RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15214
         (265 letters)



>d1biaa3 d.104.1.2 (A:64-270) Biotin repressor/biotin holoenzyme
           synthetase, catalytic (central) domain {Escherichia coli
           [TaxId: 562]}
          Length = 207

 Score = 69.6 bits (169), Expect = 6e-15
 Identities = 56/183 (30%), Positives = 87/183 (47%), Gaps = 6/183 (3%)

Query: 33  STNSTNSNLLSIANTGLLFHPTFLATKIQTAGRGRAGRIWYSEPEITLTFSLAWKFKISL 92
             +STN  LL                + Q AGRGR GR W+S     L  S+ W+ +   
Sbjct: 23  VIDSTNQYLLDRIGEL--KSGDACIAEYQQAGRGRRGRKWFSPFGANLYLSMFWRLEQGP 80

Query: 93  KYLTSLPLVISIALSIALKKFGQ-KVQLKWPNDLLLNGNKFCGILIDTCIEKKNNNWAII 151
                L LVI I ++  L+K G  KV++KWPNDL L   K  GIL++   +  +    +I
Sbjct: 81  AAAIGLSLVIGIVMAEVLRKLGADKVRVKWPNDLYLQDRKLAGILVELTGKTGDAAQIVI 140

Query: 152 GIGLNLGLPRI---LSKKINIGNISELLNMEHEKLLAVFICYLIDSLKLFEHYGFSIFMK 208
           G G+N+ + R+   +  +  I      +N++   L A+ I  L  +L+LFE  G + ++ 
Sbjct: 141 GAGINMAMRRVEESVVNQGWITLQEAGINLDRNTLAAMLIRELRAALELFEQEGLAPYLS 200

Query: 209 YWN 211
            W 
Sbjct: 201 RWE 203


>d2zgwa2 d.104.1.2 (A:1-188) Biotin--[acetyl-CoA-carboxylase] ligase
           catalytic domain {Archaeon Pyrococcus horikoshii [TaxId:
           53953]}
          Length = 188

 Score = 62.5 bits (151), Expect = 1e-12
 Identities = 42/179 (23%), Positives = 70/179 (39%), Gaps = 12/179 (6%)

Query: 33  STNSTNSNLLSIANTGLLFHPTFLATKIQTAGRGRAGRIWYSEPEITLTFSLAWKFKISL 92
              STN      A T  L   T +    QT G G   R W S PE  L  S+    K+  
Sbjct: 18  EITSTNE----FAKTSYLEEGTVIVADKQTMGHGALNRKWES-PEGGLWLSIVLSPKVPQ 72

Query: 93  KYLTSLPLVISIALSIALKKFGQKVQLKWPNDLLLNGNKFCGILIDTCIEKKNNNWAIIG 152
           K L  +  + ++ +   LK+F    ++KWPND+L+N     G+L++        +  ++G
Sbjct: 73  KDLPKIVFLGAVGVVETLKEFSIDGRIKWPNDVLVNYKAIAGVLVEGK-----GDKIVLG 127

Query: 153 IGLNLGLPRILSKKINIGNISELLNMEHEKLLAVFICYLIDSLKLFEHYGFSIFMKYWN 211
           IGLN+   ++ +   ++        +    +    I  L      F      I     +
Sbjct: 128 IGLNV-NNKVPNGATSMKLELG-SEVPLLSVFRSLITNLDRLYLNFLKNPMDILNLVRD 184


>d1biaa2 b.34.1.1 (A:271-317) Biotin repressor/biotin holoenzyme
           synthetase, C-terminal domain {Escherichia coli [TaxId:
           562]}
          Length = 47

 Score = 50.0 bits (120), Expect = 2e-09
 Identities = 16/47 (34%), Positives = 24/47 (51%)

Query: 216 YTNKTVDILKLNKIQKGIVIGINKNGCLLLNTKFGKITISSGDVSLR 262
           + N+ V ++  +K   GI  GI+K G LLL           G++SLR
Sbjct: 1   FINRPVKLIIGDKEIFGISRGIDKQGALLLEQDGIIKPWMGGEISLR 47


>d2nn6h1 b.40.4.5 (H:73-167) S1-domain of Ribosomal RNA-processing
           protein 4, RRP4 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 95

 Score = 25.3 bits (55), Expect = 3.3
 Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 3/43 (6%)

Query: 213 NHAYTNKTVDILKLNKIQKGIVIGINKNGCLLLNT---KFGKI 252
           +          L+   +    V  +  +G + L+T   K+GK+
Sbjct: 52  SAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKL 94


>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine
           synthase) {Escherichia coli, isoform B (CysM) [TaxId:
           562]}
          Length = 292

 Score = 25.3 bits (54), Expect = 8.9
 Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 191 LIDSLKLFEHYGFSIFMKYWNFNHAYTNKTVDILKLNKIQKGIVIGINKNGC 242
           L+   ++    G  +++K    N A + K  D   L+ I +    G  K G 
Sbjct: 12  LVKLQRMGPDNGSEVWLKLEGNNPAGSVK--DRAALSMIVEAEKRGEIKPGD 61


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.139    0.413 

Gapped
Lambda     K      H
   0.267   0.0514    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 960,585
Number of extensions: 43030
Number of successful extensions: 121
Number of sequences better than 10.0: 1
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 7
Length of query: 265
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 181
Effective length of database: 1,254,276
Effective search space: 227023956
Effective search space used: 227023956
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.3 bits)