLLGEG 197
Query: 228 KIQKGIVIGINKNGCLLLNTKFGKITISSGDVSLR 262
KI G ++G+++ G L+ T+ G I SG+ SLR
Sbjct: 198 KIT-GKLVGLSEKGGALILTEEGIKEILSGEFSLR 231
>pdb|3MDJ|A Chain A, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|B Chain B, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|C Chain C, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
Length = 921
Score = 28.5 bits (62), Expect = 4.1, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 96 TSLPLVISIALSIALKKFGQKVQLKWPNDLLLN 128
+ L + +++A +A + FG V ++W NDL LN
Sbjct: 307 SKLDITMTVAHELAHQWFGNLVTMEWWNDLWLN 339
>pdb|1PC8|B Chain B, Crystal Structure Of A Novel Form Of Mistletoe Lectin From
Himalayan Viscum Album L. At 3.8a Resolution
pdb|1TFM|B Chain B, Crystal Structure Of A Ribosome Inactivating Protein In
Its Naturally Inhibited Form
pdb|1YF8|B Chain B, Crystal Structure Of Himalayan Mistletoe Rip Reveals The
Presence Of A Natural Inhibitor And A New Functionally
Active Sugar-Binding Site
Length = 255
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 123 NDLLLNGNKFCGILIDTCIEKKNNNWAIIGIG 154
NDL + N + ++TC+ ++N+ WA+ G G
Sbjct: 145 NDLCMESNGGS-VWVETCVSQQNDRWALYGDG 175
>pdb|3QNF|A Chain A, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|B Chain B, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|C Chain C, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
Length = 954
Score = 28.1 bits (61), Expect = 5.2, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 96 TSLPLVISIALSIALKKFGQKVQLKWPNDLLLN 128
+ L + +++A +A + FG V ++W NDL LN
Sbjct: 349 SKLGITMTVAHELAHQWFGNLVTMEWWNDLWLN 381
>pdb|2YD0|A Chain A, Crystal Structure Of The Soluble Domain Of Human
Endoplasmic Reticulum Aminopeptidase 1 Erap1
Length = 897
Score = 28.1 bits (61), Expect = 5.2, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 96 TSLPLVISIALSIALKKFGQKVQLKWPNDLLLN 128
+ L + +++A +A + FG V ++W NDL LN
Sbjct: 298 SKLGITMTVAHELAHQWFGNLVTMEWWNDLWLN 330
>pdb|1PEM|A Chain A, Ribonucleotide Reductase Protein R1e From Salmonella
Typhimurium
pdb|1PEO|A Chain A, Ribonucleotide Reductase Protein R1e From Salmonella
Typhimurium
pdb|1PEQ|A Chain A, Ribonucleotide Reductase Protein R1e From Salmonella
Typhimurium
pdb|1PEU|A Chain A, Ribonucleotide Reductase Protein R1e From Salmonella
Typhimurium
pdb|2BQ1|E Chain E, Ribonucleotide Reductase Class 1b Holocomplex R1e,R2f From
Salmonella Typhimurium
pdb|2BQ1|F Chain F, Ribonucleotide Reductase Class 1b Holocomplex R1e,R2f From
Salmonella Typhimurium
Length = 714
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
Query: 195 LKLFEH-----YGFSIFMKYWNFNHAYTNKTVD 222
L+LFEH + F F+ W F +YT KT D
Sbjct: 86 LRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFD 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.141 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,121,692
Number of Sequences: 62578
Number of extensions: 266806
Number of successful extensions: 550
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 507
Number of HSP's gapped (non-prelim): 32
length of query: 265
length of database: 14,973,337
effective HSP length: 97
effective length of query: 168
effective length of database: 8,903,271
effective search space: 1495749528
effective search space used: 1495749528
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)