Query psy15214
Match_columns 265
No_of_seqs 114 out of 1086
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 23:36:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15214.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15214hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00121 birA_ligase birA, bi 100.0 1.2E-62 2.6E-67 433.1 27.9 231 28-262 2-237 (237)
2 PRK06955 biotin--protein ligas 100.0 8E-62 1.7E-66 441.1 30.2 255 7-265 16-297 (300)
3 COG0340 BirA Biotin-(acetyl-Co 100.0 2.6E-62 5.7E-67 429.3 25.4 231 31-263 1-237 (238)
4 PRK08330 biotin--protein ligas 100.0 2.8E-59 6.2E-64 411.4 28.5 228 25-263 2-235 (236)
5 PRK11886 bifunctional biotin-- 100.0 4.1E-59 9E-64 427.0 30.2 251 6-264 64-318 (319)
6 PRK13325 bifunctional biotin-- 100.0 4.6E-59 1E-63 455.1 30.2 253 5-264 65-325 (592)
7 PTZ00275 biotin-acetyl-CoA-car 100.0 1.4E-57 3.1E-62 410.2 28.4 235 25-263 16-283 (285)
8 PTZ00276 biotin/lipoate protei 100.0 1.4E-54 3.1E-59 383.2 24.9 222 24-256 5-241 (245)
9 PRK08477 biotin--protein ligas 100.0 3.1E-54 6.8E-59 372.0 23.4 198 27-246 2-203 (211)
10 PRK05935 biotin--protein ligas 100.0 4.7E-46 1E-50 316.5 18.3 166 28-197 5-177 (190)
11 KOG1536|consensus 100.0 2.8E-34 6.1E-39 268.7 22.8 232 3-248 365-618 (649)
12 PF03099 BPL_LplA_LipB: Biotin 99.9 2E-23 4.4E-28 165.2 7.4 117 30-156 1-125 (125)
13 PF02237 BPL_C: Biotin protein 99.1 2.3E-10 4.9E-15 76.1 7.1 47 216-262 1-48 (48)
14 PRK14348 lipoate-protein ligas 96.9 0.012 2.6E-07 51.4 10.9 123 67-195 80-218 (221)
15 PRK14342 lipoate-protein ligas 96.5 0.049 1.1E-06 47.3 11.4 123 67-196 71-204 (213)
16 COG0095 LplA Lipoate-protein l 96.3 0.0098 2.1E-07 52.8 6.4 139 51-196 63-215 (248)
17 TIGR00214 lipB lipoate-protein 96.3 0.075 1.6E-06 45.2 11.4 122 67-195 51-183 (184)
18 PRK14344 lipoate-protein ligas 96.2 0.11 2.4E-06 45.4 11.9 122 67-195 89-221 (223)
19 PRK14345 lipoate-protein ligas 95.5 0.23 5E-06 43.8 11.4 123 67-196 77-216 (234)
20 TIGR00545 lipoyltrans lipoyltr 95.4 0.047 1E-06 50.4 7.0 123 57-193 67-208 (324)
21 PRK14343 lipoate-protein ligas 95.2 0.32 7E-06 42.9 11.2 124 67-196 81-219 (235)
22 COG0321 LipB Lipoate-protein l 95.0 0.51 1.1E-05 41.0 11.6 123 67-196 77-211 (221)
23 PRK14349 lipoate-protein ligas 94.9 0.59 1.3E-05 40.8 11.8 122 67-196 66-205 (220)
24 PRK14341 lipoate-protein ligas 94.1 0.88 1.9E-05 39.6 11.2 87 103-195 106-211 (213)
25 PF04017 DUF366: Domain of unk 93.9 1.1 2.4E-05 37.8 10.8 103 81-193 64-169 (183)
26 PRK03822 lplA lipoate-protein 93.2 0.31 6.6E-06 45.4 7.2 118 70-195 76-212 (338)
27 COG2029 Uncharacterized conser 92.3 1.7 3.7E-05 36.1 9.5 85 105-198 93-178 (189)
28 PF01423 LSM: LSM domain ; In 91.9 1.3 2.8E-05 30.7 7.5 49 215-263 5-59 (67)
29 PRK14347 lipoate-protein ligas 91.4 7 0.00015 33.9 12.8 86 104-194 107-207 (209)
30 PRK14061 unknown domain/lipoat 91.3 0.82 1.8E-05 45.3 7.8 138 51-195 264-436 (562)
31 PRK14346 lipoate-protein ligas 91.2 3.5 7.7E-05 36.2 10.9 62 128-195 157-228 (230)
32 PF14563 DUF4444: Domain of un 90.6 0.66 1.4E-05 29.5 4.2 25 230-254 10-34 (42)
33 PF10842 DUF2642: Protein of u 86.3 6 0.00013 27.9 7.3 40 210-250 13-52 (66)
34 cd01726 LSm6 The eukaryotic Sm 84.3 6.3 0.00014 27.5 6.8 48 216-263 8-60 (67)
35 cd01731 archaeal_Sm1 The archa 84.3 6.3 0.00014 27.5 6.8 48 216-263 8-60 (68)
36 smart00651 Sm snRNP Sm protein 84.2 4.7 0.0001 27.7 6.1 49 215-263 5-59 (67)
37 cd00600 Sm_like The eukaryotic 83.6 4 8.6E-05 27.7 5.5 48 216-263 4-56 (63)
38 PRK00737 small nuclear ribonuc 82.8 7.5 0.00016 27.6 6.7 48 216-263 12-64 (72)
39 cd06168 LSm9 The eukaryotic Sm 81.3 4.4 9.5E-05 29.2 5.0 34 215-248 7-41 (75)
40 cd01722 Sm_F The eukaryotic Sm 80.9 7.7 0.00017 27.2 6.1 48 216-263 9-61 (68)
41 cd01717 Sm_B The eukaryotic Sm 79.3 4 8.6E-05 29.5 4.4 36 213-248 5-41 (79)
42 cd01719 Sm_G The eukaryotic Sm 76.4 11 0.00025 26.7 5.9 49 215-263 7-60 (72)
43 cd01728 LSm1 The eukaryotic Sm 76.1 19 0.00042 25.8 7.1 34 215-248 9-43 (74)
44 cd01732 LSm5 The eukaryotic Sm 75.5 18 0.00039 26.0 6.8 48 216-263 11-66 (76)
45 smart00333 TUDOR Tudor domain. 74.8 15 0.00033 24.1 6.0 47 216-262 4-53 (57)
46 PRK14645 hypothetical protein; 74.3 9.5 0.00021 31.4 5.8 53 207-260 91-143 (154)
47 cd01725 LSm2 The eukaryotic Sm 72.8 21 0.00046 25.9 6.8 49 215-263 8-63 (81)
48 cd01721 Sm_D3 The eukaryotic S 72.4 26 0.00055 24.7 6.9 49 215-264 7-61 (70)
49 cd01723 LSm4 The eukaryotic Sm 72.0 23 0.00049 25.4 6.7 48 216-263 9-62 (76)
50 KOG3482|consensus 71.4 10 0.00022 27.1 4.5 48 216-263 16-68 (79)
51 cd01727 LSm8 The eukaryotic Sm 70.7 19 0.0004 25.6 6.0 34 215-248 6-40 (74)
52 cd01724 Sm_D1 The eukaryotic S 70.1 29 0.00062 25.8 7.1 49 216-264 9-62 (90)
53 cd01733 LSm10 The eukaryotic S 68.9 31 0.00067 24.9 6.8 49 216-264 17-70 (78)
54 cd01729 LSm7 The eukaryotic Sm 66.0 14 0.00031 26.9 4.6 35 213-247 7-42 (81)
55 PF11095 Gemin7: Gem-associate 63.3 29 0.00063 25.4 5.7 56 204-259 9-73 (80)
56 PF14438 SM-ATX: Ataxin 2 SM d 60.5 29 0.00063 24.7 5.3 33 214-246 8-44 (77)
57 cd01734 YlxS_C YxlS is a Bacil 59.5 21 0.00046 25.9 4.6 49 210-259 17-74 (83)
58 KOG0325|consensus 59.4 32 0.0007 30.0 6.2 80 112-197 123-214 (226)
59 PRK14638 hypothetical protein; 58.3 38 0.00082 27.7 6.3 57 202-259 84-141 (150)
60 COG1958 LSM1 Small nuclear rib 54.4 50 0.0011 23.6 5.8 48 216-263 15-71 (79)
61 PRK14630 hypothetical protein; 50.9 49 0.0011 26.8 5.8 48 211-259 90-137 (143)
62 cd01720 Sm_D2 The eukaryotic S 45.7 1.2E+02 0.0025 22.5 6.6 32 217-248 13-45 (87)
63 PRK14631 hypothetical protein; 45.1 45 0.00098 28.0 4.8 56 204-259 103-165 (174)
64 PRK14637 hypothetical protein; 45.1 75 0.0016 26.0 6.0 52 207-259 87-140 (151)
65 PRK14640 hypothetical protein; 43.7 1E+02 0.0022 25.2 6.6 52 207-259 86-142 (152)
66 PRK14633 hypothetical protein; 43.0 50 0.0011 27.0 4.7 58 202-260 78-141 (150)
67 smart00743 Agenet Tudor-like d 42.9 99 0.0021 20.5 6.3 45 215-259 3-53 (61)
68 PRK14646 hypothetical protein; 42.7 45 0.00098 27.4 4.4 58 201-259 83-145 (155)
69 PRK14639 hypothetical protein; 42.6 88 0.0019 25.2 6.0 52 207-259 77-131 (140)
70 cd04883 ACT_AcuB C-terminal AC 41.9 20 0.00044 24.4 1.9 17 105-123 56-72 (72)
71 PRK00092 ribosome maturation p 39.4 46 0.001 27.1 4.0 56 202-258 82-144 (154)
72 PF02576 DUF150: Uncharacteris 39.1 35 0.00076 27.3 3.2 48 202-250 71-123 (141)
73 PF12701 LSM14: Scd6-like Sm d 37.9 1.2E+02 0.0026 22.9 5.7 33 214-246 4-38 (96)
74 PRK14636 hypothetical protein; 37.7 51 0.0011 27.7 4.0 57 202-259 82-144 (176)
75 PRK09618 flgD flagellar basal 36.9 1E+02 0.0022 25.1 5.4 33 212-244 86-120 (142)
76 PF06372 Gemin6: Gemin6 protei 35.7 2E+02 0.0042 24.1 7.1 44 215-258 14-62 (166)
77 PF09465 LBR_tudor: Lamin-B re 34.3 1.5E+02 0.0032 20.1 7.0 45 215-259 6-54 (55)
78 COG0160 GabT 4-aminobutyrate a 32.8 71 0.0015 31.0 4.6 83 28-112 225-339 (447)
79 COG0779 Uncharacterized protei 32.4 1.9E+02 0.0042 23.7 6.6 46 209-255 90-140 (153)
80 PRK14634 hypothetical protein; 31.7 1.9E+02 0.004 23.8 6.4 52 208-260 90-146 (155)
81 cd04508 TUDOR Tudor domains ar 30.9 1.4E+02 0.0029 18.6 5.6 37 219-255 2-42 (48)
82 PRK14647 hypothetical protein; 30.6 85 0.0018 25.8 4.2 58 201-259 82-150 (159)
83 cd01718 Sm_E The eukaryotic Sm 29.9 2.1E+02 0.0045 20.8 5.7 44 220-263 20-71 (79)
84 PF05899 Cupin_3: Protein of u 27.9 77 0.0017 22.3 3.1 25 240-264 33-58 (74)
85 cd01730 LSm3 The eukaryotic Sm 27.4 1.5E+02 0.0032 21.4 4.6 31 217-247 10-41 (82)
86 PRK04950 ProP expression regul 27.0 96 0.0021 27.0 4.0 41 216-257 168-209 (213)
87 TIGR00008 infA translation ini 26.7 2.1E+02 0.0046 20.2 5.1 31 230-260 7-39 (68)
88 PF13861 FLgD_tudor: FlgD Tudo 25.9 2.1E+02 0.0046 19.2 5.8 47 212-258 6-56 (61)
89 PF14427 Pput2613-deam: Pput_2 25.9 60 0.0013 25.3 2.3 20 112-131 91-114 (118)
90 cd04479 RPA3 RPA3: A subfamily 25.7 2.2E+02 0.0047 21.4 5.4 28 215-250 12-39 (101)
91 PRK11911 flgD flagellar basal 25.6 2.2E+02 0.0048 23.1 5.6 37 213-249 88-126 (140)
92 COG5414 TATA-binding protein-a 25.5 74 0.0016 29.1 3.2 34 106-139 89-127 (392)
93 PRK12442 translation initiatio 25.1 2.6E+02 0.0056 20.8 5.4 32 230-261 9-42 (87)
94 PF08661 Rep_fac-A_3: Replicat 22.4 3.5E+02 0.0075 20.4 6.3 33 215-254 15-49 (109)
95 PRK06792 flgD flagellar basal 22.0 2.4E+02 0.0052 24.1 5.4 38 213-250 113-153 (190)
96 TIGR02383 Hfq RNA chaperone Hf 21.8 2.8E+02 0.0061 19.2 7.7 50 209-259 6-56 (61)
97 PRK02001 hypothetical protein; 21.7 3.6E+02 0.0078 22.1 6.3 43 202-244 74-117 (152)
98 PF09342 DUF1986: Domain of un 20.9 1.6E+02 0.0035 26.4 4.3 33 108-140 5-38 (267)
99 cd01716 Hfq Hfq, an abundant, 20.9 2.9E+02 0.0064 19.0 6.9 43 217-260 10-53 (61)
100 PF05614 DUF782: Circovirus pr 20.6 46 0.001 24.2 0.7 10 119-128 31-41 (104)
101 PF00202 Aminotran_3: Aminotra 20.4 50 0.0011 30.4 1.1 76 37-114 196-297 (339)
No 1
>TIGR00121 birA_ligase birA, biotin-[acetyl-CoA-carboxylase] ligase region. The protein name suggests that this enzyme transfers biotin only to acetyl-CoA-carboxylase but it also transfers the biotin moiety to other proteins. The apparent orthologs among the eukaryotes are larger proteins that contain a single copy of this domain.
Probab=100.00 E-value=1.2e-62 Score=433.06 Aligned_cols=231 Identities=32% Similarity=0.494 Sum_probs=211.0
Q ss_pred EEEEcccccHHHHHHHHhhcCC-CCCCeEEEeCcccCCCCCCCCeeeeCCCCceEEEEeeecCcCccccCchHHHHHHHH
Q psy15214 28 IRTILSTNSTNSNLLSIANTGL-LFHPTFLATKIQTAGRGRAGRIWYSEPEITLTFSLAWKFKISLKYLTSLPLVISIAL 106 (265)
Q Consensus 28 i~~~~~v~STn~~a~~~~~~~~-~~~~~vv~A~~QT~GrGR~gr~W~Sp~g~~L~~S~~~~~~~~~~~~~~l~l~~alav 106 (265)
++++++++|||++|+ +++.+ .+++++|+|++||+||||+||+|+||+| +||||++++++.++...+.+++++|+|+
T Consensus 2 i~~~~~~~STn~~~~--~~~~~~~~~~~vv~A~~QTaGRGR~gr~W~Sp~g-~l~~S~~l~~~~~~~~~~~ls~~~~lAv 78 (237)
T TIGR00121 2 VIVLDVIDSTNQYAL--ELAKEGKLKGDLVVAEYQTAGRGRRGRKWLSPEG-GLYFSLILRPDLPKSPAPGLTLVAGIAI 78 (237)
T ss_pred EEEEeecCCHHHHHH--HHHhcCCCCCeEEEEcccCCCCCCCCCcccCCCC-ceEEEEEECCCCChhHhhhhHHHHHHHH
Confidence 678999999999999 87765 4589999999999999999999999999 8999999998877778889999999999
Q ss_pred HHHHHHcCCccceeeCCcEEEcCeeEEEEEEEeeecCCCccEEEEEeccccCCCCCCCCCcc--ccccccccC--CCHHH
Q psy15214 107 SIALKKFGQKVQLKWPNDLLLNGNKFCGILIDTCIEKKNNNWAIIGIGLNLGLPRILSKKIN--IGNISELLN--MEHEK 182 (265)
Q Consensus 107 ~~aL~~~~~~~~iKWPNDI~~~~~Ki~GIL~E~~~~~~~~~~~viGIGiNv~~~~~~~~~~~--atsL~~~~g--~~~~~ 182 (265)
+++|++++.+++||||||||+++||+||||+|.....+...++||||||||++++. ++.+. ++||.++.+ +++++
T Consensus 79 ~~al~~~~~~~~iKWPNDI~~~~kKi~GIL~E~~~~~~~~~~vviGIGiNv~~~~~-~~~~~~~a~sl~~~~~~~~~~~~ 157 (237)
T TIGR00121 79 AEVLKELGDQVQVKWPNDILLKDKKLGGILTELTGKENRADYVVIGIGINVQNRKP-AESLREQAISLSEEAGIDLDRGE 157 (237)
T ss_pred HHHHHHhCCCCCCcCCceEEECCeEEEEEEEEcccCCCCcCEEEEEEEEccCCCCC-chhhcccceehHHhhCCCCCHHH
Confidence 99999998899999999999999999999999887666667899999999997543 33333 899988766 99999
Q ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHhcccCCCEEEEEECCeEEEEEEEeECCCceEEEEeCCceEEEEeeeEEEe
Q psy15214 183 LLAVFICYLIDSLKLFEHYGFSIFMKYWNFNHAYTNKTVDILKLNKIQKGIVIGINKNGCLLLNTKFGKITISSGDVSLR 262 (265)
Q Consensus 183 l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gk~V~v~~~~~~~~G~~~gI~~~G~L~l~~~~g~~~~~~Gev~l~ 262 (265)
|++.++++|+.++..|.+++|+.++++|++++.++|++|++..+++.++|++.|||++|+|+|+++++.++|++|||++|
T Consensus 158 ll~~l~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~g~~V~v~~~~~~~~G~~~gI~~~G~L~v~~~~~~~~~~sGev~~~ 237 (237)
T TIGR00121 158 LIEGFLRNFEENLEWFEQEGIDEILSKWEKLSAHIGREVSLTTGNGEIEGIARGIDKDGALLLEDGGGIKKIISGEISLR 237 (237)
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHhhhccCCeEEEEeCCcEEEEEEEeECCCceEEEEeCCeEEEEEEEEEEEC
Confidence 99999999999999999999999999999999999999999988888999999999999999997777889999999985
No 2
>PRK06955 biotin--protein ligase; Provisional
Probab=100.00 E-value=8e-62 Score=441.14 Aligned_cols=255 Identities=33% Similarity=0.524 Sum_probs=220.5
Q ss_pred CCCHHHHHhhhccCCCCCceeEEEEcccccHHHHHHHHhhcCC-------CCCCeEEEeCcccCCCCCCCCeeeeCCCCc
Q psy15214 7 SLNTSRIKNLYYNYNTDTKIDIRTILSTNSTNSNLLSIANTGL-------LFHPTFLATKIQTAGRGRAGRIWYSEPEIT 79 (265)
Q Consensus 7 ~l~~~~i~~~~~~~~~~~~~~i~~~~~v~STn~~a~~~~~~~~-------~~~~~vv~A~~QT~GrGR~gr~W~Sp~g~~ 79 (265)
.|+.+.|+..+.+.. .++++++|++|+|||++|+ +++++ .+++++|+|++||+||||+||+|+||+|+|
T Consensus 16 ~l~~~~i~~~~~~~~--~~~~i~~~~~v~STN~~a~--~~~~~~~~~~~~~~~g~vvvA~~QTaGRGR~GR~W~Sp~G~~ 91 (300)
T PRK06955 16 RIDRDRLDAHLAAAA--RAWPLEIVEETGSTNADLM--ARLKALPRSADALPAPIVRVAYEQTAGRGRQGRPWFAQPGNA 91 (300)
T ss_pred CCCHHHHHhhccccc--CCceEEEEeCCCCHHHHHH--HHHHhcccccccCCCCeEEEECccccCCCCCcCcccCCCCCc
Confidence 589999998873222 2578999999999999998 76554 268899999999999999999999999988
Q ss_pred eEEEEeeecCcCccccCchHHHHHHHHHHHHHHc----CCccceeeCCcEEEcCeeEEEEEEEeeecCCCccEEEEEecc
Q psy15214 80 LTFSLAWKFKISLKYLTSLPLVISIALSIALKKF----GQKVQLKWPNDLLLNGNKFCGILIDTCIEKKNNNWAIIGIGL 155 (265)
Q Consensus 80 L~~S~~~~~~~~~~~~~~l~l~~alav~~aL~~~----~~~~~iKWPNDI~~~~~Ki~GIL~E~~~~~~~~~~~viGIGi 155 (265)
||||++++++.++.....+++++|+|++++|+++ +.+++||||||||++|||+||||+|.....+....+||||||
T Consensus 92 L~~Si~l~~~~~~~~~~~Lsl~~glAv~~al~~~~~~~~~~~~iKWPNDIl~~gkKiaGILiE~~~~~~~~~~vVIGIGI 171 (300)
T PRK06955 92 LLFSVACVLPRPVAALAGLSLAVGVALAEALAALPAALGQRIALKWPNDLLIAGRKLAGILIETVWATPDATAVVIGIGL 171 (300)
T ss_pred EEEEeEecCCCChHHhhhHHHHHHHHHHHHHHHhhcccCCceeeeCCceeeECCcEEEEEEEEcccCCCCccEEEEEEEE
Confidence 9999999988777778899999999999999987 458999999999999999999999988776667789999999
Q ss_pred ccCCCCCCCC--------------CccccccccccC-CCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHhcccCCCE
Q psy15214 156 NLGLPRILSK--------------KINIGNISELLN-MEHEKLLAVFICYLIDSLKLFEHYGFSIFMKYWNFNHAYTNKT 220 (265)
Q Consensus 156 Nv~~~~~~~~--------------~~~atsL~~~~g-~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gk~ 220 (265)
||+++++.++ .+.++++..... ++++++++.+++.|++.|..|.+.+|+.++++|++++.++|++
T Consensus 172 Nv~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~ll~~ll~~l~~~~~~~~~~g~~~~~~~~~~~~~~~g~~ 251 (300)
T PRK06955 172 NVRRADAVAAEVDALRAREAALARGLPPVALAAACAGANLTDTLAAALNALAPALQAFGADGLAPFAARWHALHAYAGRE 251 (300)
T ss_pred eeCCCccccccccccccccccccccccchhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhcCCCe
Confidence 9998764211 111344433222 8999999999999999999999999999999999999999999
Q ss_pred EEEEEC-CeEEEEEEEeECCCceEEEEeCCceEEEEeeeEEEeecC
Q psy15214 221 VDILKL-NKIQKGIVIGINKNGCLLLNTKFGKITISSGDVSLRLKK 265 (265)
Q Consensus 221 V~v~~~-~~~~~G~~~gI~~~G~L~l~~~~g~~~~~~Gev~l~~~~ 265 (265)
|++... ++.++|++.|||++|+|+|++++|.+.|++|||+++.++
T Consensus 252 V~v~~~~~~~~~G~~~gId~~G~L~v~~~~g~~~~~sGeV~~~~~~ 297 (300)
T PRK06955 252 VVLLEDGAELARGVAHGIDETGQLLLDTPAGRQAIAAGDVSLREAD 297 (300)
T ss_pred EEEEECCCcEEEEEEeeECCCceEEEEeCCCeEEEEEEEEEEeccC
Confidence 999765 455799999999999999999999889999999998764
No 3
>COG0340 BirA Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]
Probab=100.00 E-value=2.6e-62 Score=429.31 Aligned_cols=231 Identities=35% Similarity=0.486 Sum_probs=214.5
Q ss_pred EcccccHHHHHHHHhhcCC-CCCCeEEEeCcccCCCCCCCCeeeeCCCCceEEEEeeecCcCccccCchHHHHHHHHHHH
Q psy15214 31 ILSTNSTNSNLLSIANTGL-LFHPTFLATKIQTAGRGRAGRIWYSEPEITLTFSLAWKFKISLKYLTSLPLVISIALSIA 109 (265)
Q Consensus 31 ~~~v~STn~~a~~~~~~~~-~~~~~vv~A~~QT~GrGR~gr~W~Sp~g~~L~~S~~~~~~~~~~~~~~l~l~~alav~~a 109 (265)
+++++|||++|+ +++.. .+.+++|+|++||+||||+||+|+||+|.+||||++++|+.++..++.+++++|+||++|
T Consensus 1 ~~~i~STn~~a~--~~~~~~~~~~~vvvA~~QTaGRGR~GR~W~Sp~G~~l~~S~~l~~~~~~~~~~~lsl~~g~av~~a 78 (238)
T COG0340 1 FDEIDSTNTEAK--ERAASGAPEGTVVVAEEQTAGRGRRGRKWSSPKGGGLYMSLLLRPDLPPAELPSLSLVAGLAVAEA 78 (238)
T ss_pred CCccchHHHHHH--HHHHhCCCCCcEEEEeeeccCcCCCCCcccCCCCCCEEEEEEEcCCcChhhcchhHHHHHHHHHHH
Confidence 579999999999 88865 777889999999999999999999999889999999999988888999999999999999
Q ss_pred HHHcCCccceeeCCcEEEcCeeEEEEEEEeeecCCCccEEEEEeccccCCCCCCCCCcc--ccccccccC-CCHHHHHHH
Q psy15214 110 LKKFGQKVQLKWPNDLLLNGNKFCGILIDTCIEKKNNNWAIIGIGLNLGLPRILSKKIN--IGNISELLN-MEHEKLLAV 186 (265)
Q Consensus 110 L~~~~~~~~iKWPNDI~~~~~Ki~GIL~E~~~~~~~~~~~viGIGiNv~~~~~~~~~~~--atsL~~~~g-~~~~~l~~~ 186 (265)
|++++.+++||||||||+++||+||||+|.....+...++||||||||+++++.+.++. +|||.++.. ++|++|++.
T Consensus 79 l~~~~~~~~iKWPNDv~~~~kKl~GIL~E~~~~~~~~~~~viGIGINv~~~~~~~~~i~~~atsL~~~~~~~~r~~l~~~ 158 (238)
T COG0340 79 LRKFGIDVRIKWPNDVLLNGKKLAGILVEAVGDENGLLAVVVGIGINVNNPPPDFEDIGQPATSLQEEGEEIDREELLAK 158 (238)
T ss_pred HHHhCcccCccCCcceeECCcceEEEEEeeeecCCCceEEEEEEEEeeccCCcchhhhhhhhhhHHhhhCCCCHHHHHHH
Confidence 99999999999999999999999999999998877778999999999999876543454 999998865 999999999
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHhcccCCCEEEEEECCeEE-EEEEEeECCCceEEEEeCCc-eEEEEeeeEEEee
Q psy15214 187 FICYLIDSLKLFEHYGFSIFMKYWNFNHAYTNKTVDILKLNKIQ-KGIVIGINKNGCLLLNTKFG-KITISSGDVSLRL 263 (265)
Q Consensus 187 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gk~V~v~~~~~~~-~G~~~gI~~~G~L~l~~~~g-~~~~~~Gev~l~~ 263 (265)
+++.|+.+|..|.+.++.+++++|++++..+|++|++..+++.. .|++.|||++|+|+++.++| ++.+++|||+++.
T Consensus 159 ll~~l~~~~~~~~~~~~~~i~~~~~~~~~~~g~~V~~~~~~~~~~gg~a~~id~~G~L~l~~~~g~~~~~~~Gev~~~~ 237 (238)
T COG0340 159 LLKELEKYLRQFLREGFAPILARWRARSLSLGKEVRLTLGGGVIFGGIAKGIDEDGALLLETDDGEVQTIYSGEVSLRR 237 (238)
T ss_pred HHHHHHHHHHHHHhcChhHHHHHHHHHhccCCCEEEEEeCCCcEeeeEEEEECCCceEEEEeCCCeEEEEeccEEEeec
Confidence 99999999999999999999999999999999999999997554 45999999999999999988 8999999999985
No 4
>PRK08330 biotin--protein ligase; Provisional
Probab=100.00 E-value=2.8e-59 Score=411.36 Aligned_cols=228 Identities=28% Similarity=0.370 Sum_probs=205.5
Q ss_pred ceeEEEEcccccHHHHHHHHhhcCCCCCCeEEEeCcccCCCCCCCCeeeeCCCCceEEEEeeecCcCccccCchHHHHHH
Q psy15214 25 KIDIRTILSTNSTNSNLLSIANTGLLFHPTFLATKIQTAGRGRAGRIWYSEPEITLTFSLAWKFKISLKYLTSLPLVISI 104 (265)
Q Consensus 25 ~~~i~~~~~v~STn~~a~~~~~~~~~~~~~vv~A~~QT~GrGR~gr~W~Sp~g~~L~~S~~~~~~~~~~~~~~l~l~~al 104 (265)
+++++++++++|||++++ +++...+++++|+|++||+||||+||+|+||+| |||||++++++.++...+.+++++|+
T Consensus 2 g~~i~~~~~v~STn~~~~--~~~~~~~~~~vv~A~~QT~GrGR~gr~W~Sp~G-~l~~S~~l~~~~~~~~~~~l~~~~~~ 78 (236)
T PRK08330 2 GRNIIYFDEVDSTNEYAK--RIAPDEEEGTVIVADRQTAGHGRKGRAWASPEG-GLWMSVILKPKVSPEHLPKLVFLGAL 78 (236)
T ss_pred CceEEEEcccCcHHHHHH--HHhcCCCCCEEEEECccccCCCCCCCeeeCCCC-CeEEEEEEcCCCCHHHHHHHHHHHHH
Confidence 356899999999999999 876667889999999999999999999999999 99999999988777778899999999
Q ss_pred HHHHHHHHcCCccceeeCCcEEEcCeeEEEEEEEeeecCCCccEEEEEeccccCCCCCCCCCcc--ccccccccC--CCH
Q psy15214 105 ALSIALKKFGQKVQLKWPNDLLLNGNKFCGILIDTCIEKKNNNWAIIGIGLNLGLPRILSKKIN--IGNISELLN--MEH 180 (265)
Q Consensus 105 av~~aL~~~~~~~~iKWPNDI~~~~~Ki~GIL~E~~~~~~~~~~~viGIGiNv~~~~~~~~~~~--atsL~~~~g--~~~ 180 (265)
|++++|++++.++++|||||||+++||+||||+|... ..+||||||||+++ .+..+. +|||++..+ +++
T Consensus 79 av~~~l~~~g~~~~iKWPNDI~~~~kKi~GILiE~~~-----~~~viGiGiNv~~~--~p~~l~~~atsL~~~~~~~~~~ 151 (236)
T PRK08330 79 AVVDTLREFGIEGKIKWPNDVLVNYKKIAGVLVEGKG-----DFVVLGIGLNVNNE--IPDELRETATSMKEVLGREVPL 151 (236)
T ss_pred HHHHHHHHcCCCccccCCCeEEECCeEEEEEeEEEeC-----CEEEEEEEEecCCC--CCcccccccccHHHhhCCCCCH
Confidence 9999999999999999999999999999999999863 27999999999863 222333 999988766 899
Q ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHhcccCCCEEEEEECCeEE-EEEEEeECCCceEEEEeCCc-eEEEEeee
Q psy15214 181 EKLLAVFICYLIDSLKLFEHYGFSIFMKYWNFNHAYTNKTVDILKLNKIQ-KGIVIGINKNGCLLLNTKFG-KITISSGD 258 (265)
Q Consensus 181 ~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gk~V~v~~~~~~~-~G~~~gI~~~G~L~l~~~~g-~~~~~~Ge 258 (265)
+++++.++++|...+..|.+.+ ..++++|++++.++|++|++..+++.. +|++.|||++|+|+|++++| .+.+++||
T Consensus 152 ~~l~~~l~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~g~~v~~~~~~~~~~~G~~~gI~~~G~L~v~~~~g~~~~~~~ge 230 (236)
T PRK08330 152 IEVFKRLVENLDRWYKLFLEGP-GEILEEVKGRSMILGKRVKIIGDGEILVEGIAEDIDEFGALILRLDDGTVKKVLYGD 230 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-hHHHHHHHHHHHhcCCeEEEEECCcEEEEEEEEEECCCCEEEEEECCCCEEEEEEEE
Confidence 9999999999999999997765 789999999999999999998877665 69999999999999999998 67999999
Q ss_pred EEEee
Q psy15214 259 VSLRL 263 (265)
Q Consensus 259 v~l~~ 263 (265)
|++|.
T Consensus 231 v~~~~ 235 (236)
T PRK08330 231 VSLRF 235 (236)
T ss_pred EEEec
Confidence 99974
No 5
>PRK11886 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; Provisional
Probab=100.00 E-value=4.1e-59 Score=426.97 Aligned_cols=251 Identities=31% Similarity=0.512 Sum_probs=221.9
Q ss_pred CCCCHHHHHhhhccCCCCCceeEEEEcccccHHHHHHHHhhcCCCCCCeEEEeCcccCCCCCCCCeeeeCCCCceEEEEe
Q psy15214 6 HSLNTSRIKNLYYNYNTDTKIDIRTILSTNSTNSNLLSIANTGLLFHPTFLATKIQTAGRGRAGRIWYSEPEITLTFSLA 85 (265)
Q Consensus 6 ~~l~~~~i~~~~~~~~~~~~~~i~~~~~v~STn~~a~~~~~~~~~~~~~vv~A~~QT~GrGR~gr~W~Sp~g~~L~~S~~ 85 (265)
..++++.|...+ .++.++++++++|||++++ +.....+++++|+|++||+||||+||+|+||+|+|||||++
T Consensus 64 ~~l~~~~l~~~l------~~~~i~~~~~v~STn~~~~--e~~~~~~~~~vv~A~~Qt~GrGR~gr~W~Sp~g~~L~~S~~ 135 (319)
T PRK11886 64 DLLDPERISSQL------PPGRVTVLPVIDSTNQYLL--DRIAELKSGDLCLAEYQTAGRGRRGRQWFSPFGGNLYLSLY 135 (319)
T ss_pred ccCCHHHHHhhC------CCCeEEEEeCCCCHHHHHH--HhhcCCCCCcEEEECccCCCCCCCCCcccCCCCCCEEEEEE
Confidence 457888888655 3456999999999999999 87744789999999999999999999999999988999999
Q ss_pred eecCcCccccCchHHHHHHHHHHHHHHcCC-ccceeeCCcEEEcCeeEEEEEEEeeecCCCccEEEEEeccccCCCCCCC
Q psy15214 86 WKFKISLKYLTSLPLVISIALSIALKKFGQ-KVQLKWPNDLLLNGNKFCGILIDTCIEKKNNNWAIIGIGLNLGLPRILS 164 (265)
Q Consensus 86 ~~~~~~~~~~~~l~l~~alav~~aL~~~~~-~~~iKWPNDI~~~~~Ki~GIL~E~~~~~~~~~~~viGIGiNv~~~~~~~ 164 (265)
++++.++...+.+++++|+|++++|++++. +++||||||||++|||+||||+|.....+...++|||||||||+++...
T Consensus 136 ~~~~~~~~~~~~l~l~~~~av~~al~~~~~~~~~iKWPNDI~~~~kKl~GIL~E~~~~~~~~~~~viGIGiNv~~~~~~~ 215 (319)
T PRK11886 136 WRLNQGPAQAMGLSLVVGIAIAEALRRLGAIDVGLKWPNDIYLNDRKLAGILVELSGETGDAAHVVIGIGINVAMPDFPE 215 (319)
T ss_pred eCCCCChHHHhhHHHHHHHHHHHHHHHhcCCCcceeCCceeeECCeeEEEEEEEeccCCCCccEEEEEEEEccCCCCCch
Confidence 998877777889999999999999999876 9999999999999999999999987666666789999999999854321
Q ss_pred CCcc--ccccccccC-CCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHhcccCCCEEEEEECCeEEEEEEEeECCCc
Q psy15214 165 KKIN--IGNISELLN-MEHEKLLAVFICYLIDSLKLFEHYGFSIFMKYWNFNHAYTNKTVDILKLNKIQKGIVIGINKNG 241 (265)
Q Consensus 165 ~~~~--atsL~~~~g-~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gk~V~v~~~~~~~~G~~~gI~~~G 241 (265)
+.++ ++||++... ++++++++.++++|+.++..|.+.+|+.++++|++++.++|++|++..+++.++|++.|||++|
T Consensus 216 ~~~~~~~~sl~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~G~~~gi~~~G 295 (319)
T PRK11886 216 ELIDQPWSDLQEAGPTIDRNQLAAELIKQLRAALELFEQEGLAPFLERWKKLDLFLGREVKLIIGDKEISGIARGIDEQG 295 (319)
T ss_pred hhhccceeeHhhcCCCCCHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhccccCCeEEEEeCCcEEEEEEEEECCCc
Confidence 1133 788887633 9999999999999999999999999999999999999999999999988888999999999999
Q ss_pred eEEEEeCCceEEEEeeeEEEeec
Q psy15214 242 CLLLNTKFGKITISSGDVSLRLK 264 (265)
Q Consensus 242 ~L~l~~~~g~~~~~~Gev~l~~~ 264 (265)
+|+|+++++.+.|++|||+++..
T Consensus 296 ~L~i~~~g~~~~~~~gev~~~~~ 318 (319)
T PRK11886 296 ALLLEDDGVEKPFNGGEISLRSW 318 (319)
T ss_pred eEEEEeCCcEEEEEEeEEEEecC
Confidence 99999666688999999999863
No 6
>PRK13325 bifunctional biotin--[acetyl-CoA-carboxylase] ligase/pantothenate kinase; Reviewed
Probab=100.00 E-value=4.6e-59 Score=455.05 Aligned_cols=253 Identities=29% Similarity=0.466 Sum_probs=222.9
Q ss_pred cCCCCHHHHHhhhccCCCCCceeEEEEcccccHHHHHHHHhhcCC---CCCCeEEEeCcccCCCCCCCCeeeeCCCCceE
Q psy15214 5 SHSLNTSRIKNLYYNYNTDTKIDIRTILSTNSTNSNLLSIANTGL---LFHPTFLATKIQTAGRGRAGRIWYSEPEITLT 81 (265)
Q Consensus 5 ~~~l~~~~i~~~~~~~~~~~~~~i~~~~~v~STn~~a~~~~~~~~---~~~~~vv~A~~QT~GrGR~gr~W~Sp~g~~L~ 81 (265)
.+.||++.|+..+.+ .++++.+++++||||++++ +++.. .+++++|+|++||+||||+||+|+||+|.|||
T Consensus 65 ~~lL~~~~I~~~l~~----~~~~i~~~~~idSTN~~~~--~~~~~~~~~~~g~vvvAe~QTaGRGRrGR~W~Sp~G~~Ly 138 (592)
T PRK13325 65 LAVFDAEGLRELGER----SGFQTALKHECASSNDEIL--ELARIAPDKAHKTICVTHLQSKGRGRQGRKWSHRLGECLM 138 (592)
T ss_pred cccCCHHHHHHhhhc----CCCcEEEEeCCCCHHHHHH--HHHhhccCCCCCeEEEECccCCCCCCCCCcccCCCCCcEE
Confidence 367999999988822 2467999999999999999 76543 57899999999999999999999999998899
Q ss_pred EEEeeecCcCccccCchHHHHHHHHHHHHHHcCCccceeeCCcEEEcCeeEEEEEEEeeecCCCccEEEEEeccccCCCC
Q psy15214 82 FSLAWKFKISLKYLTSLPLVISIALSIALKKFGQKVQLKWPNDLLLNGNKFCGILIDTCIEKKNNNWAIIGIGLNLGLPR 161 (265)
Q Consensus 82 ~S~~~~~~~~~~~~~~l~l~~alav~~aL~~~~~~~~iKWPNDI~~~~~Ki~GIL~E~~~~~~~~~~~viGIGiNv~~~~ 161 (265)
||++++++.++..+..+++++|+||+++|++++.+++||||||||++|||+||||+|.. ..+...++||||||||+.++
T Consensus 139 ~S~~l~~~~~~~~~~~Lsl~vgvAv~~aL~~~g~~v~lKWPNDIl~~gkKlaGILiE~~-~~~~~~~vVIGIGINv~~p~ 217 (592)
T PRK13325 139 FSFGWVFDRPQYELGSLSPVAAVACRRALSRLGLKTQIKWPNDLVVGRDKLGGILIETV-RTGGKTVAVVGIGINFVLPK 217 (592)
T ss_pred EEeeecCCCChhhhhhHHHHHHHHHHHHHHHcCCCceEeCcceEEECCceEEEEEEeee-ecCCCcEEEEEEEEeeCCCc
Confidence 99999988777788999999999999999999999999999999999999999999988 43455789999999999754
Q ss_pred CCCCCcccccccccc---C-CCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHhcccCCCEEEEEEC-CeEEEEEEEe
Q psy15214 162 ILSKKINIGNISELL---N-MEHEKLLAVFICYLIDSLKLFEHYGFSIFMKYWNFNHAYTNKTVDILKL-NKIQKGIVIG 236 (265)
Q Consensus 162 ~~~~~~~atsL~~~~---g-~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gk~V~v~~~-~~~~~G~~~g 236 (265)
+..+..++++|.... + ++|+++++.++++|...+..|.+++|+.++++|++++.++|++|++... ++.++|++.|
T Consensus 218 ~~~~~~~~~sL~~~~~~~~~~dr~~ll~~ll~~l~~~l~~~~~~g~~~~~~~w~~~~~~~gk~V~v~~~~~~~~~Gi~~G 297 (592)
T PRK13325 218 EVENAASVQSLFQTASRRGNADAAVLLETLLAELDAVLLQYARDGFAPFVAEYQAANRDHGKAVLLLRDGETVFEGTVKG 297 (592)
T ss_pred ccccCcChHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCeEEEEeCCCcEEEEEEEE
Confidence 432211267876542 2 8999999999999999999999999999999999999999999999754 5568999999
Q ss_pred ECCCceEEEEeCCceEEEEeeeEEEeec
Q psy15214 237 INKNGCLLLNTKFGKITISSGDVSLRLK 264 (265)
Q Consensus 237 I~~~G~L~l~~~~g~~~~~~Gev~l~~~ 264 (265)
||++|+|+|++++|.+.|++|||++|..
T Consensus 298 Id~~G~L~l~~~~g~~~~~sGEVslr~~ 325 (592)
T PRK13325 298 VDGQGVLHLETAEGKQTVVSGEISLRSD 325 (592)
T ss_pred ECCCCEEEEEECCCeEEEEEEeEEEeec
Confidence 9999999999999988999999999874
No 7
>PTZ00275 biotin-acetyl-CoA-carboxylase ligase; Provisional
Probab=100.00 E-value=1.4e-57 Score=410.20 Aligned_cols=235 Identities=24% Similarity=0.323 Sum_probs=204.0
Q ss_pred ceeEEEEcccccHHHHHHHHhhc----CC-C--CCCe-EEEeCcccCCCCCC------CCeeeeCCCCceEEEEeeecC-
Q psy15214 25 KIDIRTILSTNSTNSNLLSIANT----GL-L--FHPT-FLATKIQTAGRGRA------GRIWYSEPEITLTFSLAWKFK- 89 (265)
Q Consensus 25 ~~~i~~~~~v~STn~~a~~~~~~----~~-~--~~~~-vv~A~~QT~GrGR~------gr~W~Sp~g~~L~~S~~~~~~- 89 (265)
+..++++++|+|||++|+ ++. .. . ++++ +|+|++||+||||+ ||+|+||+| |||||++++++
T Consensus 16 ~~~~~~~~~v~STN~~a~--~~~~~~~~~g~~~~~~~~vv~A~~QT~GRGR~~~~~~~gR~W~Sp~G-~L~~S~~l~~~~ 92 (285)
T PTZ00275 16 NALRLHFDVLDSTQLYCK--RNMKRFIQNGKLQDDNMIIVSCNEQTNGIGTRDTKKNQDRIWLSEKG-NLFTTFVFLWNR 92 (285)
T ss_pred CcEEEEEcccCcHHHHHH--HhHHHHhhcCCcCCCCeEEEEECcccCCCCcCCCCCCCCCEEECCCC-ceEEEEEEecCC
Confidence 556999999999999999 643 22 2 4564 56799999999997 999999999 99999999754
Q ss_pred cCccccCchHHHHHHHHHHHHHHcCCccceeeCCcEEEcCeeEEEEEEEeeecC------CCccEEEEEeccccCCCCCC
Q psy15214 90 ISLKYLTSLPLVISIALSIALKKFGQKVQLKWPNDLLLNGNKFCGILIDTCIEK------KNNNWAIIGIGLNLGLPRIL 163 (265)
Q Consensus 90 ~~~~~~~~l~l~~alav~~aL~~~~~~~~iKWPNDI~~~~~Ki~GIL~E~~~~~------~~~~~~viGIGiNv~~~~~~ 163 (265)
.++..++.+++++|+||+++|+.++.+++||||||||+++|||||||+|..... ++...+|||||||||+++ .
T Consensus 93 ~~~~~~~~Lsl~~alAv~~~L~~~~~~~~IKWPNDI~~~~kKiaGILiE~~~~~~~~~~~~~~~~vViGIGINvn~~~-~ 171 (285)
T PTZ00275 93 NDIEKVKYLAQTCTVAISKTLEYFHLVTQIKWINDVLVNYKKIAGCLVHLYYLDDFPNLNSRYVCVMVGIGINVTLED-K 171 (285)
T ss_pred cCHhHhHHHHHHHHHHHHHHHHHhCCceeEECCCccccCCcEEEEEEEeeeeccccccccCceeEEEEEEEEecCCCC-C
Confidence 445677899999999999999999889999999999999999999999987532 344679999999999753 2
Q ss_pred CCCcc--ccccccccC---------CCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHhcccCCCEEEEEECCeEEEE
Q psy15214 164 SKKIN--IGNISELLN---------MEHEKLLAVFICYLIDSLKLFEHYGFSIFMKYWNFNHAYTNKTVDILKLNKIQKG 232 (265)
Q Consensus 164 ~~~~~--atsL~~~~g---------~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gk~V~v~~~~~~~~G 232 (265)
++.+. +|||..+++ .++++|++.++++|...+..|.+.+|+.++++|+++++++|+.|++..+++.++|
T Consensus 172 ~~~~~~~atSL~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~~~~~~g~~~i~~~~~~~~~~~g~~V~v~~~~~~~~G 251 (285)
T PTZ00275 172 HNLLNNNYTSIKKELQRDFNTPKSIPSVEQVTEKLIINLKAVINKLRKEGFSSFLDYITPRLLYKDKKVLIDQDNELIVG 251 (285)
T ss_pred cccccCCcccHHHHhCcccccccCCCCHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHhccCCCEEEEEeCCCEEEE
Confidence 22232 899987643 3688999999999999999999999999999999999999999999988888999
Q ss_pred EEEeECCCceEEEEeCCc-eEEEEeeeEEEee
Q psy15214 233 IVIGINKNGCLLLNTKFG-KITISSGDVSLRL 263 (265)
Q Consensus 233 ~~~gI~~~G~L~l~~~~g-~~~~~~Gev~l~~ 263 (265)
++.|||++|+|+|++++| .+.|++|||++..
T Consensus 252 ~~~gId~~G~L~i~~~~G~~~~~~sGev~~~~ 283 (285)
T PTZ00275 252 YLQGLLHDGSLLLLREKNKLVRVNTGHLRLKD 283 (285)
T ss_pred EEEEECCCCeEEEEeCCCCEEEEEEEEEEEcC
Confidence 999999999999999888 8899999999875
No 8
>PTZ00276 biotin/lipoate protein ligase; Provisional
Probab=100.00 E-value=1.4e-54 Score=383.21 Aligned_cols=222 Identities=23% Similarity=0.308 Sum_probs=181.1
Q ss_pred CceeEEEEcccccHHHHHHHHhhcCC-CCCCeEEEeCcccCCCCCCCCeeeeCCCCceEEEEeeecC-cCccccCchHHH
Q psy15214 24 TKIDIRTILSTNSTNSNLLSIANTGL-LFHPTFLATKIQTAGRGRAGRIWYSEPEITLTFSLAWKFK-ISLKYLTSLPLV 101 (265)
Q Consensus 24 ~~~~i~~~~~v~STn~~a~~~~~~~~-~~~~~vv~A~~QT~GrGR~gr~W~Sp~g~~L~~S~~~~~~-~~~~~~~~l~l~ 101 (265)
.+.+++++++|+|||++|+ +++.. ..++++|+|++||+||||+||+|+||+| |||||++++++ .+....+.++++
T Consensus 5 ~~~~i~~~~~v~STN~~ak--~~~~~~~~~~~vviA~~QT~GRGR~gR~W~Sp~g-~l~~S~~l~~~~~~~~~~~~lsl~ 81 (245)
T PTZ00276 5 VPPNIHFVGEVTSTMDVAR--TMLAAAGGKPFAVLAESQTAGRGTGGRTWTSPKG-NMYFTLCIPQKGVPPELVPVLPLI 81 (245)
T ss_pred CCceEEEEeCCCCHHHHHH--HHHhcCCCCCeEEEECCCCCCCCCCCCcccCCCC-CeEEEEEECCCccChhHhhHHHHH
Confidence 4567999999999999999 77654 4688999999999999999999999999 99999999765 455567889999
Q ss_pred HHHHHHHHHHHc--CCccceeeCCcEEEcCeeEEEEEEEeeecCCCccEEEEEeccccCCCCCCCCCc-ccccc---ccc
Q psy15214 102 ISIALSIALKKF--GQKVQLKWPNDLLLNGNKFCGILIDTCIEKKNNNWAIIGIGLNLGLPRILSKKI-NIGNI---SEL 175 (265)
Q Consensus 102 ~alav~~aL~~~--~~~~~iKWPNDI~~~~~Ki~GIL~E~~~~~~~~~~~viGIGiNv~~~~~~~~~~-~atsL---~~~ 175 (265)
+|+|++++|+++ +.+++||||||||+++||+||||+|... .++||||||||+..+..++.. .++++ ..+
T Consensus 82 ~alav~~al~~~~~~~~~~iKWPNDI~~~~kKiaGILiE~~~-----~~vvIGIGINv~~~~~~~~~~~~~~~l~sl~~~ 156 (245)
T PTZ00276 82 TGLACRAAIMEVLHGAAVHTKWPNDIIYAGKKIGGSLIESEG-----EYLIIGIGMNIEVAPPVTDAGRESTMVNEIAED 156 (245)
T ss_pred HHHHHHHHHHHhccCCceEEEcCCeeEECCcEEEEEEEcccC-----CEEEEEEEEeeCCCCCCCccccccccHHHHHHh
Confidence 999999999987 5699999999999999999999999764 289999999999876543322 26654 333
Q ss_pred cC---CCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH---HhcccCCCEEEEEECCeEEEEEEEeECCCceEEEEeCC
Q psy15214 176 LN---MEHEKLLAVFICYLIDSLKLFEHYGFSIFMKYWN---FNHAYTNKTVDILKLNKIQKGIVIGINKNGCLLLNTKF 249 (265)
Q Consensus 176 ~g---~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~gk~V~v~~~~~~~~G~~~gI~~~G~L~l~~~~ 249 (265)
.+ +++++|++.++++|.+.+..+. ..+..++++|. .+...+++. +..+++..+|++.|||++|+|+|++++
T Consensus 157 ~~~~~~~r~~l~~~ll~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~G~~~gId~~G~Lvv~~~~ 233 (245)
T PTZ00276 157 LGVKSVTPQDLAEAVWKHFFDICSDPE-LTREILIESFDAAMDKSLKLHKR--TPTGRDPEELTALSLNEWGHLIVRRPD 233 (245)
T ss_pred hCCCCCCHHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHhhhhccCeE--EEcCCcEEEEEEEEECCCCeEEEEECC
Confidence 23 8999999999999988775532 22357788776 555556664 334566678999999999999999999
Q ss_pred c-eEEEEe
Q psy15214 250 G-KITISS 256 (265)
Q Consensus 250 g-~~~~~~ 256 (265)
| ++.+..
T Consensus 234 G~~~~~~~ 241 (245)
T PTZ00276 234 GTEEDLMA 241 (245)
T ss_pred CCEEEEEh
Confidence 9 666654
No 9
>PRK08477 biotin--protein ligase; Provisional
Probab=100.00 E-value=3.1e-54 Score=371.97 Aligned_cols=198 Identities=27% Similarity=0.372 Sum_probs=173.5
Q ss_pred eEEEEcccccHHHHHHHHhhcCC--CCCCeEEEeCcccCCCCCCCCeeeeCCCCceEEEEeeecCcCccccC--chHHHH
Q psy15214 27 DIRTILSTNSTNSNLLSIANTGL--LFHPTFLATKIQTAGRGRAGRIWYSEPEITLTFSLAWKFKISLKYLT--SLPLVI 102 (265)
Q Consensus 27 ~i~~~~~v~STn~~a~~~~~~~~--~~~~~vv~A~~QT~GrGR~gr~W~Sp~g~~L~~S~~~~~~~~~~~~~--~l~l~~ 102 (265)
+++++++++|||++++ +++.. .+++++|+|++||+||||+||+|.||+| |||||++++++.++...+ .+++++
T Consensus 2 ~i~~~~~v~STn~~~~--~~~~~~~~~~~~vvvA~~QTaGRGR~gR~W~Sp~G-~L~~S~~l~~~~~~~~~~~~~lsl~~ 78 (211)
T PRK08477 2 EIRVFESLDSTQTYLI--EKIKNGELKAPFAIVAKEQTAGIGSRGNSWEGKKG-NLFFSFALKESDLPKDLPLQSSSIYF 78 (211)
T ss_pred eEEEecCCCCHHHHHH--HHHHcCCCCCCEEEEECccCCCCCCCCCcccCCCC-CeEEEeecCCCcchhhhhhHHHHHHH
Confidence 4889999999999999 87654 3789999999999999999999999999 999999999876555544 489999
Q ss_pred HHHHHHHHHHcCCccceeeCCcEEEcCeeEEEEEEEeeecCCCccEEEEEeccccCCCCCCCCCccccccccccCCCHHH
Q psy15214 103 SIALSIALKKFGQKVQLKWPNDLLLNGNKFCGILIDTCIEKKNNNWAIIGIGLNLGLPRILSKKINIGNISELLNMEHEK 182 (265)
Q Consensus 103 alav~~aL~~~~~~~~iKWPNDI~~~~~Ki~GIL~E~~~~~~~~~~~viGIGiNv~~~~~~~~~~~atsL~~~~g~~~~~ 182 (265)
|+|++++|++++.+++||||||||+++||+||||+|.... .+||||||||++.|+. ++++... +++++
T Consensus 79 ~~av~~~l~~~~~~~~iKWPNDI~~~~kKi~GIL~E~~~~-----~vviGiGiNv~~~p~~-----~~~l~~~--~~~~~ 146 (211)
T PRK08477 79 GFLLKEVLKELGSKVWLKWPNDLYLDDKKIGGVITNKIKN-----FIVCGIGLNLKFSPKN-----FACLDIE--ISDDL 146 (211)
T ss_pred HHHHHHHHHHhCCCeEEcCCCeeEECCcEEEEEEEeecCC-----eEEEEEEEeeCCCCCc-----cccccCc--CCHHH
Confidence 9999999999988999999999999999999999997642 7999999999975432 4555322 89999
Q ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHhcccCCCEEEEEECCeEEEEEEEeECCCceEEEE
Q psy15214 183 LLAVFICYLIDSLKLFEHYGFSIFMKYWNFNHAYTNKTVDILKLNKIQKGIVIGINKNGCLLLN 246 (265)
Q Consensus 183 l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gk~V~v~~~~~~~~G~~~gI~~~G~L~l~ 246 (265)
|++.++++|++.+. ...++++|+ .++..|+.|++..+++.++|++.|||++|+|+|+
T Consensus 147 ll~~l~~~~~~~~~------~~~~~~~~~-~~~~~~~~v~v~~~~~~~~g~a~~I~~~G~L~v~ 203 (211)
T PRK08477 147 LLEGFLQKIEKKIL------WKQIFSKYK-LEFEKSKSFSFHIDGKLVSLKDAELLEDGSILIN 203 (211)
T ss_pred HHHHHHHHHHHHHh------HHHHHHHHH-HHHHcCCEEEEEECCEEEEEEEeeECCCCeEEEC
Confidence 99999999998873 246778898 7789999999999999999999999999999995
No 10
>PRK05935 biotin--protein ligase; Provisional
Probab=100.00 E-value=4.7e-46 Score=316.49 Aligned_cols=166 Identities=28% Similarity=0.362 Sum_probs=139.0
Q ss_pred EEEEcccccHHHHHHHHhhcCC--CCCCeEEEeCcccCCCCCCCCeeeeCCCCceEEEEeeecCcCccccCchHHHHHHH
Q psy15214 28 IRTILSTNSTNSNLLSIANTGL--LFHPTFLATKIQTAGRGRAGRIWYSEPEITLTFSLAWKFKISLKYLTSLPLVISIA 105 (265)
Q Consensus 28 i~~~~~v~STn~~a~~~~~~~~--~~~~~vv~A~~QT~GrGR~gr~W~Sp~g~~L~~S~~~~~~~~~~~~~~l~l~~ala 105 (265)
.+++++++|||++|+ +++.. .+++++|+|++||+||||+||+|+||+| |||||++++++.+......+..++++|
T Consensus 5 ~~~~~~v~STN~~~~--~~~~~~~~~~~~vv~A~~QTaGRGR~GR~W~Sp~G-~L~~Si~l~~~~~~~~~~~~~~l~~~a 81 (190)
T PRK05935 5 YYEIAETPSTNTTAK--EGMHLWDPYALTVISTREQTAGKGKFGKSWHSSDQ-DLLASFCFFITVLNIDVSLLFRLGTEA 81 (190)
T ss_pred EEeCCCCCcHHHHHH--HHHhcCCCCCCEEEEECccCCCCCCCCCeeeCCCC-CeEEEEEEccCCCCcCHHHHHHHHHHH
Confidence 455689999999999 87644 3468999999999999999999999999 999999997654333344566667789
Q ss_pred HHHHHHHcCC-ccceeeCCcEEEcCeeEEEEEEEeeecCCCccEEEEEeccccCCCCCCCCCc-c-ccccccccC--CCH
Q psy15214 106 LSIALKKFGQ-KVQLKWPNDLLLNGNKFCGILIDTCIEKKNNNWAIIGIGLNLGLPRILSKKI-N-IGNISELLN--MEH 180 (265)
Q Consensus 106 v~~aL~~~~~-~~~iKWPNDI~~~~~Ki~GIL~E~~~~~~~~~~~viGIGiNv~~~~~~~~~~-~-atsL~~~~g--~~~ 180 (265)
+++++++++. +++||||||||+++||+||||+|...... ...+||||||||+++++..+++ . +|||+++.+ +++
T Consensus 82 v~~~l~~~~~~~~~iKWPNDI~~~~kKi~GILiE~~~~~~-~~~vVIGIGINv~~~~~~~~~~~~~atsL~~~~~~~~~~ 160 (190)
T PRK05935 82 VMRLGEDLGITEAVIKWPNDVLVHGEKLCGVLCETIPVKG-GLGVILGIGVNGNTTKDELLGIDQPATSLQELLGHPIDL 160 (190)
T ss_pred HHHHHHHhCCccccccCCCeEEECCcEEEEEEEeccccCC-CcEEEEEEeEecCCCchhccccCCCcccHHHhhCCCCCH
Confidence 9999999887 79999999999999999999999875543 3579999999999876543333 2 999998776 999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy15214 181 EKLLAVFICYLIDSLKL 197 (265)
Q Consensus 181 ~~l~~~l~~~l~~~~~~ 197 (265)
+++++.++++|.+.|..
T Consensus 161 ~~l~~~l~~~l~~~~~~ 177 (190)
T PRK05935 161 EEQRERLIKHIKHVLIQ 177 (190)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999888764
No 11
>KOG1536|consensus
Probab=100.00 E-value=2.8e-34 Score=268.73 Aligned_cols=232 Identities=22% Similarity=0.233 Sum_probs=188.2
Q ss_pred cccCCCCHHHHHhhhccCCCCCceeEEEEcccccHHHHHHHHhhcCCCC--CCeEEEeCcccCCCCCCCCeeeeCCCCce
Q psy15214 3 IYSHSLNTSRIKNLYYNYNTDTKIDIRTILSTNSTNSNLLSIANTGLLF--HPTFLATKIQTAGRGRAGRIWYSEPEITL 80 (265)
Q Consensus 3 ~~~~~l~~~~i~~~~~~~~~~~~~~i~~~~~v~STn~~a~~~~~~~~~~--~~~vv~A~~QT~GrGR~gr~W~Sp~g~~L 80 (265)
+.+.++|.+.+.+.+.+.. -+..+++-+.+.|||+.+- ....+.+ .+.+|+|..||+||||.|+.|.||.| .+
T Consensus 365 ~~s~nFdl~lY~k~i~tk~--~G~~ll~a~V~tST~~ild--~n~s~lpse~g~vvv~~~Q~sGRGRGgN~WlsP~G-~~ 439 (649)
T KOG1536|consen 365 DDSPNFDLELYFKSINTKR--FGRVLLWAPVLTSTMDILD--HNFSELPSEVGLVVVANIQTSGRGRGGNVWLSPKG-CA 439 (649)
T ss_pred cCCCCcCHHHHHHHhhhhc--cCceEEEEeecchHHHHHh--hhhhcCCcccceEEEEeEEeecccCCCCeeecCcc-eE
Confidence 4567899999998884422 2445999999999999998 6666644 89999999999999999999999999 89
Q ss_pred EEEEeeecCcCccc---cCchHHHHHHHHHHHHHHc----CCccceeeCCcEEEcC-eeEEEEEEEeeecCCCccEEEEE
Q psy15214 81 TFSLAWKFKISLKY---LTSLPLVISIALSIALKKF----GQKVQLKWPNDLLLNG-NKFCGILIDTCIEKKNNNWAIIG 152 (265)
Q Consensus 81 ~~S~~~~~~~~~~~---~~~l~l~~alav~~aL~~~----~~~~~iKWPNDI~~~~-~Ki~GIL~E~~~~~~~~~~~viG 152 (265)
++|+.+..+.-.+. ++..-.++.++++++++.. .++++||||||||+++ .||||||+.+....+. ..++||
T Consensus 440 ~~sf~ism~~ksr~~~~i~~~~~l~~~~~v~~~~~~pGy~dIpvrIKWPNDlY~~~~lKvgGiLv~st~r~n~-f~v~iG 518 (649)
T KOG1536|consen 440 MSSFTISMPLKSRVVPLIPFVQHLALVAVVEAVRYAPGYPDIPVRIKWPNDLYVNGYLKVGGILVTSTYRSNK-FNVSIG 518 (649)
T ss_pred eEEEEEEeecccccccchHHHHHHHHHHHHHHHhcCCCCCCCceeeecCccceeeeccccceEEEEeeecCce-EEEEEe
Confidence 99999976643233 3344445555666666654 2599999999999999 9999999999988665 589999
Q ss_pred eccccCCCCCCCCCccccccccc-------c-----CCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHhcccCCCE
Q psy15214 153 IGLNLGLPRILSKKINIGNISEL-------L-----NMEHEKLLAVFICYLIDSLKLFEHYGFSIFMKYWNFNHAYTNKT 220 (265)
Q Consensus 153 IGiNv~~~~~~~~~~~atsL~~~-------~-----g~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gk~ 220 (265)
+||||.+..+ .++|... . .+.+++|++++++.|+.++..|.++|++.++..|.+++.+-+++
T Consensus 519 CGiNVtN~~P------T~cLN~ll~~~n~e~~~~~l~~k~EkLiA~~~n~fe~~~k~f~d~G~~silp~YYeyWLHS~Q~ 592 (649)
T KOG1536|consen 519 CGINVTNDGP------TTCLNDLLDEMNEERNLLHLAIKAEKLIAAVFNKFEKYFKLFMDQGPKSILPLYYEYWLHSNQR 592 (649)
T ss_pred eeeEecCCCC------ceeHHHHHHhhchhhccccchhhHHHHHHHHHHHHHHHHHHHHhhCHHhHhHHHHHHHhccCcE
Confidence 9999997543 2333321 1 16799999999999999999999999999999999999999999
Q ss_pred EEEEECCeEEEEEEEeECCCceEEEEeC
Q psy15214 221 VDILKLNKIQKGIVIGINKNGCLLLNTK 248 (265)
Q Consensus 221 V~v~~~~~~~~G~~~gI~~~G~L~l~~~ 248 (265)
|.+.+.++. =++.|+|+.|.|+++..
T Consensus 593 V~L~d~~e~--vii~~~dD~G~L~~~~~ 618 (649)
T KOG1536|consen 593 VILEDKGEA--VIIGGTDDIGFLQVSGL 618 (649)
T ss_pred EeccCCCcc--eEEeeeecccceeeehh
Confidence 999887743 36888899999999743
No 12
>PF03099 BPL_LplA_LipB: Biotin/lipoate A/B protein ligase family This entry is just a subset of the Pfam family; InterPro: IPR004143 This domain is found in biotin protein ligase, lipoate-protein ligase A and B. Biotin is covalently attached at the active site of certain enzymes that transfer carbon dioxide from bicarbonate to organic acids to form cellular metabolites. Biotin protein ligase (BPL) is the enzyme responsible for attaching biotin to a specific lysine at the active site of biotin enzymes. Each organism probably has only one BPL. Biotin attachment is a two step reaction that results in the formation of an amide linkage between the carboxyl group of biotin and the epsilon-amino group of the modified lysine []. Lipoate-protein ligase A (LPLA) (octanoyltransferase) catalyses the formation of an amide linkage between lipoic acid and a specific lysine residue in lipoate dependent enzymes [].; GO: 0003824 catalytic activity, 0006464 protein modification process; PDB: 2ARU_A 2C8M_B 2C7I_A 3R07_A 2ARS_A 2ART_A 3FJP_A 3EFR_B 2EAY_B 3EFS_B ....
Probab=99.89 E-value=2e-23 Score=165.19 Aligned_cols=117 Identities=32% Similarity=0.416 Sum_probs=91.2
Q ss_pred EEcccccHHHHHHHHhhcCCCCCCeEEEeCcccCCCCCCCCeeeeCCCCceEEEEeeecCcC---ccccCchHHHHHHHH
Q psy15214 30 TILSTNSTNSNLLSIANTGLLFHPTFLATKIQTAGRGRAGRIWYSEPEITLTFSLAWKFKIS---LKYLTSLPLVISIAL 106 (265)
Q Consensus 30 ~~~~v~STn~~a~~~~~~~~~~~~~vv~A~~QT~GrGR~gr~W~Sp~g~~L~~S~~~~~~~~---~~~~~~l~l~~alav 106 (265)
++++++||+.++. ....+.+.+++|++||.|| +.|+||+| +|+||++++++.+ ......+...+++++
T Consensus 1 ~g~~~~st~~~~~----~~~~~~~~v~v~~rqtgG~----~~w~~p~g-~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (125)
T PF03099_consen 1 IGYFQDSTKEELN----QEELKEGGVPVARRQTGGR----RVWHSPPG-NLYFSLILPPDDPNFPPSDIPSYILLAALAV 71 (125)
T ss_dssp EETTBSHHHHHHH----HHHHHCTTEEEEEESSSSB----EEEEBTTT-EEEEEEEEETTTTTHHGGGHHHHHHHHHHHH
T ss_pred CcCeECHHHHHHH----HhcCccCCEEEEEEeeCCc----ceeeeCCc-EEEEEEEEccccccccchhhhHHHHHHHHHH
Confidence 4678999922222 1126788899999999998 99999999 9999999997652 234556678888888
Q ss_pred HHHHHH-----cCCccceeeCCcEEEcCeeEEEEEEEeeecCCCccEEEEEeccc
Q psy15214 107 SIALKK-----FGQKVQLKWPNDLLLNGNKFCGILIDTCIEKKNNNWAIIGIGLN 156 (265)
Q Consensus 107 ~~aL~~-----~~~~~~iKWPNDI~~~~~Ki~GIL~E~~~~~~~~~~~viGIGiN 156 (265)
+++|.. .+.++.+||||||++++|||||||+|.... .....++||||+|
T Consensus 72 ~~~l~~~~~~~~~~~~~~kw~nDi~~~~kKi~Gil~~~~~~-~~~~~~~igig~N 125 (125)
T PF03099_consen 72 LEALGEFGPGEPGIDCFIKWPNDIYVNGKKIAGILQERRRG-GILHHGSIGIGIN 125 (125)
T ss_dssp HHHHHHTTHTTTTSSEEEETTTEEEETTEEEEEEEEEEETT-EEEEEEEEESSEE
T ss_pred HHHhhhhccccCCCceEEeCCCCccCCCcEEEEEeEeeeCC-cEEEEEEEEEecC
Confidence 888842 356999999999999999999999998773 3334667777766
No 13
>PF02237 BPL_C: Biotin protein ligase C terminal domain; InterPro: IPR003142 This C-terminal domain has an SH3-like barrel fold, the function of which is unknown. It is found associated with prokaryotic bifunctional transcriptional repressors [] and eukaryotic enzymes involved in biotin utilization [, ]. In Escherichia coli the biotin operon repressor (BirA) is a bifunctional protein. BirA acts both as the acetyl-coA carboxylase biotin holoenzyme synthetase (6.3.4.15 from EC) and as the biotin operon repressor. DNA sequence analysis of mutations indicates that the helix-turn-helix DNA binding region is located at the N terminus while mutations affecting enzyme function, although mapping over a large region, are found mainly in the central part of the protein's primary sequence [].; GO: 0006464 protein modification process; PDB: 3RUX_A 2CGH_A 3L1A_B 3L2Z_A 1HXD_A 1BIB_A 2EWN_B 1BIA_A 2EJ9_A 3FJP_A ....
Probab=99.13 E-value=2.3e-10 Score=76.07 Aligned_cols=47 Identities=43% Similarity=0.525 Sum_probs=44.9
Q ss_pred cCCCEEEEEECCeEEEEEEEeECCCceEEEEeCCc-eEEEEeeeEEEe
Q psy15214 216 YTNKTVDILKLNKIQKGIVIGINKNGCLLLNTKFG-KITISSGDVSLR 262 (265)
Q Consensus 216 ~~gk~V~v~~~~~~~~G~~~gI~~~G~L~l~~~~g-~~~~~~Gev~l~ 262 (265)
++||+|++..+++.++|++.|||++|+|+|++++| .+++++|||++|
T Consensus 1 ~lG~~V~v~~~~~~~~G~~~gId~~G~L~v~~~~g~~~~i~sGdv~~r 48 (48)
T PF02237_consen 1 TLGQEVRVETGDGEIEGIAEGIDDDGALLVRTEDGSIRTISSGDVSLR 48 (48)
T ss_dssp STTSEEEEEETSCEEEEEEEEEETTSEEEEEETTEEEEEESSSEEEEE
T ss_pred CCCCEEEEEECCeEEEEEEEEECCCCEEEEEECCCCEEEEEEEEEEeC
Confidence 47999999999999999999999999999999999 899999999987
No 14
>PRK14348 lipoate-protein ligase B; Provisional
Probab=96.94 E-value=0.012 Score=51.43 Aligned_cols=123 Identities=16% Similarity=0.197 Sum_probs=81.3
Q ss_pred CCCCeeeeCCCCceEEEEeeecCcCccccCchHHHHHHHHHHHHHHcCCcc-ceeeCCcEEEc-----CeeEEEEEEEee
Q psy15214 67 RAGRIWYSEPEITLTFSLAWKFKISLKYLTSLPLVISIALSIALKKFGQKV-QLKWPNDLLLN-----GNKFCGILIDTC 140 (265)
Q Consensus 67 R~gr~W~Sp~g~~L~~S~~~~~~~~~~~~~~l~l~~alav~~aL~~~~~~~-~iKWPNDI~~~-----~~Ki~GIL~E~~ 140 (265)
|.|...+.-|| -|-.=.+++....-..+..+--..-=++.++|+.+|++. +.+..-.||++ ++|||.|=+-..
T Consensus 80 RGG~iTyHGPG-QlV~Ypil~L~~~~~~v~~yv~~lE~~vI~~l~~~gi~~~~~~~~~GVWv~~~~~~~~KIaaIGv~v~ 158 (221)
T PRK14348 80 RGGDITYHGPG-QLVCYPILNLEEFGLGLKEYVHLLEEAVIRVCASYGVVAGRLEKATGVWLEGDTSRARKICAIGVRSS 158 (221)
T ss_pred CCCceEEECCC-eEEEEEEEEccccCCCHHHHHHHHHHHHHHHHHHcCCceeecCCCCCEEecCCCCCCCcEEEEeEEec
Confidence 77777777788 565555555433111122222223346778999999854 67788899998 589998765543
Q ss_pred ecCCCccEEEEEeccccCCCCCCCC----C-c---cccccccccC--CCHHHHHHHHHHHHHHHH
Q psy15214 141 IEKKNNNWAIIGIGLNLGLPRILSK----K-I---NIGNISELLN--MEHEKLLAVFICYLIDSL 195 (265)
Q Consensus 141 ~~~~~~~~~viGIGiNv~~~~~~~~----~-~---~atsL~~~~g--~~~~~l~~~l~~~l~~~~ 195 (265)
. ..-.=|+.|||+..-..+. . + ..|||.++.| ++.+++.+.++++|.+.+
T Consensus 159 r-----~vT~HG~ALNv~~dL~~F~~IvPCGl~~~~vTSl~~~~g~~~~~~~v~~~l~~~f~~~~ 218 (221)
T PRK14348 159 H-----YVTMHGLALNVNTDLRYFSYIHPCGFIDKGVTSLQQELGHSIDMAEVKERLGRELLAAL 218 (221)
T ss_pred c-----ceeecceEEEecCChHHhccCccCCCCCCcEEeeHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 2 1234499999997544332 1 2 2899987766 899999999988887654
No 15
>PRK14342 lipoate-protein ligase B; Provisional
Probab=96.47 E-value=0.049 Score=47.33 Aligned_cols=123 Identities=17% Similarity=0.261 Sum_probs=78.0
Q ss_pred CCCCeeeeCCCCceEEEEeeecCcCccccCchHHHHHHHHHHHHHHcCCccceeeCC--cEEEcCeeEEEEEEEeeecCC
Q psy15214 67 RAGRIWYSEPEITLTFSLAWKFKISLKYLTSLPLVISIALSIALKKFGQKVQLKWPN--DLLLNGNKFCGILIDTCIEKK 144 (265)
Q Consensus 67 R~gr~W~Sp~g~~L~~S~~~~~~~~~~~~~~l~l~~alav~~aL~~~~~~~~iKWPN--DI~~~~~Ki~GIL~E~~~~~~ 144 (265)
|.|-..+.-|| -|-+=.+++.......+..+--..-=++.++|+++|++..-+ |. -||++++|+|-|=+-...
T Consensus 71 RGG~iTyHGPG-QLV~YpIl~L~~~~~~~~~yv~~lE~~vi~~l~~~gi~~~~~-~~~~GVWv~~~KIaaIGv~v~r--- 145 (213)
T PRK14342 71 RGGQVTYHGPG-QLVMYVLLDLKRLKLGVRQLVTAIEQTVINTLAEYGIEAHAK-PDAPGVYVDGKKIASLGLRIRR--- 145 (213)
T ss_pred CCCceEEECCC-eEEEEEEEEccccCCCHHHHHHHHHHHHHHHHHHcCCceeec-CCCCcCcccCCEEEEEEEeEec---
Confidence 66677777778 465544454432111121122222335678889998855443 33 678889999977666432
Q ss_pred CccEEEEEeccccCCCCCCCC----C-cc---ccccccccC-CCHHHHHHHHHHHHHHHHH
Q psy15214 145 NNNWAIIGIGLNLGLPRILSK----K-IN---IGNISELLN-MEHEKLLAVFICYLIDSLK 196 (265)
Q Consensus 145 ~~~~~viGIGiNv~~~~~~~~----~-~~---atsL~~~~g-~~~~~l~~~l~~~l~~~~~ 196 (265)
..-.=|+.|||+.+...+. . ++ .|||+++.. ++.+++...++++|.+.+.
T Consensus 146 --~vT~HG~AlNv~~dL~~F~~IvPCGl~~~~vTSl~~~~~~~~~~~v~~~~~~~f~~~f~ 204 (213)
T PRK14342 146 --GCSFHGLALNVNMDLSPFLRINPCGYAGLEMTQLSDLGGPATVDEVAPRLLAELLALLG 204 (213)
T ss_pred --ceeecceeEecCCCchhhCcEecCCCCCCcEeeHHHhCCCCCHHHHHHHHHHHHHHHhC
Confidence 2345599999998654442 2 22 899987644 8999999999988877663
No 16
>COG0095 LplA Lipoate-protein ligase A [Coenzyme metabolism]
Probab=96.32 E-value=0.0098 Score=52.80 Aligned_cols=139 Identities=19% Similarity=0.262 Sum_probs=84.5
Q ss_pred CCCeEEEeCcccCCCCCCCCeeeeCCCCceEEEEeeecCcCccccCchHHHHHHHHHHHHHHcCCc-cceeeCCcEEEcC
Q psy15214 51 FHPTFLATKIQTAGRGRAGRIWYSEPEITLTFSLAWKFKISLKYLTSLPLVISIALSIALKKFGQK-VQLKWPNDLLLNG 129 (265)
Q Consensus 51 ~~~~vv~A~~QT~GrGR~gr~W~Sp~g~~L~~S~~~~~~~~~~~~~~l~l~~alav~~aL~~~~~~-~~iKWPNDI~~~~ 129 (265)
+++ +-++.+.|.|. .=+-..| +|.+|++.+.+........+.-...-.+.++++++|++ ....=+|||.++|
T Consensus 63 ~~~-i~vvRR~sGGG-----aV~hd~g-~l~~S~i~~~~~~~~~~~~~~~~~~~~~~~~l~~lgv~~~~~~~~nDl~v~g 135 (248)
T COG0095 63 EDG-IPVVRRPSGGG-----AVFHDLG-NLNYSVITPDEGGLESYETLYKFLLQPVIDALRALGVEGAECPGRNDLVVDG 135 (248)
T ss_pred HcC-CcEEEEcCCCc-----eEEecCC-cEEEEEEECCCCccccHHHHHHHHHHHHHHHHHHcCCCeeccCCCcceeEcC
Confidence 455 66778888873 3345567 99999999876543334444556677889999999997 8888899999999
Q ss_pred eeEEEEEEEeeecCC-CccEEEEEeccc-----cCCCCC-----CCCCcc--ccccccccCCCHHHHHHHHHHHHHHHHH
Q psy15214 130 NKFCGILIDTCIEKK-NNNWAIIGIGLN-----LGLPRI-----LSKKIN--IGNISELLNMEHEKLLAVFICYLIDSLK 196 (265)
Q Consensus 130 ~Ki~GIL~E~~~~~~-~~~~~viGIGiN-----v~~~~~-----~~~~~~--atsL~~~~g~~~~~l~~~l~~~l~~~~~ 196 (265)
||++|+=-=.....- ....+..-+=+. ++.++. .+...+ .+++.+..+++.+++...+++.|.+.+.
T Consensus 136 kKisG~Aq~~~~~~~l~hgtll~~~d~~~l~~~l~~~~~k~~~k~~~s~~~rv~~l~~~~~~~~~e~~~~l~~~f~~~~~ 215 (248)
T COG0095 136 KKISGSAQRRTKGRILHHGTLLLDIDLELLARVLRVPKEKIKSKGIKSVRERVANLEELLKISVEEFLEALLEAFFKVLG 215 (248)
T ss_pred cEEeeHHHHhhCCcEEEEEEEEEeCCHHHHHHHhCCChhhhhhcccccHHHhCcchhhccCCCHHHHHHHHHHHHHHhhC
Confidence 999996221111000 000111111111 111100 000011 4555555338899999999998888764
No 17
>TIGR00214 lipB lipoate-protein ligase B. Involved in lipoate biosynthesis as the main determinant of the lipoyl-protein ligase activity required for lipoylation of enzymes such as alpha-ketoacid dehydrogenases. Involved in activation and re-activation (following denaturation) of lipoyl-protein ligases (calcium ion-dependant process).
Probab=96.32 E-value=0.075 Score=45.16 Aligned_cols=122 Identities=16% Similarity=0.239 Sum_probs=78.0
Q ss_pred CCCCeeeeCCCCceEEEEeeecCcCccccCchHHHHHHHHHHHHHHcCCccceeeCC--cEEEcCeeEEEEEEEeeecCC
Q psy15214 67 RAGRIWYSEPEITLTFSLAWKFKISLKYLTSLPLVISIALSIALKKFGQKVQLKWPN--DLLLNGNKFCGILIDTCIEKK 144 (265)
Q Consensus 67 R~gr~W~Sp~g~~L~~S~~~~~~~~~~~~~~l~l~~alav~~aL~~~~~~~~iKWPN--DI~~~~~Ki~GIL~E~~~~~~ 144 (265)
|.|-..+.-|| -|-+=.+++.......+..+--..--++.++|+++|++.. .-|. -||++++|||-|=+-...
T Consensus 51 RGG~iTyHGPG-QLV~YpIl~L~~~~~~v~~yv~~lE~~~I~~l~~~gi~a~-~~~~~~GVWv~~~KIasIGv~v~r--- 125 (184)
T TIGR00214 51 RGGQVTYHGPG-QQVMYVILDLKRFQLDVRWLVTQLEQTVIITLAELGIEGE-PIADATGVWVEGKKVASLGIRVRR--- 125 (184)
T ss_pred CCCeeEEECCC-eEEEEEEEEchhcCCCHHHHHHHHHHHHHHHHHHcCCceE-EcCCCCeEEecCCEEEEEEEEEec---
Confidence 77777777788 5655555554331111222222333467788999988543 2243 468889999977665432
Q ss_pred CccEEEEEeccccCCCCCCC----CC-cc---ccccccccC-CCHHHHHHHHHHHHHHHH
Q psy15214 145 NNNWAIIGIGLNLGLPRILS----KK-IN---IGNISELLN-MEHEKLLAVFICYLIDSL 195 (265)
Q Consensus 145 ~~~~~viGIGiNv~~~~~~~----~~-~~---atsL~~~~g-~~~~~l~~~l~~~l~~~~ 195 (265)
....=|+.|||+.+...+ |. ++ .|||.++.. ++.+++...++++|.+.+
T Consensus 126 --~vt~HG~ALNv~~dL~~F~~I~PCGl~~~~vTSl~~~~~~~~~~~v~~~~~~~f~~~f 183 (184)
T TIGR00214 126 --GCTFHGLALNINMDLSPFSHINPCGYAGREMGSLNQFLPGATVENVAPLLIKAFAELL 183 (184)
T ss_pred --cEeecceEEEcCCCchHhccEEcCCCCCCcEeeHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 234559999999764433 21 22 899987644 888898889888886654
No 18
>PRK14344 lipoate-protein ligase B; Provisional
Probab=96.16 E-value=0.11 Score=45.36 Aligned_cols=122 Identities=16% Similarity=0.144 Sum_probs=74.6
Q ss_pred CCCCeeeeCCCCceEEEEeeecCcCccccCchHHHHHHHHHHHHHHcCCccceeeC--CcEEEcCeeEEEEEEEeeecCC
Q psy15214 67 RAGRIWYSEPEITLTFSLAWKFKISLKYLTSLPLVISIALSIALKKFGQKVQLKWP--NDLLLNGNKFCGILIDTCIEKK 144 (265)
Q Consensus 67 R~gr~W~Sp~g~~L~~S~~~~~~~~~~~~~~l~l~~alav~~aL~~~~~~~~iKWP--NDI~~~~~Ki~GIL~E~~~~~~ 144 (265)
|.|...+.-|| -|-+=.+++.......+..+--..--++.++|+++|++...+ | =-||++++|||-|=+-...
T Consensus 89 RGG~iTyHGPG-QLV~YpIl~L~~~~~~v~~yv~~lE~~ii~~l~~~gi~~~~~-~~~~GVWv~~~KIaaIGv~v~r--- 163 (223)
T PRK14344 89 RGGEVTHHMPG-QLVTYLVLDLRRFNKDLNWYLRQLEQVLIDVLADLGIDGERL-DGLTGVWIGNKKVASIGIGCRR--- 163 (223)
T ss_pred CCceeeEECCC-cEEEEEEEEccccCCCHHHHHHHHHHHHHHHHHHcCCceeec-CCCCcEEcCCCeEEEEeEeEec---
Confidence 44455555566 454444444332111111222222346668888898755432 3 4578889999977666432
Q ss_pred CccEEEEEeccccCCCCCCCCC-----cc---ccccccccC-CCHHHHHHHHHHHHHHHH
Q psy15214 145 NNNWAIIGIGLNLGLPRILSKK-----IN---IGNISELLN-MEHEKLLAVFICYLIDSL 195 (265)
Q Consensus 145 ~~~~~viGIGiNv~~~~~~~~~-----~~---atsL~~~~g-~~~~~l~~~l~~~l~~~~ 195 (265)
....=|+.|||++.-..+.. ++ .|||+++.. ++.+++...++++|.+.+
T Consensus 164 --~vT~HG~ALNv~~dL~~F~~IvPCGl~~~~vTSl~~~~~~~~~~~v~~~l~~~f~~~f 221 (223)
T PRK14344 164 --WITQHGFSLNVDCDLEGFNKIVPCGLEGCQVGRLSDWIPGLNIKEVKPLLKKSLQERF 221 (223)
T ss_pred --ceeecceEEecCCCccccCcEEcCCCCCCcEeeHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 24456999999986544422 22 899987755 899999888888886654
No 19
>PRK14345 lipoate-protein ligase B; Provisional
Probab=95.53 E-value=0.23 Score=43.79 Aligned_cols=123 Identities=18% Similarity=0.161 Sum_probs=75.3
Q ss_pred CCCCeeeeCCCCceEEEEeeecCcCccccCchHHHHHHHHHHHHHHcCCccce-eeCCcEEEc------CeeEEEEEEEe
Q psy15214 67 RAGRIWYSEPEITLTFSLAWKFKISLKYLTSLPLVISIALSIALKKFGQKVQL-KWPNDLLLN------GNKFCGILIDT 139 (265)
Q Consensus 67 R~gr~W~Sp~g~~L~~S~~~~~~~~~~~~~~l~l~~alav~~aL~~~~~~~~i-KWPNDI~~~------~~Ki~GIL~E~ 139 (265)
|.|-..+.-|| -|-.=.++...... .+..+--..-=++.++|+++|++..- +=.=-||++ ++|||-|=+-.
T Consensus 77 RGG~iTyHGPG-QLV~YpIldL~~~~-~v~~yv~~LE~~vI~~l~~~gi~a~~~~~~~GVWv~~~~~~~~~KIaaIGv~v 154 (234)
T PRK14345 77 RGGKITWHGPG-QLVGYPIIKLAEPL-DVVDYVRRLEEALIAVCADLGLNAGRVDGRSGVWVPADGGRPDRKIAAIGIRV 154 (234)
T ss_pred CCCceeEeCCC-eEEEEEEEecCCCC-CHHHHHHHHHHHHHHHHHHcCCceeecCCCCeEEECCCCCCCcceEEEEEeee
Confidence 55555555567 45444444443211 12222222234677899999885432 211256776 79999776654
Q ss_pred eecCCCccEEEEEeccccCCCCCCCCC-----c---cccccccccC--CCHHHHHHHHHHHHHHHHH
Q psy15214 140 CIEKKNNNWAIIGIGLNLGLPRILSKK-----I---NIGNISELLN--MEHEKLLAVFICYLIDSLK 196 (265)
Q Consensus 140 ~~~~~~~~~~viGIGiNv~~~~~~~~~-----~---~atsL~~~~g--~~~~~l~~~l~~~l~~~~~ 196 (265)
.. ....=|+.|||+.+...+.. + ..|||+++.+ ++.+++...++++|.+.+.
T Consensus 155 ~r-----~vT~HG~ALNV~~DL~~F~~IvPCGl~~~~vTSl~~~~g~~~~~~~v~~~l~~~f~~~f~ 216 (234)
T PRK14345 155 SR-----GVTMHGFALNCDNDLAAFDAIVPCGISDAGVTTLSAELGRTVTVAEVVDPVAAALCDALD 216 (234)
T ss_pred cc-----ceeecceEEEeCCChHHhceEEeCCCCCCcEEehhHhhCCCCCHHHHHHHHHHHHHHHhC
Confidence 32 24456999999986544322 2 2899987766 8899999999988877664
No 20
>TIGR00545 lipoyltrans lipoyltransferase and lipoate-protein ligase. One member of this group of proteins is bovine lipoyltransferase, which transfers the lipoyl group from lipoyl-AMP to the specific Lys of lipoate-dependent enzymes. However, it does not first activate lipoic acid with ATP to create lipoyl-AMP and pyrophosphate. Another member of this group, lipoate-protein ligase A from E. coli, catalyzes both the activation and the transfer of lipoate. Homology between the two is full-length, except for the bovine mitochondrial targeting signal, but is strongest toward the N-terminus.
Probab=95.39 E-value=0.047 Score=50.40 Aligned_cols=123 Identities=15% Similarity=0.191 Sum_probs=72.1
Q ss_pred EeCcccCCCCCCCCeeeeCCCCceEEEEeeecCcCccccCchHHHHHHHHHHHHHHcCCccceeeCCcEEEcCeeEEEEE
Q psy15214 57 ATKIQTAGRGRAGRIWYSEPEITLTFSLAWKFKISLKYLTSLPLVISIALSIALKKFGQKVQLKWPNDLLLNGNKFCGIL 136 (265)
Q Consensus 57 ~A~~QT~GrGR~gr~W~Sp~g~~L~~S~~~~~~~~~~~~~~l~l~~alav~~aL~~~~~~~~iKWPNDI~~~~~Ki~GIL 136 (265)
++.+.|.| ..=+..+| +|.||++.+.+... ...+ -...=.++++|+++|+++.+.=+|||.++|||++|.=
T Consensus 67 vvRR~sGG-----GaVyhD~g-~l~~s~i~~~~~~~--~~~~-~~~~~~i~~aL~~lGi~a~~~~rnDl~v~gkKisGsA 137 (324)
T TIGR00545 67 LFRRFSGG-----GAVFHDLG-NICFSFITPKDGKE--FENA-KIFTRNVIKALNSLGVEAELSGRNDLVVDGRKISGSA 137 (324)
T ss_pred EEEECCCC-----ceEEEcCC-ceEEEEEEcCCccc--hhhH-HHHHHHHHHHHHHhCCCeEECCCceEEECCEEEEEEe
Confidence 33555544 33334457 89999998864211 1111 3344568899999999888777999999999999983
Q ss_pred EEeeecCCCccEEEEE--eccccCC--------CCCC-C-----CCcc--ccccccccC-CCHHHHHHHHHHHHHH
Q psy15214 137 IDTCIEKKNNNWAIIG--IGLNLGL--------PRIL-S-----KKIN--IGNISELLN-MEHEKLLAVFICYLID 193 (265)
Q Consensus 137 ~E~~~~~~~~~~~viG--IGiNv~~--------~~~~-~-----~~~~--atsL~~~~g-~~~~~l~~~l~~~l~~ 193 (265)
..... + .++.. +=+|.+. ++.. . .... .++|.+..+ ++.+++...++++|..
T Consensus 138 -q~~~~-~---~~l~HGtlL~~~d~~~l~~~L~~~~~k~~skgv~sv~~rv~nl~~~l~~~~~e~~~~~l~~~f~~ 208 (324)
T TIGR00545 138 -YYITK-D---RGFHHGTLLFDADLSKLAKYLNVDKTKIESKGITSVRSRVVNVKEYLPNITTEQFLEEMTQAFFT 208 (324)
T ss_pred -eeeeC-C---EEEEEEEEEccCCHHHHHHhcCCChhhhHhhcccchhhhcccHHHhCCCCCHHHHHHHHHHHHHh
Confidence 22221 1 21111 1122211 1100 0 0111 566766655 7888888888877765
No 21
>PRK14343 lipoate-protein ligase B; Provisional
Probab=95.22 E-value=0.32 Score=42.86 Aligned_cols=124 Identities=16% Similarity=0.166 Sum_probs=76.1
Q ss_pred CCCCeeeeCCCCceEEEEeeecCcCccccCchHHHHHHHHHHHHHHcCCcccee-eCCcEEEc-----CeeEEEEEEEee
Q psy15214 67 RAGRIWYSEPEITLTFSLAWKFKISLKYLTSLPLVISIALSIALKKFGQKVQLK-WPNDLLLN-----GNKFCGILIDTC 140 (265)
Q Consensus 67 R~gr~W~Sp~g~~L~~S~~~~~~~~~~~~~~l~l~~alav~~aL~~~~~~~~iK-WPNDI~~~-----~~Ki~GIL~E~~ 140 (265)
|.|...+.-|| -|-.=.+++..........+--..-=++.++|+++|++..-+ =.=-||++ ++|||-|=+-..
T Consensus 81 RGG~iTyHGPG-QLV~YpIl~L~~~~~~v~~yv~~lE~~vI~~l~~~gi~~~~~~~~~GVwv~~~~~~~~KIaaIGv~v~ 159 (235)
T PRK14343 81 RGGQITYHGPG-QVVAYLLLDLRRRKLMVRELVTRIEQAVIDTLAAYNLASERKAGAPGIYVASGPHQGAKIAALGLKIR 159 (235)
T ss_pred CCCceeEeCCC-eEEEEEEEEccccCCCHHHHHHHHHHHHHHHHHHcCCceeecCCCCeEEEeCCCCCCCeEEEEeeeee
Confidence 55666666677 465555555433111122222223336778899998855433 12356776 899997766543
Q ss_pred ecCCCccEEEEEeccccCCCCCCCCC-----c---cccccccccC-CCHHHHHHHHHHHHHHHHH
Q psy15214 141 IEKKNNNWAIIGIGLNLGLPRILSKK-----I---NIGNISELLN-MEHEKLLAVFICYLIDSLK 196 (265)
Q Consensus 141 ~~~~~~~~~viGIGiNv~~~~~~~~~-----~---~atsL~~~~g-~~~~~l~~~l~~~l~~~~~ 196 (265)
. ..-.=|+.|||++....+.. + ..|||.+... ++.+++...++++|.+.+.
T Consensus 160 r-----~vT~HG~ALNv~~DL~~F~~I~PCGl~~~~vTSL~~lg~~~~~~~v~~~l~~~f~~~f~ 219 (235)
T PRK14343 160 N-----GCSYHGLSLNVKMDLRPFLAINPCGYAGLETVDMASLGVAADWADVAQTLARRLIANLD 219 (235)
T ss_pred c-----ceeecccEEEeCCCchhhCcEECCCCCCCcEeeHHHhCCCCCHHHHHHHHHHHHHHHhC
Confidence 2 23455999999986544422 2 2899965432 8999999999888877663
No 22
>COG0321 LipB Lipoate-protein ligase B [Coenzyme metabolism]
Probab=95.01 E-value=0.51 Score=40.98 Aligned_cols=123 Identities=14% Similarity=0.176 Sum_probs=75.4
Q ss_pred CCCC-eeeeCCCCceEEEEeeecCcCccccCchHHHHHHHHHHHHHHcCCcccee-eCCcEEEcC-eeEEEEEEEeeecC
Q psy15214 67 RAGR-IWYSEPEITLTFSLAWKFKISLKYLTSLPLVISIALSIALKKFGQKVQLK-WPNDLLLNG-NKFCGILIDTCIEK 143 (265)
Q Consensus 67 R~gr-~W~Sp~g~~L~~S~~~~~~~~~~~~~~l~l~~alav~~aL~~~~~~~~iK-WPNDI~~~~-~Ki~GIL~E~~~~~ 143 (265)
|.|. +|+- || -+-.=.++....+-.....+--..==++.++|..++++..-| ==--+|+++ +|||-|=+-...
T Consensus 77 RGGqvTyHG-PG-Q~V~Y~ildLkr~~~~vr~~V~~LEqavI~tLa~~~i~~~~~~~~~GVwV~~~~KIAaiGirirr-- 152 (221)
T COG0321 77 RGGQVTYHG-PG-QLVAYPILDLKRPKLDVREYVRALEQAVINTLAEYGIEAERRPDRPGVWVEEERKIAAIGIRIRR-- 152 (221)
T ss_pred CCceeEEeC-CC-cEEEEEEEecccccccHHHHHHHHHHHHHHHHHHcCCcccccCCCCeEEecCCceEEEEEEEEec--
Confidence 4444 4444 46 344444454433211122222233347889999998732221 112477775 999977666543
Q ss_pred CCccEEEEEeccccCCCCCCCCC-----c---cccccccccC-CCHHHHHHHHHHHHHHHHH
Q psy15214 144 KNNNWAIIGIGLNLGLPRILSKK-----I---NIGNISELLN-MEHEKLLAVFICYLIDSLK 196 (265)
Q Consensus 144 ~~~~~~viGIGiNv~~~~~~~~~-----~---~atsL~~~~g-~~~~~l~~~l~~~l~~~~~ 196 (265)
....=|+.|||++....+.. + ..|||++... ++.+++-..+.++|.+.+.
T Consensus 153 ---~vs~HGlALNv~~DL~~F~~I~PCG~~~~~~tsl~d~~~~v~~~~V~~~l~~~~~~~l~ 211 (221)
T COG0321 153 ---GVTFHGLALNVNMDLSPFNRIVPCGYAGMEVTSLSDLGPPVTVDEVAKALVAAFAKLLG 211 (221)
T ss_pred ---ccceeeeEEeccCCchhccceeccccCCCceeEHHHhCCCCcHHHHHHHHHHHHHHHhC
Confidence 24556999999987665532 2 2799998866 8899998888888877664
No 23
>PRK14349 lipoate-protein ligase B; Provisional
Probab=94.90 E-value=0.59 Score=40.79 Aligned_cols=122 Identities=14% Similarity=0.186 Sum_probs=76.4
Q ss_pred CCCCeeeeCCCCceEEEEeeecCcCccccCchHHHHHHHHHHHHHHcCCc-cceeeCC--cEEEc-----CeeEEEEEEE
Q psy15214 67 RAGRIWYSEPEITLTFSLAWKFKISLKYLTSLPLVISIALSIALKKFGQK-VQLKWPN--DLLLN-----GNKFCGILID 138 (265)
Q Consensus 67 R~gr~W~Sp~g~~L~~S~~~~~~~~~~~~~~l~l~~alav~~aL~~~~~~-~~iKWPN--DI~~~-----~~Ki~GIL~E 138 (265)
|.|...+.-|| -|-.=.+++....-..+..+--..--++.++|+++|++ ..-+ |. -+|++ ++|||-|=+-
T Consensus 66 RGG~iTyHGPG-QLV~YpIldL~~~~~~vr~yv~~LE~~~I~~l~~~gi~~a~~~-~~~~GVWv~~~~~~~~KIaaiGv~ 143 (220)
T PRK14349 66 RGGQVTYHGPG-QVLAYTLFDLRRAGLYVREYVDMLEQATLATLRELGLEQACRK-PGAPGIYVPQPGGELAKIAALGVK 143 (220)
T ss_pred CCcceEEeCCC-cEEEEEEEEcccCCCCHHHHHHHHHHHHHHHHHHhCCcceeec-CCCCcEEeCCCCCCCceEEEEeeE
Confidence 66777777778 56555555544321112222222223567889999886 4222 22 46776 4899977666
Q ss_pred eeecCCCccEEEEEeccccCCCCCCCCC-----cc---ccccccccC--CCHHHHHHHHHHHHHHHHH
Q psy15214 139 TCIEKKNNNWAIIGIGLNLGLPRILSKK-----IN---IGNISELLN--MEHEKLLAVFICYLIDSLK 196 (265)
Q Consensus 139 ~~~~~~~~~~~viGIGiNv~~~~~~~~~-----~~---atsL~~~~g--~~~~~l~~~l~~~l~~~~~ 196 (265)
... ....=|+.|||++.-..+.. ++ .|||.+. | ++.+++...++++|...+.
T Consensus 144 v~r-----~vT~HG~ALNv~~DL~~F~~IvPCGl~~~~vTSl~~~-g~~~~~~~v~~~l~~~f~~~f~ 205 (220)
T PRK14349 144 VRN-----GYAYHGLALNIDMDLSPFLGINPCGYEGLRTVDLAAC-GVRTSVERAGELLAAQLARAHG 205 (220)
T ss_pred Eec-----ceeecceeEEecCCchhhCcEEcCCCCCCcEeeHHHh-CCCCCHHHHHHHHHHHHHHHhC
Confidence 432 24556999999986544422 22 8999764 5 8999999999988877663
No 24
>PRK14341 lipoate-protein ligase B; Provisional
Probab=94.14 E-value=0.88 Score=39.56 Aligned_cols=87 Identities=11% Similarity=0.082 Sum_probs=59.8
Q ss_pred HHHHHHHHHHcCCccceeeCC--cEEEcC--------eeEEEEEEEeeecCCCccEEEEEeccccCCCCCCCCC-----c
Q psy15214 103 SIALSIALKKFGQKVQLKWPN--DLLLNG--------NKFCGILIDTCIEKKNNNWAIIGIGLNLGLPRILSKK-----I 167 (265)
Q Consensus 103 alav~~aL~~~~~~~~iKWPN--DI~~~~--------~Ki~GIL~E~~~~~~~~~~~viGIGiNv~~~~~~~~~-----~ 167 (265)
-=++.++|+.+|++.. .-|+ .||+++ +|||-|=+-... ....=|+.||+++.-..+.. +
T Consensus 106 E~~iI~~l~~~gi~~~-~~~~~~GVWv~~~~~~~~~~~KIaaIGv~v~r-----~vT~HG~ALNv~~dL~~F~~IvPCGl 179 (213)
T PRK14341 106 EEWIIATLAAFNIRGE-RREDRVGVWVRRPDKGSGAEDKIAAIGVRLRR-----WVSFHGISINVEPDLSHFSGIVPCGI 179 (213)
T ss_pred HHHHHHHHHHhCCceE-EcCCCCeEEecCccCCCCCCCcEEEEeeeEec-----ceeccceEEEecCChhhhCcEecCCC
Confidence 3456688899998543 2366 788874 799977665432 23455999999986544322 2
Q ss_pred ---cccccccccC-CCHHHHHHHHHHHHHHHH
Q psy15214 168 ---NIGNISELLN-MEHEKLLAVFICYLIDSL 195 (265)
Q Consensus 168 ---~atsL~~~~g-~~~~~l~~~l~~~l~~~~ 195 (265)
..|||.+... ++.+++...++++|.+.+
T Consensus 180 ~~~~vTSl~~~g~~~~~~~v~~~l~~~f~~~f 211 (213)
T PRK14341 180 SEHGVTSLVDLGLPVTMDDVDAALKKAFEKVF 211 (213)
T ss_pred CCCcEeeHHHhCCCCCHHHHHHHHHHHHHHHh
Confidence 2899987422 889999988888887654
No 25
>PF04017 DUF366: Domain of unknown function (DUF366); InterPro: IPR007162 This is an archaeal family of unknown function.; PDB: 2DDZ_E.
Probab=93.93 E-value=1.1 Score=37.76 Aligned_cols=103 Identities=17% Similarity=0.232 Sum_probs=55.5
Q ss_pred EEEEeeecC-c-CccccCchHHHHHHHHHHHHHHcCCccceeeCCcEEEcCeeEEEEEEEeeecCCCccEEEEEeccccC
Q psy15214 81 TFSLAWKFK-I-SLKYLTSLPLVISIALSIALKKFGQKVQLKWPNDLLLNGNKFCGILIDTCIEKKNNNWAIIGIGLNLG 158 (265)
Q Consensus 81 ~~S~~~~~~-~-~~~~~~~l~l~~alav~~aL~~~~~~~~iKWPNDI~~~~~Ki~GIL~E~~~~~~~~~~~viGIGiNv~ 158 (265)
++-+++.-+ . .+..+....=+...-+++.|+.+|.++ .+=-.|||++++|+. +=+-+.. +...-|=+||||.
T Consensus 64 mlhFIvEhFD~~dl~~~~~rQRLlv~i~kE~L~~~gv~~-~R~GDDLy~~~~KLS-VSIAt~s----~vS~kIH~GiNV~ 137 (183)
T PF04017_consen 64 MLHFIVEHFDSPDLKLAYLRQRLLVAIIKEVLEEYGVKL-RREGDDLYVNGRKLS-VSIATAS----PVSTKIHFGINVS 137 (183)
T ss_dssp EEEEEEEE-S---HHHHHHHHHHHHHHHHHHHHTTT--E-EEETTEEEETTEE-E-EEEEEEE----TTEEEEEEEEESS
T ss_pred ceEEEEeeCCCCcHHHHHHHHHHHHHHHHHHHHhcCCce-eecccceeECCCEEE-EEEEecC----cchheEEEeEeec
Confidence 455666432 2 222222222234455688999998875 445899999999997 2222222 2467899999999
Q ss_pred CCCCCCCCccccccccccC-CCHHHHHHHHHHHHHH
Q psy15214 159 LPRILSKKINIGNISELLN-MEHEKLLAVFICYLID 193 (265)
Q Consensus 159 ~~~~~~~~~~atsL~~~~g-~~~~~l~~~l~~~l~~ 193 (265)
... .| +++.+|.+. | -+.+++++.+...+..
T Consensus 138 ~~g--~p-V~aigL~dl-gi~~~~~~~~~i~~~y~~ 169 (183)
T PF04017_consen 138 SEG--TP-VPAIGLEDL-GIEDIDELMERIAKRYVE 169 (183)
T ss_dssp -TT-----S-B--TTTT-T--HH-HHHHHHHHHHHH
T ss_pred ccC--cc-ccccCHHHc-CCccHHHHHHHHHHHHHH
Confidence 742 23 558888884 7 3344677766654433
No 26
>PRK03822 lplA lipoate-protein ligase A; Provisional
Probab=93.23 E-value=0.31 Score=45.35 Aligned_cols=118 Identities=14% Similarity=0.193 Sum_probs=68.4
Q ss_pred CeeeeCCCCceEEEEeeecCcCccccCchHHHHHHHHHHHHHHcCCccceeeCCcEEEc----CeeEEEEEEEeeecCCC
Q psy15214 70 RIWYSEPEITLTFSLAWKFKISLKYLTSLPLVISIALSIALKKFGQKVQLKWPNDLLLN----GNKFCGILIDTCIEKKN 145 (265)
Q Consensus 70 r~W~Sp~g~~L~~S~~~~~~~~~~~~~~l~l~~alav~~aL~~~~~~~~iKWPNDI~~~----~~Ki~GIL~E~~~~~~~ 145 (265)
+.=+...| ++.||++.+.+. .. ... ..-.|+++|+++|+++.+.=.|||.++ |+|++|-=-- ...+.-
T Consensus 76 GAVyhD~G-nl~~s~i~~~~~----~~-~~~-~~~~ii~aL~~lGi~a~~~~rnDi~v~~~~g~kKisGsAq~-~~~~~~ 147 (338)
T PRK03822 76 GAVFHDLG-NTCFTFMAGKPE----YD-KTI-STSIVLNALNSLGVSAEASGRNDLVVKTAEGDRKVSGSAYR-ETKDRG 147 (338)
T ss_pred ceEEEcCC-CcEEEEEeCCCc----cC-HHH-HHHHHHHHHHHcCCceeECCCccEEEecCCCCcEEEEEeee-eeCCeE
Confidence 33344457 899999876321 11 111 234688999999999999989999995 6999995221 111100
Q ss_pred --ccEEEEEeccc-----cCCCCCCC-----CCcc--ccccccccC-CCHHHHHHHHHHHHHHHH
Q psy15214 146 --NNWAIIGIGLN-----LGLPRILS-----KKIN--IGNISELLN-MEHEKLLAVFICYLIDSL 195 (265)
Q Consensus 146 --~~~~viGIGiN-----v~~~~~~~-----~~~~--atsL~~~~g-~~~~~l~~~l~~~l~~~~ 195 (265)
...+.+-.-+. ++.++... ..++ .|+|.+..+ ++.+++.+.++++|.+.+
T Consensus 148 l~HGTlL~~~d~~~l~~~L~~~~~k~~skgv~Sv~srVtnl~~~~~~~~~e~~~~~l~~~f~~~~ 212 (338)
T PRK03822 148 FHHGTLLLNADLSRLANYLNPDKKKLQAKGITSVRSRVTNLTELLPGITHEQVCEAITEAFFAHY 212 (338)
T ss_pred EEEEEEEecCCHHHHHHHhCCChhhhhhccccchHhhhccHHHhCCCCCHHHHHHHHHHHHHHHh
Confidence 00122221111 11111100 0111 677777665 889999999998887765
No 27
>COG2029 Uncharacterized conserved protein [Function unknown]
Probab=92.26 E-value=1.7 Score=36.13 Aligned_cols=85 Identities=14% Similarity=0.216 Sum_probs=56.9
Q ss_pred HHHHHHHHcCCccceeeCCcEEEcCeeEEEEEEEeeecCCCccEEEEEeccccCCCCCCCCCccccccccccC-CCHHHH
Q psy15214 105 ALSIALKKFGQKVQLKWPNDLLLNGNKFCGILIDTCIEKKNNNWAIIGIGLNLGLPRILSKKINIGNISELLN-MEHEKL 183 (265)
Q Consensus 105 av~~aL~~~~~~~~iKWPNDI~~~~~Ki~GIL~E~~~~~~~~~~~viGIGiNv~~~~~~~~~~~atsL~~~~g-~~~~~l 183 (265)
-+.+.|.++|..+.=. -.|+|++|+|+.=-..-.. ....-|=+||||... . .|+.++.+|.+. | .+..++
T Consensus 93 i~~E~l~~~gv~~~Re-GDDly~~grKLtVsIat~s-----~vs~kiHlGiNV~t~-g-~p~V~~igL~dl-g~~Di~~~ 163 (189)
T COG2029 93 ILKEVLEKLGVDLSRE-GDDLYVEGRKLTVSIATVS-----PVSSKIHLGINVKTE-G-VPDVDAIGLEDL-GYGDILEF 163 (189)
T ss_pred HHHHHHHHhCCccccc-CCceeecCcEEEEEEEecC-----CcceeEEEeEeeecc-c-CCCCCccccccc-CCCCHHHH
Confidence 3457777888655433 6899999999962222211 135668899999874 2 245668888776 6 788888
Q ss_pred HHHHHHHHHHHHHHH
Q psy15214 184 LAVFICYLIDSLKLF 198 (265)
Q Consensus 184 ~~~l~~~l~~~~~~~ 198 (265)
++.+..++.+-++..
T Consensus 164 m~~va~~yv~Eie~i 178 (189)
T COG2029 164 MERVAVAYVREIEKI 178 (189)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888877665555443
No 28
>PF01423 LSM: LSM domain ; InterPro: IPR001163 This family is found in Lsm (like-Sm) proteins and in bacterial Lsm-related Hfq proteins. In each case, the domain adopts a core structure consisting of an open beta-barrel with an SH3-like topology. Lsm (like-Sm) proteins have diverse functions, and are thought to be important modulators of RNA biogenesis and function [, ]. The Sm proteins form part of specific small nuclear ribonucleoproteins (snRNPs) that are involved in the processing of pre-mRNAs to mature mRNAs, and are a major component of the eukaryotic spliceosome. Most snRNPs consist of seven Sm proteins (B/B', D1, D2, D3, E, F and G) arranged in a ring on a uridine-rich sequence (Sm site), plus a small nuclear RNA (snRNA) (either U1, U2, U5 or U4/6) []. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker []. In other snRNPs, certain Sm proteins are replaced with different Lsm proteins, such as with U7 snRNPs, in which the D1 and D2 Sm proteins are replaced with U7-specific Lsm10 and Lsm11 proteins, where Lsm11 plays a role in histone U7-specific RNA processing []. Lsm proteins are also found in archaebacteria, which do not have any splicing apparatus suggesting a more general role for Lsm proteins. The pleiotropic translational regulator Hfq (host factor Q) is a bacterial Lsm-like protein, which modulates the structure of numerous RNA molecules by binding preferentially to A/U-rich sequences in RNA []. Hfq forms an Lsm-like fold, however, unlike the heptameric Sm proteins, Hfq forms a homo-hexameric ring.; PDB: 1D3B_K 2Y9D_D 2Y9A_D 2Y9C_R 3VRI_C 2Y9B_K 3QUI_D 3M4G_H 3INZ_E 1U1S_C ....
Probab=91.93 E-value=1.3 Score=30.70 Aligned_cols=49 Identities=18% Similarity=0.131 Sum_probs=38.2
Q ss_pred ccCCCEEEEEEC-CeEEEEEEEeECCCceEEEEeCCc----e-EEEEeeeEEEee
Q psy15214 215 AYTNKTVDILKL-NKIQKGIVIGINKNGCLLLNTKFG----K-ITISSGDVSLRL 263 (265)
Q Consensus 215 ~~~gk~V~v~~~-~~~~~G~~~gI~~~G~L~l~~~~g----~-~~~~~Gev~l~~ 263 (265)
.+.|++|.+... +..++|++.++|+...+.+.+... . ...+-|.+.+|.
T Consensus 5 ~~~g~~V~V~l~~g~~~~G~L~~~D~~~Nl~L~~~~~~~~~~~~~~~~~~~~irG 59 (67)
T PF01423_consen 5 KLIGKRVRVELKNGRTYRGTLVSFDQFMNLVLSDVTETIKNGPEKRSLGLVFIRG 59 (67)
T ss_dssp HTTTSEEEEEETTSEEEEEEEEEEETTEEEEEEEEEEEETTESEEEEEEEEEEEG
T ss_pred HhCCcEEEEEEeCCEEEEEEEEEeechheEEeeeEEEEECCCCcEeECcEEEEEC
Confidence 467999999987 667999999999999999975432 1 555667777764
No 29
>PRK14347 lipoate-protein ligase B; Provisional
Probab=91.35 E-value=7 Score=33.89 Aligned_cols=86 Identities=12% Similarity=0.051 Sum_probs=57.0
Q ss_pred HHHHHHHHHcCCcccee-eCCcEEEc-----CeeEEEEEEEeeecCCCccEEEEEeccccCCCCCCCCC-----cc---c
Q psy15214 104 IALSIALKKFGQKVQLK-WPNDLLLN-----GNKFCGILIDTCIEKKNNNWAIIGIGLNLGLPRILSKK-----IN---I 169 (265)
Q Consensus 104 lav~~aL~~~~~~~~iK-WPNDI~~~-----~~Ki~GIL~E~~~~~~~~~~~viGIGiNv~~~~~~~~~-----~~---a 169 (265)
-++.++|+.+|++..-+ =.=-||++ ++|||-|=+-... ....=|+.||++..-..+.. ++ .
T Consensus 107 ~~ii~~l~~~gi~~~~~~~~~GVWv~~~~~~~~KIaaiGv~v~r-----~vT~HG~AlNv~~dL~~F~~IvPCGl~~~~v 181 (209)
T PRK14347 107 EWIINSLNYFGIKAYIIKDKVGIWVKVRKDEFAKIAAIGVRVRK-----WVTYHGVAINISTDLSKFSGIIPCGLENSLV 181 (209)
T ss_pred HHHHHHHHHcCCceEEcCCCCEEEEcCCCCCCceEEEEeEEEec-----ceeecceEEEeCCCccccCcEECCCCCCCcE
Confidence 36668888898754332 11234564 6899977666432 23456999999986554432 22 8
Q ss_pred cccccccC-CCHHHHHHHHHHHHHHH
Q psy15214 170 GNISELLN-MEHEKLLAVFICYLIDS 194 (265)
Q Consensus 170 tsL~~~~g-~~~~~l~~~l~~~l~~~ 194 (265)
|||.+... ++.+++...++++|.+.
T Consensus 182 TSl~~~g~~~~~~~v~~~l~~~f~~~ 207 (209)
T PRK14347 182 TSLNQLGIHVEMSEFDKIIQTEFNKI 207 (209)
T ss_pred eeHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 99987533 88888888888888654
No 30
>PRK14061 unknown domain/lipoate-protein ligase A fusion protein; Provisional
Probab=91.27 E-value=0.82 Score=45.27 Aligned_cols=138 Identities=15% Similarity=0.194 Sum_probs=78.9
Q ss_pred CCCeEEEeCcccCC-----------------CCCCCCeeeeCCCCceEEEEeeecCcCccccCchHHHHHHHHHHHHHHc
Q psy15214 51 FHPTFLATKIQTAG-----------------RGRAGRIWYSEPEITLTFSLAWKFKISLKYLTSLPLVISIALSIALKKF 113 (265)
Q Consensus 51 ~~~~vv~A~~QT~G-----------------rGR~gr~W~Sp~g~~L~~S~~~~~~~~~~~~~~l~l~~alav~~aL~~~ 113 (265)
+.|++++..+|..- |=..|..=+...| |+.||++.+.+. .. .. ...-.+++||+++
T Consensus 264 n~ptVvIGrnQN~~~EVNl~~~~~~gI~vVRR~SGGGAVYHD~G-NlnfSfi~~~~~----~~-~~-~~~~~Ii~aL~~L 336 (562)
T PRK14061 264 NADTVVIGRAQNPWKECNTRRMEEDNVRLARRSSGGGAVFHDLG-NTCFTFMAGKPE----YD-KT-ISTSIVLNALNAL 336 (562)
T ss_pred CCCEEEECCCCCchhhhCHHHHHhcCCcEEEECCCCcEEEEcCC-ceEEEEEeCCcc----cc-hH-HHHHHHHHHHHHc
Confidence 34677776666543 2233455555667 899999875321 11 11 1135678999999
Q ss_pred CCccceeeCCcEEE----cCeeEEEEEEEeeecCC-CccEEEEEeccc-----cCCCCCCC-----CCcc--cccccccc
Q psy15214 114 GQKVQLKWPNDLLL----NGNKFCGILIDTCIEKK-NNNWAIIGIGLN-----LGLPRILS-----KKIN--IGNISELL 176 (265)
Q Consensus 114 ~~~~~iKWPNDI~~----~~~Ki~GIL~E~~~~~~-~~~~~viGIGiN-----v~~~~~~~-----~~~~--atsL~~~~ 176 (265)
|+++.+.=-|||.+ +|||++|-=-=.....- ....+.+-+-+. ++.+++-. ..+. .|+|.+..
T Consensus 337 GI~ae~sgRNDI~v~~~~~GkKISGsAq~~~~~~~lhHGTLL~d~dl~~L~~~L~~~~~Kl~sKgvkSVrsRVtNL~e~l 416 (562)
T PRK14061 337 GVSAEASGRNDLVVKTAEGDRKVSGSAYRETKDRGFHHGTLLLNADLSRLANYLNPDKKKLAAKGITSVRSRVTNLTELL 416 (562)
T ss_pred CCCeEECCCccEEEeeCCCCcEEEEEeEEEeCCeEEEEEEEEecCCHHHHHHHhCCCchhhhhhhhhhHHhhceeHHHhC
Confidence 99999988899999 69999994322111100 000111111111 01111100 0111 67777766
Q ss_pred C-CCHHHHHHHHHHHHHHHH
Q psy15214 177 N-MEHEKLLAVFICYLIDSL 195 (265)
Q Consensus 177 g-~~~~~l~~~l~~~l~~~~ 195 (265)
+ ++.+++...++++|.+.+
T Consensus 417 ~~it~e~f~~~L~~~f~~~~ 436 (562)
T PRK14061 417 PGIPHEQVCEAITEAFFAHY 436 (562)
T ss_pred CCCCHHHHHHHHHHHHHHHc
Confidence 6 889999999998887664
No 31
>PRK14346 lipoate-protein ligase B; Provisional
Probab=91.20 E-value=3.5 Score=36.22 Aligned_cols=62 Identities=15% Similarity=0.134 Sum_probs=42.7
Q ss_pred cCeeEEEEEEEeeecCCCccEEEEEeccccCCCCCCCCC-----c---cccccccccC--CCHHHHHHHHHHHHHHHH
Q psy15214 128 NGNKFCGILIDTCIEKKNNNWAIIGIGLNLGLPRILSKK-----I---NIGNISELLN--MEHEKLLAVFICYLIDSL 195 (265)
Q Consensus 128 ~~~Ki~GIL~E~~~~~~~~~~~viGIGiNv~~~~~~~~~-----~---~atsL~~~~g--~~~~~l~~~l~~~l~~~~ 195 (265)
.++|||-|=+-... ....=|+.|||++.-..+.. + ..|||.+. | ++.+++...++++|...+
T Consensus 157 ~~~KIaAiGv~v~r-----~vT~HG~ALNv~~DL~~F~~IvPCGl~~~~vTSL~~l-g~~~~~~~v~~~l~~~f~~~~ 228 (230)
T PRK14346 157 GLGKIAALGIKVSR-----HCTYHGVALNVAMDLEPFSRINPCGYAGLQTVDLSTI-GVQTTWDEAASVLGQQLARYL 228 (230)
T ss_pred ccceEEEEeeEEec-----ceeecceeEEcCCChhhhCcEECCCCCCCceeeHHHh-CCCCCHHHHHHHHHHHHHHHh
Confidence 34799977665432 24556999999986544422 2 28999754 5 888888888888876644
No 32
>PF14563 DUF4444: Domain of unknown function (DUF4444); PDB: 3BFM_A.
Probab=90.61 E-value=0.66 Score=29.48 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=16.7
Q ss_pred EEEEEEeECCCceEEEEeCCceEEE
Q psy15214 230 QKGIVIGINKNGCLLLNTKFGKITI 254 (265)
Q Consensus 230 ~~G~~~gI~~~G~L~l~~~~g~~~~ 254 (265)
.+|.+.|+|++..+++|+++..+.+
T Consensus 10 ~tGtFlGvDE~FGmLLr~~~~T~LI 34 (42)
T PF14563_consen 10 LTGTFLGVDEDFGMLLRDDDTTHLI 34 (42)
T ss_dssp EEEEEEEE-TT--EEEE-SS-EEEE
T ss_pred cceeEEeeccccceEEEeCCccEEE
Confidence 4799999999999999998875543
No 33
>PF10842 DUF2642: Protein of unknown function (DUF2642); InterPro: IPR020139 This entry contains proteins with no known function.
Probab=86.28 E-value=6 Score=27.89 Aligned_cols=40 Identities=10% Similarity=0.219 Sum_probs=32.1
Q ss_pred HHHhcccCCCEEEEEECCeEEEEEEEeECCCceEEEEeCCc
Q psy15214 210 WNFNHAYTNKTVDILKLNKIQKGIVIGINKNGCLLLNTKFG 250 (265)
Q Consensus 210 ~~~~~~~~gk~V~v~~~~~~~~G~~~gI~~~G~L~l~~~~g 250 (265)
|..+..+.|++|.+....+.++|++.++.+| .+.|+..+.
T Consensus 13 yq~lq~liG~~vvV~T~~g~v~G~L~~V~pD-hIvl~~~~~ 52 (66)
T PF10842_consen 13 YQTLQSLIGQRVVVQTTRGSVRGILVDVKPD-HIVLEENGT 52 (66)
T ss_pred HHHHHHhcCCEEEEEEcCCcEEEEEEeecCC-EEEEEeCCc
Confidence 4455567999999999999999999999997 456665543
No 34
>cd01726 LSm6 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm6 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=84.28 E-value=6.3 Score=27.49 Aligned_cols=48 Identities=17% Similarity=0.159 Sum_probs=36.0
Q ss_pred cCCCEEEEEEC-CeEEEEEEEeECCCceEEEEeC----CceEEEEeeeEEEee
Q psy15214 216 YTNKTVDILKL-NKIQKGIVIGINKNGCLLLNTK----FGKITISSGDVSLRL 263 (265)
Q Consensus 216 ~~gk~V~v~~~-~~~~~G~~~gI~~~G~L~l~~~----~g~~~~~~Gev~l~~ 263 (265)
..|++|.|... +..++|++.++|+.=.+.+++. ++.....-|.+.+|.
T Consensus 8 ~~~~~V~V~Lk~g~~~~G~L~~~D~~mNlvL~~~~~~~~~~~~~~~~~v~IRG 60 (67)
T cd01726 8 IIGRPVVVKLNSGVDYRGILACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRG 60 (67)
T ss_pred hCCCeEEEEECCCCEEEEEEEEEccceeeEEeeEEEEeCCceeeEeCCEEEEC
Confidence 48999999876 6679999999999999998643 223344556777664
No 35
>cd01731 archaeal_Sm1 The archaeal sm1 proteins: The Sm proteins are conserved in all three domains of life and are always associated with U-rich RNA sequences. They function to mediate RNA-RNA interactions and RNA biogenesis. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. Eukaryotic Sm proteins form part of specific small nuclear ribonucleoproteins (snRNPs) that are involved in the processing of pre-mRNAs to mature mRNAs, and are a major component of the eukaryotic spliceosome. Most snRNPs consist of seven Sm proteins (B/B', D1, D2, D3, E, F and G) arranged in a ring on a uridine-rich sequence (Sm site), plus a small nuclear RNA (snRNA) (either U1, U2, U5 or U4/6). Since archaebacteria do not have any splicing apparatus, Sm proteins of archaebacteria may play a more general role. Archaeal Lsm proteins are likely to represent the ancestral Sm domain.
Probab=84.25 E-value=6.3 Score=27.54 Aligned_cols=48 Identities=21% Similarity=0.122 Sum_probs=35.0
Q ss_pred cCCCEEEEEEC-CeEEEEEEEeECCCceEEEEeCCc----eEEEEeeeEEEee
Q psy15214 216 YTNKTVDILKL-NKIQKGIVIGINKNGCLLLNTKFG----KITISSGDVSLRL 263 (265)
Q Consensus 216 ~~gk~V~v~~~-~~~~~G~~~gI~~~G~L~l~~~~g----~~~~~~Gev~l~~ 263 (265)
+.|++|.+... +..+.|++.++|+...+++++... .....-|.+.+|.
T Consensus 8 ~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~lg~~~iRG 60 (68)
T cd01731 8 SLNKPVLVKLKGGKEVRGRLKSYDQHMNLVLEDAEEIDDGEPVRKYGRVVIRG 60 (68)
T ss_pred hcCCEEEEEECCCCEEEEEEEEECCcceEEEeeEEEEecCCeEeEcCcEEEeC
Confidence 47999999876 677999999999999999975421 1233445665553
No 36
>smart00651 Sm snRNP Sm proteins. small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing
Probab=84.17 E-value=4.7 Score=27.73 Aligned_cols=49 Identities=18% Similarity=0.093 Sum_probs=36.4
Q ss_pred ccCCCEEEEEEC-CeEEEEEEEeECCCceEEEEeCCc-----eEEEEeeeEEEee
Q psy15214 215 AYTNKTVDILKL-NKIQKGIVIGINKNGCLLLNTKFG-----KITISSGDVSLRL 263 (265)
Q Consensus 215 ~~~gk~V~v~~~-~~~~~G~~~gI~~~G~L~l~~~~g-----~~~~~~Gev~l~~ 263 (265)
.+.|++|.+... +..+.|++.++|+...+.+++... .....-|.+.+|.
T Consensus 5 ~~~~~~V~V~l~~g~~~~G~L~~~D~~~NlvL~~~~e~~~~~~~~~~~~~~~IrG 59 (67)
T smart00651 5 KLIGKRVLVELKNGREYRGTLKGFDQFMNLVLEDVEETVKDGEKKRKLGLVFIRG 59 (67)
T ss_pred HhCCcEEEEEECCCcEEEEEEEEECccccEEEccEEEEecCCcEEeEeCCEEEcC
Confidence 457999999876 667999999999999999964322 2345556666653
No 37
>cd00600 Sm_like The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=83.62 E-value=4 Score=27.66 Aligned_cols=48 Identities=21% Similarity=0.209 Sum_probs=35.3
Q ss_pred cCCCEEEEEEC-CeEEEEEEEeECCCceEEEEeCCc----eEEEEeeeEEEee
Q psy15214 216 YTNKTVDILKL-NKIQKGIVIGINKNGCLLLNTKFG----KITISSGDVSLRL 263 (265)
Q Consensus 216 ~~gk~V~v~~~-~~~~~G~~~gI~~~G~L~l~~~~g----~~~~~~Gev~l~~ 263 (265)
+.|++|.+... +..+.|++.++|+...+.+.+..- .+...-|++.+|.
T Consensus 4 ~~g~~V~V~l~~g~~~~G~L~~~D~~~Ni~L~~~~~~~~~~~~~~~~~~~irG 56 (63)
T cd00600 4 LVGKTVRVELKDGRVLEGVLVAFDKYMNLVLDDVEETIKEGKKRVLGLVLIRG 56 (63)
T ss_pred HCCCEEEEEECCCcEEEEEEEEECCCCCEEECCEEEEecCCcEEECCeEEEEC
Confidence 47999999876 677999999999999999864321 1334456666654
No 38
>PRK00737 small nuclear ribonucleoprotein; Provisional
Probab=82.78 E-value=7.5 Score=27.58 Aligned_cols=48 Identities=21% Similarity=0.207 Sum_probs=34.7
Q ss_pred cCCCEEEEEEC-CeEEEEEEEeECCCceEEEEeC----CceEEEEeeeEEEee
Q psy15214 216 YTNKTVDILKL-NKIQKGIVIGINKNGCLLLNTK----FGKITISSGDVSLRL 263 (265)
Q Consensus 216 ~~gk~V~v~~~-~~~~~G~~~gI~~~G~L~l~~~----~g~~~~~~Gev~l~~ 263 (265)
..|++|.|... +..+.|++.++|+.-.+++++. ++...-.-|.+.+|.
T Consensus 12 ~~~k~V~V~lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG 64 (72)
T PRK00737 12 ALNSPVLVRLKGGREFRGELQGYDIHMNLVLDNAEEIQDGEVVRKLGKVVIRG 64 (72)
T ss_pred hCCCEEEEEECCCCEEEEEEEEEcccceeEEeeEEEEcCCCeEeEcCcEEEeC
Confidence 37999999875 7779999999999999999753 222223445565553
No 39
>cd06168 LSm9 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm9 proteins have a single Sm-like domain structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=81.25 E-value=4.4 Score=29.23 Aligned_cols=34 Identities=12% Similarity=0.293 Sum_probs=29.1
Q ss_pred ccCCCEEEEEEC-CeEEEEEEEeECCCceEEEEeC
Q psy15214 215 AYTNKTVDILKL-NKIQKGIVIGINKNGCLLLNTK 248 (265)
Q Consensus 215 ~~~gk~V~v~~~-~~~~~G~~~gI~~~G~L~l~~~ 248 (265)
.++|++|++... +..+.|++.++|..+.+++.+.
T Consensus 7 ~~l~~~v~V~l~dgR~~~G~l~~~D~~~NivL~~~ 41 (75)
T cd06168 7 SLLGRTMRIHMTDGRTLVGVFLCTDRDCNIILGSA 41 (75)
T ss_pred HhcCCeEEEEEcCCeEEEEEEEEEcCCCcEEecCc
Confidence 458999999876 6668999999999999999644
No 40
>cd01722 Sm_F The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit F is capable of forming both homo- and hetero-heptamer ring structures. To form the hetero-heptamer, Sm subunit F initially binds subunits E and G to form a trimer which then assembles onto snRNA along with the D3/B and D1/D2 heterodimers.
Probab=80.85 E-value=7.7 Score=27.18 Aligned_cols=48 Identities=27% Similarity=0.238 Sum_probs=36.0
Q ss_pred cCCCEEEEEEC-CeEEEEEEEeECCCceEEEEeC----CceEEEEeeeEEEee
Q psy15214 216 YTNKTVDILKL-NKIQKGIVIGINKNGCLLLNTK----FGKITISSGDVSLRL 263 (265)
Q Consensus 216 ~~gk~V~v~~~-~~~~~G~~~gI~~~G~L~l~~~----~g~~~~~~Gev~l~~ 263 (265)
++|++|.|... +..++|++.++|..=.+.+++. ++.....-|++.+|.
T Consensus 9 ~~g~~V~V~Lk~g~~~~G~L~~~D~~mNi~L~~~~e~~~~~~~~~lg~~~IRG 61 (68)
T cd01722 9 LTGKPVIVKLKWGMEYKGTLVSVDSYMNLQLANTEEYIDGKSTGNLGEVLIRC 61 (68)
T ss_pred cCCCEEEEEECCCcEEEEEEEEECCCEEEEEeeEEEEeCCccccCcCcEEEEC
Confidence 48999999877 6779999999999999998643 222334447777764
No 41
>cd01717 Sm_B The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit B heterodimerizes with subunit D3 and three such heterodimers form a hexameric ring structure with alternating B and D3 subunits. The D3 - B heterodimer also assembles into a heptameric ring containing D1, D2, E, F, and G subunits. Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=79.34 E-value=4 Score=29.53 Aligned_cols=36 Identities=14% Similarity=0.108 Sum_probs=29.9
Q ss_pred hcccCCCEEEEEEC-CeEEEEEEEeECCCceEEEEeC
Q psy15214 213 NHAYTNKTVDILKL-NKIQKGIVIGINKNGCLLLNTK 248 (265)
Q Consensus 213 ~~~~~gk~V~v~~~-~~~~~G~~~gI~~~G~L~l~~~ 248 (265)
+..++|++|.+... +..+.|++.++|....|++.+.
T Consensus 5 l~~~l~~~V~V~l~dgR~~~G~L~~~D~~~NlVL~~~ 41 (79)
T cd01717 5 MLQLINYRLRVTLQDGRQFVGQFLAFDKHMNLVLSDC 41 (79)
T ss_pred hHHHcCCEEEEEECCCcEEEEEEEEEcCccCEEcCCE
Confidence 34568999999766 6679999999999999998643
No 42
>cd01719 Sm_G The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit G binds subunits E and F to form a trimer which then assembles onto snRNA along with the D1/D2 and D3/B heterodimers forming a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=76.38 E-value=11 Score=26.75 Aligned_cols=49 Identities=24% Similarity=0.301 Sum_probs=34.7
Q ss_pred ccCCCEEEEEEC-CeEEEEEEEeECCCceEEEEeCC----ceEEEEeeeEEEee
Q psy15214 215 AYTNKTVDILKL-NKIQKGIVIGINKNGCLLLNTKF----GKITISSGDVSLRL 263 (265)
Q Consensus 215 ~~~gk~V~v~~~-~~~~~G~~~gI~~~G~L~l~~~~----g~~~~~~Gev~l~~ 263 (265)
.+++|+|.+... +..+.|++.|+|+.-.|++++.. +...-.-|.+.+|.
T Consensus 7 ~~i~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~~E~~~~~~~~~lg~v~IRG 60 (72)
T cd01719 7 KYMDKKLSLKLNGNRKVSGILRGFDPFMNLVLDDAVEVNSGGEKNNIGMVVIRG 60 (72)
T ss_pred HhCCCeEEEEECCCeEEEEEEEEEcccccEEeccEEEEccCCceeEeceEEECC
Confidence 358999999766 67799999999999999996431 21223345665553
No 43
>cd01728 LSm1 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm1 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=76.07 E-value=19 Score=25.78 Aligned_cols=34 Identities=21% Similarity=0.227 Sum_probs=29.0
Q ss_pred ccCCCEEEEEEC-CeEEEEEEEeECCCceEEEEeC
Q psy15214 215 AYTNKTVDILKL-NKIQKGIVIGINKNGCLLLNTK 248 (265)
Q Consensus 215 ~~~gk~V~v~~~-~~~~~G~~~gI~~~G~L~l~~~ 248 (265)
.+++++|.+... +..+.|++.++|.-+.+++.+.
T Consensus 9 ~~l~k~v~V~l~~gr~~~G~L~~fD~~~NlvL~d~ 43 (74)
T cd01728 9 DDLDKKVVVLLRDGRKLIGILRSFDQFANLVLQDT 43 (74)
T ss_pred HhcCCEEEEEEcCCeEEEEEEEEECCcccEEecce
Confidence 358999999876 6779999999999999999643
No 44
>cd01732 LSm5 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm4 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=75.48 E-value=18 Score=26.04 Aligned_cols=48 Identities=15% Similarity=0.155 Sum_probs=34.5
Q ss_pred cCCCEEEEEEC-CeEEEEEEEeECCCceEEEEeC-------CceEEEEeeeEEEee
Q psy15214 216 YTNKTVDILKL-NKIQKGIVIGINKNGCLLLNTK-------FGKITISSGDVSLRL 263 (265)
Q Consensus 216 ~~gk~V~v~~~-~~~~~G~~~gI~~~G~L~l~~~-------~g~~~~~~Gev~l~~ 263 (265)
..+++|.+... +..+.|++.|+|.-=.|++++. ++.....-|.+.+|.
T Consensus 11 ~~~~~V~V~l~~gr~~~G~L~g~D~~mNlvL~da~E~~~~~~~~~~~~lg~v~iRG 66 (76)
T cd01732 11 CIGSRIWIVMKSDKEFVGTLLGFDDYVNMVLEDVTEYEITPEGRKITKLDQILLNG 66 (76)
T ss_pred hCCCEEEEEECCCeEEEEEEEEeccceEEEEccEEEEEEcCCCceeeEcCeEEEeC
Confidence 36899999765 6779999999999999998653 222233446666653
No 45
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=74.76 E-value=15 Score=24.10 Aligned_cols=47 Identities=9% Similarity=-0.016 Sum_probs=36.2
Q ss_pred cCCCEEEEEE-CCeEEEEEEEeECCCceEEEEeCC-c-eEEEEeeeEEEe
Q psy15214 216 YTNKTVDILK-LNKIQKGIVIGINKNGCLLLNTKF-G-KITISSGDVSLR 262 (265)
Q Consensus 216 ~~gk~V~v~~-~~~~~~G~~~gI~~~G~L~l~~~~-g-~~~~~~Gev~l~ 262 (265)
-.|..|.+.. ++..++|++++++.++...|.-.| | ...+...++...
T Consensus 4 ~~G~~~~a~~~d~~wyra~I~~~~~~~~~~V~f~D~G~~~~v~~~~l~~l 53 (57)
T smart00333 4 KVGDKVAARWEDGEWYRARIIKVDGEQLYEVFFIDYGNEEVVPPSDLRPL 53 (57)
T ss_pred CCCCEEEEEeCCCCEEEEEEEEECCCCEEEEEEECCCccEEEeHHHeecC
Confidence 3678888887 788899999999998888887544 7 677777766543
No 46
>PRK14645 hypothetical protein; Provisional
Probab=74.34 E-value=9.5 Score=31.42 Aligned_cols=53 Identities=6% Similarity=0.013 Sum_probs=39.7
Q ss_pred HHHHHHhcccCCCEEEEEECCeEEEEEEEeECCCceEEEEeCCceEEEEeeeEE
Q psy15214 207 MKYWNFNHAYTNKTVDILKLNKIQKGIVIGINKNGCLLLNTKFGKITISSGDVS 260 (265)
Q Consensus 207 ~~~~~~~~~~~gk~V~v~~~~~~~~G~~~gI~~~G~L~l~~~~g~~~~~~Gev~ 260 (265)
+..-.++..++|+.|.+..+++.++|++.++++ +.+.+..+++...|..++|.
T Consensus 91 L~~~~df~r~~G~~v~v~~~~k~~~G~L~~~~d-~~i~l~~~~~~~~i~~~~I~ 143 (154)
T PRK14645 91 LFTARHFERFAGLKAKVRGPGENFTGRIKAVSG-DQVTFDVGGEDRTLRIGTFQ 143 (154)
T ss_pred CCCHHHHHHhCCCEEEEEcCCeEEEEEEEEEeC-CEEEEEECCeEEEEEHHHhh
Confidence 334455556789999998878889999999987 45666666667777776663
No 47
>cd01725 LSm2 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm2 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=72.83 E-value=21 Score=25.91 Aligned_cols=49 Identities=12% Similarity=0.060 Sum_probs=35.6
Q ss_pred ccCCCEEEEEEC-CeEEEEEEEeECCCceEEEEeC-----Cc-eEEEEeeeEEEee
Q psy15214 215 AYTNKTVDILKL-NKIQKGIVIGINKNGCLLLNTK-----FG-KITISSGDVSLRL 263 (265)
Q Consensus 215 ~~~gk~V~v~~~-~~~~~G~~~gI~~~G~L~l~~~-----~g-~~~~~~Gev~l~~ 263 (265)
.+.|++|.|..- +..++|++.++|..=.+.++.. ++ .....-+++.+|.
T Consensus 8 ~l~g~~V~VeLKng~~~~G~L~~vD~~MNi~L~n~~~~~~~~~~~~~~~~~v~IRG 63 (81)
T cd01725 8 TLVGKEVTVELKNDLSIRGTLHSVDQYLNIKLTNISVTDPEKYPHMLSVKNCFIRG 63 (81)
T ss_pred hCCCCEEEEEECCCcEEEEEEEEECCCcccEEEEEEEEcCCCcccccccCeEEEEC
Confidence 348999999765 6779999999999999999743 22 2222336677764
No 48
>cd01721 Sm_D3 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit D3 heterodimerizes with subunit B and three such heterodimers form a hexameric ring structure with alternating B and D3 subunits. The D3 - B heterodimer also assembles into a heptameric ring containing D1, D2, E, F, and G subunits. Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=72.38 E-value=26 Score=24.68 Aligned_cols=49 Identities=16% Similarity=0.123 Sum_probs=36.9
Q ss_pred ccCCCEEEEEEC-CeEEEEEEEeECCCceEEEEeC-----CceEEEEeeeEEEeec
Q psy15214 215 AYTNKTVDILKL-NKIQKGIVIGINKNGCLLLNTK-----FGKITISSGDVSLRLK 264 (265)
Q Consensus 215 ~~~gk~V~v~~~-~~~~~G~~~gI~~~G~L~l~~~-----~g~~~~~~Gev~l~~~ 264 (265)
...|++|.|..- +..++|++.++|..-.+.+++. +|. ...-|++.+|..
T Consensus 7 ~~~g~~V~VeLk~g~~~~G~L~~~D~~MNl~L~~~~~~~~~g~-~~~~~~v~IRG~ 61 (70)
T cd01721 7 EAEGHIVTVELKTGEVYRGKLIEAEDNMNCQLKDVTVTARDGR-VSQLEQVYIRGS 61 (70)
T ss_pred hCCCCEEEEEECCCcEEEEEEEEEcCCceeEEEEEEEECCCCc-EeEcCcEEEeCC
Confidence 358999999765 6779999999999999998643 332 234588888753
No 49
>cd01723 LSm4 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm4 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=72.04 E-value=23 Score=25.37 Aligned_cols=48 Identities=13% Similarity=0.034 Sum_probs=35.6
Q ss_pred cCCCEEEEEEC-CeEEEEEEEeECCCceEEEEe-----CCceEEEEeeeEEEee
Q psy15214 216 YTNKTVDILKL-NKIQKGIVIGINKNGCLLLNT-----KFGKITISSGDVSLRL 263 (265)
Q Consensus 216 ~~gk~V~v~~~-~~~~~G~~~gI~~~G~L~l~~-----~~g~~~~~~Gev~l~~ 263 (265)
..|++|.+... +..++|++.++|..=.+.++. .+|......+++.+|.
T Consensus 9 ~~g~~V~VeLkng~~~~G~L~~~D~~mNi~L~~~~~~~~~g~~~~~~~~v~IRG 62 (76)
T cd01723 9 AQNHPMLVELKNGETYNGHLVNCDNWMNIHLREVICTSKDGDKFWKMPECYIRG 62 (76)
T ss_pred cCCCEEEEEECCCCEEEEEEEEEcCCCceEEEeEEEECCCCcEeeeCCcEEEeC
Confidence 47999999876 677999999999999998853 3443322346777775
No 50
>KOG3482|consensus
Probab=71.40 E-value=10 Score=27.07 Aligned_cols=48 Identities=23% Similarity=0.222 Sum_probs=38.7
Q ss_pred cCCCEEEEEEC-CeEEEEEEEeECCCceEEEEeC----CceEEEEeeeEEEee
Q psy15214 216 YTNKTVDILKL-NKIQKGIVIGINKNGCLLLNTK----FGKITISSGDVSLRL 263 (265)
Q Consensus 216 ~~gk~V~v~~~-~~~~~G~~~gI~~~G~L~l~~~----~g~~~~~~Gev~l~~ 263 (265)
+.||+|.+..- ++.++|+.+.+|..-.|++... +|..+-.-|||.+|-
T Consensus 16 l~gk~V~vkLKwg~eYkG~LvsvD~YmNlqL~~~eE~idG~~~g~lGEilIRC 68 (79)
T KOG3482|consen 16 LTGKPVLVKLKWGQEYKGTLVSVDNYMNLQLANAEEYIDGVSTGNLGEILIRC 68 (79)
T ss_pred ccCCeEEEEEecCcEEEEEEEEecchhheehhhhhhhhcccccccceeEEEEe
Confidence 57999999876 7889999999999999998643 355667778888873
No 51
>cd01727 LSm8 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm8 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=70.71 E-value=19 Score=25.64 Aligned_cols=34 Identities=26% Similarity=0.558 Sum_probs=28.5
Q ss_pred ccCCCEEEEEEC-CeEEEEEEEeECCCceEEEEeC
Q psy15214 215 AYTNKTVDILKL-NKIQKGIVIGINKNGCLLLNTK 248 (265)
Q Consensus 215 ~~~gk~V~v~~~-~~~~~G~~~gI~~~G~L~l~~~ 248 (265)
.+++++|.+... +..+.|++.|.|....+++.+.
T Consensus 6 ~~l~~~V~V~l~dgr~~~G~L~~~D~~~NlvL~~~ 40 (74)
T cd01727 6 DYLNKTVSVITVDGRVIVGTLKGFDQATNLILDDS 40 (74)
T ss_pred HhcCCEEEEEECCCcEEEEEEEEEccccCEEccce
Confidence 357999999865 6779999999999999998653
No 52
>cd01724 Sm_D1 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit D1 heterodimerizes with subunit D2 and three such heterodimers form a hexameric ring structure with alternating D1 and D2 subunits. The D1 - D2 heterodimer also assembles into a heptameric ring containing DB, D3, E, F, and G subunits. Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=70.06 E-value=29 Score=25.84 Aligned_cols=49 Identities=24% Similarity=0.291 Sum_probs=36.9
Q ss_pred cCCCEEEEEEC-CeEEEEEEEeECCCceEEEEeC----CceEEEEeeeEEEeec
Q psy15214 216 YTNKTVDILKL-NKIQKGIVIGINKNGCLLLNTK----FGKITISSGDVSLRLK 264 (265)
Q Consensus 216 ~~gk~V~v~~~-~~~~~G~~~gI~~~G~L~l~~~----~g~~~~~~Gev~l~~~ 264 (265)
..|++|++..- +..++|++.++|+.=.+.+++. .+.....-|++.+|..
T Consensus 9 l~g~~V~VeLKng~~~~G~L~~vD~~MNl~L~~a~~~~~~~~~~~~~~v~IRG~ 62 (90)
T cd01724 9 LTNETVTIELKNGTIVHGTITGVDPSMNTHLKNVKLTLKGRNPVPLDTLSIRGN 62 (90)
T ss_pred CCCCEEEEEECCCCEEEEEEEEEcCceeEEEEEEEEEcCCCceeEcceEEEeCC
Confidence 48999999876 6679999999999999998742 2223345588877753
No 53
>cd01733 LSm10 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm10 is an SmD1-like protein which is thought to bind U7 snRNA along with LSm11 and five other Sm subunits to form a 7-member ring structure. LSm10 and the U7 snRNP of which it is a part are thought to play an important role in histone mRNA 3' processing.
Probab=68.88 E-value=31 Score=24.92 Aligned_cols=49 Identities=8% Similarity=0.056 Sum_probs=36.6
Q ss_pred cCCCEEEEEEC-CeEEEEEEEeECCCceEEEEeC----CceEEEEeeeEEEeec
Q psy15214 216 YTNKTVDILKL-NKIQKGIVIGINKNGCLLLNTK----FGKITISSGDVSLRLK 264 (265)
Q Consensus 216 ~~gk~V~v~~~-~~~~~G~~~gI~~~G~L~l~~~----~g~~~~~~Gev~l~~~ 264 (265)
..|+.|.|..- +..++|++.++|..=.+.+.+. .+.....-|++.+|..
T Consensus 17 l~g~~V~VeLKng~~~~G~L~~vD~~MNl~L~~~~~~~~~~~~~~~~~v~IRG~ 70 (78)
T cd01733 17 LQGKVVTVELRNETTVTGRIASVDAFMNIRLAKVTIIDRNGKQVQVEEIMVTGR 70 (78)
T ss_pred CCCCEEEEEECCCCEEEEEEEEEcCCceeEEEEEEEEcCCCceeECCcEEEECC
Confidence 48999999765 6679999999999999998643 1223345588888753
No 54
>cd01729 LSm7 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm7 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=66.05 E-value=14 Score=26.89 Aligned_cols=35 Identities=20% Similarity=0.290 Sum_probs=29.4
Q ss_pred hcccCCCEEEEEEC-CeEEEEEEEeECCCceEEEEe
Q psy15214 213 NHAYTNKTVDILKL-NKIQKGIVIGINKNGCLLLNT 247 (265)
Q Consensus 213 ~~~~~gk~V~v~~~-~~~~~G~~~gI~~~G~L~l~~ 247 (265)
+..+++++|.|... +..+.|++.++|....|++..
T Consensus 7 L~~~i~k~V~V~l~~gr~~~G~L~~~D~~mNlvL~~ 42 (81)
T cd01729 7 LSKYVDKKIRVKFQGGREVTGILKGYDQLLNLVLDD 42 (81)
T ss_pred HHHhcCCeEEEEECCCcEEEEEEEEEcCcccEEecC
Confidence 34458999999765 777999999999999999964
No 55
>PF11095 Gemin7: Gem-associated protein 7 (Gemin7); InterPro: IPR020338 Gem-associated protein 7 (Gemin7) is a component of the survival of motor neuron complex, which functions in the assembly of spliceosomal small nuclear ribonucleoproteins. Gemin7 interacts with several Sm proteins of spliceosomal small nuclear ribonucleoproteins, especially SmE []. Gem-associated protein 7 is found in the nucleoplasm, in nuclear "gems" (Gemini of Cajal bodies), and in the cytoplasm. Three transcript variants encoding the same protein have been found for this gene [].; GO: 0032797 SMN complex; PDB: 1Y96_D.
Probab=63.29 E-value=29 Score=25.41 Aligned_cols=56 Identities=13% Similarity=0.029 Sum_probs=36.1
Q ss_pred HHHHHHHHH-hcccCCCEEEEEECC-eEEEEEEEeECCCceEEEE----eCCce--E-EEEeeeE
Q psy15214 204 SIFMKYWNF-NHAYTNKTVDILKLN-KIQKGIVIGINKNGCLLLN----TKFGK--I-TISSGDV 259 (265)
Q Consensus 204 ~~~~~~~~~-~~~~~gk~V~v~~~~-~~~~G~~~gI~~~G~L~l~----~~~g~--~-~~~~Gev 259 (265)
+.+.++|.. +..+.|++|.|...+ ..++|++.+.|.++..... ++=|. + .+-..||
T Consensus 9 ~~LRerfLr~l~~~~gk~v~f~l~e~t~V~a~F~a~d~~~~~f~Vs~L~TPlGv~~eAlLR~~DV 73 (80)
T PF11095_consen 9 AFLRERFLRSLLAMVGKPVEFTLHENTTVSARFGACDIDVSNFQVSNLQTPLGVQPEALLRCSDV 73 (80)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEEEGGG-EEEEEEEEE-TTS-EEEEEEEETTTTEEEEEEEEGGGE
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCCeEEEEEEEEecCchheEEhhhcCCCcccChhheeecCCE
Confidence 345556655 344679999999874 4589999999999987653 56663 2 2445554
No 56
>PF14438 SM-ATX: Ataxin 2 SM domain; PDB: 1M5Q_1.
Probab=60.48 E-value=29 Score=24.65 Aligned_cols=33 Identities=15% Similarity=0.225 Sum_probs=24.4
Q ss_pred cccCCCEEEEEEC-CeEEEEEEEeECC---CceEEEE
Q psy15214 214 HAYTNKTVDILKL-NKIQKGIVIGINK---NGCLLLN 246 (265)
Q Consensus 214 ~~~~gk~V~v~~~-~~~~~G~~~gI~~---~G~L~l~ 246 (265)
..+.|++|.+..- +..|+|++...+. +..+.++
T Consensus 8 ~~lvG~~V~V~~~~G~~yeGif~s~s~~~~~~~vvLk 44 (77)
T PF14438_consen 8 TNLVGQTVEVTTKNGSVYEGIFHSASPESNEFDVVLK 44 (77)
T ss_dssp HTTTTSEEEEEETTS-EEEEEEEEE-T---T--EEEE
T ss_pred HhCcCCEEEEEECCCCEEEEEEEeCCCcccceeEEEE
Confidence 4578999999877 6679999999999 6677765
No 57
>cd01734 YlxS_C YxlS is a Bacillus subtilis gene of unknown function with two domains that each have an alpha/beta fold. The N-terminal domain is composed of two alpha-helices and a three-stranded beta-sheet, while the C-terminal domain is composed of one alpha-helix and a five-stranded beta-sheet. This CD represents the C-terminal domain which has a fold similar to the Sm fold of proteins like Sm-D3.
Probab=59.52 E-value=21 Score=25.88 Aligned_cols=49 Identities=14% Similarity=0.127 Sum_probs=32.6
Q ss_pred HHHhcccCCCEEEEEE----C-CeEEEEEEEeECCCceEEEEeC----CceEEEEeeeE
Q psy15214 210 WNFNHAYTNKTVDILK----L-NKIQKGIVIGINKNGCLLLNTK----FGKITISSGDV 259 (265)
Q Consensus 210 ~~~~~~~~gk~V~v~~----~-~~~~~G~~~gI~~~G~L~l~~~----~g~~~~~~Gev 259 (265)
-.++-.+.|+.|.+.. + ...+.|.+.++++++ +.+..+ ++...|.-.+|
T Consensus 17 ~~~~~r~~G~~v~v~~~~~~~~~~~~~G~L~~~~~~~-v~l~~~~~~~~~~~~i~~~~I 74 (83)
T cd01734 17 EADFERAVGKYVHVKLYQPIDGQKEFEGTLLGVDDDT-VTLEVDIKTRGKTVEIPLDKI 74 (83)
T ss_pred HHHHHHhCCCEEEEEEEcccCCeEEEEEEEEeEeCCE-EEEEEecCCCCeEEEEEhHHe
Confidence 4445567899999865 2 346899999999965 455554 33555655554
No 58
>KOG0325|consensus
Probab=59.35 E-value=32 Score=29.98 Aligned_cols=80 Identities=20% Similarity=0.262 Sum_probs=53.3
Q ss_pred HcCC--ccceeeCCcEEEcCeeEEEEEEEeeecCCCccEEEEEeccccCCCCCCCCC-----c--c-ccccccccC--CC
Q psy15214 112 KFGQ--KVQLKWPNDLLLNGNKFCGILIDTCIEKKNNNWAIIGIGLNLGLPRILSKK-----I--N-IGNISELLN--ME 179 (265)
Q Consensus 112 ~~~~--~~~iKWPNDI~~~~~Ki~GIL~E~~~~~~~~~~~viGIGiNv~~~~~~~~~-----~--~-atsL~~~~g--~~ 179 (265)
.+++ ....| =--+++.++|+|-|=++.... ---=|+.||++..-.-++. + . .|||+.+.. ++
T Consensus 123 ~~~i~~~~~t~-~tgvwV~d~k~aaiGi~vsr~-----IT~HGlaLN~~tDL~~fnhiv~CGi~~~~vtSi~~e~~~~~~ 196 (226)
T KOG0325|consen 123 DFGIKGTASTK-DTGVWVGDAKIAAIGIRVSRE-----ITYHGLALNVNTDLTYFNHIVPCGIYGRGVTSISKEIRRLVT 196 (226)
T ss_pred ccccccccccc-ccceeecCCeeEEEEEEecCc-----EeecceEEEeccCcchhhccccceeeccccceehhhhccccc
Confidence 3554 45556 455788888999998887643 2334899999875433322 1 1 899997655 77
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy15214 180 HEKLLAVFICYLIDSLKL 197 (265)
Q Consensus 180 ~~~l~~~l~~~l~~~~~~ 197 (265)
..++.+..+..|.+.+..
T Consensus 197 ~~~~~~~~l~~l~k~f~~ 214 (226)
T KOG0325|consen 197 VEESVAIRLVSLTKVFSC 214 (226)
T ss_pred hhHhHHHHHHHHHHhhhh
Confidence 777777777776666554
No 59
>PRK14638 hypothetical protein; Provisional
Probab=58.34 E-value=38 Score=27.70 Aligned_cols=57 Identities=18% Similarity=0.134 Sum_probs=38.7
Q ss_pred ChHHHHHHHHHhcccCCCEEEEEE-CCeEEEEEEEeECCCceEEEEeCCceEEEEeeeE
Q psy15214 202 GFSIFMKYWNFNHAYTNKTVDILK-LNKIQKGIVIGINKNGCLLLNTKFGKITISSGDV 259 (265)
Q Consensus 202 ~~~~~~~~~~~~~~~~gk~V~v~~-~~~~~~G~~~gI~~~G~L~l~~~~g~~~~~~Gev 259 (265)
|...-+..-.++..+.|+.|+|.. +++.++|++.+++++ .+.+..+++...+.-.+|
T Consensus 84 GldRpL~~~~~f~r~~G~~v~V~~~~~k~~~G~L~~~~~~-~i~l~~~~~~~~i~~~~I 141 (150)
T PRK14638 84 GLDRPLRGPKDYVRFTGKLAKIVTKDGKTFIGRIESFVDG-TITISDEKEKYEINIDDV 141 (150)
T ss_pred CCCCCCCCHHHHHHhCCCEEEEEECCCcEEEEEEEEEeCC-EEEEEECCcEEEEEhHHc
Confidence 333334445556677899999987 467799999999875 566665555666665554
No 60
>COG1958 LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription]
Probab=54.41 E-value=50 Score=23.63 Aligned_cols=48 Identities=25% Similarity=0.326 Sum_probs=34.6
Q ss_pred cCCCEEEEEEC-CeEEEEEEEeECCCceEEEEeC------Cc-e-EEEEeeeEEEee
Q psy15214 216 YTNKTVDILKL-NKIQKGIVIGINKNGCLLLNTK------FG-K-ITISSGDVSLRL 263 (265)
Q Consensus 216 ~~gk~V~v~~~-~~~~~G~~~gI~~~G~L~l~~~------~g-~-~~~~~Gev~l~~ 263 (265)
.+|++|.|..- +..+.|+..++|..=.|.+.+. ++ . ...+.|++.+|.
T Consensus 15 ~~~~~V~V~lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~~~~~~~~~~IRG 71 (79)
T COG1958 15 LLNKRVLVKLKNGREYRGTLVGFDQYMNLVLDDVEEIISHDGEKNVRRLGGEVLIRG 71 (79)
T ss_pred hhCCEEEEEECCCCEEEEEEEEEccceeEEEeceEEEeccCCccccceeccEEEEEC
Confidence 45799999876 6779999999999999998643 23 1 234444776664
No 61
>PRK14630 hypothetical protein; Provisional
Probab=50.90 E-value=49 Score=26.80 Aligned_cols=48 Identities=13% Similarity=0.312 Sum_probs=33.9
Q ss_pred HHhcccCCCEEEEEECCeEEEEEEEeECCCceEEEEeCCceEEEEeeeE
Q psy15214 211 NFNHAYTNKTVDILKLNKIQKGIVIGINKNGCLLLNTKFGKITISSGDV 259 (265)
Q Consensus 211 ~~~~~~~gk~V~v~~~~~~~~G~~~gI~~~G~L~l~~~~g~~~~~~Gev 259 (265)
.++-.+.|++|++...+...+|++.++++ +.+.+..+++...|.-.+|
T Consensus 90 ~df~r~~G~~v~V~l~~~~~~G~L~~~~d-~~i~l~~~~~~~~i~~~~I 137 (143)
T PRK14630 90 REFKIFEGKKIKLMLDNDFEEGFILEAKA-DSFIFKTDSKEVNVLYSDV 137 (143)
T ss_pred HHHHHhCCCEEEEEEcCcceEEEEEEEeC-CEEEEEECCEEEEEEhHhc
Confidence 34446789999998876667899999977 4555566555666655554
No 62
>cd01720 Sm_D2 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit D2 heterodimerizes with subunit D1 and three such heterodimers form a hexameric ring structure with alternating D1 and D2 subunits. The D1 - D2 heterodimer also assembles into a heptameric ring containing D2, D3, E, F, and G subunits. Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=45.70 E-value=1.2e+02 Score=22.49 Aligned_cols=32 Identities=25% Similarity=0.196 Sum_probs=27.0
Q ss_pred CCCEEEEEEC-CeEEEEEEEeECCCceEEEEeC
Q psy15214 217 TNKTVDILKL-NKIQKGIVIGINKNGCLLLNTK 248 (265)
Q Consensus 217 ~gk~V~v~~~-~~~~~G~~~gI~~~G~L~l~~~ 248 (265)
.+++|.|... +..+.|++.++|.-=.|++++.
T Consensus 13 ~~~~V~V~lr~~r~~~G~L~~fD~hmNlvL~d~ 45 (87)
T cd01720 13 NNTQVLINCRNNKKLLGRVKAFDRHCNMVLENV 45 (87)
T ss_pred CCCEEEEEEcCCCEEEEEEEEecCccEEEEcce
Confidence 6899999876 6678999999999999998643
No 63
>PRK14631 hypothetical protein; Provisional
Probab=45.14 E-value=45 Score=28.02 Aligned_cols=56 Identities=9% Similarity=0.084 Sum_probs=37.6
Q ss_pred HHHHHHHHHhcccCCCEEEEEE-----CCeEEEEEEEeECC-CceEEEEeCCc-eEEEEeeeE
Q psy15214 204 SIFMKYWNFNHAYTNKTVDILK-----LNKIQKGIVIGINK-NGCLLLNTKFG-KITISSGDV 259 (265)
Q Consensus 204 ~~~~~~~~~~~~~~gk~V~v~~-----~~~~~~G~~~gI~~-~G~L~l~~~~g-~~~~~~Gev 259 (265)
..-+....++..+.|+.|+|.. +.+.++|++.+++. ++.+.+...++ ...|...+|
T Consensus 103 dRpL~~~~df~r~~G~~V~V~l~~~~~~~k~~~G~L~~v~~~~~~v~l~~~~~~~~~i~~~~I 165 (174)
T PRK14631 103 DRPFFQLEQLQGYIGQQVALRLIAAVENRRKFQAKLLAVDLENEEIQVEVEGKHVLDIDSNNI 165 (174)
T ss_pred CCcCCCHHHHHHhCCCeEEEEEecccCCceEEEEEEEEeecCCCEEEEEEcCCcEEEEEhHHc
Confidence 3334445566678899999986 35679999999982 45677765544 456655554
No 64
>PRK14637 hypothetical protein; Provisional
Probab=45.06 E-value=75 Score=26.00 Aligned_cols=52 Identities=17% Similarity=0.196 Sum_probs=34.5
Q ss_pred HHHHHHhcccCCCEEEEEE-CCeEE-EEEEEeECCCceEEEEeCCceEEEEeeeE
Q psy15214 207 MKYWNFNHAYTNKTVDILK-LNKIQ-KGIVIGINKNGCLLLNTKFGKITISSGDV 259 (265)
Q Consensus 207 ~~~~~~~~~~~gk~V~v~~-~~~~~-~G~~~gI~~~G~L~l~~~~g~~~~~~Gev 259 (265)
+..-.++..+.|+.|+|.. +.+.+ +|++.+++++ .+.+..+++...|.-.+|
T Consensus 87 L~~~~~f~r~~G~~V~V~l~~~~~~~~G~L~~~~d~-~v~l~~~~~~~~i~~~~I 140 (151)
T PRK14637 87 IKNAAEFSIFVGETVKVWFECTGQWQVGTIAEADET-CLVLTSDGVPVTIPYVQI 140 (151)
T ss_pred CCCHHHHHHhCCCEEEEEECCCCcEEEEEEEEEeCC-EEEEEECCEEEEEEHHHe
Confidence 3344555567899999987 44455 7999999876 555555444555655544
No 65
>PRK14640 hypothetical protein; Provisional
Probab=43.73 E-value=1e+02 Score=25.21 Aligned_cols=52 Identities=8% Similarity=0.098 Sum_probs=34.9
Q ss_pred HHHHHHhcccCCCEEEEEE-----CCeEEEEEEEeECCCceEEEEeCCceEEEEeeeE
Q psy15214 207 MKYWNFNHAYTNKTVDILK-----LNKIQKGIVIGINKNGCLLLNTKFGKITISSGDV 259 (265)
Q Consensus 207 ~~~~~~~~~~~gk~V~v~~-----~~~~~~G~~~gI~~~G~L~l~~~~g~~~~~~Gev 259 (265)
+..-.++-.+.|+.|+|.. +.+.++|++.+++++ .+.+..++....|.-.+|
T Consensus 86 L~~~~~f~r~~G~~v~V~l~~~~~~~k~~~G~L~~v~~~-~v~l~~~~~~~~i~~~~I 142 (152)
T PRK14640 86 LFKVAQFEKYVGQEAAVTLRMATNNRRKFKGVIKAVQGD-MITLTVDGKDEVLAFTNI 142 (152)
T ss_pred CCCHHHHHHhCCCeEEEEEecccCCceEEEEEEEEEeCC-EEEEEECCeEEEEEhHHe
Confidence 3334455567899999975 357799999999875 455555544555555444
No 66
>PRK14633 hypothetical protein; Provisional
Probab=42.98 E-value=50 Score=26.97 Aligned_cols=58 Identities=17% Similarity=0.203 Sum_probs=37.3
Q ss_pred ChHHHHHHHHHhcccCCCEEEEEE-----CCeEEEEEEEeECCCceEEEEeCCc-eEEEEeeeEE
Q psy15214 202 GFSIFMKYWNFNHAYTNKTVDILK-----LNKIQKGIVIGINKNGCLLLNTKFG-KITISSGDVS 260 (265)
Q Consensus 202 ~~~~~~~~~~~~~~~~gk~V~v~~-----~~~~~~G~~~gI~~~G~L~l~~~~g-~~~~~~Gev~ 260 (265)
|...-+..-.++-.+.|+.|+|.. +.+.++|++.+++++ .+.+...+| ...|.-.+|+
T Consensus 78 GldRpL~~~~~f~r~~G~~v~V~~~~~~~~~~~~~G~L~~v~~~-~i~l~~~~~~~~~i~~~~I~ 141 (150)
T PRK14633 78 GMNRQIFNIIQAQALVGFNVKAVTLAPVGSQTKFKGVLERVEGN-NVILNLEDGKEISFDFDELK 141 (150)
T ss_pred CCCCCCCCHHHHHHhCCCeEEEEEecccCCcEEEEEEEEEEeCC-EEEEEEcCCcEEEEEhHHee
Confidence 333333445555567899999875 457799999999875 555554334 5566555543
No 67
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=42.86 E-value=99 Score=20.53 Aligned_cols=45 Identities=16% Similarity=0.170 Sum_probs=34.3
Q ss_pred ccCCCEEEEEE--CCeEEEEEEEeECCCceEEEEeCC---c-eEEEEeeeE
Q psy15214 215 AYTNKTVDILK--LNKIQKGIVIGINKNGCLLLNTKF---G-KITISSGDV 259 (265)
Q Consensus 215 ~~~gk~V~v~~--~~~~~~G~~~gI~~~G~L~l~~~~---g-~~~~~~Gev 259 (265)
+-.|..|.+.. .+..+.|++..++.++...|.-.+ + ..++..-++
T Consensus 3 ~~~G~~Ve~~~~~~~~W~~a~V~~~~~~~~~~V~~~~~~~~~~e~v~~~~L 53 (61)
T smart00743 3 FKKGDRVEVFSKEEDSWWEAVVTKVLGDGKYLVRYLTESEPLKETVDWSDL 53 (61)
T ss_pred cCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCcccEEEEeHHHc
Confidence 45799999998 788999999999997878887554 3 455554443
No 68
>PRK14646 hypothetical protein; Provisional
Probab=42.69 E-value=45 Score=27.39 Aligned_cols=58 Identities=19% Similarity=0.100 Sum_probs=39.4
Q ss_pred cChHHHHHHHHHhcccCCCEEEEEEC-----CeEEEEEEEeECCCceEEEEeCCceEEEEeeeE
Q psy15214 201 YGFSIFMKYWNFNHAYTNKTVDILKL-----NKIQKGIVIGINKNGCLLLNTKFGKITISSGDV 259 (265)
Q Consensus 201 ~~~~~~~~~~~~~~~~~gk~V~v~~~-----~~~~~G~~~gI~~~G~L~l~~~~g~~~~~~Gev 259 (265)
-|...-+..-.++..+.|+.|+|... .+.++|++.+++++ .+.+..+++...|.-.+|
T Consensus 83 PGldRpL~~~~df~r~~G~~v~V~l~~~~~~~~~~~G~L~~~~~~-~v~l~~~g~~~~i~~~~I 145 (155)
T PRK14646 83 QGVSDELTSERDFKTFKGFPVNVELNQKNSKIKFLNGLLYEKSKD-YLAINIKGKIKKIPFNEV 145 (155)
T ss_pred CCCCCcCCCHHHHHHhCCCEEEEEEecCcCCeEEEEEEEEEEeCC-EEEEEECCEEEEEEHHHe
Confidence 34444444556666789999999752 35678999999984 666666555666665554
No 69
>PRK14639 hypothetical protein; Provisional
Probab=42.60 E-value=88 Score=25.20 Aligned_cols=52 Identities=15% Similarity=0.215 Sum_probs=34.8
Q ss_pred HHHHHHhcccCCCEEEEEE-CCeEEEEEEEeECCCceEEEEe-CCc-eEEEEeeeE
Q psy15214 207 MKYWNFNHAYTNKTVDILK-LNKIQKGIVIGINKNGCLLLNT-KFG-KITISSGDV 259 (265)
Q Consensus 207 ~~~~~~~~~~~gk~V~v~~-~~~~~~G~~~gI~~~G~L~l~~-~~g-~~~~~~Gev 259 (265)
+..-+++-.+.|+.|++.. +.+.+.|++.++++++ +.+.. .++ ..++.-.+|
T Consensus 77 L~~~~~f~r~~G~~v~v~l~~~~~~~G~L~~~~~~~-i~l~~~~~~~~~~i~~~~I 131 (140)
T PRK14639 77 LSKIEHFAKSIGELVKITTNEKEKFEGKIVSVDDEN-ITLENLENKEKTTINFNDI 131 (140)
T ss_pred CCCHHHHHHhCCCEEEEEECCCcEEEEEEEEEeCCE-EEEEEccCCcEEEEEhHHe
Confidence 3344555567899999987 4677999999999854 44432 333 455655554
No 70
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=41.88 E-value=20 Score=24.43 Aligned_cols=17 Identities=29% Similarity=0.743 Sum_probs=14.3
Q ss_pred HHHHHHHHcCCccceeeCC
Q psy15214 105 ALSIALKKFGQKVQLKWPN 123 (265)
Q Consensus 105 av~~aL~~~~~~~~iKWPN 123 (265)
.+.++|++.| .+++|||
T Consensus 56 ~~~~~L~~~G--~~v~~~~ 72 (72)
T cd04883 56 PIIEDLRRAG--YEVLWPN 72 (72)
T ss_pred HHHHHHHHCC--CeeeCCC
Confidence 6778888888 6899998
No 71
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=39.36 E-value=46 Score=27.15 Aligned_cols=56 Identities=14% Similarity=0.186 Sum_probs=35.8
Q ss_pred ChHHHHHHHHHhcccCCCEEEEEE-----CCeEEEEEEEeECCCceEEEEeCCc--eEEEEeee
Q psy15214 202 GFSIFMKYWNFNHAYTNKTVDILK-----LNKIQKGIVIGINKNGCLLLNTKFG--KITISSGD 258 (265)
Q Consensus 202 ~~~~~~~~~~~~~~~~gk~V~v~~-----~~~~~~G~~~gI~~~G~L~l~~~~g--~~~~~~Ge 258 (265)
|...-+..-+++-.+.|+.|+|.. +.+.++|++..+++++ +.+...++ ..++.-.+
T Consensus 82 Gi~RpL~~~~~f~r~~G~~v~V~~~~~~~~~~~~~G~L~~~~~~~-i~l~~~~~~~~~~i~~~~ 144 (154)
T PRK00092 82 GLDRPLKKARDFRRFIGREVKVKLYEPIDGRKKFQGILLAVDGET-VTLEVEGKEKEVEIPLDN 144 (154)
T ss_pred CCCCcCCCHHHHHHhCCCeEEEEEEcccCCceEEEEEEEEeeCCE-EEEEECCCeEEEEEEHHH
Confidence 333333344555567899999974 3567899999999876 55555444 44454443
No 72
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [].; PDB: 1IB8_A.
Probab=39.07 E-value=35 Score=27.31 Aligned_cols=48 Identities=13% Similarity=0.087 Sum_probs=28.9
Q ss_pred ChHHHHHHHHHhcccCCCEEEEEE-----CCeEEEEEEEeECCCceEEEEeCCc
Q psy15214 202 GFSIFMKYWNFNHAYTNKTVDILK-----LNKIQKGIVIGINKNGCLLLNTKFG 250 (265)
Q Consensus 202 ~~~~~~~~~~~~~~~~gk~V~v~~-----~~~~~~G~~~gI~~~G~L~l~~~~g 250 (265)
|+..-+....++..+.|+.|.|.. +.+.++|++.++++ ..+.+...++
T Consensus 71 G~~r~L~~~~~~~~~iG~~v~v~~~~~~~~~~~~~G~L~~~~~-~~i~l~~~~~ 123 (141)
T PF02576_consen 71 GIDRPLKSPRDFERFIGRKVKVKLKQPVNGRKEFEGKLLEVDE-DEITLEVEGK 123 (141)
T ss_dssp SSSS--SSHHHHHHH-SEEEEEE-SS-SSS-SEEEEEEEEEET-TEEEEEEE-S
T ss_pred CCCCcCCCHHHHHHhcCCeEEEEEeccCCCcEEEEEEEEEEeC-CEEEEEECCc
Confidence 333334444555567899999997 24568999999999 4555554444
No 73
>PF12701 LSM14: Scd6-like Sm domain; PDB: 2RM4_A 2FB7_A 2VC8_A 2VXF_A 2VXE_A.
Probab=37.92 E-value=1.2e+02 Score=22.87 Aligned_cols=33 Identities=15% Similarity=0.402 Sum_probs=28.1
Q ss_pred cccCCCEEEEEEC-CeEEEEEEEeECC-CceEEEE
Q psy15214 214 HAYTNKTVDILKL-NKIQKGIVIGINK-NGCLLLN 246 (265)
Q Consensus 214 ~~~~gk~V~v~~~-~~~~~G~~~gI~~-~G~L~l~ 246 (265)
..++|+.|.+... +-.|+|++..||. ++.+-|+
T Consensus 4 ~~~IGs~ISlisk~~iRYeG~L~~Id~~~sTItL~ 38 (96)
T PF12701_consen 4 DPYIGSKISLISKSDIRYEGILYSIDTEDSTITLK 38 (96)
T ss_dssp CCCTTCEEEEEETTTEEEEEEEEEEETTTTEEEEE
T ss_pred ccccCCEEEEEECCCcEEEEEEEEEcCCCCEEEee
Confidence 4578999999887 6679999999998 7888775
No 74
>PRK14636 hypothetical protein; Provisional
Probab=37.72 E-value=51 Score=27.75 Aligned_cols=57 Identities=12% Similarity=0.164 Sum_probs=36.5
Q ss_pred ChHHHHHHHHHhcccCCCEEEEEEC-----CeEEEEEEEeECCCceEEEEeC-CceEEEEeeeE
Q psy15214 202 GFSIFMKYWNFNHAYTNKTVDILKL-----NKIQKGIVIGINKNGCLLLNTK-FGKITISSGDV 259 (265)
Q Consensus 202 ~~~~~~~~~~~~~~~~gk~V~v~~~-----~~~~~G~~~gI~~~G~L~l~~~-~g~~~~~~Gev 259 (265)
|...-+..-+++..+.|+.|+|... .+.++|++.++++++ +.+... ++..+|.-.+|
T Consensus 82 GldRpL~~~~df~r~~G~~V~V~l~~~~~g~k~~~G~L~~v~~~~-v~l~~~~~~~~~i~~~~I 144 (176)
T PRK14636 82 GIDRPLTRPKDFADWAGHEARIALSEPLDGRKQFRGELKGIDGDT-VTIADNKAGEVILPFAAI 144 (176)
T ss_pred CCCCCCCCHHHHHHhCCCeEEEEEecccCCeEEEEEEEEEEeCCE-EEEEEcCCcEEEEEhHHc
Confidence 3333333445556678999999752 457899999998855 555553 34555655544
No 75
>PRK09618 flgD flagellar basal body rod modification protein; Provisional
Probab=36.95 E-value=1e+02 Score=25.14 Aligned_cols=33 Identities=21% Similarity=0.198 Sum_probs=25.1
Q ss_pred HhcccCCCEEEEEEC-CeEEEEEEEeEC-CCceEE
Q psy15214 212 FNHAYTNKTVDILKL-NKIQKGIVIGIN-KNGCLL 244 (265)
Q Consensus 212 ~~~~~~gk~V~v~~~-~~~~~G~~~gI~-~~G~L~ 244 (265)
...-+.||.|.+..+ ++.++|++.+|. .+|.-.
T Consensus 86 ~a~slVGk~V~~~~~~g~~~tG~V~~V~~~~g~~~ 120 (142)
T PRK09618 86 KYSELIGKEVEWEGEDGEIVSGTVTSVKQKDGDYP 120 (142)
T ss_pred HHHHHhCCEEEEEeCCCCEEEEEEEEEEEcCCcEE
Confidence 345689999999655 567899999998 467543
No 76
>PF06372 Gemin6: Gemin6 protein; InterPro: IPR009422 This family consists of several mammalian Gemin6 proteins. The exact function of Gemin6 is unknown but it has been found to form part of the Survival of motor neuron complex. The SMN complex plays a key role in the biogenesis of spliceosomal small nuclear ribonucleoproteins (snRNPs) and other ribonucleoprotein particles [].; GO: 0000245 spliceosome assembly, 0005634 nucleus; PDB: 1Y96_A.
Probab=35.74 E-value=2e+02 Score=24.08 Aligned_cols=44 Identities=25% Similarity=0.385 Sum_probs=29.5
Q ss_pred ccCCCEEEEEECCeEEEEEEEeECC-CceEEEEe--CCc--eEEEEeee
Q psy15214 215 AYTNKTVDILKLNKIQKGIVIGINK-NGCLLLNT--KFG--KITISSGD 258 (265)
Q Consensus 215 ~~~gk~V~v~~~~~~~~G~~~gI~~-~G~L~l~~--~~g--~~~~~~Ge 258 (265)
.+.||+|+|...+..+.|.+..+|+ +.+++|-. ++| ..++..|.
T Consensus 14 ~yv~K~VkV~~~d~~~~G~v~TiDPVS~siVL~~~~e~~~~sv~~I~gh 62 (166)
T PF06372_consen 14 DYVGKEVKVTLSDKEYKGWVYTIDPVSASIVLVNFQEDGKRSVKVIMGH 62 (166)
T ss_dssp CTTT-EEEEEETTEEEEEEEEEE-TTT--EEEEEE-TTS-EEEEEE-GG
T ss_pred HhhCcEEEEEEeccEEEEEEEEeCCCCCeEEEEEcccCCceeEEEEEcc
Confidence 4679999999888889999999999 88888752 334 33455554
No 77
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=34.32 E-value=1.5e+02 Score=20.11 Aligned_cols=45 Identities=11% Similarity=0.111 Sum_probs=32.2
Q ss_pred ccCCCEEEEEECC--eEEEEEEEeECC-CceEEEEeCCc-eEEEEeeeE
Q psy15214 215 AYTNKTVDILKLN--KIQKGIVIGINK-NGCLLLNTKFG-KITISSGDV 259 (265)
Q Consensus 215 ~~~gk~V~v~~~~--~~~~G~~~gI~~-~G~L~l~~~~g-~~~~~~Gev 259 (265)
+-.|+.|.+.-++ -.++|++.++|. +..-.|.-++| ...+--+||
T Consensus 6 ~~~Ge~V~~rWP~s~lYYe~kV~~~d~~~~~y~V~Y~DGtel~lke~di 54 (55)
T PF09465_consen 6 FAIGEVVMVRWPGSSLYYEGKVLSYDSKSDRYTVLYEDGTELELKENDI 54 (55)
T ss_dssp S-SS-EEEEE-TTTS-EEEEEEEEEETTTTEEEEEETTS-EEEEECCCE
T ss_pred ccCCCEEEEECCCCCcEEEEEEEEecccCceEEEEEcCCCEEEeccccc
Confidence 3479999999884 447999999999 55566777888 777777776
No 78
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Probab=32.78 E-value=71 Score=31.00 Aligned_cols=83 Identities=17% Similarity=0.076 Sum_probs=52.0
Q ss_pred EEEEcccccH-------HHHHHHHhhcCC-CCCCeEEEeCcccCCCCCCCCeeeeC--------------CCCceEEEEe
Q psy15214 28 IRTILSTNST-------NSNLLSIANTGL-LFHPTFLATKIQTAGRGRAGRIWYSE--------------PEITLTFSLA 85 (265)
Q Consensus 28 i~~~~~v~ST-------n~~a~~~~~~~~-~~~~~vv~A~~QT~GrGR~gr~W~Sp--------------~g~~L~~S~~ 85 (265)
-.+.+.+-+. -.+++ +..+- .+++.++++|+=-.|-||.|+-|-.. -|.++-+|.+
T Consensus 225 aiI~EpIQgegG~~v~p~~fl~--~l~~~~~~~gillI~DEVQtG~GRTG~~fa~E~~gv~PDivt~aK~ig~G~Pl~av 302 (447)
T COG0160 225 AIIIEPIQGEGGIIVPPKGFLK--ALRKLCREHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVTLAKSLGGGLPLSAV 302 (447)
T ss_pred EEEEecccCCCCCcCCCHHHHH--HHHHHHHHcCCEEEEeccccCCCccccchhhhhcCCCCCEEEecccccCCCceeEE
Confidence 5555655553 23444 32211 57899999999999999999555322 2335666766
Q ss_pred eecCcCc-----c-----ccCchHHHHHHHHHHHHHH
Q psy15214 86 WKFKISL-----K-----YLTSLPLVISIALSIALKK 112 (265)
Q Consensus 86 ~~~~~~~-----~-----~~~~l~l~~alav~~aL~~ 112 (265)
+-.+.-+ . .-..++.++|+|+.+.+++
T Consensus 303 v~r~ei~~~~~g~~~~Tf~GNpva~Aaa~AvL~vie~ 339 (447)
T COG0160 303 VGRAEIMDWPPGGHGGTFGGNPVACAAALAVLDVIEE 339 (447)
T ss_pred eccHHhcccCCcccCCCCCcCHHHHHHHHHHHHHHHH
Confidence 6432211 1 1124789999999998874
No 79
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.42 E-value=1.9e+02 Score=23.73 Aligned_cols=46 Identities=11% Similarity=0.138 Sum_probs=32.6
Q ss_pred HHHHhcccCCCEEEEEE-----CCeEEEEEEEeECCCceEEEEeCCceEEEE
Q psy15214 209 YWNFNHAYTNKTVDILK-----LNKIQKGIVIGINKNGCLLLNTKFGKITIS 255 (265)
Q Consensus 209 ~~~~~~~~~gk~V~v~~-----~~~~~~G~~~gI~~~G~L~l~~~~g~~~~~ 255 (265)
.-.++..+.|+.|.+.. +.+.++|++.+++.+- +.+..++....+.
T Consensus 90 ~~~~f~r~~G~~Vkv~l~~~~~~~k~~~G~i~~~d~~~-v~~~~~~k~v~Ip 140 (153)
T COG0779 90 TAEHFARFIGEKVKVKLRLPIEGRKKFEGKIVAVDGET-VTLEVDGKEVEIP 140 (153)
T ss_pred CHHHHHHhcCcEEEEEEecccCCceEEEEEEEEEcCCe-EEEEECCEEEEEE
Confidence 34455567899999987 4677899999999976 5555444444443
No 80
>PRK14634 hypothetical protein; Provisional
Probab=31.70 E-value=1.9e+02 Score=23.75 Aligned_cols=52 Identities=13% Similarity=0.119 Sum_probs=34.8
Q ss_pred HHHHHhcccCCCEEEEEEC-----CeEEEEEEEeECCCceEEEEeCCceEEEEeeeEE
Q psy15214 208 KYWNFNHAYTNKTVDILKL-----NKIQKGIVIGINKNGCLLLNTKFGKITISSGDVS 260 (265)
Q Consensus 208 ~~~~~~~~~~gk~V~v~~~-----~~~~~G~~~gI~~~G~L~l~~~~g~~~~~~Gev~ 260 (265)
..-.++..+.|+.|+|... .+.++|++.+++++ .+.+..+++...|.-.+|.
T Consensus 90 ~~~~~f~r~~G~~V~V~l~~~~~~~k~~~G~L~~~~~~-~v~l~~~~~~~~i~~~~I~ 146 (155)
T PRK14634 90 SSDRDFQTFRGFPVEVSHRDDDGSEQRLEGLLLERNED-HLQINIRGRIKRIPRDSVI 146 (155)
T ss_pred CCHHHHHHhCCCeEEEEEecCCCCeEEEEEEEEEEeCC-EEEEEECCEEEEEEHHHee
Confidence 3344555678999999752 35689999999875 4555555446666655553
No 81
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=30.88 E-value=1.4e+02 Score=18.56 Aligned_cols=37 Identities=11% Similarity=0.073 Sum_probs=25.6
Q ss_pred CEEEEEEC--CeEEEEEEEeECCCceEEEEe-CCc-eEEEE
Q psy15214 219 KTVDILKL--NKIQKGIVIGINKNGCLLLNT-KFG-KITIS 255 (265)
Q Consensus 219 k~V~v~~~--~~~~~G~~~gI~~~G~L~l~~-~~g-~~~~~ 255 (265)
..+..... +..++|++.++++++...|.- +-| ...+.
T Consensus 2 ~~c~a~~~~d~~wyra~V~~~~~~~~~~V~f~DyG~~~~v~ 42 (48)
T cd04508 2 DLCLAKYSDDGKWYRAKITSILSDGKVEVFFVDYGNTEVVP 42 (48)
T ss_pred CEEEEEECCCCeEEEEEEEEECCCCcEEEEEEcCCCcEEEe
Confidence 34444443 788999999999888888874 436 44444
No 82
>PRK14647 hypothetical protein; Provisional
Probab=30.60 E-value=85 Score=25.83 Aligned_cols=58 Identities=17% Similarity=0.182 Sum_probs=36.5
Q ss_pred cChHHHHHHHHHhcccCCCEEEEEE----------CCeEEEEEEEeECCCceEEEEeCCc-eEEEEeeeE
Q psy15214 201 YGFSIFMKYWNFNHAYTNKTVDILK----------LNKIQKGIVIGINKNGCLLLNTKFG-KITISSGDV 259 (265)
Q Consensus 201 ~~~~~~~~~~~~~~~~~gk~V~v~~----------~~~~~~G~~~gI~~~G~L~l~~~~g-~~~~~~Gev 259 (265)
-|...-+..-+++..+.|+.|.|.. +.+.++|++.+++++ .+.+...++ ..++.-.+|
T Consensus 82 PG~~RpL~~~~~f~r~~G~~v~V~l~~~~~~~~~~~~~~~~G~L~~~~~~-~v~l~~~~~~~~~i~~~~I 150 (159)
T PRK14647 82 PGLDRPLKKEADYERYAGRLVKVRTFELLADEAGNKRKTFLGELEGLADG-VVTIALKEGQQARIPLDKI 150 (159)
T ss_pred CCCCCcCCCHHHHHHhCCcEEEEEEeccccccccCCceEEEEEEEeecCC-EEEEEEcCCcEEEEEHHHC
Confidence 3444334445566678999999975 246789999999874 555554333 455554443
No 83
>cd01718 Sm_E The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit E binds subunits F and G to form a trimer which then assembles onto snRNA along with the D1/D2 and D3/B heterodimers forming a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=29.90 E-value=2.1e+02 Score=20.76 Aligned_cols=44 Identities=23% Similarity=0.311 Sum_probs=29.2
Q ss_pred EEEEE---ECCeEEEEEEEeECCCceEEEEeCCc-----eEEEEeeeEEEee
Q psy15214 220 TVDIL---KLNKIQKGIVIGINKNGCLLLNTKFG-----KITISSGDVSLRL 263 (265)
Q Consensus 220 ~V~v~---~~~~~~~G~~~gI~~~G~L~l~~~~g-----~~~~~~Gev~l~~ 263 (265)
+|.+. .++..+.|+..|+|.-=.|++.+... .....-|.+.+|.
T Consensus 20 ~V~V~l~~~~g~~~~G~L~gfD~~mNlvL~d~~E~~~~~~~~~~lG~iliRG 71 (79)
T cd01718 20 RVQIWLYEQTDLRIEGVIIGFDEYMNLVLDDAEEVHLKTKTRKPLGRILLKG 71 (79)
T ss_pred EEEEEEEeCCCcEEEEEEEEEccceeEEEcCEEEEecCCceEeEcCcEEEeC
Confidence 55553 25777999999999999999975422 1223346666653
No 84
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=27.91 E-value=77 Score=22.30 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=19.8
Q ss_pred CceEEEEeCCc-eEEEEeeeEEEeec
Q psy15214 240 NGCLLLNTKFG-KITISSGDVSLRLK 264 (265)
Q Consensus 240 ~G~L~l~~~~g-~~~~~~Gev~l~~~ 264 (265)
+|+..|..++| .+++.+||+.+-++
T Consensus 33 eG~v~it~~~G~~~~~~aGD~~~~p~ 58 (74)
T PF05899_consen 33 EGEVTITDEDGETVTFKAGDAFFLPK 58 (74)
T ss_dssp EEEEEEEETTTEEEEEETTEEEEE-T
T ss_pred EeEEEEEECCCCEEEEcCCcEEEECC
Confidence 58888888888 78999999876553
No 85
>cd01730 LSm3 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm3 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=27.45 E-value=1.5e+02 Score=21.39 Aligned_cols=31 Identities=10% Similarity=0.161 Sum_probs=26.4
Q ss_pred CCCEEEEEEC-CeEEEEEEEeECCCceEEEEe
Q psy15214 217 TNKTVDILKL-NKIQKGIVIGINKNGCLLLNT 247 (265)
Q Consensus 217 ~gk~V~v~~~-~~~~~G~~~gI~~~G~L~l~~ 247 (265)
++++|.|... +..+.|++.|.|.-=.|++.+
T Consensus 10 ~~k~V~V~l~~gr~~~G~L~~fD~~mNlvL~d 41 (82)
T cd01730 10 LDERVYVKLRGDRELRGRLHAYDQHLNMILGD 41 (82)
T ss_pred CCCEEEEEECCCCEEEEEEEEEccceEEeccc
Confidence 7899999765 677999999999998998853
No 86
>PRK04950 ProP expression regulator; Provisional
Probab=27.04 E-value=96 Score=26.99 Aligned_cols=41 Identities=12% Similarity=0.212 Sum_probs=33.0
Q ss_pred cCCCEEEEEECCeEEEEEEEeECCCceEEEEeCCc-eEEEEee
Q psy15214 216 YTNKTVDILKLNKIQKGIVIGINKNGCLLLNTKFG-KITISSG 257 (265)
Q Consensus 216 ~~gk~V~v~~~~~~~~G~~~gI~~~G~L~l~~~~g-~~~~~~G 257 (265)
-.|+.|.|..+.....|+++.|+.|| ..|+.++| ...+...
T Consensus 168 ~~gq~v~vk~g~~~~~a~i~ei~kd~-v~vql~~Gl~~~v~ae 209 (213)
T PRK04950 168 TVGQAVKVKAGKSAMDATVLEITKDD-VRVQLDSGLSMIVRAE 209 (213)
T ss_pred ccCCEEEEeccCCCCceEEEEEecCc-EEEEcCCCcEEEEeHh
Confidence 46999999999999999999999976 56778888 4555443
No 87
>TIGR00008 infA translation initiation factor IF-1. This family consists of translation initiation factor IF-1 as found in bacteria and chloroplasts. This protein, about 70 residues in length, consists largely of an S1 RNA binding domain (pfam00575).
Probab=26.68 E-value=2.1e+02 Score=20.16 Aligned_cols=31 Identities=19% Similarity=0.222 Sum_probs=25.4
Q ss_pred EEEEEEeECCCceEEEEeCCc--eEEEEeeeEE
Q psy15214 230 QKGIVIGINKNGCLLLNTKFG--KITISSGDVS 260 (265)
Q Consensus 230 ~~G~~~gI~~~G~L~l~~~~g--~~~~~~Gev~ 260 (265)
.+|.+...-+++...|+.++| .....+|-+.
T Consensus 7 ~~G~V~e~L~~~~f~V~l~ng~~vla~i~GKmr 39 (68)
T TIGR00008 7 MEGKVTESLPNAMFRVELENGHEVLAHISGKIR 39 (68)
T ss_pred EEEEEEEECCCCEEEEEECCCCEEEEEecCcch
Confidence 579999999999999999888 4567777543
No 88
>PF13861 FLgD_tudor: FlgD Tudor-like domain; PDB: 3OSV_A 3C12_A.
Probab=25.94 E-value=2.1e+02 Score=19.18 Aligned_cols=47 Identities=23% Similarity=0.198 Sum_probs=31.3
Q ss_pred HhcccCCCEEEEEEC---CeEEEEEEEeECC-CceEEEEeCCceEEEEeee
Q psy15214 212 FNHAYTNKTVDILKL---NKIQKGIVIGINK-NGCLLLNTKFGKITISSGD 258 (265)
Q Consensus 212 ~~~~~~gk~V~v~~~---~~~~~G~~~gI~~-~G~L~l~~~~g~~~~~~Ge 258 (265)
+..-++||.|.+... .....|++.+++- +|...|+.+++...+.-.+
T Consensus 6 qa~~lIGk~V~~~~~~~~~~~~~g~V~sV~~~~g~~~L~l~~~~~~v~l~~ 56 (61)
T PF13861_consen 6 QAASLIGKEVLVPKSVAATTLVSGRVESVTFSGGGPMLNLGGGGSTVPLSD 56 (61)
T ss_dssp HTTCTTTSEEEEEEEEEE-EEEEEEEEEEEEETTEEEEEETTTCEEEECCC
T ss_pred HHHHhcCCEEEECCcEeeeeEEEEEEEEEEEcCCeEEEEEecCCcEEEHHH
Confidence 345689999999743 4446788888776 7788888766544444433
No 89
>PF14427 Pput2613-deam: Pput_2613-like deaminase
Probab=25.90 E-value=60 Score=25.30 Aligned_cols=20 Identities=40% Similarity=0.720 Sum_probs=14.4
Q ss_pred HcCCccceeeCCc----EEEcCee
Q psy15214 112 KFGQKVQLKWPND----LLLNGNK 131 (265)
Q Consensus 112 ~~~~~~~iKWPND----I~~~~~K 131 (265)
+.+..+..+|||| +|.+++|
T Consensus 91 ~~g~~I~Y~w~~~~~~~~w~~g~~ 114 (118)
T PF14427_consen 91 KSGATIQYTWPNGGGKEEWKAGKK 114 (118)
T ss_pred ccCcEEEEecCCCCCceeeecCCc
Confidence 4577899999998 5555543
No 90
>cd04479 RPA3 RPA3: A subfamily of OB folds similar to human RPA3 (also called RPA14). RPA3 is the smallest subunit of Replication protein A (RPA). RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA3 is believed to have a structural role in assembly of the RPA heterotrimer.
Probab=25.68 E-value=2.2e+02 Score=21.38 Aligned_cols=28 Identities=32% Similarity=0.455 Sum_probs=20.7
Q ss_pred ccCCCEEEEEECCeEEEEEEEeECCCceEEEEeCCc
Q psy15214 215 AYTNKTVDILKLNKIQKGIVIGINKNGCLLLNTKFG 250 (265)
Q Consensus 215 ~~~gk~V~v~~~~~~~~G~~~gI~~~G~L~l~~~~g 250 (265)
.+.||.|++. |++..++.+ .+.+++.+|
T Consensus 12 ~f~gk~V~iv-------GkV~~~~~~-~~~~~~~Dg 39 (101)
T cd04479 12 QFVGKTVRIV-------GKVEKVDGD-SLTLISSDG 39 (101)
T ss_pred hhCCCEEEEE-------EEEEEecCC-eEEEEcCCC
Confidence 4679999986 788888776 566666665
No 91
>PRK11911 flgD flagellar basal body rod modification protein; Provisional
Probab=25.57 E-value=2.2e+02 Score=23.09 Aligned_cols=37 Identities=16% Similarity=0.272 Sum_probs=24.9
Q ss_pred hcccCCCEEEEEEC-CeEEEEEEEeECC-CceEEEEeCC
Q psy15214 213 NHAYTNKTVDILKL-NKIQKGIVIGINK-NGCLLLNTKF 249 (265)
Q Consensus 213 ~~~~~gk~V~v~~~-~~~~~G~~~gI~~-~G~L~l~~~~ 249 (265)
...++||.|..... +..++|++.+|.. ++...+...+
T Consensus 88 a~~lIGk~V~~~~~~g~~~tG~V~sV~~~~~~~~~~v~d 126 (140)
T PRK11911 88 AVNFIGKDIKGVSLNGEVISGKVESVQQTTNGVMLKLKD 126 (140)
T ss_pred HHHhhCceeEEEecCCCEEEEEEEEEEEcCCceEEEEEc
Confidence 34589999986544 5568999998875 2455554434
No 92
>COG5414 TATA-binding protein-associated factor [Transcription]
Probab=25.53 E-value=74 Score=29.10 Aligned_cols=34 Identities=21% Similarity=0.205 Sum_probs=26.0
Q ss_pred HHHHHHH-cCCccceeeCCc----EEEcCeeEEEEEEEe
Q psy15214 106 LSIALKK-FGQKVQLKWPND----LLLNGNKFCGILIDT 139 (265)
Q Consensus 106 v~~aL~~-~~~~~~iKWPND----I~~~~~Ki~GIL~E~ 139 (265)
|.+++++ -+..+.|||-|| +-+|++|-++||+..
T Consensus 89 V~~~~esG~~s~I~ik~kd~R~aVvt~N~~~Y~ailVdL 127 (392)
T COG5414 89 VVDLGESGDYSGITIKIKDDRSAVVTHNNKKYPAILVDL 127 (392)
T ss_pred HHHHhhcCCccCceEEeccCceEEEEECCcccceeEeec
Confidence 4455554 134899999998 557999999999974
No 93
>PRK12442 translation initiation factor IF-1; Reviewed
Probab=25.10 E-value=2.6e+02 Score=20.81 Aligned_cols=32 Identities=19% Similarity=0.172 Sum_probs=26.4
Q ss_pred EEEEEEeECCCceEEEEeCCc--eEEEEeeeEEE
Q psy15214 230 QKGIVIGINKNGCLLLNTKFG--KITISSGDVSL 261 (265)
Q Consensus 230 ~~G~~~gI~~~G~L~l~~~~g--~~~~~~Gev~l 261 (265)
++|++..+-+++...|+.++| +....+|-+..
T Consensus 9 ~~G~V~e~Lp~~~frV~LenG~~vla~isGKmR~ 42 (87)
T PRK12442 9 LDGIVDEVLPDSRFRVTLENGVEVGAYASGRMRK 42 (87)
T ss_pred EEEEEEEECCCCEEEEEeCCCCEEEEEeccceee
Confidence 579999999999999998888 56777877654
No 94
>PF08661 Rep_fac-A_3: Replication factor A protein 3; InterPro: IPR013970 Replication factor A is involved in eukaryotic DNA replication, recombination and repair. ; PDB: 2PI2_H 1L1O_D 3KDF_A 2Z6K_D 1QUQ_D 2PQA_D.
Probab=22.42 E-value=3.5e+02 Score=20.41 Aligned_cols=33 Identities=33% Similarity=0.570 Sum_probs=21.5
Q ss_pred ccCCCEEEEEECCeEEEEEEEeECCC-ceEEEEeCCc-eEEE
Q psy15214 215 AYTNKTVDILKLNKIQKGIVIGINKN-GCLLLNTKFG-KITI 254 (265)
Q Consensus 215 ~~~gk~V~v~~~~~~~~G~~~gI~~~-G~L~l~~~~g-~~~~ 254 (265)
.+.||.|++. |++..++++ +.+.+++.+| ..++
T Consensus 15 ~~~gk~Vriv-------Gkv~~~~~~g~~~~l~~~d~~~V~v 49 (109)
T PF08661_consen 15 QFVGKTVRIV-------GKVESVDPDGGSATLSTSDGGQVTV 49 (109)
T ss_dssp GGTTSEEEEE-------EEEEEE-TTSSEEEEE-TTS-EEEE
T ss_pred hhCCCeEEEE-------EEEeeEcCCCCEEEEEcCCCCEEEE
Confidence 4689999996 899999954 4555565555 4433
No 95
>PRK06792 flgD flagellar basal body rod modification protein; Validated
Probab=21.99 E-value=2.4e+02 Score=24.09 Aligned_cols=38 Identities=18% Similarity=0.087 Sum_probs=27.4
Q ss_pred hcccCCCEEEEEEC-CeEEEEEEEeEC--CCceEEEEeCCc
Q psy15214 213 NHAYTNKTVDILKL-NKIQKGIVIGIN--KNGCLLLNTKFG 250 (265)
Q Consensus 213 ~~~~~gk~V~v~~~-~~~~~G~~~gI~--~~G~L~l~~~~g 250 (265)
...++||.|.+... +..+.|++..+. ++|...+..++.
T Consensus 113 a~slIGK~V~~~~~dG~~vtG~V~sV~~~~~g~v~l~vdg~ 153 (190)
T PRK06792 113 GMKFLGKYVRGVSNDGKQVTGQVETVRLAENNDVQLIVDNQ 153 (190)
T ss_pred HHHhcCcEEEEEcCCCCEEEEEEEEEEEccCCcEEEEECCE
Confidence 34589999998665 456899988775 567777666653
No 96
>TIGR02383 Hfq RNA chaperone Hfq. This model represents the RNA-binding pleiotropic regulator Hfq, a small, Sm-like protein of bacteria. It helps pair regulatory noncoding RNAs with complementary mRNA target regions. It enhances the elongation of poly(A) tails on mRNA. It appears also to protect RNase E recognition sites (A/U-rich sequences with adjacent stem-loop structures) from cleavage. Being pleiotropic, it differs in some of its activities in different species. Hfq binds the non-coding regulatory RNA DsrA (see Rfam RF00014) in the few species known to have it: Escherichia coli, Shigella flexneri, Salmonella spp. In Azorhizobium caulinodans, an hfq mutant is unable to express nifA, and Hfq is called NrfA, for nif regulatory factor (see PubMed:8197116). The name hfq reflects phenomenology as a host factor for phage Q-beta RNA replication.
Probab=21.78 E-value=2.8e+02 Score=19.16 Aligned_cols=50 Identities=12% Similarity=0.099 Sum_probs=32.4
Q ss_pred HHHHhcccCCCEEEEEEC-CeEEEEEEEeECCCceEEEEeCCceEEEEeeeE
Q psy15214 209 YWNFNHAYTNKTVDILKL-NKIQKGIVIGINKNGCLLLNTKFGKITISSGDV 259 (265)
Q Consensus 209 ~~~~~~~~~gk~V~v~~~-~~~~~G~~~gI~~~G~L~l~~~~g~~~~~~Gev 259 (265)
.+...+.-...+|++..- |-.+.|.+.+.|. -.++++.++...-+|-=-|
T Consensus 6 ~fln~~r~~~~~Vti~L~nG~~l~G~I~~fD~-ftVll~~~g~qqLIYKhAI 56 (61)
T TIGR02383 6 QFLNTLRKERIPVTVFLVNGVQLKGVIESFDN-FTVLLESQGKQQLIYKHAI 56 (61)
T ss_pred HHHHHHHHcCCcEEEEEeCCcEEEEEEEEEee-eEEEEEECCcEEEEEEEEE
Confidence 344444446778888765 5568999999997 5666666555544544333
No 97
>PRK02001 hypothetical protein; Validated
Probab=21.66 E-value=3.6e+02 Score=22.06 Aligned_cols=43 Identities=16% Similarity=0.191 Sum_probs=30.3
Q ss_pred ChHHHHHHHHHhcccCCCEEEEEEC-CeEEEEEEEeECCCceEE
Q psy15214 202 GFSIFMKYWNFNHAYTNKTVDILKL-NKIQKGIVIGINKNGCLL 244 (265)
Q Consensus 202 ~~~~~~~~~~~~~~~~gk~V~v~~~-~~~~~G~~~gI~~~G~L~ 244 (265)
|...-+..-.++-.+.|+.|+|... ++.++|++.++++++-.+
T Consensus 74 GldRpL~~~~~f~r~~G~~v~V~l~~~~~~~G~L~~~~~~~i~l 117 (152)
T PRK02001 74 GLTSPLKVPRQYKKNIGRELEVLTKNGKKIEGELKSADENDITL 117 (152)
T ss_pred CCCCcCCCHHHHHHhCCCEEEEEECCCCEEEEEEEEEeCCEEEE
Confidence 3333344445555678999999874 677999999999876443
No 98
>PF09342 DUF1986: Domain of unknown function (DUF1986); InterPro: IPR015420 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found in serine endopeptidases belonging to MEROPS peptidase family S1A (clan PA). It is found in unusual mosaic proteins, which are encoded by the Drosophila nudel gene (see P98159 from SWISSPROT). Nudel is involved in defining embryonic dorsoventral polarity. Three proteases; ndl, gd and snk process easter to create active easter. Active easter defines cell identities along the dorsal-ventral continuum by activating the spz ligand for the Tl receptor in the ventral region of the embryo. Nudel, pipe and windbeutel together trigger the protease cascade within the extraembryonic perivitelline compartment which induces dorsoventral polarity of the Drosophila embryo [].
Probab=20.92 E-value=1.6e+02 Score=26.38 Aligned_cols=33 Identities=21% Similarity=0.560 Sum_probs=24.3
Q ss_pred HHHHHcCCccceeeCCcEEEcCe-eEEEEEEEee
Q psy15214 108 IALKKFGQKVQLKWPNDLLLNGN-KFCGILIDTC 140 (265)
Q Consensus 108 ~aL~~~~~~~~iKWPNDI~~~~~-Ki~GIL~E~~ 140 (265)
|.+.+++-+...-|=-|||+||+ .+.|+|++..
T Consensus 5 ei~~~~~e~y~WPWlA~IYvdG~~~CsgvLlD~~ 38 (267)
T PF09342_consen 5 EIVDRFDEDYHWPWLADIYVDGRYWCSGVLLDPH 38 (267)
T ss_pred hHHHhcCccccCcceeeEEEcCeEEEEEEEeccc
Confidence 34445555566667799999997 7889999865
No 99
>cd01716 Hfq Hfq, an abundant, ubiquitous RNA-binding protein, functions as a pleiotrophic regulator of RNA metabolism in prokaryotes, required for transcription of some transcripts and degradation of others. Hfq binds small RNA molecules called riboregulators that modulate the stability or translation efficiency of RNA transcripts. Hfq binds preferentially to unstructured A/U-rich RNA sequences and is similar to the eukaryotic Sm proteins in both sequence and structure. Hfq forms a homo-hexameric ring similar to the heptameric ring of the Sm proteins.
Probab=20.89 E-value=2.9e+02 Score=19.04 Aligned_cols=43 Identities=16% Similarity=0.138 Sum_probs=29.0
Q ss_pred CCCEEEEEEC-CeEEEEEEEeECCCceEEEEeCCceEEEEeeeEE
Q psy15214 217 TNKTVDILKL-NKIQKGIVIGINKNGCLLLNTKFGKITISSGDVS 260 (265)
Q Consensus 217 ~gk~V~v~~~-~~~~~G~~~gI~~~G~L~l~~~~g~~~~~~Gev~ 260 (265)
...+|++..- |-.++|.+.+.|. -.++++.++...-+|-=.||
T Consensus 10 ~~~~Vtv~L~NG~~l~G~I~~fD~-ftVll~~~g~qqLIYKhAIS 53 (61)
T cd01716 10 EKIPVTIYLVNGVQLKGQIESFDN-FTVLLESDGKQQLVYKHAIS 53 (61)
T ss_pred cCCcEEEEEeCCcEEEEEEEEEcc-eEEEEEECCcEEEEEeeeeE
Confidence 5677888765 5668999999998 56666665545445544343
No 100
>PF05614 DUF782: Circovirus protein of unknown function (DUF782); InterPro: IPR008500 This family consists of porcine and bovine circovirus ORF3 proteins of unknown function.
Probab=20.58 E-value=46 Score=24.19 Aligned_cols=10 Identities=40% Similarity=1.185 Sum_probs=7.6
Q ss_pred eeeC-CcEEEc
Q psy15214 119 LKWP-NDLLLN 128 (265)
Q Consensus 119 iKWP-NDI~~~ 128 (265)
-+|| ||+|+.
T Consensus 31 prwphndvyir 41 (104)
T PF05614_consen 31 PRWPHNDVYIR 41 (104)
T ss_pred CCCCCCceEEc
Confidence 4788 888874
No 101
>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....
Probab=20.35 E-value=50 Score=30.38 Aligned_cols=76 Identities=20% Similarity=0.114 Sum_probs=48.1
Q ss_pred HHHHHHHHhhcCC-CCCCeEEEeCcccCCCCCCCCeeeeC--------------CCCceEEEEeeecCcCcc--------
Q psy15214 37 TNSNLLSIANTGL-LFHPTFLATKIQTAGRGRAGRIWYSE--------------PEITLTFSLAWKFKISLK-------- 93 (265)
Q Consensus 37 Tn~~a~~~~~~~~-~~~~~vv~A~~QT~GrGR~gr~W~Sp--------------~g~~L~~S~~~~~~~~~~-------- 93 (265)
+-++++ .+.+- .+++.++++|+-..|-||.|.-|.+. -+.++-+|.++-.+....
T Consensus 196 ~~~~l~--~l~~lc~~~gillI~DEV~tG~gRtG~~~a~~~~gv~PDiv~~gK~l~gG~p~sav~~~~~i~~~~~~~~~~ 273 (339)
T PF00202_consen 196 PPEYLR--ELRELCREHGILLIADEVQTGFGRTGKFFASEHYGVDPDIVTFGKGLGGGLPISAVLGSEEIMEAFQPGSHG 273 (339)
T ss_dssp -TTHHH--HHHHHHHHTT-EEEEEETTTTTTTTSSSSGHHHHTSSSSEEEEEGGGGTTSSEEEEEEEHHHHTTSCTTSST
T ss_pred ccchhh--ehcccccccccceecccccccccccCCccceecccccCcccccccchhhhhhcccccccchhhccccccccc
Confidence 345655 32222 57899999999999999999987332 122466777765332111
Q ss_pred c---cCchHHHHHHHHHHHHHHcC
Q psy15214 94 Y---LTSLPLVISIALSIALKKFG 114 (265)
Q Consensus 94 ~---~~~l~l~~alav~~aL~~~~ 114 (265)
. ...+++++|+++.+.+++.+
T Consensus 274 ~T~~g~p~~~aaa~~~l~~~~~~~ 297 (339)
T PF00202_consen 274 STFGGNPLSCAAALATLEILEEED 297 (339)
T ss_dssp CTTTT-HHHHHHHHHHHHHHHHTT
T ss_pred cccccchHhhhhhhhHHHhhccHH
Confidence 1 23478888999888888643
Done!