RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15214
(265 letters)
>gnl|CDD|223417 COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme
metabolism].
Length = 238
Score = 164 bits (416), Expect = 6e-50
Identities = 82/235 (34%), Positives = 120/235 (51%), Gaps = 6/235 (2%)
Query: 33 STNSTNSNLLSIANTGLLFHPTFLATKIQTAGRGRAGRIWYSEPEITLTFSLAWKFKISL 92
+STN+ A +G +A + QTAGRGR GR W S L SL + +
Sbjct: 3 EIDSTNTEAKERAASGAPEGTVVVA-EEQTAGRGRRGRKWSSPKGGGLYMSLLLRPDLPP 61
Query: 93 KYLTSLPLVISIALSIALKKFGQKVQLKWPNDLLLNGNKFCGILIDTCIEKKNNNWAIIG 152
L SL LV +A++ AL+KFG V++KWPND+LLNG K GIL++ ++ ++G
Sbjct: 62 AELPSLSLVAGLAVAEALRKFGIDVRIKWPNDVLLNGKKLAGILVEAVGDENGLLAVVVG 121
Query: 153 IGLNLGLPRILSKKIN---IGNISELLNMEHEKLLAVFICYLIDSLKLFEHYGFSIFMKY 209
IG+N+ P + I E ++ E+LLA + L L+ F GF+ +
Sbjct: 122 IGINVNNPPPDFEDIGQPATSLQEEGEEIDREELLAKLLKELEKYLRQFLREGFAPILAR 181
Query: 210 WNFNHAYTNKTVDILKLNKIQKG-IVIGINKNGCLLLNTKFGKI-TISSGDVSLR 262
W K V + + G I GI+++G LLL T G++ TI SG+VSLR
Sbjct: 182 WRARSLSLGKEVRLTLGGGVIFGGIAKGIDEDGALLLETDDGEVQTIYSGEVSLR 236
>gnl|CDD|235896 PRK06955, PRK06955, biotin--protein ligase; Provisional.
Length = 300
Score = 161 bits (410), Expect = 2e-48
Identities = 83/263 (31%), Positives = 126/263 (47%), Gaps = 27/263 (10%)
Query: 26 IDIRTILSTNSTNSNLLSIANT-----GLLFHPTFLATKIQTAGRGRAGRIWYSEPEITL 80
++I + T STN++L++ L P QTAGRGR GR W+++P L
Sbjct: 35 LEI--VEETGSTNADLMARLKALPRSADALPAPIVRVAYEQTAGRGRQGRPWFAQPGNAL 92
Query: 81 TFSLAWKFKISLKYLTSLPLVISIALSIALKKF----GQKVQLKWPNDLLLNGNKFCGIL 136
FS+A + L L L + +AL+ AL GQ++ LKWPNDLL+ G K GIL
Sbjct: 93 LFSVACVLPRPVAALAGLSLAVGVALAEALAALPAALGQRIALKWPNDLLIAGRKLAGIL 152
Query: 137 IDTCIEKKNNNWAIIGIGLNLGLPRILSKKINIGNISE---------------LLNMEHE 181
I+T + +IGIGLN+ ++ +++ E
Sbjct: 153 IETVWATPDATAVVIGIGLNVRRADAVAAEVDALRAREAALARGLPPVALAAACAGANLT 212
Query: 182 KLLAVFICYLIDSLKLFEHYGFSIFMKYWNFNHAYTNKTVDILKLNKIQ-KGIVIGINKN 240
LA + L +L+ F G + F W+ HAY + V +L+ +G+ GI++
Sbjct: 213 DTLAAALNALAPALQAFGADGLAPFAARWHALHAYAGREVVLLEDGAELARGVAHGIDET 272
Query: 241 GCLLLNTKFGKITISSGDVSLRL 263
G LLL+T G+ I++GDVSLR
Sbjct: 273 GQLLLDTPAGRQAIAAGDVSLRE 295
>gnl|CDD|237010 PRK11886, PRK11886, bifunctional biotin--[acetyl-CoA-carboxylase]
synthetase/biotin operon repressor; Provisional.
Length = 319
Score = 150 bits (381), Expect = 1e-43
Identities = 78/239 (32%), Positives = 119/239 (49%), Gaps = 9/239 (3%)
Query: 30 TILSTNSTNSNLLSIANTGLLFHPTFLATKIQTAGRGRAGRIWYSEPEITLTFSLAWKFK 89
I STN + ++ +G L LA QTAGRGR GR W+S L SL W+
Sbjct: 85 VIDSTNQYLLDRIAELKSGDLC----LAEY-QTAGRGRRGRQWFSPFGGNLYLSLYWRLN 139
Query: 90 ISLKYLTSLPLVISIALSIALKKFG-QKVQLKWPNDLLLNGNKFCGILIDTCIEKKNNNW 148
L LV+ IA++ AL++ G V LKWPND+ LN K GIL++ E +
Sbjct: 140 QGPAQAMGLSLVVGIAIAEALRRLGAIDVGLKWPNDIYLNDRKLAGILVELSGETGDAAH 199
Query: 149 AIIGIGLNLGLPRILSKKINIG--NISELLNM-EHEKLLAVFICYLIDSLKLFEHYGFSI 205
+IGIG+N+ +P + I+ ++ E + +L A I L +L+LFE G +
Sbjct: 200 VVIGIGINVAMPDFPEELIDQPWSDLQEAGPTIDRNQLAAELIKQLRAALELFEQEGLAP 259
Query: 206 FMKYWNFNHAYTNKTVDILKLNKIQKGIVIGINKNGCLLLNTKFGKITISSGDVSLRLK 264
F++ W + + V ++ +K GI GI++ G LLL + + G++SLR
Sbjct: 260 FLERWKKLDLFLGREVKLIIGDKEISGIARGIDEQGALLLEDDGVEKPFNGGEISLRSW 318
>gnl|CDD|232834 TIGR00121, birA_ligase, birA, biotin-[acetyl-CoA-carboxylase]
ligase region. This model represents the
biotin--acetyl-CoA-carboxylase ligase region of
biotin--acetyl-CoA-carboxylase ligase. In Escherichia
coli and some other species, this enzyme is part of a
bifunction protein BirA that includes a small,
N-terminal biotin operon repressor domain. Proteins
identified by this model should not be called
bifunctional unless they are also identified by
birA_repr_reg (TIGR00122). The protein name suggests
that this enzyme transfers biotin only to
acetyl-CoA-carboxylase but it also transfers the biotin
moiety to other proteins. The apparent orthologs among
the eukaryotes are larger proteins that contain a single
copy of this domain [Protein fate, Protein modification
and repair].
Length = 237
Score = 136 bits (345), Expect = 2e-39
Identities = 79/233 (33%), Positives = 119/233 (51%), Gaps = 5/233 (2%)
Query: 33 STNSTNSNLLSIANTGLLFHPTFLATKIQTAGRGRAGRIWYSEPEITLTFSLAWKFKISL 92
+STN L +A G L +A QTAGRGR GR W S PE L FSL + +
Sbjct: 7 VIDSTNQYALELAKEGKLKGDLVVAEY-QTAGRGRRGRKWLS-PEGGLYFSLILRPDLPK 64
Query: 93 KYLTSLPLVISIALSIALKKFGQKVQLKWPNDLLLNGNKFCGILIDTCIEKKNNNWAIIG 152
L LV IA++ LK+ G +VQ+KWPND+LL K GIL + ++ ++ +IG
Sbjct: 65 SPAPGLTLVAGIAIAEVLKELGDQVQVKWPNDILLKDKKLGGILTELTGKENRADYVVIG 124
Query: 153 IGLNLGLPRILSKKINIG-NISELLNMEHEK--LLAVFICYLIDSLKLFEHYGFSIFMKY 209
IG+N+ + ++SE ++ ++ L+ F+ ++L+ FE G +
Sbjct: 125 IGINVQNRKPAESLREQAISLSEEAGIDLDRGELIEGFLRNFEENLEWFEQEGIDEILSK 184
Query: 210 WNFNHAYTNKTVDILKLNKIQKGIVIGINKNGCLLLNTKFGKITISSGDVSLR 262
W A+ + V + N +GI GI+K+G LLL G I SG++SLR
Sbjct: 185 WEKLSAHIGREVSLTTGNGEIEGIARGIDKDGALLLEDGGGIKKIISGEISLR 237
>gnl|CDD|183976 PRK13325, PRK13325, bifunctional biotin--[acetyl-CoA-carboxylase]
ligase/pantothenate kinase; Reviewed.
Length = 592
Score = 110 bits (276), Expect = 2e-27
Identities = 76/233 (32%), Positives = 116/233 (49%), Gaps = 7/233 (3%)
Query: 36 STNSNLLSIANTGL-LFHPTFLATKIQTAGRGRAGRIWYSEPEITLTFSLAWKFKISLKY 94
S+N +L +A H T T +Q+ GRGR GR W L FS W F
Sbjct: 92 SSNDEILELARIAPDKAHKTICVTHLQSKGRGRQGRKWSHRLGECLMFSFGWVFDRPQYE 151
Query: 95 LTSLPLVISIALSIALKKFGQKVQLKWPNDLLLNGNKFCGILIDTCIEKKNNNWAIIGIG 154
L SL V ++A AL + G K Q+KWPNDL++ +K GILI+T + A++GIG
Sbjct: 152 LGSLSPVAAVACRRALSRLGLKTQIKWPNDLVVGRDKLGGILIET-VRTGGKTVAVVGIG 210
Query: 155 LNLGLPRILSKKINIGNI----SELLNMEHEKLLAVFICYLIDSLKLFEHYGFSIFMKYW 210
+N LP+ + ++ ++ S N + LL + L L + GF+ F+ +
Sbjct: 211 INFVLPKEVENAASVQSLFQTASRRGNADAAVLLETLLAELDAVLLQYARDGFAPFVAEY 270
Query: 211 NFNHAYTNKTVDILKLNK-IQKGIVIGINKNGCLLLNTKFGKITISSGDVSLR 262
+ K V +L+ + + +G V G++ G L L T GK T+ SG++SLR
Sbjct: 271 QAANRDHGKAVLLLRDGETVFEGTVKGVDGQGVLHLETAEGKQTVVSGEISLR 323
>gnl|CDD|169384 PRK08330, PRK08330, biotin--protein ligase; Provisional.
Length = 236
Score = 89.0 bits (221), Expect = 3e-21
Identities = 76/244 (31%), Positives = 117/244 (47%), Gaps = 22/244 (9%)
Query: 26 IDIRTILSTNSTNSNLLSIANTGLLFHPTFLATKIQTAGRGRAGRIWYSEPEITLTFSLA 85
I + STN + G T + QTAG GR GR W S PE L S+
Sbjct: 6 IYFDEVDSTNEYAKRIAPDEEEG-----TVIVADRQTAGHGRKGRAWAS-PEGGLWMSVI 59
Query: 86 WKFKISLKYLTSLPLVISIALSIALKKFGQKVQLKWPNDLLLNGNKFCGILIDTCIEKKN 145
K K+S ++L L + ++A+ L++FG + ++KWPND+L+N K G+L +E K
Sbjct: 60 LKPKVSPEHLPKLVFLGALAVVDTLREFGIEGKIKWPNDVLVNYKKIAGVL----VEGKG 115
Query: 146 NNWAIIGIGLNLG--LPRILSKKINIGNISELLNMEHEKLLAVF---ICYLIDSLKLFEH 200
+ ++GIGLN+ +P L + ++ E+L E L+ VF + L KLF
Sbjct: 116 DF-VVLGIGLNVNNEIPDELRETAT--SMKEVLGREVP-LIEVFKRLVENLDRWYKLFLE 171
Query: 201 YGFSIFMKYWNFNHAYTNKTVDILKLNKIQ-KGIVIGINKNGCLLLNTKFGKIT-ISSGD 258
I + + K V I+ +I +GI I++ G L+L G + + GD
Sbjct: 172 GPGEILEEVKGRS-MILGKRVKIIGDGEILVEGIAEDIDEFGALILRLDDGTVKKVLYGD 230
Query: 259 VSLR 262
VSLR
Sbjct: 231 VSLR 234
>gnl|CDD|235649 PRK05935, PRK05935, biotin--protein ligase; Provisional.
Length = 190
Score = 64.1 bits (156), Expect = 2e-12
Identities = 45/147 (30%), Positives = 75/147 (51%), Gaps = 18/147 (12%)
Query: 13 IKNLYYNYNTDTKIDIRTILSTNSTNSNLLSIANTGLLFHPTFLATKIQTAGRGRAGRIW 72
+K +YY +I STN+T + + + L T ++T+ QTAG+G+ G+ W
Sbjct: 1 MKVIYY--------EIAETPSTNTTAKEGMHLWDPYAL---TVISTREQTAGKGKFGKSW 49
Query: 73 YS-EPEITLTFSLAWKFKISLKYLTSLPLVISIALSIAL-KKFG-QKVQLKWPNDLLLNG 129
+S + ++ +F F L SL + + L + G + +KWPND+L++G
Sbjct: 50 HSSDQDLLASFCF---FITVLNIDVSLLFRLGTEAVMRLGEDLGITEAVIKWPNDVLVHG 106
Query: 130 NKFCGILIDTCIEKKNNNWAIIGIGLN 156
K CG+L +T I K I+GIG+N
Sbjct: 107 EKLCGVLCET-IPVKGGLGVILGIGVN 132
>gnl|CDD|236273 PRK08477, PRK08477, biotin--protein ligase; Provisional.
Length = 211
Score = 63.4 bits (155), Expect = 3e-12
Identities = 51/136 (37%), Positives = 62/136 (45%), Gaps = 16/136 (11%)
Query: 28 IRTILSTNSTNSNLLSIANTGLLFHPTFLATKIQTAGRGRAGRIWYSEPEITLTFSLAWK 87
IR S +ST + L+ G L P + K QTAG G G W + L FS A
Sbjct: 3 IRVFESLDSTQTYLIEKIKNGELKAPFAIVAKEQTAGIGSRGNSWEGKKG-NLFFSFA-- 59
Query: 88 FKISLKYLTS-LPLV-ISIALSIALKKF----GQKVQLKWPNDLLLNGNKFCGILIDTCI 141
+ L LPL SI LK+ G KV LKWPNDL L+ K G+ I
Sbjct: 60 --LKESDLPKDLPLQSSSIYFGFLLKEVLKELGSKVWLKWPNDLYLDDKKIGGV-----I 112
Query: 142 EKKNNNWAIIGIGLNL 157
K N+ + GIGLNL
Sbjct: 113 TNKIKNFIVCGIGLNL 128
>gnl|CDD|217367 pfam03099, BPL_LplA_LipB, Biotin/lipoate A/B protein ligase family.
This family includes biotin protein ligase,
lipoate-protein ligase A and B. Biotin is covalently
attached at the active site of certain enzymes that
transfer carbon dioxide from bicarbonate to organic
acids to form cellular metabolites. Biotin protein
ligase (BPL) is the enzyme responsible for attaching
biotin to a specific lysine at the active site of biotin
enzymes. Each organism probably has only one BPL. Biotin
attachment is a two step reaction that results in the
formation of an amide linkage between the carboxyl group
of biotin and the epsilon-amino group of the modified
lysine. Lipoate-protein ligase A (LPLA) catalyzes the
formation of an amide linkage between lipoic acid and a
specific lysine residue in lipoate dependent enzymes.
The unusual biosynthesis pathway of lipoic acid is
mechanistically intertwined with attachment of the
cofactor.
Length = 124
Score = 60.5 bits (147), Expect = 8e-12
Identities = 39/134 (29%), Positives = 54/134 (40%), Gaps = 23/134 (17%)
Query: 33 STNSTNSNLLSIANTGLLFHPTFLATKIQTAGRGRAGRIWYSEPEITLTFSLAW---KFK 89
ST N L + + QT GR R+W+S P L +SL
Sbjct: 4 RQKSTKE----EVNLEGLEEGGVVVARRQTGGR----RVWHS-PGGNLAYSLLLLPELKS 54
Query: 90 ISLKYLTSLPLVISIA----LSIALKKFGQKVQLKWPNDLLLNGNKFCGILIDTCIEKKN 145
L + L++ +A L G V++KWPNDLL+NG K GIL E +
Sbjct: 55 FKPSDLPAYVLLLVLAVLEALGPKAGIPGIWVRIKWPNDLLVNGKKIAGIL----QEIRR 110
Query: 146 NNWA---IIGIGLN 156
+GIG+N
Sbjct: 111 GGTLHHGTLGIGIN 124
>gnl|CDD|140302 PTZ00276, PTZ00276, biotin/lipoate protein ligase; Provisional.
Length = 245
Score = 61.8 bits (150), Expect = 3e-11
Identities = 37/102 (36%), Positives = 55/102 (53%), Gaps = 9/102 (8%)
Query: 61 QTAGRGRAGRIWYSEPEITLTFSLAWKFK-ISLKYLTSLPLVISIALSIALKKF--GQKV 117
QTAGRG GR W S P+ + F+L K + + + LPL+ +A A+ + G V
Sbjct: 41 QTAGRGTGGRTWTS-PKGNMYFTLCIPQKGVPPELVPVLPLITGLACRAAIMEVLHGAAV 99
Query: 118 QLKWPNDLLLNGNKFCGILIDTCIEKKNNNWAIIGIGLNLGL 159
KWPND++ G K G LI++ + IIGIG+N+ +
Sbjct: 100 HTKWPNDIIYAGKKIGGSLIES-----EGEYLIIGIGMNIEV 136
>gnl|CDD|216943 pfam02237, BPL_C, Biotin protein ligase C terminal domain. The
function of this structural domain is unknown. It is
found to the C terminus of the biotin protein ligase
catalytic domain pfam01317.
Length = 47
Score = 39.8 bits (94), Expect = 4e-05
Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 218 NKTVDILKLNKIQKGIVIGINKNGCLLLNTKFGKITISSGDVSLR 262
K V + +GI +GI+ +G LLL T G I SGD+SLR
Sbjct: 3 GKEVKVTTGGGKVEGIAVGIDDDGRLLLETDDGIRIIISGDISLR 47
>gnl|CDD|185536 PTZ00275, PTZ00275, biotin-acetyl-CoA-carboxylase ligase;
Provisional.
Length = 285
Score = 42.9 bits (101), Expect = 8e-05
Identities = 51/201 (25%), Positives = 84/201 (41%), Gaps = 20/201 (9%)
Query: 70 RIWYSEP-EITLTFSLAWKFKISLKYLTSLPLVISIALSIALKKFGQKVQLKWPNDLLLN 128
RIW SE + TF W + ++ + L ++A+S L+ F Q+KW ND+L+N
Sbjct: 73 RIWLSEKGNLFTTFVFLWN-RNDIEKVKYLAQTCTVAISKTLEYFHLVTQIKWINDVLVN 131
Query: 129 GNKFCGILIDTCIEKKNNN------WAIIGIGLNLGL-----------PRILSKKINIGN 171
K G L+ N ++GIG+N+ L I + N
Sbjct: 132 YKKIAGCLVHLYYLDDFPNLNSRYVCVMVGIGINVTLEDKHNLLNNNYTSIKKELQRDFN 191
Query: 172 ISELLNMEHEKLLAVFICYLIDSLKLFEHYGFSIFMKYWNFNHAYTNKTVDILKLNKIQK 231
+ + + + I KL + GFS F+ Y Y +K V I + N++
Sbjct: 192 TPKSIPSVEQVTEKLIINLKAVINKLRKE-GFSSFLDYITPRLLYKDKKVLIDQDNELIV 250
Query: 232 GIVIGINKNGCLLLNTKFGKI 252
G + G+ +G LLL + K+
Sbjct: 251 GYLQGLLHDGSLLLLREKNKL 271
>gnl|CDD|240416 PTZ00432, PTZ00432, falcilysin; Provisional.
Length = 1119
Score = 29.4 bits (66), Expect = 2.7
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 10/98 (10%)
Query: 100 LVISIALSIALKKFGQKVQLKWPNDLLLNGNKFCGILIDTCIEKKNNNWAIIGIGLNLGL 159
+ S ALK+ K + D L+NG L +T + +W+ + LN
Sbjct: 804 VFSSKGHKFALKRMKSKFSVSDYADELVNGYSQLLFLKETLVPLAEKDWSKVESKLNEIR 863
Query: 160 PRILSKK---INIGNISELL-------NMEHEKLLAVF 187
++LS K +N+ SELL +KL + F
Sbjct: 864 NKLLSMKNLTVNVTGDSELLDSLLDDSTTFLKKLSSTF 901
>gnl|CDD|198361 cd07786, FGGY_EcGK_like, Escherichia coli glycerol kinase-like
proteins; belongs to the FGGY family of carbohydrate
kinases. This subgroup is composed of mostly bacterial
and archaeal glycerol kinases (GK), including the well
characterized proteins from Escherichia coli (EcGK),
Thermococcus kodakaraensis (TkGK), and Enterococcus
casseliflavus (EnGK). GKs contain two large domains
separated by a deep cleft that forms the active site.
This model includes both the N-terminal domain, which
adopts a ribonuclease H-like fold, and the structurally
related C-terminal domain. The high affinity ATP binding
site of EcGK is created only by a substrate-induced
conformational change, which is initiated by
protein-protein interactions through complex formation
with enzyme IIAGlc (also known as IIIGlc), the
glucose-specific phosphocarrier protein of the
phosphotransferase system (PTS). EcGK exists in a
dimer-tetramer equilibrium. IIAGlc binds to both EcGK
dimer and tetramer, and inhibits the uptake and
subsequent metabolism of glycerol and maltose. Another
well-known allosteric regulator of EcGK is fructose
1,6-bisphosphate (FBP), which binds to the EcGK tetramer
and plays an essential role in the stabilization of the
inactive tetrameric form. EcGK requires Mg2+ for its
enzymatic activity. Members in this subgroup belong to
the FGGY family of carbohydrate kinases.
Length = 486
Score = 28.2 bits (64), Expect = 5.1
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 45 ANTGLLFHPTFLATKIQ 61
TGL+ P F ATKI+
Sbjct: 122 EKTGLVLDPYFSATKIR 138
>gnl|CDD|235952 PRK07187, PRK07187, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 721
Score = 27.8 bits (62), Expect = 7.9
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 10 TSRIKNLYYNYNTD--TKID----IRTILSTNSTNSNLLSIANTG 48
T+++K L Y T+ D + I T NS+LL++A TG
Sbjct: 543 TAKVKELLQKYGVTIPTQADWQELVEDIKKTGLANSHLLAVAPTG 587
>gnl|CDD|182666 PRK10711, PRK10711, hypothetical protein; Provisional.
Length = 231
Score = 27.0 bits (60), Expect = 9.5
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 71 IWYSEPEITLTFSLAWKFKISLKYLTSLPLVISIALSIAL 110
IW+S P + F A K K+ PL++++ + I
Sbjct: 5 IWWSLPLTLIVFFAARKLAARFKFPLLNPLLVAMVVIIPF 44
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.139 0.413
Gapped
Lambda K H
0.267 0.0739 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,187,653
Number of extensions: 1266736
Number of successful extensions: 1216
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1196
Number of HSP's successfully gapped: 36
Length of query: 265
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 170
Effective length of database: 6,723,972
Effective search space: 1143075240
Effective search space used: 1143075240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.1 bits)