Query psy15214
Match_columns 265
No_of_seqs 114 out of 1086
Neff 7.4
Searched_HMMs 29240
Date Fri Aug 16 23:36:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15214.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15214hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rkx_A Biotin-[acetyl-COA-carb 100.0 4.3E-65 1.5E-69 465.7 28.9 252 6-261 65-323 (323)
2 1bia_A BIRA bifunctional prote 100.0 5.7E-64 1.9E-68 458.2 28.0 250 6-264 65-319 (321)
3 2eay_A Biotin [acetyl-COA-carb 100.0 8.6E-64 2.9E-68 438.0 23.8 225 26-263 3-232 (233)
4 3rux_A BIRA bifunctional prote 100.0 2.7E-63 9.1E-68 443.4 25.1 247 6-261 13-268 (270)
5 2dxu_A Biotin--[acetyl-COA-car 100.0 3.7E-63 1.3E-67 434.4 23.9 222 25-263 10-234 (235)
6 2ej9_A Putative biotin ligase; 100.0 2.3E-62 7.8E-67 430.0 24.8 221 27-262 2-236 (237)
7 3bfm_A Biotin protein ligase-l 100.0 2.4E-51 8.3E-56 359.5 24.7 213 24-260 10-232 (235)
8 2qhs_A Lipoyltransferase; glob 98.8 1E-07 3.4E-12 82.9 12.8 120 66-195 94-225 (237)
9 1w66_A Lipoyltransferase; lipo 98.1 5.2E-05 1.8E-09 65.5 12.7 124 65-195 76-213 (232)
10 2p0l_A Lipoate-protein ligase 97.7 0.00022 7.6E-09 63.3 11.2 144 65-215 87-270 (288)
11 1vqz_A Lipoate-protein ligase, 97.7 0.0012 4.3E-08 59.9 15.5 122 65-195 80-221 (341)
12 2c8m_A Lipoate-protein ligase 97.6 0.00085 2.9E-08 58.6 12.6 122 67-196 74-223 (262)
13 2p5i_A BH3822 protein; PFAM030 97.5 0.0007 2.4E-08 60.0 10.5 123 65-194 90-246 (288)
14 3a7r_A Lipoate-protein ligase 97.3 0.0077 2.6E-07 54.5 15.9 119 66-196 71-212 (337)
15 2e5a_A Lipoyltransferase 1; li 96.6 0.019 6.5E-07 52.1 11.6 118 67-196 75-214 (347)
16 2ddz_A 190AA long hypothetical 95.6 0.17 5.8E-06 41.6 11.5 110 79-196 66-177 (190)
17 1h64_1 SnRNP SM-like protein; 87.3 4.1 0.00014 27.9 8.3 49 215-263 11-64 (75)
18 1d3b_B Protein (small nuclear 85.2 3.8 0.00013 29.3 7.4 35 213-247 9-44 (91)
19 4emk_B U6 snRNA-associated SM- 84.5 6.2 0.00021 27.1 8.0 49 215-263 11-64 (75)
20 1y96_A Gemin6, SIP2, GEM-assoc 84.0 5.2 0.00018 28.7 7.4 46 213-258 12-63 (86)
21 1i4k_A Putative snRNP SM-like 83.7 5 0.00017 27.6 7.3 49 215-263 11-64 (77)
22 1mgq_A SM-like protein; LSM, R 83.0 8.4 0.00029 27.0 8.3 48 216-263 23-75 (83)
23 1th7_A SnRNP-2, small nuclear 82.4 4.8 0.00016 28.1 6.8 49 215-263 16-69 (81)
24 1ljo_A Archaeal SM-like protei 81.8 8.7 0.0003 26.4 7.9 49 215-263 12-66 (77)
25 4emk_A U6 snRNA-associated SM- 81.5 7 0.00024 28.4 7.5 48 216-263 28-81 (94)
26 1d3b_A Protein (small nuclear 80.9 10 0.00034 26.1 7.9 48 215-263 12-65 (75)
27 4emh_A Probable U6 snRNA-assoc 80.7 7.5 0.00026 28.8 7.6 49 215-263 23-77 (105)
28 3pgw_B SM B; protein-RNA compl 80.5 2.7 9.3E-05 35.7 5.7 37 212-248 8-45 (231)
29 1i8f_A Putative snRNP SM-like 80.4 6.8 0.00023 27.3 7.0 49 215-263 18-70 (81)
30 3s6n_G Small nuclear ribonucle 78.9 5.2 0.00018 27.6 5.9 50 214-263 10-64 (76)
31 3s6n_F Small nuclear ribonucle 78.6 7.8 0.00027 27.5 6.9 48 216-263 14-66 (86)
32 1n9r_A SMF, small nuclear ribo 77.5 11 0.00036 27.2 7.4 51 213-263 26-82 (93)
33 3bw1_A SMX4 protein, U6 snRNA- 76.5 12 0.0004 27.1 7.5 35 214-248 16-51 (96)
34 4emk_C U6 snRNA-associated SM- 68.5 11 0.00037 28.3 5.7 39 210-248 25-64 (113)
35 4emg_A Probable U6 snRNA-assoc 64.4 18 0.00061 26.0 6.1 32 216-247 17-49 (93)
36 2y9a_D Small nuclear ribonucle 59.5 30 0.001 26.3 6.9 48 215-263 12-65 (126)
37 1b34_A Protein (small nuclear 57.8 31 0.0011 25.9 6.6 48 215-262 9-61 (119)
38 3qii_A PHD finger protein 20; 56.1 51 0.0018 23.4 7.3 52 212-263 19-72 (85)
39 1m5q_A SMAP3, small nuclear ri 55.7 19 0.00067 27.6 5.2 34 215-248 7-41 (130)
40 3p8d_A Medulloblastoma antigen 54.5 47 0.0016 22.4 7.3 49 215-263 7-57 (67)
41 3kdf_A Replication protein A 1 49.1 47 0.0016 25.0 6.4 33 215-254 19-53 (121)
42 3ahu_A Protein HFQ; SM-like mo 48.6 66 0.0022 22.4 6.7 54 206-260 11-65 (78)
43 1y96_B Gemin7, SIP3, GEM-assoc 45.7 50 0.0017 23.4 5.5 43 204-246 14-58 (85)
44 3s6n_E Small nuclear ribonucle 43.9 18 0.00062 26.0 3.1 39 225-263 38-81 (92)
45 2fwk_A U6 snRNA-associated SM- 43.3 21 0.00071 26.9 3.6 34 216-249 36-70 (121)
46 1ycy_A Conserved hypothetical 42.8 33 0.0011 23.0 3.9 29 216-244 14-43 (71)
47 1b34_B Protein (small nuclear 36.6 69 0.0023 23.8 5.5 32 217-248 38-70 (118)
48 2eqj_A Metal-response element- 35.3 1E+02 0.0035 20.7 6.2 37 215-251 14-52 (66)
49 2equ_A PHD finger protein 20-l 35.0 1.1E+02 0.0036 20.9 6.3 46 215-260 10-57 (74)
50 3fdr_A Tudor and KH domain-con 33.9 1.2E+02 0.004 21.1 7.5 47 214-260 27-77 (94)
51 2pi2_E Replication protein A 1 33.8 1.1E+02 0.0037 23.7 6.4 34 215-255 40-75 (142)
52 2qtx_A Uncharacterized protein 33.2 90 0.0031 21.3 5.1 49 210-259 17-66 (71)
53 2vc8_A Enhancer of mRNA-decapp 29.9 1.4E+02 0.0048 21.0 5.7 33 215-247 6-41 (84)
54 4gop_A Putative uncharacterize 27.9 1.4E+02 0.0047 22.0 5.9 32 214-253 14-46 (114)
55 1kq1_A HFQ, HOST factor for Q 25.1 1.7E+02 0.0059 20.1 7.1 48 207-255 8-56 (77)
56 3dlm_A Histone-lysine N-methyl 24.1 98 0.0033 25.7 4.7 49 215-263 159-208 (213)
No 1
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=100.00 E-value=4.3e-65 Score=465.66 Aligned_cols=252 Identities=21% Similarity=0.294 Sum_probs=216.2
Q ss_pred CCCCHHHHHhhhccCCCCCceeEEEEcccccHHHHHHHHhhcCCCCCCeEEEeCcccCCCCCCCCeeeeCCCCceEEEEe
Q psy15214 6 HSLNTSRIKNLYYNYNTDTKIDIRTILSTNSTNSNLLSIANTGLLFHPTFLATKIQTAGRGRAGRIWYSEPEITLTFSLA 85 (265)
Q Consensus 6 ~~l~~~~i~~~~~~~~~~~~~~i~~~~~v~STn~~a~~~~~~~~~~~~~vv~A~~QT~GrGR~gr~W~Sp~g~~L~~S~~ 85 (265)
+.|+++.|...|.+.. -+.+++++++++|||++|+ ......+++++|+|++||+||||+||+|+||+|+|||||++
T Consensus 65 ~~l~~~~i~~~l~~~~--~g~~i~~~~~~~STn~~a~--~~~~g~~~g~vv~A~~QTaGRGR~GR~W~Sp~G~~L~~S~~ 140 (323)
T 3rkx_A 65 DIWYQGIIDQYTKSSA--LFDFSEVYDSIDSTQLAAK--KSLVGNQSSFFILSDEQTKGRGRFNRHWSSSKGQGLWMSVV 140 (323)
T ss_dssp SSCCHHHHHHHHHTCS--SCSEEEEEEEESCHHHHHH--HHTTTCCCCEEEEEEEEC------------CTTCEEEEEEE
T ss_pred ccCCHHHHHhhccccc--CCceEEEEcCCCCHHHHHH--HHhcCCCCCEEEEECcccCCCCCCCCeeeCCCCCCEEEEEE
Confidence 6799999999884422 3456999999999999994 33333789999999999999999999999999999999999
Q ss_pred eecCcCccccCchHHHHHHHHHHHHHHc-CCccceeeCCcEEEcCeeEEEEEEEeeecCCCccEEEEEeccccCCCCC-C
Q psy15214 86 WKFKISLKYLTSLPLVISIALSIALKKF-GQKVQLKWPNDLLLNGNKFCGILIDTCIEKKNNNWAIIGIGLNLGLPRI-L 163 (265)
Q Consensus 86 ~~~~~~~~~~~~l~l~~alav~~aL~~~-~~~~~iKWPNDI~~~~~Ki~GIL~E~~~~~~~~~~~viGIGiNv~~~~~-~ 163 (265)
++|+.++..++.+++++|+||++||+++ +.+++||||||||++|||+||||+|...+.+...++||||||||++++. +
T Consensus 141 l~p~~~~~~~~~lsl~~avAv~~al~~~~~~~~~iKWPNDI~~~gkKl~GIL~E~~~~~~~~~~vViGIGiNv~~~~~~~ 220 (323)
T 3rkx_A 141 LRPNVAFSMISKFNLFIALGIRDAIQHFSQDEVKVKWPNDIYIDNGKVCGFLTEMVANNDGIEAIICGIGINLTQQLENF 220 (323)
T ss_dssp ECCCCCTTSGGGHHHHHHHHHHHHHHTTCSSCEEEETTTEEEETTEEEEEEEEEEEECSSSEEEEEEEEEEECSCCGGGS
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeCCCeEEECCEEEEEEEeEeeeCCCCCCEEEEEEEEEecCCcccC
Confidence 9998888889999999999999999998 6799999999999999999999999988877778999999999998643 3
Q ss_pred CCCcc--ccccccccC--CCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHhcccCCCEEEEEECCeEEEEEEEeECC
Q psy15214 164 SKKIN--IGNISELLN--MEHEKLLAVFICYLIDSLKLFEHYGFSIFMKYWNFNHAYTNKTVDILKLNKIQKGIVIGINK 239 (265)
Q Consensus 164 ~~~~~--atsL~~~~g--~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gk~V~v~~~~~~~~G~~~gI~~ 239 (265)
+++++ ||||..+.+ ++|++|++.++++|+.+|..|.+.+|..++++|++++.++|++|++..+++.++|++.|||+
T Consensus 221 p~~l~~~atsL~~~~g~~~~r~~ll~~ll~~l~~~~~~~~~~g~~~~~~~~~~~~~~~g~~V~v~~~~~~~~G~~~gId~ 300 (323)
T 3rkx_A 221 DESIRHRATSIQLHDKNKLDRYQFLERLLQEIEKRYNQFLTLPFSEIREEYNAASNIWNRTLLFTENDKQFKGQAIDLDY 300 (323)
T ss_dssp CTTTGGGBCCSGGGCSSCCCHHHHHHHHHHHHHHHHHHHHHSCGGGTHHHHHHTBSCSSSCEEEECC-CEEEEEEEEECT
T ss_pred CcccCcceeeHhhhhCCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCEEEEEECCeEEEEEEEEECC
Confidence 34554 999998876 99999999999999999999999999999999999999999999999988889999999999
Q ss_pred CceEEEEeCCc-eEEEEeeeEEE
Q psy15214 240 NGCLLLNTKFG-KITISSGDVSL 261 (265)
Q Consensus 240 ~G~L~l~~~~g-~~~~~~Gev~l 261 (265)
+|+|+|++++| +++|++||||+
T Consensus 301 ~G~Llv~~~~G~~~~~~sGevsl 323 (323)
T 3rkx_A 301 DGYLIVRDEAGESHRLISADIDF 323 (323)
T ss_dssp TSCEEEEETTSCEEEESSCEEEC
T ss_pred CCEEEEEECCCCEEEEEEeeEEC
Confidence 99999999999 79999999985
No 2
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=100.00 E-value=5.7e-64 Score=458.17 Aligned_cols=250 Identities=31% Similarity=0.486 Sum_probs=210.4
Q ss_pred CCCCHHHHHhhhccCCCCCceeEEEEcccccHHHHHHHHhhcCCCCCCeEEEeCcccCCCCCCCCeeeeCCCCceEEEEe
Q psy15214 6 HSLNTSRIKNLYYNYNTDTKIDIRTILSTNSTNSNLLSIANTGLLFHPTFLATKIQTAGRGRAGRIWYSEPEITLTFSLA 85 (265)
Q Consensus 6 ~~l~~~~i~~~~~~~~~~~~~~i~~~~~v~STn~~a~~~~~~~~~~~~~vv~A~~QT~GrGR~gr~W~Sp~g~~L~~S~~ 85 (265)
+.|+++.|...+ ..++++++++++|||++++ +++...+++++|+|++||+||||+||+|+||+|+|||||++
T Consensus 65 ~~L~~~eI~~~L------~~~~~~~~~~~~STn~~~~--~~~~~~~~g~vv~A~~QtaGRGR~gr~W~Sp~g~~l~~S~~ 136 (321)
T 1bia_A 65 QLLNAKQILGQL------DGGSVAVLPVIDSTNQYLL--DRIGELKSGDACIAEYQQAGRGRRGRKWFSPFGANLYLSMF 136 (321)
T ss_dssp CCCCHHHHHHTC------CSSCEEECSSBSCHHHHHH--TTGGGCCTTCEEEESCBTTC---------CCTTSEEEEEEE
T ss_pred ccCCHHHHHHhc------CCceEEEEEeeCChhHHHH--HHHhcCCCCcEEEECccCCCCCCCCCcccCCCCCCEEEEEE
Confidence 468999998766 2256999999999999999 88766668999999999999999999999999999999999
Q ss_pred eecCcCccccCchHHHHHHHHHHHHHHcCC-ccceeeCCcEEEcCeeEEEEEEEeeecCCCccEEEEEeccccCCCCCCC
Q psy15214 86 WKFKISLKYLTSLPLVISIALSIALKKFGQ-KVQLKWPNDLLLNGNKFCGILIDTCIEKKNNNWAIIGIGLNLGLPRILS 164 (265)
Q Consensus 86 ~~~~~~~~~~~~l~l~~alav~~aL~~~~~-~~~iKWPNDI~~~~~Ki~GIL~E~~~~~~~~~~~viGIGiNv~~~~~~~ 164 (265)
++|+.++..++.+++++|+||++||++++. +++||||||||++|+|+||||+|...+.+...++||||||||+++++++
T Consensus 137 l~~~~~~~~~~~l~l~~~~av~~al~~~~~~~~~iKWPNDi~~~g~Kl~GIL~E~~~~~~~~~~~viGiGiNv~~~~~~~ 216 (321)
T 1bia_A 137 WRLEQGPAAAIGLSLVIGIVMAEVLRKLGADKVRVKWPNDLYLQDRKLAGILVELTGKTGDAAQIVIGAGINMAMRRVEE 216 (321)
T ss_dssp EEECC-CCCTHHHHHHHHHHHHHHHHHTTCTTCEEETTTEEEETTEEEEEEEEEEEC----CEEEEEEEEEECCC-----
T ss_pred EccCCChHHHhhHHHHHHHHHHHHHHHhCCCCccEeCcceeeECCeeEEEEEEEeeecCCCCcEEEEEEEEecCCCcccc
Confidence 999887778889999999999999999987 7999999999999999999999998776667799999999999976544
Q ss_pred CCcc--ccccccccC--CCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHhcccCCCEEEEEECCeEEEEEEEeECCC
Q psy15214 165 KKIN--IGNISELLN--MEHEKLLAVFICYLIDSLKLFEHYGFSIFMKYWNFNHAYTNKTVDILKLNKIQKGIVIGINKN 240 (265)
Q Consensus 165 ~~~~--atsL~~~~g--~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gk~V~v~~~~~~~~G~~~gI~~~ 240 (265)
++++ ||||.+ .+ +++++|++.++++|+.+|..|.+++|+.++++|++++.+.|++|++..+++.++|++.|||++
T Consensus 217 ~~~~~~atsL~~-~~~~~~r~~ll~~ll~~l~~~~~~~~~~g~~~~~~~~~~~~~~~g~~V~v~~~~~~~~G~~~gid~~ 295 (321)
T 1bia_A 217 SVVNQGWITLQE-AGINLDRNTLAAMLIRELRAALELFEQEGLAPYLSRWEKLDNFINRPVKLIIGDKEIFGISRGIDKQ 295 (321)
T ss_dssp ------CCCTTT-TTCCCCHHHHHHHHHHHHHHHHHHHHHHTTGGGHHHHHHHBTTTTSEEEEEETTEEEEEEEEEECTT
T ss_pred chhccccccHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhcCCEEEEEECCcEEEEEEEEECCC
Confidence 4453 899988 45 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeCCceEEEEeeeEEEeec
Q psy15214 241 GCLLLNTKFGKITISSGDVSLRLK 264 (265)
Q Consensus 241 G~L~l~~~~g~~~~~~Gev~l~~~ 264 (265)
|+|+|++++|.++|++|||++|..
T Consensus 296 G~L~v~~~~g~~~~~~Gev~~r~~ 319 (321)
T 1bia_A 296 GALLLEQDGIIKPWMGGEISLRSA 319 (321)
T ss_dssp SCEEEEETTEEEEESSCEEEEC--
T ss_pred CeEEEEECCCEEEEEeeeEEEecC
Confidence 999999999988999999999864
No 3
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=100.00 E-value=8.6e-64 Score=438.00 Aligned_cols=225 Identities=30% Similarity=0.454 Sum_probs=194.1
Q ss_pred eeEEEEcccccHHHHHHHHhhcCCCCCCeEEEeCcccCCCCCCCCeeeeCCCCceEEEEeeecCcCccccCchHHHHHHH
Q psy15214 26 IDIRTILSTNSTNSNLLSIANTGLLFHPTFLATKIQTAGRGRAGRIWYSEPEITLTFSLAWKFKISLKYLTSLPLVISIA 105 (265)
Q Consensus 26 ~~i~~~~~v~STn~~a~~~~~~~~~~~~~vv~A~~QT~GrGR~gr~W~Sp~g~~L~~S~~~~~~~~~~~~~~l~l~~ala 105 (265)
++++++++++|||++|+ + ...+++++|+|++||+||||+||+|+||+| |||||++++|+ ++..++.+++++|+|
T Consensus 3 ~~i~~~~~~~STn~~~~--~--~~~~~g~vv~A~~QTaGRGR~Gr~W~Sp~G-~l~~S~~l~p~-~~~~~~~lsl~~~lA 76 (233)
T 2eay_A 3 KNLIWLKEVDSTQERLK--E--WNVSYGTALVADRQTKGRGRLGRKWLSQEG-GLYFSFLLNPK-EFENLLQLPLVLGLS 76 (233)
T ss_dssp CEEEEEEEBSCHHHHHH--H--SCCCTTEEEEESCBCC------------CC-EEEEEEEECTT-TCCCTTHHHHHHHHH
T ss_pred ccEEEEcccCCHHHHHH--h--cCCCCCeEEEECCcCCCCCCCCCeeeCCCC-CcEEEEEEcCC-CHHHHHHHHHHHHHH
Confidence 45899999999999999 7 346899999999999999999999999999 99999999988 778889999999999
Q ss_pred HHHHHHHc-CCccceeeCCcEEEcCeeEEEEEEEeeecCCCccEEEEEeccccCCCCCCCCCcc--ccccccccC--CCH
Q psy15214 106 LSIALKKF-GQKVQLKWPNDLLLNGNKFCGILIDTCIEKKNNNWAIIGIGLNLGLPRILSKKIN--IGNISELLN--MEH 180 (265)
Q Consensus 106 v~~aL~~~-~~~~~iKWPNDI~~~~~Ki~GIL~E~~~~~~~~~~~viGIGiNv~~~~~~~~~~~--atsL~~~~g--~~~ 180 (265)
|++||+++ +.+++||||||||++|||+||||+|...+. . ||||||||++ .+.+++++ +|||..+.+ +++
T Consensus 77 v~~al~~~~~~~~~iKWPNDI~~~gkKl~GIL~E~~~~~----~-ViGIGiNv~~-~~~p~~~~~~atsL~~~~~~~~~r 150 (233)
T 2eay_A 77 VSEALEEITEIPFSLKWPNDVYFQEKKVSGVLCELSKDK----L-IVGIGINVNQ-REIPEEIKDRATTLYEITGKDWDR 150 (233)
T ss_dssp HHHHHHHHHCCCCEEETTTEEEETTEEEEEEEEEEETTE----E-EEEEEEECSC-CCCCTTTTTTBCCHHHHHSSCCCH
T ss_pred HHHHHHHhcCCCccEeCcceEEECCeEEEEEEEEeecCC----C-EEEEEEEccc-ccCcchhhhhhhhhHHhHCCCCCH
Confidence 99999996 889999999999999999999999987652 2 9999999997 34444453 999987765 999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHhcccCCCEEEEEECCeEEEEEEEeECCCceEEEEeCCceEEEEeeeEE
Q psy15214 181 EKLLAVFICYLIDSLKLFEHYGFSIFMKYWNFNHAYTNKTVDILKLNKIQKGIVIGINKNGCLLLNTKFGKITISSGDVS 260 (265)
Q Consensus 181 ~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gk~V~v~~~~~~~~G~~~gI~~~G~L~l~~~~g~~~~~~Gev~ 260 (265)
++|++.++++|+.+|..|.+++|+.++++|++++.++|++|++..+++ ++|++.|||++|+|+|++++|.+++++|||+
T Consensus 151 ~~ll~~ll~~l~~~~~~~~~~g~~~~~~~~~~~~~~~g~~V~v~~~~~-~~G~~~gId~~G~L~v~~~~G~~~~~~Gev~ 229 (233)
T 2eay_A 151 KEVLLKVLKRISENLKKFKEKSFKEFKGKIESKMLYLGEEVKLLGEGK-ITGKLVGLSEKGGALILTEEGIKEILSGEFS 229 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCGGGTHHHHHHHBTTTTSEEEETTEEE-EEEEEEEECTTSCEEEEETTEEEEECSCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHhhcccCCEEEEEECCe-EEEEEEEECCCCeEEEEECCCeEEEEEeEEE
Confidence 999999999999999999999999999999999999999999987777 9999999999999999999998899999999
Q ss_pred Eee
Q psy15214 261 LRL 263 (265)
Q Consensus 261 l~~ 263 (265)
+|.
T Consensus 230 ~r~ 232 (233)
T 2eay_A 230 LRR 232 (233)
T ss_dssp EC-
T ss_pred Eec
Confidence 985
No 4
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A
Probab=100.00 E-value=2.7e-63 Score=443.39 Aligned_cols=247 Identities=21% Similarity=0.302 Sum_probs=218.0
Q ss_pred CCCCHHHHHhhhccCCCCCceeEEEEcccccHHHHHHHHhhcCC-C-CCCeEEEeCcccCCCCCCCCeeeeCCCCceEEE
Q psy15214 6 HSLNTSRIKNLYYNYNTDTKIDIRTILSTNSTNSNLLSIANTGL-L-FHPTFLATKIQTAGRGRAGRIWYSEPEITLTFS 83 (265)
Q Consensus 6 ~~l~~~~i~~~~~~~~~~~~~~i~~~~~v~STn~~a~~~~~~~~-~-~~~~vv~A~~QT~GrGR~gr~W~Sp~g~~L~~S 83 (265)
..||++.|+.+|..... ...+++++++++|||++|+ +++.. . +++++|+|++||+||||+||+|+||+|+|||||
T Consensus 13 ~~L~~~~i~~~l~~~~~-~~~~i~~~~~~~STN~~~~--~~~~~g~~~~g~vv~A~~QTaGRGR~GR~W~Sp~G~~L~~S 89 (270)
T 3rux_A 13 PPLDERSLRDQLIGAGS-GWRQLDVVAQTGSTNADLL--ARAASGADIDGVVLIAEHQTAGRGRHGRGWAATARAQIILS 89 (270)
T ss_dssp CCCCHHHHHHHHSSTTC-CCCEEEEEEEESCHHHHHH--HHHHTTCCCBTEEEEEEEESSEECGGGCEECCCTTSEEEEE
T ss_pred CCCCHHHHHHhhccccc-cCceEEEEccCCcHHHHHH--HHHhcCCCCCCEEEEECccCCCCCCCCCeeeCCCCCCeEEE
Confidence 57999999988821110 2236999999999999999 87765 4 789999999999999999999999999999999
Q ss_pred EeeecC-cCccccCchHHHHHHHHHHHHH---Hc-CCccceeeCCcEEEcCeeEEEEEEEeeecCCCccEEEEEeccccC
Q psy15214 84 LAWKFK-ISLKYLTSLPLVISIALSIALK---KF-GQKVQLKWPNDLLLNGNKFCGILIDTCIEKKNNNWAIIGIGLNLG 158 (265)
Q Consensus 84 ~~~~~~-~~~~~~~~l~l~~alav~~aL~---~~-~~~~~iKWPNDI~~~~~Ki~GIL~E~~~~~~~~~~~viGIGiNv~ 158 (265)
++++|+ .++..++.+++++|+||++||+ ++ +.+++||||||||++|||+||||+|... .++||||||||+
T Consensus 90 ~~l~~~~~~~~~~~~lsl~~~lAv~~aL~~~~~~~~~~~~iKWPNDI~~~gkKl~GIL~E~~~-----~~vViGIGiNv~ 164 (270)
T 3rux_A 90 VGVRVVDVPVQAWGWLSLAAGLAVLDSVAPLIAVPPAETGLKWPNDVLARGGKLAGILAEVAQ-----PFVVLGVGLNVT 164 (270)
T ss_dssp EEEECTTSCGGGTHHHHHHHHHHHHHHHGGGSSSCCSSCEEETTTEEEETTEEEEEEEEEEET-----TEEEEEEEEESS
T ss_pred EEEccCCCChHHHHHHHHHHHHHHHHHHHHhcccCCCceEEECCCeEEECCEEEEEEEEEeeC-----CeEEEEEEEecc
Confidence 999987 4667788999999999999999 65 6799999999999999999999999874 389999999999
Q ss_pred CCCCCCCCccccccccccC-CCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHhcccCCCEEEEEEC-CeEEEEEEEe
Q psy15214 159 LPRILSKKINIGNISELLN-MEHEKLLAVFICYLIDSLKLFEHYGFSIFMKYWNFNHAYTNKTVDILKL-NKIQKGIVIG 236 (265)
Q Consensus 159 ~~~~~~~~~~atsL~~~~g-~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gk~V~v~~~-~~~~~G~~~g 236 (265)
+++..++.-.+|||..+.+ .++++|++.++++|+.+|..|.+. |..++++|+++++++|++|++..+ ++.++|++.|
T Consensus 165 ~~~~~~~~~~atSL~~~~~~~~r~~ll~~ll~~l~~~~~~~~~~-~~~~~~~~~~~~~~~g~~V~v~~~~~~~~~G~~~g 243 (270)
T 3rux_A 165 QAPEEVDPDATSLLDLGVAAPDRNRIASRLLRELEARIIQWRNA-NPQLAADYRARSLTIGSRVRVELPGGQDVVGIARD 243 (270)
T ss_dssp CCHHHHCTTBCCTGGGTCSSCCHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHTBSSTTSEEEEECTTSCEEEEEEEE
T ss_pred CCccccCchhhccHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHhcccCCEEEEEECCCeEEEEEEEE
Confidence 8753323223999998766 899999999999999999999877 899999999999999999999964 6778999999
Q ss_pred ECCCceEEEEeCCceEEEEeeeEEE
Q psy15214 237 INKNGCLLLNTKFGKITISSGDVSL 261 (265)
Q Consensus 237 I~~~G~L~l~~~~g~~~~~~Gev~l 261 (265)
||++|+|+|++++|.++|++|||+-
T Consensus 244 Id~~G~L~v~~~~g~~~i~sGeV~~ 268 (270)
T 3rux_A 244 IDDQGRLCLDVGGRTVVVSAGDVVH 268 (270)
T ss_dssp ECTTSCEEEEETTEEEEESSCEEEE
T ss_pred ECCCCeEEEEECCCEEEEEEEEEEE
Confidence 9999999999998899999999964
No 5
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=100.00 E-value=3.7e-63 Score=434.39 Aligned_cols=222 Identities=25% Similarity=0.307 Sum_probs=202.7
Q ss_pred ceeEEEEcccccHHHHHHHHhhcCCCCCCeEEEeCcccCCCCCCCCeeeeCCCCceEEEEeeecCcCccccCchHHHHHH
Q psy15214 25 KIDIRTILSTNSTNSNLLSIANTGLLFHPTFLATKIQTAGRGRAGRIWYSEPEITLTFSLAWKFKISLKYLTSLPLVISI 104 (265)
Q Consensus 25 ~~~i~~~~~v~STn~~a~~~~~~~~~~~~~vv~A~~QT~GrGR~gr~W~Sp~g~~L~~S~~~~~~~~~~~~~~l~l~~al 104 (265)
++.++++++++|||++|+ ++ ..+++++|+|++||+||||+||+|+||+| |||||++++|+.++..++.+++++|+
T Consensus 10 g~~i~~~~~~~STn~~~~--~~--~~~~~~vv~A~~QtaGRGR~Gr~W~Sp~G-~l~~S~~l~p~~~~~~~~~l~l~~al 84 (235)
T 2dxu_A 10 GRRVIYFQEITSTNEFAK--TS--YLEEGTVIVADKQTMGHGALNRKWESPEG-GLWLSIVLSPKVPQKDLPKIVFLGAV 84 (235)
T ss_dssp TSEEEEESSBSCHHHHHH--HS--CCCTTCEEEESCBSSCBCGGGCBCCCCTT-SEEEEEEECCCSCGGGGGGHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHH--hc--CCCCCeEEEECccccCcCCCcCcccCCCC-CeEEEEEeecCCCHHHHHHHHHHHHH
Confidence 557999999999999999 76 46889999999999999999999999999 99999999988888888999999999
Q ss_pred HHHHHHHHcCCccceeeCCcEEEcCeeEEEEEEEeeecCCCccEEEEEeccccCCCCCCCCCccccccccccC--CCHHH
Q psy15214 105 ALSIALKKFGQKVQLKWPNDLLLNGNKFCGILIDTCIEKKNNNWAIIGIGLNLGLPRILSKKINIGNISELLN--MEHEK 182 (265)
Q Consensus 105 av~~aL~~~~~~~~iKWPNDI~~~~~Ki~GIL~E~~~~~~~~~~~viGIGiNv~~~~~~~~~~~atsL~~~~g--~~~~~ 182 (265)
||++||++++.+++||||||||++|||+||||+|. ...++||||||||+++ +|++ +|||..+.+ +++++
T Consensus 85 Av~~al~~~~~~~~iKWPNDi~~~gkKl~GIL~E~-----~~~~vViGiGiNv~~~--~p~~--atsL~~~~~~~~~r~~ 155 (235)
T 2dxu_A 85 GVVETLKEFSIDGRIKWPNDVLVNYKKIAGVLVEG-----KGDKIVLGIGLNVNNK--VPNG--ATSMKLELGSEVPLLS 155 (235)
T ss_dssp HHHHHHHHTTCCCEEETTTEEEETTEEEEEEEEEE-----CSSCEEEEEEECSSSC--CCTT--BCCHHHHHTSCCCHHH
T ss_pred HHHHHHHHhCCCeeeeCCCEEEECCEEEEEEEEee-----cCCEEEEEEEEEeCCC--CCCc--hhhHHHhhCCCCCHHH
Confidence 99999999988999999999999999999999999 2358999999999986 2222 899987766 99999
Q ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHhcccCCCEEEEEECCeEEEEEEEeECCCceEEEEeCCc-eEEEEeeeEEE
Q psy15214 183 LLAVFICYLIDSLKLFEHYGFSIFMKYWNFNHAYTNKTVDILKLNKIQKGIVIGINKNGCLLLNTKFG-KITISSGDVSL 261 (265)
Q Consensus 183 l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gk~V~v~~~~~~~~G~~~gI~~~G~L~l~~~~g-~~~~~~Gev~l 261 (265)
|++.++++|+.+|..|. ++|+.++++|++++. +|++|++..+++ ++|++.|||++|+|+|++++| .+++++|||++
T Consensus 156 ll~~ll~~l~~~~~~~~-~g~~~~~~~~~~~~~-~g~~V~v~~~~~-~~G~~~gId~~G~L~v~~~~G~~~~~~~Gev~~ 232 (235)
T 2dxu_A 156 VFRSLITNLDRLYLNFL-KNPMDILNLVRDNMI-LGVRVKILGDGS-FEGIAEDIDDFGRLIIRLDSGEVKKVIYGDVSL 232 (235)
T ss_dssp HHHHHHHHHHHHHHHHH-HCTTHHHHHHHHHBC-CSSEEEC----C-CEEEEEEECTTSCEEEECTTSCEEEECCSSCCC
T ss_pred HHHHHHHHHHHHHHHHh-cCHHHHHHHHHHhcc-cCCeEEEEECCe-EEEEEEEECCCCEEEEEECCCCEEEEEeeEEEE
Confidence 99999999999999998 889999999999999 999999998877 999999999999999999999 89999999998
Q ss_pred ee
Q psy15214 262 RL 263 (265)
Q Consensus 262 ~~ 263 (265)
|.
T Consensus 233 ~~ 234 (235)
T 2dxu_A 233 RF 234 (235)
T ss_dssp EE
T ss_pred ec
Confidence 85
No 6
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=2.3e-62 Score=429.98 Aligned_cols=221 Identities=25% Similarity=0.377 Sum_probs=202.5
Q ss_pred eEEEEcccccHHHHHHHHhhcCC-CCCCeEEEeCcccCCCCCCCCeeeeCCCCceEEEEeeec-CcCccccCchHHHHHH
Q psy15214 27 DIRTILSTNSTNSNLLSIANTGL-LFHPTFLATKIQTAGRGRAGRIWYSEPEITLTFSLAWKF-KISLKYLTSLPLVISI 104 (265)
Q Consensus 27 ~i~~~~~v~STn~~a~~~~~~~~-~~~~~vv~A~~QT~GrGR~gr~W~Sp~g~~L~~S~~~~~-~~~~~~~~~l~l~~al 104 (265)
+++++++++|||++|+ +++.+ .+ +++|+|++||+||||+||+|+||+| |||||++++| +.++ +.+++++|+
T Consensus 2 ~i~~~~~~~STn~~~~--~~~~~~~~-g~vv~A~~QTaGRGR~Gr~W~Sp~G-~l~~S~~l~p~~~~~---~~l~l~~~l 74 (237)
T 2ej9_A 2 EIIHLSEIDSTNDYAK--ELAKEGKR-NFIVLADKQNNGKGRWGRVWYSDEG-GLYFSMVLDSKLYNP---KVINLLVPI 74 (237)
T ss_dssp EEEEESCBSCHHHHHH--HHHHTTCC-SEEEEESCBSSCBCGGGCBCCCCTT-SEEEEEEEETTSSCH---HHHHHHHHH
T ss_pred cEEEEeeCCCHHHHHH--HHHhCCCC-CEEEEECccCCCCCCCCCeeeCCCC-CeEEEeEEccccCCH---HHHHHHHHH
Confidence 5899999999999999 87765 55 9999999999999999999999999 9999999998 5544 789999999
Q ss_pred HHHHHHHHc-CCccceeeCCcEEEcC----eeEEEEEEEeeecCCCccEEEEEeccccCCCCCCCCCcc--ccccccccC
Q psy15214 105 ALSIALKKF-GQKVQLKWPNDLLLNG----NKFCGILIDTCIEKKNNNWAIIGIGLNLGLPRILSKKIN--IGNISELLN 177 (265)
Q Consensus 105 av~~aL~~~-~~~~~iKWPNDI~~~~----~Ki~GIL~E~~~~~~~~~~~viGIGiNv~~~~~~~~~~~--atsL~~~~g 177 (265)
||++||+++ +.+++||||||||++| ||+||||+|. ...++||||||||+++ .+++++ +|||..+.+
T Consensus 75 Av~~al~~~~~~~~~iKWPNDi~~~g~~~~kKl~GIL~E~-----~~~~vViGiGiNv~~~--~p~~l~~~atsL~~~~~ 147 (237)
T 2ej9_A 75 CIIEVLKNYVDKELGLKFPNDIMVKVNDNYKKLGGILTEL-----TDDYMIIGIGINVNNQ--IRNEIREIAISLKEITG 147 (237)
T ss_dssp HHHHHHTTTCCSCEEEETTTEEEEEETTEEEEEEEEEEEE-----CSSEEEEEEEECSSSC--CCGGGGGTBCCHHHHHS
T ss_pred HHHHHHHHhhCCCcceeCCCEEEECCCcCccEeeEEEEec-----CCCeEEEEEEEecCCC--CcchhhhhhccHhHhHC
Confidence 999999997 7799999999999999 9999999999 2469999999999985 333443 999998766
Q ss_pred --CCHHHHHHHHHHHHHHHHHHHHhc--ChHHHHHHHHHhcccCCCEEEEEECCeE-EEEEEEeECCCceEEEEeCCceE
Q psy15214 178 --MEHEKLLAVFICYLIDSLKLFEHY--GFSIFMKYWNFNHAYTNKTVDILKLNKI-QKGIVIGINKNGCLLLNTKFGKI 252 (265)
Q Consensus 178 --~~~~~l~~~l~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~gk~V~v~~~~~~-~~G~~~gI~~~G~L~l~~~~g~~ 252 (265)
+++++|++.++++|+.+|..|.++ +|+.++++|+++++++|++|++..+++. ++|++.|||++|+|+ ++++|.+
T Consensus 148 ~~~~r~~ll~~ll~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~V~v~~~~~~~~~G~~~gId~~G~L~-~~~~G~~ 226 (237)
T 2ej9_A 148 KELDKVEILSNFLKTFESYLEKLKNKEIDDYEILKKYKKYSITIGKQVKILLSNNEIITGKVYDIDFDGIVL-GTEKGIE 226 (237)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHBSSTTCEEEEEETTSCEEEEEEEEECSSEEEE-EETTEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhCccCCEEEEEECCCeEEEEEEEEECCCCeEE-EcCCCCE
Confidence 999999999999999999999887 9999999999999999999999998777 899999999999999 9999988
Q ss_pred EEEeeeEEEe
Q psy15214 253 TISSGDVSLR 262 (265)
Q Consensus 253 ~~~~Gev~l~ 262 (265)
+|++|||+++
T Consensus 227 ~~~~Gev~~~ 236 (237)
T 2ej9_A 227 RIPSGICIHV 236 (237)
T ss_dssp EEEGGGEEEE
T ss_pred EEEEEEEEEe
Confidence 9999999986
No 7
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP}
Probab=100.00 E-value=2.4e-51 Score=359.52 Aligned_cols=213 Identities=13% Similarity=0.117 Sum_probs=192.1
Q ss_pred CceeEEEEcccccHHHHHHHHhhcCC-CCCCeEEEeCcccCCCCCCCCeeeeCCCCceEEEEeeecCcCccccCchHHHH
Q psy15214 24 TKIDIRTILSTNSTNSNLLSIANTGL-LFHPTFLATKIQTAGRGRAGRIWYSEPEITLTFSLAWKFKISLKYLTSLPLVI 102 (265)
Q Consensus 24 ~~~~i~~~~~v~STn~~a~~~~~~~~-~~~~~vv~A~~QT~GrGR~gr~W~Sp~g~~L~~S~~~~~~~~~~~~~~l~l~~ 102 (265)
..|+++++++++|||++|+ +++.+ .++|++|+|+ +|+|||||++++|+.++...+.+++++
T Consensus 10 p~~~~~~l~~~~STN~~a~--~~a~~g~~~g~vv~A~----------------~g~~L~~S~~l~~~~~~~~~~~lsl~~ 71 (235)
T 3bfm_A 10 PLMTGEAAGPGQDPFDLAC--QKAELGVDAGLVVYEL----------------GTDVLRAALVLAPEVPLAKAMAMLPVC 71 (235)
T ss_dssp TTCEEEECCTTCCHHHHHH--HHHHTTCCTTEEEEEE----------------CSSEEEEEEEECCSSCHHHHTTHHHHH
T ss_pred CCcceeecCCCCCHHHHHH--HHHhcCCCCCEEEEEc----------------CCCCEEEEEEecCCCCHHHHHHHHHHH
Confidence 5678999999999999999 87766 6789999999 455999999999988777889999999
Q ss_pred HHHHHHHHHHcCC-c--cceeeCCcEEEcCeeEEEEEEEeeec--CCCccEEEEEeccccCCCCCCCCCc-c-ccccccc
Q psy15214 103 SIALSIALKKFGQ-K--VQLKWPNDLLLNGNKFCGILIDTCIE--KKNNNWAIIGIGLNLGLPRILSKKI-N-IGNISEL 175 (265)
Q Consensus 103 alav~~aL~~~~~-~--~~iKWPNDI~~~~~Ki~GIL~E~~~~--~~~~~~~viGIGiNv~~~~~~~~~~-~-atsL~~~ 175 (265)
|+||+++|++++. + ++||||||||++|||+||||+|...+ .+...++||||||||+++++. .+ + +|||..+
T Consensus 72 alAv~~aL~~~~~~~~~~~iKWPNDI~~~gkKl~GIL~E~~~~~~~~~~~~vViGIGiNv~~~~~~--~~~~~atsL~~~ 149 (235)
T 3bfm_A 72 GVGFQNALGALAPPEVAVHLDWNGALRINGARCGRLRIAASTDDPDTQPDWLVVGLDLPLWPEGDG--GETPDETALYAE 149 (235)
T ss_dssp HHHHHHHHHHHSCTTCCEEECTTSEEEETTEEEEEEEEEESCCCTTSCCSCEEEEEEEESSCCCSS--CCCCCSCCGGGT
T ss_pred HHHHHHHHHHhcCCCcceEecCCCeEEECCeEEEEEEEEeeccCCCCCccEEEEEEEEEcCCCCcc--cccccccchhHh
Confidence 9999999999865 5 99999999999999999999999774 455679999999999987542 22 2 9999988
Q ss_pred cC--CCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHhcccCCCEEEEEECCeEEEEEEEeECCCceEEEEeCCceEE
Q psy15214 176 LN--MEHEKLLAVFICYLIDSLKLFEHYGFSIFMKYWNFNHAYTNKTVDILKLNKIQKGIVIGINKNGCLLLNTKFGKIT 253 (265)
Q Consensus 176 ~g--~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gk~V~v~~~~~~~~G~~~gI~~~G~L~l~~~~g~~~ 253 (265)
.+ +++++|++.++++|+.+|..|.+.+|+.++++|++++.++||+|++ .+ ++|++.|||++|+|+|++++|.++
T Consensus 150 ~~~~~~r~~ll~~ll~~l~~~~~~~~~~g~~~~~~~~~~~~~~~g~~V~v--~~--~~G~~~gId~~G~L~v~~~~G~~~ 225 (235)
T 3bfm_A 150 GCADVAAPRLLESWARHCLHWINRWDEGELETIHGEWRGLAHGMGEARTE--AG--RSGTFLGVDEDFGMLLRDETTTHL 225 (235)
T ss_dssp TCTTCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHBTTTTSEEEE--TT--EEEEEEEECTTCCEEEECSSCEEE
T ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCEEEE--Ee--EEEEEEEECCCCeEEEEeCCCeEE
Confidence 76 9999999999999999999999999999999999999999999999 33 899999999999999999999889
Q ss_pred EEeeeEE
Q psy15214 254 ISSGDVS 260 (265)
Q Consensus 254 ~~~Gev~ 260 (265)
|++|||+
T Consensus 226 i~~GeV~ 232 (235)
T 3bfm_A 226 IPLTTVL 232 (235)
T ss_dssp ECGGGGS
T ss_pred EEeeeeE
Confidence 9999985
No 8
>2qhs_A Lipoyltransferase; globular protein; HET: OCA; 1.50A {Thermus thermophilus} PDB: 2qht_A 2qhu_A 2qhv_A
Probab=98.75 E-value=1e-07 Score=82.87 Aligned_cols=120 Identities=15% Similarity=0.194 Sum_probs=83.7
Q ss_pred CCCCCeeeeCCCCce-EEEEeeecCcCccccCchHHHHHHHHHHHHHHcCCccce-eeCCcEEEcCeeEEEEEEEeeecC
Q psy15214 66 GRAGRIWYSEPEITL-TFSLAWKFKISLKYLTSLPLVISIALSIALKKFGQKVQL-KWPNDLLLNGNKFCGILIDTCIEK 143 (265)
Q Consensus 66 GR~gr~W~Sp~g~~L-~~S~~~~~~~~~~~~~~l~l~~alav~~aL~~~~~~~~i-KWPNDI~~~~~Ki~GIL~E~~~~~ 143 (265)
-|.|..=+.-+| +| +++++ .+.. .....--...-+++++|+++|++... .++|||+++|+||||+-.....
T Consensus 94 ~rGGgavyH~pG-qlv~Y~i~-~~~~---~~~~~~~~l~~~ii~~L~~lGi~a~~~~g~~dv~v~grKIag~g~~~~~-- 166 (237)
T 2qhs_A 94 ERGGDVTYHGPG-QLVGYPIF-PVGR---EVRRFLRQIEEAIVRVAAGYGISAYPTPGYAGVWVGEDKLCAIGVAVKE-- 166 (237)
T ss_dssp CSSSSEEEECTT-EEEEEEEC-CCTT---CHHHHHHHHHHHHHHHHHHTTCCCBCCSSSSSEEETTEEEEEEEEEEET--
T ss_pred cCCCEEEEECCC-CEEEEEEE-ECCc---CHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCEEECCcEEEEEeEEeeC--
Confidence 455665555667 55 44443 3322 11111122345788999999998887 6899999999999999987432
Q ss_pred CCccEEEEEeccccCCCCCCCC-----Ccc---ccccccccC--CCHHHHHHHHHHHHHHHH
Q psy15214 144 KNNNWAIIGIGLNLGLPRILSK-----KIN---IGNISELLN--MEHEKLLAVFICYLIDSL 195 (265)
Q Consensus 144 ~~~~~~viGIGiNv~~~~~~~~-----~~~---atsL~~~~g--~~~~~l~~~l~~~l~~~~ 195 (265)
..++-|+.||++.....+. .+. .|||.++.+ ++.+++...++++|.+.+
T Consensus 167 ---~~~~hg~aLnv~~dl~~f~~i~p~g~~~~~vtSl~~~l~~~~~~~ev~~~l~~~f~~~~ 225 (237)
T 2qhs_A 167 ---GVSFHGFALNVNTDLNDFTVIVPCGLKGKGVTSLEKLLGRKVPMEEAKARVVAAFAEVF 225 (237)
T ss_dssp ---TEEEEEEEEESSCCGGGGGGBCCCSSCCSEECCHHHHHTSCCCHHHHHHHHHHHHHHHH
T ss_pred ---CeEEEeEEEecccChHHhcCcCcCccCCCcEEeHHHhhCCCCCHHHHHHHHHHHHHHHh
Confidence 3678899999998654331 122 889987666 899999999998887665
No 9
>1w66_A Lipoyltransferase; lipoate-protein ligase B, lipoic acid, acyltransferase, mycobacterium tuberculosis structural proteomics project; HET: DKA; 1.08A {Mycobacterium tuberculosis} SCOP: d.104.1.3
Probab=98.06 E-value=5.2e-05 Score=65.45 Aligned_cols=124 Identities=15% Similarity=0.105 Sum_probs=86.3
Q ss_pred CCCCCCeeeeCCCCceEEEEeeecCcCccccCchHHHHHHHHHHHHHHcCCccceee-CCcEEEc---CeeEEEEEEEee
Q psy15214 65 RGRAGRIWYSEPEITLTFSLAWKFKISLKYLTSLPLVISIALSIALKKFGQKVQLKW-PNDLLLN---GNKFCGILIDTC 140 (265)
Q Consensus 65 rGR~gr~W~Sp~g~~L~~S~~~~~~~~~~~~~~l~l~~alav~~aL~~~~~~~~iKW-PNDI~~~---~~Ki~GIL~E~~ 140 (265)
|.|.|..=+.-|| +|-+..++..... .....+--..-=++.++|+++|++...+= .|||+++ ++|||||=+-..
T Consensus 76 ~~rGG~~tYHgPG-Qlv~Y~Il~l~~~-~~v~~~v~~le~~vI~~L~~~Gi~a~~~~g~~gV~v~~~~~rKIaaig~r~~ 153 (232)
T 1w66_A 76 TDRGGKITWHGPG-QLVGYPIIGLAEP-LDVVNYVRRLEESLIQVCADLGLHAGRVDGRSGVWLPGRPARKVAAIGVRVS 153 (232)
T ss_dssp CSSSSSEEEECTT-EEEEEEECBBCSS-CCHHHHHHHHHHHHHHHHHHTTCCCEEETTEEEEEECSSSCEEEEEEEEEEE
T ss_pred ecCCCceEEECCC-CeEEEEEEECCCC-CCHHHHHHHHHHHHHHHHHHcCCCeEecCCCCeEEecCCCCCEEEEeeeeee
Confidence 4566666666678 7888888875431 11112222335578899999999876652 3899999 999999877543
Q ss_pred ecCCCccEEEEEeccccCCCCCCC----C-Ccc---ccccccccC--CCHHHHHHHHHHHHHHHH
Q psy15214 141 IEKKNNNWAIIGIGLNLGLPRILS----K-KIN---IGNISELLN--MEHEKLLAVFICYLIDSL 195 (265)
Q Consensus 141 ~~~~~~~~~viGIGiNv~~~~~~~----~-~~~---atsL~~~~g--~~~~~l~~~l~~~l~~~~ 195 (265)
. ....=|+-||++..-..+ | .+. .|||.++.+ ++.+++...++++|.+.+
T Consensus 154 ~-----~vt~HG~aLNv~~dL~~f~~I~pcgi~~k~vtSl~~~lg~~~~~~ev~~~l~~~f~~~~ 213 (232)
T 1w66_A 154 R-----ATTLHGFALNCDCDLAAFTAIVPCGISDAAVTSLSAELGRTVTVDEVRATVAAAVCAAL 213 (232)
T ss_dssp T-----TEEEEEEEEESSCCCGGGGGSCGGGCSSSEECCHHHHHTSCCCHHHHHHHHHHHHHHHH
T ss_pred C-----CEEEcceEEecCcChHHhcCccccccCCCceeeeHHHhCCCCCHHHHHHHHHHHHHHHh
Confidence 2 356689999999853322 1 132 799986655 899999999988887765
No 10
>2p0l_A Lipoate-protein ligase A; PFAM, lopoate-protein ligase A, 10425H, structural genomics, structure initiative, PSI-2; 2.04A {Streptococcus agalactiae} SCOP: d.104.1.3
Probab=97.73 E-value=0.00022 Score=63.32 Aligned_cols=144 Identities=18% Similarity=0.155 Sum_probs=92.0
Q ss_pred CCCCCCeeeeCCCCceEEEEeeecC-cCccccCchHHHHHHHHHHHHHHcCCcccee--------eCCcEEEcCeeEEEE
Q psy15214 65 RGRAGRIWYSEPEITLTFSLAWKFK-ISLKYLTSLPLVISIALSIALKKFGQKVQLK--------WPNDLLLNGNKFCGI 135 (265)
Q Consensus 65 rGR~gr~W~Sp~g~~L~~S~~~~~~-~~~~~~~~l~l~~alav~~aL~~~~~~~~iK--------WPNDI~~~~~Ki~GI 135 (265)
|-+.|+.=+..+| +|.+|++.+.+ .........--...-.++++|+++|+++... =.|||+++|+||||+
T Consensus 87 R~sGGgaVyHdpG-~l~ysli~~~~~~~~~~i~~~y~~l~~~ii~aL~~lGi~a~~~~~~~~~c~g~~Dl~v~grKI~G~ 165 (288)
T 2p0l_A 87 RNFGGLAVVADEG-ILNFSLVIPDVFERKLSISDGYLIMVDFIRSIFSDFYQPIEHFEVETSYCPGKFDLSINGKKFAGL 165 (288)
T ss_dssp CTTCCSCEEESTT-EEEEEEEEESCC---CCHHHHHHHHHHHHHHHTTTSCSCCEECCCTTSSSCCTTCEEETTEEEEEE
T ss_pred EcCCCCeEEECCC-cEEEEEEEcCccccCCCHHHHHHHHHHHHHHHHHHcCCcEEEccccCCCCCCCccEEECCEEEEEE
Confidence 4456666666678 89999998754 2111111111234456788899999765542 259999999999998
Q ss_pred EEEeeecCCCccEEEEEeccccCCCCCC-------------C--------CCc-c--ccccccccC--CCHHHHHHHHHH
Q psy15214 136 LIDTCIEKKNNNWAIIGIGLNLGLPRIL-------------S--------KKI-N--IGNISELLN--MEHEKLLAVFIC 189 (265)
Q Consensus 136 L~E~~~~~~~~~~~viGIGiNv~~~~~~-------------~--------~~~-~--atsL~~~~g--~~~~~l~~~l~~ 189 (265)
=.=... ..++.|.-||++.+... . ..+ + .|||++..+ ++.+++.+.+++
T Consensus 166 Aqr~~~-----~~~lhh~sl~v~~dl~~~~~~l~~~~~~~l~~~~~k~~~~gi~~~~VtsL~~~l~~~~~~~~v~~~l~~ 240 (288)
T 2p0l_A 166 AQRRIK-----NGIAVSIYLSVCGDQKGRSQMISDFYKIGLGDTGSPIAYPNVDPEIMANLSDLLDCPMTVEDVIDRMLI 240 (288)
T ss_dssp EEEEET-----TEEEEEEEEECSSCHHHHHHHHHHHHHHHHTTTCCSSCCCCCCTTSBCCHHHHTTCCCCHHHHHHHHHH
T ss_pred eEEEeC-----CEEEEEEEEEecCCHHHHHHHHHHHHHHhcCCccccccccccchhheeeHHHHcCCCCCHHHHHHHHHH
Confidence 665443 36778988998874321 0 111 1 688988765 899999999998
Q ss_pred HHHHHHHHHHh---cChHHH--HHHHHHhcc
Q psy15214 190 YLIDSLKLFEH---YGFSIF--MKYWNFNHA 215 (265)
Q Consensus 190 ~l~~~~~~~~~---~~~~~~--~~~~~~~~~ 215 (265)
.|.+.+.. .+ ..+..+ +++..++..
T Consensus 241 ~f~~~~~~-t~~e~~~~~~~~~~~~~~~~~~ 270 (288)
T 2p0l_A 241 SLKQVGFN-DRLLMIRPDLVAEFDRFQAKSM 270 (288)
T ss_dssp HHHHHTCC-EEECCCCHHHHHHHHHHHHHHH
T ss_pred HHHHhcCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 88776532 11 233455 555555554
No 11
>1vqz_A Lipoate-protein ligase, putative; class II AARS and biotin synthetases fold, SUFE/NIFU fold, S genomics; HET: MSE; 1.99A {Streptococcus pneumoniae} SCOP: d.224.1.3 d.104.1.3
Probab=97.67 E-value=0.0012 Score=59.91 Aligned_cols=122 Identities=21% Similarity=0.271 Sum_probs=87.0
Q ss_pred CCCCCCeeeeCCCCceEEEEeeecCcCccccCchHHHHHHHHHHHHHHcCCccceeeCCcEEEcCeeEEEEEEEeeecCC
Q psy15214 65 RGRAGRIWYSEPEITLTFSLAWKFKISLKYLTSLPLVISIALSIALKKFGQKVQLKWPNDLLLNGNKFCGILIDTCIEKK 144 (265)
Q Consensus 65 rGR~gr~W~Sp~g~~L~~S~~~~~~~~~~~~~~l~l~~alav~~aL~~~~~~~~iKWPNDI~~~~~Ki~GIL~E~~~~~~ 144 (265)
|-+.|+.=+..+| +|.+|++.+..... .. ... ...-.|+++|+++|+++.+.=.|||+++|+||||+=.=...
T Consensus 80 R~sGGgaVyHd~G-~l~ys~i~~~~~~~-~~-~y~-~l~~~ii~aL~~lGi~a~~~gr~Di~v~grKIsG~Aqr~~~--- 152 (341)
T 1vqz_A 80 RISGGGAVYHDLN-NLNYTIISKEDENK-AF-DFK-SFSTPVINTLAQLGVKAEFTGRNDLEIDGKKFCGNAQAYIN--- 152 (341)
T ss_dssp CSSCSCCEEECTT-EEEEEEEEECCTTC-CC-SHH-HHHHHHHHHHHHTTCCEEEETTTEEEETTEEEEEEEEEEET---
T ss_pred ECCCCCeEEECCC-ceEEEEEEcCcccC-Cc-cHH-HHHHHHHHHHHHcCCeEEECCCCCEEEeCEEEEEEEEEEEC---
Confidence 4455666566678 79999998754321 12 233 34566889999999987776569999999999998665543
Q ss_pred CccEEEEEeccccCCCCCCC-------C-Cc--------c--ccccccccC--CCHHHHHHHHHHHHHHHH
Q psy15214 145 NNNWAIIGIGLNLGLPRILS-------K-KI--------N--IGNISELLN--MEHEKLLAVFICYLIDSL 195 (265)
Q Consensus 145 ~~~~~viGIGiNv~~~~~~~-------~-~~--------~--atsL~~~~g--~~~~~l~~~l~~~l~~~~ 195 (265)
..++.|.-||++.+.+.. + .+ + .|+|++..+ ++.+++.+.++++|.+.+
T Consensus 153 --~~~lhhgtllvd~Dl~~~~~~L~~~~~k~~~kgv~s~~~~VtsL~~~l~~~~~~~~v~~~l~~~f~~~~ 221 (341)
T 1vqz_A 153 --GRIMHHGCLLFDVDLSVLANALKVSKDKFESKGVKSVRARVTNIINELPKKITVEKFRDLLLEYMKKEY 221 (341)
T ss_dssp --TEEEEEEEEESSCCTTHHHHHBCCCSSCCEECSCCCCCCCBCCGGGTCSSCCCHHHHHHHHHHHHHHHC
T ss_pred --CEEEEEEEEEecCCHHHHHHHhCCCccchhhcccccchhhheeHHHhcCCCCCHHHHHHHHHHHHHHhc
Confidence 378889989887654311 1 11 1 688888765 899999999998887765
No 12
>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A {Thermoplasma acidophilum} SCOP: d.104.1.3 PDB: 2art_A* 2aru_A* 2c7i_A 2ars_A* 3r07_A
Probab=97.58 E-value=0.00085 Score=58.61 Aligned_cols=122 Identities=14% Similarity=0.197 Sum_probs=81.9
Q ss_pred CCCCeeeeCCCCceEEEEeeecCcCccccCchHHHHHHHHHHHHHHcCC----------ccceeeCCcEEEcCeeEEEEE
Q psy15214 67 RAGRIWYSEPEITLTFSLAWKFKISLKYLTSLPLVISIALSIALKKFGQ----------KVQLKWPNDLLLNGNKFCGIL 136 (265)
Q Consensus 67 R~gr~W~Sp~g~~L~~S~~~~~~~~~~~~~~l~l~~alav~~aL~~~~~----------~~~iKWPNDI~~~~~Ki~GIL 136 (265)
+.|+.=+..+| +|.+|++.+.+. . .....--...-.++++|+++|+ +....=.|||+++|+||||+=
T Consensus 74 sGGgavyhd~G-~l~ys~i~~~~~-~-~~~~~y~~l~~~ii~~l~~lGi~~~~~~~~~~~a~~~g~~dv~v~g~Ki~G~a 150 (262)
T 2c8m_A 74 TGGGAVYHDLG-DLNFSVVRSSDD-M-DITSMFRTMNEAVVNSLRILGLDARPGELNDVSIPVNKKTDIMAGEKKIMGAA 150 (262)
T ss_dssp SCSCCEEECTT-EEEEEEEEECSS-C-CHHHHHHHHHHHHHHHHHHTTCCCEECCBCCTTSSSSBTTSEEETTEEEEEEE
T ss_pred CCCceEEeCCC-cEEEEEEEcCCC-C-CHHHHHHHHHHHHHHHHHHcCCCcccccccCCcceECCcCcEEECCeEEEEee
Confidence 44444444457 899999987542 1 1110112345678899999998 565554699999999999986
Q ss_pred EEeeecCCCccEEEEEeccccCCCCCCC-------C-Ccc----------ccccccccCCCHHHHHHHHHHHHHHHHH
Q psy15214 137 IDTCIEKKNNNWAIIGIGLNLGLPRILS-------K-KIN----------IGNISELLNMEHEKLLAVFICYLIDSLK 196 (265)
Q Consensus 137 ~E~~~~~~~~~~~viGIGiNv~~~~~~~-------~-~~~----------atsL~~~~g~~~~~l~~~l~~~l~~~~~ 196 (265)
.=... ..++.|.-||++.+.... + .+. .|+|++..+++.+++.+.+.++|.+.+.
T Consensus 151 qr~~~-----~~~lhhgtllv~~d~~~~~~~l~~~~~~~~~~g~~s~~~~vtsL~~~~~~~~~~v~~~l~~~~~~~~~ 223 (262)
T 2c8m_A 151 GAMRK-----GAKLWHAAMLVHTDLDMLSAVLKVPDEKFRDKIAKSTRERVANVTDFVDVSIDEVRNALIRGFSETLH 223 (262)
T ss_dssp EEEET-----TEEEEEEEEESSCCHHHHHHHTC---------------CCBCCGGGTSCCCHHHHHHHHHHHHHHHHT
T ss_pred eEEeC-----CEEEEEEEEEecCCHHHHHHHhCCChhhhhhhccccHHhhhccHHHhcCCCHHHHHHHHHHHHHHHhC
Confidence 65543 378889999998653211 1 110 5788776558899999999988877663
No 13
>2p5i_A BH3822 protein; PFAM03099, structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 2.21A {Bacillus halodurans c-125} SCOP: d.104.1.3
Probab=97.46 E-value=0.0007 Score=60.05 Aligned_cols=123 Identities=18% Similarity=0.190 Sum_probs=80.0
Q ss_pred CCCCCCeeeeCCCCceEEEEeeecCcCccccCchHHHHHHHHHHHHHHcCCcccee--------eCCcEEEcCeeEEEEE
Q psy15214 65 RGRAGRIWYSEPEITLTFSLAWKFKISLKYLTSLPLVISIALSIALKKFGQKVQLK--------WPNDLLLNGNKFCGIL 136 (265)
Q Consensus 65 rGR~gr~W~Sp~g~~L~~S~~~~~~~~~~~~~~l~l~~alav~~aL~~~~~~~~iK--------WPNDI~~~~~Ki~GIL 136 (265)
|-+.|+.=+..+| +|.+|++.+..... .....--...-.++++|+++|+++... =.|||+++|+||||+=
T Consensus 90 R~sGGgaVyHdpG-~l~ysli~~~~~~~-~v~~~y~~l~~~ii~~L~~lGi~a~~~~~~~~~c~g~~dl~v~grKI~G~A 167 (288)
T 2p5i_A 90 RNSGGLAVVLDSG-ILNLSLVLKEEKGF-SIDDGYELMYELICSMFQDHREQIEAREIVGSYCPGSYDLSIDGKKFAGIS 167 (288)
T ss_dssp ESSCCCCEEECTT-EEEEEEEEECCTTC-CHHHHHHHHHHHHHHHTC---CCCEECCCTTSSSCCTTCEEETTEEEEEEE
T ss_pred EcCCCceEEECCC-cEEEEEEEcCCCCC-CHHHHHHHHHHHHHHHHHHcCCcEEEeccccCCCCCCccEEECCEEEEEEE
Confidence 4466666666678 89999998754211 111122233456788888898765542 2599999999999986
Q ss_pred EEeeecCCCccEEEEEeccccCCCCCC-------------CC--------Cc-c--ccccccccC--CCHHHHHHHHHHH
Q psy15214 137 IDTCIEKKNNNWAIIGIGLNLGLPRIL-------------SK--------KI-N--IGNISELLN--MEHEKLLAVFICY 190 (265)
Q Consensus 137 ~E~~~~~~~~~~~viGIGiNv~~~~~~-------------~~--------~~-~--atsL~~~~g--~~~~~l~~~l~~~ 190 (265)
.=... ..++.|+-||++.+... .+ .+ + .|||++..+ ++.+++.+.++++
T Consensus 168 qr~~~-----~~~lhh~~l~v~~dl~~~~~~l~~f~~~~l~~~~~ki~~~gi~~~~VtsL~~~l~~~~~~~~v~~~l~~~ 242 (288)
T 2p5i_A 168 QRRIR-----GGVAVQIYLCVSGSGAERAKMIRTFYDKAVAGQPTKFVYPRIKPETMASLSELLGQPHNVSDVLLKALMT 242 (288)
T ss_dssp EEEET-----TEEEEEEEEECSSCHHHHHHHHHHHHHHHHTTSCCSSCCCCCCGGGBCCHHHHHTSCCCHHHHHHHHHHH
T ss_pred EEEeC-----CEEEEEEEEEecCCHHHHHHHHHHHHHHhhcCccccccccccchhhceeHHHHcCCCCCHHHHHHHHHHH
Confidence 65443 36777999999864321 00 11 1 688888765 8999999999988
Q ss_pred HHHH
Q psy15214 191 LIDS 194 (265)
Q Consensus 191 l~~~ 194 (265)
|.+.
T Consensus 243 f~~~ 246 (288)
T 2p5i_A 243 LQQH 246 (288)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 8764
No 14
>3a7r_A Lipoate-protein ligase A; adenylate-forming enzyme, lipoic acid, ATP-binding, cytoplasm, nucleotide-binding, transferase, lipoyl; HET: LAQ; 2.05A {Escherichia coli} PDB: 1x2h_A* 3a7a_A* 1x2g_A*
Probab=97.32 E-value=0.0077 Score=54.50 Aligned_cols=119 Identities=18% Similarity=0.190 Sum_probs=84.4
Q ss_pred CCCCCeeeeCCCCceEEEEeeecCcCccccCchHHHHHHHHHHHHHHcCCccceeeCCcEEE---cC-eeEEEEEEEeee
Q psy15214 66 GRAGRIWYSEPEITLTFSLAWKFKISLKYLTSLPLVISIALSIALKKFGQKVQLKWPNDLLL---NG-NKFCGILIDTCI 141 (265)
Q Consensus 66 GR~gr~W~Sp~g~~L~~S~~~~~~~~~~~~~~l~l~~alav~~aL~~~~~~~~iKWPNDI~~---~~-~Ki~GIL~E~~~ 141 (265)
-+.|..=+..+| +|.+|++.+... .. . -...-.|+++|+++|+++.+.=.|||++ +| +||||+=.=...
T Consensus 71 ~sGGgaVyHd~G-~l~ys~i~~~~~-~~----y-~~l~~~ii~~L~~lGi~a~~~g~~di~v~~~~g~rKIsG~Aqr~~~ 143 (337)
T 3a7r_A 71 SSGGGAVFHDLG-NTCFTFMAGKPE-YD----K-TISTSIVLNALNALGVSAEASGRNDLVVKTVEGDRKVSGSAYRETK 143 (337)
T ss_dssp SSCSCCEEECTT-EEEEEEEEETTT-CC----H-HHHHHHHHHHHHHTTCCEEEETTTEEEECCTTSCEEEEEEEEEECS
T ss_pred cCCCccEEECCC-cEEEEEEECCcc-cC----H-HHHHHHHHHHHHHcCCeEEECCCCcEEEEeCCCceEEEEEEEEEEC
Confidence 344555555568 899999987543 11 2 2345678899999999877766799999 89 999998655432
Q ss_pred cCCCccEEEEEeccccCCCCCC-------CCC-c--------c--ccccccccC-CCHHHHHHHHHHHHHHHHH
Q psy15214 142 EKKNNNWAIIGIGLNLGLPRIL-------SKK-I--------N--IGNISELLN-MEHEKLLAVFICYLIDSLK 196 (265)
Q Consensus 142 ~~~~~~~~viGIGiNv~~~~~~-------~~~-~--------~--atsL~~~~g-~~~~~l~~~l~~~l~~~~~ 196 (265)
..++.|.-||++...+. +++ + + .|+|.+..+ ++.+++.+.++++|.+.+.
T Consensus 144 -----~~~lhhgtll~~~dl~~l~~~l~~~~~~~~~kgv~sv~~~vt~L~~~~~~~~~~~v~~~l~~~f~~~~~ 212 (337)
T 3a7r_A 144 -----DRGFHHGTLLLNADLSRLANYLNPDKKKLAAKGITSVRSRVTNLTELLPGITHEQVCEAITEAFFAHYG 212 (337)
T ss_dssp -----SEEEEEEEEESSCCHHHHHHHTSCCCCEEEECSCCCCCCCBCCGGGTCTTCCHHHHHHHHHHHHHHHHT
T ss_pred -----CEEEEEEEEEecCCHHHHHHHhcCChhhhhhcCCCchhhheeEHHHhCCCCCHHHHHHHHHHHHHHHcC
Confidence 37888888888765321 011 1 1 478887766 9999999999998887654
No 15
>2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos taurus} PDB: 3a7u_A
Probab=96.58 E-value=0.019 Score=52.09 Aligned_cols=118 Identities=20% Similarity=0.100 Sum_probs=75.9
Q ss_pred CCCCeeeeCCCCceEEEEeeecCcCccccCchHHHHHHHHHHHHHHcC--CccceeeCCcEEEcC-eeEEEEEEEeeecC
Q psy15214 67 RAGRIWYSEPEITLTFSLAWKFKISLKYLTSLPLVISIALSIALKKFG--QKVQLKWPNDLLLNG-NKFCGILIDTCIEK 143 (265)
Q Consensus 67 R~gr~W~Sp~g~~L~~S~~~~~~~~~~~~~~l~l~~alav~~aL~~~~--~~~~iKWPNDI~~~~-~Ki~GIL~E~~~~~ 143 (265)
+.|+.=+..+| +|.+|++.+.+. . . .. ...-.++++|+++| +++...=.|||+++| +||||+=. ....
T Consensus 75 sGGgaVyHd~G-~l~ys~i~~~~~-~---~-~~-~~~~~ii~~L~~lG~~i~a~~~g~~di~v~g~~KIsG~Aq-~~~~- 145 (347)
T 2e5a_A 75 SGGGTVYHDMG-NINLTFFTTKKK-Y---D-RM-ENLKLVVRALKAVHPHLDVQATKRFDLLLDGQFKISGTAS-KIGR- 145 (347)
T ss_dssp SCSCCEEECTT-EEEEEEEECGGG-C---C-HH-HHHHHHHHHHHHHSTTCCEEECTTSCEEETTTEEEECEEE-EECS-
T ss_pred CCCCcEEECCC-cEEEEEEecccc-C---C-HH-HHHHHHHHHHHHhCCceEEEECCCCcEEECCCcEEEEEeE-EeeC-
Confidence 44555555578 799999886432 1 1 11 23556888999998 777766459999998 99999944 2222
Q ss_pred CCccEEEEEeccccCCCCCC--------CCCc--------c--ccccccccC-CCHHHHHHHHHHHHHHHHH
Q psy15214 144 KNNNWAIIGIGLNLGLPRIL--------SKKI--------N--IGNISELLN-MEHEKLLAVFICYLIDSLK 196 (265)
Q Consensus 144 ~~~~~~viGIGiNv~~~~~~--------~~~~--------~--atsL~~~~g-~~~~~l~~~l~~~l~~~~~ 196 (265)
..++.+.-||++.+.+. +..+ . .++|.+... ++.+++.+.++++|.+.+.
T Consensus 146 ---~~~lhhgtll~~~d~~~l~~~l~~~~~~~~~kgv~Sv~~~v~~L~~~~~~~~~~~v~~~l~~~f~~~~~ 214 (347)
T 2e5a_A 146 ---NAAYHHCTLLCGTDGTFLSSLLKSPYQGIRSNATASTPALVKNLMEKDPTLTCEVVINAVATEYATSHQ 214 (347)
T ss_dssp ---SCEEEEEEEESSCCHHHHHHHTSCCCCSEEECSCCCCCCCBCCHHHHCTTCCHHHHHHHHHHHHHHHHT
T ss_pred ---CeEEEEEEEEEecCHHHHHHHHccCchhhhhhcccchHHhhccHHHhCCCCCHHHHHHHHHHHHHHHhC
Confidence 24555666777654321 1112 1 344444433 8899999999998887764
No 16
>2ddz_A 190AA long hypothetical protein; hexamer, structural genomics, NPPSFA, national project on PR structural and functional analyses; 2.24A {Pyrococcus horikoshii} SCOP: d.104.1.4
Probab=95.62 E-value=0.17 Score=41.61 Aligned_cols=110 Identities=18% Similarity=0.224 Sum_probs=69.4
Q ss_pred ceEEEEeeecC-c-CccccCchHHHHHHHHHHHHHHcCCccceeeCCcEEEcCeeEEEEEEEeeecCCCccEEEEEeccc
Q psy15214 79 TLTFSLAWKFK-I-SLKYLTSLPLVISIALSIALKKFGQKVQLKWPNDLLLNGNKFCGILIDTCIEKKNNNWAIIGIGLN 156 (265)
Q Consensus 79 ~L~~S~~~~~~-~-~~~~~~~l~l~~alav~~aL~~~~~~~~iKWPNDI~~~~~Ki~GIL~E~~~~~~~~~~~viGIGiN 156 (265)
.-++-+++.-+ . .+..+....=+...-+++.|+.+|.++. +=-.|||++++|+. +=+-+.. +...-|=+|||
T Consensus 66 ~dmlhFIvEhFD~~dl~~~y~rQRLlv~i~kE~L~~~g~~~~-R~GDDLy~~~~KLS-VSIAt~s----~vS~kIH~GiN 139 (190)
T 2ddz_A 66 DDMVHYILELFWHPDILLASSLQKLLIARLVELLWNYGIEAS-RRGDDIYVNGRKLS-ISIATVS----PVSIKIHIGLN 139 (190)
T ss_dssp EEEEEEEEEECSCCCHHHHHHHHHHHHHHHHHHHHTTTCCEE-EETTEEEETTEECE-EEEEEEC----SSCEEEEEEEE
T ss_pred ccceEEEEeeCCCccHHHHHHHHHHHHHHHHHHHHHcCCeee-eccCeeeECCCEEE-EEEEecC----cchheEEEEEe
Confidence 44566666533 2 2222222222334456788998887664 44899999999997 2222222 23577899999
Q ss_pred cCCCCCCCCCccccccccccCCCHHHHHHHHHHHHHHHHH
Q psy15214 157 LGLPRILSKKINIGNISELLNMEHEKLLAVFICYLIDSLK 196 (265)
Q Consensus 157 v~~~~~~~~~~~atsL~~~~g~~~~~l~~~l~~~l~~~~~ 196 (265)
|... ..|+..++.+|.+. |++..++++.+...+..-+.
T Consensus 140 V~s~-g~P~~V~aigL~dl-Gi~i~~~~~~i~~~y~~E~~ 177 (190)
T 2ddz_A 140 VKTV-GVPPGVDAIGLEEL-GIDPTEFMERSAKALVEEIE 177 (190)
T ss_dssp SCCS-SCCSSSCBCCHHHH-TCCHHHHHHHHHHHHHHHHH
T ss_pred eccc-CCCCCccccCHHHc-CCCHHHHHHHHHHHHHHHHH
Confidence 9863 33344668888876 67888888888765544433
No 17
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=87.33 E-value=4.1 Score=27.93 Aligned_cols=49 Identities=18% Similarity=0.207 Sum_probs=37.5
Q ss_pred ccCCCEEEEEEC-CeEEEEEEEeECCCceEEEEeCC----ceEEEEeeeEEEee
Q psy15214 215 AYTNKTVDILKL-NKIQKGIVIGINKNGCLLLNTKF----GKITISSGDVSLRL 263 (265)
Q Consensus 215 ~~~gk~V~v~~~-~~~~~G~~~gI~~~G~L~l~~~~----g~~~~~~Gev~l~~ 263 (265)
.+.|++|.|... +..+.|++.++|..-.+++++.. +.....-|.+.+|.
T Consensus 11 ~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG 64 (75)
T 1h64_1 11 RSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRG 64 (75)
T ss_dssp TTTTSEEEEEETTSEEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECG
T ss_pred HHCCCEEEEEECCCCEEEEEEEEEeCCCCeEEeeEEEEeeCCceeECCEEEECC
Confidence 457999999876 67799999999999999997542 33345557777664
No 18
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=85.21 E-value=3.8 Score=29.28 Aligned_cols=35 Identities=14% Similarity=0.100 Sum_probs=30.2
Q ss_pred hcccCCCEEEEEEC-CeEEEEEEEeECCCceEEEEe
Q psy15214 213 NHAYTNKTVDILKL-NKIQKGIVIGINKNGCLLLNT 247 (265)
Q Consensus 213 ~~~~~gk~V~v~~~-~~~~~G~~~gI~~~G~L~l~~ 247 (265)
+..++|++|.|... +..+.|++.++|....|++.+
T Consensus 9 L~~~~~k~V~V~l~~gr~~~G~L~~~D~~mNlvL~d 44 (91)
T 1d3b_B 9 MLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCD 44 (91)
T ss_dssp CGGGTTSEEEEEETTCCEEEEEEEECCTTCCEEEEE
T ss_pred HHHHcCCcEEEEECCCeEEEEEEEEECCCCeEEecC
Confidence 34578999999876 677999999999999999974
No 19
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=84.53 E-value=6.2 Score=27.08 Aligned_cols=49 Identities=29% Similarity=0.148 Sum_probs=37.6
Q ss_pred ccCCCEEEEEEC-CeEEEEEEEeECCCceEEEEeC----CceEEEEeeeEEEee
Q psy15214 215 AYTNKTVDILKL-NKIQKGIVIGINKNGCLLLNTK----FGKITISSGDVSLRL 263 (265)
Q Consensus 215 ~~~gk~V~v~~~-~~~~~G~~~gI~~~G~L~l~~~----~g~~~~~~Gev~l~~ 263 (265)
.+.|++|.|... +..+.|++.++|..-.|++.+. ++.....-|.+.+|.
T Consensus 11 ~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG 64 (75)
T 4emk_B 11 KVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDAFIRG 64 (75)
T ss_dssp HTTTSEEEEECTTSCEEEEEEEEECTTCEEEEEEEEEEETTEEEEEEEEEEEEG
T ss_pred HhCCCeEEEEEcCCcEEEEEEEEEcCcceEEEccEEEEecCCcccEecEEEEcC
Confidence 357999999876 6679999999999999999743 233445567777774
No 20
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=83.96 E-value=5.2 Score=28.69 Aligned_cols=46 Identities=22% Similarity=0.253 Sum_probs=34.7
Q ss_pred hcccCCCEEEEEEC-CeEEEEEEEeECC-CceEEEEe--CCc--eEEEEeee
Q psy15214 213 NHAYTNKTVDILKL-NKIQKGIVIGINK-NGCLLLNT--KFG--KITISSGD 258 (265)
Q Consensus 213 ~~~~~gk~V~v~~~-~~~~~G~~~gI~~-~G~L~l~~--~~g--~~~~~~Ge 258 (265)
...+.||+|.+... ++.++|++.++|+ .-.+++.. +++ .+.+..|+
T Consensus 12 l~~li~KeV~V~l~dg~~y~G~l~tvDp~s~sIvL~n~~~~~~~~~~iI~G~ 63 (86)
T 1y96_A 12 WQDYIYKEVRVTASEKNEYKGWVLTTDPVSANIVLVNFLEDGSMSVTGIMGH 63 (86)
T ss_dssp HHHTTTCEEEEEETTTEEEEEEEEEECTTTCCEEEEEECTTSCEEEEEECGG
T ss_pred HHhhcCCEEEEEEcCCCEEEEEEEEECCCceEEEEeecccCCeEEEEEEecc
Confidence 34578999999987 6679999999995 66777765 233 46677776
No 21
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=83.73 E-value=5 Score=27.60 Aligned_cols=49 Identities=18% Similarity=0.156 Sum_probs=37.2
Q ss_pred ccCCCEEEEEEC-CeEEEEEEEeECCCceEEEEeCC----ceEEEEeeeEEEee
Q psy15214 215 AYTNKTVDILKL-NKIQKGIVIGINKNGCLLLNTKF----GKITISSGDVSLRL 263 (265)
Q Consensus 215 ~~~gk~V~v~~~-~~~~~G~~~gI~~~G~L~l~~~~----g~~~~~~Gev~l~~ 263 (265)
.+.|++|.|... +..+.|++.++|..-.+++++.. +.....-|.+.+|.
T Consensus 11 ~~~~~~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG 64 (77)
T 1i4k_A 11 RSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRG 64 (77)
T ss_dssp TTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECG
T ss_pred HhCCCEEEEEEcCCCEEEEEEEEEcCCCCeEEeeEEEEecCCcEeECCEEEECC
Confidence 356999999876 67799999999999999997532 23445557777664
No 22
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=82.98 E-value=8.4 Score=27.00 Aligned_cols=48 Identities=25% Similarity=0.253 Sum_probs=36.8
Q ss_pred cCCCEEEEEEC-CeEEEEEEEeECCCceEEEEeCC----ceEEEEeeeEEEee
Q psy15214 216 YTNKTVDILKL-NKIQKGIVIGINKNGCLLLNTKF----GKITISSGDVSLRL 263 (265)
Q Consensus 216 ~~gk~V~v~~~-~~~~~G~~~gI~~~G~L~l~~~~----g~~~~~~Gev~l~~ 263 (265)
+.|++|.|... +..+.|++.++|..-.+++++.. +...-.-|.+.+|.
T Consensus 23 ~~~~~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~IRG 75 (83)
T 1mgq_A 23 SLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRRLGTVLIRG 75 (83)
T ss_dssp TTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECG
T ss_pred hCCCEEEEEEcCCcEEEEEEEEECCCceeEEccEEEEecCCcccCCCEEEECC
Confidence 46899999876 67799999999999999997532 23445557777764
No 23
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=82.43 E-value=4.8 Score=28.10 Aligned_cols=49 Identities=18% Similarity=0.140 Sum_probs=36.4
Q ss_pred ccCCCEEEEEEC-CeEEEEEEEeECCCceEEEEeCC----ceEEEEeeeEEEee
Q psy15214 215 AYTNKTVDILKL-NKIQKGIVIGINKNGCLLLNTKF----GKITISSGDVSLRL 263 (265)
Q Consensus 215 ~~~gk~V~v~~~-~~~~~G~~~gI~~~G~L~l~~~~----g~~~~~~Gev~l~~ 263 (265)
.+.|++|.|... +..+.|++.++|..-.+++++.. +.....-|.+.+|.
T Consensus 16 ~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG 69 (81)
T 1th7_A 16 ESLNNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSDGSGKKLGTIVIRG 69 (81)
T ss_dssp HHTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEECSSSCEEEEEEEEECG
T ss_pred HhCCCeEEEEEcCCcEEEEEEEEEcCCCCEEEccEEEEecCCceeECCEEEECC
Confidence 357899999876 67799999999999999997432 22344556666653
No 24
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=81.80 E-value=8.7 Score=26.40 Aligned_cols=49 Identities=18% Similarity=0.214 Sum_probs=37.3
Q ss_pred ccCCCEEEEEEC-C-eEEEEEEEeECCCceEEEEeCC----ceEEEEeeeEEEee
Q psy15214 215 AYTNKTVDILKL-N-KIQKGIVIGINKNGCLLLNTKF----GKITISSGDVSLRL 263 (265)
Q Consensus 215 ~~~gk~V~v~~~-~-~~~~G~~~gI~~~G~L~l~~~~----g~~~~~~Gev~l~~ 263 (265)
.+.|++|.|... + ..+.|++.++|+.-.+++++.. +.....-|.+.+|.
T Consensus 12 ~~~~~~v~V~lk~g~~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG 66 (77)
T 1ljo_A 12 SMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKGEEKVRSLGEIVLRG 66 (77)
T ss_dssp HTTTSEEEEEETTCSSEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECG
T ss_pred HHCCCEEEEEEeCCCEEEEEEEEEECCcceEEEeeEEEEecCCcEeECCeEEEeC
Confidence 357999999887 4 5899999999999999997532 33445567777764
No 25
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=81.53 E-value=7 Score=28.35 Aligned_cols=48 Identities=10% Similarity=0.158 Sum_probs=35.8
Q ss_pred cCCCEEEEEEC-CeEEEEEEEeECCCceEEEEeC-----CceEEEEeeeEEEee
Q psy15214 216 YTNKTVDILKL-NKIQKGIVIGINKNGCLLLNTK-----FGKITISSGDVSLRL 263 (265)
Q Consensus 216 ~~gk~V~v~~~-~~~~~G~~~gI~~~G~L~l~~~-----~g~~~~~~Gev~l~~ 263 (265)
++|++|.|... +..+.|++.|+|..-.|++++. ++.....-|.+.+|.
T Consensus 28 ~l~k~V~V~Lk~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~~~~~lg~v~IRG 81 (94)
T 4emk_A 28 CIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSEMLLNG 81 (94)
T ss_dssp TTTSEEEEEESSSEEEEEEEEEECTTCCEEEEEEEEEETTTCCEEEEEEEEECS
T ss_pred HcCCeEEEEECCCcEEEEEEEEEcccCCeEeeeEEEEecCCCcEeEcCEEEEcC
Confidence 46899999876 6779999999999999999753 222234557777664
No 26
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=80.86 E-value=10 Score=26.10 Aligned_cols=48 Identities=15% Similarity=0.105 Sum_probs=37.0
Q ss_pred ccCCCEEEEEEC-CeEEEEEEEeECCCceEEEEeC-----CceEEEEeeeEEEee
Q psy15214 215 AYTNKTVDILKL-NKIQKGIVIGINKNGCLLLNTK-----FGKITISSGDVSLRL 263 (265)
Q Consensus 215 ~~~gk~V~v~~~-~~~~~G~~~gI~~~G~L~l~~~-----~g~~~~~~Gev~l~~ 263 (265)
...|++|.|... +..++|++.++|+.=.+.+++. +|. ...-|++.+|.
T Consensus 12 ~~~g~~V~VeLk~g~~~~G~L~~~D~~MNl~L~~~~e~~~~~~-~~~lg~v~IRG 65 (75)
T 1d3b_A 12 EAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGR-VAQLEQVYIRG 65 (75)
T ss_dssp HTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTSC-EEEEEEEEECG
T ss_pred HhCCCEEEEEECCCcEEEEEEEEEccceeEEEEeEEEECCCCc-EEEcCeEEEeC
Confidence 357999999876 6779999999999999999742 332 45567777764
No 27
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=80.68 E-value=7.5 Score=28.81 Aligned_cols=49 Identities=12% Similarity=0.014 Sum_probs=36.4
Q ss_pred ccCCCEEEEEEC-CeEEEEEEEeECCCceEEEEeC-----CceEEEEeeeEEEee
Q psy15214 215 AYTNKTVDILKL-NKIQKGIVIGINKNGCLLLNTK-----FGKITISSGDVSLRL 263 (265)
Q Consensus 215 ~~~gk~V~v~~~-~~~~~G~~~gI~~~G~L~l~~~-----~g~~~~~~Gev~l~~ 263 (265)
.+.|++|.|... +..+.|++.++|..=.|++++. +|.....-|++.+|.
T Consensus 23 ~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~e~~~dg~~~~~lg~v~IRG 77 (105)
T 4emh_A 23 ATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIRG 77 (105)
T ss_dssp ---CCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTSCEEEEEEEEEECG
T ss_pred HhCCCEEEEEECCCCEEEEEEEEEcCCceEEEEEEEEEccCCceeeEcCeEEEeC
Confidence 357999999886 6679999999999999998642 454445568887774
No 28
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=80.54 E-value=2.7 Score=35.69 Aligned_cols=37 Identities=14% Similarity=0.040 Sum_probs=30.5
Q ss_pred HhcccCCCEEEEEEC-CeEEEEEEEeECCCceEEEEeC
Q psy15214 212 FNHAYTNKTVDILKL-NKIQKGIVIGINKNGCLLLNTK 248 (265)
Q Consensus 212 ~~~~~~gk~V~v~~~-~~~~~G~~~gI~~~G~L~l~~~ 248 (265)
++..++|++|.|... +..+.|++.++|..-.|+|++.
T Consensus 8 kL~klIdKrV~V~LkdGRel~GtLkgFDq~MNLVL~Da 45 (231)
T 3pgw_B 8 KMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDC 45 (231)
T ss_pred HHHHhcCCeEEEEECCCcEEEEEEEEEcccccEEecCE
Confidence 344568999999876 6679999999999999999643
No 29
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=80.39 E-value=6.8 Score=27.33 Aligned_cols=49 Identities=18% Similarity=0.145 Sum_probs=36.2
Q ss_pred ccCCCEEEEEEC-CeEEEEEEEeECCCceEEEEeCC---ceEEEEeeeEEEee
Q psy15214 215 AYTNKTVDILKL-NKIQKGIVIGINKNGCLLLNTKF---GKITISSGDVSLRL 263 (265)
Q Consensus 215 ~~~gk~V~v~~~-~~~~~G~~~gI~~~G~L~l~~~~---g~~~~~~Gev~l~~ 263 (265)
.+.|++|.|... +..+.|++.++|..-.+++++.. +.....-|.+.+|.
T Consensus 18 ~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~lg~v~iRG 70 (81)
T 1i8f_A 18 DSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEIIDGNVYKRGTMVVRG 70 (81)
T ss_dssp TTTTSEEEEEEGGGEEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEECG
T ss_pred HHCCCeEEEEEcCCcEEEEEEEEEcCCCeeEEccEEEEcCCcccCCCEEEECC
Confidence 456899999876 67799999999999999997532 22344556666653
No 30
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=78.86 E-value=5.2 Score=27.62 Aligned_cols=50 Identities=16% Similarity=0.198 Sum_probs=33.0
Q ss_pred cccCCCEEEEEEC-CeEEEEEEEeECCCceEEEEeCCc----eEEEEeeeEEEee
Q psy15214 214 HAYTNKTVDILKL-NKIQKGIVIGINKNGCLLLNTKFG----KITISSGDVSLRL 263 (265)
Q Consensus 214 ~~~~gk~V~v~~~-~~~~~G~~~gI~~~G~L~l~~~~g----~~~~~~Gev~l~~ 263 (265)
..+.|++|.|... +..+.|++.++|..-.|++.+... .....-|.+.+|.
T Consensus 10 ~~~~~k~V~V~Lk~gr~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~lg~v~iRG 64 (76)
T 3s6n_G 10 KKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRG 64 (76)
T ss_dssp ----CCEEEEEETTTEEEEEEEEEECTTCCEEEEEEEECCCC----CBSSEEECS
T ss_pred HHhCCCeEEEEECCCcEEEEEEEEECCcceEEEeceEEEccCCcEeEcCEEEECC
Confidence 3467999999887 677999999999999999975321 2234446666653
No 31
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=78.59 E-value=7.8 Score=27.48 Aligned_cols=48 Identities=21% Similarity=0.218 Sum_probs=36.5
Q ss_pred cCCCEEEEEEC-CeEEEEEEEeECCCceEEEEeC----CceEEEEeeeEEEee
Q psy15214 216 YTNKTVDILKL-NKIQKGIVIGINKNGCLLLNTK----FGKITISSGDVSLRL 263 (265)
Q Consensus 216 ~~gk~V~v~~~-~~~~~G~~~gI~~~G~L~l~~~----~g~~~~~~Gev~l~~ 263 (265)
+.|++|.|... +..+.|++.++|..-.|++.+. +|.....-|.+.+|.
T Consensus 14 ~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~g~~~~~lg~v~IRG 66 (86)
T 3s6n_F 14 LTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRC 66 (86)
T ss_dssp HTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETTEEEEEESSEEECG
T ss_pred hCCCeEEEEEcCCeEEEEEEEEEcCceEEEEeeEEEEcCCceeeEccEEEEeC
Confidence 46999999876 6679999999999999999743 233344557777764
No 32
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=77.47 E-value=11 Score=27.23 Aligned_cols=51 Identities=20% Similarity=0.203 Sum_probs=37.9
Q ss_pred hcccCCCEEEEEEC-C-eEEEEEEEeECCCceEEEEeC----CceEEEEeeeEEEee
Q psy15214 213 NHAYTNKTVDILKL-N-KIQKGIVIGINKNGCLLLNTK----FGKITISSGDVSLRL 263 (265)
Q Consensus 213 ~~~~~gk~V~v~~~-~-~~~~G~~~gI~~~G~L~l~~~----~g~~~~~~Gev~l~~ 263 (265)
+..+.|++|.|... + ..+.|++.++|..=.+++++. +|.....-|.+.+|.
T Consensus 26 L~~~i~k~V~V~Lk~g~~~~~G~L~~~D~~MNlvL~d~~E~~~~~~~~~lg~v~IRG 82 (93)
T 1n9r_A 26 LKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAGVSHGTLGEIFIRC 82 (93)
T ss_dssp CGGGTTSEEEEEESSTTEEEEEEEEECCTTTCEEEEEEEEEETTEEEEECCSEEECG
T ss_pred HHHhCCCEEEEEEcCCCEEEEEEEEEEccccEEEEeeEEEEcCCCeEeEcCEEEEcC
Confidence 33467999999876 5 579999999999999999743 333444556776663
No 33
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=76.55 E-value=12 Score=27.06 Aligned_cols=35 Identities=11% Similarity=0.124 Sum_probs=29.9
Q ss_pred cccCCCEEEEEEC-CeEEEEEEEeECCCceEEEEeC
Q psy15214 214 HAYTNKTVDILKL-NKIQKGIVIGINKNGCLLLNTK 248 (265)
Q Consensus 214 ~~~~gk~V~v~~~-~~~~~G~~~gI~~~G~L~l~~~ 248 (265)
..++|++|.|... +..+.|++.++|..-.|++.+.
T Consensus 16 ~~~i~k~V~V~Lk~gr~~~G~L~~fD~~mNlVL~d~ 51 (96)
T 3bw1_A 16 KLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDA 51 (96)
T ss_dssp GGGTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEE
T ss_pred HHHCCCeEEEEECCCcEEEEEEEEECCCCcEEEcCE
Confidence 3568999999876 6779999999999999999743
No 34
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=68.50 E-value=11 Score=28.29 Aligned_cols=39 Identities=15% Similarity=0.160 Sum_probs=28.5
Q ss_pred HHHhcccCCCEEEEEEC-CeEEEEEEEeECCCceEEEEeC
Q psy15214 210 WNFNHAYTNKTVDILKL-NKIQKGIVIGINKNGCLLLNTK 248 (265)
Q Consensus 210 ~~~~~~~~gk~V~v~~~-~~~~~G~~~gI~~~G~L~l~~~ 248 (265)
...+..++|++|.|... +..+.|++.++|..-.|++.+.
T Consensus 25 i~~L~~~l~k~V~V~L~dGr~~~G~L~~fD~~mNLVL~d~ 64 (113)
T 4emk_C 25 ILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDV 64 (113)
T ss_dssp -------CCSEEEEEETTSCEEEEEEEEECTTCCEEEEEE
T ss_pred HHHHHHHcCCcEEEEEeCCeEEEEEEEEEcCcccEEEeeE
Confidence 34455568999999886 6779999999999999999753
No 35
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=64.38 E-value=18 Score=25.97 Aligned_cols=32 Identities=9% Similarity=0.099 Sum_probs=28.0
Q ss_pred cCCCEEEEEEC-CeEEEEEEEeECCCceEEEEe
Q psy15214 216 YTNKTVDILKL-NKIQKGIVIGINKNGCLLLNT 247 (265)
Q Consensus 216 ~~gk~V~v~~~-~~~~~G~~~gI~~~G~L~l~~ 247 (265)
..|++|.|... +..+.|++.++|..-.|++.+
T Consensus 17 ~~~~~V~V~l~~gr~~~G~L~~~D~~mNlvL~d 49 (93)
T 4emg_A 17 SLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGD 49 (93)
T ss_dssp TTTSEEEEEETTTEEEEEEEEEECTTCCEEEEE
T ss_pred hCCCEEEEEECCCcEEEEEEEEECCcccEEeec
Confidence 36999999876 677999999999999999974
No 36
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=59.47 E-value=30 Score=26.32 Aligned_cols=48 Identities=15% Similarity=0.105 Sum_probs=36.6
Q ss_pred ccCCCEEEEEEC-CeEEEEEEEeECCCceEEEEeC-----CceEEEEeeeEEEee
Q psy15214 215 AYTNKTVDILKL-NKIQKGIVIGINKNGCLLLNTK-----FGKITISSGDVSLRL 263 (265)
Q Consensus 215 ~~~gk~V~v~~~-~~~~~G~~~gI~~~G~L~l~~~-----~g~~~~~~Gev~l~~ 263 (265)
.+.|++|.|... +..+.|++.++|..=.+.+++- +|. ...-|++.+|.
T Consensus 12 ~~~gk~V~VeLknG~~~~G~L~~~D~~MNi~L~dv~e~~~~g~-~~~l~~v~IRG 65 (126)
T 2y9a_D 12 EAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGR-VAQLEQVYIRG 65 (126)
T ss_dssp SCSSCEEEEEESSCCEEEEEEEEECTTSCEEEEEEEEECTTSC-CEEEEEEEECG
T ss_pred HhCCCEEEEEECCCcEEEEEEEEEcCceEEEEeeEEEEcCCCc-EeecccEEEeC
Confidence 468999999876 6679999999999999998642 342 34556777763
No 37
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=57.84 E-value=31 Score=25.87 Aligned_cols=48 Identities=17% Similarity=0.196 Sum_probs=34.8
Q ss_pred ccCCCEEEEEEC-CeEEEEEEEeECCCceEEEEeCC----ceEEEEeeeEEEe
Q psy15214 215 AYTNKTVDILKL-NKIQKGIVIGINKNGCLLLNTKF----GKITISSGDVSLR 262 (265)
Q Consensus 215 ~~~gk~V~v~~~-~~~~~G~~~gI~~~G~L~l~~~~----g~~~~~~Gev~l~ 262 (265)
.+.|++|.|... +..+.|++.++|+.=.|++++.. +.....-|.+.+|
T Consensus 9 ~~~gk~V~V~Lk~g~~~~G~L~~~D~~MNlvL~d~~e~~~~~~~~~lg~v~IR 61 (119)
T 1b34_A 9 KLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIR 61 (119)
T ss_dssp TCTTCEEEEEETTCCEEEEEEEEECTTCCEEEEEEEEECTTSCCEEEEEEEEC
T ss_pred HhCCCEEEEEEcCCCEEEEEEEEEcccceEEeccEEEecCCCceeEcceEEEc
Confidence 457999999876 67799999999999999997432 1122344566555
No 38
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=56.12 E-value=51 Score=23.37 Aligned_cols=52 Identities=17% Similarity=0.028 Sum_probs=41.3
Q ss_pred HhcccCCCEEEEEEC-CeEEEEEEEeECCCceEEEEeCCc-eEEEEeeeEEEee
Q psy15214 212 FNHAYTNKTVDILKL-NKIQKGIVIGINKNGCLLLNTKFG-KITISSGDVSLRL 263 (265)
Q Consensus 212 ~~~~~~gk~V~v~~~-~~~~~G~~~gI~~~G~L~l~~~~g-~~~~~~Gev~l~~ 263 (265)
...+..|.+|...-+ +..|.|++..|+.+|.-.|.=.+| .+++...+|+--+
T Consensus 19 ~~~f~vGd~VlArW~D~~yYPAkI~sV~~~~~YtV~F~DG~~etvk~~~IKp~~ 72 (85)
T 3qii_A 19 SSEFQINEQVLACWSDCRFYPAKVTAVNKDGTYTVKFYDGVVQTVKHIHVKAFS 72 (85)
T ss_dssp --CCCTTCEEEEECTTSCEEEEEEEEECTTSEEEEEETTSCEEEEEGGGEEECC
T ss_pred CcccccCCEEEEEeCCCCEeeEEEEEECCCCeEEEEEeCCCeEEecHHHcccCC
Confidence 345668999988876 566899999999999999987778 7888888876543
No 39
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=55.74 E-value=19 Score=27.58 Aligned_cols=34 Identities=12% Similarity=0.309 Sum_probs=29.4
Q ss_pred ccCCCEEEEEEC-CeEEEEEEEeECCCceEEEEeC
Q psy15214 215 AYTNKTVDILKL-NKIQKGIVIGINKNGCLLLNTK 248 (265)
Q Consensus 215 ~~~gk~V~v~~~-~~~~~G~~~gI~~~G~L~l~~~ 248 (265)
.+.|++|.|... +..+.|++.++|..=.|++.+.
T Consensus 7 ~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~ 41 (130)
T 1m5q_A 7 NLLGREVQVVLSNGEVYKGVLHAVDNQLNIVLANA 41 (130)
T ss_dssp HTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEE
T ss_pred HhCCCeEEEEECCCcEEEEEEEEEcccceeEEeeE
Confidence 468999999876 6679999999999999999754
No 40
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=54.47 E-value=47 Score=22.43 Aligned_cols=49 Identities=18% Similarity=0.040 Sum_probs=39.6
Q ss_pred ccCCCEEEEEEC-CeEEEEEEEeECCCceEEEEeCCc-eEEEEeeeEEEee
Q psy15214 215 AYTNKTVDILKL-NKIQKGIVIGINKNGCLLLNTKFG-KITISSGDVSLRL 263 (265)
Q Consensus 215 ~~~gk~V~v~~~-~~~~~G~~~gI~~~G~L~l~~~~g-~~~~~~Gev~l~~ 263 (265)
+..|.+|...-+ +..+.|++..|+.++.-.|.=.+| .+++...+|...+
T Consensus 7 ~~vGd~vmArW~D~~yYpA~I~si~~~~~Y~V~F~dG~~etvk~~~ikp~~ 57 (67)
T 3p8d_A 7 FQINEQVLACWSDCRFYPAKVTAVNKDGTYTVKFYDGVVQTVKHIHVKAFS 57 (67)
T ss_dssp CCTTCEEEEECTTSCEEEEEEEEECTTSEEEEEETTSCEEEEEGGGEEECC
T ss_pred cccCCEEEEEcCCCCEeeEEEEEECCCCeEEEEEeCCceEEEeHHHcccCC
Confidence 346888888776 566899999999999999987768 7888888887544
No 41
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=49.12 E-value=47 Score=24.98 Aligned_cols=33 Identities=27% Similarity=0.404 Sum_probs=24.7
Q ss_pred ccCCCEEEEEECCeEEEEEEEeECCCc-eEEEEeCCc-eEEE
Q psy15214 215 AYTNKTVDILKLNKIQKGIVIGINKNG-CLLLNTKFG-KITI 254 (265)
Q Consensus 215 ~~~gk~V~v~~~~~~~~G~~~gI~~~G-~L~l~~~~g-~~~~ 254 (265)
.+.||.|++. |++..++++| .+.+++.+| ..++
T Consensus 19 ~fvgk~Vriv-------GkV~~~~~~g~~~~l~s~Dg~~Vtv 53 (121)
T 3kdf_A 19 QFIDKPVCFV-------GRLEKIHPTGKMFILSDGEGKNGTI 53 (121)
T ss_dssp GGTTCEEEEE-------EEEEEECTTSSEEEEECTTSCEEEE
T ss_pred hhCCCeEEEE-------EEEEEEcCCCCEEEEEeCCCCEEEE
Confidence 4689999996 9999999766 666777665 4443
No 42
>3ahu_A Protein HFQ; SM-like motif, protein-RNA complex, translation-RNA complex; 2.20A {Bacillus subtilis} PDB: 3hsb_A
Probab=48.57 E-value=66 Score=22.40 Aligned_cols=54 Identities=19% Similarity=0.143 Sum_probs=36.4
Q ss_pred HHHHHHHhcccCCCEEEEEEC-CeEEEEEEEeECCCceEEEEeCCceEEEEeeeEE
Q psy15214 206 FMKYWNFNHAYTNKTVDILKL-NKIQKGIVIGINKNGCLLLNTKFGKITISSGDVS 260 (265)
Q Consensus 206 ~~~~~~~~~~~~gk~V~v~~~-~~~~~G~~~gI~~~G~L~l~~~~g~~~~~~Gev~ 260 (265)
+.+.+...+.-.+.+|++..- |-.++|.+.+.|. -.++++.+++..-+|--.||
T Consensus 11 lQd~fLn~lrk~~~~Vtv~L~nG~~l~G~I~~fD~-f~VlL~~~g~qqlIYKhAIS 65 (78)
T 3ahu_A 11 IQDQFLNQIRKENTYVTVFLLNGFQLRGQVKGFDN-FTVLLESEGKQQLIYKHAIS 65 (78)
T ss_dssp HHHHHHHHHHHHTCCEEEEETTSCEEEEEEEEECS-SEEEEESSSCEEEEEGGGEE
T ss_pred hHHHHHHHHHHcCCcEEEEEeCCeEEEEEEEEEcc-eEEEEEECCeeEEEEcceEE
Confidence 445555555556888988776 5668999999997 56666665555555544443
No 43
>1y96_B Gemin7, SIP3, GEM-associated protein 7; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=45.68 E-value=50 Score=23.43 Aligned_cols=43 Identities=2% Similarity=-0.144 Sum_probs=31.7
Q ss_pred HHHHHHHHHhcc-cCCCEEEEEECC-eEEEEEEEeECCCceEEEE
Q psy15214 204 SIFMKYWNFNHA-YTNKTVDILKLN-KIQKGIVIGINKNGCLLLN 246 (265)
Q Consensus 204 ~~~~~~~~~~~~-~~gk~V~v~~~~-~~~~G~~~gI~~~G~L~l~ 246 (265)
+.+.++|...+. +.|++|.+...+ ..+.|++.+.|.+......
T Consensus 14 a~LReRfLr~l~~m~~~~v~f~m~E~t~V~a~F~a~d~d~~~f~V 58 (85)
T 1y96_B 14 AALRERYLRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYV 58 (85)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEEEGGGCEEEEEEEEECTTCCEEEE
T ss_pred HHHHHHHHHHHHHhCCCceEEEEeCCeEEEEEEEecCcccceeEh
Confidence 344555555333 579999999874 5589999999999887763
No 44
>3s6n_E Small nuclear ribonucleoprotein E; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_E 2y9c_E 2y9d_E 3cw1_E 3pgw_E* 2y9a_E
Probab=43.85 E-value=18 Score=25.96 Aligned_cols=39 Identities=23% Similarity=0.289 Sum_probs=27.7
Q ss_pred ECCeEEEEEEEeECCCceEEEEeCC-----ceEEEEeeeEEEee
Q psy15214 225 KLNKIQKGIVIGINKNGCLLLNTKF-----GKITISSGDVSLRL 263 (265)
Q Consensus 225 ~~~~~~~G~~~gI~~~G~L~l~~~~-----g~~~~~~Gev~l~~ 263 (265)
.++..+.|++.|+|..-.|++++.. +...-.-|.+.+|.
T Consensus 38 ~~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~~~~~lg~v~iRG 81 (92)
T 3s6n_E 38 QVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKG 81 (92)
T ss_dssp SCSSEEEEEEEEECTTCCEEEEEEEEECSSSCCEEEEEEEEECG
T ss_pred cCCEEEEEEEEEEcCcCcEEEeeeEEEecCCCceeEcCeEEEeC
Confidence 3577899999999999999997532 22334456776663
No 45
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A
Probab=43.31 E-value=21 Score=26.89 Aligned_cols=34 Identities=12% Similarity=0.217 Sum_probs=28.5
Q ss_pred cCCCEEEEEEC-CeEEEEEEEeECCCceEEEEeCC
Q psy15214 216 YTNKTVDILKL-NKIQKGIVIGINKNGCLLLNTKF 249 (265)
Q Consensus 216 ~~gk~V~v~~~-~~~~~G~~~gI~~~G~L~l~~~~ 249 (265)
++|++|.|... +..+.|++.++|..-.|+|++..
T Consensus 36 ~l~k~V~V~Lk~Gr~~~G~L~~fD~~mNlVL~d~~ 70 (121)
T 2fwk_A 36 CIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQ 70 (121)
T ss_dssp TBTSBCEEEETTTEEECCEEEEECTTCCEEEESCC
T ss_pred HcCCeEEEEECCCcEEEEEEEEEcccCCeEeceEE
Confidence 45788999876 67799999999999999997543
No 46
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=42.78 E-value=33 Score=22.96 Aligned_cols=29 Identities=14% Similarity=0.185 Sum_probs=21.7
Q ss_pred cCCCEEEEEEC-CeEEEEEEEeECCCceEE
Q psy15214 216 YTNKTVDILKL-NKIQKGIVIGINKNGCLL 244 (265)
Q Consensus 216 ~~gk~V~v~~~-~~~~~G~~~gI~~~G~L~ 244 (265)
++|++|.+..+ +..++|++.++|+.=-|+
T Consensus 14 WKg~rvAv~vg~ehSFtGiledFDeEviLL 43 (71)
T 1ycy_A 14 WKGHKVAVSVGGDHSFTGTLEDFDEEVILL 43 (71)
T ss_dssp HTTSEEEEEEC----CEEEEEEECSSEEEE
T ss_pred hCCcEEEEEecCcceeeeehhhcCcceeeh
Confidence 47999999877 567899999999865444
No 47
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y* 3s6n_B
Probab=36.57 E-value=69 Score=23.80 Aligned_cols=32 Identities=25% Similarity=0.196 Sum_probs=27.0
Q ss_pred CCCEEEEEEC-CeEEEEEEEeECCCceEEEEeC
Q psy15214 217 TNKTVDILKL-NKIQKGIVIGINKNGCLLLNTK 248 (265)
Q Consensus 217 ~gk~V~v~~~-~~~~~G~~~gI~~~G~L~l~~~ 248 (265)
.|++|.|... +..+.|++.++|..-.|++.+.
T Consensus 38 ~~k~V~V~Lk~gr~~~G~L~~fD~~mNlvL~d~ 70 (118)
T 1b34_B 38 NNTQVLINCRNNKKLLGRVKAFDRHCNMVLENV 70 (118)
T ss_dssp HTCEEEEEETTSCEEEEEEEEECTTCCEEEEEE
T ss_pred CCcEEEEEECCCcEEEEEEEEeCCceEEEEeCE
Confidence 3789999876 6679999999999999999643
No 48
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=35.26 E-value=1e+02 Score=20.74 Aligned_cols=37 Identities=11% Similarity=-0.086 Sum_probs=31.1
Q ss_pred ccCCCEEEEEEC-CeEEEEEEEeECC-CceEEEEeCCce
Q psy15214 215 AYTNKTVDILKL-NKIQKGIVIGINK-NGCLLLNTKFGK 251 (265)
Q Consensus 215 ~~~gk~V~v~~~-~~~~~G~~~gI~~-~G~L~l~~~~g~ 251 (265)
+..|+.|..... +..|.|+++.|+. .|.-+|+=.|+.
T Consensus 14 f~vGddVLA~wtDGl~Y~gtI~~V~~~~gtC~V~F~D~s 52 (66)
T 2eqj_A 14 FEEGQDVLARWSDGLFYLGTIKKINILKQSCFIIFEDSS 52 (66)
T ss_dssp SCTTCEEEEECTTSCEEEEEEEEEETTTTEEEEEETTTE
T ss_pred ccCCCEEEEEEccCcEEEeEEEEEccCCcEEEEEEccCC
Confidence 457999999855 6679999999999 599999988883
No 49
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.02 E-value=1.1e+02 Score=20.91 Aligned_cols=46 Identities=13% Similarity=0.026 Sum_probs=35.4
Q ss_pred ccCCCEEEEEEC-CeEEEEEEEeECCCceEEEEeCCc-eEEEEeeeEE
Q psy15214 215 AYTNKTVDILKL-NKIQKGIVIGINKNGCLLLNTKFG-KITISSGDVS 260 (265)
Q Consensus 215 ~~~gk~V~v~~~-~~~~~G~~~gI~~~G~L~l~~~~g-~~~~~~Gev~ 260 (265)
.-.|..|..... +..+.|++..|+++|...|.-.++ .+++...+|.
T Consensus 10 ~kvGd~clA~wsDg~~Y~A~I~~v~~~~~~~V~f~Dyn~e~v~~~~lr 57 (74)
T 2equ_A 10 FKAGEEVLARWTDCRYYPAKIEAINKEGTFTVQFYDGVIRCLKRMHIK 57 (74)
T ss_dssp CCTTCEEEEECSSSSEEEEEEEEESTTSSEEEEETTSCEEEECGGGEE
T ss_pred CCCCCEEEEECCCCCEEEEEEEEECCCCEEEEEEecCCeEEecHHHCe
Confidence 346888887764 677999999999989888887777 6667666554
No 50
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=33.89 E-value=1.2e+02 Score=21.10 Aligned_cols=47 Identities=21% Similarity=0.179 Sum_probs=35.9
Q ss_pred cccCCCEEEEEE--CCeEEEEEEEeECCCceEEEE-eCCc-eEEEEeeeEE
Q psy15214 214 HAYTNKTVDILK--LNKIQKGIVIGINKNGCLLLN-TKFG-KITISSGDVS 260 (265)
Q Consensus 214 ~~~~gk~V~v~~--~~~~~~G~~~gI~~~G~L~l~-~~~g-~~~~~~Gev~ 260 (265)
....|..+.+.. ++..++|++.++.++|...|. .+-| ...+...++.
T Consensus 27 ~~~~G~~c~a~~~~d~~wyRA~I~~~~~~~~~~V~fvDyGn~e~v~~~~lr 77 (94)
T 3fdr_A 27 TVHVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLR 77 (94)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEECTTSCEEEEETTTCCEEEECGGGCE
T ss_pred CCCCCCEEEEEECCCCeEEEEEEEEECCCCeEEEEEEcCCCeEEEEHHHhh
Confidence 445799998876 588899999999988888886 4667 6666665554
No 51
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=33.80 E-value=1.1e+02 Score=23.68 Aligned_cols=34 Identities=24% Similarity=0.318 Sum_probs=24.7
Q ss_pred ccCCCEEEEEECCeEEEEEEEeECC-CceEEEEeCCc-eEEEE
Q psy15214 215 AYTNKTVDILKLNKIQKGIVIGINK-NGCLLLNTKFG-KITIS 255 (265)
Q Consensus 215 ~~~gk~V~v~~~~~~~~G~~~gI~~-~G~L~l~~~~g-~~~~~ 255 (265)
.+.||.|++. |++..+++ .+.+.+++.|| ..++.
T Consensus 40 ~fvGk~VriV-------GkV~~~~~~G~~~~l~s~Dg~~VtV~ 75 (142)
T 2pi2_E 40 QFIDKPVCFV-------GRLEKIHPTGKMFILSDGEGKNGTIE 75 (142)
T ss_dssp GSTTCEEEEE-------EEEEEECTTSSEEEEECTTSCEEEEE
T ss_pred hhCCCEEEEE-------EEEeEEcCCCCEEEEEeCCCcEEEEE
Confidence 4579999996 99999986 45566677776 54443
No 52
>2qtx_A Uncharacterized protein MJ1435; HFQ, SM, RNA-binding protein, sRNA, translational regulation, RNA binding protein; 2.50A {Methanocaldococcus jannaschii}
Probab=33.21 E-value=90 Score=21.28 Aligned_cols=49 Identities=10% Similarity=0.229 Sum_probs=33.7
Q ss_pred HHHhcccCCCEEEEEEC-CeEEEEEEEeECCCceEEEEeCCceEEEEeeeE
Q psy15214 210 WNFNHAYTNKTVDILKL-NKIQKGIVIGINKNGCLLLNTKFGKITISSGDV 259 (265)
Q Consensus 210 ~~~~~~~~gk~V~v~~~-~~~~~G~~~gI~~~G~L~l~~~~g~~~~~~Gev 259 (265)
|.......+.+|++..- |-.++|.+.+.|. -.++++.+++..-+|-=.|
T Consensus 17 fLn~~r~~~~~Vtv~L~NG~~l~G~I~~fD~-ftVll~~~g~qqliYKhAI 66 (71)
T 2qtx_A 17 FEYARRLNGKKVKIFLRNGEVLDAEVTGVSN-YEIMVKVGDRNLLVFKHAI 66 (71)
T ss_dssp CCGGGGGTTCEEEEEETTSCEEEEEEEEECS-SEEEEEETTEEEEEEGGGE
T ss_pred HHHHHHHcCCcEEEEEeCCeEEEEEEEEEcc-eEEEEEeCCceEEEEeeee
Confidence 44445567889988776 6668999999997 5666676655555553333
No 53
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=29.88 E-value=1.4e+02 Score=21.02 Aligned_cols=33 Identities=15% Similarity=0.168 Sum_probs=27.3
Q ss_pred ccCCCEEEEEEC--CeEEEEEEEeECC-CceEEEEe
Q psy15214 215 AYTNKTVDILKL--NKIQKGIVIGINK-NGCLLLNT 247 (265)
Q Consensus 215 ~~~gk~V~v~~~--~~~~~G~~~gI~~-~G~L~l~~ 247 (265)
.|+|+.|.+.-. -+.|+|++..||. ++.+.+..
T Consensus 6 ~~iGs~VSi~c~d~lGvYQG~i~~vd~~~~tItL~~ 41 (84)
T 2vc8_A 6 DWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTR 41 (84)
T ss_dssp TTTTCEEEEECCTTTCEEEEEEEEEETTTTEEEEEE
T ss_pred cccCCEEEEEECCCceEEEEEEEEeccCCCeEEEeh
Confidence 478999999876 3579999999997 67888864
No 54
>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=27.86 E-value=1.4e+02 Score=22.01 Aligned_cols=32 Identities=28% Similarity=0.371 Sum_probs=24.4
Q ss_pred cccCCCEEEEEECCeEEEEEEEeECCCceEEEEeCCc-eEE
Q psy15214 214 HAYTNKTVDILKLNKIQKGIVIGINKNGCLLLNTKFG-KIT 253 (265)
Q Consensus 214 ~~~~gk~V~v~~~~~~~~G~~~gI~~~G~L~l~~~~g-~~~ 253 (265)
..+.||.|++. |++..++. +.+.+.+.++ ..+
T Consensus 14 ~~~~g~~Vriv-------GkV~~~~g-~~~~l~s~d~~~Vt 46 (114)
T 4gop_A 14 GQYVGQTVRIV-------GKVHKVTG-NTLLMQTSDLGNVE 46 (114)
T ss_dssp GGGTTSEEEEE-------EEEEEEET-TEEEEECTTSCEEE
T ss_pred HhhCCCeEEEE-------EEEeeeCC-CEEEEEeCCCCEEE
Confidence 34689999996 88888887 8888887655 443
No 55
>1kq1_A HFQ, HOST factor for Q beta; hexamer, RNA binding protein, translational regulator, SM motif; 1.55A {Staphylococcus aureus} SCOP: b.38.1.2 PDB: 1kq2_A
Probab=25.06 E-value=1.7e+02 Score=20.13 Aligned_cols=48 Identities=19% Similarity=0.072 Sum_probs=31.4
Q ss_pred HHHHHHhcccCCCEEEEEEC-CeEEEEEEEeECCCceEEEEeCCceEEEE
Q psy15214 207 MKYWNFNHAYTNKTVDILKL-NKIQKGIVIGINKNGCLLLNTKFGKITIS 255 (265)
Q Consensus 207 ~~~~~~~~~~~gk~V~v~~~-~~~~~G~~~gI~~~G~L~l~~~~g~~~~~ 255 (265)
.+.+...+.-...+|++..- |-.+.|.+.+.|. -.++++.+++..-+|
T Consensus 8 Qd~fLn~lrk~k~~VtI~L~nG~~l~G~I~~fD~-f~VlL~~~g~~qLIY 56 (77)
T 1kq1_A 8 QDKALENFKANQTEVTVFFLNGFQMKGVIEEYDK-YVVSLNSQGKQHLIY 56 (77)
T ss_dssp HHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECS-SEEEEEETTEEEEEE
T ss_pred HHHHHHHHHhcCCeEEEEEeCCCEEEEEEEEECC-cEEEEEECCeeEEEE
Confidence 33444444446788988876 5668999999998 455556554444444
No 56
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=24.12 E-value=98 Score=25.73 Aligned_cols=49 Identities=12% Similarity=-0.082 Sum_probs=38.5
Q ss_pred ccCCCEEEEEECCeEEEEEEEeECCCceEEEEeCCc-eEEEEeeeEEEee
Q psy15214 215 AYTNKTVDILKLNKIQKGIVIGINKNGCLLLNTKFG-KITISSGDVSLRL 263 (265)
Q Consensus 215 ~~~gk~V~v~~~~~~~~G~~~gI~~~G~L~l~~~~g-~~~~~~Gev~l~~ 263 (265)
...|+.+.++..+....+++.++|.+=..+.=.++. .+-||-|...|.+
T Consensus 159 ~~~GQ~i~~E~~g~w~~~~V~~vD~SLv~v~f~~dkr~EWIYRGS~Rl~p 208 (213)
T 3dlm_A 159 LKSGQLIKTEWEGTWWKSRVEEVDGSLVRILFLDDKRCEWIYRGSTRLEP 208 (213)
T ss_dssp CCTTCEEEEEETTEEEEEEEEEEETTEEEEEETTTTEEEEEETTCTTBCC
T ss_pred cCCCCEEEEEecCcEEEEEEEEEcceeEEEEEcCCCeeEEEEcCCccchh
Confidence 357999999999999999999998766555555555 7789998866654
Done!